Query 013861
Match_columns 435
No_of_seqs 132 out of 1053
Neff 3.5
Searched_HMMs 46136
Date Fri Mar 29 08:07:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013861.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013861hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0113 HemB Delta-aminolevuli 100.0 7E-155 1E-159 1131.7 32.1 325 100-432 4-329 (330)
2 cd04823 ALAD_PBGS_aspartate_ri 100.0 5E-154 1E-158 1130.4 33.4 319 104-431 1-320 (320)
3 PF00490 ALAD: Delta-aminolevu 100.0 6E-154 1E-158 1132.1 28.5 320 103-430 3-324 (324)
4 PRK09283 delta-aminolevulinic 100.0 3E-152 6E-157 1120.1 33.1 320 101-431 3-323 (323)
5 cd00384 ALAD_PBGS Porphobilino 100.0 6E-152 1E-156 1113.2 32.6 313 107-430 1-314 (314)
6 PRK13384 delta-aminolevulinic 100.0 2E-151 4E-156 1111.9 32.5 315 103-429 7-322 (322)
7 cd04824 eu_ALAD_PBGS_cysteine_ 100.0 2E-149 4E-154 1097.1 32.9 312 111-430 5-320 (320)
8 KOG2794 Delta-aminolevulinic a 100.0 5E-140 1E-144 1015.9 29.6 337 87-434 2-340 (340)
9 TIGR03128 RuMP_HxlA 3-hexulose 96.9 0.021 4.7E-07 52.3 12.9 164 158-420 13-185 (206)
10 PRK07028 bifunctional hexulose 96.8 0.066 1.4E-06 55.3 16.6 170 158-419 17-188 (430)
11 cd08210 RLP_RrRLP Ribulose bis 96.4 0.014 3E-07 60.1 8.9 103 242-379 137-249 (364)
12 cd00377 ICL_PEPM Members of th 96.3 0.026 5.7E-07 54.5 9.9 120 249-420 87-225 (243)
13 cd06556 ICL_KPHMT Members of t 96.3 0.042 9.2E-07 53.6 11.0 210 146-429 15-231 (240)
14 cd08205 RuBisCO_IV_RLP Ribulos 96.3 0.0055 1.2E-07 62.8 5.1 109 244-380 144-254 (367)
15 cd00945 Aldolase_Class_I Class 95.9 0.2 4.4E-06 44.1 12.4 102 241-384 11-124 (201)
16 cd04726 KGPDC_HPS 3-Keto-L-gul 95.3 0.69 1.5E-05 42.0 14.0 170 158-420 14-185 (202)
17 cd00945 Aldolase_Class_I Class 95.1 1.3 2.8E-05 39.1 14.7 152 154-379 11-178 (201)
18 PLN02489 homocysteine S-methyl 95.1 0.82 1.8E-05 46.5 15.3 226 158-418 55-313 (335)
19 cd00452 KDPG_aldolase KDPG and 95.0 2.5 5.4E-05 39.0 17.0 156 157-423 16-173 (190)
20 PRK08645 bifunctional homocyst 94.9 1.2 2.6E-05 48.7 16.7 219 158-418 43-267 (612)
21 PRK05718 keto-hydroxyglutarate 94.5 1.6 3.5E-05 42.1 14.8 151 158-419 28-181 (212)
22 PRK13307 bifunctional formalde 94.2 1.7 3.7E-05 45.7 15.4 149 188-420 204-357 (391)
23 cd04729 NanE N-acetylmannosami 93.9 1.3 2.7E-05 41.6 12.5 170 158-420 28-205 (219)
24 cd02803 OYE_like_FMN_family Ol 93.6 1.7 3.7E-05 42.7 13.4 96 158-267 142-249 (327)
25 PRK07807 inosine 5-monophospha 93.1 0.72 1.6E-05 49.3 10.6 50 158-220 227-277 (479)
26 cd04727 pdxS PdxS is a subunit 93.0 6.1 0.00013 40.3 16.4 146 160-377 18-198 (283)
27 PRK14040 oxaloacetate decarbox 92.6 3.6 7.9E-05 45.3 15.4 193 147-395 18-223 (593)
28 PF03437 BtpA: BtpA family; I 92.5 3.6 7.8E-05 41.0 13.8 178 143-378 10-205 (254)
29 TIGR00259 thylakoid_BtpA membr 92.4 4 8.6E-05 40.8 14.0 176 144-377 10-204 (257)
30 PRK09485 mmuM homocysteine met 91.9 5.5 0.00012 39.9 14.5 226 158-418 46-284 (304)
31 PF02574 S-methyl_trans: Homoc 91.7 0.29 6.4E-06 48.1 5.3 226 158-418 41-285 (305)
32 PRK15063 isocitrate lyase; Pro 91.7 4.1 8.8E-05 43.6 13.9 106 271-386 206-318 (428)
33 PRK04147 N-acetylneuraminate l 91.5 2.6 5.7E-05 41.5 11.6 109 234-383 16-140 (293)
34 PRK01130 N-acetylmannosamine-6 91.4 2.6 5.7E-05 39.4 11.0 170 158-420 24-201 (221)
35 TIGR00343 pyridoxal 5'-phospha 91.3 7.9 0.00017 39.6 14.8 117 160-347 20-139 (287)
36 PTZ00170 D-ribulose-5-phosphat 91.0 4.8 0.0001 38.7 12.6 181 148-420 11-200 (228)
37 PRK07534 methionine synthase I 90.5 8.1 0.00018 39.6 14.4 218 158-418 45-275 (336)
38 TIGR02319 CPEP_Pphonmut carbox 90.5 2.8 6.2E-05 42.5 11.0 124 201-378 67-206 (294)
39 PRK11320 prpB 2-methylisocitra 90.3 5.1 0.00011 40.6 12.6 168 147-381 21-210 (292)
40 TIGR01949 AroFGH_arch predicte 90.2 5.6 0.00012 38.5 12.3 59 339-420 166-226 (258)
41 PRK00311 panB 3-methyl-2-oxobu 90.1 3.3 7.3E-05 41.3 10.9 166 147-343 83-255 (264)
42 PRK00043 thiE thiamine-phospha 90.0 1.3 2.8E-05 40.4 7.5 69 327-419 113-186 (212)
43 PRK07188 nicotinate phosphorib 89.8 1.3 2.7E-05 46.0 8.0 70 198-292 188-285 (352)
44 PRK11613 folP dihydropteroate 89.6 1.2 2.6E-05 44.8 7.6 103 309-422 21-141 (282)
45 TIGR00262 trpA tryptophan synt 89.6 20 0.00044 35.3 15.7 181 158-420 25-226 (256)
46 PRK07226 fructose-bisphosphate 89.5 13 0.00029 36.3 14.5 71 324-420 158-230 (267)
47 cd06557 KPHMT-like Ketopantoat 89.5 4.1 8.8E-05 40.5 11.0 135 200-379 61-199 (254)
48 cd08601 GDPD_SaGlpQ_like Glyce 88.8 2.7 5.9E-05 40.0 9.0 121 270-431 125-256 (256)
49 cd00739 DHPS DHPS subgroup of 88.7 3 6.6E-05 41.0 9.4 100 314-422 13-128 (257)
50 cd00408 DHDPS-like Dihydrodipi 88.7 4.5 9.8E-05 39.0 10.5 109 234-383 10-133 (281)
51 PF04131 NanE: Putative N-acet 88.7 8.1 0.00018 37.5 12.0 145 202-423 23-175 (192)
52 cd00954 NAL N-Acetylneuraminic 88.5 4.5 9.7E-05 39.8 10.5 118 234-392 13-153 (288)
53 PRK07259 dihydroorotate dehydr 88.4 27 0.00059 34.3 17.1 41 361-420 222-262 (301)
54 PRK08444 hypothetical protein; 87.9 1 2.2E-05 46.4 5.8 223 149-417 76-320 (353)
55 PRK00311 panB 3-methyl-2-oxobu 87.9 4.9 0.00011 40.2 10.4 174 146-379 18-202 (264)
56 TIGR03572 WbuZ glycosyl amidat 87.8 25 0.00053 33.2 16.8 70 328-420 155-226 (232)
57 cd00958 DhnA Class I fructose- 87.6 24 0.00053 33.2 14.4 182 158-420 22-213 (235)
58 cd06557 KPHMT-like Ketopantoat 87.5 5.8 0.00012 39.4 10.6 173 132-342 74-251 (254)
59 cd04740 DHOD_1B_like Dihydroor 87.3 7.1 0.00015 38.1 11.0 42 361-421 219-260 (296)
60 PRK12331 oxaloacetate decarbox 86.7 49 0.0011 35.5 17.6 216 147-416 17-255 (448)
61 TIGR03249 KdgD 5-dehydro-4-deo 86.5 6.8 0.00015 38.7 10.5 108 234-383 18-140 (296)
62 PRK04180 pyridoxal biosynthesi 86.2 5.1 0.00011 41.0 9.6 147 160-377 27-207 (293)
63 PRK14041 oxaloacetate decarbox 86.1 55 0.0012 35.4 18.3 197 147-395 16-221 (467)
64 cd00950 DHDPS Dihydrodipicolin 86.0 10 0.00023 36.8 11.3 106 235-381 14-134 (284)
65 PRK07565 dihydroorotate dehydr 86.0 3.8 8.2E-05 41.2 8.5 64 341-420 126-196 (334)
66 TIGR00674 dapA dihydrodipicoli 85.8 7.8 0.00017 37.9 10.4 107 234-381 11-132 (285)
67 PRK14042 pyruvate carboxylase 85.5 7.5 0.00016 43.1 11.1 257 105-418 54-335 (596)
68 cd02930 DCR_FMN 2,4-dienoyl-Co 85.4 22 0.00049 36.1 13.8 177 196-378 29-281 (353)
69 COG1060 ThiH Thiamine biosynth 85.2 1.1 2.3E-05 46.7 4.4 228 149-431 86-347 (370)
70 PF02581 TMP-TENI: Thiamine mo 84.9 3.7 8E-05 37.5 7.3 70 326-419 103-175 (180)
71 cd04733 OYE_like_2_FMN Old yel 84.9 19 0.00041 36.3 12.9 94 159-266 151-256 (338)
72 TIGR03551 F420_cofH 7,8-dideme 84.7 4.1 8.9E-05 41.1 8.2 91 317-419 64-156 (343)
73 cd00377 ICL_PEPM Members of th 84.7 5.1 0.00011 39.0 8.5 116 158-294 85-203 (243)
74 TIGR03551 F420_cofH 7,8-dideme 84.7 2.3 5E-05 42.8 6.4 57 150-217 67-123 (343)
75 PRK07695 transcriptional regul 84.6 4.1 8.8E-05 37.7 7.5 63 340-422 113-180 (201)
76 TIGR02082 metH 5-methyltetrahy 84.3 35 0.00077 40.9 16.5 233 147-418 40-294 (1178)
77 PRK12344 putative alpha-isopro 84.2 11 0.00025 40.8 11.6 205 146-418 18-230 (524)
78 TIGR02317 prpB methylisocitrat 84.1 11 0.00024 38.1 10.7 168 147-381 17-205 (285)
79 PRK12999 pyruvate carboxylase; 84.0 2.6 5.6E-05 49.7 7.2 97 159-280 629-733 (1146)
80 PRK05927 hypothetical protein; 83.9 1.8 3.9E-05 44.4 5.3 114 148-285 71-199 (350)
81 TIGR00222 panB 3-methyl-2-oxob 83.8 23 0.00049 35.8 12.7 172 146-379 18-201 (263)
82 TIGR01163 rpe ribulose-phospha 83.6 35 0.00076 31.1 16.9 179 148-420 3-192 (210)
83 cd04732 HisA HisA. Phosphorib 83.4 7.3 0.00016 36.3 8.7 60 316-378 19-78 (234)
84 PRK09613 thiH thiamine biosynt 82.7 6.8 0.00015 42.1 9.1 109 150-290 112-238 (469)
85 TIGR01303 IMP_DH_rel_1 IMP deh 82.2 10 0.00023 40.7 10.3 50 158-220 225-274 (475)
86 cd00429 RPE Ribulose-5-phospha 81.9 40 0.00086 30.6 16.4 52 148-210 4-56 (211)
87 cd02933 OYE_like_FMN Old yello 81.5 8.7 0.00019 39.1 9.1 169 159-375 154-334 (338)
88 PRK00865 glutamate racemase; P 81.4 31 0.00067 33.7 12.5 151 202-373 20-200 (261)
89 TIGR02320 PEP_mutase phosphoen 81.2 31 0.00068 34.8 12.7 124 241-420 90-239 (285)
90 TIGR00875 fsa_talC_mipB fructo 81.1 7.3 0.00016 37.7 7.9 76 247-369 110-193 (213)
91 PF01177 Asp_Glu_race: Asp/Glu 81.0 1.8 4E-05 39.3 3.7 159 203-377 13-205 (216)
92 PRK09490 metH B12-dependent me 80.8 20 0.00043 43.1 12.8 170 242-422 288-488 (1229)
93 PF13714 PEP_mutase: Phosphoen 80.6 9.6 0.00021 37.4 8.7 125 113-280 59-190 (238)
94 PRK09282 pyruvate carboxylase 80.5 93 0.002 34.6 17.0 196 147-395 17-222 (592)
95 cd00564 TMP_TenI Thiamine mono 80.4 8.2 0.00018 34.1 7.5 61 340-420 113-177 (196)
96 PRK06512 thiamine-phosphate py 80.3 6.8 0.00015 37.8 7.5 60 340-419 129-190 (221)
97 PRK12331 oxaloacetate decarbox 80.1 11 0.00023 40.4 9.4 227 147-423 87-344 (448)
98 TIGR03332 salvage_mtnW 2,3-dik 80.1 5.1 0.00011 42.5 7.0 138 242-420 151-299 (407)
99 cd08209 RLP_DK-MTP-1-P-enolase 79.9 5 0.00011 42.3 6.9 136 243-420 137-284 (391)
100 cd02932 OYE_YqiM_FMN Old yello 79.9 18 0.00039 36.3 10.6 95 158-266 155-261 (336)
101 TIGR01108 oadA oxaloacetate de 79.8 7.8 0.00017 42.7 8.6 219 156-422 90-335 (582)
102 PRK09282 pyruvate carboxylase 78.7 25 0.00055 38.9 12.1 219 157-423 96-341 (592)
103 TIGR01108 oadA oxaloacetate de 78.4 1.2E+02 0.0025 33.8 19.0 198 147-395 12-217 (582)
104 cd08207 RLP_NonPhot Ribulose b 78.2 7.4 0.00016 41.3 7.5 135 243-420 156-300 (406)
105 TIGR01302 IMP_dehydrog inosine 77.9 19 0.00041 38.1 10.5 48 157-217 223-270 (450)
106 PRK06843 inosine 5-monophospha 77.9 23 0.00049 37.7 11.0 50 158-220 153-203 (404)
107 TIGR03699 mena_SCO4550 menaqui 77.7 5.9 0.00013 39.6 6.4 88 318-419 67-158 (340)
108 PRK12330 oxaloacetate decarbox 77.4 9.7 0.00021 41.4 8.3 260 106-421 56-342 (499)
109 COG5016 Pyruvate/oxaloacetate 77.4 12 0.00027 40.3 8.8 205 151-406 92-326 (472)
110 cd08556 GDPD Glycerophosphodie 77.4 5.1 0.00011 35.3 5.3 112 271-421 76-188 (189)
111 PRK05581 ribulose-phosphate 3- 77.3 60 0.0013 29.9 16.1 53 148-211 8-61 (220)
112 TIGR03700 mena_SCO4494 putativ 77.3 5.8 0.00012 40.3 6.3 59 148-217 74-132 (351)
113 cd08148 RuBisCO_large Ribulose 77.2 6.9 0.00015 40.9 6.9 135 243-420 140-286 (366)
114 TIGR00222 panB 3-methyl-2-oxob 77.2 3 6.6E-05 41.8 4.2 156 158-343 93-254 (263)
115 PRK12653 fructose-6-phosphate 76.8 14 0.00031 35.9 8.5 76 248-370 113-196 (220)
116 PRK08508 biotin synthase; Prov 76.6 27 0.00059 34.4 10.5 59 149-216 35-94 (279)
117 cd04739 DHOD_like Dihydroorota 76.2 49 0.0011 33.5 12.5 42 361-421 225-266 (325)
118 PF13714 PEP_mutase: Phosphoen 76.1 12 0.00025 36.8 7.8 179 166-424 25-222 (238)
119 PRK05458 guanosine 5'-monophos 75.7 10 0.00022 39.1 7.5 49 159-220 98-149 (326)
120 PRK01362 putative translaldola 75.5 13 0.00028 36.1 7.9 77 247-370 110-194 (214)
121 PRK09549 mtnW 2,3-diketo-5-met 75.4 8 0.00017 41.1 6.9 136 243-420 147-294 (407)
122 TIGR01496 DHPS dihydropteroate 75.0 19 0.00042 35.4 9.0 101 314-422 12-126 (257)
123 TIGR02320 PEP_mutase phosphoen 73.9 19 0.00041 36.3 8.8 115 158-291 93-215 (285)
124 cd00956 Transaldolase_FSA Tran 73.9 11 0.00024 36.1 6.8 72 249-370 112-194 (211)
125 PRK12655 fructose-6-phosphate 73.9 14 0.0003 36.0 7.6 79 244-369 109-195 (220)
126 PRK07360 FO synthase subunit 2 73.8 6.6 0.00014 40.3 5.7 57 149-215 87-143 (371)
127 PRK09490 metH B12-dependent me 73.0 1.1E+02 0.0023 37.3 15.8 222 158-418 65-310 (1229)
128 cd00423 Pterin_binding Pterin 72.9 26 0.00057 34.1 9.3 92 326-422 21-128 (258)
129 CHL00040 rbcL ribulose-1,5-bis 72.9 11 0.00023 41.0 7.2 135 243-420 180-328 (475)
130 PRK14041 oxaloacetate decarbox 72.6 27 0.00058 37.7 10.1 222 156-423 94-340 (467)
131 TIGR00007 phosphoribosylformim 72.4 86 0.0019 29.4 16.0 126 256-419 91-216 (230)
132 cd01573 modD_like ModD; Quinol 72.0 4.7 0.0001 40.1 4.0 78 321-430 186-266 (272)
133 PRK00748 1-(5-phosphoribosyl)- 72.0 87 0.0019 29.3 15.0 39 340-378 157-195 (233)
134 TIGR02151 IPP_isom_2 isopenten 72.0 23 0.00049 36.0 9.0 103 297-420 100-209 (333)
135 cd08213 RuBisCO_large_III Ribu 71.6 9.7 0.00021 40.5 6.4 135 243-420 144-291 (412)
136 PRK12581 oxaloacetate decarbox 71.6 13 0.00028 40.2 7.4 257 106-421 64-351 (468)
137 PRK05926 hypothetical protein; 71.3 9.5 0.00021 39.6 6.2 88 316-420 92-185 (370)
138 PLN02424 ketopantoate hydroxym 71.2 47 0.001 34.7 11.1 135 200-379 84-223 (332)
139 TIGR00078 nadC nicotinate-nucl 70.9 7.5 0.00016 38.6 5.2 87 302-421 161-250 (265)
140 TIGR00423 radical SAM domain p 70.8 14 0.00031 36.6 7.1 87 319-419 32-122 (309)
141 TIGR03326 rubisco_III ribulose 70.5 12 0.00027 39.7 6.9 136 243-421 157-305 (412)
142 TIGR01949 AroFGH_arch predicte 70.0 50 0.0011 32.0 10.5 72 339-424 100-179 (258)
143 PRK08445 hypothetical protein; 69.9 13 0.00029 38.0 6.9 60 147-217 67-126 (348)
144 cd03174 DRE_TIM_metallolyase D 69.9 99 0.0022 29.1 17.5 184 147-395 11-215 (265)
145 PRK04208 rbcL ribulose bisopho 69.9 13 0.00028 40.3 6.9 135 243-420 173-321 (468)
146 PRK09234 fbiC FO synthase; Rev 69.5 10 0.00022 43.7 6.4 59 148-217 552-610 (843)
147 PF00016 RuBisCO_large: Ribulo 69.1 11 0.00023 38.8 5.9 136 243-420 27-175 (309)
148 COG0269 SgbH 3-hexulose-6-phos 68.6 4 8.7E-05 40.2 2.7 149 194-420 40-191 (217)
149 PF01487 DHquinase_I: Type I 3 68.6 11 0.00023 35.6 5.4 91 325-422 6-121 (224)
150 PF12010 DUF3502: Domain of un 68.3 8 0.00017 34.5 4.3 45 390-434 90-134 (134)
151 PRK09140 2-dehydro-3-deoxy-6-p 67.9 39 0.00085 32.3 9.1 62 157-234 22-89 (206)
152 cd04730 NPD_like 2-Nitropropan 67.9 98 0.0021 28.9 11.6 62 340-420 120-184 (236)
153 cd08208 RLP_Photo Ribulose bis 67.9 14 0.0003 39.6 6.6 135 243-420 173-317 (424)
154 TIGR00693 thiE thiamine-phosph 67.8 25 0.00054 32.0 7.5 61 340-420 114-179 (196)
155 PRK12656 fructose-6-phosphate 67.8 7.4 0.00016 38.1 4.3 51 243-294 110-168 (222)
156 PLN02274 inosine-5'-monophosph 67.7 19 0.0004 39.1 7.7 67 158-264 248-315 (505)
157 TIGR00737 nifR3_yhdG putative 67.7 30 0.00065 34.6 8.6 88 319-419 65-165 (319)
158 PLN02428 lipoic acid synthase 67.7 1.4E+02 0.003 31.4 13.6 226 111-396 64-315 (349)
159 PTZ00314 inosine-5'-monophosph 67.6 58 0.0013 35.2 11.3 68 158-264 241-308 (495)
160 cd04724 Tryptophan_synthase_al 67.4 1.3E+02 0.0027 29.3 14.0 162 158-378 15-192 (242)
161 cd06556 ICL_KPHMT Members of t 67.0 99 0.0021 30.5 11.9 123 158-311 90-216 (240)
162 PRK06552 keto-hydroxyglutarate 66.5 17 0.00037 35.1 6.4 52 141-215 107-158 (213)
163 cd08206 RuBisCO_large_I_II_III 66.5 11 0.00024 40.1 5.6 135 243-420 145-293 (414)
164 PRK08072 nicotinate-nucleotide 66.5 11 0.00024 37.9 5.4 125 243-421 135-260 (277)
165 KOG2335 tRNA-dihydrouridine sy 66.4 7.1 0.00015 41.0 4.1 78 157-243 155-241 (358)
166 PLN02877 alpha-amylase/limit d 66.4 1.1E+02 0.0024 36.2 13.9 155 127-283 339-579 (970)
167 TIGR03700 mena_SCO4494 putativ 66.3 21 0.00046 36.3 7.4 88 318-419 74-165 (351)
168 PRK12928 lipoyl synthase; Prov 66.2 42 0.0009 33.8 9.3 130 151-295 85-243 (290)
169 TIGR01305 GMP_reduct_1 guanosi 66.0 60 0.0013 34.2 10.6 46 159-217 108-155 (343)
170 PF00072 Response_reg: Respons 65.8 30 0.00066 27.3 6.8 62 325-396 29-94 (112)
171 TIGR02990 ectoine_eutA ectoine 65.5 15 0.00032 36.1 5.9 120 255-391 97-224 (239)
172 PRK08999 hypothetical protein; 65.3 21 0.00046 35.0 7.0 72 324-419 232-306 (312)
173 cd02810 DHOD_DHPD_FMN Dihydroo 64.8 26 0.00056 34.0 7.4 66 341-420 123-195 (289)
174 TIGR02321 Pphn_pyruv_hyd phosp 64.5 47 0.001 33.7 9.4 125 200-377 64-209 (290)
175 cd04739 DHOD_like Dihydroorota 64.4 31 0.00068 34.9 8.1 64 341-420 124-194 (325)
176 PF02548 Pantoate_transf: Keto 64.4 15 0.00032 37.1 5.7 145 251-431 28-193 (261)
177 PRK09234 fbiC FO synthase; Rev 64.2 32 0.0007 39.7 9.0 90 317-420 551-644 (843)
178 PRK07535 methyltetrahydrofolat 64.0 26 0.00056 34.7 7.3 92 326-422 22-124 (261)
179 cd08212 RuBisCO_large_I Ribulo 63.9 21 0.00045 38.5 7.1 134 243-420 158-305 (450)
180 TIGR02319 CPEP_Pphonmut carbox 63.6 88 0.0019 32.0 11.1 128 113-280 67-200 (294)
181 TIGR00126 deoC deoxyribose-pho 63.6 69 0.0015 31.0 10.0 136 240-423 15-156 (211)
182 PRK08645 bifunctional homocyst 63.2 2.5E+02 0.0053 31.2 15.4 154 244-418 248-413 (612)
183 cd02932 OYE_YqiM_FMN Old yello 63.2 97 0.0021 31.2 11.3 111 242-378 150-295 (336)
184 cd00951 KDGDH 5-dehydro-4-deox 63.1 15 0.00032 36.3 5.5 108 234-383 13-135 (289)
185 PRK13306 ulaD 3-keto-L-gulonat 63.0 30 0.00066 33.2 7.4 55 188-267 34-88 (216)
186 cd00429 RPE Ribulose-5-phospha 62.4 45 0.00097 30.2 8.1 98 321-421 7-112 (211)
187 PRK11320 prpB 2-methylisocitra 62.4 1.4E+02 0.003 30.6 12.2 101 158-281 94-199 (292)
188 PLN02424 ketopantoate hydroxym 62.2 18 0.00039 37.7 6.0 145 251-431 47-213 (332)
189 PF01136 Peptidase_U32: Peptid 62.1 1.1E+02 0.0024 28.7 10.8 89 158-293 3-92 (233)
190 PRK14040 oxaloacetate decarbox 61.9 37 0.00081 37.7 8.8 223 149-418 90-336 (593)
191 cd00502 DHQase_I Type I 3-dehy 61.1 27 0.00057 33.1 6.6 93 327-423 11-122 (225)
192 PRK13523 NADPH dehydrogenase N 61.1 1E+02 0.0022 31.6 11.2 109 241-378 137-280 (337)
193 PRK08444 hypothetical protein; 61.0 24 0.00051 36.5 6.7 110 289-419 51-166 (353)
194 cd08211 RuBisCO_large_II Ribul 61.0 29 0.00062 37.5 7.5 136 243-420 170-321 (439)
195 PRK02615 thiamine-phosphate py 61.0 29 0.00062 36.2 7.3 70 326-419 248-320 (347)
196 PF04131 NanE: Putative N-acet 60.8 49 0.0011 32.3 8.3 48 159-220 53-100 (192)
197 PRK00748 1-(5-phosphoribosyl)- 60.5 60 0.0013 30.3 8.8 50 326-378 30-79 (233)
198 smart00642 Aamy Alpha-amylase 60.5 45 0.00097 30.7 7.7 68 155-226 18-97 (166)
199 cd08602 GDPD_ScGlpQ1_like Glyc 60.4 44 0.00096 33.6 8.4 52 363-422 257-308 (309)
200 PRK15424 propionate catabolism 60.2 24 0.00052 38.6 6.9 115 286-421 15-162 (538)
201 cd01571 NAPRTase_B Nicotinate 60.2 23 0.0005 35.8 6.3 64 199-291 170-249 (302)
202 PRK07428 nicotinate-nucleotide 59.8 17 0.00036 36.9 5.2 92 300-424 177-274 (288)
203 TIGR01235 pyruv_carbox pyruvat 59.7 32 0.00069 41.0 8.2 224 156-418 624-870 (1143)
204 cd00381 IMPDH IMPDH: The catal 59.7 44 0.00094 34.0 8.2 68 158-264 94-161 (325)
205 PRK13125 trpA tryptophan synth 59.6 31 0.00068 33.3 6.9 60 362-421 63-136 (244)
206 TIGR00423 radical SAM domain p 59.5 22 0.00049 35.3 6.0 57 149-216 32-88 (309)
207 COG3543 Uncharacterized conser 59.2 7 0.00015 36.1 2.2 40 201-244 31-74 (135)
208 cd02072 Glm_B12_BD B12 binding 59.1 15 0.00032 33.3 4.3 49 241-292 35-86 (128)
209 TIGR00007 phosphoribosylformim 58.4 56 0.0012 30.6 8.2 60 316-378 18-77 (230)
210 cd01568 QPRTase_NadC Quinolina 58.2 35 0.00075 33.9 7.1 70 318-420 181-254 (269)
211 cd04725 OMP_decarboxylase_like 58.1 24 0.00052 33.5 5.8 72 323-419 5-81 (216)
212 TIGR00640 acid_CoA_mut_C methy 58.1 15 0.00033 32.9 4.1 48 242-292 39-89 (132)
213 PF02219 MTHFR: Methylenetetra 58.0 40 0.00088 33.3 7.5 114 158-290 86-203 (287)
214 PRK03620 5-dehydro-4-deoxygluc 57.9 20 0.00042 35.8 5.3 117 234-392 20-154 (303)
215 cd04732 HisA HisA. Phosphorib 57.5 1.7E+02 0.0036 27.4 20.5 168 152-378 26-195 (234)
216 cd07940 DRE_TIM_IPMS 2-isoprop 57.5 25 0.00054 34.2 5.9 90 148-269 135-224 (268)
217 PRK12999 pyruvate carboxylase; 56.8 4.3E+02 0.0093 31.9 21.0 202 132-381 532-741 (1146)
218 PRK02412 aroD 3-dehydroquinate 56.8 63 0.0014 31.7 8.5 91 325-422 24-143 (253)
219 PRK08508 biotin synthase; Prov 56.7 52 0.0011 32.5 8.0 79 319-419 35-117 (279)
220 PRK13753 dihydropteroate synth 56.5 44 0.00095 34.0 7.5 102 311-422 10-127 (279)
221 TIGR02313 HpaI-NOT-DapA 2,4-di 56.4 23 0.00049 35.2 5.5 110 234-384 13-138 (294)
222 COG0646 MetH Methionine syntha 56.1 18 0.0004 37.4 4.9 161 233-418 40-224 (311)
223 PRK01261 aroD 3-dehydroquinate 56.0 28 0.00061 34.1 5.9 101 322-426 26-131 (229)
224 PRK07360 FO synthase subunit 2 56.0 65 0.0014 33.2 8.8 99 300-419 74-178 (371)
225 cd07945 DRE_TIM_CMS Leptospira 55.9 22 0.00048 35.4 5.3 82 152-267 143-224 (280)
226 TIGR00284 dihydropteroate synt 55.9 1.5E+02 0.0034 32.4 12.0 43 219-264 138-183 (499)
227 TIGR01334 modD putative molybd 55.8 22 0.00048 35.9 5.3 88 304-421 174-263 (277)
228 PRK09240 thiH thiamine biosynt 55.6 24 0.00052 36.3 5.7 53 151-213 102-154 (371)
229 PRK05742 nicotinate-nucleotide 55.5 23 0.0005 35.7 5.4 70 320-422 191-262 (277)
230 cd07938 DRE_TIM_HMGL 3-hydroxy 55.4 22 0.00047 35.3 5.2 96 160-270 76-173 (274)
231 cd01942 ribokinase_group_A Rib 55.4 23 0.00049 33.2 5.1 152 212-385 1-160 (279)
232 cd04734 OYE_like_3_FMN Old yel 55.3 68 0.0015 32.8 8.8 95 159-267 143-250 (343)
233 TIGR01182 eda Entner-Doudoroff 55.2 2.1E+02 0.0045 27.8 18.2 151 157-419 20-174 (204)
234 cd03307 Mta_CmuA_like MtaA_Cmu 55.2 35 0.00076 33.9 6.6 155 198-360 113-313 (326)
235 TIGR00674 dapA dihydrodipicoli 54.8 86 0.0019 30.8 9.1 110 152-294 15-131 (285)
236 PRK05096 guanosine 5'-monophos 54.7 49 0.0011 34.9 7.7 67 158-263 108-176 (346)
237 PRK05286 dihydroorotate dehydr 54.6 49 0.0011 33.8 7.7 75 332-421 159-245 (344)
238 cd02801 DUS_like_FMN Dihydrour 54.5 67 0.0014 29.8 7.9 85 319-418 57-155 (231)
239 PRK06015 keto-hydroxyglutarate 54.1 24 0.00053 34.0 5.1 55 141-217 95-149 (201)
240 cd04729 NanE N-acetylmannosami 54.0 1.9E+02 0.0042 27.1 11.1 108 235-378 19-128 (219)
241 TIGR00736 nifR3_rel_arch TIM-b 53.9 30 0.00065 34.0 5.8 58 339-419 158-218 (231)
242 cd02931 ER_like_FMN Enoate red 53.7 70 0.0015 33.2 8.7 109 160-268 153-274 (382)
243 cd04731 HisF The cyclase subun 53.7 2E+02 0.0044 27.3 14.9 167 158-378 28-198 (243)
244 PLN00191 enolase 53.7 52 0.0011 35.5 7.9 125 273-421 246-395 (457)
245 cd04724 Tryptophan_synthase_al 53.5 59 0.0013 31.5 7.7 60 360-419 63-134 (242)
246 PRK05692 hydroxymethylglutaryl 53.0 27 0.00058 35.0 5.4 91 160-270 82-179 (287)
247 cd00958 DhnA Class I fructose- 52.7 1.7E+02 0.0036 27.7 10.4 22 403-424 145-166 (235)
248 PRK12330 oxaloacetate decarbox 52.5 3.6E+02 0.0078 29.8 17.7 196 147-395 18-225 (499)
249 TIGR00262 trpA tryptophan synt 52.4 1.6E+02 0.0034 29.1 10.5 58 361-418 74-144 (256)
250 TIGR02351 thiH thiazole biosyn 52.4 25 0.00054 36.1 5.2 57 147-214 98-154 (366)
251 cd00408 DHDPS-like Dihydrodipi 52.3 97 0.0021 29.9 9.0 110 152-294 14-130 (281)
252 TIGR00035 asp_race aspartate r 51.8 89 0.0019 29.8 8.5 90 210-307 34-139 (229)
253 cd04735 OYE_like_4_FMN Old yel 51.7 62 0.0013 33.1 7.8 96 159-268 146-257 (353)
254 COG0685 MetF 5,10-methylenetet 51.6 2.3E+02 0.0049 28.6 11.7 129 141-291 78-207 (291)
255 cd02811 IDI-2_FMN Isopentenyl- 51.5 68 0.0015 32.6 8.1 98 301-419 102-207 (326)
256 PRK07475 hypothetical protein; 51.4 1E+02 0.0022 30.1 8.9 125 243-380 62-226 (245)
257 TIGR01740 pyrF orotidine 5'-ph 51.1 40 0.00086 31.9 6.0 74 323-421 5-83 (213)
258 cd00952 CHBPH_aldolase Trans-o 50.9 29 0.00063 34.8 5.3 107 236-383 23-145 (309)
259 PRK05458 guanosine 5'-monophos 50.6 47 0.001 34.4 6.8 47 329-382 96-149 (326)
260 PF00682 HMGL-like: HMGL-like 50.5 11 0.00024 35.3 2.2 84 149-266 130-213 (237)
261 PRK07094 biotin synthase; Prov 50.3 71 0.0015 31.6 7.8 53 150-214 67-119 (323)
262 PRK10605 N-ethylmaleimide redu 50.3 3.1E+02 0.0068 28.4 15.7 49 329-378 248-297 (362)
263 TIGR03151 enACPred_II putative 50.3 66 0.0014 32.5 7.7 48 326-378 117-166 (307)
264 PRK05096 guanosine 5'-monophos 50.1 37 0.0008 35.8 6.0 58 335-419 115-177 (346)
265 TIGR00587 nfo apurinic endonuc 50.1 1.1E+02 0.0023 29.9 8.9 101 152-268 6-112 (274)
266 PRK13585 1-(5-phosphoribosyl)- 50.1 87 0.0019 29.6 8.1 60 316-378 22-81 (241)
267 PRK07455 keto-hydroxyglutarate 49.9 53 0.0011 30.8 6.5 150 157-418 24-177 (187)
268 TIGR00190 thiC thiamine biosyn 49.8 95 0.0021 33.6 9.0 98 324-435 72-176 (423)
269 PF00128 Alpha-amylase: Alpha 49.7 20 0.00043 33.3 3.7 66 158-230 5-82 (316)
270 PRK05926 hypothetical protein; 49.6 27 0.00059 36.3 5.0 120 147-286 93-222 (370)
271 cd02930 DCR_FMN 2,4-dienoyl-Co 49.4 1.2E+02 0.0025 31.0 9.3 170 159-372 139-323 (353)
272 cd02803 OYE_like_FMN_family Ol 49.3 2.7E+02 0.0059 27.5 13.0 178 195-419 27-246 (327)
273 cd04726 KGPDC_HPS 3-Keto-L-gul 49.3 1.6E+02 0.0034 26.8 9.3 93 323-425 7-117 (202)
274 TIGR03550 F420_cofG 7,8-dideme 49.1 56 0.0012 32.9 7.0 115 149-285 31-163 (322)
275 cd01572 QPRTase Quinolinate ph 49.1 48 0.001 33.0 6.5 67 321-420 185-253 (268)
276 TIGR00510 lipA lipoate synthas 48.7 2.9E+02 0.0063 28.2 12.0 55 353-419 182-240 (302)
277 TIGR01769 GGGP geranylgeranylg 48.7 24 0.00053 34.1 4.2 54 322-379 4-59 (205)
278 PLN02743 nicotinamidase 48.6 54 0.0012 32.2 6.6 83 165-264 145-235 (239)
279 COG2040 MHT1 Homocysteine/sele 47.9 15 0.00032 37.9 2.7 26 395-420 37-62 (300)
280 PF00478 IMPDH: IMP dehydrogen 47.8 39 0.00085 35.4 5.8 53 340-419 118-175 (352)
281 cd00381 IMPDH IMPDH: The catal 47.6 86 0.0019 32.0 8.1 48 329-380 93-142 (325)
282 PRK12383 putative mutase; Prov 47.4 34 0.00074 36.5 5.4 75 154-233 229-306 (406)
283 TIGR01921 DAP-DH diaminopimela 47.4 31 0.00068 35.7 5.0 84 249-336 74-182 (324)
284 PLN02808 alpha-galactosidase 47.4 2E+02 0.0044 30.6 11.0 100 166-285 63-178 (386)
285 PRK01033 imidazole glycerol ph 47.3 41 0.00088 32.9 5.5 46 340-388 41-86 (258)
286 PRK05567 inosine 5'-monophosph 47.2 1.5E+02 0.0032 31.8 10.1 93 160-292 230-336 (486)
287 PF01964 ThiC: ThiC family; I 47.2 40 0.00087 36.3 5.8 96 326-434 73-174 (420)
288 COG0320 LipA Lipoate synthase 47.1 29 0.00063 35.9 4.6 57 351-419 186-246 (306)
289 cd02809 alpha_hydroxyacid_oxid 47.1 78 0.0017 31.5 7.6 54 324-381 127-180 (299)
290 TIGR02329 propionate_PrpR prop 47.0 56 0.0012 35.6 7.1 121 287-428 6-160 (526)
291 TIGR03699 mena_SCO4550 menaqui 47.0 35 0.00076 34.2 5.2 57 149-216 68-124 (340)
292 PRK15381 pathogenicity island 46.8 40 0.00087 35.8 5.8 61 158-219 262-333 (408)
293 TIGR00510 lipA lipoate synthas 46.8 53 0.0012 33.4 6.4 172 111-294 30-245 (302)
294 PRK03170 dihydrodipicolinate s 46.7 40 0.00088 33.0 5.5 106 235-381 15-135 (292)
295 TIGR01303 IMP_DH_rel_1 IMP deh 46.6 39 0.00084 36.5 5.7 58 339-419 234-292 (475)
296 PRK13585 1-(5-phosphoribosyl)- 46.5 2.6E+02 0.0056 26.4 19.6 187 158-420 33-221 (241)
297 CHL00148 orf27 Ycf27; Reviewed 46.2 1.9E+02 0.0041 25.7 9.2 65 327-398 38-102 (240)
298 PRK02227 hypothetical protein; 46.1 82 0.0018 31.6 7.4 46 322-378 4-57 (238)
299 cd01945 ribokinase_group_B Rib 46.1 1.1E+02 0.0025 28.7 8.2 36 250-285 41-77 (284)
300 COG2513 PrpB PEP phosphonomuta 46.0 1.2E+02 0.0026 31.3 8.8 104 158-283 94-201 (289)
301 COG2197 CitB Response regulato 46.0 70 0.0015 30.2 6.8 93 326-430 33-132 (211)
302 cd04723 HisA_HisF Phosphoribos 45.8 1.1E+02 0.0024 29.4 8.2 86 316-424 19-111 (233)
303 cd07937 DRE_TIM_PC_TC_5S Pyruv 45.7 1.4E+02 0.0031 29.5 9.1 93 147-271 82-174 (275)
304 PRK05437 isopentenyl pyrophosp 45.3 97 0.0021 32.0 8.1 94 306-419 115-215 (352)
305 PLN02746 hydroxymethylglutaryl 45.3 36 0.00078 35.4 5.1 91 160-270 124-221 (347)
306 PF02574 S-methyl_trans: Homoc 45.2 15 0.00032 36.4 2.2 23 399-421 39-61 (305)
307 PTZ00314 inosine-5'-monophosph 45.0 42 0.00092 36.3 5.7 64 329-419 240-308 (495)
308 PRK13535 erythrose 4-phosphate 44.7 21 0.00046 36.9 3.3 52 271-323 10-77 (336)
309 PLN02520 bifunctional 3-dehydr 44.7 86 0.0019 34.1 8.0 97 324-423 30-144 (529)
310 TIGR00977 LeuA_rel 2-isopropyl 44.3 2.2E+02 0.0048 31.2 11.0 155 244-418 21-227 (526)
311 cd03322 rpsA The starvation se 44.2 2.3E+02 0.0049 29.0 10.5 112 158-291 129-269 (361)
312 cd00537 MTHFR Methylenetetrahy 44.1 1.2E+02 0.0026 29.6 8.2 90 330-431 73-180 (274)
313 PF00809 Pterin_bind: Pterin b 43.7 65 0.0014 30.6 6.2 92 328-423 18-125 (210)
314 PF06506 PrpR_N: Propionate ca 43.5 39 0.00084 30.9 4.5 91 325-428 16-140 (176)
315 cd08555 PI-PLCc_GDPD_SF Cataly 43.5 1.5E+02 0.0031 27.0 8.2 42 361-422 138-179 (179)
316 PF04898 Glu_syn_central: Glut 43.3 45 0.00097 34.2 5.3 54 241-294 137-201 (287)
317 PRK09485 mmuM homocysteine met 43.1 20 0.00042 36.0 2.7 24 397-420 42-65 (304)
318 TIGR01501 MthylAspMutase methy 43.0 35 0.00076 31.0 4.1 48 241-291 37-87 (134)
319 COG0329 DapA Dihydrodipicolina 43.0 48 0.001 33.3 5.4 114 235-383 18-140 (299)
320 TIGR03128 RuMP_HxlA 3-hexulose 42.8 1.5E+02 0.0033 27.2 8.3 45 323-377 6-56 (206)
321 PRK05927 hypothetical protein; 42.6 70 0.0015 33.1 6.6 87 319-419 72-162 (350)
322 PRK13307 bifunctional formalde 42.5 2.7E+02 0.0058 29.7 10.9 162 208-419 102-281 (391)
323 PRK13111 trpA tryptophan synth 42.4 1.3E+02 0.0028 30.0 8.2 109 158-295 27-153 (258)
324 PRK00507 deoxyribose-phosphate 42.1 1.3E+02 0.0027 29.4 8.0 133 240-420 19-155 (221)
325 TIGR01182 eda Entner-Doudoroff 42.0 39 0.00085 32.7 4.5 70 142-233 100-174 (204)
326 TIGR02317 prpB methylisocitrat 41.9 2.7E+02 0.0058 28.4 10.5 102 158-280 89-196 (285)
327 PLN02540 methylenetetrahydrofo 41.8 4.2E+02 0.0091 29.8 12.7 130 146-289 58-199 (565)
328 cd07941 DRE_TIM_LeuA3 Desulfob 41.4 59 0.0013 32.0 5.7 82 151-266 146-227 (273)
329 PRK06256 biotin synthase; Vali 41.4 93 0.002 31.0 7.2 72 327-419 92-167 (336)
330 PRK10415 tRNA-dihydrouridine s 41.3 1.4E+02 0.003 30.4 8.4 87 320-419 68-167 (321)
331 PRK13587 1-(5-phosphoribosyl)- 41.3 1.6E+02 0.0034 28.6 8.5 84 315-419 20-103 (234)
332 cd02801 DUS_like_FMN Dihydrour 41.3 1.6E+02 0.0034 27.3 8.2 106 111-220 11-131 (231)
333 cd07939 DRE_TIM_NifV Streptomy 41.3 51 0.0011 32.0 5.2 90 147-271 130-219 (259)
334 PF01884 PcrB: PcrB family; I 41.2 27 0.00058 34.6 3.3 46 327-379 20-65 (230)
335 PRK08445 hypothetical protein; 41.1 1.2E+02 0.0026 31.3 8.0 89 319-418 69-158 (348)
336 PRK07729 glyceraldehyde-3-phos 41.1 16 0.00036 38.0 1.9 52 271-323 11-75 (343)
337 PF00701 DHDPS: Dihydrodipicol 41.0 43 0.00093 32.7 4.7 107 234-381 14-135 (289)
338 PF05582 Peptidase_U57: YabG p 40.8 23 0.0005 36.4 2.8 72 141-237 98-171 (287)
339 cd00954 NAL N-Acetylneuraminic 40.8 2.5E+02 0.0054 27.7 9.9 110 153-294 18-135 (288)
340 PRK07114 keto-hydroxyglutarate 40.7 46 0.001 32.6 4.8 54 141-217 110-163 (222)
341 cd07944 DRE_TIM_HOA_like 4-hyd 40.5 1.9E+02 0.0042 28.5 9.1 208 146-370 11-237 (266)
342 PRK13306 ulaD 3-keto-L-gulonat 40.4 51 0.0011 31.6 5.0 72 323-421 10-87 (216)
343 PRK07226 fructose-bisphosphate 40.3 1.9E+02 0.0042 28.3 9.1 132 158-347 94-229 (267)
344 cd01846 fatty_acyltransferase_ 40.2 1.1E+02 0.0024 28.9 7.1 61 158-219 132-205 (270)
345 PRK08185 hypothetical protein; 40.2 34 0.00074 34.7 3.9 82 325-410 148-242 (283)
346 PRK13352 thiamine biosynthesis 40.1 1.9E+02 0.0041 31.5 9.5 101 324-435 72-179 (431)
347 PRK10955 DNA-binding transcrip 39.9 1.4E+02 0.0029 26.5 7.3 65 326-398 32-96 (232)
348 TIGR02855 spore_yabG sporulati 39.6 25 0.00054 36.1 2.9 67 146-237 102-170 (283)
349 KOG3111 D-ribulose-5-phosphate 39.3 28 0.00062 34.5 3.1 150 243-420 14-196 (224)
350 PRK07107 inosine 5-monophospha 39.2 64 0.0014 35.1 6.0 62 330-418 242-309 (502)
351 cd02940 DHPD_FMN Dihydropyrimi 39.2 83 0.0018 31.3 6.4 74 330-419 113-198 (299)
352 cd08562 GDPD_EcUgpQ_like Glyce 39.0 2.6E+02 0.0057 25.8 9.3 116 264-422 109-228 (229)
353 KOG1579 Homocysteine S-methylt 38.9 24 0.00052 36.7 2.6 24 397-420 49-72 (317)
354 COG3010 NanE Putative N-acetyl 38.9 1.9E+02 0.0041 29.1 8.6 124 253-431 92-223 (229)
355 TIGR00683 nanA N-acetylneurami 38.6 63 0.0014 32.1 5.5 109 234-383 13-138 (290)
356 PLN02489 homocysteine S-methyl 38.5 26 0.00056 35.9 2.8 24 397-420 51-74 (335)
357 PRK08318 dihydropyrimidine deh 38.2 90 0.0019 32.4 6.7 73 330-419 113-198 (420)
358 TIGR00284 dihydropteroate synt 38.0 73 0.0016 34.8 6.2 88 329-421 165-258 (499)
359 PRK10766 DNA-binding transcrip 37.7 1.7E+02 0.0038 25.8 7.6 65 327-398 34-98 (221)
360 PRK15108 biotin synthase; Prov 37.6 1.1E+02 0.0024 31.4 7.1 101 288-417 43-149 (345)
361 cd00740 MeTr MeTr subgroup of 37.6 1.5E+02 0.0032 29.3 7.8 90 326-422 23-127 (252)
362 PRK07107 inosine 5-monophospha 37.6 1.6E+02 0.0035 32.1 8.7 99 150-263 173-309 (502)
363 PRK14542 nucleoside diphosphat 37.5 48 0.001 30.1 4.0 95 262-409 7-103 (137)
364 PRK07896 nicotinate-nucleotide 37.3 58 0.0013 33.3 5.0 91 300-420 181-273 (289)
365 PRK13475 ribulose bisphosphate 37.3 83 0.0018 34.1 6.4 143 243-420 171-322 (443)
366 TIGR00676 fadh2 5,10-methylene 37.0 4.2E+02 0.0092 26.1 13.6 110 158-285 74-184 (272)
367 TIGR01859 fruc_bis_ald_ fructo 37.0 68 0.0015 32.2 5.4 86 160-266 87-173 (282)
368 cd04742 NPD_FabD 2-Nitropropan 36.8 5.8E+02 0.012 27.6 12.5 135 254-422 90-249 (418)
369 cd01837 SGNH_plant_lipase_like 36.8 79 0.0017 31.1 5.8 61 158-219 165-242 (315)
370 PRK10415 tRNA-dihydrouridine s 36.8 1.6E+02 0.0034 30.0 8.0 39 340-378 160-199 (321)
371 PRK05581 ribulose-phosphate 3- 36.8 1.6E+02 0.0034 27.2 7.4 98 321-421 11-116 (220)
372 PRK05718 keto-hydroxyglutarate 36.7 54 0.0012 31.7 4.5 66 141-228 106-176 (212)
373 TIGR01037 pyrD_sub1_fam dihydr 36.6 83 0.0018 30.9 5.9 40 362-420 223-262 (300)
374 PLN02229 alpha-galactosidase 36.5 2.2E+02 0.0047 30.9 9.3 117 150-285 72-208 (427)
375 COG0176 MipB Transaldolase [Ca 36.5 33 0.00072 34.3 3.1 89 193-286 73-171 (239)
376 PRK13575 3-dehydroquinate dehy 36.3 1.6E+02 0.0034 29.0 7.7 93 328-422 16-133 (238)
377 PRK07534 methionine synthase I 36.3 29 0.00064 35.6 2.8 24 397-420 41-64 (336)
378 KOG2550 IMP dehydrogenase/GMP 36.2 61 0.0013 35.4 5.2 45 159-217 252-297 (503)
379 PF06838 Met_gamma_lyase: Meth 36.2 42 0.00091 36.0 4.0 29 199-227 177-205 (403)
380 PRK04147 N-acetylneuraminate l 35.9 2.7E+02 0.0058 27.6 9.3 109 153-294 21-137 (293)
381 cd01537 PBP1_Repressors_Sugar_ 35.9 1.3E+02 0.0029 26.6 6.6 134 162-300 71-220 (264)
382 cd00950 DHDPS Dihydrodipicolin 35.7 2.1E+02 0.0045 27.9 8.4 110 152-294 17-133 (284)
383 PRK10046 dpiA two-component re 35.7 1.7E+02 0.0037 27.0 7.5 66 326-398 37-103 (225)
384 cd00959 DeoC 2-deoxyribose-5-p 35.7 3.8E+02 0.0082 25.2 9.9 97 158-281 70-172 (203)
385 PRK06096 molybdenum transport 35.6 53 0.0012 33.4 4.5 88 304-422 175-265 (284)
386 PRK14017 galactonate dehydrata 35.6 4.6E+02 0.01 27.0 11.2 128 158-294 127-286 (382)
387 PRK13813 orotidine 5'-phosphat 35.4 59 0.0013 30.3 4.5 43 323-375 10-57 (215)
388 PRK10840 transcriptional regul 35.4 3.4E+02 0.0074 24.6 9.9 81 325-412 35-125 (216)
389 PLN02617 imidazole glycerol ph 35.2 98 0.0021 34.1 6.7 82 324-419 262-352 (538)
390 PRK06843 inosine 5-monophospha 34.8 1E+02 0.0022 33.0 6.5 50 329-381 152-202 (404)
391 cd00439 Transaldolase Transald 34.8 77 0.0017 31.4 5.3 23 243-265 144-166 (252)
392 cd06268 PBP1_ABC_transporter_L 34.7 1.4E+02 0.003 26.9 6.6 95 285-388 135-231 (298)
393 PRK14042 pyruvate carboxylase 34.7 1.1E+02 0.0023 34.3 6.9 212 152-416 22-255 (596)
394 PF09505 Dimeth_Pyl: Dimethyla 34.6 23 0.00049 37.6 1.7 73 185-265 210-285 (466)
395 cd00959 DeoC 2-deoxyribose-5-p 34.6 2.9E+02 0.0063 25.9 8.9 137 240-423 14-155 (203)
396 cd07943 DRE_TIM_HOA 4-hydroxy- 34.4 71 0.0015 31.0 5.0 76 151-263 136-214 (263)
397 COG0107 HisF Imidazoleglycerol 34.3 84 0.0018 32.0 5.5 71 329-418 30-100 (256)
398 cd07947 DRE_TIM_Re_CS Clostrid 34.3 1.4E+02 0.0029 30.1 7.0 102 148-270 67-174 (279)
399 cd04740 DHOD_1B_like Dihydroor 34.2 1.7E+02 0.0037 28.6 7.6 63 341-419 114-184 (296)
400 TIGR01370 cysRS possible cyste 34.2 5E+02 0.011 26.9 11.2 126 155-285 145-298 (315)
401 cd07025 Peptidase_S66 LD-Carbo 34.2 60 0.0013 32.2 4.5 70 261-353 2-73 (282)
402 TIGR00737 nifR3_yhdG putative 34.1 1.1E+02 0.0024 30.6 6.4 39 340-378 158-197 (319)
403 TIGR02198 rfaE_dom_I rfaE bifu 33.9 2.7E+02 0.0058 26.8 8.8 75 209-286 6-89 (315)
404 PRK05481 lipoyl synthase; Prov 33.9 88 0.0019 31.3 5.7 77 129-214 53-133 (289)
405 PRK08255 salicylyl-CoA 5-hydro 33.9 2.1E+02 0.0046 32.4 9.1 94 160-267 554-659 (765)
406 PRK06256 biotin synthase; Vali 33.6 1.6E+02 0.0035 29.4 7.4 55 150-214 87-142 (336)
407 TIGR00126 deoC deoxyribose-pho 33.6 3.7E+02 0.008 26.1 9.6 97 158-281 71-173 (211)
408 cd08563 GDPD_TtGDE_like Glycer 33.5 3.7E+02 0.008 25.2 9.4 112 270-422 117-229 (230)
409 PRK11253 ldcA L,D-carboxypepti 33.5 88 0.0019 31.7 5.6 80 261-362 5-86 (305)
410 PRK00230 orotidine 5'-phosphat 33.4 89 0.0019 30.1 5.4 39 323-371 9-52 (230)
411 PRK10200 putative racemase; Pr 33.3 1.5E+02 0.0032 28.7 6.9 56 374-429 35-96 (230)
412 COG1856 Uncharacterized homolo 33.1 1.6E+02 0.0036 30.0 7.3 82 158-280 43-129 (275)
413 PF09370 TIM-br_sig_trns: TIM- 33.0 48 0.001 33.8 3.6 44 251-295 162-222 (268)
414 PRK12346 transaldolase A; Prov 32.9 59 0.0013 33.6 4.4 19 247-265 158-176 (316)
415 cd06333 PBP1_ABC-type_HAAT_lik 32.9 1.8E+02 0.004 27.6 7.4 50 340-396 186-239 (312)
416 TIGR02709 branched_ptb branche 32.9 3.1E+02 0.0067 27.9 9.3 180 156-371 10-232 (271)
417 PRK07379 coproporphyrinogen II 32.8 1.1E+02 0.0023 31.9 6.3 98 158-294 152-254 (400)
418 PRK08385 nicotinate-nucleotide 32.8 45 0.00097 33.8 3.4 90 300-420 165-258 (278)
419 TIGR01037 pyrD_sub1_fam dihydr 32.7 1.7E+02 0.0037 28.7 7.4 73 330-419 103-187 (300)
420 PF04551 GcpE: GcpE protein; 32.7 37 0.0008 35.9 2.9 47 245-292 30-79 (359)
421 cd08560 GDPD_EcGlpQ_like_1 Gly 32.6 2.7E+02 0.0059 29.1 9.1 62 361-423 280-347 (356)
422 COG5561 Predicted metal-bindin 32.6 48 0.001 29.3 3.1 81 271-377 9-94 (101)
423 TIGR01306 GMP_reduct_2 guanosi 32.3 1.1E+02 0.0023 31.8 6.1 47 328-381 92-145 (321)
424 cd00957 Transaldolase_TalAB Tr 32.3 53 0.0011 33.9 3.9 23 243-265 153-175 (313)
425 cd08612 GDPD_GDE4 Glycerophosp 32.2 1E+02 0.0022 30.6 5.8 49 362-431 251-299 (300)
426 COG2513 PrpB PEP phosphonomuta 32.2 65 0.0014 33.2 4.4 44 328-379 165-208 (289)
427 PTZ00411 transaldolase-like pr 32.2 61 0.0013 33.7 4.3 22 244-265 166-187 (333)
428 PRK06552 keto-hydroxyglutarate 32.1 1.1E+02 0.0025 29.5 5.9 151 158-419 26-181 (213)
429 PRK06245 cofG FO synthase subu 32.1 1.8E+02 0.004 29.1 7.6 31 147-178 34-65 (336)
430 cd06533 Glyco_transf_WecG_TagA 32.1 2E+02 0.0044 26.4 7.3 44 159-217 34-77 (171)
431 cd07938 DRE_TIM_HMGL 3-hydroxy 32.0 1E+02 0.0022 30.7 5.7 83 152-268 145-227 (274)
432 PRK08341 amidophosphoribosyltr 31.9 76 0.0017 34.0 5.1 97 257-386 332-436 (442)
433 PRK08195 4-hyroxy-2-oxovalerat 31.7 1.5E+02 0.0032 30.5 7.0 107 160-299 91-210 (337)
434 PRK15425 gapA glyceraldehyde-3 31.7 32 0.00069 35.7 2.2 52 271-323 11-75 (331)
435 COG1646 Predicted phosphate-bi 31.6 46 0.00099 33.5 3.2 58 320-379 19-76 (240)
436 PRK07094 biotin synthase; Prov 31.6 2E+02 0.0044 28.4 7.7 80 317-419 64-144 (323)
437 PRK05848 nicotinate-nucleotide 31.6 2.5E+02 0.0055 28.4 8.4 56 197-282 166-222 (273)
438 COG0294 FolP Dihydropteroate s 31.6 1.5E+02 0.0031 29.9 6.7 88 329-421 31-136 (274)
439 PRK00668 ndk mulitfunctional n 31.5 27 0.00058 31.1 1.4 46 262-307 7-54 (134)
440 PRK08255 salicylyl-CoA 5-hydro 31.4 4.1E+02 0.0089 30.1 10.9 115 241-378 546-692 (765)
441 PRK00077 eno enolase; Provisio 31.4 2.1E+02 0.0046 30.3 8.2 126 271-420 217-362 (425)
442 COG1038 PycA Pyruvate carboxyl 31.3 1.3E+02 0.0028 35.7 6.9 100 156-280 629-736 (1149)
443 cd08561 GDPD_cytoplasmic_ScUgp 31.2 97 0.0021 29.5 5.2 48 362-430 202-249 (249)
444 cd04722 TIM_phosphate_binding 31.2 88 0.0019 26.9 4.6 37 339-382 81-123 (200)
445 PRK13305 sgbH 3-keto-L-gulonat 31.0 1.7E+02 0.0037 28.5 6.9 32 188-221 34-65 (218)
446 PLN02361 alpha-amylase 31.0 1.9E+02 0.0042 30.7 7.8 60 157-223 29-100 (401)
447 cd08565 GDPD_pAtGDE_like Glyce 30.8 98 0.0021 29.7 5.2 55 340-423 175-231 (235)
448 PRK05443 polyphosphate kinase; 30.7 1.5E+02 0.0032 33.9 7.2 160 243-422 244-430 (691)
449 PLN03096 glyceraldehyde-3-phos 30.7 40 0.00086 35.9 2.7 71 271-349 69-157 (395)
450 cd03313 enolase Enolase: Enola 30.6 2.1E+02 0.0046 30.1 8.0 130 271-422 214-364 (408)
451 PRK08005 epimerase; Validated 30.5 3.7E+02 0.008 26.2 9.1 77 323-420 10-87 (210)
452 cd07945 DRE_TIM_CMS Leptospira 30.4 90 0.002 31.2 5.1 91 160-270 77-171 (280)
453 COG0035 Upp Uracil phosphoribo 30.4 1.4E+02 0.003 29.5 6.2 49 158-224 139-188 (210)
454 PF13653 GDPD_2: Glycerophosph 30.3 42 0.00092 23.6 2.0 19 404-422 10-28 (30)
455 PRK00912 ribonuclease P protei 30.2 4.3E+02 0.0094 25.2 9.4 97 318-424 58-177 (237)
456 TIGR01890 N-Ac-Glu-synth amino 30.1 1.5E+02 0.0032 31.0 6.8 103 160-294 150-258 (429)
457 cd01941 YeiC_kinase_like YeiC- 30.1 4.2E+02 0.009 24.9 9.2 73 212-286 1-77 (288)
458 PRK08185 hypothetical protein; 30.1 1.5E+02 0.0032 30.2 6.5 108 160-294 81-205 (283)
459 PRK13305 sgbH 3-keto-L-gulonat 30.0 84 0.0018 30.6 4.6 48 323-378 10-61 (218)
460 cd02933 OYE_like_FMN Old yello 30.0 1.5E+02 0.0033 30.3 6.7 50 329-378 241-290 (338)
461 PRK00694 4-hydroxy-3-methylbut 29.9 55 0.0012 36.8 3.7 50 239-293 42-94 (606)
462 PRK05286 dihydroorotate dehydr 29.8 98 0.0021 31.6 5.3 41 361-420 275-317 (344)
463 PF01076 Mob_Pre: Plasmid reco 29.8 64 0.0014 30.4 3.7 39 196-234 101-140 (196)
464 PRK06781 amidophosphoribosyltr 29.7 71 0.0015 34.5 4.5 97 257-386 346-456 (471)
465 cd04747 OYE_like_5_FMN Old yel 29.6 3.4E+02 0.0074 28.4 9.2 99 159-267 146-256 (361)
466 cd02810 DHOD_DHPD_FMN Dihydroo 29.5 3.2E+02 0.0069 26.5 8.5 87 158-268 112-198 (289)
467 PRK05269 transaldolase B; Prov 29.3 1.1E+02 0.0024 31.6 5.6 22 244-265 156-177 (318)
468 COG0036 Rpe Pentose-5-phosphat 29.3 4.8E+02 0.01 26.0 9.7 89 323-432 13-107 (220)
469 PRK09310 aroDE bifunctional 3- 29.2 2E+02 0.0044 30.8 7.7 89 325-423 8-112 (477)
470 PRK11517 transcriptional regul 29.1 2.6E+02 0.0056 24.6 7.2 65 327-398 32-96 (223)
471 TIGR00874 talAB transaldolase. 29.1 73 0.0016 33.0 4.3 23 243-265 153-175 (317)
472 TIGR00289 conserved hypothetic 29.1 1.1E+02 0.0024 29.9 5.3 45 362-420 47-91 (222)
473 PRK05848 nicotinate-nucleotide 29.0 90 0.002 31.5 4.8 131 241-423 127-259 (273)
474 cd06359 PBP1_Nba_like Type I p 28.9 1.8E+02 0.0039 28.2 6.7 104 278-392 127-233 (333)
475 cd00952 CHBPH_aldolase Trans-o 28.8 3.5E+02 0.0075 27.3 8.9 112 152-295 25-143 (309)
476 TIGR00035 asp_race aspartate r 28.8 1.9E+02 0.0041 27.5 6.8 47 373-419 34-80 (229)
477 COG0167 PyrD Dihydroorotate de 28.8 6.8E+02 0.015 26.0 12.2 118 131-288 162-300 (310)
478 PRK10529 DNA-binding transcrip 28.8 4.1E+02 0.0089 23.5 9.0 66 326-398 32-97 (225)
479 cd06314 PBP1_tmGBP Periplasmic 28.6 4.7E+02 0.01 24.1 10.1 103 159-285 44-151 (271)
480 PLN02417 dihydrodipicolinate s 28.6 1.1E+02 0.0024 30.2 5.3 107 234-383 14-135 (280)
481 COG1794 RacX Aspartate racemas 28.5 85 0.0018 31.5 4.4 61 242-302 58-134 (230)
482 cd07944 DRE_TIM_HOA_like 4-hyd 28.5 1.3E+02 0.0028 29.7 5.7 21 252-272 201-221 (266)
483 cd00953 KDG_aldolase KDG (2-ke 28.4 87 0.0019 30.9 4.5 47 326-381 75-129 (279)
484 PLN02389 biotin synthase 28.3 1.5E+02 0.0033 31.1 6.4 77 319-418 112-192 (379)
485 TIGR01302 IMP_dehydrog inosine 28.3 1.4E+02 0.0031 31.6 6.4 62 330-418 224-290 (450)
486 PRK08195 4-hyroxy-2-oxovalerat 28.3 1.9E+02 0.0042 29.7 7.1 81 152-266 140-221 (337)
487 cd00537 MTHFR Methylenetetrahy 28.2 5.7E+02 0.012 24.9 12.8 114 158-290 74-191 (274)
488 PRK12858 tagatose 1,6-diphosph 28.1 2.3E+02 0.005 29.5 7.7 138 256-432 116-301 (340)
489 PRK14332 (dimethylallyl)adenos 28.1 3.6E+02 0.0078 28.8 9.3 46 133-179 158-208 (449)
490 PLN02925 4-hydroxy-3-methylbut 28.1 63 0.0014 37.1 3.8 45 247-292 111-158 (733)
491 TIGR00735 hisF imidazoleglycer 28.0 1.4E+02 0.0029 29.0 5.7 169 158-379 31-205 (254)
492 PF09370 TIM-br_sig_trns: TIM- 27.9 51 0.0011 33.6 2.9 109 303-422 45-178 (268)
493 PRK09432 metF 5,10-methylenete 27.9 6.5E+02 0.014 25.5 11.5 105 158-285 98-203 (296)
494 PF04309 G3P_antiterm: Glycero 27.4 30 0.00066 32.9 1.1 54 341-421 116-169 (175)
495 smart00518 AP2Ec AP endonuclea 27.4 3.3E+02 0.0072 25.9 8.2 95 153-264 6-102 (273)
496 TIGR01928 menC_lowGC/arch o-su 27.4 6.5E+02 0.014 25.3 10.5 118 157-291 134-278 (324)
497 cd06341 PBP1_ABC_ligand_bindin 27.3 2.7E+02 0.0059 26.8 7.6 96 275-379 122-220 (341)
498 cd08573 GDPD_GDE1 Glycerophosp 27.3 1E+02 0.0023 29.9 4.8 53 340-421 203-256 (258)
499 PRK10550 tRNA-dihydrouridine s 27.3 2.2E+02 0.0049 28.9 7.3 37 340-378 159-199 (312)
500 TIGR01091 upp uracil phosphori 27.2 1.7E+02 0.0038 27.7 6.2 49 158-224 137-185 (207)
No 1
>COG0113 HemB Delta-aminolevulinic acid dehydratase [Coenzyme metabolism]
Probab=100.00 E-value=6.9e-155 Score=1131.68 Aligned_cols=325 Identities=55% Similarity=0.906 Sum_probs=317.8
Q ss_pred CCCCCCCCCCCCChHHHhhhhcCCCCCCCceeeEEEeeCCC-CcccCCCCCceeechhhhHHHHHHHHHHcCCCeEEEee
Q 013861 100 LPLSRRPRRNRKSPAMRASFQETNLSPANFVYPLFIHEGEE-DTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFP 178 (435)
Q Consensus 100 l~~~~R~RRlR~~~~~R~l~~Et~L~~~~LI~PlFV~eg~~-~~~I~sMPGv~r~s~~~~l~~~v~~~~~~GI~sv~LFg 178 (435)
+.+.+|+||+|+|+++|+|++||+|+++||||||||.||++ ++||+|||||||||++ .|++++++++++||++|+|||
T Consensus 4 ~~~~~R~RRlRk~~~~R~lv~Et~L~~~dLI~PiFV~eg~~~~~~I~SMPgv~r~s~d-~l~~~~~~~~~lGi~av~LFg 82 (330)
T COG0113 4 TFPFRRPRRLRKSPALRRLVRETRLTPNDLIYPIFVVEGENIKEEIPSMPGVYRYSLD-RLVEEAEELVDLGIPAVILFG 82 (330)
T ss_pred cchhhhhhhccCCHHHHHHHHhcCCCHHHeeEeEEEecCCCCccccCCCCCceeccHH-HHHHHHHHHHhcCCCEEEEeC
Confidence 34578999999999999999999999999999999999986 7899999999999997 699999999999999999999
Q ss_pred cCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHc
Q 013861 179 KVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARA 258 (435)
Q Consensus 179 vi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTshGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~A 258 (435)
+++++.||++||+|||+||+||||+|.||+.||||+|||||||||||+||||||++++|+|+||+||++|+||||+||+|
T Consensus 83 vp~~~~Kd~~gs~A~~~~givqravr~ik~~~p~l~iitDvcLceyT~HGHcGil~~~~~V~ND~Tle~l~k~Avs~AeA 162 (330)
T COG0113 83 VPDDSKKDETGSEAYDPDGIVQRAVRAIKEAFPELVVITDVCLCEYTDHGHCGILDDGGYVDNDETLEILAKQAVSQAEA 162 (330)
T ss_pred CCcccccCcccccccCCCChHHHHHHHHHHhCCCeEEEeeecccCCcCCCccccccCCCeecchHHHHHHHHHHHHHHHc
Confidence 86567899999999999999999999999999999999999999999999999998777999999999999999999999
Q ss_pred CCCeecCCCCCCchHHHHHHHHHHCCCCCceeechhhhhcccccccchhhhcCCCCCCCccccCCCCCCHHHHHHHHHhc
Q 013861 259 GADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQAD 338 (435)
Q Consensus 259 GADiVAPSDMMDGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D 338 (435)
|||||||||||||||++||++||++||+||+|||||+||||+||||||||++|+|+|||||||||||+|++|||||+++|
T Consensus 163 GAdivAPSdMMDGrV~aIR~aLd~ag~~~v~IMsYsaKyASafYGPFRdAa~Sap~~gdrktYQmDpaN~~EAlrE~~lD 242 (330)
T COG0113 163 GADIVAPSDMMDGRVGAIREALDEAGFIDVPIMSYSAKYASAFYGPFRDAAGSAPKFGDRKTYQMDPANRREALREIELD 242 (330)
T ss_pred CCCeecccccccchHHHHHHHHHHcCCCcceeeehhHHHhhhccccHHHHhhcccccCCcceeccCCcCHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccEEecccCCCcccCCCchHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEe
Q 013861 339 ESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADII 418 (435)
Q Consensus 339 ~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G~ide~~~v~Esl~~ikRAGAd~I 418 (435)
++||||||| ||||++|||||+++|++|++|++||||||||||||||+++||||++++++|||++|||||||+|
T Consensus 243 ~~EGAD~lM-------VKPal~YLDIi~~vk~~~~lP~~AYqVSGEYaMikAAa~nGwide~~~vlEsL~~~kRAGAd~I 315 (330)
T COG0113 243 IEEGADILM-------VKPALPYLDIIRRVKEEFNLPVAAYQVSGEYAMIKAAAQNGWIDEEKVVLESLTSIKRAGADLI 315 (330)
T ss_pred HhcCCcEEE-------EcCCchHHHHHHHHHHhcCCCeEEEecchHHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCEE
Confidence 999999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ehhcHHHHHHHHhc
Q 013861 419 LTYFALQAARCLCG 432 (435)
Q Consensus 419 iTYfA~~~a~~L~~ 432 (435)
|||||+|+|+||++
T Consensus 316 iTYfA~e~a~~L~~ 329 (330)
T COG0113 316 ITYFAKEVAEWLKE 329 (330)
T ss_pred EeecHHHHHHHhhc
Confidence 99999999999975
No 2
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=100.00 E-value=4.8e-154 Score=1130.43 Aligned_cols=319 Identities=61% Similarity=0.990 Sum_probs=313.3
Q ss_pred CCCCCCCCChHHHhhhhcCCCCCCCceeeEEEeeCCC-CcccCCCCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCC
Q 013861 104 RRPRRNRKSPAMRASFQETNLSPANFVYPLFIHEGEE-DTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPD 182 (435)
Q Consensus 104 ~R~RRlR~~~~~R~l~~Et~L~~~~LI~PlFV~eg~~-~~~I~sMPGv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~ 182 (435)
+||||||+|+++|+|++||+|+++||||||||+||.+ ++||+|||||||||++ .+++++++++++||++|+|||++|+
T Consensus 1 ~R~RRlR~~~~~R~lv~Et~l~~~dlI~PlFv~e~~~~~~~I~smPg~~r~s~d-~l~~~v~~~~~~Gi~~v~lFgv~~~ 79 (320)
T cd04823 1 TRPRRNRRTDALRRLVRETTLSPDDLILPLFVHEGENQREPIPSMPGVFRLSID-ELLKEAEEAVDLGIPAVALFPVTPP 79 (320)
T ss_pred CCCcccCCCHHHHHHHhcCCCCHHHceeeEEEecCCCCccccCCCCCceeeCHH-HHHHHHHHHHHcCCCEEEEecCCCc
Confidence 5999999999999999999999999999999999975 6899999999999997 6999999999999999999999888
Q ss_pred CCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCe
Q 013861 183 ALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADV 262 (435)
Q Consensus 183 ~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTshGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADi 262 (435)
++||+.||+|||+||++|||||.||++||||+|||||||||||+||||||++ +|.||||+||++|++|||+||+|||||
T Consensus 80 ~~KD~~gs~A~~~~g~v~~air~iK~~~p~l~vi~DVclc~YT~hGHcGil~-~~~idND~Tl~~L~~~Avs~A~AGADi 158 (320)
T cd04823 80 ELKSEDGSEAYNPDNLVCRAIRAIKEAFPELGIITDVALDPYTSHGHDGIVR-DGGILNDETVEVLCKQALVQAEAGADI 158 (320)
T ss_pred ccCCcccccccCCCChHHHHHHHHHHhCCCcEEEEeeeccCCCCCCcceecc-CCcCcCHHHHHHHHHHHHHHHHhCCCE
Confidence 8899999999999999999999999999999999999999999999999996 566999999999999999999999999
Q ss_pred ecCCCCCCchHHHHHHHHHHCCCCCceeechhhhhcccccccchhhhcCCCCCCCccccCCCCCCHHHHHHHHHhccccc
Q 013861 263 VSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEG 342 (435)
Q Consensus 263 VAPSDMMDGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EG 342 (435)
|||||||||||++||++||++||++|+|||||+||||+||||||||++|+|+|||||||||||+|++|||||+++|++||
T Consensus 159 VAPSdMMDGrV~aIR~aLd~~g~~~v~ImSYsaKyaS~fYGPFRdAa~Sap~fgDRksYQmdp~n~~eAlre~~~Di~EG 238 (320)
T cd04823 159 VAPSDMMDGRIGAIREALDAEGFTNVSILSYAAKYASAFYGPFRDALGSAPRKGDKKTYQMDPANSREALREVALDIAEG 238 (320)
T ss_pred EEcccchhhHHHHHHHHHHHCCCCCCceeechHHhhhhccchhHHHhcCCCCCCCccccCCCCCCHHHHHHHHHhhHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEecccCCCcccCCCchHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEeehhc
Q 013861 343 ADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTYF 422 (435)
Q Consensus 343 ADilM~~~~~~~VKPal~YLDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G~ide~~~v~Esl~~ikRAGAd~IiTYf 422 (435)
||||| ||||++|||||+++|++|++||+||||||||||||+|+++||+|++++++|+|++|||||||+|||||
T Consensus 239 AD~lM-------VKPal~YLDIi~~~k~~~~lPvaaYqVSGEYaMikaAa~~G~~d~~~~~~Esl~~ikRAGAd~IiTY~ 311 (320)
T cd04823 239 ADMVM-------VKPGMPYLDIIRRVKDEFGVPTFAYQVSGEYAMLKAAAQNGWLDEDKVMLESLLAFKRAGADGILTYF 311 (320)
T ss_pred CCEEE-------EcCCchHHHHHHHHHHhcCCCEEEEEccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhcCCCEEeecc
Confidence 99999 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 013861 423 ALQAARCLC 431 (435)
Q Consensus 423 A~~~a~~L~ 431 (435)
|+|+|+||+
T Consensus 312 A~~~a~wl~ 320 (320)
T cd04823 312 AKEAAEWLR 320 (320)
T ss_pred HHHHHHhhC
Confidence 999999994
No 3
>PF00490 ALAD: Delta-aminolevulinic acid dehydratase; InterPro: IPR001731 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents porphobilinogen (PBG) synthase (PBGS, or 5-aminoaevulinic acid dehydratase, or ALAD, 4.2.1.24 from EC), which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses a Knorr-type condensation reaction between two molecules of ALA to generate porphobilinogen, the pyrrolic building block used in later steps []. The structure of the enzyme is based on a TIM barrel topology made up of eight identical subunits, where each subunit binds to a metal ion that is essential for activity, usually zinc (in yeast, mammals and certain bacteria) or magnesium (in plants and other bacteria). A lysine has been implicated in the catalytic mechanism []. The lack of PBGS enzyme causes a rare porphyric disorder known as ALAD porphyria, which appears to involve conformational changes in the enzyme [.; GO: 0004655 porphobilinogen synthase activity, 0046872 metal ion binding, 0033014 tetrapyrrole biosynthetic process; PDB: 2C1H_A 1W1Z_A 1GZG_B 1W5O_B 1W5Q_B 2C18_A 1B4K_A 2C19_B 1W56_B 2C13_B ....
Probab=100.00 E-value=5.7e-154 Score=1132.09 Aligned_cols=320 Identities=59% Similarity=0.977 Sum_probs=295.4
Q ss_pred CCCCCCCCCChHHHhhhhcCCCCCCCceeeEEEeeCCC-CcccCCCCCceeechhhhHHHHHHHHHHcCCCeEEEeecCC
Q 013861 103 SRRPRRNRKSPAMRASFQETNLSPANFVYPLFIHEGEE-DTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVP 181 (435)
Q Consensus 103 ~~R~RRlR~~~~~R~l~~Et~L~~~~LI~PlFV~eg~~-~~~I~sMPGv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~ 181 (435)
.+|+||+|+|+++|+|++||+|+++||||||||+||++ ++||+|||||||||++ .+++++++++++||++|+|||+|+
T Consensus 3 ~~R~RRlR~~~~~R~lv~Et~l~~~dLI~PlFV~eg~~~~~~I~smPg~~r~sid-~l~~~v~~~~~~GI~~v~lFgvi~ 81 (324)
T PF00490_consen 3 NTRPRRLRKNPALRDLVRETRLSPSDLIYPLFVVEGENEKEPISSMPGVYRYSID-SLVKEVEEAVDLGIRAVILFGVID 81 (324)
T ss_dssp SS-GGGGSSSHHHHHHHCST-B-GGGEEEEEEEESSSSSEEEETTSTTEEEEEHH-HHHHHHHHHHHTT--EEEEEEE-S
T ss_pred CccCCCCCCCHHHHHHHhcCCCCHHHeEEEEEEecCCCcceeccCCCCeeeeCHH-HHHHHHHHHHHCCCCEEEEEeeCC
Confidence 58999999999999999999999999999999999997 6899999999999997 699999999999999999999999
Q ss_pred CCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceee-cCCCccccHHHHHHHHHHHHHHHHcCC
Q 013861 182 DALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIV-REDGVIMNDETVHQLCKQAVSQARAGA 260 (435)
Q Consensus 182 ~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTshGHcGIv-~e~g~IdND~Tv~~Lak~Avs~A~AGA 260 (435)
++.||+.||+|||+||++|||||.||++||||+|||||||||||+||||||+ +++|+||||+||++|+||||+||+|||
T Consensus 82 ~~~Kd~~gs~a~~~~g~v~~air~iK~~~pdl~vi~Dvclc~YT~hGHcGil~~~~g~idND~Tl~~Lak~Al~~A~AGA 161 (324)
T PF00490_consen 82 PSKKDEEGSEAYNPDGLVQRAIRAIKKAFPDLLVITDVCLCEYTSHGHCGILDDEDGEIDNDETLERLAKQALSHAEAGA 161 (324)
T ss_dssp CSC-BSS-GGGGSTTSHHHHHHHHHHHHSTTSEEEEEE-STTTBTSSSSSEB-CTTSSBEHHHHHHHHHHHHHHHHHHT-
T ss_pred cccCCcchhcccCCCChHHHHHHHHHHhCCCcEEEEecccccccCCCceEEEECCCCeEecHHHHHHHHHHHHHHHHhCC
Confidence 8999999999999999999999999999999999999999999999999999 589999999999999999999999999
Q ss_pred CeecCCCCCCchHHHHHHHHHHCCCCCceeechhhhhcccccccchhhhcCCCCCCCccccCCCCCCHHHHHHHHHhccc
Q 013861 261 DVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADES 340 (435)
Q Consensus 261 DiVAPSDMMDGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~ 340 (435)
|||||||||||||++||++||++||++|+|||||+||||+||||||||++|+|+|||||||||||+|++|||||+++|++
T Consensus 162 DiVAPSdMMDGrV~aIR~aLd~~g~~~v~ImSYsaKyaS~fYGPFRdAa~Sap~fgDrktYQmdp~N~~EAlre~~~D~~ 241 (324)
T PF00490_consen 162 DIVAPSDMMDGRVGAIREALDEAGFSDVPIMSYSAKYASAFYGPFRDAAGSAPKFGDRKTYQMDPANRREALREAELDIE 241 (324)
T ss_dssp SEEEE-S--TTHHHHHHHHHHHTTCTTSEEEEEEEEB-SSTGHHHHHHHT-HHSSSTSTTTSB-TT-HHHHHHHHHHHHH
T ss_pred CeeccccccCCHHHHHHHHHHhCCCCCccEEechHHHhhhhhHhHHHHhcCCccccCcccccCCCccHHHHHHHhhhhHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccEEecccCCCcccCCCchHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEeeh
Q 013861 341 EGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILT 420 (435)
Q Consensus 341 EGADilM~~~~~~~VKPal~YLDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G~ide~~~v~Esl~~ikRAGAd~IiT 420 (435)
||||||| ||||++|||||+++|++|++||+||||||||||||+|+++||+|++++++|+|++|||||||+|||
T Consensus 242 EGAD~lM-------VKPal~YLDIi~~~k~~~~~P~~aYqVSGEYaMikaAa~~G~~d~~~~~~Esl~~~kRAGAd~IiT 314 (324)
T PF00490_consen 242 EGADILM-------VKPALPYLDIIRRVKERFDLPVAAYQVSGEYAMIKAAAQNGWIDEKRVVLESLLSIKRAGADIIIT 314 (324)
T ss_dssp TT-SEEE-------EESSGGGHHHHHHHHHHCTS-EEEEETHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHT-SEEEE
T ss_pred hCCCEEE-------eecchhHHHHHHHHHHhcCCCEEEEEehHHHHHHHHHHHCCCcchhhHHHHHHHHHHHcCCCEEEe
Confidence 9999999 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcHHHHHHHH
Q 013861 421 YFALQAARCL 430 (435)
Q Consensus 421 YfA~~~a~~L 430 (435)
|||+|+|+||
T Consensus 315 YfA~~~a~~L 324 (324)
T PF00490_consen 315 YFAKEAAKWL 324 (324)
T ss_dssp TTHHHHHHHT
T ss_pred ecHHHHHhhC
Confidence 9999999998
No 4
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=100.00 E-value=2.5e-152 Score=1120.07 Aligned_cols=320 Identities=58% Similarity=0.923 Sum_probs=313.6
Q ss_pred CCCCCCCCCCCChHHHhhhhcCCCCCCCceeeEEEeeCCC-CcccCCCCCceeechhhhHHHHHHHHHHcCCCeEEEeec
Q 013861 101 PLSRRPRRNRKSPAMRASFQETNLSPANFVYPLFIHEGEE-DTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPK 179 (435)
Q Consensus 101 ~~~~R~RRlR~~~~~R~l~~Et~L~~~~LI~PlFV~eg~~-~~~I~sMPGv~r~s~~~~l~~~v~~~~~~GI~sv~LFgv 179 (435)
.+.+|+||||+|+++|+|++||+|+++||||||||+||++ ++||+|||||||||++ ++++++++++++||++|+|||+
T Consensus 3 ~~~~R~RRlR~~~~~R~lv~Et~l~~~dlI~PiFV~eg~~~~~~I~smPg~~r~s~d-~l~~~v~~~~~~Gi~av~LFgv 81 (323)
T PRK09283 3 FPFTRPRRLRKTAALRRLVRETRLTPNDLIYPLFVVEGENEREEIPSMPGVYRLSID-LLVKEAEEAVELGIPAVALFGV 81 (323)
T ss_pred CcCcCCcccCCCHHHHHHHhcCCCCHHHceeeEEEecCCCCccccCCCCCceeeCHH-HHHHHHHHHHHCCCCEEEEeCc
Confidence 3568999999999999999999999999999999999986 7899999999999997 6999999999999999999997
Q ss_pred CCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcC
Q 013861 180 VPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAG 259 (435)
Q Consensus 180 i~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTshGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AG 259 (435)
| +.||+.||+|||+||++|||||.||++|||++|||||||||||+||||||+++ |+|+||+||++|++|||+||+||
T Consensus 82 -~-~~Kd~~gs~A~~~~g~v~rair~iK~~~p~l~vi~DVcLc~YT~hGHcGil~~-g~idND~Tl~~L~~~Al~~A~AG 158 (323)
T PRK09283 82 -P-ELKDEDGSEAYNPDGLVQRAIRAIKKAFPELGVITDVCLDEYTSHGHCGILED-GYVDNDETLELLAKQALSQAEAG 158 (323)
T ss_pred -C-CCCCcccccccCCCCHHHHHHHHHHHhCCCcEEEEeeeccCCCCCCceecccC-CcCcCHHHHHHHHHHHHHHHHhC
Confidence 6 57999999999999999999999999999999999999999999999999974 99999999999999999999999
Q ss_pred CCeecCCCCCCchHHHHHHHHHHCCCCCceeechhhhhcccccccchhhhcCCCCCCCccccCCCCCCHHHHHHHHHhcc
Q 013861 260 ADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADE 339 (435)
Q Consensus 260 ADiVAPSDMMDGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~ 339 (435)
||||||||||||||++||++||++||++|+|||||+||||+||||||||++|+|+|||||||||||+|++|||||+++|+
T Consensus 159 aDiVAPSdMMDGrV~aIR~aLd~~g~~~v~ImSYsaKyaS~fYGPFRdA~~Sap~~gDrktYQmdp~n~~eAlre~~~D~ 238 (323)
T PRK09283 159 ADIVAPSDMMDGRVGAIREALDEAGFTDVPIMSYSAKYASAFYGPFRDAAGSAPQFGDRKTYQMDPANRREALREVALDI 238 (323)
T ss_pred CCEEEcccccccHHHHHHHHHHHCCCCCCceeecHHHHHHhhhHHHHHHHhcCCCCCCccccCCCCCCHHHHHHHHHhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccEEecccCCCcccCCCchHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEee
Q 013861 340 SEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIIL 419 (435)
Q Consensus 340 ~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G~ide~~~v~Esl~~ikRAGAd~Ii 419 (435)
+||||||| ||||++|||||+++|++|++||+||||||||||||+|+++||+|++++++|+|++|||||||+||
T Consensus 239 ~EGAD~lM-------VKPal~YLDIi~~~k~~~~~PvaaYqVSGEYaMikaAa~~G~~D~~~~~~Esl~~~kRAGAd~Ii 311 (323)
T PRK09283 239 EEGADMVM-------VKPALPYLDIIRRVKDEFNLPVAAYQVSGEYAMIKAAAQNGWIDEERVVLESLLSIKRAGADGIL 311 (323)
T ss_pred HhCCCEEE-------EcCCchHHHHHHHHHhcCCCCEEEEEccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcHHHHHHHHh
Q 013861 420 TYFALQAARCLC 431 (435)
Q Consensus 420 TYfA~~~a~~L~ 431 (435)
||||+|+|+||+
T Consensus 312 TYfA~~~a~~L~ 323 (323)
T PRK09283 312 TYFAKDAARWLR 323 (323)
T ss_pred ecCHHHHHHhhC
Confidence 999999999995
No 5
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=100.00 E-value=6.3e-152 Score=1113.23 Aligned_cols=313 Identities=57% Similarity=0.925 Sum_probs=307.9
Q ss_pred CCCCCChHHHhhhhcCCCCCCCceeeEEEeeCCC-CcccCCCCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCC
Q 013861 107 RRNRKSPAMRASFQETNLSPANFVYPLFIHEGEE-DTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALK 185 (435)
Q Consensus 107 RRlR~~~~~R~l~~Et~L~~~~LI~PlFV~eg~~-~~~I~sMPGv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~K 185 (435)
||||+|+++|+|++||+|+++||||||||+||++ ++||+|||||||||++ .+++++++++++||++|+|||+ | +.|
T Consensus 1 RRlR~~~~~R~lv~Et~L~~~dLI~PlFV~eg~~~~~~I~sMPG~~r~s~d-~l~~~~~~~~~~Gi~~v~LFgv-~-~~K 77 (314)
T cd00384 1 RRLRRSPALRDLVRETRLSPDDLIYPLFVVEGIDEKEEISSMPGVYRLSVD-SLVEEAEELADLGIRAVILFGI-P-EHK 77 (314)
T ss_pred CCCCCChHHHHHHHcCCCCHHHceeeEEEecCCCCccccCCCCCceeeCHH-HHHHHHHHHHHCCCCEEEEECC-C-CCC
Confidence 8999999999999999999999999999999975 6899999999999997 6999999999999999999996 6 469
Q ss_pred CcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecC
Q 013861 186 SPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSP 265 (435)
Q Consensus 186 d~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTshGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAP 265 (435)
|+.||+|||+||++|||||.||++||||+|||||||||||+||||||++ +|+||||+||++|++|||+||+||||||||
T Consensus 78 d~~gs~A~~~~g~v~~air~iK~~~p~l~vi~DvcLc~YT~hGHcGil~-~~~idND~Tl~~L~k~Als~A~AGADiVAP 156 (314)
T cd00384 78 DEIGSEAYDPDGIVQRAIRAIKEAVPELVVITDVCLCEYTDHGHCGILK-DDYVDNDATLELLAKIAVSHAEAGADIVAP 156 (314)
T ss_pred CCCcccccCCCChHHHHHHHHHHhCCCcEEEEeeeccCCCCCCcceecc-CCcCccHHHHHHHHHHHHHHHHcCCCeeec
Confidence 9999999999999999999999999999999999999999999999996 689999999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHHHCCCCCceeechhhhhcccccccchhhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccE
Q 013861 266 SDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADI 345 (435)
Q Consensus 266 SDMMDGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADi 345 (435)
||||||||++||++||++||+||+|||||+||||+||||||||++|+|+|||||||||||+|++|||||+++|++|||||
T Consensus 157 SdMMDGrV~aIR~aLd~~g~~~v~ImsYsaKyaSafYGPFRdAa~Sap~~gDRktYQmdpan~~eAlre~~~D~~EGAD~ 236 (314)
T cd00384 157 SDMMDGRVAAIREALDEAGFSDVPIMSYSAKYASAFYGPFRDAADSAPSFGDRKTYQMDPANRREALREVELDIEEGADI 236 (314)
T ss_pred ccccccHHHHHHHHHHHCCCCCCceeecHHHhhhhccchHHHHhhcCCCCCCccccCCCCCCHHHHHHHHHhhHHhCCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecccCCCcccCCCchHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEeehhcHHH
Q 013861 346 LLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTYFALQ 425 (435)
Q Consensus 346 lM~~~~~~~VKPal~YLDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G~ide~~~v~Esl~~ikRAGAd~IiTYfA~~ 425 (435)
|| ||||++|||||+++|++|++||+||||||||||||+|+++||+|++++++|+|++|||||||+||||||+|
T Consensus 237 lM-------VKPal~YLDIi~~~k~~~~~PvaaYqVSGEYaMikaAa~~G~id~~~~~~Esl~~~kRAGAd~IiTYfA~~ 309 (314)
T cd00384 237 LM-------VKPALAYLDIIRDVRERFDLPVAAYNVSGEYAMIKAAAKNGWIDEERVVLESLTSIKRAGADLIITYFAKD 309 (314)
T ss_pred EE-------EcCCchHHHHHHHHHHhcCCCEEEEEccHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCCEEEeecHHH
Confidence 99 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHH
Q 013861 426 AARCL 430 (435)
Q Consensus 426 ~a~~L 430 (435)
+|+||
T Consensus 310 ~a~~l 314 (314)
T cd00384 310 AARWL 314 (314)
T ss_pred HHhhC
Confidence 99997
No 6
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=100.00 E-value=1.9e-151 Score=1111.94 Aligned_cols=315 Identities=46% Similarity=0.769 Sum_probs=309.1
Q ss_pred CCCCCCCCCChHHHhhhhcCCCCCCCceeeEEEeeCCC-CcccCCCCCceeechhhhHHHHHHHHHHcCCCeEEEeecCC
Q 013861 103 SRRPRRNRKSPAMRASFQETNLSPANFVYPLFIHEGEE-DTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVP 181 (435)
Q Consensus 103 ~~R~RRlR~~~~~R~l~~Et~L~~~~LI~PlFV~eg~~-~~~I~sMPGv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~ 181 (435)
.+||||||+++++|+|++||+|+++||||||||+||++ ++||+|||||||||++ .+++++++++++||++|+|||+ |
T Consensus 7 ~~R~RRlR~~~~~R~lv~Et~l~~~dLI~PlFV~eg~~~~~~I~smPg~~r~sid-~l~~~~~~~~~~Gi~~v~lFgv-~ 84 (322)
T PRK13384 7 LRRLRRLRRSEAMRDLVRETEVSLSDLIYPIFIEEHITDAVPISTLPGISRLPES-ALADEIERLYALGIRYVMPFGI-S 84 (322)
T ss_pred CcCCCcCCCCHHHHHHHhcCCCCHHHceeeEEEecCCCCceecCCCCCcceECHH-HHHHHHHHHHHcCCCEEEEeCC-C
Confidence 37999999999999999999999999999999999986 6899999999999997 6999999999999999999996 6
Q ss_pred CCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCC
Q 013861 182 DALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGAD 261 (435)
Q Consensus 182 ~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTshGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGAD 261 (435)
+ .||+.||+|||+||++|||||.||++||||+|||||||||||+||||||++ +|.|+||+||++|++|||+||+||||
T Consensus 85 ~-~Kd~~gs~A~~~~g~v~~air~iK~~~pdl~vi~DVcLc~YT~hGHcGil~-~g~i~ND~Tl~~L~~~Als~A~AGAD 162 (322)
T PRK13384 85 H-HKDAKGSDTWDDNGLLARMVRTIKAAVPEMMVIPDICFCEYTDHGHCGVLH-NDEVDNDATVENLVKQSVTAAKAGAD 162 (322)
T ss_pred C-CCCCCcccccCCCChHHHHHHHHHHHCCCeEEEeeeecccCCCCCceeecc-CCcCccHHHHHHHHHHHHHHHHcCCC
Confidence 4 699999999999999999999999999999999999999999999999996 58999999999999999999999999
Q ss_pred eecCCCCCCchHHHHHHHHHHCCCCCceeechhhhhcccccccchhhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccc
Q 013861 262 VVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESE 341 (435)
Q Consensus 262 iVAPSDMMDGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~E 341 (435)
||||||||||||++||++||++||+||+|||||+||||+||||||||++|+|+ ||||||||||+|++|||||+++|++|
T Consensus 163 iVAPSdMMDGrV~aIR~aLd~~g~~~v~ImSYsaKyaS~fYGPFRdAa~Sap~-gDrksYQmdp~n~~eAlre~~~D~~E 241 (322)
T PRK13384 163 MLAPSAMMDGQVKAIRQGLDAAGFEHVAILAHSAKFASSFYGPFRAAVDCELS-GDRKSYQLDYANGRQALLEALLDEAE 241 (322)
T ss_pred eEecccccccHHHHHHHHHHHCCCCCCceeehhHhhhhhhcchHHHHhcCCCC-CCcccccCCCCCHHHHHHHHHhhHhh
Confidence 99999999999999999999999999999999999999999999999999997 99999999999999999999999999
Q ss_pred cccEEecccCCCcccCCCchHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEeehh
Q 013861 342 GADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTY 421 (435)
Q Consensus 342 GADilM~~~~~~~VKPal~YLDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G~ide~~~v~Esl~~ikRAGAd~IiTY 421 (435)
|||||| ||||++|||||+++|+++++||+||||||||||||+|+++||+|++++++|+|++|||||||+||||
T Consensus 242 GAD~lM-------VKPal~YLDIi~~~k~~~~lPvaaYqVSGEYaMikaAa~~G~~d~~~~~~Esl~~~kRAGAd~IiTY 314 (322)
T PRK13384 242 GADILM-------VKPGTPYLDVLSRLRQETHLPLAAYQVGGEYAMIKFAALAGALDERAVVTETLGGLKRAGADLIVSY 314 (322)
T ss_pred CCCEEE-------EcCCchHHHHHHHHHhccCCCEEEEEchHHHHHHHHHHHcCCccHHHHHHHHHHHHHHcCCCEEeeh
Confidence 999999 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHH
Q 013861 422 FALQAARC 429 (435)
Q Consensus 422 fA~~~a~~ 429 (435)
||+|+|+|
T Consensus 315 fA~~~a~w 322 (322)
T PRK13384 315 YAKQYAQW 322 (322)
T ss_pred hHHHHhhC
Confidence 99999998
No 7
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=100.00 E-value=1.9e-149 Score=1097.10 Aligned_cols=312 Identities=43% Similarity=0.732 Sum_probs=305.2
Q ss_pred CChHHHhhhhcCCCCCCCceeeEEEeeCCC-CcccCCCCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcc-
Q 013861 111 KSPAMRASFQETNLSPANFVYPLFIHEGEE-DTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPT- 188 (435)
Q Consensus 111 ~~~~~R~l~~Et~L~~~~LI~PlFV~eg~~-~~~I~sMPGv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~- 188 (435)
.|+++|+|++||+|+++||||||||+||++ ++||+|||||||||++ .+++++++++++||++|+|||+.+++.||+.
T Consensus 5 ~~~~~R~lv~Et~L~~~dlI~PlFV~eg~~~~~~I~smPG~~r~s~d-~l~~~~~~~~~~Gi~~v~LFgv~~~~~Kd~~~ 83 (320)
T cd04824 5 AHPLLRQWQSERTLTKSNLIYPIFITDNPDAKQPIDSLPGINRYGVN-RLEEFLRPLVAKGLRSVILFGVPLKPGKDDRS 83 (320)
T ss_pred CCHHHHHHHhcCCCCHHHceeeEEEecCCCCccccCCCCCceeeCHH-HHHHHHHHHHHCCCCEEEEeCCCccccCCcCc
Confidence 589999999999999999999999999986 6899999999999997 6999999999999999999997333469999
Q ss_pred cCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCC
Q 013861 189 GDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDM 268 (435)
Q Consensus 189 Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTshGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDM 268 (435)
||+|||+||++|||||.||++||||+|||||||||||+||||||++++|+||||+||++|+||||+||+|||||||||||
T Consensus 84 gs~a~~~~g~v~~air~iK~~~pdl~vi~Dvclc~YT~hGHcGil~~~g~vdND~Tl~~L~k~Avs~A~AGADiVAPSdM 163 (320)
T cd04824 84 GSAADDEDGPVIQAIKLIREEFPELLIACDVCLCEYTSHGHCGILYEDGTINNEASVKRLAEVALAYAKAGAHIVAPSDM 163 (320)
T ss_pred cccccCCCChHHHHHHHHHHhCCCcEEEEeeeccCCCCCCcceeECCCCcCcCHHHHHHHHHHHHHHHHhCCCEEecccc
Confidence 99999999999999999999999999999999999999999999977899999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHCCC-CCceeechhhhhcccccccchhhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEe
Q 013861 269 MDGRVGAIRAALDAEGF-QHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILL 347 (435)
Q Consensus 269 MDGrVgAIR~aLD~~Gf-~~v~IMSYSaKyASafYGPFRdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM 347 (435)
|||||++||++||++|| ++|+|||||+||||+||||||||++|+|+|||||||||||+|++|||||+++|++|||||||
T Consensus 164 MDGrV~aIR~aLD~~G~~~~v~ImSYsaKyaS~fYGPFRdAa~Sap~~gDRksYQmdp~n~~eAlre~~~D~~EGAD~lM 243 (320)
T cd04824 164 MDGRVRAIKQALIQAGLGNKVSVMSYSAKFASCLYGPFRDAACSAPSFGDRRCYQLPPGARGLALRAVERDVSEGADMIM 243 (320)
T ss_pred cccHHHHHHHHHHHCCCccCCeeeehHHHhhhhccchHHHHhcCCCCCCCccccCCCCcCHHHHHHHHHhhHHhCCCEEE
Confidence 99999999999999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCcccCCCchHHHHHHHHhhC-CCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEeehhcHHHH
Q 013861 348 FSVLGSQVKPGLPYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTYFALQA 426 (435)
Q Consensus 348 ~~~~~~~VKPal~YLDIIr~vk~~~-~lPvaaYqVSGEYaMikaAa~~G~ide~~~v~Esl~~ikRAGAd~IiTYfA~~~ 426 (435)
||||++|||||+++|++| ++||+||||||||+|||+|+++||+|++++++|+|++|||||||+||||||+|+
T Consensus 244 -------VKPal~YLDIi~~~k~~~~~~PvaaYqVSGEYaMikaAa~~G~iDe~~~~~Esl~~ikRAGAd~IiTYfA~~~ 316 (320)
T cd04824 244 -------VKPGTPYLDIVREAKDKHPDLPLAVYHVSGEYAMLHAAAEAGAFDLKRAVLEAMTGFRRAGADIIITYFTPEL 316 (320)
T ss_pred -------EcCCchHHHHHHHHHHhccCCCEEEEEccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhcCCCEEEeecHHHH
Confidence 999999999999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH
Q 013861 427 ARCL 430 (435)
Q Consensus 427 a~~L 430 (435)
|+||
T Consensus 317 a~wL 320 (320)
T cd04824 317 LDWL 320 (320)
T ss_pred HhhC
Confidence 9997
No 8
>KOG2794 consensus Delta-aminolevulinic acid dehydratase [Coenzyme transport and metabolism]
Probab=100.00 E-value=5e-140 Score=1015.93 Aligned_cols=337 Identities=64% Similarity=0.977 Sum_probs=324.4
Q ss_pred CCCCCCCCCcccCCCCCCCCCCCCCChHHHhhhhcCCCCCCCceeeEEEeeCCCC-cccCCCCCceeechhhhHHHHHHH
Q 013861 87 KPAAPAGTPVVPSLPLSRRPRRNRKSPAMRASFQETNLSPANFVYPLFIHEGEED-TPIGAMPGCYRLGWRHGLVQEVAK 165 (435)
Q Consensus 87 ~~~~p~g~p~~~~l~~~~R~RRlR~~~~~R~l~~Et~L~~~~LI~PlFV~eg~~~-~~I~sMPGv~r~s~~~~l~~~v~~ 165 (435)
+|++|- +..|+++.+|++|.|.||.+|.|++||.|+|+||||||||+|++++ +||.||||+|||+|++ |++++++
T Consensus 2 ~~a~~l---~~~P~~~s~~l~~g~~~p~lR~~q~~~~is~~nliyPlFI~e~~dd~~pI~SmPg~~r~G~~r-L~e~l~p 77 (340)
T KOG2794|consen 2 KPATPL---IDQPLQLSRRLHRGYKHPLLRAWQQETNISPANLIYPLFIHEGEDDFTPIDSMPGIYRLGVNR-LKEELAP 77 (340)
T ss_pred CCCcch---hcCcccHHHHhhcCCCCHHHHHHhccCCCChhheeeeEEEecCcccccccccCCchhHHHHHH-HHHHHHH
Confidence 455555 7899999999999999999999999999999999999999999975 8999999999999986 9999999
Q ss_pred HHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCccccHHHH
Q 013861 166 ARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETV 245 (435)
Q Consensus 166 ~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTshGHcGIv~e~g~IdND~Tv 245 (435)
++++|++||+|||++++..||++||+|+|+||+|.++|+.||+.||||+|+|||||||||||||||++.|||.|+||+|+
T Consensus 78 lv~~Gl~sViLfgvv~~~~Kd~~gs~Ads~~gpvi~ai~~lr~~fPdL~i~cDVclc~YsshGHcGll~EdG~i~~~esv 157 (340)
T KOG2794|consen 78 LVAKGLRSVILFGVVPEALKDPTGSEADSDNGPVIRAIRLLRDRFPDLVIACDVCLCEYSSHGHCGLLGEDGVINNDESV 157 (340)
T ss_pred HHHhccceEEEecCCCccccCcccccccCCCCcHHHHHHHHHHhCcceEEEeeeeeccccCCCccceecccccccCHHHH
Confidence 99999999999999988999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCCCceeechhhhhcccccccchhhhcCCCCCCCccccCCCC
Q 013861 246 HQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNP 325 (435)
Q Consensus 246 ~~Lak~Avs~A~AGADiVAPSDMMDGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRdA~~Sap~fgDRktYQmdp 325 (435)
++|+++||+||+||||||||||||||||+|||++|+++||++|+||||||||+|+||||||||++|+|+|||||+|||++
T Consensus 158 ~rlaevAv~yAkAGa~vVapSDmmDgRV~aIk~aL~~~~l~~vsvmSYsaKfas~fyGpFR~aa~saP~fgDrkcYQlP~ 237 (340)
T KOG2794|consen 158 HRLAEVAVSYAKAGADVVAPSDMMDGRVGAIKQALDAEGLQKVSVMSYSAKFASSFYGPFREAACSAPKFGDRKCYQLPA 237 (340)
T ss_pred HHHHHHHHHHHhcCCceecchHhhcchHHHHHHHHHHhcccceEEEeehhhhhhccccchHHHhhcCcccCCcceeeCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999955
Q ss_pred CCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhCC-CCeEEEEechHHHHHHHHHHCCCCchhhHHH
Q 013861 326 ANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYP-LPIAAYQVSGEYSMIKAGGALKMIDEQRVMM 404 (435)
Q Consensus 326 ~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~~-lPvaaYqVSGEYaMikaAa~~G~ide~~~v~ 404 (435)
+.+..|+|..++|+.||||||| |||++|||||||.+|++++ ||+++|||||||||||||+++|++|+|++||
T Consensus 238 ~~R~la~rA~erD~aEGAD~lm-------VKPg~pyLDIir~~kd~~~dlpi~ayqVSGEyaMi~aaa~~g~~Dlk~~vm 310 (340)
T KOG2794|consen 238 NSRGLALRARERDVAEGADILM-------VKPGLPYLDIIRLLKDKTPDLPIAAYQVSGEYAMIKAAALAGMFDLKKVVM 310 (340)
T ss_pred chHHHHHHHHHhhhhccCceEE-------ecCCCcHHHHHHHHHhcCCCCceEEEEecchHHHHHHHHhcccccHHHHHH
Confidence 5555566666679999999999 9999999999999999996 9999999999999999999999999999999
Q ss_pred HHHHHHHHhcccEeehhcHHHHHHHHhccC
Q 013861 405 ESLMCLRRAGADIILTYFALQAARCLCGEK 434 (435)
Q Consensus 405 Esl~~ikRAGAd~IiTYfA~~~a~~L~~~~ 434 (435)
|+|++|+|||||+||||||+|+++||++++
T Consensus 311 Esm~~frRAGAdiIlTYfapq~l~~L~~e~ 340 (340)
T KOG2794|consen 311 ESMLGFRRAGADIILTYFAPQLLTWLCGEN 340 (340)
T ss_pred HHHHHHHhcCCcEEEeeccHHHHHHhhcCC
Confidence 999999999999999999999999999875
No 9
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=96.90 E-value=0.021 Score=52.30 Aligned_cols=164 Identities=18% Similarity=0.240 Sum_probs=99.8
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecc-cCCCCCCcceeecCC
Q 013861 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVAL-DPYSSDGHDGIVRED 236 (435)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcL-c~YTshGHcGIv~e~ 236 (435)
..++.++.+ +-|++.+-+ |+....+.| .+.|+.||+.+|+..+++|+-+ ++-+
T Consensus 13 ~a~~~~~~l-~~~v~~iev------------~~~l~~~~g--~~~i~~l~~~~~~~~i~~d~k~~d~~~----------- 66 (206)
T TIGR03128 13 EALELAEKV-ADYVDIIEI------------GTPLIKNEG--IEAVKEMKEAFPDRKVLADLKTMDAGE----------- 66 (206)
T ss_pred HHHHHHHHc-ccCeeEEEe------------CCHHHHHhC--HHHHHHHHHHCCCCEEEEEEeeccchH-----------
Confidence 466777766 777765444 222234445 4799999999999889999844 2221
Q ss_pred CccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCc-hHHHHHHHHHHCCCCCceeechhhhhcccccccchhhhcCCCCC
Q 013861 237 GVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDG-RVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRF 315 (435)
Q Consensus 237 g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMMDG-rVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRdA~~Sap~f 315 (435)
.++-..+++|||+|.-.-...+ .+..+-+...+.|. .+|. .+
T Consensus 67 -------------~~~~~~~~~Gad~i~vh~~~~~~~~~~~i~~~~~~g~---~~~~-------~~-------------- 109 (206)
T TIGR03128 67 -------------YEAEQAFAAGADIVTVLGVADDATIKGAVKAAKKHGK---EVQV-------DL-------------- 109 (206)
T ss_pred -------------HHHHHHHHcCCCEEEEeccCCHHHHHHHHHHHHHcCC---EEEE-------Ee--------------
Confidence 1444578999999964433333 45666666666663 3332 01
Q ss_pred CCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCC-------CchHHHHHHHHhhCCCCeEEEEechHHHHH
Q 013861 316 GDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPG-------LPYLDVIRLLRDKYPLPIAAYQVSGEYSMI 388 (435)
Q Consensus 316 gDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPa-------l~YLDIIr~vk~~~~lPvaaYqVSGEYaMi 388 (435)
++|....|.++++ .+.|+|+|. |-|+ ..+++-|+++++.++.+ -..|.
T Consensus 110 -------~~~~t~~~~~~~~---~~~g~d~v~-------~~pg~~~~~~~~~~~~~i~~l~~~~~~~--~i~v~------ 164 (206)
T TIGR03128 110 -------INVKDKVKRAKEL---KELGADYIG-------VHTGLDEQAKGQNPFEDLQTILKLVKEA--RVAVA------ 164 (206)
T ss_pred -------cCCCChHHHHHHH---HHcCCCEEE-------EcCCcCcccCCCCCHHHHHHHHHhcCCC--cEEEE------
Confidence 1233333334444 234999998 6554 25889999999877643 24443
Q ss_pred HHHHHCCCCchhhHHHHHHHHHHHhcccEeeh
Q 013861 389 KAGGALKMIDEQRVMMESLMCLRRAGADIILT 420 (435)
Q Consensus 389 kaAa~~G~ide~~~v~Esl~~ikRAGAd~IiT 420 (435)
|-++. |.+..+..+|||.++.
T Consensus 165 ------GGI~~-----~n~~~~~~~Ga~~v~v 185 (206)
T TIGR03128 165 ------GGINL-----DTIPDVIKLGPDIVIV 185 (206)
T ss_pred ------CCcCH-----HHHHHHHHcCCCEEEE
Confidence 33443 4455677899997764
No 10
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=96.77 E-value=0.066 Score=55.31 Aligned_cols=170 Identities=24% Similarity=0.286 Sum_probs=102.6
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCC
Q 013861 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDG 237 (435)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTshGHcGIv~e~g 237 (435)
+.++.++++.+.|+..+-+ |. | .....+ .++|+.|++.+++..|+.|+-+.-. |
T Consensus 17 ~~~~~~~~~~~~Gv~~ie~-g~-p----------~~~~~~--~~~i~~l~~~~~~~~ii~D~kl~d~------------g 70 (430)
T PRK07028 17 RAVEIAKEAVAGGADWIEA-GT-P----------LIKSEG--MNAIRTLRKNFPDHTIVADMKTMDT------------G 70 (430)
T ss_pred HHHHHHHHHHhcCCcEEEe-CC-H----------HHHHhh--HHHHHHHHHHCCCCEEEEEeeeccc------------h
Confidence 4788889999999988732 21 1 111112 6899999999998889999765311 2
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCeec-CCCCCCchHHHHHHHHHHCCCCCceeechhhhhcccccccchhhhcCCCCCC
Q 013861 238 VIMNDETVHQLCKQAVSQARAGADVVS-PSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFG 316 (435)
Q Consensus 238 ~IdND~Tv~~Lak~Avs~A~AGADiVA-PSDMMDGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRdA~~Sap~fg 316 (435)
.+ ..-..+++|||.|. |...-+..+..+++...+.|. .+.+-.
T Consensus 71 ~~-----------~v~~a~~aGAdgV~v~g~~~~~~~~~~i~~a~~~G~-~~~~g~------------------------ 114 (430)
T PRK07028 71 AI-----------EVEMAAKAGADIVCILGLADDSTIEDAVRAARKYGV-RLMADL------------------------ 114 (430)
T ss_pred HH-----------HHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHcCC-EEEEEe------------------------
Confidence 11 22235789999777 543223356666666667764 232200
Q ss_pred CccccCCCCCCHHHHHHHHHhcccccccEEecccCC-CcccCCCchHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCC
Q 013861 317 DKKTYQMNPANYREALVEAQADESEGADILLFSVLG-SQVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALK 395 (435)
Q Consensus 317 DRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~-~~VKPal~YLDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G 395 (435)
+.|.+..|.++++. +.|+|+|.+.... .|-++ ...++.++++++.+++||.+ .|
T Consensus 115 ------~s~~t~~e~~~~a~---~~GaD~I~~~pg~~~~~~~-~~~~~~l~~l~~~~~iPI~a---~G------------ 169 (430)
T PRK07028 115 ------INVPDPVKRAVELE---ELGVDYINVHVGIDQQMLG-KDPLELLKEVSEEVSIPIAV---AG------------ 169 (430)
T ss_pred ------cCCCCHHHHHHHHH---hcCCCEEEEEeccchhhcC-CChHHHHHHHHhhCCCcEEE---EC------------
Confidence 11212233344443 4699999833211 12222 34579999999988999976 23
Q ss_pred CCchhhHHHHHHHHHHHhcccEee
Q 013861 396 MIDEQRVMMESLMCLRRAGADIIL 419 (435)
Q Consensus 396 ~ide~~~v~Esl~~ikRAGAd~Ii 419 (435)
-++. |.+..+..+|||.|+
T Consensus 170 GI~~-----~n~~~~l~aGAdgv~ 188 (430)
T PRK07028 170 GLDA-----ETAAKAVAAGADIVI 188 (430)
T ss_pred CCCH-----HHHHHHHHcCCCEEE
Confidence 3443 445667788998765
No 11
>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R.rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate.
Probab=96.43 E-value=0.014 Score=60.15 Aligned_cols=103 Identities=27% Similarity=0.380 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHHHHHcCCCeecCCC--------CCCchHHHHHHHHHHCCCCCceeechhhhhcccccccchhhhcCCC
Q 013861 242 DETVHQLCKQAVSQARAGADVVSPSD--------MMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNP 313 (435)
Q Consensus 242 D~Tv~~Lak~Avs~A~AGADiVAPSD--------MMDGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRdA~~Sap 313 (435)
=-+.+.+++++-.++++|+|.|-... -++=||.++.+++++.. .
T Consensus 137 GL~~~~~a~~~~~~~~gGvD~IKdDe~l~~~~~~p~~eRv~~v~~av~~a~----------------------------~ 188 (364)
T cd08210 137 GLSAAELAELAYAFALGGIDIIKDDHGLADQPFAPFEERVKACQEAVAEAN----------------------------A 188 (364)
T ss_pred cCCHHHHHHHHHHHHhcCCCeeecCccccCccCCCHHHHHHHHHHHHHHHH----------------------------h
Confidence 45678889999999999999994332 23345555555555442 1
Q ss_pred CCCCccccCCCC-CCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhCC-CCeEEE
Q 013861 314 RFGDKKTYQMNP-ANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYP-LPIAAY 379 (435)
Q Consensus 314 ~fgDRktYQmdp-~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~~-lPvaaY 379 (435)
.-|.|+-|-.+. +...|+++.++.=.+.|||.|| |-|...++|.++.+++... +||.++
T Consensus 189 eTG~~~~y~~Nita~~~em~~ra~~a~~~Ga~~vM-------v~~~~~G~~~~~~l~~~~~~l~i~aH 249 (364)
T cd08210 189 ETGGRTLYAPNVTGPPTQLLERARFAKEAGAGGVL-------IAPGLTGLDTFRELAEDFDFLPILAH 249 (364)
T ss_pred hcCCcceEEEecCCCHHHHHHHHHHHHHcCCCEEE-------eecccchHHHHHHHHhcCCCcEEEEc
Confidence 126788888877 5567888888887889999999 9999999999999999988 999877
No 12
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=96.34 E-value=0.026 Score=54.55 Aligned_cols=120 Identities=20% Similarity=0.246 Sum_probs=83.7
Q ss_pred HHHHHHHHHcCCCeecCCCCC----------------C---chHHHHHHHHHHCCCCCceeechhhhhcccccccchhhh
Q 013861 249 CKQAVSQARAGADVVSPSDMM----------------D---GRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREAL 309 (435)
Q Consensus 249 ak~Avs~A~AGADiVAPSDMM----------------D---GrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRdA~ 309 (435)
.+.+-.+.++|++.|-..|-. + .+|.++|++.+.. .++.|++-+--|...
T Consensus 87 ~~~v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~--~~~~IiARTDa~~~~--------- 155 (243)
T cd00377 87 ARTVRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDL--PDFVIIARTDALLAG--------- 155 (243)
T ss_pred HHHHHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhcc--CCeEEEEEcCchhcc---------
Confidence 334455677999999885543 1 3455555555443 678888774433222
Q ss_pred cCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhCCCCeEEEEechHHHHHH
Q 013861 310 DSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIK 389 (435)
Q Consensus 310 ~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~~lPvaaYqVSGEYaMik 389 (435)
....+||++.+..=.+-|||+|+ |-+- .-.|-++++.+..++|+..|++.|-.
T Consensus 156 ---------------~~~~~eai~Ra~ay~~AGAD~v~-------v~~~-~~~~~~~~~~~~~~~Pl~~~~~~~~~---- 208 (243)
T cd00377 156 ---------------EEGLDEAIERAKAYAEAGADGIF-------VEGL-KDPEEIRAFAEAPDVPLNVNMTPGGN---- 208 (243)
T ss_pred ---------------CCCHHHHHHHHHHHHHcCCCEEE-------eCCC-CCHHHHHHHHhcCCCCEEEEecCCCC----
Confidence 34579999999999999999999 7443 36788899999999999999876532
Q ss_pred HHHHCCCCchhhHHHHHHHHHHHhcccEeeh
Q 013861 390 AGGALKMIDEQRVMMESLMCLRRAGADIILT 420 (435)
Q Consensus 390 aAa~~G~ide~~~v~Esl~~ikRAGAd~IiT 420 (435)
++ +...+.+.|.+.|+.
T Consensus 209 ------~~--------~~~~l~~lG~~~v~~ 225 (243)
T cd00377 209 ------LL--------TVAELAELGVRRVSY 225 (243)
T ss_pred ------CC--------CHHHHHHCCCeEEEE
Confidence 22 344567779988764
No 13
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=96.28 E-value=0.042 Score=53.61 Aligned_cols=210 Identities=17% Similarity=0.192 Sum_probs=130.9
Q ss_pred CCCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCC-----HHHHHHHHHHHCCCeEEEeeec
Q 013861 146 AMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGL-----VPRTIWLLKDRYPDLVIYTDVA 220 (435)
Q Consensus 146 sMPGv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~-----v~raIr~iK~~~Pdl~IitDVc 220 (435)
.|||+|=... .+-+-+.|+..+.+=+-.. ..+..+.+-+. +...++.|.+..|.+-|++|.=
T Consensus 15 ~~~~ayD~~s-------A~i~e~aG~dai~v~~s~~------a~~~G~pD~~~vtl~em~~~~~~I~r~~~~~pviaD~~ 81 (240)
T cd06556 15 ATLTAYDYSM-------AKQFADAGLNVMLVGDSQG------MTVAGYDDTLPYPVNDVPYHVRAVRRGAPLALIVADLP 81 (240)
T ss_pred EEecCCCHHH-------HHHHHHcCCCEEEEChHHH------HHhcCCCCCCCcCHHHHHHHHHHHHhhCCCCCEEEeCC
Confidence 3888854433 2223345999888732110 01112222233 3356777788888889999962
Q ss_pred ccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCC--CCchHHHHHHHHHHCCCCCceeechhhhhc
Q 013861 221 LDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDM--MDGRVGAIRAALDAEGFQHVSIMSYTAKYA 298 (435)
Q Consensus 221 Lc~YTshGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDM--MDGrVgAIR~aLD~~Gf~~v~IMSYSaKyA 298 (435)
.|.=.+ .+...+.+-.+.++||+.|--.|- |-.+|.+||+ +| +.||...-=+.
T Consensus 82 ---------------~G~g~~---~~~~~~~~~~l~~aGa~gv~iED~~~~~~~i~ai~~----a~---i~ViaRtd~~p 136 (240)
T cd06556 82 ---------------FGAYGA---PTAAFELAKTFMRAGAAGVKIEGGEWHIETLQMLTA----AA---VPVIAHTGLTP 136 (240)
T ss_pred ---------------CCCCcC---HHHHHHHHHHHHHcCCcEEEEcCcHHHHHHHHHHHH----cC---CeEEEEeCCch
Confidence 232222 123455566677899999988885 2234444443 34 68888754332
Q ss_pred ccccccchhhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhCCCCeEE
Q 013861 299 SSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAA 378 (435)
Q Consensus 299 SafYGPFRdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~~lPvaa 378 (435)
+++ . .+|--|-|.......+|+|+.+..=.+-|||+|. +. +. =.+.++++.+..++|+..
T Consensus 137 q~~--------~---~~gg~~~~~~~~~~~~~ai~Ra~ay~~AGAd~i~-------~e-~~-~~e~~~~i~~~~~~P~~~ 196 (240)
T cd06556 137 QSV--------N---TSGGDEGQYRGDEAGEQLIADALAYAPAGADLIV-------ME-CV-PVELAKQITEALAIPLAG 196 (240)
T ss_pred hhh--------h---ccCCceeeccCHHHHHHHHHHHHHHHHcCCCEEE-------Ec-CC-CHHHHHHHHHhCCCCEEE
Confidence 211 0 0111133444555678999999998899999999 64 55 799999999999999876
Q ss_pred EEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEeehhcHHHHHHH
Q 013861 379 YQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTYFALQAARC 429 (435)
Q Consensus 379 YqVSGEYaMikaAa~~G~ide~~~v~Esl~~ikRAGAd~IiTYfA~~~a~~ 429 (435)
.-+|. ++|.+-.+++-++++. .+ -...|+++.+++
T Consensus 197 -~gag~-----------~~dgq~lv~~d~lg~~---~~-~~p~f~~~~~~~ 231 (240)
T cd06556 197 -IGAGS-----------GTDGQFLVLADAFGIT---GG-HIPKFAKNFHAE 231 (240)
T ss_pred -EecCc-----------CCCceEEeHHhhhccc---CC-CCCchHHHHhhh
Confidence 55554 5788878888887774 22 267777777664
No 14
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=96.27 E-value=0.0055 Score=62.83 Aligned_cols=109 Identities=27% Similarity=0.335 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCCCceeechhhhhcccccccchhhhcCCCC-CCCccccC
Q 013861 244 TVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPR-FGDKKTYQ 322 (435)
Q Consensus 244 Tv~~Lak~Avs~A~AGADiVAPSDMMDGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRdA~~Sap~-fgDRktYQ 322 (435)
+.+.+++++-.++++|+|.|- |.++..+-+-|++.-+..- .++|++.+.. -|.++-|-
T Consensus 144 d~~~la~~~~~l~~gGvD~Ik----------------dde~~ge~~~~~~eER~~~-----v~~av~~a~~~TG~~~~y~ 202 (367)
T cd08205 144 SPEELAELAYELALGGIDLIK----------------DDELLADQPYAPFEERVRA-----CMEAVRRANEETGRKTLYA 202 (367)
T ss_pred CHHHHHHHHHHHHhcCCCeee----------------ccccccCcccCCHHHHHHH-----HHHHHHHHHHhhCCcceEE
Confidence 356788888999999999986 3344455555555555433 3444544432 36788888
Q ss_pred CCC-CCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhCCCCeEEEE
Q 013861 323 MNP-ANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAAYQ 380 (435)
Q Consensus 323 mdp-~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~~lPvaaYq 380 (435)
.+. +..+|+++.++.-.+.|||.+| |-|-..+++.++.+++..++||.++-
T Consensus 203 ~nit~~~~e~i~~a~~a~~~Gad~vm-------v~~~~~g~~~~~~l~~~~~lpi~~H~ 254 (367)
T cd08205 203 PNITGDPDELRRRADRAVEAGANALL-------INPNLVGLDALRALAEDPDLPIMAHP 254 (367)
T ss_pred EEcCCCHHHHHHHHHHHHHcCCCEEE-------EecccccccHHHHHHhcCCCeEEEcc
Confidence 887 6778999999998999999999 99999999999999998899998853
No 15
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=95.86 E-value=0.2 Score=44.11 Aligned_cols=102 Identities=21% Similarity=0.232 Sum_probs=64.1
Q ss_pred cHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCC-CceeechhhhhcccccccchhhhcCCCCCCCcc
Q 013861 241 NDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQ-HVSIMSYTAKYASSFYGPFREALDSNPRFGDKK 319 (435)
Q Consensus 241 ND~Tv~~Lak~Avs~A~AGADiVAPSDMMDGrVgAIR~aLD~~Gf~-~v~IMSYSaKyASafYGPFRdA~~Sap~fgDRk 319 (435)
+.+.++.+++.++ ++|+|.|.... ..++...+..+ . +++|+.=.... +
T Consensus 11 d~~~~~~~~~~~~---~~gv~gi~~~g------~~i~~~~~~~~-~~~~~v~~~v~~~-~-------------------- 59 (201)
T cd00945 11 TLEDIAKLCDEAI---EYGFAAVCVNP------GYVRLAADALA-GSDVPVIVVVGFP-T-------------------- 59 (201)
T ss_pred CHHHHHHHHHHHH---HhCCcEEEECH------HHHHHHHHHhC-CCCCeEEEEecCC-C--------------------
Confidence 5666666666554 58999887664 44444444432 2 56665321110 0
Q ss_pred ccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCch---------HHHHHHHHhh--CCCCeEEEEechH
Q 013861 320 TYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPY---------LDVIRLLRDK--YPLPIAAYQVSGE 384 (435)
Q Consensus 320 tYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~Y---------LDIIr~vk~~--~~lPvaaYqVSGE 384 (435)
.+ ...++++.+++.=.+-|||.++ +-|-..| ++.++++.+. .++|+..|+.-+-
T Consensus 60 ~~----~~~~~~~~~a~~a~~~Gad~i~-------v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~ 124 (201)
T cd00945 60 GL----TTTEVKVAEVEEAIDLGADEID-------VVINIGSLKEGDWEEVLEEIAAVVEAADGGLPLKVILETRG 124 (201)
T ss_pred CC----CcHHHHHHHHHHHHHcCCCEEE-------EeccHHHHhCCCHHHHHHHHHHHHHHhcCCceEEEEEECCC
Confidence 01 2356777766666667999999 7664322 5888889888 4899999998553
No 16
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=95.30 E-value=0.69 Score=42.05 Aligned_cols=170 Identities=20% Similarity=0.261 Sum_probs=100.8
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCC
Q 013861 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDG 237 (435)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTshGHcGIv~e~g 237 (435)
...+.++.+.+. ++.+-+ |. |- ...+| ...|+.||+.+|++.|+.|.-+..+
T Consensus 14 ~~~~~~~~l~~~-i~~iei-g~-~~----------~~~~g--~~~i~~i~~~~~~~~i~~~~~v~~~------------- 65 (202)
T cd04726 14 EALELAKKVPDG-VDIIEA-GT-PL----------IKSEG--MEAVRALREAFPDKIIVADLKTADA------------- 65 (202)
T ss_pred HHHHHHHHhhhc-CCEEEc-CC-HH----------HHHhC--HHHHHHHHHHCCCCEEEEEEEeccc-------------
Confidence 477777777777 877665 42 21 12334 5789999999999988877654311
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCeecCCCCC-CchHHHHHHHHHHCCCCCceeechhhhhcccccccchhhhcCCCCCC
Q 013861 238 VIMNDETVHQLCKQAVSQARAGADVVSPSDMM-DGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFG 316 (435)
Q Consensus 238 ~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMM-DGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRdA~~Sap~fg 316 (435)
.| .++-..+++|||++.--+.. ......+-+...++|. .+.+ .
T Consensus 66 --~~--------~~~~~~~~aGad~i~~h~~~~~~~~~~~i~~~~~~g~-~~~v---------~---------------- 109 (202)
T cd04726 66 --GA--------LEAEMAFKAGADIVTVLGAAPLSTIKKAVKAAKKYGK-EVQV---------D---------------- 109 (202)
T ss_pred --cH--------HHHHHHHhcCCCEEEEEeeCCHHHHHHHHHHHHHcCC-eEEE---------E----------------
Confidence 11 23456789999999843322 1233334444444442 1110 0
Q ss_pred CccccCCCCCCHHHHHHHHHhcccccccEEecc-cCCCcccCCCchHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCC
Q 013861 317 DKKTYQMNPANYREALVEAQADESEGADILLFS-VLGSQVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALK 395 (435)
Q Consensus 317 DRktYQmdp~N~~EAlre~~~D~~EGADilM~~-~~~~~VKPal~YLDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G 395 (435)
-+.|.+..|+++ +. +.|+|++.+. ....+-+....+.+-|+.+++..++|+.+ .|
T Consensus 110 -----~~~~~t~~e~~~-~~---~~~~d~v~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~---~G------------ 165 (202)
T cd04726 110 -----LIGVEDPEKRAK-LL---KLGVDIVILHRGIDAQAAGGWWPEDDLKKVKKLLGVKVAV---AG------------ 165 (202)
T ss_pred -----EeCCCCHHHHHH-HH---HCCCCEEEEcCcccccccCCCCCHHHHHHHHhhcCCCEEE---EC------------
Confidence 024447777665 22 3599998842 11122222346789999999876788743 33
Q ss_pred CCchhhHHHHHHHHHHHhcccEeeh
Q 013861 396 MIDEQRVMMESLMCLRRAGADIILT 420 (435)
Q Consensus 396 ~ide~~~v~Esl~~ikRAGAd~IiT 420 (435)
-++. |.+..+..+|||.++.
T Consensus 166 GI~~-----~~i~~~~~~Gad~vvv 185 (202)
T cd04726 166 GITP-----DTLPEFKKAGADIVIV 185 (202)
T ss_pred CcCH-----HHHHHHHhcCCCEEEE
Confidence 4453 4567788999998763
No 17
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=95.11 E-value=1.3 Score=39.11 Aligned_cols=152 Identities=15% Similarity=0.176 Sum_probs=90.3
Q ss_pred chhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCC--eEEEeeecccCCCCCCcce
Q 013861 154 GWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPD--LVIYTDVALDPYSSDGHDG 231 (435)
Q Consensus 154 s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pd--l~IitDVcLc~YTshGHcG 231 (435)
+.+ .+.+.++.+.+.|++.+.+.| +.++.+++..++ +-|++=+. ..|
T Consensus 11 d~~-~~~~~~~~~~~~gv~gi~~~g----------------------~~i~~~~~~~~~~~~~v~~~v~--~~~------ 59 (201)
T cd00945 11 TLE-DIAKLCDEAIEYGFAAVCVNP----------------------GYVRLAADALAGSDVPVIVVVG--FPT------ 59 (201)
T ss_pred CHH-HHHHHHHHHHHhCCcEEEECH----------------------HHHHHHHHHhCCCCCeEEEEec--CCC------
Confidence 443 588889999999999998877 567777776654 55553221 111
Q ss_pred eecCCCccccHHHHHHHHHHHHHHHHcCCCeec---CCCC-----CCchHHHHHHHHHHCCCCCceeechhhhhcccccc
Q 013861 232 IVREDGVIMNDETVHQLCKQAVSQARAGADVVS---PSDM-----MDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYG 303 (435)
Q Consensus 232 Iv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVA---PSDM-----MDGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYG 303 (435)
+. .+.+...+.+-...++|||.|. |-.- .++-+..+|+..++.+ .+.++|-|-.
T Consensus 60 -----~~----~~~~~~~~~a~~a~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~pv~iy~~-------- 121 (201)
T cd00945 60 -----GL----TTTEVKVAEVEEAIDLGADEIDVVINIGSLKEGDWEEVLEEIAAVVEAAD-GGLPLKVILE-------- 121 (201)
T ss_pred -----CC----CcHHHHHHHHHHHHHcCCCEEEEeccHHHHhCCCHHHHHHHHHHHHHHhc-CCceEEEEEE--------
Confidence 11 3344555566666788999875 2211 2555666666666541 2567887753
Q ss_pred cchhhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCC----CchHHHHHHHHhhC--CCCeE
Q 013861 304 PFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPG----LPYLDVIRLLRDKY--PLPIA 377 (435)
Q Consensus 304 PFRdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPa----l~YLDIIr~vk~~~--~lPva 377 (435)
|.+. +++....+..+.+ .+.|+|+|= +.++ ...++-++.+++.+ ++|+.
T Consensus 122 p~~~---------------~~~~~~~~~~~~~---~~~g~~~iK-------~~~~~~~~~~~~~~~~~i~~~~~~~~~v~ 176 (201)
T cd00945 122 TRGL---------------KTADEIAKAARIA---AEAGADFIK-------TSTGFGGGGATVEDVKLMKEAVGGRVGVK 176 (201)
T ss_pred CCCC---------------CCHHHHHHHHHHH---HHhCCCEEE-------eCCCCCCCCCCHHHHHHHHHhcccCCcEE
Confidence 1111 3443444443333 247999876 3333 23677888888877 55665
Q ss_pred EE
Q 013861 378 AY 379 (435)
Q Consensus 378 aY 379 (435)
++
T Consensus 177 ~~ 178 (201)
T cd00945 177 AA 178 (201)
T ss_pred EE
Confidence 43
No 18
>PLN02489 homocysteine S-methyltransferase
Probab=95.11 E-value=0.82 Score=46.54 Aligned_cols=226 Identities=15% Similarity=0.212 Sum_probs=138.8
Q ss_pred hHHHHHHH-HHHcCCCeEEE---eecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHC---------------------CC
Q 013861 158 GLVQEVAK-ARDVGVNSVVL---FPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRY---------------------PD 212 (435)
Q Consensus 158 ~l~~~v~~-~~~~GI~sv~L---Fgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~---------------------Pd 212 (435)
++++.+.+ -++.|-. |+. |+.-+...+ ..|-+...-+.+..+++++.|+.. .+
T Consensus 55 e~V~~vH~~yl~AGAd-vI~TnTy~a~~~~l~-~~g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~~~~~ 132 (335)
T PLN02489 55 HLIRKVHLDYLEAGAD-IIITASYQATIQGFE-SRGLSREESETLLRKSVEIACEARDIFWDKCQKGSTSRPGRELSYRP 132 (335)
T ss_pred HHHHHHHHHHHHhCCC-EEEecccccCHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccCCCC
Confidence 46666664 6889987 444 442111111 111100011346777888777553 25
Q ss_pred eEEEeeecccCCCCCCcceeecC---CCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC-chHHHHHHHHHHCCCCCc
Q 013861 213 LVIYTDVALDPYSSDGHDGIVRE---DGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMD-GRVGAIRAALDAEGFQHV 288 (435)
Q Consensus 213 l~IitDVcLc~YTshGHcGIv~e---~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMMD-GrVgAIR~aLD~~Gf~~v 288 (435)
.+|..++ -||-..-+.|--.. +..+.-++=.+....|+-.++++|+|+|+=--|.+ -.+.++.+++.+.+-..-
T Consensus 133 ~~VaGsi--GP~g~~l~~g~ey~g~y~~~~~~~e~~~~~~~qi~~l~~~gvD~i~~ET~~~l~E~~a~~~~~~~~~~~~p 210 (335)
T PLN02489 133 ILVAASI--GSYGAYLADGSEYSGDYGPSVTLEKLKDFHRRRLQVLAEAGPDLIAFETIPNKLEAQAYVELLEEENIKIP 210 (335)
T ss_pred cEEEEEc--CCccccccCCcccCCCCccCCCHHHHHHHHHHHHHHHHhCCCCEEEEeccCChHHHHHHHHHHHHcCCCCe
Confidence 7788775 45554433332110 01256677777788889899999999999998888 456678888877653223
Q ss_pred eeechhhhhcccccccchhhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHH
Q 013861 289 SIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLL 368 (435)
Q Consensus 289 ~IMSYSaKyASafYGPFRdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~v 368 (435)
.++|.+.+ + + ..-++-.+..+++..+.. ..++|.|.+..- .|. ..+.+|+.+
T Consensus 211 ~~iS~t~~----------~---------~--~~l~~G~~~~~~~~~~~~--~~~~~~iGiNC~----~p~-~~~~~l~~l 262 (335)
T PLN02489 211 AWISFNSK----------D---------G--VNVVSGDSLLECASIADS--CKKVVAVGINCT----PPR-FIHGLILSI 262 (335)
T ss_pred EEEEEEeC----------C---------C--CccCCCCcHHHHHHHHHh--cCCceEEEecCC----CHH-HHHHHHHHH
Confidence 34454321 1 0 122344457777666532 247888885553 243 567899999
Q ss_pred HhhCCCCeEEEEechHHHHHHHHHHCCCCch----hhHHHHHHHHHHHhcccEe
Q 013861 369 RDKYPLPIAAYQVSGEYSMIKAGGALKMIDE----QRVMMESLMCLRRAGADII 418 (435)
Q Consensus 369 k~~~~lPvaaYqVSGEYaMikaAa~~G~ide----~~~v~Esl~~ikRAGAd~I 418 (435)
+...+.|+.+|=-+|+. ......+|... ...+.|....++.+||.+|
T Consensus 263 ~~~~~~pl~vyPNaG~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ga~iI 313 (335)
T PLN02489 263 RKVTSKPIVVYPNSGET---YDGEAKEWVESTGVSDEDFVSYVNKWRDAGASLI 313 (335)
T ss_pred HhhcCCcEEEECCCCCC---CCCccCcccCCCCCCHHHHHHHHHHHHHCCCcEE
Confidence 98889999999999984 22234567521 2357788888999999886
No 19
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=95.03 E-value=2.5 Score=39.02 Aligned_cols=156 Identities=15% Similarity=0.212 Sum_probs=94.3
Q ss_pred hhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCC
Q 013861 157 HGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVRED 236 (435)
Q Consensus 157 ~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTshGHcGIv~e~ 236 (435)
+.+++.++.+++.|++.|-+ - .|++. ....|+.+++.+|++.|.+..
T Consensus 16 ~~~~~~~~~l~~~G~~~vev-~-----~~~~~----------~~~~i~~l~~~~~~~~iGag~----------------- 62 (190)
T cd00452 16 EDALALAEALIEGGIRAIEI-T-----LRTPG----------ALEAIRALRKEFPEALIGAGT----------------- 62 (190)
T ss_pred HHHHHHHHHHHHCCCCEEEE-e-----CCChh----------HHHHHHHHHHHCCCCEEEEEe-----------------
Confidence 35889999999999998776 1 23221 444999999999987665432
Q ss_pred CccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCCCceeechhhhhcccccccchhhhcCCCCCC
Q 013861 237 GVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFG 316 (435)
Q Consensus 237 g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMMDGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRdA~~Sap~fg 316 (435)
|.+.+.++ ...++|||.|.-.. .|-. +..++-++ |
T Consensus 63 --v~~~~~~~-------~a~~~Ga~~i~~p~-~~~~-----------------~~~~~~~~-----~------------- 97 (190)
T cd00452 63 --VLTPEQAD-------AAIAAGAQFIVSPG-LDPE-----------------VVKAANRA-----G------------- 97 (190)
T ss_pred --CCCHHHHH-------HHHHcCCCEEEcCC-CCHH-----------------HHHHHHHc-----C-------------
Confidence 22222222 23468999664211 1211 11111110 1
Q ss_pred CccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCc-hHHHHHHHHhhC-CCCeEEEEechHHHHHHHHHHC
Q 013861 317 DKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLP-YLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGAL 394 (435)
Q Consensus 317 DRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~-YLDIIr~vk~~~-~lPvaaYqVSGEYaMikaAa~~ 394 (435)
..+-....|..|+.+.. +.|||+|. +=|+.+ =.+.++.++..+ ++|+.| -
T Consensus 98 --~~~i~gv~t~~e~~~A~----~~Gad~i~-------~~p~~~~g~~~~~~l~~~~~~~p~~a---------------~ 149 (190)
T cd00452 98 --IPLLPGVATPTEIMQAL----ELGADIVK-------LFPAEAVGPAYIKALKGPFPQVRFMP---------------T 149 (190)
T ss_pred --CcEECCcCCHHHHHHHH----HCCCCEEE-------EcCCcccCHHHHHHHHhhCCCCeEEE---------------e
Confidence 01222344777866553 58999999 434322 367788888877 488876 4
Q ss_pred CCCchhhHHHHHHHHHHHhcccEeehhcH
Q 013861 395 KMIDEQRVMMESLMCLRRAGADIILTYFA 423 (435)
Q Consensus 395 G~ide~~~v~Esl~~ikRAGAd~IiTYfA 423 (435)
|-++. |.+..+..+|||.|..-.+
T Consensus 150 GGI~~-----~n~~~~~~~G~~~v~v~s~ 173 (190)
T cd00452 150 GGVSL-----DNAAEWLAAGVVAVGGGSL 173 (190)
T ss_pred CCCCH-----HHHHHHHHCCCEEEEEchh
Confidence 55665 5667888899999765443
No 20
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=94.90 E-value=1.2 Score=48.74 Aligned_cols=219 Identities=17% Similarity=0.188 Sum_probs=134.8
Q ss_pred hHHHHHHH-HHHcCCCeEEE--eecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHC-CCeEEEeeecccCCCCCCcceee
Q 013861 158 GLVQEVAK-ARDVGVNSVVL--FPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRY-PDLVIYTDVALDPYSSDGHDGIV 233 (435)
Q Consensus 158 ~l~~~v~~-~~~~GI~sv~L--Fgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~-Pdl~IitDVcLc~YTshGHcGIv 233 (435)
++++++.+ -++.|-.-+.- |+.-+..++ ..|-+ ..-..+..+|+++.++.. .+..|..++ -||...|
T Consensus 43 e~i~~vH~~yl~AGAdvi~TnTy~as~~~l~-~~g~~-~~~~~l~~~av~lAr~a~~~~~~Vagsi--GP~g~~~----- 113 (612)
T PRK08645 43 ELILRIHREYIEAGADVIQTNTFGANRIKLK-RYGLE-DKVKEINRAAVRLAREAAGDDVYVAGTI--GPIGGRG----- 113 (612)
T ss_pred HHHHHHHHHHHHhCCCEEecCcccccHHHHH-hcCch-HHHHHHHHHHHHHHHHHhcCCCeEEEeC--CCCCCCC-----
Confidence 46666664 68999874332 543222221 12211 123456778888888776 346677764 4665532
Q ss_pred cCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC-chHHHHHHHHHHCCCCCce-eechhhhhcccccccchhhhcC
Q 013861 234 REDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMD-GRVGAIRAALDAEGFQHVS-IMSYTAKYASSFYGPFREALDS 311 (435)
Q Consensus 234 ~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMMD-GrVgAIR~aLD~~Gf~~v~-IMSYSaKyASafYGPFRdA~~S 311 (435)
..|.++.++-.+....|+-.++++|+|+++=--|.+ -.+.++.+++.+.+ +++ ++|.+.+
T Consensus 114 -~~~~~~~~~~~~~~~~~~~~l~~~gvD~l~~ET~~~~~Ea~a~~~a~~~~~--~~p~~~Sf~~~--------------- 175 (612)
T PRK08645 114 -PLGDISLEEIRREFREQIDALLEEGVDGLLLETFYDLEELLLALEAAREKT--DLPIIAQVAFH--------------- 175 (612)
T ss_pred -CCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEccCCHHHHHHHHHHHHHhC--CCcEEEEEEEC---------------
Confidence 234566788888899999999999999999988888 44566777776553 222 2333221
Q ss_pred CCCCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhCCCCeEEEEechHHHHHHHH
Q 013861 312 NPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAG 391 (435)
Q Consensus 312 ap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~~lPvaaYqVSGEYaMikaA 391 (435)
......+=....+++..+. +.|+|.+++..-- .|. .-+.+|+.++..+++|+++|=-+|+-.- ..
T Consensus 176 ------~~g~l~~G~~~~~~~~~~~---~~~~~avGiNC~~---~p~-~~~~~l~~l~~~~~~pl~vypNaG~~~~--~~ 240 (612)
T PRK08645 176 ------EDGVTQNGTSLEEALKELV---AAGADVVGLNCGL---GPY-HMLEALERIPIPENAPLSAYPNAGLPEY--VD 240 (612)
T ss_pred ------CCCeeCCCCCHHHHHHHHH---hCCCCEEEecCCC---CHH-HHHHHHHHHHhccCceEEEEECCCCCCC--CC
Confidence 1123345456777777764 3579999944420 121 2455666666667899999999999321 11
Q ss_pred HHCCCCchhhHHHHHHHHHHHhcccEe
Q 013861 392 GALKMIDEQRVMMESLMCLRRAGADII 418 (435)
Q Consensus 392 a~~G~ide~~~v~Esl~~ikRAGAd~I 418 (435)
...-|-.....+-|....+..+||.+|
T Consensus 241 ~~~~~~~~p~~~~~~~~~~~~~Ga~ii 267 (612)
T PRK08645 241 GRYVYSANPEYFAEYALEFVEQGVRLI 267 (612)
T ss_pred CccccCCCHHHHHHHHHHHHHhCCCEE
Confidence 111222233568888999999999987
No 21
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=94.51 E-value=1.6 Score=42.07 Aligned_cols=151 Identities=13% Similarity=0.142 Sum_probs=99.0
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCC
Q 013861 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDG 237 (435)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTshGHcGIv~e~g 237 (435)
.+++.++.+.+.||+.+=+ +- . +++ -.++|+.++++||++.|-+|.-++
T Consensus 28 ~a~~i~~al~~~Gi~~iEi-tl-----~--------~~~--~~~~I~~l~~~~p~~~IGAGTVl~--------------- 76 (212)
T PRK05718 28 DAVPLAKALVAGGLPVLEV-TL-----R--------TPA--ALEAIRLIAKEVPEALIGAGTVLN--------------- 76 (212)
T ss_pred HHHHHHHHHHHcCCCEEEE-ec-----C--------Ccc--HHHHHHHHHHHCCCCEEEEeeccC---------------
Confidence 5899999999999998766 21 1 111 347999999999999888765443
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCCCceeechhhhhcccccccchhhhcCCCCCCC
Q 013861 238 VIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGD 317 (435)
Q Consensus 238 ~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMMDGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRdA~~Sap~fgD 317 (435)
+ +++-...+||||++--..+-+.-+.. +.+ |+ +..-|.
