Query 013861
Match_columns 435
No_of_seqs 132 out of 1053
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 18:29:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013861.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013861hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w5q_A Delta-aminolevulinic ac 100.0 9E-158 3E-162 1159.6 32.3 331 92-432 2-335 (337)
2 1w1z_A Delta-aminolevulinic ac 100.0 3E-156 1E-160 1146.0 30.4 325 96-431 3-328 (328)
3 3obk_A Delta-aminolevulinic ac 100.0 4E-156 1E-160 1153.5 30.3 333 89-432 9-343 (356)
4 1l6s_A Porphobilinogen synthas 100.0 7E-154 2E-158 1127.2 32.0 319 101-431 2-321 (323)
5 1h7n_A 5-aminolaevulinic acid 100.0 5E-152 2E-156 1121.7 33.5 327 99-433 11-341 (342)
6 1pv8_A Delta-aminolevulinic ac 100.0 2E-151 5E-156 1114.1 29.0 323 101-432 2-329 (330)
7 3ajx_A 3-hexulose-6-phosphate 96.5 0.054 1.9E-06 47.8 13.6 168 158-419 14-184 (207)
8 1rd5_A Tryptophan synthase alp 96.5 0.12 3.9E-06 48.0 16.3 185 158-425 33-236 (262)
9 1qop_A Tryptophan synthase alp 96.4 0.17 5.7E-06 47.7 16.8 178 158-420 32-233 (268)
10 1vhc_A Putative KHG/KDPG aldol 95.6 0.21 7.3E-06 46.5 13.8 150 158-419 30-184 (224)
11 3nav_A Tryptophan synthase alp 95.6 0.4 1.4E-05 46.2 15.9 155 158-378 35-213 (271)
12 1y0e_A Putative N-acetylmannos 95.5 0.6 2E-05 41.6 15.9 166 158-420 24-203 (223)
13 1wbh_A KHG/KDPG aldolase; lyas 95.4 0.16 5.6E-06 46.8 12.1 151 158-419 29-183 (214)
14 1mxs_A KDPG aldolase; 2-keto-3 95.2 0.15 5.3E-06 47.5 11.2 150 158-419 39-193 (225)
15 3vnd_A TSA, tryptophan synthas 94.7 1.2 4.1E-05 42.7 16.3 185 158-426 33-242 (267)
16 2ekc_A AQ_1548, tryptophan syn 94.7 0.59 2E-05 43.9 14.0 156 158-378 32-211 (262)
17 3f4w_A Putative hexulose 6 pho 94.6 0.24 8.2E-06 43.8 10.4 163 159-420 15-186 (211)
18 1wa3_A 2-keto-3-deoxy-6-phosph 94.5 0.34 1.2E-05 42.8 11.1 154 154-419 20-176 (205)
19 3eol_A Isocitrate lyase; seatt 94.3 0.42 1.4E-05 49.4 12.8 153 250-420 164-346 (433)
20 2yw3_A 4-hydroxy-2-oxoglutarat 94.0 0.93 3.2E-05 41.3 13.1 149 158-419 26-177 (207)
21 4e38_A Keto-hydroxyglutarate-a 93.3 1.8 6E-05 41.0 14.2 151 158-419 47-200 (232)
22 3lg3_A Isocitrate lyase; conse 93.2 1 3.5E-05 46.6 13.3 148 251-419 172-350 (435)
23 3lye_A Oxaloacetate acetyl hyd 92.6 1.3 4.3E-05 43.7 12.4 155 166-381 41-223 (307)
24 1zlp_A PSR132, petal death pro 92.1 1.5 5.2E-05 43.4 12.4 166 147-381 43-233 (318)
25 3igs_A N-acetylmannosamine-6-p 92.0 0.6 2E-05 43.5 8.9 167 158-419 37-208 (232)
26 3q58_A N-acetylmannosamine-6-p 91.9 0.57 2E-05 43.6 8.7 168 158-420 37-209 (229)
27 1geq_A Tryptophan synthase alp 91.7 2.2 7.6E-05 38.6 12.2 114 252-420 101-219 (248)
28 1vzw_A Phosphoribosyl isomeras 91.5 0.27 9.3E-06 44.5 6.0 58 316-378 23-80 (244)
29 3fa4_A 2,3-dimethylmalate lyas 91.4 1.7 6E-05 42.7 11.9 189 166-415 34-262 (302)
30 1f8m_A Isocitrate lyase, ICL; 91.3 0.87 3E-05 47.0 10.0 122 250-387 167-321 (429)
31 2w6r_A Imidazole glycerol phos 91.3 8.4 0.00029 35.0 15.6 178 148-378 23-205 (266)
32 2qiw_A PEP phosphonomutase; st 91.2 1.3 4.4E-05 42.3 10.4 167 146-377 23-208 (255)
33 1o66_A 3-methyl-2-oxobutanoate 91.0 2.2 7.6E-05 41.6 12.1 165 147-343 85-255 (275)
34 2ze3_A DFA0005; organic waste 90.8 2.8 9.6E-05 40.4 12.5 159 168-382 34-212 (275)
35 3i4e_A Isocitrate lyase; struc 90.7 1.2 4.1E-05 46.2 10.3 120 250-386 171-324 (439)
36 1to3_A Putative aldolase YIHT; 90.2 0.83 2.8E-05 44.3 8.3 118 257-420 119-253 (304)
37 2yzr_A Pyridoxal biosynthesis 90.1 1.5 5.1E-05 43.9 10.2 88 249-347 27-146 (330)
38 1s2w_A Phosphoenolpyruvate pho 89.5 2.7 9.2E-05 40.9 11.3 125 201-378 69-214 (295)
39 1lt8_A Betaine-homocysteine me 89.5 1.8 6E-05 44.0 10.4 227 158-431 54-315 (406)
40 1kbi_A Cytochrome B2, L-LCR; f 89.3 1.8 6.2E-05 44.9 10.4 39 362-420 332-370 (511)
41 2hjp_A Phosphonopyruvate hydro 88.6 2.1 7.1E-05 41.7 9.8 203 146-414 18-257 (290)
42 3lab_A Putative KDPG (2-keto-3 88.4 8.2 0.00028 36.3 13.3 154 158-419 26-185 (217)
43 2v82_A 2-dehydro-3-deoxy-6-pho 88.3 1.5 5.2E-05 38.8 8.0 142 244-419 17-174 (212)
44 1vzw_A Phosphoribosyl isomeras 88.2 14 0.00048 33.2 14.5 181 158-419 33-220 (244)
45 1ujp_A Tryptophan synthase alp 88.1 1.6 5.6E-05 41.6 8.5 92 252-378 112-207 (271)
46 3na8_A Putative dihydrodipicol 88.1 2.9 0.0001 40.5 10.4 135 195-383 11-160 (315)
47 3si9_A DHDPS, dihydrodipicolin 87.7 2.9 0.0001 40.5 10.2 115 234-383 35-158 (315)
48 3eoo_A Methylisocitrate lyase; 86.8 1.8 6.2E-05 42.4 8.1 155 167-381 39-215 (298)
49 3tr9_A Dihydropteroate synthas 86.7 1.2 4.2E-05 44.1 7.0 103 309-422 34-156 (314)
50 3tak_A DHDPS, dihydrodipicolin 86.6 3.8 0.00013 39.0 10.2 115 234-383 14-137 (291)
51 3s1x_A Probable transaldolase; 86.4 1.3 4.6E-05 41.9 6.8 66 247-347 113-186 (223)
52 1q7z_A 5-methyltetrahydrofolat 86.4 5.5 0.00019 41.9 12.1 269 113-432 5-289 (566)
53 3cpr_A Dihydrodipicolinate syn 86.3 5.3 0.00018 38.4 11.0 109 234-383 29-152 (304)
54 3flu_A DHDPS, dihydrodipicolin 86.2 4.6 0.00016 38.6 10.5 115 234-383 20-143 (297)
55 2v9d_A YAGE; dihydrodipicolini 85.9 3.4 0.00012 40.6 9.7 109 234-383 44-167 (343)
56 2y88_A Phosphoribosyl isomeras 85.8 0.53 1.8E-05 42.4 3.6 58 316-378 22-79 (244)
57 3l21_A DHDPS, dihydrodipicolin 85.4 4.7 0.00016 38.8 10.2 109 234-383 28-151 (304)
58 1xg4_A Probable methylisocitra 85.1 2.9 9.7E-05 40.8 8.6 167 146-378 20-208 (295)