T Consensus 77 ----~-------~~a~~a~~aGA~FivsP~~~~~vi~~---a~~--------------------~~-----i~~iPG--- 114 (212)
T PRK05718 77 ----P-------EQLAQAIEAGAQFIVSPGLTPPLLKA---AQE--------------------GP-----IPLIPG--- 114 (212)
T ss_pred ----H-------HHHHHHHHcCCCEEECCCCCHHHHHH---HHH--------------------cC-----CCEeCC---
Confidence 3 34555678999987666666644433 332 11 111122
Q ss_pred ccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCch--HHHHHHHHhhCC-CCeEEEEechHHHHHHHHHHC
Q 013861 318 KKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPY--LDVIRLLRDKYP-LPIAAYQVSGEYSMIKAGGAL 394 (435)
Q Consensus 318 RktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~Y--LDIIr~vk~~~~-lPvaaYqVSGEYaMikaAa~~ 394 (435)
..+..|+.. + .+-|||+|= +-|+... .+-|+.+|.-++ +|+. + .
T Consensus 115 -------~~TptEi~~-a---~~~Ga~~vK-------lFPa~~~gg~~~lk~l~~p~p~~~~~---p------------t 161 (212)
T PRK05718 115 -------VSTPSELML-G---MELGLRTFK-------FFPAEASGGVKMLKALAGPFPDVRFC---P------------T 161 (212)
T ss_pred -------CCCHHHHHH-H---HHCCCCEEE-------EccchhccCHHHHHHHhccCCCCeEE---E------------e
Confidence 124456333 2 257999999 9998865 788999998774 6665 3 3
Q ss_pred CCCchhhHHHHHHHHHHHhcccEee
Q 013861 395 KMIDEQRVMMESLMCLRRAGADIIL 419 (435)
Q Consensus 395 G~ide~~~v~Esl~~ikRAGAd~Ii 419 (435)
|-++. |.+..+..||+..+.
T Consensus 162 GGV~~-----~ni~~~l~ag~v~~v 181 (212)
T PRK05718 162 GGISP-----ANYRDYLALPNVLCI 181 (212)
T ss_pred CCCCH-----HHHHHHHhCCCEEEE
Confidence 45665 566777788854443
No 22
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=94.24 E-value=1.7 Score=45.70 Aligned_cols=149 Identities=19% Similarity=0.188 Sum_probs=90.6
Q ss_pred ccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCC
Q 013861 188 TGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSD 267 (435)
Q Consensus 188 ~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTshGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSD 267 (435)
.|.+-+-..| ...|+.||+.+|+..|.+|.-+. |...|+ +-..+++|||++.=..
T Consensus 204 vG~~L~~~~G--~~iVk~Lr~~~~~~~I~~DLK~~-----------------Di~~~v------v~~~a~aGAD~vTVH~ 258 (391)
T PRK13307 204 AGTPLIKKFG--LEVISKIREVRPDAFIVADLKTL-----------------DTGNLE------ARMAADATADAVVISG 258 (391)
T ss_pred ECHHHHHHhC--HHHHHHHHHhCCCCeEEEEeccc-----------------ChhhHH------HHHHHhcCCCEEEEec
Confidence 4555565566 47899999999999999998763 122333 3356799999987665
Q ss_pred CCC-chHHHHHHHHHHCCCCCcee-echhhhhcccccccchhhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccE
Q 013861 268 MMD-GRVGAIRAALDAEGFQHVSI-MSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADI 345 (435)
Q Consensus 268 MMD-GrVgAIR~aLD~~Gf~~v~I-MSYSaKyASafYGPFRdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADi 345 (435)
-.. ..+.+..++..+.|. .+.| | ++|.+..|.+++. ..|.|+
T Consensus 259 ea~~~ti~~ai~~akk~Gi-kvgVD~-------------------------------lnp~tp~e~i~~l----~~~vD~ 302 (391)
T PRK13307 259 LAPISTIEKAIHEAQKTGI-YSILDM-------------------------------LNVEDPVKLLESL----KVKPDV 302 (391)
T ss_pred cCCHHHHHHHHHHHHHcCC-EEEEEE-------------------------------cCCCCHHHHHHHh----hCCCCE
Confidence 332 134445555555552 3333 2 3466777777665 568998
Q ss_pred Eeccc-CCC-cccCCCchHHHHHHHHhh-CCCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEeeh
Q 013861 346 LLFSV-LGS-QVKPGLPYLDVIRLLRDK-YPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILT 420 (435)
Q Consensus 346 lM~~~-~~~-~VKPal~YLDIIr~vk~~-~~lPvaaYqVSGEYaMikaAa~~G~ide~~~v~Esl~~ikRAGAd~IiT 420 (435)
|++.. ... .+.|+ ++-|+++|+. .++++. | .|-|+. |.+..++.+|||++|-
T Consensus 303 Vllht~vdp~~~~~~---~~kI~~ikk~~~~~~I~---V------------dGGI~~-----eti~~l~~aGADivVV 357 (391)
T PRK13307 303 VELHRGIDEEGTEHA---WGNIKEIKKAGGKILVA---V------------AGGVRV-----ENVEEALKAGADILVV 357 (391)
T ss_pred EEEccccCCCcccch---HHHHHHHHHhCCCCcEE---E------------ECCcCH-----HHHHHHHHcCCCEEEE
Confidence 87332 111 22343 4667777764 244443 3 344554 4466777899998763
No 23
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=93.87 E-value=1.3 Score=41.59 Aligned_cols=170 Identities=22% Similarity=0.270 Sum_probs=98.4
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCC
Q 013861 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDG 237 (435)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTshGHcGIv~e~g 237 (435)
.+.+..+.+.+.|++.+-+ + + ...++.+|+. .++-|+. .|--|- ++.
T Consensus 28 ~i~~~a~~~~~~G~~~~~~-~------------------~--~~~~~~i~~~-~~iPil~-----~~~~~~------~~~ 74 (219)
T cd04729 28 IMAAMALAAVQGGAVGIRA-N------------------G--VEDIRAIRAR-VDLPIIG-----LIKRDY------PDS 74 (219)
T ss_pred HHHHHHHHHHHCCCeEEEc-C------------------C--HHHHHHHHHh-CCCCEEE-----EEecCC------CCC
Confidence 3677788899999976431 1 1 1467777765 4544432 111110 011
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC----c-hHHHHHHHHHHCCCCCceeechhhhhcccccccchhhhcCC
Q 013861 238 VIMNDETVHQLCKQAVSQARAGADVVSPSDMMD----G-RVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSN 312 (435)
Q Consensus 238 ~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMMD----G-rVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRdA~~Sa 312 (435)
.+.-+++.+ +.-..+++|||+|.+..-.. + .+..+-+.+.+.| ++.++.
T Consensus 75 ~~~ig~~~~----~~~~a~~aGad~I~~~~~~~~~p~~~~~~~~i~~~~~~g--~~~iiv-------------------- 128 (219)
T cd04729 75 EVYITPTIE----EVDALAAAGADIIALDATDRPRPDGETLAELIKRIHEEY--NCLLMA-------------------- 128 (219)
T ss_pred CceeCCCHH----HHHHHHHcCCCEEEEeCCCCCCCCCcCHHHHHHHHHHHh--CCeEEE--------------------
Confidence 111122333 44555789999998854332 2 7777887888887 556552
Q ss_pred CCCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCC---CcccCCCchHHHHHHHHhhCCCCeEEEEechHHHHHH
Q 013861 313 PRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLG---SQVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIK 389 (435)
Q Consensus 313 p~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~---~~VKPal~YLDIIr~vk~~~~lPvaaYqVSGEYaMik 389 (435)
++.+.+|+.+.. +.|+|++..+..| .+..+..+-++.++++++.+++|+.+ ++
T Consensus 129 -----------~v~t~~ea~~a~----~~G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~~ipvia--~G------- 184 (219)
T cd04729 129 -----------DISTLEEALNAA----KLGFDIIGTTLSGYTEETAKTEDPDFELLKELRKALGIPVIA--EG------- 184 (219)
T ss_pred -----------ECCCHHHHHHHH----HcCCCEEEccCccccccccCCCCCCHHHHHHHHHhcCCCEEE--eC-------
Confidence 123566664332 4699999743332 11223344579999999999999885 22
Q ss_pred HHHHCCCCchhhHHHHHHHHHHHhcccEeeh
Q 013861 390 AGGALKMIDEQRVMMESLMCLRRAGADIILT 420 (435)
Q Consensus 390 aAa~~G~ide~~~v~Esl~~ikRAGAd~IiT 420 (435)
|.-+. |.+..+.++|||.|+-
T Consensus 185 -----GI~~~-----~~~~~~l~~GadgV~v 205 (219)
T cd04729 185 -----RINSP-----EQAAKALELGADAVVV 205 (219)
T ss_pred -----CCCCH-----HHHHHHHHCCCCEEEE
Confidence 23233 3344555679998874
No 24
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=93.62 E-value=1.7 Score=42.74 Aligned_cols=96 Identities=17% Similarity=0.312 Sum_probs=67.2
Q ss_pred hHHHHHHHHHHcCCCeEEEeec---------CC--CCCCCcccCcCcCCCCCHHHHHHHHHHHC-CCeEEEeeecccCCC
Q 013861 158 GLVQEVAKARDVGVNSVVLFPK---------VP--DALKSPTGDEAYNDNGLVPRTIWLLKDRY-PDLVIYTDVALDPYS 225 (435)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgv---------i~--~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~-Pdl~IitDVcLc~YT 225 (435)
...+-++.+.+.|...|-|-+- -| +...|+.|..--|.--++.+.|+.+++.+ +|+.|..++..+.+.
T Consensus 142 ~~~~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vris~~~~~ 221 (327)
T cd02803 142 DFAAAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRLSADDFV 221 (327)
T ss_pred HHHHHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEechhccC
Confidence 4666677788899999988542 11 23567777766566667788999999998 589999999887663
Q ss_pred CCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCC
Q 013861 226 SDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSD 267 (435)
Q Consensus 226 shGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSD 267 (435)
..| . |.+...+.+-...++|+|.|.-|.
T Consensus 222 ~~g----------~----~~~e~~~la~~l~~~G~d~i~vs~ 249 (327)
T cd02803 222 PGG----------L----TLEEAIEIAKALEEAGVDALHVSG 249 (327)
T ss_pred CCC----------C----CHHHHHHHHHHHHHcCCCEEEeCC
Confidence 222 2 233344555566789999998654
No 25
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=93.09 E-value=0.72 Score=49.31 Aligned_cols=50 Identities=14% Similarity=0.207 Sum_probs=38.9
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEe-eec
Q 013861 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYT-DVA 220 (435)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~Iit-DVc 220 (435)
+..+.++.+++.|++.|.|-- .+ .++-.+...|+.||++|||+.||+ ||+
T Consensus 227 ~~~~~a~~Lv~aGvd~i~~D~----a~---------~~~~~~~~~i~~ik~~~p~~~v~agnv~ 277 (479)
T PRK07807 227 DVAAKARALLEAGVDVLVVDT----AH---------GHQEKMLEALRAVRALDPGVPIVAGNVV 277 (479)
T ss_pred hHHHHHHHHHHhCCCEEEEec----cC---------CccHHHHHHHHHHHHHCCCCeEEeeccC
Confidence 467889999999999977622 11 114557789999999999999999 775
No 26
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=93.02 E-value=6.1 Score=40.31 Aligned_cols=146 Identities=21% Similarity=0.309 Sum_probs=93.7
Q ss_pred HHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCcc
Q 013861 160 VQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVI 239 (435)
Q Consensus 160 ~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTshGHcGIv~e~g~I 239 (435)
++..+-+-+.|--+||..-.||.+.+...|-.-. ++ ++-|+.||+.. ++=|| |+++ .|+
T Consensus 18 ~~qa~~ae~aga~~v~~~~~~~~~~~~~~~v~R~--~~--~~~I~~Ik~~V-~iPVI--------------Gi~K-~~~- 76 (283)
T cd04727 18 AEQARIAEEAGAVAVMALERVPADIRAAGGVARM--AD--PKMIKEIMDAV-SIPVM--------------AKVR-IGH- 76 (283)
T ss_pred HHHHHHHHHcCceEEeeeccCchhhhhcCCeeec--CC--HHHHHHHHHhC-CCCeE--------------Eeee-hhH-
Confidence 5666777889999999999998765443332211 22 35689999987 77666 3443 233
Q ss_pred ccHHHHHHHHHHHHHHHHcCCCeecCCCCC---CchHHHHHHHHHHCCCCCceeechhhhhcccccccchhhhcCCCCCC
Q 013861 240 MNDETVHQLCKQAVSQARAGADVVSPSDMM---DGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFG 316 (435)
Q Consensus 240 dND~Tv~~Lak~Avs~A~AGADiVAPSDMM---DGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRdA~~Sap~fg 316 (435)
-+.|....++|+|||.=|+-. |--+..||. .| ++.+|+
T Consensus 77 ---------~~Ea~~L~eaGvDiIDaT~r~rP~~~~~~~iK~-----~~-~~l~MA------------------------ 117 (283)
T cd04727 77 ---------FVEAQILEALGVDMIDESEVLTPADEEHHIDKH-----KF-KVPFVC------------------------ 117 (283)
T ss_pred ---------HHHHHHHHHcCCCEEeccCCCCcHHHHHHHHHH-----Hc-CCcEEc------------------------
Confidence 667888899999999544332 112222222 24 455553
Q ss_pred CccccCCCCCCHHHHHHHHHhcccccccEEecccC----CC------------------------c----ccCCCchHHH
Q 013861 317 DKKTYQMNPANYREALVEAQADESEGADILLFSVL----GS------------------------Q----VKPGLPYLDV 364 (435)
Q Consensus 317 DRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~----~~------------------------~----VKPal~YLDI 364 (435)
|-+|..||++.. ++|||||= +.| |. . -|...+=+|.
T Consensus 118 -------D~stleEal~a~----~~Gad~I~-TTl~gyT~~~~~~~~~~~~i~~~i~~~~gyt~~t~~~~~~~~~~d~el 185 (283)
T cd04727 118 -------GARNLGEALRRI----SEGAAMIR-TKGEAGTGNVVEAVRHMRAVNGEIRKLQSMSEEELYAVAKEIQAPYEL 185 (283)
T ss_pred -------cCCCHHHHHHHH----HCCCCEEE-ecCCCCCCcHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcccCCCHHH
Confidence 456788888876 67999987 222 11 0 1223355799
Q ss_pred HHHHHhhCCCCeE
Q 013861 365 IRLLRDKYPLPIA 377 (435)
Q Consensus 365 Ir~vk~~~~lPva 377 (435)
|+++++..++||.
T Consensus 186 Lk~l~~~~~iPVV 198 (283)
T cd04727 186 VKETAKLGRLPVV 198 (283)
T ss_pred HHHHHHhcCCCeE
Confidence 9999999999986
No 27
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=92.62 E-value=3.6 Score=45.31 Aligned_cols=193 Identities=17% Similarity=0.203 Sum_probs=110.9
Q ss_pred CCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEE--ee----ec
Q 013861 147 MPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIY--TD----VA 220 (435)
Q Consensus 147 MPGv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~Ii--tD----Vc 220 (435)
.++-.|++.+ +.+..++.+-+.|+.++=..|- +.-|. + .-+-.+.+ ...||.|++..|+.-+. +- +.
T Consensus 18 s~~~tr~~~~-d~l~ia~~ld~~G~~siE~~GG---atf~~-~-~~~~~e~p-~e~lr~l~~~~~~~~lqml~Rg~n~vg 90 (593)
T PRK14040 18 SLFATRLRLD-DMLPIAAKLDKVGYWSLESWGG---ATFDA-C-IRFLGEDP-WERLRELKKAMPNTPQQMLLRGQNLLG 90 (593)
T ss_pred cccccccCHH-HHHHHHHHHHHcCCCEEEecCC---cchhh-h-ccccCCCH-HHHHHHHHHhCCCCeEEEEecCcceec
Confidence 4545588886 5889999999999999988531 11110 0 00111122 46899999999985442 22 22
Q ss_pred ccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCC---CchHHHHHHHHHHCCCCCceeechhhhh
Q 013861 221 LDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMM---DGRVGAIRAALDAEGFQHVSIMSYTAKY 297 (435)
Q Consensus 221 Lc~YTshGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMM---DGrVgAIR~aLD~~Gf~~v~IMSYSaKy 297 (435)
.++| -|..++...+.| +++|.|+|--.|-+ +.-..+|+.+- +.|+...+-++|+.
T Consensus 91 ~~~y----------------pddvv~~~v~~a---~~~Gid~~rifd~lnd~~~~~~ai~~ak-~~G~~~~~~i~yt~-- 148 (593)
T PRK14040 91 YRHY----------------ADDVVERFVERA---VKNGMDVFRVFDAMNDPRNLETALKAVR-KVGAHAQGTLSYTT-- 148 (593)
T ss_pred cccC----------------cHHHHHHHHHHH---HhcCCCEEEEeeeCCcHHHHHHHHHHHH-HcCCeEEEEEEEee--
Confidence 2222 133344444443 57899987665543 44455666665 35764444457753
Q ss_pred cccccccchhhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhCCCCeE
Q 013861 298 ASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIA 377 (435)
Q Consensus 298 ASafYGPFRdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~~lPva 377 (435)
+|.. ++.-..+..+++. +-|||.|-+.--....+|.-. -++++.+|+.+++|+.
T Consensus 149 --------------~p~~--------~~~~~~~~a~~l~---~~Gad~i~i~Dt~G~l~P~~~-~~lv~~lk~~~~~pi~ 202 (593)
T PRK14040 149 --------------SPVH--------TLQTWVDLAKQLE---DMGVDSLCIKDMAGLLKPYAA-YELVSRIKKRVDVPLH 202 (593)
T ss_pred --------------CCcc--------CHHHHHHHHHHHH---HcCCCEEEECCCCCCcCHHHH-HHHHHHHHHhcCCeEE
Confidence 1110 2223334344432 359999985544444566643 5899999999999985
Q ss_pred EEEechHHH----HHHHHHHCC
Q 013861 378 AYQVSGEYS----MIKAGGALK 395 (435)
Q Consensus 378 aYqVSGEYa----MikaAa~~G 395 (435)
+|.---+- -..+|.++|
T Consensus 203 -~H~Hnt~GlA~An~laAieAG 223 (593)
T PRK14040 203 -LHCHATTGLSTATLLKAIEAG 223 (593)
T ss_pred -EEECCCCchHHHHHHHHHHcC
Confidence 66643322 233456666
No 28
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=92.47 E-value=3.6 Score=41.03 Aligned_cols=178 Identities=21% Similarity=0.310 Sum_probs=106.7
Q ss_pred ccCCCCCceeech--h---hhHHHHHHHHHHcCCCeEEE--eecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEE
Q 013861 143 PIGAMPGCYRLGW--R---HGLVQEVAKARDVGVNSVVL--FPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVI 215 (435)
Q Consensus 143 ~I~sMPGv~r~s~--~---~~l~~~v~~~~~~GI~sv~L--Fgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~I 215 (435)
..+.|||=.+|+- + +.++++++.+.+.|+..|++ |+-.|= .+. .+-+-- ..+-+.++.+|+.+ ++
T Consensus 10 HL~pLPGsp~~~~~~~~iie~A~~ea~~l~~~GvDgiiveN~~D~Py-~~~-~~~etv---aaM~~i~~~v~~~~-~~-- 81 (254)
T PF03437_consen 10 HLPPLPGSPRYDGSMEEIIERAVREAEALEEGGVDGIIVENMGDVPY-PKR-VGPETV---AAMARIAREVRREV-SV-- 81 (254)
T ss_pred cCCCCCcCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEecCCCCCc-cCC-CCHHHH---HHHHHHHHHHHHhC-CC--
Confidence 3467899888762 1 23677888899999999998 333332 121 111111 23446777888876 22
Q ss_pred EeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHc-CCCee----------cCCCCCCchHHHHHHHHHHCC
Q 013861 216 YTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARA-GADVV----------SPSDMMDGRVGAIRAALDAEG 284 (435)
Q Consensus 216 itDVcLc~YTshGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~A-GADiV----------APSDMMDGrVgAIR~aLD~~G 284 (435)
|+ ||--- .-|+.+++. .|.| |||.| ++.+.++|+-+.+=+.-..-|
T Consensus 82 -------p~------GVnvL--~nd~~aala--------iA~A~ga~FIRv~~~~g~~~~d~G~~~~~a~e~~r~R~~l~ 138 (254)
T PF03437_consen 82 -------PV------GVNVL--RNDPKAALA--------IAAATGADFIRVNVFVGAYVTDEGIIEGCAGELLRYRKRLG 138 (254)
T ss_pred -------CE------Eeeee--cCCCHHHHH--------HHHHhCCCEEEecCEEceecccCccccccHHHHHHHHHHcC
Confidence 22 43210 013444443 3333 66654 689999998777766655667
Q ss_pred CCCceeechhhhhcccccccchhhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHH
Q 013861 285 FQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDV 364 (435)
Q Consensus 285 f~~v~IMSYSaKyASafYGPFRdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDI 364 (435)
-. |.|+..-.+-+|+. +..+...|+.+.+.. ..+||-|+.|--..-..| -++-
T Consensus 139 a~-v~ilaDV~~kh~~~---------------------l~~~~~~~~~~~a~~--~~~aDaviVtG~~TG~~~---~~~~ 191 (254)
T PF03437_consen 139 AD-VKILADVHVKHSSP---------------------LATRDLEEAAKDAVE--RGGADAVIVTGKATGEPP---DPEK 191 (254)
T ss_pred CC-eEEEeeechhhccc---------------------CCCCCHHHHHHHHHH--hcCCCEEEECCcccCCCC---CHHH
Confidence 65 88887654433332 333455666655533 589999993332222232 5788
Q ss_pred HHHHHhhCCCCeEE
Q 013861 365 IRLLRDKYPLPIAA 378 (435)
Q Consensus 365 Ir~vk~~~~lPvaa 378 (435)
|+++|+..++||..
T Consensus 192 l~~vr~~~~~PVlv 205 (254)
T PF03437_consen 192 LKRVREAVPVPVLV 205 (254)
T ss_pred HHHHHhcCCCCEEE
Confidence 99999999999984
No 29
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=92.37 E-value=4 Score=40.82 Aligned_cols=176 Identities=19% Similarity=0.263 Sum_probs=106.1
Q ss_pred cCCCCCceeec-----hhhhHHHHHHHHHHcCCCeEEE--eecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEE
Q 013861 144 IGAMPGCYRLG-----WRHGLVQEVAKARDVGVNSVVL--FPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIY 216 (435)
Q Consensus 144 I~sMPGv~r~s-----~~~~l~~~v~~~~~~GI~sv~L--Fgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~Ii 216 (435)
...+||=.+|+ +-+.++++++.+.+-|+..||+ |+-+|- .| ..+-+.- -.+.+.++.+|+.++-
T Consensus 10 l~pLPGsP~~~~~~~~i~e~A~~ea~~l~~~GvD~viveN~~d~P~-~~-~~~p~tv---a~m~~i~~~v~~~~~~---- 80 (257)
T TIGR00259 10 LLPLPGSPSFDDNLNAVIDKAWKDAMALEEGGVDAVMFENFFDAPF-LK-EVDPETV---AAMAVIAGQLKSDVSI---- 80 (257)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEecCCCCCC-cC-CCCHHHH---HHHHHHHHHHHHhcCC----
Confidence 45688888886 2234677788889999999998 444442 22 1111111 2344677788888621
Q ss_pred eeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHH-HcCCCe----------ecCCCCCCchHHHHHHHHHHCCC
Q 013861 217 TDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQA-RAGADV----------VSPSDMMDGRVGAIRAALDAEGF 285 (435)
Q Consensus 217 tDVcLc~YTshGHcGIv~e~g~IdND~Tv~~Lak~Avs~A-~AGADi----------VAPSDMMDGrVgAIR~aLD~~Gf 285 (435)
| +||= .+.||. ..|+..| .+|||. +++.+.++|+-+.+=+.-++-|
T Consensus 81 ------p------~Gvn----vL~nd~------~aal~iA~a~ga~FIRv~~~~g~~~~d~G~~~~~a~e~~r~r~~l~- 137 (257)
T TIGR00259 81 ------P------LGIN----VLRNDA------VAALAIAMAVGAKFIRVNVLTGVYASDQGIIEGNAGELIRYKKLLG- 137 (257)
T ss_pred ------C------eeee----eecCCC------HHHHHHHHHhCCCEEEEccEeeeEecccccccccHHHHHHHHHHcC-
Confidence 1 4541 122331 2333333 356664 5788889988887655555556
Q ss_pred CCceeechhhhhcccccccchhhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHH
Q 013861 286 QHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVI 365 (435)
Q Consensus 286 ~~v~IMSYSaKyASafYGPFRdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDII 365 (435)
.+|.|+.---+=+ +..+...+..|+.+++.. ..+||-|+.|-.|.=..+ =.+.+
T Consensus 138 ~~v~i~adV~~kh---------------------~~~l~~~~~~e~a~~~~~--~~~aDavivtG~~TG~~~---d~~~l 191 (257)
T TIGR00259 138 SEVKILADIVVKH---------------------AVHLGNRDLESIALDTVE--RGLADAVILSGKTTGTEV---DLELL 191 (257)
T ss_pred CCcEEEeceeecc---------------------cCcCCCCCHHHHHHHHHH--hcCCCEEEECcCCCCCCC---CHHHH
Confidence 6888887643221 222445577777776654 345999997766555443 47788
Q ss_pred HHHHhhC-CCCeE
Q 013861 366 RLLRDKY-PLPIA 377 (435)
Q Consensus 366 r~vk~~~-~lPva 377 (435)
+.+|+.. ++|+.
T Consensus 192 ~~vr~~~~~~Pvl 204 (257)
T TIGR00259 192 KLAKETVKDTPVL 204 (257)
T ss_pred HHHHhccCCCeEE
Confidence 8888744 68874
No 30
>PRK09485 mmuM homocysteine methyltransferase; Provisional
Probab=91.90 E-value=5.5 Score=39.86 Aligned_cols=226 Identities=21% Similarity=0.185 Sum_probs=133.4
Q ss_pred hHHHHHHH-HHHcCCCeEEE--eecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCC-----CeEEEeeecccCCCCCCc
Q 013861 158 GLVQEVAK-ARDVGVNSVVL--FPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYP-----DLVIYTDVALDPYSSDGH 229 (435)
Q Consensus 158 ~l~~~v~~-~~~~GI~sv~L--Fgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~P-----dl~IitDVcLc~YTshGH 229 (435)
+++.++.+ -++.|-.-+.- |+.-+..++ ..|-+...-..+..+++++.|+... +..|..++ -||...=+
T Consensus 46 e~V~~vH~~yl~AGadiI~TnTy~a~~~~l~-~~g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~VaGsi--GP~g~~l~ 122 (304)
T PRK09485 46 ELIYQVHLDYFRAGADCAITASYQATFQGFA-ARGLSEAEAEELIRRSVELAKEARDEFWAEKPLVAGSV--GPYGAYLA 122 (304)
T ss_pred HHHHHHHHHHHHhCCCEEEeeccccCHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEec--CCcccccC
Confidence 45566654 57889876544 553221111 1121111124567788888887664 37777775 34433222
Q ss_pred ceee-cCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC-chHHHHHHHHHHCCCCCceee-chhhhhcccccccch
Q 013861 230 DGIV-REDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMD-GRVGAIRAALDAEGFQHVSIM-SYTAKYASSFYGPFR 306 (435)
Q Consensus 230 cGIv-~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMMD-GrVgAIR~aLD~~Gf~~v~IM-SYSaKyASafYGPFR 306 (435)
.|-- ..+..++.|+-.+...+|+-.+.++|+|++.=--|.+ -.+.++.+++.+.. .+.+++ |.+ |.
T Consensus 123 ~~~~y~g~~~~~~~~~~~~~~~q~~~l~~~gvD~i~~ET~~~~~E~~~~~~~~~~~~-~~~pv~is~~----------~~ 191 (304)
T PRK09485 123 DGSEYRGDYGLSEEELQDFHRPRIEALAEAGADLLACETIPNLDEAEALVELLKEEF-PGVPAWLSFT----------LR 191 (304)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCCEEEEeccCCHHHHHHHHHHHHHhc-CCCcEEEEEE----------eC
Confidence 2110 0011266788888889999999999999999888877 33445555555331 233333 222 11
Q ss_pred hhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhCCCCeEEEEechHHH
Q 013861 307 EALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYS 386 (435)
Q Consensus 307 dA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~~lPvaaYqVSGEYa 386 (435)
+ ...-++-....+++..+.. ..++|.|++...| |. .-+.+++.+++..++|+.+|==+|+.-
T Consensus 192 ~-----------~g~l~~G~~~~~~~~~l~~--~~~~~~iGiNC~~----p~-~~~~~l~~~~~~~~~pl~~~PNaG~~~ 253 (304)
T PRK09485 192 D-----------GTHISDGTPLAEAAALLAA--SPQVVAVGVNCTA----PE-LVTAAIAALRAVTDKPLVVYPNSGEVY 253 (304)
T ss_pred C-----------CCcCCCCCCHHHHHHHHhc--CCCceEEEecCCC----HH-HHHHHHHHHHhccCCcEEEECCCCCCC
Confidence 1 1233455567788877742 2468999966532 43 356788888777789999998888732
Q ss_pred HHHHHHHCCCCchhh--HHHHHHHHHHHhcccEe
Q 013861 387 MIKAGGALKMIDEQR--VMMESLMCLRRAGADII 418 (435)
Q Consensus 387 MikaAa~~G~ide~~--~v~Esl~~ikRAGAd~I 418 (435)
......|.+... .+.|.+..+...|+.+|
T Consensus 254 ---~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ii 284 (304)
T PRK09485 254 ---DAVTKTWHGPADDASLGELAPEWYAAGARLI 284 (304)
T ss_pred ---CCCCCcccCCCChHHHHHHHHHHHHcCCeEE
Confidence 122345554333 56677778888888776
No 31
>PF02574 S-methyl_trans: Homocysteine S-methyltransferase; InterPro: IPR003726 S-methylmethionine: homocysteine methyltransferase 2.1.1.10 from EC from Escherichia coli accepts selenohomocysteine as a substrate. S-methylmethionine is an abundant plant product that can be utilised for methionine biosynthesis []. Human methionine synthase (5-methyltetrahydrofolate:L-homocysteine S-transmethylase; 2.1.1.13 from EC) shares 53 and 63% identity with the E. coli and the presumptive Caenorhabditis elegans proteins, respectively, and contains all residues implicated in B12 binding to the E. coli protein []. Betaine--homocysteine S-methyltransferase (2.1.1.5 from EC) converts betaine and homocysteine to dimethylglycine and methionine, respectively. This reaction is also required for the irreversible oxidation of choline [].; GO: 0008898 homocysteine S-methyltransferase activity; PDB: 1UMY_A 1LT8_B 1LT7_B 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B 1Q8J_B ....
Probab=91.70 E-value=0.29 Score=48.10 Aligned_cols=226 Identities=19% Similarity=0.201 Sum_probs=127.1
Q ss_pred hHHHHHHH-HHHcCCCeEEE--eecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCC------eEEEeeecccCCCCCC
Q 013861 158 GLVQEVAK-ARDVGVNSVVL--FPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPD------LVIYTDVALDPYSSDG 228 (435)
Q Consensus 158 ~l~~~v~~-~~~~GI~sv~L--Fgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pd------l~IitDVcLc~YTshG 228 (435)
+++.++.+ -++.|-.-+.- |+.-+..+++ .|-+...-..+..+++++.|+...+ ..|..++- ||-..=
T Consensus 41 ~~v~~iH~~yl~AGAdiI~TnTy~a~~~~l~~-~g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~~VaGsiG--P~ga~l 117 (305)
T PF02574_consen 41 ELVRQIHRDYLEAGADIITTNTYQASRERLKE-YGLSDEEAEELNRAAVELAREAADEYGSGRKVLVAGSIG--PYGAYL 117 (305)
T ss_dssp HHHHHHHHHHHHHT-SEEEEC-TT-SHHHHGG-GT-GGGCHHHHHHHHHHHHHHHHTT---TT-SEEEEEEE----S---
T ss_pred HHHHHHHHHHHHCCCCeEEecCCcCchhhhhh-cCCcHHHHHHHHHHHHHHHHHHHhhccCCCccEEEEEcc--cccccc
Confidence 46666665 57899876554 5542222221 2221111145777888888877655 77887765 222111
Q ss_pred ccee-ecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC-chHHHHHHHHHHCCCCCc-eeechhhhhcccccccc
Q 013861 229 HDGI-VREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMD-GRVGAIRAALDAEGFQHV-SIMSYTAKYASSFYGPF 305 (435)
Q Consensus 229 HcGI-v~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMMD-GrVgAIR~aLD~~Gf~~v-~IMSYSaKyASafYGPF 305 (435)
+ |- ...++.+.-|+-.+...+|+-.++++|+|++.=.-|.+ -.+.++.+++.+ +.+. .++|.+.+=..
T Consensus 118 ~-g~~y~~~~~~~~~~~~~~~~~q~~~l~~~gvD~l~~ET~~~~~E~~aa~~a~~~--~~~~p~~is~~~~~~~------ 188 (305)
T PF02574_consen 118 S-GSEYPGDYGLSFEELRDFHREQAEALADAGVDLLLFETMPSLAEAKAALEAIKE--VTGLPVWISFSCKDSG------ 188 (305)
T ss_dssp ------CTTCTT-HHHHHHHHHHHHHHHHHTT-SEEEEEEEC-CSCHHHHHHHHHH--HHHCCSSEEE-EEEEE------
T ss_pred h-hhhccccccccHHHHHHHHHHHHHHHHhcCCCEEEEecCcHHHHHHHHHHHHHh--hhhhhceeccchhhhc------
Confidence 1 11 12234456677788888999999999999999888776 567888888887 2222 23355443110
Q ss_pred hhhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCccc--CCCchHHHHHHHHhhC-CCCeEEEEec
Q 013861 306 REALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVK--PGLPYLDVIRLLRDKY-PLPIAAYQVS 382 (435)
Q Consensus 306 RdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VK--Pal~YLDIIr~vk~~~-~lPvaaYqVS 382 (435)
...|- =++...-+.+.+....+..|+|.+. |. ........|.+++... ++|+.+|=-|
T Consensus 189 --------~l~~g----~~~~~~~~~~~~~~~~~~~~~~~iG-------vNC~~~~~~~~~l~~~~~~~~~~~l~vyPNs 249 (305)
T PF02574_consen 189 --------RLRDG----TSLEDAVQVIDELLRALPPGPDAIG-------VNCTSPPEIMKALLELMSATHDIPLIVYPNS 249 (305)
T ss_dssp --------S-TCT----TBCTTSHHHHHHHHHHHCTT-SEEE-------EESSS-HHHHHHHHHHHHHHT-SEEEEE--S
T ss_pred --------cccCC----CCHHHHHHHHHHHHHHhhhhhheEE-------cCCCCcHHHHhHHHHHHhccCCceEEEecCC
Confidence 01111 1233344455555444578999999 54 2334566666666654 8999999889
Q ss_pred hHHHHHHHHHHCCCCchhhHH----HHHHHHHHHhcccEe
Q 013861 383 GEYSMIKAGGALKMIDEQRVM----MESLMCLRRAGADII 418 (435)
Q Consensus 383 GEYaMikaAa~~G~ide~~~v----~Esl~~ikRAGAd~I 418 (435)
|+--..- ..|......+ .+.+..+.++|+.+|
T Consensus 250 G~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~G~~ii 285 (305)
T PF02574_consen 250 GEPYDVG----KVWSETPEDFAPEWAEFVKEWVEAGARII 285 (305)
T ss_dssp BS-TTSS----GGSTTTTTSHGGG-HHHHHHHHHHHHCEE
T ss_pred CCCcccc----cccccchhhhHHHHHHHHHHHHHhCCEEE
Confidence 9765544 5676543344 348888999999765
No 32
>PRK15063 isocitrate lyase; Provisional
Probab=91.67 E-value=4.1 Score=43.63 Aligned_cols=106 Identities=21% Similarity=0.280 Sum_probs=68.1
Q ss_pred chHHHHHHHHHHCCCCCceeechhhhhcccccccchhhhcCCCCCC--Cccc-cCCCCCCHHHHHHHHHhcccccccEEe
Q 013861 271 GRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFG--DKKT-YQMNPANYREALVEAQADESEGADILL 347 (435)
Q Consensus 271 GrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRdA~~Sap~fg--DRkt-YQmdp~N~~EAlre~~~D~~EGADilM 347 (435)
.||.|+|.+-|..|- ++-|++-+---+..+--.==|--|-..-.| .+.. |+.. ...++||..+..=.+ |||+|.
T Consensus 206 ~kL~AAr~A~d~~g~-~~vIiARTDA~aa~li~s~~d~rD~~fi~g~r~~eg~y~~~-~Gld~AI~Ra~AYa~-GAD~iw 282 (428)
T PRK15063 206 RKLVAARLAADVMGV-PTLVIARTDAEAADLLTSDVDERDRPFITGERTAEGFYRVK-AGIEQAIARGLAYAP-YADLIW 282 (428)
T ss_pred HHHHHHHHHHHhcCC-CeEEEEECCccccccccccccccccccccCCCccccccccc-cCHHHHHHHHHHHhc-CCCEEE
Confidence 467788888888885 577887654332222110000000000012 2223 3333 468999999887655 999999
Q ss_pred cccCCCcccCCCchHHHHHHHHhhCC--CC--eEEEEechHHH
Q 013861 348 FSVLGSQVKPGLPYLDVIRLLRDKYP--LP--IAAYQVSGEYS 386 (435)
Q Consensus 348 ~~~~~~~VKPal~YLDIIr~vk~~~~--lP--vaaYqVSGEYa 386 (435)
+..+.+-++-++++.+... +| +.+|+-|--+.
T Consensus 283 -------~Et~~~d~ee~~~fa~~v~~~~P~~~layn~sPsfn 318 (428)
T PRK15063 283 -------CETSTPDLEEARRFAEAIHAKFPGKLLAYNCSPSFN 318 (428)
T ss_pred -------eCCCCCCHHHHHHHHHhhcccCccceeecCCCCCcc
Confidence 9888999999999998775 48 99998887766
No 33
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=91.48 E-value=2.6 Score=41.46 Aligned_cols=109 Identities=18% Similarity=0.245 Sum_probs=73.8
Q ss_pred cCCCccccHHHHHHHHHHHHHHHH-cCCCeecCCCCC--------CchHHHHHHHHHHCCCCCceeechhhhhccccccc
Q 013861 234 REDGVIMNDETVHQLCKQAVSQAR-AGADVVSPSDMM--------DGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGP 304 (435)
Q Consensus 234 ~e~g~IdND~Tv~~Lak~Avs~A~-AGADiVAPSDMM--------DGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGP 304 (435)
++||.|| .+.++.+.+. +.+ +|+|-|.+.+.+ +=|...++.+.+..+ .+++||.-.
T Consensus 16 ~~dg~iD-~~~~~~li~~---l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~-~~~~viagv---------- 80 (293)
T PRK04147 16 DEDGQID-EQGLRRLVRF---NIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAK-GKVKLIAQV---------- 80 (293)
T ss_pred CCCCCcC-HHHHHHHHHH---HHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhC-CCCCEEecC----------
Confidence 4567876 4455555553 445 999998777643 346666777777665 466776532
Q ss_pred chhhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCch-------HHHHHHHHhhCCCCeE
Q 013861 305 FREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPY-------LDVIRLLRDKYPLPIA 377 (435)
Q Consensus 305 FRdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~Y-------LDIIr~vk~~~~lPva 377 (435)
.-.+.+|+++.++.=.+-|||.+| |=|-..| ++=.+++.+.+++||.
T Consensus 81 -------------------g~~~t~~ai~~a~~a~~~Gad~v~-------v~~P~y~~~~~~~l~~~f~~va~a~~lPv~ 134 (293)
T PRK04147 81 -------------------GSVNTAEAQELAKYATELGYDAIS-------AVTPFYYPFSFEEICDYYREIIDSADNPMI 134 (293)
T ss_pred -------------------CCCCHHHHHHHHHHHHHcCCCEEE-------EeCCcCCCCCHHHHHHHHHHHHHhCCCCEE
Confidence 113788888888887889999999 5554322 3445566778899999
Q ss_pred EEEech
Q 013861 378 AYQVSG 383 (435)
Q Consensus 378 aYqVSG 383 (435)
.||..+
T Consensus 135 iYn~P~ 140 (293)
T PRK04147 135 VYNIPA 140 (293)
T ss_pred EEeCch
Confidence 999643
No 34
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=91.39 E-value=2.6 Score=39.45 Aligned_cols=170 Identities=18% Similarity=0.187 Sum_probs=93.0
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCC
Q 013861 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDG 237 (435)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTshGHcGIv~e~g 237 (435)
.+.+.++.+.+.|+..+.+ . + ...++.+|+.. ++=|+-=++=|.|. .-++- ++
T Consensus 24 ~~~~~a~a~~~~G~~~~~~-~------------------~--~~~i~~i~~~~-~~Pil~~~~~d~~~----~~~~~-~~ 76 (221)
T PRK01130 24 IMAAMALAAVQGGAVGIRA-N------------------G--VEDIKAIRAVV-DVPIIGIIKRDYPD----SEVYI-TP 76 (221)
T ss_pred HHHHHHHHHHHCCCeEEEc-C------------------C--HHHHHHHHHhC-CCCEEEEEecCCCC----CCceE-CC
Confidence 4677777888999876654 1 0 46788887753 32222101111111 01121 11
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCeecCCCCC----C-chHHHHHHHHHHCCCCCceeechhhhhcccccccchhhhcCC
Q 013861 238 VIMNDETVHQLCKQAVSQARAGADVVSPSDMM----D-GRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSN 312 (435)
Q Consensus 238 ~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMM----D-GrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRdA~~Sa 312 (435)
+. +++-...++|||+|.|.--+ + ..+..+.+.+.+. .++.++.-
T Consensus 77 ------~~----~~v~~a~~aGad~I~~d~~~~~~p~~~~~~~~i~~~~~~--~~i~vi~~------------------- 125 (221)
T PRK01130 77 ------TL----KEVDALAAAGADIIALDATLRPRPDGETLAELVKRIKEY--PGQLLMAD------------------- 125 (221)
T ss_pred ------CH----HHHHHHHHcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhC--CCCeEEEe-------------------
Confidence 22 23344467999999874322 1 4555666666663 24444421
Q ss_pred CCCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcc---cCCCchHHHHHHHHhhCCCCeEEEEechHHHHHH
Q 013861 313 PRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQV---KPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIK 389 (435)
Q Consensus 313 p~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~V---KPal~YLDIIr~vk~~~~lPvaaYqVSGEYaMik 389 (435)
..+.+|+.+ =.+.|+|++.++.-|..- .+...-++.++++++.+++||.+ .
T Consensus 126 ------------v~t~ee~~~----a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~~iPvia--~-------- 179 (221)
T PRK01130 126 ------------CSTLEEGLA----AQKLGFDFIGTTLSGYTEETKKPEEPDFALLKELLKAVGCPVIA--E-------- 179 (221)
T ss_pred ------------CCCHHHHHH----HHHcCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhCCCCEEE--E--------
Confidence 125556532 235799999854333221 23344589999999999999885 2
Q ss_pred HHHHCCCCchhhHHHHHHHHHHHhcccEeeh
Q 013861 390 AGGALKMIDEQRVMMESLMCLRRAGADIILT 420 (435)
Q Consensus 390 aAa~~G~ide~~~v~Esl~~ikRAGAd~IiT 420 (435)
|-+... |.+..+..+|||.|+-
T Consensus 180 -----GGI~t~----~~~~~~l~~GadgV~i 201 (221)
T PRK01130 180 -----GRINTP----EQAKKALELGAHAVVV 201 (221)
T ss_pred -----CCCCCH----HHHHHHHHCCCCEEEE
Confidence 223221 3344556679998763
No 35
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=91.26 E-value=7.9 Score=39.60 Aligned_cols=117 Identities=21% Similarity=0.330 Sum_probs=75.5
Q ss_pred HHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCcc
Q 013861 160 VQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVI 239 (435)
Q Consensus 160 ~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTshGHcGIv~e~g~I 239 (435)
.+..+-+-+.|--+||-.-.||.+.+-.-|-.--| + ++-|+.||+.. ++=||.=+- .||
T Consensus 20 ~eqa~iae~aga~avm~le~~p~d~r~~ggv~R~~--~--p~~I~~I~~~V-~iPVig~~k------igh---------- 78 (287)
T TIGR00343 20 PEQAKIAEEAGAVAVMALERVPADIRASGGVARMS--D--PKMIKEIMDAV-SIPVMAKVR------IGH---------- 78 (287)
T ss_pred HHHHHHHHHcCceEEEeeccCchhhHhcCCeeecC--C--HHHHHHHHHhC-CCCEEEEee------ccH----------
Confidence 56777788999999999999997544333322221 1 35799999987 777764332 233
Q ss_pred ccHHHHHHHHHHHHHHHHcCCCeecCCCCCCc---hHHHHHHHHHHCCCCCceeechhhhhcccccccchhhhcCCCCCC
Q 013861 240 MNDETVHQLCKQAVSQARAGADVVSPSDMMDG---RVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFG 316 (435)
Q Consensus 240 dND~Tv~~Lak~Avs~A~AGADiVAPSDMMDG---rVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRdA~~Sap~fg 316 (435)
-+.|-.+.++|+|+|.=|+-.-- .+..+ ++.| ++++|
T Consensus 79 ---------~~Ea~~L~~~GvDiIDeTe~lrPade~~~~~-----K~~f-~vpfm------------------------- 118 (287)
T TIGR00343 79 ---------FVEAQILEALGVDYIDESEVLTPADWTFHID-----KKKF-KVPFV------------------------- 118 (287)
T ss_pred ---------HHHHHHHHHcCCCEEEccCCCCcHHHHHHHH-----HHHc-CCCEE-------------------------
Confidence 56677888999999965544322 11111 1223 34444
Q ss_pred CccccCCCCCCHHHHHHHHHhcccccccEEe
Q 013861 317 DKKTYQMNPANYREALVEAQADESEGADILL 347 (435)
Q Consensus 317 DRktYQmdp~N~~EAlre~~~D~~EGADilM 347 (435)
-|-+|..||+|.. +||||||-
T Consensus 119 ------ad~~~l~EAlrai----~~GadmI~ 139 (287)
T TIGR00343 119 ------CGARDLGEALRRI----NEGAAMIR 139 (287)
T ss_pred ------ccCCCHHHHHHHH----HCCCCEEe
Confidence 2456888888875 68999998
No 36
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=91.02 E-value=4.8 Score=38.74 Aligned_cols=181 Identities=22% Similarity=0.341 Sum_probs=101.3
Q ss_pred CCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCC-CCHHHHHHHHHHHCCCeEEEeeecccCCCC
Q 013861 148 PGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDN-GLVPRTIWLLKDRYPDLVIYTDVALDPYSS 226 (435)
Q Consensus 148 PGv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~-g~v~raIr~iK~~~Pdl~IitDVcLc~YTs 226 (435)
|.+.-..+- .+.++++++.+.|+..+=+ = .-| ..|-|| ++=.+.++.||+.+|++.+ |+-|=+.
T Consensus 11 pSi~~~d~~-~l~~~~~~l~~~~~~~~H~-D-----imD----g~fvpn~~~G~~~v~~lr~~~~~~~l--DvHLm~~-- 75 (228)
T PTZ00170 11 PSILAADFS-KLADEAQDVLSGGADWLHV-D-----VMD----GHFVPNLSFGPPVVKSLRKHLPNTFL--DCHLMVS-- 75 (228)
T ss_pred hhHhhcCHH-HHHHHHHHHHHcCCCEEEE-e-----ccc----CccCCCcCcCHHHHHHHHhcCCCCCE--EEEECCC--
Confidence 444333333 3889999999999998655 1 122 225555 5556899999999888765 6655211
Q ss_pred CCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCC-CchHHHHHHHHHHCCCCCceeechhhhhcccccccc
Q 013861 227 DGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMM-DGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPF 305 (435)
Q Consensus 227 hGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMM-DGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPF 305 (435)
| .+..+ -.++++|||+|.-=-=. +-++..+-+.+.+.|. .++|
T Consensus 76 --------------~---p~~~i---~~~~~~Gad~itvH~ea~~~~~~~~l~~ik~~G~-~~gv--------------- 119 (228)
T PTZ00170 76 --------------N---PEKWV---DDFAKAGASQFTFHIEATEDDPKAVARKIREAGM-KVGV--------------- 119 (228)
T ss_pred --------------C---HHHHH---HHHHHcCCCEEEEeccCCchHHHHHHHHHHHCCC-eEEE---------------
Confidence 1 11222 23557899988532111 1114455555556663 3433
Q ss_pred hhhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCC---ch----HHHHHHHHhhCCCCeEE
Q 013861 306 REALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGL---PY----LDVIRLLRDKYPLPIAA 378 (435)
Q Consensus 306 RdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal---~Y----LDIIr~vk~~~~lPvaa 378 (435)
-++|.-..|-+.+.. + .+..|+|++ + .|.||. .+ ++-|+++|+..+ -..
T Consensus 120 ----------------al~p~t~~e~l~~~l-~-~~~vD~Vl~--m--~v~pG~~gq~~~~~~~~ki~~~~~~~~--~~~ 175 (228)
T PTZ00170 120 ----------------AIKPKTPVEVLFPLI-D-TDLVDMVLV--M--TVEPGFGGQSFMHDMMPKVRELRKRYP--HLN 175 (228)
T ss_pred ----------------EECCCCCHHHHHHHH-c-cchhhhHHh--h--hcccCCCCcEecHHHHHHHHHHHHhcc--cCe
Confidence 123444455555442 1 234555531 1 144542 23 677777777543 122
Q ss_pred EEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEeeh
Q 013861 379 YQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILT 420 (435)
Q Consensus 379 YqVSGEYaMikaAa~~G~ide~~~v~Esl~~ikRAGAd~IiT 420 (435)
-+| .|-+++ |++..++.+|||+++.
T Consensus 176 I~V------------dGGI~~-----~ti~~~~~aGad~iVv 200 (228)
T PTZ00170 176 IQV------------DGGINL-----ETIDIAADAGANVIVA 200 (228)
T ss_pred EEE------------CCCCCH-----HHHHHHHHcCCCEEEE
Confidence 233 455655 5888899999998863
No 37
>PRK07534 methionine synthase I; Validated
Probab=90.53 E-value=8.1 Score=39.58 Aligned_cols=218 Identities=17% Similarity=0.137 Sum_probs=129.3
Q ss_pred hHHHHHHH-HHHcCCCeEEE--eecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCC----CeEEEeeecccCCCCCCcc
Q 013861 158 GLVQEVAK-ARDVGVNSVVL--FPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYP----DLVIYTDVALDPYSSDGHD 230 (435)
Q Consensus 158 ~l~~~v~~-~~~~GI~sv~L--Fgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~P----dl~IitDVcLc~YTshGHc 230 (435)
++++++.+ -++.|-.-+.- |+.-++.++ ..|++ ..-..+..+++++.|+..- +.+|..++ .||...-+
T Consensus 45 e~V~~vH~~Yl~AGAdiI~TnTy~as~~~l~-~~~~~-~~~~~l~~~av~lAr~a~~~~~~~~~VaGsI--GP~g~~l~- 119 (336)
T PRK07534 45 DNITALHQGFVDAGSDIILTNSFGGTAARLK-LHDAQ-DRVHELNRAAAEIAREVADKAGRKVIVAGSV--GPTGEIME- 119 (336)
T ss_pred HHHHHHHHHHHHhcCCEEEecCcccCHHHHH-hcCcH-HHHHHHHHHHHHHHHHHHHhcCCccEEEEec--CCCccccC-
Confidence 46666664 67999765553 442111111 11211 1124567788888887752 46777775 46654332
Q ss_pred eeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC-chHHHHHHHHHHCCCCCcee-echhhhhcccccccchhh
Q 013861 231 GIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMD-GRVGAIRAALDAEGFQHVSI-MSYTAKYASSFYGPFREA 308 (435)
Q Consensus 231 GIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMMD-GrVgAIR~aLD~~Gf~~v~I-MSYSaKyASafYGPFRdA 308 (435)
..|.++-++-++....|+-.+.++|+|++.=--|.+ -.+.++.+++.+.| .++ +|.+. ++
T Consensus 120 ----~~~~~~~~e~~~~~~~qi~~l~~~gvD~l~~ET~p~l~E~~a~~~~~~~~~---~Pv~vSft~----------~~- 181 (336)
T PRK07534 120 ----PMGALTHALAVEAFHEQAEGLKAGGADVLWVETISAPEEIRAAAEAAKLAG---MPWCGTMSF----------DT- 181 (336)
T ss_pred ----CCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEeccCCHHHHHHHHHHHHHcC---CeEEEEEEE----------CC-
Confidence 235566777888888999999999999999998888 45666666776543 333 33322 11
Q ss_pred hcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCC-c--hHHHHHHH-HhhCCCCeEEEEechH
Q 013861 309 LDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGL-P--YLDVIRLL-RDKYPLPIAAYQVSGE 384 (435)
Q Consensus 309 ~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal-~--YLDIIr~v-k~~~~lPvaaYqVSGE 384 (435)
...-++-.+..+++..+. +...++|.+. |-=.. | .+..+.++ +...+.|+.+|==+|+
T Consensus 182 ----------~g~l~~G~~~~~~~~~~~-~~~~~~~avG-------vNC~~gp~~~~~~l~~~~~~~~~~pl~vyPNaG~ 243 (336)
T PRK07534 182 ----------AGRTMMGLTPADLADLVE-KLGEPPLAFG-------ANCGVGASDLLRTVLGFTAQGPERPIIAKGNAGI 243 (336)
T ss_pred ----------CCeeCCCCcHHHHHHHHH-hcCCCceEEE-------ecCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCCC
Confidence 123344445666666653 3444669999 44332 2 23554443 4455789999998888
Q ss_pred HHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEe
Q 013861 385 YSMIKAGGALKMIDEQRVMMESLMCLRRAGADII 418 (435)
Q Consensus 385 YaMikaAa~~G~ide~~~v~Esl~~ikRAGAd~I 418 (435)
-.... ...-|-.....+.|....++.+||.+|
T Consensus 244 p~~~~--~~~~~~~~p~~~~~~~~~~~~~Ga~iI 275 (336)
T PRK07534 244 PKYVD--GHIHYDGTPELMAEYAVLARDAGARII 275 (336)
T ss_pred cccCC--CccccCCCHHHHHHHHHHHHHcCCcEE
Confidence 32211 011111123467777888889999987
No 38
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=90.53 E-value=2.8 Score=42.46 Aligned_cols=124 Identities=19% Similarity=0.247 Sum_probs=80.5
Q ss_pred HHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCC--------CCCch
Q 013861 201 RTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSD--------MMDGR 272 (435)
Q Consensus 201 raIr~iK~~~Pdl~IitDVcLc~YTshGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSD--------MMDGr 272 (435)
..++.|.+.. ++=|++|. ++|+=+... +. +..-.+++|||--|--.| -++|+
T Consensus 67 ~~~~~I~~~~-~lPv~aD~---------------dtGyG~~~~-v~---r~V~~~~~aGaagi~IEDq~~pK~cg~~~~k 126 (294)
T TIGR02319 67 INAKNIVLAV-DVPVIMDA---------------DAGYGNAMS-VW---RATREFERVGIVGYHLEDQVNPKRCGHLEGK 126 (294)
T ss_pred HHHHHHHhcc-CCCEEEEC---------------CCCCCCcHH-HH---HHHHHHHHcCCeEEEEECCCCccccCCCCCc
Confidence 5566666665 56677774 233322222 33 333456788984444433 22343
Q ss_pred --------HHHHHHHHHHCCCCCceeechhhhhcccccccchhhhcCCCCCCCccccCCCCCCHHHHHHHHHhccccccc
Q 013861 273 --------VGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGAD 344 (435)
Q Consensus 273 --------VgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGAD 344 (435)
+..||.+.+...=.++-|++-+--+. ....+|||+.+..=.+-|||
T Consensus 127 ~lv~~ee~~~kI~Aa~~A~~~~d~~I~ARTDa~~--------------------------~~g~deaI~Ra~aY~eAGAD 180 (294)
T TIGR02319 127 RLISTEEMTGKIEAAVEAREDEDFTIIARTDARE--------------------------SFGLDEAIRRSREYVAAGAD 180 (294)
T ss_pred cccCHHHHHHHHHHHHHhccCCCeEEEEEecccc--------------------------cCCHHHHHHHHHHHHHhCCC
Confidence 45666666554325677777643220 01368999999999999999
Q ss_pred EEecccCCCcccCCCchHHHHHHHHhhCCCCeEE
Q 013861 345 ILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAA 378 (435)
Q Consensus 345 ilM~~~~~~~VKPal~YLDIIr~vk~~~~lPvaa 378 (435)
+|+ | |++.-.|-|+++.+..+.|+.+
T Consensus 181 ~if-------i-~~~~~~~ei~~~~~~~~~P~~~ 206 (294)
T TIGR02319 181 CIF-------L-EAMLDVEEMKRVRDEIDAPLLA 206 (294)
T ss_pred EEE-------e-cCCCCHHHHHHHHHhcCCCeeE
Confidence 999 8 8889999999999999999854
No 39
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=90.31 E-value=5.1 Score=40.60 Aligned_cols=168 Identities=25% Similarity=0.307 Sum_probs=101.5
Q ss_pred CCCceeechhhhHHHHHHHHHHcCCCeEEEeec-CCCCCCCcccCcCcCCCCCH-----HHHHHHHHHHCCCeEEEeeec
Q 013861 147 MPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPK-VPDALKSPTGDEAYNDNGLV-----PRTIWLLKDRYPDLVIYTDVA 220 (435)
Q Consensus 147 MPGv~r~s~~~~l~~~v~~~~~~GI~sv~LFgv-i~~~~Kd~~Gs~A~~~~g~v-----~raIr~iK~~~Pdl~IitDVc 220 (435)
+||+ ||. + ...-+.+.|.+++.+=|- +.. ...| +-+-|++ ...++.|.+.. ++=|++|.
T Consensus 21 ~p~~----~Da-~--SAri~e~~Gf~ai~~Sg~~~a~---~~lG---~PD~g~l~~~e~~~~~~~I~~~~-~iPviaD~- 85 (292)
T PRK11320 21 IVGT----INA-Y--HALLAERAGFKAIYLSGGGVAA---ASLG---LPDLGITTLDDVLIDVRRITDAC-DLPLLVDI- 85 (292)
T ss_pred ecCC----CCH-H--HHHHHHHcCCCEEEeCHHHHHh---HhcC---CCCCCCCCHHHHHHHHHHHHhcc-CCCEEEEC-
Confidence 7888 332 1 223345668888877331 110 1111 2222443 35566665554 23466663
Q ss_pred ccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCC--------CCch--------HHHHHHHHHHCC
Q 013861 221 LDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDM--------MDGR--------VGAIRAALDAEG 284 (435)
Q Consensus 221 Lc~YTshGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDM--------MDGr--------VgAIR~aLD~~G 284 (435)
++|+= |-..+.+.+ -.+.++||--|--.|= +.|+ +..||.+++...
T Consensus 86 --------------d~GyG-~~~~v~r~V---~~~~~aGaagi~IEDq~~pK~cg~~~~~~lv~~ee~~~kI~Aa~~a~~ 147 (292)
T PRK11320 86 --------------DTGFG-GAFNIARTV---KSMIKAGAAAVHIEDQVGAKRCGHRPNKEIVSQEEMVDRIKAAVDART 147 (292)
T ss_pred --------------CCCCC-CHHHHHHHH---HHHHHcCCeEEEEecCCCccccCCCCCCcccCHHHHHHHHHHHHHhcc
Confidence 34544 445554444 4567889844444441 2332 566666666543
Q ss_pred CCCceeechhhhhcccccccchhhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHH
Q 013861 285 FQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDV 364 (435)
Q Consensus 285 f~~v~IMSYSaKyASafYGPFRdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDI 364 (435)
=.++-|++-+--|+. ...+|||+.+..=.+-|||+|+ | |++.-+|-
T Consensus 148 ~~d~~IiARTDa~~~--------------------------~g~deAI~Ra~aY~eAGAD~if-------i-~~~~~~~~ 193 (292)
T PRK11320 148 DPDFVIMARTDALAV--------------------------EGLDAAIERAQAYVEAGADMIF-------P-EAMTELEM 193 (292)
T ss_pred CCCeEEEEecCcccc--------------------------cCHHHHHHHHHHHHHcCCCEEE-------e-cCCCCHHH
Confidence 267888876543321 1269999999999999999999 6 67888999
Q ss_pred HHHHHhhCCCCeEEEEe
Q 013861 365 IRLLRDKYPLPIAAYQV 381 (435)
Q Consensus 365 Ir~vk~~~~lPvaaYqV 381 (435)
|+++.+..++|+.+=.+
T Consensus 194 i~~~~~~~~~Pl~~n~~ 210 (292)
T PRK11320 194 YRRFADAVKVPILANIT 210 (292)
T ss_pred HHHHHHhcCCCEEEEec
Confidence 99999999999865333
No 40
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=90.18 E-value=5.6 Score=38.54 Aligned_cols=59 Identities=20% Similarity=0.209 Sum_probs=42.4
Q ss_pred ccccccEEecccCCCcccCCCchHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCc--hhhHHHHHHHHHHHhccc
Q 013861 339 ESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMID--EQRVMMESLMCLRRAGAD 416 (435)
Q Consensus 339 ~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G~id--e~~~v~Esl~~ikRAGAd 416 (435)
.+.|||+|-++. + .=++.++++.+..++||.+ .|.++ ..+-++|.+..+.++||+
T Consensus 166 ~~~GADyikt~~-----~---~~~~~l~~~~~~~~iPVva---------------~GGi~~~~~~~~~~~i~~~~~aGa~ 222 (258)
T TIGR01949 166 AELGADIVKTPY-----T---GDIDSFRDVVKGCPAPVVV---------------AGGPKTNSDREFLQMIKDAMEAGAA 222 (258)
T ss_pred HHHCCCEEeccC-----C---CCHHHHHHHHHhCCCcEEE---------------ecCCCCCCHHHHHHHHHHHHHcCCc
Confidence 368999999541 1 1378899999888999965 24555 334567888888888998
Q ss_pred Eeeh
Q 013861 417 IILT 420 (435)
Q Consensus 417 ~IiT 420 (435)
.|..
T Consensus 223 Gia~ 226 (258)
T TIGR01949 223 GVAV 226 (258)
T ss_pred EEeh
Confidence 7653
No 41
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=90.07 E-value=3.3 Score=41.32 Aligned_cols=166 Identities=22% Similarity=0.284 Sum_probs=107.1
Q ss_pred CC-CceeechhhhHHHHHHHHHH-cCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCC
Q 013861 147 MP-GCYRLGWRHGLVQEVAKARD-VGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPY 224 (435)
Q Consensus 147 MP-Gv~r~s~~~~l~~~v~~~~~-~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~Y 224 (435)
|| |-|..+.. ..++.+.++++ .|...|-|=+ | .-...-|+.+.+. .+-|+.=+-|-|=
T Consensus 83 ~pfg~y~~~~~-~av~~a~r~~~~aGa~aVkiEd----------g-------~~~~~~I~al~~a--gIpV~gHiGL~pq 142 (264)
T PRK00311 83 MPFGSYQASPE-QALRNAGRLMKEAGAHAVKLEG----------G-------EEVAETIKRLVER--GIPVMGHLGLTPQ 142 (264)
T ss_pred CCCCCccCCHH-HHHHHHHHHHHHhCCeEEEEcC----------c-------HHHHHHHHHHHHC--CCCEeeeecccce
Confidence 67 88877775 47777777777 9999988722 1 1344667777765 3446666667777
Q ss_pred CCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCCCceeech-hhhhcccccc
Q 013861 225 SSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSY-TAKYASSFYG 303 (435)
Q Consensus 225 TshGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMMDGrVgAIR~aLD~~Gf~~v~IMSY-SaKyASafYG 303 (435)
|.|--.|..- .| ..|+..+.+.+.|..+.+||||+|-....=.-...+|.+.| ++++.+. |.++++.=.=
T Consensus 143 ~~~~~gg~~i-~g--rt~~~a~~~i~ra~a~~eAGA~~i~lE~v~~~~~~~i~~~l------~iP~igiGaG~~~dgqvl 213 (264)
T PRK00311 143 SVNVLGGYKV-QG--RDEEAAEKLLEDAKALEEAGAFALVLECVPAELAKEITEAL------SIPTIGIGAGPDCDGQVL 213 (264)
T ss_pred eecccCCeee-ec--CCHHHHHHHHHHHHHHHHCCCCEEEEcCCCHHHHHHHHHhC------CCCEEEeccCCCCCceee
Confidence 6654434332 23 35677899999999999999999988877443344444444 4677766 3456666555
Q ss_pred cchhhhcC----CCCCCCccccCCCCCCHHHHHHHHHhcccccc
Q 013861 304 PFREALDS----NPRFGDKKTYQMNPANYREALVEAQADESEGA 343 (435)
Q Consensus 304 PFRdA~~S----ap~fgDRktYQmdp~N~~EAlre~~~D~~EGA 343 (435)
-+-|.++- .|+| -|.|----....+|+++-..|+++|.
T Consensus 214 v~~D~lG~~~~~~pkf--~k~~~~~~~~~~~a~~~y~~~V~~~~ 255 (264)
T PRK00311 214 VWHDMLGLFSGFKPKF--VKRYADLAGSIREAVKAYVAEVKSGS 255 (264)
T ss_pred eHHhhcCCCCCCCCCc--hHhHhhhHHHHHHHHHHHHHHHhCCC
Confidence 56666655 4554 34454333345677777777777663
No 42
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=90.03 E-value=1.3 Score=40.38 Aligned_cols=69 Identities=26% Similarity=0.265 Sum_probs=48.6
Q ss_pred CHHHHHHHHHhcccccccEEecccCC-CcccCCCch---HHHHHHHHhhCC-CCeEEEEechHHHHHHHHHHCCCCchhh
Q 013861 327 NYREALVEAQADESEGADILLFSVLG-SQVKPGLPY---LDVIRLLRDKYP-LPIAAYQVSGEYSMIKAGGALKMIDEQR 401 (435)
Q Consensus 327 N~~EAlre~~~D~~EGADilM~~~~~-~~VKPal~Y---LDIIr~vk~~~~-lPvaaYqVSGEYaMikaAa~~G~ide~~ 401 (435)
|..|+++.. +.|||+|.|+.+. +.-||+... +|.++++++.++ +||.+ .|-++.
T Consensus 113 t~~e~~~a~----~~gaD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~a---------------~GGI~~-- 171 (212)
T PRK00043 113 TLEEAAAAL----AAGADYVGVGPIFPTPTKKDAKAPQGLEGLREIRAAVGDIPIVA---------------IGGITP-- 171 (212)
T ss_pred CHHHHHHHh----HcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEE---------------ECCcCH--
Confidence 555544333 5699999976433 334665444 899999999887 99876 455654
Q ss_pred HHHHHHHHHHHhcccEee
Q 013861 402 VMMESLMCLRRAGADIIL 419 (435)
Q Consensus 402 ~v~Esl~~ikRAGAd~Ii 419 (435)
|.+..+..+|||.|.
T Consensus 172 ---~~i~~~~~~Ga~gv~ 186 (212)
T PRK00043 172 ---ENAPEVLEAGADGVA 186 (212)
T ss_pred ---HHHHHHHHcCCCEEE
Confidence 567788899999987
No 43
>PRK07188 nicotinate phosphoribosyltransferase; Provisional
Probab=89.81 E-value=1.3 Score=45.97 Aligned_cols=70 Identities=27% Similarity=0.445 Sum_probs=51.6
Q ss_pred CHHHHHHHHHHHCCC--eEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHc-CCCe--e---cCCC--
Q 013861 198 LVPRTIWLLKDRYPD--LVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARA-GADV--V---SPSD-- 267 (435)
Q Consensus 198 ~v~raIr~iK~~~Pd--l~IitDVcLc~YTshGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~A-GADi--V---APSD-- 267 (435)
-...|++..++.||+ +++-+|.- || ++ ..|+..|++ |.|+ | +|.|
T Consensus 188 ~~~~A~~a~~~~~Pe~~~ivlVD~~--------------------~d-~~----~~al~~a~~~g~~l~gVRlDs~gdl~ 242 (352)
T PRK07188 188 DVVEACKAYHKTFPEDELIALVDYN--------------------ND-VI----TDSLKVAREFGDKLKGVRVDTSKNMI 242 (352)
T ss_pred cHHHHHHHHHHHCCCCCeEEEEecC--------------------cc-cH----HHHHHHHHHhCCCccEEEeCCcchHh
Confidence 356899999999996 67777721 01 11 456677788 9999 6 4455
Q ss_pred ------------------CCCchHHHHHHHHHHCCCCCceeec
Q 013861 268 ------------------MMDGRVGAIRAALDAEGFQHVSIMS 292 (435)
Q Consensus 268 ------------------MMDGrVgAIR~aLD~~Gf~~v~IMS 292 (435)
|+--.+..+|+.||++||.+|-|+.
T Consensus 243 DK~~~~~~~~~~~~~~~G~~~~l~~~vr~~Ld~~g~~~vkI~a 285 (352)
T PRK07188 243 DKYFIRHPEVLGTFDPRGVNPELIKALRKALDENGGKHVKIIV 285 (352)
T ss_pred hhhcccccccccccccccccHHHHHHHHHHHhhCCCCCcEEEE
Confidence 4556788999999999999998875
No 44
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=89.61 E-value=1.2 Score=44.75 Aligned_cols=103 Identities=20% Similarity=0.335 Sum_probs=68.3
Q ss_pred hcCCC-CCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCc----------hHHHHHHHHhhCCCCeE
Q 013861 309 LDSNP-RFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLP----------YLDVIRLLRDKYPLPIA 377 (435)
Q Consensus 309 ~~Sap-~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~----------YLDIIr~vk~~~~lPva 377 (435)
+.-+| +|-|-..|+ +.++|+.++..-++||||||= +=|.-=+|+.. -+.+|+.+++.+++||.
T Consensus 21 lNvTpDSFsdgg~~~----~~~~a~~~a~~~~~~GAdIID--IGgeSTrPg~~~v~~eeE~~Rv~pvI~~l~~~~~~~IS 94 (282)
T PRK11613 21 LNVTPDSFSDGGTHN----SLIDAVKHANLMINAGATIID--VGGESTRPGAAEVSVEEELDRVIPVVEAIAQRFEVWIS 94 (282)
T ss_pred EcCCCCCCCCCCCCC----CHHHHHHHHHHHHHCCCcEEE--ECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEE
Confidence 44456 477776663 778999999999999999998 11222238876 45688888887788874
Q ss_pred EEEechHHHHHHHHHHCCC--Cch-----hhHHHHHHHHHHHhcccEeehhc
Q 013861 378 AYQVSGEYSMIKAGGALKM--IDE-----QRVMMESLMCLRRAGADIILTYF 422 (435)
Q Consensus 378 aYqVSGEYaMikaAa~~G~--ide-----~~~v~Esl~~ikRAGAd~IiTYf 422 (435)
.= |=....+++|.++|. ||. +.-++|. +++.|+-+||.+.
T Consensus 95 ID--T~~~~va~~AL~~GadiINDI~g~~d~~~~~~---~a~~~~~vVlmh~ 141 (282)
T PRK11613 95 VD--TSKPEVIRESAKAGAHIINDIRSLSEPGALEA---AAETGLPVCLMHM 141 (282)
T ss_pred EE--CCCHHHHHHHHHcCCCEEEECCCCCCHHHHHH---HHHcCCCEEEEcC
Confidence 31 334567777777652 211 2233443 5788999998653
No 45
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=89.56 E-value=20 Score=35.27 Aligned_cols=181 Identities=19% Similarity=0.260 Sum_probs=105.5
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHH-----HH-------------HHHHHHHCCCeEEEeee
Q 013861 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVP-----RT-------------IWLLKDRYPDLVIYTDV 219 (435)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~-----ra-------------Ir~iK~~~Pdl~IitDV 219 (435)
...+.++.+.+.|+.-+-| | +| ..|+.+ ||++. || ++.||+..+++-++
T Consensus 25 ~~~~~~~~l~~~Gad~iEl-G-iP--fsDP~a------DGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~~plv--- 91 (256)
T TIGR00262 25 TSLEIIKTLIEAGADALEL-G-VP--FSDPLA------DGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPNIPIG--- 91 (256)
T ss_pred HHHHHHHHHHHcCCCEEEE-C-CC--CCCCCC------cCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEE---
Confidence 4677888899999998887 7 46 356643 46665 22 45555443443222
Q ss_pred cccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCCCceeechhhhhcc
Q 013861 220 ALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYAS 299 (435)
Q Consensus 220 cLc~YTshGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMMDGrVgAIR~aLD~~Gf~~v~IMSYSaKyAS 299 (435)
+-.| .+ -|. .--++. -.-..+++|+|.|.--|.-.-....+++.++++|+.-+.+++-+
T Consensus 92 -~m~Y--------~N---pi~-~~G~e~---f~~~~~~aGvdgviipDlp~ee~~~~~~~~~~~gl~~i~lv~P~----- 150 (256)
T TIGR00262 92 -LLTY--------YN---LIF-RKGVEE---FYAKCKEVGVDGVLVADLPLEESGDLVEAAKKHGVKPIFLVAPN----- 150 (256)
T ss_pred -EEEe--------cc---HHh-hhhHHH---HHHHHHHcCCCEEEECCCChHHHHHHHHHHHHCCCcEEEEECCC-----
Confidence 1112 11 010 011222 23345899999866667777788888899999998666555432
Q ss_pred cccccchhhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEecccC---CCcccCCCchHHHHHHHHhhCCCCe
Q 013861 300 SFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVL---GSQVKPGLPYLDVIRLLRDKYPLPI 376 (435)
Q Consensus 300 afYGPFRdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~---~~~VKPal~YLDIIr~vk~~~~lPv 376 (435)
-..|-+++... ...|...+| |+. |.+-+-.-.-++.|+++|+.+++||
T Consensus 151 ---------------------------T~~eri~~i~~-~~~gfiy~v-s~~G~TG~~~~~~~~~~~~i~~lr~~~~~pi 201 (256)
T TIGR00262 151 ---------------------------ADDERLKQIAE-KSQGFVYLV-SRAGVTGARNRAASALNELVKRLKAYSAKPV 201 (256)
T ss_pred ---------------------------CCHHHHHHHHH-hCCCCEEEE-ECCCCCCCcccCChhHHHHHHHHHhhcCCCE
Confidence 22333333333 467777877 443 4321122237899999999999997
Q ss_pred EEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEeeh
Q 013861 377 AAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILT 420 (435)
Q Consensus 377 aaYqVSGEYaMikaAa~~G~ide~~~v~Esl~~ikRAGAd~IiT 420 (435)
++ -|-++. -|....+..+|||.+|.
T Consensus 202 ~v---------------gfGI~~----~e~~~~~~~~GADgvVv 226 (256)
T TIGR00262 202 LV---------------GFGISK----PEQVKQAIDAGADGVIV 226 (256)
T ss_pred EE---------------eCCCCC----HHHHHHHHHcCCCEEEE
Confidence 64 122332 23444567778887653
No 46
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=89.54 E-value=13 Score=36.30 Aligned_cols=71 Identities=21% Similarity=0.192 Sum_probs=46.9
Q ss_pred CCCCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCc--hhh
Q 013861 324 NPANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMID--EQR 401 (435)
Q Consensus 324 dp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G~id--e~~ 401 (435)
++....++.+.+. +-|||+|=.+. . .-++.++++.+..++||.+ .|-++ ..+
T Consensus 158 ~~~~i~~a~~~a~---e~GAD~vKt~~-------~-~~~~~l~~~~~~~~ipV~a---------------~GGi~~~~~~ 211 (267)
T PRK07226 158 DPEVVAHAARVAA---ELGADIVKTNY-------T-GDPESFREVVEGCPVPVVI---------------AGGPKTDTDR 211 (267)
T ss_pred cHHHHHHHHHHHH---HHCCCEEeeCC-------C-CCHHHHHHHHHhCCCCEEE---------------EeCCCCCCHH
Confidence 4445555555554 47999987331 1 1268888888878899865 34455 224
Q ss_pred HHHHHHHHHHHhcccEeeh
Q 013861 402 VMMESLMCLRRAGADIILT 420 (435)
Q Consensus 402 ~v~Esl~~ikRAGAd~IiT 420 (435)
-++|.+....+|||+.|..
T Consensus 212 ~~l~~v~~~~~aGA~Gis~ 230 (267)
T PRK07226 212 EFLEMVRDAMEAGAAGVAV 230 (267)
T ss_pred HHHHHHHHHHHcCCcEEeh
Confidence 5678887888899987654
No 47
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=89.54 E-value=4.1 Score=40.47 Aligned_cols=135 Identities=19% Similarity=0.250 Sum_probs=84.5
Q ss_pred HHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHH-cCCCeecCCCCCCchHHHHHH
Q 013861 200 PRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQAR-AGADVVSPSDMMDGRVGAIRA 278 (435)
Q Consensus 200 ~raIr~iK~~~Pdl~IitDVcLc~YTshGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~-AGADiVAPSDMMDGrVgAIR~ 278 (435)
...++.+.+..+.-+|++|. ||.+. -+ |.+...+-++..-+ +||+.|--.|= +-.+..||.
T Consensus 61 ~~~~~~V~r~~~~p~viaD~---~fg~y-----------~~---~~~~av~~a~r~~~~aGa~aVkiEd~-~~~~~~I~a 122 (254)
T cd06557 61 IYHTRAVRRGAPRALVVADM---PFGSY-----------QT---SPEQALRNAARLMKEAGADAVKLEGG-AEVAETIRA 122 (254)
T ss_pred HHHHHHHHhcCCCCeEEEeC---CCCcc-----------cC---CHHHHHHHHHHHHHHhCCeEEEEcCc-HHHHHHHHH
Confidence 35666777777877788999 65222 11 12333444444444 99999988773 124555554
Q ss_pred HHHHCCC---CCceeechhhhhcccccccchhhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcc
Q 013861 279 ALDAEGF---QHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQV 355 (435)
Q Consensus 279 aLD~~Gf---~~v~IMSYSaKyASafYGPFRdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~V 355 (435)
+- ++|. .|++++.-+..+-.-|...=|... ..+++++.+..=.+-|||+|. +
T Consensus 123 l~-~agipV~gHiGL~pq~~~~~gg~~~~grt~~-----------------~a~~~i~ra~a~~~AGA~~i~-------l 177 (254)
T cd06557 123 LV-DAGIPVMGHIGLTPQSVNQLGGYKVQGKTEE-----------------EAERLLEDALALEEAGAFALV-------L 177 (254)
T ss_pred HH-HcCCCeeccccccceeeeccCCceeccCCHH-----------------HHHHHHHHHHHHHHCCCCEEE-------E
Confidence 44 5663 456666665544322221111111 147888888888889999998 4
Q ss_pred cCCCchHHHHHHHHhhCCCCeEEE
Q 013861 356 KPGLPYLDVIRLLRDKYPLPIAAY 379 (435)
Q Consensus 356 KPal~YLDIIr~vk~~~~lPvaaY 379 (435)
|+.+ -++++++.++.++|+...
T Consensus 178 -E~v~-~~~~~~i~~~v~iP~igi 199 (254)
T cd06557 178 -ECVP-AELAKEITEALSIPTIGI 199 (254)
T ss_pred -cCCC-HHHHHHHHHhCCCCEEEe
Confidence 5556 489999999999999754
No 48
>cd08601 GDPD_SaGlpQ_like Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) from Staphylococcus aureus, Bacillus subtilis and similar proteins. Members in this family show very high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=88.77 E-value=2.7 Score=40.04 Aligned_cols=121 Identities=20% Similarity=0.145 Sum_probs=72.2
Q ss_pred CchHHHHHHHHHHCCCC-------CceeechhhhhcccccccchhhhcCCCCCCCccccCCCCCCH----HHHHHHHHhc
Q 013861 270 DGRVGAIRAALDAEGFQ-------HVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANY----REALVEAQAD 338 (435)
Q Consensus 270 DGrVgAIR~aLD~~Gf~-------~v~IMSYSaKyASafYGPFRdA~~Sap~fgDRktYQmdp~N~----~EAlre~~~D 338 (435)
.+-+..+.+.|++.|+. +|.|.|+....-- .+|+.. |.+ +..|.+...+. ++.+..+
T Consensus 125 ~~~~~~v~~~l~~~~~~~~~~~~~~v~i~Sf~~~~l~----~~~~~~---p~~--~~~~l~~~~~~~~~~~~~~~~~--- 192 (256)
T cd08601 125 PGMEEKLLATLDKYGLLTDNLKNGQVIIQSFSKESLK----KLHQLN---PNI--PLVQLLWYGEGAETYDKWLDEI--- 192 (256)
T ss_pred CCHHHHHHHHHHHcCCCcccCCCCCEEEecCCHHHHH----HHHHhC---CCC--cEEEEeccCcccccchhHHHHH---
Confidence 35566778888888874 5777776554221 133322 221 23344433322 2333333
Q ss_pred ccccccEEecccCCCcccCCCchHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEe
Q 013861 339 ESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADII 418 (435)
Q Consensus 339 ~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G~ide~~~v~Esl~~ikRAGAd~I 418 (435)
..+++.+- +.-....-+++..+++. +++|.+|-|- . .|.+..+.+.|+|.|
T Consensus 193 -~~~~~~~~-------~~~~~~~~~~v~~~~~~-g~~v~~wTvn----------------~----~~~~~~l~~~Gvd~I 243 (256)
T cd08601 193 -KEYAIGIG-------PSIADADPWMVHLIHKK-GLLVHPYTVN----------------E----KADMIRLINWGVDGM 243 (256)
T ss_pred -HhcCeEeC-------CchhhcCHHHHHHHHHC-CCEEEEEecC----------------C----HHHHHHHHhcCCCEE
Confidence 33666555 32223345778888774 8999999883 2 345566777899999
Q ss_pred ehhcHHHHHHHHh
Q 013861 419 LTYFALQAARCLC 431 (435)
Q Consensus 419 iTYfA~~~a~~L~ 431 (435)
||-+...+.++|+
T Consensus 244 iTD~p~~~~~~~~ 256 (256)
T cd08601 244 FTNYPDRLKEVLK 256 (256)
T ss_pred EeCCHHHHHHhhC
Confidence 9999888777663
No 49
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=88.71 E-value=3 Score=41.01 Aligned_cols=100 Identities=22% Similarity=0.307 Sum_probs=67.3
Q ss_pred CCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCC-CcccCCCc----------hHHHHHHHHhhCCCCeEEEEec
Q 013861 314 RFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLG-SQVKPGLP----------YLDVIRLLRDKYPLPIAAYQVS 382 (435)
Q Consensus 314 ~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~-~~VKPal~----------YLDIIr~vk~~~~lPvaaYqVS 382 (435)
+|-|...| .+..+|+..+..-+++|||+|= +| .--.|+.. -..+|+.+++.+++||..= |
T Consensus 13 SF~dg~~~----~~~~~~~~~a~~~~~~GAdiID---IG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~~~plSID--T 83 (257)
T cd00739 13 SFSDGGRF----LSLDKAVAHAEKMIAEGADIID---IGGESTRPGADPVSVEEELERVIPVLEALRGELDVLISVD--T 83 (257)
T ss_pred CCCCCCCC----CCHHHHHHHHHHHHHCCCCEEE---ECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCcEEEe--C
Confidence 46554444 3679999999999999999998 11 11156655 4557888888889998532 4
Q ss_pred hHHHHHHHHHHCC--CCch---hhHHHHHHHHHHHhcccEeehhc
Q 013861 383 GEYSMIKAGGALK--MIDE---QRVMMESLMCLRRAGADIILTYF 422 (435)
Q Consensus 383 GEYaMikaAa~~G--~ide---~~~v~Esl~~ikRAGAd~IiTYf 422 (435)
-.+..+++|.+.| ||+- .+.=-|.+.-+++.||.+|+.+.
T Consensus 84 ~~~~v~e~al~~G~~iINdisg~~~~~~~~~l~~~~~~~vV~m~~ 128 (257)
T cd00739 84 FRAEVARAALEAGADIINDVSGGSDDPAMLEVAAEYGAPLVLMHM 128 (257)
T ss_pred CCHHHHHHHHHhCCCEEEeCCCCCCChHHHHHHHHcCCCEEEECC
Confidence 5667788888777 3431 10002344557788999999765
No 50
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=88.69 E-value=4.5 Score=39.03 Aligned_cols=109 Identities=26% Similarity=0.344 Sum_probs=70.3
Q ss_pred cCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCC--------CCchHHHHHHHHHHCCCCCceeechhhhhcccccccc
Q 013861 234 REDGVIMNDETVHQLCKQAVSQARAGADVVSPSDM--------MDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPF 305 (435)
Q Consensus 234 ~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDM--------MDGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPF 305 (435)
++||.||=| .++.+.+. +.+.|+|-|.+.+. .+=|..-++.+.+..+ .+++|+.-..
T Consensus 10 ~~dg~iD~~-~~~~~i~~---l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~-~~~~vi~gv~---------- 74 (281)
T cd00408 10 TADGEVDLD-ALRRLVEF---LIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVA-GRVPVIAGVG---------- 74 (281)
T ss_pred CCCCCcCHH-HHHHHHHH---HHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhC-CCCeEEEecC----------
Confidence 455677643 44444443 44569999988775 3456677777777665 4677665431
Q ss_pred hhhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCch-------HHHHHHHHhhCCCCeEE
Q 013861 306 REALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPY-------LDVIRLLRDKYPLPIAA 378 (435)
Q Consensus 306 RdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~Y-------LDIIr~vk~~~~lPvaa 378 (435)
..+.+|+++.++.=.+-|||.+| |=|-..| ++-.+.+.+.+++|+.-
T Consensus 75 -------------------~~~~~~~i~~a~~a~~~Gad~v~-------v~pP~y~~~~~~~~~~~~~~ia~~~~~pi~i 128 (281)
T cd00408 75 -------------------ANSTREAIELARHAEEAGADGVL-------VVPPYYNKPSQEGIVAHFKAVADASDLPVIL 128 (281)
T ss_pred -------------------CccHHHHHHHHHHHHHcCCCEEE-------ECCCcCCCCCHHHHHHHHHHHHhcCCCCEEE
Confidence 12356777777666667999999 6554322 44555677778999999
Q ss_pred EEech
Q 013861 379 YQVSG 383 (435)
Q Consensus 379 YqVSG 383 (435)
||.-+
T Consensus 129 Yn~P~ 133 (281)
T cd00408 129 YNIPG 133 (281)
T ss_pred EECcc
Confidence 98754
No 51
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=88.66 E-value=8.1 Score=37.46 Aligned_cols=145 Identities=23% Similarity=0.292 Sum_probs=80.6
Q ss_pred HHHHHHHHCCCeEEEeeecccCCCCCCcceeecC---CCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCch---HHH
Q 013861 202 TIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVRE---DGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGR---VGA 275 (435)
Q Consensus 202 aIr~iK~~~Pdl~IitDVcLc~YTshGHcGIv~e---~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMMDGr---VgA 275 (435)
=|+.||+.. ||=|| ||+.. |..|--=.|++ .+...+++||||||-..-.--| +..
T Consensus 23 dI~aik~~v-~lPII--------------Gi~K~~y~~~~V~ITPT~~----ev~~l~~aGadIIAlDaT~R~Rp~~l~~ 83 (192)
T PF04131_consen 23 DIRAIKKAV-DLPII--------------GIIKRDYPDSDVYITPTLK----EVDALAEAGADIIALDATDRPRPETLEE 83 (192)
T ss_dssp HHHHHHTTB--S-EE--------------EE-B-SBTTSS--BS-SHH----HHHHHHHCT-SEEEEE-SSSS-SS-HHH
T ss_pred HHHHHHHhc-CCCEE--------------EEEeccCCCCCeEECCCHH----HHHHHHHcCCCEEEEecCCCCCCcCHHH
Confidence 478888876 66665 44431 22333345554 4567789999999954443333 222
Q ss_pred HHHHHHHCCCCCceeechhhhhcccccccchhhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCC--C
Q 013861 276 IRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLG--S 353 (435)
Q Consensus 276 IR~aLD~~Gf~~v~IMSYSaKyASafYGPFRdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~--~ 353 (435)
+=+...+++ +.+|+ |-++.+|++...++ |+|+|=-..-| .
T Consensus 84 li~~i~~~~---~l~MA-------------------------------Dist~ee~~~A~~~----G~D~I~TTLsGYT~ 125 (192)
T PF04131_consen 84 LIREIKEKY---QLVMA-------------------------------DISTLEEAINAAEL----GFDIIGTTLSGYTP 125 (192)
T ss_dssp HHHHHHHCT---SEEEE-------------------------------E-SSHHHHHHHHHT----T-SEEE-TTTTSST
T ss_pred HHHHHHHhC---cEEee-------------------------------ecCCHHHHHHHHHc----CCCEEEcccccCCC
Confidence 222333332 55553 45578898888766 99999744333 3
Q ss_pred cccCCCchHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEeehhcH
Q 013861 354 QVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTYFA 423 (435)
Q Consensus 354 ~VKPal~YLDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G~ide~~~v~Esl~~ikRAGAd~IiTYfA 423 (435)
..+...|=+++|+++++. ++||.| .|-++.. |......++||+.++---|
T Consensus 126 ~t~~~~pD~~lv~~l~~~-~~pvIa---------------EGri~tp----e~a~~al~~GA~aVVVGsA 175 (192)
T PF04131_consen 126 YTKGDGPDFELVRELVQA-DVPVIA---------------EGRIHTP----EQAAKALELGAHAVVVGSA 175 (192)
T ss_dssp TSTTSSHHHHHHHHHHHT-TSEEEE---------------ESS--SH----HHHHHHHHTT-SEEEE-HH
T ss_pred CCCCCCCCHHHHHHHHhC-CCcEee---------------cCCCCCH----HHHHHHHhcCCeEEEECcc
Confidence 445577889999999986 899765 3444443 3334456779998875444
No 52
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=88.52 E-value=4.5 Score=39.75 Aligned_cols=118 Identities=18% Similarity=0.238 Sum_probs=75.5
Q ss_pred cCCCccccHHHHHHHHHHHHHHHHc-CCCeecCCCCC--------CchHHHHHHHHHHCCCCCceeechhhhhccccccc
Q 013861 234 REDGVIMNDETVHQLCKQAVSQARA-GADVVSPSDMM--------DGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGP 304 (435)
Q Consensus 234 ~e~g~IdND~Tv~~Lak~Avs~A~A-GADiVAPSDMM--------DGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGP 304 (435)
++||.|| .+.++.+.+-.+. + |+|-|.+...+ +=|...+|.+.+..+ .+++||.=.
T Consensus 13 ~~dg~iD-~~~~~~~i~~l~~---~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~-~~~~viagv---------- 77 (288)
T cd00954 13 DENGEIN-EDVLRAIVDYLIE---KQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAK-GKVTLIAHV---------- 77 (288)
T ss_pred CCCCCCC-HHHHHHHHHHHHh---cCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhC-CCCeEEecc----------
Confidence 3456775 5566666665444 6 99999877653 235666666666654 255555432
Q ss_pred chhhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCch-------HHHHHHHHhhC-CCCe
Q 013861 305 FREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPY-------LDVIRLLRDKY-PLPI 376 (435)
Q Consensus 305 FRdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~Y-------LDIIr~vk~~~-~lPv 376 (435)
.-.|.+|+++.++.=.+-|||.+| |=|-..| .|-.+.+.+.+ ++||
T Consensus 78 -------------------~~~~~~~ai~~a~~a~~~Gad~v~-------~~~P~y~~~~~~~i~~~~~~v~~a~~~lpi 131 (288)
T cd00954 78 -------------------GSLNLKESQELAKHAEELGYDAIS-------AITPFYYKFSFEEIKDYYREIIAAAASLPM 131 (288)
T ss_pred -------------------CCCCHHHHHHHHHHHHHcCCCEEE-------EeCCCCCCCCHHHHHHHHHHHHHhcCCCCE
Confidence 123788888888777789999999 5443221 34445666778 8999
Q ss_pred EEEEe---ch---HHHHHHHHH
Q 013861 377 AAYQV---SG---EYSMIKAGG 392 (435)
Q Consensus 377 aaYqV---SG---EYaMikaAa 392 (435)
..||. +| ...+++.-+
T Consensus 132 ~iYn~P~~tg~~l~~~~~~~L~ 153 (288)
T cd00954 132 IIYHIPALTGVNLTLEQFLELF 153 (288)
T ss_pred EEEeCccccCCCCCHHHHHHHh
Confidence 99985 45 555666544
No 53
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=88.36 E-value=27 Score=34.34 Aligned_cols=41 Identities=20% Similarity=0.263 Sum_probs=28.4
Q ss_pred hHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEeeh
Q 013861 361 YLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILT 420 (435)
Q Consensus 361 YLDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G~ide~~~v~Esl~~ikRAGAd~IiT 420 (435)
.++.++++++.+++||.+ .|-+..-+-+.|.| .+|||+|--
T Consensus 222 ~l~~v~~i~~~~~ipvi~---------------~GGI~~~~da~~~l----~aGAd~V~i 262 (301)
T PRK07259 222 ALRMVYQVYQAVDIPIIG---------------MGGISSAEDAIEFI----MAGASAVQV 262 (301)
T ss_pred cHHHHHHHHHhCCCCEEE---------------ECCCCCHHHHHHHH----HcCCCceeE
Confidence 689999999999999886 33343333445544 478988753
No 54
>PRK08444 hypothetical protein; Provisional
Probab=87.93 E-value=1 Score=46.36 Aligned_cols=223 Identities=14% Similarity=0.184 Sum_probs=122.8
Q ss_pred CceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCC
Q 013861 149 GCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDG 228 (435)
Q Consensus 149 Gv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTshG 228 (435)
.-|.++.+ .+++.++++.+.|++.|.|-+-..+. .+-..+..+++.||+.+|++-| |.||..=
T Consensus 76 ~~y~ls~e-eI~~~a~~a~~~G~~ei~iv~G~~p~----------~~~e~y~e~ir~Ik~~~p~i~i------~a~s~~E 138 (353)
T PRK08444 76 NPYTMSHE-EILEIVKNSVKRGIKEVHIVSAHNPN----------YGYEWYLEIFKKIKEAYPNLHV------KAMTAAE 138 (353)
T ss_pred ccccCCHH-HHHHHHHHHHHCCCCEEEEeccCCCC----------CCHHHHHHHHHHHHHHCCCceE------eeCCHHH
Confidence 44889986 69999999999999999885421111 1223578999999999998765 2222110
Q ss_pred cceeecCCCccccHHHHHHHHHHHHH-HHHcCCCee--------cCCCCCCchHHHHHHHHHHCCCCCceeechhhhhcc
Q 013861 229 HDGIVREDGVIMNDETVHQLCKQAVS-QARAGADVV--------SPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYAS 299 (435)
Q Consensus 229 HcGIv~e~g~IdND~Tv~~Lak~Avs-~A~AGADiV--------APSDMMDGrVgAIR~aLD~~Gf~~v~IMSYSaKyAS 299 (435)
=.- +.+.--+..++++++|-+.-+. +--.||.+. +|.-.-.=|.-.|.+...+.|+.-++ .
T Consensus 139 i~~-~a~~~g~~~~e~l~~LkeAGl~~~~g~~aEi~~~~vr~~I~p~k~~~~~~~~i~~~a~~~Gi~~~s---------g 208 (353)
T PRK08444 139 VDF-LSRKFGKSYEEVLEDMLEYGVDSMPGGGAEIFDEEVRKKICKGKVSSERWLEIHKYWHKKGKMSNA---------T 208 (353)
T ss_pred HHH-HHHHcCCCHHHHHHHHHHhCcccCCCCCchhcCHHHHhhhCCCCCCHHHHHHHHHHHHHcCCCccc---------e
Confidence 000 0001123457788887776552 222345554 89888877777887777788984332 2
Q ss_pred cccccchhhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEecccC-----CCcc--cCCCchHHHHH---HHH
Q 013861 300 SFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVL-----GSQV--KPGLPYLDVIR---LLR 369 (435)
Q Consensus 300 afYGPFRdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~-----~~~V--KPal~YLDIIr---~vk 369 (435)
-.|| .+.++. || ..--+.||+.+.| .-|--.++ .+ |... .|..+-.|.++ -.|
T Consensus 209 ~l~G-----~gEt~e--dr-------v~hl~~Lr~Lq~~-t~gf~~fI--p~~f~~~~t~l~~~~~~~~~e~Lr~iAi~R 271 (353)
T PRK08444 209 MLFG-----HIENRE--HR-------IDHMLRLRDLQDK-TGGFNAFI--PLVYQRENNYLKVEKFPSSQEILKTIAISR 271 (353)
T ss_pred eEEe-----cCCCHH--HH-------HHHHHHHHHhccc-cCCceEEE--ecccCCCCCcCCCCCCCCHHHHHHHHHHHH
Confidence 2455 333222 22 1223344444332 12333232 21 1111 22233334333 333
Q ss_pred ---hhCCCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccE
Q 013861 370 ---DKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADI 417 (435)
Q Consensus 370 ---~~~~lPvaaYqVSGEYaMikaAa~~G~ide~~~v~Esl~~ikRAGAd~ 417 (435)
++++- +=||-|.---.+.+.|...|.=|..-+++|- .-..-|||.-
T Consensus 272 l~L~~i~n-i~a~w~~~g~~~~q~~L~~Ga~D~ggt~~~e-~i~~~ag~~~ 320 (353)
T PRK08444 272 ILLDNIPH-IKAYWATLTLNLALVAQEFGANDLDGTIEKE-SIQSAAGAKS 320 (353)
T ss_pred HhcCCCCc-cccccccCcHHHHHHHHhcCCccCccccccc-cchhhccCCC
Confidence 33321 3367666666787888888887777666554 2345677643
No 55
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=87.93 E-value=4.9 Score=40.20 Aligned_cols=174 Identities=18% Similarity=0.295 Sum_probs=97.0
Q ss_pred CCCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCccc--CcCcCCCCC-----HHHHHHHHHHHCCCeEEEee
Q 013861 146 AMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTG--DEAYNDNGL-----VPRTIWLLKDRYPDLVIYTD 218 (435)
Q Consensus 146 sMPGv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~G--s~A~~~~g~-----v~raIr~iK~~~Pdl~IitD 218 (435)
.||++|=+.. .+-+-+.|+..++. | ++ .+ ...+.+-++ +...++.+.+..+.-.|++|
T Consensus 18 ~~~tayD~~s-------Arl~e~aG~d~i~v-G---ds----~~~~~lG~~Dt~~vtl~em~~h~~~V~r~~~~p~vvaD 82 (264)
T PRK00311 18 VMLTAYDYPF-------AKLFDEAGVDVILV-G---DS----LGMVVLGYDSTLPVTLDDMIYHTKAVARGAPRALVVAD 82 (264)
T ss_pred EEEeCCCHHH-------HHHHHHcCCCEEEE-C---HH----HHHHHcCCCCCCCcCHHHHHHHHHHHHhcCCCCcEEEe
Confidence 6888865443 22234559988864 4 11 11 011222222 23556666777777678899
Q ss_pred ecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHH-cCCCeecCCCCCCchHHHHHHHHHHCCC---CCceeechh
Q 013861 219 VALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQAR-AGADVVSPSDMMDGRVGAIRAALDAEGF---QHVSIMSYT 294 (435)
Q Consensus 219 VcLc~YTshGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~-AGADiVAPSDMMDGrVgAIR~aLD~~Gf---~~v~IMSYS 294 (435)
. ||.+. ..|.+...+.++..-+ +||+.|--.|= +-.+..||.+- ++|. -|++++.=+
T Consensus 83 ~---pfg~y--------------~~~~~~av~~a~r~~~~aGa~aVkiEdg-~~~~~~I~al~-~agIpV~gHiGL~pq~ 143 (264)
T PRK00311 83 M---PFGSY--------------QASPEQALRNAGRLMKEAGAHAVKLEGG-EEVAETIKRLV-ERGIPVMGHLGLTPQS 143 (264)
T ss_pred C---CCCCc--------------cCCHHHHHHHHHHHHHHhCCeEEEEcCc-HHHHHHHHHHH-HCCCCEeeeeccccee
Confidence 9 66211 1223333344444444 99999988773 11344455443 4552 233344333
Q ss_pred hhhcccccccchhhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhCCC
Q 013861 295 AKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPL 374 (435)
Q Consensus 295 aKyASafYGPFRdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~~l 374 (435)
...- |-|+- . | | +....+|+++.+..=.+-|||+|. + |+.+- ++++++.++.++
T Consensus 144 ~~~~----gg~~i-~------g-r-----t~~~a~~~i~ra~a~~eAGA~~i~-------l-E~v~~-~~~~~i~~~l~i 197 (264)
T PRK00311 144 VNVL----GGYKV-Q------G-R-----DEEAAEKLLEDAKALEEAGAFALV-------L-ECVPA-ELAKEITEALSI 197 (264)
T ss_pred eccc----CCeee-e------c-C-----CHHHHHHHHHHHHHHHHCCCCEEE-------E-cCCCH-HHHHHHHHhCCC
Confidence 3211 22221 1 0 0 001147888888888889999998 4 45555 899999999999
Q ss_pred CeEEE
Q 013861 375 PIAAY 379 (435)
Q Consensus 375 PvaaY 379 (435)
|+...
T Consensus 198 P~igi 202 (264)
T PRK00311 198 PTIGI 202 (264)
T ss_pred CEEEe
Confidence 99754
No 56
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=87.83 E-value=25 Score=33.20 Aligned_cols=70 Identities=24% Similarity=0.309 Sum_probs=46.6
Q ss_pred HHHHHHHHHhcccccccEEecccCCC-cccCCCchHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhhHHHHH
Q 013861 328 YREALVEAQADESEGADILLFSVLGS-QVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMES 406 (435)
Q Consensus 328 ~~EAlre~~~D~~EGADilM~~~~~~-~VKPal~YLDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G~ide~~~v~Es 406 (435)
..|..++.. +.|+|.|.++-... +-+++ +.+++++++++..++||.+ .|.+.. .|-
T Consensus 155 ~~~~~~~~~---~~G~d~i~i~~i~~~g~~~g-~~~~~~~~i~~~~~ipvia---------------~GGi~s----~~d 211 (232)
T TIGR03572 155 PVEWAREAE---QLGAGEILLNSIDRDGTMKG-YDLELIKTVSDAVSIPVIA---------------LGGAGS----LDD 211 (232)
T ss_pred HHHHHHHHH---HcCCCEEEEeCCCccCCcCC-CCHHHHHHHHhhCCCCEEE---------------ECCCCC----HHH
Confidence 344444442 57999888655333 22444 6899999999999999876 455543 233
Q ss_pred HHH-HHHhcccEeeh
Q 013861 407 LMC-LRRAGADIILT 420 (435)
Q Consensus 407 l~~-ikRAGAd~IiT 420 (435)
+.. ++++|||.|+-
T Consensus 212 i~~~l~~~gadgV~v 226 (232)
T TIGR03572 212 LVEVALEAGASAVAA 226 (232)
T ss_pred HHHHHHHcCCCEEEE
Confidence 334 77889998874
No 57
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=87.64 E-value=24 Score=33.22 Aligned_cols=182 Identities=18% Similarity=0.175 Sum_probs=99.2
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCC
Q 013861 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDG 237 (435)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTshGHcGIv~e~g 237 (435)
++.+.++++.+.|..+|.+-+ |.+..+-+.++.. +.+++-.+.+- ..| ..
T Consensus 22 d~~~~~~~~~~~g~~av~v~~------------------~~~~~~~~~~~~~-~~~i~~~~~~~----~i~---~p---- 71 (235)
T cd00958 22 DPEETVKLAAEGGADAVALTK------------------GIARAYGREYAGD-IPLIVKLNGST----SLS---PK---- 71 (235)
T ss_pred CHHHHHHHHHhcCCCEEEeCh------------------HHHHhcccccCCC-CcEEEEECCCC----CCC---CC----
Confidence 589999999999999988843 3344443333211 12343344321 111 00
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCee---cCCCCCC-----chHHHHHHHHHHCCCCCceeechhhhhcccccccchhhh
Q 013861 238 VIMNDETVHQLCKQAVSQARAGADVV---SPSDMMD-----GRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREAL 309 (435)
Q Consensus 238 ~IdND~Tv~~Lak~Avs~A~AGADiV---APSDMMD-----GrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRdA~ 309 (435)
..+.+.+..+.-...++|||.| ..-...+ =.+.+++++-++.|. .+-|-.|. +|
T Consensus 72 ----~~~~~~~~~~v~~a~~~Ga~~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~g~-~~iie~~~-------~g------ 133 (235)
T cd00958 72 ----DDNDKVLVASVEDAVRLGADAVGVTVYVGSEEEREMLEELARVAAEAHKYGL-PLIAWMYP-------RG------ 133 (235)
T ss_pred ----CCCchhhhcCHHHHHHCCCCEEEEEEecCCchHHHHHHHHHHHHHHHHHcCC-CEEEEEec-------cC------
Confidence 1112233333334568899865 2211111 167777777666665 34442332 22
Q ss_pred cCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhCCCCeEEEEechHHHHHH
Q 013861 310 DSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIK 389 (435)
Q Consensus 310 ~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~~lPvaaYqVSGEYaMik 389 (435)
...++ .+++...+++.+.+. +.|||+|- +.+. .=++.++++.+..++||.+ +
T Consensus 134 ---~~~~~----~~~~~~i~~~~~~a~---~~GaD~Ik-------~~~~-~~~~~~~~i~~~~~~pvv~---~------- 185 (235)
T cd00958 134 ---PAVKN----EKDPDLIAYAARIGA---ELGADIVK-------TKYT-GDAESFKEVVEGCPVPVVI---A------- 185 (235)
T ss_pred ---CcccC----ccCHHHHHHHHHHHH---HHCCCEEE-------ecCC-CCHHHHHHHHhcCCCCEEE---e-------
Confidence 12232 133333333333333 57999999 4321 1378999999999999732 2
Q ss_pred HHHHCCCC--chhhHHHHHHHHHHHhcccEeeh
Q 013861 390 AGGALKMI--DEQRVMMESLMCLRRAGADIILT 420 (435)
Q Consensus 390 aAa~~G~i--de~~~v~Esl~~ikRAGAd~IiT 420 (435)
|.+ +..+-.+|.+..+.++||+.|..
T Consensus 186 -----GG~~~~~~~~~l~~~~~~~~~Ga~gv~v 213 (235)
T cd00958 186 -----GGPKKDSEEEFLKMVYDAMEAGAAGVAV 213 (235)
T ss_pred -----CCCCCCCHHHHHHHHHHHHHcCCcEEEe
Confidence 222 22234588888899999998753
No 58
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=87.52 E-value=5.8 Score=39.44 Aligned_cols=173 Identities=22% Similarity=0.260 Sum_probs=113.7
Q ss_pred eEEEeeCCCCcccCCCC-CceeechhhhHHHHHHHHHH-cCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHH
Q 013861 132 PLFIHEGEEDTPIGAMP-GCYRLGWRHGLVQEVAKARD-VGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDR 209 (435)
Q Consensus 132 PlFV~eg~~~~~I~sMP-Gv~r~s~~~~l~~~v~~~~~-~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~ 209 (435)
|+.|.| || |-|.-+.+ ..++.+.++++ .|...|-|=+ | .-....|+.+.++
T Consensus 74 p~viaD---------~~fg~y~~~~~-~av~~a~r~~~~aGa~aVkiEd----------~-------~~~~~~I~al~~a 126 (254)
T cd06557 74 ALVVAD---------MPFGSYQTSPE-QALRNAARLMKEAGADAVKLEG----------G-------AEVAETIRALVDA 126 (254)
T ss_pred CeEEEe---------CCCCcccCCHH-HHHHHHHHHHHHhCCeEEEEcC----------c-------HHHHHHHHHHHHc
Confidence 666665 77 77887775 58888888777 9999988722 1 1456677777765
Q ss_pred CCCeEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCCCce
Q 013861 210 YPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVS 289 (435)
Q Consensus 210 ~Pdl~IitDVcLc~YTshGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMMDGrVgAIR~aLD~~Gf~~v~ 289 (435)
- +=|+..+-|-|=|.+--.|..- .| ..|+..+.+.+.|..+.+||||+|-....=.--...|.+.| +++
T Consensus 127 g--ipV~gHiGL~pq~~~~~gg~~~-~g--rt~~~a~~~i~ra~a~~~AGA~~i~lE~v~~~~~~~i~~~v------~iP 195 (254)
T cd06557 127 G--IPVMGHIGLTPQSVNQLGGYKV-QG--KTEEEAERLLEDALALEEAGAFALVLECVPAELAKEITEAL------SIP 195 (254)
T ss_pred C--CCeeccccccceeeeccCCcee-cc--CCHHHHHHHHHHHHHHHHCCCCEEEEcCCCHHHHHHHHHhC------CCC
Confidence 3 4467777777776664444432 13 35677899999999999999999988777433334444443 466
Q ss_pred eechh-hhhcccccccchhhhcCCCCCC--CccccCCCCCCHHHHHHHHHhccccc
Q 013861 290 IMSYT-AKYASSFYGPFREALDSNPRFG--DKKTYQMNPANYREALVEAQADESEG 342 (435)
Q Consensus 290 IMSYS-aKyASafYGPFRdA~~Sap~fg--DRktYQmdp~N~~EAlre~~~D~~EG 342 (435)
+.+.- .++++.=.=-+-|.++-.+.|- --|.|----.-..+|+++-..|+++|
T Consensus 196 ~igiGaG~~~dgqvlv~~D~lG~~~~~~p~f~k~~~~~~~~~~~a~~~y~~~v~~~ 251 (254)
T cd06557 196 TIGIGAGPDCDGQVLVWHDMLGLSPGFKPKFVKRYADLGELIREAVKAYVEEVKSG 251 (254)
T ss_pred EEEeccCCCCCceeehHHhhcCCCCCCCCCcHHHHhhhHHHHHHHHHHHHHHHhcC
Confidence 66653 3466665656667776654432 23455444445667777777777766
No 59
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=87.26 E-value=7.1 Score=38.14 Aligned_cols=42 Identities=21% Similarity=0.214 Sum_probs=29.0
Q ss_pred hHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEeehh
Q 013861 361 YLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTY 421 (435)
Q Consensus 361 YLDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G~ide~~~v~Esl~~ikRAGAd~IiTY 421 (435)
.++.++++++.+++||.+ .|-+..-+-+.|.| ++|||+|--+
T Consensus 219 ~~~~i~~i~~~~~ipii~---------------~GGI~~~~da~~~l----~~GAd~V~ig 260 (296)
T cd04740 219 ALRMVYQVYKAVEIPIIG---------------VGGIASGEDALEFL----MAGASAVQVG 260 (296)
T ss_pred HHHHHHHHHHhcCCCEEE---------------ECCCCCHHHHHHHH----HcCCCEEEEc
Confidence 589999999999999886 34443333334443 5899988643
No 60
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=86.70 E-value=49 Score=35.49 Aligned_cols=216 Identities=16% Similarity=0.226 Sum_probs=118.0
Q ss_pred CCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCc-CCCCCHHHHHHHHHHHCCCeEEE--eee-ccc
Q 013861 147 MPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAY-NDNGLVPRTIWLLKDRYPDLVIY--TDV-ALD 222 (435)
Q Consensus 147 MPGv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~-~~~g~v~raIr~iK~~~Pdl~Ii--tDV-cLc 222 (435)
-++..|++.+ +.++.++.+.+.|+.++=+.|- +.-|. +..+ +++ --..++.|++..|+..+. +-. .+.
T Consensus 17 s~~~~~~~t~-dkl~ia~~Ld~~Gv~~IE~~gg---atf~~--~~~f~~e~--p~e~l~~l~~~~~~~~l~~l~r~~N~~ 88 (448)
T PRK12331 17 SLIATRMTTE-EMLPILEKLDNAGYHSLEMWGG---ATFDA--CLRFLNED--PWERLRKIRKAVKKTKLQMLLRGQNLL 88 (448)
T ss_pred CcCCcccCHH-HHHHHHHHHHHcCCCEEEecCC---ccchh--hhccCCCC--HHHHHHHHHHhCCCCEEEEEecccccc
Confidence 4555688886 5899999999999999988542 11110 0011 222 246889999988986543 211 122
Q ss_pred CCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCC---CchHHHHHHHHHHCCCCCceeechhhhhcc
Q 013861 223 PYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMM---DGRVGAIRAALDAEGFQHVSIMSYTAKYAS 299 (435)
Q Consensus 223 ~YTshGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMM---DGrVgAIR~aLD~~Gf~~v~IMSYSaKyAS 299 (435)
.|+.. -|..++...+.|+ ++|.|+|--.|-+ +....+|+.+ .+.|+.-..-++|+.
T Consensus 89 G~~~~-------------pddvv~~~v~~A~---~~Gvd~irif~~lnd~~n~~~~v~~a-k~~G~~v~~~i~~t~---- 147 (448)
T PRK12331 89 GYRNY-------------ADDVVESFVQKSV---ENGIDIIRIFDALNDVRNLETAVKAT-KKAGGHAQVAISYTT---- 147 (448)
T ss_pred ccccC-------------chhhHHHHHHHHH---HCCCCEEEEEEecCcHHHHHHHHHHH-HHcCCeEEEEEEeec----
Confidence 22111 1333444445543 6799987655433 3333344433 456763333356652
Q ss_pred cccccchhhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhCCCCeEEE
Q 013861 300 SFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAAY 379 (435)
Q Consensus 300 afYGPFRdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~~lPvaaY 379 (435)
+|+ .++.-..+-.+++ ++-|||.|-+.--....+|... -++|+.+|+.+++|| .+
T Consensus 148 ---~p~-----------------~~~~~~~~~a~~l---~~~Gad~I~i~Dt~G~l~P~~v-~~lv~alk~~~~~pi-~~ 202 (448)
T PRK12331 148 ---SPV-----------------HTIDYFVKLAKEM---QEMGADSICIKDMAGILTPYVA-YELVKRIKEAVTVPL-EV 202 (448)
T ss_pred ---CCC-----------------CCHHHHHHHHHHH---HHcCCCEEEEcCCCCCCCHHHH-HHHHHHHHHhcCCeE-EE
Confidence 121 2332333333333 3469999996555555667644 579999999999997 44
Q ss_pred EechHH----HHHHHHHHCC--CCch---------hhHHHHHHH-HHHHhccc
Q 013861 380 QVSGEY----SMIKAGGALK--MIDE---------QRVMMESLM-CLRRAGAD 416 (435)
Q Consensus 380 qVSGEY----aMikaAa~~G--~ide---------~~~v~Esl~-~ikRAGAd 416 (435)
|--=.+ +-.-+|.++| ++|- -+.-+|++. .+++-|-+
T Consensus 203 H~Hnt~GlA~AN~laAieaGad~vD~sv~glg~gaGN~~tE~lv~~L~~~g~~ 255 (448)
T PRK12331 203 HTHATSGIAEMTYLKAIEAGADIIDTAISPFAGGTSQPATESMVAALQDLGYD 255 (448)
T ss_pred EecCCCCcHHHHHHHHHHcCCCEEEeeccccCCCcCCHhHHHHHHHHHhcCCC
Confidence 552222 2233456666 3332 234456554 45555655
No 61
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=86.52 E-value=6.8 Score=38.70 Aligned_cols=108 Identities=16% Similarity=0.158 Sum_probs=67.8
Q ss_pred cCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCC--------CCchHHHHHHHHHHCCCCCceeechhhhhcccccccc
Q 013861 234 REDGVIMNDETVHQLCKQAVSQARAGADVVSPSDM--------MDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPF 305 (435)
Q Consensus 234 ~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDM--------MDGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPF 305 (435)
++||.|| .+.++.|.+- +.++|+|-|.+.+. .+=|...++.+.+..+ .+++|+.-.
T Consensus 18 ~~dg~iD-~~~l~~li~~---l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~-g~~pvi~gv----------- 81 (296)
T TIGR03249 18 DADGSFD-EAAYRENIEW---LLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAK-GKVPVYTGV----------- 81 (296)
T ss_pred CCCCCcC-HHHHHHHHHH---HHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhC-CCCcEEEec-----------
Confidence 4578876 4445555544 44799999887654 3456667777776654 456666331
Q ss_pred hhhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCch-------HHHHHHHHhhCCCCeEE
Q 013861 306 REALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPY-------LDVIRLLRDKYPLPIAA 378 (435)
Q Consensus 306 RdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~Y-------LDIIr~vk~~~~lPvaa 378 (435)
. .|.+||++.++.=.+-|||.+| |=|--.| .+=.+.+.+..++||.-
T Consensus 82 ------------------~-~~t~~ai~~a~~a~~~Gadav~-------~~pP~y~~~s~~~i~~~f~~v~~a~~~pvil 135 (296)
T TIGR03249 82 ------------------G-GNTSDAIEIARLAEKAGADGYL-------LLPPYLINGEQEGLYAHVEAVCESTDLGVIV 135 (296)
T ss_pred ------------------C-ccHHHHHHHHHHHHHhCCCEEE-------ECCCCCCCCCHHHHHHHHHHHHhccCCCEEE
Confidence 1 1456666666666677888888 5543221 34445666777888888
Q ss_pred EEech
Q 013861 379 YQVSG 383 (435)
Q Consensus 379 YqVSG 383 (435)
||-+|
T Consensus 136 Yn~~g 140 (296)
T TIGR03249 136 YQRDN 140 (296)
T ss_pred EeCCC
Confidence 88555
No 62
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=86.21 E-value=5.1 Score=41.03 Aligned_cols=147 Identities=18% Similarity=0.237 Sum_probs=89.0
Q ss_pred HHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCcc
Q 013861 160 VQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVI 239 (435)
Q Consensus 160 ~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTshGHcGIv~e~g~I 239 (435)
.+..+-+-+.|-..|+|-=.+|.+ +=..| -+.--+++ .-|+.||+.. ++=||.=+ -.||
T Consensus 27 ~~~a~iae~~g~~~v~~~~~~psd-~~~~g-g~~Rm~~p--~~I~aIk~~V-~iPVigk~------Righ---------- 85 (293)
T PRK04180 27 AEQAKIAEEAGAVAVMALERVPAD-IRAAG-GVARMADP--KMIEEIMDAV-SIPVMAKA------RIGH---------- 85 (293)
T ss_pred HHHHHHHHHhChHHHHHccCCCch-HhhcC-CeeecCCH--HHHHHHHHhC-CCCeEEee------hhhH----------
Confidence 455666778888888875556754 33334 23333332 4567888886 55555321 1233
Q ss_pred ccHHHHHHHHHHHHHHHHcCCCeecCCCCCCc---hHHHHHHHHHHCCCCCceeechhhhhcccccccchhhhcCCCCCC
Q 013861 240 MNDETVHQLCKQAVSQARAGADVVSPSDMMDG---RVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFG 316 (435)
Q Consensus 240 dND~Tv~~Lak~Avs~A~AGADiVAPSDMMDG---rVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRdA~~Sap~fg 316 (435)
-+.|..+.++|+|+|.=|+-.-- .+..+| +.| ++++|.
T Consensus 86 ---------~~Ea~~L~~~GvDiID~Te~lrpad~~~~~~K-----~~f-~~~fma------------------------ 126 (293)
T PRK04180 86 ---------FVEAQILEALGVDYIDESEVLTPADEEYHIDK-----WDF-TVPFVC------------------------ 126 (293)
T ss_pred ---------HHHHHHHHHcCCCEEeccCCCCchHHHHHHHH-----HHc-CCCEEc------------------------
Confidence 56677889999999965554322 222222 223 444442
Q ss_pred CccccCCCCCCHHHHHHHHHhcccccccEEecc------------------------cCCC-------cccCCCchHHHH
Q 013861 317 DKKTYQMNPANYREALVEAQADESEGADILLFS------------------------VLGS-------QVKPGLPYLDVI 365 (435)
Q Consensus 317 DRktYQmdp~N~~EAlre~~~D~~EGADilM~~------------------------~~~~-------~VKPal~YLDII 365 (435)
|-+|..||++.. +||||||-.. ..|- .-|.-.+-+|+|
T Consensus 127 -------d~~~l~EAlrai----~~GadmI~Ttge~gtg~v~~av~h~r~~~~~i~~L~gyt~~~~~~~a~~~~~~~elL 195 (293)
T PRK04180 127 -------GARNLGEALRRI----AEGAAMIRTKGEAGTGNVVEAVRHMRQINGEIRRLTSMSEDELYTAAKELQAPYELV 195 (293)
T ss_pred -------cCCCHHHHHHHH----HCCCCeeeccCCCCCccHHHHHHHHHHHHHHHHHHhCCCHHHHHhhccccCCCHHHH
Confidence 456888888875 6799999832 1110 011234568999
Q ss_pred HHHHhhCCCCeE
Q 013861 366 RLLRDKYPLPIA 377 (435)
Q Consensus 366 r~vk~~~~lPva 377 (435)
+++++..++||.
T Consensus 196 ~ei~~~~~iPVV 207 (293)
T PRK04180 196 KEVAELGRLPVV 207 (293)
T ss_pred HHHHHhCCCCEE
Confidence 999999999985
No 63
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=86.10 E-value=55 Score=35.45 Aligned_cols=197 Identities=17% Similarity=0.184 Sum_probs=109.3
Q ss_pred CCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCC
Q 013861 147 MPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSS 226 (435)
Q Consensus 147 MPGv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTs 226 (435)
-++-.|++.+ +.+..++.+.+.|+.++=+.|- +.-|...+-. +++ --..++.|++..|+.-+.+ ||
T Consensus 16 s~~~~~~~t~-dkl~Ia~~Ld~~Gv~~IE~~gg---atfd~~~~Fl-~e~--p~e~l~~l~~~~~~~~l~~---l~---- 81 (467)
T PRK14041 16 SLIATRMRTE-DMLPALEAFDRMGFYSMEVWGG---ATFDVCVRFL-NEN--PWERLKEIRKRLKNTKIQM---LL---- 81 (467)
T ss_pred CcCCccCCHH-HHHHHHHHHHHcCCCEEEecCC---ccchhhhccc-CCC--HHHHHHHHHHhCCCCEEEE---Ee----
Confidence 3444578875 5899999999999999988652 2232222211 222 3468889988888855431 11
Q ss_pred CCcceeecCCCcc-ccHHHHHHHHHHHHHHHHcCCCeecCCCCC---CchHHHHHHHHHHCCCCCceeechhhhhccccc
Q 013861 227 DGHDGIVREDGVI-MNDETVHQLCKQAVSQARAGADVVSPSDMM---DGRVGAIRAALDAEGFQHVSIMSYTAKYASSFY 302 (435)
Q Consensus 227 hGHcGIv~e~g~I-dND~Tv~~Lak~Avs~A~AGADiVAPSDMM---DGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafY 302 (435)
.|+.. -|+- .-|.-++...+.|+ ++|.|+|--.|-+ +.-..+|+.+ .++|+.-.+-++|+.
T Consensus 82 r~~N~----~G~~~~~dDvv~~fv~~A~---~~Gvd~irif~~lnd~~n~~~~i~~a-k~~G~~v~~~i~~t~------- 146 (467)
T PRK14041 82 RGQNL----VGYRHYADDVVELFVKKVA---EYGLDIIRIFDALNDIRNLEKSIEVA-KKHGAHVQGAISYTV------- 146 (467)
T ss_pred ccccc----cCcccccchhhHHHHHHHH---HCCcCEEEEEEeCCHHHHHHHHHHHH-HHCCCEEEEEEEecc-------
Confidence 11110 0221 12334455555554 6799987554333 2333334333 355763334456652
Q ss_pred ccchhhhcCCCCCCCccccCCCCCCHHHHHHHHHhccc-ccccEEecccCCCcccCCCchHHHHHHHHhhCCCCeEEEEe
Q 013861 303 GPFREALDSNPRFGDKKTYQMNPANYREALVEAQADES-EGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAAYQV 381 (435)
Q Consensus 303 GPFRdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~-EGADilM~~~~~~~VKPal~YLDIIr~vk~~~~lPvaaYqV 381 (435)
+| . .+ .|-+.+....+. -|||.|-+.--....+|.-. -++++.+|+++++||. +|-
T Consensus 147 ~p---------~--------~t----~e~~~~~a~~l~~~Gad~I~i~Dt~G~l~P~~v-~~Lv~~lk~~~~vpI~-~H~ 203 (467)
T PRK14041 147 SP---------V--------HT----LEYYLEFARELVDMGVDSICIKDMAGLLTPKRA-YELVKALKKKFGVPVE-VHS 203 (467)
T ss_pred CC---------C--------CC----HHHHHHHHHHHHHcCCCEEEECCccCCcCHHHH-HHHHHHHHHhcCCceE-EEe
Confidence 12 1 01 333444444433 59999985555555667644 4799999999999984 565
Q ss_pred chH----HHHHHHHHHCC
Q 013861 382 SGE----YSMIKAGGALK 395 (435)
Q Consensus 382 SGE----YaMikaAa~~G 395 (435)
--. -+-..+|.++|
T Consensus 204 Hnt~GlA~AN~laAieaG 221 (467)
T PRK14041 204 HCTTGLASLAYLAAVEAG 221 (467)
T ss_pred cCCCCcHHHHHHHHHHhC
Confidence 322 22333456666
No 64
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=85.98 E-value=10 Score=36.77 Aligned_cols=106 Identities=23% Similarity=0.309 Sum_probs=65.1
Q ss_pred CCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCC--------CchHHHHHHHHHHCCCCCceeechhhhhcccccccch
Q 013861 235 EDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMM--------DGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFR 306 (435)
Q Consensus 235 e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMM--------DGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFR 306 (435)
+||.||- +.++.+.+ -+.++|+|-|.+.+.+ +=|...++.+.+..+ .++.|+.-.
T Consensus 14 ~dg~iD~-~~~~~~i~---~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~-~~~~vi~gv------------ 76 (284)
T cd00950 14 DDGSVDF-DALERLIE---FQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVN-GRVPVIAGT------------ 76 (284)
T ss_pred CCCCcCH-HHHHHHHH---HHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhC-CCCcEEecc------------
Confidence 4567764 44444444 3446999999877654 334555555555543 345544321
Q ss_pred hhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCch-------HHHHHHHHhhCCCCeEEE
Q 013861 307 EALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPY-------LDVIRLLRDKYPLPIAAY 379 (435)
Q Consensus 307 dA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~Y-------LDIIr~vk~~~~lPvaaY 379 (435)
-..|.+|+++.++.=.+-|||.+| +=|-..| ++-.+++.+..++||.-|
T Consensus 77 -----------------~~~~~~~~~~~a~~a~~~G~d~v~-------~~~P~~~~~~~~~l~~~~~~ia~~~~~pi~lY 132 (284)
T cd00950 77 -----------------GSNNTAEAIELTKRAEKAGADAAL-------VVTPYYNKPSQEGLYAHFKAIAEATDLPVILY 132 (284)
T ss_pred -----------------CCccHHHHHHHHHHHHHcCCCEEE-------EcccccCCCCHHHHHHHHHHHHhcCCCCEEEE
Confidence 112557777777766778999888 5544322 344556667788999999
Q ss_pred Ee
Q 013861 380 QV 381 (435)
Q Consensus 380 qV 381 (435)
|.
T Consensus 133 n~ 134 (284)
T cd00950 133 NV 134 (284)
T ss_pred EC
Confidence 86
No 65
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=85.98 E-value=3.8 Score=41.25 Aligned_cols=64 Identities=25% Similarity=0.398 Sum_probs=44.5
Q ss_pred ccccEEecccCCCcccCCC-------chHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHh
Q 013861 341 EGADILLFSVLGSQVKPGL-------PYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRA 413 (435)
Q Consensus 341 EGADilM~~~~~~~VKPal-------~YLDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G~ide~~~v~Esl~~ikRA 413 (435)
.|||.|.+..--..+++.. .|.++++.+++..++||.+...-+ + + -+.|....+..+
T Consensus 126 agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~~iPV~vKl~p~------------~-~---~~~~~a~~l~~~ 189 (334)
T PRK07565 126 AGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAVSIPVAVKLSPY------------F-S---NLANMAKRLDAA 189 (334)
T ss_pred cCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhccCCcEEEEeCCC------------c-h---hHHHHHHHHHHc
Confidence 4899998644222344443 378999999999999999996521 1 1 134566677889
Q ss_pred cccEeeh
Q 013861 414 GADIILT 420 (435)
Q Consensus 414 GAd~IiT 420 (435)
|+|.|+.
T Consensus 190 G~dgI~~ 196 (334)
T PRK07565 190 GADGLVL 196 (334)
T ss_pred CCCeEEE
Confidence 9998753
No 66
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=85.81 E-value=7.8 Score=37.94 Aligned_cols=107 Identities=22% Similarity=0.289 Sum_probs=68.5
Q ss_pred cCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCC--------CchHHHHHHHHHHCCCCCceeechhhhhcccccccc
Q 013861 234 REDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMM--------DGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPF 305 (435)
Q Consensus 234 ~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMM--------DGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPF 305 (435)
+++|.||-| .++.+.+ -+.++|+|-|.+.+.+ +=|...++.+.+..+ .+++|+.-.
T Consensus 11 ~~~g~iD~~-~~~~~i~---~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~-~~~~vi~gv----------- 74 (285)
T TIGR00674 11 KEDGSVDFA-ALEKLID---FQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVN-GRVPVIAGT----------- 74 (285)
T ss_pred CCCCCcCHH-HHHHHHH---HHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhC-CCCeEEEeC-----------
Confidence 456777644 4444444 3447999999876542 235556666666543 356665432
Q ss_pred hhhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCch-------HHHHHHHHhhCCCCeEE
Q 013861 306 REALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPY-------LDVIRLLRDKYPLPIAA 378 (435)
Q Consensus 306 RdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~Y-------LDIIr~vk~~~~lPvaa 378 (435)
...|.+|+++.++.=.+-|||.+| |=|-..| ++-.+.+.+.+++||..
T Consensus 75 ------------------~~~s~~~~i~~a~~a~~~Gad~v~-------v~pP~y~~~~~~~i~~~~~~i~~~~~~pi~l 129 (285)
T TIGR00674 75 ------------------GSNATEEAISLTKFAEDVGADGFL-------VVTPYYNKPTQEGLYQHFKAIAEEVDLPIIL 129 (285)
T ss_pred ------------------CCccHHHHHHHHHHHHHcCCCEEE-------EcCCcCCCCCHHHHHHHHHHHHhcCCCCEEE
Confidence 123578888888877789999999 6654333 23345666778999999
Q ss_pred EEe
Q 013861 379 YQV 381 (435)
Q Consensus 379 YqV 381 (435)
|+.
T Consensus 130 Yn~ 132 (285)
T TIGR00674 130 YNV 132 (285)
T ss_pred EEC
Confidence 985
No 67
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=85.49 E-value=7.5 Score=43.09 Aligned_cols=257 Identities=18% Similarity=0.182 Sum_probs=147.4
Q ss_pred CCCCCCCChHHHh-hhhcCCCCCCCceeeEEEeeCCCCcccCCCCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCC
Q 013861 105 RPRRNRKSPAMRA-SFQETNLSPANFVYPLFIHEGEEDTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDA 183 (435)
Q Consensus 105 R~RRlR~~~~~R~-l~~Et~L~~~~LI~PlFV~eg~~~~~I~sMPGv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~ 183 (435)
-.|-++-+||-|= .+++. + |+-.++ ++..|.+ .+|...|.= +-+..+++.+.+.||.-+-+|=-
T Consensus 54 ~~rfl~edpwerl~~~r~~-~-pnt~lq--mL~Rg~N------~vGy~~~~d-~vv~~~v~~a~~~Gidv~Rifd~---- 118 (596)
T PRK14042 54 CLRFLKEDPWSRLRQLRQA-L-PNTQLS--MLLRGQN------LLGYRNYAD-DVVRAFVKLAVNNGVDVFRVFDA---- 118 (596)
T ss_pred eecccCCCHHHHHHHHHHh-C-CCCceE--EEecccc------ccccccCCh-HHHHHHHHHHHHcCCCEEEEccc----
Confidence 4677888888662 14443 2 443333 3344666 889888873 34566899999999998888743
Q ss_pred CCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCee
Q 013861 184 LKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVV 263 (435)
Q Consensus 184 ~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTshGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiV 263 (435)
+|+-.-+.++|+.+|+.- . ++-.|+|=-+++-| |++.+.++|-...++|||.|
T Consensus 119 ---------lnd~~n~~~~i~~~k~~G--~--~~~~~i~yt~sp~~--------------t~e~~~~~ak~l~~~Gad~I 171 (596)
T PRK14042 119 ---------LNDARNLKVAIDAIKSHK--K--HAQGAICYTTSPVH--------------TLDNFLELGKKLAEMGCDSI 171 (596)
T ss_pred ---------CcchHHHHHHHHHHHHcC--C--EEEEEEEecCCCCC--------------CHHHHHHHHHHHHHcCCCEE
Confidence 444455677999999863 3 44455542224322 67777777777888999999
Q ss_pred cCCCCCC--------chHHHHHHHHHHC-CC--CCceeechhhhhcccccccchhhhcCCCC-CCCccccCCCCCCHH-H
Q 013861 264 SPSDMMD--------GRVGAIRAALDAE-GF--QHVSIMSYTAKYASSFYGPFREALDSNPR-FGDKKTYQMNPANYR-E 330 (435)
Q Consensus 264 APSDMMD--------GrVgAIR~aLD~~-Gf--~~v~IMSYSaKyASafYGPFRdA~~Sap~-fgDRktYQmdp~N~~-E 330 (435)
+-.||.= =.|.+||++++-. +| +++.=|+-+.=.+..--| =|.++++-. +|-+. +|.. |
T Consensus 172 ~IkDtaG~l~P~~v~~lv~alk~~~~ipi~~H~Hnt~Gla~an~laAieaG--ad~iD~ai~glGg~t------Gn~~tE 243 (596)
T PRK14042 172 AIKDMAGLLTPTVTVELYAGLKQATGLPVHLHSHSTSGLASICHYEAVLAG--CNHIDTAISSFSGGA------SHPPTE 243 (596)
T ss_pred EeCCcccCCCHHHHHHHHHHHHhhcCCEEEEEeCCCCCcHHHHHHHHHHhC--CCEEEeccccccCCC------CcHhHH
Confidence 9999974 3567788775311 22 444445554434443334 233444443 45442 3321 3
Q ss_pred HHHHHH--hcccccccEEecccCCCcccCCCchHHHHHHHHhhCC-------CCeEEEEe-chHHHHHHH-HHHCCCCch
Q 013861 331 ALVEAQ--ADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYP-------LPIAAYQV-SGEYSMIKA-GGALKMIDE 399 (435)
Q Consensus 331 Alre~~--~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~~-------lPvaaYqV-SGEYaMika-Aa~~G~ide 399 (435)
.+..+. ...+-|-|+-. +....-|+-=||..-..|. .=|--||+ =|-|+-++. +.+.|..|.
T Consensus 244 ~lv~~L~~~g~~tgidl~~-------l~~~~~~~~~vr~~y~~~~~~~~~~~~~v~~hq~PGG~~snl~~Ql~~~g~~d~ 316 (596)
T PRK14042 244 ALVAALTDTPYDTELDLNI-------LLEIDDYFKAVRKKYSQFESEAQNIDPRVQLYQVPGGMISNLYNQLKEQNALDK 316 (596)
T ss_pred HHHHHHHhcCCCCCCCHHH-------HHHHHHHHHHHHHHHhhcCCccccCCcceeecCCCcchhhHHHHHHHHCCcHhH
Confidence 233332 23344555544 4444444444443322221 12333444 355665544 778898886
Q ss_pred hhHHHHHHHHHHHhcccEe
Q 013861 400 QRVMMESLMCLRRAGADII 418 (435)
Q Consensus 400 ~~~v~Esl~~ikRAGAd~I 418 (435)
=.-++|.+-..++-.-++|
T Consensus 317 ~~ev~~e~~~v~~~lG~~~ 335 (596)
T PRK14042 317 MDAVHKEIPRVRKDLGYPP 335 (596)
T ss_pred HHHHHHHHHHHHHHcCCCC
Confidence 5556666666666555555
No 68
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=85.44 E-value=22 Score=36.06 Aligned_cols=177 Identities=19% Similarity=0.212 Sum_probs=94.3
Q ss_pred CCCHHHHHHHHHHHC---CCeEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCe----------
Q 013861 196 NGLVPRTIWLLKDRY---PDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADV---------- 262 (435)
Q Consensus 196 ~g~v~raIr~iK~~~---Pdl~IitDVcLc~YTshGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADi---------- 262 (435)
+.+.++-++...++- --|+|...++.++- ..++-+ .-.+.+|+-++.|.+.+-.--+.|+-+
T Consensus 29 ~~~~~~~~~~y~~rA~gG~glii~~~~~v~~~-~~~~~~----~~~~~~~~~i~~~~~l~~~vh~~g~~~~~QL~h~G~~ 103 (353)
T cd02930 29 DDGIDRLAAFYAERARGGVGLIVTGGFAPNEA-GKLGPG----GPVLNSPRQAAGHRLITDAVHAEGGKIALQILHAGRY 103 (353)
T ss_pred CCCCHHHHHHHHHHhcCCceEEEEeeEEeCCc-ccCCCC----CcccCCHHHHHHHHHHHHHHHHcCCEEEeeccCCCCC
Confidence 345677888777655 34777777777654 222211 123677888888888765544455433
Q ss_pred ------ecCCCC--------------------CCchHHHHHHHHHHCCCCCceeec-h---hhhhcc------------c
Q 013861 263 ------VSPSDM--------------------MDGRVGAIRAALDAEGFQHVSIMS-Y---TAKYAS------------S 300 (435)
Q Consensus 263 ------VAPSDM--------------------MDGrVgAIR~aLD~~Gf~~v~IMS-Y---SaKyAS------------a 300 (435)
++||.+ .|.-+.|.+.+. ++||.-|-|+. + -.-|-| +
T Consensus 104 ~~~~~~~~ps~~~~~~~~~~p~~mt~~eI~~i~~~f~~aA~~a~-~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGs 182 (353)
T cd02930 104 AYHPLCVAPSAIRAPINPFTPRELSEEEIEQTIEDFARCAALAR-EAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGS 182 (353)
T ss_pred CCCCCCcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH-HcCCCEEEEecccchHHHHhcCCccCCCcCccCCC
Confidence 677753 122334444443 57999998865 1 011222 2
Q ss_pred ccccc----------hhhhcCCCCCCCccc---cCCCCCCHHHHHHHHHhcccccccEEecccC--CCccc------CCC
Q 013861 301 FYGPF----------REALDSNPRFGDKKT---YQMNPANYREALVEAQADESEGADILLFSVL--GSQVK------PGL 359 (435)
Q Consensus 301 fYGPF----------RdA~~Sap~fgDRkt---YQmdp~N~~EAlre~~~D~~EGADilM~~~~--~~~VK------Pal 359 (435)
+-... |++++.--..+=|-+ |.-+--...|++.-+.+=.+.|+|+|=+|.- ...++ |-.
T Consensus 183 lenR~r~~~eiv~aIR~~vG~d~~v~iRi~~~D~~~~g~~~~e~~~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~ 262 (353)
T cd02930 183 FENRMRFPVEIVRAVRAAVGEDFIIIYRLSMLDLVEGGSTWEEVVALAKALEAAGADILNTGIGWHEARVPTIATSVPRG 262 (353)
T ss_pred HHHHhHHHHHHHHHHHHHcCCCceEEEEecccccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCccccccCCch
Confidence 22222 333322111111111 1101113456654444433469999975431 11121 222
Q ss_pred chHHHHHHHHhhCCCCeEE
Q 013861 360 PYLDVIRLLRDKYPLPIAA 378 (435)
Q Consensus 360 ~YLDIIr~vk~~~~lPvaa 378 (435)
.+++..+++|+.+++||++
T Consensus 263 ~~~~~~~~ik~~v~iPVi~ 281 (353)
T cd02930 263 AFAWATAKLKRAVDIPVIA 281 (353)
T ss_pred hhHHHHHHHHHhCCCCEEE
Confidence 4799999999999999987
No 69
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]
Probab=85.25 E-value=1.1 Score=46.69 Aligned_cols=228 Identities=20% Similarity=0.123 Sum_probs=132.8
Q ss_pred CceeechhhhHHHHHHHHHHcCCCeEEE-eecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCC
Q 013861 149 GCYRLGWRHGLVQEVAKARDVGVNSVVL-FPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSD 227 (435)
Q Consensus 149 Gv~r~s~~~~l~~~v~~~~~~GI~sv~L-Fgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTsh 227 (435)
.=|-++.+ ++.++++++++.|++.|++ +|.-|+ .+ .+ .....++.||+.||++.|.+ ||.-
T Consensus 86 ~~y~Ls~e-eI~~~~~~~~~~G~~Evli~gG~~p~--~~--------~~-y~~~~~~~ik~~~p~~~i~a------~s~~ 147 (370)
T COG1060 86 KAYTLSPE-EILEEVREAVKRGITEVLIVGGEHPE--LS--------LE-YYEELFRTIKEEFPDLHIHA------LSAG 147 (370)
T ss_pred cccccCHH-HHHHHHHHHHHcCCeEEEEecCcCCC--cc--------hH-HHHHHHHHHHHhCcchhhcc------cCHH
Confidence 44788886 6999999999999999987 665332 11 11 78899999999999876643 3221
Q ss_pred CcceeecCCCccccHHHHHHHHHHHHHHHHcCCCe----------------ec-CCCCCCchHHHHHHHHHHCCCCCcee
Q 013861 228 GHDGIVREDGVIMNDETVHQLCKQAVSQARAGADV----------------VS-PSDMMDGRVGAIRAALDAEGFQHVSI 290 (435)
Q Consensus 228 GHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADi----------------VA-PSDMMDGrVgAIR~aLD~~Gf~~v~I 290 (435)
.=.=+ ...+.....|.++.|- +||.|- ++ |.---+.|+..++.|- +.|...++.
T Consensus 148 ei~~~-~~~~~~s~~E~l~~Lk-------~aGldsmpg~~aeil~e~vr~~~~p~K~~~~~wle~~~~Ah-~lGI~~tat 218 (370)
T COG1060 148 EILFL-AREGGLSYEEVLKRLK-------EAGLDSMPGGGAEILSEEVRKIHCPPKKSPEEWLEIHERAH-RLGIPTTAT 218 (370)
T ss_pred HhHHH-HhccCCCHHHHHHHHH-------HcCCCcCcCcceeechHHHHHhhCCCCCCHHHHHHHHHHHH-HcCCCccce
Confidence 11111 1346677888888886 555542 23 3333457888888887 689988888
Q ss_pred echhhhhcccccccchhhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCc---------cc---CC
Q 013861 291 MSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQ---------VK---PG 358 (435)
Q Consensus 291 MSYSaKyASafYGPFRdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~---------VK---Pa 358 (435)
|-|--- .+ ..|.++ .-+.||+.+. .--| +.=|+++--+ ++ ++
T Consensus 219 ml~Gh~-----E~-~ed~~~-----------------hl~~ir~lQ~-~~gg--~~~fI~~~f~p~~~~~~~~~~~~~~~ 272 (370)
T COG1060 219 MLLGHV-----ET-REDRID-----------------HLEHIRDLQD-ETGG--FQEFIPLRFRPENGPLPAEVVPEASL 272 (370)
T ss_pred eEEEec-----CC-HHHHHH-----------------HHHHHHHHHH-HhCC--cEEEEcccccCCCCCccccCCCCCCH
Confidence 887431 11 122221 2223333331 1122 3333332111 21 12
Q ss_pred CchHHHHHHHHhhC--CCC-eEEEEechHHHHHHHHHHCCCCchhhHHHHHHHH-HHHhcccEeehhcHHHHHHHHh
Q 013861 359 LPYLDVIRLLRDKY--PLP-IAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMC-LRRAGADIILTYFALQAARCLC 431 (435)
Q Consensus 359 l~YLDIIr~vk~~~--~lP-vaaYqVSGEYaMikaAa~~G~ide~~~v~Esl~~-ikRAGAd~IiTYfA~~~a~~L~ 431 (435)
.-||-+|+-.|--+ .++ +-+|.|.=+-.+.+++-..|.-|..-.++| .. .+.||+.------..++.+++.
T Consensus 273 ~~~l~~iAiaRi~l~~~i~~~~a~w~~~g~~~~~~~l~~GanD~ggt~~~--E~v~~~a~~~~~~~~~~eel~~~i~ 347 (370)
T COG1060 273 EQDLKAIALARIFLDNNISNIQASWLRDGVILAQAALLSGANDLGGTGYE--EKVNPAAGAFSGDWRSVEELAALIK 347 (370)
T ss_pred HHHHHHHHHHHHHccCccccccCcccccchHHHHHHHHhCcccCcCCCcc--cccccccccccCCCCCHHHHHHHHH
Confidence 33555555555544 366 788888888888888888888777655555 22 4455544211111245555554
No 70
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=84.94 E-value=3.7 Score=37.54 Aligned_cols=70 Identities=34% Similarity=0.483 Sum_probs=48.6
Q ss_pred CCHHHHHHHHHhcccccccEEecccC-CCcccCCCch--HHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhhH
Q 013861 326 ANYREALVEAQADESEGADILLFSVL-GSQVKPGLPY--LDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRV 402 (435)
Q Consensus 326 ~N~~EAlre~~~D~~EGADilM~~~~-~~~VKPal~Y--LDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G~ide~~~ 402 (435)
.|.+| ++++. +.|+|.+.||-+ -++-||+.+- +|-++++++.+++||.| .|-|+.+++
T Consensus 103 h~~~e-~~~a~---~~g~dYv~~gpvf~T~sk~~~~~~g~~~l~~~~~~~~~pv~A---------------lGGI~~~~i 163 (180)
T PF02581_consen 103 HSLEE-AREAE---ELGADYVFLGPVFPTSSKPGAPPLGLDGLREIARASPIPVYA---------------LGGITPENI 163 (180)
T ss_dssp SSHHH-HHHHH---HCTTSEEEEETSS--SSSSS-TTCHHHHHHHHHHHTSSCEEE---------------ESS--TTTH
T ss_pred CcHHH-HHHhh---hcCCCEEEECCccCCCCCccccccCHHHHHHHHHhCCCCEEE---------------EcCCCHHHH
Confidence 36666 44443 789999998865 7888997644 78899999999999988 477887653
Q ss_pred HHHHHHHHHHhcccEee
Q 013861 403 MMESLMCLRRAGADIIL 419 (435)
Q Consensus 403 v~Esl~~ikRAGAd~Ii 419 (435)
..++++||+.|-
T Consensus 164 -----~~l~~~Ga~gvA 175 (180)
T PF02581_consen 164 -----PELREAGADGVA 175 (180)
T ss_dssp -----HHHHHTT-SEEE
T ss_pred -----HHHHHcCCCEEE
Confidence 457789999764
No 71
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=84.93 E-value=19 Score=36.29 Aligned_cols=94 Identities=14% Similarity=0.228 Sum_probs=64.1
Q ss_pred HHHHHHHHHHcCCCeEEEeec--------C-C--CCCCCcccCcCcCCCCCHHHHHHHHHHHCC-CeEEEeeecccCCCC
Q 013861 159 LVQEVAKARDVGVNSVVLFPK--------V-P--DALKSPTGDEAYNDNGLVPRTIWLLKDRYP-DLVIYTDVALDPYSS 226 (435)
Q Consensus 159 l~~~v~~~~~~GI~sv~LFgv--------i-~--~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~P-dl~IitDVcLc~YTs 226 (435)
..+-++.+.+.|...|-|-+- + | +.-.|+.|-.--|.--++.+.|+.||++++ |+.|..|+..++|..
T Consensus 151 ~~~aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~d~~v~vris~~~~~~ 230 (338)
T cd04733 151 FAHAARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGPGFPVGIKLNSADFQR 230 (338)
T ss_pred HHHHHHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEEcHHHcCC
Confidence 555666788899999987432 1 2 234578776555666777889999999995 799999998766532
Q ss_pred CCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCC
Q 013861 227 DGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPS 266 (435)
Q Consensus 227 hGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPS 266 (435)
+| .+.+++ .+.+-.+.++|.|+|.-|
T Consensus 231 ---------~g-~~~eea----~~ia~~Le~~Gvd~iev~ 256 (338)
T cd04733 231 ---------GG-FTEEDA----LEVVEALEEAGVDLVELS 256 (338)
T ss_pred ---------CC-CCHHHH----HHHHHHHHHcCCCEEEec
Confidence 22 233333 344445677899988755
No 72
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=84.74 E-value=4.1 Score=41.06 Aligned_cols=91 Identities=24% Similarity=0.297 Sum_probs=59.5
Q ss_pred CccccCCCCCCHHHHHHHHHhcccccccEEecccCCCc-ccCCCchHHHHHHHHhhC-CCCeEEEEechHHHHHHHHHHC
Q 013861 317 DKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQ-VKPGLPYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGAL 394 (435)
Q Consensus 317 DRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~-VKPal~YLDIIr~vk~~~-~lPvaaYqVSGEYaMikaAa~~ 394 (435)
+.+.|.+++....|.++++. +.|+.-+.|. -|.. ..+---|+|+++.+|+.+ ++.+.+| | ..-+...+...
T Consensus 64 ~~~~y~ls~eeI~e~~~~~~---~~G~~~i~l~-gG~~p~~~~~~~~~i~~~Ik~~~~~i~~~~~--t-~~ei~~~~~~~ 136 (343)
T TIGR03551 64 DADAYLLSLEEIAERAAEAW---KAGATEVCIQ-GGIHPDLDGDFYLDILRAVKEEVPGMHIHAF--S-PMEVYYGARNS 136 (343)
T ss_pred CCCcccCCHHHHHHHHHHHH---HCCCCEEEEE-eCCCCCCCHHHHHHHHHHHHHHCCCceEEec--C-HHHHHHHHHHc
Confidence 45578887766555555544 4588877644 2211 112235699999999986 5888887 2 23333445667
Q ss_pred CCCchhhHHHHHHHHHHHhcccEee
Q 013861 395 KMIDEQRVMMESLMCLRRAGADIIL 419 (435)
Q Consensus 395 G~ide~~~v~Esl~~ikRAGAd~Ii 419 (435)
|.++ -|.|..+|.||.|.|.
T Consensus 137 g~~~-----~e~l~~LkeAGl~~i~ 156 (343)
T TIGR03551 137 GLSV-----EEALKRLKEAGLDSMP 156 (343)
T ss_pred CCCH-----HHHHHHHHHhCccccc
Confidence 7776 4788899999999876
No 73
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=84.73 E-value=5.1 Score=38.96 Aligned_cols=116 Identities=19% Similarity=0.196 Sum_probs=67.8
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHC---CCeEEEeeecccCCCCCCcceeec
Q 013861 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRY---PDLVIYTDVALDPYSSDGHDGIVR 234 (435)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~---Pdl~IitDVcLc~YTshGHcGIv~ 234 (435)
.+.+.++++.+.|+..|.+=..+.+..-...|...+-+-.-..+-|+..++.. +|++|++=+. .|.
T Consensus 85 ~~~~~v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTD--a~~--------- 153 (243)
T cd00377 85 NVARTVRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTD--ALL--------- 153 (243)
T ss_pred HHHHHHHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcC--chh---------
Confidence 58888999999999999883322211111112222222222334555555554 4677775321 120
Q ss_pred CCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCCCceeechh
Q 013861 235 EDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYT 294 (435)
Q Consensus 235 e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMMDGrVgAIR~aLD~~Gf~~v~IMSYS 294 (435)
.+..+++...+.|..+++||||+|-+-..- ....|++.-++ .+.+|+-|.
T Consensus 154 -----~~~~~~~eai~Ra~ay~~AGAD~v~v~~~~--~~~~~~~~~~~---~~~Pl~~~~ 203 (243)
T cd00377 154 -----AGEEGLDEAIERAKAYAEAGADGIFVEGLK--DPEEIRAFAEA---PDVPLNVNM 203 (243)
T ss_pred -----ccCCCHHHHHHHHHHHHHcCCCEEEeCCCC--CHHHHHHHHhc---CCCCEEEEe
Confidence 012245566677899999999999875544 45777776655 467888773
No 74
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=84.71 E-value=2.3 Score=42.80 Aligned_cols=57 Identities=18% Similarity=0.260 Sum_probs=42.4
Q ss_pred ceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEe
Q 013861 150 CYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYT 217 (435)
Q Consensus 150 v~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~Iit 217 (435)
.|+++.+ .++++++++.+.|++.|.|-|-..+ ..+...+...++.||+.+|++-+.+
T Consensus 67 ~y~ls~e-eI~e~~~~~~~~G~~~i~l~gG~~p----------~~~~~~~~~i~~~Ik~~~~~i~~~~ 123 (343)
T TIGR03551 67 AYLLSLE-EIAERAAEAWKAGATEVCIQGGIHP----------DLDGDFYLDILRAVKEEVPGMHIHA 123 (343)
T ss_pred cccCCHH-HHHHHHHHHHHCCCCEEEEEeCCCC----------CCCHHHHHHHHHHHHHHCCCceEEe
Confidence 4788986 6999999999999999988642111 1122456789999999999876543
No 75
>PRK07695 transcriptional regulator TenI; Provisional
Probab=84.64 E-value=4.1 Score=37.73 Aligned_cols=63 Identities=21% Similarity=0.336 Sum_probs=45.6
Q ss_pred cccccEEecc-cCCCcccCCC--chHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhccc
Q 013861 340 SEGADILLFS-VLGSQVKPGL--PYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGAD 416 (435)
Q Consensus 340 ~EGADilM~~-~~~~~VKPal--~YLDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G~ide~~~v~Esl~~ikRAGAd 416 (435)
+.|||+++++ +..++-||+. ..++.++++++.+++||.| .|-++.+ .+..+..+|||
T Consensus 113 ~~Gadyi~~g~v~~t~~k~~~~~~g~~~l~~~~~~~~ipvia---------------~GGI~~~-----~~~~~~~~Ga~ 172 (201)
T PRK07695 113 KNGADYVVYGHVFPTDCKKGVPARGLEELSDIARALSIPVIA---------------IGGITPE-----NTRDVLAAGVS 172 (201)
T ss_pred HcCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHhCCCCEEE---------------EcCCCHH-----HHHHHHHcCCC
Confidence 4699999975 4556677653 3578999999999999986 4666654 34555679999
Q ss_pred Ee--ehhc
Q 013861 417 II--LTYF 422 (435)
Q Consensus 417 ~I--iTYf 422 (435)
.| .+.+
T Consensus 173 gvav~s~i 180 (201)
T PRK07695 173 GIAVMSGI 180 (201)
T ss_pred EEEEEHHH
Confidence 76 4444
No 76
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=84.32 E-value=35 Score=40.85 Aligned_cols=233 Identities=14% Similarity=0.139 Sum_probs=132.2
Q ss_pred CCCceeechhhhHHHHHHH-HHHcCCCeEEE--eecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCC--------CeEE
Q 013861 147 MPGCYRLGWRHGLVQEVAK-ARDVGVNSVVL--FPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYP--------DLVI 215 (435)
Q Consensus 147 MPGv~r~s~~~~l~~~v~~-~~~~GI~sv~L--Fgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~P--------dl~I 215 (435)
-|...-++- .++++++.+ -++.|-.-+.- |+.-+..++ ..|-+ ..-..+..+++++.|+... +..|
T Consensus 40 ~~e~l~lt~-Pe~I~~IH~~Yl~AGAdII~TNTF~a~~~~L~-~yg~~-~~~~eln~~av~lAr~Aa~~~~~~~~~~~~V 116 (1178)
T TIGR02082 40 NNDILNLTK-PEVIATIHRAYFEAGADIIETNTFNSTTISQA-DYDLE-DLIYDLNFKGAKLARAVADEFTLTPEKPRFV 116 (1178)
T ss_pred CcHHhhcCC-HHHHHHHHHHHHHHhchheecCCccCCHHHHh-hCCHH-HHHHHHHHHHHHHHHHHHHhhcccCCCceEE
Confidence 334444443 357777775 57888763322 664221111 11111 0112344567777775542 3667
Q ss_pred EeeecccCCCCCCccee-ecCC--CccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCc-----hHHHHHHHHHHCCCCC
Q 013861 216 YTDVALDPYSSDGHDGI-VRED--GVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDG-----RVGAIRAALDAEGFQH 287 (435)
Q Consensus 216 itDVcLc~YTshGHcGI-v~e~--g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMMDG-----rVgAIR~aLD~~Gf~~ 287 (435)
..+ +.||+..-..|= +... +.+.-|+-.+...+|+-.+.++|+|+|.---|.|- =+.++|+.+.+.| .+
T Consensus 117 AGs--IGP~g~~~~lgp~~~~~~~~~~t~del~~~y~eq~~~L~~~GvD~iliETi~d~~EakAal~a~~~~~~~~~-~~ 193 (1178)
T TIGR02082 117 AGS--MGPTNKTATLSPDVERPGFRNVTYDELVDAYTEQAKGLLDGGVDLLLIETCFDTLNAKAALFAAETVFEEKG-RE 193 (1178)
T ss_pred EEE--eCCCCCCccCCCccccCccCCCCHHHHHHHHHHHHHHHHhCCCCEEEEeccCCHHHHHHHHHHHHHHHhhcC-CC
Confidence 776 456664322220 1001 24566888889999999999999999999999994 3445555554445 46
Q ss_pred ceeechhhhhcccccccchhhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEecccC-CCcccCCCchHHHHH
Q 013861 288 VSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVL-GSQVKPGLPYLDVIR 366 (435)
Q Consensus 288 v~IMSYSaKyASafYGPFRdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~-~~~VKPal~YLDIIr 366 (435)
++||--- .++. .- | .-++-.+..+++ ++.. ..|+|.|.+..- | |. .-+.+|+
T Consensus 194 lPv~vS~-----~~~d----~~------G----r~~~G~~~~~~~-~~l~--~~~~~avGlNCs~g----P~-~m~~~l~ 246 (1178)
T TIGR02082 194 LPIMISG-----TIVD----TS------G----RTLSGQTIEAFL-TSLE--HAGIDMIGLNCALG----PD-EMRPHLK 246 (1178)
T ss_pred CeEEEEE-----EEEC----CC------C----eeCCCCcHHHHH-HHHh--cCCCCEEEeCCCCC----HH-HHHHHHH
Confidence 7776320 1111 00 1 112333444444 3333 579999883322 2 21 3467788
Q ss_pred HHHhhCCCCeEEEEechHHHHHHHHHHCCCCch-hhHHHHHHHHHHHh-cccEe
Q 013861 367 LLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDE-QRVMMESLMCLRRA-GADII 418 (435)
Q Consensus 367 ~vk~~~~lPvaaYqVSGEYaMikaAa~~G~ide-~~~v~Esl~~ikRA-GAd~I 418 (435)
.+.+.++.|+.+|-=+|+=. ..|.+|+ ...+-|.+..+..+ |+.+|
T Consensus 247 ~l~~~~~~pi~vyPNAGlP~------~~~~yd~~p~~~a~~~~~~~~~ggv~II 294 (1178)
T TIGR02082 247 HLSEHAEAYVSCHPNAGLPN------AFGEYDLTPDELAKALADFAAEGGLNIV 294 (1178)
T ss_pred HHHHhcCceEEEEeCCCCCC------CCCcccCCHHHHHHHHHHHHHhCCCcEE
Confidence 88888899999998777411 0123443 24567888888887 58876
No 77
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=84.18 E-value=11 Score=40.77 Aligned_cols=205 Identities=19% Similarity=0.243 Sum_probs=0.0
Q ss_pred CCCCceeechhhhHHHHHHHHHHcCCCeEEE-eecCCCCCCCcccCcCcCCCCCHHHHHHHHHH---HCCCeEEEeeecc
Q 013861 146 AMPGCYRLGWRHGLVQEVAKARDVGVNSVVL-FPKVPDALKSPTGDEAYNDNGLVPRTIWLLKD---RYPDLVIYTDVAL 221 (435)
Q Consensus 146 sMPGv~r~s~~~~l~~~v~~~~~~GI~sv~L-Fgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~---~~Pdl~IitDVcL 221 (435)
..|| .+++.++ -++.++.|.++|++.+=. ||. ...+| .++++.|.+ ....+...+...-
T Consensus 18 Q~~g-~~~s~e~-Kl~ia~~L~~~Gvd~IEvG~p~--as~~d-------------~~~~~~i~~~~l~~~~i~~~~~~~~ 80 (524)
T PRK12344 18 QGEG-ISFSVED-KLRIARKLDELGVDYIEGGWPG--SNPKD-------------TEFFKRAKELKLKHAKLAAFGSTRR 80 (524)
T ss_pred cCCC-CCCCHHH-HHHHHHHHHHcCCCEEEEcCCc--CChhH-------------HHHHHHHHHhCCCCcEEEEEeeccc
Q ss_pred cCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCe----ecCCCCCCchHHHHHHHHHHCCCCCceeechhhhh
Q 013861 222 DPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADV----VSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKY 297 (435)
Q Consensus 222 c~YTshGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADi----VAPSDMMDGrVgAIR~aLD~~Gf~~v~IMSYSaKy 297 (435)
--+. ..||.+++.+ .++|+++ ++.||+. ++..|...-=..+-.+-=+.||
T Consensus 81 ~~i~-------------~~~d~~~e~~-------~~~g~~~i~i~~~~Sd~h------~~~~l~~s~~e~l~~~~~~v~~ 134 (524)
T PRK12344 81 AGVS-------------AEEDPNLQAL-------LDAGTPVVTIFGKSWDLH------VTEALRTTLEENLAMIRDSVAY 134 (524)
T ss_pred cCCC-------------cccHHHHHHH-------HhCCCCEEEEEECCCHHH------HHHHcCCCHHHHHHHHHHHHHH
Q ss_pred cccccccchhhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhCCCCeE
Q 013861 298 ASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIA 377 (435)
Q Consensus 298 ASafYGPFRdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~~lPva 377 (435)
+-.+ .-++.-++..|.| .|--||.-..|.++++. +.|||.+.+.---..--|. -+-++|+.+++++++|+.
T Consensus 135 ak~~---G~~v~~~~e~~~D--a~r~d~~~l~~~~~~~~---~~Gad~i~l~DTvG~~~P~-~v~~li~~l~~~~~v~i~ 205 (524)
T PRK12344 135 LKAH---GREVIFDAEHFFD--GYKANPEYALATLKAAA---EAGADWVVLCDTNGGTLPH-EVAEIVAEVRAAPGVPLG 205 (524)
T ss_pred HHHc---CCeEEEccccccc--cccCCHHHHHHHHHHHH---hCCCCeEEEccCCCCcCHH-HHHHHHHHHHHhcCCeEE
Q ss_pred EEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEe
Q 013861 378 AYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADII 418 (435)
Q Consensus 378 aYqVSGEYaMikaAa~~G~ide~~~v~Esl~~ikRAGAd~I 418 (435)
+|- -=|.--++--+|.++ +||||.|
T Consensus 206 -~H~--------------HND~GlA~ANslaAi-~aGa~~V 230 (524)
T PRK12344 206 -IHA--------------HNDSGCAVANSLAAV-EAGARQV 230 (524)
T ss_pred -EEE--------------CCCCChHHHHHHHHH-HhCCCEE
No 78
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=84.11 E-value=11 Score=38.12 Aligned_cols=168 Identities=24% Similarity=0.298 Sum_probs=99.2
Q ss_pred CCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCC-----HHHHHHHHHHHCCCeEEEeeecc
Q 013861 147 MPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGL-----VPRTIWLLKDRYPDLVIYTDVAL 221 (435)
Q Consensus 147 MPGv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~-----v~raIr~iK~~~Pdl~IitDVcL 221 (435)
+||+ ||- +- ..-+.+.|.+++.+=|- .-+ ++..+-+-|+ +...++.|-+.. ++=|++|.
T Consensus 17 ~p~~----~Da-~S--Ari~e~aGf~Ai~~sg~-~~a-----~~lG~pD~g~lt~~e~~~~~~~I~~~~-~iPviaD~-- 80 (285)
T TIGR02317 17 IPGA----INA-MA--ALLAERAGFEAIYLSGA-AVA-----ASLGLPDLGITTLDEVAEDARRITRVT-DLPLLVDA-- 80 (285)
T ss_pred eCCC----CCH-HH--HHHHHHcCCCEEEEcHH-HHH-----HhCCCCCCCCCCHHHHHHHHHHHHhcc-CCCEEEEC--
Confidence 7888 332 21 22344569999887321 000 1112222233 234566665554 35566664
Q ss_pred cCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCC--------CCch--------HHHHHHHHHHCCC
Q 013861 222 DPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDM--------MDGR--------VGAIRAALDAEGF 285 (435)
Q Consensus 222 c~YTshGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDM--------MDGr--------VgAIR~aLD~~Gf 285 (435)
++|+=+ -..+ .+..-.+.++||.-|--.|= |.|+ +..||.+.+...=
T Consensus 81 -------------d~GyG~-~~~v---~~tv~~~~~aG~agi~IEDq~~pK~cgh~~g~~lv~~ee~~~kI~Aa~~a~~~ 143 (285)
T TIGR02317 81 -------------DTGFGE-AFNV---ARTVREMEDAGAAAVHIEDQVLPKRCGHLPGKELVSREEMVDKIAAAVDAKRD 143 (285)
T ss_pred -------------CCCCCC-HHHH---HHHHHHHHHcCCeEEEEecCCCccccCCCCCccccCHHHHHHHHHHHHHhccC
Confidence 233322 2222 23344567888855544441 2332 5666666665433
Q ss_pred CCceeechhhhhcccccccchhhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHH
Q 013861 286 QHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVI 365 (435)
Q Consensus 286 ~~v~IMSYSaKyASafYGPFRdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDII 365 (435)
.++-|++-+--|.. ...+|||+.+..=.+-|||+|+ | |++.-+|-|
T Consensus 144 ~d~~IiARTDa~~~--------------------------~g~deAI~Ra~ay~~AGAD~vf-------i-~g~~~~e~i 189 (285)
T TIGR02317 144 EDFVIIARTDARAV--------------------------EGLDAAIERAKAYVEAGADMIF-------P-EALTSLEEF 189 (285)
T ss_pred CCEEEEEEcCcccc--------------------------cCHHHHHHHHHHHHHcCCCEEE-------e-CCCCCHHHH
Confidence 57888877554421 1268999999998899999999 6 788889999
Q ss_pred HHHHhhCCCCeEEEEe
Q 013861 366 RLLRDKYPLPIAAYQV 381 (435)
Q Consensus 366 r~vk~~~~lPvaaYqV 381 (435)
+++.+..+.|+.+=.+
T Consensus 190 ~~~~~~i~~Pl~~n~~ 205 (285)
T TIGR02317 190 RQFAKAVKVPLLANMT 205 (285)
T ss_pred HHHHHhcCCCEEEEec
Confidence 9999999999854433
No 79
>PRK12999 pyruvate carboxylase; Reviewed
Probab=84.01 E-value=2.6 Score=49.71 Aligned_cols=97 Identities=19% Similarity=0.253 Sum_probs=66.7
Q ss_pred HHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCc
Q 013861 159 LVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGV 238 (435)
Q Consensus 159 l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTshGHcGIv~e~g~ 238 (435)
..++++.+.+.|+.-|-+|=- ..| ---+.++|+.+|+. .. ++.+|+| ||.+ |++....
T Consensus 629 ~~~~i~~a~~~Gid~~rifd~----lnd---------~~~~~~~i~~vk~~--g~--~~~~~i~-ytg~----~~d~~~~ 686 (1146)
T PRK12999 629 VRAFVREAAAAGIDVFRIFDS----LNW---------VENMRVAIDAVRET--GK--IAEAAIC-YTGD----ILDPARA 686 (1146)
T ss_pred HHHHHHHHHHcCCCEEEEecc----CCh---------HHHHHHHHHHHHHc--CC--eEEEEEE-EEec----CCCCCCC
Confidence 344599999999999999832 222 12277899999887 23 6678887 7632 1211111
Q ss_pred cccHHHHHHHHHHHHHHHHcCCCeecCCCCCC--------chHHHHHHHH
Q 013861 239 IMNDETVHQLCKQAVSQARAGADVVSPSDMMD--------GRVGAIRAAL 280 (435)
Q Consensus 239 IdND~Tv~~Lak~Avs~A~AGADiVAPSDMMD--------GrVgAIR~aL 280 (435)
--|++.+.+.|-...++|||+|+-.||.= -.|.++|+++
T Consensus 687 ---~~~~~~~~~~a~~l~~~Ga~~i~ikDt~G~l~P~~~~~lv~~lk~~~ 733 (1146)
T PRK12999 687 ---KYDLDYYVDLAKELEKAGAHILAIKDMAGLLKPAAAYELVSALKEEV 733 (1146)
T ss_pred ---CCCHHHHHHHHHHHHHcCCCEEEECCccCCCCHHHHHHHHHHHHHHc
Confidence 13667777777778899999999999964 4577888775
No 80
>PRK05927 hypothetical protein; Provisional
Probab=83.86 E-value=1.8 Score=44.39 Aligned_cols=114 Identities=20% Similarity=0.338 Sum_probs=75.0
Q ss_pred CCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEE----eeec-cc
Q 013861 148 PGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIY----TDVA-LD 222 (435)
Q Consensus 148 PGv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~Ii----tDVc-Lc 222 (435)
+.-|+++.+ .+++.++++.+.|++.|.+=|-.. +. .+-..+..+|+.||+.+|++.+- +.++ +|
T Consensus 71 ~~~y~ls~e-ei~~~a~~~~~~G~~~i~i~gG~~-----p~-----~~~e~~~~~i~~ik~~~p~l~~~~~s~~ei~~~~ 139 (350)
T PRK05927 71 SDAYLLSFD-EFRSLMQRYVSAGVKTVLLQGGVH-----PQ-----LGIDYLEELVRITVKEFPSLHPHFFSAVEIAHAA 139 (350)
T ss_pred ccccccCHH-HHHHHHHHHHHCCCCEEEEeCCCC-----CC-----CCHHHHHHHHHHHHHHCCCCcccCCCHHHHHHHH
Confidence 455899986 599999999999999988633211 11 12346789999999999998762 2222 11
Q ss_pred CCCCCCcceeecCCCccccHHHHHHHHHHHHHHHH-cCC--------CeecCCCC-CCchHHHHHHHHHHCCC
Q 013861 223 PYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQAR-AGA--------DVVSPSDM-MDGRVGAIRAALDAEGF 285 (435)
Q Consensus 223 ~YTshGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~-AGA--------DiVAPSDM-MDGrVgAIR~aLD~~Gf 285 (435)
. ..|. ..++++++|.+.-+..=- .|+ ++++|..+ -|-|+..||.|= +.|+
T Consensus 140 --------~---~~G~-~~~e~l~~Lk~aGl~~l~g~~~Et~~~~~~~~~~p~k~~~~~rl~~i~~A~-~lGi 199 (350)
T PRK05927 140 --------Q---VSGI-STEQALERLWDAGQRTIPGGGAEILSERVRKIISPKKMGPDGWIQFHKLAH-RLGF 199 (350)
T ss_pred --------H---hcCC-CHHHHHHHHHHcCcccCCCCCchhCCHHHhhccCCCCCCHHHHHHHHHHHH-HcCC
Confidence 0 1132 246677766554442111 122 78899887 499999999764 7888
No 81
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=83.75 E-value=23 Score=35.76 Aligned_cols=172 Identities=19% Similarity=0.289 Sum_probs=101.6
Q ss_pred CCCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcC-CCCC------HHHHHHHHHHHCCCeEEEee
Q 013861 146 AMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYN-DNGL------VPRTIWLLKDRYPDLVIYTD 218 (435)
Q Consensus 146 sMPGv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~-~~g~------v~raIr~iK~~~Pdl~IitD 218 (435)
+||+.|=+.. ..-+-+.|+..++. | |..|...+. +|+. +..-.+.+.+..|+-+|++|
T Consensus 18 ~m~tayD~~s-------A~i~~~aG~d~ilv-G-------dSlgm~~lG~~~t~~vtldem~~h~~aV~rg~~~~~vv~D 82 (263)
T TIGR00222 18 VAITAYDYSF-------AKLFADAGVDVILV-G-------DSLGMVVLGHDSTLPVTVADMIYHTAAVKRGAPNCLIVTD 82 (263)
T ss_pred EEEeccCHHH-------HHHHHHcCCCEEEE-C-------ccHhHHhcCCCCCCCcCHHHHHHHHHHHHhhCCCceEEeC
Confidence 4777765543 22344679988774 4 223333221 1221 23556777788899999999
Q ss_pred ecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHH-HcCCCeecCCCCCCchHHHHHHHHHHCCCCCceeechhhhh
Q 013861 219 VALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQA-RAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKY 297 (435)
Q Consensus 219 VcLc~YTshGHcGIv~e~g~IdND~Tv~~Lak~Avs~A-~AGADiVAPSDMMDGrVgAIR~aLD~~Gf~~v~IMSYSaKy 297 (435)
+=+-+| + +.|+.+ +-|...- ++|||.|=-.|= ..+..+=++|.+.|. ++|.+
T Consensus 83 mPf~sy---~-----------~~e~a~----~na~rl~~eaGa~aVkiEgg--~~~~~~i~~l~~~gI---pV~gH---- 135 (263)
T TIGR00222 83 LPFMSY---A-----------TPEQAL----KNAARVMQETGANAVKLEGG--EWLVETVQMLTERGV---PVVGH---- 135 (263)
T ss_pred CCcCCC---C-----------CHHHHH----HHHHHHHHHhCCeEEEEcCc--HhHHHHHHHHHHCCC---CEEEe----
Confidence 844433 1 112222 2233333 499999988862 133333378888874 45544
Q ss_pred cccccccchhhhcCCCCCCCc-cccCCCCC---CHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhCC
Q 013861 298 ASSFYGPFREALDSNPRFGDK-KTYQMNPA---NYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYP 373 (435)
Q Consensus 298 ASafYGPFRdA~~Sap~fgDR-ktYQmdp~---N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~~ 373 (435)
++=+|+.-.. -.|..--+ -.+++|+.+..=.+-|||+|. =|+.+ -++++++.++.+
T Consensus 136 -----------iGltPq~a~~~ggy~~qgrt~~~a~~~i~~A~a~e~AGA~~iv--------lE~vp-~~~a~~It~~l~ 195 (263)
T TIGR00222 136 -----------LGLTPQSVNILGGYKVQGKDEEAAKKLLEDALALEEAGAQLLV--------LECVP-VELAAKITEALA 195 (263)
T ss_pred -----------cCCCceeEeecCCeeecCCCHHHHHHHHHHHHHHHHcCCCEEE--------EcCCc-HHHHHHHHHhCC
Confidence 2333331100 01322212 235777777777789999987 46777 799999999999
Q ss_pred CCeEEE
Q 013861 374 LPIAAY 379 (435)
Q Consensus 374 lPvaaY 379 (435)
+|+...
T Consensus 196 iP~iGI 201 (263)
T TIGR00222 196 IPVIGI 201 (263)
T ss_pred CCEEee
Confidence 999653
No 82
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=83.55 E-value=35 Score=31.06 Aligned_cols=179 Identities=22% Similarity=0.253 Sum_probs=93.7
Q ss_pred CCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCC
Q 013861 148 PGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSD 227 (435)
Q Consensus 148 PGv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTsh 227 (435)
|++.-..+. .+.++++.+.+.|+..+=+ ++ -|. .-.-|- .+-...++.|++. ++.-+.+|+-. |
T Consensus 3 ~~~~~~~~~-~~~~~~~~~~~~g~d~i~~-~~-~Dg------~~~~~~-~~~~~~v~~i~~~-~~~~v~v~lm~--~--- 66 (210)
T TIGR01163 3 PSILSADFA-RLGEEVKAVEEAGADWIHV-DV-MDG------HFVPNL-TFGPPVLEALRKY-TDLPIDVHLMV--E--- 66 (210)
T ss_pred chhhcCCHH-HHHHHHHHHHHcCCCEEEE-cC-CCC------CCCCCc-ccCHHHHHHHHhc-CCCcEEEEeee--C---
Confidence 455455554 4889999999999999877 21 110 000011 1445788888864 44332222221 1
Q ss_pred CcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeec-CCCCCCchHHHHHHHHHHCCCCCceeechhhhhcccccccch
Q 013861 228 GHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVS-PSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFR 306 (435)
Q Consensus 228 GHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVA-PSDMMDGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFR 306 (435)
++ ...++ ..+++|||.|- +-+..|-....+ +.+.+.|. ++.++ .
T Consensus 67 -------------~~---~~~~~---~~~~~gadgv~vh~~~~~~~~~~~-~~~~~~g~-~~~~~-~------------- 111 (210)
T TIGR01163 67 -------------NP---DRYIE---DFAEAGADIITVHPEASEHIHRLL-QLIKDLGA-KAGIV-L------------- 111 (210)
T ss_pred -------------CH---HHHHH---HHHHcCCCEEEEccCCchhHHHHH-HHHHHcCC-cEEEE-E-------------
Confidence 11 12233 33489999843 333334333333 45555664 23222 1
Q ss_pred hhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEeccc-----CCCcccCCCchHHHHHHHHhhCC-----CCe
Q 013861 307 EALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSV-----LGSQVKPGLPYLDVIRLLRDKYP-----LPI 376 (435)
Q Consensus 307 dA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~-----~~~~VKPal~YLDIIr~vk~~~~-----lPv 376 (435)
.+.+..|.+++. .+|+|.+.+.. -|... ...-++-|+++++..+ +|+
T Consensus 112 -----------------~~~t~~e~~~~~----~~~~d~i~~~~~~~g~tg~~~--~~~~~~~i~~i~~~~~~~~~~~~i 168 (210)
T TIGR01163 112 -----------------NPATPLEFLEYV----LPDVDLVLLMSVNPGFGGQKF--IPDTLEKIREVRKMIDENGLSILI 168 (210)
T ss_pred -----------------CCCCCHHHHHHH----HhhCCEEEEEEEcCCCCcccc--cHHHHHHHHHHHHHHHhcCCCceE
Confidence 244556666665 35789887421 12111 1234566666665432 566
Q ss_pred EEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEeeh
Q 013861 377 AAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILT 420 (435)
Q Consensus 377 aaYqVSGEYaMikaAa~~G~ide~~~v~Esl~~ikRAGAd~IiT 420 (435)
.+ .|-|+. |.+..+..+|||.|+.
T Consensus 169 ~v---------------~GGI~~-----env~~l~~~gad~iiv 192 (210)
T TIGR01163 169 EV---------------DGGVND-----DNARELAEAGADILVA 192 (210)
T ss_pred EE---------------ECCcCH-----HHHHHHHHcCCCEEEE
Confidence 33 344554 4466677889998764
No 83
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=83.44 E-value=7.3 Score=36.32 Aligned_cols=60 Identities=17% Similarity=0.150 Sum_probs=41.8
Q ss_pred CCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhCCCCeEE
Q 013861 316 GDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAA 378 (435)
Q Consensus 316 gDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~~lPvaa 378 (435)
|+|.+|-....+..|..++.. +.|+|.|-+.-+-..-......+|+|+++++..++|+.+
T Consensus 19 G~~~~~~~~~~dp~~~a~~~~---~~g~d~l~v~dl~~~~~~~~~~~~~i~~i~~~~~~pv~~ 78 (234)
T cd04732 19 GDYDKKTVYSDDPVEVAKKWE---EAGAKWLHVVDLDGAKGGEPVNLELIEEIVKAVGIPVQV 78 (234)
T ss_pred ccCCCCeEECCCHHHHHHHHH---HcCCCEEEEECCCccccCCCCCHHHHHHHHHhcCCCEEE
Confidence 666666445556666666544 379999986655433344566899999999999999653
No 84
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=82.68 E-value=6.8 Score=42.15 Aligned_cols=109 Identities=18% Similarity=0.175 Sum_probs=67.0
Q ss_pred ceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCc
Q 013861 150 CYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGH 229 (435)
Q Consensus 150 v~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTshGH 229 (435)
-|+++.+ .++++++.+.+.|++.+.|.+= .... ..+-..+.++|+.||+.+++-.-+.-|++.
T Consensus 112 r~~Ls~E-EI~~ea~~~~~~G~~~i~LvsG--e~p~-------~~~~eyi~e~i~~I~~~~~~~g~i~~v~in------- 174 (469)
T PRK09613 112 RKKLTQE-EIREEVKALEDMGHKRLALVAG--EDPP-------NCDIEYILESIKTIYSTKHGNGEIRRVNVN------- 174 (469)
T ss_pred ceECCHH-HHHHHHHHHHHCCCCEEEEEeC--CCCC-------CCCHHHHHHHHHHHHHhccccCcceeeEEE-------
Confidence 3788886 6999999999999999999432 1101 122345778999999876533322223332
Q ss_pred ceeecCCCccccHHHHHHHHHHHHHHHHcCCCee------------------cCCCCCCchHHHHHHHHHHCCCCCcee
Q 013861 230 DGIVREDGVIMNDETVHQLCKQAVSQARAGADVV------------------SPSDMMDGRVGAIRAALDAEGFQHVSI 290 (435)
Q Consensus 230 cGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiV------------------APSDMMDGrVgAIR~aLD~~Gf~~v~I 290 (435)
.|.+ +.+.++. +.+||+|.+ .|..--|=|+.+++.+. +.|+.+|++
T Consensus 175 ig~l-------t~eey~~-------LkeaGv~~~~l~qETY~~ety~~~hp~g~k~~y~~Rl~t~~rA~-~aGi~~Vg~ 238 (469)
T PRK09613 175 IAPT-------TVENYKK-------LKEAGIGTYQLFQETYHKPTYEKMHPSGPKSDYDWRLTAMDRAM-EAGIDDVGI 238 (469)
T ss_pred eecC-------CHHHHHH-------HHHcCCCEEEeccccCCHHHHHhcCCCCCCCCHHHHHHHHHHHH-HcCCCeeCe
Confidence 1211 2222222 244555441 35555678999999988 689976544
No 85
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=82.17 E-value=10 Score=40.69 Aligned_cols=50 Identities=16% Similarity=0.098 Sum_probs=38.2
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeec
Q 013861 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVA 220 (435)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVc 220 (435)
+..+.++.+++.|++.+.+=. ++ |- .-.+..+|+.||+.||++.||++-|
T Consensus 225 ~~~~ra~~Lv~aGVd~i~~D~----a~----g~-----~~~~~~~i~~i~~~~~~~~vi~g~~ 274 (475)
T TIGR01303 225 DVGGKAKALLDAGVDVLVIDT----AH----GH-----QVKMISAIKAVRALDLGVPIVAGNV 274 (475)
T ss_pred cHHHHHHHHHHhCCCEEEEeC----CC----CC-----cHHHHHHHHHHHHHCCCCeEEEecc
Confidence 467889999999999977722 11 11 1456789999999999999999844
No 86
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=81.94 E-value=40 Score=30.56 Aligned_cols=52 Identities=13% Similarity=0.237 Sum_probs=32.6
Q ss_pred CCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCC-CHHHHHHHHHHHC
Q 013861 148 PGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNG-LVPRTIWLLKDRY 210 (435)
Q Consensus 148 PGv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g-~v~raIr~iK~~~ 210 (435)
|+++-+.+. .+.+.++.+.+.|++.+-| +. ||.. +.++- +-...++.|++.+
T Consensus 4 ~~~~~~d~~-~~~~~~~~~~~~G~~~i~l-~~-----~d~~----~~~~~~~~~~~~~~i~~~~ 56 (211)
T cd00429 4 PSILSADFA-NLGEELKRLEEAGADWIHI-DV-----MDGH----FVPNLTFGPPVVKALRKHT 56 (211)
T ss_pred eeeecCCHH-HHHHHHHHHHHcCCCEEEE-ec-----ccCC----CCCccccCHHHHHHHHhhC
Confidence 556666664 4889999999999988665 32 3321 11111 2246788888765
No 87
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=81.49 E-value=8.7 Score=39.12 Aligned_cols=169 Identities=15% Similarity=0.185 Sum_probs=99.4
Q ss_pred HHHHHHHHHHcCCCeEEEe-ec----------CCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCC
Q 013861 159 LVQEVAKARDVGVNSVVLF-PK----------VPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSD 227 (435)
Q Consensus 159 l~~~v~~~~~~GI~sv~LF-gv----------i~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTsh 227 (435)
..+-++.+.+.|...|-|- +. ..+.-.|+.|-.--|.--++.+.|+.||++.++=.|..=+...+|...
T Consensus 154 f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg~d~v~vRis~~~~~~~ 233 (338)
T cd02933 154 FRQAARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGADRVGIRLSPFGTFND 233 (338)
T ss_pred HHHHHHHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhCCCceEEEECccccCCC
Confidence 4555667888999999884 32 123467888876667778888999999999864236656665555211
Q ss_pred CcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCCCceeechhhhhcccccccchh
Q 013861 228 GHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFRE 307 (435)
Q Consensus 228 GHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMMDGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRd 307 (435)
+ ..+.|.+...+.+-..+++|+|+|.-|.- +.. ... -.|...+=..+|+
T Consensus 234 ---------~--~~~~~~ee~~~~~~~l~~~g~d~i~vs~g---~~~------------~~~-----~~~~~~~~~~ik~ 282 (338)
T cd02933 234 ---------M--GDSDPEATFSYLAKELNKRGLAYLHLVEP---RVA------------GNP-----EDQPPDFLDFLRK 282 (338)
T ss_pred ---------C--CCCCCHHHHHHHHHHHHHcCCcEEEEecC---CCC------------Ccc-----cccchHHHHHHHH
Confidence 1 11334444555666678889999987542 110 000 0111112222355
Q ss_pred hhcCCCCCCCccccCCCCCCHHHHHHHHHhccccc-ccEEecccCCCcccCCCchHHHHHHHHhhCCCC
Q 013861 308 ALDSNPRFGDKKTYQMNPANYREALVEAQADESEG-ADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLP 375 (435)
Q Consensus 308 A~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EG-ADilM~~~~~~~VKPal~YLDIIr~vk~~~~lP 375 (435)
++ +.|-++.- .++|...+++| +|| ||+|++ -+|.+..=|+++++++.-.+|
T Consensus 283 ~~-~ipvi~~G---~i~~~~a~~~l-------~~g~~D~V~~------gR~~ladP~~~~k~~~g~~~~ 334 (338)
T cd02933 283 AF-KGPLIAAG---GYDAESAEAAL-------ADGKADLVAF------GRPFIANPDLVERLKNGAPLN 334 (338)
T ss_pred Hc-CCCEEEEC---CCCHHHHHHHH-------HcCCCCEEEe------CHhhhhCcCHHHHHhcCCCCC
Confidence 54 34554311 12233333332 344 999992 478888889999999866554
No 88
>PRK00865 glutamate racemase; Provisional
Probab=81.41 E-value=31 Score=33.72 Aligned_cols=151 Identities=17% Similarity=0.171 Sum_probs=86.7
Q ss_pred HHHHHHHHCC--CeEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC---------
Q 013861 202 TIWLLKDRYP--DLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMD--------- 270 (435)
Q Consensus 202 aIr~iK~~~P--dl~IitDVcLc~YTshGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMMD--------- 270 (435)
-++.|++.+| +++-++|..-.|| |.-..++=.+++.+.+-.+.++|||.|.=..--+
T Consensus 20 vl~~i~~~lp~~~~iY~~D~~~~PY------------G~ks~~~i~~~~~~~~~~L~~~g~d~iVIaCNTa~~~~l~~lr 87 (261)
T PRK00865 20 VLREIRRLLPDEHIIYVGDTARFPY------------GEKSEEEIRERTLEIVEFLLEYGVKMLVIACNTASAVALPDLR 87 (261)
T ss_pred HHHHHHHHCCCCCEEEEecCCCCCC------------CCCCHHHHHHHHHHHHHHHHhCCCCEEEEeCchHHHHHHHHHH
Confidence 4678888899 4899999999999 3334455555566666777889999885333322
Q ss_pred --------chHHHHHHHHHHCCCCCceeechhhhhcccccccchhhhcCCCCC---C-----C--ccccCCCCCCHHHHH
Q 013861 271 --------GRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRF---G-----D--KKTYQMNPANYREAL 332 (435)
Q Consensus 271 --------GrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRdA~~Sap~f---g-----D--RktYQmdp~N~~EAl 332 (435)
|-..+++.+....+..+++||+=..--.|.+|.-.-+..+..... . + .... .+-...++.+
T Consensus 88 ~~~~iPvigi~~a~~~a~~~~~~~~igVLaT~~Ti~s~~y~~~i~~~~~~~~v~~~~~~~lv~~ie~g~-~~~~~~~~~l 166 (261)
T PRK00865 88 ERYDIPVVGIVPAIKPAAALTRNGRIGVLATPGTVKSAAYRDLIARFAPDCQVESLACPELVPLVEAGI-LGGPVTLEVL 166 (261)
T ss_pred HhCCCCEEeeHHHHHHHHHhcCCCeEEEEECHHHhhchHHHHHHHHhCCCCEEEEecCHHHHHHHhCCC-cCCHHHHHHH
Confidence 233566666655566889999766655677764222221111100 0 0 0001 1112344556
Q ss_pred HHHHhcc-cccccEEecccCCCcccCCCchHHHHHHHHhhCC
Q 013861 333 VEAQADE-SEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYP 373 (435)
Q Consensus 333 re~~~D~-~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~~ 373 (435)
++....+ ++|+|.|+ ||-. .|--+...+++.++
T Consensus 167 ~~~l~~l~~~g~d~iI---LGCT-----h~p~l~~~i~~~~~ 200 (261)
T PRK00865 167 REYLAPLLAAGIDTLV---LGCT-----HYPLLKPEIQQVLG 200 (261)
T ss_pred HHHHHHHhcCCCCEEE---ECCc-----CHHHHHHHHHHHcC
Confidence 6666665 46999998 4432 33334445555443
No 89
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=81.25 E-value=31 Score=34.81 Aligned_cols=124 Identities=23% Similarity=0.313 Sum_probs=79.2
Q ss_pred cHHHHHHHHHHHHHHHHcCCCeecCCCC-------------------CCchHHHHHHHHHH-CCCCCceeechhhhhccc
Q 013861 241 NDETVHQLCKQAVSQARAGADVVSPSDM-------------------MDGRVGAIRAALDA-EGFQHVSIMSYTAKYASS 300 (435)
Q Consensus 241 ND~Tv~~Lak~Avs~A~AGADiVAPSDM-------------------MDGrVgAIR~aLD~-~Gf~~v~IMSYSaKyASa 300 (435)
|-..+.++++ .++++|+.-|-..|= ++=++..||.+.+. .| .++.|++-+--|.+.
T Consensus 90 ~~~~v~r~V~---~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~~-~~~~IiARTDa~~~~ 165 (285)
T TIGR02320 90 NFEHFRRLVR---KLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKIRAGKDAQTT-EDFMIIARVESLILG 165 (285)
T ss_pred CHHHHHHHHH---HHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHHHHHHHhccC-CCeEEEEeccccccc
Confidence 5555555554 456799977776552 12246777777776 44 578888875533211
Q ss_pred ccccchhhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCC-CchHHHHHHHHhhC-----CC
Q 013861 301 FYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPG-LPYLDVIRLLRDKY-----PL 374 (435)
Q Consensus 301 fYGPFRdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPa-l~YLDIIr~vk~~~-----~l 374 (435)
...+||++.+..=.+-|||+|+ |- + ..-.|-|+++-+.+ ++
T Consensus 166 -------------------------~~~~eAi~Ra~ay~eAGAD~if-------v~-~~~~~~~ei~~~~~~~~~~~p~~ 212 (285)
T TIGR02320 166 -------------------------KGMEDALKRAEAYAEAGADGIM-------IH-SRKKDPDEILEFARRFRNHYPRT 212 (285)
T ss_pred -------------------------CCHHHHHHHHHHHHHcCCCEEE-------ec-CCCCCHHHHHHHHHHhhhhCCCC
Confidence 1368999999999999999999 74 3 35567777776665 46
Q ss_pred CeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEeeh
Q 013861 375 PIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILT 420 (435)
Q Consensus 375 PvaaYqVSGEYaMikaAa~~G~ide~~~v~Esl~~ikRAGAd~IiT 420 (435)
|+.+ +.|+| +.+ ++..+..+|.+.|+.
T Consensus 213 pl~~--~~~~~---------~~~--------~~~eL~~lG~~~v~~ 239 (285)
T TIGR02320 213 PLVI--VPTSY---------YTT--------PTDEFRDAGISVVIY 239 (285)
T ss_pred CEEE--ecCCC---------CCC--------CHHHHHHcCCCEEEE
Confidence 8863 23433 222 345566778888654
No 90
>TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family. This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth.
Probab=81.07 E-value=7.3 Score=37.69 Aligned_cols=76 Identities=30% Similarity=0.415 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHcCCCeecCC-----CC-CCc--hHHHHHHHHHHCCCCCceeechhhhhcccccccchhhhcCCCCCCCc
Q 013861 247 QLCKQAVSQARAGADVVSPS-----DM-MDG--RVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDK 318 (435)
Q Consensus 247 ~Lak~Avs~A~AGADiVAPS-----DM-MDG--rVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRdA~~Sap~fgDR 318 (435)
.-..||+.-|+||||.|||= |. -|| .|..|++.++..|+ ++.||+=|.|
T Consensus 110 fs~~Qa~~Aa~aGa~yispyvgRi~d~g~dg~~~v~~~~~~~~~~~~-~tkIlaAS~r---------------------- 166 (213)
T TIGR00875 110 FSAAQALLAAKAGATYVSPFVGRLDDIGGDGMKLIEEVKTIFENHAP-DTEVIAASVR---------------------- 166 (213)
T ss_pred cCHHHHHHHHHcCCCEEEeecchHHHcCCCHHHHHHHHHHHHHHcCC-CCEEEEeccC----------------------
Confidence 34679999999999999992 11 132 35677778877776 6777765543
Q ss_pred cccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHH
Q 013861 319 KTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLR 369 (435)
Q Consensus 319 ktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk 369 (435)
|..+.+..++. |+|.+- +- .||+.++.
T Consensus 167 --------~~~~v~~~~~~----G~d~vT-------ip-----~~vl~~l~ 193 (213)
T TIGR00875 167 --------HPRHVLEAALI----GADIAT-------MP-----LDVMQQLF 193 (213)
T ss_pred --------CHHHHHHHHHc----CCCEEE-------cC-----HHHHHHHH
Confidence 66776655544 999998 43 46777763
No 91
>PF01177 Asp_Glu_race: Asp/Glu/Hydantoin racemase; InterPro: IPR015942 This entry represents a group of related proteins that includes aspartate racemase, glutamate racemase, hydantoin racemase and arylmalonate decarboxylase. Aspartate racemase (5.1.1.13 from EC) and glutamate racemase (5.1.1.3 from EC) are two evolutionary related bacterial enzymes that do not seem to require a cofactor for their activity []. Glutamate racemase, which interconverts L-glutamate into D-glutamate, is required for the biosynthesis of peptidoglycan and some peptide-based antibiotics such as gramicidin S. In addition to characterised aspartate and glutamate racemases, this family also includes a hypothetical protein from Erwinia carotovora and one from Escherichia coli (ygeA). Two conserved cysteines are present in the sequence of these enzymes. They are expected to play a role in catalytic activity by acting as bases in proton abstraction from the substrate.; PDB: 3S7Z_A 3S81_C 3OUT_A 3EIS_B 3IXL_A 3IP8_A 2VLB_D 3DTV_A 3IXM_A 3DG9_A ....
Probab=81.00 E-value=1.8 Score=39.31 Aligned_cols=159 Identities=24% Similarity=0.326 Sum_probs=91.0
Q ss_pred HHHHHHHCCC----eEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC-chHHHHH
Q 013861 203 IWLLKDRYPD----LVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMD-GRVGAIR 277 (435)
Q Consensus 203 Ir~iK~~~Pd----l~IitDVcLc~YTshGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMMD-GrVgAIR 277 (435)
.+.|.+.+|. .+.+.|.+-.| .-.... ++. .++-.+.+.+.+-..+++|+|+|.=...-+ --+..+|
T Consensus 13 ~~~l~~~~~~~~~~~v~~~~~~~~p---~~~~~~---~~~--~~~~~~~~~~~~~~l~~~g~d~i~i~C~s~~~~~~~~~ 84 (216)
T PF01177_consen 13 ERELRRMLPAREGQEVYFHDTRGFP---DRIKEE---DAG--MSAILDRLIEAAEKLEKAGVDAIVIACNSAHPFVDELR 84 (216)
T ss_dssp HHHHHHHSTTSCCTEEEEEETTTSC---TSHHHH---HHH--HHHHHHHHHHHHHHHHHTTESEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCEEEEEeCCCCC---CccHHH---hcc--hHHHHHHHHHHHHHHHhCCCCEEEEcCCchhhhHHHHh
Confidence 4667777776 67777776222 101111 001 011233677777788889999998777666 3344444
Q ss_pred -H---------------HHHHCCCCCceeec-hhhhhcccccccchhhhcCCCCC--C-Ccc------ccCCCCCCHHHH
Q 013861 278 -A---------------ALDAEGFQHVSIMS-YTAKYASSFYGPFREALDSNPRF--G-DKK------TYQMNPANYREA 331 (435)
Q Consensus 278 -~---------------aLD~~Gf~~v~IMS-YSaKyASafYGPFRdA~~Sap~f--g-DRk------tYQmdp~N~~EA 331 (435)
+ ++.+ |.++++|++ |...-...|-.-|++..+-...+ + .+. .-+.++. ..+.
T Consensus 85 ~~~~~iPv~~~~~a~~~~~~~-~~~ri~vl~t~~~~~~~~~~~~~~~~~gi~~~~~~~i~~~~~~~~e~~~~~~~-~~~~ 162 (216)
T PF01177_consen 85 KERVGIPVVGIVEAALEAAKA-GGKRIGVLTTYTTEKSPLYEEFIEEAAGIDDEVVAGIHNAIYDVIELGDIPPE-QIEI 162 (216)
T ss_dssp HHHHSSEEEESHHHHHHHHHH-TSSEEEEEESHHHHHHTHHHHHHHHCTTEECEEEEEEEEEHTHHHHTTCTTHH-HHHH
T ss_pred hhcCceEEEeccHHHHHHHHh-cCCEEEEEecCcccchHHHHHHHHHhcCCcHHHHHHHHhhcHHHHhhhcCCHH-HHHH
Confidence 2 2334 889999999 86654433333333332210000 0 011 1123333 4555
Q ss_pred HHHHHhcc--cccccEEecccCCCcccCCCchH-HHHHHHHhhCCCCeE
Q 013861 332 LVEAQADE--SEGADILLFSVLGSQVKPGLPYL-DVIRLLRDKYPLPIA 377 (435)
Q Consensus 332 lre~~~D~--~EGADilM~~~~~~~VKPal~YL-DIIr~vk~~~~lPva 377 (435)
+.++...+ +.|+|.|+ ||. -.|+++ +.+..+.+..++||.
T Consensus 163 ~~~~~~~l~~~~~~d~ii---LgC---t~l~~~~~~~~~l~~~~gipVi 205 (216)
T PF01177_consen 163 LAEAARELIKEDGADAII---LGC---THLPLLLGAIEALEEELGIPVI 205 (216)
T ss_dssp HHHHHHHHHHCTTSSEEE---EES---TTGGGGHHHHHHHHHTCSSEEE
T ss_pred HHHHHHHHhccCCCCEEE---ECC---CchHHHHHHHHhhcccCCCEEE
Confidence 66666655 89999999 332 356777 999999998899974
No 92
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=80.80 E-value=20 Score=43.07 Aligned_cols=170 Identities=23% Similarity=0.269 Sum_probs=107.7
Q ss_pred HHHHHHHHHHHHHHHHcC-CCeecCCC-CCCchHHHHHHHHHHCCCCCceeechhhhhcccccccchhhhcCCCC-CCCc
Q 013861 242 DETVHQLCKQAVSQARAG-ADVVSPSD-MMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPR-FGDK 318 (435)
Q Consensus 242 D~Tv~~Lak~Avs~A~AG-ADiVAPSD-MMDGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRdA~~Sap~-fgDR 318 (435)
|.|-+.+++++..+++.| +.||.=.. ---=.|.+|+++|+..--...+ ...-...+|-|.|+.=--++.+- .|.|
T Consensus 288 d~tPe~~a~~~~~~~~~G~v~IIGGCCGTtPeHI~ala~~l~~~~p~~~~--~~~~~~~~S~~~~~~~~~~~~~~~IGER 365 (1229)
T PRK09490 288 DETPEEMAAQIGEFAESGFLNIVGGCCGTTPEHIAAIAEAVAGLPPRKLP--EIPVACRLSGLEPLNIDDDSLFVNVGER 365 (1229)
T ss_pred CCCHHHHHHHHHHHHHcCCCCEEEecCCCCHHHHHHHHHHHhcCCCCCCC--CcCcceeeecceEEeecCCCcccccccc
Confidence 346678999999999999 89886432 2223899999999754332211 11111245555555422222222 2322
Q ss_pred -------ccc-CCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCch----------HHHHHHHHhhCCCCeEEEE
Q 013861 319 -------KTY-QMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPY----------LDVIRLLRDKYPLPIAAYQ 380 (435)
Q Consensus 319 -------ktY-Qmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~Y----------LDIIr~vk~~~~lPvaaYq 380 (435)
+=. .+--.+.++|+..+..-+++|||||= |=++.+. +.+|+.+++.+++|+..=
T Consensus 366 ~N~~G~k~~~~~i~~~d~~~al~~A~~qve~GA~iID-------Vn~g~~~id~~eem~rvv~~i~~~~~~~~vPlsID- 437 (1229)
T PRK09490 366 TNVTGSAKFARLIKEEDYDEALDVARQQVENGAQIID-------INMDEGMLDSEAAMVRFLNLIASEPDIARVPIMID- 437 (1229)
T ss_pred cchhccHHHHHHHHcCCHHHHHHHHHHHHHCCCCEEE-------ECCCCCCCCHHHHHHHHHHHHHhhhccCCceEEEe-
Confidence 211 13446788999999999999999999 7777655 344444445567887532
Q ss_pred echHHHHHHHHHHC--C--CCc------hhhHHHHHHHHHHHhcccEeehhc
Q 013861 381 VSGEYSMIKAGGAL--K--MID------EQRVMMESLMCLRRAGADIILTYF 422 (435)
Q Consensus 381 VSGEYaMikaAa~~--G--~id------e~~~v~Esl~~ikRAGAd~IiTYf 422 (435)
|=....+++|.+. | +|| .+.-+.|.+.-+++-||.+|+..+
T Consensus 438 -S~~~~ViEaaLk~~~G~~IINSIs~~~~~~~~~~~~~l~~kyga~vV~m~~ 488 (1229)
T PRK09490 438 -SSKWEVIEAGLKCIQGKGIVNSISLKEGEEKFIEHARLVRRYGAAVVVMAF 488 (1229)
T ss_pred -CCcHHHHHHHHhhcCCCCEEEeCCCCCCCccHHHHHHHHHHhCCCEEEEec
Confidence 5567788888765 2 222 122345677789999999999887
No 93
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=80.64 E-value=9.6 Score=37.36 Aligned_cols=125 Identities=20% Similarity=0.296 Sum_probs=72.7
Q ss_pred hHHHhhhhcCCCCCCCceeeEEEeeCCCCcccCCCCCceeech-hhhHHHHHHHHHHcCCCeEEEeecCCCCCCCc-ccC
Q 013861 113 PAMRASFQETNLSPANFVYPLFIHEGEEDTPIGAMPGCYRLGW-RHGLVQEVAKARDVGVNSVVLFPKVPDALKSP-TGD 190 (435)
Q Consensus 113 ~~~R~l~~Et~L~~~~LI~PlFV~eg~~~~~I~sMPGv~r~s~-~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~-~Gs 190 (435)
..+|++.+-+. .|+.|.-+.. |+- -..+...|+++.+.|+-.+.| .|. |+. .+.
T Consensus 59 ~~~~~I~~~~~-------iPv~vD~d~G------------yG~~~~~v~~tv~~~~~aG~agi~I----EDq-~~~~~~~ 114 (238)
T PF13714_consen 59 AAVRRIARAVS-------IPVIVDADTG------------YGNDPENVARTVRELERAGAAGINI----EDQ-RCGHGGK 114 (238)
T ss_dssp HHHHHHHHHSS-------SEEEEE-TTT------------SSSSHHHHHHHHHHHHHCT-SEEEE----ESB-STTTSTT
T ss_pred HHHHHHHhhhc-------CcEEEEcccc------------cCchhHHHHHHHHHHHHcCCcEEEe----ecc-ccCCCCC
Confidence 34566655554 7988874443 111 124888999999999999887 232 322 111
Q ss_pred cCcCCCCCHHHHHHHHHHHC--CCeEEEe--eecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCC
Q 013861 191 EAYNDNGLVPRTIWLLKDRY--PDLVIYT--DVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPS 266 (435)
Q Consensus 191 ~A~~~~g~v~raIr~iK~~~--Pdl~Iit--DVcLc~YTshGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPS 266 (435)
... +-.-...=||+.++.- ++++|++ |..+. +...++.-.+-+..|++||||+|-+-
T Consensus 115 ~l~-~~ee~~~kI~Aa~~a~~~~~~~I~ARTDa~~~------------------~~~~~deaI~R~~aY~eAGAD~ifi~ 175 (238)
T PF13714_consen 115 QLV-SPEEMVAKIRAAVDARRDPDFVIIARTDAFLR------------------AEEGLDEAIERAKAYAEAGADMIFIP 175 (238)
T ss_dssp -B---HHHHHHHHHHHHHHHSSTTSEEEEEECHHCH------------------HHHHHHHHHHHHHHHHHTT-SEEEET
T ss_pred cee-CHHHHHHHHHHHHHhccCCeEEEEEecccccc------------------CCCCHHHHHHHHHHHHHcCCCEEEeC
Confidence 122 1111223355555443 6788875 33222 44555555666789999999999988
Q ss_pred CCCC-chHHHHHHHH
Q 013861 267 DMMD-GRVGAIRAAL 280 (435)
Q Consensus 267 DMMD-GrVgAIR~aL 280 (435)
.+.+ ..|..+.+.+
T Consensus 176 ~~~~~~~i~~~~~~~ 190 (238)
T PF13714_consen 176 GLQSEEEIERIVKAV 190 (238)
T ss_dssp TSSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhc
Confidence 8775 4677777777
No 94
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=80.45 E-value=93 Score=34.59 Aligned_cols=196 Identities=19% Similarity=0.205 Sum_probs=112.0
Q ss_pred CCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeee---cccC
Q 013861 147 MPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDV---ALDP 223 (435)
Q Consensus 147 MPGv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDV---cLc~ 223 (435)
.++..|++.+ ..+..++.+.+.|+.++=+.|- +.-|. +.-|-...+ -..++.|++..|+..+.+=. .+..
T Consensus 17 s~~atr~~t~-d~l~ia~~l~~~G~~~iE~~gg---atfd~--~~rfl~edp-~e~l~~l~~~~~~~~l~~l~Rg~N~~g 89 (592)
T PRK09282 17 SLLATRMRTE-DMLPIAEKLDKVGFWSLEVWGG---ATFDV--CIRYLNEDP-WERLRKLKKALPNTPLQMLLRGQNLVG 89 (592)
T ss_pred ccCCccCCHH-HHHHHHHHHHHcCCCEEEecCC---ccchh--hcccCCccH-HHHHHHHHHhCCCCEEEEEeccccccc
Confidence 4555678875 5899999999999999988652 11111 001222233 45789999999986654321 1222
Q ss_pred CCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCC---CchHHHHHHHHHHCCCCCceeechhhhhccc
Q 013861 224 YSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMM---DGRVGAIRAALDAEGFQHVSIMSYTAKYASS 300 (435)
Q Consensus 224 YTshGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMM---DGrVgAIR~aLD~~Gf~~v~IMSYSaKyASa 300 (435)
|+. --|..++..++.|. ++|.|+|--.|-+ +.-..+|+.+- +.|+.-..-++|+.
T Consensus 90 y~~-------------ypd~vv~~~v~~A~---~~Gvd~irif~~lnd~~n~~~~i~~ak-~~G~~v~~~i~~t~----- 147 (592)
T PRK09282 90 YRH-------------YPDDVVEKFVEKAA---ENGIDIFRIFDALNDVRNMEVAIKAAK-KAGAHVQGTISYTT----- 147 (592)
T ss_pred ccc-------------ccchhhHHHHHHHH---HCCCCEEEEEEecChHHHHHHHHHHHH-HcCCEEEEEEEecc-----
Confidence 211 12344555556653 6799976544333 34444555443 56774445567753
Q ss_pred ccccchhhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhCCCCeEEEE
Q 013861 301 FYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAAYQ 380 (435)
Q Consensus 301 fYGPFRdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~~lPvaaYq 380 (435)
+|+ .++...-+-.+++ ++-|||.|-+.--....+|.. .-++++.+|+.+++|+ .+|
T Consensus 148 --~p~-----------------~t~~~~~~~a~~l---~~~Gad~I~i~Dt~G~~~P~~-~~~lv~~lk~~~~~pi-~~H 203 (592)
T PRK09282 148 --SPV-----------------HTIEKYVELAKEL---EEMGCDSICIKDMAGLLTPYA-AYELVKALKEEVDLPV-QLH 203 (592)
T ss_pred --CCC-----------------CCHHHHHHHHHHH---HHcCCCEEEECCcCCCcCHHH-HHHHHHHHHHhCCCeE-EEE
Confidence 221 1333333433333 245999998554444556664 3689999999999987 455
Q ss_pred ech----HHHHHHHHHHCC
Q 013861 381 VSG----EYSMIKAGGALK 395 (435)
Q Consensus 381 VSG----EYaMikaAa~~G 395 (435)
--- -.+-..+|.++|
T Consensus 204 ~Hnt~Gla~An~laAv~aG 222 (592)
T PRK09282 204 SHCTSGLAPMTYLKAVEAG 222 (592)
T ss_pred EcCCCCcHHHHHHHHHHhC
Confidence 421 223344466666
No 95
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=80.44 E-value=8.2 Score=34.08 Aligned_cols=61 Identities=28% Similarity=0.378 Sum_probs=42.3
Q ss_pred cccccEEecccC-CCcccCCC---chHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcc
Q 013861 340 SEGADILLFSVL-GSQVKPGL---PYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGA 415 (435)
Q Consensus 340 ~EGADilM~~~~-~~~VKPal---~YLDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G~ide~~~v~Esl~~ikRAGA 415 (435)
+.|+|+|+++-+ -+.-||+. .-++.++++++..++||.+ .|-++. |.+..++++||
T Consensus 113 ~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~a---------------~GGi~~-----~~i~~~~~~Ga 172 (196)
T cd00564 113 ELGADYVGFGPVFPTPTKPGAGPPLGLELLREIAELVEIPVVA---------------IGGITP-----ENAAEVLAAGA 172 (196)
T ss_pred hcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhCCCCEEE---------------ECCCCH-----HHHHHHHHcCC
Confidence 469999986532 33345542 3488999999888899876 356664 35667778899
Q ss_pred cEeeh
Q 013861 416 DIILT 420 (435)
Q Consensus 416 d~IiT 420 (435)
|.|..
T Consensus 173 ~~i~~ 177 (196)
T cd00564 173 DGVAV 177 (196)
T ss_pred CEEEE
Confidence 98753
No 96
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=80.29 E-value=6.8 Score=37.77 Aligned_cols=60 Identities=22% Similarity=0.284 Sum_probs=44.0
Q ss_pred cccccEEecccCCCcccCCCch--HHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccE
Q 013861 340 SEGADILLFSVLGSQVKPGLPY--LDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADI 417 (435)
Q Consensus 340 ~EGADilM~~~~~~~VKPal~Y--LDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G~ide~~~v~Esl~~ikRAGAd~ 417 (435)
+.|||.|.|+-+-+.-||..+- ++.++.+++.+++||.|- |-|+. |.+..++++||+.
T Consensus 129 ~~gaDYv~~Gpv~t~tK~~~~p~gl~~l~~~~~~~~iPvvAI---------------GGI~~-----~n~~~~~~~GA~g 188 (221)
T PRK06512 129 ELRPDYLFFGKLGADNKPEAHPRNLSLAEWWAEMIEIPCIVQ---------------AGSDL-----ASAVEVAETGAEF 188 (221)
T ss_pred hcCCCEEEECCCCCCCCCCCCCCChHHHHHHHHhCCCCEEEE---------------eCCCH-----HHHHHHHHhCCCE
Confidence 5899999977665455665332 889999999999999873 54554 4455677889987
Q ss_pred ee
Q 013861 418 IL 419 (435)
Q Consensus 418 Ii 419 (435)
|-
T Consensus 189 iA 190 (221)
T PRK06512 189 VA 190 (221)
T ss_pred EE
Confidence 63
No 97
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=80.10 E-value=11 Score=40.43 Aligned_cols=227 Identities=19% Similarity=0.186 Sum_probs=126.8
Q ss_pred CCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCC
Q 013861 147 MPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSS 226 (435)
Q Consensus 147 MPGv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTs 226 (435)
..|..+|+- +-+.+.++.+.+.|+..|-+|-.+.+. . -+.++|+..|+..- .+-+|+| ||.
T Consensus 87 ~~G~~~~pd-dvv~~~v~~A~~~Gvd~irif~~lnd~---------~----n~~~~v~~ak~~G~----~v~~~i~-~t~ 147 (448)
T PRK12331 87 LLGYRNYAD-DVVESFVQKSVENGIDIIRIFDALNDV---------R----NLETAVKATKKAGG----HAQVAIS-YTT 147 (448)
T ss_pred ccccccCch-hhHHHHHHHHHHCCCCEEEEEEecCcH---------H----HHHHHHHHHHHcCC----eEEEEEE-eec
Confidence 788888874 347788999999999999998654331 1 16778999888743 2233342 332
Q ss_pred CCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC--------chHHHHHHHHHH-CCC--CCceeechhh
Q 013861 227 DGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMD--------GRVGAIRAALDA-EGF--QHVSIMSYTA 295 (435)
Q Consensus 227 hGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMMD--------GrVgAIR~aLD~-~Gf--~~v~IMSYSa 295 (435)
. .. -|++.+.+.|-...++|||.|+=.||.= -.|.+||+.++- -++ +|+.=|+-+.
T Consensus 148 ~----------p~---~~~~~~~~~a~~l~~~Gad~I~i~Dt~G~l~P~~v~~lv~alk~~~~~pi~~H~Hnt~GlA~AN 214 (448)
T PRK12331 148 S----------PV---HTIDYFVKLAKEMQEMGADSICIKDMAGILTPYVAYELVKRIKEAVTVPLEVHTHATSGIAEMT 214 (448)
T ss_pred C----------CC---CCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCCcHHHH
Confidence 1 11 3556666666667889999999999975 356667766520 011 3444455555
Q ss_pred hhcccccccchhhhcCCC-CCCCccccCCCCCCHH-HHHHHHHh--cccccccEEecccCCCcccCCCchHHHHHHHHhh
Q 013861 296 KYASSFYGPFREALDSNP-RFGDKKTYQMNPANYR-EALVEAQA--DESEGADILLFSVLGSQVKPGLPYLDVIRLLRDK 371 (435)
Q Consensus 296 KyASafYGPFRdA~~Sap-~fgDRktYQmdp~N~~-EAlre~~~--D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~ 371 (435)
-.+..-.|- |.++++- .||.+. +|.. |.+..+.. ..+-|-|+=. +... -+.++++++.
T Consensus 215 ~laAieaGa--d~vD~sv~glg~ga------GN~~tE~lv~~L~~~g~~tgidl~~-------L~~~---~~~~~~~r~~ 276 (448)
T PRK12331 215 YLKAIEAGA--DIIDTAISPFAGGT------SQPATESMVAALQDLGYDTGLDLEE-------LSEI---AEYFNPIRDH 276 (448)
T ss_pred HHHHHHcCC--CEEEeeccccCCCc------CCHhHHHHHHHHHhcCCCCCCCHHH-------HHHH---HHHHHHHHHH
Confidence 455555552 2233333 245441 2222 33333332 2333444333 3222 3344555554
Q ss_pred C----CCC---------eEEEEec-hHHHHHHH-HHHCCCCchhhHHHHHHHHHHHhcccEe-ehhcH
Q 013861 372 Y----PLP---------IAAYQVS-GEYSMIKA-GGALKMIDEQRVMMESLMCLRRAGADII-LTYFA 423 (435)
Q Consensus 372 ~----~lP---------vaaYqVS-GEYaMika-Aa~~G~ide~~~v~Esl~~ikRAGAd~I-iTYfA 423 (435)
+ .+| |--||+= |-|+-++. +.+.|..|.=.-|+|-+-..++-.-+.| +|=+.
T Consensus 277 y~~~~~~~~~~~~~~~~v~~~~~PGG~~snl~~ql~~~g~~~~~~~v~~e~~~v~~~lG~~~~VTP~S 344 (448)
T PRK12331 277 YREEGILNPKVKDVEPKTLIYQVPGGMLSNLLSQLKEQGAEDKYEEVLKEVPKVRADLGYPPLVTPLS 344 (448)
T ss_pred HHhhccCCcccccCCcCeeecCCCcchHhHHHHHHHHCCcHhHHHHHHHHHHHHHHHcCCCCeeCChh
Confidence 4 133 4556663 45655444 6778888865555555555555555555 55443
No 98
>TIGR03332 salvage_mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate enolase. Members of this family are the methionine salvage pathway enzyme 2,3-diketo-5-methylthiopentyl-1-phosphate enolase, a homolog of RuBisCO. This protein family seems restricted to Bacillus subtilis and close relatives, where two separate proteins carry the enolase and phosphatase activities that in other species occur in a single protein, MtnC (TIGR01691).
Probab=80.07 E-value=5.1 Score=42.49 Aligned_cols=138 Identities=24% Similarity=0.263 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHHHHHcCCCeec--------CCCCCCchHHHHHHHHHHCCCCCceeechhhhhcccccccchhhhcCCC
Q 013861 242 DETVHQLCKQAVSQARAGADVVS--------PSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNP 313 (435)
Q Consensus 242 D~Tv~~Lak~Avs~A~AGADiVA--------PSDMMDGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRdA~~Sap 313 (435)
=.|.+++++++..++..|.|+|= |..=++-||.++.++++++. +
T Consensus 151 Gl~~~~~A~~~y~~~~GGvD~IKDDE~l~dq~~~p~~~Rv~~~~~a~~~a~-------------------------~--- 202 (407)
T TIGR03332 151 GRDLGYLKEQLRQQALGGVDLVKDDEILFETGLAPFEKRITEGKEVLQEVY-------------------------E--- 202 (407)
T ss_pred CCCHHHHHHHHHHHhccCcccccCCCCCCCCCCCCHHHHHHHHHHHHHHHH-------------------------H---
Confidence 45778999999999999999983 23334455555555554432 1
Q ss_pred CCCCccccCCCCCCH-HHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHh--hCCCCeEEEEechHHHHHHH
Q 013861 314 RFGDKKTYQMNPANY-REALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRD--KYPLPIAAYQVSGEYSMIKA 390 (435)
Q Consensus 314 ~fgDRktYQmdp~N~-~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~--~~~lPvaaYqVSGEYaMika 390 (435)
.-|.|+-|-+|.... .|.++.++.=.++|++++| |-|...=++.++.+++ .+++|+ -+|=.|-=++..
T Consensus 203 eTG~~~~y~~NiT~~~~em~~ra~~a~~~G~~~~m-------v~~~~~G~~~~~~l~~~~~~~lpi-haHra~~ga~~r- 273 (407)
T TIGR03332 203 QTGHKTLYAVNLTGRTFDLKDKAKRAAELGADVLL-------FNVFAYGLDVLQSLAEDDEIPVPI-MAHPAVSGAYTS- 273 (407)
T ss_pred HHCCcceEeecCCCCHHHHHHHHHHHHHhCCCEEE-------EeccccChHHHHHHHhcCCCCcEE-EEecCccccccc-
Confidence 127788888887654 6777778777889999999 9998777999999998 568898 334322111111
Q ss_pred HHHCCCCchhhHHHHHHHHHHHhcccEeeh
Q 013861 391 GGALKMIDEQRVMMESLMCLRRAGADIILT 420 (435)
Q Consensus 391 Aa~~G~ide~~~v~Esl~~ikRAGAd~IiT 420 (435)
.-..|+ +. ..++=. -+|-||||.|++
T Consensus 274 ~~~~Gi-s~-~~~l~k--l~RLaGaD~~~~ 299 (407)
T TIGR03332 274 SPFYGF-SH-SLLLGK--LLRYAGADFSLF 299 (407)
T ss_pred CCCCcc-cH-HHHHHH--HHHhcCcCcccc
Confidence 112233 11 122322 356699999986
No 99
>cd08209 RLP_DK-MTP-1-P-enolase 2,3-diketo-5-methylthiopentyl-1-phosphate enolase. Ribulose bisphosphate carboxylase like proteins (RLPs) similar to B. subtilis YkrW protein, have been identified as 2,3-diketo-5-methylthiopentyl-1-phosphate enolases. They catalyze the tautomerization of 2,3-diketo-5-methylthiopentane 1-phosphate (DK-MTP 1-P). This is an important step in the methionine salvage pathway in which 5-methylthio-D-ribose (MTR) derived from 5'-methylthioadenosine is converted to methionine.
Probab=79.94 E-value=5 Score=42.32 Aligned_cols=136 Identities=24% Similarity=0.281 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHHHHcCCCeecCCC--------CCCchHHHHHHHHHHCCCCCceeechhhhhcccccccchhhhcCCCC
Q 013861 243 ETVHQLCKQAVSQARAGADVVSPSD--------MMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPR 314 (435)
Q Consensus 243 ~Tv~~Lak~Avs~A~AGADiVAPSD--------MMDGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRdA~~Sap~ 314 (435)
-|-+.+++++-.++..|.|+|==-. =+.=||.++.+++++.. + .
T Consensus 137 lsp~~~a~~~y~~~~GGvD~IKDDE~l~~q~~~p~~eRv~a~~~a~~~a~-------------------------~---e 188 (391)
T cd08209 137 LDLDDLAEQLREQALGGVDLIKDDEILFDNPLAPALERIRACRPVLQEVY-------------------------E---Q 188 (391)
T ss_pred CCHHHHHHHHHHHHhCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHH-------------------------H---h
Confidence 4678899999999999999873211 12344554444444331 1 1
Q ss_pred CCCccccCCCCC-CHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHh--hCCCCeEEE-EechHHHHHHH
Q 013861 315 FGDKKTYQMNPA-NYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRD--KYPLPIAAY-QVSGEYSMIKA 390 (435)
Q Consensus 315 fgDRktYQmdp~-N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~--~~~lPvaaY-qVSGEYaMika 390 (435)
-|-|+-|-.|.. ...|.++.++.=.++|++++| |-|...=+|.++.+++ .++|||-+- ..+|-|. .
T Consensus 189 TG~~~~ya~NiT~~~~em~~ra~~~~~~G~~~~m-------v~~~~~G~~~l~~l~~~~~~~lpIhaHra~~ga~~---~ 258 (391)
T cd08209 189 TGRRTLYAVNLTGPVFTLKEKARRLVEAGANALL-------FNVFAYGLDVLEALASDPEINVPIFAHPAFAGALY---G 258 (391)
T ss_pred hCCcceEEEEcCCCHHHHHHHHHHHHHhCCCEEE-------EeccccchHHHHHHHhcCcCCcEEEecCCcccccc---c
Confidence 266777777764 356777778888889999999 9997666999999998 568888742 2233221 0
Q ss_pred HHHCCCCchhhHHHHHHHHHHHhcccEeeh
Q 013861 391 GGALKMIDEQRVMMESLMCLRRAGADIILT 420 (435)
Q Consensus 391 Aa~~G~ide~~~v~Esl~~ikRAGAd~IiT 420 (435)
.-..|+ +. ..++=. -+|-||||.+++
T Consensus 259 ~~~~Gi-s~-~~~l~k--l~RLaGaD~~~~ 284 (391)
T cd08209 259 SPDYGI-AA-SVLLGT--LMRLAGADAVLF 284 (391)
T ss_pred CCCCCC-cH-HHHHHH--HHHHcCCCcccc
Confidence 112233 11 123333 356699999975
No 100
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=79.89 E-value=18 Score=36.33 Aligned_cols=95 Identities=14% Similarity=0.274 Sum_probs=65.8
Q ss_pred hHHHHHHHHHHcCCCeEEEeec-----------CCCCCCCcccCcCcCCCCCHHHHHHHHHHHCC-CeEEEeeecccCCC
Q 013861 158 GLVQEVAKARDVGVNSVVLFPK-----------VPDALKSPTGDEAYNDNGLVPRTIWLLKDRYP-DLVIYTDVALDPYS 225 (435)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgv-----------i~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~P-dl~IitDVcLc~YT 225 (435)
...+.++.+.+.|...|-|-+- ..+...|+.|..-.|.--++...++.|++.++ |..|..|+...+|.
T Consensus 155 ~~~~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~d~~v~vri~~~~~~ 234 (336)
T cd02932 155 AFVAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPEDKPLFVRISATDWV 234 (336)
T ss_pred HHHHHHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEEcccccC
Confidence 4566677788999999988531 12345778887777777788899999999994 89999998865542
Q ss_pred CCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCC
Q 013861 226 SDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPS 266 (435)
Q Consensus 226 shGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPS 266 (435)
++| .+-+++ .+.+-...++|.|+|.-|
T Consensus 235 ---------~~g-~~~~e~----~~ia~~Le~~gvd~iev~ 261 (336)
T cd02932 235 ---------EGG-WDLEDS----VELAKALKELGVDLIDVS 261 (336)
T ss_pred ---------CCC-CCHHHH----HHHHHHHHHcCCCEEEEC
Confidence 112 222333 344444567899999754
No 101
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=79.79 E-value=7.8 Score=42.67 Aligned_cols=219 Identities=18% Similarity=0.135 Sum_probs=123.1
Q ss_pred hhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecC
Q 013861 156 RHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVRE 235 (435)
Q Consensus 156 ~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTshGHcGIv~e 235 (435)
++-+.+.++.+.+.|+..|-+|-.+.+. --+.++|+..|+.--.+.+.-....|||
T Consensus 90 ddvv~~~v~~a~~~Gvd~irif~~lnd~-------------~n~~~~i~~ak~~G~~v~~~i~~t~~p~----------- 145 (582)
T TIGR01108 90 DDVVERFVKKAVENGMDVFRIFDALNDP-------------RNLQAAIQAAKKHGAHAQGTISYTTSPV----------- 145 (582)
T ss_pred hhhHHHHHHHHHHCCCCEEEEEEecCcH-------------HHHHHHHHHHHHcCCEEEEEEEeccCCC-----------
Confidence 3335668899999999999998543321 1277899999888543332111113443
Q ss_pred CCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCc--------hHHHHHHHHHH-CCC--CCceeechhhhhccccccc
Q 013861 236 DGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDG--------RVGAIRAALDA-EGF--QHVSIMSYTAKYASSFYGP 304 (435)
Q Consensus 236 ~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMMDG--------rVgAIR~aLD~-~Gf--~~v~IMSYSaKyASafYGP 304 (435)
-|++.+.+.+-...++|||.|+-.||.=. .|.+||+.++- -|+ +|+.=|+-+.-.+..-.|-
T Consensus 146 -------~~~~~~~~~~~~~~~~Gad~I~i~Dt~G~~~P~~v~~lv~~lk~~~~~pi~~H~Hnt~Gla~An~laAveaGa 218 (582)
T TIGR01108 146 -------HTLETYLDLAEELLEMGVDSICIKDMAGILTPKAAYELVSALKKRFGLPVHLHSHATTGMAEMALLKAIEAGA 218 (582)
T ss_pred -------CCHHHHHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHHhCCCceEEEecCCCCcHHHHHHHHHHhCC
Confidence 16667777777778899999999999753 46677766531 122 4555565555455544452
Q ss_pred chhhhcCCCC-CCCccccCCCCCCHHHHHHHHHh--cccccccEEecccCCCcccCCCchHHHHHHHHhhC---------
Q 013861 305 FREALDSNPR-FGDKKTYQMNPANYREALVEAQA--DESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKY--------- 372 (435)
Q Consensus 305 FRdA~~Sap~-fgDRktYQmdp~N~~EAlre~~~--D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~--------- 372 (435)
+.++++-. +|-+. =|. +. |.+..+.. ..+-|-|+=- +... -+.++++++.+
T Consensus 219 --~~vd~ai~GlG~~t-Gn~---~l-e~vv~~L~~~g~~tgid~~~-------L~~l---~~~~~~v~~~Y~~~~~~~~~ 281 (582)
T TIGR01108 219 --DGIDTAISSMSGGT-SHP---PT-ETMVAALRGTGYDTGLDIEL-------LLEI---AAYFREVRKKYSQFEGQLKG 281 (582)
T ss_pred --CEEEeccccccccc-cCh---hH-HHHHHHHHhcCCCcccCHHH-------HHHH---HHHHHHHHHHhhcCCCcccC
Confidence 22333332 44431 111 11 22222222 2222333222 2222 23333444333
Q ss_pred -CCCeEEEEechH--HHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEe-ehhc
Q 013861 373 -PLPIAAYQVSGE--YSMIKAGGALKMIDEQRVMMESLMCLRRAGADII-LTYF 422 (435)
Q Consensus 373 -~lPvaaYqVSGE--YaMikaAa~~G~ide~~~v~Esl~~ikRAGAd~I-iTYf 422 (435)
+.=|--||++|= =.+...+-+.|..|.=.-++|-+.-.++..-+.+ +|=+
T Consensus 282 ~~~~v~~~e~pGG~~snl~~ql~~~g~~~~~~~vl~e~~~v~~~lG~~~~VTP~ 335 (582)
T TIGR01108 282 PDSRILVAQVPGGMLSNLESQLKEQNALDKLDEVLEEIPRVREDLGYPPLVTPT 335 (582)
T ss_pred CCccEEEEcCCCchHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCCCeECCc
Confidence 233667999988 4455557888988766666777777777766766 5543
No 102
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=78.74 E-value=25 Score=38.86 Aligned_cols=219 Identities=18% Similarity=0.183 Sum_probs=127.8
Q ss_pred hhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCC
Q 013861 157 HGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVRED 236 (435)
Q Consensus 157 ~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTshGHcGIv~e~ 236 (435)
+-+.+.++.+.+.|+..|-+|--+.+. --+.++|+..|+.-- .+- +|+ .||..-
T Consensus 96 ~vv~~~v~~A~~~Gvd~irif~~lnd~-------------~n~~~~i~~ak~~G~--~v~--~~i-~~t~~p-------- 149 (592)
T PRK09282 96 DVVEKFVEKAAENGIDIFRIFDALNDV-------------RNMEVAIKAAKKAGA--HVQ--GTI-SYTTSP-------- 149 (592)
T ss_pred hhhHHHHHHHHHCCCCEEEEEEecChH-------------HHHHHHHHHHHHcCC--EEE--EEE-EeccCC--------
Confidence 346788999999999999998654331 135678888887743 222 334 233210
Q ss_pred CccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCc--------hHHHHHHHHHH-CCC--CCceeechhhhhcccccccc
Q 013861 237 GVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDG--------RVGAIRAALDA-EGF--QHVSIMSYTAKYASSFYGPF 305 (435)
Q Consensus 237 g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMMDG--------rVgAIR~aLD~-~Gf--~~v~IMSYSaKyASafYGPF 305 (435)
. -|++.+.+.|-...++|||+|+-.||.=+ .|.++|+.++- -|+ +|+.=|+-+.-.+..-.|-
T Consensus 150 --~---~t~~~~~~~a~~l~~~Gad~I~i~Dt~G~~~P~~~~~lv~~lk~~~~~pi~~H~Hnt~Gla~An~laAv~aGa- 223 (592)
T PRK09282 150 --V---HTIEKYVELAKELEEMGCDSICIKDMAGLLTPYAAYELVKALKEEVDLPVQLHSHCTSGLAPMTYLKAVEAGV- 223 (592)
T ss_pred --C---CCHHHHHHHHHHHHHcCCCEEEECCcCCCcCHHHHHHHHHHHHHhCCCeEEEEEcCCCCcHHHHHHHHHHhCC-
Confidence 1 15777888888888999999999999763 46677766531 122 3444466655555555552
Q ss_pred hhhhcCCC-CCCCccccCCCCCCHHHHHHHHHh--cccccccEEecccCCCcccCCCchHHHHHHHHhhC----------
Q 013861 306 REALDSNP-RFGDKKTYQMNPANYREALVEAQA--DESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKY---------- 372 (435)
Q Consensus 306 RdA~~Sap-~fgDRktYQmdp~N~~EAlre~~~--D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~---------- 372 (435)
|.++.+- .||.+.+ |.+ . |.+..+.. ..+.|-|+=. +...--| ++++++.+
T Consensus 224 -d~vD~ai~g~g~~ag-n~~---~-e~vv~~L~~~g~~~~idl~~-------l~~~s~~---~~~~~~~y~~~~~~~~~~ 287 (592)
T PRK09282 224 -DIIDTAISPLAFGTS-QPP---T-ESMVAALKGTPYDTGLDLEL-------LFEIAEY---FREVRKKYKQFESEFTIV 287 (592)
T ss_pred -CEEEeeccccCCCcC-CHh---H-HHHHHHHHhCCCCCccCHHH-------HHHHHHH---HHHHHHHhhcCCCccccC
Confidence 2233333 3565554 222 2 33333322 2233444433 4433334 44444333
Q ss_pred CCCeEEEEechH--HHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEe-ehhcH
Q 013861 373 PLPIAAYQVSGE--YSMIKAGGALKMIDEQRVMMESLMCLRRAGADII-LTYFA 423 (435)
Q Consensus 373 ~lPvaaYqVSGE--YaMikaAa~~G~ide~~~v~Esl~~ikRAGAd~I-iTYfA 423 (435)
+.=|..+|++|- =.+...+.+.|.+|.=.-++|-+...++..-+.| +|=+.
T Consensus 288 ~~~v~~~~~pGg~~snl~~q~~~~g~~d~~~~vl~e~~~v~~~lG~~~~VTP~S 341 (592)
T PRK09282 288 DTRVLIHQVPGGMISNLVSQLKEQNALDKLDEVLEEIPRVREDLGYPPLVTPTS 341 (592)
T ss_pred CccEEEEcCCCcHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHcCCCCeECChh
Confidence 233678999998 4455568889998755556666666666666666 55444
No 103
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=78.38 E-value=1.2e+02 Score=33.81 Aligned_cols=198 Identities=20% Similarity=0.237 Sum_probs=107.3
Q ss_pred CCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCC
Q 013861 147 MPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSS 226 (435)
Q Consensus 147 MPGv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTs 226 (435)
.++..|++.+ +.+..++.+.+.|+.++=..|- +.-|..-+ -.+++ --+.++.|++..|+.-+.+ ||-
T Consensus 12 s~~~~~~~t~-dkl~ia~~L~~~Gv~~IE~~GG---atfd~~~~-f~~e~--~~e~l~~l~~~~~~~~l~~---L~R--- 78 (582)
T TIGR01108 12 SLFATRMRTE-DMLPIAEKLDDVGYWSLEVWGG---ATFDACIR-FLNED--PWERLRELKKALPNTPLQM---LLR--- 78 (582)
T ss_pred ccCCccCCHH-HHHHHHHHHHHcCCCEEEecCC---cccccccc-cCCCC--HHHHHHHHHHhCCCCEEEE---EEc---
Confidence 4555688876 5899999999999999988531 11111000 01122 2468899999889855542 210
Q ss_pred CCcceeecCCCcc-ccHHHHHHHHHHHHHHHHcCCCeecCCCCC---CchHHHHHHHHHHCCCCCceeechhhhhccccc
Q 013861 227 DGHDGIVREDGVI-MNDETVHQLCKQAVSQARAGADVVSPSDMM---DGRVGAIRAALDAEGFQHVSIMSYTAKYASSFY 302 (435)
Q Consensus 227 hGHcGIv~e~g~I-dND~Tv~~Lak~Avs~A~AGADiVAPSDMM---DGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafY 302 (435)
|.. --|+. --|.-++...+.|+ ++|.|+|--.|-+ +.-..+|+.+ .++|+.-..-++|+.
T Consensus 79 -g~N----~~G~~~ypddvv~~~v~~a~---~~Gvd~irif~~lnd~~n~~~~i~~a-k~~G~~v~~~i~~t~------- 142 (582)
T TIGR01108 79 -GQN----LLGYRHYADDVVERFVKKAV---ENGMDVFRIFDALNDPRNLQAAIQAA-KKHGAHAQGTISYTT------- 142 (582)
T ss_pred -ccc----ccccccCchhhHHHHHHHHH---HCCCCEEEEEEecCcHHHHHHHHHHH-HHcCCEEEEEEEecc-------
Confidence 100 00111 12334444555554 6699986443332 3333344333 356763333356643
Q ss_pred ccchhhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhCCCCeEEEEec
Q 013861 303 GPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAAYQVS 382 (435)
Q Consensus 303 GPFRdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~~lPvaaYqVS 382 (435)
.|+ .++.-..+..+++. +-|||.|-+.--....+|.- --++++.+|+.+++|+. +|--
T Consensus 143 ~p~-----------------~~~~~~~~~~~~~~---~~Gad~I~i~Dt~G~~~P~~-v~~lv~~lk~~~~~pi~-~H~H 200 (582)
T TIGR01108 143 SPV-----------------HTLETYLDLAEELL---EMGVDSICIKDMAGILTPKA-AYELVSALKKRFGLPVH-LHSH 200 (582)
T ss_pred CCC-----------------CCHHHHHHHHHHHH---HcCCCEEEECCCCCCcCHHH-HHHHHHHHHHhCCCceE-EEec
Confidence 121 23333444444332 35999998544444456664 35899999999999985 6653
Q ss_pred hHH----HHHHHHHHCC
Q 013861 383 GEY----SMIKAGGALK 395 (435)
Q Consensus 383 GEY----aMikaAa~~G 395 (435)
=.+ +-..+|.++|
T Consensus 201 nt~Gla~An~laAveaG 217 (582)
T TIGR01108 201 ATTGMAEMALLKAIEAG 217 (582)
T ss_pred CCCCcHHHHHHHHHHhC
Confidence 222 2233456666
No 104
>cd08207 RLP_NonPhot Ribulose bisphosphate carboxylase like proteins from nonphototrophic bacteria. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.
Probab=78.19 E-value=7.4 Score=41.28 Aligned_cols=135 Identities=22% Similarity=0.219 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHHHHcCCCeecC--------CCCCCchHHHHHHHHHHCCCCCceeechhhhhcccccccchhhhcCCCC
Q 013861 243 ETVHQLCKQAVSQARAGADVVSP--------SDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPR 314 (435)
Q Consensus 243 ~Tv~~Lak~Avs~A~AGADiVAP--------SDMMDGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRdA~~Sap~ 314 (435)
-|-+.+++++..++..|.|+|== -.=++-||.++.++++++. + .
T Consensus 156 lsp~~~a~~~y~~~~GGvD~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a~-------------------------~---e 207 (406)
T cd08207 156 LTPEETAALVRQLAAAGIDFIKDDELLANPPYSPLDERVRAVMRVINDHA-------------------------Q---R 207 (406)
T ss_pred CCHHHHHHHHHHHHhCCCCcccccccCCCCCCCcHHHHHHHHHHHHHHHH-------------------------H---h
Confidence 46788999999999999999731 1123345555554444331 1 1
Q ss_pred CCCccccCCCCC-CHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhCCCCeEEEE-echHHHHHHHHH
Q 013861 315 FGDKKTYQMNPA-NYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAAYQ-VSGEYSMIKAGG 392 (435)
Q Consensus 315 fgDRktYQmdp~-N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~~lPvaaYq-VSGEYaMikaAa 392 (435)
-|.++-|-.|-. ..+|.++.++.=++.|++++| |-|...=++.++.+++..++||-+-- -+|-|. ..-
T Consensus 208 TG~~~~y~~NiT~~~~em~~ra~~~~~~G~~~~m-------v~~~~~G~~~l~~l~~~~~l~IhaHra~~ga~~---r~p 277 (406)
T cd08207 208 TGRKVMYAFNITDDIDEMRRNHDLVVEAGGTCVM-------VSLNSVGLSGLAALRRHSQLPIHGHRNGWGMLT---RSP 277 (406)
T ss_pred hCCcceEEEecCCCHHHHHHHHHHHHHhCCCeEE-------EeccccchHHHHHHHhcCCceEEECCCcceecc---cCC
Confidence 256666766653 356777777777889999999 98887669999999998899997421 111111 001
Q ss_pred HCCCCchhhHHHHHHHHHHHhcccEeeh
Q 013861 393 ALKMIDEQRVMMESLMCLRRAGADIILT 420 (435)
Q Consensus 393 ~~G~ide~~~v~Esl~~ikRAGAd~IiT 420 (435)
+.|+ +. .+ + -+-+|-||||.+++
T Consensus 278 ~~Gi-s~-~v-l--~kl~RLaGaD~~~~ 300 (406)
T cd08207 278 ALGI-SF-QA-Y--QKLWRLAGVDHLHV 300 (406)
T ss_pred CCCC-cH-HH-H--HHHHHHcCCCcccc
Confidence 2233 22 22 2 34566799999987
No 105
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=77.91 E-value=19 Score=38.09 Aligned_cols=48 Identities=25% Similarity=0.253 Sum_probs=35.3
Q ss_pred hhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEe
Q 013861 157 HGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYT 217 (435)
Q Consensus 157 ~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~Iit 217 (435)
....++++.+++.|+.-+.+=- .+ | .+ --+...|+.||+.||++.||+
T Consensus 223 ~~~~~r~~~L~~aG~d~I~vd~----a~----g---~~--~~~~~~i~~i~~~~~~~~vi~ 270 (450)
T TIGR01302 223 EFDKERAEALVKAGVDVIVIDS----SH----G---HS--IYVIDSIKEIKKTYPDLDIIA 270 (450)
T ss_pred hhHHHHHHHHHHhCCCEEEEEC----CC----C---cH--hHHHHHHHHHHHhCCCCCEEE
Confidence 3468899999999999877621 11 2 11 136689999999999988877
No 106
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=77.91 E-value=23 Score=37.73 Aligned_cols=50 Identities=16% Similarity=0.294 Sum_probs=35.9
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEe-eec
Q 013861 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYT-DVA 220 (435)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~Iit-DVc 220 (435)
...++++.+++.|+.-|.+= -.. ...--+...|+.||++||++.||+ ||+
T Consensus 153 ~~~~~v~~lv~aGvDvI~iD----~a~---------g~~~~~~~~v~~ik~~~p~~~vi~g~V~ 203 (404)
T PRK06843 153 DTIERVEELVKAHVDILVID----SAH---------GHSTRIIELVKKIKTKYPNLDLIAGNIV 203 (404)
T ss_pred HHHHHHHHHHhcCCCEEEEE----CCC---------CCChhHHHHHHHHHhhCCCCcEEEEecC
Confidence 46799999999999987771 111 112346678999999999986644 664
No 107
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=77.68 E-value=5.9 Score=39.61 Aligned_cols=88 Identities=23% Similarity=0.276 Sum_probs=55.2
Q ss_pred ccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCC---CchHHHHHHHHhhC-CCCeEEEEechHHHHHHHHHH
Q 013861 318 KKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPG---LPYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGA 393 (435)
Q Consensus 318 RktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPa---l~YLDIIr~vk~~~-~lPvaaYqVSGEYaMikaAa~ 393 (435)
...|-+++....+.++++ .+.|++-+-++ -| .-|. -.|.++++.+|+++ .+.+-+ ...+|-..+. ..
T Consensus 67 ~~~~~ls~eei~~~~~~~---~~~G~~~i~l~-gG--~~p~~~~~~~~~li~~Ik~~~~~i~~~~-~s~~ei~~~~--~~ 137 (340)
T TIGR03699 67 PEGYVLSVEEILQKIEEL---VAYGGTQILLQ-GG--VNPDLGLDYYEDLFRAIKARFPHIHIHS-FSPVEIVYIA--KK 137 (340)
T ss_pred ccccCCCHHHHHHHHHHH---HHcCCcEEEEe-cC--CCCCCCHHHHHHHHHHHHHHCCCcCCCC-CCHHHHHHHh--cc
Confidence 345667664444444443 45688777643 22 2332 24678999999987 577766 3456644333 35
Q ss_pred CCCCchhhHHHHHHHHHHHhcccEee
Q 013861 394 LKMIDEQRVMMESLMCLRRAGADIIL 419 (435)
Q Consensus 394 ~G~ide~~~v~Esl~~ikRAGAd~Ii 419 (435)
+|+.+ -|.+..+|+||.|.+-
T Consensus 138 ~g~~~-----~e~l~~Lk~aG~~~~~ 158 (340)
T TIGR03699 138 EGLSL-----REVLERLKEAGLDSIP 158 (340)
T ss_pred CCCCH-----HHHHHHHHHcCCCcCC
Confidence 67763 4788899999999765
No 108
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=77.42 E-value=9.7 Score=41.44 Aligned_cols=260 Identities=17% Similarity=0.128 Sum_probs=139.4
Q ss_pred CCCCCCChHHHh-hhhcCCCCCCCceeeEEEeeCCCCcccCCCCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCC
Q 013861 106 PRRNRKSPAMRA-SFQETNLSPANFVYPLFIHEGEEDTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDAL 184 (435)
Q Consensus 106 ~RRlR~~~~~R~-l~~Et~L~~~~LI~PlFV~eg~~~~~I~sMPGv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~ 184 (435)
.|-++-+||-|= .+++.. ++-.++ ....|.+ ++|...|. |+-+.++++.+.+.|+..|-+|--+.+
T Consensus 56 ~rfl~Edpwerlr~lr~~~--~nt~lq--mL~Rg~N------~vGy~~y~-ddvv~~fv~~a~~~Gidi~RIfd~lnd-- 122 (499)
T PRK12330 56 IRFLNEDPWERLRTFRKLM--PNSRLQ--MLLRGQN------LLGYRHYE-DEVVDRFVEKSAENGMDVFRVFDALND-- 122 (499)
T ss_pred hcccCCCHHHHHHHHHHhC--CCCeEE--EEEcccc------cCCccCcc-hhHHHHHHHHHHHcCCCEEEEEecCCh--
Confidence 355666666441 133322 222222 3345666 88977777 445778899999999999999864332
Q ss_pred CCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeec
Q 013861 185 KSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVS 264 (435)
Q Consensus 185 Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTshGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVA 264 (435)
---+..+|+.+|+.-- .+..-+|. |.. .+. |++.+.+.|-...++|||.|+
T Consensus 123 -----------v~nl~~ai~~vk~ag~--~~~~~i~y---t~s----------p~~---t~e~~~~~a~~l~~~Gad~I~ 173 (499)
T PRK12330 123 -----------PRNLEHAMKAVKKVGK--HAQGTICY---TVS----------PIH---TVEGFVEQAKRLLDMGADSIC 173 (499)
T ss_pred -----------HHHHHHHHHHHHHhCC--eEEEEEEE---ecC----------CCC---CHHHHHHHHHHHHHcCCCEEE
Confidence 1456778999988743 23233333 221 112 777777778788899999999
Q ss_pred CCCCCC--------chHHHHHHHHH-H--CC--CCCceeechhhhhcccccccchhhhcCCCC-CCCccccCCCCCCHHH
Q 013861 265 PSDMMD--------GRVGAIRAALD-A--EG--FQHVSIMSYTAKYASSFYGPFREALDSNPR-FGDKKTYQMNPANYRE 330 (435)
Q Consensus 265 PSDMMD--------GrVgAIR~aLD-~--~G--f~~v~IMSYSaKyASafYGPFRdA~~Sap~-fgDRktYQmdp~N~~E 330 (435)
-.||.= =.|.+||+.+. . -+ ++|+.=|+.+.-.+..=-|- |.++++-. +|-+.+ | -.-|
T Consensus 174 IkDtaGll~P~~~~~LV~~Lk~~~~~~ipI~~H~Hnt~GlA~An~laAieAGa--d~vDtai~Glg~~aG-n----~atE 246 (499)
T PRK12330 174 IKDMAALLKPQPAYDIVKGIKEACGEDTRINLHCHSTTGVTLVSLMKAIEAGV--DVVDTAISSMSLGPG-H----NPTE 246 (499)
T ss_pred eCCCccCCCHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCcHHHHHHHHHHcCC--CEEEeeccccccccc-c----hhHH
Confidence 999974 34677777662 1 11 24554455544444333332 22333322 232321 1 1223
Q ss_pred HHHHHHh--cccccccEEecccCCCcccCCCchHHHHHHHHhh-------CCCCeEEEEech-HHHHHHH-HHHCCCCch
Q 013861 331 ALVEAQA--DESEGADILLFSVLGSQVKPGLPYLDVIRLLRDK-------YPLPIAAYQVSG-EYSMIKA-GGALKMIDE 399 (435)
Q Consensus 331 Alre~~~--D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~-------~~lPvaaYqVSG-EYaMika-Aa~~G~ide 399 (435)
.+..+.. ..+-|-|+-. +....-|+-=||..-.. .+.++--|||=| -|+-+.. +-+.|..|.
T Consensus 247 ~vv~~L~~~g~~tgiDl~~-------L~~i~~~~~~vr~~y~~~~~~~~~~d~~v~~~qiPGGm~snl~~Ql~~~g~~d~ 319 (499)
T PRK12330 247 SLVEMLEGTGYTTKLDMDR-------LLKIRDHFKKVRPKYKEFESKTTGVETEIFKSQIPGGMLSNMESQLKQQGAGDR 319 (499)
T ss_pred HHHHHHHhcCCCCCCCHHH-------HHHHHHHHHHHHHHHhcccccccCCCCccccCCCCCCchhhHHHHHHHcChhhH
Confidence 3333332 2334555555 44444444444332211 235566666644 3444333 556777775
Q ss_pred hhHHHHHHHHHHHhcccEe-ehh
Q 013861 400 QRVMMESLMCLRRAGADII-LTY 421 (435)
Q Consensus 400 ~~~v~Esl~~ikRAGAd~I-iTY 421 (435)
=.-|+|-.-..++..-+.+ +|=
T Consensus 320 ~~ev~~e~~~Vr~~lG~~~~VTP 342 (499)
T PRK12330 320 MDEVLEEVPRVRKDAGYPPLVTP 342 (499)
T ss_pred HHHHHHHHHHHHHHcCCCCeeCC
Confidence 4444555544444444444 443
No 109
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=77.42 E-value=12 Score=40.33 Aligned_cols=205 Identities=22% Similarity=0.218 Sum_probs=126.8
Q ss_pred eeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcc
Q 013861 151 YRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHD 230 (435)
Q Consensus 151 ~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTshGHc 230 (435)
||+--|+-+.++|+++.+.||.-|-+|-- .|+..=++.||+.+|+.--.... ++ .||..=
T Consensus 92 YrhyaDDvVe~Fv~ka~~nGidvfRiFDA-------------lND~RNl~~ai~a~kk~G~h~q~----~i-~YT~sP-- 151 (472)
T COG5016 92 YRHYADDVVEKFVEKAAENGIDVFRIFDA-------------LNDVRNLKTAIKAAKKHGAHVQG----TI-SYTTSP-- 151 (472)
T ss_pred ccCCchHHHHHHHHHHHhcCCcEEEechh-------------ccchhHHHHHHHHHHhcCceeEE----EE-EeccCC--
Confidence 45555655677899999999998888842 55556688999999987543222 22 243321
Q ss_pred eeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC--------chHHHHHHHHHHC------CCCCceeechhhh
Q 013861 231 GIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMD--------GRVGAIRAALDAE------GFQHVSIMSYTAK 296 (435)
Q Consensus 231 GIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMMD--------GrVgAIR~aLD~~------Gf~~v~IMSYSaK 296 (435)
=-|++...+.|-.+++.|+|-|+--||-- --|.+||+.++-. --+.++.|+|-+-
T Consensus 152 -----------vHt~e~yv~~akel~~~g~DSIciKDmaGlltP~~ayelVk~iK~~~~~pv~lHtH~TsG~a~m~ylkA 220 (472)
T COG5016 152 -----------VHTLEYYVELAKELLEMGVDSICIKDMAGLLTPYEAYELVKAIKKELPVPVELHTHATSGMAEMTYLKA 220 (472)
T ss_pred -----------cccHHHHHHHHHHHHHcCCCEEEeecccccCChHHHHHHHHHHHHhcCCeeEEecccccchHHHHHHHH
Confidence 12788889999999999999999999853 2578888877521 1133566666332
Q ss_pred hcccccccc-hhhhcCCCCCCCccccCCCCCCHHHHHHHHHhc--ccccccEEecccCCCcccCCCchHHHHHHHHhhC-
Q 013861 297 YASSFYGPF-REALDSNPRFGDKKTYQMNPANYREALVEAQAD--ESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKY- 372 (435)
Q Consensus 297 yASafYGPF-RdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D--~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~- 372 (435)
. ==|-= =|.+-|..+.| |-.+| -|.|..+.++ -+.|-|+-. ++..-.|+ +++|+++
T Consensus 221 v---EAGvD~iDTAisp~S~g----tsqP~---tEtmv~aL~gt~yDtgld~~~-------l~~~~~yf---~~vrkkY~ 280 (472)
T COG5016 221 V---EAGVDGIDTAISPLSGG----TSQPA---TETMVAALRGTGYDTGLDLEL-------LEEIAEYF---REVRKKYK 280 (472)
T ss_pred H---HhCcchhhhhhccccCC----CCCCc---HHHHHHHhcCCCCCccccHHH-------HHHHHHHH---HHHHHHHh
Confidence 1 11211 13333433433 33333 4667777665 346777776 66655443 4555555
Q ss_pred ----------CCCeEEEEechH-H-HHHHHHHHCCCCchhhHHHHH
Q 013861 373 ----------PLPIAAYQVSGE-Y-SMIKAGGALKMIDEQRVMMES 406 (435)
Q Consensus 373 ----------~lPvaaYqVSGE-Y-aMikaAa~~G~ide~~~v~Es 406 (435)
+--|-.|||=|- + .|+..--++|.+|.=.-|+|-
T Consensus 281 ~~~~~~~~~~d~~ili~qvPGGMlSNl~sQLkeqnaldK~~eVLeE 326 (472)
T COG5016 281 GLLEPQAKGVDPRILIYQVPGGMLSNLESQLKEQNALDKLEEVLEE 326 (472)
T ss_pred hccCccccCCCCcceEeeCChHHHHHHHHHHHHcchhhHHHHHHHH
Confidence 345678999764 2 244445578888764444443
No 110
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=77.39 E-value=5.1 Score=35.28 Aligned_cols=112 Identities=18% Similarity=0.202 Sum_probs=67.0
Q ss_pred chHHHHHHHHHHCCC-CCceeechhhhhcccccccchhhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEecc
Q 013861 271 GRVGAIRAALDAEGF-QHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFS 349 (435)
Q Consensus 271 GrVgAIR~aLD~~Gf-~~v~IMSYSaKyASafYGPFRdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~ 349 (435)
+-+..+-+.+.+.|. .+|.|.||.-..... .....|.+ +..|-.+..+..+ .........|+|.+.
T Consensus 76 ~~~~~l~~~i~~~~~~~~v~i~s~~~~~l~~-------~~~~~p~~--~~~~~~~~~~~~~--~~~~~~~~~~~~~v~-- 142 (189)
T cd08556 76 GLEAKVAELLREYGLEERVVVSSFDHEALRA-------LKELDPEV--PTGLLVDKPPLDP--LLAELARALGADAVN-- 142 (189)
T ss_pred hHHHHHHHHHHHcCCcCCEEEEeCCHHHHHH-------HHHhCCCC--cEEEEeecCcccc--hhhhHHHhcCCeEEc--
Confidence 346667777777774 778888876432221 12222332 1122222111111 111234567899888
Q ss_pred cCCCcccCCCchHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEeehh
Q 013861 350 VLGSQVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTY 421 (435)
Q Consensus 350 ~~~~~VKPal~YLDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G~ide~~~v~Esl~~ikRAGAd~IiTY 421 (435)
+.=....-.+++.+++ .++++.+|-|- . .|.+..+.+.|+|.|+|=
T Consensus 143 -----~~~~~~~~~~i~~~~~-~g~~v~~wtvn----------------~----~~~~~~~~~~GVdgI~TD 188 (189)
T cd08556 143 -----PHYKLLTPELVRAAHA-AGLKVYVWTVN----------------D----PEDARRLLALGVDGIITD 188 (189)
T ss_pred -----cChhhCCHHHHHHHHH-cCCEEEEEcCC----------------C----HHHHHHHHHCCCCEEecC
Confidence 5545567889999988 59999999873 2 445566678899999984
No 111
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=77.28 E-value=60 Score=29.91 Aligned_cols=53 Identities=15% Similarity=0.268 Sum_probs=35.8
Q ss_pred CCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCC-CCHHHHHHHHHHHCC
Q 013861 148 PGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDN-GLVPRTIWLLKDRYP 211 (435)
Q Consensus 148 PGv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~-g~v~raIr~iK~~~P 211 (435)
|+++...+. .+.+.++.+.+.|++.|=| + .+| |. +.++ .+..+.++.||+.+|
T Consensus 8 ~s~~~~~~~-~~~~~~~~~~~~G~~~i~l-~-----~~d--~~--~~~~~~~~~~~~~~i~~~~~ 61 (220)
T PRK05581 8 PSILSADFA-RLGEEVKAVEAAGADWIHV-D-----VMD--GH--FVPNLTIGPPVVEAIRKVTK 61 (220)
T ss_pred cchhcCCHH-HHHHHHHHHHHcCCCEEEE-e-----Ccc--CC--cCCCcCcCHHHHHHHHhcCC
Confidence 566666664 4889999999999998877 3 233 11 2222 134678899987765
No 112
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=77.25 E-value=5.8 Score=40.28 Aligned_cols=59 Identities=27% Similarity=0.398 Sum_probs=44.1
Q ss_pred CCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEe
Q 013861 148 PGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYT 217 (435)
Q Consensus 148 PGv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~Iit 217 (435)
++-|+++.+ .++++++++.+.|++.|.|-+-..+.. +-.-+.+.++.||+.+|++-+.+
T Consensus 74 ~~~y~l~~e-eI~~~a~~~~~~G~~~v~l~~G~~p~~----------~~~~~~e~i~~Ik~~~p~i~i~~ 132 (351)
T TIGR03700 74 PGAYAMSLE-EIVARVKEAYAPGATEVHIVGGLHPNL----------PFEWYLDMIRTLKEAYPDLHVKA 132 (351)
T ss_pred cccCCCCHH-HHHHHHHHHHHCCCcEEEEecCCCCCC----------CHHHHHHHHHHHHHHCCCceEEe
Confidence 457788986 699999999999999998855322111 11247899999999999877643
No 113
>cd08148 RuBisCO_large Ribulose bisphosphate carboxylase large chain. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions.
Probab=77.23 E-value=6.9 Score=40.95 Aligned_cols=135 Identities=24% Similarity=0.305 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHHHHcCCCeecCC--------CCCCchHHHHHHHHHHCCCCCceeechhhhhcccccccchhhhcCCCC
Q 013861 243 ETVHQLCKQAVSQARAGADVVSPS--------DMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPR 314 (435)
Q Consensus 243 ~Tv~~Lak~Avs~A~AGADiVAPS--------DMMDGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRdA~~Sap~ 314 (435)
-|-+.+++++..++..|.|+|==- .=++-||.+..++++++. +.
T Consensus 140 lsp~~~a~~~y~~~~GG~D~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a~-------------------------~e--- 191 (366)
T cd08148 140 LNPKYTAEAAYAAALGGLDLIKDDETLTDQPFCPLRDRITEVAAALDRVQ-------------------------EE--- 191 (366)
T ss_pred CCHHHHHHHHHHHHhCCCCccccccccCCCCCCcHHHHHHHHHHHHHHHH-------------------------Hh---
Confidence 466789999999999999987321 112344444444444321 11
Q ss_pred CCCccccCCCCCCH-HHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhh--CCCCeEEE-EechHHHHHHH
Q 013861 315 FGDKKTYQMNPANY-REALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDK--YPLPIAAY-QVSGEYSMIKA 390 (435)
Q Consensus 315 fgDRktYQmdp~N~-~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~--~~lPvaaY-qVSGEYaMika 390 (435)
-|.++-|-.|.... .|.++.++.=+++|++++| |-|...=++.++.+++. +++||-+- ..+|-|. .
T Consensus 192 TG~~~~y~~NiT~~~~em~~ra~~~~~~G~~~~m-------v~~~~~G~~~l~~l~~~~~~~l~IhaHrA~~ga~~---~ 261 (366)
T cd08148 192 TGEKKLYAVNVTAGTFEIIERAERALELGANMLM-------VDVLTAGFSALQALAEDFEIDLPIHVHRAMHGAVT---R 261 (366)
T ss_pred hCCcceEEEEccCCHHHHHHHHHHHHHhCCCEEE-------EeccccchHHHHHHHHhCcCCcEEEeccccccccc---c
Confidence 26778888877654 7778888888899999999 99887779999999984 47888652 2223221 1
Q ss_pred HHHCCCCchhhHHHHHHHHHHHhcccEeeh
Q 013861 391 GGALKMIDEQRVMMESLMCLRRAGADIILT 420 (435)
Q Consensus 391 Aa~~G~ide~~~v~Esl~~ikRAGAd~IiT 420 (435)
.-..| ++. .++=. -+|-||||.+++
T Consensus 262 ~~~~G-~~~--~~l~k--l~RLaGaD~~~~ 286 (366)
T cd08148 262 SKFHG-ISM--LVLAK--LLRMAGGDFIHT 286 (366)
T ss_pred CCCCC-cCH--HHHHH--HHHHcCCCcccc
Confidence 12334 333 33333 356689999985
No 114
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=77.23 E-value=3 Score=41.82 Aligned_cols=156 Identities=21% Similarity=0.300 Sum_probs=90.0
Q ss_pred hHHHHHHHHHH-cCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCC
Q 013861 158 GLVQEVAKARD-VGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVRED 236 (435)
Q Consensus 158 ~l~~~v~~~~~-~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTshGHcGIv~e~ 236 (435)
..++.+.++++ .|..+|-|=| | .-+...|+.+.+.- +-|+.=+-|-|=+.+=--|....
T Consensus 93 ~a~~na~rl~~eaGa~aVkiEg----------g-------~~~~~~i~~l~~~g--IpV~gHiGltPq~a~~~ggy~~q- 152 (263)
T TIGR00222 93 QALKNAARVMQETGANAVKLEG----------G-------EWLVETVQMLTERG--VPVVGHLGLTPQSVNILGGYKVQ- 152 (263)
T ss_pred HHHHHHHHHHHHhCCeEEEEcC----------c-------HhHHHHHHHHHHCC--CCEEEecCCCceeEeecCCeeec-
Confidence 46677777666 7787776622 1 11233445554432 33443333333322211112211
Q ss_pred CccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCCCceeech-hhhhcccccccchhhhcC----
Q 013861 237 GVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSY-TAKYASSFYGPFREALDS---- 311 (435)
Q Consensus 237 g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMMDGrVgAIR~aLD~~Gf~~v~IMSY-SaKyASafYGPFRdA~~S---- 311 (435)
| .+++..+.+.+.|..+.+|||+.|-...+=.--...|.+.| ++++... |.++++.=.=-+-|.++-
T Consensus 153 g--rt~~~a~~~i~~A~a~e~AGA~~ivlE~vp~~~a~~It~~l------~iP~iGIGaG~~~dGQvlV~~D~lG~~~~~ 224 (263)
T TIGR00222 153 G--KDEEAAKKLLEDALALEEAGAQLLVLECVPVELAAKITEAL------AIPVIGIGAGNVCDGQILVMHDALGITVGH 224 (263)
T ss_pred C--CCHHHHHHHHHHHHHHHHcCCCEEEEcCCcHHHHHHHHHhC------CCCEEeeccCCCCCceeeeHHhhcCCCCCC
Confidence 2 24667889999999999999999988777644444555554 3677766 345666655556666655
Q ss_pred CCCCCCccccCCCCCCHHHHHHHHHhcccccc
Q 013861 312 NPRFGDKKTYQMNPANYREALVEAQADESEGA 343 (435)
Q Consensus 312 ap~fgDRktYQmdp~N~~EAlre~~~D~~EGA 343 (435)
.|+| -|.|----....+|+.+-..|+++|.
T Consensus 225 ~pkf--~k~y~~~~~~~~~a~~~y~~~V~~g~ 254 (263)
T TIGR00222 225 IPKF--AKNYLAETETIRAAVRQYMAEVRSGV 254 (263)
T ss_pred CCCc--hHHHhhHHHHHHHHHHHHHHHHhCCC
Confidence 3555 34454333445667777777777663
No 115
>PRK12653 fructose-6-phosphate aldolase; Reviewed
Probab=76.79 E-value=14 Score=35.95 Aligned_cols=76 Identities=24% Similarity=0.301 Sum_probs=51.4
Q ss_pred HHHHHHHHHHcCCCeecCC-CCC-----Cc--hHHHHHHHHHHCCCCCceeechhhhhcccccccchhhhcCCCCCCCcc
Q 013861 248 LCKQAVSQARAGADVVSPS-DMM-----DG--RVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKK 319 (435)
Q Consensus 248 Lak~Avs~A~AGADiVAPS-DMM-----DG--rVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRdA~~Sap~fgDRk 319 (435)
-..||+.-|+|||+.|||= +-| || .|..|++.++..|+ ++-||+=|.|
T Consensus 113 s~~Qa~~Aa~aGa~yIspyvgR~~~~g~dg~~~i~~i~~~~~~~~~-~tkILaAS~r----------------------- 168 (220)
T PRK12653 113 GAAQGLLSALAGAEYVAPYVNRIDAQGGSGIQTVTDLQQLLKMHAP-QAKVLAASFK----------------------- 168 (220)
T ss_pred CHHHHHHHHhcCCcEEEeecChHhhcCCChHHHHHHHHHHHHhcCC-CcEEEEEecC-----------------------
Confidence 3578888899999999994 111 21 35667777766665 6667654443
Q ss_pred ccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHh
Q 013861 320 TYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRD 370 (435)
Q Consensus 320 tYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~ 370 (435)
|.++.+..+. -|+|++- + =.||+.++.+
T Consensus 169 -------~~~~v~~~~~----~G~d~vT-------i-----p~~vl~~l~~ 196 (220)
T PRK12653 169 -------TPRQALDCLL----AGCESIT-------L-----PLDVAQQMIS 196 (220)
T ss_pred -------CHHHHHHHHH----cCCCEEE-------C-----CHHHHHHHHc
Confidence 7778776554 6999998 4 3577777643
No 116
>PRK08508 biotin synthase; Provisional
Probab=76.57 E-value=27 Score=34.45 Aligned_cols=59 Identities=20% Similarity=0.216 Sum_probs=40.3
Q ss_pred Ccee-echhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEE
Q 013861 149 GCYR-LGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIY 216 (435)
Q Consensus 149 Gv~r-~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~Ii 216 (435)
..|+ ++.+ .+++.++++.+.|++.+.+...-. ...+. .--.+...++.||+.+|++.+.
T Consensus 35 ~~y~~~s~e-eI~~~a~~a~~~g~~~~~lv~sg~-~~~~~-------~~e~~~ei~~~ik~~~p~l~i~ 94 (279)
T PRK08508 35 KRYKRKDIE-QIVQEAKMAKANGALGFCLVTSGR-GLDDK-------KLEYVAEAAKAVKKEVPGLHLI 94 (279)
T ss_pred ccccCCCHH-HHHHHHHHHHHCCCCEEEEEeccC-CCCcc-------cHHHHHHHHHHHHhhCCCcEEE
Confidence 3566 5775 699999999999999988742101 01100 1135678999999999987653
No 117
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=76.22 E-value=49 Score=33.49 Aligned_cols=42 Identities=33% Similarity=0.439 Sum_probs=29.8
Q ss_pred hHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEeehh
Q 013861 361 YLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTY 421 (435)
Q Consensus 361 YLDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G~ide~~~v~Esl~~ikRAGAd~IiTY 421 (435)
-|+.|+++++..++||.+ +| |..+. +-++|.| +||||.+--|
T Consensus 225 al~~v~~v~~~~~ipIig---~G-----------GI~s~-~Da~e~l----~aGA~~Vqv~ 266 (325)
T cd04739 225 PLRWIAILSGRVKASLAA---SG-----------GVHDA-EDVVKYL----LAGADVVMTT 266 (325)
T ss_pred HHHHHHHHHcccCCCEEE---EC-----------CCCCH-HHHHHHH----HcCCCeeEEe
Confidence 478999999988999987 22 44444 3446655 3899998655
No 118
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=76.15 E-value=12 Score=36.78 Aligned_cols=179 Identities=20% Similarity=0.237 Sum_probs=103.4
Q ss_pred HHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHH-----HHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCccc
Q 013861 166 ARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVP-----RTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIM 240 (435)
Q Consensus 166 ~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~-----raIr~iK~~~Pdl~IitDVcLc~YTshGHcGIv~e~g~Id 240 (435)
+-+.|.+++.+=|- . -..+..+-+-|++. ..++.|-+.. ++=|++|. ++|+=+
T Consensus 25 ~e~~Gf~ai~~sg~-~-----~a~s~G~pD~~~lt~~e~~~~~~~I~~~~-~iPv~vD~---------------d~GyG~ 82 (238)
T PF13714_consen 25 AERAGFDAIATSGA-G-----VAASLGYPDGGLLTLTEMLAAVRRIARAV-SIPVIVDA---------------DTGYGN 82 (238)
T ss_dssp HHHTT-SEEEEHHH-H-----HHHHTTS-SSS-S-HHHHHHHHHHHHHHS-SSEEEEE----------------TTTSSS
T ss_pred HHHcCCCEEEechH-H-----HHHHcCCCCCCCCCHHHHHHHHHHHHhhh-cCcEEEEc---------------ccccCc
Confidence 34559999877221 0 01122222224433 5677777766 78888885 345433
Q ss_pred cHHHHHHHHHHHHHHHHcCCCeecCCCC--------------CCchHHHHHHHHHHCCCCCceeechhhhhcccccccch
Q 013861 241 NDETVHQLCKQAVSQARAGADVVSPSDM--------------MDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFR 306 (435)
Q Consensus 241 ND~Tv~~Lak~Avs~A~AGADiVAPSDM--------------MDGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFR 306 (435)
+-..+.+. .-.+.+||+.-|--.|= |=+||.+++++.++.| .-|++-+--|..
T Consensus 83 ~~~~v~~t---v~~~~~aG~agi~IEDq~~~~~~~~l~~~ee~~~kI~Aa~~a~~~~~---~~I~ARTDa~~~------- 149 (238)
T PF13714_consen 83 DPENVART---VRELERAGAAGINIEDQRCGHGGKQLVSPEEMVAKIRAAVDARRDPD---FVIIARTDAFLR------- 149 (238)
T ss_dssp SHHHHHHH---HHHHHHCT-SEEEEESBSTTTSTT-B--HHHHHHHHHHHHHHHSSTT---SEEEEEECHHCH-------
T ss_pred hhHHHHHH---HHHHHHcCCcEEEeeccccCCCCCceeCHHHHHHHHHHHHHhccCCe---EEEEEecccccc-------
Confidence 23333333 33456777766655555 3345555555555554 677766543322
Q ss_pred hhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhCCCCeEEEEechHHH
Q 013861 307 EALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYS 386 (435)
Q Consensus 307 dA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~~lPvaaYqVSGEYa 386 (435)
.....+||++.+..=.+-|||+|+ | |++.-.|-|+++.+.++.|+..-. .+..
T Consensus 150 -----------------~~~~~deaI~R~~aY~eAGAD~if-------i-~~~~~~~~i~~~~~~~~~Pl~v~~-~~~~- 202 (238)
T PF13714_consen 150 -----------------AEEGLDEAIERAKAYAEAGADMIF-------I-PGLQSEEEIERIVKAVDGPLNVNP-GPGT- 202 (238)
T ss_dssp -----------------HHHHHHHHHHHHHHHHHTT-SEEE-------E-TTSSSHHHHHHHHHHHSSEEEEET-TSSS-
T ss_pred -----------------CCCCHHHHHHHHHHHHHcCCCEEE-------e-CCCCCHHHHHHHHHhcCCCEEEEc-CCCC-
Confidence 223467899999998999999999 4 566677778999888899977655 2211
Q ss_pred HHHHHHHCCCCchhhHHHHHHHHHHHhcccEeehhcHH
Q 013861 387 MIKAGGALKMIDEQRVMMESLMCLRRAGADIILTYFAL 424 (435)
Q Consensus 387 MikaAa~~G~ide~~~v~Esl~~ikRAGAd~IiTYfA~ 424 (435)
-++..+++.|..+|+.-...
T Consensus 203 ------------------~~~~eL~~lGv~~v~~~~~~ 222 (238)
T PF13714_consen 203 ------------------LSAEELAELGVKRVSYGNSL 222 (238)
T ss_dssp ------------------S-HHHHHHTTESEEEETSHH
T ss_pred ------------------CCHHHHHHCCCcEEEEcHHH
Confidence 34446777788887654443
No 119
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=75.74 E-value=10 Score=39.12 Aligned_cols=49 Identities=16% Similarity=0.192 Sum_probs=35.8
Q ss_pred HHHHHHHHHHcCC--CeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEe-eec
Q 013861 159 LVQEVAKARDVGV--NSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYT-DVA 220 (435)
Q Consensus 159 l~~~v~~~~~~GI--~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~Iit-DVc 220 (435)
-.+++.++++.|+ ..+.| +-.+ .....++..|+.||+.+|++.||+ ||+
T Consensus 98 ~~~~~~~Lv~ag~~~d~i~i----D~a~---------gh~~~~~e~I~~ir~~~p~~~vi~g~V~ 149 (326)
T PRK05458 98 EYDFVDQLAAEGLTPEYITI----DIAH---------GHSDSVINMIQHIKKHLPETFVIAGNVG 149 (326)
T ss_pred HHHHHHHHHhcCCCCCEEEE----ECCC---------CchHHHHHHHHHHHhhCCCCeEEEEecC
Confidence 5788999999976 75555 1111 334567888999999999988887 665
No 120
>PRK01362 putative translaldolase; Provisional
Probab=75.48 E-value=13 Score=36.05 Aligned_cols=77 Identities=32% Similarity=0.405 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHcCCCeecCC-CCC-----C--chHHHHHHHHHHCCCCCceeechhhhhcccccccchhhhcCCCCCCCc
Q 013861 247 QLCKQAVSQARAGADVVSPS-DMM-----D--GRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDK 318 (435)
Q Consensus 247 ~Lak~Avs~A~AGADiVAPS-DMM-----D--GrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRdA~~Sap~fgDR 318 (435)
.-..||+.-|+|||+.|||= +-| | ..|..|++.++..|+ ++-||+=|.|
T Consensus 110 fs~~Qa~~Aa~aGa~yispyvgRi~d~g~dg~~~i~~~~~~~~~~~~-~tkilaAS~r---------------------- 166 (214)
T PRK01362 110 FSANQALLAAKAGATYVSPFVGRLDDIGTDGMELIEDIREIYDNYGF-DTEIIAASVR---------------------- 166 (214)
T ss_pred cCHHHHHHHHhcCCcEEEeecchHhhcCCCHHHHHHHHHHHHHHcCC-CcEEEEeecC----------------------
Confidence 34679999999999999992 111 2 236677888888885 6777765543
Q ss_pred cccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHh
Q 013861 319 KTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRD 370 (435)
Q Consensus 319 ktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~ 370 (435)
|..+.+..+. .|+|.+- |- .||++++-+
T Consensus 167 --------~~~~v~~~~~----~G~d~iT-------i~-----~~vl~~l~~ 194 (214)
T PRK01362 167 --------HPMHVLEAAL----AGADIAT-------IP-----YKVIKQLFK 194 (214)
T ss_pred --------CHHHHHHHHH----cCCCEEe-------cC-----HHHHHHHHc
Confidence 6666555543 4999888 43 467777643
No 121
>PRK09549 mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate enolase; Reviewed
Probab=75.43 E-value=8 Score=41.08 Aligned_cols=136 Identities=29% Similarity=0.350 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHHHcCCCeec--------CCCCCCchHHHHHHHHHHCCCCCceeechhhhhcccccccchhhhcCCCC
Q 013861 243 ETVHQLCKQAVSQARAGADVVS--------PSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPR 314 (435)
Q Consensus 243 ~Tv~~Lak~Avs~A~AGADiVA--------PSDMMDGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRdA~~Sap~ 314 (435)
-|-+.+++++..++..|.|+|= |-.=++=||.+..++++++. +.
T Consensus 147 Lsp~~~a~~~y~~~~GGvD~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a~-------------------------~e--- 198 (407)
T PRK09549 147 RDLDYLKEQLRDQALGGVDLVKDDEILFENALTPFEKRIVAGKEVLQEVY-------------------------ET--- 198 (407)
T ss_pred CCHHHHHHHHHHHHhcCCcceecCcCCCCCCCcCHHHHHHHHHHHHHHHH-------------------------Hh---
Confidence 4678899999999999999873 22222334444444443321 11
Q ss_pred CCCccccCCCCCC-HHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHh--hCCCCeEEE-EechHHHHHHH
Q 013861 315 FGDKKTYQMNPAN-YREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRD--KYPLPIAAY-QVSGEYSMIKA 390 (435)
Q Consensus 315 fgDRktYQmdp~N-~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~--~~~lPvaaY-qVSGEYaMika 390 (435)
-|.++-|-+|-.. ..|.++.+..=.++|++++| |-|...=++.++.+++ .++|||-+- ..+|-|. .
T Consensus 199 TG~~~~y~~NiT~~~~em~~ra~~a~~~G~~~~m-------~~~~~~G~~al~~l~~~~~~~lpIhaHra~~ga~~--r- 268 (407)
T PRK09549 199 TGHKTLYAVNLTGRTFELKEKAKRAAEAGADALL-------FNVFAYGLDVLQSLAEDPEIPVPIMAHPAVSGAYT--P- 268 (407)
T ss_pred hCCcceEEEecCCCHHHHHHHHHHHHHcCCCeEE-------EeccccchHHHHHHHhcCCCCcEEEecCCcccccc--c-
Confidence 2677888887654 36777777777789999999 9887666999999998 557887531 2222221 1
Q ss_pred HHHCCCCchhhHHHHHHHHHHHhcccEeeh
Q 013861 391 GGALKMIDEQRVMMESLMCLRRAGADIILT 420 (435)
Q Consensus 391 Aa~~G~ide~~~v~Esl~~ikRAGAd~IiT 420 (435)
.-+.|+ +. .+++= +-+|-||||.|++
T Consensus 269 ~~~~Gi-s~-~~~l~--kl~RLaGaD~~~~ 294 (407)
T PRK09549 269 SPLYGI-SS-PLLLG--KLLRYAGADFSLF 294 (407)
T ss_pred CCCCcC-cH-HHHHH--HHHHHcCCCcccc
Confidence 112333 11 12333 3456699999986
No 122
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=74.95 E-value=19 Score=35.40 Aligned_cols=101 Identities=24% Similarity=0.329 Sum_probs=65.8
Q ss_pred CCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCc----------hHHHHHHHHhhCCCCeEEEEech
Q 013861 314 RFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLP----------YLDVIRLLRDKYPLPIAAYQVSG 383 (435)
Q Consensus 314 ~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~----------YLDIIr~vk~~~~lPvaaYqVSG 383 (435)
+|-|...| ...++++..+..-+++|||+|=.. |.--.|+.. -..+|+.+++.+++||..= |-
T Consensus 12 SF~dg~~~----~~~~~~~~~a~~~~~~GA~iIDIG--~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~plsiD--T~ 83 (257)
T TIGR01496 12 SFSDGGRF----LSVDKAVAHAERMLEEGADIIDVG--GESTRPGADRVSPEEELNRVVPVIKALRDQPDVPISVD--TY 83 (257)
T ss_pred CCCCCCCC----CCHHHHHHHHHHHHHCCCCEEEEC--CCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEe--CC
Confidence 46565444 245889999999999999999821 111246544 3466778888889998643 44
Q ss_pred HHHHHHHHHHCC--CCchhhH--HHHHHHHHHHhcccEeehhc
Q 013861 384 EYSMIKAGGALK--MIDEQRV--MMESLMCLRRAGADIILTYF 422 (435)
Q Consensus 384 EYaMikaAa~~G--~ide~~~--v~Esl~~ikRAGAd~IiTYf 422 (435)
....+++|.+.| +|+.=.. .-|.+.-+++.|+.+|+.+.
T Consensus 84 ~~~vi~~al~~G~~iINsis~~~~~~~~~l~~~~~~~vV~m~~ 126 (257)
T TIGR01496 84 RAEVARAALEAGADIINDVSGGQDPAMLEVAAEYGVPLVLMHM 126 (257)
T ss_pred CHHHHHHHHHcCCCEEEECCCCCCchhHHHHHHcCCcEEEEeC
Confidence 556777777777 3332111 22355558889999999764
No 123
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=73.92 E-value=19 Score=36.34 Aligned_cols=115 Identities=19% Similarity=0.177 Sum_probs=62.0
Q ss_pred hHHHHHHHHHHcCCCeEEE----eecCCCCCCCcccCcCcCCCCCHHHHHHHHHHH--CCCeEEEeeecccCCCCCCcce
Q 013861 158 GLVQEVAKARDVGVNSVVL----FPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDR--YPDLVIYTDVALDPYSSDGHDG 231 (435)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~L----Fgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~--~Pdl~IitDVcLc~YTshGHcG 231 (435)
.+.+.|+++.+.|+-.+.| ||+-- .+-...|+...-+..-..+-|++.++. -++++|++=+. .|.. +
T Consensus 93 ~v~r~V~~l~~aGvaGi~iEDq~~pk~c-g~~~~~~~~~l~s~ee~~~kI~Aa~~a~~~~~~~IiARTD--a~~~-~--- 165 (285)
T TIGR02320 93 HFRRLVRKLERRGVSAVCIEDKLGLKKN-SLFGNDVAQPQASVEEFCGKIRAGKDAQTTEDFMIIARVE--SLIL-G--- 165 (285)
T ss_pred HHHHHHHHHHHcCCeEEEEeccCCCccc-cccCCCCcccccCHHHHHHHHHHHHHhccCCCeEEEEecc--cccc-c---
Confidence 4788899999999999988 54310 001111111222223345667777765 46788875321 2210 0
Q ss_pred eecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCC-CCCc-hHHHHHHHHHHCCCCCceee
Q 013861 232 IVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSD-MMDG-RVGAIRAALDAEGFQHVSIM 291 (435)
Q Consensus 232 Iv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSD-MMDG-rVgAIR~aLD~~Gf~~v~IM 291 (435)
.| =|++++ .|..+++||||+|-+-. +-|. .+..+-+.++.. |.++++|
T Consensus 166 ----~~---~~eAi~----Ra~ay~eAGAD~ifv~~~~~~~~ei~~~~~~~~~~-~p~~pl~ 215 (285)
T TIGR02320 166 ----KG---MEDALK----RAEAYAEAGADGIMIHSRKKDPDEILEFARRFRNH-YPRTPLV 215 (285)
T ss_pred ----CC---HHHHHH----HHHHHHHcCCCEEEecCCCCCHHHHHHHHHHhhhh-CCCCCEE
Confidence 12 145554 47889999999998763 3332 333444444311 2345555
No 124
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=73.90 E-value=11 Score=36.15 Aligned_cols=72 Identities=36% Similarity=0.535 Sum_probs=48.0
Q ss_pred HHHHHHHHHcCCCeecCCCCCCch-----------HHHHHHHHHHCCCCCceeechhhhhcccccccchhhhcCCCCCCC
Q 013861 249 CKQAVSQARAGADVVSPSDMMDGR-----------VGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGD 317 (435)
Q Consensus 249 ak~Avs~A~AGADiVAPSDMMDGr-----------VgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRdA~~Sap~fgD 317 (435)
..||..-++|||++|||- =|| |..+++.++..|+ ++-||.=|.|
T Consensus 112 ~~Qa~~Aa~AGA~yvsP~---vgR~~~~g~dg~~~i~~i~~~~~~~~~-~tkil~As~r--------------------- 166 (211)
T cd00956 112 AAQALLAAKAGATYVSPF---VGRIDDLGGDGMELIREIRTIFDNYGF-DTKILAASIR--------------------- 166 (211)
T ss_pred HHHHHHHHHcCCCEEEEe---cChHhhcCCCHHHHHHHHHHHHHHcCC-CceEEecccC---------------------
Confidence 578999999999999993 455 5566666666664 4445443322
Q ss_pred ccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHh
Q 013861 318 KKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRD 370 (435)
Q Consensus 318 RktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~ 370 (435)
|..|.+... +-|||++- |-| ||++++.+
T Consensus 167 ---------~~~ei~~a~----~~Gad~vT-------v~~-----~vl~~l~~ 194 (211)
T cd00956 167 ---------NPQHVIEAA----LAGADAIT-------LPP-----DVLEQLLK 194 (211)
T ss_pred ---------CHHHHHHHH----HcCCCEEE-------eCH-----HHHHHHhc
Confidence 667766644 36999998 543 56666544
No 125
>PRK12655 fructose-6-phosphate aldolase; Reviewed
Probab=73.88 E-value=14 Score=36.04 Aligned_cols=79 Identities=25% Similarity=0.293 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHcCCCeecCC-CCC-----Cc--hHHHHHHHHHHCCCCCceeechhhhhcccccccchhhhcCCCCC
Q 013861 244 TVHQLCKQAVSQARAGADVVSPS-DMM-----DG--RVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRF 315 (435)
Q Consensus 244 Tv~~Lak~Avs~A~AGADiVAPS-DMM-----DG--rVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRdA~~Sap~f 315 (435)
|+=.-..||+.-|+|||+.|||= +-| || .|..|++.++..|+ ++-||+=|.|
T Consensus 109 T~vfs~~Qa~~Aa~aGa~yIspyvgR~~~~g~dg~~~i~~~~~~~~~~~~-~tkILaAS~r------------------- 168 (220)
T PRK12655 109 TAVYSAAQGLLAALAGAKYVAPYVNRVDAQGGDGIRMVQELQTLLEMHAP-ESMVLAASFK------------------- 168 (220)
T ss_pred eEecCHHHHHHHHHcCCeEEEeecchHhHcCCCHHHHHHHHHHHHHhcCC-CcEEEEEecC-------------------
Confidence 33344678899999999999993 111 22 25566666766665 5666654433
Q ss_pred CCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHH
Q 013861 316 GDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLR 369 (435)
Q Consensus 316 gDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk 369 (435)
|.++.+..+. -|+|++- +- .||++++-
T Consensus 169 -----------~~~~v~~~~~----~G~d~vT-------ip-----~~vl~~l~ 195 (220)
T PRK12655 169 -----------TPRQALDCLL----AGCQSIT-------LP-----LDVAQQML 195 (220)
T ss_pred -----------CHHHHHHHHH----cCCCEEE-------CC-----HHHHHHHH
Confidence 6677666544 6999998 43 46776664
No 126
>PRK07360 FO synthase subunit 2; Reviewed
Probab=73.79 E-value=6.6 Score=40.28 Aligned_cols=57 Identities=18% Similarity=0.311 Sum_probs=42.4
Q ss_pred CceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEE
Q 013861 149 GCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVI 215 (435)
Q Consensus 149 Gv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~I 215 (435)
..|+++.+ .+++.++++.+.|++.|.|-+-..+..+ +-..+...++.||+.+|++-|
T Consensus 87 ~~y~ls~e-eI~~~a~~a~~~G~~~i~l~~G~~p~~~---------~~e~~~~~i~~ik~~~~~i~i 143 (371)
T PRK07360 87 GAFWLTIA-EILEKAAEAVKRGATEVCIQGGLHPAAD---------SLEFYLEILEAIKEEFPDIHL 143 (371)
T ss_pred CCeeCCHH-HHHHHHHHHHhCCCCEEEEccCCCCCCC---------cHHHHHHHHHHHHHhCCCcce
Confidence 55788986 5999999999999999998652111111 234577999999999998664
No 127
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=73.01 E-value=1.1e+02 Score=37.29 Aligned_cols=222 Identities=16% Similarity=0.139 Sum_probs=128.2
Q ss_pred hHHHHHHH-HHHcCCCeEEE--eecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHC-------C--CeEEEeeecccCCC
Q 013861 158 GLVQEVAK-ARDVGVNSVVL--FPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRY-------P--DLVIYTDVALDPYS 225 (435)
Q Consensus 158 ~l~~~v~~-~~~~GI~sv~L--Fgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~-------P--dl~IitDVcLc~YT 225 (435)
++++++.+ -++.|-.-+.. |+--+..++ +.|-+ ..-.-+..+++++-|+.. | ...|..+ +.||+
T Consensus 65 e~I~~IH~~Yl~AGADII~TNTF~a~~~~L~-~ygl~-~~~~eln~~av~LAreAa~~~~~~~~~~~~~VAGS--IGP~g 140 (1229)
T PRK09490 65 DVIEAIHRAYLEAGADIIETNTFNATTIAQA-DYGME-SLVYELNFAAARLAREAADEWTAKTPDKPRFVAGV--LGPTN 140 (1229)
T ss_pred HHHHHHHHHHHHHhCceeecCCCCCCHHHHh-hCChH-HHHHHHHHHHHHHHHHHHHHhhhccCCCceEEEEe--cCCCC
Confidence 47777775 57899763322 553221111 11211 001234456677666543 2 3566666 45776
Q ss_pred CCCcc--eeec-CCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCc-----hHHHHHHHHHHCCCCCceeec-hhhh
Q 013861 226 SDGHD--GIVR-EDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDG-----RVGAIRAALDAEGFQHVSIMS-YTAK 296 (435)
Q Consensus 226 shGHc--GIv~-e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMMDG-----rVgAIR~aLD~~Gf~~v~IMS-YSaK 296 (435)
...+. |+-+ .-+.+.-|+-.+...+|+-.+.++|+|++.---|.|- =+.++|+.+.+.| .+++||- .+
T Consensus 141 ~~~sl~p~~e~pg~~~it~del~~~y~eQi~~L~e~GVDllliETi~d~~EakAal~a~~~~~~~~~-~~lPv~vS~T-- 217 (1229)
T PRK09490 141 RTASISPDVNDPGFRNVTFDELVAAYREQTRGLIEGGADLILIETIFDTLNAKAAIFAVEEVFEELG-VRLPVMISGT-- 217 (1229)
T ss_pred cccccCCCcccccccCCCHHHHHHHHHHHHHHHHhCCCCEEEEeeeCCHHHHHHHHHHHHHHHhhcC-CCCeEEEEEE--
Confidence 44331 1111 0134777888899999999999999999999999993 4555566555555 4677662 22
Q ss_pred hcccccccchhhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEecccC-CCcccCCCchHHHHHHHHhhCCCC
Q 013861 297 YASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVL-GSQVKPGLPYLDVIRLLRDKYPLP 375 (435)
Q Consensus 297 yASafYGPFRdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~-~~~VKPal~YLDIIr~vk~~~~lP 375 (435)
|.|.-+ .-++=.+. |++..... ..|+|.|.+..- | |. .-..+|+.+.+..+.|
T Consensus 218 --------~~d~~G----------r~lsG~~~-ea~~~~l~--~~~~~avGlNCs~G----P~-~m~~~l~~l~~~~~~p 271 (1229)
T PRK09490 218 --------ITDASG----------RTLSGQTT-EAFWNSLR--HAKPLSIGLNCALG----AD-ELRPYVEELSRIADTY 271 (1229)
T ss_pred --------EECCCC----------ccCCCCcH-HHHHHHHh--cCCCCEEEEcCCCc----HH-HHHHHHHHHHHhcCCe
Confidence 222111 11111223 44444333 578998883332 2 22 3467788888888999
Q ss_pred eEEEEechHHHHHHHHHHCCCCch-hhHHHHHHHHHHHhc-ccEe
Q 013861 376 IAAYQVSGEYSMIKAGGALKMIDE-QRVMMESLMCLRRAG-ADII 418 (435)
Q Consensus 376 vaaYqVSGEYaMikaAa~~G~ide-~~~v~Esl~~ikRAG-Ad~I 418 (435)
+.+|-=+|.=. ..|.+|+ ...+-|.+..+.+.| +.+|
T Consensus 272 i~vyPNAGlP~------~~~~yd~tPe~~a~~~~~~~~~G~v~II 310 (1229)
T PRK09490 272 VSAHPNAGLPN------AFGEYDETPEEMAAQIGEFAESGFLNIV 310 (1229)
T ss_pred EEEEeCCCCCC------CCCCCCCCHHHHHHHHHHHHHcCCCCEE
Confidence 99998877311 1122332 245678888888899 6765
No 128
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=72.94 E-value=26 Score=34.07 Aligned_cols=92 Identities=24% Similarity=0.279 Sum_probs=62.3
Q ss_pred CCHHHHHHHHHhcccccccEEecccCC-CcccCCC----------chHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHC
Q 013861 326 ANYREALVEAQADESEGADILLFSVLG-SQVKPGL----------PYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGAL 394 (435)
Q Consensus 326 ~N~~EAlre~~~D~~EGADilM~~~~~-~~VKPal----------~YLDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~ 394 (435)
.+.++++..+..-+++|||||= +| .--+|+- -...+|+.+++.+++||..= |-....+++|.+.