59 1oy0_A Ketopantoate hydroxymet 84.9 4.4 0.00015 39.6 9.8 171 132-343 96-273 (281)
60 2y88_A Phosphoribosyl isomeras 84.9 11 0.00037 33.8 11.8 188 158-419 32-223 (244)
61 3ih1_A Methylisocitrate lyase; 84.6 2.6 8.9E-05 41.4 8.1 166 146-381 32-219 (305)
62 1yxy_A Putative N-acetylmannos 84.3 13 0.00043 33.4 11.9 67 160-263 91-157 (234)
63 1m3u_A 3-methyl-2-oxobutanoate 84.1 5.7 0.00019 38.5 10.1 165 147-343 85-255 (264)
64 1o66_A 3-methyl-2-oxobutanoate 83.8 8.8 0.0003 37.4 11.3 175 146-379 20-202 (275)
65 1thf_D HISF protein; thermophI 83.4 1.1 3.8E-05 40.5 4.6 39 340-378 41-79 (253)
66 2dgd_A 223AA long hypothetical 82.9 0.82 2.8E-05 41.2 3.5 43 330-378 156-201 (223)
67 2wkj_A N-acetylneuraminate lya 82.8 5.3 0.00018 38.3 9.3 109 234-383 24-148 (303)
68 3r8r_A Transaldolase; pentose 82.8 1.8 6.1E-05 40.7 5.8 65 248-347 112-184 (212)
69 1oy0_A Ketopantoate hydroxymet 82.6 2.9 0.0001 40.9 7.5 139 251-420 46-198 (281)
70 3b8i_A PA4872 oxaloacetate dec 82.5 4.5 0.00015 39.4 8.7 164 146-377 24-208 (287)
71 3bg3_A Pyruvate carboxylase, m 82.2 22 0.00075 38.7 14.7 201 132-381 102-312 (718)
72 3ovp_A Ribulose-phosphate 3-ep 82.1 10 0.00036 35.0 10.7 172 158-420 18-196 (228)
73 3vav_A 3-methyl-2-oxobutanoate 82.0 2.5 8.6E-05 41.2 6.7 139 252-420 42-192 (275)
74 2vp8_A Dihydropteroate synthas 82.0 1.7 5.7E-05 43.1 5.6 104 309-422 48-168 (318)
75 3jr2_A Hexulose-6-phosphate sy 81.8 4.8 0.00016 36.3 8.1 90 322-418 12-113 (218)
76 1q7z_A 5-methyltetrahydrofolat 81.8 3.6 0.00012 43.3 8.3 164 244-423 250-440 (566)
77 3eul_A Possible nitrate/nitrit 81.6 10 0.00034 30.3 9.2 95 326-432 48-149 (152)
78 3ctl_A D-allulose-6-phosphate 81.4 6.2 0.00021 36.8 8.9 54 322-380 9-64 (231)
79 3ih1_A Methylisocitrate lyase; 81.3 7.5 0.00026 38.2 9.9 102 158-280 105-210 (305)
80 1ujp_A Tryptophan synthase alp 81.1 2.8 9.5E-05 40.0 6.6 58 361-419 79-149 (271)
81 1yad_A Regulatory protein TENI 80.7 2.6 8.8E-05 37.7 5.9 60 340-419 128-190 (221)
82 3vav_A 3-methyl-2-oxobutanoate 80.2 12 0.00042 36.4 10.8 165 147-343 97-267 (275)
83 1vqt_A Orotidine 5'-phosphate 80.2 2.1 7.3E-05 39.3 5.3 151 189-419 40-190 (213)
84 1f76_A Dihydroorotate dehydrog 80.1 4.6 0.00016 38.6 7.8 77 328-419 151-243 (336)
85 1h1y_A D-ribulose-5-phosphate 80.0 2.4 8.2E-05 38.5 5.6 76 320-420 117-200 (228)
86 1zlp_A PSR132, petal death pro 79.9 9.8 0.00034 37.6 10.2 119 147-292 108-230 (318)
87 1vyr_A Pentaerythritol tetrani 79.3 50 0.0017 32.4 16.4 48 330-378 252-299 (364)
88 2vef_A Dihydropteroate synthas 78.8 2.5 8.4E-05 41.6 5.5 103 309-422 16-137 (314)
89 2qjg_A Putative aldolase MJ040 78.8 4.5 0.00015 37.2 7.0 71 324-420 164-236 (273)
90 1aj0_A DHPS, dihydropteroate s 78.7 3.5 0.00012 39.9 6.5 106 309-422 21-141 (282)
91 3hgj_A Chromate reductase; TIM 78.7 12 0.00042 36.4 10.4 96 158-267 153-260 (349)
92 3ixl_A Amdase, arylmalonate de 78.6 4.5 0.00016 37.5 7.1 123 248-377 55-209 (240)
93 3f6p_A Transcriptional regulat 78.5 8.7 0.0003 29.6 7.6 66 326-398 33-98 (120)
94 1tx2_A DHPS, dihydropteroate s 77.3 6.5 0.00022 38.4 8.0 106 309-422 46-167 (297)
95 3lye_A Oxaloacetate acetyl hyd 77.1 16 0.00055 35.9 10.8 103 158-281 104-214 (307)
96 2gou_A Oxidoreductase, FMN-bin 76.9 59 0.002 31.9 15.7 39 339-378 260-298 (365)
97 1mzh_A Deoxyribose-phosphate a 76.8 7.9 0.00027 35.5 8.0 71 339-431 142-214 (225)
98 3nav_A Tryptophan synthase alp 76.7 9 0.00031 36.8 8.7 57 361-418 84-154 (271)
99 2jfz_A Glutamate racemase; cel 76.1 7 0.00024 36.2 7.6 134 202-347 15-178 (255)
100 3ctl_A D-allulose-6-phosphate 76.0 1 3.4E-05 42.1 1.8 135 256-421 22-195 (231)
101 3h5d_A DHDPS, dihydrodipicolin 76.0 12 0.0004 36.2 9.3 115 234-383 20-144 (311)
102 1qo2_A Molecule: N-((5-phospho 75.9 1.7 6E-05 39.3 3.3 59 316-378 20-78 (241)
103 1h5y_A HISF; histidine biosynt 75.7 3.3 0.00011 36.6 5.0 39 340-378 44-82 (253)
104 2yci_X 5-methyltetrahydrofolat 75.5 9.6 0.00033 36.5 8.5 95 326-422 31-133 (271)
105 3i10_A Putative glycerophospho 75.4 15 0.00051 35.0 9.8 64 361-433 207-274 (278)
106 1xg4_A Probable methylisocitra 75.2 24 0.00081 34.3 11.3 115 147-281 85-203 (295)
107 3tdn_A FLR symmetric alpha-bet 75.2 5.5 0.00019 36.2 6.5 49 327-378 36-84 (247)
108 2ekc_A AQ_1548, tryptophan syn 74.9 8.1 0.00028 36.2 7.7 57 361-418 81-151 (262)
109 1b73_A Glutamate racemase; iso 74.2 25 0.00085 32.4 10.7 166 202-391 15-208 (254)
110 1ka9_F Imidazole glycerol phos 74.1 6.7 0.00023 35.3 6.7 49 327-378 32-80 (252)
111 1ps9_A 2,4-dienoyl-COA reducta 74.0 47 0.0016 34.5 13.9 174 214-418 53-307 (671)
112 2ze3_A DFA0005; organic waste 74.0 27 0.00092 33.6 11.2 116 147-280 83-203 (275)
113 2hjp_A Phosphonopyruvate hydro 73.2 30 0.001 33.6 11.4 121 147-291 82-209 (290)
114 2gzm_A Glutamate racemase; enz 72.7 29 0.00099 32.4 10.9 29 391-419 150-181 (267)
115 2qf7_A Pyruvate carboxylase pr 72.5 96 0.0033 35.4 16.8 200 132-381 550-759 (1165)
116 1p0k_A Isopentenyl-diphosphate 71.7 12 0.00041 36.1 8.2 43 361-420 166-208 (349)
117 1qop_A Tryptophan synthase alp 71.5 7.4 0.00025 36.4 6.6 18 361-378 81-99 (268)
118 1eye_A DHPS 1, dihydropteroate 71.3 8.6 0.00029 37.1 7.1 104 310-422 13-132 (280)
119 2nx9_A Oxaloacetate decarboxyl 70.6 15 0.00052 37.8 9.1 125 147-303 91-226 (464)