T Consensus 21 ~~~~~~~~~a~~~~~~GAdiID---vG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~~~piSID--T~~~~v~~aaL~~ 95 (258)
T cd00423 21 LSLDKALEHARRMVEEGADIID---IGGESTRPGAEPVSVEEELERVIPVLRALAGEPDVPISVD--TFNAEVAEAALKA 95 (258)
T ss_pred CCHHHHHHHHHHHHHCCCCEEE---ECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcCCCeEEEe--CCcHHHHHHHHHh
Confidence 4678999999999999999998 22 2234552 36788889988888887431 4556788888887
Q ss_pred C--CCchhhHH---HHHHHHHHHhcccEeehhc
Q 013861 395 K--MIDEQRVM---MESLMCLRRAGADIILTYF 422 (435)
Q Consensus 395 G--~ide~~~v---~Esl~~ikRAGAd~IiTYf 422 (435)
| +|+.=... -|.+.-+++.|+-+|+...
T Consensus 96 g~~iINdis~~~~~~~~~~l~~~~~~~vV~m~~ 128 (258)
T cd00423 96 GADIINDVSGGRGDPEMAPLAAEYGAPVVLMHM 128 (258)
T ss_pred CCCEEEeCCCCCCChHHHHHHHHcCCCEEEECc
Confidence 6 22211000 2334456778999999763
No 129
>CHL00040 rbcL ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit
Probab=72.90 E-value=11 Score=40.98 Aligned_cols=135 Identities=14% Similarity=0.060 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHHHHcCCCeecCC--------CCCCchHHHHHHHHHHCCCCCceeechhhhhcccccccchhhhcCCCC
Q 013861 243 ETVHQLCKQAVSQARAGADVVSPS--------DMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPR 314 (435)
Q Consensus 243 ~Tv~~Lak~Avs~A~AGADiVAPS--------DMMDGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRdA~~Sap~ 314 (435)
-|-+.+++++..++..|.|+|==- .=++=||.++.++++++. + .
T Consensus 180 Lsp~~~A~~~y~~~~GGvD~IKDDE~l~dq~~~p~~eRv~~~~~a~~~a~-------------------------~---e 231 (475)
T CHL00040 180 LSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIYKAQ-------------------------A---E 231 (475)
T ss_pred CCHHHHHHHHHHHHcCCCcccccCccCCCCCCCCHHHHHHHHHHHHHHHH-------------------------H---h
Confidence 467889999999999999987311 112233443333333321 1 1
Q ss_pred CCCccccCCCCC--CHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHh---hCCCCeEEEE-echHHHHH
Q 013861 315 FGDKKTYQMNPA--NYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRD---KYPLPIAAYQ-VSGEYSMI 388 (435)
Q Consensus 315 fgDRktYQmdp~--N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~---~~~lPvaaYq-VSGEYaMi 388 (435)
-|.++.|-+|.. ...|.++.++.=.++|++.+| |-|...=++.++.+++ ..++||-+-- .+|-|.
T Consensus 232 TG~~~~y~~NiTa~~~~em~~ra~~a~e~G~~~~m-------v~~~~~G~~al~~l~~~~~~~~l~IhaHrA~~ga~~-- 302 (475)
T CHL00040 232 TGEIKGHYLNATAGTCEEMYKRAVFARELGVPIVM-------HDYLTGGFTANTSLAHYCRDNGLLLHIHRAMHAVID-- 302 (475)
T ss_pred hCCcceeeeccCCCCHHHHHHHHHHHHHcCCceEE-------EeccccccchHHHHHHHhhhcCceEEeccccccccc--
Confidence 277888888876 589999999998999999999 8888766888999885 5789986522 222211
Q ss_pred HHHHHCCCCchhhHHHHHHHHHHHhcccEeeh
Q 013861 389 KAGGALKMIDEQRVMMESLMCLRRAGADIILT 420 (435)
Q Consensus 389 kaAa~~G~ide~~~v~Esl~~ikRAGAd~IiT 420 (435)
..-..|+- . .++= +-+|=||||.|.+
T Consensus 303 -r~~~~Gis-~--~vl~--KL~RLaGaD~ih~ 328 (475)
T CHL00040 303 -RQKNHGIH-F--RVLA--KALRMSGGDHIHA 328 (475)
T ss_pred -cCccCCCc-H--HHHH--HHHHHcCCCcccc
Confidence 11133442 2 2232 2346699999843
No 130
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=72.64 E-value=27 Score=37.73 Aligned_cols=222 Identities=18% Similarity=0.174 Sum_probs=125.4
Q ss_pred hhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecC
Q 013861 156 RHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVRE 235 (435)
Q Consensus 156 ~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTshGHcGIv~e 235 (435)
++-+...++.+.+.|+..|-+|--+.+ . --+.++|+..|+..-. +. .|+| ||..-
T Consensus 94 dDvv~~fv~~A~~~Gvd~irif~~lnd-~------------~n~~~~i~~ak~~G~~--v~--~~i~-~t~~p------- 148 (467)
T PRK14041 94 DDVVELFVKKVAEYGLDIIRIFDALND-I------------RNLEKSIEVAKKHGAH--VQ--GAIS-YTVSP------- 148 (467)
T ss_pred chhhHHHHHHHHHCCcCEEEEEEeCCH-H------------HHHHHHHHHHHHCCCE--EE--EEEE-eccCC-------
Confidence 333455589999999999999865432 1 1267788888877532 22 3342 22110
Q ss_pred CCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC--------chHHHHHHHHHH-CCC--CCceeechhhhhccccccc
Q 013861 236 DGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMD--------GRVGAIRAALDA-EGF--QHVSIMSYTAKYASSFYGP 304 (435)
Q Consensus 236 ~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMMD--------GrVgAIR~aLD~-~Gf--~~v~IMSYSaKyASafYGP 304 (435)
.. |++.+.+.|-...++|||.|+-.||.= =.|.+||+.++- -++ +|+.=|+-+.-.+..-.|-
T Consensus 149 ---~~---t~e~~~~~a~~l~~~Gad~I~i~Dt~G~l~P~~v~~Lv~~lk~~~~vpI~~H~Hnt~GlA~AN~laAieaGa 222 (467)
T PRK14041 149 ---VH---TLEYYLEFARELVDMGVDSICIKDMAGLLTPKRAYELVKALKKKFGVPVEVHSHCTTGLASLAYLAAVEAGA 222 (467)
T ss_pred ---CC---CHHHHHHHHHHHHHcCCCEEEECCccCCcCHHHHHHHHHHHHHhcCCceEEEecCCCCcHHHHHHHHHHhCC
Confidence 11 466777777778889999999999974 356677776530 011 4555566665555555552
Q ss_pred chhhhcCCC-CCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhC-CCC-------
Q 013861 305 FREALDSNP-RFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKY-PLP------- 375 (435)
Q Consensus 305 FRdA~~Sap-~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~-~lP------- 375 (435)
|.++++- .||-+.+ |.+-..--.+|+. ...+-|-|+-. +... -+.++.+++++ .+|
T Consensus 223 --d~vD~sv~~~g~gag-N~atE~lv~~L~~--~g~~tgiDl~~-------L~~~---~~~~~~vr~~y~~~~~~~~~~~ 287 (467)
T PRK14041 223 --DMFDTAISPFSMGTS-QPPFESMYYAFRE--NGKETDFDRKA-------LKFL---VEYFTKVREKYSEYDVGMKSPD 287 (467)
T ss_pred --CEEEeeccccCCCCC-ChhHHHHHHHHHh--cCCCCCcCHHH-------HHHH---HHHHHHHHHHHhhcCCCCCCCC
Confidence 2344433 3666655 3322111122322 23344555544 4333 34444554444 333
Q ss_pred --eEEEEec-hHHHHHHH-HHHCCCCchhhHHHHHHHHHHHhcccEe-ehhcH
Q 013861 376 --IAAYQVS-GEYSMIKA-GGALKMIDEQRVMMESLMCLRRAGADII-LTYFA 423 (435)
Q Consensus 376 --vaaYqVS-GEYaMika-Aa~~G~ide~~~v~Esl~~ikRAGAd~I-iTYfA 423 (435)
|--||+= |-|+-++. +.+.|..|.=.-|+|-+-..++..-+.| +|=+.
T Consensus 288 ~~v~~~q~PGG~~snl~~Ql~~~g~~~~~~~v~~e~~~v~~~lG~~~~VTP~S 340 (467)
T PRK14041 288 SRILVSQIPGGMYSNLVKQLKEQKMLHKLDKVLEEVPRVRKDLGYPPLVTPTS 340 (467)
T ss_pred cCeeeCCCCcchHHHHHHHHHHCCcHhHHHHHHHHHHHHHHHcCCCCcCCChh
Confidence 3345553 55665544 7778988865566666666666666666 55443
No 131
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=72.40 E-value=86 Score=29.39 Aligned_cols=126 Identities=16% Similarity=0.222 Sum_probs=64.6
Q ss_pred HHcCCCeecCCCCCCchHHHHHHHHHHCCCCCceeechhhhhcccccccchhhhcCCCCCCCccccCCCCCCHHHHHHHH
Q 013861 256 ARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEA 335 (435)
Q Consensus 256 A~AGADiVAPSDMMDGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRdA~~Sap~fgDRktYQmdp~N~~EAlre~ 335 (435)
.++|||.|--...+-.....+++..++.|-+.+ +.|--.|-- . +.. .|.+.+ ...+..+.+++.
T Consensus 91 ~~~Ga~~vvlgs~~l~d~~~~~~~~~~~g~~~i-~~sid~~~~--------~-v~~---~g~~~~---~~~~~~~~~~~~ 154 (230)
T TIGR00007 91 LDLGVDRVIIGTAAVENPDLVKELLKEYGPERI-VVSLDARGG--------E-VAV---KGWLEK---SEVSLEELAKRL 154 (230)
T ss_pred HHcCCCEEEEChHHhhCHHHHHHHHHHhCCCcE-EEEEEEECC--------E-EEE---cCCccc---CCCCHHHHHHHH
Confidence 347888544333333445667777777764333 333222210 0 100 122221 113444544444
Q ss_pred HhcccccccEEecccCCCcccCCCchHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcc
Q 013861 336 QADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGA 415 (435)
Q Consensus 336 ~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G~ide~~~v~Esl~~ikRAGA 415 (435)
. +.|+|-+++..+...-.=..+-+|.++++++..++|+.+ +| |.-+.+ -+..++..||
T Consensus 155 ~---~~g~~~ii~~~~~~~g~~~g~~~~~i~~i~~~~~ipvia---~G-----------Gi~~~~-----di~~~~~~Ga 212 (230)
T TIGR00007 155 E---ELGLEGIIYTDISRDGTLSGPNFELTKELVKAVNVPVIA---SG-----------GVSSID-----DLIALKKLGV 212 (230)
T ss_pred H---hCCCCEEEEEeecCCCCcCCCCHHHHHHHHHhCCCCEEE---eC-----------CCCCHH-----HHHHHHHCCC
Confidence 3 589995553322111111235699999999999999765 22 333332 2334456899
Q ss_pred cEee
Q 013861 416 DIIL 419 (435)
Q Consensus 416 d~Ii 419 (435)
|.++
T Consensus 213 dgv~ 216 (230)
T TIGR00007 213 YGVI 216 (230)
T ss_pred CEEE
Confidence 9766
No 132
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=71.98 E-value=4.7 Score=40.15 Aligned_cols=78 Identities=31% Similarity=0.340 Sum_probs=48.3
Q ss_pred cCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCc--hHHHHHHHHhhC-CCCeEEEEechHHHHHHHHHHCCCC
Q 013861 321 YQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLP--YLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMI 397 (435)
Q Consensus 321 YQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~--YLDIIr~vk~~~-~lPvaaYqVSGEYaMikaAa~~G~i 397 (435)
--+...|.+|+.+.+ +.|||+|| +-|-.+ .-.+++.++..+ ++|+.| -|-|
T Consensus 186 IgVev~t~eea~~A~----~~gaD~I~-------ld~~~p~~l~~~~~~~~~~~~~i~i~A---------------sGGI 239 (272)
T cd01573 186 IVVEVDSLEEALAAA----EAGADILQ-------LDKFSPEELAELVPKLRSLAPPVLLAA---------------AGGI 239 (272)
T ss_pred EEEEcCCHHHHHHHH----HcCCCEEE-------ECCCCHHHHHHHHHHHhccCCCceEEE---------------ECCC
Confidence 356777888877654 58999999 443211 113344444443 577654 4556
Q ss_pred chhhHHHHHHHHHHHhcccEeehhcHHHHHHHH
Q 013861 398 DEQRVMMESLMCLRRAGADIILTYFALQAARCL 430 (435)
Q Consensus 398 de~~~v~Esl~~ikRAGAd~IiTYfA~~~a~~L 430 (435)
++ |.+..+.++|+|.|.+-.--. ++|+
T Consensus 240 ~~-----~ni~~~~~~Gvd~I~vsai~~-a~~~ 266 (272)
T cd01573 240 NI-----ENAAAYAAAGADILVTSAPYY-AKPA 266 (272)
T ss_pred CH-----HHHHHHHHcCCcEEEEChhhc-Cccc
Confidence 65 556678999999996644333 4444
No 133
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=71.97 E-value=87 Score=29.27 Aligned_cols=39 Identities=18% Similarity=0.403 Sum_probs=25.8
Q ss_pred cccccEEecccCCCcccCCCchHHHHHHHHhhCCCCeEE
Q 013861 340 SEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAA 378 (435)
Q Consensus 340 ~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~~lPvaa 378 (435)
+-|+|-+++.-....-+...+-+++|+++++..++|+.+
T Consensus 157 ~~g~~~ii~~~~~~~g~~~G~d~~~i~~l~~~~~ipvia 195 (233)
T PRK00748 157 DAGVKAIIYTDISRDGTLSGPNVEATRELAAAVPIPVIA 195 (233)
T ss_pred hcCCCEEEEeeecCcCCcCCCCHHHHHHHHHhCCCCEEE
Confidence 348995552222222223346799999999999999886
No 134
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=71.97 E-value=23 Score=36.03 Aligned_cols=103 Identities=24% Similarity=0.276 Sum_probs=61.2
Q ss_pred hcccccccchhhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEeccc--CCCcccCCCc-----hHHHHHHHH
Q 013861 297 YASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSV--LGSQVKPGLP-----YLDVIRLLR 369 (435)
Q Consensus 297 yASafYGPFRdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~--~~~~VKPal~-----YLDIIr~vk 369 (435)
+.++| --.|+..-+-|-+..--..|..... .+-++++...+ +||.+-+.+ +-..+.|... ++|+|+.++
T Consensus 100 ~~~~~-~~vr~~~~~~p~i~nl~~~~~~~~~-~~~~~~~i~~i--~adal~i~ln~~q~~~~p~g~~~f~~~le~i~~i~ 175 (333)
T TIGR02151 100 TADTF-EVVREEAPNGPLIANIGAPQLVEGG-PEEAQEAIDMI--EADALAIHLNVLQELVQPEGDRNFKGWLEKIAEIC 175 (333)
T ss_pred hHhHH-HHHHHhCCCCcEEeecCchhhcccc-HHHHHHHHHHh--cCCCEEEcCcccccccCCCCCcCHHHHHHHHHHHH
Confidence 44555 4456655555655554455554333 44455555555 466665322 1222344432 469999999
Q ss_pred hhCCCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEeeh
Q 013861 370 DKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILT 420 (435)
Q Consensus 370 ~~~~lPvaaYqVSGEYaMikaAa~~G~ide~~~v~Esl~~ikRAGAd~IiT 420 (435)
+..++||.+=.| | .| ...|....+..+|+|+|.-
T Consensus 176 ~~~~vPVivK~~-g----------~g------~~~~~a~~L~~aGvd~I~V 209 (333)
T TIGR02151 176 SQLSVPVIVKEV-G----------FG------ISKEVAKLLADAGVSAIDV 209 (333)
T ss_pred HhcCCCEEEEec-C----------CC------CCHHHHHHHHHcCCCEEEE
Confidence 999999996544 3 12 1256777788889998864
No 135
>cd08213 RuBisCO_large_III Ribulose bisphosphate carboxylase large chain, Form III. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form III is only found in archaea and forms large subunit oligomers (dimers or decamers) that do not include small subunits.
Probab=71.59 E-value=9.7 Score=40.47 Aligned_cols=135 Identities=19% Similarity=0.231 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHHHHcCCCeecC--------CCCCCchHHHHHHHHHHCCCCCceeechhhhhcccccccchhhhcCCCC
Q 013861 243 ETVHQLCKQAVSQARAGADVVSP--------SDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPR 314 (435)
Q Consensus 243 ~Tv~~Lak~Avs~A~AGADiVAP--------SDMMDGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRdA~~Sap~ 314 (435)
-|-+.+++++..++..|.|+|== -.=+.-||.+..++++++. + .
T Consensus 144 lsp~~~a~~~y~~~~GGvD~iKDDE~l~~q~~~p~~~Rv~~~~~a~~~a~-------------------------~---e 195 (412)
T cd08213 144 LSPEEHAEVAYEALVGGVDLVKDDENLTSQPFNRFEERAKESLKARDKAE-------------------------A---E 195 (412)
T ss_pred CCHHHHHHHHHHHHhcCCcccccCccCCCCCCCCHHHHHHHHHHHHHHHH-------------------------H---h
Confidence 46788999999999999998731 1112233433333333321 1 1
Q ss_pred CCCccccCCCCCCH-HHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHh---hCCCCeEEE-EechHHHHHH
Q 013861 315 FGDKKTYQMNPANY-REALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRD---KYPLPIAAY-QVSGEYSMIK 389 (435)
Q Consensus 315 fgDRktYQmdp~N~-~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~---~~~lPvaaY-qVSGEYaMik 389 (435)
-|.++-|-+|.... .|.++.++.=.+.|++++| |-+...=++.++.+++ ..++||-+- ..+|-|. .
T Consensus 196 TG~~~~y~~NiT~~~~em~~ra~~a~e~G~~~~m-------v~~~~~G~~~l~~l~~~~~~~~l~ihaHra~~ga~~--r 266 (412)
T cd08213 196 TGERKAYLANITAPVREMERRAELVADLGGKYVM-------IDVVVAGWSALQYLRDLAEDYGLAIHAHRAMHAAFT--R 266 (412)
T ss_pred hCCcceEEEEecCCHHHHHHHHHHHHHhCCCeEE-------eeccccChHHHHHHHHhccccCeEEEECCCcceecc--c
Confidence 26788888876544 7778888888889999999 8888777999999998 457888651 1122211 0
Q ss_pred HHHHCCCCchhhHHHHHHHHHHHhcccEeeh
Q 013861 390 AGGALKMIDEQRVMMESLMCLRRAGADIILT 420 (435)
Q Consensus 390 aAa~~G~ide~~~v~Esl~~ikRAGAd~IiT 420 (435)
.-..|+ +. . ++= +-+|=||||.|++
T Consensus 267 -~~~~Gi-s~-~-~l~--kl~RLaGaD~ih~ 291 (412)
T cd08213 267 -NPRHGI-SM-L-VLA--KLYRLIGVDQLHI 291 (412)
T ss_pred -CCcCcC-cH-H-HHH--HHHHHcCCCcccc
Confidence 112343 22 1 232 2345689999985
No 136
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=71.58 E-value=13 Score=40.24 Aligned_cols=257 Identities=18% Similarity=0.166 Sum_probs=135.0
Q ss_pred CCCCCCChHHHhh-hhcCCCCCCCceeeEEEeeCCCCcccCCCCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCC
Q 013861 106 PRRNRKSPAMRAS-FQETNLSPANFVYPLFIHEGEEDTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDAL 184 (435)
Q Consensus 106 ~RRlR~~~~~R~l-~~Et~L~~~~LI~PlFV~eg~~~~~I~sMPGv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~ 184 (435)
.|-++-+||-|=- +++.- |+-.++=|+. |.+ .=|.-.|+ |+-+...++.+.+.||.-+-+|=.
T Consensus 64 ~rfl~edpwerlr~~r~~~--~nt~lqmLlR--G~n------~vgy~~yp-ddvv~~fv~~a~~~Gidi~Rifd~----- 127 (468)
T PRK12581 64 IRFLNEDPWERLRTLKKGL--PNTRLQMLLR--GQN------LLGYRHYA-DDIVDKFISLSAQNGIDVFRIFDA----- 127 (468)
T ss_pred hcccCCCHHHHHHHHHHhC--CCCceeeeec--ccc------ccCccCCc-chHHHHHHHHHHHCCCCEEEEccc-----
Confidence 4666777775511 33322 3334443333 554 23333444 333556788899999999888742
Q ss_pred CCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeec
Q 013861 185 KSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVS 264 (435)
Q Consensus 185 Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTshGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVA 264 (435)
+|+---+.++|+.+|+..-... +|+| ||.. -..|++.+.++|-...++|||.|+
T Consensus 128 --------lnd~~n~~~ai~~ak~~G~~~~----~~i~-yt~s-------------p~~t~~y~~~~a~~l~~~Gad~I~ 181 (468)
T PRK12581 128 --------LNDPRNIQQALRAVKKTGKEAQ----LCIA-YTTS-------------PVHTLNYYLSLVKELVEMGADSIC 181 (468)
T ss_pred --------CCCHHHHHHHHHHHHHcCCEEE----EEEE-EEeC-------------CcCcHHHHHHHHHHHHHcCCCEEE
Confidence 4555667889999998753322 4554 4331 122777777888778899999999
Q ss_pred CCCCCC--------chHHHHHHHHHH-CCC--CCceeechhhhhcccccccchhhhcCCC-CCCCccccCCCCCCHHHHH
Q 013861 265 PSDMMD--------GRVGAIRAALDA-EGF--QHVSIMSYTAKYASSFYGPFREALDSNP-RFGDKKTYQMNPANYREAL 332 (435)
Q Consensus 265 PSDMMD--------GrVgAIR~aLD~-~Gf--~~v~IMSYSaKyASafYGPFRdA~~Sap-~fgDRktYQmdp~N~~EAl 332 (435)
-.||.= =.|.+||+..+- -|| +|+.=|+.+.-.+..--|- +.++++- .||.+.+ |.+ . |.+
T Consensus 182 IkDtaG~l~P~~v~~Lv~alk~~~~~pi~~H~Hnt~GlA~An~laAieAGa--d~vD~ai~g~g~gag-N~~---t-E~l 254 (468)
T PRK12581 182 IKDMAGILTPKAAKELVSGIKAMTNLPLIVHTHATSGISQMTYLAAVEAGA--DRIDTALSPFSEGTS-QPA---T-ESM 254 (468)
T ss_pred ECCCCCCcCHHHHHHHHHHHHhccCCeEEEEeCCCCccHHHHHHHHHHcCC--CEEEeeccccCCCcC-Chh---H-HHH
Confidence 999864 235555554211 012 3444466555444443442 2233332 3555544 222 2 222
Q ss_pred HHHH--hcccccccEEecccCCCcccCCCchHHHHHHHHhhC-------------CCCeEEEEec-hHHHHHHH-HHHCC
Q 013861 333 VEAQ--ADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKY-------------PLPIAAYQVS-GEYSMIKA-GGALK 395 (435)
Q Consensus 333 re~~--~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~-------------~lPvaaYqVS-GEYaMika-Aa~~G 395 (435)
..+. .+.+-|-|+-. +...--| ++++++.+ +.=|--||+= |-|+=++. +.+.|
T Consensus 255 v~~L~~~g~~tgiDl~~-------L~~~a~~---~~~vr~~y~~~~~~~~~~~~~d~~v~~hqiPGGm~snl~~Ql~~~g 324 (468)
T PRK12581 255 YLALKEAGYDITLDETL-------LEQAANH---LRQARQKYLADGILDPSLLFPDPRTLQYQVPGGMLSNMLSQLKQAN 324 (468)
T ss_pred HHHHHhcCCCCCcCHHH-------HHHHHHH---HHHHHHHhcccccCCCccCCCCcceeeCCCCcchHHHHHHHHHHCC
Confidence 2222 24444555544 3333333 33444333 1223345553 45654443 67788
Q ss_pred CCchhhHHHHHHHHHHHhcccEe-ehh
Q 013861 396 MIDEQRVMMESLMCLRRAGADII-LTY 421 (435)
Q Consensus 396 ~ide~~~v~Esl~~ikRAGAd~I-iTY 421 (435)
..|.=.-|+|-.-..++..-+.| +|=
T Consensus 325 ~~dr~~ev~~e~~~V~~~lG~p~~VTP 351 (468)
T PRK12581 325 AESKLEEVLAEVPRVRKDLGYPPLVTP 351 (468)
T ss_pred cHhhHHHHHHHHHHHHHHcCCCCEECC
Confidence 87754444544444444443433 443
No 137
>PRK05926 hypothetical protein; Provisional
Probab=71.34 E-value=9.5 Score=39.59 Aligned_cols=88 Identities=24% Similarity=0.409 Sum_probs=56.6
Q ss_pred CCccccCCCCCCHHHHHHHHHhccccccc-EEecccCCCcccCC---CchHHHHHHHHhhCC-CCeEEEEech-HHHHHH
Q 013861 316 GDKKTYQMNPANYREALVEAQADESEGAD-ILLFSVLGSQVKPG---LPYLDVIRLLRDKYP-LPIAAYQVSG-EYSMIK 389 (435)
Q Consensus 316 gDRktYQmdp~N~~EAlre~~~D~~EGAD-ilM~~~~~~~VKPa---l~YLDIIr~vk~~~~-lPvaaYqVSG-EYaMik 389 (435)
++.+.|-|++.-..+..+++ +.|+. +.|.+ |- .|. -.|+|+++.+|+.++ +-+.+ .|| ||..++
T Consensus 92 ~~~~~~~ls~eeI~~~a~~a----~~G~~ei~iv~--G~--~p~~~~e~~~e~i~~Ik~~~p~i~i~a--~s~~Ei~~~~ 161 (370)
T PRK05926 92 GDPKGWFYTPDQLVQSIKEN----PSPITETHIVA--GC--FPSCNLAYYEELFSKIKQNFPDLHIKA--LTAIEYAYLS 161 (370)
T ss_pred CCcccccCCHHHHHHHHHHH----hcCCCEEEEEe--Cc--CCCCCHHHHHHHHHHHHHhCCCeeEEE--CCHHHHHHHH
Confidence 45667888775555555443 46776 44422 32 344 357999999999874 55555 455 788775
Q ss_pred HHHHCCCCchhhHHHHHHHHHHHhcccEeeh
Q 013861 390 AGGALKMIDEQRVMMESLMCLRRAGADIILT 420 (435)
Q Consensus 390 aAa~~G~ide~~~v~Esl~~ikRAGAd~IiT 420 (435)
. ..|+ ..-|.|..+|.||.|.+-.
T Consensus 162 ~--~~~~-----~~~e~l~~LkeAGl~~~~g 185 (370)
T PRK05926 162 K--LDNL-----PVKEVLQTLKIAGLDSIPG 185 (370)
T ss_pred h--hcCC-----CHHHHHHHHHHcCcCccCC
Confidence 3 2333 3456788999999998664
No 138
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=71.21 E-value=47 Score=34.75 Aligned_cols=135 Identities=16% Similarity=0.181 Sum_probs=85.4
Q ss_pred HHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHH-HHcCCCeecCCCCCCchHHHHHH
Q 013861 200 PRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQ-ARAGADVVSPSDMMDGRVGAIRA 278 (435)
Q Consensus 200 ~raIr~iK~~~Pdl~IitDVcLc~YTshGHcGIv~e~g~IdND~Tv~~Lak~Avs~-A~AGADiVAPSDMMDGrVgAIR~ 278 (435)
..-.+.+....|.-+|++|.=+-+|. .|.++..+-|... .++|||.|=-.|=..-++..||.
T Consensus 84 i~H~~aV~Rga~~a~vVaDmPfgSY~-----------------~s~e~av~nA~rl~~eaGa~aVKlEGg~~~~~~~I~~ 146 (332)
T PLN02424 84 LVHCRAVARGANRPLLVGDLPFGSYE-----------------SSTDQAVESAVRMLKEGGMDAVKLEGGSPSRVTAAKA 146 (332)
T ss_pred HHHHHHHhccCCCCEEEeCCCCCCCC-----------------CCHHHHHHHHHHHHHHhCCcEEEECCCcHHHHHHHHH
Confidence 34556677788999999999776661 1233444445555 57999999888643336788887
Q ss_pred HHHHCCCCCceeechhhhhcccccccchhhhcCCCCCCC-ccccCCC---CCCHHHHHHHHHhcccccccEEecccCCCc
Q 013861 279 ALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGD-KKTYQMN---PANYREALVEAQADESEGADILLFSVLGSQ 354 (435)
Q Consensus 279 aLD~~Gf~~v~IMSYSaKyASafYGPFRdA~~Sap~fgD-RktYQmd---p~N~~EAlre~~~D~~EGADilM~~~~~~~ 354 (435)
.- ++|. ++|.+ ++=+|+.-. -..|..- ....++.++.+..=.+-||+.|.
T Consensus 147 l~-~~GI---PV~gH---------------iGLtPQs~~~lGGykvqGr~~~~a~~li~dA~ale~AGAf~iv------- 200 (332)
T PLN02424 147 IV-EAGI---AVMGH---------------VGLTPQAISVLGGFRPQGRTAESAVKVVETALALQEAGCFAVV------- 200 (332)
T ss_pred HH-HcCC---CEEEe---------------ecccceeehhhcCccccCCCHHHHHHHHHHHHHHHHcCCcEEE-------
Confidence 66 7774 55544 222332100 0112221 11234555555555578999987
Q ss_pred ccCCCchHHHHHHHHhhCCCCeEEE
Q 013861 355 VKPGLPYLDVIRLLRDKYPLPIAAY 379 (435)
Q Consensus 355 VKPal~YLDIIr~vk~~~~lPvaaY 379 (435)
=|+.+-- +.+++.++..+|+...
T Consensus 201 -LE~Vp~~-la~~It~~l~IPtIGI 223 (332)
T PLN02424 201 -LECVPAP-VAAAITSALQIPTIGI 223 (332)
T ss_pred -EcCCcHH-HHHHHHHhCCCCEEee
Confidence 4666666 9999999999999754
No 139
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=70.94 E-value=7.5 Score=38.65 Aligned_cols=87 Identities=18% Similarity=0.148 Sum_probs=57.0
Q ss_pred cccchhhhcCCCC-CCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhCC--CCeEE
Q 013861 302 YGPFREALDSNPR-FGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYP--LPIAA 378 (435)
Q Consensus 302 YGPFRdA~~Sap~-fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~~--lPvaa 378 (435)
+|-+..++..+-+ +++.+--.+-..|.+||+... +.|||+|| +-| .+.+-++++.+..+ +|+.|
T Consensus 161 ~G~~~~av~~~r~~~~~~~~Igvev~t~eea~~A~----~~gaDyI~-------ld~--~~~e~lk~~v~~~~~~ipi~A 227 (265)
T TIGR00078 161 AGSIEKAVKRARAAAPFALKIEVEVESLEEAEEAA----EAGADIIM-------LDN--MKPEEIKEAVQLLKGRVLLEA 227 (265)
T ss_pred hCCHHHHHHHHHHhCCCCCeEEEEeCCHHHHHHHH----HcCCCEEE-------ECC--CCHHHHHHHHHHhcCCCcEEE
Confidence 3545555544332 343334566677888866553 68999999 655 46688888776543 77765
Q ss_pred EEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEeehh
Q 013861 379 YQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTY 421 (435)
Q Consensus 379 YqVSGEYaMikaAa~~G~ide~~~v~Esl~~ikRAGAd~IiTY 421 (435)
-|-|+.+ .+..+..+|+|.|-+-
T Consensus 228 ---------------sGGI~~~-----ni~~~a~~Gvd~Isvg 250 (265)
T TIGR00078 228 ---------------SGGITLD-----NLEEYAETGVDVISSG 250 (265)
T ss_pred ---------------ECCCCHH-----HHHHHHHcCCCEEEeC
Confidence 4567754 4567788999999773
No 140
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=70.83 E-value=14 Score=36.61 Aligned_cols=87 Identities=22% Similarity=0.300 Sum_probs=54.5
Q ss_pred cccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCC---CchHHHHHHHHhhC-CCCeEEEEechHHHHHHHHHHC
Q 013861 319 KTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPG---LPYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGAL 394 (435)
Q Consensus 319 ktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPa---l~YLDIIr~vk~~~-~lPvaaYqVSGEYaMikaAa~~ 394 (435)
+.|.+++....|.++++ .+.|++-+.+. -|. .|. -.|.++++.+|+.+ .+.+.++ ..+|...+ +...
T Consensus 32 ~~~~ls~eeI~~~~~~~---~~~G~~~i~l~-gg~--~~~~~~~~~~~i~~~Ik~~~~~i~~~~~-s~~e~~~~--~~~~ 102 (309)
T TIGR00423 32 DAYVLSLEEILEKVKEA---VAKGATEVCIQ-GGL--NPQLDIEYYEELFRAIKQEFPDVHIHAF-SPMEVYFL--AKNE 102 (309)
T ss_pred CcccCCHHHHHHHHHHH---HHCCCCEEEEe-cCC--CCCCCHHHHHHHHHHHHHHCCCceEEec-CHHHHHHH--HHHc
Confidence 46788775555544443 44687776643 221 232 24699999999987 3666665 23454433 3346
Q ss_pred CCCchhhHHHHHHHHHHHhcccEee
Q 013861 395 KMIDEQRVMMESLMCLRRAGADIIL 419 (435)
Q Consensus 395 G~ide~~~v~Esl~~ikRAGAd~Ii 419 (435)
|+.+ -|.|..+|+||.|.+.
T Consensus 103 g~~~-----~e~l~~LkeAGl~~i~ 122 (309)
T TIGR00423 103 GLSI-----EEVLKRLKKAGLDSMP 122 (309)
T ss_pred CCCH-----HHHHHHHHHcCCCcCC
Confidence 7665 3778889999999874
No 141
>TIGR03326 rubisco_III ribulose bisphosphate carboxylase, type III. Members of this protein family are the archaeal, single chain, type III form of ribulose bisphosphate carboxylase, or RuBisCO. Members act is a three-step pathway for conversion of the sugar moiety of AMP to two molecules of 3-phosphoglycerate. Many of these species use ADP-dependent sugar kinases, which form AMP, for glycolysis.
Probab=70.50 E-value=12 Score=39.69 Aligned_cols=136 Identities=18% Similarity=0.223 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHHHHcCCCeec--------CCCCCCchHHHHHHHHHHCCCCCceeechhhhhcccccccchhhhcCCCC
Q 013861 243 ETVHQLCKQAVSQARAGADVVS--------PSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPR 314 (435)
Q Consensus 243 ~Tv~~Lak~Avs~A~AGADiVA--------PSDMMDGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRdA~~Sap~ 314 (435)
-|-+.+++++..++..|.|+|= |-.=++-||.++.++++++. +.
T Consensus 157 lsp~~~a~~~~~~~~GGvD~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a~-------------------------~e--- 208 (412)
T TIGR03326 157 LSTEEHAKVAYELWSGGVDLLKDDENLTSQPFNRFEERVEKLYKVRDKVE-------------------------AE--- 208 (412)
T ss_pred CChHHHHHHHHHHHhcCCceeecCCCCCCCCCccHHHHHHHHHHHHHHHH-------------------------HH---
Confidence 4678899999999999999983 22234456666666664432 11
Q ss_pred CCCccccCCCCC-CHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHh---hCCCCeEEE-EechHHHHHH
Q 013861 315 FGDKKTYQMNPA-NYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRD---KYPLPIAAY-QVSGEYSMIK 389 (435)
Q Consensus 315 fgDRktYQmdp~-N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~---~~~lPvaaY-qVSGEYaMik 389 (435)
-|.++-|-.|-. ...|.++.++.=.++|++++| |-|...=++.++.+++ .+++||-+- ..+|-|. .
T Consensus 209 TG~~~~ya~NiT~~~~em~~ra~~~~~~G~~~~m-------v~~~~~G~~~l~~l~~~~~~~~l~ih~Hra~~ga~~--~ 279 (412)
T TIGR03326 209 TGERKEYLANITAPVREMERRAELVADLGGQYVM-------VDVVVCGWSALQYIRELTEDLGLAIHAHRAMHAAFT--R 279 (412)
T ss_pred hCCcceEEEEecCCHHHHHHHHHHHHHhCCCeEE-------EEeeccchHHHHHHHHhhccCCeEEEEcCCcccccc--c
Confidence 155666665543 346667777777789999999 9888777999999997 457998761 1222211 0
Q ss_pred HHHHCCCCchhhHHHHHHHHHHHhcccEeehh
Q 013861 390 AGGALKMIDEQRVMMESLMCLRRAGADIILTY 421 (435)
Q Consensus 390 aAa~~G~ide~~~v~Esl~~ikRAGAd~IiTY 421 (435)
.-+.|+ +. .++ =+-+|-||||.|++-
T Consensus 280 -~~~~Gi-s~--~vl--~kl~RLaGaD~~~~~ 305 (412)
T TIGR03326 280 -NPKHGI-SM--FAL--AKLYRLIGVDQLHTG 305 (412)
T ss_pred -CCCCcC-cH--HHH--HHHHHHcCCCeeeeC
Confidence 112343 22 222 234566999999853
No 142
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=69.99 E-value=50 Score=32.04 Aligned_cols=72 Identities=19% Similarity=0.259 Sum_probs=41.0
Q ss_pred ccccccEEecccCCCcccCC----CchHHHHHHHHhh---CCCCeEEEE-echHHHHHHHHHHCCCCchhhHHHHHHHHH
Q 013861 339 ESEGADILLFSVLGSQVKPG----LPYLDVIRLLRDK---YPLPIAAYQ-VSGEYSMIKAGGALKMIDEQRVMMESLMCL 410 (435)
Q Consensus 339 ~~EGADilM~~~~~~~VKPa----l~YLDIIr~vk~~---~~lPvaaYq-VSGEYaMikaAa~~G~ide~~~v~Esl~~i 410 (435)
++-|||.|-+ ++|.+ .-|+..++.+++. +++|+.+-- .-|.. .|..+. ..+.+.....
T Consensus 100 l~~Ga~~v~~-----~~~~g~~~~~~~~~~~~~i~~~~~~~g~~liv~~~~~Gvh--------~~~~~~-~~~~~~~~~a 165 (258)
T TIGR01949 100 IRMGADAVSI-----HVNVGSDTEWEQIRDLGMIAEICDDWGVPLLAMMYPRGPH--------IDDRDP-ELVAHAARLG 165 (258)
T ss_pred HHCCCCEEEE-----EEecCCchHHHHHHHHHHHHHHHHHcCCCEEEEEeccCcc--------cccccH-HHHHHHHHHH
Confidence 3569986651 14432 2467788887763 678988611 11211 122332 2333333455
Q ss_pred HHhcccEeehhcHH
Q 013861 411 RRAGADIILTYFAL 424 (435)
Q Consensus 411 kRAGAd~IiTYfA~ 424 (435)
..+|||+|-|.|..
T Consensus 166 ~~~GADyikt~~~~ 179 (258)
T TIGR01949 166 AELGADIVKTPYTG 179 (258)
T ss_pred HHHCCCEEeccCCC
Confidence 57999999999873
No 143
>PRK08445 hypothetical protein; Provisional
Probab=69.95 E-value=13 Score=38.02 Aligned_cols=60 Identities=12% Similarity=0.226 Sum_probs=45.2
Q ss_pred CCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEe
Q 013861 147 MPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYT 217 (435)
Q Consensus 147 MPGv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~Iit 217 (435)
-++.|.++.+ ++++.++++.+.|.+.|.+-|-.++. + +-..+.+.++.||+++|++-+.+
T Consensus 67 ~~~~y~l~~e-eI~~~~~~a~~~g~~~i~~~gg~~~~---------~-~~e~~~~l~~~Ik~~~p~i~~~a 126 (348)
T PRK08445 67 EDDAYILSFE-EIDKKIEELLAIGGTQILFQGGVHPK---------L-KIEWYENLVSHIAQKYPTITIHG 126 (348)
T ss_pred CCCCeeCCHH-HHHHHHHHHHHcCCCEEEEecCCCCC---------C-CHHHHHHHHHHHHHHCCCcEEEE
Confidence 4577888986 69999999999999998876422221 1 11246689999999999988764
No 144
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=69.91 E-value=99 Score=29.11 Aligned_cols=184 Identities=16% Similarity=0.170 Sum_probs=96.5
Q ss_pred CCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCC
Q 013861 147 MPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSS 226 (435)
Q Consensus 147 MPGv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTs 226 (435)
.+|.. ++.+ ..++.++.+.+.|+..|-+-+-.+. .+.+ ..+ -..+.++.+++..|++.+.+.+
T Consensus 11 ~~~~~-~s~e-~~~~i~~~L~~~GV~~IEvg~~~~~-~~~p-----~~~--~~~~~i~~l~~~~~~~~~~~l~------- 73 (265)
T cd03174 11 SEGAT-FSTE-DKLEIAEALDEAGVDSIEVGSGASP-KAVP-----QME--DDWEVLRAIRKLVPNVKLQALV------- 73 (265)
T ss_pred CCCCC-CCHH-HHHHHHHHHHHcCCCEEEeccCcCc-cccc-----cCC--CHHHHHHHHHhccCCcEEEEEc-------
Confidence 34443 3765 5888899999999999887442221 1111 111 1356889999988766555433
Q ss_pred CCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC-------------chHHHHHH---HHHHCCCCCcee
Q 013861 227 DGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMD-------------GRVGAIRA---ALDAEGFQHVSI 290 (435)
Q Consensus 227 hGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMMD-------------GrVgAIR~---aLD~~Gf~~v~I 290 (435)
+ +| .+.+-..+++|+|.|--++-.. +.+..+.+ .+.+.|+.-..-
T Consensus 74 -------~-~~-----------~~~i~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~ 134 (265)
T cd03174 74 -------R-NR-----------EKGIERALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGS 134 (265)
T ss_pred -------c-Cc-----------hhhHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 1 11 2223334567888877665443 12222222 234455521111
Q ss_pred echhhhhcccccccchhhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHh
Q 013861 291 MSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRD 370 (435)
Q Consensus 291 MSYSaKyASafYGPFRdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~ 370 (435)
+.++ ++| ..|.++-..-++.=.+.|+|.|.+.-.-...-|. -+.++++.+++
T Consensus 135 ~~~~-------~~~--------------------~~~~~~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~-~v~~li~~l~~ 186 (265)
T cd03174 135 LEDA-------FGC--------------------KTDPEYVLEVAKALEEAGADEISLKDTVGLATPE-EVAELVKALRE 186 (265)
T ss_pred EEee-------cCC--------------------CCCHHHHHHHHHHHHHcCCCEEEechhcCCcCHH-HHHHHHHHHHH
Confidence 1111 111 2233333222222235799999843222223333 35788999999
Q ss_pred hCC-CCeEEEEechHHH----HHHHHHHCC
Q 013861 371 KYP-LPIAAYQVSGEYS----MIKAGGALK 395 (435)
Q Consensus 371 ~~~-lPvaaYqVSGEYa----MikaAa~~G 395 (435)
.++ +|+. +|.---+- -.-+|.++|
T Consensus 187 ~~~~~~~~-~H~Hn~~gla~an~laA~~aG 215 (265)
T cd03174 187 ALPDVPLG-LHTHNTLGLAVANSLAALEAG 215 (265)
T ss_pred hCCCCeEE-EEeCCCCChHHHHHHHHHHcC
Confidence 887 7776 67643333 333455555
No 145
>PRK04208 rbcL ribulose bisophosphate carboxylase; Reviewed
Probab=69.86 E-value=13 Score=40.28 Aligned_cols=135 Identities=16% Similarity=0.200 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHHHHcCCCeecC--------CCCCCchHHHHHHHHHHCCCCCceeechhhhhcccccccchhhhcCCCC
Q 013861 243 ETVHQLCKQAVSQARAGADVVSP--------SDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPR 314 (435)
Q Consensus 243 ~Tv~~Lak~Avs~A~AGADiVAP--------SDMMDGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRdA~~Sap~ 314 (435)
-|.+.+++++..++..|.|+|== -.=++-||.++.++++++. -.
T Consensus 173 Lsp~~~a~~~y~~~~GGvD~IKDDE~l~~q~f~p~~~Rv~~~~~a~~~a~----------------------------~e 224 (468)
T PRK04208 173 LSAKNYGRVVYEALRGGLDFTKDDENLNSQPFNRWRDRFLFVMEAIDKAE----------------------------AE 224 (468)
T ss_pred CCHHHHHHHHHHHHhcCCceeeCCCCCCCCCCccHHHHHHHHHHHHHHHH----------------------------Hh
Confidence 46788999999999999999731 1112234444333333321 11
Q ss_pred CCCccccCCCCCC--HHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHh---hCCCCeEEEE-echHHHHH
Q 013861 315 FGDKKTYQMNPAN--YREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRD---KYPLPIAAYQ-VSGEYSMI 388 (435)
Q Consensus 315 fgDRktYQmdp~N--~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~---~~~lPvaaYq-VSGEYaMi 388 (435)
-|.++-|-+|... ..|.++.+..=+++|++++| |-|...=++.++.+++ .+++||-+-- .+|-|.
T Consensus 225 TG~~k~y~~NiT~~~~~em~~ra~~~~e~G~~~~m-------v~~~~~G~~~l~~l~~~~~~~~l~IhaHrA~~ga~~-- 295 (468)
T PRK04208 225 TGERKGHYLNVTAPTMEEMYKRAEFAKELGSPIVM-------IDVVTAGWTALQSLREWCRDNGLALHAHRAMHAAFT-- 295 (468)
T ss_pred hCCcceEEEecCCCCHHHHHHHHHHHHHhCCCEEE-------EeccccccHHHHHHHHhhhcCCcEEEecCCcccccc--
Confidence 3677888887544 58888888888889999999 9888777999999987 5589985421 122111
Q ss_pred HHHHHCCCCchhhHHHHHHHHHHHhcccEeeh
Q 013861 389 KAGGALKMIDEQRVMMESLMCLRRAGADIILT 420 (435)
Q Consensus 389 kaAa~~G~ide~~~v~Esl~~ikRAGAd~IiT 420 (435)
..-..|+ +. .++= +-+|-||||.|++
T Consensus 296 -r~~~~Gi-s~--~vl~--Kl~RLaGaD~ih~ 321 (468)
T PRK04208 296 -RNPNHGI-SF--RVLA--KLLRLIGVDHLHT 321 (468)
T ss_pred -cCcCCCC-CH--HHHH--HHHHHcCCCcccc
Confidence 1112343 22 2232 2356699999986
No 146
>PRK09234 fbiC FO synthase; Reviewed
Probab=69.45 E-value=10 Score=43.69 Aligned_cols=59 Identities=14% Similarity=0.173 Sum_probs=45.4
Q ss_pred CCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEe
Q 013861 148 PGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYT 217 (435)
Q Consensus 148 PGv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~Iit 217 (435)
++.|+++.+ ++++.++++++.|++.|.+-|-+.++ ++ --.+.+.++.||+++|++-|.+
T Consensus 552 ~~~y~Ls~e-eI~~~a~ea~~~G~tev~i~gG~~p~---------~~-~~~y~~lir~IK~~~p~i~i~a 610 (843)
T PRK09234 552 ADAYTLSLD-EVADRAWEAWVAGATEVCMQGGIHPE---------LP-GTGYADLVRAVKARVPSMHVHA 610 (843)
T ss_pred CCcccCCHH-HHHHHHHHHHHCCCCEEEEecCCCCC---------cC-HHHHHHHHHHHHHhCCCeeEEe
Confidence 468899986 69999999999999999886543221 11 1256689999999999988754
No 147
>PF00016 RuBisCO_large: Ribulose bisphosphate carboxylase large chain, catalytic domain; InterPro: IPR000685 Ribulose bisphosphate carboxylase (RuBisCO) [, ] catalyses the initial step in Calvin's reductive pentose phosphate cycle in plants as well as purple and green bacteria. It consists of a large catalytic unit and a small subunit of undetermined function. In plants, the large subunit is coded by the chloroplastic genome while the small subunit is encoded in the nuclear genome. Molecular activation of RuBisCO by CO2 involves the formation of a carbamate with the epsilon-amino group of a conserved lysine residue. This carbamate is stabilised by a magnesium ion. One of the ligands of the magnesium ion is an aspartic acid residue close to the active site lysine [].; GO: 0000287 magnesium ion binding, 0016984 ribulose-bisphosphate carboxylase activity, 0015977 carbon fixation, 0009536 plastid; PDB: 3AXM_A 1WDD_A 3AXK_A 1SVD_A 1RXO_B 1UPP_C 1UPM_R 1RCO_L 8RUC_G 1RCX_B ....
Probab=69.07 E-value=11 Score=38.80 Aligned_cols=136 Identities=22% Similarity=0.260 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHHHcCCCeecCC--------CCCCchHHHHHHHHHHCCCCCceeechhhhhcccccccchhhhcCCCC
Q 013861 243 ETVHQLCKQAVSQARAGADVVSPS--------DMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPR 314 (435)
Q Consensus 243 ~Tv~~Lak~Avs~A~AGADiVAPS--------DMMDGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRdA~~Sap~ 314 (435)
-|.+.+++++-.+|..|.|+|==. .=+.=||.+..++++++. +.
T Consensus 27 lsp~~~a~~~y~~a~GG~D~IKDDE~l~~q~f~p~~eRv~~~~~a~~~a~-------------------------~e--- 78 (309)
T PF00016_consen 27 LSPEELAELAYEFALGGVDFIKDDENLANQPFCPFEERVPACMEAVDRAE-------------------------EE--- 78 (309)
T ss_dssp S-HHHHHHHHHHHHHTTSSEEEE-TT-SSBTTBEHHHHHHHHHHHHHHHH-------------------------HH---
T ss_pred ecccchhhHHHhhhhcccceecccccccCcccccHhHhHHhhhhhhhccc-------------------------cc---
Confidence 478899999999999999998421 112345555544444331 11
Q ss_pred CCCccccCCCCC--CHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHh---hCCCCeEEEEechHHHHHH
Q 013861 315 FGDKKTYQMNPA--NYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRD---KYPLPIAAYQVSGEYSMIK 389 (435)
Q Consensus 315 fgDRktYQmdp~--N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~---~~~lPvaaYqVSGEYaMik 389 (435)
-|-|+-|-.|.- ...|.++.++.=.+.|++.|| |-+...=++.++.+++ ...+|+- +|-.|-=++..
T Consensus 79 TG~~~ly~~NiT~~~~~em~~ra~~a~~~G~~~vm-------v~~~~~G~~~~~~l~~~~~~~~~~ih-~H~A~~ga~~r 150 (309)
T PF00016_consen 79 TGEKKLYAANITADTPDEMIERAEYAKEAGANAVM-------VNVLTAGFSALQSLAEDARDNGLPIH-AHRAGHGAFTR 150 (309)
T ss_dssp HSS--EEEEEE-SSSHHHHHHHHHHHHHHTGSEEE-------EEHHHHCHHHHHHHHHHHHHHTSEEE-EETTTHHHHHS
T ss_pred cceecceecccccccHHHHHHhhhhhhhhccchhh-------cccccccccccchhhhhhcccceeee-eccccchhhcc
Confidence 267888888864 358999999999999999999 7654332555555543 3346663 35433222221
Q ss_pred HHHHCCCCchhhHHHHHHHHHHHhcccEeeh
Q 013861 390 AGGALKMIDEQRVMMESLMCLRRAGADIILT 420 (435)
Q Consensus 390 aAa~~G~ide~~~v~Esl~~ikRAGAd~IiT 420 (435)
.-..|+ +. .++= +-+|=||||.|++
T Consensus 151 -~~~~Gi-s~--~vl~--kl~RLaGaD~vh~ 175 (309)
T PF00016_consen 151 -SPDHGI-SF--RVLG--KLMRLAGADHVHF 175 (309)
T ss_dssp -SSSSEE-HH--HHHH--HHHHHHT-SEEEE
T ss_pred -cccCcc-ce--eeec--cceecceeeeecc
Confidence 122444 32 2343 3346699999983
No 148
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=68.63 E-value=4 Score=40.16 Aligned_cols=149 Identities=19% Similarity=0.250 Sum_probs=95.1
Q ss_pred CCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchH
Q 013861 194 NDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRV 273 (435)
Q Consensus 194 ~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTshGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMMDGrV 273 (435)
...|. ++|+.||+.|||-.|++|.-.+ | .|.+ .++|| ++||||++.=|.+.| +
T Consensus 40 k~eG~--~aV~~lr~~~pd~~IvAD~Kt~-----------D-~G~~--------e~~ma---~~aGAd~~tV~g~A~--~ 92 (217)
T COG0269 40 KAEGM--RAVRALRELFPDKIIVADLKTA-----------D-AGAI--------EARMA---FEAGADWVTVLGAAD--D 92 (217)
T ss_pred HHhhH--HHHHHHHHHCCCCeEEeeeeec-----------c-hhHH--------HHHHH---HHcCCCEEEEEecCC--H
Confidence 33466 8999999999999999997532 2 3433 34444 789999999999987 5
Q ss_pred HHHHHHHHHCCCCCceeechhhhhcccccccchhhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCC
Q 013861 274 GAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGS 353 (435)
Q Consensus 274 gAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~ 353 (435)
..|++++.++-=.+ +-+|. | -|+..|..++.++... -|.|++.+..--.
T Consensus 93 ~TI~~~i~~A~~~~--~~v~i----------------------D----l~~~~~~~~~~~~l~~---~gvd~~~~H~g~D 141 (217)
T COG0269 93 ATIKKAIKVAKEYG--KEVQI----------------------D----LIGVWDPEQRAKWLKE---LGVDQVILHRGRD 141 (217)
T ss_pred HHHHHHHHHHHHcC--CeEEE----------------------E----eecCCCHHHHHHHHHH---hCCCEEEEEeccc
Confidence 66666665542111 11110 0 1233455666666553 7999998443222
Q ss_pred cccCCCch-HHHHHHHHhhCC--CCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEeeh
Q 013861 354 QVKPGLPY-LDVIRLLRDKYP--LPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILT 420 (435)
Q Consensus 354 ~VKPal~Y-LDIIr~vk~~~~--lPvaaYqVSGEYaMikaAa~~G~ide~~~v~Esl~~ikRAGAd~IiT 420 (435)
+-.=+... +|.+..+|+.++ ++|+. +|-|+.+ .+..|+-.|+|++|-
T Consensus 142 ~q~~G~~~~~~~l~~ik~~~~~g~~vAV---------------aGGI~~~-----~i~~~~~~~~~ivIv 191 (217)
T COG0269 142 AQAAGKSWGEDDLEKIKKLSDLGAKVAV---------------AGGITPE-----DIPLFKGIGADIVIV 191 (217)
T ss_pred HhhcCCCccHHHHHHHHHhhccCceEEE---------------ecCCCHH-----HHHHHhcCCCCEEEE
Confidence 22233334 788888888775 56654 6777764 456677889999884
No 149
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=68.62 E-value=11 Score=35.58 Aligned_cols=91 Identities=26% Similarity=0.375 Sum_probs=60.2
Q ss_pred CCCHHHHHHHHHhcccccccEEecccCCCcccCCCc-------hHHHHHHHHhhCCCCeE-EEEec---h--------HH
Q 013861 325 PANYREALVEAQADESEGADILLFSVLGSQVKPGLP-------YLDVIRLLRDKYPLPIA-AYQVS---G--------EY 385 (435)
Q Consensus 325 p~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~-------YLDIIr~vk~~~~lPva-aYqVS---G--------EY 385 (435)
..+.+|.+.+++.=..+|||+|= +.=-+. -.+.++.+++.+++|+. .|.-. | -+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~D~vE-------lRlD~l~~~~~~~~~~~l~~lr~~~~~piI~T~R~~~eGG~~~~~~~~~~ 78 (224)
T PF01487_consen 6 GSTLEELLAELEEAESSGADAVE-------LRLDYLENDSAEDISEQLAELRRSLDLPIIFTVRTKEEGGRFQGSEEEYL 78 (224)
T ss_dssp -SSHHHHHHHHHHHHHTTTSEEE-------EEGGGSTTTSHHHHHHHHHHHHHHCTSEEEEE--BGGGTSSBSS-HHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCCEEE-------EEeccccccChHHHHHHHHHHHHhCCCCEEEEecccccCCCCcCCHHHHH
Confidence 34666766666554445999996 443322 25678888888899975 44432 2 34
Q ss_pred HHHHHHHHCC--CCchhhH-HHH---HHHHHHHhcccEeehhc
Q 013861 386 SMIKAGGALK--MIDEQRV-MME---SLMCLRRAGADIILTYF 422 (435)
Q Consensus 386 aMikaAa~~G--~ide~~~-v~E---sl~~ikRAGAd~IiTYf 422 (435)
.+++.+++.| |+|-+-- .-| .....++.|..+|++|+
T Consensus 79 ~ll~~~~~~~~d~iDiE~~~~~~~~~~~~~~~~~~~~iI~S~H 121 (224)
T PF01487_consen 79 ELLERAIRLGPDYIDIELDLFPDDLKSRLAARKGGTKIILSYH 121 (224)
T ss_dssp HHHHHHHHHTSSEEEEEGGCCHHHHHHHHHHHHTTSEEEEEEE
T ss_pred HHHHHHHHcCCCEEEEEcccchhHHHHHHHHhhCCCeEEEEec
Confidence 7889999987 6665533 222 26678889999999999
No 150
>PF12010 DUF3502: Domain of unknown function (DUF3502); InterPro: IPR022627 This domain is about 140 amino acids in length and is functionally uncharacterised. It is found in bacteria C-terminal to PF01547 from PFAM.
Probab=68.26 E-value=8 Score=34.49 Aligned_cols=45 Identities=20% Similarity=0.201 Sum_probs=40.9
Q ss_pred HHHHCCCCchhhHHHHHHHHHHHhcccEeehhcHHHHHHHHhccC
Q 013861 390 AGGALKMIDEQRVMMESLMCLRRAGADIILTYFALQAARCLCGEK 434 (435)
Q Consensus 390 aAa~~G~ide~~~v~Esl~~ikRAGAd~IiTYfA~~~a~~L~~~~ 434 (435)
.+...|.+|.+..+-|.+..++-||-|=|+.=.-+|+-.||..+|
T Consensus 90 ~~L~~G~vd~e~~~~~~~~kLk~AGidkV~~E~QkQlda~~~~~k 134 (134)
T PF12010_consen 90 PPLETGLVDPEEALPEFNEKLKAAGIDKVIAELQKQLDAFLAANK 134 (134)
T ss_pred HHHHccCCCHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhcC
Confidence 367799999999999999999999999999999999999997654
No 151
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=67.92 E-value=39 Score=32.29 Aligned_cols=62 Identities=23% Similarity=0.279 Sum_probs=41.3
Q ss_pred hhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCC-eEEE-----eeecccCCCCCCcc
Q 013861 157 HGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPD-LVIY-----TDVALDPYSSDGHD 230 (435)
Q Consensus 157 ~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pd-l~Ii-----tDVcLc~YTshGHc 230 (435)
+.+.+.++.+++-||+.+=+ . .|++.+ .++|+.|+++||+ +.|- +.=-++..-..|=+
T Consensus 22 ~~~~~~~~a~~~gGi~~iEv----t--~~~~~~----------~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~~aGA~ 85 (206)
T PRK09140 22 DEALAHVGALIEAGFRAIEI----P--LNSPDP----------FDSIAALVKALGDRALIGAGTVLSPEQVDRLADAGGR 85 (206)
T ss_pred HHHHHHHHHHHHCCCCEEEE----e--CCCccH----------HHHHHHHHHHcCCCcEEeEEecCCHHHHHHHHHcCCC
Confidence 35899999999999997665 1 344422 2399999999995 5532 22223444466777
Q ss_pred eeec
Q 013861 231 GIVR 234 (435)
Q Consensus 231 GIv~ 234 (435)
+++.
T Consensus 86 fivs 89 (206)
T PRK09140 86 LIVT 89 (206)
T ss_pred EEEC
Confidence 7774
No 152
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=67.88 E-value=98 Score=28.85 Aligned_cols=62 Identities=23% Similarity=0.261 Sum_probs=37.2
Q ss_pred cccccEEecccCC--CcccCC-CchHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhccc
Q 013861 340 SEGADILLFSVLG--SQVKPG-LPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGAD 416 (435)
Q Consensus 340 ~EGADilM~~~~~--~~VKPa-l~YLDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G~ide~~~v~Esl~~ikRAGAd 416 (435)
+.|||++.+...+ ....+. ..=++.|+++++.+++|+.+ .|-+...+-+.|.+ .+|||
T Consensus 120 ~~gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~~~~Pvi~---------------~GGI~~~~~v~~~l----~~Gad 180 (236)
T cd04730 120 AAGADALVAQGAEAGGHRGTFDIGTFALVPEVRDAVDIPVIA---------------AGGIADGRGIAAAL----ALGAD 180 (236)
T ss_pred HcCCCEEEEeCcCCCCCCCccccCHHHHHHHHHHHhCCCEEE---------------ECCCCCHHHHHHHH----HcCCc
Confidence 3699998852221 111111 12378999999989999986 34455433334443 48999
Q ss_pred Eeeh
Q 013861 417 IILT 420 (435)
Q Consensus 417 ~IiT 420 (435)
.|+.
T Consensus 181 gV~v 184 (236)
T cd04730 181 GVQM 184 (236)
T ss_pred EEEE
Confidence 8763
No 153
>cd08208 RLP_Photo Ribulose bisphosphate carboxylase like proteins from phototrophic bacteria. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.
Probab=67.87 E-value=14 Score=39.61 Aligned_cols=135 Identities=20% Similarity=0.241 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCCCceeechhhhhcccccccchh-------hhcCCC-C
Q 013861 243 ETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFRE-------ALDSNP-R 314 (435)
Q Consensus 243 ~Tv~~Lak~Avs~A~AGADiVAPSDMMDGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRd-------A~~Sap-~ 314 (435)
-|-+.+++++..++..|.|+|= |.+++.+- =|-||+| |++.+- .
T Consensus 173 Lsp~~~a~~~y~~~~GGvD~IK----------------DDE~l~~q------------~f~p~~eRv~~~~~ai~~a~~e 224 (424)
T cd08208 173 LPPGEFAELGYQSWLGGLDIAK----------------DDEMLADV------------DWCPLEERAALLGKARRRAEAE 224 (424)
T ss_pred CCHHHHHHHHHHHHcCCccccc----------------ccccccCC------------CCCCHHHHHHHHHHHHHHHHHh
Confidence 4667889999999999999862 33333222 2333332 121111 1
Q ss_pred CCCccccCCCCCC-HHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhCCCCeEEE-EechHHHHHHHHH
Q 013861 315 FGDKKTYQMNPAN-YREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAAY-QVSGEYSMIKAGG 392 (435)
Q Consensus 315 fgDRktYQmdp~N-~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~~lPvaaY-qVSGEYaMikaAa 392 (435)
-|.++-|-+|... .+|.++.++.=.+.|++++| |-|...=++.++.+++.+++|+.+- ..+|-|. -.-
T Consensus 225 TG~~~~ya~NiT~~~~em~~ra~~a~~~G~~~vm-------v~~~~~G~~al~~L~~~~~l~ihaHra~~ga~~---r~~ 294 (424)
T cd08208 225 TGVPKIYLANITDEVDRLMELHDVAVRNGANALL-------INAMPVGLSAVRMLRKHAQVPLIAHFPFIASFS---RLE 294 (424)
T ss_pred hCCcceEEEEccCCHHHHHHHHHHHHHhCCCEEE-------EeeecccHHHHHHHHhcCCCeEEeccCcccccc---CCC
Confidence 2678888777644 45777777777889999999 8888776999999999889998532 1222111 011
Q ss_pred HCCCCchhhHHHHHHHHHHHhcccEeeh
Q 013861 393 ALKMIDEQRVMMESLMCLRRAGADIILT 420 (435)
Q Consensus 393 ~~G~ide~~~v~Esl~~ikRAGAd~IiT 420 (435)
..|+ +. .+ .=+-+|=+|||.|+.
T Consensus 295 ~~Gi-s~--~v--l~Kl~RLaGaD~ih~ 317 (424)
T cd08208 295 KYGI-HS--RV--MTKLQRLAGLDVVIM 317 (424)
T ss_pred CCCC-cH--HH--HHHHHHHcCCCeeec
Confidence 2343 22 22 233456699999985
No 154
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=67.84 E-value=25 Score=32.00 Aligned_cols=61 Identities=26% Similarity=0.328 Sum_probs=43.0
Q ss_pred cccccEEecccC-CCcccCCCc---hHHHHHHHHhhC-CCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhc
Q 013861 340 SEGADILLFSVL-GSQVKPGLP---YLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAG 414 (435)
Q Consensus 340 ~EGADilM~~~~-~~~VKPal~---YLDIIr~vk~~~-~lPvaaYqVSGEYaMikaAa~~G~ide~~~v~Esl~~ikRAG 414 (435)
+.|+|+++|+-+ -+.-||+.. =++.++.+++.+ ++||.| .|-+++ |.+..++.+|
T Consensus 114 ~~g~dyi~~~~v~~t~~k~~~~~~~g~~~l~~~~~~~~~~pv~a---------------~GGI~~-----~~~~~~~~~G 173 (196)
T TIGR00693 114 AEGADYIGFGPIFPTPTKKDPAPPAGVELLREIAATSIDIPIVA---------------IGGITL-----ENAAEVLAAG 173 (196)
T ss_pred HcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEE---------------ECCcCH-----HHHHHHHHcC
Confidence 479999997653 445676632 378899998876 489876 355664 4566677889
Q ss_pred ccEeeh
Q 013861 415 ADIILT 420 (435)
Q Consensus 415 Ad~IiT 420 (435)
||.|..
T Consensus 174 ~~gva~ 179 (196)
T TIGR00693 174 ADGVAV 179 (196)
T ss_pred CCEEEE
Confidence 998763
No 155
>PRK12656 fructose-6-phosphate aldolase; Reviewed
Probab=67.76 E-value=7.4 Score=38.06 Aligned_cols=51 Identities=25% Similarity=0.390 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHcCCCeecCC-----CC-CCc--hHHHHHHHHHHCCCCCceeechh
Q 013861 243 ETVHQLCKQAVSQARAGADVVSPS-----DM-MDG--RVGAIRAALDAEGFQHVSIMSYT 294 (435)
Q Consensus 243 ~Tv~~Lak~Avs~A~AGADiVAPS-----DM-MDG--rVgAIR~aLD~~Gf~~v~IMSYS 294 (435)
.|+=.-..||+.-|+|||+.|||= |+ .|| .|..|++.++..|+ ++-||+=|
T Consensus 110 ~T~ifs~~Qa~~Aa~aGa~yvsPyvgRi~d~g~D~~~~i~~i~~~~~~~~~-~tkILaAS 168 (222)
T PRK12656 110 ATAIYTVFQGLLAIEAGADYLAPYYNRMENLNIDSNAVIGQLAEAIDRENS-DSKILAAS 168 (222)
T ss_pred EeeeCCHHHHHHHHHCCCCEEecccchhhhcCCCHHHHHHHHHHHHHhcCC-CCEEEEEe
Confidence 444445679999999999999992 22 233 47788889988886 57777543
No 156
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=67.73 E-value=19 Score=39.09 Aligned_cols=67 Identities=25% Similarity=0.276 Sum_probs=45.9
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEe-eecccCCCCCCcceeecCC
Q 013861 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYT-DVALDPYSSDGHDGIVRED 236 (435)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~Iit-DVcLc~YTshGHcGIv~e~ 236 (435)
+..+.++++++.|+.-|.+=. + ...+--+...|+.||+.||++.||+ ||+-
T Consensus 248 ~~~~r~~~l~~ag~d~i~iD~--~-----------~g~~~~~~~~i~~ik~~~p~~~vi~g~v~t--------------- 299 (505)
T PLN02274 248 SDKERLEHLVKAGVDVVVLDS--S-----------QGDSIYQLEMIKYIKKTYPELDVIGGNVVT--------------- 299 (505)
T ss_pred cHHHHHHHHHHcCCCEEEEeC--C-----------CCCcHHHHHHHHHHHHhCCCCcEEEecCCC---------------
Confidence 467999999999998877611 1 1122234478999999999887764 5531
Q ss_pred CccccHHHHHHHHHHHHHHHHcCCCeec
Q 013861 237 GVIMNDETVHQLCKQAVSQARAGADVVS 264 (435)
Q Consensus 237 g~IdND~Tv~~Lak~Avs~A~AGADiVA 264 (435)
.+.|....++|||+|.
T Consensus 300 ------------~e~a~~a~~aGaD~i~ 315 (505)
T PLN02274 300 ------------MYQAQNLIQAGVDGLR 315 (505)
T ss_pred ------------HHHHHHHHHcCcCEEE
Confidence 1336667778888883
No 157
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=67.69 E-value=30 Score=34.55 Aligned_cols=88 Identities=19% Similarity=0.197 Sum_probs=57.2
Q ss_pred cccCCCCCCHHHHHHHHHhcccccccEEecccCCCcc-----cCCCch--------HHHHHHHHhhCCCCeEEEEechHH
Q 013861 319 KTYQMNPANYREALVEAQADESEGADILLFSVLGSQV-----KPGLPY--------LDVIRLLRDKYPLPIAAYQVSGEY 385 (435)
Q Consensus 319 ktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~V-----KPal~Y--------LDIIr~vk~~~~lPvaaYqVSGEY 385 (435)
-.-|+--.|.++..+.+.+=.+-|+|.|=+ -+|+-. +=+..+ .+|++.+|+.+++||.+.-=
T Consensus 65 ~i~ql~g~~~~~~~~aa~~~~~~G~d~Iel-N~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir---- 139 (319)
T TIGR00737 65 ISVQLFGSDPDTMAEAAKINEELGADIIDI-NMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVDIPVTVKIR---- 139 (319)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhCCCCEEEE-ECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcCCCEEEEEE----
Confidence 347888777777666655544569998832 124321 122333 58999999999999987732
Q ss_pred HHHHHHHHCCCCchhhHHHHHHHHHHHhcccEee
Q 013861 386 SMIKAGGALKMIDEQRVMMESLMCLRRAGADIIL 419 (435)
Q Consensus 386 aMikaAa~~G~ide~~~v~Esl~~ikRAGAd~Ii 419 (435)
.||-+...-..|....+..+|+|.|.
T Consensus 140 --------~g~~~~~~~~~~~a~~l~~~G~d~i~ 165 (319)
T TIGR00737 140 --------IGWDDAHINAVEAARIAEDAGAQAVT 165 (319)
T ss_pred --------cccCCCcchHHHHHHHHHHhCCCEEE
Confidence 24543333356777778889999884
No 158
>PLN02428 lipoic acid synthase
Probab=67.68 E-value=1.4e+02 Score=31.40 Aligned_cols=226 Identities=19% Similarity=0.259 Sum_probs=129.6
Q ss_pred CChHHHhhhhcCCCCCC------------------CceeeEEEeeCCC---C---cccCCCCCceeechhhhHHHHHHHH
Q 013861 111 KSPAMRASFQETNLSPA------------------NFVYPLFIHEGEE---D---TPIGAMPGCYRLGWRHGLVQEVAKA 166 (435)
Q Consensus 111 ~~~~~R~l~~Et~L~~~------------------~LI~PlFV~eg~~---~---~~I~sMPGv~r~s~~~~l~~~v~~~ 166 (435)
....+|+++++..|+.- ...---|+.=|.. . =.++...|-++...+ ++.+.++.+
T Consensus 64 ~~~~~~~~~~~~~l~tvc~~a~cpn~~ec~~~~~~~~~taT~milg~gCtr~CrFCav~~~~~p~~~d~~-Ep~~vA~~v 142 (349)
T PLN02428 64 KYTEIKEKLRELKLNTVCEEAQCPNIGECWNGGGTGTATATIMILGDTCTRGCRFCAVKTSRTPPPPDPD-EPENVAEAI 142 (349)
T ss_pred hHHHHHHHHHHCCCceeecCCCCCChHHhhCCCCCCCceEEEEEecCCCCCCCCCCcCCCCCCCCCCChh-hHHHHHHHH
Confidence 34567888888877641 1223344333331 1 134444544566654 577888889
Q ss_pred HHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCccccHHHHH
Q 013861 167 RDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVH 246 (435)
Q Consensus 167 ~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTshGHcGIv~e~g~IdND~Tv~ 246 (435)
.+.|++.|+|-+.--+.+.|. .-.-+.+.|+.||+..|++.|-+ |.| +. +-+++.|+
T Consensus 143 ~~~Glk~vvltSg~rddl~D~-------ga~~~~elir~Ir~~~P~i~Ie~---L~p------------df-~~d~elL~ 199 (349)
T PLN02428 143 ASWGVDYVVLTSVDRDDLPDG-------GSGHFAETVRRLKQLKPEILVEA---LVP------------DF-RGDLGAVE 199 (349)
T ss_pred HHcCCCEEEEEEcCCCCCCcc-------cHHHHHHHHHHHHHhCCCcEEEE---eCc------------cc-cCCHHHHH
Confidence 999999998877522222221 11246689999999999764432 222 11 11255554
Q ss_pred HHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCCCceeechhhhhcccccccchhhhcCCCCCCCccccCCCCC
Q 013861 247 QLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPA 326 (435)
Q Consensus 247 ~Lak~Avs~A~AGADiVAPSDMMDGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRdA~~Sap~fgDRktYQmdp~ 326 (435)
. .++||.|++.=. ++ .+..++..+...++ +|.- ...-++.|..-.|.+.-+.+.-+-.+
T Consensus 200 ~-------L~eAG~d~i~hn--lE-Tv~rL~~~Ir~~~~------sye~-----~Le~L~~ak~~~pGi~tkSg~MvGLG 258 (349)
T PLN02428 200 T-------VATSGLDVFAHN--IE-TVERLQRIVRDPRA------GYKQ-----SLDVLKHAKESKPGLLTKTSIMLGLG 258 (349)
T ss_pred H-------HHHcCCCEEccC--cc-CcHHHHHHhcCCCC------CHHH-----HHHHHHHHHHhCCCCeEEEeEEEecC
Confidence 4 457899998744 55 35556666542221 1111 11122222222344433444444446
Q ss_pred CHHHHHHHHHhccc-ccccEEecccCCCcccCCCchHHHHHHHHhhCCCCeEEEEechHHHHHHHHH-HCCC
Q 013861 327 NYREALVEAQADES-EGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGG-ALKM 396 (435)
Q Consensus 327 N~~EAlre~~~D~~-EGADilM~~~~~~~VKPal~YLDIIr~vk~~~~lPvaaYqVSGEYaMikaAa-~~G~ 396 (435)
-..|=+.+...|+. -|.|++- +|..+.|. +..+||.-|--=-||.+.+.-+ +.|.
T Consensus 259 ET~Edv~e~l~~Lrelgvd~vt---igqyL~Ps------------~~h~~v~~~v~p~~f~~~~~~~~~~gf 315 (349)
T PLN02428 259 ETDEEVVQTMEDLRAAGVDVVT---FGQYLRPT------------KRHLPVKEYVTPEKFEFWREYGEEMGF 315 (349)
T ss_pred CCHHHHHHHHHHHHHcCCCEEe---eccccCCC------------cceeeeecccCHHHHHHHHHHHHHcCC
Confidence 67777888888876 6899987 44444443 4568999998888999888743 4443
No 159
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=67.58 E-value=58 Score=35.23 Aligned_cols=68 Identities=26% Similarity=0.353 Sum_probs=46.2
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCC
Q 013861 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDG 237 (435)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTshGHcGIv~e~g 237 (435)
+..+.++.+++.|+.-|.+=. . .|... .+...|+.||+.||++.|++ |
T Consensus 241 ~~~~~~~~l~~ag~d~i~id~----a----~G~s~-----~~~~~i~~ik~~~~~~~v~a-------------------G 288 (495)
T PTZ00314 241 EDIERAAALIEAGVDVLVVDS----S----QGNSI-----YQIDMIKKLKSNYPHVDIIA-------------------G 288 (495)
T ss_pred HHHHHHHHHHHCCCCEEEEec----C----CCCch-----HHHHHHHHHHhhCCCceEEE-------------------C
Confidence 358999999999999877621 1 12111 23568999999999988887 2
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCeec
Q 013861 238 VIMNDETVHQLCKQAVSQARAGADVVS 264 (435)
Q Consensus 238 ~IdND~Tv~~Lak~Avs~A~AGADiVA 264 (435)
.|.+ .++|....+||||.|-
T Consensus 289 ~V~t-------~~~a~~~~~aGad~I~ 308 (495)
T PTZ00314 289 NVVT-------ADQAKNLIDAGADGLR 308 (495)
T ss_pred CcCC-------HHHHHHHHHcCCCEEE
Confidence 2222 2345556689999984
No 160
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=67.40 E-value=1.3e+02 Score=29.29 Aligned_cols=162 Identities=19% Similarity=0.260 Sum_probs=87.7
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCC--------C----CHHHHHHHHHHH--CCCeEEEeeecccC
Q 013861 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDN--------G----LVPRTIWLLKDR--YPDLVIYTDVALDP 223 (435)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~--------g----~v~raIr~iK~~--~Pdl~IitDVcLc~ 223 (435)
.+.++++.+.+.|+..+=| | ||- .|+..+-.+-++ | ....-++.+|+. .| +.+++-. .|
T Consensus 15 ~~~~~~~~l~~~Gad~iel-~-iPf--sdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~p-v~lm~y~--n~ 87 (242)
T cd04724 15 TTLEILKALVEAGADIIEL-G-IPF--SDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKNTIP-IVLMGYY--NP 87 (242)
T ss_pred HHHHHHHHHHHCCCCEEEE-C-CCC--CCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCC-EEEEEec--CH
Confidence 4788899999999998877 6 453 555444332221 1 223355556553 34 3333111 11
Q ss_pred CCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCCCceeechhhhhcccccc
Q 013861 224 YSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYG 303 (435)
Q Consensus 224 YTshGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMMDGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYG 303 (435)
+-.. | +-+..-..+++|+|.|.--|.---....+++.+.++|..-+.+++
T Consensus 88 ~~~~---------G----------~~~fi~~~~~aG~~giiipDl~~ee~~~~~~~~~~~g~~~i~~i~----------- 137 (242)
T cd04724 88 ILQY---------G----------LERFLRDAKEAGVDGLIIPDLPPEEAEEFREAAKEYGLDLIFLVA----------- 137 (242)
T ss_pred HHHh---------C----------HHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeC-----------
Confidence 1000 1 122333467889995544343323777788888888876666555
Q ss_pred cchhhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEec--ccCCCcccCCCchHHHHHHHHhhCCCCeEE
Q 013861 304 PFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLF--SVLGSQVKPGLPYLDVIRLLRDKYPLPIAA 378 (435)
Q Consensus 304 PFRdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~--~~~~~~VKPal~YLDIIr~vk~~~~lPvaa 378 (435)
|.-..|-++.+. +...|-..+|- .+.|.|..-...-+|.|+++|+..++||.+
T Consensus 138 ---------------------P~T~~~~i~~i~-~~~~~~vy~~s~~g~tG~~~~~~~~~~~~i~~lr~~~~~pI~v 192 (242)
T cd04724 138 ---------------------PTTPDERIKKIA-ELASGFIYYVSRTGVTGARTELPDDLKELIKRIRKYTDLPIAV 192 (242)
T ss_pred ---------------------CCCCHHHHHHHH-hhCCCCEEEEeCCCCCCCccCCChhHHHHHHHHHhcCCCcEEE
Confidence 322233333332 22344445551 134555422234568899999888888865
No 161
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=66.96 E-value=99 Score=30.52 Aligned_cols=123 Identities=19% Similarity=0.230 Sum_probs=75.8
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccC---CCCCCcceeec
Q 013861 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDP---YSSDGHDGIVR 234 (435)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~---YTshGHcGIv~ 234 (435)
.+.+.++++.+.|.-.|-|=+ . . -....|+.+++.. +.|++=+-+-| -|..|+-+..+
T Consensus 90 ~~~~~~~~l~~aGa~gv~iED----~------~-------~~~~~i~ai~~a~--i~ViaRtd~~pq~~~~~gg~~~~~~ 150 (240)
T cd06556 90 AAFELAKTFMRAGAAGVKIEG----G------E-------WHIETLQMLTAAA--VPVIAHTGLTPQSVNTSGGDEGQYR 150 (240)
T ss_pred HHHHHHHHHHHcCCcEEEEcC----c------H-------HHHHHHHHHHHcC--CeEEEEeCCchhhhhccCCceeecc
Confidence 588999999999999988722 1 0 1334677777764 55665443322 23344433332
Q ss_pred CCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCCCceeech-hhhhcccccccchhhhcC
Q 013861 235 EDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSY-TAKYASSFYGPFREALDS 311 (435)
Q Consensus 235 e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMMDGrVgAIR~aLD~~Gf~~v~IMSY-SaKyASafYGPFRdA~~S 311 (435)
..+.++.+.+.|..+++||||+|-+..+ | ...+++.-++ -+++++.. +.+++.-=+=.+.|.++-
T Consensus 151 ------~~~~~~~ai~Ra~ay~~AGAd~i~~e~~-~--~e~~~~i~~~---~~~P~~~~gag~~~dgq~lv~~d~lg~ 216 (240)
T cd06556 151 ------GDEAGEQLIADALAYAPAGADLIVMECV-P--VELAKQITEA---LAIPLAGIGAGSGTDGQFLVLADAFGI 216 (240)
T ss_pred ------CHHHHHHHHHHHHHHHHcCCCEEEEcCC-C--HHHHHHHHHh---CCCCEEEEecCcCCCceEEeHHhhhcc
Confidence 2456788888999999999999998854 4 4445554443 35666654 233333333344566555
No 162
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=66.54 E-value=17 Score=35.05 Aligned_cols=52 Identities=33% Similarity=0.534 Sum_probs=39.8
Q ss_pred CcccCCCCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEE
Q 013861 141 DTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVI 215 (435)
Q Consensus 141 ~~~I~sMPGv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~I 215 (435)
...|..+||++ -..|+..+++.|..-|.+||. + .-| ...|+.+|..||++-+
T Consensus 107 ~~~i~~iPG~~-------T~~E~~~A~~~Gad~vklFPa-~-------------~~G--~~~ik~l~~~~p~ip~ 158 (213)
T PRK06552 107 LYQIPYLPGCM-------TVTEIVTALEAGSEIVKLFPG-S-------------TLG--PSFIKAIKGPLPQVNV 158 (213)
T ss_pred HcCCCEECCcC-------CHHHHHHHHHcCCCEEEECCc-c-------------cCC--HHHHHHHhhhCCCCEE
Confidence 35889999993 257788899999999999983 1 124 4569999999997543
No 163
>cd08206 RuBisCO_large_I_II_III Ribulose bisphosphate carboxylase large chain, Form I,II,III. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubico-like proteins (RLP), are missing critical active site residues.
Probab=66.52 E-value=11 Score=40.08 Aligned_cols=135 Identities=19% Similarity=0.179 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCCCceeechhhhhcccccccchhh-------hcCCC-C
Q 013861 243 ETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREA-------LDSNP-R 314 (435)
Q Consensus 243 ~Tv~~Lak~Avs~A~AGADiVAPSDMMDGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRdA-------~~Sap-~ 314 (435)
-|-+.+++++..++..|.|+|= |.+++.| -=|.||++- ++.+- .
T Consensus 145 lsp~~~a~~~y~~~~GGiD~IK----------------DDE~l~~------------q~~~p~~eRv~~~~~a~~~a~~e 196 (414)
T cd08206 145 LSPKEYARVVYEALRGGLDFVK----------------DDENQNS------------QPFMRFEDRILFVAEAMDKAEAE 196 (414)
T ss_pred CCHHHHHHHHHHHHhcCCcccc----------------cCccCCC------------CCCCcHHHHHHHHHHHHHHHHHh
Confidence 4678899999999999999873 3344322 233444422 11111 1
Q ss_pred CCCccccCCCCCC--HHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhh---CCCCeEEE-EechHHHHH
Q 013861 315 FGDKKTYQMNPAN--YREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDK---YPLPIAAY-QVSGEYSMI 388 (435)
Q Consensus 315 fgDRktYQmdp~N--~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~---~~lPvaaY-qVSGEYaMi 388 (435)
-|.++-|-+|-.. .+|.++.++.=.++|++++| |-|...=++.++.+++. .++||-+- ..+|-|.
T Consensus 197 TG~~~~y~~NiT~~~~~em~~ra~~~~~~G~~~~m-------v~~~~~G~~~l~~l~~~~~~~~l~ih~HrA~~ga~~-- 267 (414)
T cd08206 197 TGEAKGHYLNITADTPEEMIKRAEFAKELGSVIVM-------VDGVTAGWTAIQSARRWCPDNGLALHAHRAGHAAFT-- 267 (414)
T ss_pred hCCcceEEeccCCCcHHHHHHHHHHHHHhCCcEEE-------EeeecccHHHHHHHHHhccccCeEEEEccccceecc--
Confidence 3788899998875 58999999888899999999 98887779999999984 46887542 1222221
Q ss_pred HHHHHCCCCchhhHHHHHHHHHHHhcccEeeh
Q 013861 389 KAGGALKMIDEQRVMMESLMCLRRAGADIILT 420 (435)
Q Consensus 389 kaAa~~G~ide~~~v~Esl~~ikRAGAd~IiT 420 (435)
. .-+.|+ +. .+ .-+-+|-||||.|++
T Consensus 268 ~-~~~~Gi-s~--~v--l~kl~RLaGaD~ih~ 293 (414)
T cd08206 268 R-QKNHGI-SM--RV--LAKLARLIGVDHIHT 293 (414)
T ss_pred c-CCCCcC-cH--HH--HHHHHHHcCCCcccc
Confidence 1 112343 22 22 233456699999986
No 164
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=66.51 E-value=11 Score=37.87 Aligned_cols=125 Identities=19% Similarity=0.163 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCCCceeechhhhhcccccccchhhhcCCCC-CCCcccc
Q 013861 243 ETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPR-FGDKKTY 321 (435)
Q Consensus 243 ~Tv~~Lak~Avs~A~AGADiVAPSDMMDGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRdA~~Sap~-fgDRktY 321 (435)
+-++.++|.|+...=+.-|=..-|||. |-+.+| -.|||=+++++..+-+ +++.+--
T Consensus 135 Pg~R~~~k~Av~~GGg~~HR~~L~d~v----------likdnH-------------i~~~g~~~~~v~~aR~~~~~~~~I 191 (277)
T PRK08072 135 PGLRMFDKYAVVCGGGFNHRFGLYDGV----------MIKDNH-------------IAFCGSITKAVTSVREKLGHMVKI 191 (277)
T ss_pred cchhHHHHHHHHhcCCcccCCCCCceE----------EEchhH-------------HHhhCCHHHHHHHHHHhCCCCCEE
Confidence 335566666666655555555566653 111111 1234445555443322 2333444
Q ss_pred CCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhh
Q 013861 322 QMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQR 401 (435)
Q Consensus 322 Qmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G~ide~~ 401 (435)
-+-..|.+|+.+.. +.|||+|| +.+ .-++-++++++..+.|+... .-|-|+.+
T Consensus 192 gvsv~tleea~~A~----~~gaDyI~-------lD~--~~~e~l~~~~~~~~~~i~i~-------------AiGGIt~~- 244 (277)
T PRK08072 192 EVETETEEQVREAV----AAGADIIM-------FDN--RTPDEIREFVKLVPSAIVTE-------------ASGGITLE- 244 (277)
T ss_pred EEEeCCHHHHHHHH----HcCCCEEE-------ECC--CCHHHHHHHHHhcCCCceEE-------------EECCCCHH-
Confidence 56667887765553 59999999 544 45688888888665443211 24667764
Q ss_pred HHHHHHHHHHHhcccEeehh
Q 013861 402 VMMESLMCLRRAGADIILTY 421 (435)
Q Consensus 402 ~v~Esl~~ikRAGAd~IiTY 421 (435)
.+..+..+|+|.|-+-
T Consensus 245 ----ni~~~a~~Gvd~IAvg 260 (277)
T PRK08072 245 ----NLPAYGGTGVDYISLG 260 (277)
T ss_pred ----HHHHHHHcCCCEEEEC
Confidence 4567788999999764
No 165
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=66.41 E-value=7.1 Score=41.01 Aligned_cols=78 Identities=21% Similarity=0.328 Sum_probs=58.4
Q ss_pred hhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHH-HHHHHHHHHCCCeEEEe--------eecccCCCCC
Q 013861 157 HGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVP-RTIWLLKDRYPDLVIYT--------DVALDPYSSD 227 (435)
Q Consensus 157 ~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~-raIr~iK~~~Pdl~Iit--------DVcLc~YTsh 227 (435)
++-++.++.+.+.|.+-+.+.|.... .|+. .-|++. .+|+.||+.+||+-||+ |++.|-= -+
T Consensus 155 ~kTvd~ak~~e~aG~~~ltVHGRtr~-~kg~-------~~~pad~~~i~~v~~~~~~ipviaNGnI~~~~d~~~~~~-~t 225 (358)
T KOG2335|consen 155 EKTVDYAKMLEDAGVSLLTVHGRTRE-QKGL-------KTGPADWEAIKAVRENVPDIPVIANGNILSLEDVERCLK-YT 225 (358)
T ss_pred HHHHHHHHHHHhCCCcEEEEecccHH-hcCC-------CCCCcCHHHHHHHHHhCcCCcEEeeCCcCcHHHHHHHHH-Hh
Confidence 35788888999999999999998543 4433 234443 79999999999987776 6666632 46
Q ss_pred CcceeecCCCccccHH
Q 013861 228 GHDGIVREDGVIMNDE 243 (435)
Q Consensus 228 GHcGIv~e~g~IdND~ 243 (435)
|=+||+--.|.+.|-.
T Consensus 226 G~dGVM~arglL~NPa 241 (358)
T KOG2335|consen 226 GADGVMSARGLLYNPA 241 (358)
T ss_pred CCceEEecchhhcCch
Confidence 8899987678887754
No 166
>PLN02877 alpha-amylase/limit dextrinase
Probab=66.35 E-value=1.1e+02 Score=36.24 Aligned_cols=155 Identities=22% Similarity=0.258 Sum_probs=89.9
Q ss_pred CCceeeEEEeeCCC-Cccc-CCCCCceeechh--hhHHHHHHHHHHcCCCeEEEeecC-----CCCC-------------
Q 013861 127 ANFVYPLFIHEGEE-DTPI-GAMPGCYRLGWR--HGLVQEVAKARDVGVNSVVLFPKV-----PDAL------------- 184 (435)
Q Consensus 127 ~~LI~PlFV~eg~~-~~~I-~sMPGv~r~s~~--~~l~~~v~~~~~~GI~sv~LFgvi-----~~~~------------- 184 (435)
+-.||=+.|.+=.. +..+ ...+|-|.==.+ ...++++++|.++||++|-|-|+- ++..
T Consensus 339 D~VIYElHVRDFS~~d~sv~~~~RGtylgftE~~s~gi~hLk~LkelGVThVeLLPvfDf~tvdE~~~~~~~~~~~~l~~ 418 (970)
T PLN02877 339 DISIYELHVRDFSANDETVHPDFRGGYLAFTSQDSAGVLHLKKLADAGLTHVHLLPTFQFGSVDDEKENWKCVDPKELEK 418 (970)
T ss_pred ccEEEEEeccccccCCCCCCcCCCCcchhhhhhhhhHHHHHHHHHHcCCCEEEeCCccccCCcccccccccccccchhcc
Confidence 45678888886552 2211 335565531110 125778999999999999997752 2100
Q ss_pred -----------------C-------------CcccCcCcCCCCCH-----HHHHHHHHHHCCCeEEEeeecccCCCCCCc
Q 013861 185 -----------------K-------------SPTGDEAYNDNGLV-----PRTIWLLKDRYPDLVIYTDVALDPYSSDGH 229 (435)
Q Consensus 185 -----------------K-------------d~~Gs~A~~~~g~v-----~raIr~iK~~~Pdl~IitDVcLc~YTshGH 229 (435)
. -+.||++-+|+|+. .+.|+.+.++ .|-||-||-.-+....|.
T Consensus 419 ~~~~s~~~q~~v~~~~~~d~yNWGYDP~~YfaPEgSYatdP~g~~RI~efk~mV~~lH~~--GI~VImDVVyNHt~~~g~ 496 (970)
T PLN02877 419 LPPDSEEQQAAITAIQDDDGYNWGYNPVLWGVPKGSYASNPDGPCRIIEFRKMVQALNRI--GLRVVLDVVYNHLHSSGP 496 (970)
T ss_pred ccccchhhhhcccccccCCCCCCCCCccccCCCCcccccCCCCcchHHHHHHHHHHHHHC--CCEEEEEECCccccCCCC
Confidence 0 15678888888863 2233333322 599999998877655454
Q ss_pred ce---ee-----------cCCCcccc------H----HHH-HHHHHHHHHHHH-cCCC---eecCCCCCCchHHHHHHHH
Q 013861 230 DG---IV-----------REDGVIMN------D----ETV-HQLCKQAVSQAR-AGAD---VVSPSDMMDGRVGAIRAAL 280 (435)
Q Consensus 230 cG---Iv-----------~e~g~IdN------D----~Tv-~~Lak~Avs~A~-AGAD---iVAPSDMMDGrVgAIR~aL 280 (435)
.+ .+ +.+|.+.| . .=+ +.+.....-.++ -|.| +=.-..+++..+..||++|
T Consensus 497 ~~~~s~ld~~vP~YY~r~~~~G~~~ns~c~n~~Ase~~mvrklIlDsl~yW~~ey~VDGFRFDlmg~i~~~tm~~~~~~L 576 (970)
T PLN02877 497 FDENSVLDKIVPGYYLRRNSDGFIENSTCVNNTASEHYMVDRLIVDDLLNWAVNYKVDGFRFDLMGHLMKRTMVRAKDAL 576 (970)
T ss_pred cchhhcccCCCCCceEEECCCCCcccCCccCCCccCCHHHHHHHHHHHHHHHHHhCCCEEEEEccccccHHHHHHHHHHH
Confidence 32 11 12343333 1 112 333444444453 5655 4456667778889999999
Q ss_pred HHC
Q 013861 281 DAE 283 (435)
Q Consensus 281 D~~ 283 (435)
++-
T Consensus 577 ~~i 579 (970)
T PLN02877 577 QSL 579 (970)
T ss_pred HHH
Confidence 885
No 167
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=66.29 E-value=21 Score=36.30 Aligned_cols=88 Identities=30% Similarity=0.401 Sum_probs=57.3
Q ss_pred ccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCC---chHHHHHHHHhhCC-CCeEEEEechHHHHHHHHHH
Q 013861 318 KKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGL---PYLDVIRLLRDKYP-LPIAAYQVSGEYSMIKAGGA 393 (435)
Q Consensus 318 RktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal---~YLDIIr~vk~~~~-lPvaaYqVSGEYaMikaAa~ 393 (435)
.+.|.|++ +|.+.++..-.+.|+.-+.+. .| ..|.+ -|+++++.+|+.++ +.+.+ ....|+..+.. .
T Consensus 74 ~~~y~l~~---eeI~~~a~~~~~~G~~~v~l~-~G--~~p~~~~~~~~e~i~~Ik~~~p~i~i~~-~~~~ei~~~~~--~ 144 (351)
T TIGR03700 74 PGAYAMSL---EEIVARVKEAYAPGATEVHIV-GG--LHPNLPFEWYLDMIRTLKEAYPDLHVKA-FTAVEIHHFSK--I 144 (351)
T ss_pred cccCCCCH---HHHHHHHHHHHHCCCcEEEEe-cC--CCCCCCHHHHHHHHHHHHHHCCCceEEe-CCHHHHHHHHH--H
Confidence 34777765 555555555456888776633 23 44543 57999999999984 76665 34556665542 3
Q ss_pred CCCCchhhHHHHHHHHHHHhcccEee
Q 013861 394 LKMIDEQRVMMESLMCLRRAGADIIL 419 (435)
Q Consensus 394 ~G~ide~~~v~Esl~~ikRAGAd~Ii 419 (435)
.|..++ |.|..+|.||.|.+.
T Consensus 145 ~g~~~~-----e~l~~LkeAGld~~~ 165 (351)
T TIGR03700 145 SGLPTE-----EVLDELKEAGLDSMP 165 (351)
T ss_pred cCCCHH-----HHHHHHHHcCCCcCC
Confidence 465543 568889999999775
No 168
>PRK12928 lipoyl synthase; Provisional
Probab=66.22 E-value=42 Score=33.79 Aligned_cols=130 Identities=22% Similarity=0.204 Sum_probs=78.2
Q ss_pred eeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcc
Q 013861 151 YRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHD 230 (435)
Q Consensus 151 ~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTshGHc 230 (435)
+.++.+ +++++++++.+.|++-|.|=|..-+++.| + ...-+...|+.||+.+|++-| ++ |.|. +.
T Consensus 85 ~~~~~e-ei~~~a~~~~~~G~keivitg~~~dDl~d--~-----g~~~~~ell~~Ik~~~p~~~I--~~-ltp~----~~ 149 (290)
T PRK12928 85 MPLDPD-EPERVAEAVAALGLRYVVLTSVARDDLPD--G-----GAAHFVATIAAIRARNPGTGI--EV-LTPD----FW 149 (290)
T ss_pred CCCCHH-HHHHHHHHHHHCCCCEEEEEEEeCCcccc--c-----CHHHHHHHHHHHHhcCCCCEE--EE-eccc----cc
Confidence 456775 59999999999999998887752111111 0 011477899999999998755 22 2221 11
Q ss_pred e----ee---cCCC-cccc------HHH---------HHHHHHHHHHHHHcCCCeecCCCCCCch------HHHHHHHHH
Q 013861 231 G----IV---REDG-VIMN------DET---------VHQLCKQAVSQARAGADVVSPSDMMDGR------VGAIRAALD 281 (435)
Q Consensus 231 G----Iv---~e~g-~IdN------D~T---------v~~Lak~Avs~A~AGADiVAPSDMMDGr------VgAIR~aLD 281 (435)
| .+ .+.| +|-| |.- .++..+.--...+.|-++..-|+||=|- +...=+.|.
T Consensus 150 ~~~~e~L~~l~~Ag~~i~~hnlEt~~~vl~~m~r~~t~e~~le~l~~ak~~gp~i~~~s~iIvG~GET~ed~~etl~~Lr 229 (290)
T PRK12928 150 GGQRERLATVLAAKPDVFNHNLETVPRLQKAVRRGADYQRSLDLLARAKELAPDIPTKSGLMLGLGETEDEVIETLRDLR 229 (290)
T ss_pred cCCHHHHHHHHHcCchhhcccCcCcHHHHHHhCCCCCHHHHHHHHHHHHHhCCCceecccEEEeCCCCHHHHHHHHHHHH
Confidence 1 00 0111 1222 222 2222222233456788899999999885 223334677
Q ss_pred HCCCCCceeechhh
Q 013861 282 AEGFQHVSIMSYTA 295 (435)
Q Consensus 282 ~~Gf~~v~IMSYSa 295 (435)
+.|+..+.|..|.-
T Consensus 230 el~~d~v~i~~Yl~ 243 (290)
T PRK12928 230 AVGCDRLTIGQYLR 243 (290)
T ss_pred hcCCCEEEEEcCCC
Confidence 78999999999976
No 169
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=66.05 E-value=60 Score=34.19 Aligned_cols=46 Identities=11% Similarity=0.177 Sum_probs=29.4
Q ss_pred HHHHHHHHHHcC--CCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEe
Q 013861 159 LVQEVAKARDVG--VNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYT 217 (435)
Q Consensus 159 l~~~v~~~~~~G--I~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~Iit 217 (435)
-.+.++.+++.| +..+.| +-+ .-..-.+...|+.||+.||++.||+
T Consensus 108 d~er~~~L~~a~~~~d~ivi----D~A---------hGhs~~~i~~ik~ir~~~p~~~via 155 (343)
T TIGR01305 108 DLEKMTSILEAVPQLKFICL----DVA---------NGYSEHFVEFVKLVREAFPEHTIMA 155 (343)
T ss_pred HHHHHHHHHhcCCCCCEEEE----ECC---------CCcHHHHHHHHHHHHhhCCCCeEEE
Confidence 467777788775 554443 111 1222346678899999999888774
No 170
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=65.82 E-value=30 Score=27.26 Aligned_cols=62 Identities=15% Similarity=0.217 Sum_probs=45.9
Q ss_pred CCCHHHHHHHHHhcccccccEEecccCCCccc---CCCchHHHHHHHHhhC-CCCeEEEEechHHHHHHHHHHCCC
Q 013861 325 PANYREALVEAQADESEGADILLFSVLGSQVK---PGLPYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKM 396 (435)
Q Consensus 325 p~N~~EAlre~~~D~~EGADilM~~~~~~~VK---Pal~YLDIIr~vk~~~-~lPvaaYqVSGEYaMikaAa~~G~ 396 (435)
..|..||+..... ...|+++ +- |...-+++++.+++.. ..|+..+--..+......+.+.|.
T Consensus 29 ~~~~~~~~~~~~~---~~~d~ii-------id~~~~~~~~~~~~~~i~~~~~~~~ii~~t~~~~~~~~~~~~~~g~ 94 (112)
T PF00072_consen 29 ASSGEEALELLKK---HPPDLII-------IDLELPDGDGLELLEQIRQINPSIPIIVVTDEDDSDEVQEALRAGA 94 (112)
T ss_dssp ESSHHHHHHHHHH---STESEEE-------EESSSSSSBHHHHHHHHHHHTTTSEEEEEESSTSHHHHHHHHHTTE
T ss_pred ECCHHHHHHHhcc---cCceEEE-------EEeeeccccccccccccccccccccEEEecCCCCHHHHHHHHHCCC
Confidence 3467777766643 4499999 55 7789999999999987 799999987666665555555554
No 171
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=65.52 E-value=15 Score=36.06 Aligned_cols=120 Identities=23% Similarity=0.345 Sum_probs=81.0
Q ss_pred HHHcCCCeecCCCCCCchHHHHHHHHHHCCCCCceeec-hhhhhcccccccch----hhhcCCCCCC---CccccCCCCC
Q 013861 255 QARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMS-YTAKYASSFYGPFR----EALDSNPRFG---DKKTYQMNPA 326 (435)
Q Consensus 255 ~A~AGADiVAPSDMMDGrVgAIR~aLD~~Gf~~v~IMS-YSaKyASafYGPFR----dA~~Sap~fg---DRktYQmdp~ 326 (435)
.+..|+.++.|+ .|+.++|.+-|.++++|.+ |..--.-.+..=|. +.+.. -.|| |.+=.+++|.
T Consensus 97 ~~~~g~p~tt~~-------~A~~~AL~alg~~RIalvTPY~~~v~~~~~~~l~~~G~eV~~~-~~~~~~~~~~ia~i~p~ 168 (239)
T TIGR02990 97 AAKPGTPVVTPS-------SAAVDGLAALGVRRISLLTPYTPETSRPMAQYFAVRGFEIVNF-TCLGLTDDREMARISPD 168 (239)
T ss_pred hcCCCCCeeCHH-------HHHHHHHHHcCCCEEEEECCCcHHHHHHHHHHHHhCCcEEeee-eccCCCCCceeeecCHH
Confidence 456789999885 7999999999999999986 43322222222122 11111 1133 3455678998
Q ss_pred CHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhCCCCeEEEEechHHHHHHHH
Q 013861 327 NYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAG 391 (435)
Q Consensus 327 N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~~lPvaaYqVSGEYaMikaA 391 (435)
...++++++. ..+||.|..| ==+|.-+|||.++.+.++.||..=+.--=+.|++.+
T Consensus 169 ~i~~~~~~~~---~~~aDAifis------CTnLrt~~vi~~lE~~lGkPVlsSNqat~W~~Lr~~ 224 (239)
T TIGR02990 169 CIVEAALAAF---DPDADALFLS------CTALRAATCAQRIEQAIGKPVVTSNQATAWRCLRLC 224 (239)
T ss_pred HHHHHHHHhc---CCCCCEEEEe------CCCchhHHHHHHHHHHHCCCEEEHHHHHHHHHHHHc
Confidence 8888888883 5789999833 335778999999999999999665554445555443
No 172
>PRK08999 hypothetical protein; Provisional
Probab=65.27 E-value=21 Score=34.96 Aligned_cols=72 Identities=26% Similarity=0.274 Sum_probs=50.7
Q ss_pred CCCCHHHHHHHHHhcccccccEEecccC-CCcccCCCch--HHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchh
Q 013861 324 NPANYREALVEAQADESEGADILLFSVL-GSQVKPGLPY--LDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQ 400 (435)
Q Consensus 324 dp~N~~EAlre~~~D~~EGADilM~~~~-~~~VKPal~Y--LDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G~ide~ 400 (435)
--.|.+|+. ++. ++|||.+.||-+ -+.=||..+- +|.++.+++.+++||.| .|-|+.+
T Consensus 232 S~h~~~~~~-~a~---~~~~dyi~~gpvf~t~tk~~~~~~g~~~~~~~~~~~~~Pv~A---------------iGGI~~~ 292 (312)
T PRK08999 232 SCHDAEELA-RAQ---RLGVDFAVLSPVQPTASHPGAAPLGWEGFAALIAGVPLPVYA---------------LGGLGPG 292 (312)
T ss_pred ecCCHHHHH-HHH---hcCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhCCCCEEE---------------ECCCCHH
Confidence 345676654 332 479999998755 3456776543 68899999999999987 4667654
Q ss_pred hHHHHHHHHHHHhcccEee
Q 013861 401 RVMMESLMCLRRAGADIIL 419 (435)
Q Consensus 401 ~~v~Esl~~ikRAGAd~Ii 419 (435)
.+..++.+||+.|-
T Consensus 293 -----~~~~~~~~g~~gva 306 (312)
T PRK08999 293 -----DLEEAREHGAQGIA 306 (312)
T ss_pred -----HHHHHHHhCCCEEE
Confidence 34567788998763
No 173
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=64.80 E-value=26 Score=33.99 Aligned_cols=66 Identities=21% Similarity=0.307 Sum_probs=43.6
Q ss_pred ccccEEecccCCCcccCC-------CchHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHh
Q 013861 341 EGADILLFSVLGSQVKPG-------LPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRA 413 (435)
Q Consensus 341 EGADilM~~~~~~~VKPa-------l~YLDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G~ide~~~v~Esl~~ikRA 413 (435)
.|+|+|-+..---+++.. -...+|++.+|+.+++||.+ .+++. .+.+ -+.|....+..+
T Consensus 123 ~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~v-Kl~~~------------~~~~-~~~~~a~~l~~~ 188 (289)
T cd02810 123 AGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLV-KLSPY------------FDLE-DIVELAKAAERA 188 (289)
T ss_pred hCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEE-EeCCC------------CCHH-HHHHHHHHHHHc
Confidence 489999744322222211 13578999999988999874 45432 3433 356778888999
Q ss_pred cccEeeh
Q 013861 414 GADIILT 420 (435)
Q Consensus 414 GAd~IiT 420 (435)
|||.|..
T Consensus 189 Gad~i~~ 195 (289)
T cd02810 189 GADGLTA 195 (289)
T ss_pred CCCEEEE
Confidence 9999885
No 174
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=64.53 E-value=47 Score=33.70 Aligned_cols=125 Identities=22% Similarity=0.270 Sum_probs=79.8
Q ss_pred HHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCC---------CCC
Q 013861 200 PRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSD---------MMD 270 (435)
Q Consensus 200 ~raIr~iK~~~Pdl~IitDVcLc~YTshGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSD---------MMD 270 (435)
...++.|.+.. ++=|++|. ++|+=+. ..+ ++..-.+.+||+--|--.| +++
T Consensus 64 ~~~~~~I~~~~-~lPv~aD~---------------d~GyG~~-~~v---~~tV~~~~~aGvagi~IEDq~~pk~cg~~~~ 123 (290)
T TIGR02321 64 LEMMRAIASTV-SIPLIADI---------------DTGFGNA-VNV---HYVVPQYEAAGASAIVMEDKTFPKDTSLRTD 123 (290)
T ss_pred HHHHHHHHhcc-CCCEEEEC---------------CCCCCCc-HHH---HHHHHHHHHcCCeEEEEeCCCCCcccccccC
Confidence 35566676665 45567664 3444332 223 3334456688985444444 234
Q ss_pred c---------hHHHHHHHHHHCCCCCceeechhhhhcccccccchhhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccc
Q 013861 271 G---------RVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESE 341 (435)
Q Consensus 271 G---------rVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~E 341 (435)
| .+..||.+.+...=.+.-|++-+--|... ...+|||+.+..=.+-
T Consensus 124 g~~~l~~~ee~~~kI~Aa~~a~~~~d~~I~ARTDa~~~~-------------------------~g~deAI~Ra~aY~eA 178 (290)
T TIGR02321 124 GRQELVRIEEFQGKIAAATAARADRDFVVIARVEALIAG-------------------------LGQQEAVRRGQAYEEA 178 (290)
T ss_pred CCccccCHHHHHHHHHHHHHhCCCCCEEEEEEecccccc-------------------------CCHHHHHHHHHHHHHc
Confidence 5 15677777776533567787765433110 0128999999999999
Q ss_pred cccEEecccCCCcccCC-CchHHHHHHHHhhCC--CCeE
Q 013861 342 GADILLFSVLGSQVKPG-LPYLDVIRLLRDKYP--LPIA 377 (435)
Q Consensus 342 GADilM~~~~~~~VKPa-l~YLDIIr~vk~~~~--lPva 377 (435)
|||+|+ | |+ +.-.|-|+++.+.++ +|+.
T Consensus 179 GAD~if-------v-~~~~~~~~ei~~~~~~~~~p~pv~ 209 (290)
T TIGR02321 179 GADAIL-------I-HSRQKTPDEILAFVKSWPGKVPLV 209 (290)
T ss_pred CCCEEE-------e-cCCCCCHHHHHHHHHhcCCCCCeE
Confidence 999999 8 76 467899999998886 5776
No 175
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=64.41 E-value=31 Score=34.90 Aligned_cols=64 Identities=27% Similarity=0.467 Sum_probs=43.9
Q ss_pred ccccEEecccCCCcccCCCc-------hHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHh
Q 013861 341 EGADILLFSVLGSQVKPGLP-------YLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRA 413 (435)
Q Consensus 341 EGADilM~~~~~~~VKPal~-------YLDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G~ide~~~v~Esl~~ikRA 413 (435)
-|||.|-+.+-...++|.+. +.+|++.+++..++||.+=- ++ .++ -+.|....+.++
T Consensus 124 ~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~~iPv~vKl-~p------------~~~---~~~~~a~~l~~~ 187 (325)
T cd04739 124 AGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAVTIPVAVKL-SP------------FFS---ALAHMAKQLDAA 187 (325)
T ss_pred cCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhccCCCEEEEc-CC------------Ccc---CHHHHHHHHHHc
Confidence 38999975543334566542 47999999999999998752 22 112 256677778888
Q ss_pred cccEeeh
Q 013861 414 GADIILT 420 (435)
Q Consensus 414 GAd~IiT 420 (435)
|||.|+.
T Consensus 188 Gadgi~~ 194 (325)
T cd04739 188 GADGLVL 194 (325)
T ss_pred CCCeEEE
Confidence 9998864
No 176
>PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D.
Probab=64.37 E-value=15 Score=37.13 Aligned_cols=145 Identities=24% Similarity=0.335 Sum_probs=86.2
Q ss_pred HHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCCCce-----eechhhhhcccccccchhhhcCCCC-----CCCccc
Q 013861 251 QAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVS-----IMSYTAKYASSFYGPFREALDSNPR-----FGDKKT 320 (435)
Q Consensus 251 ~Avs~A~AGADiVAPSDMMDGrVgAIR~aLD~~Gf~~v~-----IMSYSaKyASafYGPFRdA~~Sap~-----fgDRkt 320 (435)
.|....+||+|+|-=-|.+ +.--.||.+|. -|-|-+| -.|.++..+.- || |
T Consensus 28 ~A~~~d~agvD~iLVGDSl---------gmv~~G~~sT~~vtld~mi~h~~-------aV~Rga~~~~vv~DmPf~---s 88 (261)
T PF02548_consen 28 SARIADEAGVDIILVGDSL---------GMVVLGYDSTLPVTLDEMIYHTK-------AVRRGAPNAFVVADMPFG---S 88 (261)
T ss_dssp HHHHHHHTT-SEEEE-TTH---------HHHTT--SSSTT--HHHHHHHHH-------HHHHH-TSSEEEEE--TT---S
T ss_pred HHHHHHHcCCCEEEeCCcH---------HHheeCCCCCcCcCHHHHHHHHH-------HHHhcCCCceEEecCCcc---c
Confidence 4555667899988877764 22234553321 2334332 23333333322 44 7
Q ss_pred cCCCCCCHHHHHHHHHhccc-ccccEEecccCCCcccCCCchHHHHHHHHhhCCCCeEEEE--------echHHHHHHHH
Q 013861 321 YQMNPANYREALVEAQADES-EGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAAYQ--------VSGEYSMIKAG 391 (435)
Q Consensus 321 YQmdp~N~~EAlre~~~D~~-EGADilM~~~~~~~VKPal~YLDIIr~vk~~~~lPvaaYq--------VSGEYaMikaA 391 (435)
|| .+.++|++.+.+=++ -|||+|- +.-+.-..|+|+.+.+ -.+||.+-= --|-|..
T Consensus 89 y~---~s~e~av~nA~rl~ke~GadaVK-------lEGg~~~~~~i~~l~~-~GIPV~gHiGLtPQ~~~~~GGyr~---- 153 (261)
T PF02548_consen 89 YQ---ASPEQAVRNAGRLMKEAGADAVK-------LEGGAEIAETIKALVD-AGIPVMGHIGLTPQSVHQLGGYRV---- 153 (261)
T ss_dssp ST---SSHHHHHHHHHHHHHTTT-SEEE-------EEBSGGGHHHHHHHHH-TT--EEEEEES-GGGHHHHTSS------
T ss_pred cc---CCHHHHHHHHHHHHHhcCCCEEE-------eccchhHHHHHHHHHH-CCCcEEEEecCchhheeccCCceE----
Confidence 88 678999999999888 8999999 9999889999999887 689987631 0222221
Q ss_pred HHCCC-CchhhHHHHHHHHHHHhcccEee-hhcHHHHHHHHh
Q 013861 392 GALKM-IDEQRVMMESLMCLRRAGADIIL-TYFALQAARCLC 431 (435)
Q Consensus 392 a~~G~-ide~~~v~Esl~~ikRAGAd~Ii-TYfA~~~a~~L~ 431 (435)
.|= -++.+-++|--.++-.|||-.|+ .---.++|+++.
T Consensus 154 --qGk~~~~a~~l~~~A~ale~AGaf~ivlE~vp~~la~~It 193 (261)
T PF02548_consen 154 --QGKTAEEAEKLLEDAKALEEAGAFAIVLECVPAELAKAIT 193 (261)
T ss_dssp --CSTSHHHHHHHHHHHHHHHHHT-SEEEEESBBHHHHHHHH
T ss_pred --EecCHHHHHHHHHHHHHHHHcCccEEeeecCHHHHHHHHH
Confidence 121 13446788999999999998775 334455666654
No 177
>PRK09234 fbiC FO synthase; Reviewed
Probab=64.21 E-value=32 Score=39.75 Aligned_cols=90 Identities=24% Similarity=0.380 Sum_probs=61.3
Q ss_pred CccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccC---CCchHHHHHHHHhhC-CCCeEEEEechHHHHHHHHH
Q 013861 317 DKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKP---GLPYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGG 392 (435)
Q Consensus 317 DRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKP---al~YLDIIr~vk~~~-~lPvaaYqVSGEYaMikaAa 392 (435)
+...|.|++ +|.+.++..-.+.|+.=+.+. -| +.| .-.|+|+++.+|+++ ++.+-||.-. -....|.
T Consensus 551 ~~~~y~Ls~---eeI~~~a~ea~~~G~tev~i~-gG--~~p~~~~~~y~~lir~IK~~~p~i~i~afsp~---Ei~~~a~ 621 (843)
T PRK09234 551 DADAYTLSL---DEVADRAWEAWVAGATEVCMQ-GG--IHPELPGTGYADLVRAVKARVPSMHVHAFSPM---EIVNGAA 621 (843)
T ss_pred CCCcccCCH---HHHHHHHHHHHHCCCCEEEEe-cC--CCCCcCHHHHHHHHHHHHHhCCCeeEEecChH---HHHHHHH
Confidence 445888855 566666665566888755422 23 344 346899999999998 5888777421 2234567
Q ss_pred HCCCCchhhHHHHHHHHHHHhcccEeeh
Q 013861 393 ALKMIDEQRVMMESLMCLRRAGADIILT 420 (435)
Q Consensus 393 ~~G~ide~~~v~Esl~~ikRAGAd~IiT 420 (435)
..|+..+ |.|..+|.||.|.+--
T Consensus 622 ~~Gl~~~-----e~l~~LkeAGLds~pg 644 (843)
T PRK09234 622 RLGLSIR-----EWLTALREAGLDTIPG 644 (843)
T ss_pred HcCCCHH-----HHHHHHHHhCcCccCC
Confidence 7787544 8899999999998754
No 178
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=63.99 E-value=26 Score=34.73 Aligned_cols=92 Identities=14% Similarity=0.117 Sum_probs=59.8
Q ss_pred CCHHHHHHHHHhcccccccEEecccCCCcccCCC---chHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHC--C--CCc
Q 013861 326 ANYREALVEAQADESEGADILLFSVLGSQVKPGL---PYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGAL--K--MID 398 (435)
Q Consensus 326 ~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal---~YLDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~--G--~id 398 (435)
.+...++..+..-+++|||+|= +|-.+-|.- -...+|+.+++.+++|+..= |-....+++|.+. | +|+
T Consensus 22 ~d~~~i~~~A~~~~~~GAdiID---Vg~~~~~~eE~~r~~~~v~~l~~~~~~plsID--T~~~~v~eaaL~~~~G~~iIN 96 (261)
T PRK07535 22 KDAAFIQKLALKQAEAGADYLD---VNAGTAVEEEPETMEWLVETVQEVVDVPLCID--SPNPAAIEAGLKVAKGPPLIN 96 (261)
T ss_pred CCHHHHHHHHHHHHHCCCCEEE---ECCCCCchhHHHHHHHHHHHHHHhCCCCEEEe--CCCHHHHHHHHHhCCCCCEEE
Confidence 3667888999999999999998 444444332 35668888888889998432 4445667777765 4 333
Q ss_pred hhhH----HHHHHHHHHHhcccEeehhc
Q 013861 399 EQRV----MMESLMCLRRAGADIILTYF 422 (435)
Q Consensus 399 e~~~----v~Esl~~ikRAGAd~IiTYf 422 (435)
.=.. .-+.+.-+++.|+.+|+...
T Consensus 97 sIs~~~~~~~~~~~l~~~~g~~vv~m~~ 124 (261)
T PRK07535 97 SVSAEGEKLEVVLPLVKKYNAPVVALTM 124 (261)
T ss_pred eCCCCCccCHHHHHHHHHhCCCEEEEec
Confidence 2111 22344457788999987543
No 179
>cd08212 RuBisCO_large_I Ribulose bisphosphate carboxylase large chain, Form I. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form I is the most abundant class, present in plants, algae, and bacteria, and forms large complexes composed of 8 large and 8 small subunits.
Probab=63.93 E-value=21 Score=38.53 Aligned_cols=134 Identities=16% Similarity=0.162 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHHHHcCCCeecCC--------CCCCchHHHHHHHHHHCCCCCceeechhhhhcccccccchhhhcCCCC
Q 013861 243 ETVHQLCKQAVSQARAGADVVSPS--------DMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPR 314 (435)
Q Consensus 243 ~Tv~~Lak~Avs~A~AGADiVAPS--------DMMDGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRdA~~Sap~ 314 (435)
-|-+.+++++-.++..|.|+|==- .=++-||.++.++++++. + .
T Consensus 158 lsp~~~A~~~~~~~~GGvD~IKDDE~l~~~~~~p~~~Rv~~~~~a~~~a~-------------------------~---e 209 (450)
T cd08212 158 LSAKNYGRVVYECLRGGLDFTKDDENINSQPFMRWRDRFLFVAEAVNKAQ-------------------------A---E 209 (450)
T ss_pred CCHHHHHHHHHHHHccCCcccccCccCCCCCCCCHHHHHHHHHHHHHHHH-------------------------H---h
Confidence 467889999999999999987311 112233433333333321 1 1
Q ss_pred CCCccccCCCCC-C-HHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHh---hCCCCeEEEE-echHHHHH
Q 013861 315 FGDKKTYQMNPA-N-YREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRD---KYPLPIAAYQ-VSGEYSMI 388 (435)
Q Consensus 315 fgDRktYQmdp~-N-~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~---~~~lPvaaYq-VSGEYaMi 388 (435)
-|-++-|-.|.. . ..|.++.+..=.++|++.+|++++ .=++.++.+++ ..++||-+-- .+|-|.
T Consensus 210 TG~~~~y~~NiTa~~~~em~~ra~~a~~~G~~~~mv~~~--------~G~~~l~~l~~~a~~~~l~IhaHrA~~ga~~-- 279 (450)
T cd08212 210 TGEVKGHYLNVTAGTMEEMYKRAEFAKELGSPIIMHDLL--------TGFTAIQSLAKWCRDNGMLLHLHRAGHATYD-- 279 (450)
T ss_pred hCCcceeeccccCCCHHHHHHHHHHHHHhCCCeEeeecc--------cccchHHHHHHHhhhcCceEEeccccceecc--
Confidence 277888998876 4 789999999989999999994322 13556666665 6799986522 222221
Q ss_pred HHHHHCCCCchhhHHHHHHHHHHHhcccEeeh
Q 013861 389 KAGGALKMIDEQRVMMESLMCLRRAGADIILT 420 (435)
Q Consensus 389 kaAa~~G~ide~~~v~Esl~~ikRAGAd~IiT 420 (435)
..-..|+ +. .++ -+-+|=||||.|++
T Consensus 280 -r~~~~Gi-s~--~vl--~kl~RLaGaD~ih~ 305 (450)
T cd08212 280 -RQKNHGI-HF--RVL--AKWLRLSGVDHIHA 305 (450)
T ss_pred -cCccCCc-CH--HHH--HHHHHHcCCCcccc
Confidence 1112343 22 334 33457799999885
No 180
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=63.61 E-value=88 Score=31.96 Aligned_cols=128 Identities=17% Similarity=0.192 Sum_probs=69.1
Q ss_pred hHHHhhhhcCCCCCCCceeeEEEeeCCCCcccCCCCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcC
Q 013861 113 PAMRASFQETNLSPANFVYPLFIHEGEEDTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEA 192 (435)
Q Consensus 113 ~~~R~l~~Et~L~~~~LI~PlFV~eg~~~~~I~sMPGv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A 192 (435)
..+|++.+-+. .||.|.-+.. |+-...+...|+++.+.|+-.|.|==.+.+ | .+|-..
T Consensus 67 ~~~~~I~~~~~-------lPv~aD~dtG------------yG~~~~v~r~V~~~~~aGaagi~IEDq~~p--K-~cg~~~ 124 (294)
T TIGR02319 67 INAKNIVLAVD-------VPVIMDADAG------------YGNAMSVWRATREFERVGIVGYHLEDQVNP--K-RCGHLE 124 (294)
T ss_pred HHHHHHHhccC-------CCEEEECCCC------------CCCcHHHHHHHHHHHHcCCeEEEEECCCCc--c-ccCCCC
Confidence 35566666555 4987764333 111123667789999999999887111100 0 122111
Q ss_pred ---cCCCCCHHHHHHHHHHHC--CCeEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCC
Q 013861 193 ---YNDNGLVPRTIWLLKDRY--PDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSD 267 (435)
Q Consensus 193 ---~~~~g~v~raIr~iK~~~--Pdl~IitDVcLc~YTshGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSD 267 (435)
.-+-.-..+-|++.++.- ||++|++=+-- +.. .| -|+++++ +..|++||||+|-+-.
T Consensus 125 ~k~lv~~ee~~~kI~Aa~~A~~~~d~~I~ARTDa--~~~---------~g---~deaI~R----a~aY~eAGAD~ifi~~ 186 (294)
T TIGR02319 125 GKRLISTEEMTGKIEAAVEAREDEDFTIIARTDA--RES---------FG---LDEAIRR----SREYVAAGADCIFLEA 186 (294)
T ss_pred CccccCHHHHHHHHHHHHHhccCCCeEEEEEecc--ccc---------CC---HHHHHHH----HHHHHHhCCCEEEecC
Confidence 111112345566666543 67888753221 211 12 2666665 7889999999998866
Q ss_pred CCC-chHHHHHHHH
Q 013861 268 MMD-GRVGAIRAAL 280 (435)
Q Consensus 268 MMD-GrVgAIR~aL 280 (435)
+-| -.|..+.+.+
T Consensus 187 ~~~~~ei~~~~~~~ 200 (294)
T TIGR02319 187 MLDVEEMKRVRDEI 200 (294)
T ss_pred CCCHHHHHHHHHhc
Confidence 554 2344444443
No 181
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=63.59 E-value=69 Score=31.04 Aligned_cols=136 Identities=21% Similarity=0.294 Sum_probs=74.9
Q ss_pred ccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCCCceeechhhhhcccccccchhhhcCCCCCCCcc
Q 013861 240 MNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKK 319 (435)
Q Consensus 240 dND~Tv~~Lak~Avs~A~AGADiVAPSDMMDGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRdA~~Sap~fgDRk 319 (435)
..++.++.||++|..| .-.+=+|.|+ .|...|+.|...+..-..+.+| | ||.
T Consensus 15 ~t~~~i~~lc~~A~~~-~~~avcv~p~-----~v~~a~~~l~~~~v~v~tVigF----------P----------~G~-- 66 (211)
T TIGR00126 15 TTEEDIITLCAQAKTY-KFAAVCVNPS-----YVPLAKELLKGTEVRICTVVGF----------P----------LGA-- 66 (211)
T ss_pred CCHHHHHHHHHHHHhh-CCcEEEeCHH-----HHHHHHHHcCCCCCeEEEEeCC----------C----------CCC--
Confidence 5788899999999877 2233344443 5666666663221111111111 1 231
Q ss_pred ccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCchH---HHHHHHHhhC-CCCeEEEEechHHHHHHHHHHCC
Q 013861 320 TYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPYL---DVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALK 395 (435)
Q Consensus 320 tYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YL---DIIr~vk~~~-~lPvaaYqVSGEYaMikaAa~~G 395 (435)
....--+.|++.=++.|||-|-+.+--..+|.+ -|- +-|+.+++.. ++|+-+ + .+.|
T Consensus 67 ------~~~~~K~~E~~~Av~~GAdEiDvv~n~g~l~~g-~~~~v~~ei~~i~~~~~g~~lKv--I----------lE~~ 127 (211)
T TIGR00126 67 ------STTDVKLYETKEAIKYGADEVDMVINIGALKDG-NEEVVYDDIRAVVEACAGVLLKV--I----------IETG 127 (211)
T ss_pred ------CcHHHHHHHHHHHHHcCCCEEEeecchHhhhCC-cHHHHHHHHHHHHHHcCCCeEEE--E----------EecC
Confidence 123333555555567788866532222334443 233 3444555544 566655 1 3456
Q ss_pred CCchhhHHHHHHHHHHHhcccEeehh--cH
Q 013861 396 MIDEQRVMMESLMCLRRAGADIILTY--FA 423 (435)
Q Consensus 396 ~ide~~~v~Esl~~ikRAGAd~IiTY--fA 423 (435)
.++.++.. ..-.....+|||+|=|. |.
T Consensus 128 ~L~~~ei~-~a~~ia~eaGADfvKTsTGf~ 156 (211)
T TIGR00126 128 LLTDEEIR-KACEICIDAGADFVKTSTGFG 156 (211)
T ss_pred CCCHHHHH-HHHHHHHHhCCCEEEeCCCCC
Confidence 66665443 66667788999999998 76
No 182
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=63.25 E-value=2.5e+02 Score=31.21 Aligned_cols=154 Identities=12% Similarity=0.165 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHHHcCCCeecCCCCCC-chHHHHHHHHHHCCCCCceee---c----hhhhhcccccccchhhhcCCCCC
Q 013861 244 TVHQLCKQAVSQARAGADVVSPSDMMD-GRVGAIRAALDAEGFQHVSIM---S----YTAKYASSFYGPFREALDSNPRF 315 (435)
Q Consensus 244 Tv~~Lak~Avs~A~AGADiVAPSDMMD-GrVgAIR~aLD~~Gf~~v~IM---S----YSaKyASafYGPFRdA~~Sap~f 315 (435)
+-+.+++.+....++||.||.=..=-. -.|.+||++|+ +..-+..- . =-+..+-.-+..|.+.+.+.+
T Consensus 248 ~p~~~~~~~~~~~~~Ga~iiGGCCgt~P~hI~~la~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~-- 323 (612)
T PRK08645 248 NPEYFAEYALEFVEQGVRLIGGCCGTTPEHIRAMARALK--GLKPVTEKEVKPRPKVVVTEEPLKAKSSLLDKLKKGK-- 323 (612)
T ss_pred CHHHHHHHHHHHHHhCCCEEeEecCCCHHHHHHHHHHhc--cCCCccccccccccccccccccccccchHHHHHhCCC--
Confidence 445688889999999999996433222 38999999996 33222211 0 012256667889999997633
Q ss_pred CCccccCCCCCCH--HHHHHHHHhcccc-cccEEecccCCCcccCCCchHHHHHHHHhhCCCCeEEEEechHHHHHHHHH
Q 013861 316 GDKKTYQMNPANY--REALVEAQADESE-GADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGG 392 (435)
Q Consensus 316 gDRktYQmdp~N~--~EAlre~~~D~~E-GADilM~~~~~~~VKPal~YLDIIr~vk~~~~lPvaaYqVSGEYaMikaAa 392 (435)
+-||.+.|.-. .+.+.+....+.+ |.|.+-..- |..=.+-+.-+.+...+++.+++|+..+-. .
T Consensus 324 --~vs~E~~PPk~~~~~~l~~~~~~L~~~~~d~i~Vtd-~~~g~~r~~s~~~a~~l~~~~gi~~i~Hlt-c--------- 390 (612)
T PRK08645 324 --TVIVELDPPKGLDTDKFLEGAKALKEAGVDAITLAD-NPLARVRISNIALASLIKRELGIEPLVHIT-C--------- 390 (612)
T ss_pred --eEEEEECCCCCCCHHHHHHHHHHHhcCCCCEEEcCC-CCCcccccCHHHHHHHHHHHhCCCeeeEec-C---------
Confidence 35888877633 4667777777775 589887211 111146677899999999999999987543 2
Q ss_pred HCCCCchhh-HHHHHHHHHHHhcccEe
Q 013861 393 ALKMIDEQR-VMMESLMCLRRAGADII 418 (435)
Q Consensus 393 ~~G~ide~~-~v~Esl~~ikRAGAd~I 418 (435)
.|..+ .+.+.|..+..+|.+=|
T Consensus 391 ----~d~n~~~l~~~L~~~~~~Gv~nI 413 (612)
T PRK08645 391 ----RDRNLIGLQSHLLGLHALGIRNV 413 (612)
T ss_pred ----CCcCHHHHHHHHHHHHHcCCceE
Confidence 23333 34455778888888755
No 183
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=63.17 E-value=97 Score=31.20 Aligned_cols=111 Identities=23% Similarity=0.298 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHHHHcCCCee--------------cC--CCCCC--------------chHHHHHHHHHHCCCCCceee
Q 013861 242 DETVHQLCKQAVSQARAGADVV--------------SP--SDMMD--------------GRVGAIRAALDAEGFQHVSIM 291 (435)
Q Consensus 242 D~Tv~~Lak~Avs~A~AGADiV--------------AP--SDMMD--------------GrVgAIR~aLD~~Gf~~v~IM 291 (435)
...++..++.|....+||.|.| +| ..--| =.|.+||+++ | .+..|+
T Consensus 150 ~~ii~~~~~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~v---G-~d~~v~ 225 (336)
T cd02932 150 AEVVDAFVAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVW---P-EDKPLF 225 (336)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHc---C-CCceEE
Confidence 6788889999999999999998 34 23333 2456666665 3 233332
Q ss_pred chhhhhcccccccchhhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCC---cccC--CCchHHHHH
Q 013861 292 SYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGS---QVKP--GLPYLDVIR 366 (435)
Q Consensus 292 SYSaKyASafYGPFRdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~---~VKP--al~YLDIIr 366 (435)
.|+...=|. ...+ ...|++.-+..=.+.|.|+|=+|.-|. +.-| ...++|.++
T Consensus 226 ---vri~~~~~~--------------~~g~-----~~~e~~~ia~~Le~~gvd~iev~~g~~~~~~~~~~~~~~~~~~~~ 283 (336)
T cd02932 226 ---VRISATDWV--------------EGGW-----DLEDSVELAKALKELGVDLIDVSSGGNSPAQKIPVGPGYQVPFAE 283 (336)
T ss_pred ---EEEcccccC--------------CCCC-----CHHHHHHHHHHHHHcCCCEEEECCCCCCcccccCCCccccHHHHH
Confidence 244321111 0011 135554433221235889887543221 1112 234689999
Q ss_pred HHHhhCCCCeEE
Q 013861 367 LLRDKYPLPIAA 378 (435)
Q Consensus 367 ~vk~~~~lPvaa 378 (435)
.+|+.+++||.+
T Consensus 284 ~ir~~~~iPVi~ 295 (336)
T cd02932 284 RIRQEAGIPVIA 295 (336)
T ss_pred HHHhhCCCCEEE
Confidence 999999999975
No 184
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=63.06 E-value=15 Score=36.31 Aligned_cols=108 Identities=19% Similarity=0.219 Sum_probs=67.4
Q ss_pred cCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCC--------CCchHHHHHHHHHHCCCCCceeechhhhhcccccccc
Q 013861 234 REDGVIMNDETVHQLCKQAVSQARAGADVVSPSDM--------MDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPF 305 (435)
Q Consensus 234 ~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDM--------MDGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPF 305 (435)
++||.|| -+.++.|++- +.+.|+|-|.+-+- .+=|...++...+..+ .+++|+.-.
T Consensus 13 ~~dg~iD-~~~l~~l~~~---l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~-~~~pvi~gv----------- 76 (289)
T cd00951 13 DADGSFD-EDAYRAHVEW---LLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETA-GRVPVLAGA----------- 76 (289)
T ss_pred CCCCCcC-HHHHHHHHHH---HHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhC-CCCCEEEec-----------
Confidence 3567776 3445555544 45689998876553 2345666777776654 456666321
Q ss_pred hhhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCch-------HHHHHHHHhhCCCCeEE
Q 013861 306 REALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPY-------LDVIRLLRDKYPLPIAA 378 (435)
Q Consensus 306 RdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~Y-------LDIIr~vk~~~~lPvaa 378 (435)
.. |.+|+++.++.=.+-|||.+| |=|-..+ .+-.+.+.+.+++||..
T Consensus 77 ------------------~~-~t~~~i~~a~~a~~~Gad~v~-------~~pP~y~~~~~~~i~~~f~~v~~~~~~pi~l 130 (289)
T cd00951 77 ------------------GY-GTATAIAYAQAAEKAGADGIL-------LLPPYLTEAPQEGLYAHVEAVCKSTDLGVIV 130 (289)
T ss_pred ------------------CC-CHHHHHHHHHHHHHhCCCEEE-------ECCCCCCCCCHHHHHHHHHHHHhcCCCCEEE
Confidence 11 456666666655677999999 5543322 34445666778899999
Q ss_pred EEech
Q 013861 379 YQVSG 383 (435)
Q Consensus 379 YqVSG 383 (435)
||-+|
T Consensus 131 Yn~~g 135 (289)
T cd00951 131 YNRAN 135 (289)
T ss_pred EeCCC
Confidence 98776
No 185
>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=62.96 E-value=30 Score=33.16 Aligned_cols=55 Identities=24% Similarity=0.358 Sum_probs=39.4
Q ss_pred ccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCC
Q 013861 188 TGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSD 267 (435)
Q Consensus 188 ~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTshGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSD 267 (435)
.|.+-+-..| .+.|+.||+.||+..|++|.-+. |.+.|+... .+++|||++.-..
T Consensus 34 vG~~l~~~~G--~~~i~~lk~~~~~~~v~~DLK~~-----------------Di~~~v~~~------~~~~Gad~vTvH~ 88 (216)
T PRK13306 34 VGTILLLAEG--MKAVRVLRALYPDKIIVADTKIA-----------------DAGKILAKM------AFEAGADWVTVIC 88 (216)
T ss_pred EChHHHHHhC--HHHHHHHHHHCCCCEEEEEEeec-----------------CCcHHHHHH------HHHCCCCEEEEeC
Confidence 4666676667 47899999999999999998873 223444433 5678888876654
No 186
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=62.37 E-value=45 Score=30.21 Aligned_cols=98 Identities=19% Similarity=0.278 Sum_probs=59.0
Q ss_pred cCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCch-HHHHHHHHhhCCCCe----EEEEechHHHHHHHHHHCC
Q 013861 321 YQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPY-LDVIRLLRDKYPLPI----AAYQVSGEYSMIKAGGALK 395 (435)
Q Consensus 321 YQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~Y-LDIIr~vk~~~~lPv----aaYqVSGEYaMikaAa~~G 395 (435)
+-+|+.+..++++++. +-|+|.|-+-+..-.+-|..++ +++++++++.++.|+ ..|+......++..+...|
T Consensus 7 ~~~d~~~~~~~~~~~~---~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~v~l~~~d~~~~~~~~~~~g~dg 83 (211)
T cd00429 7 LSADFANLGEELKRLE---EAGADWIHIDVMDGHFVPNLTFGPPVVKALRKHTDLPLDVHLMVENPERYIEAFAKAGADI 83 (211)
T ss_pred ecCCHHHHHHHHHHHH---HcCCCEEEEecccCCCCCccccCHHHHHHHHhhCCCcEEEEeeeCCHHHHHHHHHHcCCCE
Confidence 5578888888877776 4689999754333233455544 699999998765554 3343323333333333333
Q ss_pred --CCch-hhHHHHHHHHHHHhcccEeehh
Q 013861 396 --MIDE-QRVMMESLMCLRRAGADIILTY 421 (435)
Q Consensus 396 --~ide-~~~v~Esl~~ikRAGAd~IiTY 421 (435)
+-++ .....|.+..++..|..++++-
T Consensus 84 v~vh~~~~~~~~~~~~~~~~~~~~~g~~~ 112 (211)
T cd00429 84 ITFHAEATDHLHRTIQLIKELGMKAGVAL 112 (211)
T ss_pred EEECccchhhHHHHHHHHHHCCCeEEEEe
Confidence 1232 2355677778888888877755
No 187
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=62.37 E-value=1.4e+02 Score=30.56 Aligned_cols=101 Identities=23% Similarity=0.318 Sum_probs=59.0
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcC---cCCCCCHHHHHHHHHHH--CCCeEEEeeecccCCCCCCccee
Q 013861 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEA---YNDNGLVPRTIWLLKDR--YPDLVIYTDVALDPYSSDGHDGI 232 (435)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A---~~~~g~v~raIr~iK~~--~Pdl~IitDVcLc~YTshGHcGI 232 (435)
.+...|+++.+.|+-.|.|==.+.+ +| +|... ..+-.-...=|++.++. -+|++|++=+ |.|..+
T Consensus 94 ~v~r~V~~~~~aGaagi~IEDq~~p-K~--cg~~~~~~lv~~ee~~~kI~Aa~~a~~~~d~~IiART--Da~~~~----- 163 (292)
T PRK11320 94 NIARTVKSMIKAGAAAVHIEDQVGA-KR--CGHRPNKEIVSQEEMVDRIKAAVDARTDPDFVIMART--DALAVE----- 163 (292)
T ss_pred HHHHHHHHHHHcCCeEEEEecCCCc-cc--cCCCCCCcccCHHHHHHHHHHHHHhccCCCeEEEEec--Cccccc-----
Confidence 4778899999999999887111100 11 23211 11222234455666654 4788888633 223221
Q ss_pred ecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHH
Q 013861 233 VREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALD 281 (435)
Q Consensus 233 v~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMMDGrVgAIR~aLD 281 (435)
| =|+++++ |..|++||||+|-+-.+=+ ...||+.-.
T Consensus 164 ----g---~deAI~R----a~aY~eAGAD~ifi~~~~~--~~~i~~~~~ 199 (292)
T PRK11320 164 ----G---LDAAIER----AQAYVEAGADMIFPEAMTE--LEMYRRFAD 199 (292)
T ss_pred ----C---HHHHHHH----HHHHHHcCCCEEEecCCCC--HHHHHHHHH
Confidence 2 2566655 7899999999998876544 556665544
No 188
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=62.15 E-value=18 Score=37.74 Aligned_cols=145 Identities=17% Similarity=0.211 Sum_probs=88.9
Q ss_pred HHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCCCce-----eechhhhhcccccccchhhhcCC-----CCCCCccc
Q 013861 251 QAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVS-----IMSYTAKYASSFYGPFREALDSN-----PRFGDKKT 320 (435)
Q Consensus 251 ~Avs~A~AGADiVAPSDMMDGrVgAIR~aLD~~Gf~~v~-----IMSYSaKyASafYGPFRdA~~Sa-----p~fgDRkt 320 (435)
.|....+||+|+|.-.|-. ..-..||.++- -|-|-+|= =+.++..+ -.|| |
T Consensus 47 sA~i~d~aGvD~ILVGDSl---------gmv~lG~~~T~~Vtld~mi~H~~a-------V~Rga~~a~vVaDmPfg---S 107 (332)
T PLN02424 47 SAVHVDSAGIDVCLVGDSA---------AMVVHGHDTTLPITLDEMLVHCRA-------VARGANRPLLVGDLPFG---S 107 (332)
T ss_pred HHHHHHHcCCCEEEECCcH---------HHHhcCCCCCCCcCHHHHHHHHHH-------HhccCCCCEEEeCCCCC---C
Confidence 3555667899999887754 22345665542 13333321 11122211 1234 6
Q ss_pred cCCCCCCHHHHHHHHHhccc-ccccEEecccCCCcccCC-CchHHHHHHHHhhCCCCeEE--------EEechHHHHHHH
Q 013861 321 YQMNPANYREALVEAQADES-EGADILLFSVLGSQVKPG-LPYLDVIRLLRDKYPLPIAA--------YQVSGEYSMIKA 390 (435)
Q Consensus 321 YQmdp~N~~EAlre~~~D~~-EGADilM~~~~~~~VKPa-l~YLDIIr~vk~~~~lPvaa--------YqVSGEYaMika 390 (435)
||-+ .++|++.+.+=++ -|||.|= +.-+ -..+++|+.+. .-.+||++ .+.-|-|..
T Consensus 108 Y~~s---~e~av~nA~rl~~eaGa~aVK-------lEGg~~~~~~~I~~l~-~~GIPV~gHiGLtPQs~~~lGGykv--- 173 (332)
T PLN02424 108 YESS---TDQAVESAVRMLKEGGMDAVK-------LEGGSPSRVTAAKAIV-EAGIAVMGHVGLTPQAISVLGGFRP--- 173 (332)
T ss_pred CCCC---HHHHHHHHHHHHHHhCCcEEE-------ECCCcHHHHHHHHHHH-HcCCCEEEeecccceeehhhcCccc---
Confidence 7764 4788888887654 6899998 8877 45789999999 68899982 222344432
Q ss_pred HHHCCCC-chhhHHHHHHHHHHHhcccEeehhcH-HHHHHHHh
Q 013861 391 GGALKMI-DEQRVMMESLMCLRRAGADIILTYFA-LQAARCLC 431 (435)
Q Consensus 391 Aa~~G~i-de~~~v~Esl~~ikRAGAd~IiTYfA-~~~a~~L~ 431 (435)
+|-- ++-+-++|-..++..|||+.|+-=.. .++++++.
T Consensus 174 ---qGr~~~~a~~li~dA~ale~AGAf~ivLE~Vp~~la~~It 213 (332)
T PLN02424 174 ---QGRTAESAVKVVETALALQEAGCFAVVLECVPAPVAAAIT 213 (332)
T ss_pred ---cCCCHHHHHHHHHHHHHHHHcCCcEEEEcCCcHHHHHHHH
Confidence 2211 23356889999999999999864333 23455543
No 189
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=62.12 E-value=1.1e+02 Score=28.71 Aligned_cols=89 Identities=25% Similarity=0.433 Sum_probs=64.2
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCC
Q 013861 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDG 237 (435)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTshGHcGIv~e~g 237 (435)
.+.+.++.+.+.|+..|++ .. .-.++.+|+.+|++-|++|+.+-
T Consensus 3 ~~~~~l~~l~~~g~dgi~v-~~--------------------~g~~~~~k~~~~~~~i~~~~~~n--------------- 46 (233)
T PF01136_consen 3 ELEKYLDKLKELGVDGILV-SN--------------------PGLLELLKELGPDLKIIADYSLN--------------- 46 (233)
T ss_pred HHHHHHHHHHhCCCCEEEE-cC--------------------HHHHHHHHHhCCCCcEEEecCcc---------------
Confidence 4778889999999999776 31 13789999999999999998762
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHC-CCCCceeech
Q 013861 238 VIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAE-GFQHVSIMSY 293 (435)
Q Consensus 238 ~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMMDGrVgAIR~aLD~~-Gf~~v~IMSY 293 (435)
|-|.+|++.+.+. |++-|..|-=+ ....|++..... +. .+-|+-|
T Consensus 47 -v~N~~s~~~~~~~-------G~~~i~ls~EL--~~~ei~~i~~~~~~~-~~Ev~v~ 92 (233)
T PF01136_consen 47 -VFNSESARFLKEL-------GASRITLSPEL--SLEEIKEIAENSPGV-PLEVIVH 92 (233)
T ss_pred -CCCHHHHHHHHHc-------CCCEEEECccC--CHHHHHHHHHhCCCC-eEEEEEe
Confidence 4588888877654 88866665544 566666666555 43 4444444
No 190
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=61.94 E-value=37 Score=37.67 Aligned_cols=223 Identities=17% Similarity=0.169 Sum_probs=124.3
Q ss_pred CceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCC
Q 013861 149 GCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDG 228 (435)
Q Consensus 149 Gv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTshG 228 (435)
|.-+|+ |+-+.+.++.+.+.|+..|-+|-.+. +-.-+..+|+..|+..-. +.. ++ .||...