120 3f4w_A Putative hexulose 6 pho 70.3 22 0.00076 31.1 9.0 90 323-419 7-108 (211)
121 2y5s_A DHPS, dihydropteroate s 70.3 6.6 0.00022 38.3 6.1 104 309-422 29-148 (294)
122 1q6o_A Humps, 3-keto-L-gulonat 70.1 11 0.00036 33.8 7.0 62 201-285 45-107 (216)
123 4af0_A Inosine-5'-monophosphat 70.1 31 0.0011 36.8 11.5 69 156-263 279-347 (556)
124 2yr1_A 3-dehydroquinate dehydr 69.5 8.5 0.00029 36.4 6.5 98 324-422 27-147 (257)
125 3gl9_A Response regulator; bet 69.2 21 0.0007 27.6 7.7 66 326-398 33-101 (122)
126 2zbt_A Pyridoxal biosynthesis 68.0 7.1 0.00024 36.6 5.6 41 361-419 195-236 (297)
127 3cg0_A Response regulator rece 67.9 20 0.00068 27.7 7.4 67 325-398 40-107 (140)
128 1yxy_A Putative N-acetylmannos 67.8 12 0.00043 33.4 7.0 61 339-420 150-214 (234)
129 4hb7_A Dihydropteroate synthas 67.4 6.6 0.00022 38.2 5.3 101 309-421 13-132 (270)
130 3vkj_A Isopentenyl-diphosphate 67.2 5.6 0.00019 39.6 5.0 96 306-419 114-216 (368)
131 3d0c_A Dihydrodipicolinate syn 66.9 7.9 0.00027 37.4 5.8 113 235-383 26-147 (314)
132 2h9a_B CO dehydrogenase/acetyl 66.8 22 0.00074 34.9 9.0 117 299-422 41-181 (310)
133 1w8s_A FBP aldolase, fructose- 66.4 48 0.0016 31.1 11.0 114 257-420 103-230 (263)
134 3t7v_A Methylornithine synthas 66.3 29 0.00099 32.9 9.6 56 318-377 86-144 (350)
135 2eq5_A 228AA long hypothetical 66.1 38 0.0013 30.1 9.8 156 202-377 26-203 (228)
136 3ffs_A Inosine-5-monophosphate 66.1 8.2 0.00028 39.1 6.0 57 340-420 154-211 (400)
137 3eod_A Protein HNR; response r 65.8 19 0.00065 27.7 6.8 62 327-395 39-101 (130)
138 1k66_A Phytochrome response re 65.5 45 0.0015 25.8 9.3 68 327-398 40-117 (149)
139 4h3d_A 3-dehydroquinate dehydr 65.5 17 0.00059 34.3 7.7 98 325-422 28-147 (258)
140 4fxs_A Inosine-5'-monophosphat 65.4 6 0.00021 40.7 4.9 54 339-419 240-298 (496)
141 2pju_A Propionate catabolism o 65.4 41 0.0014 31.3 10.2 120 286-428 14-169 (225)
142 1m3u_A 3-methyl-2-oxobutanoate 65.3 73 0.0025 30.7 12.2 170 146-379 20-202 (264)
143 2a9o_A Response regulator; ess 65.2 23 0.00079 26.5 7.1 65 327-398 33-97 (120)
144 3ru6_A Orotidine 5'-phosphate 64.9 5.1 0.00018 39.4 4.1 47 322-378 30-81 (303)
145 3b8i_A PA4872 oxaloacetate dec 64.8 30 0.001 33.6 9.4 109 147-280 89-203 (287)
146 3heb_A Response regulator rece 64.7 51 0.0017 26.1 9.8 69 326-398 37-114 (152)
147 3exr_A RMPD (hexulose-6-phosph 64.6 12 0.00042 34.3 6.4 61 201-284 47-108 (221)
148 2q5c_A NTRC family transcripti 64.5 34 0.0012 30.7 9.2 90 326-428 36-157 (196)
149 2czd_A Orotidine 5'-phosphate 64.3 2.8 9.6E-05 37.5 2.0 72 323-418 6-82 (208)
150 1ep3_A Dihydroorotate dehydrog 64.2 16 0.00056 33.8 7.2 73 332-420 113-195 (311)
151 2dqw_A Dihydropteroate synthas 64.0 4.2 0.00014 39.8 3.3 102 309-422 35-154 (294)
152 3eoo_A Methylisocitrate lyase; 63.9 74 0.0025 31.0 12.0 102 158-280 99-206 (298)
153 1tmy_A CHEY protein, TMY; chem 63.4 25 0.00085 26.5 7.0 64 325-398 33-100 (120)
154 4e7p_A Response regulator; DNA 63.4 54 0.0018 26.0 9.4 66 326-398 53-119 (150)
155 3kht_A Response regulator; PSI 63.1 45 0.0015 26.1 8.7 62 326-397 38-105 (144)
156 2ehh_A DHDPS, dihydrodipicolin 63.1 9.7 0.00033 36.2 5.6 107 236-383 15-136 (294)
157 3o63_A Probable thiamine-phosp 62.8 11 0.00037 35.5 5.7 70 326-419 143-217 (243)
158 2xed_A Putative maleate isomer 62.5 2.5 8.5E-05 40.0 1.3 120 248-377 79-237 (273)
159 3cnb_A DNA-binding response re 62.4 51 0.0017 25.3 9.4 66 326-398 41-109 (143)
160 2fym_A Enolase; RNA degradosom 62.4 10 0.00035 38.0 5.9 125 271-420 220-368 (431)
161 2tps_A Protein (thiamin phosph 62.3 17 0.00058 32.1 6.7 70 326-419 124-198 (227)
162 1ka9_F Imidazole glycerol phos 62.3 23 0.00078 31.8 7.6 191 158-419 32-223 (252)
163 2rfg_A Dihydrodipicolinate syn 62.3 10 0.00034 36.3 5.5 108 235-383 14-136 (297)
164 3t6k_A Response regulator rece 62.3 28 0.00095 27.4 7.3 65 327-398 36-103 (136)
165 2vc6_A MOSA, dihydrodipicolina 62.3 10 0.00035 36.0 5.6 108 235-383 14-136 (292)
166 3jte_A Response regulator rece 62.2 54 0.0018 25.5 9.7 67 327-398 35-102 (143)
167 2qzj_A Two-component response 61.7 27 0.00094 27.4 7.2 66 326-398 35-100 (136)
168 1mzh_A Deoxyribose-phosphate a 61.5 22 0.00075 32.5 7.5 144 221-422 4-153 (225)
169 3hdg_A Uncharacterized protein 61.5 40 0.0014 26.0 8.1 64 326-396 38-102 (137)
170 1xhf_A DYE resistance, aerobic 61.4 27 0.00094 26.4 6.9 66 326-398 34-99 (123)
171 1o94_A Tmadh, trimethylamine d 61.1 21 0.00073 37.8 8.2 44 335-378 243-296 (729)
172 2ojp_A DHDPS, dihydrodipicolin 61.0 11 0.00037 35.9 5.5 109 234-383 14-137 (292)
173 1thf_D HISF protein; thermophI 60.9 28 0.00095 31.3 7.9 44 328-378 153-200 (253)
174 1xky_A Dihydrodipicolinate syn 60.8 11 0.00038 36.1 5.5 115 234-383 25-148 (301)
175 1h5y_A HISF; histidine biosynt 60.6 48 0.0017 29.0 9.3 91 159-285 156-249 (253)
176 3l5l_A Xenobiotic reductase A; 60.5 19 0.00066 35.3 7.3 97 158-267 159-267 (363)
177 3gt7_A Sensor protein; structu 60.4 53 0.0018 26.3 8.9 64 327-397 39-105 (154)
178 3o1n_A 3-dehydroquinate dehydr 60.1 22 0.00074 34.1 7.4 100 322-422 45-167 (276)
179 2pl1_A Transcriptional regulat 60.0 44 0.0015 25.0 7.8 66 326-398 31-97 (121)
180 3crn_A Response regulator rece 59.9 35 0.0012 26.5 7.5 66 326-398 34-100 (132)
181 4fo4_A Inosine 5'-monophosphat 59.9 11 0.00039 37.5 5.6 57 340-420 118-176 (366)
182 2qr3_A Two-component system re 59.7 46 0.0016 25.6 8.1 66 326-398 34-105 (140)