T Consensus 90 g~~~yp-ddvv~~~v~~a~~~Gid~~rifd~ln-------------d~~~~~~ai~~ak~~G~~--~~~--~i-~yt~~p 150 (593)
T PRK14040 90 GYRHYA-DDVVERFVERAVKNGMDVFRVFDAMN-------------DPRNLETALKAVRKVGAH--AQG--TL-SYTTSP 150 (593)
T ss_pred ccccCc-HHHHHHHHHHHHhcCCCEEEEeeeCC-------------cHHHHHHHHHHHHHcCCe--EEE--EE-EEeeCC
Confidence 344444 33467789999999999999984322 212466789999887532 222 22 233211
Q ss_pred cceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCc--------hHHHHHHHHHH-CCC--CCceeechhhhh
Q 013861 229 HDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDG--------RVGAIRAALDA-EGF--QHVSIMSYTAKY 297 (435)
Q Consensus 229 HcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMMDG--------rVgAIR~aLD~-~Gf--~~v~IMSYSaKy 297 (435)
.+ |++.+.+.|-...++|||+|+-.||.=+ .|.+||+.++- -|| +|+.=|+-+.-.
T Consensus 151 ----------~~---~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lk~~~~~pi~~H~Hnt~GlA~An~l 217 (593)
T PRK14040 151 ----------VH---TLQTWVDLAKQLEDMGVDSLCIKDMAGLLKPYAAYELVSRIKKRVDVPLHLHCHATTGLSTATLL 217 (593)
T ss_pred ----------cc---CHHHHHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHHhcCCeEEEEECCCCchHHHHHH
Confidence 12 4666666666677899999999999753 46777777531 122 445556655444
Q ss_pred cccccccchhhhcCCC-CCCCccccCCCCCCHH-HHHHHHHh--cccccccEEecccCCCcccCCCchHHHHHHHHhhC-
Q 013861 298 ASSFYGPFREALDSNP-RFGDKKTYQMNPANYR-EALVEAQA--DESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKY- 372 (435)
Q Consensus 298 ASafYGPFRdA~~Sap-~fgDRktYQmdp~N~~-EAlre~~~--D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~- 372 (435)
+..--|- +.++.+- .+|-+. +|.. |.+..+.. +.+-|-|+-. +....-|+.=|+..-+.+
T Consensus 218 aAieAGa--~~vD~ai~glG~~~------Gn~~le~vv~~L~~~~~~~gidl~~-------l~~is~~~~~v~~~Y~~~~ 282 (593)
T PRK14040 218 KAIEAGI--DGVDTAISSMSMTY------GHSATETLVATLEGTERDTGLDILK-------LEEIAAYFREVRKKYAKFE 282 (593)
T ss_pred HHHHcCC--CEEEeccccccccc------cchhHHHHHHHHHhcCCCcCCCHHH-------HHHHHHHHHHHHHHhccCC
Confidence 4444441 2344433 255442 3322 22222222 2334555544 444444444333322222
Q ss_pred ------CCCeEEEEechH-HH-HHHHHHHCCCCchhhHHHHHHHHHHHhcccEe
Q 013861 373 ------PLPIAAYQVSGE-YS-MIKAGGALKMIDEQRVMMESLMCLRRAGADII 418 (435)
Q Consensus 373 ------~lPvaaYqVSGE-Ya-MikaAa~~G~ide~~~v~Esl~~ikRAGAd~I 418 (435)
+.=|--||+.|= |+ +...+.+.|..|.=.-++|-+...++-.-++|
T Consensus 283 ~~~~~~~~~v~~~e~PGG~~Snl~~ql~~~g~~~~~~evl~e~~~v~~~lG~~~ 336 (593)
T PRK14040 283 GQLKGVDSRILVAQVPGGMLTNMESQLKEQGAADKLDEVLAEIPRVREDLGFIP 336 (593)
T ss_pred cccccCcccEEEEcCCCchHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCCC
Confidence 223667899987 44 55557888887755556666666666555554
No 191
>cd00502 DHQase_I Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase.) Catalyzes the cis-dehydration of 3-dehydroquinate via a covalent imine intermediate to produce dehydroshikimate. Dehydroquinase is the third enzyme in the shikimate pathway, which is involved in the biosynthesis of aromatic amino acids. Type I DHQase exists as a homodimer. Type II 3-dehydroquinase also catalyzes the same overall reaction, but is unrelated in terms of sequence and structure, and utilizes a completely different reaction mechanism.
Probab=61.08 E-value=27 Score=33.11 Aligned_cols=93 Identities=25% Similarity=0.276 Sum_probs=57.9
Q ss_pred CHHHHHHHHHhcccccccEEecccCCCcccC--CCchHHHHHHHHhhCCCCeEE-EEe---------c-hHH-HHHHHHH
Q 013861 327 NYREALVEAQADESEGADILLFSVLGSQVKP--GLPYLDVIRLLRDKYPLPIAA-YQV---------S-GEY-SMIKAGG 392 (435)
Q Consensus 327 N~~EAlre~~~D~~EGADilM~~~~~~~VKP--al~YLDIIr~vk~~~~lPvaa-YqV---------S-GEY-aMikaAa 392 (435)
+..|++...+... |||+|=+-+=. .+. ...-.+.++.+++.+++|+.. |.- + .+| ..++.+.
T Consensus 11 ~~~e~~~~~~~~~--~aD~vElR~D~--~~~~~~~~~~~~~~~lr~~~~~piI~T~R~~~eGG~~~~~~~~~~~ll~~~~ 86 (225)
T cd00502 11 LLEEALSLLELLL--GADAVELRVDL--LEDPSIDDVAEQLSLLRELTPLPIIFTVRTKSEGGNFEGSEEEYLELLEEAL 86 (225)
T ss_pred CHHHHHHHHHHhc--CCCEEEEEEee--ccccchHHHHHHHHHHHHhCCCCEEEEEcccccCCCcCCCHHHHHHHHHHHH
Confidence 6777777666655 99997411100 111 112345777888878788754 221 1 234 5667777
Q ss_pred HCC--CCchhh---HHHHHHHHHHHhcccEeehhcH
Q 013861 393 ALK--MIDEQR---VMMESLMCLRRAGADIILTYFA 423 (435)
Q Consensus 393 ~~G--~ide~~---~v~Esl~~ikRAGAd~IiTYfA 423 (435)
+.| |+|-+- .+.|.+...++.|..+|++|+-
T Consensus 87 ~~~~d~vDiEl~~~~~~~~~~~~~~~~~kiI~S~H~ 122 (225)
T cd00502 87 KLGPDYVDIELDSALLEELINSRKKGNTKIIGSYHD 122 (225)
T ss_pred HHCCCEEEEEecchHHHHHHHHHHhCCCEEEEEecc
Confidence 765 566652 3667777777889999999983
No 192
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=61.08 E-value=1e+02 Score=31.63 Aligned_cols=109 Identities=24% Similarity=0.275 Sum_probs=63.5
Q ss_pred cHHHHHHHHHHHHHHHHcCCCee--------------cC-C--------CCCCchH-------HHHHHHHHHCCCCCcee
Q 013861 241 NDETVHQLCKQAVSQARAGADVV--------------SP-S--------DMMDGRV-------GAIRAALDAEGFQHVSI 290 (435)
Q Consensus 241 ND~Tv~~Lak~Avs~A~AGADiV--------------AP-S--------DMMDGrV-------gAIR~aLD~~Gf~~v~I 290 (435)
-++.++..++.|....+||.|.| +| + +-.++|. .+||++. +| .|.
T Consensus 137 I~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~~~---~~-~v~- 211 (337)
T PRK13523 137 IKETVLAFKQAAVRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEVW---DG-PLF- 211 (337)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHHhc---CC-CeE-
Confidence 35788888999999999999998 35 1 1233444 4555544 23 222
Q ss_pred echhhhhcccccccchhhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCccc-----CCCchHHHH
Q 013861 291 MSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVK-----PGLPYLDVI 365 (435)
Q Consensus 291 MSYSaKyASafYGPFRdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VK-----Pal~YLDII 365 (435)
.|....-|.+ | . + ..+|++.-+..=.+.|.|+|-+|. |++-. +...+++.+
T Consensus 212 ----vRis~~d~~~-----------~---G--~---~~~e~~~i~~~l~~~gvD~i~vs~-g~~~~~~~~~~~~~~~~~~ 267 (337)
T PRK13523 212 ----VRISASDYHP-----------G---G--L---TVQDYVQYAKWMKEQGVDLIDVSS-GAVVPARIDVYPGYQVPFA 267 (337)
T ss_pred ----EEecccccCC-----------C---C--C---CHHHHHHHHHHHHHcCCCEEEeCC-CCCCCCCCCCCccccHHHH
Confidence 2443322211 0 1 1 134444333333357999998653 43221 123468999
Q ss_pred HHHHhhCCCCeEE
Q 013861 366 RLLRDKYPLPIAA 378 (435)
Q Consensus 366 r~vk~~~~lPvaa 378 (435)
+.+|+..++||.+
T Consensus 268 ~~ik~~~~ipVi~ 280 (337)
T PRK13523 268 EHIREHANIATGA 280 (337)
T ss_pred HHHHhhcCCcEEE
Confidence 9999999999876
No 193
>PRK08444 hypothetical protein; Provisional
Probab=61.04 E-value=24 Score=36.54 Aligned_cols=110 Identities=16% Similarity=0.263 Sum_probs=70.2
Q ss_pred eeechhhhhcc--cccccchhhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCC---chHH
Q 013861 289 SIMSYTAKYAS--SFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGL---PYLD 363 (435)
Q Consensus 289 ~IMSYSaKyAS--afYGPFRdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal---~YLD 363 (435)
.++.| +.+++ +-|--|+.-- ++...|-|+ .+|.+.++..-.+.|+.=+.+. |+ ..|.. .|+|
T Consensus 51 ~~In~-TN~C~~~C~FCaf~~~~------~~~~~y~ls---~eeI~~~a~~a~~~G~~ei~iv--~G-~~p~~~~e~y~e 117 (353)
T PRK08444 51 RHINP-TNICADVCKFCAFSAHR------KNPNPYTMS---HEEILEIVKNSVKRGIKEVHIV--SA-HNPNYGYEWYLE 117 (353)
T ss_pred CCccc-ccccccCCccCCCccCC------CCCccccCC---HHHHHHHHHHHHHCCCCEEEEe--cc-CCCCCCHHHHHH
Confidence 55666 44544 5566665311 233458774 4676666766677898876622 22 44543 6899
Q ss_pred HHHHHHhhCC-CCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEee
Q 013861 364 VIRLLRDKYP-LPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIIL 419 (435)
Q Consensus 364 IIr~vk~~~~-lPvaaYqVSGEYaMikaAa~~G~ide~~~v~Esl~~ikRAGAd~Ii 419 (435)
+|+.+|+.++ +-+.|+.. +|..-+ |-..|+.. -|.|..+|.||.|-+-
T Consensus 118 ~ir~Ik~~~p~i~i~a~s~-~Ei~~~--a~~~g~~~-----~e~l~~LkeAGl~~~~ 166 (353)
T PRK08444 118 IFKKIKEAYPNLHVKAMTA-AEVDFL--SRKFGKSY-----EEVLEDMLEYGVDSMP 166 (353)
T ss_pred HHHHHHHHCCCceEeeCCH-HHHHHH--HHHcCCCH-----HHHHHHHHHhCcccCC
Confidence 9999999884 88888765 332222 33466543 4788899999999754
No 194
>cd08211 RuBisCO_large_II Ribulose bisphosphate carboxylase large chain, Form II. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form II is mainly found in bacteria, and forms large subunit oligomers (dimers, tetramers, etc.) that do not include small subunits.
Probab=61.04 E-value=29 Score=37.46 Aligned_cols=136 Identities=13% Similarity=0.065 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHHHHcCCCeecCC--------CCCCchHHHHHHHHHHCCCCCceeechhhhhcccccccchhhhcCCCC
Q 013861 243 ETVHQLCKQAVSQARAGADVVSPS--------DMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPR 314 (435)
Q Consensus 243 ~Tv~~Lak~Avs~A~AGADiVAPS--------DMMDGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRdA~~Sap~ 314 (435)
-|-+.+++++..++..| |+|==- .=++-||.++.++++++. +.
T Consensus 170 lsp~~~a~~~y~~~~GG-D~IKDDE~l~dq~~~p~~eRv~~~~~a~~~a~-------------------------~e--- 220 (439)
T cd08211 170 LRPKPFAEACYAFWLGG-DFIKNDEPQANQPFCPLKKVIPLVADAMRRAQ-------------------------DE--- 220 (439)
T ss_pred CCHHHHHHHHHHHHhcC-CccccccccCCCCCCCHHHHHHHHHHHHHHHH-------------------------Hh---
Confidence 46788999999999999 997311 112234444444443321 11
Q ss_pred CCCccccCCCCC--CHHHHHHHHHhcccccc-----cEEecccCCCcccCCCchHHHHHHHHhh-CCCCeEEEEechHHH
Q 013861 315 FGDKKTYQMNPA--NYREALVEAQADESEGA-----DILLFSVLGSQVKPGLPYLDVIRLLRDK-YPLPIAAYQVSGEYS 386 (435)
Q Consensus 315 fgDRktYQmdp~--N~~EAlre~~~D~~EGA-----DilM~~~~~~~VKPal~YLDIIr~vk~~-~~lPvaaYqVSGEYa 386 (435)
-|.|+-|-.|.. ..+|.++.++.=.++|+ ..+| |-+...=++.++.+++. .++||-+ |=.|-=+
T Consensus 221 TG~~~~ya~NiTa~~~~em~~ra~~a~~~gg~~~G~~~vM-------v~~~~~G~~al~~lr~~~~~l~Iha-HrA~~ga 292 (439)
T cd08211 221 TGEAKLFSANITADDPDEMIARGEYILEAFGPNAGHVAFL-------VDGYVAGPAAVTTARRRFPDQFLHY-HRAGHGA 292 (439)
T ss_pred hCCcceEEecCCCCCHHHHHHHHHHHHHhcCcccCceEEE-------ECcccchHHHHHHHHhhCCCcEEEe-ccccccc
Confidence 278899988887 57999999988778877 9999 88887779999999984 5798863 2211111
Q ss_pred HHHHHHHCCCCchhhHHHHHHHHHHHhcccEeeh
Q 013861 387 MIKAGGALKMIDEQRVMMESLMCLRRAGADIILT 420 (435)
Q Consensus 387 MikaAa~~G~ide~~~v~Esl~~ikRAGAd~IiT 420 (435)
|....-..|+ +. . ++= +-+|=||||.+.+
T Consensus 293 ~~r~~~~~Gi-s~-~-vl~--kl~RLaGaD~~h~ 321 (439)
T cd08211 293 VTSPQSKRGY-TA-F-VLS--KMARLQGASGIHT 321 (439)
T ss_pred ccccccCCCc-cH-H-HHH--HHHHhcCCCcccc
Confidence 1110111344 22 2 332 2345699999985
No 195
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=60.99 E-value=29 Score=36.15 Aligned_cols=70 Identities=27% Similarity=0.353 Sum_probs=48.5
Q ss_pred CCHHHHHHHHHhcccccccEEecccCC-CcccCCCch--HHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhhH
Q 013861 326 ANYREALVEAQADESEGADILLFSVLG-SQVKPGLPY--LDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRV 402 (435)
Q Consensus 326 ~N~~EAlre~~~D~~EGADilM~~~~~-~~VKPal~Y--LDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G~ide~~~ 402 (435)
.|..|+. ++. ++|||.|.|+-+. +.-||+.+. ++.++.+++.+++|+.| -|-|+.++
T Consensus 248 Hs~~e~~-~A~---~~GaDYI~lGPvf~T~tKp~~~~~Gle~l~~~~~~~~iPv~A---------------iGGI~~~n- 307 (347)
T PRK02615 248 TNPEEMA-KAI---AEGADYIGVGPVFPTPTKPGKAPAGLEYLKYAAKEAPIPWFA---------------IGGIDKSN- 307 (347)
T ss_pred CCHHHHH-HHH---HcCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhCCCCEEE---------------ECCCCHHH-
Confidence 3555543 332 5799999977554 455776433 79999999999999987 46677543
Q ss_pred HHHHHHHHHHhcccEee
Q 013861 403 MMESLMCLRRAGADIIL 419 (435)
Q Consensus 403 v~Esl~~ikRAGAd~Ii 419 (435)
+..++.+||+.|-
T Consensus 308 ----i~~l~~~Ga~gVA 320 (347)
T PRK02615 308 ----IPEVLQAGAKRVA 320 (347)
T ss_pred ----HHHHHHcCCcEEE
Confidence 4456778888763
No 196
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=60.84 E-value=49 Score=32.27 Aligned_cols=48 Identities=17% Similarity=0.310 Sum_probs=35.2
Q ss_pred HHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeec
Q 013861 159 LVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVA 220 (435)
Q Consensus 159 l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVc 220 (435)
-.++++++++.|..=|.|=.. . --.| -.+..-++.||++| .++|+|+.
T Consensus 53 T~~ev~~l~~aGadIIAlDaT-~----------R~Rp-~~l~~li~~i~~~~--~l~MADis 100 (192)
T PF04131_consen 53 TLKEVDALAEAGADIIALDAT-D----------RPRP-ETLEELIREIKEKY--QLVMADIS 100 (192)
T ss_dssp SHHHHHHHHHCT-SEEEEE-S-S----------SS-S-S-HHHHHHHHHHCT--SEEEEE-S
T ss_pred CHHHHHHHHHcCCCEEEEecC-C----------CCCC-cCHHHHHHHHHHhC--cEEeeecC
Confidence 378999999999999988553 1 1234 56788999999999 99999974
No 197
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=60.54 E-value=60 Score=30.34 Aligned_cols=50 Identities=14% Similarity=0.136 Sum_probs=35.4
Q ss_pred CCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhCCCCeEE
Q 013861 326 ANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAA 378 (435)
Q Consensus 326 ~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~~lPvaa 378 (435)
.|..|..+.-. +.|+|.+.+.-+...-+.....+++|+++++.+++||.+
T Consensus 30 ~~~~~~a~~~~---~~g~~~i~v~dld~~~~g~~~~~~~i~~i~~~~~~pv~~ 79 (233)
T PRK00748 30 DDPVAQAKAWE---DQGAKWLHLVDLDGAKAGKPVNLELIEAIVKAVDIPVQV 79 (233)
T ss_pred CCHHHHHHHHH---HcCCCEEEEEeCCccccCCcccHHHHHHHHHHCCCCEEE
Confidence 35555444433 379999987776443455568999999999999999754
No 198
>smart00642 Aamy Alpha-amylase domain.
Probab=60.48 E-value=45 Score=30.70 Aligned_cols=68 Identities=16% Similarity=0.291 Sum_probs=44.0
Q ss_pred hhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCC------------HHHHHHHHHHHCCCeEEEeeeccc
Q 013861 155 WRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGL------------VPRTIWLLKDRYPDLVIYTDVALD 222 (435)
Q Consensus 155 ~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~------------v~raIr~iK~~~Pdl~IitDVcLc 222 (435)
+. ++.+++..+.++|+++|.|=|+.+. .....+...|++-.. +.+.|+.++++ .+-||.|+-+.
T Consensus 18 ~~-gi~~~l~yl~~lG~~~I~l~Pi~~~-~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~--Gi~vilD~V~N 93 (166)
T smart00642 18 LQ-GIIEKLDYLKDLGVTAIWLSPIFES-PQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHAR--GIKVILDVVIN 93 (166)
T ss_pred HH-HHHHHHHHHHHCCCCEEEECcceeC-CCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHC--CCEEEEEECCC
Confidence 54 6889999999999999999775322 111112223332222 45666666665 79999999987
Q ss_pred CCCC
Q 013861 223 PYSS 226 (435)
Q Consensus 223 ~YTs 226 (435)
+...
T Consensus 94 H~~~ 97 (166)
T smart00642 94 HTSD 97 (166)
T ss_pred CCCC
Confidence 6544
No 199
>cd08602 GDPD_ScGlpQ1_like Glycerophosphodiester phosphodiesterase domain of Streptomycin coelicolor (GlpQ1) and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of putative bacterial and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) similar to Escherichia coli periplasmic phosphodiesterase GlpQ, as well as plant glycerophosphodiester phosphodiesterases (GP-PDEs), all of which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. The prototypes of this family include putative secreted phosphodiesterase encoded by gene glpQ1 (SCO1565) from the pho regulon in Streptomyces coelicolor genome, and in plants, two distinct Arabidopsis thaliana genes, AT5G08030 and AT1G74210, coding putative GP-PDEs from the cell walls and vacuoles, respectively.
Probab=60.44 E-value=44 Score=33.64 Aligned_cols=52 Identities=19% Similarity=0.205 Sum_probs=34.1
Q ss_pred HHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEeehhc
Q 013861 363 DVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTYF 422 (435)
Q Consensus 363 DIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G~ide~~~v~Esl~~ikRAGAd~IiTYf 422 (435)
++++++++ .+++|.+|-|..|+.-+- +|...-..|.+..+.+.|.|.|||-|
T Consensus 257 ~~v~~a~~-~gl~v~~wTvn~~~~~~~-------~~~~~~~~~~~~~l~~~GVdgiiTD~ 308 (309)
T cd08602 257 DLVEDAHA-AGLQVHPYTFRNENTFLP-------PDFFGDPYAEYRAFLDAGVDGLFTDF 308 (309)
T ss_pred HHHHHHHH-cCCEEEEEEecCCCcccC-------cccCCCHHHHHHHHHHhCCCEEeCCC
Confidence 77777665 599999999986642221 22222233445556668999999965
No 200
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=60.24 E-value=24 Score=38.65 Aligned_cols=115 Identities=11% Similarity=0.184 Sum_probs=71.0
Q ss_pred CCceeechhhhhcccccccchhhhcCCCCCCCccccCCCCCCHHHHHHHHHh-cccccccEEecccCCCcccCCCchHHH
Q 013861 286 QHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQA-DESEGADILLFSVLGSQVKPGLPYLDV 364 (435)
Q Consensus 286 ~~v~IMSYSaKyASafYGPFRdA~~Sap~fgDRktYQmdp~N~~EAlre~~~-D~~EGADilM~~~~~~~VKPal~YLDI 364 (435)
..+-.+|||- +..-||+.+ |.|+++-..-.=..-.++++..+.. =..+|+|+|+ =....-..
T Consensus 15 p~~~~~~~~~-----l~~~~~~i~---~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~dviI---------srG~ta~~ 77 (538)
T PRK15424 15 PVIWTVSVSR-----LFELFRDIS---LEFDHLANITPIQLGFEKAVTYIRKRLATERCDAII---------AAGSNGAY 77 (538)
T ss_pred CeEEEeeHHH-----HHHHHHHHH---HhcCCCceEEehhhhHHHHHHHHHHHHhhCCCcEEE---------ECchHHHH
Confidence 4566678754 667777777 5555555444334577888888843 4468999999 22334444
Q ss_pred HHHHHhhCCCCeEEEEechHHHHHHHHHHCCC--------------------------------CchhhHHHHHHHHHHH
Q 013861 365 IRLLRDKYPLPIAAYQVSGEYSMIKAGGALKM--------------------------------IDEQRVMMESLMCLRR 412 (435)
Q Consensus 365 Ir~vk~~~~lPvaaYqVSGEYaMikaAa~~G~--------------------------------ide~~~v~Esl~~ikR 412 (435)
|+ +.+++||.--+||| |-++++-..+.- +...+-+-+.+..+|+
T Consensus 78 i~---~~~~iPVv~i~~s~-~Dil~al~~a~~~~~~iavv~~~~~~~~~~~~~~~l~~~i~~~~~~~~~e~~~~v~~lk~ 153 (538)
T PRK15424 78 LK---SRLSVPVILIKPSG-FDVMQALARARKLTSSIGVVTYQETIPALVAFQKTFNLRIEQRSYVTEEDARGQINELKA 153 (538)
T ss_pred HH---hhCCCCEEEecCCH-hHHHHHHHHHHhcCCcEEEEecCcccHHHHHHHHHhCCceEEEEecCHHHHHHHHHHHHH
Confidence 44 35677777777777 344443211111 1223345677888888
Q ss_pred hcccEeehh
Q 013861 413 AGADIILTY 421 (435)
Q Consensus 413 AGAd~IiTY 421 (435)
.|+++||.-
T Consensus 154 ~G~~~vvG~ 162 (538)
T PRK15424 154 NGIEAVVGA 162 (538)
T ss_pred CCCCEEEcC
Confidence 999988854
No 201
>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=60.20 E-value=23 Score=35.78 Aligned_cols=64 Identities=28% Similarity=0.390 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHCC-C--eEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcC---CCeecCCCCCCch
Q 013861 199 VPRTIWLLKDRYP-D--LVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAG---ADVVSPSDMMDGR 272 (435)
Q Consensus 199 v~raIr~iK~~~P-d--l~IitDVcLc~YTshGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AG---ADiVAPSDMMDGr 272 (435)
+.+|++..|+.+| + +.|=+| +-++ ..++|+..+++| +|+| |.|..
T Consensus 170 ~~~A~~~~~~~~p~~~~i~vevd----------------------t~~~---~v~eal~~~~~~~~~~d~I----~lDn~ 220 (302)
T cd01571 170 QVEAWKAFDETYPEDVPRIALID----------------------TFND---EKEEALKAAKALGDKLDGV----RLDTP 220 (302)
T ss_pred HHHHHHHHHHHCCCcCCeEEEEe----------------------ecCc---chHHHHHHHHHhCCCCcEE----EECCC
Confidence 6789999999998 3 233222 1111 235677777775 8888 45544
Q ss_pred ----------HHHHHHHHHHCCCCCceee
Q 013861 273 ----------VGAIRAALDAEGFQHVSIM 291 (435)
Q Consensus 273 ----------VgAIR~aLD~~Gf~~v~IM 291 (435)
+..+|++||+.|+.++-|.
T Consensus 221 ~~~~G~~~~~~~~~~~~l~~~g~~~~~ie 249 (302)
T cd01571 221 SSRRGVFRYLIREVRWALDIRGYKHVKIF 249 (302)
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCeEEE
Confidence 9999999999987666543
No 202
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=59.78 E-value=17 Score=36.94 Aligned_cols=92 Identities=17% Similarity=0.222 Sum_probs=58.0
Q ss_pred cccccchhhhcCCCC-CCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHH----HHh-hCC
Q 013861 300 SFYGPFREALDSNPR-FGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRL----LRD-KYP 373 (435)
Q Consensus 300 afYGPFRdA~~Sap~-fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~----vk~-~~~ 373 (435)
.|||-+.+|+...-. ++..+.-.+...|.+||...+ +.|||+|| +-+-. .+-+++ +|+ +-+
T Consensus 177 ~~~g~i~~av~~~r~~~~~~~~I~VEv~tleea~eA~----~~GaD~I~-------LDn~~--~e~l~~av~~~~~~~~~ 243 (288)
T PRK07428 177 QAAGGIGEAITRIRQRIPYPLTIEVETETLEQVQEAL----EYGADIIM-------LDNMP--VDLMQQAVQLIRQQNPR 243 (288)
T ss_pred HHhCCHHHHHHHHHHhCCCCCEEEEECCCHHHHHHHH----HcCCCEEE-------ECCCC--HHHHHHHHHHHHhcCCC
Confidence 466778888766443 233445778889999988665 58999999 33221 243333 332 224
Q ss_pred CCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEeehhcHH
Q 013861 374 LPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTYFAL 424 (435)
Q Consensus 374 lPvaaYqVSGEYaMikaAa~~G~ide~~~v~Esl~~ikRAGAd~IiTYfA~ 424 (435)
+|+.| .|-|+++ .+..+..+|+|.|-+-..-
T Consensus 244 i~leA---------------sGGIt~~-----ni~~ya~tGvD~Isvgsl~ 274 (288)
T PRK07428 244 VKIEA---------------SGNITLE-----TIRAVAETGVDYISSSAPI 274 (288)
T ss_pred eEEEE---------------ECCCCHH-----HHHHHHHcCCCEEEEchhh
Confidence 56543 4667754 5567788999999875543
No 203
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=59.75 E-value=32 Score=41.03 Aligned_cols=224 Identities=17% Similarity=0.178 Sum_probs=123.6
Q ss_pred hhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecC
Q 013861 156 RHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVRE 235 (435)
Q Consensus 156 ~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTshGHcGIv~e 235 (435)
|+-+..+++++.+.||.-+-+|=- +|+=-=+..+|+.+|+.- ..+-.|+| ||.+ +++.
T Consensus 624 d~vv~~f~~~~~~~GidifrifD~-------------lN~~~n~~~~~~~~~~~g----~~~~~~i~-yt~~----~~d~ 681 (1143)
T TIGR01235 624 DNVVKYFVKQAAQGGIDIFRVFDS-------------LNWVENMRVGMDAVAEAG----KVVEAAIC-YTGD----ILDP 681 (1143)
T ss_pred HHHHHHHHHHHHHcCCCEEEECcc-------------CcCHHHHHHHHHHHHHcC----CEEEEEEE-Eecc----CCCc
Confidence 444667788899999998888743 344344667899998863 35666777 6632 2322
Q ss_pred CCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC--------chHHHHHHHHHHC-C--CCCceeechhhhhccccccc
Q 013861 236 DGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMD--------GRVGAIRAALDAE-G--FQHVSIMSYTAKYASSFYGP 304 (435)
Q Consensus 236 ~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMMD--------GrVgAIR~aLD~~-G--f~~v~IMSYSaKyASafYGP 304 (435)
...+. |++.+.+.|-...++|||+|+-.||.= -.|.+||+.++-- + ++|+.=|+-+.-.+..--|-
T Consensus 682 ~~~~~---~l~y~~~~ak~l~~~Gad~I~ikDt~Gll~P~~~~~Lv~~lk~~~~~pi~~H~Hdt~Gla~an~laA~eaGa 758 (1143)
T TIGR01235 682 ARPKY---DLKYYTNLAVELEKAGAHILGIKDMAGLLKPAAAKLLIKALREKTDLPIHFHTHDTSGIAVASMLAAVEAGV 758 (1143)
T ss_pred CCCCC---CHHHHHHHHHHHHHcCCCEEEECCCcCCcCHHHHHHHHHHHHHhcCCeEEEEECCCCCcHHHHHHHHHHhCC
Confidence 22233 466666666667889999999999974 3466777665210 1 13444344443333333331
Q ss_pred chhhhcCCCC-CCCccccCCCCCCHHHHHHHHHh--cccccccEEecccCCCcccCCCchHHHHHHHHhhCCC-------
Q 013861 305 FREALDSNPR-FGDKKTYQMNPANYREALVEAQA--DESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPL------- 374 (435)
Q Consensus 305 FRdA~~Sap~-fgDRktYQmdp~N~~EAlre~~~--D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~~l------- 374 (435)
|.++++-. ++ -.+.|=+ -|.+..+.. +.+-|-|+-. +...-.|+.=+|..-..|..
T Consensus 759 --d~vD~ai~gl~-G~ts~p~----~e~~v~~L~~~~~~tgidl~~-------l~~is~~~~~vr~~y~~~~~~~~~~~~ 824 (1143)
T TIGR01235 759 --DVVDVAVDSMS-GLTSQPS----LGAIVAALEGSERDPGLNVAW-------IRELSAYWEAVRNLYAAFESDLKGPAS 824 (1143)
T ss_pred --CEEEecchhhc-CCCCCHh----HHHHHHHHHhCCCCCCcCHHH-------HHHHHHHHHHHHHHhhcCCCCCcCCCc
Confidence 33444332 22 2344432 244444444 3445666655 55555554444443333321
Q ss_pred CeEEEEe-chHHHHHHH-HHHCCCCchhhHHHHHHHHHHHhcccEe
Q 013861 375 PIAAYQV-SGEYSMIKA-GGALKMIDEQRVMMESLMCLRRAGADII 418 (435)
Q Consensus 375 PvaaYqV-SGEYaMika-Aa~~G~ide~~~v~Esl~~ikRAGAd~I 418 (435)
=|--||+ =|-|+=++. +.+.|+.|.=.-++|.....++-.-++|
T Consensus 825 ~v~~~~~PGG~~snl~~q~~~~g~~~~~~~v~~~~~~v~~~lG~~~ 870 (1143)
T TIGR01235 825 EVYLHEMPGGQYTNLQFQARSLGLGDRWHEVKQAYREANQMFGDIV 870 (1143)
T ss_pred CeEEecCCCcccchHHHHHHHCCcHhhHHHHHHHHHHHHHHcCCCc
Confidence 1333444 356665554 6678887754455555555555444554
No 204
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=59.74 E-value=44 Score=34.04 Aligned_cols=68 Identities=24% Similarity=0.378 Sum_probs=45.3
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCC
Q 013861 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDG 237 (435)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTshGHcGIv~e~g 237 (435)
...+.++.+++.|++.|.+--. . |.. ..+.+.|+.||+.+|++.|++ |.
T Consensus 94 ~~~~~~~~l~eagv~~I~vd~~--~------G~~-----~~~~~~i~~ik~~~p~v~Vi~----------G~-------- 142 (325)
T cd00381 94 DDKERAEALVEAGVDVIVIDSA--H------GHS-----VYVIEMIKFIKKKYPNVDVIA----------GN-------- 142 (325)
T ss_pred hHHHHHHHHHhcCCCEEEEECC--C------CCc-----HHHHHHHHHHHHHCCCceEEE----------CC--------
Confidence 3578889999999988776221 0 111 235678999999999888775 11
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCeec
Q 013861 238 VIMNDETVHQLCKQAVSQARAGADVVS 264 (435)
Q Consensus 238 ~IdND~Tv~~Lak~Avs~A~AGADiVA 264 (435)
+.+ .++|....++|||+|.
T Consensus 143 -v~t-------~~~A~~l~~aGaD~I~ 161 (325)
T cd00381 143 -VVT-------AEAARDLIDAGADGVK 161 (325)
T ss_pred -CCC-------HHHHHHHHhcCCCEEE
Confidence 111 2345556689999985
No 205
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=59.62 E-value=31 Score=33.31 Aligned_cols=60 Identities=13% Similarity=0.232 Sum_probs=46.9
Q ss_pred HHHHHHHHhhCCCCeE--EEE---echHHHHHHHHHHCCC---------CchhhHHHHHHHHHHHhcccEeehh
Q 013861 362 LDVIRLLRDKYPLPIA--AYQ---VSGEYSMIKAGGALKM---------IDEQRVMMESLMCLRRAGADIILTY 421 (435)
Q Consensus 362 LDIIr~vk~~~~lPva--aYq---VSGEYaMikaAa~~G~---------ide~~~v~Esl~~ikRAGAd~IiTY 421 (435)
+++++.+|+.+++|+. +|- ++|....++.+.+.|+ ++-.+-..|.+..+++.|.+.|+.-
T Consensus 63 ~~~v~~vr~~~~~Pl~lM~y~n~~~~~~~~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~Gl~~~~~v 136 (244)
T PRK13125 63 WPLLEEVRKDVSVPIILMTYLEDYVDSLDNFLNMARDVGADGVLFPDLLIDYPDDLEKYVEIIKNKGLKPVFFT 136 (244)
T ss_pred HHHHHHHhccCCCCEEEEEecchhhhCHHHHHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHHHHcCCCEEEEE
Confidence 6899999988899984 322 8899999999999987 2212345788889999999998754
No 206
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=59.48 E-value=22 Score=35.27 Aligned_cols=57 Identities=19% Similarity=0.275 Sum_probs=41.8
Q ss_pred CceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEE
Q 013861 149 GCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIY 216 (435)
Q Consensus 149 Gv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~Ii 216 (435)
..|+++.+ .++++++++.+.|++.|.|-+-... ..+...+...++.||+.+|++-+.
T Consensus 32 ~~~~ls~e-eI~~~~~~~~~~G~~~i~l~gg~~~----------~~~~~~~~~i~~~Ik~~~~~i~~~ 88 (309)
T TIGR00423 32 DAYVLSLE-EILEKVKEAVAKGATEVCIQGGLNP----------QLDIEYYEELFRAIKQEFPDVHIH 88 (309)
T ss_pred CcccCCHH-HHHHHHHHHHHCCCCEEEEecCCCC----------CCCHHHHHHHHHHHHHHCCCceEE
Confidence 35788986 6999999999999999988642111 011234778999999999876643
No 207
>COG3543 Uncharacterized conserved protein [Function unknown]
Probab=59.25 E-value=7 Score=36.10 Aligned_cols=40 Identities=23% Similarity=0.266 Sum_probs=27.9
Q ss_pred HHHHHHHHHCCCeEEEe---eec-ccCCCCCCcceeecCCCccccHHH
Q 013861 201 RTIWLLKDRYPDLVIYT---DVA-LDPYSSDGHDGIVREDGVIMNDET 244 (435)
Q Consensus 201 raIr~iK~~~Pdl~Iit---DVc-Lc~YTshGHcGIv~e~g~IdND~T 244 (435)
+-++-|| .+|++.|+. |+| -|||.+|+||| + ++.+++|++
T Consensus 31 ~I~~rL~-~ge~i~lV~g~DDIC~~cp~~~~~~C~--~-e~~~~r~r~ 74 (135)
T COG3543 31 AIAERLK-AGEDIKLVDGPDDICVSCPCKIDNHCG--D-ESSVERDRI 74 (135)
T ss_pred HHHHHhh-cCCCeEEEecccchhhcCcCCCCCccc--c-chhHHHHHH
Confidence 3444454 578877665 888 79999999999 2 366666653
No 208
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=59.08 E-value=15 Score=33.29 Aligned_cols=49 Identities=14% Similarity=0.220 Sum_probs=39.9
Q ss_pred cHHHHHHHHHHHHHHHHcCCCeecCCCCCCchH---HHHHHHHHHCCCCCceeec
Q 013861 241 NDETVHQLCKQAVSQARAGADVVSPSDMMDGRV---GAIRAALDAEGFQHVSIMS 292 (435)
Q Consensus 241 ND~Tv~~Lak~Avs~A~AGADiVAPSDMMDGrV---gAIR~aLD~~Gf~~v~IMS 292 (435)
.|-|.+.+.+.|..+ +||+|+=|.||-... ..+.+.|.++|+.++.||-
T Consensus 35 ~~v~~e~~v~aa~~~---~adiVglS~L~t~~~~~~~~~~~~l~~~gl~~v~viv 86 (128)
T cd02072 35 VLSPQEEFIDAAIET---DADAILVSSLYGHGEIDCKGLREKCDEAGLKDILLYV 86 (128)
T ss_pred CCCCHHHHHHHHHHc---CCCEEEEeccccCCHHHHHHHHHHHHHCCCCCCeEEE
Confidence 577888888888655 999999999998875 5566788899997787763
No 209
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=58.41 E-value=56 Score=30.63 Aligned_cols=60 Identities=23% Similarity=0.236 Sum_probs=39.7
Q ss_pred CCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhCCCCeEE
Q 013861 316 GDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAA 378 (435)
Q Consensus 316 gDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~~lPvaa 378 (435)
|+|.+|+-...+..+..++- .+.|||-|.+--|..--.-...-+++|+++++.+++|+..
T Consensus 18 G~~~~~~~~~~dp~~~a~~~---~~~g~~~l~v~dl~~~~~g~~~~~~~i~~i~~~~~~pi~~ 77 (230)
T TIGR00007 18 GDYDKETVYGDDPVEAAKKW---EEEGAERIHVVDLDGAKEGGPVNLPVIKKIVRETGVPVQV 77 (230)
T ss_pred cccCcceEecCCHHHHHHHH---HHcCCCEEEEEeCCccccCCCCcHHHHHHHHHhcCCCEEE
Confidence 66777755444666666554 3688998875444333233344689999999999998854
No 210
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=58.18 E-value=35 Score=33.89 Aligned_cols=70 Identities=20% Similarity=0.230 Sum_probs=47.8
Q ss_pred ccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhC----CCCeEEEEechHHHHHHHHHH
Q 013861 318 KKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKY----PLPIAAYQVSGEYSMIKAGGA 393 (435)
Q Consensus 318 RktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~----~lPvaaYqVSGEYaMikaAa~ 393 (435)
.+---+.+.|..|+.... +.|||+|| +=| .+.+-++++.+.. ++|+.|
T Consensus 181 ~~~I~vev~t~eea~~A~----~~gaD~I~-------ld~--~~~e~l~~~v~~i~~~~~i~i~a--------------- 232 (269)
T cd01568 181 EKKIEVEVETLEEAEEAL----EAGADIIM-------LDN--MSPEELKEAVKLLKGLPRVLLEA--------------- 232 (269)
T ss_pred CCeEEEecCCHHHHHHHH----HcCCCEEE-------ECC--CCHHHHHHHHHHhccCCCeEEEE---------------
Confidence 344677888988877664 46999999 544 3446666655433 456543
Q ss_pred CCCCchhhHHHHHHHHHHHhcccEeeh
Q 013861 394 LKMIDEQRVMMESLMCLRRAGADIILT 420 (435)
Q Consensus 394 ~G~ide~~~v~Esl~~ikRAGAd~IiT 420 (435)
-|-|+. |.+..+..+|||.|-+
T Consensus 233 sGGIt~-----~ni~~~a~~Gad~Isv 254 (269)
T cd01568 233 SGGITL-----ENIRAYAETGVDVIST 254 (269)
T ss_pred ECCCCH-----HHHHHHHHcCCCEEEE
Confidence 456665 4566788999999965
No 211
>cd04725 OMP_decarboxylase_like Orotidine 5'-phosphate decarboxylase (ODCase) is a dimeric enzyme that decarboxylates orotidine 5'-monophosphate (OMP) to form uridine 5'-phosphate (UMP), an essential step in the pyrimidine biosynthetic pathway. In mammals, UMP synthase contains two domains: the orotate phosphoribosyltransferase (OPRTase) domain that catalyzes the transfer of phosphoribosyl 5'-pyrophosphate (PRPP) to orotate to form OMP, and the orotidine-5'-phosphate decarboxylase (ODCase) domain that decarboxylates OMP to form UMP.
Probab=58.14 E-value=24 Score=33.52 Aligned_cols=72 Identities=22% Similarity=0.232 Sum_probs=49.4
Q ss_pred CCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCch-----HHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCC
Q 013861 323 MNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPY-----LDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMI 397 (435)
Q Consensus 323 mdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~Y-----LDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G~i 397 (435)
+|+.+.++|++-+. .+.+-. .+ +|+++++ .++|+.+++.. .||++ ..+.-
T Consensus 5 LD~~~~~~a~~i~~-~~~~~v--~~-------iKvg~~l~~~~g~~~i~~l~~~~-~~i~~--------------DlK~~ 59 (216)
T cd04725 5 LDPPDEEFALALID-ALGPYV--CA-------VKVGLELFEAAGPEIVKELRELG-FLVFL--------------DLKLG 59 (216)
T ss_pred eCCCCHHHHHHHHH-hcCCcc--cE-------EEECHHHHHhcCHHHHHHHHHCC-CcEEE--------------EeecC
Confidence 57888888877554 354443 46 8999876 68899999976 77764 34455
Q ss_pred chhhHHHHHHHHHHHhcccEee
Q 013861 398 DEQRVMMESLMCLRRAGADIIL 419 (435)
Q Consensus 398 de~~~v~Esl~~ikRAGAd~Ii 419 (435)
|--+.+..+...+..+|||++.
T Consensus 60 DIg~tv~~~~~~~~~~gad~~T 81 (216)
T cd04725 60 DIPNTVAAAAEALLGLGADAVT 81 (216)
T ss_pred chHHHHHHHHHHHHhcCCCEEE
Confidence 6556666666666677777754
No 212
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=58.10 E-value=15 Score=32.85 Aligned_cols=48 Identities=29% Similarity=0.410 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHcCCCeecCCCCCCchH---HHHHHHHHHCCCCCceeec
Q 013861 242 DETVHQLCKQAVSQARAGADVVSPSDMMDGRV---GAIRAALDAEGFQHVSIMS 292 (435)
Q Consensus 242 D~Tv~~Lak~Avs~A~AGADiVAPSDMMDGrV---gAIR~aLD~~Gf~~v~IMS 292 (435)
|.|.+..++.|+ +.+||+|.=|.+|.... ..+.++|.+.|..++.||.
T Consensus 39 ~~s~e~~v~aa~---e~~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~viv 89 (132)
T TIGR00640 39 FQTPEEIARQAV---EADVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVV 89 (132)
T ss_pred CCCHHHHHHHHH---HcCCCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEE
Confidence 566777777775 67999999999998655 5566778888987777765
No 213
>PF02219 MTHFR: Methylenetetrahydrofolate reductase; InterPro: IPR003171 This family includes the 5,10-methylenetetrahydrofolate reductase 1.7.99.5 from EC from bacteria and methylenetetrahydrofolate reductase 1.5.1.20 from EC from eukaryotes. The structure for this domain is known [] to be a TIM barrel.; GO: 0004489 methylenetetrahydrofolate reductase (NADPH) activity, 0006555 methionine metabolic process, 0055114 oxidation-reduction process; PDB: 3IJD_B 1B5T_B 3FSU_C 1ZPT_C 2FMO_B 3FST_C 2FMN_C 1ZP3_A 1ZP4_B 1ZRQ_B ....
Probab=58.01 E-value=40 Score=33.26 Aligned_cols=114 Identities=23% Similarity=0.351 Sum_probs=64.7
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcc--cCcCcCCCCCHHHHHHHHHHHCCC-eEEEeeecccCCCCCCcceeec
Q 013861 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPT--GDEAYNDNGLVPRTIWLLKDRYPD-LVIYTDVALDPYSSDGHDGIVR 234 (435)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~--Gs~A~~~~g~v~raIr~iK~~~Pd-l~IitDVcLc~YTshGHcGIv~ 234 (435)
.|.+.+..+.++||+.|++..= |..+... ...-++-+ ....-|+.|++.+.+ ..|- ++..| .||...-
T Consensus 86 ~l~~~L~~~~~~Gi~niL~l~G--D~~~~g~~~~~~~~~~~-~~~~Li~~i~~~~~~~~~i~--va~~P---~~hp~~~- 156 (287)
T PF02219_consen 86 ALQSDLLGAHALGIRNILALTG--DPPKGGDHFAKPVFDFD-YALDLIRLIRQEYGDDFSIG--VAGYP---EGHPEAP- 156 (287)
T ss_dssp HHHHHHHHHHHTT--EEEEESS---TSTTSSS----TTS-S-SHHHHHHHHHHHHGGGSEEE--EEE-T---THHTTCS-
T ss_pred HHHHHHHHHHHcCCCeEEEecC--CCCCCCccccCCCchhH-HHHHHHHHHHHhcCcccccc--cccCC---CCCcccc-
Confidence 5888899999999999998653 3222211 11111111 245678888877665 3332 33334 5666211
Q ss_pred CCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC-chHHHHHHHHHHCCCCCcee
Q 013861 235 EDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMD-GRVGAIRAALDAEGFQHVSI 290 (435)
Q Consensus 235 e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMMD-GrVgAIR~aLD~~Gf~~v~I 290 (435)
+-+.-+++|.+ -.+||||.+=.-=--| ..+....+.+.+.|. +++|
T Consensus 157 -----~~~~~~~~l~~----Ki~aGA~f~iTQ~~fd~~~~~~~~~~~~~~g~-~~pI 203 (287)
T PF02219_consen 157 -----DFEAELKRLKK----KIDAGADFIITQPFFDAEAFERFLDRLREAGI-DVPI 203 (287)
T ss_dssp -----SHHHHHHHHHH----HHHTTESEEEEEE-SSHHHHHHHHHHHHHTTH-TSEE
T ss_pred -----CHHHHHHHHHH----HHHCCCCEEeccccCCHHHHHHHHHHHHHcCC-CCcE
Confidence 12333444433 3589999988777778 566778888888886 5444
No 214
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=57.93 E-value=20 Score=35.79 Aligned_cols=117 Identities=19% Similarity=0.185 Sum_probs=72.1
Q ss_pred cCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCC--------CchHHHHHHHHHHCCCCCceeechhhhhcccccccc
Q 013861 234 REDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMM--------DGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPF 305 (435)
Q Consensus 234 ~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMM--------DGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPF 305 (435)
++||.||- +.++.+.+ -+.++|+|-|.+.+.. +=|...++...+..+ .+++||.-.
T Consensus 20 ~~dg~iD~-~~l~~li~---~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~-~~~pvi~gv----------- 83 (303)
T PRK03620 20 DADGSFDE-AAYREHLE---WLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTA-GRVPVIAGA----------- 83 (303)
T ss_pred CCCCCcCH-HHHHHHHH---HHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhC-CCCcEEEec-----------
Confidence 35677763 34454444 5566899998876642 245666676666654 456666321
Q ss_pred hhhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCch-------HHHHHHHHhhCCCCeEE
Q 013861 306 REALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPY-------LDVIRLLRDKYPLPIAA 378 (435)
Q Consensus 306 RdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~Y-------LDIIr~vk~~~~lPvaa 378 (435)
.. |.+|+++.++.=.+-|||.+| |=|-..| .|-.+.+.+.+++||..
T Consensus 84 ------------------~~-~t~~~i~~~~~a~~~Gadav~-------~~pP~y~~~~~~~i~~~f~~va~~~~lpi~l 137 (303)
T PRK03620 84 ------------------GG-GTAQAIEYAQAAERAGADGIL-------LLPPYLTEAPQEGLAAHVEAVCKSTDLGVIV 137 (303)
T ss_pred ------------------CC-CHHHHHHHHHHHHHhCCCEEE-------ECCCCCCCCCHHHHHHHHHHHHHhCCCCEEE
Confidence 11 556666666655567999998 6554222 44455677788899999
Q ss_pred EEech---HHHHHHHHH
Q 013861 379 YQVSG---EYSMIKAGG 392 (435)
Q Consensus 379 YqVSG---EYaMikaAa 392 (435)
||-+| ....++.-+
T Consensus 138 Yn~~g~~l~~~~l~~L~ 154 (303)
T PRK03620 138 YNRDNAVLTADTLARLA 154 (303)
T ss_pred EcCCCCCCCHHHHHHHH
Confidence 98776 334444433
No 215
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=57.51 E-value=1.7e+02 Score=27.38 Aligned_cols=168 Identities=14% Similarity=0.138 Sum_probs=94.2
Q ss_pred eechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcce
Q 013861 152 RLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDG 231 (435)
Q Consensus 152 r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTshGHcG 231 (435)
+++.+ .++.++.+.+.|+..+.++.. +. . +...+.-...|+.|++.++ +-|+
T Consensus 26 ~~~~d--p~~~a~~~~~~g~d~l~v~dl-~~---~------~~~~~~~~~~i~~i~~~~~-~pv~--------------- 77 (234)
T cd04732 26 VYSDD--PVEVAKKWEEAGAKWLHVVDL-DG---A------KGGEPVNLELIEEIVKAVG-IPVQ--------------- 77 (234)
T ss_pred EECCC--HHHHHHHHHHcCCCEEEEECC-Cc---c------ccCCCCCHHHHHHHHHhcC-CCEE---------------
Confidence 55543 688888899999999998753 21 1 2222333567888877752 2121
Q ss_pred eecCCCccccHHHHHHHHHHHHHHHHcCCCeec-CCCCCCchHHHHHHHHHHCCCCCceeechhhhhcccccccchhhhc
Q 013861 232 IVREDGVIMNDETVHQLCKQAVSQARAGADVVS-PSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALD 310 (435)
Q Consensus 232 Iv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVA-PSDMMDGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRdA~~ 310 (435)
+ +|-|..-+.++.+. ++|||.|. .+.++ .....++++..+-|-+ -.+.|-..|-. .++.
T Consensus 78 -~--~GgI~~~e~~~~~~-------~~Gad~vvigs~~l-~dp~~~~~i~~~~g~~-~i~~sid~~~~-~~~~------- 137 (234)
T cd04732 78 -V--GGGIRSLEDIERLL-------DLGVSRVIIGTAAV-KNPELVKELLKEYGGE-RIVVGLDAKDG-KVAT------- 137 (234)
T ss_pred -E--eCCcCCHHHHHHHH-------HcCCCEEEECchHH-hChHHHHHHHHHcCCc-eEEEEEEeeCC-EEEE-------
Confidence 1 24455545444443 48999875 44443 3455677777665532 22333222221 1110
Q ss_pred CCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCC-CcccCCCchHHHHHHHHhhCCCCeEE
Q 013861 311 SNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLG-SQVKPGLPYLDVIRLLRDKYPLPIAA 378 (435)
Q Consensus 311 Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~-~~VKPal~YLDIIr~vk~~~~lPvaa 378 (435)
. |-++.+ +.+..|.+++.. +-|||.+.+.-+. .+.+.+ +-++.|+++++.+++|+.+
T Consensus 138 --~--~~~~~~---~~~~~~~~~~~~---~~ga~~iii~~~~~~g~~~g-~~~~~i~~i~~~~~ipvi~ 195 (234)
T cd04732 138 --K--GWLETS---EVSLEELAKRFE---ELGVKAIIYTDISRDGTLSG-PNFELYKELAAATGIPVIA 195 (234)
T ss_pred --C--CCeeec---CCCHHHHHHHHH---HcCCCEEEEEeecCCCccCC-CCHHHHHHHHHhcCCCEEE
Confidence 0 111122 234455444442 5789988754332 333444 6799999999999999876
No 216
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=57.49 E-value=25 Score=34.22 Aligned_cols=90 Identities=19% Similarity=0.217 Sum_probs=55.5
Q ss_pred CCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCC
Q 013861 148 PGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSD 227 (435)
Q Consensus 148 PGv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTsh 227 (435)
|...|++.+ .+.+.++++.+.|+..|.| +|..|. ..|+ -+.+.++.||+.+|++ |+. ..-|
T Consensus 135 ~~~~~~~~~-~~~~~~~~~~~~G~~~i~l--------~DT~G~--~~P~-~v~~lv~~l~~~~~~~----~i~---l~~H 195 (268)
T cd07940 135 EDATRTDLD-FLIEVVEAAIEAGATTINI--------PDTVGY--LTPE-EFGELIKKLKENVPNI----KVP---ISVH 195 (268)
T ss_pred ecCCCCCHH-HHHHHHHHHHHcCCCEEEE--------CCCCCC--CCHH-HHHHHHHHHHHhCCCC----cee---EEEE
Confidence 344566765 5888899999999987654 444554 2333 2446788999999874 333 3457
Q ss_pred CcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCC
Q 013861 228 GHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMM 269 (435)
Q Consensus 228 GHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMM 269 (435)
+|+-.= + =..-++.-.++||++|--|-.-
T Consensus 196 ~Hn~~G-----------l--A~An~laAi~aG~~~iD~s~~G 224 (268)
T cd07940 196 CHNDLG-----------L--AVANSLAAVEAGARQVECTING 224 (268)
T ss_pred ecCCcc-----------h--HHHHHHHHHHhCCCEEEEEeec
Confidence 776321 1 1122344457899998555433
No 217
>PRK12999 pyruvate carboxylase; Reviewed
Probab=56.79 E-value=4.3e+02 Score=31.95 Aligned_cols=202 Identities=19% Similarity=0.253 Sum_probs=108.5
Q ss_pred eEEEeeCCCCcccCCCCCceeechhhhHHHHHHHHHHc--CCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHH
Q 013861 132 PLFIHEGEEDTPIGAMPGCYRLGWRHGLVQEVAKARDV--GVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDR 209 (435)
Q Consensus 132 PlFV~eg~~~~~I~sMPGv~r~s~~~~l~~~v~~~~~~--GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~ 209 (435)
++.|+|-.=..- ..-++=.|++.. +.+..++.+-+. |+.++=..|- +.-| -...+..+.+- ..++.|++.
T Consensus 532 ~v~i~DtTlRDg-~Qs~~atr~~~~-d~l~ia~~l~~~~~g~~siE~~gg---atfd--~~~r~l~e~p~-erl~~~r~~ 603 (1146)
T PRK12999 532 RVLLTDTTFRDA-HQSLLATRVRTK-DLLRIAPATARLLPNLFSLEMWGG---ATFD--VAYRFLKEDPW-ERLAELREA 603 (1146)
T ss_pred CcEEEECCcchh-hhccccccCCHH-HHHHHHHHHHHHhCCCCEEEeeCC---cchh--hhccccCCCHH-HHHHHHHHh
Confidence 467776541111 112323477875 589999999999 9999888652 1121 11222233333 478999999
Q ss_pred CCCeEEEe--e-ecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCC---CchHHHHHHHHHHC
Q 013861 210 YPDLVIYT--D-VALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMM---DGRVGAIRAALDAE 283 (435)
Q Consensus 210 ~Pdl~Iit--D-VcLc~YTshGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMM---DGrVgAIR~aLD~~ 283 (435)
.|+..+.. - ..++.|+.. - |.-++..++.| +++|.|++--.|-+ +..-.+|+.+.+ .
T Consensus 604 ~~~~~~q~l~Rg~n~vgy~~y-----------p--~~v~~~~i~~a---~~~Gid~~rifd~lnd~~~~~~~i~~vk~-~ 666 (1146)
T PRK12999 604 APNVLFQMLLRGSNAVGYTNY-----------P--DNVVRAFVREA---AAAGIDVFRIFDSLNWVENMRVAIDAVRE-T 666 (1146)
T ss_pred CCCCeEEEEecccccccccCC-----------C--chHHHHHHHHH---HHcCCCEEEEeccCChHHHHHHHHHHHHH-c
Confidence 99844331 1 224455332 1 11222234443 46699998544433 344444444443 3
Q ss_pred CCCCceeechhhhhcccccccchhhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCchHH
Q 013861 284 GFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLD 363 (435)
Q Consensus 284 Gf~~v~IMSYSaKyASafYGPFRdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLD 363 (435)
|...-.-++|..- .--|+| ..| ++.-.-+-.+++ ++-|||+|-+.-.....+|... -+
T Consensus 667 g~~~~~~i~ytg~----~~d~~~------------~~~--~~~~~~~~a~~l---~~~Ga~~i~ikDt~G~l~P~~~-~~ 724 (1146)
T PRK12999 667 GKIAEAAICYTGD----ILDPAR------------AKY--DLDYYVDLAKEL---EKAGAHILAIKDMAGLLKPAAA-YE 724 (1146)
T ss_pred CCeEEEEEEEEec----CCCCCC------------CCC--CHHHHHHHHHHH---HHcCCCEEEECCccCCCCHHHH-HH
Confidence 5433333445310 111111 112 222223333333 2359999986665666778754 48
Q ss_pred HHHHHHhhCCCCeEEEEe
Q 013861 364 VIRLLRDKYPLPIAAYQV 381 (435)
Q Consensus 364 IIr~vk~~~~lPvaaYqV 381 (435)
+|+.+|+++++|| .+|-
T Consensus 725 lv~~lk~~~~ipi-~~H~ 741 (1146)
T PRK12999 725 LVSALKEEVDLPI-HLHT 741 (1146)
T ss_pred HHHHHHHHcCCeE-EEEe
Confidence 9999999999997 4555
No 218
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=56.76 E-value=63 Score=31.66 Aligned_cols=91 Identities=27% Similarity=0.365 Sum_probs=58.0
Q ss_pred CCCHHHHHHHHHhcccccccEEecccCCCcccCC--------CchHHHHHHHHhhC-CCCeEE-E---------Eec-hH
Q 013861 325 PANYREALVEAQADESEGADILLFSVLGSQVKPG--------LPYLDVIRLLRDKY-PLPIAA-Y---------QVS-GE 384 (435)
Q Consensus 325 p~N~~EAlre~~~D~~EGADilM~~~~~~~VKPa--------l~YLDIIr~vk~~~-~lPvaa-Y---------qVS-GE 384 (435)
..+.+|.++++..=..+|||+|= +.-- -.-+++++.+++.+ ++|+.. | ..| .|
T Consensus 24 ~~~~~e~~~~~~~~~~~~aD~vE-------lRlD~l~~~~~~~~~~~~~~~l~~~~~~~PiI~T~R~~~eGG~~~~~~~~ 96 (253)
T PRK02412 24 GKTLEEVLAEALAISKYDADIIE-------WRADFLEKISDVESVLAAAPAIREKFAGKPLLFTFRTAKEGGEIALSDEE 96 (253)
T ss_pred CCCHHHHHHHHHHHhhcCCCEEE-------EEechhhccCCHHHHHHHHHHHHHhcCCCcEEEEECChhhCCCCCCCHHH
Confidence 45677877777655567999986 3322 11235667777776 589654 2 222 23
Q ss_pred H-HHHHHHHHCC---CCchh-----hHHHHHHHHHHHhcccEeehhc
Q 013861 385 Y-SMIKAGGALK---MIDEQ-----RVMMESLMCLRRAGADIILTYF 422 (435)
Q Consensus 385 Y-aMikaAa~~G---~ide~-----~~v~Esl~~ikRAGAd~IiTYf 422 (435)
| ..++.+...| |+|-+ +.+-+.+...++.|..+|++|+
T Consensus 97 ~~~ll~~~~~~~~~d~vDiEl~~~~~~~~~l~~~~~~~~~kvI~S~H 143 (253)
T PRK02412 97 YLALIKAVIKSGLPDYIDVELFSGKDVVKEMVAFAHEHGVKVVLSYH 143 (253)
T ss_pred HHHHHHHHHhcCCCCEEEEeccCChHHHHHHHHHHHHcCCEEEEeeC
Confidence 4 4567788776 34443 3445555666788999999998
No 219
>PRK08508 biotin synthase; Provisional
Probab=56.66 E-value=52 Score=32.51 Aligned_cols=79 Identities=16% Similarity=0.115 Sum_probs=45.9
Q ss_pred cccC-CCCCCHHHHHHHHHhcccccccEEecccCCCcc-cC-CCchHHHHHHHHhhC-CCCeEEEEechHHHHHHHHHHC
Q 013861 319 KTYQ-MNPANYREALVEAQADESEGADILLFSVLGSQV-KP-GLPYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGAL 394 (435)
Q Consensus 319 ktYQ-mdp~N~~EAlre~~~D~~EGADilM~~~~~~~V-KP-al~YLDIIr~vk~~~-~lPvaaYqVSGEYaMikaAa~~ 394 (435)
+.|. ++|....|..+++ .+.|+.=+.+..-|.-. ++ .--|+|+++.+|+.+ .+.+.+- .
T Consensus 35 ~~y~~~s~eeI~~~a~~a---~~~g~~~~~lv~sg~~~~~~~~e~~~ei~~~ik~~~p~l~i~~s--------------~ 97 (279)
T PRK08508 35 KRYKRKDIEQIVQEAKMA---KANGALGFCLVTSGRGLDDKKLEYVAEAAKAVKKEVPGLHLIAC--------------N 97 (279)
T ss_pred ccccCCCHHHHHHHHHHH---HHCCCCEEEEEeccCCCCcccHHHHHHHHHHHHhhCCCcEEEec--------------C
Confidence 3565 4554444444443 34688766532122211 12 225799999999887 5665432 4
Q ss_pred CCCchhhHHHHHHHHHHHhcccEee
Q 013861 395 KMIDEQRVMMESLMCLRRAGADIIL 419 (435)
Q Consensus 395 G~ide~~~v~Esl~~ikRAGAd~Ii 419 (435)
|+++ -|.|..+|.||+|.+-
T Consensus 98 G~~~-----~e~l~~Lk~aGld~~~ 117 (279)
T PRK08508 98 GTAS-----VEQLKELKKAGIFSYN 117 (279)
T ss_pred CCCC-----HHHHHHHHHcCCCEEc
Confidence 6664 4667778888887654
No 220
>PRK13753 dihydropteroate synthase; Provisional
Probab=56.50 E-value=44 Score=33.98 Aligned_cols=102 Identities=13% Similarity=0.063 Sum_probs=62.3
Q ss_pred CCC-CCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCc-ccCCCch----------HHHHHHHHhhCCCCeEE
Q 013861 311 SNP-RFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQ-VKPGLPY----------LDVIRLLRDKYPLPIAA 378 (435)
Q Consensus 311 Sap-~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~-VKPal~Y----------LDIIr~vk~~~~lPvaa 378 (435)
-+| +|-|--.|+ +.+.|+..++.-+++|||||= +|-+ =.|+-.. +.+|+.+++. ..||..
T Consensus 10 vTPDSFsDGg~~~----~~d~a~~~a~~m~~~GAdIID---IGgeSTrPga~~vs~eeE~~Rv~pvI~~l~~~-~~~ISI 81 (279)
T PRK13753 10 LTEDSFFDESRRL----DPAGAVTAAIEMLRVGSDVVD---VGPAASHPDARPVSPADEIRRIAPLLDALSDQ-MHRVSI 81 (279)
T ss_pred CCCCCCCCCCCCC----CHHHHHHHHHHHHHCCCcEEE---ECCCCCCCCCCcCCHHHHHHHHHHHHHHHHhC-CCcEEE
Confidence 345 476665553 678999999999999999997 3433 3476442 3577777765 466543
Q ss_pred EEechHHHHHHHHHHCCC--Cch-hhH-HHHHHHHHHHhcccEeehhc
Q 013861 379 YQVSGEYSMIKAGGALKM--IDE-QRV-MMESLMCLRRAGADIILTYF 422 (435)
Q Consensus 379 YqVSGEYaMikaAa~~G~--ide-~~~-v~Esl~~ikRAGAd~IiTYf 422 (435)
= +-....+++|.++|. |+. ... --+.+.-+...|+-+||.+.
T Consensus 82 D--T~~~~va~~al~aGadiINDVsg~~d~~~~~vva~~~~~vVlmH~ 127 (279)
T PRK13753 82 D--SFQPETQRYALKRGVGYLNDIQGFPDPALYPDIAEADCRLVVMHS 127 (279)
T ss_pred E--CCCHHHHHHHHHcCCCEEEeCCCCCchHHHHHHHHcCCCEEEEec
Confidence 1 334567777777762 111 111 11222345567888888664
No 221
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=56.41 E-value=23 Score=35.23 Aligned_cols=110 Identities=25% Similarity=0.336 Sum_probs=72.9
Q ss_pred cCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCC--------CCchHHHHHHHHHHCCCCCceeechhhhhcccccccc
Q 013861 234 REDGVIMNDETVHQLCKQAVSQARAGADVVSPSDM--------MDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPF 305 (435)
Q Consensus 234 ~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDM--------MDGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPF 305 (435)
++||.|| .+.++.|.+. +.+.|+|-|.+.+. .|=|..-+|.+.+... .+++||.-..
T Consensus 13 ~~dg~iD-~~~l~~lv~~---~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~-g~~pvi~gv~---------- 77 (294)
T TIGR02313 13 KRNGDID-EEALRELIEF---QIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIA-GRIPFAPGTG---------- 77 (294)
T ss_pred CCCCCcC-HHHHHHHHHH---HHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhC-CCCcEEEECC----------
Confidence 4568876 4445555544 34689998876654 2346777777777654 4677774321
Q ss_pred hhhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCch-------HHHHHHHHhhC-CCCeE
Q 013861 306 REALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPY-------LDVIRLLRDKY-PLPIA 377 (435)
Q Consensus 306 RdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~Y-------LDIIr~vk~~~-~lPva 377 (435)
-.|.+|+++.++.=.+-|||.+| |=|-..| ++=.+.+.+.+ ++||.
T Consensus 78 -------------------~~~t~~ai~~a~~A~~~Gad~v~-------v~pP~y~~~~~~~l~~~f~~ia~a~~~lpv~ 131 (294)
T TIGR02313 78 -------------------ALNHDETLELTKFAEEAGADAAM-------VIVPYYNKPNQEALYDHFAEVADAVPDFPII 131 (294)
T ss_pred -------------------cchHHHHHHHHHHHHHcCCCEEE-------EcCccCCCCCHHHHHHHHHHHHHhccCCCEE
Confidence 23667887777776678999999 6663222 45556777888 89999
Q ss_pred EEEechH
Q 013861 378 AYQVSGE 384 (435)
Q Consensus 378 aYqVSGE 384 (435)
.||.-+-
T Consensus 132 iYn~P~~ 138 (294)
T TIGR02313 132 IYNIPGR 138 (294)
T ss_pred EEeCchh
Confidence 9997553
No 222
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]
Probab=56.13 E-value=18 Score=37.42 Aligned_cols=161 Identities=18% Similarity=0.209 Sum_probs=0.0
Q ss_pred ecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHH----CCCCCceeechhhhhcccc-------
Q 013861 233 VREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDA----EGFQHVSIMSYTAKYASSF------- 301 (435)
Q Consensus 233 v~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMMDGrVgAIR~aLD~----~Gf~~v~IMSYSaKyASaf------- 301 (435)
+..+.++.|.--=+.+.++=-.|.+||||||-..-----++.--+--|.. -++.-+-|===+|+-++.=
T Consensus 40 ~~g~nE~LnlT~Pd~I~~IH~aY~eAGADiIeTNTFgat~i~lady~led~v~~in~~aa~iAR~aA~~~~~~k~rfVaG 119 (311)
T COG0646 40 LKGNNELLNLTKPDVIEAIHRAYIEAGADIIETNTFGATTIKLADYGLEDKVYEINQKAARIARRAADEAGDPKPRFVAG 119 (311)
T ss_pred ccCChHHHhcCCcHHHHHHHHHHHhccCcEEEecCCCcchhhHhhhChHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEE
Q ss_pred -cccchhhhcCCCCCCCccccCCCCCCHHHHHHHHHhccc-ccccEEecccCCCcccCCCchHHHHH------HHHhhCC
Q 013861 302 -YGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADES-EGADILLFSVLGSQVKPGLPYLDVIR------LLRDKYP 373 (435)
Q Consensus 302 -YGPFRdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~-EGADilM~~~~~~~VKPal~YLDIIr------~vk~~~~ 373 (435)
-||.+..+...| | |-+.+.-..|+.+|...=+- +|||+++ --.|-|++. .+++.+.
T Consensus 120 siGPt~k~~~~~~---~---~~v~fd~l~~ay~eq~~~Li~gG~D~iL----------iET~~D~l~~KaA~~a~~~~~~ 183 (311)
T COG0646 120 SIGPTNKTLSISP---D---FAVTFDELVEAYREQVEGLIDGGADLIL----------IETIFDTLNAKAAVFAAREVFE 183 (311)
T ss_pred eccCcCCcCCcCC---c---ccccHHHHHHHHHHHHHHHHhCCCcEEE----------EehhccHHHHHHHHHHHHHHHH
Q ss_pred -----CCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEe
Q 013861 374 -----LPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADII 418 (435)
Q Consensus 374 -----lPvaaYqVSGEYaMikaAa~~G~ide~~~v~Esl~~ikRAGAd~I 418 (435)
|||.+=.- ....|-.-.-+.+-+.+.+++.+|+|+|
T Consensus 184 ~~~~~LPv~~s~T---------i~~sG~tl~Gq~~~a~~~~l~~~~~~~v 224 (311)
T COG0646 184 ELGVRLPVMISGT---------ITDSGRTLSGQTIEAFLNSLEHLGPDAV 224 (311)
T ss_pred hcCCcccEEEEEE---------EecCceecCCCcHHHHHHHhhccCCcEE
No 223
>PRK01261 aroD 3-dehydroquinate dehydratase; Provisional
Probab=56.04 E-value=28 Score=34.10 Aligned_cols=101 Identities=9% Similarity=0.102 Sum_probs=65.3
Q ss_pred CCCCCCHHHHHHHHHhcccccccEEecc--cCCCcccCCCchHHHHHHHHhhCCCC-eEEEEechHHHHHHHHHHC--CC
Q 013861 322 QMNPANYREALVEAQADESEGADILLFS--VLGSQVKPGLPYLDVIRLLRDKYPLP-IAAYQVSGEYSMIKAGGAL--KM 396 (435)
Q Consensus 322 Qmdp~N~~EAlre~~~D~~EGADilM~~--~~~~~VKPal~YLDIIr~vk~~~~lP-vaaYqVSGEYaMikaAa~~--G~ 396 (435)
.+-..|.+|.+.+++.=..+|||+|=+- .+.. .....-.++++.+++. ++| ++.|--..|..+++.+.+. .+
T Consensus 26 pi~~~~~ee~~~~~~~~~~~~aDivE~RlD~l~~--~~~~~~~~~~~~l~~~-~~p~I~T~R~~~~~~~l~~a~~~~~d~ 102 (229)
T PRK01261 26 SIFFKDIKEMKERFKTKVLSDKNLYEIRFDLFHD--HSIESEPEIISALNEM-DIDYIFTYRGVDARKYYETAIDKMPPA 102 (229)
T ss_pred EeCCCCHHHHHHHHHHhhcCCCCEEEEEeeccCC--CChHHHHHHHHHHhhc-CCCEEEEEcCCCHHHHHHHHHhhCCCE
Confidence 4566789999988877777999997411 1111 1222246777777765 655 5778876677888888764 35
Q ss_pred CchhhHHHHHHHHHHHhcccEeehhcHHHH
Q 013861 397 IDEQRVMMESLMCLRRAGADIILTYFALQA 426 (435)
Q Consensus 397 ide~~~v~Esl~~ikRAGAd~IiTYfA~~~ 426 (435)
+|-+--.+..+ ..++.|..+|++|+++..
T Consensus 103 vDIEl~~~~~~-~~~~~~~kvIvS~Htp~~ 131 (229)
T PRK01261 103 VDLDINLIGKL-EFRPRNTMLMVSYHTNNS 131 (229)
T ss_pred EEEEcccchhh-hhhcCCCeEEEEeCCCCH
Confidence 56542111223 346789999999998743
No 224
>PRK07360 FO synthase subunit 2; Reviewed
Probab=55.97 E-value=65 Score=33.19 Aligned_cols=99 Identities=23% Similarity=0.396 Sum_probs=63.9
Q ss_pred cccccchhhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCc----hHHHHHHHHhhCC-C
Q 013861 300 SFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLP----YLDVIRLLRDKYP-L 374 (435)
Q Consensus 300 afYGPFRdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~----YLDIIr~vk~~~~-l 374 (435)
|.|-.|+.- + ++.+.|.|++ +|.+..+..=.+.|+.-+.+. -| ..|... |+|+|+.+|+.++ +
T Consensus 74 C~fC~~~~~----~--~~~~~y~ls~---eeI~~~a~~a~~~G~~~i~l~-~G--~~p~~~~~e~~~~~i~~ik~~~~~i 141 (371)
T PRK07360 74 CGFCAFRRD----E--GDHGAFWLTI---AEILEKAAEAVKRGATEVCIQ-GG--LHPAADSLEFYLEILEAIKEEFPDI 141 (371)
T ss_pred CccCCcccC----C--CCCCCeeCCH---HHHHHHHHHHHhCCCCEEEEc-cC--CCCCCCcHHHHHHHHHHHHHhCCCc
Confidence 566666532 1 3567788865 555555555556788876633 34 566665 8999999999773 6
Q ss_pred CeEEEEech-HHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEee
Q 013861 375 PIAAYQVSG-EYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIIL 419 (435)
Q Consensus 375 PvaaYqVSG-EYaMikaAa~~G~ide~~~v~Esl~~ikRAGAd~Ii 419 (435)
-+.++ |. |+..+ +-..|..+ -|.+..+|.||.|.+.
T Consensus 142 ~i~a~--s~~ei~~~--~~~~G~~~-----~e~l~~LkeAGld~~~ 178 (371)
T PRK07360 142 HLHAF--SPMEVYFA--AREDGLSY-----EEVLKALKDAGLDSMP 178 (371)
T ss_pred ceeeC--CHHHHHHH--HhhcCCCH-----HHHHHHHHHcCCCcCC
Confidence 66655 44 44443 23455433 5788899999999985
No 225
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=55.86 E-value=22 Score=35.44 Aligned_cols=82 Identities=17% Similarity=0.168 Sum_probs=53.6
Q ss_pred eechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcce
Q 013861 152 RLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDG 231 (435)
Q Consensus 152 r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTshGHcG 231 (435)
|.+.+ .+++.++++.+.|++.|-| +|..|.. +|. -+.+.++.+|+++|++ +..-|+|+-
T Consensus 143 r~~~~-~~~~~~~~~~~~G~~~i~l--------~DT~G~~--~P~-~v~~l~~~l~~~~~~~---------~i~~H~Hnd 201 (280)
T cd07945 143 RDSPD-YVFQLVDFLSDLPIKRIML--------PDTLGIL--SPF-ETYTYISDMVKRYPNL---------HFDFHAHND 201 (280)
T ss_pred cCCHH-HHHHHHHHHHHcCCCEEEe--------cCCCCCC--CHH-HHHHHHHHHHhhCCCC---------eEEEEeCCC
Confidence 77775 5889999999999998655 2334432 222 2667888999988874 345587863
Q ss_pred eecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCC
Q 013861 232 IVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSD 267 (435)
Q Consensus 232 Iv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSD 267 (435)
. | .=..-++.-.++|||+|--|=
T Consensus 202 ~----G---------la~AN~laA~~aGa~~vd~s~ 224 (280)
T cd07945 202 Y----D---------LAVANVLAAVKAGIKGLHTTV 224 (280)
T ss_pred C----C---------HHHHHHHHHHHhCCCEEEEec
Confidence 3 1 112235566789999876443
No 226
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=55.85 E-value=1.5e+02 Score=32.44 Aligned_cols=43 Identities=19% Similarity=0.127 Sum_probs=32.1
Q ss_pred ecccCCCCCCcc--e-eecCCCccccHHHHHHHHHHHHHHHHcCCCeec
Q 013861 219 VALDPYSSDGHD--G-IVREDGVIMNDETVHQLCKQAVSQARAGADVVS 264 (435)
Q Consensus 219 VcLc~YTshGHc--G-Iv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVA 264 (435)
..+|...--+|. = |+ +.|.+-..++.+.++|..+.++|||||=
T Consensus 138 ~~i~~~~i~~~~p~~~v~---aEI~~a~~l~~i~~~A~~~~~~GADIID 183 (499)
T TIGR00284 138 FRIGSLKIPLKPPPLRVV---AEIPPTVAEDGIEGLAARMERDGADMVA 183 (499)
T ss_pred hhccCcCCCCCCCCeEEE---EEEcCCcchHHHHHHHHHHHHCCCCEEE
Confidence 445566566664 1 44 5677777788899999999999999983
No 227
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=55.81 E-value=22 Score=35.89 Aligned_cols=88 Identities=16% Similarity=0.153 Sum_probs=53.5
Q ss_pred cchhhhcCCCCC-CCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhC-CCCeEEEEe
Q 013861 304 PFREALDSNPRF-GDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKY-PLPIAAYQV 381 (435)
Q Consensus 304 PFRdA~~Sap~f-gDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~-~lPvaaYqV 381 (435)
-+++|+...-++ ..+ .-++...|.+||...+ +.|||+|| .- .+..=|+.+.++..- .-|=..-.+
T Consensus 174 ~i~~av~~~r~~~~~~-kIeVEv~tleea~ea~----~~GaDiI~-------lD-n~~~e~l~~~v~~l~~~~~~~~lea 240 (277)
T TIGR01334 174 DWGGAIGRLKQTAPER-KITVEADTIEQALTVL----QASPDILQ-------LD-KFTPQQLHHLHERLKFFDHIPTLAA 240 (277)
T ss_pred cHHHHHHHHHHhCCCC-CEEEECCCHHHHHHHH----HcCcCEEE-------EC-CCCHHHHHHHHHHHhccCCCEEEEE
Confidence 566666554432 233 3788888888876654 57999999 43 455555555444321 112223344
Q ss_pred chHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEeehh
Q 013861 382 SGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTY 421 (435)
Q Consensus 382 SGEYaMikaAa~~G~ide~~~v~Esl~~ikRAGAd~IiTY 421 (435)
.|-|++ |.+..+...|+|+|+|-
T Consensus 241 ------------sGGI~~-----~ni~~ya~~GvD~is~g 263 (277)
T TIGR01334 241 ------------AGGINP-----ENIADYIEAGIDLFITS 263 (277)
T ss_pred ------------ECCCCH-----HHHHHHHhcCCCEEEeC
Confidence 455665 45678899999999874
No 228
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=55.64 E-value=24 Score=36.34 Aligned_cols=53 Identities=13% Similarity=0.268 Sum_probs=39.5
Q ss_pred eeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCe
Q 013861 151 YRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDL 213 (435)
Q Consensus 151 ~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl 213 (435)
+.++.+ .++++++.+.+.|++.|.|.|=-+... .+-.-+.++++.||+.+|++
T Consensus 102 ~~ls~e-EI~~~a~~~~~~Gv~~i~lvgGe~p~~---------~~~e~l~~~i~~Ik~~~p~i 154 (371)
T PRK09240 102 KTLDEE-EIEREMAAIKKLGFEHILLLTGEHEAK---------VGVDYIRRALPIAREYFSSV 154 (371)
T ss_pred ccCCHH-HHHHHHHHHHhCCCCEEEEeeCCCCCC---------CCHHHHHHHHHHHHHhCCCc
Confidence 677886 699999999999999997754222211 12246788999999999865
No 229
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=55.51 E-value=23 Score=35.71 Aligned_cols=70 Identities=21% Similarity=0.200 Sum_probs=46.8
Q ss_pred ccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhC--CCCeEEEEechHHHHHHHHHHCCCC
Q 013861 320 TYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKY--PLPIAAYQVSGEYSMIKAGGALKMI 397 (435)
Q Consensus 320 tYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~--~lPvaaYqVSGEYaMikaAa~~G~i 397 (435)
--.+-..|.+|+...+ +.|||+|| .-+ .-.+-++++.+.. ++|+.| .|-|
T Consensus 191 ~I~VEv~tleea~eA~----~~gaD~I~-------LD~--~~~e~l~~~v~~~~~~i~leA---------------sGGI 242 (277)
T PRK05742 191 PVEVEVESLDELRQAL----AAGADIVM-------LDE--LSLDDMREAVRLTAGRAKLEA---------------SGGI 242 (277)
T ss_pred eEEEEeCCHHHHHHHH----HcCCCEEE-------ECC--CCHHHHHHHHHHhCCCCcEEE---------------ECCC
Confidence 3667778877755544 67999999 422 2455666666644 577664 4667
Q ss_pred chhhHHHHHHHHHHHhcccEeehhc
Q 013861 398 DEQRVMMESLMCLRRAGADIILTYF 422 (435)
Q Consensus 398 de~~~v~Esl~~ikRAGAd~IiTYf 422 (435)
+++ .+..+..+|+|.|-+-.
T Consensus 243 t~~-----ni~~~a~tGvD~Isvg~ 262 (277)
T PRK05742 243 NES-----TLRVIAETGVDYISIGA 262 (277)
T ss_pred CHH-----HHHHHHHcCCCEEEECh
Confidence 754 45577889999997644
No 230
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=55.44 E-value=22 Score=35.28 Aligned_cols=96 Identities=16% Similarity=0.139 Sum_probs=52.2
Q ss_pred HHHHHHHHHcCCCeEEEeecCCCC-CCCcccCcCcCCCCCHHHHHHHHHHHCCCeEE-EeeecccCCCCCCcceeecCCC
Q 013861 160 VQEVAKARDVGVNSVVLFPKVPDA-LKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVI-YTDVALDPYSSDGHDGIVREDG 237 (435)
Q Consensus 160 ~~~v~~~~~~GI~sv~LFgvi~~~-~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~I-itDVcLc~YTshGHcGIv~e~g 237 (435)
.+.++.+++.|+..|-+|-.+.+. .+...+..--..-..+.++++..|+..-.+.+ +++.--|||. |
T Consensus 76 ~~dv~~A~~~g~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~~~-----------~ 144 (274)
T cd07938 76 LRGAERALAAGVDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCPYE-----------G 144 (274)
T ss_pred HHHHHHHHHcCcCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCCCC-----------C
Confidence 567899999999999887654431 12222211111112234556666665433222 2222235552 3
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC
Q 013861 238 VIMNDETVHQLCKQAVSQARAGADVVSPSDMMD 270 (435)
Q Consensus 238 ~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMMD 270 (435)
.+ +.+.+.+.+-...++|||.|.-.|+.=
T Consensus 145 ~~----~~~~~~~~~~~~~~~Ga~~i~l~DT~G 173 (274)
T cd07938 145 EV----PPERVAEVAERLLDLGCDEISLGDTIG 173 (274)
T ss_pred CC----CHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 33 244444555555679999999999864
No 231
>cd01942 ribokinase_group_A Ribokinase-like subgroup A. Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=55.41 E-value=23 Score=33.19 Aligned_cols=152 Identities=16% Similarity=0.127 Sum_probs=79.7
Q ss_pred CeEEEeeecccCCCCCCcceeecCCCccccHHHHH-----HHHHHHHHHHHcCCCeecCCCCCCchHH-HHHHHHHHCCC
Q 013861 212 DLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVH-----QLCKQAVSQARAGADVVSPSDMMDGRVG-AIRAALDAEGF 285 (435)
Q Consensus 212 dl~IitDVcLc~YTshGHcGIv~e~g~IdND~Tv~-----~Lak~Avs~A~AGADiVAPSDMMDGrVg-AIR~aLD~~Gf 285 (435)
|++++-++++|.+..--|- . ..|...+-.+.. --...|+..++-|.++.-=+-+-|..-+ .|++.|.++|-
T Consensus 1 ~v~~iG~~~~D~~~~v~~~--p-~~~~~~~~~~~~~~~GG~~~Nva~~l~~lg~~~~~~~~vG~D~~g~~i~~~l~~~gi 77 (279)
T cd01942 1 DVAVVGHLNYDIILKVESF--P-GPFESVLVKDLRREFGGSAGNTAVALAKLGLSPGLVAAVGEDFHGRLYLEELREEGV 77 (279)
T ss_pred CEEEEecceeeeEeecccC--C-CCCceEecceeeecCCcHHHHHHHHHHHcCCCceEEEEecCCcchHHHHHHHHHcCC
Confidence 6889999999987421110 0 011111111111 1244677888899988777777777776 89999999997
Q ss_pred CCceeech-hhhhcccccccchhhhcCCCCCCCccccCCCCCCHHHHHHHH-HhcccccccEEecccCCCcccCCCchHH
Q 013861 286 QHVSIMSY-TAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEA-QADESEGADILLFSVLGSQVKPGLPYLD 363 (435)
Q Consensus 286 ~~v~IMSY-SaKyASafYGPFRdA~~Sap~fgDRktYQmdp~N~~EAlre~-~~D~~EGADilM~~~~~~~VKPal~YLD 363 (435)
.-..|--. ..+...+++- .+ . -|.|..| .+++...+ +... ..+.-+.+|++.++.. ..++.
T Consensus 78 ~~~~~~~~~~~~t~~~~~~--~~---~---~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-------~~~~~ 140 (279)
T cd01942 78 DTSHVRVVDEDSTGVAFIL--TD---G---DDNQIAY-FYPGAMDE-LEPNDEADPDGLADIVHLSSG-------PGLIE 140 (279)
T ss_pred CccceEEcCCCCcceEEEE--Ec---C---CCCEEEE-ecCCcccc-cccCCchhhhcccCEEEeCCc-------hHHHH
Confidence 32222111 1122222322 22 1 1333333 23322111 1110 2344588999995433 25777
Q ss_pred HHHHHHhhCCCCeEEEEechHH
Q 013861 364 VIRLLRDKYPLPIAAYQVSGEY 385 (435)
Q Consensus 364 IIr~vk~~~~lPvaaYqVSGEY 385 (435)
+++.++++ +.|| .+.+++.+
T Consensus 141 ~~~~~~~~-g~~v-~~D~~~~~ 160 (279)
T cd01942 141 LARELAAG-GITV-SFDPGQEL 160 (279)
T ss_pred HHHHHHHc-CCeE-EEcchhhh
Confidence 77777753 6665 35666654
No 232
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=55.27 E-value=68 Score=32.76 Aligned_cols=95 Identities=18% Similarity=0.226 Sum_probs=64.4
Q ss_pred HHHHHHHHHHcCCCeEEEeec---------CCC--CCCCcccCcCcCCCCCHHHHHHHHHHHCC-CeEEEeeecccCCCC
Q 013861 159 LVQEVAKARDVGVNSVVLFPK---------VPD--ALKSPTGDEAYNDNGLVPRTIWLLKDRYP-DLVIYTDVALDPYSS 226 (435)
Q Consensus 159 l~~~v~~~~~~GI~sv~LFgv---------i~~--~~Kd~~Gs~A~~~~g~v~raIr~iK~~~P-dl~IitDVcLc~YTs 226 (435)
.++-++.+.+.|...|-|-+- -|. .-+|+.|..--|.--++...++.||++.+ ++.|..=+..+.|-.
T Consensus 143 f~~AA~ra~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~vg~~~~v~iRl~~~~~~~ 222 (343)
T cd04734 143 FADAARRCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAVGPDFIVGIRISGDEDTE 222 (343)
T ss_pred HHHHHHHHHHcCCCEEEEccccchHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCCeEEEEeehhhccC
Confidence 344455678899999988651 132 24589887766666788889999999984 777777776655522
Q ss_pred CCcceeecCCCccccHHHHHHHHHHHHHHHHcC-CCeecCCC
Q 013861 227 DGHDGIVREDGVIMNDETVHQLCKQAVSQARAG-ADVVSPSD 267 (435)
Q Consensus 227 hGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AG-ADiVAPSD 267 (435)
+| ++-|+++ +.+-.+.++| +|+|.-|.
T Consensus 223 ---------~G-~~~~e~~----~~~~~l~~~G~vd~i~vs~ 250 (343)
T cd04734 223 ---------GG-LSPDEAL----EIAARLAAEGLIDYVNVSA 250 (343)
T ss_pred ---------CC-CCHHHHH----HHHHHHHhcCCCCEEEeCC
Confidence 22 3445665 3455567898 89987753
No 233
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=55.16 E-value=2.1e+02 Score=27.81 Aligned_cols=151 Identities=18% Similarity=0.238 Sum_probs=96.7
Q ss_pred hhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCC
Q 013861 157 HGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVRED 236 (435)
Q Consensus 157 ~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTshGHcGIv~e~ 236 (435)
+.+++.++.+++.||+.+-+ + ++-.+ ...+|+.++++||++.|-+
T Consensus 20 e~a~~~~~al~~~Gi~~iEi----t-----------~~t~~-a~~~i~~l~~~~~~~~vGA------------------- 64 (204)
T TIGR01182 20 DDALPLAKALIEGGLRVLEV----T-----------LRTPV-ALDAIRLLRKEVPDALIGA------------------- 64 (204)
T ss_pred HHHHHHHHHHHHcCCCEEEE----e-----------CCCcc-HHHHHHHHHHHCCCCEEEE-------------------
Confidence 35889999999999998765 1 11112 3458999999999877654
Q ss_pred CccccHHHHHHHHHHHHHHHHcCCCee-cCCCCCCchHHHHHHHHHHCCCCCceeechhhhhcccccccchhhhcCCCCC
Q 013861 237 GVIMNDETVHQLCKQAVSQARAGADVV-SPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRF 315 (435)
Q Consensus 237 g~IdND~Tv~~Lak~Avs~A~AGADiV-APSDMMDGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRdA~~Sap~f 315 (435)
|.|.+-++ +-...+|||+.+ +|. +-+ .+=+...+.|. +.+ |.
T Consensus 65 GTVl~~~~-------a~~a~~aGA~FivsP~-~~~----~v~~~~~~~~i---~~i---------------------PG- 107 (204)
T TIGR01182 65 GTVLNPEQ-------LRQAVDAGAQFIVSPG-LTP----ELAKHAQDHGI---PII---------------------PG- 107 (204)
T ss_pred EeCCCHHH-------HHHHHHcCCCEEECCC-CCH----HHHHHHHHcCC---cEE---------------------CC-
Confidence 44555444 444567999976 443 322 22223334443 111 11
Q ss_pred CCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCch--HHHHHHHHhhCC-CCeEEEEechHHHHHHHHH
Q 013861 316 GDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPY--LDVIRLLRDKYP-LPIAAYQVSGEYSMIKAGG 392 (435)
Q Consensus 316 gDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~Y--LDIIr~vk~~~~-lPvaaYqVSGEYaMikaAa 392 (435)
.....|++... +-|||+|= +=|+..+ .+-|+.+|.=++ +|+.+
T Consensus 108 ---------~~TptEi~~A~----~~Ga~~vK-------lFPA~~~GG~~yikal~~plp~i~~~p-------------- 153 (204)
T TIGR01182 108 ---------VATPSEIMLAL----ELGITALK-------LFPAEVSGGVKMLKALAGPFPQVRFCP-------------- 153 (204)
T ss_pred ---------CCCHHHHHHHH----HCCCCEEE-------ECCchhcCCHHHHHHHhccCCCCcEEe--------------
Confidence 12445555443 56999999 9999877 688999998663 66653
Q ss_pred HCCCCchhhHHHHHHHHHHHhcccEee
Q 013861 393 ALKMIDEQRVMMESLMCLRRAGADIIL 419 (435)
Q Consensus 393 ~~G~ide~~~v~Esl~~ikRAGAd~Ii 419 (435)
-|-++. +.+..+..||+..+-
T Consensus 154 -tGGV~~-----~N~~~~l~aGa~~vg 174 (204)
T TIGR01182 154 -TGGINL-----ANVRDYLAAPNVACG 174 (204)
T ss_pred -cCCCCH-----HHHHHHHhCCCEEEE
Confidence 344555 567788888988754
No 234
>cd03307 Mta_CmuA_like MtaA_CmuA_like family. MtaA/CmuA, also MtsA, or methyltransferase 2 (MT2) MT2-A and MT2-M isozymes, are methylcobamide:Coenzyme M methyltransferases, which play a role in metabolic pathways of methane formation from various substrates, such as methylated amines and methanol. Coenzyme M, 2-mercaptoethylsulfonate or CoM, is methylated during methanogenesis in a reaction catalyzed by three proteins. A methyltransferase methylates the corrinoid cofactor, which is bound to a second polypeptide, a corrinoid protein. The methylated corrinoid protein then serves as a substrate for MT2-A and related enzymes, which methylate CoM.
Probab=55.16 E-value=35 Score=33.92 Aligned_cols=155 Identities=20% Similarity=0.282 Sum_probs=81.2
Q ss_pred CHHHHHHHHHHHCCC-eEEEeeecccCCCCCCcc-e---eecCCCccccHHHHHHHH--------HHHHHHHHcCCCeec
Q 013861 198 LVPRTIWLLKDRYPD-LVIYTDVALDPYSSDGHD-G---IVREDGVIMNDETVHQLC--------KQAVSQARAGADVVS 264 (435)
Q Consensus 198 ~v~raIr~iK~~~Pd-l~IitDVcLc~YTshGHc-G---Iv~e~g~IdND~Tv~~La--------k~Avs~A~AGADiVA 264 (435)
.+-+||+.+|+++++ +-|+. .+-.|||.-.+- | ++. .-..|-+.++.|. +-+..+.++|||+|.
T Consensus 113 ~v~eai~~l~~~~~~~~pvig-~~~gP~Tla~~l~g~~~~~~--~~~~~pe~~~~ll~~it~~~~~~~~~~~eaGad~i~ 189 (326)
T cd03307 113 TVLEAIKILKEKYGEEVPVIG-GMTGPASLASHLAGVENFLK--WLIKKPEKVREFLEFLTEACIEYAKAQLEAGADIIT 189 (326)
T ss_pred HHHHHHHHHHHHcCCcceeeC-CCCCHHHHHHHHHhHHHHHH--HHHHCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEE
Confidence 345899999999984 55554 446788765541 1 110 1223445444433 344567789999997
Q ss_pred CCCCCCch------------HHHHHHHHHHCCCCCceeechhhhhcccccccchhh----h--cCC-------CCCCCcc
Q 013861 265 PSDMMDGR------------VGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREA----L--DSN-------PRFGDKK 319 (435)
Q Consensus 265 PSDMMDGr------------VgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRdA----~--~Sa-------p~fgDRk 319 (435)
-+|..=+. .-.+|+.+|.-.- ..++-|..+..+.++-=+++. + +.. ..+||+.
T Consensus 190 i~d~~a~~~~isp~~f~e~~~p~~k~i~~~i~~--~~~ilh~cG~~~~~l~~~~~~g~d~~~~d~~~dl~e~~~~~g~~~ 267 (326)
T cd03307 190 IADPTASPELISPEFYEEFALPYHKKIVKELHG--CPTILHICGNTTPILEYIAQCGFDGISVDEKVDVKTAKEIVGGRA 267 (326)
T ss_pred ecCCCccccccCHHHHHHHHHHHHHHHHHHHhc--CCcEEEECCCChhHHHHHHHcCCCeecccccCCHHHHHHHcCCce
Confidence 77765433 4566777766521 333335444444444333331 0 111 1124444
Q ss_pred ccC--CCCC------CHHHHHHHHHhcccccccEEecccCCCcccCCCc
Q 013861 320 TYQ--MNPA------NYREALVEAQADESEGADILLFSVLGSQVKPGLP 360 (435)
Q Consensus 320 tYQ--mdp~------N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~ 360 (435)
+-| +||. +.+|...++..-+++|.+|+- +|-.|-|..+
T Consensus 268 ~i~Gnidp~~~l~~gt~e~i~~~~~~~l~~g~~Il~---~Gc~i~~~tp 313 (326)
T cd03307 268 ALIGNVSPSQTLLNGTPEDVKAEARKCLEDGVDILA---PGCGIAPRTP 313 (326)
T ss_pred EEEeCCChHHHhcCCCHHHHHHHHHHHHHccCCEec---CcCCCCCCCC
Confidence 433 3332 334444455555555665554 5666766655
No 235
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=54.81 E-value=86 Score=30.78 Aligned_cols=110 Identities=13% Similarity=0.172 Sum_probs=61.2
Q ss_pred eechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHC-CCeEEEeeecccCCCCCCcc
Q 013861 152 RLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRY-PDLVIYTDVALDPYSSDGHD 230 (435)
Q Consensus 152 r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~-Pdl~IitDVcLc~YTshGHc 230 (435)
++.++ .+.+.++.+++.|++.+.+.|.. |+..+=..-=-.+.++...+.. .++-||+=|
T Consensus 15 ~iD~~-~~~~~i~~l~~~Gv~Gi~~~Gst--------GE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv----------- 74 (285)
T TIGR00674 15 SVDFA-ALEKLIDFQIENGTDAIVVVGTT--------GESPTLSHEEHKKVIEFVVDLVNGRVPVIAGT----------- 74 (285)
T ss_pred CcCHH-HHHHHHHHHHHcCCCEEEECccC--------cccccCCHHHHHHHHHHHHHHhCCCCeEEEeC-----------
Confidence 34554 58899999999999999998863 2222211111223344333332 234444322
Q ss_pred eeecCCCccccHHHHHHHHHHHHHHHHcCCCeec---CCCCC---CchHHHHHHHHHHCCCCCceeechh
Q 013861 231 GIVREDGVIMNDETVHQLCKQAVSQARAGADVVS---PSDMM---DGRVGAIRAALDAEGFQHVSIMSYT 294 (435)
Q Consensus 231 GIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVA---PSDMM---DGrVgAIR~aLD~~Gf~~v~IMSYS 294 (435)
...|.+...++|-..+++|||.|. |.--- |+-+...++..|.. +++|+=|-
T Consensus 75 ----------~~~s~~~~i~~a~~a~~~Gad~v~v~pP~y~~~~~~~i~~~~~~i~~~~---~~pi~lYn 131 (285)
T TIGR00674 75 ----------GSNATEEAISLTKFAEDVGADGFLVVTPYYNKPTQEGLYQHFKAIAEEV---DLPIILYN 131 (285)
T ss_pred ----------CCccHHHHHHHHHHHHHcCCCEEEEcCCcCCCCCHHHHHHHHHHHHhcC---CCCEEEEE
Confidence 122244455566666889999542 32111 56666666666553 57888773
No 236
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=54.73 E-value=49 Score=34.85 Aligned_cols=67 Identities=15% Similarity=0.208 Sum_probs=44.8
Q ss_pred hHHHHHHHHHHc--CCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecC
Q 013861 158 GLVQEVAKARDV--GVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVRE 235 (435)
Q Consensus 158 ~l~~~v~~~~~~--GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTshGHcGIv~e 235 (435)
.-.+.+++++++ |+..+.| +-+ ...+-.+.++|+.||+.||++.||+
T Consensus 108 ~d~er~~~L~~~~~g~D~ivi----D~A---------hGhs~~~i~~ik~ik~~~P~~~vIa------------------ 156 (346)
T PRK05096 108 ADFEKTKQILALSPALNFICI----DVA---------NGYSEHFVQFVAKAREAWPDKTICA------------------ 156 (346)
T ss_pred HHHHHHHHHHhcCCCCCEEEE----ECC---------CCcHHHHHHHHHHHHHhCCCCcEEE------------------
Confidence 346778888884 7777665 111 2223457789999999999988874
Q ss_pred CCccccHHHHHHHHHHHHHHHHcCCCee
Q 013861 236 DGVIMNDETVHQLCKQAVSQARAGADVV 263 (435)
Q Consensus 236 ~g~IdND~Tv~~Lak~Avs~A~AGADiV 263 (435)
|-|-. .++|..+.+||||+|
T Consensus 157 -GNV~T-------~e~a~~Li~aGAD~v 176 (346)
T PRK05096 157 -GNVVT-------GEMVEELILSGADIV 176 (346)
T ss_pred -ecccC-------HHHHHHHHHcCCCEE
Confidence 22222 345566778999998
No 237
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=54.60 E-value=49 Score=33.76 Aligned_cols=75 Identities=13% Similarity=0.216 Sum_probs=48.3
Q ss_pred HHHHHhcccccccEEecccCCCcccCCC-------chHHHHHHHHhhCC-----CCeEEEEechHHHHHHHHHHCCCCch
Q 013861 332 LVEAQADESEGADILLFSVLGSQVKPGL-------PYLDVIRLLRDKYP-----LPIAAYQVSGEYSMIKAGGALKMIDE 399 (435)
Q Consensus 332 lre~~~D~~EGADilM~~~~~~~VKPal-------~YLDIIr~vk~~~~-----lPvaaYqVSGEYaMikaAa~~G~ide 399 (435)
..+....++++||.|.+.+ ++...++. .+.+|++.+|+..+ +||.+= +|- ++ +.
T Consensus 159 ~~~~~~~~~~~ad~lelN~-scP~~~g~~~~~~~~~~~eiv~aVr~~~~~~~~~~PV~vK-lsp-----------~~-~~ 224 (344)
T PRK05286 159 YLICLEKLYPYADYFTVNI-SSPNTPGLRDLQYGEALDELLAALKEAQAELHGYVPLLVK-IAP-----------DL-SD 224 (344)
T ss_pred HHHHHHHHHhhCCEEEEEc-cCCCCCCcccccCHHHHHHHHHHHHHHHhccccCCceEEE-eCC-----------CC-CH
Confidence 3344444567899999665 33322222 35799999999886 998752 221 12 22
Q ss_pred hhHHHHHHHHHHHhcccEeehh
Q 013861 400 QRVMMESLMCLRRAGADIILTY 421 (435)
Q Consensus 400 ~~~v~Esl~~ikRAGAd~IiTY 421 (435)
+ -+.|....+..+|||.|+..
T Consensus 225 ~-~~~~ia~~l~~~Gadgi~~~ 245 (344)
T PRK05286 225 E-ELDDIADLALEHGIDGVIAT 245 (344)
T ss_pred H-HHHHHHHHHHHhCCcEEEEe
Confidence 2 36778888889999988754
No 238
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=54.47 E-value=67 Score=29.76 Aligned_cols=85 Identities=27% Similarity=0.345 Sum_probs=51.8
Q ss_pred cccCCCCCCHHHHHHHHHhcccc-cccEEecccCCC-------------cccCCCchHHHHHHHHhhCCCCeEEEEechH
Q 013861 319 KTYQMNPANYREALVEAQADESE-GADILLFSVLGS-------------QVKPGLPYLDVIRLLRDKYPLPIAAYQVSGE 384 (435)
Q Consensus 319 ktYQmdp~N~~EAlre~~~D~~E-GADilM~~~~~~-------------~VKPal~YLDIIr~vk~~~~lPvaaYqVSGE 384 (435)
-..|+--.+. +.+.++..-+++ |+|.|=+.. |. ..+=--.-.+||+.+++..++|+.+-- +
T Consensus 57 ~~~qi~g~~~-~~~~~aa~~~~~aG~d~ieln~-g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk~-r-- 131 (231)
T cd02801 57 LIVQLGGSDP-ETLAEAAKIVEELGADGIDLNM-GCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKI-R-- 131 (231)
T ss_pred EEEEEcCCCH-HHHHHHHHHHHhcCCCEEEEeC-CCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEEEE-e--
Confidence 3466654344 445666666666 999997211 11 000111347999999998888887632 1
Q ss_pred HHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEe
Q 013861 385 YSMIKAGGALKMIDEQRVMMESLMCLRRAGADII 418 (435)
Q Consensus 385 YaMikaAa~~G~ide~~~v~Esl~~ikRAGAd~I 418 (435)
.||-++ .-..|.+..+..+|+|.|
T Consensus 132 ---------~~~~~~-~~~~~~~~~l~~~Gvd~i 155 (231)
T cd02801 132 ---------LGWDDE-EETLELAKALEDAGASAL 155 (231)
T ss_pred ---------eccCCc-hHHHHHHHHHHHhCCCEE
Confidence 345433 345677777788899887
No 239
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=54.06 E-value=24 Score=34.03 Aligned_cols=55 Identities=20% Similarity=0.357 Sum_probs=41.8
Q ss_pred CcccCCCCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEe
Q 013861 141 DTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYT 217 (435)
Q Consensus 141 ~~~I~sMPGv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~Iit 217 (435)
...|..+||++ -..|+..++++|.+-|-|||- +. .|. +.-|+.||.-||++-++.
T Consensus 95 ~~~i~~iPG~~-------TptEi~~A~~~Ga~~vK~FPa--~~----~GG---------~~yikal~~plp~~~l~p 149 (201)
T PRK06015 95 DSDVPLLPGAA-------TPSEVMALREEGYTVLKFFPA--EQ----AGG---------AAFLKALSSPLAGTFFCP 149 (201)
T ss_pred HcCCCEeCCCC-------CHHHHHHHHHCCCCEEEECCc--hh----hCC---------HHHHHHHHhhCCCCcEEe
Confidence 35889999992 467899999999999999994 11 110 356899999999876653
No 240
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=54.02 E-value=1.9e+02 Score=27.10 Aligned_cols=108 Identities=19% Similarity=0.328 Sum_probs=56.6
Q ss_pred CCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCCCceeechhhhhcccccccchhhhcCCCC
Q 013861 235 EDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPR 314 (435)
Q Consensus 235 e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMMDGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRdA~~Sap~ 314 (435)
..|-+.+.+++..++ ..+.++|+..+. | |....++..= ++ .+++|+. +||.-.+.
T Consensus 19 ~~~~~~~~~~i~~~a---~~~~~~G~~~~~----~-~~~~~~~~i~-~~--~~iPil~-----------~~~~~~~~--- 73 (219)
T cd04729 19 PGEPLHSPEIMAAMA---LAAVQGGAVGIR----A-NGVEDIRAIR-AR--VDLPIIG-----------LIKRDYPD--- 73 (219)
T ss_pred CCCCcCcHHHHHHHH---HHHHHCCCeEEE----c-CCHHHHHHHH-Hh--CCCCEEE-----------EEecCCCC---
Confidence 346666666665554 456789998876 2 3333333331 11 4777765 44422210
Q ss_pred CCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcc-cCC-CchHHHHHHHHhhCCCCeEE
Q 013861 315 FGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQV-KPG-LPYLDVIRLLRDKYPLPIAA 378 (435)
Q Consensus 315 fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~V-KPa-l~YLDIIr~vk~~~~lPvaa 378 (435)
...-+++ +. + +++.=.+.|||+|... .+.. .|. ..-.++++.+++..++|+.+
T Consensus 74 ----~~~~ig~-~~-~---~~~~a~~aGad~I~~~--~~~~~~p~~~~~~~~i~~~~~~g~~~iiv 128 (219)
T cd04729 74 ----SEVYITP-TI-E---EVDALAAAGADIIALD--ATDRPRPDGETLAELIKRIHEEYNCLLMA 128 (219)
T ss_pred ----CCceeCC-CH-H---HHHHHHHcCCCEEEEe--CCCCCCCCCcCHHHHHHHHHHHhCCeEEE
Confidence 0111232 22 2 2222236799988711 1111 143 35678999998877788765
No 241
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=53.88 E-value=30 Score=34.01 Aligned_cols=58 Identities=26% Similarity=0.408 Sum_probs=40.0
Q ss_pred ccccccEEecccCCCcccCCC--chHHHHHHHHhhCC-CCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcc
Q 013861 339 ESEGADILLFSVLGSQVKPGL--PYLDVIRLLRDKYP-LPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGA 415 (435)
Q Consensus 339 ~~EGADilM~~~~~~~VKPal--~YLDIIr~vk~~~~-lPvaaYqVSGEYaMikaAa~~G~ide~~~v~Esl~~ikRAGA 415 (435)
++.|||.|.. .|-+|+. +=++.|+++++.++ +||.+ +|=+..-+-+.|.|. +||
T Consensus 158 ~~aGad~i~V----d~~~~g~~~a~~~~I~~i~~~~~~ipIIg---------------NGgI~s~eda~e~l~----~GA 214 (231)
T TIGR00736 158 VDDGFDGIHV----DAMYPGKPYADMDLLKILSEEFNDKIIIG---------------NNSIDDIESAKEMLK----AGA 214 (231)
T ss_pred HHcCCCEEEE----eeCCCCCchhhHHHHHHHHHhcCCCcEEE---------------ECCcCCHHHHHHHHH----hCC
Confidence 3789999983 2456665 34889999999985 99876 333433334456553 699
Q ss_pred cEee
Q 013861 416 DIIL 419 (435)
Q Consensus 416 d~Ii 419 (435)
|.|-
T Consensus 215 d~Vm 218 (231)
T TIGR00736 215 DFVS 218 (231)
T ss_pred CeEE
Confidence 9874
No 242
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=53.75 E-value=70 Score=33.19 Aligned_cols=109 Identities=15% Similarity=0.143 Sum_probs=66.9
Q ss_pred HHHHHHHHHcCCCeEEEee----cC--------CCCCCCcccCcCcCCCCCHHHHHHHHHHHCC-CeEEEeeecccCCCC
Q 013861 160 VQEVAKARDVGVNSVVLFP----KV--------PDALKSPTGDEAYNDNGLVPRTIWLLKDRYP-DLVIYTDVALDPYSS 226 (435)
Q Consensus 160 ~~~v~~~~~~GI~sv~LFg----vi--------~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~P-dl~IitDVcLc~YTs 226 (435)
.+-.+.+.+.|...|-|.+ -+ -+.-.|+.|..--|.--++-+.|+.||+++| |..|..=++.+.|..
T Consensus 153 ~~AA~ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf~~eii~~vr~~~g~~f~v~vri~~~~~~~ 232 (382)
T cd02931 153 GESAVIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIKARCGEDFPVSLRYSVKSYIK 232 (382)
T ss_pred HHHHHHHHHcCCCEEEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHhcCCCceEEEEEechhhcc
Confidence 3344456789999998864 11 2345688887666777788899999999996 667766666555522
Q ss_pred CCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCC
Q 013861 227 DGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDM 268 (435)
Q Consensus 227 hGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDM 268 (435)
....+-...+...+.-.|++...+.+-...++|+|.|..|.-
T Consensus 233 ~~~~~~~~~~~~~~~g~~~e~~~~~~~~l~~~gvD~l~vs~g 274 (382)
T cd02931 233 DLRQGALPGEEFQEKGRDLEEGLKAAKILEEAGYDALDVDAG 274 (382)
T ss_pred ccccccccccccccCCCCHHHHHHHHHHHHHhCCCEEEeCCC
Confidence 111110000001112234444455566668899999988853
No 243
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=53.72 E-value=2e+02 Score=27.27 Aligned_cols=167 Identities=20% Similarity=0.220 Sum_probs=92.6
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCC
Q 013861 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDG 237 (435)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTshGHcGIv~e~g 237 (435)
+..+.++.+.+.|+..+.++.. .. +..+ .+.-...|+.|++... +-| + -+|
T Consensus 28 d~~~~a~~~~~~G~~~i~i~d~-~~---~~~~------~~~~~~~i~~i~~~~~-~pv-----------------~-~~G 78 (243)
T cd04731 28 DPVELAKRYNEQGADELVFLDI-TA---SSEG------RETMLDVVERVAEEVF-IPL-----------------T-VGG 78 (243)
T ss_pred CHHHHHHHHHHCCCCEEEEEcC-Cc---cccc------CcccHHHHHHHHHhCC-CCE-----------------E-EeC
Confidence 3688888999999999999885 21 2111 2455678888888752 212 1 136
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCCCceeechhhhhccccccc---chhhhcCCCC
Q 013861 238 VIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGP---FREALDSNPR 314 (435)
Q Consensus 238 ~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMMDGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGP---FRdA~~Sap~ 314 (435)
-|.+-+.++.+.+ .|||.|.=.-..-..-..+++.++.-| .+-.+.|=.+| .++ ++=+.
T Consensus 79 GI~s~~d~~~~l~-------~G~~~v~ig~~~~~~p~~~~~i~~~~~-~~~i~~~ld~k-----~~~~~~~~v~~----- 140 (243)
T cd04731 79 GIRSLEDARRLLR-------AGADKVSINSAAVENPELIREIAKRFG-SQCVVVSIDAK-----RRGDGGYEVYT----- 140 (243)
T ss_pred CCCCHHHHHHHHH-------cCCceEEECchhhhChHHHHHHHHHcC-CCCEEEEEEee-----ecCCCceEEEE-----
Confidence 6666666666544 588876544333333345555555432 12223333222 011 00001
Q ss_pred CCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCc-ccCCCchHHHHHHHHhhCCCCeEE
Q 013861 315 FGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQ-VKPGLPYLDVIRLLRDKYPLPIAA 378 (435)
Q Consensus 315 fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~-VKPal~YLDIIr~vk~~~~lPvaa 378 (435)
|-.+....-+..+-.+++ .+.|+|.|.++-.... -+++ +.++.++++++..++||.+
T Consensus 141 ---~~~~~~~~~~~~~~~~~l---~~~G~d~i~v~~i~~~g~~~g-~~~~~i~~i~~~~~~pvia 198 (243)
T cd04731 141 ---HGGRKPTGLDAVEWAKEV---EELGAGEILLTSMDRDGTKKG-YDLELIRAVSSAVNIPVIA 198 (243)
T ss_pred ---cCCceecCCCHHHHHHHH---HHCCCCEEEEeccCCCCCCCC-CCHHHHHHHHhhCCCCEEE
Confidence 111222222333333333 3679998885444321 1333 6899999999999999876
No 244
>PLN00191 enolase
Probab=53.70 E-value=52 Score=35.50 Aligned_cols=125 Identities=15% Similarity=0.191 Sum_probs=79.5
Q ss_pred HHHHHHHHHHCCCC-Cceeechhhhh-cccccccchhhhcCCCCCCCccccCCCC----------CCHHHHHHHHHhccc
Q 013861 273 VGAIRAALDAEGFQ-HVSIMSYTAKY-ASSFYGPFREALDSNPRFGDKKTYQMNP----------ANYREALVEAQADES 340 (435)
Q Consensus 273 VgAIR~aLD~~Gf~-~v~IMSYSaKy-ASafYGPFRdA~~Sap~fgDRktYQmdp----------~N~~EAlre~~~D~~ 340 (435)
+..|++|.++.||+ +|.|. --. ||.||.. ...|.++. -+..| +.+...++.
T Consensus 246 l~ll~eAi~~ag~~~~i~i~---lD~Aase~~~~-------------~~~Y~~~~~~~~~~~~~~~s~~e-~i~~~~~L~ 308 (457)
T PLN00191 246 LELLKEAIEKAGYTGKIKIG---MDVAASEFYTK-------------DKKYDLDFKEENNDGSNKKSGDE-LIDLYKEFV 308 (457)
T ss_pred HHHHHHHHHHcCCCCceEEE---eehhhhhhccc-------------CCceEeeccccCCCcccccCHHH-HHHHHHHHh
Confidence 56788889999996 44443 333 4567731 12354431 25555 555667777
Q ss_pred ccccEEecccCCCcccCCCch--HHHHHHHHhhCCCCeEEEEec-hHHHHHHHHHHCCCCch-------hhHHHHHHH--
Q 013861 341 EGADILLFSVLGSQVKPGLPY--LDVIRLLRDKYPLPIAAYQVS-GEYSMIKAGGALKMIDE-------QRVMMESLM-- 408 (435)
Q Consensus 341 EGADilM~~~~~~~VKPal~Y--LDIIr~vk~~~~lPvaaYqVS-GEYaMikaAa~~G~ide-------~~~v~Esl~-- 408 (435)
+.-+++. +.=.++. +|=.++++++.++||++-... -....++.+.+.|+.|- --.+.|++.
T Consensus 309 ~~y~I~~-------IEDPl~~~D~eg~~~Lt~~~~ipIvgDE~~vtn~~~l~~~I~~~aad~i~iKl~qiGGITea~~~a 381 (457)
T PLN00191 309 SDYPIVS-------IEDPFDQDDWEHWAKLTSLEDVQIVGDDLLVTNPKRVAKAIQEKACNALLLKVNQIGTVTESIEAV 381 (457)
T ss_pred hcCCcEE-------EECCCCcccHHHHHHHHccCCCcEEccCcccCCHHHHHHHHHhCCCCEEEecccccCCHHHHHHHH
Confidence 7778877 6655544 566788999999999996654 33556667777777664 122445544
Q ss_pred -HHHHhcccEeehh
Q 013861 409 -CLRRAGADIILTY 421 (435)
Q Consensus 409 -~ikRAGAd~IiTY 421 (435)
-.+.+|-.++++.
T Consensus 382 ~lA~~~G~~~~ish 395 (457)
T PLN00191 382 KMSKAAGWGVMTSH 395 (457)
T ss_pred HHHHHCCCEEEeCC
Confidence 4477888888854
No 245
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=53.54 E-value=59 Score=31.49 Aligned_cols=60 Identities=20% Similarity=0.312 Sum_probs=40.6
Q ss_pred chHHHHHHHHhhCCCCeEE--E-Ee---chHHHHHHHHHHCCCC-----c-hhhHHHHHHHHHHHhcccEee
Q 013861 360 PYLDVIRLLRDKYPLPIAA--Y-QV---SGEYSMIKAGGALKMI-----D-EQRVMMESLMCLRRAGADIIL 419 (435)
Q Consensus 360 ~YLDIIr~vk~~~~lPvaa--Y-qV---SGEYaMikaAa~~G~i-----d-e~~~v~Esl~~ikRAGAd~Ii 419 (435)
.++++++++|++.++|+.. | +. .|.=.+++.++++|.- | .-+-..+.+..+++.|.+.|+
T Consensus 63 ~~~~~~~~vr~~~~~pv~lm~y~n~~~~~G~~~fi~~~~~aG~~giiipDl~~ee~~~~~~~~~~~g~~~i~ 134 (242)
T cd04724 63 DVLELVKEIRKKNTIPIVLMGYYNPILQYGLERFLRDAKEAGVDGLIIPDLPPEEAEEFREAAKEYGLDLIF 134 (242)
T ss_pred HHHHHHHHHhhcCCCCEEEEEecCHHHHhCHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHHcCCcEEE
Confidence 5799999999988889655 5 43 2444567777777751 1 112345677788888888775
No 246
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=53.01 E-value=27 Score=35.00 Aligned_cols=91 Identities=15% Similarity=0.151 Sum_probs=53.8
Q ss_pred HHHHHHHHHcCCCeEEEeecCCCC-CCCcccCcCcCCCC---CHHHHHHHHHHHCCCeEEEeeec---ccCCCCCCccee
Q 013861 160 VQEVAKARDVGVNSVVLFPKVPDA-LKSPTGDEAYNDNG---LVPRTIWLLKDRYPDLVIYTDVA---LDPYSSDGHDGI 232 (435)
Q Consensus 160 ~~~v~~~~~~GI~sv~LFgvi~~~-~Kd~~Gs~A~~~~g---~v~raIr~iK~~~Pdl~IitDVc---Lc~YTshGHcGI 232 (435)
.+.++.+++.|+..|-+|--+.+. .+...+ .+.+- -+.++|+..|+.. +.+..-+| -|||
T Consensus 82 ~~~ie~A~~~g~~~v~i~~~~s~~~~~~n~~---~~~~e~l~~~~~~v~~ak~~g--~~v~~~i~~~~~~~~-------- 148 (287)
T PRK05692 82 LKGLEAALAAGADEVAVFASASEAFSQKNIN---CSIAESLERFEPVAEAAKQAG--VRVRGYVSCVLGCPY-------- 148 (287)
T ss_pred HHHHHHHHHcCCCEEEEEEecCHHHHHHHhC---CCHHHHHHHHHHHHHHHHHcC--CEEEEEEEEEecCCC--------
Confidence 556788999999999998544321 111111 11111 2345666766664 44444343 3555
Q ss_pred ecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC
Q 013861 233 VREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMD 270 (435)
Q Consensus 233 v~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMMD 270 (435)
+|.. +.+.+.+.+-...++|||.|.-.|+.=
T Consensus 149 ---~~~~----~~~~~~~~~~~~~~~G~d~i~l~DT~G 179 (287)
T PRK05692 149 ---EGEV----PPEAVADVAERLFALGCYEISLGDTIG 179 (287)
T ss_pred ---CCCC----CHHHHHHHHHHHHHcCCcEEEeccccC
Confidence 2332 345566666666789999999988764
No 247
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=52.70 E-value=1.7e+02 Score=27.66 Aligned_cols=22 Identities=23% Similarity=0.166 Sum_probs=15.9
Q ss_pred HHHHHHHHHHhcccEeehhcHH
Q 013861 403 MMESLMCLRRAGADIILTYFAL 424 (435)
Q Consensus 403 v~Esl~~ikRAGAd~IiTYfA~ 424 (435)
+-++......+|||+|-|+|..
T Consensus 145 i~~~~~~a~~~GaD~Ik~~~~~ 166 (235)
T cd00958 145 IAYAARIGAELGADIVKTKYTG 166 (235)
T ss_pred HHHHHHHHHHHCCCEEEecCCC
Confidence 3333555668899999999853
No 248
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=52.51 E-value=3.6e+02 Score=29.77 Aligned_cols=196 Identities=16% Similarity=0.182 Sum_probs=113.1
Q ss_pred CCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeee---cccC
Q 013861 147 MPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDV---ALDP 223 (435)
Q Consensus 147 MPGv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDV---cLc~ 223 (435)
-++=.|++.+ +.+..++.+-+.|+.++=..|- +.-|. ..-|-.+.+ -..+|.|++..|+.-+..=. .+--
T Consensus 18 Sl~atr~~t~-d~l~ia~~ld~~G~~siE~~GG---atfd~--~~rfl~Edp-werlr~lr~~~~nt~lqmL~Rg~N~vG 90 (499)
T PRK12330 18 SLMATRMAME-DMVGACEDIDNAGYWSVECWGG---ATFDA--CIRFLNEDP-WERLRTFRKLMPNSRLQMLLRGQNLLG 90 (499)
T ss_pred cccCccCCHH-HHHHHHHHHHhcCCCEEEecCC---cchhh--hhcccCCCH-HHHHHHHHHhCCCCeEEEEEcccccCC
Confidence 3455688886 5899999999999999988652 22222 111223333 35799999999985544211 1333
Q ss_pred CCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCC---CchHHHHHHHHHHCCCCCceeechhhhhccc
Q 013861 224 YSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMM---DGRVGAIRAALDAEGFQHVSIMSYTAKYASS 300 (435)
Q Consensus 224 YTshGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMM---DGrVgAIR~aLD~~Gf~~v~IMSYSaKyASa 300 (435)
|+. --|..++.-.+.|. ++|.|++--.|=+ +..-.+|+.+ .++|..-..-++|+. |
T Consensus 91 y~~-------------y~ddvv~~fv~~a~---~~Gidi~RIfd~lndv~nl~~ai~~v-k~ag~~~~~~i~yt~---s- 149 (499)
T PRK12330 91 YRH-------------YEDEVVDRFVEKSA---ENGMDVFRVFDALNDPRNLEHAMKAV-KKVGKHAQGTICYTV---S- 149 (499)
T ss_pred ccC-------------cchhHHHHHHHHHH---HcCCCEEEEEecCChHHHHHHHHHHH-HHhCCeEEEEEEEec---C-
Confidence 321 12445556666654 5699987544433 3455555544 456653336667754 1
Q ss_pred ccccchhhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhC--CCCeEE
Q 013861 301 FYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKY--PLPIAA 378 (435)
Q Consensus 301 fYGPFRdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~--~lPvaa 378 (435)
|. .++.-..+-.+++ ++-|||.|-+.---...+|... -++|+.+|+.+ ++||.
T Consensus 150 ------------p~--------~t~e~~~~~a~~l---~~~Gad~I~IkDtaGll~P~~~-~~LV~~Lk~~~~~~ipI~- 204 (499)
T PRK12330 150 ------------PI--------HTVEGFVEQAKRL---LDMGADSICIKDMAALLKPQPA-YDIVKGIKEACGEDTRIN- 204 (499)
T ss_pred ------------CC--------CCHHHHHHHHHHH---HHcCCCEEEeCCCccCCCHHHH-HHHHHHHHHhCCCCCeEE-
Confidence 11 1332222322222 3469999985544444566643 48999999999 69985
Q ss_pred EEechH----HHHHHHHHHCC
Q 013861 379 YQVSGE----YSMIKAGGALK 395 (435)
Q Consensus 379 YqVSGE----YaMikaAa~~G 395 (435)
+|---. .+-..+|.++|
T Consensus 205 ~H~Hnt~GlA~An~laAieAG 225 (499)
T PRK12330 205 LHCHSTTGVTLVSLMKAIEAG 225 (499)
T ss_pred EEeCCCCCcHHHHHHHHHHcC
Confidence 565322 33344466666
No 249
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=52.42 E-value=1.6e+02 Score=29.14 Aligned_cols=58 Identities=14% Similarity=0.189 Sum_probs=41.5
Q ss_pred hHHHHHHHHhh-CCCCeEEEEec------hHHHHHHHHHHCCCC-----chh-hHHHHHHHHHHHhcccEe
Q 013861 361 YLDVIRLLRDK-YPLPIAAYQVS------GEYSMIKAGGALKMI-----DEQ-RVMMESLMCLRRAGADII 418 (435)
Q Consensus 361 YLDIIr~vk~~-~~lPvaaYqVS------GEYaMikaAa~~G~i-----de~-~~v~Esl~~ikRAGAd~I 418 (435)
.|++++.+|+. +++|+...-+. |.-..++.++++|.- |+- +-..|.+..++..|.+.|
T Consensus 74 ~~~~v~~ir~~~~~~plv~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~~~~gl~~i 144 (256)
T TIGR00262 74 CFELLKKVRQKHPNIPIGLLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADLPLEESGDLVEAAKKHGVKPI 144 (256)
T ss_pred HHHHHHHHHhcCCCCCEEEEEeccHHhhhhHHHHHHHHHHcCCCEEEECCCChHHHHHHHHHHHHCCCcEE
Confidence 38889999876 68896544443 667788888888862 221 335677888899999976
No 250
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=52.41 E-value=25 Score=36.08 Aligned_cols=57 Identities=12% Similarity=0.263 Sum_probs=41.7
Q ss_pred CCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeE
Q 013861 147 MPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLV 214 (435)
Q Consensus 147 MPGv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~ 214 (435)
.+. +.++.+ .+.++++.+.+.|++.|.|.|--++..+ +-.-+.++++.||+.||++-
T Consensus 98 ~~~-~~Ls~e-EI~~~a~~~~~~Gv~~i~lvgGe~p~~~---------~~e~l~eii~~Ik~~~p~i~ 154 (366)
T TIGR02351 98 IKR-KKLNEE-EIEREIEAIKKSGFKEILLVTGESEKAA---------GVEYIAEAIKLAREYFSSLA 154 (366)
T ss_pred Ccc-CcCCHH-HHHHHHHHHHhCCCCEEEEeeCCCCCCC---------CHHHHHHHHHHHHHhCCccc
Confidence 344 677886 6999999999999999998742222111 11357889999999998764
No 251
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=52.34 E-value=97 Score=29.94 Aligned_cols=110 Identities=18% Similarity=0.237 Sum_probs=61.8
Q ss_pred eechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCC-CeEEEeeecccCCCCCCcc
Q 013861 152 RLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYP-DLVIYTDVALDPYSSDGHD 230 (435)
Q Consensus 152 r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~P-dl~IitDVcLc~YTshGHc 230 (435)
.+.++ .+.+.++.+++.|++.+.++|... +-..=...=-.+.++...+... ++-||+=|.
T Consensus 14 ~iD~~-~~~~~i~~l~~~Gv~gi~~~GstG--------E~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~---------- 74 (281)
T cd00408 14 EVDLD-ALRRLVEFLIEAGVDGLVVLGTTG--------EAPTLTDEERKEVIEAVVEAVAGRVPVIAGVG---------- 74 (281)
T ss_pred CcCHH-HHHHHHHHHHHcCCCEEEECCCCc--------ccccCCHHHHHHHHHHHHHHhCCCCeEEEecC----------
Confidence 45564 689999999999999999999632 2111111112334444444432 344554321
Q ss_pred eeecCCCccccHHHHHHHHHHHHHHHHcCCCeec--CCCCC----CchHHHHHHHHHHCCCCCceeechh
Q 013861 231 GIVREDGVIMNDETVHQLCKQAVSQARAGADVVS--PSDMM----DGRVGAIRAALDAEGFQHVSIMSYT 294 (435)
Q Consensus 231 GIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVA--PSDMM----DGrVgAIR~aLD~~Gf~~v~IMSYS 294 (435)
. .+.+...++|-..+++|||.|. |--.. +|-+...++..+. .+.+||=|-
T Consensus 75 -------~----~~~~~~i~~a~~a~~~Gad~v~v~pP~y~~~~~~~~~~~~~~ia~~---~~~pi~iYn 130 (281)
T cd00408 75 -------A----NSTREAIELARHAEEAGADGVLVVPPYYNKPSQEGIVAHFKAVADA---SDLPVILYN 130 (281)
T ss_pred -------C----ccHHHHHHHHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhc---CCCCEEEEE
Confidence 1 1122344455566788999542 21111 5666666666654 578888773
No 252
>TIGR00035 asp_race aspartate racemase.
Probab=51.83 E-value=89 Score=29.76 Aligned_cols=90 Identities=16% Similarity=0.203 Sum_probs=53.1
Q ss_pred CCCeEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCC-CCCch---------------H
Q 013861 210 YPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSD-MMDGR---------------V 273 (435)
Q Consensus 210 ~Pdl~IitDVcLc~YTshGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSD-MMDGr---------------V 273 (435)
.++++|+-+..+-..|.+ +++. +.++=...+.+.+-.+.++|||.|.=.. -+..- +
T Consensus 34 ~~~~i~~~~~~~~dr~~~----~~~~----~~~~~~~~l~~~~~~L~~~g~d~iviaCNTah~~~~~l~~~~~iPii~i~ 105 (229)
T TIGR00035 34 HPAEVLFNNPNIPDRTAY----ILGR----GEDRPRPILIDIAVKLENAGADFIIMPCNTAHKFAEDIQKAIGIPLISMI 105 (229)
T ss_pred CCceeeeeCCCHHHHHHH----HhcC----CcchHHHHHHHHHHHHHHcCCCEEEECCccHHHHHHHHHHhCCCCEechH
Confidence 455667666665444332 2221 1233556677788888899999875332 22222 2
Q ss_pred HHHHHHHHHCCCCCceeechhhhhcccccccchh
Q 013861 274 GAIRAALDAEGFQHVSIMSYTAKYASSFYGPFRE 307 (435)
Q Consensus 274 gAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRd 307 (435)
.+.-+++.+.|..+|+||+=..--.|.+|.-+=+
T Consensus 106 ~~~~~~~~~~~~~~VgvLaT~~T~~s~~y~~~l~ 139 (229)
T TIGR00035 106 EETAEAVKEDGVKKAGLLGTKGTMKDGVYEREMK 139 (229)
T ss_pred HHHHHHHHHcCCCEEEEEecHHHHHhHHHHHHHH
Confidence 2233445667889999997666677777654443
No 253
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=51.71 E-value=62 Score=33.08 Aligned_cols=96 Identities=13% Similarity=0.084 Sum_probs=64.8
Q ss_pred HHHHHHHHHHcCCCeEEEee----------c-CCCCCCCcccCcCcCCCCCHHHHHHHHHHHCC-----CeEEEeeeccc
Q 013861 159 LVQEVAKARDVGVNSVVLFP----------K-VPDALKSPTGDEAYNDNGLVPRTIWLLKDRYP-----DLVIYTDVALD 222 (435)
Q Consensus 159 l~~~v~~~~~~GI~sv~LFg----------v-i~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~P-----dl~IitDVcLc 222 (435)
..+-++.+.+.|...|-|.+ . ..+.-.|+.|-.-.|.--++.+.|+.||++++ ++.|..-+..+
T Consensus 146 f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~~~~~~~v~~R~s~~ 225 (353)
T cd04735 146 FGEATRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHADKDFILGYRFSPE 225 (353)
T ss_pred HHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhccccCCCceEEEEECcc
Confidence 44455667889999998853 1 12334788877666666778889999999984 78888877765
Q ss_pred CCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCC
Q 013861 223 PYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDM 268 (435)
Q Consensus 223 ~YTshGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDM 268 (435)
.|.. |-++-++++ +.+-.+.++|+|.|.-|..
T Consensus 226 ~~~~----------~g~~~ee~~----~i~~~L~~~GvD~I~Vs~g 257 (353)
T cd04735 226 EPEE----------PGIRMEDTL----ALVDKLADKGLDYLHISLW 257 (353)
T ss_pred cccC----------CCCCHHHHH----HHHHHHHHcCCCEEEeccC
Confidence 5421 222334443 4444457899999998864
No 254
>COG0685 MetF 5,10-methylenetetrahydrofolate reductase [Amino acid transport and metabolism]
Probab=51.63 E-value=2.3e+02 Score=28.64 Aligned_cols=129 Identities=19% Similarity=0.270 Sum_probs=81.0
Q ss_pred CcccCCCCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeec
Q 013861 141 DTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVA 220 (435)
Q Consensus 141 ~~~I~sMPGv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVc 220 (435)
.++|.-++.+.+ +.. .+.+.++.+.+.||+.|++-.==|+ .-|..+.. +.--...|++||+.+.+. .-.=++
T Consensus 78 ~~~i~Hltc~d~-n~~-~i~~~l~~~~~~Gi~~ilaLrGDpp-~g~~~~~~----~~~s~dLv~lik~~~~~~-f~i~~A 149 (291)
T COG0685 78 IEPIPHLTCRDR-NRI-EIISILKGAAALGIRNILALRGDPP-AGDKPGGK----DLYSVDLVELIKKMRGGI-FDIGVA 149 (291)
T ss_pred CccceeecccCC-CHH-HHHHHHHHHHHhCCceEEEecCCCC-CCCCCCcc----ccCHHHHHHHHHHhcCCe-EEEEEE
Confidence 346667777777 654 6999999999999999988543121 12222221 445667999999888774 222345
Q ss_pred ccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC-chHHHHHHHHHHCCCCCceee
Q 013861 221 LDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMD-GRVGAIRAALDAEGFQHVSIM 291 (435)
Q Consensus 221 Lc~YTshGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMMD-GrVgAIR~aLD~~Gf~~v~IM 291 (435)
++|+ ||.- .++ -+.-+..|.+ --+||||.+=.-=.-| -.+..+++.+...|- +++|.
T Consensus 150 ~~Pe---~h~~--s~~----~~~d~~~lkr----Kv~aGAd~~iTQ~~fd~e~~~~~~~~~~~~g~-~~pI~ 207 (291)
T COG0685 150 AYPE---GHPE--SKD----VKEDIKRLKR----KVDAGADFFITQFFFDVEAFERFAERVRAAGI-DIPII 207 (291)
T ss_pred eCCC---CCcc--chh----hHHHHHHHHH----HHhcchHHHHHHHccCHHHHHHHHHHHHhcCC-CCCee
Confidence 6666 3332 111 1222333332 2349999988777777 467889999998885 54443
No 255
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=51.48 E-value=68 Score=32.56 Aligned_cols=98 Identities=23% Similarity=0.257 Sum_probs=59.1
Q ss_pred ccccchhhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCC---CcccCCCc-----hHHHHHHHHhhC
Q 013861 301 FYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLG---SQVKPGLP-----YLDVIRLLRDKY 372 (435)
Q Consensus 301 fYGPFRdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~---~~VKPal~-----YLDIIr~vk~~~ 372 (435)
-|...|+...+.|-+.+--..|..+.+.++ ++++...+ +||.+=+.+ + ..+.|... |+|.|+.+++.+
T Consensus 102 ~~~~vr~~~~~~p~~~Nl~~~~~~~~~~~~-~~~~i~~~--~adalel~l-~~~q~~~~~~~~~df~~~~~~i~~l~~~~ 177 (326)
T cd02811 102 SFTVVREAPPNGPLIANLGAVQLNGYGVEE-ARRAVEMI--EADALAIHL-NPLQEAVQPEGDRDFRGWLERIEELVKAL 177 (326)
T ss_pred HHHHHHHhCCCceEEeecCccccCCCCHHH-HHHHHHhc--CCCcEEEeC-cchHhhcCCCCCcCHHHHHHHHHHHHHhc
Confidence 344455555556655555566765444444 45555545 577765322 2 12333322 569999999999
Q ss_pred CCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEee
Q 013861 373 PLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIIL 419 (435)
Q Consensus 373 ~lPvaaYqVSGEYaMikaAa~~G~ide~~~v~Esl~~ikRAGAd~Ii 419 (435)
++||.+=. +| .|.. .|....+.++|+|.|.
T Consensus 178 ~vPVivK~-~g----------~g~s------~~~a~~l~~~Gvd~I~ 207 (326)
T cd02811 178 SVPVIVKE-VG----------FGIS------RETAKRLADAGVKAID 207 (326)
T ss_pred CCCEEEEe-cC----------CCCC------HHHHHHHHHcCCCEEE
Confidence 99999543 22 1211 4667788889999998
No 256
>PRK07475 hypothetical protein; Provisional
Probab=51.41 E-value=1e+02 Score=30.11 Aligned_cols=125 Identities=17% Similarity=0.158 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHHHcCCCeecCCC--------------------CCCchHHHHHHHHHHCCCCCceeechhhhhccccc
Q 013861 243 ETVHQLCKQAVSQARAGADVVSPSD--------------------MMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFY 302 (435)
Q Consensus 243 ~Tv~~Lak~Avs~A~AGADiVAPSD--------------------MMDGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafY 302 (435)
.-+..+.+.+..+.++|||.|+=+. |..-.|.++++.+ .+.++|+|++..+ +.+|
T Consensus 62 ~~~~~l~~aa~~L~~~G~d~I~~~Cgt~~~~~~~l~~~~~VPv~~ss~~~v~~l~~~~--~~~~kIGILtt~~---t~l~ 136 (245)
T PRK07475 62 SLLDAFVAAARELEAEGVRAITTSCGFLALFQRELAAALGVPVATSSLLQVPLIQALL--PAGQKVGILTADA---SSLT 136 (245)
T ss_pred cHHHHHHHHHHHHHHcCCCEEEechHHHHHHHHHHHHHcCCCEeccHHHHHHHHHHhc--cCCCeEEEEeCCc---hhhh
Confidence 3577888889999999999987665 1111222222222 2457899998744 4588
Q ss_pred ccchhhhcCC------CCCCCcc-------cc----CCCCCCHHHHHHHHHhcc---cccccEEecccCCCcccCCCchH
Q 013861 303 GPFREALDSN------PRFGDKK-------TY----QMNPANYREALVEAQADE---SEGADILLFSVLGSQVKPGLPYL 362 (435)
Q Consensus 303 GPFRdA~~Sa------p~fgDRk-------tY----Qmdp~N~~EAlre~~~D~---~EGADilM~~~~~~~VKPal~YL 362 (435)
.-|=++++-. ...|... -| +.|....++.+.++.+.+ ..|+|.|+++.-. + |
T Consensus 137 ~~~l~~~Gi~~~~~~~~~~g~e~~~~~~~~I~~~~~~~d~~~~~~~l~~~~~~l~~~~~~~daIvL~CTe--L-p----- 208 (245)
T PRK07475 137 PAHLLAVGVPPDTSSLPIAGLEEGGEFRRNILENRGELDNEAAEQEVVAAARALLERHPDIGAIVLECTN--M-P----- 208 (245)
T ss_pred HHHHHhCCCCCCCccccccCcccchHHHHHHhcccccccHHHHHHHHHHHHHHHHhhCCCCCEEEEcCcC--h-H-----
Confidence 7665666542 1222111 11 012222244566666555 4599999944322 2 2
Q ss_pred HHHHHHHhhCCCCeEEEE
Q 013861 363 DVIRLLRDKYPLPIAAYQ 380 (435)
Q Consensus 363 DIIr~vk~~~~lPvaaYq 380 (435)
.+...+.+.+++||.-.+
T Consensus 209 ~~~~~le~~~glPViDs~ 226 (245)
T PRK07475 209 PYAAAIQRATGLPVFDIV 226 (245)
T ss_pred HHHHHHHHhcCCCEEeHH
Confidence 233566667889986543
No 257
>TIGR01740 pyrF orotidine 5'-phosphate decarboxylase, subfamily 1. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. In many eukaryotes, the region hit by this model is part of a multifunctional protein.
Probab=51.08 E-value=40 Score=31.88 Aligned_cols=74 Identities=20% Similarity=0.182 Sum_probs=46.2
Q ss_pred CCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCch-----HHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCC
Q 013861 323 MNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPY-----LDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMI 397 (435)
Q Consensus 323 mdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~Y-----LDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G~i 397 (435)
+|..|.+||++-+.. +.+-.| + +|+++++ .++|+.+|+... |+++ ..+.-
T Consensus 5 lD~~~~~~a~~~~~~-~~~~v~--~-------iKig~~l~~~~G~~~v~~l~~~~~-~v~l--------------D~K~~ 59 (213)
T TIGR01740 5 LDVTTKDEALDLADS-LGPEIE--V-------IKVGIDLLLDGGDKIIDELAKLNK-LIFL--------------DLKFA 59 (213)
T ss_pred CCCCCHHHHHHHHHh-cCCcCc--E-------EEECHHHHHhcCHHHHHHHHHcCC-CEEE--------------EEeec
Confidence 678899999886654 444344 6 8999877 577888888654 3331 22223
Q ss_pred chhhHHHHHHHHHHHhcccEeehh
Q 013861 398 DEQRVMMESLMCLRRAGADIILTY 421 (435)
Q Consensus 398 de~~~v~Esl~~ikRAGAd~IiTY 421 (435)
|--+.+-.....+.++|||++.-.
T Consensus 60 Dig~t~~~~~~~~~~~gad~vTvh 83 (213)
T TIGR01740 60 DIPNTVKLQYESKIKQGADMVNVH 83 (213)
T ss_pred chHHHHHHHHHHHHhcCCCEEEEc
Confidence 333444445555667888886543
No 258
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=50.87 E-value=29 Score=34.79 Aligned_cols=107 Identities=14% Similarity=0.182 Sum_probs=71.4
Q ss_pred CCccccHHHHHHHHHHHHHHHHcCCCeecCCCCC--------CchHHHHHHHHHHCCCCCceeechhhhhcccccccchh
Q 013861 236 DGVIMNDETVHQLCKQAVSQARAGADVVSPSDMM--------DGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFRE 307 (435)
Q Consensus 236 ~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMM--------DGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRd 307 (435)
+|.|| -+.++.|++ .+.++|+|-|-+.+-. +=|..-++.+.+..+ .+++||.-..
T Consensus 23 ~g~iD-~~~l~~lv~---~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~-grvpvi~Gv~------------ 85 (309)
T cd00952 23 TDTVD-LDETARLVE---RLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVA-GRVPVFVGAT------------ 85 (309)
T ss_pred CCCcC-HHHHHHHHH---HHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhC-CCCCEEEEec------------
Confidence 47776 444444444 4556899988776542 346667777777765 5677775421
Q ss_pred hhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCch-------HHHHHHHHhhC-CCCeEEE
Q 013861 308 ALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPY-------LDVIRLLRDKY-PLPIAAY 379 (435)
Q Consensus 308 A~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~Y-------LDIIr~vk~~~-~lPvaaY 379 (435)
-.|.+|+++.++.=.+-|||.+| |=|-..| .|--+.+.+.+ ++||..|
T Consensus 86 -----------------~~~t~~ai~~a~~A~~~Gad~vl-------v~~P~y~~~~~~~l~~yf~~va~a~~~lPv~iY 141 (309)
T cd00952 86 -----------------TLNTRDTIARTRALLDLGADGTM-------LGRPMWLPLDVDTAVQFYRDVAEAVPEMAIAIY 141 (309)
T ss_pred -----------------cCCHHHHHHHHHHHHHhCCCEEE-------ECCCcCCCCCHHHHHHHHHHHHHhCCCCcEEEE
Confidence 12678888877777778999999 6654221 44456777888 6999999
Q ss_pred Eech
Q 013861 380 QVSG 383 (435)
Q Consensus 380 qVSG 383 (435)
|.-+
T Consensus 142 n~P~ 145 (309)
T cd00952 142 ANPE 145 (309)
T ss_pred cCch
Confidence 8853
No 259
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=50.60 E-value=47 Score=34.35 Aligned_cols=47 Identities=13% Similarity=0.188 Sum_probs=35.3
Q ss_pred HHHHHHHHhcccccc--cEEecccCCCcccCCCch----HHHHHHHHhhCC-CCeEEEEec
Q 013861 329 REALVEAQADESEGA--DILLFSVLGSQVKPGLPY----LDVIRLLRDKYP-LPIAAYQVS 382 (435)
Q Consensus 329 ~EAlre~~~D~~EGA--DilM~~~~~~~VKPal~Y----LDIIr~vk~~~~-lPvaaYqVS 382 (435)
.|.+.++..=++.|+ |+|. |-.+..+ .++|+.+|++++ +||.+=+|.