183 3m5v_A DHDPS, dihydrodipicolin 59.5 12 0.00041 35.8 5.5 115 235-383 21-144 (301)
184 1srr_A SPO0F, sporulation resp 59.4 25 0.00087 26.7 6.5 66 326-398 34-100 (124)
185 1sfl_A 3-dehydroquinate dehydr 59.3 15 0.00051 34.2 6.0 96 326-422 14-133 (238)
186 1k68_A Phytochrome response re 59.3 56 0.0019 24.8 9.4 69 326-398 35-110 (140)
187 3r2g_A Inosine 5'-monophosphat 59.2 24 0.00082 35.3 7.8 77 157-274 99-176 (361)
188 2qxy_A Response regulator; reg 59.1 18 0.00062 28.2 5.7 65 326-398 35-100 (142)
189 2yxg_A DHDPS, dihydrodipicolin 59.1 11 0.00039 35.7 5.2 107 236-383 15-136 (289)
190 4fo4_A Inosine 5'-monophosphat 59.1 50 0.0017 32.9 10.1 46 159-217 109-154 (366)
191 3e96_A Dihydrodipicolinate syn 59.0 9.6 0.00033 36.8 4.8 123 206-381 8-145 (316)
192 1z41_A YQJM, probable NADH-dep 58.7 27 0.00092 33.7 7.9 94 159-267 146-250 (338)
193 2zay_A Response regulator rece 58.0 30 0.001 27.1 6.8 66 326-398 39-107 (147)
194 1geq_A Tryptophan synthase alp 57.9 26 0.0009 31.5 7.2 19 361-379 68-86 (248)
195 2r8w_A AGR_C_1641P; APC7498, d 57.9 11 0.00037 36.8 5.0 109 234-383 47-170 (332)
196 2ftp_A Hydroxymethylglutaryl-C 57.8 41 0.0014 32.0 8.9 47 362-418 127-176 (302)
197 3eb2_A Putative dihydrodipicol 57.7 11 0.00038 36.1 5.0 109 234-383 17-140 (300)
198 2qiw_A PEP phosphonomutase; st 57.6 15 0.00052 34.9 5.8 103 160-280 96-203 (255)
199 3qze_A DHDPS, dihydrodipicolin 57.3 14 0.00046 35.8 5.5 115 234-383 36-159 (314)
200 3hv2_A Response regulator/HD d 57.3 69 0.0024 25.4 9.0 63 326-395 45-108 (153)
201 1o5k_A DHDPS, dihydrodipicolin 57.2 12 0.00042 35.8 5.2 107 236-383 27-148 (306)
202 3khj_A Inosine-5-monophosphate 57.2 16 0.00056 36.1 6.2 58 339-420 114-172 (361)
203 3inp_A D-ribulose-phosphate 3- 57.0 27 0.00092 33.1 7.4 94 321-420 35-140 (246)
204 4gie_A Prostaglandin F synthas 56.8 19 0.00064 33.9 6.3 186 149-375 30-223 (290)
205 2r25_B Osmosensing histidine p 56.5 44 0.0015 26.1 7.5 69 326-398 34-106 (133)
206 3b2n_A Uncharacterized protein 56.5 42 0.0014 26.0 7.4 67 325-398 35-102 (133)
207 2w6r_A Imidazole glycerol phos 56.1 17 0.0006 32.9 5.8 48 328-378 32-79 (266)
208 2qvg_A Two component response 55.9 28 0.00096 27.1 6.3 67 327-397 41-113 (143)
209 1rqb_A Transcarboxylase 5S sub 55.9 35 0.0012 35.9 8.7 126 147-304 108-246 (539)
210 3fa4_A 2,3-dimethylmalate lyas 55.8 60 0.002 31.8 9.8 102 158-280 96-205 (302)
211 1rqb_A Transcarboxylase 5S sub 55.8 2E+02 0.007 30.2 17.2 179 149-381 40-227 (539)
212 4dpp_A DHDPS 2, dihydrodipicol 55.7 52 0.0018 32.9 9.5 109 234-383 72-193 (360)
213 1y0e_A Putative N-acetylmannos 55.7 1.1E+02 0.0036 26.9 11.9 49 160-219 78-126 (223)
214 1f6k_A N-acetylneuraminate lya 55.6 12 0.00041 35.6 4.8 109 234-383 16-140 (293)
215 3daq_A DHDPS, dihydrodipicolin 55.4 12 0.00041 35.6 4.8 114 234-383 16-138 (292)
216 3bg3_A Pyruvate carboxylase, m 55.4 23 0.00077 38.6 7.4 120 159-303 199-330 (718)
217 3cfy_A Putative LUXO repressor 55.4 44 0.0015 26.2 7.5 66 326-398 35-101 (137)
218 3kcn_A Adenylate cyclase homol 55.0 77 0.0026 25.1 9.5 63 326-395 34-98 (151)
219 1zh2_A KDP operon transcriptio 54.9 33 0.0011 25.7 6.3 63 326-398 32-97 (121)
220 3bw2_A 2-nitropropane dioxygen 54.9 25 0.00086 34.1 7.0 49 326-378 153-213 (369)
221 1i3c_A Response regulator RCP1 54.7 78 0.0027 25.1 9.7 70 326-399 41-117 (149)
222 2nuw_A 2-keto-3-deoxygluconate 54.6 19 0.00064 34.2 5.9 112 234-383 12-133 (288)
223 1zgz_A Torcad operon transcrip 54.4 38 0.0013 25.5 6.6 65 327-398 34-98 (122)
224 3hdv_A Response regulator; PSI 54.0 43 0.0015 25.8 7.1 66 326-397 38-105 (136)
225 3qfe_A Putative dihydrodipicol 54.0 16 0.00055 35.4 5.5 109 235-384 25-150 (318)
226 3s5o_A 4-hydroxy-2-oxoglutarat 54.0 17 0.00057 34.9 5.5 109 234-383 27-152 (307)
227 1dbw_A Transcriptional regulat 53.8 50 0.0017 25.2 7.3 65 327-398 35-100 (126)
228 1jcn_A Inosine monophosphate d 53.5 13 0.00046 37.7 5.0 58 339-420 264-323 (514)
229 4fxs_A Inosine-5'-monophosphat 53.5 57 0.002 33.5 9.7 47 158-217 231-277 (496)
230 1tqj_A Ribulose-phosphate 3-ep 53.3 9.5 0.00032 35.0 3.6 62 338-420 130-200 (230)
231 2pln_A HP1043, response regula 53.3 51 0.0017 25.5 7.4 60 327-397 50-110 (137)
232 1w3i_A EDA, 2-keto-3-deoxy glu 53.1 22 0.00077 33.8 6.2 111 234-382 12-132 (293)
233 3cz5_A Two-component response 53.0 60 0.0021 25.7 7.9 94 325-430 37-137 (153)
234 2fli_A Ribulose-phosphate 3-ep 53.0 22 0.00077 31.2 5.8 48 323-378 13-66 (220)
235 1rpx_A Protein (ribulose-phosp 52.8 41 0.0014 30.0 7.6 53 323-378 20-73 (230)
236 2cw6_A Hydroxymethylglutaryl-C 52.7 51 0.0017 31.2 8.6 86 319-418 74-173 (298)
237 2rjn_A Response regulator rece 52.5 85 0.0029 24.8 9.7 63 326-395 38-101 (154)
238 4adt_A Pyridoxine biosynthetic 52.0 13 0.00045 36.2 4.5 56 321-380 24-85 (297)
239 2rdm_A Response regulator rece 51.9 28 0.00096 26.6 5.6 63 326-394 36-100 (132)
240 2oqr_A Sensory transduction pr 51.9 51 0.0017 28.1 7.8 80 327-413 36-121 (230)
241 3t7v_A Methylornithine synthas 51.8 1.3E+02 0.0043 28.5 11.2 33 254-286 288-337 (350)
242 1eep_A Inosine 5'-monophosphat 51.5 17 0.00058 35.8 5.3 59 339-420 162-221 (404)
243 1x1o_A Nicotinate-nucleotide p 51.4 20 0.00068 34.7 5.6 72 320-424 198-271 (286)
244 3usb_A Inosine-5'-monophosphat 51.3 75 0.0026 32.7 10.2 47 158-217 256-302 (511)
245 1dz3_A Stage 0 sporulation pro 50.7 54 0.0019 25.1 7.1 67 325-398 34-102 (130)
246 3mcm_A 2-amino-4-hydroxy-6-hyd 50.5 17 0.0006 37.5 5.3 103 309-422 197-323 (442)
247 2r91_A 2-keto-3-deoxy-(6-phosp 50.4 22 0.00076 33.6 5.7 109 236-382 13-131 (286)
248 3ceu_A Thiamine phosphate pyro 50.3 32 0.0011 30.7 6.5 68 326-418 96-169 (210)
249 3hbl_A Pyruvate carboxylase; T 50.2 3.2E+02 0.011 31.2 15.8 202 132-381 532-742 (1150)
250 3l12_A Putative glycerophospho 50.2 25 0.00086 33.3 6.1 63 342-432 245-307 (313)
251 1vrd_A Inosine-5'-monophosphat 50.1 21 0.00072 35.9 5.8 57 339-420 246-305 (494)
252 3h1g_A Chemotaxis protein CHEY 50.0 59 0.002 25.0 7.3 64 327-396 38-104 (129)
253 3dz1_A Dihydrodipicolinate syn 49.9 18 0.00061 34.9 5.0 108 234-383 21-144 (313)
254 2qsj_A DNA-binding response re 49.9 85 0.0029 24.7 8.3 67 326-398 36-103 (154)
255 3fkr_A L-2-keto-3-deoxyarabona 49.8 23 0.00078 34.1 5.7 107 234-382 21-146 (309)
256 4avf_A Inosine-5'-monophosphat 49.7 22 0.00076 36.4 6.0 57 340-419 239-296 (490)
257 2nv1_A Pyridoxal biosynthesis 49.1 18 0.00063 34.2 4.9 48 159-210 30-77 (305)
258 3kto_A Response regulator rece 49.1 39 0.0014 26.3 6.2 51 341-398 49-105 (136)
259 3qja_A IGPS, indole-3-glycerol 49.0 43 0.0015 31.9 7.4 164 159-420 74-241 (272)
260 3f6c_A Positive transcription 49.0 49 0.0017 25.3 6.6 65 327-398 34-99 (134)
261 2oog_A Glycerophosphoryl diest 48.9 33 0.0011 32.0 6.5 50 362-432 231-280 (287)
262 3usb_A Inosine-5'-monophosphat 48.8 23 0.0008 36.4 6.0 61 332-419 258-323 (511)
263 3i7m_A XAA-Pro dipeptidase; st 48.7 11 0.00037 31.1 2.9 36 267-303 1-37 (140)
264 1qkk_A DCTD, C4-dicarboxylate 48.5 46 0.0016 26.4 6.6 65 327-398 35-100 (155)
265 3a5f_A Dihydrodipicolinate syn 48.4 12 0.0004 35.6 3.5 108 234-383 15-137 (291)
266 2z6i_A Trans-2-enoyl-ACP reduc 48.4 35 0.0012 32.6 6.8 38 340-378 128-167 (332)
267 4avf_A Inosine-5'-monophosphat 48.3 1.2E+02 0.004 31.0 11.0 68 158-264 229-296 (490)
268 4h17_A Hydrolase, isochorismat 48.2 32 0.0011 30.7 6.1 78 166-267 118-195 (197)
269 3oa3_A Aldolase; structural ge 47.8 98 0.0033 30.3 9.9 186 62-282 23-230 (288)
270 1s2w_A Phosphoenolpyruvate pho 47.6 1.9E+02 0.0064 28.0 11.8 104 158-281 95-207 (295)
271 2gkg_A Response regulator homo 47.6 58 0.002 24.3 6.7 62 327-396 37-102 (127)
272 1ydo_A HMG-COA lyase; TIM-barr 47.5 41 0.0014 32.4 7.1 87 318-418 74-174 (307)
273 3r0j_A Possible two component 47.5 1.2E+02 0.0041 26.5 9.7 78 327-411 55-139 (250)
274 1vcv_A Probable deoxyribose-ph 47.5 76 0.0026 29.7 8.7 132 239-423 13-152 (226)
275 3lua_A Response regulator rece 47.4 48 0.0017 25.8 6.4 62 327-397 37-105 (140)
276 3ilh_A Two component response 47.2 61 0.0021 25.0 6.9 66 326-395 42-114 (146)
277 3ks6_A Glycerophosphoryl diest 47.1 31 0.0011 31.6 6.0 122 270-432 116-243 (250)
278 2nql_A AGR_PAT_674P, isomerase 47.0 67 0.0023 31.3 8.7 135 244-420 164-315 (388)
279 3o07_A Pyridoxine biosynthesis 47.0 14 0.00048 36.5 3.8 44 324-378 121-203 (291)
280 3gr7_A NADPH dehydrogenase; fl 46.6 34 0.0012 33.3 6.5 94 159-267 146-250 (340)
281 3h5i_A Response regulator/sens 46.6 25 0.00084 27.7 4.6 65 326-396 36-101 (140)
282 1mvo_A PHOP response regulator 46.6 39 0.0013 26.0 5.7 65 327-398 35-100 (136)
283 2hmc_A AGR_L_411P, dihydrodipi 46.4 25 0.00087 34.6 5.6 55 327-382 103-160 (344)
284 1nvm_A HOA, 4-hydroxy-2-oxoval 46.3 67 0.0023 31.1 8.5 78 160-270 96-173 (345)
285 3m6m_D Sensory/regulatory prot 46.2 80 0.0027 25.0 7.7 65 327-398 46-115 (143)
286 1s8n_A Putative antiterminator 45.9 43 0.0015 28.2 6.3 66 326-398 45-110 (205)
287 1p6q_A CHEY2; chemotaxis, sign 45.9 42 0.0014 25.5 5.7 66 326-398 38-106 (129)
288 2qf7_A Pyruvate carboxylase pr 45.9 51 0.0017 37.6 8.6 223 159-423 647-896 (1165)
289 2c6q_A GMP reductase 2; TIM ba 45.7 31 0.0011 33.9 6.0 61 334-418 122-186 (351)
290 3hzh_A Chemotaxis response reg 45.2 83 0.0028 25.2 7.7 66 326-396 68-134 (157)
291 2r14_A Morphinone reductase; H 45.2 55 0.0019 32.4 7.8 188 158-400 167-367 (377)
292 1xi3_A Thiamine phosphate pyro 45.0 33 0.0011 29.7 5.6 69 327-419 117-188 (215)
293 3dmp_A Uracil phosphoribosyltr 45.0 28 0.00097 32.4 5.4 48 158-223 144-193 (217)
294 1rd5_A Tryptophan synthase alp 44.8 18 0.0006 33.3 3.9 18 361-378 82-99 (262)
295 3nwr_A A rubisco-like protein; 44.7 18 0.00062 37.3 4.3 137 243-420 174-318 (432)
296 3ajx_A 3-hexulose-6-phosphate 44.6 20 0.00068 31.3 4.1 85 323-419 7-108 (207)
297 3qvq_A Phosphodiesterase OLEI0 44.4 39 0.0013 30.9 6.2 64 341-432 186-249 (252)
298 1ypf_A GMP reductase; GUAC, pu 44.1 36 0.0012 32.8 6.2 65 332-420 108-176 (336)
299 3inp_A D-ribulose-phosphate 3- 43.9 2.1E+02 0.0072 26.9 13.2 98 158-290 41-139 (246)
300 3vgf_A Malto-oligosyltrehalose 43.9 1.4E+02 0.0046 30.7 10.7 121 158-284 120-277 (558)
301 3uw2_A Phosphoglucomutase/phos 43.8 1.7E+02 0.006 29.8 11.5 91 166-267 214-307 (485)
302 1bd3_D Uprtase, uracil phospho 43.6 31 0.0011 32.7 5.5 49 158-224 171-221 (243)
303 3k13_A 5-methyltetrahydrofolat 43.5 52 0.0018 32.1 7.2 94 326-422 34-141 (300)
304 2r91_A 2-keto-3-deoxy-(6-phosp 43.3 1.7E+02 0.0058 27.5 10.6 109 152-295 15-130 (286)
305 3rqi_A Response regulator prot 43.2 52 0.0018 27.5 6.4 65 327-398 39-104 (184)
306 2qgy_A Enolase from the enviro 43.1 1.4E+02 0.0046 29.2 10.2 114 244-398 149-270 (391)