T Consensus 96 ~~~~~~~~~Lv~ag~~~d~i~-------iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g~V~ 149 (326)
T PRK05458 96 DDEYDFVDQLAAEGLTPEYIT-------IDIAHGHSDSVINMIQHIKKHLPETFVIAGNVG 149 (326)
T ss_pred HHHHHHHHHHHhcCCCCCEEE-------EECCCCchHHHHHHHHHHHhhCCCCeEEEEecC
Confidence 345666666677754 9999 7666655 678999999996 999887763
No 260
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=50.46 E-value=11 Score=35.31 Aligned_cols=84 Identities=20% Similarity=0.368 Sum_probs=51.6
Q ss_pred CceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCC
Q 013861 149 GCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDG 228 (435)
Q Consensus 149 Gv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTshG 228 (435)
...|++.+ .+.+.++.+.+.|+..|.| +|..|. ..|+. +..-++.+|+.+|++ +..-|+
T Consensus 130 ~~~~~~~~-~~~~~~~~~~~~g~~~i~l--------~Dt~G~--~~P~~-v~~lv~~~~~~~~~~---------~l~~H~ 188 (237)
T PF00682_consen 130 DASRTDPE-ELLELAEALAEAGADIIYL--------ADTVGI--MTPED-VAELVRALREALPDI---------PLGFHA 188 (237)
T ss_dssp TTGGSSHH-HHHHHHHHHHHHT-SEEEE--------EETTS---S-HHH-HHHHHHHHHHHSTTS---------EEEEEE
T ss_pred ccccccHH-HHHHHHHHHHHcCCeEEEe--------eCccCC--cCHHH-HHHHHHHHHHhccCC---------eEEEEe
Confidence 33467775 5889999999999988766 122232 22322 557899999999982 333477
Q ss_pred cceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCC
Q 013861 229 HDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPS 266 (435)
Q Consensus 229 HcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPS 266 (435)
|+-. |- -...++.-.+||||+|--|
T Consensus 189 Hnd~----Gl---------a~An~laA~~aGa~~id~t 213 (237)
T PF00682_consen 189 HNDL----GL---------AVANALAALEAGADRIDGT 213 (237)
T ss_dssp BBTT----S----------HHHHHHHHHHTT-SEEEEB
T ss_pred cCCc----cc---------hhHHHHHHHHcCCCEEEcc
Confidence 7621 21 1234677789999998443
No 261
>PRK07094 biotin synthase; Provisional
Probab=50.32 E-value=71 Score=31.61 Aligned_cols=53 Identities=23% Similarity=0.307 Sum_probs=36.3
Q ss_pred ceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeE
Q 013861 150 CYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLV 214 (435)
Q Consensus 150 v~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~ 214 (435)
-|+++.+ .++++++.+.+.|++.|.|-|--+.. ++ ..-+...++.||+. +++-
T Consensus 67 r~~ls~e-ei~~~~~~~~~~g~~~i~l~gG~~~~---------~~-~~~l~~l~~~i~~~-~~l~ 119 (323)
T PRK07094 67 RYRLSPE-EILECAKKAYELGYRTIVLQSGEDPY---------YT-DEKIADIIKEIKKE-LDVA 119 (323)
T ss_pred CcCCCHH-HHHHHHHHHHHCCCCEEEEecCCCCC---------CC-HHHHHHHHHHHHcc-CCce
Confidence 4566775 69999999999999998875421110 11 12466788999887 6653
No 262
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=50.31 E-value=3.1e+02 Score=28.41 Aligned_cols=49 Identities=14% Similarity=-0.050 Sum_probs=29.5
Q ss_pred HH-HHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhCCCCeEE
Q 013861 329 RE-ALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAA 378 (435)
Q Consensus 329 ~E-Alre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~~lPvaa 378 (435)
.| ++.-+.+=.+.|.|+|=+|.-....++ ..+++..+.+|+.+++||.+
T Consensus 248 ~e~~~~~~~~L~~~giD~i~vs~~~~~~~~-~~~~~~~~~ik~~~~~pv~~ 297 (362)
T PRK10605 248 EADALYLIEQLGKRGIAYLHMSEPDWAGGE-PYSDAFREKVRARFHGVIIG 297 (362)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccccccCCc-cccHHHHHHHHHHCCCCEEE
Confidence 45 344333333468999976642211222 23567778899999999875
No 263
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=50.26 E-value=66 Score=32.52 Aligned_cols=48 Identities=21% Similarity=0.315 Sum_probs=30.3
Q ss_pred CCHHHHHHHHHhcccccccEEecccC--CCcccCCCchHHHHHHHHhhCCCCeEE
Q 013861 326 ANYREALVEAQADESEGADILLFSVL--GSQVKPGLPYLDVIRLLRDKYPLPIAA 378 (435)
Q Consensus 326 ~N~~EAlre~~~D~~EGADilM~~~~--~~~VKPal~YLDIIr~vk~~~~lPvaa 378 (435)
.+.++|.+.. +.|+|+|..... |...- ..+-++++.++++.+++||.+
T Consensus 117 ~s~~~a~~a~----~~GaD~Ivv~g~eagGh~g-~~~~~~ll~~v~~~~~iPvia 166 (307)
T TIGR03151 117 ASVALAKRME----KAGADAVIAEGMESGGHIG-ELTTMALVPQVVDAVSIPVIA 166 (307)
T ss_pred CCHHHHHHHH----HcCCCEEEEECcccCCCCC-CCcHHHHHHHHHHHhCCCEEE
Confidence 3455654433 359999993221 11111 223589999999999999875
No 264
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=50.09 E-value=37 Score=35.75 Aligned_cols=58 Identities=21% Similarity=0.230 Sum_probs=42.1
Q ss_pred HHhcccccccEEecccCCCcccCCCch----HHHHHHHHhhC-CCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHH
Q 013861 335 AQADESEGADILLFSVLGSQVKPGLPY----LDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMC 409 (435)
Q Consensus 335 ~~~D~~EGADilM~~~~~~~VKPal~Y----LDIIr~vk~~~-~lPvaaYqVSGEYaMikaAa~~G~ide~~~v~Esl~~ 409 (435)
...+...|+|+|. |--+.-| +|.|+.+|+++ +++|.|=|| .. -|....
T Consensus 115 ~L~~~~~g~D~iv-------iD~AhGhs~~~i~~ik~ik~~~P~~~vIaGNV---------------~T-----~e~a~~ 167 (346)
T PRK05096 115 QILALSPALNFIC-------IDVANGYSEHFVQFVAKAREAWPDKTICAGNV---------------VT-----GEMVEE 167 (346)
T ss_pred HHHhcCCCCCEEE-------EECCCCcHHHHHHHHHHHHHhCCCCcEEEecc---------------cC-----HHHHHH
Confidence 3333356999999 8877765 88999999999 599998877 12 223334
Q ss_pred HHHhcccEee
Q 013861 410 LRRAGADIIL 419 (435)
Q Consensus 410 ikRAGAd~Ii 419 (435)
+..||||.|.
T Consensus 168 Li~aGAD~vK 177 (346)
T PRK05096 168 LILSGADIVK 177 (346)
T ss_pred HHHcCCCEEE
Confidence 6668999873
No 265
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=50.07 E-value=1.1e+02 Score=29.93 Aligned_cols=101 Identities=15% Similarity=0.156 Sum_probs=57.3
Q ss_pred eechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCH---HHHHHHH-HHHCCCeEEEeeecccCCCCC
Q 013861 152 RLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLV---PRTIWLL-KDRYPDLVIYTDVALDPYSSD 227 (435)
Q Consensus 152 r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v---~raIr~i-K~~~Pdl~IitDVcLc~YTsh 227 (435)
+.|+..++.+.++++.+.|.++|-||..=|.. |...-+- .+.++.. ++....+..+ +.-+||.
T Consensus 6 h~s~~g~~~~a~~~~~~~G~~~~qif~~~P~~---------w~~~~~~~~~~~~~~~~~~~~~~~~~~i--~~Hapy~-- 72 (274)
T TIGR00587 6 HVSAAGGLQAAYNRAAEIGATAFMFFLKSPRW---------WRRPMLEEEVIDWFKAALETNKNLSQIV--LVHAPYL-- 72 (274)
T ss_pred EEeccCCHHHHHHHHHHhCCCEEEEEecCccc---------cCCCCCCHHHHHHHHHHHHHcCCCCcce--eccCCee--
Confidence 34555578999999999999999999874433 2222222 2333332 2322221111 2345664
Q ss_pred CcceeecCCCccccHHHHHHHHHHHHHHHHcCCCee--cCCCC
Q 013861 228 GHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVV--SPSDM 268 (435)
Q Consensus 228 GHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiV--APSDM 268 (435)
-.+...|..+ -+.|++.+.+..-.-++-||+.| -|...
T Consensus 73 --iNlas~~~~~-r~~sv~~~~~~i~~A~~lga~~vv~H~G~~ 112 (274)
T TIGR00587 73 --INLASPDEEK-EEKSLDVLDEELKRCELLGIMLYNFHPGSA 112 (274)
T ss_pred --eecCCCCHHH-HHHHHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 1122222222 35888888888877888899844 35443
No 266
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=50.06 E-value=87 Score=29.58 Aligned_cols=60 Identities=15% Similarity=0.148 Sum_probs=41.2
Q ss_pred CCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhCCCCeEE
Q 013861 316 GDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAA 378 (435)
Q Consensus 316 gDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~~lPvaa 378 (435)
|+|.+|+..-.|..|..+... +.|+|.|-+--+...-.=...-.+.|+++.+.+++|+..
T Consensus 22 g~~~~~~~~~~~~~e~a~~~~---~~G~~~l~i~dl~~~~~~~~~~~~~i~~i~~~~~~~l~v 81 (241)
T PRK13585 22 GEPGTETVSYGDPVEVAKRWV---DAGAETLHLVDLDGAFEGERKNAEAIEKIIEAVGVPVQL 81 (241)
T ss_pred cccCCceEECCCHHHHHHHHH---HcCCCEEEEEechhhhcCCcccHHHHHHHHHHcCCcEEE
Confidence 677788876678888777654 479999874444322222234478899999999888754
No 267
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=49.91 E-value=53 Score=30.78 Aligned_cols=150 Identities=20% Similarity=0.237 Sum_probs=92.6
Q ss_pred hhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCC
Q 013861 157 HGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVRED 236 (435)
Q Consensus 157 ~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTshGHcGIv~e~ 236 (435)
+.+++.++.+++.|++.|-| . .|++.+ .+.++.+|+.+|.+.+ |+..++
T Consensus 24 ~~~~~~~~~~~~~Gv~~vql--r----~k~~~~----------~e~~~~~~~~~~~~~~------------g~gtvl--- 72 (187)
T PRK07455 24 ELGLQMAEAVAAGGMRLIEI--T----WNSDQP----------AELISQLREKLPECII------------GTGTIL--- 72 (187)
T ss_pred HHHHHHHHHHHHCCCCEEEE--e----CCCCCH----------HHHHHHHHHhCCCcEE------------eEEEEE---
Confidence 35899999999999998877 2 244422 3577788887774322 222233
Q ss_pred CccccHHHHHHHHHHHHHHHHcCCCe-ecCCCCCCchHHHHHHHHHHCCCCCceeechhhhhcccccccchhhhcCCCCC
Q 013861 237 GVIMNDETVHQLCKQAVSQARAGADV-VSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRF 315 (435)
Q Consensus 237 g~IdND~Tv~~Lak~Avs~A~AGADi-VAPSDMMDGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRdA~~Sap~f 315 (435)
.|| .++. -.++|||. ++|.. |=.+...++.+ |. + . -.
T Consensus 73 ---~~d-~~~~-------A~~~gAdgv~~p~~--~~~~~~~~~~~---~~------------------~---~-----i~ 110 (187)
T PRK07455 73 ---TLE-DLEE-------AIAAGAQFCFTPHV--DPELIEAAVAQ---DI------------------P---I-----IP 110 (187)
T ss_pred ---cHH-HHHH-------HHHcCCCEEECCCC--CHHHHHHHHHc---CC------------------C---E-----Ec
Confidence 333 2222 24689994 46653 22233333322 21 0 0 01
Q ss_pred CCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCch--HHHHHHHHhhC-CCCeEEEEechHHHHHHHHH
Q 013861 316 GDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPY--LDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGG 392 (435)
Q Consensus 316 gDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~Y--LDIIr~vk~~~-~lPvaaYqVSGEYaMikaAa 392 (435)
| ..|..|+.+.. +.|||.|= +=|+-+. +|.|+.++..+ ++|+.+
T Consensus 111 G--------~~t~~e~~~A~----~~Gadyv~-------~Fpt~~~~G~~~l~~~~~~~~~ipvva-------------- 157 (187)
T PRK07455 111 G--------ALTPTEIVTAW----QAGASCVK-------VFPVQAVGGADYIKSLQGPLGHIPLIP-------------- 157 (187)
T ss_pred C--------cCCHHHHHHHH----HCCCCEEE-------ECcCCcccCHHHHHHHHhhCCCCcEEE--------------
Confidence 3 34556644333 48999999 6777555 79999999999 599986
Q ss_pred HCCCCchhhHHHHHHHHHHHhcccEe
Q 013861 393 ALKMIDEQRVMMESLMCLRRAGADII 418 (435)
Q Consensus 393 ~~G~ide~~~v~Esl~~ikRAGAd~I 418 (435)
-|-++. |.+..+..|||+.+
T Consensus 158 -iGGI~~-----~n~~~~l~aGa~~v 177 (187)
T PRK07455 158 -TGGVTL-----ENAQAFIQAGAIAV 177 (187)
T ss_pred -eCCCCH-----HHHHHHHHCCCeEE
Confidence 466765 45567778999985
No 268
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=49.78 E-value=95 Score=33.64 Aligned_cols=98 Identities=21% Similarity=0.251 Sum_probs=66.6
Q ss_pred CCCCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHH-HHhhCCCCeEE---EEechHHHHHHHHHHCCCCch
Q 013861 324 NPANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRL-LRDKYPLPIAA---YQVSGEYSMIKAGGALKMIDE 399 (435)
Q Consensus 324 dp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~-vk~~~~lPvaa---YqVSGEYaMikaAa~~G~ide 399 (435)
+..+.++=++.+..=++-|||-|| ==--.--||-||+ +-+++++||+. ||+-.|+. ....|.
T Consensus 72 ~~~d~~~E~~K~~~A~~~GADtiM-------DLStGgdl~~iR~~il~~s~vpvGTVPiYqa~~~~~-------~~~~~m 137 (423)
T TIGR00190 72 DTSDIEEEVEKALIAIKYGADTVM-------DLSTGGDLDEIRKAILDAVPVPVGTVPIYQAAEKVH-------GAVEDM 137 (423)
T ss_pred CCCCHHHHHHHHHHHHHcCCCeEe-------eccCCCCHHHHHHHHHHcCCCCccCccHHHHHHHhc-------CChhhC
Confidence 445777889999999999999999 2222234677764 55778999885 77766553 123332
Q ss_pred -hhHHHHHHHHHHHhcccEeehh--cHHHHHHHHhccCC
Q 013861 400 -QRVMMESLMCLRRAGADIILTY--FALQAARCLCGEKR 435 (435)
Q Consensus 400 -~~~v~Esl~~ikRAGAd~IiTY--fA~~~a~~L~~~~~ 435 (435)
.+-+++.+..=-+-|.|++--. ..++.++.|++++|
T Consensus 138 t~d~~~~~ie~qa~dGVDfmTiH~Gi~~~~~~~~~~~~R 176 (423)
T TIGR00190 138 DEDDMFRAIEKQAKDGVDFMTIHAGVLLEYVERLKRSGR 176 (423)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEccchhHHHHHHHHhCCC
Confidence 2577888888888999986332 35777777765443
No 269
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=49.69 E-value=20 Score=33.28 Aligned_cols=66 Identities=26% Similarity=0.466 Sum_probs=44.0
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCC------------HHHHHHHHHHHCCCeEEEeeecccCCC
Q 013861 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGL------------VPRTIWLLKDRYPDLVIYTDVALDPYS 225 (435)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~------------v~raIr~iK~~~Pdl~IitDVcLc~YT 225 (435)
+|.+.+..+.++||++|.|=|+.+ .+.+...|++... +.+-|++++++ +|-||-|+.+-+ |
T Consensus 5 gi~~kLdyl~~lGv~~I~l~Pi~~----~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~--gi~VilD~V~NH-~ 77 (316)
T PF00128_consen 5 GIIDKLDYLKDLGVNAIWLSPIFE----SPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKR--GIKVILDVVPNH-T 77 (316)
T ss_dssp HHHHTHHHHHHHTESEEEESS-EE----SSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHT--TCEEEEEEETSE-E
T ss_pred HHHHhhHHHHHcCCCceecccccc----cccccccccceeeeccccccchhhhhhhhhhccccc--cceEEEeeeccc-c
Confidence 689999999999999999988644 2224444543332 34555555555 799999999863 3
Q ss_pred CCCcc
Q 013861 226 SDGHD 230 (435)
Q Consensus 226 shGHc 230 (435)
+.+|.
T Consensus 78 ~~~~~ 82 (316)
T PF00128_consen 78 SDDHP 82 (316)
T ss_dssp ETTSH
T ss_pred ccccc
Confidence 44443
No 270
>PRK05926 hypothetical protein; Provisional
Probab=49.63 E-value=27 Score=36.32 Aligned_cols=120 Identities=13% Similarity=0.160 Sum_probs=69.7
Q ss_pred CCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCC
Q 013861 147 MPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSS 226 (435)
Q Consensus 147 MPGv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTs 226 (435)
-+.-|.++.+ ++++.++++ +.|++.|.|-+-..+. + +-..+...++.||+.||++-+-+ +|.
T Consensus 93 ~~~~~~ls~e-eI~~~a~~a-~~G~~ei~iv~G~~p~---------~-~~e~~~e~i~~Ik~~~p~i~i~a------~s~ 154 (370)
T PRK05926 93 DPKGWFYTPD-QLVQSIKEN-PSPITETHIVAGCFPS---------C-NLAYYEELFSKIKQNFPDLHIKA------LTA 154 (370)
T ss_pred CcccccCCHH-HHHHHHHHH-hcCCCEEEEEeCcCCC---------C-CHHHHHHHHHHHHHhCCCeeEEE------CCH
Confidence 4566788886 599999999 7999999885421111 1 11345678999999999886432 110
Q ss_pred CCcceeecCCCccccHHHHHHHHHHHHHHHH-cCC--------CeecCCCCC-CchHHHHHHHHHHCCCC
Q 013861 227 DGHDGIVREDGVIMNDETVHQLCKQAVSQAR-AGA--------DVVSPSDMM-DGRVGAIRAALDAEGFQ 286 (435)
Q Consensus 227 hGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~-AGA--------DiVAPSDMM-DGrVgAIR~aLD~~Gf~ 286 (435)
.=-|-+ .....+..++.++.|.+.-+..-- .|+ +.++|.... |-++..+|. +.+.|+.
T Consensus 155 ~Ei~~~-~~~~~~~~~e~l~~LkeAGl~~~~g~GaEi~~e~~r~~~~p~~~t~~e~l~~i~~-a~~~Gi~ 222 (370)
T PRK05926 155 IEYAYL-SKLDNLPVKEVLQTLKIAGLDSIPGGGAEILVDEIRETLAPGRLSSQGFLEIHKT-AHSLGIP 222 (370)
T ss_pred HHHHHH-HhhcCCCHHHHHHHHHHcCcCccCCCCchhcCHHHHHhhCCCCCCHHHHHHHHHH-HHHcCCc
Confidence 000111 112234556667776655442222 133 335565554 567777764 4577873
No 271
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=49.35 E-value=1.2e+02 Score=31.02 Aligned_cols=170 Identities=18% Similarity=0.205 Sum_probs=95.7
Q ss_pred HHHHHHHHHHcCCCeEEEee----------c-CCCCCCCcccCcCcCCCCCHHHHHHHHHHHCC-CeEEEeeecccCCCC
Q 013861 159 LVQEVAKARDVGVNSVVLFP----------K-VPDALKSPTGDEAYNDNGLVPRTIWLLKDRYP-DLVIYTDVALDPYSS 226 (435)
Q Consensus 159 l~~~v~~~~~~GI~sv~LFg----------v-i~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~P-dl~IitDVcLc~YTs 226 (435)
..+-++.+.+.|...|-|.+ . ..+.-.|+.|-.-.|.--++...++.|+++++ |+.|..=+....|
T Consensus 139 f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~~vG~d~~v~iRi~~~D~-- 216 (353)
T cd02930 139 FARCAALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAVGEDFIIIYRLSMLDL-- 216 (353)
T ss_pred HHHHHHHHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEeccccc--
Confidence 45556667889999999977 1 12346788887766777788899999999995 6776644433222
Q ss_pred CCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC-chHHHHHHHHHHCCCCCceeechhhh-hccccccc
Q 013861 227 DGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMD-GRVGAIRAALDAEGFQHVSIMSYTAK-YASSFYGP 304 (435)
Q Consensus 227 hGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMMD-GrVgAIR~aLD~~Gf~~v~IMSYSaK-yASafYGP 304 (435)
| ++| .+.++++ +.+-.+.++|+|.|.-|-.+. +++..+. .|.-+ +.-.++..
T Consensus 217 --~-----~~g-~~~~e~~----~i~~~Le~~G~d~i~vs~g~~e~~~~~~~--------------~~~~~~~~~~~~~~ 270 (353)
T cd02930 217 --V-----EGG-STWEEVV----ALAKALEAAGADILNTGIGWHEARVPTIA--------------TSVPRGAFAWATAK 270 (353)
T ss_pred --C-----CCC-CCHHHHH----HHHHHHHHcCCCEEEeCCCcCCCCCcccc--------------ccCCchhhHHHHHH
Confidence 1 112 3344544 444455789999998765431 2221000 01100 11123345
Q ss_pred chhhhcCCCCCCCccccCCCCCCHHHHHHHHHhccccc-ccEEecccCCCcccCCCchHHHHHHHHhhC
Q 013861 305 FREALDSNPRFGDKKTYQMNPANYREALVEAQADESEG-ADILLFSVLGSQVKPGLPYLDVIRLLRDKY 372 (435)
Q Consensus 305 FRdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EG-ADilM~~~~~~~VKPal~YLDIIr~vk~~~ 372 (435)
+|+++ +.|-.+.-.- -+| +-+.++ +++| +|+||+ =+|.+.-=|+++++++.-
T Consensus 271 ik~~v-~iPVi~~G~i--~~~----~~a~~~---i~~g~~D~V~~------gR~~l~dP~~~~k~~~g~ 323 (353)
T cd02930 271 LKRAV-DIPVIASNRI--NTP----EVAERL---LADGDADMVSM------ARPFLADPDFVAKAAAGR 323 (353)
T ss_pred HHHhC-CCCEEEcCCC--CCH----HHHHHH---HHCCCCChhHh------hHHHHHCccHHHHHHhCC
Confidence 56655 3454432111 112 222222 3444 999992 356666668889888753
No 272
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=49.34 E-value=2.7e+02 Score=27.46 Aligned_cols=178 Identities=20% Similarity=0.233 Sum_probs=97.0
Q ss_pred CCC-CHHHHHHHHHHHC---CCeEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC
Q 013861 195 DNG-LVPRTIWLLKDRY---PDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMD 270 (435)
Q Consensus 195 ~~g-~v~raIr~iK~~~---Pdl~IitDVcLc~YTshGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMMD 270 (435)
+|| +..+-+....++- --|+|.--+..++- ..++.+ .-.+.+|+.++.+.+.+-.--+.|+-+++
T Consensus 27 ~~g~~~~~~~~~y~~ra~gg~glii~e~~~v~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~vh~~g~~~~~------ 95 (327)
T cd02803 27 EDGTPTDELIEYYEERAKGGVGLIITEAAYVDPE-GKGYPG----QLGIYDDEQIPGLRKLTEAVHAHGAKIFA------ 95 (327)
T ss_pred CCCCCCHHHHHHHHHHhCcCCcEEEECcEEEcCc-ccCCCC----CcCcCCHHHHHHHHHHHHHHHhCCCHhhH------
Confidence 444 5667777777654 23554444445433 222111 22467899999999988777777876542
Q ss_pred chHHHHHHHHHHCCCCCceeechhhhhcccccccchhhhcCCCCCCCccccCCCCCCHHHHHHHHHhcc--------ccc
Q 013861 271 GRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADE--------SEG 342 (435)
Q Consensus 271 GrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~--------~EG 342 (435)
-|-..|.. +.........++| |+.. ....++++-+-..|-|.++..|. +-|
T Consensus 96 --------Ql~h~G~~-----~~~~~~~~~~~~~------s~~~--~~~~~~~~~~mt~~ei~~~i~~~~~aA~~a~~aG 154 (327)
T cd02803 96 --------QLAHAGRQ-----AQPNLTGGPPPAP------SAIP--SPGGGEPPREMTKEEIEQIIEDFAAAARRAKEAG 154 (327)
T ss_pred --------HhhCCCcC-----CCCcCCCCCccCC------CCCC--CCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 22222221 1100000011111 1111 12334444444444455444443 359
Q ss_pred ccEEecccCCCcccCCCch----------------------------HHHHHHHHhhC--CCCeEEEEechHHHHHHHHH
Q 013861 343 ADILLFSVLGSQVKPGLPY----------------------------LDVIRLLRDKY--PLPIAAYQVSGEYSMIKAGG 392 (435)
Q Consensus 343 ADilM~~~~~~~VKPal~Y----------------------------LDIIr~vk~~~--~lPvaaYqVSGEYaMikaAa 392 (435)
+|.|= +.-+..| ++||+.+|+.+ ++||.. -+|.+...
T Consensus 155 fDgve-------ih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~v-ris~~~~~----- 221 (327)
T cd02803 155 FDGVE-------IHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGV-RLSADDFV----- 221 (327)
T ss_pred CCEEE-------EcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEE-EechhccC-----
Confidence 99998 7777666 69999999988 677764 45543211
Q ss_pred HCCCCchhhHHHHHHHHHHHhcccEee
Q 013861 393 ALKMIDEQRVMMESLMCLRRAGADIIL 419 (435)
Q Consensus 393 ~~G~ide~~~v~Esl~~ikRAGAd~Ii 419 (435)
..| ++.+ -..|.+..+..+|+|+|-
T Consensus 222 ~~g-~~~~-e~~~la~~l~~~G~d~i~ 246 (327)
T cd02803 222 PGG-LTLE-EAIEIAKALEEAGVDALH 246 (327)
T ss_pred CCC-CCHH-HHHHHHHHHHHcCCCEEE
Confidence 123 3443 457788888889999984
No 273
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=49.28 E-value=1.6e+02 Score=26.82 Aligned_cols=93 Identities=15% Similarity=0.226 Sum_probs=53.8
Q ss_pred CCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCch-----HHHHHHHHhhC-CCCeEE--EEechHHHHHHHHHHC
Q 013861 323 MNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPY-----LDVIRLLRDKY-PLPIAA--YQVSGEYSMIKAGGAL 394 (435)
Q Consensus 323 mdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~Y-----LDIIr~vk~~~-~lPvaa--YqVSGEYaMikaAa~~ 394 (435)
+|.-|.++++. ....+.++.|++= =+.++ ++.|+.+|+.+ ++|+.+ +-...+-..++.+.+.
T Consensus 7 ~d~~~~~~~~~-~~~~l~~~i~~ie---------ig~~~~~~~g~~~i~~i~~~~~~~~i~~~~~v~~~~~~~~~~~~~a 76 (202)
T cd04726 7 LDLLDLEEALE-LAKKVPDGVDIIE---------AGTPLIKSEGMEAVRALREAFPDKIIVADLKTADAGALEAEMAFKA 76 (202)
T ss_pred EcCCCHHHHHH-HHHHhhhcCCEEE---------cCCHHHHHhCHHHHHHHHHHCCCCEEEEEEEeccccHHHHHHHHhc
Confidence 45566666555 5555666766644 36566 79999999874 799887 3233322234555565
Q ss_pred CC---C--ch--hhHHHHHHHHHHHhcccEee---hhcHHH
Q 013861 395 KM---I--DE--QRVMMESLMCLRRAGADIIL---TYFALQ 425 (435)
Q Consensus 395 G~---i--de--~~~v~Esl~~ikRAGAd~Ii---TYfA~~ 425 (435)
|. + ++ ...+-|.+..+++.|..+++ +..+++
T Consensus 77 Gad~i~~h~~~~~~~~~~~i~~~~~~g~~~~v~~~~~~t~~ 117 (202)
T cd04726 77 GADIVTVLGAAPLSTIKKAVKAAKKYGKEVQVDLIGVEDPE 117 (202)
T ss_pred CCCEEEEEeeCCHHHHHHHHHHHHHcCCeEEEEEeCCCCHH
Confidence 54 1 11 12344556666667777763 444433
No 274
>TIGR03550 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit. This model represents either a subunit or a domain, depending on whether or not the genes are fused, of a bifunctional protein that completes the synthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin, or FO. FO is the chromophore of coenzyme F(420), involved in methanogenesis in methanogenic archaea but found in certain other lineages as well. The chromophore also occurs as a cofactor in DNA photolyases in Cyanobacteria.
Probab=49.11 E-value=56 Score=32.89 Aligned_cols=115 Identities=15% Similarity=0.126 Sum_probs=64.1
Q ss_pred CceeechhhhHHHHHHHHHHcCCCeEEEe-ecCCCCCC-C----cccCcCcCC-CCCHHHHHHHHHHHCCCeEEEeeecc
Q 013861 149 GCYRLGWRHGLVQEVAKARDVGVNSVVLF-PKVPDALK-S----PTGDEAYND-NGLVPRTIWLLKDRYPDLVIYTDVAL 221 (435)
Q Consensus 149 Gv~r~s~~~~l~~~v~~~~~~GI~sv~LF-gvi~~~~K-d----~~Gs~A~~~-~g~v~raIr~iK~~~Pdl~IitDVcL 221 (435)
.-|+++.+ .++++++++.+.|++.++|= |.-|+ .+ + ...+.+++. -..+.+.++.||+.. ++.+ |
T Consensus 31 ~~~~l~~e-eI~~~a~~~~~~G~~ei~l~~G~~p~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~e~-~~~~----~- 102 (322)
T TIGR03550 31 EAALLSPE-EVLEILRKGAAAGCTEALFTFGEKPE-ERYPEAREWLAEMGYDSTLEYLRELCELALEET-GLLP----H- 102 (322)
T ss_pred ccccCCHH-HHHHHHHHHHHCCCCEEEEecCCCcc-ccHHHHHHHHHhcCCccHHHHHHHHHHHHHHhc-CCcc----c-
Confidence 45678886 59999999999999987764 54232 11 0 112233332 244567778887663 2211 1
Q ss_pred cCCCCCCcceeecCCCccccHHHHHHHHHHHHH---HHHc--------CCCeecCCCCCCchHHHHHHHHHHCCC
Q 013861 222 DPYSSDGHDGIVREDGVIMNDETVHQLCKQAVS---QARA--------GADVVSPSDMMDGRVGAIRAALDAEGF 285 (435)
Q Consensus 222 c~YTshGHcGIv~e~g~IdND~Tv~~Lak~Avs---~A~A--------GADiVAPSDMMDGrVgAIR~aLD~~Gf 285 (435)
-+-|. .+++.++.|.+..+. ..+. +.+.++|....+-|+..||.+- +.|+
T Consensus 103 ------~~~g~-------lt~e~l~~Lk~aG~~~~~~~Et~~~~l~~~~~~~~~p~k~~~~~l~~i~~a~-~~Gi 163 (322)
T TIGR03550 103 ------TNPGV-------MSRDELARLKPVNASMGLMLETTSERLCKGEAHYGSPGKDPAVRLETIEDAG-RLKI 163 (322)
T ss_pred ------cCCCC-------CCHHHHHHHHhhCCCCCcchhhhccccccccccCCCCCCCHHHHHHHHHHHH-HcCC
Confidence 11222 357777777654210 0111 3445666655566777777664 5665
No 275
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=49.10 E-value=48 Score=33.03 Aligned_cols=67 Identities=15% Similarity=0.159 Sum_probs=48.5
Q ss_pred cCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhC--CCCeEEEEechHHHHHHHHHHCCCCc
Q 013861 321 YQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKY--PLPIAAYQVSGEYSMIKAGGALKMID 398 (435)
Q Consensus 321 YQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~--~lPvaaYqVSGEYaMikaAa~~G~id 398 (435)
-..-..|.+|+.... +.|||+|| +-| .+.|-++++.+.. ++|+.| .|-|+
T Consensus 185 Igvev~s~eea~~A~----~~gaDyI~-------ld~--~~~e~l~~~~~~~~~~ipi~A---------------iGGI~ 236 (268)
T cd01572 185 IEVEVETLEQLKEAL----EAGADIIM-------LDN--MSPEELREAVALLKGRVLLEA---------------SGGIT 236 (268)
T ss_pred EEEEECCHHHHHHHH----HcCCCEEE-------ECC--cCHHHHHHHHHHcCCCCcEEE---------------ECCCC
Confidence 556667887765554 58999999 544 3679999888765 488765 56677
Q ss_pred hhhHHHHHHHHHHHhcccEeeh
Q 013861 399 EQRVMMESLMCLRRAGADIILT 420 (435)
Q Consensus 399 e~~~v~Esl~~ikRAGAd~IiT 420 (435)
.+ .+..+..+|+|.|-+
T Consensus 237 ~~-----ni~~~a~~Gvd~Iav 253 (268)
T cd01572 237 LE-----NIRAYAETGVDYISV 253 (268)
T ss_pred HH-----HHHHHHHcCCCEEEE
Confidence 54 445678899999865
No 276
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=48.74 E-value=2.9e+02 Score=28.23 Aligned_cols=55 Identities=20% Similarity=0.388 Sum_probs=40.3
Q ss_pred CcccCCCch---HHHHHHHHhhC-CCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEee
Q 013861 353 SQVKPGLPY---LDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIIL 419 (435)
Q Consensus 353 ~~VKPal~Y---LDIIr~vk~~~-~lPvaaYqVSGEYaMikaAa~~G~ide~~~v~Esl~~ikRAGAd~Ii 419 (435)
..|+|...| |++|+.+|+.. ++++.+--. -|+-..++-+.|+|.-++..|.|.+-
T Consensus 182 ~~vrr~~t~e~~Le~l~~ak~~~pgi~~~TgiI------------VGlGETeee~~etl~~Lrelg~d~v~ 240 (302)
T TIGR00510 182 PFVRPGATYRWSLKLLERAKEYLPNLPTKSGIM------------VGLGETNEEIKQTLKDLRDHGVTMVT 240 (302)
T ss_pred HHhCCCCCHHHHHHHHHHHHHhCCCCeecceEE------------EECCCCHHHHHHHHHHHHhcCCCEEE
Confidence 346666555 78888888876 577655443 56645567889999999999999864
No 277
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=48.65 E-value=24 Score=34.10 Aligned_cols=54 Identities=15% Similarity=0.360 Sum_probs=36.8
Q ss_pred CCCCCCHHHHHHHHHhccc-ccccEEecccCCCc-ccCCCchHHHHHHHHhhCCCCeEEE
Q 013861 322 QMNPANYREALVEAQADES-EGADILLFSVLGSQ-VKPGLPYLDVIRLLRDKYPLPIAAY 379 (435)
Q Consensus 322 Qmdp~N~~EAlre~~~D~~-EGADilM~~~~~~~-VKPal~YLDIIr~vk~~~~lPvaaY 379 (435)
.+||.-. |.+.+....+. -|+|.+| +-||+ |-+. .-.++++.+|+.+++||.-.
T Consensus 4 ~iDP~k~-e~~~~ia~~v~~~gtDaI~--VGGS~gvt~~-~~~~~v~~ik~~~~lPvilf 59 (205)
T TIGR01769 4 LIDPEKS-DEIEKIAKNAKDAGTDAIM--VGGSLGIVES-NLDQTVKKIKKITNLPVILF 59 (205)
T ss_pred ccCCCcH-HHHHHHHHHHHhcCCCEEE--EcCcCCCCHH-HHHHHHHHHHhhcCCCEEEE
Confidence 4788777 66766555555 5699999 33454 3221 23557899999999999864
No 278
>PLN02743 nicotinamidase
Probab=48.55 E-value=54 Score=32.21 Aligned_cols=83 Identities=18% Similarity=0.217 Sum_probs=56.4
Q ss_pred HHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHH---HHHHHHHHH-C--C--CeEEEeeecccCCCCCCcceeecCC
Q 013861 165 KARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVP---RTIWLLKDR-Y--P--DLVIYTDVALDPYSSDGHDGIVRED 236 (435)
Q Consensus 165 ~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~---raIr~iK~~-~--P--dl~IitDVcLc~YTshGHcGIv~e~ 236 (435)
.|.+.||+.+++.|+..+ .-|. -++|...+. | | +++|++|.|- .|+...|.+-.-++
T Consensus 145 ~Lr~~gI~~liv~Gv~T~--------------~CV~~~~sTardA~~~Gy~~~~~~V~Vv~DA~a-t~d~~~h~~~~~~~ 209 (239)
T PLN02743 145 WVNNNKIKVILVVGICTD--------------ICVLDFVASALSARNHGILPPLEDVVVYSRGCA-TYDLPLHVAKTIKG 209 (239)
T ss_pred HHHHCCCCEEEEEEeCcc--------------hhccChHHHHHHHHHcCCCCCCceEEEeCCccc-cCChhhhhhhhhcc
Confidence 467899999999997432 3332 344444444 5 2 7999999997 46788898865556
Q ss_pred CccccHHHHHHHHHHHHHHHHcCCCeec
Q 013861 237 GVIMNDETVHQLCKQAVSQARAGADVVS 264 (435)
Q Consensus 237 g~IdND~Tv~~Lak~Avs~A~AGADiVA 264 (435)
|.....++++.++--. ++..||.||.
T Consensus 210 ~~~~~~~~~~~~~~~~--~~~~~~~v~~ 235 (239)
T PLN02743 210 ALAHPQELMHHMGLYM--AKGRGAKVVS 235 (239)
T ss_pred ccCCCHHHHHHHHHHH--HHhCCcEeee
Confidence 7777788887765432 2345777764
No 279
>COG2040 MHT1 Homocysteine/selenocysteine methylase (S-methylmethionine-dependent) [Amino acid transport and metabolism]
Probab=47.85 E-value=15 Score=37.90 Aligned_cols=26 Identities=38% Similarity=0.525 Sum_probs=23.7
Q ss_pred CCCchhhHHHHHHHHHHHhcccEeeh
Q 013861 395 KMIDEQRVMMESLMCLRRAGADIILT 420 (435)
Q Consensus 395 G~ide~~~v~Esl~~ikRAGAd~IiT 420 (435)
=++|+.++|-|.+..|.|||||+|+|
T Consensus 37 ~l~~~peiv~~vh~df~~aGa~ii~T 62 (300)
T COG2040 37 ALVDEPEIVRNVHADFLRAGADIITT 62 (300)
T ss_pred hcccCHHHHHHHHHHHHHhcCcEEee
Confidence 36788999999999999999999986
No 280
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=47.77 E-value=39 Score=35.39 Aligned_cols=53 Identities=28% Similarity=0.545 Sum_probs=37.4
Q ss_pred cccccEEecccCCCcccCCCch----HHHHHHHHhhCC-CCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhc
Q 013861 340 SEGADILLFSVLGSQVKPGLPY----LDVIRLLRDKYP-LPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAG 414 (435)
Q Consensus 340 ~EGADilM~~~~~~~VKPal~Y----LDIIr~vk~~~~-lPvaaYqVSGEYaMikaAa~~G~ide~~~v~Esl~~ikRAG 414 (435)
+.|+|+|. |-=+.-| +|.|+.+|+.++ +||.+=+| .. .|....+.+||
T Consensus 118 ~agvD~iv-------ID~a~g~s~~~~~~ik~ik~~~~~~~viaGNV---------------~T-----~e~a~~L~~aG 170 (352)
T PF00478_consen 118 EAGVDVIV-------IDSAHGHSEHVIDMIKKIKKKFPDVPVIAGNV---------------VT-----YEGAKDLIDAG 170 (352)
T ss_dssp HTT-SEEE-------EE-SSTTSHHHHHHHHHHHHHSTTSEEEEEEE----------------S-----HHHHHHHHHTT
T ss_pred HcCCCEEE-------ccccCccHHHHHHHHHHHHHhCCCceEEeccc---------------CC-----HHHHHHHHHcC
Confidence 46999999 6544444 789999999997 99999998 12 23344577889
Q ss_pred ccEee
Q 013861 415 ADIIL 419 (435)
Q Consensus 415 Ad~Ii 419 (435)
||.|.
T Consensus 171 ad~vk 175 (352)
T PF00478_consen 171 ADAVK 175 (352)
T ss_dssp -SEEE
T ss_pred CCEEE
Confidence 99875
No 281
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=47.58 E-value=86 Score=31.96 Aligned_cols=48 Identities=21% Similarity=0.451 Sum_probs=33.0
Q ss_pred HHHHHHHHhcccccccEEeccc-CCCcccCCCchHHHHHHHHhhCC-CCeEEEE
Q 013861 329 REALVEAQADESEGADILLFSV-LGSQVKPGLPYLDVIRLLRDKYP-LPIAAYQ 380 (435)
Q Consensus 329 ~EAlre~~~D~~EGADilM~~~-~~~~VKPal~YLDIIr~vk~~~~-lPvaaYq 380 (435)
.+....+..-+++|+|+|.++. .|.. -..+|+|+.+|++++ +||.+=+
T Consensus 93 ~~~~~~~~~l~eagv~~I~vd~~~G~~----~~~~~~i~~ik~~~p~v~Vi~G~ 142 (325)
T cd00381 93 EDDKERAEALVEAGVDVIVIDSAHGHS----VYVIEMIKFIKKKYPNVDVIAGN 142 (325)
T ss_pred hhHHHHHHHHHhcCCCEEEEECCCCCc----HHHHHHHHHHHHHCCCceEEECC
Confidence 3445566666779999988432 2322 246899999999885 9998733
No 282
>PRK12383 putative mutase; Provisional
Probab=47.41 E-value=34 Score=36.48 Aligned_cols=75 Identities=23% Similarity=0.228 Sum_probs=50.4
Q ss_pred chhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCc---CcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcc
Q 013861 154 GWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDE---AYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHD 230 (435)
Q Consensus 154 s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~---A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTshGHc 230 (435)
+++.. ......+.+.|++.+.+ |++.+...-+.++. +.+.+..+.++++++|+..++++..-=+.+| ..||.
T Consensus 229 ~~~p~-~~v~~~l~~~G~~v~~V-GKi~Di~s~~G~t~~~~~~~t~~~~~~~l~aL~~~~~dlvfvnl~~~D---~~GH~ 303 (406)
T PRK12383 229 GVDPK-VQVPQKLYEAGVPVVLV-GKVADIVNNPYGVSWQNLVDTQRVMDITLDEFNTHPTAFICTNIQETD---LAGHA 303 (406)
T ss_pred CCCCc-chhhhHHHHcCCCEEEE-EEhHHeeccCCcccccccCCHHHHHHHHHHHHhcCCCCEEEEeccCCc---ccccc
Confidence 44433 44555678899998887 77654333344555 4566788999999999887887765555566 45887
Q ss_pred eee
Q 013861 231 GIV 233 (435)
Q Consensus 231 GIv 233 (435)
+-+
T Consensus 304 ~d~ 306 (406)
T PRK12383 304 EDV 306 (406)
T ss_pred CCH
Confidence 744
No 283
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=47.41 E-value=31 Score=35.66 Aligned_cols=84 Identities=21% Similarity=0.288 Sum_probs=61.3
Q ss_pred HHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCC--CCceeec-------------hhhhh-----ccccccc----
Q 013861 249 CKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGF--QHVSIMS-------------YTAKY-----ASSFYGP---- 304 (435)
Q Consensus 249 ak~Avs~A~AGADiVAPSDMMDGrVgAIR~aLD~~Gf--~~v~IMS-------------YSaKy-----ASafYGP---- 304 (435)
..++....++|.++|...|+ ..++-..++.||+.-- .+++|.+ |.... .=.|+||
T Consensus 74 ~~~~~~~L~aG~NVV~s~~~-h~~~p~~~~~ld~AAk~~g~vsvi~~GwDPG~~si~r~~~ea~lp~g~~yt~wG~g~s~ 152 (324)
T TIGR01921 74 IPEQAPYFAQFANTVDSFDN-HRDIPRHRQVMDAAAKAAGNVSVISTGWDPGMFSINRVYGEAVLPKGQTYTFWGPGLSQ 152 (324)
T ss_pred HHHHHHHHHcCCCEEECCCc-ccCCHHHHHHHHHHHHHcCCEEEEECCCCcChHHHHHHHHhccCCCCcceeccCCCcCc
Confidence 35666778999999999884 7777788888887643 3788876 22211 1258877
Q ss_pred -chhhhcCCCCCCCccccCCCCCCHHHHHHHHH
Q 013861 305 -FREALDSNPRFGDKKTYQMNPANYREALVEAQ 336 (435)
Q Consensus 305 -FRdA~~Sap~fgDRktYQmdp~N~~EAlre~~ 336 (435)
+.+|+..-+.-.|-..|.++ ..+||..+.
T Consensus 153 ghs~a~~~~~Gv~~a~~~tip---~~dal~~v~ 182 (324)
T TIGR01921 153 GHSDAVRRIDGVKKAVQYTLP---SEDALEKAR 182 (324)
T ss_pred hhhhhhcccCCcccceEEEEe---hHHHHHHHH
Confidence 67777777776678899998 788888887
No 284
>PLN02808 alpha-galactosidase
Probab=47.40 E-value=2e+02 Score=30.61 Aligned_cols=100 Identities=18% Similarity=0.176 Sum_probs=65.8
Q ss_pred HHHcCCCeEEEeecCCCC----CCCcccCcCcCC----CCCHHHHHHHHHHHCCCeEEEeeec--ccCCCCCCcceeecC
Q 013861 166 ARDVGVNSVVLFPKVPDA----LKSPTGDEAYND----NGLVPRTIWLLKDRYPDLVIYTDVA--LDPYSSDGHDGIVRE 235 (435)
Q Consensus 166 ~~~~GI~sv~LFgvi~~~----~Kd~~Gs~A~~~----~g~v~raIr~iK~~~Pdl~IitDVc--Lc~YTshGHcGIv~e 235 (435)
+.++|.+-|.| ++. ..|+.|.--.|+ +| +..-...|+++-=...|++|.- -|. .+|-|-
T Consensus 63 l~~~Gy~yv~i----Dd~W~~~~rd~~G~~~~d~~rFP~G-~~~lad~iH~~GlkfGiy~~~G~~tC~---~~~pGs--- 131 (386)
T PLN02808 63 LAALGYKYINL----DDCWAELKRDSQGNLVPKASTFPSG-IKALADYVHSKGLKLGIYSDAGTLTCS---KTMPGS--- 131 (386)
T ss_pred hHHhCCEEEEE----cCCcCCCCcCCCCCEeeChhhcCcc-HHHHHHHHHHCCCceEEEecCCccccC---CCCCcc---
Confidence 46777777776 221 356666654443 44 3345566777666788888853 221 123333
Q ss_pred CCccccHHHHHHHHHHHHHHHHcCCCee------cCCCCCCchHHHHHHHHHHCCC
Q 013861 236 DGVIMNDETVHQLCKQAVSQARAGADVV------SPSDMMDGRVGAIRAALDAEGF 285 (435)
Q Consensus 236 ~g~IdND~Tv~~Lak~Avs~A~AGADiV------APSDMMDGrVgAIR~aLD~~Gf 285 (435)
......-|-.+|+=|.|.| .|+..+..|+.++++||++.|-
T Consensus 132 ---------~~~e~~DA~~fA~WGvDylK~D~C~~~~~~~~~~y~~m~~AL~~tGR 178 (386)
T PLN02808 132 ---------LGHEEQDAKTFASWGIDYLKYDNCENTGTSPQERYPKMSKALLNSGR 178 (386)
T ss_pred ---------hHHHHHHHHHHHHhCCCEEeecCcCCCCccHHHHHHHHHHHHHHhCC
Confidence 3444555778999999987 3666788999999999999873
No 285
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=47.25 E-value=41 Score=32.86 Aligned_cols=46 Identities=15% Similarity=0.264 Sum_probs=35.2
Q ss_pred cccccEEecccCCCcccCCCchHHHHHHHHhhCCCCeEEEEechHHHHH
Q 013861 340 SEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMI 388 (435)
Q Consensus 340 ~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~~lPvaaYqVSGEYaMi 388 (435)
+.|||-|.+.-|..--.-..+-+++|+++.+...+|| |++|...-+
T Consensus 41 ~~g~~~l~i~Dl~~~~~~~~~n~~~i~~i~~~~~~pv---~~gGGi~s~ 86 (258)
T PRK01033 41 EKEVDELIVLDIDASKRGSEPNYELIENLASECFMPL---CYGGGIKTL 86 (258)
T ss_pred HcCCCEEEEEECCCCcCCCcccHHHHHHHHHhCCCCE---EECCCCCCH
Confidence 6799988876665554455678999999999999997 777765433
No 286
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=47.20 E-value=1.5e+02 Score=31.83 Aligned_cols=93 Identities=26% Similarity=0.384 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCcc
Q 013861 160 VQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVI 239 (435)
Q Consensus 160 ~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTshGHcGIv~e~g~I 239 (435)
.+.++.+++.|+. ++. +... ....--+...|+.||+.+|++.||+ |.|
T Consensus 230 ~e~a~~L~~agvd-viv---vD~a---------~g~~~~vl~~i~~i~~~~p~~~vi~-------------------g~v 277 (486)
T PRK05567 230 EERAEALVEAGVD-VLV---VDTA---------HGHSEGVLDRVREIKAKYPDVQIIA-------------------GNV 277 (486)
T ss_pred HHHHHHHHHhCCC-EEE---EECC---------CCcchhHHHHHHHHHhhCCCCCEEE-------------------ecc
Q ss_pred ccHHHHHHHHHHHHHHHHcCCCeecCCCCCCc--------------hHHHHHHHHHHCCCCCceeec
Q 013861 240 MNDETVHQLCKQAVSQARAGADVVSPSDMMDG--------------RVGAIRAALDAEGFQHVSIMS 292 (435)
Q Consensus 240 dND~Tv~~Lak~Avs~A~AGADiVAPSDMMDG--------------rVgAIR~aLD~~Gf~~v~IMS 292 (435)
.+-++...|. ++|||+|- ..+--| +..++.+..+...-.+++|++
T Consensus 278 ~t~e~a~~l~-------~aGad~i~-vg~g~gs~~~~r~~~~~g~p~~~~~~~~~~~~~~~~~~via 336 (486)
T PRK05567 278 ATAEAARALI-------EAGADAVK-VGIGPGSICTTRIVAGVGVPQITAIADAAEAAKKYGIPVIA 336 (486)
T ss_pred CCHHHHHHHH-------HcCCCEEE-ECCCCCccccceeecCCCcCHHHHHHHHHHHhccCCCeEEE
No 287
>PF01964 ThiC: ThiC family; InterPro: IPR002817 ThiC is found within the thiamin biosynthesis operon. ThiC is involved in thiamin biosynthesis []. The precise catalytic function of ThiC is still not known. ThiC participates in the formation of 4-Amino-5-hydroxymethyl-2-methylpyrimidine from AIR, an intermediate in the de novo pyrimidine biosynthesis.; GO: 0009228 thiamine biosynthetic process; PDB: 3EPO_A 3EPN_B 3EPM_B.
Probab=47.19 E-value=40 Score=36.33 Aligned_cols=96 Identities=19% Similarity=0.274 Sum_probs=53.6
Q ss_pred CCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHH-HHHhhCCCCeEEEEechHHHHHHHHHHCC--CCch-hh
Q 013861 326 ANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIR-LLRDKYPLPIAAYQVSGEYSMIKAGGALK--MIDE-QR 401 (435)
Q Consensus 326 ~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr-~vk~~~~lPvaaYqVSGEYaMikaAa~~G--~ide-~~ 401 (435)
.|.++=++.+..=++-|||-||--..| -=||=|| .+-+++++||+.--+ |... .+++ ..|. .+
T Consensus 73 ~d~~~E~~K~~~A~~~GADtvMDLStg-------gdl~~iR~~il~~~~vpvGTVPi---Yqa~---~~~~~~~~~~t~d 139 (420)
T PF01964_consen 73 SDIEEELEKLKIAEKAGADTVMDLSTG-------GDLDEIRRAILENSPVPVGTVPI---YQAA---IRKGGSIVDMTED 139 (420)
T ss_dssp --HHHHHHHHHHHHHTT-SEEEE---S-------TTHHHHHHHHHHT-SS-EEE-HH---HHHH---HHTTT-GGG--HH
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEcCCC-------CCHHHHHHHHHHhCCCccccchH---HHHH---HHhCCChhhCCHH
Confidence 366777888888899999999932222 2366666 456788999997332 2222 2232 2222 25
Q ss_pred HHHHHHHHHHHhcccEeehhc--HHHHHHHHhccC
Q 013861 402 VMMESLMCLRRAGADIILTYF--ALQAARCLCGEK 434 (435)
Q Consensus 402 ~v~Esl~~ikRAGAd~IiTYf--A~~~a~~L~~~~ 434 (435)
.++|.+.-=-+.|.|++--+. +++.+++|+.++
T Consensus 140 ~~~~~ie~qa~~GVDfmtiH~git~~~~~~~~~~~ 174 (420)
T PF01964_consen 140 DFFDVIEKQAKDGVDFMTIHCGITRETLERLKKSG 174 (420)
T ss_dssp HHHHHHHHHHHHT--EEEE-TT--GGGGGGGT--T
T ss_pred HHHHHHHHHHHcCCCEEEEccchhHHHHHHHhhhc
Confidence 788999888899999976554 355555555443
No 288
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=47.12 E-value=29 Score=35.90 Aligned_cols=57 Identities=28% Similarity=0.476 Sum_probs=47.1
Q ss_pred CCCcccCCCch---HHHHHHHHhhC-CCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEee
Q 013861 351 LGSQVKPGLPY---LDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIIL 419 (435)
Q Consensus 351 ~~~~VKPal~Y---LDIIr~vk~~~-~lPvaaYqVSGEYaMikaAa~~G~ide~~~v~Esl~~ikRAGAd~Ii 419 (435)
|--.|.|+-.| |++++.+|+.. .+|+ |.+...|+=..++-++|.|.-++.+|.|++-
T Consensus 186 L~~~VRp~A~Y~~SL~~L~~~k~~~P~i~T------------KSgiMlGLGEt~~Ev~e~m~DLr~~gvdilT 246 (306)
T COG0320 186 LYPRVRPGATYERSLSLLERAKELGPDIPT------------KSGLMVGLGETDEEVIEVMDDLRSAGVDILT 246 (306)
T ss_pred cccccCCCCcHHHHHHHHHHHHHhCCCccc------------ccceeeecCCcHHHHHHHHHHHHHcCCCEEE
Confidence 33458899888 99999999977 3654 6667788888888999999999999999863
No 289
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=47.10 E-value=78 Score=31.48 Aligned_cols=54 Identities=19% Similarity=0.233 Sum_probs=34.6
Q ss_pred CCCCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhCCCCeEEEEe
Q 013861 324 NPANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAAYQV 381 (435)
Q Consensus 324 dp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~~lPvaaYqV 381 (435)
+|....++++++. +.|+|.|.+.+ +.-++....-.++|+.+++.+++||.+=.|
T Consensus 127 ~~~~~~~~i~~~~---~~g~~~i~l~~-~~p~~~~~~~~~~i~~l~~~~~~pvivK~v 180 (299)
T cd02809 127 DREITEDLLRRAE---AAGYKALVLTV-DTPVLGRRLTWDDLAWLRSQWKGPLILKGI 180 (299)
T ss_pred CHHHHHHHHHHHH---HcCCCEEEEec-CCCCCCCCCCHHHHHHHHHhcCCCEEEeec
Confidence 3444455554443 46999988433 322222224569999999999999987655
No 290
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=46.97 E-value=56 Score=35.64 Aligned_cols=121 Identities=16% Similarity=0.286 Sum_probs=66.5
Q ss_pred CceeechhhhhcccccccchhhhcCCCCCCCccccCCCCCCHHHHHHHHHh-cccccccEEecccCCCcccCCCchHHHH
Q 013861 287 HVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQA-DESEGADILLFSVLGSQVKPGLPYLDVI 365 (435)
Q Consensus 287 ~v~IMSYSaKyASafYGPFRdA~~Sap~fgDRktYQmdp~N~~EAlre~~~-D~~EGADilM~~~~~~~VKPal~YLDII 365 (435)
.+..+||+- +..=|++.+ +.+.|+-...+-.++..+++..+.. =..+|+|+|+ =...--.+|
T Consensus 6 ~~~~~~~~~-----l~~~~~~i~---~~~~~~~~~~v~~~~~~~~~~~a~~~~~~~~~dviI---------srG~ta~~i 68 (526)
T TIGR02329 6 VIWTVSVSR-----LFDLFRDIA---PEFDHRANITPIQLGFEDAVREIRQRLGAERCDVVV---------AGGSNGAYL 68 (526)
T ss_pred EEEEEcHHH-----HHHHHHHHH---HhCCCCceEEEEeccHHHHHHHHHHHHHhCCCcEEE---------ECchHHHHH
Confidence 345556643 333344444 3444443344456788999998844 4478999999 122233444
Q ss_pred HHHHhhCCCCeEEEEechHHHHHHHHHH----------------------------CCC----CchhhHHHHHHHHHHHh
Q 013861 366 RLLRDKYPLPIAAYQVSGEYSMIKAGGA----------------------------LKM----IDEQRVMMESLMCLRRA 413 (435)
Q Consensus 366 r~vk~~~~lPvaaYqVSGEYaMikaAa~----------------------------~G~----ide~~~v~Esl~~ikRA 413 (435)
+ +.+++||.--+||| |-++++-.. ... +...+-+-+.+..+|+.
T Consensus 69 ~---~~~~iPVv~i~~s~-~Dil~al~~a~~~~~~ia~vg~~~~~~~~~~~~~ll~~~i~~~~~~~~~e~~~~~~~l~~~ 144 (526)
T TIGR02329 69 K---SRLSLPVIVIKPTG-FDVMQALARARRIASSIGVVTHQDTPPALRRFQAAFNLDIVQRSYVTEEDARSCVNDLRAR 144 (526)
T ss_pred H---HhCCCCEEEecCCh-hhHHHHHHHHHhcCCcEEEEecCcccHHHHHHHHHhCCceEEEEecCHHHHHHHHHHHHHC
Confidence 3 35566666666666 333333111 110 12233456777888888
Q ss_pred cccEeehh-cHHHHHH
Q 013861 414 GADIILTY-FALQAAR 428 (435)
Q Consensus 414 GAd~IiTY-fA~~~a~ 428 (435)
|.++||.- .+-++|+
T Consensus 145 G~~~viG~~~~~~~A~ 160 (526)
T TIGR02329 145 GIGAVVGAGLITDLAE 160 (526)
T ss_pred CCCEEECChHHHHHHH
Confidence 98888854 2334443
No 291
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=46.97 E-value=35 Score=34.17 Aligned_cols=57 Identities=18% Similarity=0.204 Sum_probs=41.2
Q ss_pred CceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEE
Q 013861 149 GCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIY 216 (435)
Q Consensus 149 Gv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~Ii 216 (435)
..|+++.+ .++++++++.+.|++.|.|-|-.++ .-+...+...++.||+.+|++-+.
T Consensus 68 ~~~~ls~e-ei~~~~~~~~~~G~~~i~l~gG~~p----------~~~~~~~~~li~~Ik~~~~~i~~~ 124 (340)
T TIGR03699 68 EGYVLSVE-EILQKIEELVAYGGTQILLQGGVNP----------DLGLDYYEDLFRAIKARFPHIHIH 124 (340)
T ss_pred cccCCCHH-HHHHHHHHHHHcCCcEEEEecCCCC----------CCCHHHHHHHHHHHHHHCCCcCCC
Confidence 34678886 6999999999999999988543111 112345667899999999887543
No 292
>PRK15381 pathogenicity island 2 effector protein SseJ; Provisional
Probab=46.84 E-value=40 Score=35.82 Aligned_cols=61 Identities=26% Similarity=0.465 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCc-----CcC-----CCCCHHHHHHHHHHHCCCeE-EEeee
Q 013861 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDE-----AYN-----DNGLVPRTIWLLKDRYPDLV-IYTDV 219 (435)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~-----A~~-----~~g~v~raIr~iK~~~Pdl~-IitDV 219 (435)
.+.+.+++|.++|.+.|+++++ |+--.-+.... .+| -|..+++.+..+++++|++- ++.|+
T Consensus 262 ~~~~~l~~Ly~lGARk~vV~nl-pPlGC~P~~~~~~~~~~~N~~a~~fN~~L~~~L~~L~~~~pg~~ivy~D~ 333 (408)
T PRK15381 262 QQIDDIEKIISGGVNNVLVMGI-PDLSLTPYGKHSDEKRKLKDESIAHNALLKTNVEELKEKYPQHKICYYET 333 (408)
T ss_pred HHHHHHHHHHHcCCcEEEEeCC-CCCCCcchhhccCchHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEEh
Confidence 4677889999999999999985 55333333211 111 35577788888999999854 45553
No 293
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=46.79 E-value=53 Score=33.43 Aligned_cols=172 Identities=16% Similarity=0.182 Sum_probs=95.0
Q ss_pred CChHHHhhhhcCCCCCC---------------CceeeEEEeeCCC-C---cccCCCCCceeechhhhHHHHHHHHHHcCC
Q 013861 111 KSPAMRASFQETNLSPA---------------NFVYPLFIHEGEE-D---TPIGAMPGCYRLGWRHGLVQEVAKARDVGV 171 (435)
Q Consensus 111 ~~~~~R~l~~Et~L~~~---------------~LI~PlFV~eg~~-~---~~I~sMPGv~r~s~~~~l~~~v~~~~~~GI 171 (435)
....+|+++++..|+.- .-..=+-+.++=+ . =.|+..-|-.+...+ ++.++++.+.+.|+
T Consensus 30 ~~~~~~~~~~~~~l~tvc~~a~cpn~~ec~~~~tatfm~i~~gC~~~C~FC~v~~~rg~~~~~~e-ei~~~a~~~~~~Gl 108 (302)
T TIGR00510 30 VIAQIKNTMKNKGLHTVCEEASCPNLTECWNHGTATFMILGDICTRRCPFCDVAHGRNPLPPDPE-EPAKLAETIKDMGL 108 (302)
T ss_pred hHHHHHHHHHHCCCceeecCCCCCCcccccCCCEEEEEecCcCcCCCCCcCCccCCCCCCCCCHH-HHHHHHHHHHHCCC
Confidence 35578888999887641 1222222334312 1 133333233334454 69999999999999
Q ss_pred CeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCccee---ecCCC---ccccHHHH
Q 013861 172 NSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGI---VREDG---VIMNDETV 245 (435)
Q Consensus 172 ~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTshGHcGI---v~e~g---~IdND~Tv 245 (435)
+.|+|=++--+++.| .| ..-+...|+.||+..|++.|=+ |.+. -.|-+.. +.+.| .--|-+|+
T Consensus 109 kevvLTsv~~ddl~d-~g------~~~l~~li~~I~~~~p~i~Iev---l~~d-~~g~~e~l~~l~~aG~dv~~hnlEt~ 177 (302)
T TIGR00510 109 KYVVITSVDRDDLED-GG------ASHLAECIEAIREKLPNIKIET---LVPD-FRGNIAALDILLDAPPDVYNHNLETV 177 (302)
T ss_pred CEEEEEeecCCCccc-cc------HHHHHHHHHHHHhcCCCCEEEE---eCCc-ccCCHHHHHHHHHcCchhhcccccch
Confidence 999998752122222 11 1247789999999999865432 1110 0121112 11111 11233444
Q ss_pred HHHHH------------HHHHHH-HcCCCeecCCCCCCch------HHHHHHHHHHCCCCCceeechh
Q 013861 246 HQLCK------------QAVSQA-RAGADVVSPSDMMDGR------VGAIRAALDAEGFQHVSIMSYT 294 (435)
Q Consensus 246 ~~Lak------------~Avs~A-~AGADiVAPSDMMDGr------VgAIR~aLD~~Gf~~v~IMSYS 294 (435)
..|.+ ..+..| +++-++..-||||=|- +...=+.|.+.|+..+.|--|-
T Consensus 178 ~~l~~~vrr~~t~e~~Le~l~~ak~~~pgi~~~TgiIVGlGETeee~~etl~~Lrelg~d~v~igqYl 245 (302)
T TIGR00510 178 ERLTPFVRPGATYRWSLKLLERAKEYLPNLPTKSGIMVGLGETNEEIKQTLKDLRDHGVTMVTLGQYL 245 (302)
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHhCCCCeecceEEEECCCCHHHHHHHHHHHHhcCCCEEEeeccc
Confidence 44332 233333 4445788889999874 3344456778899888888773
No 294
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=46.66 E-value=40 Score=33.01 Aligned_cols=106 Identities=24% Similarity=0.259 Sum_probs=62.8
Q ss_pred CCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCC--------CchHHHHHHHHHHCCCCCceeechhhhhcccccccch
Q 013861 235 EDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMM--------DGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFR 306 (435)
Q Consensus 235 e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMM--------DGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFR 306 (435)
+||.|| -+.++.++ --+.+.|+|-|.+...+ +=|...++.+.+..+ .+++|+.-.
T Consensus 15 ~dg~iD-~~~l~~~i---~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~-~~~~vi~gv------------ 77 (292)
T PRK03170 15 EDGSVD-FAALRKLV---DYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVN-GRVPVIAGT------------ 77 (292)
T ss_pred CCCCcC-HHHHHHHH---HHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhC-CCCcEEeec------------
Confidence 456665 33344443 34556899988765443 234555555555443 345555321
Q ss_pred hhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCch-------HHHHHHHHhhCCCCeEEE
Q 013861 307 EALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPY-------LDVIRLLRDKYPLPIAAY 379 (435)
Q Consensus 307 dA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~Y-------LDIIr~vk~~~~lPvaaY 379 (435)
-..|.+|++..++.=.+=|||.+| +=|-..| .+-.+++.+.+++||.-|
T Consensus 78 -----------------~~~~~~~~i~~a~~a~~~G~d~v~-------~~pP~~~~~~~~~i~~~~~~ia~~~~~pv~lY 133 (292)
T PRK03170 78 -----------------GSNSTAEAIELTKFAEKAGADGAL-------VVTPYYNKPTQEGLYQHFKAIAEATDLPIILY 133 (292)
T ss_pred -----------------CCchHHHHHHHHHHHHHcCCCEEE-------ECCCcCCCCCHHHHHHHHHHHHhcCCCCEEEE
Confidence 122558888877776667999999 6443322 333445667788999999
Q ss_pred Ee
Q 013861 380 QV 381 (435)
Q Consensus 380 qV 381 (435)
|.
T Consensus 134 n~ 135 (292)
T PRK03170 134 NV 135 (292)
T ss_pred EC
Confidence 84
No 295
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=46.57 E-value=39 Score=36.47 Aligned_cols=58 Identities=28% Similarity=0.371 Sum_probs=39.1
Q ss_pred ccccccEEecccCCCcccCCCchHHHHHHHHhhC-CCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccE
Q 013861 339 ESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADI 417 (435)
Q Consensus 339 ~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~-~lPvaaYqVSGEYaMikaAa~~G~ide~~~v~Esl~~ikRAGAd~ 417 (435)
+++|+|+|.+ -.++--| ...+|.|+.+|+++ ++||.+=+| .+ .|....+..||||+
T Consensus 234 v~aGVd~i~~--D~a~g~~-~~~~~~i~~i~~~~~~~~vi~g~~---------------~t-----~~~~~~l~~~G~d~ 290 (475)
T TIGR01303 234 LDAGVDVLVI--DTAHGHQ-VKMISAIKAVRALDLGVPIVAGNV---------------VS-----AEGVRDLLEAGANI 290 (475)
T ss_pred HHhCCCEEEE--eCCCCCc-HHHHHHHHHHHHHCCCCeEEEecc---------------CC-----HHHHHHHHHhCCCE
Confidence 3589999992 1222222 45699999999998 699998222 11 34445566789999
Q ss_pred ee
Q 013861 418 IL 419 (435)
Q Consensus 418 Ii 419 (435)
|-
T Consensus 291 i~ 292 (475)
T TIGR01303 291 IK 292 (475)
T ss_pred EE
Confidence 85
No 296
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=46.54 E-value=2.6e+02 Score=26.40 Aligned_cols=187 Identities=20% Similarity=0.196 Sum_probs=100.0
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCC
Q 013861 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDG 237 (435)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTshGHcGIv~e~g 237 (435)
..++.++.+.+.|++.+.+.= ||. +.+........|+.|.+.++ + |. ++ +|
T Consensus 33 ~~~e~a~~~~~~G~~~l~i~d------l~~----~~~~~~~~~~~i~~i~~~~~-~---------~l-------~v--~G 83 (241)
T PRK13585 33 DPVEVAKRWVDAGAETLHLVD------LDG----AFEGERKNAEAIEKIIEAVG-V---------PV-------QL--GG 83 (241)
T ss_pred CHHHHHHHHHHcCCCEEEEEe------chh----hhcCCcccHHHHHHHHHHcC-C---------cE-------EE--cC
Confidence 378999999999999987642 221 11122233556776666543 1 11 12 36
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCeec-CCCCCCchHHHHHHHHHHCCCCCceeechhhhhcccccccchhhhcCCCCCC
Q 013861 238 VIMNDETVHQLCKQAVSQARAGADVVS-PSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFG 316 (435)
Q Consensus 238 ~IdND~Tv~~Lak~Avs~A~AGADiVA-PSDMMDGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRdA~~Sap~fg 316 (435)
-|...+.++.+. ++|||.|. -+.++ -....+++..+.-|-+.+ +.|-+.|- |+.. + .|
T Consensus 84 Gi~~~~~~~~~~-------~~Ga~~v~iGs~~~-~~~~~~~~i~~~~g~~~i-~~sid~~~-----~~v~--~-----~g 142 (241)
T PRK13585 84 GIRSAEDAASLL-------DLGVDRVILGTAAV-ENPEIVRELSEEFGSERV-MVSLDAKD-----GEVV--I-----KG 142 (241)
T ss_pred CcCCHHHHHHHH-------HcCCCEEEEChHHh-hChHHHHHHHHHhCCCcE-EEEEEeeC-----CEEE--E-----CC
Confidence 666666665554 38998653 23232 123345666655554333 34444331 1111 0 02
Q ss_pred CccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCC
Q 013861 317 DKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKM 396 (435)
Q Consensus 317 DRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G~ 396 (435)
.+.+ .-.+..|..++. .+.|+|.|.+.-....=....+-+++|+++++..++||.+ .|-
T Consensus 143 ~~~~---~~~~~~~~~~~~---~~~G~~~i~~~~~~~~g~~~g~~~~~i~~i~~~~~iPvia---------------~GG 201 (241)
T PRK13585 143 WTEK---TGYTPVEAAKRF---EELGAGSILFTNVDVEGLLEGVNTEPVKELVDSVDIPVIA---------------SGG 201 (241)
T ss_pred Cccc---CCCCHHHHHHHH---HHcCCCEEEEEeecCCCCcCCCCHHHHHHHHHhCCCCEEE---------------eCC
Confidence 1111 012455555555 3689998884322111011235789999999999999875 333
Q ss_pred Cc-hhhHHHHHHHHHHHhcccEeeh
Q 013861 397 ID-EQRVMMESLMCLRRAGADIILT 420 (435)
Q Consensus 397 id-e~~~v~Esl~~ikRAGAd~IiT 420 (435)
+. .++ +..++++||+.++.
T Consensus 202 I~~~~d-----i~~~~~~Ga~gv~v 221 (241)
T PRK13585 202 VTTLDD-----LRALKEAGAAGVVV 221 (241)
T ss_pred CCCHHH-----HHHHHHcCCCEEEE
Confidence 33 333 23357789997653
No 297
>CHL00148 orf27 Ycf27; Reviewed
Probab=46.19 E-value=1.9e+02 Score=25.73 Aligned_cols=65 Identities=26% Similarity=0.292 Sum_probs=47.4
Q ss_pred CHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCc
Q 013861 327 NYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMID 398 (435)
Q Consensus 327 N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G~id 398 (435)
+..+++.... .+..|++++.. --|...-+++++.+++...+|+....-..++.....+.+.|..|
T Consensus 38 ~~~~~l~~~~---~~~~d~illd~----~~~~~~g~~~~~~l~~~~~~~ii~ls~~~~~~~~~~~~~~Ga~~ 102 (240)
T CHL00148 38 DGEEALKLFR---KEQPDLVILDV----MMPKLDGYGVCQEIRKESDVPIIMLTALGDVSDRITGLELGADD 102 (240)
T ss_pred CHHHHHHHHH---hcCCCEEEEeC----CCCCCCHHHHHHHHHhcCCCcEEEEECCCCHHhHHHHHHCCCCE
Confidence 5666666543 34579988211 13566778999999987789999988888888888888888765
No 298
>PRK02227 hypothetical protein; Provisional
Probab=46.11 E-value=82 Score=31.62 Aligned_cols=46 Identities=37% Similarity=0.458 Sum_probs=36.6
Q ss_pred CCCCCCHHHHHHHHHhcccccccEEecccCCCccc-CC-----CchHHHHHHHHhhCC--CCeEE
Q 013861 322 QMNPANYREALVEAQADESEGADILLFSVLGSQVK-PG-----LPYLDVIRLLRDKYP--LPIAA 378 (435)
Q Consensus 322 Qmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VK-Pa-----l~YLDIIr~vk~~~~--lPvaa 378 (435)
.+.|.|.+||.... +.|||||= || |. -.+.++|+++++..+ .||.|
T Consensus 4 LvSvr~~eEA~~Al----~~GaDiID-------vK~P~~GaLGA~~p~vir~Iv~~~~~~~pvSA 57 (238)
T PRK02227 4 LVSVRNLEEALEAL----AGGADIID-------VKNPKEGSLGANFPWVIREIVAAVPGRKPVSA 57 (238)
T ss_pred eeccCCHHHHHHHH----hcCCCEEE-------ccCCCCCCCCCCCHHHHHHHHHHhCCCCCcee
Confidence 46789999987765 67999999 87 43 368999999999875 77765
No 299
>cd01945 ribokinase_group_B Ribokinase-like subgroup B. Found in bacteria and plants, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time. .
Probab=46.06 E-value=1.1e+02 Score=28.74 Aligned_cols=36 Identities=36% Similarity=0.398 Sum_probs=28.1
Q ss_pred HHHHHHHHcCCCeecCCCCCCchHHH-HHHHHHHCCC
Q 013861 250 KQAVSQARAGADVVSPSDMMDGRVGA-IRAALDAEGF 285 (435)
Q Consensus 250 k~Avs~A~AGADiVAPSDMMDGrVgA-IR~aLD~~Gf 285 (435)
.+|+.+++-|.++..=|-+-+...+. |++.|.++|.
T Consensus 41 NvA~~l~~lG~~~~~~~~vG~D~~g~~i~~~l~~~gI 77 (284)
T cd01945 41 NAAVAVARLGGQARLIGVVGDDAIGRLILAELAAEGV 77 (284)
T ss_pred HHHHHHHHcCCCeEEEEEecCchHHHHHHHHHHHcCC
Confidence 46777888899887766666666654 8999999996
No 300
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=46.02 E-value=1.2e+02 Score=31.32 Aligned_cols=104 Identities=21% Similarity=0.313 Sum_probs=62.1
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCc--ccCcCcCCCCCHHHHHHHHHHHCC--CeEEEeeecccCCCCCCcceee
Q 013861 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSP--TGDEAYNDNGLVPRTIWLLKDRYP--DLVIYTDVALDPYSSDGHDGIV 233 (435)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~--~Gs~A~~~~g~v~raIr~iK~~~P--dl~IitDVcLc~YTshGHcGIv 233 (435)
.+...|+++.+.|+-.+-+==.+-+ +|.- .|.+-.+.+- ..+=|+++|+.-+ +++|++=+- ...
T Consensus 94 nvartV~~~~~aG~agi~iEDq~~p-k~cgh~~gk~l~~~~e-~v~rIkAa~~a~~~~~fvi~ARTd----------a~~ 161 (289)
T COG2513 94 NVARTVRELEQAGAAGIHIEDQVGP-KRCGHLPGKELVSIDE-MVDRIKAAVEARRDPDFVIIARTD----------ALL 161 (289)
T ss_pred HHHHHHHHHHHcCcceeeeeecccc-hhcCCCCCCCcCCHHH-HHHHHHHHHHhccCCCeEEEeehH----------HHH
Confidence 4788899999999998765111000 0100 1222222222 2345777777665 777775321 011
Q ss_pred cCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHC
Q 013861 234 REDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAE 283 (435)
Q Consensus 234 ~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMMDGrVgAIR~aLD~~ 283 (435)
. +| -|++++ -|..|.+||||+|-|-.|-| ...||+..+.-
T Consensus 162 ~-~~---ld~AI~----Ra~AY~eAGAD~if~~al~~--~e~i~~f~~av 201 (289)
T COG2513 162 V-EG---LDDAIE----RAQAYVEAGADAIFPEALTD--LEEIRAFAEAV 201 (289)
T ss_pred h-cc---HHHHHH----HHHHHHHcCCcEEccccCCC--HHHHHHHHHhc
Confidence 1 12 355555 47889999999999999999 77777766543
No 301
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=45.98 E-value=70 Score=30.24 Aligned_cols=93 Identities=20% Similarity=0.291 Sum_probs=66.1
Q ss_pred CCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhC-CCCeEEEEechHHHHHHHHHHCCCCc------
Q 013861 326 ANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMID------ 398 (435)
Q Consensus 326 ~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~-~lPvaaYqVSGEYaMikaAa~~G~id------ 398 (435)
.|..|++..+ .+...|++++.+ -=|++.-+|+++.+++++ +.+|..+-...+.+.+..+.+.|.--
T Consensus 33 ~~~~~~l~~~---~~~~pdvvl~Dl----~mP~~~G~e~~~~l~~~~p~~~vvvlt~~~~~~~v~~al~~Ga~Gyl~K~~ 105 (211)
T COG2197 33 SNGEEALDLA---RELKPDVVLLDL----SMPGMDGLEALKQLRARGPDIKVVVLTAHDDPAYVIRALRAGADGYLLKDA 105 (211)
T ss_pred CCHHHHHHHh---hhcCCCEEEEcC----CCCCCChHHHHHHHHHHCCCCcEEEEeccCCHHHHHHHHHcCCCEEEeCCC
Confidence 4577777662 246678887332 348899999999999777 58999999999999999988876532
Q ss_pred hhhHHHHHHHHHHHhcccEeehhcHHHHHHHH
Q 013861 399 EQRVMMESLMCLRRAGADIILTYFALQAARCL 430 (435)
Q Consensus 399 e~~~v~Esl~~ikRAGAd~IiTYfA~~~a~~L 430 (435)
....+.|++.+...-| +||.+++++-+
T Consensus 106 ~~~~l~~ai~~v~~G~-----~~~~~~~~~~~ 132 (211)
T COG2197 106 SPEELVEAIRAVAAGG-----TYLPPDIARKL 132 (211)
T ss_pred CHHHHHHHHHHHHCCC-----eEeCHHHHHHH
Confidence 1234566666655444 77877777654
No 302
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=45.76 E-value=1.1e+02 Score=29.40 Aligned_cols=86 Identities=21% Similarity=0.247 Sum_probs=57.5
Q ss_pred CCccccC------CCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhCCCCeEEEEechHHHHHH
Q 013861 316 GDKKTYQ------MNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIK 389 (435)
Q Consensus 316 gDRktYQ------mdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~~lPvaaYqVSGEYaMik 389 (435)
|++.+|+ ....|..|..+.-. +.|||-|-+--|-.- +-....+++|+++.+.+.+|+ ||-|
T Consensus 19 G~~~~~~p~~~~~~~~~dp~~~a~~~~---~~g~~~l~i~DLd~~-~~~~~n~~~i~~i~~~~~~~v---~vgG------ 85 (233)
T cd04723 19 GDRDNYRPITSNLCSTSDPLDVARAYK---ELGFRGLYIADLDAI-MGRGDNDEAIRELAAAWPLGL---WVDG------ 85 (233)
T ss_pred cChhhccccccCcccCCCHHHHHHHHH---HCCCCEEEEEeCccc-cCCCccHHHHHHHHHhCCCCE---EEec------
Confidence 6777776 44456666444444 459998886666443 466678999999999988886 4544
Q ss_pred HHHHCCCCchhhHHHHHHHHHHHhccc-EeehhcHH
Q 013861 390 AGGALKMIDEQRVMMESLMCLRRAGAD-IILTYFAL 424 (435)
Q Consensus 390 aAa~~G~ide~~~v~Esl~~ikRAGAd-~IiTYfA~ 424 (435)
|+=+ +|....+..+||+ +||..-+.
T Consensus 86 -----Gir~-----~edv~~~l~~Ga~~viigt~~~ 111 (233)
T cd04723 86 -----GIRS-----LENAQEWLKRGASRVIVGTETL 111 (233)
T ss_pred -----CcCC-----HHHHHHHHHcCCCeEEEcceec
Confidence 3322 6667777788988 44555443
No 303
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=45.72 E-value=1.4e+02 Score=29.46 Aligned_cols=93 Identities=22% Similarity=0.150 Sum_probs=55.7
Q ss_pred CCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCC
Q 013861 147 MPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSS 226 (435)
Q Consensus 147 MPGv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTs 226 (435)
.||+-.+.-+ -..+.++.+.+.|+..|-+|-.+.+ -..+.++|+..|+.. +.+.. |+| |+.
T Consensus 82 ~~~~~~~p~~-~~~~di~~~~~~g~~~iri~~~~~~-------------~~~~~~~i~~ak~~G--~~v~~--~i~-~~~ 142 (275)
T cd07937 82 LVGYRHYPDD-VVELFVEKAAKNGIDIFRIFDALND-------------VRNLEVAIKAVKKAG--KHVEG--AIC-YTG 142 (275)
T ss_pred ccCccCCCcH-HHHHHHHHHHHcCCCEEEEeecCCh-------------HHHHHHHHHHHHHCC--CeEEE--EEE-ecC
Confidence 4555445433 3677888999999999988753221 123456777777764 33333 332 111
Q ss_pred CCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCc
Q 013861 227 DGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDG 271 (435)
Q Consensus 227 hGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMMDG 271 (435)
. +. - |.+.+.+.+-...++|||.|.=.|++=.
T Consensus 143 ~---------~~-~---~~~~~~~~~~~~~~~Ga~~i~l~DT~G~ 174 (275)
T cd07937 143 S---------PV-H---TLEYYVKLAKELEDMGADSICIKDMAGL 174 (275)
T ss_pred C---------CC-C---CHHHHHHHHHHHHHcCCCEEEEcCCCCC
Confidence 1 11 1 3445555555567889999999998754
No 304
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=45.32 E-value=97 Score=31.98 Aligned_cols=94 Identities=24% Similarity=0.270 Sum_probs=55.9
Q ss_pred hhhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEeccc--CCCcccCCCc-----hHHHHHHHHhhCCCCeEE
Q 013861 306 REALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSV--LGSQVKPGLP-----YLDVIRLLRDKYPLPIAA 378 (435)
Q Consensus 306 RdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~--~~~~VKPal~-----YLDIIr~vk~~~~lPvaa 378 (435)
|+...+.|-+++=-..|..+.+.++ ++++...+ +||.+-+.+ .-..+.|... ++|+|+.+++..++||.+
T Consensus 115 r~~~p~~p~~aNl~~~~~~~~~~~~-~~~~~~~~--~adal~l~l~~~qe~~~p~g~~~f~~~le~i~~i~~~~~vPViv 191 (352)
T PRK05437 115 RKVAPDGLLFANLGAVQLYGYGVEE-AQRAVEMI--EADALQIHLNPLQELVQPEGDRDFRGWLDNIAEIVSALPVPVIV 191 (352)
T ss_pred HHHCCCceEEeecCccccCCCCHHH-HHHHHHhc--CCCcEEEeCccchhhcCCCCcccHHHHHHHHHHHHHhhCCCEEE
Confidence 4444344544444455665434444 55555555 577765332 1123445433 469999999999999995
Q ss_pred EEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEee
Q 013861 379 YQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIIL 419 (435)
Q Consensus 379 YqVSGEYaMikaAa~~G~ide~~~v~Esl~~ikRAGAd~Ii 419 (435)
=.+ | .|. -.|....+.++|+|.|.
T Consensus 192 K~~-g----------~g~------s~~~a~~l~~~Gvd~I~ 215 (352)
T PRK05437 192 KEV-G----------FGI------SKETAKRLADAGVKAID 215 (352)
T ss_pred EeC-C----------CCC------cHHHHHHHHHcCCCEEE
Confidence 443 3 121 14666778889999987
No 305
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=45.28 E-value=36 Score=35.45 Aligned_cols=91 Identities=15% Similarity=0.155 Sum_probs=54.8
Q ss_pred HHHHHHHHHcCCCeEEEeecCCCC-CCCcccCcCcCCCCCH---HHHHHHHHHHCCCeEEE---eeecccCCCCCCccee
Q 013861 160 VQEVAKARDVGVNSVVLFPKVPDA-LKSPTGDEAYNDNGLV---PRTIWLLKDRYPDLVIY---TDVALDPYSSDGHDGI 232 (435)
Q Consensus 160 ~~~v~~~~~~GI~sv~LFgvi~~~-~Kd~~Gs~A~~~~g~v---~raIr~iK~~~Pdl~Ii---tDVcLc~YTshGHcGI 232 (435)
.+.++.+++.|+..|.+|--+++. .|-..+ ...+-.+ .++|+..|+.. +.|. +..-=|||.
T Consensus 124 ~~die~A~~~g~~~v~i~~s~Sd~h~~~n~~---~t~~e~l~~~~~~v~~Ak~~G--l~v~~~is~~fg~p~~------- 191 (347)
T PLN02746 124 LKGFEAAIAAGAKEVAVFASASESFSKSNIN---CSIEESLVRYREVALAAKKHS--IPVRGYVSCVVGCPIE------- 191 (347)
T ss_pred HHHHHHHHHcCcCEEEEEEecCHHHHHHHhC---CCHHHHHHHHHHHHHHHHHcC--CeEEEEEEeeecCCcc-------
Confidence 577888999999999998654432 111111 1122223 35666666654 3332 222236662
Q ss_pred ecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC
Q 013861 233 VREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMD 270 (435)
Q Consensus 233 v~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMMD 270 (435)
|.+ +.+.|.+.+-...++|||.|.-.|+.=
T Consensus 192 ----~r~----~~~~l~~~~~~~~~~Gad~I~l~DT~G 221 (347)
T PLN02746 192 ----GPV----PPSKVAYVAKELYDMGCYEISLGDTIG 221 (347)
T ss_pred ----CCC----CHHHHHHHHHHHHHcCCCEEEecCCcC
Confidence 333 356666667777889999999999864
No 306
>PF02574 S-methyl_trans: Homocysteine S-methyltransferase; InterPro: IPR003726 S-methylmethionine: homocysteine methyltransferase 2.1.1.10 from EC from Escherichia coli accepts selenohomocysteine as a substrate. S-methylmethionine is an abundant plant product that can be utilised for methionine biosynthesis []. Human methionine synthase (5-methyltetrahydrofolate:L-homocysteine S-transmethylase; 2.1.1.13 from EC) shares 53 and 63% identity with the E. coli and the presumptive Caenorhabditis elegans proteins, respectively, and contains all residues implicated in B12 binding to the E. coli protein []. Betaine--homocysteine S-methyltransferase (2.1.1.5 from EC) converts betaine and homocysteine to dimethylglycine and methionine, respectively. This reaction is also required for the irreversible oxidation of choline [].; GO: 0008898 homocysteine S-methyltransferase activity; PDB: 1UMY_A 1LT8_B 1LT7_B 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B 1Q8J_B ....
Probab=45.19 E-value=15 Score=36.36 Aligned_cols=23 Identities=30% Similarity=0.263 Sum_probs=19.1
Q ss_pred hhhHHHHHHHHHHHhcccEeehh
Q 013861 399 EQRVMMESLMCLRRAGADIILTY 421 (435)
Q Consensus 399 e~~~v~Esl~~ikRAGAd~IiTY 421 (435)
..+.|.+.+..+.+||||+|.|.
T Consensus 39 ~p~~v~~iH~~yl~AGAdiI~Tn 61 (305)
T PF02574_consen 39 NPELVRQIHRDYLEAGADIITTN 61 (305)
T ss_dssp -HHHHHHHHHHHHHHT-SEEEEC
T ss_pred CHHHHHHHHHHHHHCCCCeEEec
Confidence 46899999999999999999863
No 307
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=44.95 E-value=42 Score=36.26 Aligned_cols=64 Identities=31% Similarity=0.419 Sum_probs=45.0
Q ss_pred HHHHHHHHhcccccccEEecccCCCcccCC---Cch-HHHHHHHHhhC-CCCeEEEEechHHHHHHHHHHCCCCchhhHH
Q 013861 329 REALVEAQADESEGADILLFSVLGSQVKPG---LPY-LDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMIDEQRVM 403 (435)
Q Consensus 329 ~EAlre~~~D~~EGADilM~~~~~~~VKPa---l~Y-LDIIr~vk~~~-~lPvaaYqVSGEYaMikaAa~~G~ide~~~v 403 (435)
.+.+..+..=++.|+|+|. |-++ ..+ +|.|+++|+.+ ++||.|=+| .+.
T Consensus 240 ~~~~~~~~~l~~ag~d~i~-------id~a~G~s~~~~~~i~~ik~~~~~~~v~aG~V---------------~t~---- 293 (495)
T PTZ00314 240 PEDIERAAALIEAGVDVLV-------VDSSQGNSIYQIDMIKKLKSNYPHVDIIAGNV---------------VTA---- 293 (495)
T ss_pred HHHHHHHHHHHHCCCCEEE-------EecCCCCchHHHHHHHHHHhhCCCceEEECCc---------------CCH----
Confidence 3456666666778999999 7663 223 79999999998 599988332 222
Q ss_pred HHHHHHHHHhcccEee
Q 013861 404 MESLMCLRRAGADIIL 419 (435)
Q Consensus 404 ~Esl~~ikRAGAd~Ii 419 (435)
|....+..||||.|.
T Consensus 294 -~~a~~~~~aGad~I~ 308 (495)
T PTZ00314 294 -DQAKNLIDAGADGLR 308 (495)
T ss_pred -HHHHHHHHcCCCEEE
Confidence 334456679999994
No 308
>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional
Probab=44.72 E-value=21 Score=36.91 Aligned_cols=52 Identities=25% Similarity=0.376 Sum_probs=32.2
Q ss_pred chHHHH-HHHHHHCCC-CCceee-----------chhhhhcccccccchhhhcCCC---CCCCccccCC
Q 013861 271 GRVGAI-RAALDAEGF-QHVSIM-----------SYTAKYASSFYGPFREALDSNP---RFGDKKTYQM 323 (435)
Q Consensus 271 GrVgAI-R~aLD~~Gf-~~v~IM-----------SYSaKyASafYGPFRdA~~Sap---~fgDRktYQm 323 (435)
||||.. -++|.+.+| .++-|+ +|--||.|.+ |.|..-+.+.- .|++++-...
T Consensus 10 GrIGR~~lr~l~e~~~~~~l~vvaind~~~~~~~ayll~ydS~h-g~~~~~v~~~~~~l~v~g~~i~v~ 77 (336)
T PRK13535 10 GRIGRNVLRALYESGRRAEITVVAINELADAEGMAHLLKYDTSH-GRFAWDVRQERDQLFVGDDAIRLL 77 (336)
T ss_pred CHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHhhhccCC-CCCCCcEEecCCEEEECCEEEEEE
Confidence 888742 333445544 455555 9999999985 99986665533 3555544333
No 309
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=44.71 E-value=86 Score=34.06 Aligned_cols=97 Identities=16% Similarity=0.256 Sum_probs=60.8
Q ss_pred CCCCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhCCCCeE-EEEech----------H-HHHHHHH
Q 013861 324 NPANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIA-AYQVSG----------E-YSMIKAG 391 (435)
Q Consensus 324 dp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~~lPva-aYqVSG----------E-YaMikaA 391 (435)
-..+.+|.+.++.....+|+|+|=+-+ ...+.... .+.+.++.+.+++|+. +|.-.. | ..+++.+
T Consensus 30 ~~~~~~e~~~~~~~~~~~~~D~vElRl--D~l~~~~~-~~~~~~~~~~~~~plI~T~R~~~eGG~~~~~~~~~~~ll~~~ 106 (529)
T PLN02520 30 MADSVDKMLIEMAKAKELGADLVEIRL--DFLKNFNP-REDLKTLIKQSPLPTLVTYRPKWEGGQYEGDENKRQDALRLA 106 (529)
T ss_pred CCCCHHHHHHHHHHhhhcCCCEEEEEe--ccccccCC-HHHHHHHHhcCCCcEEEEeccHHHCCCCCCCHHHHHHHHHHH
Confidence 345688888999888889999993100 00111111 3445555556677753 443221 2 3567878
Q ss_pred HHCC--CCchh----hHHHHHHHHHHHhcccEeehhcH
Q 013861 392 GALK--MIDEQ----RVMMESLMCLRRAGADIILTYFA 423 (435)
Q Consensus 392 a~~G--~ide~----~~v~Esl~~ikRAGAd~IiTYfA 423 (435)
++.| |+|-| +.+.+.+...++.|..+|++|+-
T Consensus 107 ~~~~~d~iDiEl~~~~~~~~~~~~~~~~~~~vI~S~H~ 144 (529)
T PLN02520 107 MELGADYVDVELKVAHEFINSISGKKPEKCKVIVSSHN 144 (529)
T ss_pred HHhCCCEEEEEcCCchhHHHHHHhhhhcCCEEEEEecC
Confidence 7776 44443 34667788888899999999884
No 310
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=44.33 E-value=2.2e+02 Score=31.23 Aligned_cols=155 Identities=17% Similarity=0.261 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHcCCCee--cCCCCCCchHHHHHHHHHHCCCCCceeechh-hhhc--------------------cc
Q 013861 244 TVHQLCKQAVSQARAGADVV--SPSDMMDGRVGAIRAALDAEGFQHVSIMSYT-AKYA--------------------SS 300 (435)
Q Consensus 244 Tv~~Lak~Avs~A~AGADiV--APSDMMDGrVgAIR~aLD~~Gf~~v~IMSYS-aKyA--------------------Sa 300 (435)
|++.=.++|-.+.++|.|.| .=+-+-.+-..++|+..+ .+..++-|++.+ ++-. -.
T Consensus 21 s~eeKl~Ia~~L~~~GVd~IE~G~p~~s~~d~~~v~~i~~-~~~~~~~i~~~~r~~r~~~~~~~d~~~ea~~~~~~~~v~ 99 (526)
T TIGR00977 21 SLEDKIRIAERLDDLGIHYIEGGWPGANPKDVQFFWQLKE-MNFKNAKIVAFCSTRRPHKKVEEDKMLQALIKAETPVVT 99 (526)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCCChHHHHHHHHHHH-hCCCCcEEEEEeeecCCCCCCchHHHHHHHhcCCCCEEE
Q ss_pred ccccc--------------------hhhhcCCCCCCCc---------cccCCCCCCHHHHHHHHHhcccccccEEecccC
Q 013861 301 FYGPF--------------------REALDSNPRFGDK---------KTYQMNPANYREALVEAQADESEGADILLFSVL 351 (435)
Q Consensus 301 fYGPF--------------------RdA~~Sap~fgDR---------ktYQmdp~N~~EAlre~~~D~~EGADilM~~~~ 351 (435)
+|.|- ++++.-+...|.+ ..|--||.-..|.++++. +-|||.|.+.--
T Consensus 100 i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~g~~V~~~~e~f~D~~r~~~~~l~~~~~~a~---~aGad~i~i~DT 176 (526)
T TIGR00977 100 IFGKSWDLHVLEALQTTLEENLAMIYDTVAYLKRQGDEVIYDAEHFFDGYKANPEYALATLATAQ---QAGADWLVLCDT 176 (526)
T ss_pred EEeCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeeeecccCCHHHHHHHHHHHH---hCCCCeEEEecC
Q ss_pred CCcccCCCchHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEe
Q 013861 352 GSQVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADII 418 (435)
Q Consensus 352 ~~~VKPal~YLDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G~ide~~~v~Esl~~ikRAGAd~I 418 (435)
-..--|. -+-++|+.++++++.|...+|- -=|.--++--+|.++ +|||+.|
T Consensus 177 vG~~~P~-~v~~li~~l~~~~~~~~i~vH~--------------HND~GlAvANslaAv-~AGA~~V 227 (526)
T TIGR00977 177 NGGTLPH-EISEITTKVKRSLKQPQLGIHA--------------HNDSGTAVANSLLAV-EAGATMV 227 (526)
T ss_pred CCCcCHH-HHHHHHHHHHHhCCCCEEEEEE--------------CCCCChHHHHHHHHH-HhCCCEE
No 311
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=44.22 E-value=2.3e+02 Score=28.96 Aligned_cols=112 Identities=12% Similarity=0.186 Sum_probs=62.7
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHC-CCeEEEeeecccCCCCC---------
Q 013861 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRY-PDLVIYTDVALDPYSSD--------- 227 (435)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~-Pdl~IitDVcLc~YTsh--------- 227 (435)
.+.++++++++.|.+.+-+ +| .+-|+++++.+ |++-++.|.+ .-||..
T Consensus 129 ~~~~~a~~~~~~Gf~~~Ki--Kv-------------------~~~v~avre~~G~~~~l~vDaN-~~w~~~~A~~~~~~l 186 (361)
T cd03322 129 ELLEAVERHLAQGYRAIRV--QL-------------------PKLFEAVREKFGFEFHLLHDVH-HRLTPNQAARFGKDV 186 (361)
T ss_pred HHHHHHHHHHHcCCCeEee--CH-------------------HHHHHHHHhccCCCceEEEECC-CCCCHHHHHHHHHHh
Confidence 5789999999999999886 21 44577777776 4666777775 445432
Q ss_pred Cccee--ecCCCccccHHHHHHHHH----------------HHHHHHH-cCCCeecCCCCCCchHHHHHHHHHHCCCCCc
Q 013861 228 GHDGI--VREDGVIMNDETVHQLCK----------------QAVSQAR-AGADVVSPSDMMDGRVGAIRAALDAEGFQHV 288 (435)
Q Consensus 228 GHcGI--v~e~g~IdND~Tv~~Lak----------------~Avs~A~-AGADiVAPSDMMDGrVgAIR~aLD~~Gf~~v 288 (435)
-..++ +.|--..++-+.+..|.+ ......+ -.+|++-|-=+--|=+...++..+-+--.++
T Consensus 187 ~~~~l~~iEeP~~~~d~~~~~~L~~~~~~pia~gE~~~~~~~~~~~i~~~a~di~~~d~~~~GGit~~~~ia~~A~~~gi 266 (361)
T cd03322 187 EPYRLFWMEDPTPAENQEAFRLIRQHTATPLAVGEVFNSIWDWQNLIQERLIDYIRTTVSHAGGITPARKIADLASLYGV 266 (361)
T ss_pred hhcCCCEEECCCCcccHHHHHHHHhcCCCCEEeccCCcCHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHcCC
Confidence 11222 211111122233333333 2222233 3599999988887866666665554322334
Q ss_pred eee
Q 013861 289 SIM 291 (435)
Q Consensus 289 ~IM 291 (435)
.+|
T Consensus 267 ~~~ 269 (361)
T cd03322 267 RTG 269 (361)
T ss_pred eee
Confidence 443
No 312
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=44.14 E-value=1.2e+02 Score=29.58 Aligned_cols=90 Identities=23% Similarity=0.310 Sum_probs=54.7
Q ss_pred HHHHHHHhccc-ccccEEecccCCCcccCC-------Cch---HHHHHHHHhh----CCCCeEEEEechHHHHHHHHHHC
Q 013861 330 EALVEAQADES-EGADILLFSVLGSQVKPG-------LPY---LDVIRLLRDK----YPLPIAAYQVSGEYSMIKAGGAL 394 (435)
Q Consensus 330 EAlre~~~D~~-EGADilM~~~~~~~VKPa-------l~Y---LDIIr~vk~~----~~lPvaaYqVSGEYaMikaAa~~ 394 (435)
++|++..+... .|.+=|+ -+-|...+++ .+| .|+|+.+|+. +.+-+++|-. |. -
T Consensus 73 ~~l~~~L~~~~~~Gi~~iL-~l~GD~~~~~~~~~~~~~~~~~a~~Li~~i~~~~~~~~~igva~yPe-~h---------p 141 (274)
T cd00537 73 IELQSILLGAHALGIRNIL-ALRGDPPKGGDQPGAKPVGFVYAVDLVELIRKENGGGFSIGVAAYPE-GH---------P 141 (274)
T ss_pred HHHHHHHHHHHHCCCCeEE-EeCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCCCccccccCCC-cC---------C
Confidence 55666655554 5888555 2347777665 333 7888888853 5567777751 11 0
Q ss_pred CCCchhhHHHHHHHHHHHhcccEeehhcH---HHHHHHHh
Q 013861 395 KMIDEQRVMMESLMCLRRAGADIILTYFA---LQAARCLC 431 (435)
Q Consensus 395 G~ide~~~v~Esl~~ikRAGAd~IiTYfA---~~~a~~L~ 431 (435)
..-| .+.-++.|..=..||||.|||=+- ..+.+|++
T Consensus 142 ~~~~-~~~~~~~L~~Ki~aGA~f~iTQ~~fd~~~~~~~~~ 180 (274)
T cd00537 142 EAPS-LEEDIKRLKRKVDAGADFIITQLFFDNDAFLRFVD 180 (274)
T ss_pred CCCC-HHHHHHHHHHHHHCCCCEEeecccccHHHHHHHHH
Confidence 1111 234567777777889999999543 44556764
No 313
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=43.71 E-value=65 Score=30.55 Aligned_cols=92 Identities=21% Similarity=0.247 Sum_probs=52.0
Q ss_pred HHHHHHHHHhcccccccEEecccCCCcccCCCch----------HHHHHHHHh-hCCCCeEEEEechHHHHHHHHHHCC-
Q 013861 328 YREALVEAQADESEGADILLFSVLGSQVKPGLPY----------LDVIRLLRD-KYPLPIAAYQVSGEYSMIKAGGALK- 395 (435)
Q Consensus 328 ~~EAlre~~~D~~EGADilM~~~~~~~VKPal~Y----------LDIIr~vk~-~~~lPvaaYqVSGEYaMikaAa~~G- 395 (435)
..++++++..-+++|||+|= +=+.--+|+... ..+|+.+++ .+++||.-=-- ....+++|.++|
T Consensus 18 ~~~a~~~a~~~~~~GAdiID--Ig~~st~p~~~~v~~~eE~~rl~~~l~~i~~~~~~~plSIDT~--~~~v~~~aL~~g~ 93 (210)
T PF00809_consen 18 EDEAVKRAREQVEAGADIID--IGAESTRPGATPVSEEEEMERLVPVLQAIREENPDVPLSIDTF--NPEVAEAALKAGA 93 (210)
T ss_dssp HHHHHHHHHHHHHTT-SEEE--EESSTSSTTSSSSHHHHHHHHHHHHHHHHHHHHTTSEEEEEES--SHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHhcCCEEE--ecccccCCCCCcCCHHHHHHHHHHHHHHHhccCCCeEEEEECC--CHHHHHHHHHcCc
Confidence 35688999999999999987 112223565555 456667776 67888875433 233444444443
Q ss_pred -CCchhhH---HHHHHHHHHHhcccEeehhcH
Q 013861 396 -MIDEQRV---MMESLMCLRRAGADIILTYFA 423 (435)
Q Consensus 396 -~ide~~~---v~Esl~~ikRAGAd~IiTYfA 423 (435)
|++.-.. .-+.+.-+++.|+.+|+.+.-
T Consensus 94 ~~ind~~~~~~~~~~~~l~a~~~~~vV~m~~~ 125 (210)
T PF00809_consen 94 DIINDISGFEDDPEMLPLAAEYGAPVVLMHSD 125 (210)
T ss_dssp SEEEETTTTSSSTTHHHHHHHHTSEEEEESES
T ss_pred ceEEecccccccchhhhhhhcCCCEEEEEecc
Confidence 2221111 223444556667777765543
No 314
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=43.50 E-value=39 Score=30.95 Aligned_cols=91 Identities=27% Similarity=0.444 Sum_probs=49.1
Q ss_pred CCCHHHHHHHHHhc-ccccccEEecccCCCcccCCCchHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCc-----
Q 013861 325 PANYREALVEAQAD-ESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMID----- 398 (435)
Q Consensus 325 p~N~~EAlre~~~D-~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G~id----- 398 (435)
-++.+||+..+..= +++|+|+++ =.-+ .. ..+|+.+++||.--++|| |-++++-.++....
T Consensus 16 ~~~~e~~v~~a~~~~~~~g~dViI-------sRG~--ta---~~lr~~~~iPVV~I~~s~-~Dil~al~~a~~~~~~Iav 82 (176)
T PF06506_consen 16 EASLEEAVEEARQLLESEGADVII-------SRGG--TA---ELLRKHVSIPVVEIPISG-FDILRALAKAKKYGPKIAV 82 (176)
T ss_dssp E--HHHHHHHHHHHHTTTT-SEEE-------EEHH--HH---HHHHCC-SS-EEEE---H-HHHHHHHHHCCCCTSEEEE
T ss_pred EecHHHHHHHHHHhhHhcCCeEEE-------ECCH--HH---HHHHHhCCCCEEEECCCH-hHHHHHHHHHHhcCCcEEE
Confidence 35778999888887 789999999 2222 22 234556677777777765 44444433333221
Q ss_pred ---------------------------hhhHHHHHHHHHHHhcccEeehh-cHHHHHH
Q 013861 399 ---------------------------EQRVMMESLMCLRRAGADIILTY-FALQAAR 428 (435)
Q Consensus 399 ---------------------------e~~~v~Esl~~ikRAGAd~IiTY-fA~~~a~ 428 (435)
..+-+-+.+..+++-|+|+||.- ++.++|+
T Consensus 83 v~~~~~~~~~~~~~~ll~~~i~~~~~~~~~e~~~~i~~~~~~G~~viVGg~~~~~~A~ 140 (176)
T PF06506_consen 83 VGYPNIIPGLESIEELLGVDIKIYPYDSEEEIEAAIKQAKAEGVDVIVGGGVVCRLAR 140 (176)
T ss_dssp EEESS-SCCHHHHHHHHT-EEEEEEESSHHHHHHHHHHHHHTT--EEEESHHHHHHHH
T ss_pred EecccccHHHHHHHHHhCCceEEEEECCHHHHHHHHHHHHHcCCcEEECCHHHHHHHH
Confidence 23345566777788899998864 4444544
No 315
>cd08555 PI-PLCc_GDPD_SF Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily. The PI-PLC-like phosphodiesterases superfamily represents the catalytic domains of bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13), eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11), glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria, as well as their uncharacterized homologs found in organisms ranging from bacteria and archaea to metazoans, plants, and fungi. PI-PLCs are ubiquitous enzymes hydrolyzing the membrane lipid phosphoinositides to yield two important second messengers, inositol phosphates and diacylglycerol (DAG). GP-GDEs play essential roles in glycerol metabolism and catalyze the hydrolysis of glycerophosph
Probab=43.46 E-value=1.5e+02 Score=27.04 Aligned_cols=42 Identities=19% Similarity=0.161 Sum_probs=31.5
Q ss_pred hHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEeehhc
Q 013861 361 YLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTYF 422 (435)
Q Consensus 361 YLDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G~ide~~~v~Esl~~ikRAGAd~IiTYf 422 (435)
.-++|.++++ .+++|.+|-|-- ..+.+..+.+.|+|.|+|-|
T Consensus 138 ~~~~v~~~~~-~g~~v~~wtvn~-------------------~~~~~~~l~~~Gvd~i~TD~ 179 (179)
T cd08555 138 DTELIASANK-LGLLSRIWTVND-------------------NNEIINKFLNLGVDGLITDF 179 (179)
T ss_pred CHHHHHHHHH-CCCEEEEEeeCC-------------------hHHHHHHHHHcCCCEEeCCC
Confidence 3466777776 689999999842 25566677788999999954
No 316
>PF04898 Glu_syn_central: Glutamate synthase central domain; InterPro: IPR006982 Glutamate synthase (GltS)1 is a key enzyme in the early stages of the assimilation of ammonia in bacteria, yeasts, and plants. In bacteria, L-glutamate is involved in osmoregulation, is the precursor for other amino acids, and can be the precursor for haem biosynthesis. In plants, GltS is especially essential in the reassimilation of ammonia released by photorespiration. On the basis of the amino acid sequence and the nature of the electron donor, three different classes of GltS can de defined as follows: 1) ferredoxin-dependent GltS (Fd-GltS), 2) NADPH-dependent GltS (NADPH-GltS), and 3) NADH-dependent GltS (properties of the three classes have been reviewed extensively []). The enzyme is a complex iron-sulphur flavoprotein catalysing the reductive transfer of the amido nitrogen from L-glutamine to 2-oxoglutarate to form two molecules of L-glutamate via intramolecular channelling of ammonia from the amidotransferase domain to the FMN-binding domain. Reaction of amidotransferase domain: L-glutamine + H2O = L-glutamate + NH3 Reactions of FMN-binding domain: 2-oxoglutarate + NH3 = 2-iminoglutarate + H2O 2e + FMNox = FMNred 2-iminoglutarate + FMNred = L-glutamate + FMNox The central domain of glutamate synthase connects the N-terminal amidotransferase domain with the FMN-binding domain and has an alpha/beta overall topology [].; GO: 0015930 glutamate synthase activity, 0006807 nitrogen compound metabolic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=43.25 E-value=45 Score=34.16 Aligned_cols=54 Identities=31% Similarity=0.503 Sum_probs=43.7
Q ss_pred cHHHHHHHHHHHHHHHHcCCCeecCCCCCCc--h--------HHHHHHHHHHCCC-CCceeechh
Q 013861 241 NDETVHQLCKQAVSQARAGADVVSPSDMMDG--R--------VGAIRAALDAEGF-QHVSIMSYT 294 (435)
Q Consensus 241 ND~Tv~~Lak~Avs~A~AGADiVAPSDMMDG--r--------VgAIR~aLD~~Gf-~~v~IMSYS 294 (435)
=.+.|++|+++|....+.|+.++--||---+ | |+++.+.|-++|. .+++|.-=|
T Consensus 137 L~~aL~~l~~ea~~Av~~G~~ilILsDr~~~~~~~~IP~lLAv~avh~~Li~~glR~~~slIves 201 (287)
T PF04898_consen 137 LEEALDRLCEEAEAAVREGANILILSDRNASPDRAPIPSLLAVSAVHHHLIREGLRTRVSLIVES 201 (287)
T ss_dssp HHHHHHHHHHHHHHHHHCT-SEEEEESTC-CTTEEE--HHHHHHHHHHHHHCTT-CCC-EEEEEE
T ss_pred HHHHHHHHHHHHHHHHHcCCcEEEECCCCCCcCcccccHHHHHHHHHHHHHHcCCcceeeEEEec
Confidence 4788999999999999999999999987543 3 8999999999999 889987544
No 317
>PRK09485 mmuM homocysteine methyltransferase; Provisional
Probab=43.11 E-value=20 Score=35.99 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=21.4
Q ss_pred CchhhHHHHHHHHHHHhcccEeeh
Q 013861 397 IDEQRVMMESLMCLRRAGADIILT 420 (435)
Q Consensus 397 ide~~~v~Esl~~ikRAGAd~IiT 420 (435)
++..+.|.+.+..+.+||||+|.|
T Consensus 42 ~~~Pe~V~~vH~~yl~AGadiI~T 65 (304)
T PRK09485 42 LENPELIYQVHLDYFRAGADCAIT 65 (304)
T ss_pred ccChHHHHHHHHHHHHhCCCEEEe
Confidence 567789999999999999999865
No 318
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=43.02 E-value=35 Score=31.04 Aligned_cols=48 Identities=17% Similarity=0.229 Sum_probs=38.0
Q ss_pred cHHHHHHHHHHHHHHHHcCCCeecCCCCCCchH---HHHHHHHHHCCCCCceee
Q 013861 241 NDETVHQLCKQAVSQARAGADVVSPSDMMDGRV---GAIRAALDAEGFQHVSIM 291 (435)
Q Consensus 241 ND~Tv~~Lak~Avs~A~AGADiVAPSDMMDGrV---gAIR~aLD~~Gf~~v~IM 291 (435)
.|-|.+.+.+.|..+ +||+|+=|.||-... ..+.+.|.++|..++.||
T Consensus 37 ~~v~~e~~v~aa~~~---~adiVglS~l~~~~~~~~~~~~~~l~~~gl~~~~vi 87 (134)
T TIGR01501 37 VLSPQEEFIKAAIET---KADAILVSSLYGHGEIDCKGLRQKCDEAGLEGILLY 87 (134)
T ss_pred CCCCHHHHHHHHHHc---CCCEEEEecccccCHHHHHHHHHHHHHCCCCCCEEE
Confidence 578888888888654 999999999997665 455678889998776554
No 319
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=42.99 E-value=48 Score=33.34 Aligned_cols=114 Identities=22% Similarity=0.291 Sum_probs=69.7
Q ss_pred CCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCC--------CchHHHHHHHHHHCCCCCceeechhhhhcccccccch
Q 013861 235 EDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMM--------DGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFR 306 (435)
Q Consensus 235 e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMM--------DGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFR 306 (435)
+||.||-|+ + .+..-.+.++|.|-|-+-+.. |=|...++.+.+..+ .+++|.+=
T Consensus 18 ~dg~vD~~a-~---~~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~-grvpviaG------------- 79 (299)
T COG0329 18 EDGSVDEEA-L---RRLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVG-GRVPVIAG------------- 79 (299)
T ss_pred CCCCcCHHH-H---HHHHHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHC-CCCcEEEe-------------
Confidence 357776443 3 333446778999966554332 335555666666555 35555432
Q ss_pred hhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCc-hHHHHHHHHhhCCCCeEEEEech
Q 013861 307 EALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLP-YLDVIRLLRDKYPLPIAAYQVSG 383 (435)
Q Consensus 307 dA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~-YLDIIr~vk~~~~lPvaaYqVSG 383 (435)
+ --.|.+||+.-++.=.+-|||-+| .+-=...||..- -.+=.+.+.+..++|+.-||+-+
T Consensus 80 --~--------------g~~~t~eai~lak~a~~~Gad~il-~v~PyY~k~~~~gl~~hf~~ia~a~~lPvilYN~P~ 140 (299)
T COG0329 80 --V--------------GSNSTAEAIELAKHAEKLGADGIL-VVPPYYNKPSQEGLYAHFKAIAEAVDLPVILYNIPS 140 (299)
T ss_pred --c--------------CCCcHHHHHHHHHHHHhcCCCEEE-EeCCCCcCCChHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence 1 124789999999998899999999 111112233310 04445677788899999999743
No 320
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=42.78 E-value=1.5e+02 Score=27.22 Aligned_cols=45 Identities=18% Similarity=0.409 Sum_probs=31.1
Q ss_pred CCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCch-----HHHHHHHHhhC-CCCeE
Q 013861 323 MNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPY-----LDVIRLLRDKY-PLPIA 377 (435)
Q Consensus 323 mdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~Y-----LDIIr~vk~~~-~lPva 377 (435)
+|--|.++|++-++. ++.|-|++= | ++++ +++|+.+|+.+ +.++.
T Consensus 6 lD~~~~~~a~~~~~~-l~~~v~~ie-------v--~~~l~~~~g~~~i~~l~~~~~~~~i~ 56 (206)
T TIGR03128 6 LDLLDIEEALELAEK-VADYVDIIE-------I--GTPLIKNEGIEAVKEMKEAFPDRKVL 56 (206)
T ss_pred ecCCCHHHHHHHHHH-cccCeeEEE-------e--CCHHHHHhCHHHHHHHHHHCCCCEEE
Confidence 577788888886664 477877654 3 4333 79999999986 44444
No 321
>PRK05927 hypothetical protein; Provisional
Probab=42.56 E-value=70 Score=33.08 Aligned_cols=87 Identities=21% Similarity=0.216 Sum_probs=56.1
Q ss_pred cccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCC---CchHHHHHHHHhhCC-CCeEEEEechHHHHHHHHHHC
Q 013861 319 KTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPG---LPYLDVIRLLRDKYP-LPIAAYQVSGEYSMIKAGGAL 394 (435)
Q Consensus 319 ktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPa---l~YLDIIr~vk~~~~-lPvaaYqVSGEYaMikaAa~~ 394 (435)
..|-|++ +|.+..+..-.+.|+.-+.+ +-| ..|. --|.|+|+.+|+.++ +-+-+|.-. |.+.+ +...
T Consensus 72 ~~y~ls~---eei~~~a~~~~~~G~~~i~i-~gG--~~p~~~~e~~~~~i~~ik~~~p~l~~~~~s~~-ei~~~--~~~~ 142 (350)
T PRK05927 72 DAYLLSF---DEFRSLMQRYVSAGVKTVLL-QGG--VHPQLGIDYLEELVRITVKEFPSLHPHFFSAV-EIAHA--AQVS 142 (350)
T ss_pred cccccCH---HHHHHHHHHHHHCCCCEEEE-eCC--CCCCCCHHHHHHHHHHHHHHCCCCcccCCCHH-HHHHH--HHhc
Confidence 4587755 66666666666779876664 333 3343 357899999999874 655554432 33322 3556
Q ss_pred CCCchhhHHHHHHHHHHHhcccEee
Q 013861 395 KMIDEQRVMMESLMCLRRAGADIIL 419 (435)
Q Consensus 395 G~ide~~~v~Esl~~ikRAGAd~Ii 419 (435)
|+.. -|.|..+|.||+|.+-
T Consensus 143 G~~~-----~e~l~~Lk~aGl~~l~ 162 (350)
T PRK05927 143 GIST-----EQALERLWDAGQRTIP 162 (350)
T ss_pred CCCH-----HHHHHHHHHcCcccCC
Confidence 7765 4678889999998544
No 322
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=42.46 E-value=2.7e+02 Score=29.74 Aligned_cols=162 Identities=22% Similarity=0.227 Sum_probs=85.0
Q ss_pred HHCCCeEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCCC
Q 013861 208 DRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQH 287 (435)
Q Consensus 208 ~~~Pdl~IitDVcLc~YTshGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMMDGrVgAIR~aLD~~Gf~~ 287 (435)
+..-|++|++=|-+.|= =++|.-+.+.-..|..+ ||++|+ +|+..
T Consensus 102 ~~~~~~~i~~~v~~~~~--------------~~d~~~~~~~ny~at~~-------------------ai~~a~--~~~p~ 146 (391)
T PRK13307 102 DKAEDLVIVASVFIHPT--------------AKDYNKIYQYNYGATKL-------------------AIKRAL--EGFPD 146 (391)
T ss_pred hhcCcEEEEEEEEcCch--------------hccHHHHHHHHHHHHHH-------------------HHHHHH--hCCCC
Confidence 34568999999998871 13566666666555554 355555 34433
Q ss_pred ceeechhhhhcccccccchhhhcCCCCCCCccc--cCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCch----
Q 013861 288 VSIMSYTAKYASSFYGPFREALDSNPRFGDKKT--YQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPY---- 361 (435)
Q Consensus 288 v~IMSYSaKyASafYGPFRdA~~Sap~fgDRkt--YQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~Y---- 361 (435)
+-=+=+--+-++.=+..||..=- -|+.- -=+|.-+.+||++=+. .+ .+.|..+ +|=|++.
T Consensus 147 ~~~~~~~~~~~~h~~~~~~~~~~-----~~~p~L~vALD~~~~~~A~~i~~-~l-~~~~~~~-------iKvG~~L~~~~ 212 (391)
T PRK13307 147 VDKVLYEKDRALHPIMGFKVTRL-----WDPPYLQVALDLPDLEEVERVLS-QL-PKSDHII-------IEAGTPLIKKF 212 (391)
T ss_pred HHHHHhhhhcccCCccccchhhh-----cccceEEEecCCCCHHHHHHHHH-hc-ccccceE-------EEECHHHHHHh
Confidence 33222222222222333443211 12222 2368889999887544 33 3333346 6767654
Q ss_pred -HHHHHHHHhh-CCCCeEEEE---echHHHHHHHHHHCCCC-------chhhHHHHHHHHHHHhcccEee
Q 013861 362 -LDVIRLLRDK-YPLPIAAYQ---VSGEYSMIKAGGALKMI-------DEQRVMMESLMCLRRAGADIIL 419 (435)
Q Consensus 362 -LDIIr~vk~~-~~lPvaaYq---VSGEYaMikaAa~~G~i-------de~~~v~Esl~~ikRAGAd~Ii 419 (435)
+++|+++|+. .+.|+.+=- =-|+|- ++.+++.|.= -....+.+.+..++..|..+++
T Consensus 213 G~~iVk~Lr~~~~~~~I~~DLK~~Di~~~v-v~~~a~aGAD~vTVH~ea~~~ti~~ai~~akk~GikvgV 281 (391)
T PRK13307 213 GLEVISKIREVRPDAFIVADLKTLDTGNLE-ARMAADATADAVVISGLAPISTIEKAIHEAQKTGIYSIL 281 (391)
T ss_pred CHHHHHHHHHhCCCCeEEEEecccChhhHH-HHHHHhcCCCEEEEeccCCHHHHHHHHHHHHHcCCEEEE
Confidence 8999999998 467776421 123332 3334444420 1122445555556656665555
No 323
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=42.42 E-value=1.3e+02 Score=29.95 Aligned_cols=109 Identities=18% Similarity=0.315 Sum_probs=68.4
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHH------------------HHHHHHHCCCeEEEeee
Q 013861 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRT------------------IWLLKDRYPDLVIYTDV 219 (435)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~ra------------------Ir~iK~~~Pdl~IitDV 219 (435)
...+.+..+.+.|+.-+=| | +| .-|+.+ ||++.|. ++.++++.+++=++.-.
T Consensus 27 ~~~~~~~~l~~~Gad~iEl-G-iP--fSDP~a------DGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~~~~~p~vlm~ 96 (258)
T PRK13111 27 TSLEIIKALVEAGADIIEL-G-IP--FSDPVA------DGPVIQAASLRALAAGVTLADVFELVREIREKDPTIPIVLMT 96 (258)
T ss_pred HHHHHHHHHHHCCCCEEEE-C-CC--CCCCcc------cCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEe
Confidence 5778888999999998877 6 35 355543 4555433 34444355664333221
Q ss_pred cccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCCCceeechhh
Q 013861 220 ALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTA 295 (435)
Q Consensus 220 cLc~YTshGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMMDGrVgAIR~aLD~~Gf~~v~IMSYSa 295 (435)
...+.-.. .++...+ ..+++|+|-|---|+-=......++++++.|+.-|.+++.++
T Consensus 97 Y~N~i~~~----------------G~e~f~~---~~~~aGvdGviipDLp~ee~~~~~~~~~~~gl~~I~lvap~t 153 (258)
T PRK13111 97 YYNPIFQY----------------GVERFAA---DAAEAGVDGLIIPDLPPEEAEELRAAAKKHGLDLIFLVAPTT 153 (258)
T ss_pred cccHHhhc----------------CHHHHHH---HHHHcCCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 11121111 1222333 346789987777788878999999999999998888887655
No 324
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=42.08 E-value=1.3e+02 Score=29.40 Aligned_cols=133 Identities=17% Similarity=0.204 Sum_probs=0.0
Q ss_pred ccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCCCceeechhhhhccccc--ccchhhhcCCCCCCC
Q 013861 240 MNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFY--GPFREALDSNPRFGD 317 (435)
Q Consensus 240 dND~Tv~~Lak~Avs~A~AGADiVAPSDMMDGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafY--GPFRdA~~Sap~fgD 317 (435)
.+++.++.||+.|..+ ||.-|.|-.+..+++-..- .+-+=+.--.-.+|
T Consensus 19 ~t~~~i~~~~~~A~~~----------------------------~~~avcv~p~~v~~a~~~l~~~~v~v~tVigFP~G- 69 (221)
T PRK00507 19 ATEEDIDKLCDEAKEY----------------------------GFASVCVNPSYVKLAAELLKGSDVKVCTVIGFPLG- 69 (221)
T ss_pred CCHHHHHHHHHHHHHh----------------------------CCeEEEECHHHHHHHHHHhCCCCCeEEEEecccCC-
Q ss_pred ccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhCCC--CeEEEEechHHHHHHHHHHCC
Q 013861 318 KKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPL--PIAAYQVSGEYSMIKAGGALK 395 (435)
Q Consensus 318 RktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~~l--PvaaYqVSGEYaMikaAa~~G 395 (435)
+....|.....+++..|=...-||++ -+|+.-.+. |-.+..++++-... |+..-=+ .+.+
T Consensus 70 ----~~~~~~K~~e~~~Ai~~GA~EiD~Vi--n~~~~~~g~--~~~v~~ei~~v~~~~~~~~lKvI----------lEt~ 131 (221)
T PRK00507 70 ----ANTTAVKAFEAKDAIANGADEIDMVI--NIGALKSGD--WDAVEADIRAVVEAAGGAVLKVI----------IETC 131 (221)
T ss_pred ----CChHHHHHHHHHHHHHcCCceEeeec--cHHHhcCCC--HHHHHHHHHHHHHhcCCceEEEE----------eecC
Q ss_pred CCchhhHHHHHHHHHHHhcccEeeh
Q 013861 396 MIDEQRVMMESLMCLRRAGADIILT 420 (435)
Q Consensus 396 ~ide~~~v~Esl~~ikRAGAd~IiT 420 (435)
.+++++. ........++|||+|=|
T Consensus 132 ~L~~e~i-~~a~~~~~~agadfIKT 155 (221)
T PRK00507 132 LLTDEEK-VKACEIAKEAGADFVKT 155 (221)
T ss_pred cCCHHHH-HHHHHHHHHhCCCEEEc
No 325
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=41.97 E-value=39 Score=32.69 Aligned_cols=70 Identities=19% Similarity=0.376 Sum_probs=49.2
Q ss_pred cccCCCCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEe--ee
Q 013861 142 TPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYT--DV 219 (435)
Q Consensus 142 ~~I~sMPGv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~Iit--DV 219 (435)
..|..+||+. -..|+..+++.|.+-|-|||- .. .|- +.-|+.||.-||++-++. -|
T Consensus 100 ~~i~~iPG~~-------TptEi~~A~~~Ga~~vKlFPA--~~----~GG---------~~yikal~~plp~i~~~ptGGV 157 (204)
T TIGR01182 100 HGIPIIPGVA-------TPSEIMLALELGITALKLFPA--EV----SGG---------VKMLKALAGPFPQVRFCPTGGI 157 (204)
T ss_pred cCCcEECCCC-------CHHHHHHHHHCCCCEEEECCc--hh----cCC---------HHHHHHHhccCCCCcEEecCCC
Confidence 4789999992 367899999999999999994 11 110 356899999999876663 12
Q ss_pred ---cccCCCCCCcceee
Q 013861 220 ---ALDPYSSDGHDGIV 233 (435)
Q Consensus 220 ---cLc~YTshGHcGIv 233 (435)
.+-+|-..|..++.
T Consensus 158 ~~~N~~~~l~aGa~~vg 174 (204)
T TIGR01182 158 NLANVRDYLAAPNVACG 174 (204)
T ss_pred CHHHHHHHHhCCCEEEE
Confidence 34455555655554
No 326
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=41.91 E-value=2.7e+02 Score=28.37 Aligned_cols=102 Identities=21% Similarity=0.274 Sum_probs=57.1
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcC---cCCCCCHHHHHHHHHHHC--CCeEEEeeecccCCCCCCccee
Q 013861 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEA---YNDNGLVPRTIWLLKDRY--PDLVIYTDVALDPYSSDGHDGI 232 (435)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A---~~~~g~v~raIr~iK~~~--Pdl~IitDVcLc~YTshGHcGI 232 (435)
.+...|+++.+.|+-.+.|==.+.+ +| +|... .-+-.-...-|++.++.. +|++|++=+ |.|..
T Consensus 89 ~v~~tv~~~~~aG~agi~IEDq~~p-K~--cgh~~g~~lv~~ee~~~kI~Aa~~a~~~~d~~IiART--Da~~~------ 157 (285)
T TIGR02317 89 NVARTVREMEDAGAAAVHIEDQVLP-KR--CGHLPGKELVSREEMVDKIAAAVDAKRDEDFVIIART--DARAV------ 157 (285)
T ss_pred HHHHHHHHHHHcCCeEEEEecCCCc-cc--cCCCCCccccCHHHHHHHHHHHHHhccCCCEEEEEEc--Ccccc------
Confidence 4778899999999999887111100 11 22211 111112334466666543 678887633 22311
Q ss_pred ecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC-chHHHHHHHH
Q 013861 233 VREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMD-GRVGAIRAAL 280 (435)
Q Consensus 233 v~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMMD-GrVgAIR~aL 280 (435)
.| =|+++++ +..|++||||+|-+-.+-+ -.+..+.+.+
T Consensus 158 ---~g---~deAI~R----a~ay~~AGAD~vfi~g~~~~e~i~~~~~~i 196 (285)
T TIGR02317 158 ---EG---LDAAIER----AKAYVEAGADMIFPEALTSLEEFRQFAKAV 196 (285)
T ss_pred ---cC---HHHHHHH----HHHHHHcCCCEEEeCCCCCHHHHHHHHHhc
Confidence 12 2566655 7889999999998766554 3344444443
No 327
>PLN02540 methylenetetrahydrofolate reductase
Probab=41.79 E-value=4.2e+02 Score=29.78 Aligned_cols=130 Identities=14% Similarity=0.269 Sum_probs=73.3
Q ss_pred CCCCceeechh----hhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcC-CCC---CHHHHHHHHHHHCCCeEEEe
Q 013861 146 AMPGCYRLGWR----HGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYN-DNG---LVPRTIWLLKDRYPDLVIYT 217 (435)
Q Consensus 146 sMPGv~r~s~~----~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~-~~g---~v~raIr~iK~~~Pdl~Iit 217 (435)
.++=|.+++.. ..|.+.+..+.++||+.|+...= |..++ |++ +. .+| -...-|+.||+.+.|- -
T Consensus 58 Gie~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILALrG--Dpp~~--~d~-~~~~~g~F~~A~dLV~~Ir~~~gd~---f 129 (565)
T PLN02540 58 CVETMMHLTCTNMPVEKIDHALETIKSNGIQNILALRG--DPPHG--QDK-FVQVEGGFACALDLVKHIRSKYGDY---F 129 (565)
T ss_pred CCCeeEEeeecCCCHHHHHHHHHHHHHCCCCEEEEECC--CCCCC--CCC-cCCCCCCcccHHHHHHHHHHhCCCC---c
Confidence 34555666542 24777888889999999977643 22222 111 10 011 1445677888887751 1
Q ss_pred eecccCCCCCCcceeecCCCcc---ccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchH-HHHHHHHHHCCCCCce
Q 013861 218 DVALDPYSSDGHDGIVREDGVI---MNDETVHQLCKQAVSQARAGADVVSPSDMMDGRV-GAIRAALDAEGFQHVS 289 (435)
Q Consensus 218 DVcLc~YTshGHcGIv~e~g~I---dND~Tv~~Lak~Avs~A~AGADiVAPSDMMDGrV-gAIR~aLD~~Gf~~v~ 289 (435)
++++--| -.||.-....++.+ +=+.-++.|. .-.+||||.+-.-=.-|-.. ....+.+.+.|. +++
T Consensus 130 ~IgVAGY-PEgHpe~~~~~~~~~~~~~~~dl~~Lk----~KvdAGAdFiITQlfFD~d~f~~f~~~~r~~Gi-~vP 199 (565)
T PLN02540 130 GITVAGY-PEAHPDVIGGDGLATPEAYQKDLAYLK----EKVDAGADLIITQLFYDTDIFLKFVNDCRQIGI-TCP 199 (565)
T ss_pred eEEEeCC-CCCCCcccccccccCCCChHHHHHHHH----HHHHcCCCEEeeccccCHHHHHHHHHHHHhcCC-CCC
Confidence 2334455 35887544221111 1113344443 44578999998888888665 566667777784 443
No 328
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=41.37 E-value=59 Score=32.02 Aligned_cols=82 Identities=18% Similarity=0.320 Sum_probs=52.4
Q ss_pred eeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcc
Q 013861 151 YRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHD 230 (435)
Q Consensus 151 ~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTshGHc 230 (435)
+|+..+ .+++.++++.+.|+..|.| +|..|. ..|.. +.+-++.+|+++|++ +..-|+|+
T Consensus 146 ~~~~~~-~~~~~~~~~~~~g~~~i~l--------~DT~G~--~~P~~-v~~lv~~l~~~~~~~---------~l~~H~Hn 204 (273)
T cd07941 146 YKANPE-YALATLKAAAEAGADWLVL--------CDTNGG--TLPHE-IAEIVKEVRERLPGV---------PLGIHAHN 204 (273)
T ss_pred CCCCHH-HHHHHHHHHHhCCCCEEEE--------ecCCCC--CCHHH-HHHHHHHHHHhCCCC---------eeEEEecC
Confidence 466664 4788889999999987654 334452 33333 557888999999873 23458886
Q ss_pred eeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCC
Q 013861 231 GIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPS 266 (435)
Q Consensus 231 GIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPS 266 (435)
-. | .=..-++.-.++|||+|--|
T Consensus 205 d~----G---------la~An~laA~~aGa~~id~s 227 (273)
T cd07941 205 DS----G---------LAVANSLAAVEAGATQVQGT 227 (273)
T ss_pred CC----C---------cHHHHHHHHHHcCCCEEEEe
Confidence 43 1 11223455568899988644
No 329
>PRK06256 biotin synthase; Validated
Probab=41.36 E-value=93 Score=31.01 Aligned_cols=72 Identities=24% Similarity=0.346 Sum_probs=43.0
Q ss_pred CHHHHHHHHHhcccccccEEecccCCCcccCCC----chHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhhH
Q 013861 327 NYREALVEAQADESEGADILLFSVLGSQVKPGL----PYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRV 402 (435)
Q Consensus 327 N~~EAlre~~~D~~EGADilM~~~~~~~VKPal----~YLDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G~ide~~~ 402 (435)
+.+|.+.++..=.+.|+.-+.+..-| -.|.. -++++++.+|+..++.+.+ | .|.+++
T Consensus 92 s~eeI~~~~~~~~~~g~~~~~l~~~g--~~p~~~~~~~~~e~i~~i~~~~~i~~~~---~-----------~g~l~~--- 152 (336)
T PRK06256 92 DIEELIEAAKEAIEEGAGTFCIVASG--RGPSGKEVDQVVEAVKAIKEETDLEICA---C-----------LGLLTE--- 152 (336)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEecC--CCCCchHHHHHHHHHHHHHhcCCCcEEe---c-----------CCcCCH---
Confidence 45666666665556788544322112 23433 5789999999886665543 2 355544
Q ss_pred HHHHHHHHHHhcccEee
Q 013861 403 MMESLMCLRRAGADIIL 419 (435)
Q Consensus 403 v~Esl~~ikRAGAd~Ii 419 (435)
|.+..+++||++.|.
T Consensus 153 --e~l~~LkeaG~~~v~ 167 (336)
T PRK06256 153 --EQAERLKEAGVDRYN 167 (336)
T ss_pred --HHHHHHHHhCCCEEe
Confidence 455668888887663
No 330
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=41.31 E-value=1.4e+02 Score=30.38 Aligned_cols=87 Identities=15% Similarity=0.129 Sum_probs=55.6
Q ss_pred ccCCCCCCHHHHHHHHHhcccccccEEecccCCCcc----cCC-C--------chHHHHHHHHhhCCCCeEEEEechHHH
Q 013861 320 TYQMNPANYREALVEAQADESEGADILLFSVLGSQV----KPG-L--------PYLDVIRLLRDKYPLPIAAYQVSGEYS 386 (435)
Q Consensus 320 tYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~V----KPa-l--------~YLDIIr~vk~~~~lPvaaYqVSGEYa 386 (435)
.-|+-=.+.++..+.+..=.+.|+|+|= --+|.-+ |.+ . .=.+|++.+++..++||.+.--
T Consensus 68 ~vQl~g~~~~~~~~aa~~~~~~g~d~Id-lN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~d~pv~vKiR----- 141 (321)
T PRK10415 68 TVQIAGSDPKEMADAARINVESGAQIID-INMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLKIR----- 141 (321)
T ss_pred EEEEeCCCHHHHHHHHHHHHHCCCCEEE-EeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhcCCceEEEEE-----
Confidence 3677555555544444332457899875 2334332 221 1 1267888999988999887655
Q ss_pred HHHHHHHCCCCchhhHHHHHHHHHHHhcccEee
Q 013861 387 MIKAGGALKMIDEQRVMMESLMCLRRAGADIIL 419 (435)
Q Consensus 387 MikaAa~~G~ide~~~v~Esl~~ikRAGAd~Ii 419 (435)
.||-+...-..|....+..+|+|.|.
T Consensus 142 -------~G~~~~~~~~~~~a~~le~~G~d~i~ 167 (321)
T PRK10415 142 -------TGWAPEHRNCVEIAQLAEDCGIQALT 167 (321)
T ss_pred -------ccccCCcchHHHHHHHHHHhCCCEEE
Confidence 57766544567888888999999874
No 331
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=41.29 E-value=1.6e+02 Score=28.64 Aligned_cols=84 Identities=18% Similarity=0.112 Sum_probs=52.2
Q ss_pred CCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHC
Q 013861 315 FGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGAL 394 (435)
Q Consensus 315 fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~ 394 (435)
.||+.+|+.--.|..|..+.-. + ..|||-|.+--|-.--.-...-+++|+++.+.+.+|+ ||-|
T Consensus 20 ~G~~~~~~~~~~dp~~~a~~~~-~-~~Ga~~l~ivDLd~a~~~~~~n~~~I~~i~~~~~~pi---~vGG----------- 83 (234)
T PRK13587 20 EGKYDSEEKMSRSAEESIAYYS-Q-FECVNRIHIVDLIGAKAQHAREFDYIKSLRRLTTKDI---EVGG----------- 83 (234)
T ss_pred cccCCCceEeCCCHHHHHHHHH-h-ccCCCEEEEEECcccccCCcchHHHHHHHHhhcCCeE---EEcC-----------
Confidence 3777777664446556333222 1 2599999866664433455578999999999889995 4433
Q ss_pred CCCchhhHHHHHHHHHHHhcccEee
Q 013861 395 KMIDEQRVMMESLMCLRRAGADIIL 419 (435)
Q Consensus 395 G~ide~~~v~Esl~~ikRAGAd~Ii 419 (435)
-+.. +|....+..+|||-++
T Consensus 84 -GIrs----~e~v~~~l~~Ga~kvv 103 (234)
T PRK13587 84 -GIRT----KSQIMDYFAAGINYCI 103 (234)
T ss_pred -CcCC----HHHHHHHHHCCCCEEE
Confidence 2322 3444455567888765
No 332
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=41.28 E-value=1.6e+02 Score=27.29 Aligned_cols=106 Identities=13% Similarity=0.189 Sum_probs=66.7
Q ss_pred CChHHHhhhhcCCCCCCCceeeEEEeeCCC--Ccc--------cCCCCCceeech--hhhHHHHHHHHHHcCCCeEEE-e
Q 013861 111 KSPAMRASFQETNLSPANFVYPLFIHEGEE--DTP--------IGAMPGCYRLGW--RHGLVQEVAKARDVGVNSVVL-F 177 (435)
Q Consensus 111 ~~~~~R~l~~Et~L~~~~LI~PlFV~eg~~--~~~--------I~sMPGv~r~s~--~~~l~~~v~~~~~~GI~sv~L-F 177 (435)
.+..+|.+++... ++-+.-|.++.+... ... =...|=+.+++- .+.+.+.++.+.+.|...|-| +
T Consensus 11 ~~~~fR~l~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~qi~g~~~~~~~~aa~~~~~aG~d~ieln~ 88 (231)
T cd02801 11 TDLPFRLLCRRYG--ADLVYTEMISAKALLRGNRKRLRLLTRNPEERPLIVQLGGSDPETLAEAAKIVEELGADGIDLNM 88 (231)
T ss_pred cCHHHHHHHHHHC--CCEEEecCEEEhhhhhcCHHHHHhhccCccCCCEEEEEcCCCHHHHHHHHHHHHhcCCCEEEEeC
Confidence 4567788877755 333333555544321 110 022232334421 134677777888889999988 4
Q ss_pred ecCCC--CCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeec
Q 013861 178 PKVPD--ALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVA 220 (435)
Q Consensus 178 gvi~~--~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVc 220 (435)
|- |. ..+|+.|+...+.-.++...++.+++..+ +-|..++.
T Consensus 89 g~-p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~-~~v~vk~r 131 (231)
T cd02801 89 GC-PSPKVTKGGAGAALLKDPELVAEIVRAVREAVP-IPVTVKIR 131 (231)
T ss_pred CC-CHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcC-CCEEEEEe
Confidence 43 32 35788999888888889999999999887 55566654
No 333
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=41.27 E-value=51 Score=31.95 Aligned_cols=90 Identities=20% Similarity=0.209 Sum_probs=51.3
Q ss_pred CCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCC
Q 013861 147 MPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSS 226 (435)
Q Consensus 147 MPGv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTs 226 (435)
.+...|++.+ .+++.++++.+.|+..|.| +|..|. ..|+. +.+-++.+|+.+| + +..-
T Consensus 130 ~~~~~~~~~~-~~~~~~~~~~~~G~~~i~l--------~DT~G~--~~P~~-v~~lv~~l~~~~~-~---------~l~~ 187 (259)
T cd07939 130 AEDASRADPD-FLIEFAEVAQEAGADRLRF--------ADTVGI--LDPFT-TYELIRRLRAATD-L---------PLEF 187 (259)
T ss_pred eccCCCCCHH-HHHHHHHHHHHCCCCEEEe--------CCCCCC--CCHHH-HHHHHHHHHHhcC-C---------eEEE
Confidence 3455566664 4777888888888876544 333442 22222 4456777777776 2 3345
Q ss_pred CCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCc
Q 013861 227 DGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDG 271 (435)
Q Consensus 227 hGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMMDG 271 (435)
|+|+-. | +. ..-++.-.++|||+|=-|=.-=|
T Consensus 188 H~Hn~~----G-------la--~An~laAi~aG~~~vd~s~~G~G 219 (259)
T cd07939 188 HAHNDL----G-------LA--TANTLAAVRAGATHVSVTVNGLG 219 (259)
T ss_pred EecCCC----C-------hH--HHHHHHHHHhCCCEEEEeccccc
Confidence 777532 1 11 12345556899998865544333
No 334
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=41.17 E-value=27 Score=34.61 Aligned_cols=46 Identities=33% Similarity=0.507 Sum_probs=32.5
Q ss_pred CHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhCCCCeEEE
Q 013861 327 NYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAAY 379 (435)
Q Consensus 327 N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~~lPvaaY 379 (435)
+..+++..+ .+.|+|.+| |-||+ ....+=.++..+|+.+++|+.-.
T Consensus 20 ~~~~~~~~~---~~~gtDai~--VGGS~--~~~~~d~vv~~ik~~~~lPvilf 65 (230)
T PF01884_consen 20 NPEEALEAA---CESGTDAII--VGGSD--TGVTLDNVVALIKRVTDLPVILF 65 (230)
T ss_dssp -HHHHHHHH---HCTT-SEEE--EE-ST--HCHHHHHHHHHHHHHSSS-EEEE
T ss_pred CcHHHHHHH---HhcCCCEEE--ECCCC--CccchHHHHHHHHhcCCCCEEEe
Confidence 556666555 789999999 77777 55567778888888899998754
No 335
>PRK08445 hypothetical protein; Provisional
Probab=41.14 E-value=1.2e+02 Score=31.28 Aligned_cols=89 Identities=20% Similarity=0.222 Sum_probs=53.8
Q ss_pred cccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhCC-CCeEEEEechHHHHHHHHHHCCCC
Q 013861 319 KTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYP-LPIAAYQVSGEYSMIKAGGALKMI 397 (435)
Q Consensus 319 ktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~~-lPvaaYqVSGEYaMikaAa~~G~i 397 (435)
..|-|++.-..+.+++ -.+.|++=+.++.=.....|---|+++++.+|+.++ +-+.+|.- +| +...+..+-+
T Consensus 69 ~~y~l~~eeI~~~~~~---a~~~g~~~i~~~gg~~~~~~~e~~~~l~~~Ik~~~p~i~~~a~s~-~e---i~~~a~~~~~ 141 (348)
T PRK08445 69 DAYILSFEEIDKKIEE---LLAIGGTQILFQGGVHPKLKIEWYENLVSHIAQKYPTITIHGFSA-VE---IDYIAKISKI 141 (348)
T ss_pred CCeeCCHHHHHHHHHH---HHHcCCCEEEEecCCCCCCCHHHHHHHHHHHHHHCCCcEEEEccH-HH---HHHHHHHhCC
Confidence 5787766444444444 345778766643311223445567999999999995 77766643 22 2322332222
Q ss_pred chhhHHHHHHHHHHHhcccEe
Q 013861 398 DEQRVMMESLMCLRRAGADII 418 (435)
Q Consensus 398 de~~~v~Esl~~ikRAGAd~I 418 (435)
. .-|.|..+|.||.|-+
T Consensus 142 ~----~~e~L~~LkeAGl~~~ 158 (348)
T PRK08445 142 S----IKEVLERLQAKGLSSI 158 (348)
T ss_pred C----HHHHHHHHHHcCCCCC
Confidence 2 1468889999999965
No 336
>PRK07729 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=41.09 E-value=16 Score=37.96 Aligned_cols=52 Identities=25% Similarity=0.468 Sum_probs=33.6
Q ss_pred chHHH--HHHHHHHCCCCCce--------eechhhhhcccccccchhhhc---CCCCCCCccccCC
Q 013861 271 GRVGA--IRAALDAEGFQHVS--------IMSYTAKYASSFYGPFREALD---SNPRFGDKKTYQM 323 (435)
Q Consensus 271 GrVgA--IR~aLD~~Gf~~v~--------IMSYSaKyASafYGPFRdA~~---Sap~fgDRktYQm 323 (435)
||||. +|.+|...+++=|. .|+|--||=|.+ |+|..-+. ....|++++-...
T Consensus 11 GRIGR~~~r~~~~~~~~~vvaINd~~~~~~~ayll~yDS~h-G~~~~~v~~~~~~l~v~g~~I~v~ 75 (343)
T PRK07729 11 GRIGRMVFRKAIKESAFEIVAINASYPSETLAHLIKYDTVH-GKFDGTVEAFEDHLLVDGKKIRLL 75 (343)
T ss_pred ChHHHHHHHHHhhcCCcEEEEecCCCCHHHHHHHhhhccCC-CCCCCcEEecCCEEEECCEEEEEE
Confidence 77774 46666544444333 589999999975 99985553 3344666765555
No 337
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=40.96 E-value=43 Score=32.71 Aligned_cols=107 Identities=24% Similarity=0.348 Sum_probs=69.2
Q ss_pred cCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCC--------CchHHHHHHHHHHCCCCCceeechhhhhcccccccc
Q 013861 234 REDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMM--------DGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPF 305 (435)
Q Consensus 234 ~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMM--------DGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPF 305 (435)
++||.||- +.++.+. -.+.++|+|-+...+.+ +=|..-++.+.+..+ .+++|+.=..
T Consensus 14 ~~dg~id~-~~~~~~i---~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~-~~~~vi~gv~---------- 78 (289)
T PF00701_consen 14 NADGSIDE-DALKRLI---DFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAA-GRVPVIAGVG---------- 78 (289)
T ss_dssp ETTSSB-H-HHHHHHH---HHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHT-TSSEEEEEEE----------
T ss_pred CCCcCcCH-HHHHHHH---HHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHcc-CceEEEecCc----------
Confidence 45677763 3333333 34557899988776643 235556666676665 4677765422
Q ss_pred hhhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCch-------HHHHHHHHhhCCCCeEE
Q 013861 306 REALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPY-------LDVIRLLRDKYPLPIAA 378 (435)
Q Consensus 306 RdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~Y-------LDIIr~vk~~~~lPvaa 378 (435)
..+.+|++..++.=.+-|||.+| |=|-..| .|=.+.+.+.+++|+..