307 1w6t_A Enolase; bacterial infe 43.0 23 0.00078 35.8 4.7 127 271-419 227-379 (444)
308 2yzr_A Pyridoxal biosynthesis 43.0 28 0.00096 34.8 5.3 79 340-422 35-149 (330)
309 2o55_A Putative glycerophospho 42.9 43 0.0015 30.6 6.2 68 341-432 188-255 (258)
310 3t8y_A CHEB, chemotaxis respon 42.5 61 0.0021 26.4 6.5 64 326-396 58-123 (164)
311 3vnd_A TSA, tryptophan synthas 42.3 53 0.0018 31.3 7.0 58 360-418 81-152 (267)
312 3grc_A Sensor protein, kinase; 42.3 95 0.0032 23.9 7.4 64 327-397 38-105 (140)
313 1tqx_A D-ribulose-5-phosphate 42.2 27 0.00092 32.5 4.8 59 334-419 128-199 (227)
314 2poz_A Putative dehydratase; o 41.9 1.6E+02 0.0054 28.6 10.4 85 327-420 211-307 (392)
315 3kts_A Glycerol uptake operon 41.9 25 0.00087 32.5 4.5 158 160-421 19-179 (192)
316 1jub_A Dihydroorotate dehydrog 41.8 60 0.002 30.4 7.2 66 340-420 117-191 (311)
317 2gou_A Oxidoreductase, FMN-bin 41.7 67 0.0023 31.6 7.7 186 158-400 162-361 (365)
318 1icp_A OPR1, 12-oxophytodienoa 41.3 55 0.0019 32.3 7.1 189 158-400 168-370 (376)
319 3ist_A Glutamate racemase; str 40.7 52 0.0018 31.2 6.6 138 202-354 20-187 (269)
320 1vcf_A Isopentenyl-diphosphate 40.4 74 0.0025 30.4 7.7 40 339-378 202-261 (332)
321 2nx9_A Oxaloacetate decarboxyl 40.2 3.2E+02 0.011 28.0 17.4 179 148-381 22-208 (464)
322 1xm3_A Thiazole biosynthesis p 40.2 53 0.0018 30.7 6.5 59 340-419 145-205 (264)
323 4dad_A Putative pilus assembly 40.1 48 0.0016 26.0 5.4 50 341-397 66-119 (146)
324 3gka_A N-ethylmaleimide reduct 40.0 1.1E+02 0.0038 30.2 9.1 182 158-400 162-355 (361)
325 1mb3_A Cell division response 39.9 63 0.0021 24.3 5.8 62 327-395 33-97 (124)
326 1eep_A Inosine 5'-monophosphat 39.8 1.6E+02 0.0056 28.8 10.2 46 159-217 154-199 (404)
327 2yyu_A Orotidine 5'-phosphate 39.4 28 0.00095 32.2 4.4 42 320-371 8-54 (246)
328 3o07_A Pyridoxine biosynthesis 39.3 64 0.0022 31.9 7.0 51 320-381 13-76 (291)
329 3r2g_A Inosine 5'-monophosphat 39.0 40 0.0014 33.7 5.8 45 333-381 103-149 (361)
330 2zsk_A PH1733, 226AA long hypo 39.0 2.1E+02 0.0072 25.5 11.8 27 393-419 163-190 (226)
331 3hg3_A Alpha-galactosidase A; 39.0 1.3E+02 0.0044 30.6 9.5 110 158-285 37-165 (404)
332 3b4u_A Dihydrodipicolinate syn 38.9 36 0.0012 32.3 5.2 115 234-383 16-143 (294)
333 3ovp_A Ribulose-phosphate 3-ep 38.7 48 0.0017 30.5 5.9 93 321-420 12-118 (228)
334 2ze0_A Alpha-glucosidase; TIM 38.6 46 0.0016 34.0 6.2 61 157-223 31-103 (555)
335 2gl5_A Putative dehydratase pr 38.4 1.8E+02 0.0062 28.3 10.2 87 327-422 230-328 (410)
336 3m5v_A DHDPS, dihydrodipicolin 38.3 1.7E+02 0.0058 27.8 9.8 110 152-294 24-141 (301)
337 3tfx_A Orotidine 5'-phosphate 38.3 29 0.00099 33.2 4.4 47 322-378 10-61 (259)
338 2fli_A Ribulose-phosphate 3-ep 38.2 30 0.001 30.4 4.2 60 340-420 129-197 (220)
339 1f76_A Dihydroorotate dehydrog 38.1 39 0.0013 32.1 5.3 42 361-421 275-318 (336)
340 1lt8_A Betaine-homocysteine me 38.1 14 0.00048 37.5 2.3 24 398-421 51-74 (406)
341 2ovl_A Putative racemase; stru 37.8 75 0.0026 30.7 7.3 114 244-398 146-267 (371)
342 3jr2_A Hexulose-6-phosphate sy 37.8 44 0.0015 29.9 5.3 61 201-284 48-109 (218)
343 3exr_A RMPD (hexulose-6-phosph 37.8 14 0.00048 33.9 2.1 63 322-395 11-82 (221)
344 2pz0_A Glycerophosphoryl diest 37.7 42 0.0014 30.7 5.3 63 342-432 188-250 (252)
345 3w01_A Heptaprenylglyceryl pho 37.7 21 0.00072 33.9 3.3 52 323-381 18-74 (235)
346 1s4d_A Uroporphyrin-III C-meth 37.5 86 0.0029 29.3 7.5 87 193-285 25-121 (280)
347 3lmz_A Putative sugar isomeras 37.5 1E+02 0.0035 27.3 7.7 37 255-291 39-81 (257)
348 3c2e_A Nicotinate-nucleotide p 37.4 39 0.0013 32.6 5.2 66 199-291 185-253 (294)
349 4ab4_A Xenobiotic reductase B; 37.3 1.2E+02 0.0041 30.0 8.8 180 159-399 155-346 (362)
350 2xwp_A Sirohydrochlorin cobalt 37.3 1.8E+02 0.006 26.9 9.5 125 158-294 61-201 (264)
351 2gwr_A DNA-binding response re 37.2 45 0.0015 29.0 5.2 79 327-412 37-121 (238)
352 3m47_A Orotidine 5'-phosphate 37.1 2.1E+02 0.007 26.2 9.9 63 201-284 54-117 (228)
353 2ox4_A Putative mandelate race 36.9 2.2E+02 0.0074 27.7 10.5 141 241-422 143-319 (403)
354 1mdl_A Mandelate racemase; iso 36.9 1.1E+02 0.0038 29.2 8.3 114 244-398 144-265 (359)
355 1qo2_A Molecule: N-((5-phospho 36.6 53 0.0018 29.5 5.7 163 158-378 31-193 (241)
356 1ua7_A Alpha-amylase; beta-alp 36.5 35 0.0012 33.4 4.8 107 153-263 14-170 (422)
357 1ydn_A Hydroxymethylglutaryl-C 36.5 59 0.002 30.5 6.2 50 151-212 150-199 (295)
358 1jub_A Dihydroorotate dehydrog 36.3 63 0.0022 30.2 6.4 41 362-421 229-271 (311)
359 3m07_A Putative alpha amylase; 36.3 49 0.0017 34.8 6.1 124 154-283 152-309 (618)
360 2gjl_A Hypothetical protein PA 36.1 86 0.0029 29.7 7.3 40 339-378 135-177 (328)
361 4af0_A Inosine-5'-monophosphat 36.1 57 0.0019 34.9 6.6 61 332-419 283-348 (556)
362 3hbl_A Pyruvate carboxylase; T 36.0 62 0.0021 36.9 7.2 219 159-419 629-874 (1150)
363 2jk1_A HUPR, hydrogenase trans 35.7 85 0.0029 24.4 6.2 63 326-395 31-94 (139)
364 2i1o_A Nicotinate phosphoribos 35.6 73 0.0025 32.1 7.0 66 200-290 197-273 (398)
365 4gqr_A Pancreatic alpha-amylas 35.5 35 0.0012 32.8 4.5 70 152-224 18-102 (496)
366 1rpx_A Protein (ribulose-phosp 35.5 40 0.0014 30.1 4.6 60 340-420 138-206 (230)
367 4e38_A Keto-hydroxyglutarate-a 35.2 27 0.00093 32.9 3.6 90 143-255 127-229 (232)
368 1jbe_A Chemotaxis protein CHEY 34.9 1.4E+02 0.0049 22.4 9.1 65 327-398 37-104 (128)
369 3uhf_A Glutamate racemase; str 34.8 47 0.0016 31.8 5.3 163 202-392 39-236 (274)
370 4aie_A Glucan 1,6-alpha-glucos 34.6 54 0.0019 32.3 5.9 60 158-223 33-104 (549)
371 2cw6_A Hydroxymethylglutaryl-C 34.6 50 0.0017 31.2 5.4 91 160-270 83-180 (298)
372 3n53_A Response regulator rece 34.6 50 0.0017 25.7 4.6 63 326-398 33-101 (140)
373 3ldv_A Orotidine 5'-phosphate 34.6 24 0.00081 33.7 3.2 48 320-378 31-83 (255)
374 1ydo_A HMG-COA lyase; TIM-barr 34.4 49 0.0017 31.8 5.4 140 161-351 85-235 (307)
375 2hqr_A Putative transcriptiona 34.3 87 0.003 26.6 6.4 77 326-413 31-115 (223)
376 1a04_A Nitrate/nitrite respons 34.2 1.1E+02 0.0039 25.7 7.1 81 325-412 37-124 (215)
377 1vc4_A Indole-3-glycerol phosp 34.1 1.2E+02 0.0041 28.3 7.9 54 340-419 76-133 (254)
378 1vcf_A Isopentenyl-diphosphate 33.7 1E+02 0.0035 29.4 7.5 93 306-420 112-211 (332)
379 2b7n_A Probable nicotinate-nuc 33.7 33 0.0011 32.6 4.0 88 297-420 164-256 (273)
380 4adt_A Pyridoxine biosynthetic 33.6 56 0.0019 31.7 5.7 54 160-218 31-84 (297)
381 4djd_D C/Fe-SP, corrinoid/iron 33.5 55 0.0019 32.4 5.6 79 339-420 91-186 (323)
382 1vhn_A Putative flavin oxidore 33.3 82 0.0028 29.9 6.7 46 361-420 114-159 (318)
383 3q9s_A DNA-binding response re 33.0 64 0.0022 28.7 5.6 77 326-412 68-153 (249)
384 3bre_A Probable two-component 32.9 1.1E+02 0.0037 28.2 7.2 68 325-399 49-119 (358)
385 1vhc_A Putative KHG/KDPG aldol 32.7 46 0.0016 30.7 4.7 50 144-215 111-160 (224)
386 3aj7_A Oligo-1,6-glucosidase; 32.7 67 0.0023 33.3 6.4 61 158-224 41-113 (589)
387 3q58_A N-acetylmannosamine-6-p 32.6 1.4E+02 0.0049 27.4 8.0 36 332-378 38-74 (229)
388 1xky_A Dihydrodipicolinate syn 32.6 1.9E+02 0.0067 27.4 9.2 109 153-294 30-145 (301)
389 3tha_A Tryptophan synthase alp 32.5 92 0.0032 29.7 6.9 166 158-378 29-204 (252)
390 3b0p_A TRNA-dihydrouridine syn 32.4 88 0.003 30.4 6.9 38 340-378 155-202 (350)
391 1jcn_A Inosine monophosphate d 32.4 97 0.0033 31.4 7.4 47 158-217 255-301 (514)
392 1ep3_A Dihydroorotate dehydrog 32.2 1.5E+02 0.0051 27.3 8.1 39 362-420 230-269 (311)
393 3no5_A Uncharacterized protein 32.2 41 0.0014 32.4 4.4 56 153-216 27-82 (275)
394 2yxg_A DHDPS, dihydrodipicolin 31.9 2.9E+02 0.0099 25.9 10.2 110 152-294 17-133 (289)
395 2ftp_A Hydroxymethylglutaryl-C 31.9 35 0.0012 32.4 3.9 90 160-269 86-182 (302)
396 1kgs_A DRRD, DNA binding respo 31.8 1E+02 0.0034 26.1 6.4 79 327-412 34-119 (225)
397 3c3w_A Two component transcrip 31.6 1.3E+02 0.0043 26.0 7.1 67 325-398 33-100 (225)
398 2ehh_A DHDPS, dihydrodipicolin 31.6 2.7E+02 0.0094 26.2 10.0 110 152-294 17-133 (294)
399 1m53_A Isomaltulose synthase; 31.5 72 0.0025 32.7 6.4 61 158-224 46-118 (570)
400 1me8_A Inosine-5'-monophosphat 31.3 1.7E+02 0.0057 29.9 9.0 46 158-216 242-288 (503)
401 2zic_A Dextran glucosidase; TI 31.3 67 0.0023 32.7 6.1 99 158-263 32-191 (543)
402 2nv1_A Pyridoxal biosynthesis 31.1 88 0.003 29.5 6.5 19 360-378 65-83 (305)
403 3lop_A Substrate binding perip 31.1 55 0.0019 30.0 4.9 91 279-379 135-228 (364)
404 2qr6_A IMP dehydrogenase/GMP r 30.9 96 0.0033 30.3 6.9 60 340-420 176-238 (393)
405 1tv5_A Dhodehase, dihydroorota 30.9 91 0.0031 31.9 6.9 42 361-421 359-402 (443)
406 3nhm_A Response regulator; pro 30.9 1.7E+02 0.0059 22.1 7.6 63 326-396 34-99 (133)
407 1m7x_A 1,4-alpha-glucan branch 30.8 96 0.0033 32.3 7.2 126 127-263 131-291 (617)
408 3cu5_A Two component transcrip 30.6 88 0.003 24.6 5.5 67 325-398 35-102 (141)
409 3zwt_A Dihydroorotate dehydrog 30.6 1.5E+02 0.0053 29.2 8.3 77 328-419 162-252 (367)
410 3no3_A Glycerophosphodiester p 30.5 58 0.002 29.7 4.9 117 272-432 116-235 (238)
411 3ngj_A Deoxyribose-phosphate a 30.4 1E+02 0.0035 29.3 6.7 127 240-422 40-180 (239)
412 2nuw_A 2-keto-3-deoxygluconate 30.4 2E+02 0.007 27.0 8.9 108 153-295 17-131 (288)
413 3kyj_B CHEY6 protein, putative 30.2 71 0.0024 25.0 4.9 67 324-396 44-112 (145)
414 1jfl_A Aspartate racemase; alp 30.2 31 0.0011 31.0 3.0 60 309-376 39-100 (228)
415 1zcc_A Glycerophosphodiester p 30.2 49 0.0017 30.2 4.4 64 340-431 168-233 (248)
416 3flu_A DHDPS, dihydrodipicolin 30.0 2.5E+02 0.0087 26.5 9.5 110 152-294 24-140 (297)
417 1p2f_A Response regulator; DRR 29.9 69 0.0024 27.2 5.1 79 326-413 32-117 (220)
418 3k1d_A 1,4-alpha-glucan-branch 29.9 89 0.003 33.9 7.0 104 154-263 261-399 (722)
419 2oho_A Glutamate racemase; iso 29.8 95 0.0033 28.9 6.4 135 201-347 26-189 (273)
420 2otd_A Glycerophosphodiester p 29.7 19 0.00066 32.6 1.6 62 342-431 184-245 (247)
421 3vk5_A MOEO5; TIM barrel, tran 29.7 50 0.0017 32.5 4.5 55 321-378 43-101 (286)
422 2pcq_A Putative dihydrodipicol 29.7 54 0.0018 31.0 4.7 55 326-383 72-128 (283)
423 2jba_A Phosphate regulon trans 29.6 43 0.0015 25.3 3.4 53 342-398 46-101 (127)
424 2wkj_A N-acetylneuraminate lya 29.4 2.5E+02 0.0085 26.7 9.4 110 153-294 29-145 (303)
425 3out_A Glutamate racemase; str 29.3 1E+02 0.0035 29.1 6.5 138 202-354 22-187 (268)
426 3kru_A NADH:flavin oxidoreduct 29.2 1.2E+02 0.0041 29.7 7.2 93 159-266 145-249 (343)
427 1vpx_A Protein (transaldolase 29.2 36 0.0012 32.1 3.4 42 250-292 125-174 (230)
428 2nli_A Lactate oxidase; flavoe 29.1 1E+02 0.0034 30.4 6.7 39 340-378 248-289 (368)
429 2r8w_A AGR_C_1641P; APC7498, d 29.1 2.6E+02 0.0089 27.1 9.6 109 153-294 52-167 (332)