T Consensus 79 -------------------~~st~~~i~~a~~a~~~Gad~v~-------v~~P~~~~~s~~~l~~y~~~ia~~~~~pi~i 132 (289)
T PF00701_consen 79 -------------------ANSTEEAIELARHAQDAGADAVL-------VIPPYYFKPSQEELIDYFRAIADATDLPIII 132 (289)
T ss_dssp -------------------SSSHHHHHHHHHHHHHTT-SEEE-------EEESTSSSCCHHHHHHHHHHHHHHSSSEEEE
T ss_pred -------------------chhHHHHHHHHHHHhhcCceEEE-------EeccccccchhhHHHHHHHHHHhhcCCCEEE
Confidence 12578888877777778999998 6543222 56667788889999999
Q ss_pred EEe
Q 013861 379 YQV 381 (435)
Q Consensus 379 YqV 381 (435)
||-
T Consensus 133 Yn~ 135 (289)
T PF00701_consen 133 YNN 135 (289)
T ss_dssp EEB
T ss_pred EEC
Confidence 996
No 338
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=40.81 E-value=23 Score=36.37 Aligned_cols=72 Identities=24% Similarity=0.397 Sum_probs=45.7
Q ss_pred CcccCCCCCceee-chhhhHHHHHHH-HHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEee
Q 013861 141 DTPIGAMPGCYRL-GWRHGLVQEVAK-ARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTD 218 (435)
Q Consensus 141 ~~~I~sMPGv~r~-s~~~~l~~~v~~-~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitD 218 (435)
....-.|||=--| .=|..-++.+.. -.++||+++=.+ +++ | ..-.+-.++|++.-||++|+|
T Consensus 98 ~~~~F~~PGkVLHlDGD~~YL~~Cl~~Ykql~i~a~G~~--~~E--~-----------eqp~~i~~Ll~~~~PDIlViT- 161 (287)
T PF05582_consen 98 KEEYFERPGKVLHLDGDEEYLNKCLKVYKQLGIPAVGIH--VPE--K-----------EQPEKIYRLLEEYRPDILVIT- 161 (287)
T ss_pred cccccCCCCeEEEecCCHHHHHHHHHHHHHcCCceEEEE--ech--H-----------HhhHHHHHHHHHcCCCEEEEe-
Confidence 3456679995433 334344444444 457899987664 332 1 112356677777779999997
Q ss_pred ecccCCCCCCcceeecCCC
Q 013861 219 VALDPYSSDGHDGIVREDG 237 (435)
Q Consensus 219 VcLc~YTshGHcGIv~e~g 237 (435)
||||++.+.+
T Consensus 162 ---------GHD~~~K~~~ 171 (287)
T PF05582_consen 162 ---------GHDGYLKNKK 171 (287)
T ss_pred ---------CchhhhcCCC
Confidence 9999997544
No 339
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=40.80 E-value=2.5e+02 Score=27.72 Aligned_cols=110 Identities=14% Similarity=0.139 Sum_probs=62.0
Q ss_pred echhhhHHHHHHHHHHc-CCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCC-CeEEEeeecccCCCCCCcc
Q 013861 153 LGWRHGLVQEVAKARDV-GVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYP-DLVIYTDVALDPYSSDGHD 230 (435)
Q Consensus 153 ~s~~~~l~~~v~~~~~~-GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~P-dl~IitDVcLc~YTshGHc 230 (435)
+..+ .+.+.++.+++. |++.++++|.. |+...=..-=-.+.++...+... .+-||+=|
T Consensus 18 iD~~-~~~~~i~~l~~~~Gv~gi~~~Gst--------GE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv----------- 77 (288)
T cd00954 18 INED-VLRAIVDYLIEKQGVDGLYVNGST--------GEGFLLSVEERKQIAEIVAEAAKGKVTLIAHV----------- 77 (288)
T ss_pred CCHH-HHHHHHHHHHhcCCCCEEEECcCC--------cCcccCCHHHHHHHHHHHHHHhCCCCeEEecc-----------
Confidence 4443 588899999999 99999999963 22222112222344554444432 23333211
Q ss_pred eeecCCCccccHHHHHHHHHHHHHHHHcCCCeec---CCCC---CCchHHHHHHHHHHCCCCCceeechh
Q 013861 231 GIVREDGVIMNDETVHQLCKQAVSQARAGADVVS---PSDM---MDGRVGAIRAALDAEGFQHVSIMSYT 294 (435)
Q Consensus 231 GIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVA---PSDM---MDGrVgAIR~aLD~~Gf~~v~IMSYS 294 (435)
| ..+.+...+.|-...++|||.|. |.-. -++-+...++..+... +.+||=|-
T Consensus 78 ------~----~~~~~~ai~~a~~a~~~Gad~v~~~~P~y~~~~~~~i~~~~~~v~~a~~--~lpi~iYn 135 (288)
T cd00954 78 ------G----SLNLKESQELAKHAEELGYDAISAITPFYYKFSFEEIKDYYREIIAAAA--SLPMIIYH 135 (288)
T ss_pred ------C----CCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCHHHHHHHHHHHHHhcC--CCCEEEEe
Confidence 1 11333344555556799999863 3221 1566677777776541 57888773
No 340
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=40.71 E-value=46 Score=32.58 Aligned_cols=54 Identities=30% Similarity=0.506 Sum_probs=42.9
Q ss_pred CcccCCCCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEe
Q 013861 141 DTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYT 217 (435)
Q Consensus 141 ~~~I~sMPGv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~Iit 217 (435)
...|..+||++ -..|+..++++|.+-|-|||. +. . | ..-|+.||.-||++-+|.
T Consensus 110 ~~~i~~iPG~~-------TpsEi~~A~~~Ga~~vKlFPA--~~---------~---G--~~~ikal~~p~p~i~~~p 163 (222)
T PRK07114 110 RRKVPYSPGCG-------SLSEIGYAEELGCEIVKLFPG--SV---------Y---G--PGFVKAIKGPMPWTKIMP 163 (222)
T ss_pred HcCCCEeCCCC-------CHHHHHHHHHCCCCEEEECcc--cc---------c---C--HHHHHHHhccCCCCeEEe
Confidence 45899999992 367899999999999999994 11 1 3 567999999999877664
No 341
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=40.53 E-value=1.9e+02 Score=28.52 Aligned_cols=208 Identities=16% Similarity=0.175 Sum_probs=106.8
Q ss_pred CCCCceeechhhhHHHHHHHHHHcCCCeEEE-eecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeec----
Q 013861 146 AMPGCYRLGWRHGLVQEVAKARDVGVNSVVL-FPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVA---- 220 (435)
Q Consensus 146 sMPGv~r~s~~~~l~~~v~~~~~~GI~sv~L-Fgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVc---- 220 (435)
..||+ +|+.+ ..++.++.|-+.||..|=+ ||. ....+..|..++.+.-.+.+..+..| .-..+.++++.-
T Consensus 11 q~~~~-~f~~~-~~~~ia~~L~~~GVd~IEvG~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~ 85 (266)
T cd07944 11 YVNNW-DFGDE-FVKAIYRALAAAGIDYVEIGYRS--SPEKEFKGKSAFCDDEFLRRLLGDSK-GNTKIAVMVDYGNDDI 85 (266)
T ss_pred cccCc-cCCHH-HHHHHHHHHHHCCCCEEEeecCC--CCccccCCCccCCCHHHHHHHHhhhc-cCCEEEEEECCCCCCH
Confidence 46776 78875 5888888999999999877 443 12245567777776555554444433 124577777664
Q ss_pred --ccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHH-cCCCe-ecCCCCCC---chHHHHHHHHHHCCCCCceeec-
Q 013861 221 --LDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQAR-AGADV-VSPSDMMD---GRVGAIRAALDAEGFQHVSIMS- 292 (435)
Q Consensus 221 --Lc~YTshGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~-AGADi-VAPSDMMD---GrVgAIR~aLD~~Gf~~v~IMS- 292 (435)
+.+...+|.+.|---. ....++. ++.++.+|+ .|-.+ +.+.|... ..+..+=+.+.+.|-..+.|.=
T Consensus 86 ~~l~~a~~~gv~~iri~~----~~~~~~~-~~~~i~~ak~~G~~v~~~~~~a~~~~~~~~~~~~~~~~~~g~~~i~l~DT 160 (266)
T cd07944 86 DLLEPASGSVVDMIRVAF----HKHEFDE-ALPLIKAIKEKGYEVFFNLMAISGYSDEELLELLELVNEIKPDVFYIVDS 160 (266)
T ss_pred HHHHHHhcCCcCEEEEec----ccccHHH-HHHHHHHHHHCCCeEEEEEEeecCCCHHHHHHHHHHHHhCCCCEEEEecC
Confidence 5567777877743110 1112333 334455554 56543 33334332 3333333333445654332210
Q ss_pred hh---hhhcccccccchhhhcC-CC-CCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHH-HH
Q 013861 293 YT---AKYASSFYGPFREALDS-NP-RFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDV-IR 366 (435)
Q Consensus 293 YS---aKyASafYGPFRdA~~S-ap-~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDI-Ir 366 (435)
+. -+-...++.-.|+.++. .| .|=-.-+++|-.+|.-+|+ +.|||+|=.|+.|-==..|-+-+.. +.
T Consensus 161 ~G~~~P~~v~~lv~~l~~~~~~~~~i~~H~Hn~~Gla~AN~laA~-------~aGa~~vd~s~~G~G~~aGN~~~E~~v~ 233 (266)
T cd07944 161 FGSMYPEDIKRIISLLRSNLDKDIKLGFHAHNNLQLALANTLEAI-------ELGVEIIDATVYGMGRGAGNLPTELLLD 233 (266)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCceEEEEeCCCccHHHHHHHHHH-------HcCCCEEEEecccCCCCcCcHHHHHHHH
Confidence 00 00111222233333321 11 1212456677777777764 6788988766555433455555443 33
Q ss_pred HHHh
Q 013861 367 LLRD 370 (435)
Q Consensus 367 ~vk~ 370 (435)
-++.
T Consensus 234 ~l~~ 237 (266)
T cd07944 234 YLNN 237 (266)
T ss_pred HHHH
Confidence 4443
No 342
>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=40.44 E-value=51 Score=31.62 Aligned_cols=72 Identities=25% Similarity=0.397 Sum_probs=48.1
Q ss_pred CCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCch-----HHHHHHHHhhC-CCCeEEEEechHHHHHHHHHHCCC
Q 013861 323 MNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPY-----LDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKM 396 (435)
Q Consensus 323 mdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~Y-----LDIIr~vk~~~-~lPvaaYqVSGEYaMikaAa~~G~ 396 (435)
+|.-|.+||++=+ ..+.+.-|+ +|=|++- +++|+++|+.+ +.||.+ ...+
T Consensus 10 LD~~~~~~a~~l~-~~l~~~v~~---------~kvG~~l~~~~G~~~i~~lk~~~~~~~v~~--------------DLK~ 65 (216)
T PRK13306 10 LDNQDLESAIEDA-KKVAEEVDI---------IEVGTILLLAEGMKAVRVLRALYPDKIIVA--------------DTKI 65 (216)
T ss_pred ecCCCHHHHHHHH-HHccccCCE---------EEEChHHHHHhCHHHHHHHHHHCCCCEEEE--------------EEee
Confidence 5778899998844 456665544 4555443 78999999985 788874 3445
Q ss_pred CchhhHHHHHHHHHHHhcccEeehh
Q 013861 397 IDEQRVMMESLMCLRRAGADIILTY 421 (435)
Q Consensus 397 ide~~~v~Esl~~ikRAGAd~IiTY 421 (435)
.|-.+.+.+. +.++|||++.-.
T Consensus 66 ~Di~~~v~~~---~~~~Gad~vTvH 87 (216)
T PRK13306 66 ADAGKILAKM---AFEAGADWVTVI 87 (216)
T ss_pred cCCcHHHHHH---HHHCCCCEEEEe
Confidence 5666665555 557788876543
No 343
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=40.33 E-value=1.9e+02 Score=28.28 Aligned_cols=132 Identities=20% Similarity=0.237 Sum_probs=68.6
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHC--CC--eEEEeeecccCCCCCCcceee
Q 013861 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRY--PD--LVIYTDVALDPYSSDGHDGIV 233 (435)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~--Pd--l~IitDVcLc~YTshGHcGIv 233 (435)
..+.+++++++.|...|.+--.+.. .+ +.-+.+-++.+++.. -+ ++|+. |.. |+-
T Consensus 94 ~~~~~ve~A~~~Gad~v~~~~~~g~-~~----------~~~~~~~~~~v~~~~~~~g~pl~vi~------~~~----g~~ 152 (267)
T PRK07226 94 VLVGTVEEAIKLGADAVSVHVNVGS-ET----------EAEMLEDLGEVAEECEEWGMPLLAMM------YPR----GPG 152 (267)
T ss_pred eeeecHHHHHHcCCCEEEEEEecCC-hh----------HHHHHHHHHHHHHHHHHcCCcEEEEE------ecC----CCc
Confidence 4678899999999998877332211 11 122444555555432 12 33332 322 221
Q ss_pred cCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCCCceeechhhhhcccccccchhhhcCCC
Q 013861 234 REDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNP 313 (435)
Q Consensus 234 ~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMMDGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRdA~~Sap 313 (435)
-+++ .+++.+...+++| +++|||+|-+| .-|.+..+|+..... .++|.. ++
T Consensus 153 ~e~~--~~~~~i~~a~~~a---~e~GAD~vKt~--~~~~~~~l~~~~~~~---~ipV~a----------------~G--- 203 (267)
T PRK07226 153 IKNE--YDPEVVAHAARVA---AELGADIVKTN--YTGDPESFREVVEGC---PVPVVI----------------AG--- 203 (267)
T ss_pred cCCC--ccHHHHHHHHHHH---HHHCCCEEeeC--CCCCHHHHHHHHHhC---CCCEEE----------------Ee---
Confidence 1223 1334444444444 57999999777 345455555555321 233311 11
Q ss_pred CCCCccccCCCCCCHHHHHHHHHhcccccccEEe
Q 013861 314 RFGDKKTYQMNPANYREALVEAQADESEGADILL 347 (435)
Q Consensus 314 ~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM 347 (435)
| ++..|.++++..+..=++-|||-+.
T Consensus 204 --G------i~~~~~~~~l~~v~~~~~aGA~Gis 229 (267)
T PRK07226 204 --G------PKTDTDREFLEMVRDAMEAGAAGVA 229 (267)
T ss_pred --C------CCCCCHHHHHHHHHHHHHcCCcEEe
Confidence 2 2233666766666655677888555
No 344
>cd01846 fatty_acyltransferase_like Fatty acyltransferase-like subfamily of the SGNH hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Might catalyze fatty acid transfer between phosphatidylcholine and sterols.
Probab=40.24 E-value=1.1e+02 Score=28.90 Aligned_cols=61 Identities=18% Similarity=0.267 Sum_probs=39.7
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcC------------CCCCHHHHHHHHHHHCCC-eEEEeee
Q 013861 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYN------------DNGLVPRTIWLLKDRYPD-LVIYTDV 219 (435)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~------------~~g~v~raIr~iK~~~Pd-l~IitDV 219 (435)
.+.+.++++.+.|.+.|++.+ +|+-...+....... -|..+.+.+..+++.+|+ -+++.|+
T Consensus 132 ~~~~~i~~l~~~g~~~i~v~~-~p~~~~~P~~~~~~~~~~~~~~~~~~~~N~~L~~~l~~l~~~~~~~~i~~~D~ 205 (270)
T cd01846 132 NLFQALQRLYAAGARNFLVLN-LPDLGLTPAFQAQGDAVAARATALTAAYNAKLAEKLAELKAQHPGVNILLFDT 205 (270)
T ss_pred HHHHHHHHHHHCCCCEEEEeC-CCCCCCCcccccCCcccHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEh
Confidence 577888899999999998887 465444443332222 233556667777788887 4445554
No 345
>PRK08185 hypothetical protein; Provisional
Probab=40.17 E-value=34 Score=34.67 Aligned_cols=82 Identities=17% Similarity=0.231 Sum_probs=53.0
Q ss_pred CCCHHHHHHHHHhcccccccEEeccc---CCC---cccCCCchHHHHHHHHhhCCCCeEEEEechH-HHHHHHHHHCCCC
Q 013861 325 PANYREALVEAQADESEGADILLFSV---LGS---QVKPGLPYLDVIRLLRDKYPLPIAAYQVSGE-YSMIKAGGALKMI 397 (435)
Q Consensus 325 p~N~~EAlre~~~D~~EGADilM~~~---~~~---~VKPal~YLDIIr~vk~~~~lPvaaYqVSGE-YaMikaAa~~G~i 397 (435)
..+.+||.+-... =|+|.|-+|+ =|- ..||.+. +|+++++++.+++|+..===||- -..++.|.+.|..
T Consensus 148 ~t~peea~~f~~~---TgvD~LAvaiGt~HG~y~~~~kp~L~-~e~l~~I~~~~~iPLVlHGgsg~~~e~~~~ai~~GI~ 223 (283)
T PRK08185 148 YTDPEQAEDFVSR---TGVDTLAVAIGTAHGIYPKDKKPELQ-MDLLKEINERVDIPLVLHGGSANPDAEIAESVQLGVG 223 (283)
T ss_pred CCCHHHHHHHHHh---hCCCEEEeccCcccCCcCCCCCCCcC-HHHHHHHHHhhCCCEEEECCCCCCHHHHHHHHHCCCe
Confidence 3455665443321 2999999432 221 1278887 99999999999999977665652 4568888999963
Q ss_pred ------chhhHHHHHHHHH
Q 013861 398 ------DEQRVMMESLMCL 410 (435)
Q Consensus 398 ------de~~~v~Esl~~i 410 (435)
|.+....+.+...
T Consensus 224 KiNi~T~l~~a~~~~~~~~ 242 (283)
T PRK08185 224 KINISSDMKYAFFKKVREI 242 (283)
T ss_pred EEEeChHHHHHHHHHHHHH
Confidence 3344455554443
No 346
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=40.12 E-value=1.9e+02 Score=31.53 Aligned_cols=101 Identities=21% Similarity=0.258 Sum_probs=66.7
Q ss_pred CCCCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHH-HHHhhCCCCeEE---EEechHHHHHHHHHHCCCCch
Q 013861 324 NPANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIR-LLRDKYPLPIAA---YQVSGEYSMIKAGGALKMIDE 399 (435)
Q Consensus 324 dp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr-~vk~~~~lPvaa---YqVSGEYaMikaAa~~G~ide 399 (435)
+-.|..+=++.+..=++-|||-|| ==--.--||=|| .+-+++++||+. ||+-.|+.. | ..+..|.
T Consensus 72 ~~~d~~~E~~K~~~A~~~GADtiM-------DLStggdl~~iR~~il~~s~vpvGTVPiYqa~~~~~~-k---~~~~~~m 140 (431)
T PRK13352 72 DISDIEEELEKAKVAVKYGADTIM-------DLSTGGDLDEIRRAIIEASPVPVGTVPIYQAAVEAAR-K---YGSVVDM 140 (431)
T ss_pred CCCCHHHHHHHHHHHHHcCCCeEe-------eccCCCCHHHHHHHHHHcCCCCCcChhHHHHHHHHHh-c---CCChhhC
Confidence 445777889999999999999999 222223466665 456788999986 666555511 0 1122222
Q ss_pred -hhHHHHHHHHHHHhcccEeehh--cHHHHHHHHhccCC
Q 013861 400 -QRVMMESLMCLRRAGADIILTY--FALQAARCLCGEKR 435 (435)
Q Consensus 400 -~~~v~Esl~~ikRAGAd~IiTY--fA~~~a~~L~~~~~ 435 (435)
.+-+++.+..=-+-|.|++--. ..++.+++|+.++|
T Consensus 141 t~d~~~~~ie~qa~~GVDfmTiHcGi~~~~~~~~~~~~R 179 (431)
T PRK13352 141 TEDDLFDVIEKQAKDGVDFMTIHCGVTRETLERLKKSGR 179 (431)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEccchhHHHHHHHHhcCC
Confidence 3577888888889999986433 35677777765443
No 347
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional
Probab=39.87 E-value=1.4e+02 Score=26.48 Aligned_cols=65 Identities=23% Similarity=0.246 Sum_probs=47.2
Q ss_pred CCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCc
Q 013861 326 ANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMID 398 (435)
Q Consensus 326 ~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G~id 398 (435)
.+..+++.... +..|++++.. --|.+.-+++++.+++...+|+....-..+......+.+.|..|
T Consensus 32 ~~~~~~~~~~~----~~~d~vl~d~----~~~~~~g~~~~~~l~~~~~~~ii~lt~~~~~~~~~~~~~~ga~~ 96 (232)
T PRK10955 32 HDGEQALDLLD----DSIDLLLLDV----MMPKKNGIDTLKELRQTHQTPVIMLTARGSELDRVLGLELGADD 96 (232)
T ss_pred CCHHHHHHHhh----cCCCEEEEeC----CCCCCcHHHHHHHHHhcCCCcEEEEECCCCHHHHHHHHHcCCCE
Confidence 36667776542 3479888111 13667778999999988789999987777888888888888754
No 348
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=39.61 E-value=25 Score=36.05 Aligned_cols=67 Identities=24% Similarity=0.438 Sum_probs=42.8
Q ss_pred CCCCceee-chhhhHHHHHHH-HHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccC
Q 013861 146 AMPGCYRL-GWRHGLVQEVAK-ARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDP 223 (435)
Q Consensus 146 sMPGv~r~-s~~~~l~~~v~~-~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~ 223 (435)
.|||=--| .=|.+-++.+-. -.++||+.+=.+ +++ | ..-.+-.++|++.-||++|||
T Consensus 102 ~~PGrVLHiDGD~~YL~~Cl~~Ykql~i~a~G~~--~~E--~-----------eqp~~i~~Ll~~~~PDIlViT------ 160 (283)
T TIGR02855 102 GMPGRVLHIDGDPEYLRKCLKLYKKIGVPVVGIH--CKE--K-----------EMPEKVLDLIEEVRPDILVIT------ 160 (283)
T ss_pred CCCCcEEeecCCHHHHHHHHHHHHHhCCceEEEE--ecc--h-----------hchHHHHHHHHHhCCCEEEEe------
Confidence 68885433 323334444444 356899886554 232 1 223456778888889999997
Q ss_pred CCCCCcceeecCCC
Q 013861 224 YSSDGHDGIVREDG 237 (435)
Q Consensus 224 YTshGHcGIv~e~g 237 (435)
||||++.+.|
T Consensus 161 ----GHD~~~K~~~ 170 (283)
T TIGR02855 161 ----GHDAYSKNKG 170 (283)
T ss_pred ----CchhhhcCCC
Confidence 9999996434
No 349
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=39.25 E-value=28 Score=34.46 Aligned_cols=150 Identities=28% Similarity=0.367 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHHHHHcCCCeecCCCCCCch-----------HHHHHHHHHHCCCCCceeechh--------hhhcccccc
Q 013861 243 ETVHQLCKQAVSQARAGADVVSPSDMMDGR-----------VGAIRAALDAEGFQHVSIMSYT--------AKYASSFYG 303 (435)
Q Consensus 243 ~Tv~~Lak~Avs~A~AGADiVAPSDMMDGr-----------VgAIR~aLD~~Gf~~v~IMSYS--------aKyASafYG 303 (435)
.-+..|+++....-.+|||++= =|.|||+ |.++|+-++...|-||-.|--. +|=--+.|.
T Consensus 14 ~dfanL~~e~~~~l~~GadwlH-lDVMDg~FVpNiT~G~pvV~slR~~~~~~~ffD~HmMV~~Peq~V~~~a~agas~~t 92 (224)
T KOG3111|consen 14 SDFANLAAECKKMLDAGADWLH-LDVMDGHFVPNITFGPPVVESLRKHTGADPFFDVHMMVENPEQWVDQMAKAGASLFT 92 (224)
T ss_pred cchHHHHHHHHHHHHcCCCeEE-EeeecccccCCcccchHHHHHHHhccCCCcceeEEEeecCHHHHHHHHHhcCcceEE
Confidence 3467799999999999999986 5999997 8899999999999888877421 222223444
Q ss_pred cchhhhcC-------CCCCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCc-------hHHHHHHHH
Q 013861 304 PFREALDS-------NPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLP-------YLDVIRLLR 369 (435)
Q Consensus 304 PFRdA~~S-------ap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~-------YLDIIr~vk 369 (435)
=.-|++++ --+.|=|-.--++|+-.-|.+..... =.||+. =-.|+||.- -++=++.+|
T Consensus 93 fH~E~~q~~~~lv~~ir~~Gmk~G~alkPgT~Ve~~~~~~~----~~D~vL----vMtVePGFGGQkFme~mm~KV~~lR 164 (224)
T KOG3111|consen 93 FHYEATQKPAELVEKIREKGMKVGLALKPGTPVEDLEPLAE----HVDMVL----VMTVEPGFGGQKFMEDMMPKVEWLR 164 (224)
T ss_pred EEEeeccCHHHHHHHHHHcCCeeeEEeCCCCcHHHHHHhhc----cccEEE----EEEecCCCchhhhHHHHHHHHHHHH
Confidence 33355444 11135566677888888887765443 455543 114899842 266677778
Q ss_pred hhCCCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEeeh
Q 013861 370 DKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILT 420 (435)
Q Consensus 370 ~~~~lPvaaYqVSGEYaMikaAa~~G~ide~~~v~Esl~~ikRAGAd~IiT 420 (435)
++++-+ --||-|- +=.++....-.|||++|+.
T Consensus 165 ~kyp~l--~ievDGG-----------------v~~~ti~~~a~AGAN~iVa 196 (224)
T KOG3111|consen 165 EKYPNL--DIEVDGG-----------------VGPSTIDKAAEAGANMIVA 196 (224)
T ss_pred HhCCCc--eEEecCC-----------------cCcchHHHHHHcCCCEEEe
Confidence 777543 3456442 2245667788889999885
No 350
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=39.20 E-value=64 Score=35.09 Aligned_cols=62 Identities=29% Similarity=0.440 Sum_probs=42.5
Q ss_pred HHHHHHHhcccccccEEecccCCCcccCCCch----HHHHHHHHhhCC--CCeEEEEechHHHHHHHHHHCCCCchhhHH
Q 013861 330 EALVEAQADESEGADILLFSVLGSQVKPGLPY----LDVIRLLRDKYP--LPIAAYQVSGEYSMIKAGGALKMIDEQRVM 403 (435)
Q Consensus 330 EAlre~~~D~~EGADilM~~~~~~~VKPal~Y----LDIIr~vk~~~~--lPvaaYqVSGEYaMikaAa~~G~ide~~~v 403 (435)
+++..+..=++.|+|+|. |--+--+ ++.|+.+|+.++ ++|.|=+| .+
T Consensus 242 ~~~~ra~~Lv~aGvd~i~-------vd~a~g~~~~~~~~i~~ir~~~~~~~~V~aGnV---------------~t----- 294 (502)
T PRK07107 242 DYAERVPALVEAGADVLC-------IDSSEGYSEWQKRTLDWIREKYGDSVKVGAGNV---------------VD----- 294 (502)
T ss_pred hHHHHHHHHHHhCCCeEe-------ecCcccccHHHHHHHHHHHHhCCCCceEEeccc---------------cC-----
Confidence 445555555568999998 5444445 999999999985 77777555 22
Q ss_pred HHHHHHHHHhcccEe
Q 013861 404 MESLMCLRRAGADII 418 (435)
Q Consensus 404 ~Esl~~ikRAGAd~I 418 (435)
.|....+..||||.|
T Consensus 295 ~e~a~~li~aGAd~I 309 (502)
T PRK07107 295 REGFRYLAEAGADFV 309 (502)
T ss_pred HHHHHHHHHcCCCEE
Confidence 233344557899997
No 351
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=39.18 E-value=83 Score=31.28 Aligned_cols=74 Identities=22% Similarity=0.254 Sum_probs=47.2
Q ss_pred HHHHHHHhcccc-cccEEecccCCCcc--cCCC---------chHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCC
Q 013861 330 EALVEAQADESE-GADILLFSVLGSQV--KPGL---------PYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMI 397 (435)
Q Consensus 330 EAlre~~~D~~E-GADilM~~~~~~~V--KPal---------~YLDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G~i 397 (435)
|-+.++...++| |||+|=+.+---++ +.+. .+.+|++.+|+..++||.+= .+ .
T Consensus 113 ~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~Pv~vK-l~--------------~ 177 (299)
T cd02940 113 EDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREAVKIPVIAK-LT--------------P 177 (299)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHhcCCCeEEE-CC--------------C
Confidence 334455555554 99998854332222 1111 36899999999999998853 22 1
Q ss_pred chhhHHHHHHHHHHHhcccEee
Q 013861 398 DEQRVMMESLMCLRRAGADIIL 419 (435)
Q Consensus 398 de~~~v~Esl~~ikRAGAd~Ii 419 (435)
|.. -+.|....+..+|||.|+
T Consensus 178 ~~~-~~~~~a~~~~~~Gadgi~ 198 (299)
T cd02940 178 NIT-DIREIARAAKEGGADGVS 198 (299)
T ss_pred Cch-hHHHHHHHHHHcCCCEEE
Confidence 222 356777788999999986
No 352
>cd08562 GDPD_EcUgpQ_like Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase UgpQ and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), UgpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two distinct GP-GDEs. UgpQ gene from the E. coli ugp operon codes for a cytosolic phosphodiesterase GlpQ, which is the prototype of this family. Various glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG)
Probab=39.04 E-value=2.6e+02 Score=25.82 Aligned_cols=116 Identities=19% Similarity=0.151 Sum_probs=62.9
Q ss_pred cCCCCCCchHHHHHHHHHHCCC--CCceeechhhhhcccccccchhhhcCCCCCCCccccCC--CCCCHHHHHHHHHhcc
Q 013861 264 SPSDMMDGRVGAIRAALDAEGF--QHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQM--NPANYREALVEAQADE 339 (435)
Q Consensus 264 APSDMMDGrVgAIR~aLD~~Gf--~~v~IMSYSaKyASafYGPFRdA~~Sap~fgDRktYQm--dp~N~~EAlre~~~D~ 339 (435)
.+.++-++-+..+.+.|.+.|. ..|.+.||....... +|+. .|.+ +..|-. .+....+.++
T Consensus 109 ~~~~~~~~~~~~v~~~l~~~~~~~~~v~~~Sf~~~~l~~----~~~~---~p~~--~~~~l~~~~~~~~~~~~~------ 173 (229)
T cd08562 109 PDPGDEALTARVVAAALRELWPHASKLLLSSFSLEALRA----ARRA---APEL--PLGLLFDTLPADWLELLA------ 173 (229)
T ss_pred CCCCccHHHHHHHHHHHHHhcCCcCCEEEECCCHHHHHH----HHHh---CCCC--cEEEEecCCCcCHHHHHH------
Confidence 4444433445566677777775 567787776543332 2332 2322 111111 1212222222
Q ss_pred cccccEEecccCCCcccCCCchHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEee
Q 013861 340 SEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIIL 419 (435)
Q Consensus 340 ~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G~ide~~~v~Esl~~ikRAGAd~Ii 419 (435)
+-|++.+- +.-....-+.|..+++. +++|.+|-|-.+ |.+.-+.+.|.|.||
T Consensus 174 ~~~~~~~~-------~~~~~~~~~~v~~~~~~-g~~v~~wTvn~~--------------------~~~~~~~~~gVdgii 225 (229)
T cd08562 174 ALGAVSIH-------LNYRGLTEEQVKALKDA-GYKLLVYTVNDP--------------------ARAAELLEWGVDAIF 225 (229)
T ss_pred HcCCeEEe-------cChhhCCHHHHHHHHHC-CCEEEEEeCCCH--------------------HHHHHHHHCCCCEEE
Confidence 23566554 32222335788888774 899999987322 345566778999999
Q ss_pred hhc
Q 013861 420 TYF 422 (435)
Q Consensus 420 TYf 422 (435)
|=|
T Consensus 226 TD~ 228 (229)
T cd08562 226 TDR 228 (229)
T ss_pred cCC
Confidence 954
No 353
>KOG1579 consensus Homocysteine S-methyltransferase [Amino acid transport and metabolism]
Probab=38.95 E-value=24 Score=36.72 Aligned_cols=24 Identities=33% Similarity=0.333 Sum_probs=20.8
Q ss_pred CchhhHHHHHHHHHHHhcccEeeh
Q 013861 397 IDEQRVMMESLMCLRRAGADIILT 420 (435)
Q Consensus 397 ide~~~v~Esl~~ikRAGAd~IiT 420 (435)
++..++|.+.++.|.|||||+|.|
T Consensus 49 ~s~Pe~V~~~H~efL~aGadIi~T 72 (317)
T KOG1579|consen 49 ASNPEAVEQVHKEFLRAGADIIST 72 (317)
T ss_pred ccChHHHHHHHHHHHHccCcEEEE
Confidence 344689999999999999999975
No 354
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=38.87 E-value=1.9e+02 Score=29.11 Aligned_cols=124 Identities=19% Similarity=0.209 Sum_probs=81.7
Q ss_pred HHHHHcCCCeecCCCCCCch-HHHHHHHHHHCCCCCceeechhhhhcccccccchhhhcCCCCCCCccccCCCCCCHHHH
Q 013861 253 VSQARAGADVVSPSDMMDGR-VGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREA 331 (435)
Q Consensus 253 vs~A~AGADiVAPSDMMDGr-VgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRdA~~Sap~fgDRktYQmdp~N~~EA 331 (435)
-.+|++||+|||=-.----| ++.+-+.+...-+.+.-+|+ |-+|.+|+
T Consensus 92 d~L~~~Ga~IIA~DaT~R~RP~~~~~~~i~~~k~~~~l~MA-------------------------------D~St~ee~ 140 (229)
T COG3010 92 DALAEAGADIIAFDATDRPRPDGDLEELIARIKYPGQLAMA-------------------------------DCSTFEEG 140 (229)
T ss_pred HHHHHCCCcEEEeecccCCCCcchHHHHHHHhhcCCcEEEe-------------------------------ccCCHHHH
Confidence 35789999999944332222 22566666667777777775 34467777
Q ss_pred HHHHHhcccccccEEecccC---CCcccCCCchHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHH
Q 013861 332 LVEAQADESEGADILLFSVL---GSQVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLM 408 (435)
Q Consensus 332 lre~~~D~~EGADilM~~~~---~~~VKPal~YLDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G~ide~~~v~Esl~ 408 (435)
+-.-. -|+|+|=...- +...||..|=++.++++.+ .+.+|.| .|-++--+- ..
T Consensus 141 l~a~~----~G~D~IGTTLsGYT~~~~~~~~pDf~lvk~l~~-~~~~vIA---------------EGr~~tP~~----Ak 196 (229)
T COG3010 141 LNAHK----LGFDIIGTTLSGYTGYTEKPTEPDFQLVKQLSD-AGCRVIA---------------EGRYNTPEQ----AK 196 (229)
T ss_pred HHHHH----cCCcEEecccccccCCCCCCCCCcHHHHHHHHh-CCCeEEe---------------eCCCCCHHH----HH
Confidence 77654 49999863333 3245999999999999998 6677765 344444322 23
Q ss_pred HHHHhcccEeehhcH----HHHHHHHh
Q 013861 409 CLRRAGADIILTYFA----LQAARCLC 431 (435)
Q Consensus 409 ~ikRAGAd~IiTYfA----~~~a~~L~ 431 (435)
-..+.||+.|+---| .++.+|..
T Consensus 197 ~a~~~Ga~aVvVGsAITRp~~It~~F~ 223 (229)
T COG3010 197 KAIEIGADAVVVGSAITRPEEITQWFV 223 (229)
T ss_pred HHHHhCCeEEEECcccCCHHHHHHHHH
Confidence 345679998876555 46777764
No 355
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=38.59 E-value=63 Score=32.09 Aligned_cols=109 Identities=17% Similarity=0.216 Sum_probs=67.8
Q ss_pred cCCCccccHHHHHHHHHHHHHHHHcC-CCeecCCCCC--------CchHHHHHHHHHHCCCCCceeechhhhhccccccc
Q 013861 234 REDGVIMNDETVHQLCKQAVSQARAG-ADVVSPSDMM--------DGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGP 304 (435)
Q Consensus 234 ~e~g~IdND~Tv~~Lak~Avs~A~AG-ADiVAPSDMM--------DGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGP 304 (435)
++||.|| .+.++++.+. +.++| +|-|.+.+.+ +=|..-++.+.+..+ .+++||.-.
T Consensus 13 ~~dg~iD-~~~~~~~i~~---~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~-~~~pvi~gv---------- 77 (290)
T TIGR00683 13 NEDGTIN-EKGLRQIIRH---NIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAK-DQIALIAQV---------- 77 (290)
T ss_pred CCCCCcC-HHHHHHHHHH---HHhCCCcCEEEECCcccccccCCHHHHHHHHHHHHHHhC-CCCcEEEec----------
Confidence 3456665 4555555554 56689 9999777543 235556666666654 356665431
Q ss_pred chhhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCch-------HHHHHHHHhhC-CCCe
Q 013861 305 FREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPY-------LDVIRLLRDKY-PLPI 376 (435)
Q Consensus 305 FRdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~Y-------LDIIr~vk~~~-~lPv 376 (435)
--.+.+|++..++.=.+=|||.|| |=|-..| ++=.+++.+.+ ++||
T Consensus 78 -------------------~~~~t~~~i~la~~a~~~Gad~v~-------v~~P~y~~~~~~~i~~yf~~v~~~~~~lpv 131 (290)
T TIGR00683 78 -------------------GSVNLKEAVELGKYATELGYDCLS-------AVTPFYYKFSFPEIKHYYDTIIAETGGLNM 131 (290)
T ss_pred -------------------CCCCHHHHHHHHHHHHHhCCCEEE-------EeCCcCCCCCHHHHHHHHHHHHhhCCCCCE
Confidence 112667777777766677999999 6443211 34444565666 7999
Q ss_pred EEEEech
Q 013861 377 AAYQVSG 383 (435)
Q Consensus 377 aaYqVSG 383 (435)
..||.-+
T Consensus 132 ~lYn~P~ 138 (290)
T TIGR00683 132 IVYSIPF 138 (290)
T ss_pred EEEeCcc
Confidence 9999654
No 356
>PLN02489 homocysteine S-methyltransferase
Probab=38.53 E-value=26 Score=35.91 Aligned_cols=24 Identities=33% Similarity=0.455 Sum_probs=21.1
Q ss_pred CchhhHHHHHHHHHHHhcccEeeh
Q 013861 397 IDEQRVMMESLMCLRRAGADIILT 420 (435)
Q Consensus 397 ide~~~v~Esl~~ikRAGAd~IiT 420 (435)
++..+.|.+.+..+.+||||+|.|
T Consensus 51 l~~Pe~V~~vH~~yl~AGAdvI~T 74 (335)
T PLN02489 51 ITSPHLIRKVHLDYLEAGADIIIT 74 (335)
T ss_pred cCCHHHHHHHHHHHHHhCCCEEEe
Confidence 566789999999999999998865
No 357
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=38.23 E-value=90 Score=32.45 Aligned_cols=73 Identities=19% Similarity=0.181 Sum_probs=47.2
Q ss_pred HHHHHHHhccc-ccccEEecccCCCcccCCC------------chHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCC
Q 013861 330 EALVEAQADES-EGADILLFSVLGSQVKPGL------------PYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKM 396 (435)
Q Consensus 330 EAlre~~~D~~-EGADilM~~~~~~~VKPal------------~YLDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G~ 396 (435)
|.+.+....++ .|||+|-+. +|.-.++.. .+.+|++.+|+..++||.+= .+
T Consensus 113 ~~~~~~a~~~~~~g~d~ielN-~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~~~~~~Pv~vK-l~-------------- 176 (420)
T PRK08318 113 EEWKEIAPLVEETGADGIELN-FGCPHGMSERGMGSAVGQVPELVEMYTRWVKRGSRLPVIVK-LT-------------- 176 (420)
T ss_pred HHHHHHHHHHHhcCCCEEEEe-CCCCCCccccCCcccccCCHHHHHHHHHHHHhccCCcEEEE-cC--------------
Confidence 44555555544 489998743 333333321 56899999999999998752 22
Q ss_pred CchhhHHHHHHHHHHHhcccEee
Q 013861 397 IDEQRVMMESLMCLRRAGADIIL 419 (435)
Q Consensus 397 ide~~~v~Esl~~ikRAGAd~Ii 419 (435)
-|... +.|....+..+|||.|+
T Consensus 177 p~~~~-~~~~a~~~~~~Gadgi~ 198 (420)
T PRK08318 177 PNITD-IREPARAAKRGGADAVS 198 (420)
T ss_pred CCccc-HHHHHHHHHHCCCCEEE
Confidence 12222 56677778899999987
No 358
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=38.02 E-value=73 Score=34.85 Aligned_cols=88 Identities=13% Similarity=0.051 Sum_probs=53.8
Q ss_pred HHHHHHHHhcccccccEEecccCCCcc-cCCCc-hHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCC--C-chhhH-
Q 013861 329 REALVEAQADESEGADILLFSVLGSQV-KPGLP-YLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKM--I-DEQRV- 402 (435)
Q Consensus 329 ~EAlre~~~D~~EGADilM~~~~~~~V-KPal~-YLDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G~--i-de~~~- 402 (435)
.+.+..+..=+++|||||= +|-.. .|... =..+|+.+++.+++||..= |-....+++|.++|. + |-...
T Consensus 165 ~~i~~~A~~~~~~GADIID---IG~~st~p~~~~v~~~V~~l~~~~~~pISID--T~~~~v~eaAL~aGAdiINsVs~~~ 239 (499)
T TIGR00284 165 DGIEGLAARMERDGADMVA---LGTGSFDDDPDVVKEKVKTALDALDSPVIAD--TPTLDELYEALKAGASGVIMPDVEN 239 (499)
T ss_pred HHHHHHHHHHHHCCCCEEE---ECCCcCCCcHHHHHHHHHHHHhhCCCcEEEe--CCCHHHHHHHHHcCCCEEEECCccc
Confidence 4556667777899999998 33221 35432 4678888888888998643 334456777776662 1 11111
Q ss_pred HHHHHHHHHHhcccEeehh
Q 013861 403 MMESLMCLRRAGADIILTY 421 (435)
Q Consensus 403 v~Esl~~ikRAGAd~IiTY 421 (435)
+-|.+.-+++.|+-+|+..
T Consensus 240 ~d~~~~l~a~~g~~vVlm~ 258 (499)
T TIGR00284 240 AVELASEKKLPEDAFVVVP 258 (499)
T ss_pred hhHHHHHHHHcCCeEEEEc
Confidence 2233334667788888843
No 359
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional
Probab=37.68 E-value=1.7e+02 Score=25.76 Aligned_cols=65 Identities=18% Similarity=0.079 Sum_probs=43.9
Q ss_pred CHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCc
Q 013861 327 NYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMID 398 (435)
Q Consensus 327 N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G~id 398 (435)
+..+++.... ++..|+++.. ..-|.+..+++++.+++...+|+....-.++......+.+.|..|
T Consensus 34 ~~~~~~~~~~---~~~~dlvild----~~l~~~~g~~~~~~lr~~~~~~ii~l~~~~~~~~~~~~l~~Ga~d 98 (221)
T PRK10766 34 SGAGMREIMQ---NQHVDLILLD----INLPGEDGLMLTRELRSRSTVGIILVTGRTDSIDRIVGLEMGADD 98 (221)
T ss_pred CHHHHHHHHh---cCCCCEEEEe----CCCCCCCHHHHHHHHHhCCCCCEEEEECCCcHHHHHHHHHcCCCc
Confidence 5566665543 3468998821 123777889999999987789998876555555555667777654
No 360
>PRK15108 biotin synthase; Provisional
Probab=37.61 E-value=1.1e+02 Score=31.43 Aligned_cols=101 Identities=15% Similarity=0.159 Sum_probs=55.6
Q ss_pred ceeechhhhhcc--cccccchhhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCC----Cch
Q 013861 288 VSIMSYTAKYAS--SFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPG----LPY 361 (435)
Q Consensus 288 v~IMSYSaKyAS--afYGPFRdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPa----l~Y 361 (435)
++|+..-+.+++ |-|-.|+.--. + +..+.|.|+| +|.+..+..-.+.|+.=+....-| -.|. --|
T Consensus 43 ~~i~~~~Tn~C~~~C~yC~~~~~~~--~--~~~~~~~ls~---eEI~~~a~~~~~~G~~~i~i~~~g--~~p~~~~~e~i 113 (345)
T PRK15108 43 STLLSIKTGACPEDCKYCPQSSRYK--T--GLEAERLMEV---EQVLESARKAKAAGSTRFCMGAAW--KNPHERDMPYL 113 (345)
T ss_pred EEeEEEECCCcCCCCcCCCCcccCC--C--CCCcccCCCH---HHHHHHHHHHHHcCCCEEEEEecC--CCCCcchHHHH
Confidence 566665333333 56666653111 1 2223456766 777777776667888876522221 1342 346
Q ss_pred HHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccE
Q 013861 362 LDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADI 417 (435)
Q Consensus 362 LDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G~ide~~~v~Esl~~ikRAGAd~ 417 (435)
+|+|+.+|+ ..+++++. +|.++ -|.+..+|.||+|.
T Consensus 114 ~~~i~~ik~-~~i~v~~s--------------~G~ls-----~e~l~~LkeAGld~ 149 (345)
T PRK15108 114 EQMVQGVKA-MGLETCMT--------------LGTLS-----ESQAQRLANAGLDY 149 (345)
T ss_pred HHHHHHHHh-CCCEEEEe--------------CCcCC-----HHHHHHHHHcCCCE
Confidence 799999995 45555422 33333 34556667777773
No 361
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=37.57 E-value=1.5e+02 Score=29.31 Aligned_cols=90 Identities=22% Similarity=0.330 Sum_probs=53.1
Q ss_pred CCHHHHHHHHHhcccccccEEecccCCCcccCCC--chHH---HHHHHHhhCCCCeEEEEechHHHHHHHHHHC--C--C
Q 013861 326 ANYREALVEAQADESEGADILLFSVLGSQVKPGL--PYLD---VIRLLRDKYPLPIAAYQVSGEYSMIKAGGAL--K--M 396 (435)
Q Consensus 326 ~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal--~YLD---IIr~vk~~~~lPvaaYqVSGEYaMikaAa~~--G--~ 396 (435)
.|..+++..+..-+++|||||=. |-. |+. .=-. ++..+++.+++|+..= |-....+++|.+. | +
T Consensus 23 ~~~d~~~~~A~~~~~~GAdiIDI---G~~--~~~~~~~ee~~r~v~~i~~~~~~piSID--T~~~~v~e~aL~~~~G~~i 95 (252)
T cd00740 23 EDYDEALDVARQQVEGGAQILDL---NVD--YGGLDGVSAMKWLLNLLATEPTVPLMLD--STNWEVIEAGLKCCQGKCV 95 (252)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEE---CCC--CCCCCHHHHHHHHHHHHHHhcCCcEEee--CCcHHHHHHHHhhCCCCcE
Confidence 57789999999999999999983 321 321 1111 2222455568887542 2344556666654 3 2
Q ss_pred Cch---h---hHHHHHHHHHHHhcccEeehhc
Q 013861 397 IDE---Q---RVMMESLMCLRRAGADIILTYF 422 (435)
Q Consensus 397 ide---~---~~v~Esl~~ikRAGAd~IiTYf 422 (435)
++- . +-+-+.+.-+++.|+.+|+..+
T Consensus 96 INsIs~~~~~e~~~~~~~~~~~~~~~vV~m~~ 127 (252)
T cd00740 96 VNSINLEDGEERFLKVARLAKEHGAAVVVLAF 127 (252)
T ss_pred EEeCCCCCCccccHHHHHHHHHhCCCEEEecc
Confidence 221 1 1122333447899999999876
No 362
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=37.57 E-value=1.6e+02 Score=32.08 Aligned_cols=99 Identities=21% Similarity=0.158 Sum_probs=55.2
Q ss_pred ceeechhhhHHHHHHHHHHcCCCeEEEe-------ecC-----------CCCCCCcccCc----CcCCCCCHHHHHHHHH
Q 013861 150 CYRLGWRHGLVQEVAKARDVGVNSVVLF-------PKV-----------PDALKSPTGDE----AYNDNGLVPRTIWLLK 207 (435)
Q Consensus 150 v~r~s~~~~l~~~v~~~~~~GI~sv~LF-------gvi-----------~~~~Kd~~Gs~----A~~~~g~v~raIr~iK 207 (435)
+.....+..+.+-++.+.+.++..+.+- |+| |...||+.|.- +.+.+....|+-.++
T Consensus 173 ~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~Dilk~~~~P~a~~d~~grL~V~~av~~~~~~~ra~~Lv- 251 (502)
T PRK07107 173 LVTANEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYDSHKENPLELLDSSKRYVVGAGINTRDYAERVPALV- 251 (502)
T ss_pred eEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEhHHHHhcccChhhhhhhccCeeeeeccChhhHHHHHHHHH-
Confidence 3333444446666777888888876442 111 23356666665 444444445554444
Q ss_pred HHCCCeEEEeeecccCCCCCCcceeecC----------------CCccccHHHHHHHHHHHHHHHHcCCCee
Q 013861 208 DRYPDLVIYTDVALDPYSSDGHDGIVRE----------------DGVIMNDETVHQLCKQAVSQARAGADVV 263 (435)
Q Consensus 208 ~~~Pdl~IitDVcLc~YTshGHcGIv~e----------------~g~IdND~Tv~~Lak~Avs~A~AGADiV 263 (435)
+.--|++++ + ++|||.-.+.+ -|.|. -.++|....+||||.|
T Consensus 252 ~aGvd~i~v-----d--~a~g~~~~~~~~i~~ir~~~~~~~~V~aGnV~-------t~e~a~~li~aGAd~I 309 (502)
T PRK07107 252 EAGADVLCI-----D--SSEGYSEWQKRTLDWIREKYGDSVKVGAGNVV-------DREGFRYLAEAGADFV 309 (502)
T ss_pred HhCCCeEee-----c--CcccccHHHHHHHHHHHHhCCCCceEEecccc-------CHHHHHHHHHcCCCEE
Confidence 455676653 3 89999543210 12122 2346666778999997
No 363
>PRK14542 nucleoside diphosphate kinase; Provisional
Probab=37.49 E-value=48 Score=30.08 Aligned_cols=95 Identities=18% Similarity=0.340 Sum_probs=60.8
Q ss_pred eecCCCCCCchHHHHHHHHHHCCC--CCceeechhhhhcccccccchhhhcCCCCCCCccccCCCCCCHHHHHHHHHhcc
Q 013861 262 VVSPSDMMDGRVGAIRAALDAEGF--QHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADE 339 (435)
Q Consensus 262 iVAPSDMMDGrVgAIR~aLD~~Gf--~~v~IMSYSaKyASafYGPFRdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~ 339 (435)
+|=|..+-.|.+|.|-+.+.++|| ...-.+-.+-..|..||..+
T Consensus 7 iIKPdav~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~~~a~~~Y~~~---------------------------------- 52 (137)
T PRK14542 7 MIKPDGVKNKHVGNILQRIEKEGFKILGLKYLKLSLEDAKQFYKVH---------------------------------- 52 (137)
T ss_pred EECcchhhcCchHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHHh----------------------------------
Confidence 466777788999999999999999 44455666666777777543
Q ss_pred cccccEEecccCCCcccCCCchHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHH
Q 013861 340 SEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMC 409 (435)
Q Consensus 340 ~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G~ide~~~v~Esl~~ 409 (435)
- .|| +|-|++..+ +.=|+.|+.++||=+.-+-=.-.|..|.+.+--++|.+
T Consensus 53 -------~-------~k~--f~~~Lv~~m---~sGp~va~~l~g~nav~~~R~l~Gpt~p~~A~p~siR~ 103 (137)
T PRK14542 53 -------S-------ARP--FYNDLCNYM---SSGPIVAAALERDNAVLHWREVIGATDPKEAAAGTIRA 103 (137)
T ss_pred -------c-------CCc--cHHHHHHHH---hcCCeEEEEEeCCCHHHHHHHHhCCCCchhCCCCCchH
Confidence 1 355 466655444 23377777777775554444455666655443444443
No 364
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=37.33 E-value=58 Score=33.25 Aligned_cols=91 Identities=15% Similarity=0.232 Sum_probs=0.0
Q ss_pred cccccchhhhcCCCC-CCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHh-hCCCCeE
Q 013861 300 SFYGPFREALDSNPR-FGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRD-KYPLPIA 377 (435)
Q Consensus 300 afYGPFRdA~~Sap~-fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~-~~~lPva 377 (435)
.|||.+.+|+..+-+ ...+| -.+-..|.+||... ++.|||+|| .- -+..=++-+.++. +..-|=.
T Consensus 181 ~~~G~i~~ai~~~r~~~~~~k-IeVEv~tl~ea~ea----l~~gaDiI~-------LD-nm~~e~vk~av~~~~~~~~~v 247 (289)
T PRK07896 181 AAAGSVVAALRAVRAAAPDLP-CEVEVDSLEQLDEV----LAEGAELVL-------LD-NFPVWQTQEAVQRRDARAPTV 247 (289)
T ss_pred HHhCcHHHHHHHHHHhCCCCC-EEEEcCCHHHHHHH----HHcCCCEEE-------eC-CCCHHHHHHHHHHHhccCCCE
Q ss_pred EEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEeeh
Q 013861 378 AYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILT 420 (435)
Q Consensus 378 aYqVSGEYaMikaAa~~G~ide~~~v~Esl~~ikRAGAd~IiT 420 (435)
.-.+|| .+=.|.+..+...|+|+|-|
T Consensus 248 ~ieaSG-----------------GI~~~ni~~yA~tGvD~Is~ 273 (289)
T PRK07896 248 LLESSG-----------------GLTLDTAAAYAETGVDYLAV 273 (289)
T ss_pred EEEEEC-----------------CCCHHHHHHHHhcCCCEEEe
No 365
>PRK13475 ribulose bisphosphate carboxylase; Provisional
Probab=37.30 E-value=83 Score=34.11 Aligned_cols=143 Identities=13% Similarity=0.098 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCCCceeechhhhhcccccccchhhhcCCC-CCCCcccc
Q 013861 243 ETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNP-RFGDKKTY 321 (435)
Q Consensus 243 ~Tv~~Lak~Avs~A~AGADiVAPSDMMDGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRdA~~Sap-~fgDRktY 321 (435)
-|-+.+++++..++..| |+|= |.+++.+-+-+.|.-.+.-+ .+|++.+- .-|.++-|
T Consensus 171 Lsp~~~a~~~ye~~~Gg-D~IK----------------DDE~l~~q~f~p~~eRv~~~-----~~ai~~a~~eTG~~~~y 228 (443)
T PRK13475 171 LRPEPFAEACYDFWLGG-DFIK----------------NDEPQGNQVFAPLKKTVPLV-----ADAMKRAQDETGEAKLF 228 (443)
T ss_pred CCHHHHHHHHHHHHhcC-Cccc----------------ccccccCCCCCCHHHHHHHH-----HHHHHHHHHhhCCceeE
Confidence 46788999999999987 9873 33444333322222211110 01222111 13788899
Q ss_pred CCCCC-C-HHHHHHHHHhcccc-ccc----EEecccCCCcccCCCchHHHHHHHHhh-CCCCeEEEEechHHHHHHHHHH
Q 013861 322 QMNPA-N-YREALVEAQADESE-GAD----ILLFSVLGSQVKPGLPYLDVIRLLRDK-YPLPIAAYQVSGEYSMIKAGGA 393 (435)
Q Consensus 322 Qmdp~-N-~~EAlre~~~D~~E-GAD----ilM~~~~~~~VKPal~YLDIIr~vk~~-~~lPvaaYqVSGEYaMikaAa~ 393 (435)
-+|-. . .+|.++.++.=.++ |++ .+| |-+...=++.++.+++. .++|+-+ |=.|-=++....-.
T Consensus 229 ~~NiTa~~~~em~~ra~~a~e~~G~~~~~~~vm-------v~~~~~G~~al~~lr~~~~~l~iha-HrA~~ga~~r~~~~ 300 (443)
T PRK13475 229 SANITADDHYEMIARGEYILETFGENADHVAFL-------VDGYVAGPGAVTTARRQYPDQYLHY-HRAGHGAVTSPSSK 300 (443)
T ss_pred eccCCCCCHHHHHHHHHHHHHhcCCCccceEEE-------EcCccchHHHHHHHHhcCCCcEEEe-ccccchhhhcCCCC
Confidence 98886 4 78999989888887 999 899 88877779999999984 5899863 22111011000001
Q ss_pred CCCCchhhHHHHHHHHHHHhcccEeeh
Q 013861 394 LKMIDEQRVMMESLMCLRRAGADIILT 420 (435)
Q Consensus 394 ~G~ide~~~v~Esl~~ikRAGAd~IiT 420 (435)
.|+ +. .++ -+-+|=||||.|.+
T Consensus 301 ~Gi-s~--~vl--~Kl~RLaGaD~ih~ 322 (443)
T PRK13475 301 RGY-TA--FVL--SKMARLQGASGIHT 322 (443)
T ss_pred CCE-eH--HHH--HHHHHHcCCCcccc
Confidence 243 22 333 23456699999974
No 366
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=37.05 E-value=4.2e+02 Score=26.14 Aligned_cols=110 Identities=17% Similarity=0.242 Sum_probs=64.0
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCC
Q 013861 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDG 237 (435)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTshGHcGIv~e~g 237 (435)
.+.+.+..+.++||+.|++..= |..++.. .++-..-.-...-|+.||+.++++.|. ++. | ..||.-.-
T Consensus 74 ~l~~~L~~~~~~Gi~nvL~l~G--D~~~~~~-~~~~~~f~~a~~Li~~i~~~~~~f~ig--~a~--~-Peghp~~~---- 141 (272)
T TIGR00676 74 EIREILREYRELGIRHILALRG--DPPKGEG-TPTPGGFNYASELVEFIRNEFGDFDIG--VAA--Y-PEKHPEAP---- 141 (272)
T ss_pred HHHHHHHHHHHCCCCEEEEeCC--CCCCCCC-CCCCCCCCCHHHHHHHHHHhcCCeeEE--EEe--C-CCCCCCCC----
Confidence 4888889999999999996543 2222211 111111112445668888888764332 122 2 33443321
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCch-HHHHHHHHHHCCC
Q 013861 238 VIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGR-VGAIRAALDAEGF 285 (435)
Q Consensus 238 ~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMMDGr-VgAIR~aLD~~Gf 285 (435)
+.++-++.|. .-.+||||.+=.-=--|-. +...++.+.+.|.
T Consensus 142 --~~~~~~~~L~----~K~~aGA~f~iTQ~~fd~~~~~~~~~~~~~~gi 184 (272)
T TIGR00676 142 --NLEEDIENLK----RKVDAGADYAITQLFFDNDDYYRFVDRCRAAGI 184 (272)
T ss_pred --CHHHHHHHHH----HHHHcCCCeEeeccccCHHHHHHHHHHHHHcCC
Confidence 1234455554 3457999988777777744 5567777888885
No 367
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=36.97 E-value=68 Score=32.22 Aligned_cols=86 Identities=16% Similarity=0.138 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCC-CeEEEeeecccCCCCCCcceeecCCCc
Q 013861 160 VQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYP-DLVIYTDVALDPYSSDGHDGIVREDGV 238 (435)
Q Consensus 160 ~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~P-dl~IitDVcLc~YTshGHcGIv~e~g~ 238 (435)
++.++++++.|.++|++=+. . ++.+-.+.++.+..+-.-+ ++-|-..+ ||.| -.+|+.
T Consensus 87 ~e~i~~ai~~Gf~sVmid~s--~----------l~~~eni~~t~~v~~~a~~~gv~Ve~El--------G~~g-g~ed~~ 145 (282)
T TIGR01859 87 YESCIKAIKAGFSSVMIDGS--H----------LPFEENLALTKKVVEIAHAKGVSVEAEL--------GTLG-GIEDGV 145 (282)
T ss_pred HHHHHHHHHcCCCEEEECCC--C----------CCHHHHHHHHHHHHHHHHHcCCEEEEee--------CCCc-Cccccc
Q ss_pred cccHHHHHHHHHHHHHHHHcCCCeecCC
Q 013861 239 IMNDETVHQLCKQAVSQARAGADVVSPS 266 (435)
Q Consensus 239 IdND~Tv~~Lak~Avs~A~AGADiVAPS 266 (435)
+.++.+...+.+..-...+.|+|.+|+|
T Consensus 146 ~g~~~~~t~~eea~~f~~~tgvD~Lavs 173 (282)
T TIGR01859 146 DEKEAELADPDEAEQFVKETGVDYLAAA 173 (282)
T ss_pred cccccccCCHHHHHHHHHHHCcCEEeec
No 368
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=36.83 E-value=5.8e+02 Score=27.63 Aligned_cols=135 Identities=24% Similarity=0.225 Sum_probs=75.6
Q ss_pred HHHHcCCCeecCCCCCCchHHHHHHHHHHCCCC---------Cceeech--hhhhcccccccchhhh-cCCCCCCCcccc
Q 013861 254 SQARAGADVVSPSDMMDGRVGAIRAALDAEGFQ---------HVSIMSY--TAKYASSFYGPFREAL-DSNPRFGDKKTY 321 (435)
Q Consensus 254 s~A~AGADiVAPSDMMDGrVgAIR~aLD~~Gf~---------~v~IMSY--SaKyASafYGPFRdA~-~Sap~fgDRktY 321 (435)
.+.+.|..+|.-|.-|+=.-... .+...|++ ...|+.- ..+.+|.|+||.-..+ ..--.-|--
T Consensus 90 l~le~gV~~ve~sa~~~~~p~~~--~~r~~G~~~~~~g~~~~~~~ViakVsr~evAs~~f~ppp~~~v~~L~~~G~i--- 164 (418)
T cd04742 90 LFLRHGVRVVEASAFMQLTPALV--RYRAKGLRRDADGRVQIANRIIAKVSRPEVAEAFMSPAPERILKKLLAEGKI--- 164 (418)
T ss_pred HHHHcCCCEEEeccccCCCcchh--hHHhcCCcccccccccccceEEEecCChhhhhhhcCCCCHHHHHHHHHcCCC---
Confidence 56678888887776443221111 34455553 1347776 6789999999976433 221111211
Q ss_pred CCCCCCHHHHHHHHHhccccc-ccEEecccCCC--c--ccCCCchHHHHHHHHhhC--------CCCeEEEEechHHHHH
Q 013861 322 QMNPANYREALVEAQADESEG-ADILLFSVLGS--Q--VKPGLPYLDVIRLLRDKY--------PLPIAAYQVSGEYSMI 388 (435)
Q Consensus 322 Qmdp~N~~EAlre~~~D~~EG-ADilM~~~~~~--~--VKPal~YLDIIr~vk~~~--------~lPvaaYqVSGEYaMi 388 (435)
+.+||.... +-| ||.|+.. ..+ . -.|.+.-|-.|.++++.. ++||.|
T Consensus 165 -----t~~eA~~A~----~~g~aD~Ivvq-~EAGGH~g~~~~~~Llp~v~~l~d~v~~~~~~~~~ipViA---------- 224 (418)
T cd04742 165 -----TEEQAELAR----RVPVADDITVE-ADSGGHTDNRPLSVLLPTIIRLRDELAARYGYRRPIRVGA---------- 224 (418)
T ss_pred -----CHHHHHHHH----hCCCCCEEEEc-ccCCCCCCCccHHhHHHHHHHHHHHHhhccccCCCceEEE----------
Confidence 677775544 457 7999822 100 0 123444566666666654 589875
Q ss_pred HHHHHCCCCchhhHHHHHHHHHHHhcccEeehhc
Q 013861 389 KAGGALKMIDEQRVMMESLMCLRRAGADIILTYF 422 (435)
Q Consensus 389 kaAa~~G~ide~~~v~Esl~~ikRAGAd~IiTYf 422 (435)
+=|+-|.+ . +.+..-.|||.|.|=-
T Consensus 225 ----AGGI~tg~-~----vaAA~alGAd~V~~GT 249 (418)
T cd04742 225 ----AGGIGTPE-A----AAAAFALGADFIVTGS 249 (418)
T ss_pred ----ECCCCCHH-H----HHHHHHcCCcEEeecc
Confidence 22444443 3 3345556999888743
No 369
>cd01837 SGNH_plant_lipase_like SGNH_plant_lipase_like, a plant specific subfamily of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=36.82 E-value=79 Score=31.09 Aligned_cols=61 Identities=15% Similarity=0.207 Sum_probs=39.5
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCc-----------Cc-----CCCCCHHHHHHHHHHHCCCe-EEEeee
Q 013861 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDE-----------AY-----NDNGLVPRTIWLLKDRYPDL-VIYTDV 219 (435)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~-----------A~-----~~~g~v~raIr~iK~~~Pdl-~IitDV 219 (435)
.+.+.|++|.++|.+.|++++. |+--.-+.... .. .-|..+.+.++.+++.+|++ +++.|+
T Consensus 165 ~i~~~v~~L~~~GAr~~~v~~l-pplgc~P~~~~~~~~~~~~c~~~~n~~~~~~N~~L~~~l~~l~~~~~~~~i~~~D~ 242 (315)
T cd01837 165 NISSAIKRLYDLGARKFVVPGL-GPLGCLPSQRTLFGGDGGGCLEELNELARLFNAKLKKLLAELRRELPGAKFVYADI 242 (315)
T ss_pred HHHHHHHHHHhCCCcEEEecCC-CCcCccHHHHhhcCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeh
Confidence 4777899999999999999985 65323222111 01 12345667788888888885 445554
No 370
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=36.79 E-value=1.6e+02 Score=29.95 Aligned_cols=39 Identities=23% Similarity=0.285 Sum_probs=27.8
Q ss_pred cccccEEeccc-CCCcccCCCchHHHHHHHHhhCCCCeEE
Q 013861 340 SEGADILLFSV-LGSQVKPGLPYLDVIRLLRDKYPLPIAA 378 (435)
Q Consensus 340 ~EGADilM~~~-~~~~VKPal~YLDIIr~vk~~~~lPvaa 378 (435)
+.|+|.|.+.. ...|..-+.+.+|.|+++|+++++||.+
T Consensus 160 ~~G~d~i~vh~rt~~~~~~G~a~~~~i~~ik~~~~iPVI~ 199 (321)
T PRK10415 160 DCGIQALTIHGRTRACLFNGEAEYDSIRAVKQKVSIPVIA 199 (321)
T ss_pred HhCCCEEEEecCccccccCCCcChHHHHHHHHhcCCcEEE
Confidence 67999997322 1123323446799999999999999876
No 371
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=36.77 E-value=1.6e+02 Score=27.20 Aligned_cols=98 Identities=18% Similarity=0.200 Sum_probs=57.9
Q ss_pred cCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCc-hHHHHHHHHhhCCCCe-EEEEechHHHHHHHHHHCCC--
Q 013861 321 YQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLP-YLDVIRLLRDKYPLPI-AAYQVSGEYSMIKAGGALKM-- 396 (435)
Q Consensus 321 YQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~-YLDIIr~vk~~~~lPv-aaYqVSGEYaMikaAa~~G~-- 396 (435)
|-+|+.+..|.++++. +-|+|.|=|.+-...+-|..+ .++.++.+++.++.|+ +..-|.+...-+..+.+.|.
T Consensus 11 ~~~~~~~~~~~~~~~~---~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~v~l~v~d~~~~i~~~~~~g~d~ 87 (220)
T PRK05581 11 LSADFARLGEEVKAVE---AAGADWIHVDVMDGHFVPNLTIGPPVVEAIRKVTKLPLDVHLMVENPDRYVPDFAKAGADI 87 (220)
T ss_pred hcCCHHHHHHHHHHHH---HcCCCEEEEeCccCCcCCCcCcCHHHHHHHHhcCCCcEEEEeeeCCHHHHHHHHHHcCCCE
Confidence 4566767777666655 578999885433333444444 5899999998765444 22444452222333334442
Q ss_pred ---Cch-hhHHHHHHHHHHHhcccEeehh
Q 013861 397 ---IDE-QRVMMESLMCLRRAGADIILTY 421 (435)
Q Consensus 397 ---ide-~~~v~Esl~~ikRAGAd~IiTY 421 (435)
-++ .....+.+..++..|..++++-
T Consensus 88 v~vh~~~~~~~~~~~~~~~~~~~~~g~~~ 116 (220)
T PRK05581 88 ITFHVEASEHIHRLLQLIKSAGIKAGLVL 116 (220)
T ss_pred EEEeeccchhHHHHHHHHHHcCCEEEEEE
Confidence 222 2345566778888888877754
No 372
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=36.74 E-value=54 Score=31.74 Aligned_cols=66 Identities=21% Similarity=0.430 Sum_probs=45.7
Q ss_pred CcccCCCCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEe--e
Q 013861 141 DTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYT--D 218 (435)
Q Consensus 141 ~~~I~sMPGv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~Iit--D 218 (435)
+..|..+||+. -..|+.++++.|.+-|.|||- .. .| =..-++.||.-||++-++. -
T Consensus 106 ~~~i~~iPG~~-------TptEi~~a~~~Ga~~vKlFPa--~~----~g---------g~~~lk~l~~p~p~~~~~ptGG 163 (212)
T PRK05718 106 EGPIPLIPGVS-------TPSELMLGMELGLRTFKFFPA--EA----SG---------GVKMLKALAGPFPDVRFCPTGG 163 (212)
T ss_pred HcCCCEeCCCC-------CHHHHHHHHHCCCCEEEEccc--hh----cc---------CHHHHHHHhccCCCCeEEEeCC
Confidence 35889999992 245689999999999999984 11 01 1356888999999865542 2
Q ss_pred e---cccCCCCCC
Q 013861 219 V---ALDPYSSDG 228 (435)
Q Consensus 219 V---cLc~YTshG 228 (435)
| .+.+|-..|
T Consensus 164 V~~~ni~~~l~ag 176 (212)
T PRK05718 164 ISPANYRDYLALP 176 (212)
T ss_pred CCHHHHHHHHhCC
Confidence 2 345566666
No 373
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=36.62 E-value=83 Score=30.92 Aligned_cols=40 Identities=23% Similarity=0.236 Sum_probs=26.8
Q ss_pred HHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEeeh
Q 013861 362 LDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILT 420 (435)
Q Consensus 362 LDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G~ide~~~v~Esl~~ikRAGAd~IiT 420 (435)
++.++++++..++||.+ .|-+..-+-+.|.| ++|||.|--
T Consensus 223 l~~v~~i~~~~~ipvi~---------------~GGI~s~~da~~~l----~~GAd~V~i 262 (300)
T TIGR01037 223 LRMVYDVYKMVDIPIIG---------------VGGITSFEDALEFL----MAGASAVQV 262 (300)
T ss_pred HHHHHHHHhcCCCCEEE---------------ECCCCCHHHHHHHH----HcCCCceee
Confidence 68999999999999875 34443333334443 578988653
No 374
>PLN02229 alpha-galactosidase
Probab=36.50 E-value=2.2e+02 Score=30.91 Aligned_cols=117 Identities=21% Similarity=0.197 Sum_probs=73.2
Q ss_pred ceeechhhhHHHHHHH------HHHcCCCeEEEeecCCC----CCCCcccCcCcCC----CCCHHHHHHHHHHHCCCeEE
Q 013861 150 CYRLGWRHGLVQEVAK------ARDVGVNSVVLFPKVPD----ALKSPTGDEAYND----NGLVPRTIWLLKDRYPDLVI 215 (435)
Q Consensus 150 v~r~s~~~~l~~~v~~------~~~~GI~sv~LFgvi~~----~~Kd~~Gs~A~~~----~g~v~raIr~iK~~~Pdl~I 215 (435)
.|...+++..+++..+ +.++|.+-|.| ++ ..+|+.|.--.|+ +| +..-...|+++-=...|
T Consensus 72 ~~~~~i~E~~i~~~ad~~v~~Gl~~~Gy~yv~i----DDgW~~~~rd~~G~l~~d~~rFP~G-~k~ladyiH~~GlKfGI 146 (427)
T PLN02229 72 FFACNINETVIKETADALVSTGLADLGYIHVNI----DDCWSNLKRDSKGQLVPDPKTFPSG-IKLLADYVHSKGLKLGI 146 (427)
T ss_pred hhCcccCHHHHHHHHHHHHHhHHHhCCCEEEEE----cCCcCCCCcCCCCCEEEChhhcCCc-HHHHHHHHHHCCCceEE
Confidence 3444455555555444 37788888776 33 1367777654454 45 34456667777678899
Q ss_pred EeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeec------CCCCCCchHHHHHHHHHHCCC
Q 013861 216 YTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVS------PSDMMDGRVGAIRAALDAEGF 285 (435)
Q Consensus 216 itDVcLc~YTshGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVA------PSDMMDGrVgAIR~aLD~~Gf 285 (435)
++|.... |=.|+-|-+ |.-..| |-.+|+=|.|.|= +..-+..++.++|+||++.|-
T Consensus 147 y~d~G~~--TC~~~pGS~---g~e~~D---------A~~fA~WGVDylK~D~C~~~~~~~~~~y~~m~~AL~~tGR 208 (427)
T PLN02229 147 YSDAGVF--TCQVRPGSL---FHEVDD---------ADIFASWGVDYLKYDNCYNLGIKPIERYPPMRDALNATGR 208 (427)
T ss_pred eccCCCc--ccCCCCCCc---cHHHHH---------HHHHHHcCCCEEEecCCCCCCcchhHHHHHHHHHHHhhCC
Confidence 9987632 223444443 222222 7779999999883 333367789999999999984
No 375
>COG0176 MipB Transaldolase [Carbohydrate transport and metabolism]
Probab=36.48 E-value=33 Score=34.30 Aligned_cols=89 Identities=22% Similarity=0.308 Sum_probs=51.7
Q ss_pred cCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCccee--ecCCCccccHHHHHHHHHHHHHHHHcCCCeecC--CCC
Q 013861 193 YNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGI--VREDGVIMNDETVHQLCKQAVSQARAGADVVSP--SDM 268 (435)
Q Consensus 193 ~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTshGHcGI--v~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAP--SDM 268 (435)
+|-++.+.+|.++.| .+|+..|+.=+ |-|..|-.-+ +..+| |.-.-|+=.-..||+.-|+|||++||| +-|
T Consensus 73 ~d~e~mi~eA~~L~~-~~~~~~i~IKI---P~T~eGl~Ai~~L~~eG-I~~NvTLiFS~~QAl~aa~aga~~iSpFvgRi 147 (239)
T COG0176 73 FDAEAMIEEARRLAK-LIDNVGIVIKI---PATWEGLKAIKALEAEG-IKTNVTLIFSAAQALLAAEAGATYISPFVGRI 147 (239)
T ss_pred ccHHHHHHHHHHHHH-hcCcCCeEEEe---CCCHHHHHHHHHHHHCC-CeeeEEEEecHHHHHHHHHhCCeEEEeecchH
Confidence 455566666665554 34555333222 4455553222 22344 444456666677899999999999999 222
Q ss_pred CC------chHHHHHHHHHHCCCC
Q 013861 269 MD------GRVGAIRAALDAEGFQ 286 (435)
Q Consensus 269 MD------GrVgAIR~aLD~~Gf~ 286 (435)
.| +-|..+|++++..+..
T Consensus 148 ~D~~~d~~~~I~~~~~iy~~y~~~ 171 (239)
T COG0176 148 DDWGIDGMLGIAEAREIYDYYKQH 171 (239)
T ss_pred HhhccCchHHHHHHHHHHHHhccc
Confidence 32 2366667777666554
No 376
>PRK13575 3-dehydroquinate dehydratase; Provisional
Probab=36.31 E-value=1.6e+02 Score=28.98 Aligned_cols=93 Identities=15% Similarity=0.288 Sum_probs=52.9
Q ss_pred HHHHHHHHHhcccccccEEecccCCCccc-CCC-chHHHHHHHHhh-CCCCeE-EE---------Eech-HH-HHHHHHH
Q 013861 328 YREALVEAQADESEGADILLFSVLGSQVK-PGL-PYLDVIRLLRDK-YPLPIA-AY---------QVSG-EY-SMIKAGG 392 (435)
Q Consensus 328 ~~EAlre~~~D~~EGADilM~~~~~~~VK-Pal-~YLDIIr~vk~~-~~lPva-aY---------qVSG-EY-aMikaAa 392 (435)
..|.+......-.++||+|=+-+ ...+ +.. ...++++.+++. .++|+. .| +.|- || ..++.++
T Consensus 16 ~~~~~~~~~~~~~~~~D~vElRl--D~l~~~~~~~~~~~i~~l~~~~~~~p~I~T~Rt~~EGG~~~~~~~~~~~ll~~~~ 93 (238)
T PRK13575 16 IEETLIQKINHRIDAIDIIELRI--DQWENVTVDQLAEMITKLKVLQDSFKLLVTYRTKLQGGYGQFTNDLYLNLLSDLA 93 (238)
T ss_pred cchhHHHHHHhcCCCCCEEEEEe--ccccCCCHHHHHHHHHHHHhhcCCCCEEEEeCChhhCCCCCCCHHHHHHHHHHHH
Confidence 45555545555568899882100 0011 111 234577777775 467763 33 3432 23 4556566
Q ss_pred HCC---CCchh-------hHHHHHHHHHHHhcccEeehhc
Q 013861 393 ALK---MIDEQ-------RVMMESLMCLRRAGADIILTYF 422 (435)
Q Consensus 393 ~~G---~ide~-------~~v~Esl~~ikRAGAd~IiTYf 422 (435)
..+ ++|-| +.+-|.+..+++.|..+|++|+
T Consensus 94 ~~~~~d~vDiE~~~~~~~~~~~~l~~~~~~~~~~vI~S~H 133 (238)
T PRK13575 94 NINGIDMIDIEWQADIDIEKHQRLITHLQQYNKEVVISHH 133 (238)
T ss_pred HhCCCCEEEEEcccCCChHHHHHHHHHHHHcCCEEEEecC
Confidence 554 55554 3345556677889999999999
No 377
>PRK07534 methionine synthase I; Validated
Probab=36.30 E-value=29 Score=35.60 Aligned_cols=24 Identities=33% Similarity=0.329 Sum_probs=21.9
Q ss_pred CchhhHHHHHHHHHHHhcccEeeh
Q 013861 397 IDEQRVMMESLMCLRRAGADIILT 420 (435)
Q Consensus 397 ide~~~v~Esl~~ikRAGAd~IiT 420 (435)
++..+.|.+.+..+.+||||+|+|
T Consensus 41 i~~Pe~V~~vH~~Yl~AGAdiI~T 64 (336)
T PRK07534 41 EDHPDNITALHQGFVDAGSDIILT 64 (336)
T ss_pred ccCHHHHHHHHHHHHHhcCCEEEe
Confidence 567789999999999999999986
No 378
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=36.24 E-value=61 Score=35.40 Aligned_cols=45 Identities=29% Similarity=0.501 Sum_probs=34.1
Q ss_pred HHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHH-HHHHHHHHHCCCeEEEe
Q 013861 159 LVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVP-RTIWLLKDRYPDLVIYT 217 (435)
Q Consensus 159 l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~-raIr~iK~~~Pdl~Iit 217 (435)
=...++-+++.|++-|+| |. ..|. +..| .-|+.||++||++-||+
T Consensus 252 dK~rl~ll~~aGvdvviL-----DS---SqGn------S~~qiemik~iK~~yP~l~Via 297 (503)
T KOG2550|consen 252 DKERLDLLVQAGVDVVIL-----DS---SQGN------SIYQLEMIKYIKETYPDLQIIA 297 (503)
T ss_pred hhHHHHHhhhcCCcEEEE-----ec---CCCc------chhHHHHHHHHHhhCCCceeec
Confidence 366788899999999988 21 1233 4444 78999999999999885
No 379
>PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria [].; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F.
Probab=36.19 E-value=42 Score=35.98 Aligned_cols=29 Identities=21% Similarity=0.483 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHCCCeEEEeeecccCCCCC
Q 013861 199 VPRTIWLLKDRYPDLVIYTDVALDPYSSD 227 (435)
Q Consensus 199 v~raIr~iK~~~Pdl~IitDVcLc~YTsh 227 (435)
+.++|+.+|+..||++|+.|=|--||+..
T Consensus 177 I~~~i~~vk~~~p~~iifVDNCYGEFvE~ 205 (403)
T PF06838_consen 177 IKEIIKFVKEINPDVIIFVDNCYGEFVET 205 (403)
T ss_dssp HHHHHHHHHHH-TTSEEEEE-TTTTTTSS
T ss_pred HHHHHHHHHhhCCCeEEEEeCCcceeccc
Confidence 45899999999999999999999999754
No 380
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=35.94 E-value=2.7e+02 Score=27.57 Aligned_cols=109 Identities=14% Similarity=0.189 Sum_probs=62.6
Q ss_pred echhhhHHHHHHHHHH-cCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCC-CeEEEeeecccCCCCCCcc
Q 013861 153 LGWRHGLVQEVAKARD-VGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYP-DLVIYTDVALDPYSSDGHD 230 (435)
Q Consensus 153 ~s~~~~l~~~v~~~~~-~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~P-dl~IitDVcLc~YTshGHc 230 (435)
+..+ .+.+.++.+++ .|++.+++.|.. |+...=...=-.+.++...+..+ .+-||+=|
T Consensus 21 iD~~-~~~~li~~l~~~~Gv~gi~v~Gst--------GE~~~Ls~eEr~~~~~~~~~~~~~~~~viagv----------- 80 (293)
T PRK04147 21 IDEQ-GLRRLVRFNIEKQGIDGLYVGGST--------GEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQV----------- 80 (293)
T ss_pred cCHH-HHHHHHHHHHhcCCCCEEEECCCc--------cccccCCHHHHHHHHHHHHHHhCCCCCEEecC-----------
Confidence 3443 58899999999 999999999952 22111111112234444444433 24344321
Q ss_pred eeecCCCccccHHHHHHHHHHHHHHHHcCCCeec---CCC---CCCchHHHHHHHHHHCCCCCceeechh
Q 013861 231 GIVREDGVIMNDETVHQLCKQAVSQARAGADVVS---PSD---MMDGRVGAIRAALDAEGFQHVSIMSYT 294 (435)
Q Consensus 231 GIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVA---PSD---MMDGrVgAIR~aLD~~Gf~~v~IMSYS 294 (435)
|. .+.+...++|-...++|||.|. |.- .-|+-+...++..+.. +.+||-|-
T Consensus 81 ------g~----~~t~~ai~~a~~a~~~Gad~v~v~~P~y~~~~~~~l~~~f~~va~a~---~lPv~iYn 137 (293)
T PRK04147 81 ------GS----VNTAEAQELAKYATELGYDAISAVTPFYYPFSFEEICDYYREIIDSA---DNPMIVYN 137 (293)
T ss_pred ------CC----CCHHHHHHHHHHHHHcCCCEEEEeCCcCCCCCHHHHHHHHHHHHHhC---CCCEEEEe
Confidence 11 1233334455555788998653 321 1267777888877764 57898884
No 381
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=35.91 E-value=1.3e+02 Score=26.56 Aligned_cols=134 Identities=13% Similarity=0.073 Sum_probs=63.0
Q ss_pred HHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHH-CCCeEEEeeecccCCCCCCccee--------
Q 013861 162 EVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDR-YPDLVIYTDVALDPYSSDGHDGI-------- 232 (435)
Q Consensus 162 ~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~-~Pdl~IitDVcLc~YTshGHcGI-------- 232 (435)
.++.+.+.|++-|.+-.. ++ ..+....-..|.......+.+.+++. +-.+.++.+.--..++...=.|+
T Consensus 71 ~~~~l~~~~ip~v~~~~~-~~-~~~~~~~v~~d~~~~~~~~~~~l~~~g~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~ 148 (264)
T cd01537 71 IVKLARKAGIPVVLVDRD-IP-DGDRVPSVGSDNEQAGYLAGEHLAEKGHRRIALLAGPLGSSTARERVAGFKDALKEAG 148 (264)
T ss_pred HHHHhhhcCCCEEEeccC-CC-CCcccceEecCcHHHHHHHHHHHHHhcCCcEEEEECCCCCCcHHHHHHHHHHHHHHcC
Confidence 456666777776655332 21 11222233334445555666666654 34566665422111211000111
Q ss_pred -ecCCCccccHHHHHHHHHHHHHHHHcC--CC-eecCCCCCCchHHHHHHHHHHCCC---CCceeechhhhhccc
Q 013861 233 -VREDGVIMNDETVHQLCKQAVSQARAG--AD-VVSPSDMMDGRVGAIRAALDAEGF---QHVSIMSYTAKYASS 300 (435)
Q Consensus 233 -v~e~g~IdND~Tv~~Lak~Avs~A~AG--AD-iVAPSDMMDGrVgAIR~aLD~~Gf---~~v~IMSYSaKyASa 300 (435)
+.....+..+.+.+...+.....-++| +| +++++|.+.- + +-+++.+.|. .++.|+++-..-.+.
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~a~--~-~~~~~~~~g~~i~~~i~i~~~d~~~~~~ 220 (264)
T cd01537 149 PIEIVLVQEGDWDAEKGYQAAEELLTAHPDPTAIFAANDDMAL--G-ALRALREAGLRVPDDISVIGFDGTPEAL 220 (264)
T ss_pred CcChhhhccCCCCHHHHHHHHHHHHhcCCCCCEEEEcCcHHHH--H-HHHHHHHhCCCCCCCeEEEeecCccHHH
Confidence 000011111222222333333444556 66 6777776432 2 3456888898 589999997654443
No 382
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=35.73 E-value=2.1e+02 Score=27.90 Aligned_cols=110 Identities=11% Similarity=0.165 Sum_probs=63.8
Q ss_pred eechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCC-CeEEEeeecccCCCCCCcc
Q 013861 152 RLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYP-DLVIYTDVALDPYSSDGHD 230 (435)
Q Consensus 152 r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~P-dl~IitDVcLc~YTshGHc 230 (435)
++.++ .+.+.++.+++.|++.+++.|... +...=...=-.+.++...+... ++.||+=|+
T Consensus 17 ~iD~~-~~~~~i~~l~~~Gv~gl~v~GstG--------E~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~---------- 77 (284)
T cd00950 17 SVDFD-ALERLIEFQIENGTDGLVVCGTTG--------ESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTG---------- 77 (284)
T ss_pred CcCHH-HHHHHHHHHHHcCCCEEEECCCCc--------chhhCCHHHHHHHHHHHHHHhCCCCcEEeccC----------
Confidence 45554 589999999999999999998632 2211111122344555544443 344442111
Q ss_pred eeecCCCccccHHHHHHHHHHHHHHHHcCCCee--cCCCCC----CchHHHHHHHHHHCCCCCceeechh
Q 013861 231 GIVREDGVIMNDETVHQLCKQAVSQARAGADVV--SPSDMM----DGRVGAIRAALDAEGFQHVSIMSYT 294 (435)
Q Consensus 231 GIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiV--APSDMM----DGrVgAIR~aLD~~Gf~~v~IMSYS 294 (435)
..|.+...++|-...++|||.| .|-.+. |+-+...|+..+. .+.+|+=|-
T Consensus 78 -----------~~~~~~~~~~a~~a~~~G~d~v~~~~P~~~~~~~~~l~~~~~~ia~~---~~~pi~lYn 133 (284)
T cd00950 78 -----------SNNTAEAIELTKRAEKAGADAALVVTPYYNKPSQEGLYAHFKAIAEA---TDLPVILYN 133 (284)
T ss_pred -----------CccHHHHHHHHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHhc---CCCCEEEEE
Confidence 1133344566666688899933 333222 4666677777765 468888773
No 383
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=35.73 E-value=1.7e+02 Score=26.96 Aligned_cols=66 Identities=12% Similarity=0.173 Sum_probs=48.3
Q ss_pred CCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhh-CCCCeEEEEechHHHHHHHHHHCCCCc
Q 013861 326 ANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDK-YPLPIAAYQVSGEYSMIKAGGALKMID 398 (435)
Q Consensus 326 ~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~-~~lPvaaYqVSGEYaMikaAa~~G~id 398 (435)
.|..||+.... +...|+++... --|++.-+++++.+++. .+.||....-..+...+..+.+.|..+
T Consensus 37 ~~~~~al~~~~---~~~pdlvllD~----~mp~~~gle~~~~l~~~~~~~~iivls~~~~~~~~~~al~~Ga~~ 103 (225)
T PRK10046 37 GNLAQARMMIE---RFKPGLILLDN----YLPDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFD 103 (225)
T ss_pred CCHHHHHHHHH---hcCCCEEEEeC----CCCCCcHHHHHHHHHhcCCCCCEEEEEcCCCHHHHHHHHHcCccE
Confidence 57788877765 35689988211 24778889999999985 468888887777777777787777543
No 384
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=35.66 E-value=3.8e+02 Score=25.16 Aligned_cols=97 Identities=25% Similarity=0.311 Sum_probs=54.8
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCC
Q 013861 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDG 237 (435)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTshGHcGIv~e~g 237 (435)
..+.++++++++|...|-+-..+. ..|+. ...-+.+=|..+++...++.+.. |+ +.+
T Consensus 70 ~k~~eve~A~~~GAdevdvv~~~g-~~~~~-------~~~~~~~ei~~v~~~~~g~~lkv--------------I~-e~~ 126 (203)
T cd00959 70 VKVAEAREAIADGADEIDMVINIG-ALKSG-------DYEAVYEEIAAVVEACGGAPLKV--------------IL-ETG 126 (203)
T ss_pred HHHHHHHHHHHcCCCEEEEeecHH-HHhCC-------CHHHHHHHHHHHHHhcCCCeEEE--------------EE-ecC
Confidence 578899999999999998844322 12211 11334445666666543322211 11 233
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC------chHHHHHHHHH
Q 013861 238 VIMNDETVHQLCKQAVSQARAGADVVSPSDMMD------GRVGAIRAALD 281 (435)
Q Consensus 238 ~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMMD------GrVgAIR~aLD 281 (435)
.. +|+.+...+++ -.++|||+|--|-=-- +.|..+++.+.
T Consensus 127 ~l-~~~~i~~a~ri---a~e~GaD~IKTsTG~~~~~at~~~v~~~~~~~~ 172 (203)
T cd00959 127 LL-TDEEIIKACEI---AIEAGADFIKTSTGFGPGGATVEDVKLMKEAVG 172 (203)
T ss_pred CC-CHHHHHHHHHH---HHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHhC
Confidence 33 35556555555 4688999998872112 44555666554
No 385
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=35.63 E-value=53 Score=33.40 Aligned_cols=88 Identities=16% Similarity=0.211 Sum_probs=51.9
Q ss_pred cchhhhcCCCCC-CCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhCC--CCeEEEE
Q 013861 304 PFREALDSNPRF-GDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYP--LPIAAYQ 380 (435)
Q Consensus 304 PFRdA~~Sap~f-gDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~~--lPvaaYq 380 (435)
.+++|+..+-++ +.++ =++...|.+||...+ +-|||+|| .- -.-.+-++++.+..+ -|=..-.
T Consensus 175 ~i~~av~~~r~~~~~~k-IeVEv~tleqa~ea~----~agaDiI~-------LD--n~~~e~l~~av~~~~~~~~~~~le 240 (284)
T PRK06096 175 DWSGAINQLRRHAPEKK-IVVEADTPKEAIAAL----RAQPDVLQ-------LD--KFSPQQATEIAQIAPSLAPHCTLS 240 (284)
T ss_pred cHHHHHHHHHHhCCCCC-EEEECCCHHHHHHHH----HcCCCEEE-------EC--CCCHHHHHHHHHHhhccCCCeEEE
Confidence 566665544332 2344 788888888877665 57999999 32 223344444433211 1222334
Q ss_pred echHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEeehhc
Q 013861 381 VSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTYF 422 (435)
Q Consensus 381 VSGEYaMikaAa~~G~ide~~~v~Esl~~ikRAGAd~IiTYf 422 (435)
+| |-++ .|.+..+...|+|+|.|-.
T Consensus 241 aS------------GGI~-----~~ni~~yA~tGvD~Is~ga 265 (284)
T PRK06096 241 LA------------GGIN-----LNTLKNYADCGIRLFITSA 265 (284)
T ss_pred EE------------CCCC-----HHHHHHHHhcCCCEEEECc
Confidence 44 4455 4667788999999998743
No 386
>PRK14017 galactonate dehydratase; Provisional
Probab=35.62 E-value=4.6e+02 Score=26.95 Aligned_cols=128 Identities=12% Similarity=0.118 Sum_probs=76.5
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcC-CCCC--HHHHHHHHHHHC-CCeEEEeeecccCCCCCC-----
Q 013861 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYN-DNGL--VPRTIWLLKDRY-PDLVIYTDVALDPYSSDG----- 228 (435)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~-~~g~--v~raIr~iK~~~-Pdl~IitDVcLc~YTshG----- 228 (435)
.++++++++++.|.+.+-+= +. .|+. . .+ +.++ -.+-|+++++.+ ||+.++.|.+ ..||-+.
T Consensus 127 ~~~~~a~~~~~~Gf~~~KiK--v~--~~~~--~--~~~~~~~~~d~~~i~avr~~~g~~~~l~vDaN-~~w~~~~A~~~~ 197 (382)
T PRK14017 127 DVAEAARARVERGFTAVKMN--GT--EELQ--Y--IDSPRKVDAAVARVAAVREAVGPEIGIGVDFH-GRVHKPMAKVLA 197 (382)
T ss_pred HHHHHHHHHHHcCCCEEEEc--Cc--CCcc--c--cccHHHHHHHHHHHHHHHHHhCCCCeEEEECC-CCCCHHHHHHHH
Confidence 58899999999999999882 21 1110 0 00 0011 145688889998 6899999997 5675421
Q ss_pred ------cceeecCCCccccHHHHHHHHHH----------------HHHHH-HcCCCeecCCCCCCchHHHHHHHHHHCCC
Q 013861 229 ------HDGIVREDGVIMNDETVHQLCKQ----------------AVSQA-RAGADVVSPSDMMDGRVGAIRAALDAEGF 285 (435)
Q Consensus 229 ------HcGIv~e~g~IdND~Tv~~Lak~----------------Avs~A-~AGADiVAPSDMMDGrVgAIR~aLD~~Gf 285 (435)
..-.+.|-=..+|-+.+..|.++ ..... ..++|+|-|-=+.-|=|...++..+-+--
T Consensus 198 ~~l~~~~~~~iEeP~~~~d~~~~~~L~~~~~~pIa~dEs~~~~~~~~~li~~~a~d~v~~d~~~~GGit~~~~ia~~A~~ 277 (382)
T PRK14017 198 KELEPYRPMFIEEPVLPENAEALPEIAAQTSIPIATGERLFSRWDFKRVLEAGGVDIIQPDLSHAGGITECRKIAAMAEA 277 (382)
T ss_pred HhhcccCCCeEECCCCcCCHHHHHHHHhcCCCCEEeCCccCCHHHHHHHHHcCCCCeEecCccccCCHHHHHHHHHHHHH
Confidence 11122221122344555555541 22222 33599999998888877777766665544
Q ss_pred CCceeechh
Q 013861 286 QHVSIMSYT 294 (435)
Q Consensus 286 ~~v~IMSYS 294 (435)
.++.+|.++
T Consensus 278 ~gi~~~~h~ 286 (382)
T PRK14017 278 YDVALAPHC 286 (382)
T ss_pred cCCeEeecC
Confidence 466676654
No 387
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=35.42 E-value=59 Score=30.30 Aligned_cols=43 Identities=23% Similarity=0.305 Sum_probs=29.6
Q ss_pred CCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCch-----HHHHHHHHhhCCCC
Q 013861 323 MNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPY-----LDVIRLLRDKYPLP 375 (435)
Q Consensus 323 mdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~Y-----LDIIr~vk~~~~lP 375 (435)
+|..+.+||++-+. .+ .+.. .. |||+++. +++|+.+|+.+.+|
T Consensus 10 lD~~~~~~~~~~~~-~~-~~~~-~~-------vk~g~~l~~~~G~~~v~~ir~~~~i~ 57 (215)
T PRK13813 10 LDVTDRERALKIAE-EL-DDYV-DA-------IKVGWPLVLASGLGIIEELKRYAPVI 57 (215)
T ss_pred eCCCCHHHHHHHHH-hc-cccC-CE-------EEEcHHHHHhhCHHHHHHHHhcCCEE
Confidence 67888898877553 22 2222 47 8999865 68899999876444
No 388
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=35.35 E-value=3.4e+02 Score=24.55 Aligned_cols=81 Identities=14% Similarity=0.218 Sum_probs=53.6
Q ss_pred CCCHHHHHHHHHhcccccccEEecccCCCcccCC---CchHHHHHHHHhhC-CCCeEEEEechHHHHHHHHHHCCCCch-
Q 013861 325 PANYREALVEAQADESEGADILLFSVLGSQVKPG---LPYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMIDE- 399 (435)
Q Consensus 325 p~N~~EAlre~~~D~~EGADilM~~~~~~~VKPa---l~YLDIIr~vk~~~-~lPvaaYqVSGEYaMikaAa~~G~ide- 399 (435)
..|..+++..... ...|++++.. --|+ ..=+|+++.+++.. ..|+..+--..+...+..|.+.|..+.
T Consensus 35 ~~~~~~~~~~~~~---~~~DlvllD~----~l~~~~~~~g~~~~~~l~~~~~~~~iIvls~~~~~~~~~~a~~~Ga~~yl 107 (216)
T PRK10840 35 FEDSTALINNLPK---LDAHVLITDL----SMPGDKYGDGITLIKYIKRHFPSLSIIVLTMNNNPAILSAVLDLDIEGIV 107 (216)
T ss_pred ECCHHHHHHHHHh---CCCCEEEEeC----cCCCCCCCCHHHHHHHHHHHCCCCcEEEEEecCCHHHHHHHHHCCCeEEE
Confidence 3577777765432 4589998211 1244 24589999998765 589999988888888888888876432
Q ss_pred -----hhHHHHHHHHHHH
Q 013861 400 -----QRVMMESLMCLRR 412 (435)
Q Consensus 400 -----~~~v~Esl~~ikR 412 (435)
...+.+++..+..
T Consensus 108 ~K~~~~~~l~~ai~~v~~ 125 (216)
T PRK10840 108 LKQGAPTDLPKALAALQK 125 (216)
T ss_pred ECCCCHHHHHHHHHHHHC
Confidence 2345555555443
No 389
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=35.20 E-value=98 Score=34.12 Aligned_cols=82 Identities=26% Similarity=0.281 Sum_probs=55.8
Q ss_pred CCCCHHHHHHHHHhcccccccEEecccCCCccc--C-CCchHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchh
Q 013861 324 NPANYREALVEAQADESEGADILLFSVLGSQVK--P-GLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQ 400 (435)
Q Consensus 324 dp~N~~EAlre~~~D~~EGADilM~~~~~~~VK--P-al~YLDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G~ide~ 400 (435)
++.+..+.+.-+..=.++|||-|.|--|-..-. + -.+.+|+|+++.++..+|+. |-| |.=+.+
T Consensus 262 ~~~~~gdPve~a~~y~~~Gadel~~~Di~~~~~~~~~~~~~~~~i~~i~~~~~ip~~---vGG-----------GIr~~~ 327 (538)
T PLN02617 262 EVRNLGKPVELAGQYYKDGADEVAFLNITGFRDFPLGDLPMLEVLRRASENVFVPLT---VGG-----------GIRDFT 327 (538)
T ss_pred CCCcCCCHHHHHHHHHHcCCCEEEEEECCCCcCCcccchhHHHHHHHHHhhCCCCEE---EcC-----------Cccccc
Confidence 566666666666666689999988766543211 1 23469999999999999984 433 221211
Q ss_pred h------HHHHHHHHHHHhcccEee
Q 013861 401 R------VMMESLMCLRRAGADIIL 419 (435)
Q Consensus 401 ~------~v~Esl~~ikRAGAd~Ii 419 (435)
. -.+|....+.++|||-|+
T Consensus 328 d~~~~~~~~~e~~~~~l~~GadkV~ 352 (538)
T PLN02617 328 DANGRYYSSLEVASEYFRSGADKIS 352 (538)
T ss_pred cccccccchHHHHHHHHHcCCCEEE
Confidence 1 247889999999999665
No 390
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=34.83 E-value=1e+02 Score=33.01 Aligned_cols=50 Identities=14% Similarity=0.260 Sum_probs=34.9
Q ss_pred HHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhC-CCCeEEEEe
Q 013861 329 REALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKY-PLPIAAYQV 381 (435)
Q Consensus 329 ~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~-~lPvaaYqV 381 (435)
.+.+.++..=++.|+|+|.+-.-. -.+....++|+.+|+++ +++|.+=+|
T Consensus 152 ~~~~~~v~~lv~aGvDvI~iD~a~---g~~~~~~~~v~~ik~~~p~~~vi~g~V 202 (404)
T PRK06843 152 IDTIERVEELVKAHVDILVIDSAH---GHSTRIIELVKKIKTKYPNLDLIAGNI 202 (404)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCC---CCChhHHHHHHHHHhhCCCCcEEEEec
Confidence 455666666678999999832211 11445679999999999 599877666
No 391
>cd00439 Transaldolase Transaldolase. Enzymes found in the non-oxidative branch of the pentose phosphate pathway, that catalyze the reversible transfer of a dihydroxyacetone group from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. They are members of the class I aldolases, who are characterized by using a Schiff-base mechanism for stabilization of the reaction intermediates.
Probab=34.76 E-value=77 Score=31.39 Aligned_cols=23 Identities=35% Similarity=0.258 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHcCCCeecC
Q 013861 243 ETVHQLCKQAVSQARAGADVVSP 265 (435)
Q Consensus 243 ~Tv~~Lak~Avs~A~AGADiVAP 265 (435)
.|+-.-.+||+.-|+|||++|||
T Consensus 144 ~T~vfs~~Qa~~aa~Aga~~isp 166 (252)
T cd00439 144 VTLIFSIAQYEAVADAGTSVASP 166 (252)
T ss_pred eeeecCHHHHHHHHHcCCCEEEE
Confidence 44445568999999999999999
No 392
>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC
Probab=34.69 E-value=1.4e+02 Score=26.91 Aligned_cols=95 Identities=18% Similarity=0.295 Sum_probs=50.1
Q ss_pred CCCceeechhhhhcccccccchhhhcCCC-CCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCchHH
Q 013861 285 FQHVSIMSYTAKYASSFYGPFREALDSNP-RFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLD 363 (435)
Q Consensus 285 f~~v~IMSYSaKyASafYGPFRdA~~Sap-~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLD 363 (435)
..++.|+.....|...+..-|++++.... ..-....|..+..+....+.+... .+.|.|++...+ .....
T Consensus 135 ~~~i~~v~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~---~~~~~vi~~~~~------~~~~~ 205 (298)
T cd06268 135 VKKVAIIYDDYAYGRGLAAAFREALKKLGGEVVAEETYPPGATDFSPLIAKLKA---AGPDAVFLAGYG------GDAAL 205 (298)
T ss_pred CCEEEEEEcCCchhHHHHHHHHHHHHHcCCEEEEEeccCCCCccHHHHHHHHHh---cCCCEEEEcccc------chHHH
Confidence 44555555444444445555555543321 000112233333456666666654 478888832221 45678
Q ss_pred HHHHHHhh-CCCCeEEEEechHHHHH
Q 013861 364 VIRLLRDK-YPLPIAAYQVSGEYSMI 388 (435)
Q Consensus 364 IIr~vk~~-~~lPvaaYqVSGEYaMi 388 (435)
+++.+++. .++++.....+.+-..+
T Consensus 206 ~~~~~~~~g~~~~~~~~~~~~~~~~~ 231 (298)
T cd06268 206 FLKQAREAGLKVPIVGGDGAAAPALL 231 (298)
T ss_pred HHHHHHHcCCCCcEEecCccCCHHHH
Confidence 88888764 36888877666554443
No 393
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=34.65 E-value=1.1e+02 Score=34.34 Aligned_cols=212 Identities=18% Similarity=0.184 Sum_probs=125.2
Q ss_pred eechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEee---ecccCCCCCC
Q 013861 152 RLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTD---VALDPYSSDG 228 (435)
Q Consensus 152 r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitD---VcLc~YTshG 228 (435)
|+... +++..++.+-+.|+.++=..|- +.-|. ..-|..+.+-. -+|.+|+..|+.-+-.= ..+=-|+..
T Consensus 22 r~~t~-d~~~ia~~~d~~g~~siE~~gG---atfd~--~~rfl~edpwe-rl~~~r~~~pnt~lqmL~Rg~N~vGy~~~- 93 (596)
T PRK14042 22 RMRTE-DMLPICNKMDDVGFWAMEVWGG---ATFDA--CLRFLKEDPWS-RLRQLRQALPNTQLSMLLRGQNLLGYRNY- 93 (596)
T ss_pred CCCHH-HHHHHHHHHHhcCCCEEEeeCC---cccce--eecccCCCHHH-HHHHHHHhCCCCceEEEeccccccccccC-
Confidence 66665 5888899999999999998873 22222 44455566655 58999999998443321 112233111
Q ss_pred cceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCC---CchHHHHHHHHHHCCCCCceeechhhhhcccccccc
Q 013861 229 HDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMM---DGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPF 305 (435)
Q Consensus 229 HcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMM---DGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPF 305 (435)
-|.-++..+++| ++.|.|++=--|-+ |.-..+|+.+. +.|..-.+-++|+.
T Consensus 94 ------------~d~vv~~~v~~a---~~~Gidv~Rifd~lnd~~n~~~~i~~~k-~~G~~~~~~i~yt~---------- 147 (596)
T PRK14042 94 ------------ADDVVRAFVKLA---VNNGVDVFRVFDALNDARNLKVAIDAIK-SHKKHAQGAICYTT---------- 147 (596)
T ss_pred ------------ChHHHHHHHHHH---HHcCCCEEEEcccCcchHHHHHHHHHHH-HcCCEEEEEEEecC----------
Confidence 233444555554 57899998665544 24444666665 46776777788874
Q ss_pred hhhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhCCCCeEEEEechHH
Q 013861 306 REALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEY 385 (435)
Q Consensus 306 RdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~~lPvaaYqVSGEY 385 (435)
+| ..++....+..+++. +-|||+|.+.--....+|... -++++.+|+.+++|| .+|---.+
T Consensus 148 ------sp--------~~t~e~~~~~ak~l~---~~Gad~I~IkDtaG~l~P~~v-~~lv~alk~~~~ipi-~~H~Hnt~ 208 (596)
T PRK14042 148 ------SP--------VHTLDNFLELGKKLA---EMGCDSIAIKDMAGLLTPTVT-VELYAGLKQATGLPV-HLHSHSTS 208 (596)
T ss_pred ------CC--------CCCHHHHHHHHHHHH---HcCCCEEEeCCcccCCCHHHH-HHHHHHHHhhcCCEE-EEEeCCCC
Confidence 12 223333333333322 359999995554455566643 489999999999997 45653222
Q ss_pred ----HHHHHHHHCC--CCch---------hhHHHHHHH-HHHHhccc
Q 013861 386 ----SMIKAGGALK--MIDE---------QRVMMESLM-CLRRAGAD 416 (435)
Q Consensus 386 ----aMikaAa~~G--~ide---------~~~v~Esl~-~ikRAGAd 416 (435)
+-..+|+++| ++|- -+.-+|++. +|++-|-+
T Consensus 209 Gla~an~laAieaGad~iD~ai~glGg~tGn~~tE~lv~~L~~~g~~ 255 (596)
T PRK14042 209 GLASICHYEAVLAGCNHIDTAISSFSGGASHPPTEALVAALTDTPYD 255 (596)
T ss_pred CcHHHHHHHHHHhCCCEEEeccccccCCCCcHhHHHHHHHHHhcCCC
Confidence 2334456666 2332 234455544 45555555
No 394
>PF09505 Dimeth_Pyl: Dimethylamine methyltransferase (Dimeth_PyL); InterPro: IPR012653 This family consists of dimethylamine methyltransferases from the genus Methanosarcina. It is found in three nearly identical copies in each of Methanosarcina acetivorans, Methanosarcina barkeri, and Methanosarcina mazei. It is one of a suite of three non-homologous enzymes with a critical UAG-encoded pyrrolysine residue in these species (along with trimethylamine methyltransferase and monomethylamine methyltransferase). It demethylates dimethylamine, leaving monomethylamine, and methylates the prosthetic group of the small corrinoid protein MtbC. The methyl group is then transferred by methylcorrinoid:coenzyme M methyltransferase to coenzyme M. Note that the pyrrolysine residue is variously translated as K or X, or as a stop codon that truncates the sequence.; GO: 0008168 methyltransferase activity, 0015948 methanogenesis
Probab=34.58 E-value=23 Score=37.60 Aligned_cols=73 Identities=26% Similarity=0.317 Sum_probs=41.8
Q ss_pred CCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeec-ccCCCCCCcceeecCCCccccHHHHHHH--HHHHHHHHHcCCC
Q 013861 185 KSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVA-LDPYSSDGHDGIVREDGVIMNDETVHQL--CKQAVSQARAGAD 261 (435)
Q Consensus 185 Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVc-Lc~YTshGHcGIv~e~g~IdND~Tv~~L--ak~Avs~A~AGAD 261 (435)
-|.+|.....+-=-.-+|+..||++|||+.|=.-.+ =|-.--|| -+.-|| .||.-| -+||--.++|||+
T Consensus 210 FDttgaaGd~Df~atL~AvE~Lr~~fP~m~IE~GMAgE~vLGMHG---~leYdg-----~~LAGL~PHqQa~l~~kAGan 281 (466)
T PF09505_consen 210 FDTTGAAGDGDFYATLKAVEALRKKFPNMYIEMGMAGEFVLGMHG---ELEYDG-----VTLAGLWPHQQAPLAEKAGAN 281 (466)
T ss_pred ccccccCCChhHHHHHHHHHHHHHhCcceeEecccccceeeeccc---ceeECC-----EeeeccCcccccchHHhcCcc
Confidence 345555443332233489999999999999865544 11112222 111122 222222 2577788999999
Q ss_pred eecC
Q 013861 262 VVSP 265 (435)
Q Consensus 262 iVAP 265 (435)
+..|
T Consensus 282 vFGP 285 (466)
T PF09505_consen 282 VFGP 285 (466)
T ss_pred eecc
Confidence 9988
No 395
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=34.58 E-value=2.9e+02 Score=25.92 Aligned_cols=137 Identities=21% Similarity=0.282 Sum_probs=77.5
Q ss_pred ccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCCCceeechhhhhcccccccchhhhcCCCCCCCcc
Q 013861 240 MNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKK 319 (435)
Q Consensus 240 dND~Tv~~Lak~Avs~A~AGADiVAPSDMMDGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRdA~~Sap~fgDRk 319 (435)
+..+.++.++++|.. .|+|-|.-+ -|.+...|+.|...+ +. -+++ .+-|. |.
T Consensus 14 ~t~~~i~~~~~~a~~---~~~~av~v~---p~~v~~~~~~l~~~~-----~~-----v~~~---------~~fp~-g~-- 65 (203)
T cd00959 14 ATEEDIRKLCDEAKE---YGFAAVCVN---PCFVPLAREALKGSG-----VK-----VCTV---------IGFPL-GA-- 65 (203)
T ss_pred CCHHHHHHHHHHHHH---cCCCEEEEc---HHHHHHHHHHcCCCC-----cE-----EEEE---------EecCC-CC--
Confidence 467777778888876 567777643 477777777764322 11 1111 11121 21
Q ss_pred ccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCC--CchHHHHHHHHhhC-CCCeEEEEechHHHHHHHHHHCCC
Q 013861 320 TYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPG--LPYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKM 396 (435)
Q Consensus 320 tYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPa--l~YLDIIr~vk~~~-~lPvaaYqVSGEYaMikaAa~~G~ 396 (435)
...+.-+.|++.=++.|||-|-+.+--..+|.+ -..++-|.++++.. ++|+-+- .+.|.
T Consensus 66 ------~~~~~k~~eve~A~~~GAdevdvv~~~g~~~~~~~~~~~~ei~~v~~~~~g~~lkvI------------~e~~~ 127 (203)
T cd00959 66 ------TTTEVKVAEAREAIADGADEIDMVINIGALKSGDYEAVYEEIAAVVEACGGAPLKVI------------LETGL 127 (203)
T ss_pred ------CcHHHHHHHHHHHHHcCCCEEEEeecHHHHhCCCHHHHHHHHHHHHHhcCCCeEEEE------------EecCC
Confidence 223555566666667899988733322223332 22455566666654 4776552 22344
Q ss_pred CchhhHHHHHHHHHHHhcccEeehh--cH
Q 013861 397 IDEQRVMMESLMCLRRAGADIILTY--FA 423 (435)
Q Consensus 397 ide~~~v~Esl~~ikRAGAd~IiTY--fA 423 (435)
++.+ .+.-.-.....+|||+|=|+ |.
T Consensus 128 l~~~-~i~~a~ria~e~GaD~IKTsTG~~ 155 (203)
T cd00959 128 LTDE-EIIKACEIAIEAGADFIKTSTGFG 155 (203)
T ss_pred CCHH-HHHHHHHHHHHhCCCEEEcCCCCC
Confidence 4433 45555666778999999998 87
No 396
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=34.37 E-value=71 Score=31.03 Aligned_cols=76 Identities=14% Similarity=0.188 Sum_probs=0.0
Q ss_pred eeechhhhHHHHHHHHHHcCCCeEEE---eecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCC
Q 013861 151 YRLGWRHGLVQEVAKARDVGVNSVVL---FPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSD 227 (435)
Q Consensus 151 ~r~s~~~~l~~~v~~~~~~GI~sv~L---Fgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTsh 227 (435)
++++.+. +++.++++.+.|+..|.| +|...+ .-+.+-++.+|+.+|.+ +..-|
T Consensus 136 ~~~~~~~-~~~~~~~~~~~G~d~i~l~DT~G~~~P--------------~~v~~lv~~l~~~~~~~---------~l~~H 191 (263)
T cd07943 136 HMASPEE-LAEQAKLMESYGADCVYVTDSAGAMLP--------------DDVRERVRALREALDPT---------PVGFH 191 (263)
T ss_pred cCCCHHH-HHHHHHHHHHcCCCEEEEcCCCCCcCH--------------HHHHHHHHHHHHhCCCc---------eEEEE
Q ss_pred CcceeecCCCccccHHHHHHHHHHHHHHHHcCCCee
Q 013861 228 GHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVV 263 (435)
Q Consensus 228 GHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiV 263 (435)
+|+ |...=..-++.-.+||||+|
T Consensus 192 ~Hn-------------~~GlA~AN~laAi~aGa~~v 214 (263)
T cd07943 192 GHN-------------NLGLAVANSLAAVEAGATRI 214 (263)
T ss_pred ecC-------------CcchHHHHHHHHHHhCCCEE
No 397
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=34.30 E-value=84 Score=31.96 Aligned_cols=71 Identities=27% Similarity=0.316 Sum_probs=51.5
Q ss_pred HHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHH
Q 013861 329 REALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLM 408 (435)
Q Consensus 329 ~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G~ide~~~v~Esl~ 408 (435)
.+-..-+.+=-+||||=|+|--+...-.=-.+-+|+|.++.++..+|+.. -|-|.. +|-..
T Consensus 30 GDpVelA~~Y~e~GADElvFlDItAs~~gr~~~~~vv~r~A~~vfiPltV---------------GGGI~s----~eD~~ 90 (256)
T COG0107 30 GDPVELAKRYNEEGADELVFLDITASSEGRETMLDVVERVAEQVFIPLTV---------------GGGIRS----VEDAR 90 (256)
T ss_pred CChHHHHHHHHHcCCCeEEEEecccccccchhHHHHHHHHHhhceeeeEe---------------cCCcCC----HHHHH
Confidence 33344555666899999997665555555567799999999999999874 344432 56667
Q ss_pred HHHHhcccEe
Q 013861 409 CLRRAGADII 418 (435)
Q Consensus 409 ~ikRAGAd~I 418 (435)
.+.|||||=|
T Consensus 91 ~ll~aGADKV 100 (256)
T COG0107 91 KLLRAGADKV 100 (256)
T ss_pred HHHHcCCCee
Confidence 8999999976
No 398
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=34.26 E-value=1.4e+02 Score=30.09 Aligned_cols=102 Identities=12% Similarity=0.078 Sum_probs=53.3
Q ss_pred CCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCC-CCCcccCcCcCCCCCH---HHHHHHHHHHCCCeEEEeeecccC
Q 013861 148 PGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDA-LKSPTGDEAYNDNGLV---PRTIWLLKDRYPDLVIYTDVALDP 223 (435)
Q Consensus 148 PGv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~-~Kd~~Gs~A~~~~g~v---~raIr~iK~~~Pdl~IitDVcLc~ 223 (435)
|++.-| .. -..+.++.+++.|++.|.+|.-+++. .+...+ .+.+..+ .++++..|+... ...+++
T Consensus 67 ~~v~~~-~r-~~~~die~A~~~g~~~v~i~~s~S~~~~~~~~~---~t~~e~l~~~~~~v~~a~~~g~----~v~~~~-- 135 (279)
T cd07947 67 PEVTGW-IR-ANKEDLKLVKEMGLKETGILMSVSDYHIFKKLK---MTREEAMEKYLEIVEEALDHGI----KPRCHL-- 135 (279)
T ss_pred CEEEEE-ec-CCHHHHHHHHHcCcCEEEEEEcCCHHHHHHHhC---cCHHHHHHHHHHHHHHHHHCCC----eEEEEE--
Confidence 566555 32 25788899999999999998655432 122222 1122222 234444444432 233333
Q ss_pred CCCCCcceeecCCCcccc-HHHHHHHHHHHHHHHHcCCC-eecCCCCCC
Q 013861 224 YSSDGHDGIVREDGVIMN-DETVHQLCKQAVSQARAGAD-VVSPSDMMD 270 (435)
Q Consensus 224 YTshGHcGIv~e~g~IdN-D~Tv~~Lak~Avs~A~AGAD-iVAPSDMMD 270 (435)
.|.++ -+- |..++.+.+.+-.-.++||| .|.-.|+.=
T Consensus 136 ------ed~~r----~d~~~~v~~~~~~~~~~~~~~G~~~~i~l~DTvG 174 (279)
T cd07947 136 ------EDITR----ADIYGFVLPFVNKLMKLSKESGIPVKIRLCDTLG 174 (279)
T ss_pred ------EcccC----CCcccchHHHHHHHHHHHHHCCCCEEEEeccCCC
Confidence 11222 122 33333444433334579999 688887764
No 399
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=34.22 E-value=1.7e+02 Score=28.62 Aligned_cols=63 Identities=19% Similarity=0.313 Sum_probs=39.7
Q ss_pred ccccEEecccCCCcccCC--------CchHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHH
Q 013861 341 EGADILLFSVLGSQVKPG--------LPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRR 412 (435)
Q Consensus 341 EGADilM~~~~~~~VKPa--------l~YLDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G~ide~~~v~Esl~~ikR 412 (435)
.|+|+|=+...-.+.+-. -...+|++.+|+.+++||.+= +|.. .+ -+.|....+..
T Consensus 114 ~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~vK-l~~~--------------~~-~~~~~a~~~~~ 177 (296)
T cd04740 114 AGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDVPVIVK-LTPN--------------VT-DIVEIARAAEE 177 (296)
T ss_pred cCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccCCCEEEE-eCCC--------------ch-hHHHHHHHHHH
Confidence 489999644221111111 234689999999999999853 5532 12 24566667888
Q ss_pred hcccEee
Q 013861 413 AGADIIL 419 (435)
Q Consensus 413 AGAd~Ii 419 (435)
+|||.|.
T Consensus 178 ~G~d~i~ 184 (296)
T cd04740 178 AGADGLT 184 (296)
T ss_pred cCCCEEE
Confidence 9999763
No 400
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=34.20 E-value=5e+02 Score=26.91 Aligned_cols=126 Identities=17% Similarity=0.200 Sum_probs=69.1
Q ss_pred hhhhHHHHHHHHHHcCCCeEEEeecCCCCCC--CcccC-cCcCCCCCHHHHHHHH----HHHCCCeEEEe---eecccCC
Q 013861 155 WRHGLVQEVAKARDVGVNSVVLFPKVPDALK--SPTGD-EAYNDNGLVPRTIWLL----KDRYPDLVIYT---DVALDPY 224 (435)
Q Consensus 155 ~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~K--d~~Gs-~A~~~~g~v~raIr~i----K~~~Pdl~Iit---DVcLc~Y 224 (435)
|.+-+.+.++.++++|...|.|=-+ |... .+.|+ .....++++ +.|+.| |+++|+++||. +--+ ++
T Consensus 145 W~~il~~rl~~l~~kGfDGvfLD~l--Dsy~~~~~~~~~~~~~~~~m~-~~i~~Ia~~ar~~~P~~~II~NnG~eil-~~ 220 (315)
T TIGR01370 145 WKAIAFSYLDRVIAQGFDGVYLDLI--DAFEYWAENGDNRPGAAAEMI-AFVCEIAAYARAQNPQFVIIPQNGEELL-RD 220 (315)
T ss_pred HHHHHHHHHHHHHHcCCCeEeeccc--hhhhhhcccCCcchhhHHHHH-HHHHHHHHHHHHHCCCEEEEecCchhhh-hc
Confidence 3334677789999999999877321 2211 11111 011112222 355555 99999998872 2222 12
Q ss_pred C---CCC-cceeecCC------CccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCc--------hHHHHHHHHHHCCC
Q 013861 225 S---SDG-HDGIVRED------GVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDG--------RVGAIRAALDAEGF 285 (435)
Q Consensus 225 T---shG-HcGIv~e~------g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMMDG--------rVgAIR~aLD~~Gf 285 (435)
. -++ =+||.-|+ +.+.. +-.+.+.++.-..-++|-.|++-.=.=+| ++..+.+...++||
T Consensus 221 ~~g~~~~~idgV~~Eslf~~~~~~~~e-~dr~~~l~~L~~~~~~G~~Vl~IDY~~~~~~~~~n~~~~~~~~~~~~~~Gf 298 (315)
T TIGR01370 221 DHGGLAATVSGWAVEELFYYAANRPTE-AERQRRLLALYRLWQQGKFVLTVDYVDDGTKTNENPARMKDAAEKARAAGL 298 (315)
T ss_pred cccchhhhceEEEecceEEcCCCCCCH-HHHHHHHHHHHHHHHCCCcEEEEEecCCcccchhhHHHHHHHHHHHHHcCC
Confidence 1 111 24554432 34433 33344445555555669988775544443 66788888889998
No 401
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=34.18 E-value=60 Score=32.19 Aligned_cols=70 Identities=20% Similarity=0.171 Sum_probs=49.4
Q ss_pred CeecCCCCCCc--hHHHHHHHHHHCCCCCceeechhhhhcccccccchhhhcCCCCCCCccccCCCCCCHHHHHHHHHhc
Q 013861 261 DVVSPSDMMDG--RVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQAD 338 (435)
Q Consensus 261 DiVAPSDMMDG--rVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D 338 (435)
.+||||.-.+. ++...++.|.+.|| +|.++...-+-. ..|.=++..+.+-|.++..|
T Consensus 2 ~iiapSs~~~~~~~~~~~~~~L~~~G~-~v~~~~~~~~~~--------------------~~~a~s~~~Ra~dL~~a~~d 60 (282)
T cd07025 2 GIVAPSSPIDEEERLERAIARLESLGL-EVVVGPHVLARD--------------------GYLAGTDEERAADLNAAFAD 60 (282)
T ss_pred EEEeCCCCCCcHHHHHHHHHHHHhCCC-EEEeccchhhhc--------------------CccCCCHHHHHHHHHHHhhC
Confidence 48999998877 78888999999998 666655433211 12344556788889999996
Q ss_pred ccccccEEecccCCC
Q 013861 339 ESEGADILLFSVLGS 353 (435)
Q Consensus 339 ~~EGADilM~~~~~~ 353 (435)
-+ .|+||+..=|.
T Consensus 61 ~~--i~aI~~~rGG~ 73 (282)
T cd07025 61 PE--IKAIWCARGGY 73 (282)
T ss_pred CC--CCEEEEcCCcC
Confidence 54 89999655554
No 402
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=34.13 E-value=1.1e+02 Score=30.62 Aligned_cols=39 Identities=18% Similarity=0.278 Sum_probs=26.9
Q ss_pred cccccEEeccc-CCCcccCCCchHHHHHHHHhhCCCCeEE
Q 013861 340 SEGADILLFSV-LGSQVKPGLPYLDVIRLLRDKYPLPIAA 378 (435)
Q Consensus 340 ~EGADilM~~~-~~~~VKPal~YLDIIr~vk~~~~lPvaa 378 (435)
+-|+|.|..+. ...|--++.+.+|.++++|+..++||.+
T Consensus 158 ~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~ipvi~ 197 (319)
T TIGR00737 158 DAGAQAVTLHGRTRAQGYSGEANWDIIARVKQAVRIPVIG 197 (319)
T ss_pred HhCCCEEEEEcccccccCCCchhHHHHHHHHHcCCCcEEE
Confidence 45899997321 1112223346799999999999999975
No 403
>TIGR02198 rfaE_dom_I rfaE bifunctional protein, domain I. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in E. coli, and separate proteins in some other genome. The longer, N-terminal domain I (this family) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (TIGR02199) adds ADP to yield ADP-D-glycero-D-manno-heptose.
Probab=33.94 E-value=2.7e+02 Score=26.80 Aligned_cols=75 Identities=23% Similarity=0.256 Sum_probs=45.6
Q ss_pred HCCCeEEEeeecccCCCC----C----CcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHH-HHHHH
Q 013861 209 RYPDLVIYTDVALDPYSS----D----GHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVG-AIRAA 279 (435)
Q Consensus 209 ~~Pdl~IitDVcLc~YTs----h----GHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMMDGrVg-AIR~a 279 (435)
+-|+++++..+|+|.|-. + .+-..... ..+ ..+.-=-+.+|+..++-|.++..=|-.-+...+ .|++.
T Consensus 6 ~~~~il~iG~~~iD~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~GGa~NvA~~l~~lg~~v~~i~~vG~D~~g~~i~~~ 82 (315)
T TIGR02198 6 KGAKVLVVGDVMLDRYWYGKVSRISPEAPVPVVKV-ERE--EDRLGGAANVARNIASLGARVFLVGVVGDDEAGKRLEAL 82 (315)
T ss_pred CCCcEEEECceeEeeeeeecccccCCCCCCceEEE-EEE--EecCcHHHHHHHHHHhcCCceEEEEEEecchhHHHHHHH
Confidence 358999999999999832 1 11111000 000 000111146788888999987665555455444 89999
Q ss_pred HHHCCCC
Q 013861 280 LDAEGFQ 286 (435)
Q Consensus 280 LD~~Gf~ 286 (435)
|.++|..
T Consensus 83 l~~~gI~ 89 (315)
T TIGR02198 83 LAEEGID 89 (315)
T ss_pred HHHCCCC
Confidence 9999974
No 404
>PRK05481 lipoyl synthase; Provisional
Probab=33.93 E-value=88 Score=31.29 Aligned_cols=77 Identities=13% Similarity=0.082 Sum_probs=47.9
Q ss_pred ceeeEEEeeCC-CC---cccCCCCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHH
Q 013861 129 FVYPLFIHEGE-ED---TPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIW 204 (435)
Q Consensus 129 LI~PlFV~eg~-~~---~~I~sMPGv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr 204 (435)
-..-|.+++|= .. =.|+.-.| ..++.+ +++++++++.+.|++-|.|-|..-++..| .| ..-+.+.++
T Consensus 53 ~~~fi~is~GC~~~C~FC~i~~~r~-~s~~~e-eI~~ea~~l~~~G~kEI~L~gg~~~d~~~-~~------~~~l~~Ll~ 123 (289)
T PRK05481 53 TATFMILGDICTRRCPFCDVATGRP-LPLDPD-EPERVAEAVARMGLKYVVITSVDRDDLPD-GG------AQHFAETIR 123 (289)
T ss_pred eEEEEEecccccCCCCCceeCCCCC-CCCCHH-HHHHHHHHHHHCCCCEEEEEEeeCCCccc-cc------HHHHHHHHH
Confidence 34445566663 21 12333334 236775 69999999999999999998752111111 01 014678899
Q ss_pred HHHHHCCCeE
Q 013861 205 LLKDRYPDLV 214 (435)
Q Consensus 205 ~iK~~~Pdl~ 214 (435)
.||+.+|++-
T Consensus 124 ~I~~~~p~ir 133 (289)
T PRK05481 124 AIRELNPGTT 133 (289)
T ss_pred HHHhhCCCcE
Confidence 9999999764
No 405
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=33.85 E-value=2.1e+02 Score=32.38 Aligned_cols=94 Identities=17% Similarity=0.233 Sum_probs=62.1
Q ss_pred HHHHHHHHHcCCCeEEEeec-----------CCCCCCCcccCcCcCCCCCHHHHHHHHHHHCC-CeEEEeeecccCCCCC
Q 013861 160 VQEVAKARDVGVNSVVLFPK-----------VPDALKSPTGDEAYNDNGLVPRTIWLLKDRYP-DLVIYTDVALDPYSSD 227 (435)
Q Consensus 160 ~~~v~~~~~~GI~sv~LFgv-----------i~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~P-dl~IitDVcLc~YTsh 227 (435)
.+-++.+.+.|...|-|-+- +.+.-+|+.|-+--|---++...++.||+.+| |+.|..=+....|..
T Consensus 554 ~~aA~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~~~~~~~v~~ri~~~~~~~- 632 (765)
T PRK08255 554 VAAARRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVWPAEKPMSVRISAHDWVE- 632 (765)
T ss_pred HHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHHHhcCCCCeeEEEEccccccC-
Confidence 34445678899999987432 12346788887655666777899999999995 677776666555421
Q ss_pred CcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCC
Q 013861 228 GHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSD 267 (435)
Q Consensus 228 GHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSD 267 (435)
+| .+-++++ +.|-.+.++|+|+|.-|.
T Consensus 633 --------~g-~~~~~~~----~~~~~l~~~g~d~i~vs~ 659 (765)
T PRK08255 633 --------GG-NTPDDAV----EIARAFKAAGADLIDVSS 659 (765)
T ss_pred --------CC-CCHHHHH----HHHHHHHhcCCcEEEeCC
Confidence 22 2334444 334445788999998774
No 406
>PRK06256 biotin synthase; Validated
Probab=33.61 E-value=1.6e+02 Score=29.39 Aligned_cols=55 Identities=20% Similarity=0.373 Sum_probs=34.9
Q ss_pred cee-echhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeE
Q 013861 150 CYR-LGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLV 214 (435)
Q Consensus 150 v~r-~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~ 214 (435)
.|+ ++.+ .++++++++.+.|++.+.+..-- ..+... +---+.+.++.||+. +++-
T Consensus 87 ~~~~~s~e-eI~~~~~~~~~~g~~~~~l~~~g----~~p~~~----~~~~~~e~i~~i~~~-~~i~ 142 (336)
T PRK06256 87 RYAWLDIE-ELIEAAKEAIEEGAGTFCIVASG----RGPSGK----EVDQVVEAVKAIKEE-TDLE 142 (336)
T ss_pred eecCCCHH-HHHHHHHHHHHCCCCEEEEEecC----CCCCch----HHHHHHHHHHHHHhc-CCCc
Confidence 355 5775 69999999999999888775310 111000 001366789999887 5553
No 407
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=33.58 E-value=3.7e+02 Score=26.14 Aligned_cols=97 Identities=24% Similarity=0.311 Sum_probs=55.4
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCC
Q 013861 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDG 237 (435)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTshGHcGIv~e~g 237 (435)
.-+.|++++++.|...|-+-..+. ..|+. ....+.+-|+.|++...++.+.. |+ |.|
T Consensus 71 ~K~~E~~~Av~~GAdEiDvv~n~g-~l~~g-------~~~~v~~ei~~i~~~~~g~~lKv--------------Il-E~~ 127 (211)
T TIGR00126 71 VKLYETKEAIKYGADEVDMVINIG-ALKDG-------NEEVVYDDIRAVVEACAGVLLKV--------------II-ETG 127 (211)
T ss_pred HHHHHHHHHHHcCCCEEEeecchH-hhhCC-------cHHHHHHHHHHHHHHcCCCeEEE--------------EE-ecC
Confidence 357889999999999987733322 23321 11345556777776543322211 33 456
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC------chHHHHHHHHH
Q 013861 238 VIMNDETVHQLCKQAVSQARAGADVVSPSDMMD------GRVGAIRAALD 281 (435)
Q Consensus 238 ~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMMD------GrVgAIR~aLD 281 (435)
.+. |+-+. +.+-.-.++|||+|=-|-=-- +.|..+|+.+.
T Consensus 128 ~L~-~~ei~---~a~~ia~eaGADfvKTsTGf~~~gat~~dv~~m~~~v~ 173 (211)
T TIGR00126 128 LLT-DEEIR---KACEICIDAGADFVKTSTGFGAGGATVEDVRLMRNTVG 173 (211)
T ss_pred CCC-HHHHH---HHHHHHHHhCCCEEEeCCCCCCCCCCHHHHHHHHHHhc
Confidence 644 33344 444455789999997763222 45556666653
No 408
>cd08563 GDPD_TtGDE_like Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermoanaerobacter tengcongensis glycerophosphodiester phosphodiesterase (TtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Despite the fact that most of GDPD family members exist as the monomer, TtGDE can function as a dimeric unit. Its catalytic mechanism is based on the general base-acid catalysis, which is similar to that of phosphoinositide-specific phospholipases C (PI-PLCs, EC 3.1.4.11). A divalent metal cation is required for the enzyme activity of TtGDE.
Probab=33.48 E-value=3.7e+02 Score=25.19 Aligned_cols=112 Identities=19% Similarity=0.287 Sum_probs=61.3
Q ss_pred CchHHHHHHHHHHCCC-CCceeechhhhhcccccccchhhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEec
Q 013861 270 DGRVGAIRAALDAEGF-QHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLF 348 (435)
Q Consensus 270 DGrVgAIR~aLD~~Gf-~~v~IMSYSaKyASafYGPFRdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~ 348 (435)
.+-+..+-+.|.+.|. .++-+.||..+....+ | .-.|.+ +..|-... ...++... .. .-+++.+.
T Consensus 117 ~~~~~~l~~~l~~~~~~~~v~~~Sf~~~~l~~~----~---~~~p~~--~~~~l~~~-~~~~~~~~-~~--~~~~~~v~- 182 (230)
T cd08563 117 PGIEKKVLELVKEYNLEDRVIFSSFNHESLKRL----K---KLDPKI--KLALLYET-GLQDPKDY-AK--KIGADSLH- 182 (230)
T ss_pred hhHHHHHHHHHHHcCCCCCEEEEcCCHHHHHHH----H---HHCCCC--cEEEEecC-cccCHHHH-HH--HhCCEEEc-
Confidence 3456677888888876 6688888876543322 2 222332 12221111 11111111 11 12455555
Q ss_pred ccCCCcccCCCchHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEeehhc
Q 013861 349 SVLGSQVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTYF 422 (435)
Q Consensus 349 ~~~~~~VKPal~YLDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G~ide~~~v~Esl~~ikRAGAd~IiTYf 422 (435)
+.-....-++|+.+++. +++|.+|-| |.. |.+.-+.+.|+|.|+|=+
T Consensus 183 ------~~~~~~~~~~i~~~~~~-g~~v~~Wtv----------------n~~----~~~~~~~~~GVdgi~TD~ 229 (230)
T cd08563 183 ------PDFKLLTEEVVEELKKR-GIPVRLWTV----------------NEE----EDMKRLKDLGVDGIITNY 229 (230)
T ss_pred ------cCchhcCHHHHHHHHHC-CCEEEEEec----------------CCH----HHHHHHHHCCCCEEeCCC
Confidence 33233334677887775 899999977 322 445566677999999843
No 409
>PRK11253 ldcA L,D-carboxypeptidase A; Provisional
Probab=33.47 E-value=88 Score=31.70 Aligned_cols=80 Identities=14% Similarity=0.049 Sum_probs=50.5
Q ss_pred CeecCCC-C-CCchHHHHHHHHHHCCCCCceeechhhhhcccccccchhhhcCCCCCCCccccCCCCCCHHHHHHHHHhc
Q 013861 261 DVVSPSD-M-MDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQAD 338 (435)
Q Consensus 261 DiVAPSD-M-MDGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D 338 (435)
.+||||. + ..-++...++.|.+.|| +|.++....+- ...+.-++..+-+.|.++..+
T Consensus 5 ~viAPSs~~~~~~~~~~~i~~L~~~G~-~v~~~~~~~~~--------------------~~~~agtd~~Ra~dL~~a~a~ 63 (305)
T PRK11253 5 HLIAPSGYPIDQAAALRGVQRLTDAGH-QVENVEVIARR--------------------YQRFAGTDGERLADLNSLADL 63 (305)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHhCCC-EEeeccccccc--------------------cCccCCCHHHHHHHHHHHHhc
Confidence 5899997 5 44578888888999999 46555443210 001234455688889998866
Q ss_pred ccccccEEecccCCCcccCCCchH
Q 013861 339 ESEGADILLFSVLGSQVKPGLPYL 362 (435)
Q Consensus 339 ~~EGADilM~~~~~~~VKPal~YL 362 (435)
-+. .|+|++.-=|.--==-++||
T Consensus 64 ~dp-i~aI~~~rGGyg~~rlLp~L 86 (305)
T PRK11253 64 TTP-NTIVLAVRGGYGASRLLAGI 86 (305)
T ss_pred CCC-ccEEEEecccCCHhHhhhhC
Confidence 667 99998655554322334444
No 410
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=33.37 E-value=89 Score=30.12 Aligned_cols=39 Identities=23% Similarity=0.348 Sum_probs=29.5
Q ss_pred CCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCch-----HHHHHHHHhh
Q 013861 323 MNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPY-----LDVIRLLRDK 371 (435)
Q Consensus 323 mdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~Y-----LDIIr~vk~~ 371 (435)
+|+.|..|+++.+.. -|.+++. +|-+... +++|+.+|+.
T Consensus 9 lD~~~~~~~l~~~~~---~~~~~~~-------ikvg~~~f~~~G~~~i~~l~~~ 52 (230)
T PRK00230 9 LDFPSKEEALAFLDQ---LDPAVLF-------VKVGMELFTAGGPQFVRELKQR 52 (230)
T ss_pred cCCCCHHHHHHHHHh---cCCcccE-------EEEcHHHHHhcCHHHHHHHHhc
Confidence 688899999987753 4667777 7766543 7889999986
No 411
>PRK10200 putative racemase; Provisional
Probab=33.26 E-value=1.5e+02 Score=28.72 Aligned_cols=56 Identities=14% Similarity=0.033 Sum_probs=42.0
Q ss_pred CCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEee------hhcHHHHHHH
Q 013861 374 LPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIIL------TYFALQAARC 429 (435)
Q Consensus 374 lPvaaYqVSGEYaMikaAa~~G~ide~~~v~Esl~~ikRAGAd~Ii------TYfA~~~a~~ 429 (435)
.|...++..---....+-...+|-+....+.|.+..+.++|||+|+ +||..++.++
T Consensus 35 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~l~~~~~~L~~~g~~~iviaCNTah~~~~~l~~~ 96 (230)
T PRK10200 35 SAQLLLHSVDFHEIEECQRRGEWDKTGDILAEAALGLQRAGAEGIVLCTNTMHKVADAIESR 96 (230)
T ss_pred CCeEEEeCCChHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCEEEECCchHHHHHHHHHHh
Confidence 6777777655555544444578888889999999999999999997 5666655554
No 412
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=33.13 E-value=1.6e+02 Score=30.03 Aligned_cols=82 Identities=26% Similarity=0.315 Sum_probs=55.8
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHH-----HHHHHHHHHCCCeEEEeeecccCCCCCCccee
Q 013861 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVP-----RTIWLLKDRYPDLVIYTDVALDPYSSDGHDGI 232 (435)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~-----raIr~iK~~~Pdl~IitDVcLc~YTshGHcGI 232 (435)
+|++.+.++.+.|..+++|=|- .+++|-|+ ..++.+|++. .|.|.+ |-|+
T Consensus 43 ~l~k~~~el~kkGy~g~llSGG-------------m~srg~VPl~kf~d~lK~lke~~-~l~ina-----------HvGf 97 (275)
T COG1856 43 SLLKRCMELEKKGYEGCLLSGG-------------MDSRGKVPLWKFKDELKALKERT-GLLINA-----------HVGF 97 (275)
T ss_pred HHHHHHHHHHhcCceeEEEeCC-------------cCCCCCccHHHHHHHHHHHHHhh-CeEEEE-----------Eeee
Confidence 5899999999999999999774 23345444 6788888874 344443 7787
Q ss_pred ecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHH
Q 013861 233 VREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAAL 280 (435)
Q Consensus 233 v~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMMDGrVgAIR~aL 280 (435)
++| +- +--++++|+|+|+-.=.-|. .+||+.+
T Consensus 98 vdE-------~~-------~eklk~~~vdvvsLDfvgDn--~vIk~vy 129 (275)
T COG1856 98 VDE-------SD-------LEKLKEELVDVVSLDFVGDN--DVIKRVY 129 (275)
T ss_pred ccH-------HH-------HHHHHHhcCcEEEEeecCCh--HHHHHHH
Confidence 853 11 22467899999985433444 4566665
No 413
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=32.97 E-value=48 Score=33.83 Aligned_cols=44 Identities=25% Similarity=0.316 Sum_probs=27.0
Q ss_pred HHHHHHHcCCCeecCCC--------------CCC---chHHHHHHHHHHCCCCCceeechhh
Q 013861 251 QAVSQARAGADVVSPSD--------------MMD---GRVGAIRAALDAEGFQHVSIMSYTA 295 (435)
Q Consensus 251 ~Avs~A~AGADiVAPSD--------------MMD---GrVgAIR~aLD~~Gf~~v~IMSYSa 295 (435)
||...++|||||+.+-= -+| -+|.+|.++-.+.+ .++.+|.|..
T Consensus 162 ~A~~M~~AGaDiiv~H~GlT~gG~~Ga~~~~sl~~a~~~~~~i~~aa~~v~-~dii~l~hGG 222 (268)
T PF09370_consen 162 QARAMAEAGADIIVAHMGLTTGGSIGAKTALSLEEAAERIQEIFDAARAVN-PDIIVLCHGG 222 (268)
T ss_dssp HHHHHHHHT-SEEEEE-SS----------S--HHHHHHHHHHHHHHHHCC--TT-EEEEECT
T ss_pred HHHHHHHcCCCEEEecCCccCCCCcCccccCCHHHHHHHHHHHHHHHHHhC-CCeEEEEeCC
Confidence 89999999999998631 112 24455555555555 6788887754
No 414
>PRK12346 transaldolase A; Provisional
Probab=32.90 E-value=59 Score=33.63 Aligned_cols=19 Identities=37% Similarity=0.317 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHcCCCeecC
Q 013861 247 QLCKQAVSQARAGADVVSP 265 (435)
Q Consensus 247 ~Lak~Avs~A~AGADiVAP 265 (435)
.-..||+.-|+|||+.|+|
T Consensus 158 FS~~Qa~~aa~AGa~~ISP 176 (316)
T PRK12346 158 FSFAQARACAEAGVFLISP 176 (316)
T ss_pred cCHHHHHHHHHcCCCEEEe
Confidence 3467999999999999999
No 415
>cd06333 PBP1_ABC-type_HAAT_like Type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. This subgroup includes the type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. Members of this subgroup are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=32.89 E-value=1.8e+02 Score=27.60 Aligned_cols=50 Identities=20% Similarity=0.232 Sum_probs=28.3
Q ss_pred cccccEEecccCCCcccC-CCchHHHHHHHHhh-CCCCeEEEEechHHHHHHHH--HHCCC
Q 013861 340 SEGADILLFSVLGSQVKP-GLPYLDVIRLLRDK-YPLPIAAYQVSGEYSMIKAG--GALKM 396 (435)
Q Consensus 340 ~EGADilM~~~~~~~VKP-al~YLDIIr~vk~~-~~lPvaaYqVSGEYaMikaA--a~~G~ 396 (435)
++++|.|+ +=- ...-.-+++.+++. .+.|+..-.....=.+++.+ +..|+
T Consensus 186 ~~~pdaIi-------~~~~~~~~~~~~~~l~~~g~~~p~~~~~~~~~~~~~~~~g~~~~g~ 239 (312)
T cd06333 186 AARPDAVL-------IWGSGTPAALPAKNLRERGYKGPIYQTHGVASPDFLRLAGKAAEGA 239 (312)
T ss_pred hCCCCEEE-------EecCCcHHHHHHHHHHHcCCCCCEEeecCcCcHHHHHHhhHhhcCc
Confidence 46899998 432 11235588888874 46777654333333455552 34565
No 416
>TIGR02709 branched_ptb branched-chain phosphotransacylase. This model distinguishes branched-chain phosphotransacylases like that of Enterococcus faecalis from closely related subfamilies of phosphate butyryltransferase (EC 2.3.1.19) (TIGR02706) and phosphate acetyltransferase (EC 2.3.1.8) (TIGR00651). Members of this family and of TIGR02706 show considerable crossreactivity, and the occurrence of a member of either family near an apparent leucine dehydrogenase will suggest activity on branched chain-acyl-CoA compounds.
Probab=32.85 E-value=3.1e+02 Score=27.94 Aligned_cols=180 Identities=15% Similarity=0.151 Sum_probs=99.0
Q ss_pred hhhHHHHHHHHHHcC--CCeEEEeecCCCCCCCcccC-c---CcCC--------------------CCCHHHHHHHHH--
Q 013861 156 RHGLVQEVAKARDVG--VNSVVLFPKVPDALKSPTGD-E---AYND--------------------NGLVPRTIWLLK-- 207 (435)
Q Consensus 156 ~~~l~~~v~~~~~~G--I~sv~LFgvi~~~~Kd~~Gs-~---A~~~--------------------~g~v~raIr~iK-- 207 (435)
|...++-|.++.+.| +-..+|||. +...|.... + +-++ .|.+..+ ..+|
T Consensus 10 d~~~l~av~~a~~~g~~~~~~ilvg~--~~~~~~~~~~~ii~~~~~~~aa~~av~lv~~G~aD~lmkG~i~T~-~~lrav 86 (271)
T TIGR02709 10 QPEILQLVKKALKEAEQPLQFIVFDT--NENLDTENLWKYVHCSDEAAVAQEAVSLVATGQAQILLKGIIQTH-TLLKEM 86 (271)
T ss_pred CHHHHHHHHHHHHcCCceeEEEEEcC--cccCCcccCeeEEECCChHHHHHHHHHHHHCCCCCEEEcCCcCcH-HHHHHH
Confidence 445789999999999 567788885 333332211 1 1111 1233222 2222
Q ss_pred ----HHCCCeEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHC
Q 013861 208 ----DRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAE 283 (435)
Q Consensus 208 ----~~~Pdl~IitDVcLc~YTshGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMMDGrVgAIR~aLD~~ 283 (435)
...|.--+++-+++-+.-. |--++-.|.-|+-+.|++++++++..-++ ..| .-
T Consensus 87 l~~~~gl~~~~~~S~v~i~~~p~--~~~l~~tD~~vn~~P~~eqk~~I~~nA~~-----------------~ar----~l 143 (271)
T TIGR02709 87 LKSEHQLKNKPILSHVAMVELPA--GKTFLLTDCAMNIAPTQATLIEIVENAKE-----------------VAQ----KL 143 (271)
T ss_pred HHHHcCCCCCCeeEEEEEEEecC--CCEEEEECCCccCCcCHHHHHHHHHHHHH-----------------HHH----Hc
Confidence 1124444667776554433 22333346788889999999999776554 223 33
Q ss_pred CC--CCceeechhhhhcccccccc-hhhh------cCCCCCCCccccCCCCCCHHHHHHHH--HhcccccccEEecccCC
Q 013861 284 GF--QHVSIMSYTAKYASSFYGPF-REAL------DSNPRFGDKKTYQMNPANYREALVEA--QADESEGADILLFSVLG 352 (435)
Q Consensus 284 Gf--~~v~IMSYSaKyASafYGPF-RdA~------~Sap~fgDRktYQmdp~N~~EAlre~--~~D~~EGADilM~~~~~ 352 (435)
|+ .+|+++|||.++... +|- .++. +..|.+-----.|+|-+=..|+.+.- ...+...||+|+
T Consensus 144 Gie~PkVAlLS~se~~s~~--~~st~~a~~l~~~~~~~~~~~vdGpl~~D~Al~~e~a~~K~~~s~vaG~AniLI----- 216 (271)
T TIGR02709 144 GLHHPKIALLSAAENFNPK--MPSSVLAKEVTAHFNDQQEATVFGPLSLDLATSEEAVAHKRYSGPIMGDADILV----- 216 (271)
T ss_pred CCCCCeEEEEecccCCCCC--CchHHHHHHHHHHHHhCCCCEEEecCchhhhcCHHHHHhhCCCCCCCCcCCEEE-----
Confidence 87 689999999887443 232 2221 11132211225677776555544422 223557899988
Q ss_pred CcccCCCchHHHHHHHHhh
Q 013861 353 SQVKPGLPYLDVIRLLRDK 371 (435)
Q Consensus 353 ~~VKPal~YLDIIr~vk~~ 371 (435)
=|-+--=.|+.++-+.
T Consensus 217 ---~PnleaGNi~yK~l~~ 232 (271)
T TIGR02709 217 ---VPTIDVGNCLYKSLTL 232 (271)
T ss_pred ---cCChHHHHHHHHHHHH
Confidence 3555555566654443
No 417
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=32.80 E-value=1.1e+02 Score=31.90 Aligned_cols=98 Identities=17% Similarity=0.258 Sum_probs=59.8
Q ss_pred hHHHHHHHHHHcCCCeE---EEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeec
Q 013861 158 GLVQEVAKARDVGVNSV---VLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVR 234 (435)
Q Consensus 158 ~l~~~v~~~~~~GI~sv---~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTshGHcGIv~ 234 (435)
.+.+.++.+.+.|++.| ++|| +|....+ -+.+.++.+.+.-|+-+-+.-..+-|-|.-.+. +
T Consensus 152 ~~~~ai~~l~~~G~~~v~~dlI~G-lPgqt~e-----------~~~~tl~~~~~l~p~~is~y~L~~~pgT~l~~~--~- 216 (400)
T PRK07379 152 DIFAAVDLIHQAGIENFSLDLISG-LPHQTLE-----------DWQASLEAAIALNPTHLSCYDLVLEPGTAFGKQ--Y- 216 (400)
T ss_pred HHHHHHHHHHHcCCCeEEEEeecC-CCCCCHH-----------HHHHHHHHHHcCCCCEEEEecceecCCchhHHH--h-
Confidence 46777888899999854 6788 4742111 255688888777787665555555555543321 1
Q ss_pred CCCcc--ccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCCCceeechh
Q 013861 235 EDGVI--MNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYT 294 (435)
Q Consensus 235 e~g~I--dND~Tv~~Lak~Avs~A~AGADiVAPSDMMDGrVgAIR~aLD~~Gf~~v~IMSYS 294 (435)
..|.. .+++. .--....+++.|.++||.+..|-.||
T Consensus 217 ~~g~~~~~~~~~------------------------~~~~~~~~~~~L~~~Gy~~yeisnfa 254 (400)
T PRK07379 217 QPGKAPLPSDET------------------------TAAMYRLAQEILTQAGYEHYEISNYA 254 (400)
T ss_pred hcCCCCCCCHHH------------------------HHHHHHHHHHHHHHcCCceeeeeheE
Confidence 11211 11111 11123457788999999999999887
No 418
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=32.78 E-value=45 Score=33.78 Aligned_cols=90 Identities=22% Similarity=0.302 Sum_probs=0.0
Q ss_pred cccccchhhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhCCC----C
Q 013861 300 SFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPL----P 375 (435)
Q Consensus 300 afYGPFRdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~~l----P 375 (435)
.||| |.+|+...-.+.-.+.-++-..|.+||...++. |||+||+--+ ..+-++++.+...- |
T Consensus 165 ~~~~-i~~av~~~r~~~~~~kIeVEv~~leea~~a~~a----gaDiI~LDn~---------~~e~l~~~v~~l~~~~~~~ 230 (278)
T PRK08385 165 ALVP-LEEAIRRAKEFSVYKVVEVEVESLEDALKAAKA----GADIIMLDNM---------TPEEIREVIEALKREGLRE 230 (278)
T ss_pred HHHH-HHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHc----CcCEEEECCC---------CHHHHHHHHHHHHhcCcCC
Q ss_pred eEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEeeh
Q 013861 376 IAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILT 420 (435)
Q Consensus 376 vaaYqVSGEYaMikaAa~~G~ide~~~v~Esl~~ikRAGAd~IiT 420 (435)
-..=.+|| .+=.|.+..+...|+|+|-|
T Consensus 231 ~~~leaSG-----------------GI~~~ni~~yA~tGvD~Is~ 258 (278)
T PRK08385 231 RVKIEVSG-----------------GITPENIEEYAKLDVDVISL 258 (278)
T ss_pred CEEEEEEC-----------------CCCHHHHHHHHHcCCCEEEe
No 419
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=32.74 E-value=1.7e+02 Score=28.73 Aligned_cols=73 Identities=23% Similarity=0.264 Sum_probs=49.3
Q ss_pred HHHHHHHhcccc---cccEEecccCCCcccCC---------CchHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCC
Q 013861 330 EALVEAQADESE---GADILLFSVLGSQVKPG---------LPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMI 397 (435)
Q Consensus 330 EAlre~~~D~~E---GADilM~~~~~~~VKPa---------l~YLDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G~i 397 (435)
|-+.++...++| |||.|=+. +|+-..++ -...+|++.+|+..++||.+ -++.
T Consensus 103 ~~~~~~a~~~~~~~~~~d~ielN-~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~~~~pv~v-Ki~~-------------- 166 (300)
T TIGR01037 103 EEFAEVAEKLEKAPPYVDAYELN-LSCPHVKGGGIAIGQDPELSADVVKAVKDKTDVPVFA-KLSP-------------- 166 (300)
T ss_pred HHHHHHHHHHHhccCccCEEEEE-CCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEE-ECCC--------------
Confidence 445666666763 59999866 66655443 12378999999999999864 3442
Q ss_pred chhhHHHHHHHHHHHhcccEee
Q 013861 398 DEQRVMMESLMCLRRAGADIIL 419 (435)
Q Consensus 398 de~~~v~Esl~~ikRAGAd~Ii 419 (435)
+.+ -+.|....+..+|+|.|.
T Consensus 167 ~~~-~~~~~a~~l~~~G~d~i~ 187 (300)
T TIGR01037 167 NVT-DITEIAKAAEEAGADGLT 187 (300)
T ss_pred Chh-hHHHHHHHHHHcCCCEEE
Confidence 222 235666778899999985
No 420
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=32.73 E-value=37 Score=35.90 Aligned_cols=47 Identities=21% Similarity=0.289 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHcCCCee---cCCCCCCchHHHHHHHHHHCCCCCceeec
Q 013861 245 VHQLCKQAVSQARAGADVV---SPSDMMDGRVGAIRAALDAEGFQHVSIMS 292 (435)
Q Consensus 245 v~~Lak~Avs~A~AGADiV---APSDMMDGrVgAIR~aLD~~Gf~~v~IMS 292 (435)
++...+|-..+++||||+| .|+.==---++.|++.|++.|. ++++++
T Consensus 30 v~atv~QI~~L~~aGceivRvavp~~~~a~al~~I~~~l~~~g~-~iPlVA 79 (359)
T PF04551_consen 30 VEATVAQIKRLEEAGCEIVRVAVPDMEAAEALKEIKKRLRALGS-PIPLVA 79 (359)
T ss_dssp HHHHHHHHHHHHHCT-SEEEEEE-SHHHHHHHHHHHHHHHCTT--SS-EEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHHHhhccCCC-CCCeee
No 421
>cd08560 GDPD_EcGlpQ_like_1 Glycerophosphodiester phosphodiesterase domain similar to Escherichia coli periplasmic phosphodiesterase (GlpQ) include uncharacterized proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and their hypothetical homologs. Members in this subfamily show high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=32.61 E-value=2.7e+02 Score=29.09 Aligned_cols=62 Identities=15% Similarity=0.149 Sum_probs=33.4
Q ss_pred hHHHHHHHHhhCCCCeEEEEechHHHHHHHH---HHC--CCCchhhHHHHHHHH-HHHhcccEeehhcH
Q 013861 361 YLDVIRLLRDKYPLPIAAYQVSGEYSMIKAG---GAL--KMIDEQRVMMESLMC-LRRAGADIILTYFA 423 (435)
Q Consensus 361 YLDIIr~vk~~~~lPvaaYqVSGEYaMikaA---a~~--G~ide~~~v~Esl~~-ikRAGAd~IiTYfA 423 (435)
.-+.++++++ .+|.|.+|-|-=|-.++.-. .+. ...+...-+.+-+.. ++++|.|.|+|=|.
T Consensus 280 ~~~~v~~Ah~-~GL~V~~WTvr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvDGvftD~p 347 (356)
T cd08560 280 PSEYAKAAKA-AGLDIITWTLERSGPLASGGGWYYQTIEDVINNDGDMYNVLDVLARDVGILGIFSDWP 347 (356)
T ss_pred CHHHHHHHHH-cCCEEEEEEeecCcccccCcccccccccccccccccHHHHHHHHHHhcCCCEEEccCC
Confidence 4577888766 59999999993221111000 000 001122223333333 45999999998653
No 422
>COG5561 Predicted metal-binding protein [Function unknown]
Probab=32.59 E-value=48 Score=29.29 Aligned_cols=81 Identities=25% Similarity=0.375 Sum_probs=53.2
Q ss_pred chHHHHHHHHHHCCC--CCceeechhhhhcccccccchhhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEec
Q 013861 271 GRVGAIRAALDAEGF--QHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLF 348 (435)
Q Consensus 271 GrVgAIR~aLD~~Gf--~~v~IMSYSaKyASafYGPFRdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~ 348 (435)
|.|+-.+.+=..+|. .-|-||++.+ .+-.|. |.-| |.-. ++-..||||.|=|
T Consensus 9 G~v~CfKA~ne~~g~Fe~yv~viaf~t-------------CGgCpG---rlvp-----n~~k-----~lk~~egaeaihf 62 (101)
T COG5561 9 GEVRCFKAANEGEGKFEEYVRVIAFIT-------------CGGCPG---RLVP-----NQIK-----QLKGKEGAEAIHF 62 (101)
T ss_pred chHHHHHHHhcccccccccEEEEEEEE-------------cCCCCc---chhH-----HHHH-----HHhhccccceeee
Confidence 566666666655654 3367776643 444443 3322 3322 3344799998877
Q ss_pred ccCCCcccCCCchH--HHH-HHHHhhCCCCeE
Q 013861 349 SVLGSQVKPGLPYL--DVI-RLLRDKYPLPIA 377 (435)
Q Consensus 349 ~~~~~~VKPal~YL--DII-r~vk~~~~lPva 377 (435)
|.---.-||.-||+ |=| +.+-+.+.+||.
T Consensus 63 asCml~~~PkCpy~~~eei~Kk~ie~~~i~Vv 94 (101)
T COG5561 63 ASCMLAFKPKCPYASAEEIAKKEIEKMGIKVV 94 (101)
T ss_pred eeeeeccCCCCCccCHHHHHHHHHHHhCCcEE
Confidence 66666689999999 877 888888999984
No 423
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=32.30 E-value=1.1e+02 Score=31.78 Aligned_cols=47 Identities=11% Similarity=0.113 Sum_probs=35.1
Q ss_pred HHHHHHHHHhccccc--ccEEecccCCCcccCCCc----hHHHHHHHHhhCCCC-eEEEEe
Q 013861 328 YREALVEAQADESEG--ADILLFSVLGSQVKPGLP----YLDVIRLLRDKYPLP-IAAYQV 381 (435)
Q Consensus 328 ~~EAlre~~~D~~EG--ADilM~~~~~~~VKPal~----YLDIIr~vk~~~~lP-vaaYqV 381 (435)
..|.+..+..-++.| +|+|. +-++.- -+|.|+.+|+.++.| |.+=+|
T Consensus 92 t~e~~~r~~~lv~a~~~~d~i~-------~D~ahg~s~~~~~~i~~i~~~~p~~~vi~GnV 145 (321)
T TIGR01306 92 KACEYEFVTQLAEEALTPEYIT-------IDIAHGHSNSVINMIKHIKTHLPDSFVIAGNV 145 (321)
T ss_pred CHHHHHHHHHHHhcCCCCCEEE-------EeCccCchHHHHHHHHHHHHhCCCCEEEEecC
Confidence 345556666667778 89999 888654 489999999999877 666555
No 424
>cd00957 Transaldolase_TalAB Transaldolases including both TalA and TalB. The enzyme catalyses the reversible transfer of a dyhydroxyacetone moiety, derived from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. The catalytic mechanism is similar to other class I aldolases. The enzyme is found in the non-oxidative branch of the pentose phosphate pathway and forms a dimer in solution.
Probab=32.29 E-value=53 Score=33.86 Aligned_cols=23 Identities=39% Similarity=0.400 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHcCCCeecC
Q 013861 243 ETVHQLCKQAVSQARAGADVVSP 265 (435)
Q Consensus 243 ~Tv~~Lak~Avs~A~AGADiVAP 265 (435)
.|+-.-..||+.-|+|||++|+|
T Consensus 153 ~TlvFS~~Qa~~aa~AGa~~ISP 175 (313)
T cd00957 153 LTLLFSFAQAVACAEAGVTLISP 175 (313)
T ss_pred eeeecCHHHHHHHHHcCCCEEEe
Confidence 34444467999999999999999
No 425
>cd08612 GDPD_GDE4 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function has not yet been elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests GDE4 may play some distinct role from other members of the GDE family.
Probab=32.24 E-value=1e+02 Score=30.63 Aligned_cols=49 Identities=16% Similarity=0.252 Sum_probs=37.6
Q ss_pred HHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEeehhcHHHHHHHHh
Q 013861 362 LDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTYFALQAARCLC 431 (435)
Q Consensus 362 LDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G~ide~~~v~Esl~~ikRAGAd~IiTYfA~~~a~~L~ 431 (435)
-+.++.+++ .+++|.+|-| |.. |.+..+.+.|+|.|||-+-..+.++|.
T Consensus 251 ~~~v~~~~~-~G~~v~vWTV----------------Nd~----~~~~~l~~~GVdgIiTD~P~~l~~~l~ 299 (300)
T cd08612 251 PSLFRHLQK-RGIQVYGWVL----------------NDE----EEFERAFELGADGVMTDYPTKLREFLD 299 (300)
T ss_pred HHHHHHHHH-CCCEEEEeec----------------CCH----HHHHHHHhcCCCEEEeCCHHHHHHHHh
Confidence 366777665 4899999988 443 455667778999999999988888874
No 426
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=32.18 E-value=65 Score=33.23 Aligned_cols=44 Identities=32% Similarity=0.482 Sum_probs=39.4
Q ss_pred HHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhCCCCeEEE
Q 013861 328 YREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAAY 379 (435)
Q Consensus 328 ~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~~lPvaaY 379 (435)
-++||..+..=++-|||+|. -|++.-+|-|+.+.+..++|+-+=
T Consensus 165 ld~AI~Ra~AY~eAGAD~if--------~~al~~~e~i~~f~~av~~pl~~N 208 (289)
T COG2513 165 LDDAIERAQAYVEAGADAIF--------PEALTDLEEIRAFAEAVPVPLPAN 208 (289)
T ss_pred HHHHHHHHHHHHHcCCcEEc--------cccCCCHHHHHHHHHhcCCCeeeE
Confidence 78999999999999999998 689999999999999998776553
No 427
>PTZ00411 transaldolase-like protein; Provisional
Probab=32.15 E-value=61 Score=33.74 Aligned_cols=22 Identities=41% Similarity=0.477 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHcCCCeecC
Q 013861 244 TVHQLCKQAVSQARAGADVVSP 265 (435)
Q Consensus 244 Tv~~Lak~Avs~A~AGADiVAP 265 (435)
|+-.-..||+.-|+|||++|||
T Consensus 166 TlvFS~~QA~aaaeAGa~~ISP 187 (333)
T PTZ00411 166 TLLFSFAQAVACAQAGVTLISP 187 (333)
T ss_pred eEecCHHHHHHHHHcCCCEEEe
Confidence 4444467999999999999999
No 428
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=32.14 E-value=1.1e+02 Score=29.46 Aligned_cols=151 Identities=17% Similarity=0.254 Sum_probs=96.5
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHC---CCeEEEeeecccCCCCCCcceeec
Q 013861 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRY---PDLVIYTDVALDPYSSDGHDGIVR 234 (435)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~---Pdl~IitDVcLc~YTshGHcGIv~ 234 (435)
.+++.++.+++.||+.+=+= ..++ + .-.+|+.|+++| |+++|-+
T Consensus 26 ~a~~~~~al~~~Gi~~iEit------~~~~---------~-a~~~i~~l~~~~~~~p~~~vGa----------------- 72 (213)
T PRK06552 26 EALKISLAVIKGGIKAIEVT------YTNP---------F-ASEVIKELVELYKDDPEVLIGA----------------- 72 (213)
T ss_pred HHHHHHHHHHHCCCCEEEEE------CCCc---------c-HHHHHHHHHHHcCCCCCeEEee-----------------
Confidence 58999999999999998761 1111 1 236899999999 4666643
Q ss_pred CCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCCCceeechhhhhcccccccchhhhcCCCC
Q 013861 235 EDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPR 314 (435)
Q Consensus 235 e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMMDGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRdA~~Sap~ 314 (435)
|.|.|-+ |+-...+|||+.+---.+-+ .+-+...++|. +++ |
T Consensus 73 --GTV~~~~-------~~~~a~~aGA~FivsP~~~~----~v~~~~~~~~i---~~i---------------------P- 114 (213)
T PRK06552 73 --GTVLDAV-------TARLAILAGAQFIVSPSFNR----ETAKICNLYQI---PYL---------------------P- 114 (213)
T ss_pred --eeCCCHH-------HHHHHHHcCCCEEECCCCCH----HHHHHHHHcCC---CEE---------------------C-
Confidence 4455544 44556789999764333322 22233444543 222 1
Q ss_pred CCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCch-HHHHHHHHhhCC-CCeEEEEechHHHHHHHHH
Q 013861 315 FGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPY-LDVIRLLRDKYP-LPIAAYQVSGEYSMIKAGG 392 (435)
Q Consensus 315 fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~Y-LDIIr~vk~~~~-lPvaaYqVSGEYaMikaAa 392 (435)
| ..+..|++... +.|||+|- +=|+..+ ++-|+.++..++ +|+.+
T Consensus 115 -G--------~~T~~E~~~A~----~~Gad~vk-------lFPa~~~G~~~ik~l~~~~p~ip~~a-------------- 160 (213)
T PRK06552 115 -G--------CMTVTEIVTAL----EAGSEIVK-------LFPGSTLGPSFIKAIKGPLPQVNVMV-------------- 160 (213)
T ss_pred -C--------cCCHHHHHHHH----HcCCCEEE-------ECCcccCCHHHHHHHhhhCCCCEEEE--------------
Confidence 1 23556665543 58999999 6554322 677889998886 88765
Q ss_pred HCCCCchhhHHHHHHHHHHHhcccEee
Q 013861 393 ALKMIDEQRVMMESLMCLRRAGADIIL 419 (435)
Q Consensus 393 ~~G~ide~~~v~Esl~~ikRAGAd~Ii 419 (435)
-|-++. |.+..+..+||+.+-
T Consensus 161 -tGGI~~-----~N~~~~l~aGa~~va 181 (213)
T PRK06552 161 -TGGVNL-----DNVKDWFAAGADAVG 181 (213)
T ss_pred -ECCCCH-----HHHHHHHHCCCcEEE
Confidence 455664 667788899999854
No 429
>PRK06245 cofG FO synthase subunit 1; Reviewed
Probab=32.13 E-value=1.8e+02 Score=29.09 Aligned_cols=31 Identities=16% Similarity=0.189 Sum_probs=23.6
Q ss_pred CCCcee-echhhhHHHHHHHHHHcCCCeEEEee
Q 013861 147 MPGCYR-LGWRHGLVQEVAKARDVGVNSVVLFP 178 (435)
Q Consensus 147 MPGv~r-~s~~~~l~~~v~~~~~~GI~sv~LFg 178 (435)
-+|.++ ++.+ .++++++++.+.|++.|++-|
T Consensus 34 ~~~~~~~ls~e-ei~~~~~~~~~~G~~ei~l~g 65 (336)
T PRK06245 34 DPGQPSLLSPE-EVKEILRRGADAGCTEALFTF 65 (336)
T ss_pred CCCccCcCCHH-HHHHHHHHHHHCCCCEEEEec
Confidence 334333 5665 699999999999999988864
No 430
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=32.07 E-value=2e+02 Score=26.38 Aligned_cols=44 Identities=23% Similarity=0.292 Sum_probs=31.1
Q ss_pred HHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEe
Q 013861 159 LVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYT 217 (435)
Q Consensus 159 l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~Iit 217 (435)
+..++-+..+..=.+|.|+|--+ +.+.++.+.|++.||++.|..
T Consensus 34 l~~~ll~~~~~~~~~v~llG~~~---------------~~~~~~~~~l~~~yp~l~i~g 77 (171)
T cd06533 34 LMPALLELAAQKGLRVFLLGAKP---------------EVLEKAAERLRARYPGLKIVG 77 (171)
T ss_pred HHHHHHHHHHHcCCeEEEECCCH---------------HHHHHHHHHHHHHCCCcEEEE
Confidence 55555554443336777878522 567889999999999999876
No 431
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=32.03 E-value=1e+02 Score=30.68 Aligned_cols=83 Identities=19% Similarity=0.216 Sum_probs=52.2
Q ss_pred eechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcce
Q 013861 152 RLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDG 231 (435)
Q Consensus 152 r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTshGHcG 231 (435)
|++.+ .+++.++++.+.|+..|-| +|..|. ..|. -+.+-++.||+++|++ +..-|+|+-
T Consensus 145 ~~~~~-~~~~~~~~~~~~Ga~~i~l--------~DT~G~--~~P~-~v~~lv~~l~~~~~~~---------~i~~H~Hnd 203 (274)
T cd07938 145 EVPPE-RVAEVAERLLDLGCDEISL--------GDTIGV--ATPA-QVRRLLEAVLERFPDE---------KLALHFHDT 203 (274)
T ss_pred CCCHH-HHHHHHHHHHHcCCCEEEE--------CCCCCc--cCHH-HHHHHHHHHHHHCCCC---------eEEEEECCC
Confidence 34554 5888889999999887554 344454 2232 2456788999999873 445588863
Q ss_pred eecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCC
Q 013861 232 IVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDM 268 (435)
Q Consensus 232 Iv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDM 268 (435)
. | .=..-++.-.+||||+|--|=.
T Consensus 204 ~----G---------lA~AN~laA~~aGa~~id~t~~ 227 (274)
T cd07938 204 R----G---------QALANILAALEAGVRRFDSSVG 227 (274)
T ss_pred C----C---------hHHHHHHHHHHhCCCEEEEecc
Confidence 2 1 0112256667999998754433
No 432
>PRK08341 amidophosphoribosyltransferase; Provisional
Probab=31.89 E-value=76 Score=34.03 Aligned_cols=97 Identities=25% Similarity=0.279 Sum_probs=63.2
Q ss_pred HcCCCeecCCCCCC--chHHHHHHHHHHCCCCCceeechhhh-hcccccccchhhhcCCCCCCCccccCCCCCCHHHHHH
Q 013861 257 RAGADVVSPSDMMD--GRVGAIRAALDAEGFQHVSIMSYTAK-YASSFYGPFREALDSNPRFGDKKTYQMNPANYREALV 333 (435)
Q Consensus 257 ~AGADiVAPSDMMD--GrVgAIR~aLD~~Gf~~v~IMSYSaK-yASafYGPFRdA~~Sap~fgDRktYQmdp~N~~EAlr 333 (435)
-.|-+||-=-|+++ .++.++.+.|.++|-..|.+-+=|-. -..+||| +|-.+++| |.
T Consensus 332 v~gk~VlLVDD~IttGtTl~~~~~~L~~aGAk~V~~~~~spp~~~pc~~g-------------------id~~~~~~-li 391 (442)
T PRK08341 332 INGKRVVLVDDSIVRGTTMKRIVKMLRDAGAREVHVRIASPPIRYPCYMG-------------------IDIPTRHE-LI 391 (442)
T ss_pred cCCCEEEEEeeeeccHHHHHHHHHHHHhcCCcEEEEEEcCCCccCCCcee-------------------eecCCHHH-Hh
Confidence 36889999999998 78999999999999988888773333 2446888 33333333 32
Q ss_pred HHHhccc-----ccccEEecccCCCcccCCCchHHHHHHHHhhCCCCeEEEEechHHH
Q 013861 334 EAQADES-----EGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYS 386 (435)
Q Consensus 334 e~~~D~~-----EGADilM~~~~~~~VKPal~YLDIIr~vk~~~~lPvaaYqVSGEYa 386 (435)
...++++ =|||-|- ||.+=-..+.--.--++..-.+|+|-
T Consensus 392 a~~~~~eei~~~ig~dsl~-------------~ls~e~l~~~~~~~~~c~~cf~g~yp 436 (442)
T PRK08341 392 AAWGSVEDIRKEIGADSLA-------------YLSVEGLKRAVGTEDLCMACLTGEYP 436 (442)
T ss_pred hcCCCHHHHHHHhCCCEEe-------------ccCHHHHHHHhCCCCeeeeeCCCCcc
Confidence 2233333 3999998 77653332221112367777888885
No 433
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=31.73 E-value=1.5e+02 Score=30.54 Aligned_cols=107 Identities=26% Similarity=0.231 Sum_probs=66.1
Q ss_pred HHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCcc
Q 013861 160 VQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVI 239 (435)
Q Consensus 160 ~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTshGHcGIv~e~g~I 239 (435)
.+.++.+.+.|+..|-+|-... + ...+.+.|+.+|+.--++.+ -++ .+|.
T Consensus 91 ~~dl~~a~~~gvd~iri~~~~~-----e--------~~~~~~~i~~ak~~G~~v~~--~l~----~a~~----------- 140 (337)
T PRK08195 91 VDDLKMAYDAGVRVVRVATHCT-----E--------ADVSEQHIGLARELGMDTVG--FLM----MSHM----------- 140 (337)
T ss_pred HHHHHHHHHcCCCEEEEEEecc-----h--------HHHHHHHHHHHHHCCCeEEE--EEE----eccC-----------
Confidence 4668999999999988764211 1 11367899999988644322 111 1221
Q ss_pred ccHHHHHHHHHHHHHHHHcCCCeecCCCCCC--------chHHHHHHHHHH---CCC--CCceeechhhhhcc
Q 013861 240 MNDETVHQLCKQAVSQARAGADVVSPSDMMD--------GRVGAIRAALDA---EGF--QHVSIMSYTAKYAS 299 (435)
Q Consensus 240 dND~Tv~~Lak~Avs~A~AGADiVAPSDMMD--------GrVgAIR~aLD~---~Gf--~~v~IMSYSaKyAS 299 (435)
.|.+.|.+++-...++|||.|.-.|+.= -+|.++|+.|+. -|| +|..=|+++.-.+.
T Consensus 141 ---~~~e~l~~~a~~~~~~Ga~~i~i~DT~G~~~P~~v~~~v~~l~~~l~~~i~ig~H~HnnlGla~ANslaA 210 (337)
T PRK08195 141 ---APPEKLAEQAKLMESYGAQCVYVVDSAGALLPEDVRDRVRALRAALKPDTQVGFHGHNNLGLGVANSLAA 210 (337)
T ss_pred ---CCHHHHHHHHHHHHhCCCCEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCCeEEEEeCCCcchHHHHHHHH
Confidence 1446666777777789999999888753 467788877731 133 34444555444333
No 434
>PRK15425 gapA glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=31.67 E-value=32 Score=35.67 Aligned_cols=52 Identities=31% Similarity=0.477 Sum_probs=30.8
Q ss_pred chHHH--HHHHHHHCCCCCce--------eechhhhhcccccccchhhhcC---CCCCCCccccCC
Q 013861 271 GRVGA--IRAALDAEGFQHVS--------IMSYTAKYASSFYGPFREALDS---NPRFGDKKTYQM 323 (435)
Q Consensus 271 GrVgA--IR~aLD~~Gf~~v~--------IMSYSaKyASafYGPFRdA~~S---ap~fgDRktYQm 323 (435)
||||. .|.+|...+++=|+ .|+|--||=|.+ |.|...+.. ...|++++-...
T Consensus 11 GRIGr~~~r~~~~~~~~~vvaiNd~~~~~~~ayll~yDs~h-g~~~~~v~~~~~~l~v~g~~I~v~ 75 (331)
T PRK15425 11 GRIGRIVFRAAQKRSDIEIVAINDLLDADYMAYMLKYDSTH-GRFDGTVEVKDGHLIVNGKKIRVT 75 (331)
T ss_pred ChHHHHHHHHHHHCCCCEEEEEecCCCHHHHHHHHccccCC-CCcCCcEEecCCEEEECCeEEEEE
Confidence 67763 35555443443333 588999999975 999865532 333555543333
No 435
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=31.64 E-value=46 Score=33.53 Aligned_cols=58 Identities=21% Similarity=0.317 Sum_probs=37.6
Q ss_pred ccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhCCCCeEEE
Q 013861 320 TYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAAY 379 (435)
Q Consensus 320 tYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~~lPvaaY 379 (435)
-..+||.-..++-.-++.=++-|.|.+| +-||+===.---+.+++++|++++||+.-.
T Consensus 19 ~tliDP~k~~~~~ei~~~~~~~GTDaIm--IGGS~gvt~~~~~~~v~~ik~~~~lPvilf 76 (240)
T COG1646 19 LTLIDPDKTEEADEIAEAAAEAGTDAIM--IGGSDGVTEENVDNVVEAIKERTDLPVILF 76 (240)
T ss_pred EEEeCcccccccHHHHHHHHHcCCCEEE--ECCcccccHHHHHHHHHHHHhhcCCCEEEe
Confidence 3467887655544434444457899999 555551111124778999999999998754
No 436
>PRK07094 biotin synthase; Provisional
Probab=31.62 E-value=2e+02 Score=28.42 Aligned_cols=80 Identities=23% Similarity=0.328 Sum_probs=46.3
Q ss_pred CccccCCCCCCHHHHHHHHHhcccccccEEecccCCC-cccCCCchHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCC
Q 013861 317 DKKTYQMNPANYREALVEAQADESEGADILLFSVLGS-QVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALK 395 (435)
Q Consensus 317 DRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~-~VKPal~YLDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G 395 (435)
..+.|.+++ +|.+.+++.=.+.|..-+.|+ -|. ..-+---++++++.+++..++++. +| .|
T Consensus 64 ~~~r~~ls~---eei~~~~~~~~~~g~~~i~l~-gG~~~~~~~~~l~~l~~~i~~~~~l~i~---~~-----------~g 125 (323)
T PRK07094 64 NIERYRLSP---EEILECAKKAYELGYRTIVLQ-SGEDPYYTDEKIADIIKEIKKELDVAIT---LS-----------LG 125 (323)
T ss_pred CCcCcCCCH---HHHHHHHHHHHHCCCCEEEEe-cCCCCCCCHHHHHHHHHHHHccCCceEE---Ee-----------cC
Confidence 334666655 444444444345788888754 232 112223478999999987666543 22 13
Q ss_pred CCchhhHHHHHHHHHHHhcccEee
Q 013861 396 MIDEQRVMMESLMCLRRAGADIIL 419 (435)
Q Consensus 396 ~ide~~~v~Esl~~ikRAGAd~Ii 419 (435)
.++ -|.+..+++||+|.+.
T Consensus 126 ~~~-----~e~l~~Lk~aG~~~v~ 144 (323)
T PRK07094 126 ERS-----YEEYKAWKEAGADRYL 144 (323)
T ss_pred CCC-----HHHHHHHHHcCCCEEE
Confidence 333 3556677888888764
No 437
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=31.58 E-value=2.5e+02 Score=28.38 Aligned_cols=56 Identities=21% Similarity=0.207 Sum_probs=39.7
Q ss_pred CCHHHHHHHHHHHCCC-eEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHH
Q 013861 197 GLVPRTIWLLKDRYPD-LVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGA 275 (435)
Q Consensus 197 g~v~raIr~iK~~~Pd-l~IitDVcLc~YTshGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMMDGrVgA 275 (435)
|-+..+++.+|+++|+ ..|+++| + | .++|...+++|||+|--..| ....
T Consensus 166 g~i~~~v~~~k~~~p~~~~I~VEv--------------------~---t----leea~~A~~~GaDiI~LDn~---~~e~ 215 (273)
T PRK05848 166 KDLKEFIQHARKNIPFTAKIEIEC--------------------E---S----LEEAKNAMNAGADIVMCDNM---SVEE 215 (273)
T ss_pred CcHHHHHHHHHHhCCCCceEEEEe--------------------C---C----HHHHHHHHHcCCCEEEECCC---CHHH
Confidence 4578899999999994 7777654 2 1 24677788999999985444 4556
Q ss_pred HHHHHHH
Q 013861 276 IRAALDA 282 (435)
Q Consensus 276 IR~aLD~ 282 (435)
++++...
T Consensus 216 l~~~v~~ 222 (273)
T PRK05848 216 IKEVVAY 222 (273)
T ss_pred HHHHHHH
Confidence 6666654
No 438
>COG0294 FolP Dihydropteroate synthase and related enzymes [Coenzyme metabolism]
Probab=31.56 E-value=1.5e+02 Score=29.90 Aligned_cols=88 Identities=25% Similarity=0.256 Sum_probs=60.4
Q ss_pred HHHHHHHHhcccccccEEecccCCCcccCCCchHH----------HHHHHHhhCCCCeEEEEechHHHH-HHHHHHCCCC
Q 013861 329 REALVEAQADESEGADILLFSVLGSQVKPGLPYLD----------VIRLLRDKYPLPIAAYQVSGEYSM-IKAGGALKMI 397 (435)
Q Consensus 329 ~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLD----------IIr~vk~~~~lPvaaYqVSGEYaM-ikaAa~~G~i 397 (435)
..|+..+..-++||||+|= +=|..-.|+-.+.| ||+.+++. .....|.|-.+++= ++.|..+| .
T Consensus 31 ~~a~~~a~~~~~~Ga~iId--iGgeStrpg~~~vs~~~E~~Rv~Pvl~~i~~~--~~~v~isvdt~r~~va~~a~~aG-~ 105 (274)
T COG0294 31 DDALKHADKMIAEGADIID--IGGESTRPGAEFVSVEEELERVDPVLEAVRSP--ESDVAISVDTSRAEVAPLALGAG-A 105 (274)
T ss_pred HHHHHHHHHHHhCCCcEEE--eCCccCCCCCCccChHHHHHHHHHHHHHhhcc--CCceeEeccccchHHHHHHHHcc-c
Confidence 5599999999999999998 66777788865543 44455553 45666667666655 77788888 5
Q ss_pred chh---hHHH---HHHHHHH-HhcccEeehh
Q 013861 398 DEQ---RVMM---ESLMCLR-RAGADIILTY 421 (435)
Q Consensus 398 de~---~~v~---Esl~~ik-RAGAd~IiTY 421 (435)
++- .... +.|..+. .+|+.++++.
T Consensus 106 ~~inDv~g~~~~p~~la~va~e~~~~i~lmh 136 (274)
T COG0294 106 DEINDVDGGGIDPALLAAVAAELGAPILLMH 136 (274)
T ss_pred ceeeecccCCCCHHHHHHHHHHcCCCEEEEc
Confidence 541 1111 3555566 7899999874
No 439
>PRK00668 ndk mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated
Probab=31.46 E-value=27 Score=31.13 Aligned_cols=46 Identities=20% Similarity=0.510 Sum_probs=38.5
Q ss_pred eecCCCCCCchHHHHHHHHHHCCC--CCceeechhhhhcccccccchh
Q 013861 262 VVSPSDMMDGRVGAIRAALDAEGF--QHVSIMSYTAKYASSFYGPFRE 307 (435)
Q Consensus 262 iVAPSDMMDGrVgAIR~aLD~~Gf--~~v~IMSYSaKyASafYGPFRd 307 (435)
+|=|..+..|++|.|-+.|.++|| ...-.+.-+...|..||..+++
T Consensus 7 iIKPd~~~~~~~g~Il~~i~~~Gf~I~~~k~~~ls~~~a~~fy~~~~~ 54 (134)
T PRK00668 7 IIKPDAVQRGLIGEIISRFEKKGLKIVALKMMQLSRELAEGHYAEHKE 54 (134)
T ss_pred EECchHhhcCcHHHHHHHHHHcCCEEEEeeeecCCHHHHHHHHHHhcC
Confidence 466777778999999999999999 6667788888899999975553
No 440
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=31.42 E-value=4.1e+02 Score=30.14 Aligned_cols=115 Identities=18% Similarity=0.155 Sum_probs=65.3
Q ss_pred cHHHHHHHHHHHHHHHHcCCCee--------------cCC---------CCCCchHHHHHHHHHHC----CCCCceeech
Q 013861 241 NDETVHQLCKQAVSQARAGADVV--------------SPS---------DMMDGRVGAIRAALDAE----GFQHVSIMSY 293 (435)
Q Consensus 241 ND~Tv~~Lak~Avs~A~AGADiV--------------APS---------DMMDGrVgAIR~aLD~~----Gf~~v~IMSY 293 (435)
-++.++..++.|..-.+||+|.| +|. .-.++|..-+.+.++.- | .+.+|.
T Consensus 546 I~~~i~~f~~aA~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~~~-~~~~v~-- 622 (765)
T PRK08255 546 MDRVRDDFVAAARRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVWP-AEKPMS-- 622 (765)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHHHhcC-CCCeeE--
Confidence 35688888889998899999998 563 12334444333333321 2 122221
Q ss_pred hhhhcccccccchhhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCC--CcccCC---CchHHHHHHH
Q 013861 294 TAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLG--SQVKPG---LPYLDVIRLL 368 (435)
Q Consensus 294 SaKyASafYGPFRdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~--~~VKPa---l~YLDIIr~v 368 (435)
.|....=|. ... -..+|++.-+..=.+.|+|+|-+|.-+ .+.+|. ..+.+..+.+
T Consensus 623 -~ri~~~~~~--------------~~g-----~~~~~~~~~~~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~i 682 (765)
T PRK08255 623 -VRISAHDWV--------------EGG-----NTPDDAVEIARAFKAAGADLIDVSSGQVSKDEKPVYGRMYQTPFADRI 682 (765)
T ss_pred -EEEcccccc--------------CCC-----CCHHHHHHHHHHHHhcCCcEEEeCCCCCCcCCCCCcCccccHHHHHHH
Confidence 333321110 000 123555554444446799999866422 122332 3458999999
Q ss_pred HhhCCCCeEE
Q 013861 369 RDKYPLPIAA 378 (435)
Q Consensus 369 k~~~~lPvaa 378 (435)
|+..++||.+
T Consensus 683 k~~~~~pv~~ 692 (765)
T PRK08255 683 RNEAGIATIA 692 (765)
T ss_pred HHHcCCEEEE
Confidence 9999999876
No 441
>PRK00077 eno enolase; Provisional
Probab=31.38 E-value=2.1e+02 Score=30.27 Aligned_cols=126 Identities=17% Similarity=0.234 Sum_probs=76.6
Q ss_pred chHHHHHHHHHHCCCC---CceeechhhhhcccccccchhhhcCCCCCCCccccCCC--CCCHHHHHHHHHhcccccccE
Q 013861 271 GRVGAIRAALDAEGFQ---HVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMN--PANYREALVEAQADESEGADI 345 (435)
Q Consensus 271 GrVgAIR~aLD~~Gf~---~v~IMSYSaKyASafYGPFRdA~~Sap~fgDRktYQmd--p~N~~EAlre~~~D~~EGADi 345 (435)
=++.++|+++++.||+ ++.||==++ ||.||. + ..|..+ --+.+|+++.... +.|--++
T Consensus 217 e~l~~lreAi~~ag~~~G~di~l~lD~a--as~~~~---~-----------~~y~~~~~~~s~~e~~~~~~~-l~e~y~i 279 (425)
T PRK00077 217 EALDLILEAIEKAGYKPGEDIALALDCA--ASEFYK---D-----------GKYVLEGEGLTSEEMIDYLAE-LVDKYPI 279 (425)
T ss_pred HHHHHHHHHHHHhcCCCCCceEEEEehh--hhhccc---C-----------CeeeccCCcCCHHHHHHHHHH-HHhhCCc
Confidence 4688999999999984 577875443 577881 1 123221 1255565544333 3344677
Q ss_pred EecccCCCccc-CCCc-hHHHHHHHHhhC--CCCeEEEEec-hHHHHHHHHHHCCCCchh-----h--HHHHHHHHH---
Q 013861 346 LLFSVLGSQVK-PGLP-YLDVIRLLRDKY--PLPIAAYQVS-GEYSMIKAGGALKMIDEQ-----R--VMMESLMCL--- 410 (435)
Q Consensus 346 lM~~~~~~~VK-Pal~-YLDIIr~vk~~~--~lPvaaYqVS-GEYaMikaAa~~G~ide~-----~--~v~Esl~~i--- 410 (435)
.. ++ |--+ -+|=.+++++++ .+||+.-..+ -...-++.+.+.|++|-= + .+.|++...
T Consensus 280 ~~-------iEdPl~~~D~~g~~~L~~~~~~~ipI~gdE~~~t~~~~~~~~i~~~a~d~v~ik~~~~GGitea~~ia~lA 352 (425)
T PRK00077 280 VS-------IEDGLDENDWEGWKLLTEKLGDKVQLVGDDLFVTNTKRLKKGIEKGAANSILIKVNQIGTLTETLDAIELA 352 (425)
T ss_pred EE-------EEcCCCCccHHHHHHHHHhcCCCCeEEcCCCccCCHHHHHHHHHhCCCCEEEeCccccCCHHHHHHHHHHH
Confidence 66 66 4432 356788999988 6999887743 235666666777776641 1 255555544
Q ss_pred HHhcccEeeh
Q 013861 411 RRAGADIILT 420 (435)
Q Consensus 411 kRAGAd~IiT 420 (435)
+.+|-..+++
T Consensus 353 ~~~gi~~~vs 362 (425)
T PRK00077 353 KRAGYTAVVS 362 (425)
T ss_pred HHcCCeEEEe
Confidence 5567666664
No 442
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=31.27 E-value=1.3e+02 Score=35.70 Aligned_cols=100 Identities=20% Similarity=0.263 Sum_probs=70.1
Q ss_pred hhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecC
Q 013861 156 RHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVRE 235 (435)
Q Consensus 156 ~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTshGHcGIv~e 235 (435)
|+-+.++|+++.+.||.-+-+|--+ |.=.-+..+|.+.++.- =++.+|+| ||.+ |++.
T Consensus 629 DnVi~~Fvkqaa~~GIDvFRiFDsL-------------Nwv~~M~vaidAV~e~g----kv~EatiC-YTGD----ildp 686 (1149)
T COG1038 629 DNVIREFVKQAAKSGIDVFRIFDSL-------------NWVEQMRVAIDAVREAG----KVAEATIC-YTGD----ILDP 686 (1149)
T ss_pred hHHHHHHHHHHHhcCccEEEeehhh-------------cchhhhhhHHHHHHhcC----CeEEEEEE-eccc----cCCC
Confidence 3347788999999999987777532 22223456888888774 46778887 7644 4432
Q ss_pred CCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC--------chHHHHHHHH
Q 013861 236 DGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMD--------GRVGAIRAAL 280 (435)
Q Consensus 236 ~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMMD--------GrVgAIR~aL 280 (435)
++- -=||+...+.|-..-++||||++--||-- ==|+++|+..
T Consensus 687 -~r~--kY~L~YY~~lA~el~~~GaHIlaIKDMAGLLKP~AA~~Li~aLr~~~ 736 (1149)
T COG1038 687 -GRK--KYTLDYYVKLAKELEKAGAHILAIKDMAGLLKPAAAYRLISALRETV 736 (1149)
T ss_pred -Ccc--cccHHHHHHHHHHHHhcCCcEEEehhhhhccCHHHHHHHHHHHHHhc
Confidence 211 11899999999999999999999999853 1356666654
No 443
>cd08561 GDPD_cytoplasmic_ScUgpQ2_like Glycerophosphodiester phosphodiesterase domain of Streptomyces coelicolor cytoplasmic phosphodiesterases UgpQ2 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized cytoplasmic phosphodiesterases which predominantly exist in bacteria. The prototype of this family is a putative cytoplasmic phosphodiesterase encoded by gene ulpQ2 (SCO1419) in the Streptomyces coelicolor genome. It is distantly related to the Escherichia coli cytoplasmic phosphodiesterases UgpQ that catalyzes the hydrolysis of glycerophosphodiesters at the inner side of the cytoplasmic membrane to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=31.18 E-value=97 Score=29.48 Aligned_cols=48 Identities=19% Similarity=0.151 Sum_probs=37.2
Q ss_pred HHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEeehhcHHHHHHHH
Q 013861 362 LDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTYFALQAARCL 430 (435)
Q Consensus 362 LDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G~ide~~~v~Esl~~ikRAGAd~IiTYfA~~~a~~L 430 (435)
-++|+.++++ +++|.+|-|.-+ |.+.-+.+.|.|.|+|-+...+.+||
T Consensus 202 ~~~v~~~~~~-G~~v~vWTVN~~--------------------~~~~~l~~~gVdgIiTD~p~~~~~~~ 249 (249)
T cd08561 202 PRFVRAAHAA-GLEVHVWTVNDP--------------------AEMRRLLDLGVDGIITDRPDLLLEVL 249 (249)
T ss_pred HHHHHHHHHC-CCEEEEEecCCH--------------------HHHHHHHhcCCCEEEcCCHHHHHhhC
Confidence 4788888875 999999998332 44456677799999999988777664
No 444
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=31.15 E-value=88 Score=26.89 Aligned_cols=37 Identities=24% Similarity=0.398 Sum_probs=30.2
Q ss_pred ccccccEEecccCCCcccCCCch-----HHHHHHHHhhC-CCCeEEEEec
Q 013861 339 ESEGADILLFSVLGSQVKPGLPY-----LDVIRLLRDKY-PLPIAAYQVS 382 (435)
Q Consensus 339 ~~EGADilM~~~~~~~VKPal~Y-----LDIIr~vk~~~-~lPvaaYqVS 382 (435)
.+-|+|+|. |-...+| .++++.+|+.+ ++|+...-..
T Consensus 81 ~~~g~d~v~-------l~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~ 123 (200)
T cd04722 81 RAAGADGVE-------IHGAVGYLAREDLELIRELREAVPDVKVVVKLSP 123 (200)
T ss_pred HHcCCCEEE-------EeccCCcHHHHHHHHHHHHHHhcCCceEEEEECC
Confidence 456999999 8888775 77899999988 7998888653
No 445
>PRK13305 sgbH 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=31.04 E-value=1.7e+02 Score=28.52 Aligned_cols=32 Identities=22% Similarity=0.375 Sum_probs=27.3
Q ss_pred ccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecc
Q 013861 188 TGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVAL 221 (435)
Q Consensus 188 ~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcL 221 (435)
.|.+-+-..| .+.|+.||+.||+.-|+.|.=|
T Consensus 34 VG~~L~~~~G--~~~i~~lk~~~~~~~IflDlKl 65 (218)
T PRK13305 34 AGTILCLNEG--LGAVKALREQCPDKIIVADWKV 65 (218)
T ss_pred ECHHHHHHhC--HHHHHHHHHhCCCCEEEEEeec
Confidence 5777777778 4899999999999999999876
No 446
>PLN02361 alpha-amylase
Probab=30.96 E-value=1.9e+02 Score=30.66 Aligned_cols=60 Identities=18% Similarity=0.272 Sum_probs=42.1
Q ss_pred hhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCC------------CHHHHHHHHHHHCCCeEEEeeecccC
Q 013861 157 HGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNG------------LVPRTIWLLKDRYPDLVIYTDVALDP 223 (435)
Q Consensus 157 ~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g------------~v~raIr~iK~~~Pdl~IitDVcLc~ 223 (435)
..|.+.+..+.++|+++|-|-|+. +. . +.+.|++.. =+.+.|++++++ .+-||.|+.+-+
T Consensus 29 ~~i~~kl~~l~~lG~t~iwl~P~~-~~-~---~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~--gi~vi~D~V~NH 100 (401)
T PLN02361 29 RNLEGKVPDLAKSGFTSAWLPPPS-QS-L---APEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQY--NVRAMADIVINH 100 (401)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCCC-cC-C---CCCCCCcccccccCcccCCHHHHHHHHHHHHHc--CCEEEEEEcccc
Confidence 469999999999999999998752 21 2 223444432 244566666655 699999999865
No 447
>cd08565 GDPD_pAtGDE_like Glycerophosphodiester phosphodiesterase domain of putative Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase (pAtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=30.76 E-value=98 Score=29.65 Aligned_cols=55 Identities=15% Similarity=0.175 Sum_probs=39.4
Q ss_pred cccccEEecccCCCcccCC--CchHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccE
Q 013861 340 SEGADILLFSVLGSQVKPG--LPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADI 417 (435)
Q Consensus 340 ~EGADilM~~~~~~~VKPa--l~YLDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G~ide~~~v~Esl~~ikRAGAd~ 417 (435)
+.+++.+- +-+. ...-+.++.++. +++|.+|-|- .. |.+..+.+.|+|.
T Consensus 175 ~~~~~~~~-------~~~~~~~~~~~~v~~~~~--g~~v~~WTVn----------------~~----~~~~~l~~~GVdg 225 (235)
T cd08565 175 ALKAHIVA-------VEQSLLAATWELVRAAVP--GLRLGVWTVN----------------DD----SLIRYWLACGVRQ 225 (235)
T ss_pred hccCcEEc-------cCcccccCCHHHHHHHhC--CCEEEEEccC----------------CH----HHHHHHHHcCCCE
Confidence 36788777 5555 245677887753 8999999983 22 4456777889999
Q ss_pred eehhcH
Q 013861 418 ILTYFA 423 (435)
Q Consensus 418 IiTYfA 423 (435)
|||-+-
T Consensus 226 IiTD~P 231 (235)
T cd08565 226 LTTDRP 231 (235)
T ss_pred EEeCCc
Confidence 999764
No 448
>PRK05443 polyphosphate kinase; Provisional
Probab=30.72 E-value=1.5e+02 Score=33.90 Aligned_cols=160 Identities=18% Similarity=0.220 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHHHHcCCCe--ecCCCCCCchHHHHHHHHHHCCCCCceeec----hhhhhcccccccchhhhcCCCCCC
Q 013861 243 ETVHQLCKQAVSQARAGADV--VSPSDMMDGRVGAIRAALDAEGFQHVSIMS----YTAKYASSFYGPFREALDSNPRFG 316 (435)
Q Consensus 243 ~Tv~~Lak~Avs~A~AGADi--VAPSDMMDGrVgAIR~aLD~~Gf~~v~IMS----YSaKyASafYGPFRdA~~Sap~fg 316 (435)
+.+-...+..|.+-+-|.=| .-=++|=.--+..+++.|+ .++--++. |--++-..|.++-+..+.-.|- -
T Consensus 244 ~dl~~~i~~~Lk~R~~g~~VRle~~~~mp~~~~~~L~~~l~---l~~~~~~~~~gplnl~~l~~~~~~~~~~L~~~p~-~ 319 (691)
T PRK05443 244 EDLLEALEKELKRRRFGEVVRLEVEADMPEELLEFLLEELG---LSEDDVYRVDGPLNLTDLMQLPDVDRPDLKFPPF-T 319 (691)
T ss_pred HHHHHHHHHHHHhccCCCcEEEEECCCCCHHHHHHHHHHcC---cChhHEEEcCCcccHHHHHhhcCCChhhccCCCC-C
Confidence 45666677788888888754 3334444444555555553 32222222 2223333444432322221111 1
Q ss_pred CccccCCC-CCCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhCC------CCeEEEEechHHHHHH
Q 013861 317 DKKTYQMN-PANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYP------LPIAAYQVSGEYSMIK 389 (435)
Q Consensus 317 DRktYQmd-p~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~~------lPvaaYqVSGEYaMik 389 (435)
-...=.++ ..|.=++|++ =|+|+ --|=..|-=||+.+++... +-+.-|-|++.-.+++
T Consensus 320 p~~~~~~~~~~~if~~I~~--------~DiLL-------h~PY~SF~~~~~~i~~Aa~DP~V~~Ik~tlYr~~~~s~iv~ 384 (691)
T PRK05443 320 PRRPPRLDHGGDIFAAIRE--------KDILL-------HHPYESFDPVVEFLRQAAADPDVLAIKQTLYRTSKDSPIVD 384 (691)
T ss_pred CCCCcccccCCCHHHHHhh--------CCEEE-------ECCccCchHHHHHHHHhccCCCeeEEEEEEEEecCCHHHHH
Confidence 00000011 1234444432 48999 8888777555566665443 8899999999988887
Q ss_pred H---HHHCCC-----------CchhhHHHHHHHHHHHhcccEeehhc
Q 013861 390 A---GGALKM-----------IDEQRVMMESLMCLRRAGADIILTYF 422 (435)
Q Consensus 390 a---Aa~~G~-----------ide~~~v~Esl~~ikRAGAd~IiTYf 422 (435)
| |+++|. +|++ .-......+.+||+.+|..|-
T Consensus 385 aL~~Aa~~Gk~V~vlve~karfde~-~n~~~~~~L~~aGv~V~y~~~ 430 (691)
T PRK05443 385 ALIEAAENGKQVTVLVELKARFDEE-ANIRWARRLEEAGVHVVYGVV 430 (691)
T ss_pred HHHHHHHcCCEEEEEEccCccccHH-HHHHHHHHHHHcCCEEEEccC
Confidence 7 888884 3442 445566788899999987654
No 449
>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=30.66 E-value=40 Score=35.92 Aligned_cols=71 Identities=20% Similarity=0.248 Sum_probs=40.6
Q ss_pred chHHH--HHHHHHHCCCCCcee-----------echhhhhcccccccchhhhc----CCCCCCCccccCCCCCCHHHHHH
Q 013861 271 GRVGA--IRAALDAEGFQHVSI-----------MSYTAKYASSFYGPFREALD----SNPRFGDKKTYQMNPANYREALV 333 (435)
Q Consensus 271 GrVgA--IR~aLD~~Gf~~v~I-----------MSYSaKyASafYGPFRdA~~----Sap~fgDRktYQmdp~N~~EAlr 333 (435)
||||. +|..+ +.+|.+.-| |+|--||.|.+ |+|..-+. ....+++++-....-++..
T Consensus 69 GrIGR~vlr~l~-~~~~~~~evvaINd~~~~~~~ayLl~yDS~h-G~f~~~v~~~~g~~l~v~gk~I~v~~~~dp~---- 142 (395)
T PLN03096 69 GRIGRNFLRCWH-GRKDSPLDVVAINDTGGVKQASHLLKYDSTL-GTFDADVKPVGDDAISVDGKVIKVVSDRNPL---- 142 (395)
T ss_pred CHHHHHHHHHHH-hCCCCCeEEEEEcCCCCHHHHHHHHhhcccC-CCcCCcEEEecCCEEEECCEEEEEEEcCCcc----
Confidence 99986 55433 454544333 58999999985 99986553 2233555544333322222
Q ss_pred HHHhccc-ccccEEecc
Q 013861 334 EAQADES-EGADILLFS 349 (435)
Q Consensus 334 e~~~D~~-EGADilM~~ 349 (435)
..|.. .|+|+++++
T Consensus 143 --~~~w~~~gvDiVie~ 157 (395)
T PLN03096 143 --NLPWGELGIDLVIEG 157 (395)
T ss_pred --cccccccCCCEEEEC
Confidence 14443 488888754
No 450
>cd03313 enolase Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions.
Probab=30.65 E-value=2.1e+02 Score=30.13 Aligned_cols=130 Identities=15% Similarity=0.213 Sum_probs=78.8
Q ss_pred chHHHHHHHHHHCCCC---CceeechhhhhcccccccchhhhcCCCCCCCccccC--CC-CCCHHHHHHHHHhccccccc
Q 013861 271 GRVGAIRAALDAEGFQ---HVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQ--MN-PANYREALVEAQADESEGAD 344 (435)
Q Consensus 271 GrVgAIR~aLD~~Gf~---~v~IMSYSaKyASafYGPFRdA~~Sap~fgDRktYQ--md-p~N~~EAlre~~~D~~EGAD 344 (435)
=+|..||+++++.||+ ++.||-=++ ||.||.. .+-.|. .+ --+.+||++ ...++.|--+
T Consensus 214 ~~l~~i~eAi~~~g~~~G~dv~i~lD~a--as~~~~~------------~~y~~~~~~~~~~t~~eai~-~~~~l~e~~~ 278 (408)
T cd03313 214 EALDLLVEAIEKAGYEPGKKIAIALDVA--ASEFYDE------------GKYVYDSDEGKKLTSEELID-YYKELVKKYP 278 (408)
T ss_pred HHHHHHHHHHHHhcCCCCCeEEEEEehh--hhhhccc------------CcceeccCCCcccCHHHHHH-HHHHHHHhCC
Confidence 3578899999999985 578876544 5677731 122221 00 124466554 3334444467
Q ss_pred EEecccCCCcccCCCc--hHHHHHHHHhhC--CCCeEEEEec-hHHHHHHHHHHCCCCch-----hh--HHHHHHHH---
Q 013861 345 ILLFSVLGSQVKPGLP--YLDVIRLLRDKY--PLPIAAYQVS-GEYSMIKAGGALKMIDE-----QR--VMMESLMC--- 409 (435)
Q Consensus 345 ilM~~~~~~~VKPal~--YLDIIr~vk~~~--~lPvaaYqVS-GEYaMikaAa~~G~ide-----~~--~v~Esl~~--- 409 (435)
+.. +.=-++ -++=.+++++++ .+||++-..+ -...-++.+.++|+.|- .+ -+.|++..
T Consensus 279 i~~-------iEdPl~~~D~eg~~~L~~~~g~~ipi~gdE~~~~~~~~~~~~i~~~a~d~v~ik~~~iGGite~~~ia~l 351 (408)
T cd03313 279 IVS-------IEDPFDEDDWEGWAKLTAKLGDKIQIVGDDLFVTNPERLKKGIEKKAANALLIKVNQIGTLTETIEAIKL 351 (408)
T ss_pred cEE-------EEeCCCCcCHHHHHHHHHhcCCCCeEEcCCcccCCHHHHHHHHHhCCCCEEEEcccccCCHHHHHHHHHH
Confidence 766 663333 367788999997 8999887733 13455666777777654 12 25555554
Q ss_pred HHHhcccEeehhc
Q 013861 410 LRRAGADIILTYF 422 (435)
Q Consensus 410 ikRAGAd~IiTYf 422 (435)
.+.+|-.++++..
T Consensus 352 A~~~G~~~~~sh~ 364 (408)
T cd03313 352 AKKNGYGVVVSHR 364 (408)
T ss_pred HHHcCCeEEccCC
Confidence 4677888888543
No 451
>PRK08005 epimerase; Validated
Probab=30.47 E-value=3.7e+02 Score=26.21 Aligned_cols=77 Identities=19% Similarity=0.224 Sum_probs=49.8
Q ss_pred CCCCCHHHHHHHHHhcccccccEEecccCC-CcccCCCchHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhh
Q 013861 323 MNPANYREALVEAQADESEGADILLFSVLG-SQVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQR 401 (435)
Q Consensus 323 mdp~N~~EAlre~~~D~~EGADilM~~~~~-~~VKPal~YLDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G~ide~~ 401 (435)
.|+.|.+|-+.+.. +.|+|.|=+-+.- ..|.--.+=.++|+.+|+.+++|+=+ |. |++ +.++
T Consensus 10 ad~~~l~~el~~l~---~~g~d~lHiDvMDG~FVPN~tfG~~~i~~l~~~t~~~~Dv-HL-----Mv~--------~P~~ 72 (210)
T PRK08005 10 ADPLRYAEALTALH---DAPLGSLHLDIEDTSFINNITFGMKTIQAVAQQTRHPLSF-HL-----MVS--------SPQR 72 (210)
T ss_pred CCHHHHHHHHHHHH---HCCCCEEEEeccCCCcCCccccCHHHHHHHHhcCCCCeEE-Ee-----ccC--------CHHH
Confidence 56777777777765 3699997655553 44444344499999999988888533 32 222 3333
Q ss_pred HHHHHHHHHHHhcccEeeh
Q 013861 402 VMMESLMCLRRAGADIILT 420 (435)
Q Consensus 402 ~v~Esl~~ikRAGAd~IiT 420 (435)
.+..|..||||+|.-
T Consensus 73 ----~i~~~~~~gad~It~ 87 (210)
T PRK08005 73 ----WLPWLAAIRPGWIFI 87 (210)
T ss_pred ----HHHHHHHhCCCEEEE
Confidence 345677789997653
No 452
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=30.37 E-value=90 Score=31.19 Aligned_cols=91 Identities=9% Similarity=-0.010 Sum_probs=53.5
Q ss_pred HHHHHHHHHcCCCeEEEeecCCCC-CCCcccCcCcCCCCC---HHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecC
Q 013861 160 VQEVAKARDVGVNSVVLFPKVPDA-LKSPTGDEAYNDNGL---VPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVRE 235 (435)
Q Consensus 160 ~~~v~~~~~~GI~sv~LFgvi~~~-~Kd~~Gs~A~~~~g~---v~raIr~iK~~~Pdl~IitDVcLc~YTshGHcGIv~e 235 (435)
.+.++.+++.|++.|-+|-.+++. .+...+ .+.+.. +.++|+..|+..-++.+..--.-|||+.
T Consensus 77 ~~~~~~A~~~g~~~i~i~~~~S~~h~~~~~~---~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~~~~~r~--------- 144 (280)
T cd07945 77 DKSVDWIKSAGAKVLNLLTKGSLKHCTEQLR---KTPEEHFADIREVIEYAIKNGIEVNIYLEDWSNGMRD--------- 144 (280)
T ss_pred HHHHHHHHHCCCCEEEEEEeCCHHHHHHHHC---cCHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCCCCcC---------
Confidence 456888999999999998754432 111111 122333 3344666666554433322224566621
Q ss_pred CCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC
Q 013861 236 DGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMD 270 (435)
Q Consensus 236 ~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMMD 270 (435)
+.+.+.+.+-...++|||.|.=.|+.=
T Consensus 145 --------~~~~~~~~~~~~~~~G~~~i~l~DT~G 171 (280)
T cd07945 145 --------SPDYVFQLVDFLSDLPIKRIMLPDTLG 171 (280)
T ss_pred --------CHHHHHHHHHHHHHcCCCEEEecCCCC
Confidence 124566666667889999999888753
No 453
>COG0035 Upp Uracil phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=30.36 E-value=1.4e+02 Score=29.54 Aligned_cols=49 Identities=22% Similarity=0.366 Sum_probs=40.1
Q ss_pred hHHHHHHHHHHc-CCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCC
Q 013861 158 GLVQEVAKARDV-GVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPY 224 (435)
Q Consensus 158 ~l~~~v~~~~~~-GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~Y 224 (435)
+++..++.+.+. |-+++.++-.|- .+..|+.+.+.|||+-|+| .++|+=
T Consensus 139 s~i~ai~~L~~~G~~~~I~~v~~vA-----------------apeGi~~v~~~~p~v~I~t-a~iD~~ 188 (210)
T COG0035 139 SAIAAIDLLKKRGGPKNIKVVSLVA-----------------APEGIKAVEKAHPDVEIYT-AAIDEG 188 (210)
T ss_pred hHHHHHHHHHHhCCCceEEEEEEEe-----------------cHHHHHHHHHhCCCCeEEE-EEeccc
Confidence 578889999999 889998888754 2568999999999999988 456663
No 454
>PF13653 GDPD_2: Glycerophosphoryl diester phosphodiesterase family; PDB: 3RLG_A 2F9R_B 1XX1_A 3RLH_A.
Probab=30.31 E-value=42 Score=23.59 Aligned_cols=19 Identities=32% Similarity=0.233 Sum_probs=13.9
Q ss_pred HHHHHHHHHhcccEeehhc
Q 013861 404 MESLMCLRRAGADIILTYF 422 (435)
Q Consensus 404 ~Esl~~ikRAGAd~IiTYf 422 (435)
-+++..+.++|+|.|+|-+
T Consensus 10 ~~~~~~~l~~GVDgI~Td~ 28 (30)
T PF13653_consen 10 PASWRELLDLGVDGIMTDY 28 (30)
T ss_dssp HHHHHHHHHHT-SEEEES-
T ss_pred HHHHHHHHHcCCCEeeCCC
Confidence 3566788899999999965
No 455
>PRK00912 ribonuclease P protein component 3; Provisional
Probab=30.19 E-value=4.3e+02 Score=25.20 Aligned_cols=97 Identities=18% Similarity=0.147 Sum_probs=62.1
Q ss_pred ccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhCCCCeEEEEec-----hHH-HHHHHH
Q 013861 318 KKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAAYQVS-----GEY-SMIKAG 391 (435)
Q Consensus 318 RktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~~lPvaaYqVS-----GEY-aMikaA 391 (435)
.+..-+++.+..+ +.+...+..++.|+|. |.|+. .-+.+.+-++..+-|.+---. |-+ ..+++|
T Consensus 58 l~GiEi~~~~~~~-~~~~~~~~~~~~d~v~-------v~~~~--~~~~~~a~~~~~vdIi~hp~~~~~~~~~~~~~~~~a 127 (237)
T PRK00912 58 FRGVEIVASNPSK-LRGLVGKFRKKVDVLA-------VHGGD--EKVNRAACENPRVDILSHPYTKRKDSGINHVLAKEA 127 (237)
T ss_pred EeeEEEecCCHHH-HHHHHHhccCcccEEE-------EeCCC--HHHHHHHHccCCCcEEeCccccCCCCCcCHHHHHHH
Confidence 4444556655544 6666677778999999 98875 344455666555555544322 222 667888
Q ss_pred HHCCCCch---hhH-----------H---HHHHHHHHHhcccEeehhcHH
Q 013861 392 GALKMIDE---QRV-----------M---MESLMCLRRAGADIILTYFAL 424 (435)
Q Consensus 392 a~~G~ide---~~~-----------v---~Esl~~ikRAGAd~IiTYfA~ 424 (435)
+++|..=| ... + .+.+...++.|+-+||+..|.
T Consensus 128 ~~~gv~lEIn~s~~~~~~~~~r~~~~~~~~~~~~~~~~~g~piiisSdAh 177 (237)
T PRK00912 128 ARNNVAIEFNLRDILKSRGGRRARTLSNFRDNLALARKYDFPLVLTSGAM 177 (237)
T ss_pred HHCCeEEEEEchHhhhhcccHHHHHHHHHHHHHHHHHhcCCCEEEeCCCC
Confidence 88776422 111 1 467788888999999998763
No 456
>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase. This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate.
Probab=30.13 E-value=1.5e+02 Score=31.00 Aligned_cols=103 Identities=26% Similarity=0.401 Sum_probs=58.0
Q ss_pred HHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcC--CCCCHHHHHHHHHHHCC-CeEEEeeecccCCCCCCcceeecCC
Q 013861 160 VQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYN--DNGLVPRTIWLLKDRYP-DLVIYTDVALDPYSSDGHDGIVRED 236 (435)
Q Consensus 160 ~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~--~~g~v~raIr~iK~~~P-dl~IitDVcLc~YTshGHcGIv~e~ 236 (435)
.+.++.+++.|. +-+++ +---|+.| +.+| .|-....--.+|+ + .|++.|||. |+++++
T Consensus 150 ~~~l~~ll~~g~--ipvi~---pi~~~~~g-~~~nvnaD~~A~~lA~al~---a~kli~ltdv~----------Gv~~~~ 210 (429)
T TIGR01890 150 TEGIRRQLDAGS--IVLLS---PLGHSPTG-ETFNLDMEDVATSVAISLK---ADKLIYFTLSP----------GISDPD 210 (429)
T ss_pred HHHHHHHHHCCC--eEEEC---CcccCCCC-CEEEeCHHHHHHHHHHHcC---CCEEEEEeCCC----------cccCCC
Confidence 577888999998 43333 33344445 3444 4444443334443 4 499999985 333323
Q ss_pred CccccHH---HHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCCCceeechh
Q 013861 237 GVIMNDE---TVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYT 294 (435)
Q Consensus 237 g~IdND~---Tv~~Lak~Avs~A~AGADiVAPSDMMDGrVgAIR~aLD~~Gf~~v~IMSYS 294 (435)
|.+...- .++.|.+. + -.+||=+.|.+..++| ++|-..+-|++..
T Consensus 211 g~~i~~i~~~~~~~l~~~-----------~-~~~~~~~kl~~a~~a~-~~gv~~v~i~~g~ 258 (429)
T TIGR01890 211 GTLAAELSPQEVESLAER-----------L-GSETTRRLLSAAVKAC-RGGVHRSHIVSYA 258 (429)
T ss_pred CCCcccCCHHHHHHHHHh-----------c-cCCCcHHHHHHHHHHH-HcCCCeEEEECCC
Confidence 4332222 23333322 1 2467777777777777 5677788888864
No 457
>cd01941 YeiC_kinase_like YeiC-like sugar kinase. Found in eukaryotes and bacteria, YeiC-like kinase is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=30.07 E-value=4.2e+02 Score=24.95 Aligned_cols=73 Identities=18% Similarity=0.141 Sum_probs=47.0
Q ss_pred CeEEEeeecccCCCCCCcceeecCCCccccHHHHH---HHHHHHHHHHHcCCCeecCCCCCCchHH-HHHHHHHHCCCC
Q 013861 212 DLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVH---QLCKQAVSQARAGADVVSPSDMMDGRVG-AIRAALDAEGFQ 286 (435)
Q Consensus 212 dl~IitDVcLc~YTshGHcGIv~e~g~IdND~Tv~---~Lak~Avs~A~AGADiVAPSDMMDGrVg-AIR~aLD~~Gf~ 286 (435)
+++++-++++|-++.-.| ... .++....+.+.. -=+.+|+..++-|..+..=+-+-|...+ .|++.|++.|..
T Consensus 1 ~v~~~G~~~~D~~~~~~~-~~~-~~~~~~~~~~~~~GG~~~Nva~~l~~lG~~~~~~~~lG~D~~g~~i~~~L~~~gI~ 77 (288)
T cd01941 1 EIVVIGAANIDLRGKVSG-SLV-PGTSNPGHVKQSPGGVGRNIAENLARLGVSVALLSAVGDDSEGESILEESEKAGLN 77 (288)
T ss_pred CeEEEEeEEEeeeecccC-ccc-cCCCCCeeEEEccCcHHHHHHHHHHHhCCCcEEEEEEecCccHHHHHHHHHHcCCc
Confidence 478888999988766545 222 222221211111 1345788888999987776666666666 599999999973
No 458
>PRK08185 hypothetical protein; Provisional
Probab=30.06 E-value=1.5e+02 Score=30.18 Aligned_cols=108 Identities=14% Similarity=0.105 Sum_probs=57.5
Q ss_pred HHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCC-CeEEEeeecccCCCCCCcceeecCCCc
Q 013861 160 VQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYP-DLVIYTDVALDPYSSDGHDGIVREDGV 238 (435)
Q Consensus 160 ~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~P-dl~IitDVcLc~YTshGHcGIv~e~g~ 238 (435)
.+.++++++.|.+|||+=+. . ++.+--+.++.+..+-.-+ ++-|=+.+ ||=|-. +++.
T Consensus 81 ~e~i~~ai~~Gf~SVM~D~S-----------~-l~~eeNi~~t~~vv~~a~~~gv~vE~El--------G~vg~~-e~~~ 139 (283)
T PRK08185 81 IEDVMRAIRCGFTSVMIDGS-----------L-LPYEENVALTKEVVELAHKVGVSVEGEL--------GTIGNT-GTSI 139 (283)
T ss_pred HHHHHHHHHcCCCEEEEeCC-----------C-CCHHHHHHHHHHHHHHHHHcCCeEEEEE--------eeccCc-cccc
Confidence 56788999999999999442 1 2222334444444432222 44443333 553321 2221
Q ss_pred c-ccHHHHHHHHHHHHHHHHc-CCCeecC-----CCCCCc---------hHHHHHHHHHHCCCCCceeechh
Q 013861 239 I-MNDETVHQLCKQAVSQARA-GADVVSP-----SDMMDG---------RVGAIRAALDAEGFQHVSIMSYT 294 (435)
Q Consensus 239 I-dND~Tv~~Lak~Avs~A~A-GADiVAP-----SDMMDG---------rVgAIR~aLD~~Gf~~v~IMSYS 294 (435)
. ..+...-.=-++|..+.+. |+|.+|+ ..+-.+ ++..|++++ ++++.-+-
T Consensus 140 ~~~~~~~~~t~peea~~f~~~TgvD~LAvaiGt~HG~y~~~~kp~L~~e~l~~I~~~~------~iPLVlHG 205 (283)
T PRK08185 140 EGGVSEIIYTDPEQAEDFVSRTGVDTLAVAIGTAHGIYPKDKKPELQMDLLKEINERV------DIPLVLHG 205 (283)
T ss_pred ccccccccCCCHHHHHHHHHhhCCCEEEeccCcccCCcCCCCCCCcCHHHHHHHHHhh------CCCEEEEC
Confidence 1 1111111123556666665 9999999 777654 455565543 56665553
No 459
>PRK13305 sgbH 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=30.03 E-value=84 Score=30.59 Aligned_cols=48 Identities=19% Similarity=0.198 Sum_probs=32.8
Q ss_pred CCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCch---HHHHHHHHhhC-CCCeEE
Q 013861 323 MNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPY---LDVIRLLRDKY-PLPIAA 378 (435)
Q Consensus 323 mdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~Y---LDIIr~vk~~~-~lPvaa 378 (435)
+|..+..||+.=+ ..+.+..|++= |=+-+.| +++|+++|+.+ +.+|++
T Consensus 10 LD~~~~~~A~~l~-~~l~~~v~~iK-------VG~~L~~~~G~~~i~~lk~~~~~~~Ifl 61 (218)
T PRK13305 10 LDHTSLEAAQRDV-TLLKDHVDIVE-------AGTILCLNEGLGAVKALREQCPDKIIVA 61 (218)
T ss_pred eCCCCHHHHHHHH-HHccccCCEEE-------ECHHHHHHhCHHHHHHHHHhCCCCEEEE
Confidence 5788899998855 44666656644 3333333 78999999987 466763
No 460
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=30.03 E-value=1.5e+02 Score=30.28 Aligned_cols=50 Identities=18% Similarity=0.124 Sum_probs=32.0
Q ss_pred HHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhCCCCeEE
Q 013861 329 REALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAA 378 (435)
Q Consensus 329 ~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~~lPvaa 378 (435)
+|.+.-+..=.+.|.|+|=.|.-...-.+...++|.++.+|+.+++||.+
T Consensus 241 ee~~~~~~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~~ik~~~~ipvi~ 290 (338)
T cd02933 241 ATFSYLAKELNKRGLAYLHLVEPRVAGNPEDQPPDFLDFLRKAFKGPLIA 290 (338)
T ss_pred HHHHHHHHHHHHcCCcEEEEecCCCCCcccccchHHHHHHHHHcCCCEEE
Confidence 44333333333468999974332221112457899999999999999987
No 461
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=29.86 E-value=55 Score=36.81 Aligned_cols=50 Identities=20% Similarity=0.304 Sum_probs=36.2
Q ss_pred cccHHHHHHHHHHHHHHHHcCCCee--cCCCCCC-chHHHHHHHHHHCCCCCceeech
Q 013861 239 IMNDETVHQLCKQAVSQARAGADVV--SPSDMMD-GRVGAIRAALDAEGFQHVSIMSY 293 (435)
Q Consensus 239 IdND~Tv~~Lak~Avs~A~AGADiV--APSDMMD-GrVgAIR~aLD~~Gf~~v~IMSY 293 (435)
-|-++|| +|....++||||+| +=-+|=| --+..||+.|.+.|+ ++++++=
T Consensus 42 ~D~~atv----~Qi~~L~~aGceiVRvtvp~~~~A~al~~I~~~L~~~g~-~iPLVAD 94 (606)
T PRK00694 42 TDVDGTV----RQICALQEWGCDIVRVTVQGLKEAQACEHIKERLIQQGI-SIPLVAD 94 (606)
T ss_pred ccHHHHH----HHHHHHHHcCCCEEEEcCCCHHHHHhHHHHHHHHhccCC-CCCEEee
Confidence 3445555 45677899999997 3333333 457899999999997 7999874
No 462
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=29.78 E-value=98 Score=31.63 Aligned_cols=41 Identities=34% Similarity=0.464 Sum_probs=28.3
Q ss_pred hHHHHHHHHhhC--CCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEeeh
Q 013861 361 YLDVIRLLRDKY--PLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILT 420 (435)
Q Consensus 361 YLDIIr~vk~~~--~lPvaaYqVSGEYaMikaAa~~G~ide~~~v~Esl~~ikRAGAd~IiT 420 (435)
.|+.|+++++.. ++||.+ .|-+..-+-+.|.| +||||+|--
T Consensus 275 ~l~~v~~l~~~~~~~ipIig---------------~GGI~s~eda~e~l----~aGAd~V~v 317 (344)
T PRK05286 275 STEVIRRLYKELGGRLPIIG---------------VGGIDSAEDAYEKI----RAGASLVQI 317 (344)
T ss_pred HHHHHHHHHHHhCCCCCEEE---------------ECCCCCHHHHHHHH----HcCCCHHHH
Confidence 577999999988 799886 34444444555554 388888643
No 463
>PF01076 Mob_Pre: Plasmid recombination enzyme; InterPro: IPR001668 With some plasmids, recombination can occur in a site specific manner that is independent of RecA. In such cases, the recombination event requires another protein called Pre. Pre is a plasmid recombination enzyme. This protein is also known as Mob (conjugative mobilisation) [].; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005727 extrachromosomal circular DNA
Probab=29.76 E-value=64 Score=30.41 Aligned_cols=39 Identities=21% Similarity=0.287 Sum_probs=34.4
Q ss_pred CCCHHHHHHHHHHHCC-CeEEEeeecccCCCCCCcceeec
Q 013861 196 NGLVPRTIWLLKDRYP-DLVIYTDVALDPYSSDGHDGIVR 234 (435)
Q Consensus 196 ~g~v~raIr~iK~~~P-dl~IitDVcLc~YTshGHcGIv~ 234 (435)
+-....++..++++|| +-++.+-|-+||=|-|=|..++-
T Consensus 101 ~~~~~~~~~~~~~r~g~~ni~~a~vH~DE~tPH~H~~~vP 140 (196)
T PF01076_consen 101 KRWFEDSLEWLQERYGNENIVSAVVHLDETTPHMHFDVVP 140 (196)
T ss_pred HHHHHHHHHHHHHHCCchhEEEEEEECCCCCcceEEEEee
Confidence 3456788999999999 78888999999999999999984
No 464
>PRK06781 amidophosphoribosyltransferase; Provisional
Probab=29.71 E-value=71 Score=34.53 Aligned_cols=97 Identities=24% Similarity=0.332 Sum_probs=63.9
Q ss_pred HcCCCeecCCCCCC--chHHHHHHHHHHCCCCCceeechhhh-hcccccccchhhhcCCCCCCCccccCCCCCCHHHHHH
Q 013861 257 RAGADVVSPSDMMD--GRVGAIRAALDAEGFQHVSIMSYTAK-YASSFYGPFREALDSNPRFGDKKTYQMNPANYREALV 333 (435)
Q Consensus 257 ~AGADiVAPSDMMD--GrVgAIR~aLD~~Gf~~v~IMSYSaK-yASafYGPFRdA~~Sap~fgDRktYQmdp~N~~EAlr 333 (435)
-.|-.|+-=-|.|- -++.++-++|.++|-..|-+..=|-. -..+||| +|-..++| |.
T Consensus 346 i~gk~VlLVDDvittGtTl~~~~~~Lk~aGA~eV~v~i~sPpi~~pc~yG-------------------id~~~~~e-li 405 (471)
T PRK06781 346 VEGKRVVMIDDSIVRGTTSKRIVRMLREAGATEVHVRIASPPLKYPCFYG-------------------IDIQTRKE-LI 405 (471)
T ss_pred cCCceEEEEeceeccchHHHHHHHHHHHcCCcEEEEEECCCCccCCcccc-------------------cCCCCHHH-HH
Confidence 34777777777664 56889999999999999988877665 3568888 44444444 44
Q ss_pred HHHhcccc-----cccEEecccCCCcccCCCchHHH---HHHHHhhCCC---CeEEEEechHHH
Q 013861 334 EAQADESE-----GADILLFSVLGSQVKPGLPYLDV---IRLLRDKYPL---PIAAYQVSGEYS 386 (435)
Q Consensus 334 e~~~D~~E-----GADilM~~~~~~~VKPal~YLDI---Ir~vk~~~~l---PvaaYqVSGEYa 386 (435)
.....++| |||-|- ||-+ ++.+.....- .++..-.+|+|-
T Consensus 406 a~~~~~eei~~~igadsl~-------------yls~e~l~~a~~~~~~~~~~~~c~~Cf~g~yp 456 (471)
T PRK06781 406 AANHTVEEIREMIGADSLT-------------FLSEDGLVDAIGRPYEGKYGGLCMAYFNGDYP 456 (471)
T ss_pred hcCCCHHHHHHHhCCCEEe-------------ccCHHHHHHHhcCccCCCCCCcccccCCCcCC
Confidence 44444443 999998 7643 4443210001 277888899996
No 465
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=29.58 E-value=3.4e+02 Score=28.36 Aligned_cols=99 Identities=15% Similarity=0.172 Sum_probs=63.1
Q ss_pred HHHHHHHHHHcCCCeEEEeec-----------CCCCCCCcccCcCcCCCCCHHHHHHHHHHHC-CCeEEEeeecccCCCC
Q 013861 159 LVQEVAKARDVGVNSVVLFPK-----------VPDALKSPTGDEAYNDNGLVPRTIWLLKDRY-PDLVIYTDVALDPYSS 226 (435)
Q Consensus 159 l~~~v~~~~~~GI~sv~LFgv-----------i~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~-Pdl~IitDVcLc~YTs 226 (435)
..+-.+.+.+.|...|-|.+- ..+.-+|+.|..--|---++.+.|+.||+++ ||..|..=+. +|..
T Consensus 146 f~~AA~~a~~aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYGGslenR~Rf~~eii~air~~vG~d~~v~vRis--~~~~ 223 (361)
T cd04747 146 FARAAADARRLGFDGIELHGAHGYLIDQFFWAGTNRRADGYGGSLAARSRFAAEVVKAIRAAVGPDFPIILRFS--QWKQ 223 (361)
T ss_pred HHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEEC--cccc
Confidence 455556678899999988632 2334678888877777788889999999998 5777776554 4422
Q ss_pred CCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCC
Q 013861 227 DGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSD 267 (435)
Q Consensus 227 hGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSD 267 (435)
.+. ..+.| .+-+++ .+.+-.+.++|+|+|--|.
T Consensus 224 -~~~--~~~~g-~~~~e~----~~~~~~l~~~gvd~i~vs~ 256 (361)
T cd04747 224 -QDY--TARLA-DTPDEL----EALLAPLVDAGVDIFHCST 256 (361)
T ss_pred -ccc--ccCCC-CCHHHH----HHHHHHHHHcCCCEEEecC
Confidence 111 11112 233444 3333334678999986654
No 466
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=29.45 E-value=3.2e+02 Score=26.54 Aligned_cols=87 Identities=18% Similarity=0.231 Sum_probs=52.1
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCC
Q 013861 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDG 237 (435)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTshGHcGIv~e~g 237 (435)
.+.+.++.+.+.|+..|-|----|... .+....+....+.+.++.+|+.+ ++-|+.-+..
T Consensus 112 ~~~~~a~~~~~~G~d~ielN~~cP~~~---~~~~~~~~~~~~~eiv~~vr~~~-~~pv~vKl~~---------------- 171 (289)
T cd02810 112 DYVELARKIERAGAKALELNLSCPNVG---GGRQLGQDPEAVANLLKAVKAAV-DIPLLVKLSP---------------- 171 (289)
T ss_pred HHHHHHHHHHHhCCCEEEEEcCCCCCC---CCcccccCHHHHHHHHHHHHHcc-CCCEEEEeCC----------------
Confidence 477888888888999988842234321 12223334456777888898876 5445544432
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCeecCCCC
Q 013861 238 VIMNDETVHQLCKQAVSQARAGADVVSPSDM 268 (435)
Q Consensus 238 ~IdND~Tv~~Lak~Avs~A~AGADiVAPSDM 268 (435)
.++ .+.+.+.|-...++|||.|.-+..
T Consensus 172 ~~~----~~~~~~~a~~l~~~Gad~i~~~~~ 198 (289)
T cd02810 172 YFD----LEDIVELAKAAERAGADGLTAINT 198 (289)
T ss_pred CCC----HHHHHHHHHHHHHcCCCEEEEEcc
Confidence 112 222334444557899999986644
No 467
>PRK05269 transaldolase B; Provisional
Probab=29.31 E-value=1.1e+02 Score=31.59 Aligned_cols=22 Identities=36% Similarity=0.311 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHcCCCeecC
Q 013861 244 TVHQLCKQAVSQARAGADVVSP 265 (435)
Q Consensus 244 Tv~~Lak~Avs~A~AGADiVAP 265 (435)
|+-.-..||+.-|+|||++|+|
T Consensus 156 TlvFs~~Qa~~aa~AGa~~ISP 177 (318)
T PRK05269 156 TLLFSFAQARACAEAGVFLISP 177 (318)
T ss_pred eEecCHHHHHHHHHcCCCEEEe
Confidence 3333467999999999999999
No 468
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=29.28 E-value=4.8e+02 Score=26.04 Aligned_cols=89 Identities=25% Similarity=0.379 Sum_probs=60.2
Q ss_pred CCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCch-HHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhh
Q 013861 323 MNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPY-LDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQR 401 (435)
Q Consensus 323 mdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~Y-LDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G~ide~~ 401 (435)
.|++|..|-+++.+. -|||.+=+-|.-.+-=|-+++ .+++..+|..+.+|+=+-- |+. +.
T Consensus 13 aD~~~l~~el~~~~~---agad~iH~DVMDghFVPNiTfGp~~v~~l~~~t~~p~DvHL------MV~--------~p-- 73 (220)
T COG0036 13 ADFARLGEELKALEA---AGADLIHIDVMDGHFVPNITFGPPVVKALRKITDLPLDVHL------MVE--------NP-- 73 (220)
T ss_pred CCHhHHHHHHHHHHH---cCCCEEEEeccCCCcCCCcccCHHHHHHHhhcCCCceEEEE------ecC--------CH--
Confidence 466777777776653 599999888887666666655 7999999999999986642 221 22
Q ss_pred HHHHHHHHHHHhcccEee-----hhcHHHHHHHHhc
Q 013861 402 VMMESLMCLRRAGADIIL-----TYFALQAARCLCG 432 (435)
Q Consensus 402 ~v~Esl~~ikRAGAd~Ii-----TYfA~~~a~~L~~ 432 (435)
...+..|..||||+|- |-...++.+++++
T Consensus 74 --~~~i~~fa~agad~It~H~E~~~~~~r~i~~Ik~ 107 (220)
T COG0036 74 --DRYIEAFAKAGADIITFHAEATEHIHRTIQLIKE 107 (220)
T ss_pred --HHHHHHHHHhCCCEEEEEeccCcCHHHHHHHHHH
Confidence 3455678888999874 2233445556553
No 469
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=29.21 E-value=2e+02 Score=30.83 Aligned_cols=89 Identities=18% Similarity=0.296 Sum_probs=55.7
Q ss_pred CCCHHHHHHHHHhcccccccEEecccCCCcccCCC----chHHHHHHHHhhCCCCeEEEEech-----HH-HHHHHHHHC
Q 013861 325 PANYREALVEAQADESEGADILLFSVLGSQVKPGL----PYLDVIRLLRDKYPLPIAAYQVSG-----EY-SMIKAGGAL 394 (435)
Q Consensus 325 p~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal----~YLDIIr~vk~~~~lPvaaYqVSG-----EY-aMikaAa~~ 394 (435)
..+.+|++.++.... ++||+|= ..=-. .=-+ ++.+++....|+..|--+. || .+++.+++.
T Consensus 8 ~~~~~e~~~~~~~~~-~~~D~vE-------~R~D~~~~~~~~~-~~~l~~~~~~pilT~R~~~~~~~~~~~~~l~~~~~~ 78 (477)
T PRK09310 8 GPSFLEAKQQILRSL-KLVDCIE-------LRVDLLLSLSDLE-LKKLIELAPIPILTWKKHESCSQAAWIDKMQSLAKL 78 (477)
T ss_pred CCCHHHHHHHHHHhc-ccCCEEE-------EEehhhccCCHHH-HHHHHhcCCCceEEeccCccCCHHHHHHHHHHHHHh
Confidence 468889999988888 8899974 21110 0013 4566665578999988655 34 677777777
Q ss_pred C--CCchh----hHHHHHHHHHHHhcccEeehhcH
Q 013861 395 K--MIDEQ----RVMMESLMCLRRAGADIILTYFA 423 (435)
Q Consensus 395 G--~ide~----~~v~Esl~~ikRAGAd~IiTYfA 423 (435)
| ++|-| +-.++.+...+ .|..+|++|+-
T Consensus 79 ~~d~vDiEl~~~~~~~~~l~~~~-~~~kvI~S~Hd 112 (477)
T PRK09310 79 NPNYLDIDKDFPKEALIRIRKLH-PKIKIILSYHT 112 (477)
T ss_pred CCCEEEEEecCCHHHHHHHHHhC-CCCEEEEEcCC
Confidence 6 44443 22333333222 38889999974
No 470
>PRK11517 transcriptional regulatory protein YedW; Provisional
Probab=29.13 E-value=2.6e+02 Score=24.56 Aligned_cols=65 Identities=15% Similarity=0.214 Sum_probs=44.8
Q ss_pred CHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCc
Q 013861 327 NYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMID 398 (435)
Q Consensus 327 N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G~id 398 (435)
|..+++.... .+..|++++. ..-|.+.-+++++.++....+|+....-.........+.+.|..|
T Consensus 32 ~~~~~l~~~~---~~~~dlvi~d----~~~~~~~g~~~~~~l~~~~~~~ii~ls~~~~~~~~~~a~~~Ga~~ 96 (223)
T PRK11517 32 DGRDGLYLAL---KDDYALIILD----IMLPGMDGWQILQTLRTAKQTPVICLTARDSVDDRVRGLDSGAND 96 (223)
T ss_pred CHHHHHHHHh---cCCCCEEEEE----CCCCCCCHHHHHHHHHcCCCCCEEEEECCCCHHHHHHHHhcCCCE
Confidence 5666666543 3568999821 124667778999999987789998876555566666777777654
No 471
>TIGR00874 talAB transaldolase. This family includes the majority of known and predicted transaldolase sequences, including E. coli TalA and TalB. It excluded two other families. The first includes E. coli transaldolase-like protein TalC. The second family includes the putative transaldolases of Helicobacter pylori and Mycobacterium tuberculosis.
Probab=29.07 E-value=73 Score=32.97 Aligned_cols=23 Identities=30% Similarity=0.265 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHcCCCeecC
Q 013861 243 ETVHQLCKQAVSQARAGADVVSP 265 (435)
Q Consensus 243 ~Tv~~Lak~Avs~A~AGADiVAP 265 (435)
.|+=.-..||+.-|+|||++|+|
T Consensus 153 ~TliFS~~Qa~aaa~AGa~~ISP 175 (317)
T TIGR00874 153 LTLLFSFVQAIACAEAKVTLISP 175 (317)
T ss_pred eeeecCHHHHHHHHHcCCCEEEe
Confidence 34444467999999999999999
No 472
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=29.05 E-value=1.1e+02 Score=29.93 Aligned_cols=45 Identities=16% Similarity=0.229 Sum_probs=33.4
Q ss_pred HHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEeeh
Q 013861 362 LDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILT 420 (435)
Q Consensus 362 LDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G~ide~~~v~Esl~~ikRAGAd~IiT 420 (435)
+.+++...+..++|+--.+.+|+| ++-+-+.+..+++.|++.|++
T Consensus 47 ~~~~~~qA~algiPl~~~~~~~~~--------------e~~~~~l~~~l~~~gv~~vv~ 91 (222)
T TIGR00289 47 LHLTDLVAEAVGIPLIKLYTSGEE--------------EKEVEDLAGQLGELDVEALCI 91 (222)
T ss_pred HHHHHHHHHHcCCCeEEEEcCCch--------------hHHHHHHHHHHHHcCCCEEEE
Confidence 678888889999999888999876 223333334457779998876
No 473
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=28.99 E-value=90 Score=31.50 Aligned_cols=131 Identities=13% Similarity=0.156 Sum_probs=77.1
Q ss_pred cHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCCCceeechhhhhcccccccchhhhcCCCC-CCCcc
Q 013861 241 NDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPR-FGDKK 319 (435)
Q Consensus 241 ND~Tv~~Lak~Avs~A~AGADiVAPSDMMDGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRdA~~Sap~-fgDRk 319 (435)
.-+-++.+++-|+.-.=+.-|-..-|||.- -..+| + .|||-+.+++..... +.+-+
T Consensus 127 t~Pg~r~~~k~Av~~GGg~~HR~gL~d~vl----------ikdnH--i-----------~~~g~i~~~v~~~k~~~p~~~ 183 (273)
T PRK05848 127 TRPLLRIFEKYSVRNGGASNHRLGLDDCLM----------LKDTH--L-----------KHIKDLKEFIQHARKNIPFTA 183 (273)
T ss_pred CCcchhHHHHHHHHhCCCccccCCchhhhC----------cCHHH--H-----------HHHCcHHHHHHHHHHhCCCCc
Confidence 345567788888876555556666666631 11111 1 134666666655433 22224
Q ss_pred ccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhh-CCCCeEEEEechHHHHHHHHHHCCCCc
Q 013861 320 TYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDK-YPLPIAAYQVSGEYSMIKAGGALKMID 398 (435)
Q Consensus 320 tYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~-~~lPvaaYqVSGEYaMikaAa~~G~id 398 (435)
--..+..|.+||+..++ -|||+|| .- .+.+=++-+.++-. ...|=..-.+| |-|+
T Consensus 184 ~I~VEv~tleea~~A~~----~GaDiI~-------LD-n~~~e~l~~~v~~~~~~~~~~~ieAs------------GgIt 239 (273)
T PRK05848 184 KIEIECESLEEAKNAMN----AGADIVM-------CD-NMSVEEIKEVVAYRNANYPHVLLEAS------------GNIT 239 (273)
T ss_pred eEEEEeCCHHHHHHHHH----cCCCEEE-------EC-CCCHHHHHHHHHHhhccCCCeEEEEE------------CCCC
Confidence 46778899999888764 6999999 42 23455555555531 22243334444 4466
Q ss_pred hhhHHHHHHHHHHHhcccEeehhcH
Q 013861 399 EQRVMMESLMCLRRAGADIILTYFA 423 (435)
Q Consensus 399 e~~~v~Esl~~ikRAGAd~IiTYfA 423 (435)
++ .+..+...|+|+|.+-..
T Consensus 240 ~~-----ni~~ya~~GvD~IsvG~l 259 (273)
T PRK05848 240 LE-----NINAYAKSGVDAISSGSL 259 (273)
T ss_pred HH-----HHHHHHHcCCCEEEeChh
Confidence 54 456778889999987544
No 474
>cd06359 PBP1_Nba_like Type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway. This group includes the type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway; their substrate specificities are not well characterized.
Probab=28.95 E-value=1.8e+02 Score=28.19 Aligned_cols=104 Identities=13% Similarity=0.229 Sum_probs=59.8
Q ss_pred HHHHHCCCCCceeechhhhhcccccccchhhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccC
Q 013861 278 AALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKP 357 (435)
Q Consensus 278 ~aLD~~Gf~~v~IMSYSaKyASafYGPFRdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKP 357 (435)
+.+.+.|.+++.|+.--.-|...+.--|+++++ ....+...|...-.+....+.++. +.++|+|++. =+
T Consensus 127 ~~~~~~g~~~vail~~~~~~g~~~~~~~~~~~~--~~v~~~~~~~~~~~d~~~~i~~l~---~~~pd~v~~~------~~ 195 (333)
T cd06359 127 KYAQDKGYKRVFLIAPNYQAGKDALAGFKRTFK--GEVVGEVYTKLGQLDFSAELAQIR---AAKPDAVFVF------LP 195 (333)
T ss_pred HHHHHhCCCeEEEEecCchhhHHHHHHHHHHhC--ceeeeeecCCCCCcchHHHHHHHH---hCCCCEEEEE------cc
Confidence 344455677777774333344455555665553 112234455555455665555543 6899999921 13
Q ss_pred CCchHHHHHHHHhh-C--CCCeEEEEechHHHHHHHHH
Q 013861 358 GLPYLDVIRLLRDK-Y--PLPIAAYQVSGEYSMIKAGG 392 (435)
Q Consensus 358 al~YLDIIr~vk~~-~--~lPvaaYqVSGEYaMikaAa 392 (435)
+.....+++.+++. . ++|+....-.++...++.+.
T Consensus 196 ~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~g 233 (333)
T cd06359 196 GGMGVNFVKQYRQAGLKKDIPLYSPGFSDEEDTLPAVG 233 (333)
T ss_pred CccHHHHHHHHHHcCcccCCeeeccCcccCHHHHHhcc
Confidence 33467888888875 3 56766555556666666643
No 475
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=28.82 E-value=3.5e+02 Score=27.26 Aligned_cols=112 Identities=13% Similarity=0.136 Sum_probs=64.4
Q ss_pred eechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCC-CeEEEeeecccCCCCCCcc
Q 013861 152 RLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYP-DLVIYTDVALDPYSSDGHD 230 (435)
Q Consensus 152 r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~P-dl~IitDVcLc~YTshGHc 230 (435)
++..+ .+.+.++.+++.|++.+++.|.. |+-..=.+-=-.+-++...+... ++-||+=|
T Consensus 25 ~iD~~-~l~~lv~~li~~Gv~Gi~v~Gst--------GE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv----------- 84 (309)
T cd00952 25 TVDLD-ETARLVERLIAAGVDGILTMGTF--------GECATLTWEEKQAFVATVVETVAGRVPVFVGA----------- 84 (309)
T ss_pred CcCHH-HHHHHHHHHHHcCCCEEEECccc--------ccchhCCHHHHHHHHHHHHHHhCCCCCEEEEe-----------
Confidence 44554 58899999999999999999963 32222111112234444444433 24444311
Q ss_pred eeecCCCccccHHHHHHHHHHHHHHHHcCCCee---cCCCC---CCchHHHHHHHHHHCCCCCceeechhh
Q 013861 231 GIVREDGVIMNDETVHQLCKQAVSQARAGADVV---SPSDM---MDGRVGAIRAALDAEGFQHVSIMSYTA 295 (435)
Q Consensus 231 GIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiV---APSDM---MDGrVgAIR~aLD~~Gf~~v~IMSYSa 295 (435)
- ..+.+...++|-..+++|||.| .|.-. -++-+..-|+..+..+ +++||=|-.
T Consensus 85 --~--------~~~t~~ai~~a~~A~~~Gad~vlv~~P~y~~~~~~~l~~yf~~va~a~~--~lPv~iYn~ 143 (309)
T cd00952 85 --T--------TLNTRDTIARTRALLDLGADGTMLGRPMWLPLDVDTAVQFYRDVAEAVP--EMAIAIYAN 143 (309)
T ss_pred --c--------cCCHHHHHHHHHHHHHhCCCEEEECCCcCCCCCHHHHHHHHHHHHHhCC--CCcEEEEcC
Confidence 1 1122344556666778899943 34211 1677777777777642 589998843
No 476
>TIGR00035 asp_race aspartate racemase.
Probab=28.81 E-value=1.9e+02 Score=27.52 Aligned_cols=47 Identities=13% Similarity=0.039 Sum_probs=39.7
Q ss_pred CCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEee
Q 013861 373 PLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIIL 419 (435)
Q Consensus 373 ~lPvaaYqVSGEYaMikaAa~~G~ide~~~v~Esl~~ikRAGAd~Ii 419 (435)
.+|+..++-.--....++-...+|-+....+.++...+.++|||.|+
T Consensus 34 ~~~~i~~~~~~~~dr~~~~~~~~~~~~~~~l~~~~~~L~~~g~d~iv 80 (229)
T TIGR00035 34 HPAEVLFNNPNIPDRTAYILGRGEDRPRPILIDIAVKLENAGADFII 80 (229)
T ss_pred CCceeeeeCCCHHHHHHHHhcCCcchHHHHHHHHHHHHHHcCCCEEE
Confidence 48888888886666767666688888889999999999999999986
No 477
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=28.80 E-value=6.8e+02 Score=26.02 Aligned_cols=118 Identities=17% Similarity=0.329 Sum_probs=75.7
Q ss_pred eeEEEeeCCCCcccCCCCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCC---CCc------ccCcCcCCCCCHHH
Q 013861 131 YPLFIHEGEEDTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDAL---KSP------TGDEAYNDNGLVPR 201 (435)
Q Consensus 131 ~PlFV~eg~~~~~I~sMPGv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~---Kd~------~Gs~A~~~~g~v~r 201 (435)
.|+||.=.+ .+. ++.+.++.+.+.|...|+++=.+-+.. +.. .+.-.+.-.-+-++
T Consensus 162 ~Pv~vKl~P--------------~~~-di~~iA~~~~~~g~Dgl~~~NT~~~~~~id~~~~~~~~~~~~GGLSG~~ikp~ 226 (310)
T COG0167 162 VPVFVKLAP--------------NIT-DIDEIAKAAEEAGADGLIAINTTKSGMKIDLETKKPVLANETGGLSGPPLKPI 226 (310)
T ss_pred CceEEEeCC--------------CHH-HHHHHHHHHHHcCCcEEEEEeeccccccccccccccccCcCCCCcCcccchHH
Confidence 899997543 234 588899999999999999987443211 111 23344455556778
Q ss_pred HHHHHHHHC----CCeEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecC-CCCC-Cc----
Q 013861 202 TIWLLKDRY----PDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSP-SDMM-DG---- 271 (435)
Q Consensus 202 aIr~iK~~~----Pdl~IitDVcLc~YTshGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAP-SDMM-DG---- 271 (435)
|++.|++-+ +++-||. =-||. + ++-|+.+-.|||++|-= |.+| +|
T Consensus 227 al~~v~~l~~~~~~~ipIIG-----------vGGI~-------s-------~~DA~E~i~aGA~~vQv~Tal~~~Gp~i~ 281 (310)
T COG0167 227 ALRVVAELYKRLGGDIPIIG-----------VGGIE-------T-------GEDALEFILAGASAVQVGTALIYKGPGIV 281 (310)
T ss_pred HHHHHHHHHHhcCCCCcEEE-----------ecCcC-------c-------HHHHHHHHHcCCchheeeeeeeeeCchHH
Confidence 888887544 3455552 22333 2 45688899999998742 2222 22
Q ss_pred --hHHHHHHHHHHCCCCCc
Q 013861 272 --RVGAIRAALDAEGFQHV 288 (435)
Q Consensus 272 --rVgAIR~aLD~~Gf~~v 288 (435)
-+..|.+.|+++||+.+
T Consensus 282 ~~I~~~l~~~l~~~g~~si 300 (310)
T COG0167 282 KEIIKGLARWLEEKGFESI 300 (310)
T ss_pred HHHHHHHHHHHHHcCCCCH
Confidence 35567888999999764
No 478
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional
Probab=28.76 E-value=4.1e+02 Score=23.46 Aligned_cols=66 Identities=21% Similarity=0.236 Sum_probs=44.1
Q ss_pred CCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCc
Q 013861 326 ANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMID 398 (435)
Q Consensus 326 ~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G~id 398 (435)
.+..+++.... .+..|+++... --|.+.-+++++.+++...+|+....-..+-.....+.+.|..|
T Consensus 32 ~~~~~~~~~~~---~~~~dlvild~----~l~~~~g~~~~~~lr~~~~~pvi~lt~~~~~~~~~~~~~~ga~~ 97 (225)
T PRK10529 32 ETLQRGLLEAA---TRKPDLIILDL----GLPDGDGIEFIRDLRQWSAIPVIVLSARSEESDKIAALDAGADD 97 (225)
T ss_pred CCHHHHHHHHh---cCCCCEEEEeC----CCCCCCHHHHHHHHHcCCCCCEEEEECCCCHHHHHHHHHcCCCE
Confidence 35566665442 24579888211 23677889999999987789998875545555566677777654
No 479
>cd06314 PBP1_tmGBP Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs. Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs from other bacteria. They are a member of the type I periplasmic binding protein superfamily which consists of two domains connected by a three-stranded hinge. TmGBP is specific for glucose and its binding pocket is buried at the interface of the two domains. TmGBP also exhibits high thermostability and the highest structural similarity to E. coli glucose binding protein (ecGBP).
Probab=28.65 E-value=4.7e+02 Score=24.12 Aligned_cols=103 Identities=15% Similarity=0.128 Sum_probs=59.1
Q ss_pred HHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCc
Q 013861 159 LVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGV 238 (435)
Q Consensus 159 l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTshGHcGIv~e~g~ 238 (435)
..+.++.+...++..+++++.-++ .....++.+++..| +|..|-. +.++.++.-+.
T Consensus 44 ~~~~i~~l~~~~vDgiIi~~~~~~---------------~~~~~l~~~~~~ip--vV~~~~~---~~~~~~~~~V~---- 99 (271)
T cd06314 44 QLRMLEDLIAEGVDGIAISPIDPK---------------AVIPALNKAAAGIK--LITTDSD---APDSGRYVYIG---- 99 (271)
T ss_pred HHHHHHHHHhcCCCEEEEecCChh---------------HhHHHHHHHhcCCC--EEEecCC---CCccceeEEEc----
Confidence 567778888999999999874110 11245555544445 4444533 22334444442
Q ss_pred cccHHHHHHHHHHHHHHHHcCCCeec---CCCC--CCchHHHHHHHHHHCCC
Q 013861 239 IMNDETVHQLCKQAVSQARAGADVVS---PSDM--MDGRVGAIRAALDAEGF 285 (435)
Q Consensus 239 IdND~Tv~~Lak~Avs~A~AGADiVA---PSDM--MDGrVgAIR~aLD~~Gf 285 (435)
.||...-+.+++..+..-..|.+++. +... ..-|...+|++|.+.|.
T Consensus 100 ~D~~~~g~~a~~~l~~~~~~g~~~~~~~~~~~~~~~~~R~~gf~~~~~~~~~ 151 (271)
T cd06314 100 TDNYAAGRTAGEIMKKALPGGGKVAIFVGSLGADNAKERIQGIKDAIKDSKI 151 (271)
T ss_pred cChHHHHHHHHHHHHHHcCCCCEEEEEecCCCCCCHHHHHHHHHHHHhcCCc
Confidence 46666666555555443334666643 2221 23588889999988875
No 480
>PLN02417 dihydrodipicolinate synthase
Probab=28.58 E-value=1.1e+02 Score=30.20 Aligned_cols=107 Identities=19% Similarity=0.206 Sum_probs=63.7
Q ss_pred cCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCC--------CchHHHHHHHHHHCCCCCceeechhhhhcccccccc
Q 013861 234 REDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMM--------DGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPF 305 (435)
Q Consensus 234 ~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMM--------DGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPF 305 (435)
++||.|| -+.++.+++. +.+.|+|-|.+.+.. +=|...++.+.+..+ .+++|+.
T Consensus 14 ~~~g~iD-~~~~~~~i~~---l~~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~-~~~pvi~------------- 75 (280)
T PLN02417 14 LPDGRFD-LEAYDSLVNM---QIENGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFG-GKIKVIG------------- 75 (280)
T ss_pred CCCCCcC-HHHHHHHHHH---HHHcCCCEEEECccCcchhhCCHHHHHHHHHHHHHHhC-CCCcEEE-------------
Confidence 3567776 4445555443 455899988776543 234444444444432 2344442
Q ss_pred hhhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCch-------HHHHHHHHhhCCCCeEE
Q 013861 306 REALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPY-------LDVIRLLRDKYPLPIAA 378 (435)
Q Consensus 306 RdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~Y-------LDIIr~vk~~~~lPvaa 378 (435)
+.--.|.+|+++.++.=.+-|||.+| |=|-..| .+-.+.+.+.. |+..
T Consensus 76 ----------------gv~~~~t~~~i~~a~~a~~~Gadav~-------~~~P~y~~~~~~~i~~~f~~va~~~--pi~l 130 (280)
T PLN02417 76 ----------------NTGSNSTREAIHATEQGFAVGMHAAL-------HINPYYGKTSQEGLIKHFETVLDMG--PTII 130 (280)
T ss_pred ----------------ECCCccHHHHHHHHHHHHHcCCCEEE-------EcCCccCCCCHHHHHHHHHHHHhhC--CEEE
Confidence 12234788999988888889999999 6654322 22333444544 9999
Q ss_pred EEech
Q 013861 379 YQVSG 383 (435)
Q Consensus 379 YqVSG 383 (435)
||.-+
T Consensus 131 Yn~P~ 135 (280)
T PLN02417 131 YNVPG 135 (280)
T ss_pred EEChh
Confidence 98754
No 481
>COG1794 RacX Aspartate racemase [Cell envelope biogenesis, outer membrane]
Probab=28.50 E-value=85 Score=31.48 Aligned_cols=61 Identities=30% Similarity=0.449 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHcCCCeec-CCCCCCchHHHHH---------------HHHHHCCCCCceeechhhhhccccc
Q 013861 242 DETVHQLCKQAVSQARAGADVVS-PSDMMDGRVGAIR---------------AALDAEGFQHVSIMSYTAKYASSFY 302 (435)
Q Consensus 242 D~Tv~~Lak~Avs~A~AGADiVA-PSDMMDGrVgAIR---------------~aLD~~Gf~~v~IMSYSaKyASafY 302 (435)
|+.=+.|...|..+.++|||+++ |..-|-=-.-.|+ +++...|+++|+++.=-.--.+.||
T Consensus 58 ~~~~~~L~~~a~~Le~~GAd~i~l~~NT~H~~~d~iq~~~~iPllhIidaTa~~ik~~g~kkvgLLgT~~Tm~~~fY 134 (230)
T COG1794 58 DEAGEILIDAAKKLERAGADFIVLPTNTMHKVADDIQKAVGIPLLHIIDATAKAIKAAGAKKVGLLGTRFTMEQGFY 134 (230)
T ss_pred ccHHHHHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHhcCCCeehHHHHHHHHHHhcCCceeEEeeccchHHhHHH
No 482
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=28.47 E-value=1.3e+02 Score=29.72 Aligned_cols=21 Identities=14% Similarity=0.325 Sum_probs=14.4
Q ss_pred HHHHHHcCCCeecCCCCCCch
Q 013861 252 AVSQARAGADVVSPSDMMDGR 272 (435)
Q Consensus 252 Avs~A~AGADiVAPSDMMDGr 272 (435)
++.-.+|||++|--|-.-=|+
T Consensus 201 ~laA~~aGa~~vd~s~~G~G~ 221 (266)
T cd07944 201 TLEAIELGVEIIDATVYGMGR 221 (266)
T ss_pred HHHHHHcCCCEEEEecccCCC
Confidence 445568999998776555554
No 483
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=28.40 E-value=87 Score=30.90 Aligned_cols=47 Identities=23% Similarity=0.258 Sum_probs=33.3
Q ss_pred CCHHHHHHHHHhcccccccEEecccCCCcccCCCchH-----HHH---HHHHhhCCCCeEEEEe
Q 013861 326 ANYREALVEAQADESEGADILLFSVLGSQVKPGLPYL-----DVI---RLLRDKYPLPIAAYQV 381 (435)
Q Consensus 326 ~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YL-----DII---r~vk~~~~lPvaaYqV 381 (435)
.|.+|++..++.=.+-|||.+| |=|-..|. .|+ +.+.+ ++|+..||.
T Consensus 75 ~~~~~ai~~a~~a~~~Gad~v~-------v~~P~y~~~~~~~~i~~yf~~v~~--~lpv~iYn~ 129 (279)
T cd00953 75 LNLEESIELARAAKSFGIYAIA-------SLPPYYFPGIPEEWLIKYFTDISS--PYPTFIYNY 129 (279)
T ss_pred CCHHHHHHHHHHHHHcCCCEEE-------EeCCcCCCCCCHHHHHHHHHHHHh--cCCEEEEeC
Confidence 4678999988888889999999 64432221 233 34444 899999985
No 484
>PLN02389 biotin synthase
Probab=28.34 E-value=1.5e+02 Score=31.11 Aligned_cols=77 Identities=17% Similarity=0.239 Sum_probs=44.0
Q ss_pred cccCCCCCCHHHHHHHHHhcccccccEEecccCC-CcccCC---CchHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHC
Q 013861 319 KTYQMNPANYREALVEAQADESEGADILLFSVLG-SQVKPG---LPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGAL 394 (435)
Q Consensus 319 ktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~-~~VKPa---l~YLDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~ 394 (435)
+.|.|++. |.+.++..-.+.|+.-+.+..-| .+..|- -.|+|+|+.+|+ .++++. ..+
T Consensus 112 ~~~~Ls~E---eIl~~a~~~~~~G~~~~~ivts~rg~~~e~~~~e~i~eiir~ik~-~~l~i~--------------~s~ 173 (379)
T PLN02389 112 AQKLMSKD---DVLEAAKRAKEAGSTRFCMGAAWRDTVGRKTNFNQILEYVKEIRG-MGMEVC--------------CTL 173 (379)
T ss_pred ccccCCHH---HHHHHHHHHHHcCCCEEEEEecccCCCCChhHHHHHHHHHHHHhc-CCcEEE--------------ECC
Confidence 34457664 44444444445688765421111 123322 356889999984 455553 346
Q ss_pred CCCchhhHHHHHHHHHHHhcccEe
Q 013861 395 KMIDEQRVMMESLMCLRRAGADII 418 (435)
Q Consensus 395 G~ide~~~v~Esl~~ikRAGAd~I 418 (435)
|.+++ |.+..+|.||.|.+
T Consensus 174 G~l~~-----E~l~~LkeAGld~~ 192 (379)
T PLN02389 174 GMLEK-----EQAAQLKEAGLTAY 192 (379)
T ss_pred CCCCH-----HHHHHHHHcCCCEE
Confidence 76654 56677888888865
No 485
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=28.29 E-value=1.4e+02 Score=31.64 Aligned_cols=62 Identities=27% Similarity=0.343 Sum_probs=42.4
Q ss_pred HHHHHHHhcccccccEEecccCCCcccCC----CchHHHHHHHHhhC-CCCeEEEEechHHHHHHHHHHCCCCchhhHHH
Q 013861 330 EALVEAQADESEGADILLFSVLGSQVKPG----LPYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMIDEQRVMM 404 (435)
Q Consensus 330 EAlre~~~D~~EGADilM~~~~~~~VKPa----l~YLDIIr~vk~~~-~lPvaaYqVSGEYaMikaAa~~G~ide~~~v~ 404 (435)
+.+.++..=++.|+|+|. |--+ ..-+|.|+.+|+++ ++||.+=+| .+ .
T Consensus 224 ~~~~r~~~L~~aG~d~I~-------vd~a~g~~~~~~~~i~~i~~~~~~~~vi~G~v---------------~t-----~ 276 (450)
T TIGR01302 224 FDKERAEALVKAGVDVIV-------IDSSHGHSIYVIDSIKEIKKTYPDLDIIAGNV---------------AT-----A 276 (450)
T ss_pred hHHHHHHHHHHhCCCEEE-------EECCCCcHhHHHHHHHHHHHhCCCCCEEEEeC---------------CC-----H
Confidence 445555544567999999 4442 23588999999997 699998333 23 2
Q ss_pred HHHHHHHHhcccEe
Q 013861 405 ESLMCLRRAGADII 418 (435)
Q Consensus 405 Esl~~ikRAGAd~I 418 (435)
|....+..||||.|
T Consensus 277 ~~a~~l~~aGad~i 290 (450)
T TIGR01302 277 EQAKALIDAGADGL 290 (450)
T ss_pred HHHHHHHHhCCCEE
Confidence 33445667899999
No 486
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=28.25 E-value=1.9e+02 Score=29.71 Aligned_cols=81 Identities=17% Similarity=0.236 Sum_probs=44.6
Q ss_pred eechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHC-CCeEEEeeecccCCCCCCcc
Q 013861 152 RLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRY-PDLVIYTDVALDPYSSDGHD 230 (435)
Q Consensus 152 r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~-Pdl~IitDVcLc~YTshGHc 230 (435)
+++.+ .+++.++.+.+.|...|.| +|..|. ..|+. +.+-++.||+.+ |++- ..-|+|+
T Consensus 140 ~~~~e-~l~~~a~~~~~~Ga~~i~i--------~DT~G~--~~P~~-v~~~v~~l~~~l~~~i~---------ig~H~Hn 198 (337)
T PRK08195 140 MAPPE-KLAEQAKLMESYGAQCVYV--------VDSAGA--LLPED-VRDRVRALRAALKPDTQ---------VGFHGHN 198 (337)
T ss_pred CCCHH-HHHHHHHHHHhCCCCEEEe--------CCCCCC--CCHHH-HHHHHHHHHHhcCCCCe---------EEEEeCC
Confidence 55554 4777777777777776544 233342 22322 456677777777 4543 2347775
Q ss_pred eeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCC
Q 013861 231 GIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPS 266 (435)
Q Consensus 231 GIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPS 266 (435)
-.= +. ..-++.-.++||++|==|
T Consensus 199 nlG-----------la--~ANslaAi~aGa~~iD~S 221 (337)
T PRK08195 199 NLG-----------LG--VANSLAAVEAGATRIDGS 221 (337)
T ss_pred Ccc-----------hH--HHHHHHHHHhCCCEEEec
Confidence 331 11 122444567999966433
No 487
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=28.16 E-value=5.7e+02 Score=24.91 Aligned_cols=114 Identities=19% Similarity=0.254 Sum_probs=66.4
Q ss_pred hHHHHHHHHHHcCCCeEEEe-ecCCCCCCCcccCcC-cCCCCCHHHHHHHHHHHC-CCeEEEeeecccCCCCCCcceeec
Q 013861 158 GLVQEVAKARDVGVNSVVLF-PKVPDALKSPTGDEA-YNDNGLVPRTIWLLKDRY-PDLVIYTDVALDPYSSDGHDGIVR 234 (435)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LF-gvi~~~~Kd~~Gs~A-~~~~g~v~raIr~iK~~~-Pdl~IitDVcLc~YTshGHcGIv~ 234 (435)
.+.+.+..+.++||+.|++. |- + .+....-++ -..+.-....|+.+|+.+ +++.| ..--|- .||-..-
T Consensus 74 ~l~~~L~~~~~~Gi~~iL~l~GD-~--~~~~~~~~~~~~~~~~a~~Li~~i~~~~~~~~~i----gva~yP-e~hp~~~- 144 (274)
T cd00537 74 ELQSILLGAHALGIRNILALRGD-P--PKGGDQPGAKPVGFVYAVDLVELIRKENGGGFSI----GVAAYP-EGHPEAP- 144 (274)
T ss_pred HHHHHHHHHHHCCCCeEEEeCCC-C--CCCCCCCCCCCCCCCCHHHHHHHHHHhcCCCCcc----ccccCC-CcCCCCC-
Confidence 58889999999999999997 42 2 122110011 112233456777777765 33211 111121 4444322
Q ss_pred CCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC-chHHHHHHHHHHCCCCCcee
Q 013861 235 EDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMD-GRVGAIRAALDAEGFQHVSI 290 (435)
Q Consensus 235 e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMMD-GrVgAIR~aLD~~Gf~~v~I 290 (435)
+-++-++.|.+ -.+||||.+=.-=--| ..+....+.+.+.|. +++|
T Consensus 145 -----~~~~~~~~L~~----Ki~aGA~f~iTQ~~fd~~~~~~~~~~~~~~gi-~vPI 191 (274)
T cd00537 145 -----SLEEDIKRLKR----KVDAGADFIITQLFFDNDAFLRFVDRCRAAGI-TVPI 191 (274)
T ss_pred -----CHHHHHHHHHH----HHHCCCCEEeecccccHHHHHHHHHHHHHcCC-CCCE
Confidence 12344444443 3467999998888888 777888888888886 4443
No 488
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=28.08 E-value=2.3e+02 Score=29.52 Aligned_cols=138 Identities=23% Similarity=0.258 Sum_probs=83.8
Q ss_pred HHcCCCeecC-----CC-------CCCchHHHHHHHHHHCCCCCce-eechhhhhcccccccchhhhcCCCCCCCccccC
Q 013861 256 ARAGADVVSP-----SD-------MMDGRVGAIRAALDAEGFQHVS-IMSYTAKYASSFYGPFREALDSNPRFGDKKTYQ 322 (435)
Q Consensus 256 A~AGADiVAP-----SD-------MMDGrVgAIR~aLD~~Gf~~v~-IMSYSaKyASafYGPFRdA~~Sap~fgDRktYQ 322 (435)
.+.|||.|.= +| .|--.|+.|-+..++.|..-+. +++|..+-. .... ..|.
T Consensus 116 ~~~GAdAVk~lv~~~~d~~~~~~~~~~~~l~rv~~ec~~~giPlllE~l~y~~~~~----------~~~~------~~~a 179 (340)
T PRK12858 116 KEAGADAVKLLLYYRPDEDDAINDRKHAFVERVGAECRANDIPFFLEPLTYDGKGS----------DKKA------EEFA 179 (340)
T ss_pred HHcCCCEEEEEEEeCCCcchHHHHHHHHHHHHHHHHHHHcCCceEEEEeccCCCcc----------cccc------cccc
Confidence 5789999863 22 5666788888899999873322 237754211 1111 1121
Q ss_pred -CCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCc-------------h-----HHHHHHHHhhCCCCeEEEEech
Q 013861 323 -MNPANYREALVEAQADESEGADILLFSVLGSQVKPGLP-------------Y-----LDVIRLLRDKYPLPIAAYQVSG 383 (435)
Q Consensus 323 -mdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~-------------Y-----LDIIr~vk~~~~lPvaaYqVSG 383 (435)
.+|....+|+|+...+ +=|||++= |+.-.. | .+-.+++.+..++|+..- |
T Consensus 180 ~~~p~~V~~a~r~~~~~-elGaDvlK-------ve~p~~~~~veg~~~~~~~~~~~~~~~~f~~~~~a~~~P~vvl--s- 248 (340)
T PRK12858 180 KVKPEKVIKTMEEFSKP-RYGVDVLK-------VEVPVDMKFVEGFDGFEEAYTQEEAFKLFREQSDATDLPFIFL--S- 248 (340)
T ss_pred ccCHHHHHHHHHHHhhh-ccCCeEEE-------eeCCCCcccccccccccccccHHHHHHHHHHHHhhCCCCEEEE--C-
Confidence 3466677777766531 24999998 654311 1 256777777888998641 2
Q ss_pred HHHHHHHHHHCCCCchhhHHHHHHHHHHHhcc-------------cEeehhcHHH---HHHHHhc
Q 013861 384 EYSMIKAGGALKMIDEQRVMMESLMCLRRAGA-------------DIILTYFALQ---AARCLCG 432 (435)
Q Consensus 384 EYaMikaAa~~G~ide~~~v~Esl~~ikRAGA-------------d~IiTYfA~~---~a~~L~~ 432 (435)
.|. +. +.++|.+....+||| +.|-.|..++ ..+||+.
T Consensus 249 ----------gG~-~~-~~f~~~l~~A~~aGa~f~Gvl~GRniwq~~v~~~~~~~~~~~~~~l~~ 301 (340)
T PRK12858 249 ----------AGV-SP-ELFRRTLEFACEAGADFSGVLCGRATWQDGIEPYAAEGEEARRAWLNT 301 (340)
T ss_pred ----------CCC-CH-HHHHHHHHHHHHcCCCccchhhhHHHHhhhhccccCCCHHHHHHHHHH
Confidence 343 44 458999999999999 4444554433 4468864
No 489
>PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=28.08 E-value=3.6e+02 Score=28.77 Aligned_cols=46 Identities=20% Similarity=0.264 Sum_probs=33.3
Q ss_pred EEEeeCCC-C---cccCCCCCceee-chhhhHHHHHHHHHHcCCCeEEEeec
Q 013861 133 LFIHEGEE-D---TPIGAMPGCYRL-GWRHGLVQEVAKARDVGVNSVVLFPK 179 (435)
Q Consensus 133 lFV~eg~~-~---~~I~sMPGv~r~-s~~~~l~~~v~~~~~~GI~sv~LFgv 179 (435)
|-|.+|=. . =-|+.+-|-+|. +++ .+++|++.+.+.|++.|.|.+.
T Consensus 158 l~isrGC~~~CsFC~ip~~rG~~rsr~~e-~Iv~Ei~~l~~~G~kei~l~~~ 208 (449)
T PRK14332 158 VTIMRGCNNFCTFCVVPYTRGRERSRDPK-SIVREIQDLQEKGIRQVTLLGQ 208 (449)
T ss_pred EEecCCcCCCCCCCCcccccCCcccCCHH-HHHHHHHHHHHCCCeEEEEecc
Confidence 44566632 1 245556666666 665 6999999999999999999874
No 490
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=28.07 E-value=63 Score=37.12 Aligned_cols=45 Identities=20% Similarity=0.347 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHcCCCeec--CCCCCC-chHHHHHHHHHHCCCCCceeec
Q 013861 247 QLCKQAVSQARAGADVVS--PSDMMD-GRVGAIRAALDAEGFQHVSIMS 292 (435)
Q Consensus 247 ~Lak~Avs~A~AGADiVA--PSDMMD-GrVgAIR~aLD~~Gf~~v~IMS 292 (435)
.-.+|....++||||+|= =-+|=| --+..||+.|.+.|+ ++++++
T Consensus 111 atv~Qi~~l~~aGceiVRvtv~~~~~A~al~~I~~~L~~~g~-~iPLVA 158 (733)
T PLN02925 111 ATVDQVMRIADKGADIVRITVQGKKEADACFEIKNTLVQKGY-NIPLVA 158 (733)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCHHHHHhHHHHHHHHhhcCC-CCCEEE
Confidence 344567788999999982 223333 457889999999997 699986
No 491
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=28.05 E-value=1.4e+02 Score=29.04 Aligned_cols=169 Identities=19% Similarity=0.165 Sum_probs=92.8
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCC
Q 013861 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDG 237 (435)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTshGHcGIv~e~g 237 (435)
+.++.++.+.+.|++.+.++-. .. +. ...+.-...|+.|+++. ++-|+ + +|
T Consensus 31 dp~~~a~~~~~~G~~~l~v~Dl-~~---~~------~~~~~n~~~i~~i~~~~-~~pv~----------------~--~G 81 (254)
T TIGR00735 31 DPVELAQRYDEEGADELVFLDI-TA---SS------EGRTTMIDVVERTAETV-FIPLT----------------V--GG 81 (254)
T ss_pred CHHHHHHHHHHcCCCEEEEEcC-Cc---cc------ccChhhHHHHHHHHHhc-CCCEE----------------E--EC
Confidence 3788899999999999999874 21 11 12234566778887764 22221 1 35
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCCCceeechhhhhcccccccc------hhhhcC
Q 013861 238 VIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPF------REALDS 311 (435)
Q Consensus 238 ~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMMDGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPF------RdA~~S 311 (435)
-|.+.+.++.+.+ +|||.|-=.-..=.....+++..+.-|-++ .+.|=-.| -|++ +=+..
T Consensus 82 Gi~s~~d~~~~~~-------~Ga~~vivgt~~~~~p~~~~~~~~~~~~~~-iv~slD~~-----~g~~~~~~~~~v~i~- 147 (254)
T TIGR00735 82 GIKSIEDVDKLLR-------AGADKVSINTAAVKNPELIYELADRFGSQC-IVVAIDAK-----RVYVNSYCWYEVYIY- 147 (254)
T ss_pred CCCCHHHHHHHHH-------cCCCEEEEChhHhhChHHHHHHHHHcCCCC-EEEEEEec-----cCCCCCCccEEEEEe-
Confidence 6666666666543 588865433222223455666655543222 22332221 1111 00000
Q ss_pred CCCCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhCCCCeEEE
Q 013861 312 NPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAAY 379 (435)
Q Consensus 312 ap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~~lPvaaY 379 (435)
|-.+. ...+..+.++.. .+.|+|.|.++-+..+=+-..+.++.++++++..++||.+.
T Consensus 148 ----gw~~~---~~~~~~~~~~~l---~~~G~~~iivt~i~~~g~~~g~~~~~~~~i~~~~~ipvia~ 205 (254)
T TIGR00735 148 ----GGRES---TGLDAVEWAKEV---EKLGAGEILLTSMDKDGTKSGYDLELTKAVSEAVKIPVIAS 205 (254)
T ss_pred ----CCccc---CCCCHHHHHHHH---HHcCCCEEEEeCcCcccCCCCCCHHHHHHHHHhCCCCEEEe
Confidence 11111 122223333333 36799988865555544445578999999999999999863
No 492
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=27.90 E-value=51 Score=33.62 Aligned_cols=109 Identities=21% Similarity=0.234 Sum_probs=57.6
Q ss_pred ccchhhhcCCCCCCCccccCCCCCCHHHHHHHHHhccccccc--EEecccCCCcccCCCchHHH---HHHHHhh-----C
Q 013861 303 GPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGAD--ILLFSVLGSQVKPGLPYLDV---IRLLRDK-----Y 372 (435)
Q Consensus 303 GPFRdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGAD--ilM~~~~~~~VKPal~YLDI---Ir~vk~~-----~ 372 (435)
|.||-+=-++. .=-|+++|.++-..|...++--=.. =|++.+.| .-||.|+ |.++|+. .
T Consensus 45 GrfR~~G~~Sl------agllpygnaN~iv~em~~eiLp~v~~tPViaGv~a-----tDP~~~~~~fl~~lk~~Gf~GV~ 113 (268)
T PF09370_consen 45 GRFRMAGRGSL------AGLLPYGNANEIVMEMAREILPVVKDTPVIAGVCA-----TDPFRDMDRFLDELKELGFSGVQ 113 (268)
T ss_dssp HHHHHTT--GG------GGGBTEEEHHHHHHHHHHHHGGG-SSS-EEEEE-T-----T-TT--HHHHHHHHHHHT-SEEE
T ss_pred hhHhhCCCcch------hhhhcccCHhHHHHHHHHhhhhhccCCCEEEEecC-----cCCCCcHHHHHHHHHHhCCceEE
Confidence 67775432221 2247888999988888765532221 12233333 3355554 5566653 2
Q ss_pred CCCeEEEE--------------echHHHHHHHHHHCCCCchhhH-HHHHHHHHHHhcccEeehhc
Q 013861 373 PLPIAAYQ--------------VSGEYSMIKAGGALKMIDEQRV-MMESLMCLRRAGADIILTYF 422 (435)
Q Consensus 373 ~lPvaaYq--------------VSGEYaMikaAa~~G~ide~~~-v~Esl~~ikRAGAd~IiTYf 422 (435)
+.|....- .+-|..||+.|.++|++---=+ =-|.-..+-.||||+|+-+.
T Consensus 114 NfPTvgliDG~fR~~LEe~Gmgy~~EVemi~~A~~~gl~T~~yvf~~e~A~~M~~AGaDiiv~H~ 178 (268)
T PF09370_consen 114 NFPTVGLIDGQFRQNLEETGMGYDREVEMIRKAHEKGLFTTAYVFNEEQARAMAEAGADIIVAHM 178 (268)
T ss_dssp E-S-GGG--HHHHHHHHHTT--HHHHHHHHHHHHHTT-EE--EE-SHHHHHHHHHHT-SEEEEE-
T ss_pred ECCcceeeccHHHHHHHhcCCCHHHHHHHHHHHHHCCCeeeeeecCHHHHHHHHHcCCCEEEecC
Confidence 56765532 2347889999999998643211 12344577799999999776
No 493
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=27.86 E-value=6.5e+02 Score=25.49 Aligned_cols=105 Identities=20% Similarity=0.166 Sum_probs=63.1
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCC
Q 013861 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDG 237 (435)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTshGHcGIv~e~g 237 (435)
.|.+.+..+.++||+.|+...= |.-++..... -.-...|+.||+. .+..|. |+..| .||...-
T Consensus 98 ~l~~~L~~~~~~GI~niLaLrG--D~p~~~~~~~-----~~a~dLv~li~~~-~~~~i~--va~yP---eghp~~~---- 160 (296)
T PRK09432 98 ELRTIAKDYWNNGIRHIVALRG--DLPPGSGKPE-----MYASDLVTLLKSV-ADFDIS--VAAYP---EVHPEAK---- 160 (296)
T ss_pred HHHHHHHHHHHCCCCEEEEeCC--CCCCCCCCCC-----cCHHHHHHHHHHh-CCCccc--eeeCC---CCCCCCC----
Confidence 5888889999999999998753 3223322111 1124567777764 444332 33333 5564432
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCc-hHHHHHHHHHHCCC
Q 013861 238 VIMNDETVHQLCKQAVSQARAGADVVSPSDMMDG-RVGAIRAALDAEGF 285 (435)
Q Consensus 238 ~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMMDG-rVgAIR~aLD~~Gf 285 (435)
+-+..++.|-+ -.+||||.+-.-=-.|. .+....+.+.+.|.
T Consensus 161 --~~~~dl~~Lk~----K~~aGA~~~iTQ~~Fd~~~~~~f~~~~~~~Gi 203 (296)
T PRK09432 161 --SAQADLINLKR----KVDAGANRAITQFFFDVESYLRFRDRCVSAGI 203 (296)
T ss_pred --CHHHHHHHHHH----HHHcCCCeeecccccchHHHHHHHHHHHHcCC
Confidence 12344444433 35799998877777774 45678888888885
No 494
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=27.42 E-value=30 Score=32.91 Aligned_cols=54 Identities=30% Similarity=0.420 Sum_probs=40.2
Q ss_pred ccccEEecccCCCcccCCCchHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEeeh
Q 013861 341 EGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILT 420 (435)
Q Consensus 341 EGADilM~~~~~~~VKPal~YLDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G~ide~~~v~Esl~~ikRAGAd~IiT 420 (435)
-..|++= |=|| ..-.+|++++++++.|+.| -|+++.++-+.|. .+|||+.|=|
T Consensus 116 ~~PD~vE-------ilPg-~~p~vi~~i~~~~~~PiIA---------------GGLI~~~e~v~~a----l~aGa~aVST 168 (175)
T PF04309_consen 116 SKPDAVE-------ILPG-VMPKVIKKIREETNIPIIA---------------GGLIRTKEDVEEA----LKAGADAVST 168 (175)
T ss_dssp HT-SEEE-------EESC-CHHHHHCCCCCCCSS-EEE---------------ESS--SHHHHHHH----CCTTCEEEEE
T ss_pred cCCCEEE-------EchH-HHHHHHHHHHHhcCCCEEe---------------ecccCCHHHHHHH----HHcCCEEEEc
Confidence 4677777 8899 6668999999999999976 6899998777665 5789999876
Q ss_pred h
Q 013861 421 Y 421 (435)
Q Consensus 421 Y 421 (435)
.
T Consensus 169 S 169 (175)
T PF04309_consen 169 S 169 (175)
T ss_dssp -
T ss_pred C
Confidence 4
No 495
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=27.42 E-value=3.3e+02 Score=25.86 Aligned_cols=95 Identities=19% Similarity=0.253 Sum_probs=52.3
Q ss_pred echhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCC--CeEEEeeecccCCCCCCcc
Q 013861 153 LGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYP--DLVIYTDVALDPYSSDGHD 230 (435)
Q Consensus 153 ~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~P--dl~IitDVcLc~YTshGHc 230 (435)
.|++..+.+.++++.+.|+++|=||..-|.... ..-+-...++.+|+.+- +|-|. +..||..
T Consensus 6 ~~~~~~~~~~~~~~~~~G~~~vel~~~~~~~~~---------~~~~~~~~~~~l~~~~~~~gl~ls---~h~p~~~---- 69 (273)
T smart00518 6 VSAAGGLYKAFIEAVDIGARSFQLFLGNPRSWK---------GVRLSEETAEKFKEALKENNIDVS---VHAPYLI---- 69 (273)
T ss_pred EcccCcHhHHHHHHHHcCCCEEEEECCCCCCCC---------CCCCCHHHHHHHHHHHHHcCCCEE---EECCcee----
Confidence 444456788999999999999999986332211 11122223444444332 23322 1234420
Q ss_pred eeecCCCccccHHHHHHHHHHHHHHHHcCCCeec
Q 013861 231 GIVREDGVIMNDETVHQLCKQAVSQARAGADVVS 264 (435)
Q Consensus 231 GIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVA 264 (435)
-+...+. -.-+.+++.+-+..-.-++-||++|.
T Consensus 70 nl~s~d~-~~r~~~~~~l~~~i~~A~~lGa~~vv 102 (273)
T smart00518 70 NLASPDK-EKVEKSIERLIDEIKRCEELGIKALV 102 (273)
T ss_pred cCCCCCH-HHHHHHHHHHHHHHHHHHHcCCCEEE
Confidence 1111111 12357777777777777778998665
No 496
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=27.36 E-value=6.5e+02 Score=25.31 Aligned_cols=118 Identities=12% Similarity=0.218 Sum_probs=73.5
Q ss_pred hhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCC--------
Q 013861 157 HGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDG-------- 228 (435)
Q Consensus 157 ~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTshG-------- 228 (435)
+.++++++++++.|.+++-+- +.. + .-.+-++.+++.+|++-++.|.+ +.||...
T Consensus 134 ~~~~~~a~~~~~~Gf~~~KiK--v~~-----------~---~d~~~v~~vr~~~~~~~l~vDaN-~~~~~~~a~~~~~l~ 196 (324)
T TIGR01928 134 EQMLKQIESLKATGYKRIKLK--ITP-----------Q---IMHQLVKLRRLRFPQIPLVIDAN-ESYDLQDFPRLKELD 196 (324)
T ss_pred HHHHHHHHHHHHcCCcEEEEE--eCC-----------c---hhHHHHHHHHHhCCCCcEEEECC-CCCCHHHHHHHHHHh
Confidence 358899999999999998873 221 0 01357899999999999999997 6676542
Q ss_pred cceee-cCCCc-cccHHHHHHHHH-----------------HHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCCCce
Q 013861 229 HDGIV-REDGV-IMNDETVHQLCK-----------------QAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVS 289 (435)
Q Consensus 229 HcGIv-~e~g~-IdND~Tv~~Lak-----------------~Avs~A~AGADiVAPSDMMDGrVgAIR~aLD~~Gf~~v~ 289 (435)
+.++. -|+-. -+|-+.+..|.+ ..--..+.++|++-|-=|--|-|...|+..+.+--.++.
T Consensus 197 ~~~~~~iEeP~~~~~~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~~~dvi~~d~~~~GGit~~~~~~~~A~~~gi~ 276 (324)
T TIGR01928 197 RYQLLYIEEPFKIDDLSMLDELAKGTITPICLDESITSLDDARNLIELGNVKVINIKPGRLGGLTEVQKAIETCREHGAK 276 (324)
T ss_pred hCCCcEEECCCChhHHHHHHHHHhhcCCCEeeCCCcCCHHHHHHHHHcCCCCEEEeCcchhcCHHHHHHHHHHHHHcCCe
Confidence 11221 01111 123344444443 222334556899999888889888777666544333444
Q ss_pred ee
Q 013861 290 IM 291 (435)
Q Consensus 290 IM 291 (435)
+|
T Consensus 277 ~~ 278 (324)
T TIGR01928 277 VW 278 (324)
T ss_pred EE
Confidence 44
No 497
>cd06341 PBP1_ABC_ligand_binding_like_7 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=27.34 E-value=2.7e+02 Score=26.82 Aligned_cols=96 Identities=10% Similarity=0.047 Sum_probs=53.4
Q ss_pred HHHHHHHHCCCCCceeechhhh-hcccccccchhhhcCCCC-CCCccccCCCCCCHHHHHHHHHhcccccccEEecccCC
Q 013861 275 AIRAALDAEGFQHVSIMSYTAK-YASSFYGPFREALDSNPR-FGDKKTYQMNPANYREALVEAQADESEGADILLFSVLG 352 (435)
Q Consensus 275 AIR~aLD~~Gf~~v~IMSYSaK-yASafYGPFRdA~~Sap~-fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~ 352 (435)
++-+.|-+.|+.++.++.+... |.-....-|++++..... ....-.|..+..+....+.++.. .+.|.|++..-
T Consensus 122 ~~~~~l~~~g~~~~~~i~~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~~~~i~~---~~pdaV~~~~~- 197 (341)
T cd06341 122 TWGDFAKDQGGTRAVALVTALSAAVSAAAALLARSLAAAGVSVAGIVVITATAPDPTPQAQQAAA---AGADAIITVLD- 197 (341)
T ss_pred HHHHHHHHcCCcEEEEEEeCCcHHHHHHHHHHHHHHHHcCCccccccccCCCCCCHHHHHHHHHh---cCCCEEEEecC-
Confidence 3344455567777777754433 555566667777754322 12233455555667777777653 47898882211
Q ss_pred CcccCCCchHHHHHHHHhh-CCCCeEEE
Q 013861 353 SQVKPGLPYLDVIRLLRDK-YPLPIAAY 379 (435)
Q Consensus 353 ~~VKPal~YLDIIr~vk~~-~~lPvaaY 379 (435)
.-.-.-+++.+++. ++.|+...
T Consensus 198 -----~~~a~~~~~~~~~~G~~~~~~~~ 220 (341)
T cd06341 198 -----AAVCASVLKAVRAAGLTPKVVLS 220 (341)
T ss_pred -----hHHHHHHHHHHHHcCCCCCEEEe
Confidence 11346677777764 35565443
No 498
>cd08573 GDPD_GDE1 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE1 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE1 (also known as MIR16, membrane interacting protein of RGS16) and their metazoan homologs. GDE1 is widely expressed in mammalian tissues, including the heart, brain, liver, and kidney. It shows sequence homology to bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. GDE1 has been characterized as GPI-GDE (EC 3.1.4.44) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate glycerol phosphate and inositol. It functions as an integral membrane-bound glycoprotein interacting with regulator of G protein signaling protein RGS16, and is modulated by G
Probab=27.28 E-value=1e+02 Score=29.95 Aligned_cols=53 Identities=15% Similarity=0.188 Sum_probs=37.6
Q ss_pred cccccEEecccCCCcccCCCchHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHH-hcccEe
Q 013861 340 SEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRR-AGADII 418 (435)
Q Consensus 340 ~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G~ide~~~v~Esl~~ikR-AGAd~I 418 (435)
..|+|.+. +.-.+..-++++++++. +++|.+|-| |.. +.+..+.+ .|.| |
T Consensus 203 ~~~~~~v~-------~~~~~~~~~~v~~~~~~-G~~v~vWTV----------------n~~----~~~~~l~~~~GVd-i 253 (258)
T cd08573 203 FLGVSALL-------IHKDDISSAYVRYWRAR-GIRVIAWTV----------------NTP----TEKQYFAKTLNVP-Y 253 (258)
T ss_pred hcCeeEEE-------echHhcCHHHHHHHHHC-CCEEEEEec----------------CCH----HHHHHHHHHhCCC-e
Confidence 35899988 55555556778887775 999999998 332 22345556 7999 8
Q ss_pred ehh
Q 013861 419 LTY 421 (435)
Q Consensus 419 iTY 421 (435)
||-
T Consensus 254 iTD 256 (258)
T cd08573 254 ITD 256 (258)
T ss_pred ecC
Confidence 883
No 499
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=27.27 E-value=2.2e+02 Score=28.92 Aligned_cols=37 Identities=22% Similarity=0.344 Sum_probs=25.3
Q ss_pred cccccEEecccCCCcccC--CC--chHHHHHHHHhhCCCCeEE
Q 013861 340 SEGADILLFSVLGSQVKP--GL--PYLDVIRLLRDKYPLPIAA 378 (435)
Q Consensus 340 ~EGADilM~~~~~~~VKP--al--~YLDIIr~vk~~~~lPvaa 378 (435)
+.|+|+|..+ |-..+. .. ...|.|+++|+..++||.+
T Consensus 159 ~~Gvd~i~Vh--~Rt~~~~y~g~~~~~~~i~~ik~~~~iPVi~ 199 (312)
T PRK10550 159 QAGATELVVH--GRTKEDGYRAEHINWQAIGEIRQRLTIPVIA 199 (312)
T ss_pred hcCCCEEEEC--CCCCccCCCCCcccHHHHHHHHhhcCCcEEE
Confidence 5899999932 211111 11 2569999999999999876
No 500
>TIGR01091 upp uracil phosphoribosyltransferase. that includes uracil phosphoribosyltransferase, uridine kinases, and other, uncharacterized proteins.
Probab=27.19 E-value=1.7e+02 Score=27.75 Aligned_cols=49 Identities=22% Similarity=0.395 Sum_probs=37.7
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCC
Q 013861 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPY 224 (435)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~Y 224 (435)
.+..-++.+.+.|.++|.+.-.+- .+.+++.|.++||++-|+| .++|+-
T Consensus 137 Tl~~ai~~L~~~G~~~I~v~~ll~-----------------~~~gl~~l~~~~p~v~i~~-~~id~~ 185 (207)
T TIGR01091 137 TMIAALDLLKKRGAKKIKVLSIVA-----------------APEGIEAVEKAHPDVDIYT-AAIDEK 185 (207)
T ss_pred HHHHHHHHHHHcCCCEEEEEEEec-----------------CHHHHHHHHHHCCCCEEEE-EEECCC
Confidence 578889999999999987755432 1358899999999988885 456664
Done!