430 1w3i_A EDA, 2-keto-3-deoxy glu 29.0 2.4E+02 0.0081 26.6 9.1 108 153-295 17-131 (293)
431 1o5k_A DHDPS, dihydrodipicolin 28.9 2.2E+02 0.0074 27.2 8.8 111 152-295 29-146 (306)
432 3hh1_A Tetrapyrrole methylase 28.8 58 0.002 26.6 4.2 84 194-285 17-109 (117)
433 2nzl_A Hydroxyacid oxidase 1; 28.7 78 0.0027 31.6 5.9 78 321-419 151-278 (392)
434 3p6l_A Sugar phosphate isomera 28.7 2.2E+02 0.0076 25.0 8.3 92 255-383 31-138 (262)
435 1qap_A Quinolinic acid phospho 28.6 1.3E+02 0.0045 29.1 7.3 89 297-422 191-281 (296)
436 3m47_A Orotidine 5'-phosphate 28.6 32 0.0011 31.7 2.8 45 323-377 19-68 (228)
437 1rvk_A Isomerase/lactonizing e 28.6 1.4E+02 0.0049 28.7 7.6 139 244-422 149-311 (382)
438 3lab_A Putative KDPG (2-keto-3 28.5 38 0.0013 31.8 3.4 51 145-217 114-164 (217)
439 3aty_A Tcoye, prostaglandin F2 28.3 1E+02 0.0036 30.5 6.7 99 158-267 175-287 (379)
440 2v9d_A YAGE; dihydrodipicolini 28.3 2.1E+02 0.0073 27.8 8.8 110 153-295 49-165 (343)
441 1vyr_A Pentaerythritol tetrani 28.1 2.1E+02 0.007 28.1 8.7 100 158-267 162-272 (364)
442 1zja_A Trehalulose synthase; s 28.1 90 0.0031 31.8 6.4 62 157-224 32-105 (557)
443 3mm4_A Histidine kinase homolo 28.1 1.6E+02 0.0054 25.2 7.1 51 327-381 94-159 (206)
444 1o5o_A Uracil phosphoribosyltr 28.1 94 0.0032 28.9 6.0 44 158-218 151-194 (221)
445 1f6y_A 5-methyltetrahydrofolat 28.1 1.1E+02 0.0037 29.0 6.4 94 326-422 22-124 (262)
446 1bf2_A Isoamylase; hydrolase, 28.0 1.4E+02 0.0048 32.0 8.1 131 128-263 179-372 (750)
447 1ub3_A Aldolase protein; schif 27.9 1.3E+02 0.0046 27.7 7.0 81 158-267 72-154 (220)
448 2wnw_A Activated by transcript 27.9 2.3E+02 0.0077 28.6 9.2 92 201-295 125-240 (447)
449 2jfq_A Glutamate racemase; cel 27.9 93 0.0032 29.4 6.0 165 202-390 37-234 (286)
450 1wx0_A Transaldolase; structur 27.8 49 0.0017 30.9 4.0 44 249-293 121-172 (223)
451 1p4c_A L(+)-mandelate dehydrog 27.8 66 0.0023 31.8 5.2 27 352-379 205-231 (380)
452 1l6w_A Fructose-6-phosphate al 27.7 40 0.0014 31.5 3.4 43 249-292 114-164 (220)
453 3i65_A Dihydroorotate dehydrog 27.7 66 0.0023 32.9 5.2 78 323-421 276-374 (415)
454 3apt_A Methylenetetrahydrofola 27.7 4.2E+02 0.014 25.5 11.9 115 158-291 87-205 (310)
455 3vzx_A Heptaprenylglyceryl pho 27.7 28 0.00096 32.8 2.3 42 330-378 22-64 (228)
456 3cwn_A Transaldolase B; direct 27.5 62 0.0021 32.1 4.9 22 249-273 181-202 (337)
457 4g9p_A 4-hydroxy-3-methylbut-2 27.4 41 0.0014 34.6 3.7 49 239-292 35-86 (406)
458 4ekj_A Beta-xylosidase; TIM-ba 27.3 4.4E+02 0.015 25.6 11.4 33 148-181 76-108 (500)
459 3tr2_A Orotidine 5'-phosphate 27.2 45 0.0015 31.3 3.6 46 322-378 14-64 (239)
460 3i42_A Response regulator rece 27.1 62 0.0021 24.6 3.9 50 327-383 35-87 (127)
461 2bmb_A Folic acid synthesis pr 27.1 79 0.0027 33.5 5.8 106 308-420 230-362 (545)
462 3iix_A Biotin synthetase, puta 26.9 3.7E+02 0.013 24.9 9.9 54 317-377 78-134 (348)
463 3cpr_A Dihydrodipicolinate syn 26.5 3.8E+02 0.013 25.4 10.1 110 153-295 34-150 (304)
464 3bo9_A Putative nitroalkan dio 26.5 1.1E+02 0.0039 29.2 6.4 38 340-378 142-181 (326)
465 3tak_A DHDPS, dihydrodipicolin 26.5 2.8E+02 0.0095 26.1 9.0 110 152-294 18-134 (291)
466 2ayx_A Sensor kinase protein R 26.4 2.6E+02 0.0087 24.9 8.4 64 327-397 161-225 (254)
467 1xm3_A Thiazole biosynthesis p 26.3 48 0.0016 31.0 3.7 84 342-429 36-142 (264)
468 1zuw_A Glutamate racemase 1; ( 26.3 1.3E+02 0.0044 28.1 6.6 89 202-303 18-128 (272)
469 1uok_A Oligo-1,6-glucosidase; 26.3 87 0.003 31.9 5.8 60 158-223 32-103 (558)
470 3qze_A DHDPS, dihydrodipicolin 26.1 2.8E+02 0.0096 26.6 9.1 110 152-294 40-156 (314)
471 1lwj_A 4-alpha-glucanotransfer 26.0 1.2E+02 0.0041 29.6 6.6 61 157-224 23-95 (441)
472 3chv_A Prokaryotic domain of u 26.0 61 0.0021 31.4 4.4 57 153-217 31-87 (284)
473 2i14_A Nicotinate-nucleotide p 25.9 1.6E+02 0.0055 29.5 7.6 68 199-291 193-272 (395)
474 1xtt_A Probable uracil phospho 25.9 67 0.0023 29.8 4.5 47 158-223 148-195 (216)
475 1vd6_A Glycerophosphoryl diest 25.8 61 0.0021 29.0 4.2 61 341-429 162-222 (224)
476 1dbt_A Orotidine 5'-phosphate 25.7 68 0.0023 29.3 4.5 45 201-267 45-89 (239)
477 1p4c_A L(+)-mandelate dehydrog 25.7 78 0.0027 31.3 5.2 39 340-378 244-283 (380)
478 2hsa_B 12-oxophytodienoate red 25.7 1.3E+02 0.0045 30.0 6.9 196 158-400 172-388 (402)
479 1gox_A (S)-2-hydroxy-acid oxid 25.6 1.4E+02 0.0047 29.2 7.0 39 340-378 244-285 (370)
480 1jvn_A Glutamine, bifunctional 25.5 1.1E+02 0.0037 31.8 6.5 68 339-420 290-366 (555)
481 2rfg_A Dihydrodipicolinate syn 25.2 2.7E+02 0.0091 26.4 8.7 110 152-294 17-133 (297)
482 3lkb_A Probable branched-chain 25.0 32 0.0011 31.9 2.2 56 327-391 186-242 (392)
483 1ydn_A Hydroxymethylglutaryl-C 25.0 86 0.0029 29.4 5.2 91 160-269 82-178 (295)
484 2yyu_A Orotidine 5'-phosphate 25.0 72 0.0025 29.3 4.6 164 201-420 46-214 (246)
485 1rcu_A Conserved hypothetical 24.9 1.3E+02 0.0045 27.5 6.2 125 243-400 42-171 (195)
486 2j48_A Two-component sensor ki 24.9 99 0.0034 22.4 4.5 50 327-383 33-85 (119)
487 3iix_A Biotin synthetase, puta 24.9 1.1E+02 0.0037 28.6 5.8 50 149-209 80-129 (348)
488 2v82_A 2-dehydro-3-deoxy-6-pho 24.8 1.5E+02 0.005 25.9 6.4 88 327-421 17-108 (212)
489 3dhu_A Alpha-amylase; structur 24.8 1.3E+02 0.0043 29.5 6.5 123 158-283 31-192 (449)
490 1yio_A Response regulatory pro 24.8 1E+02 0.0034 25.8 5.1 65 327-398 36-101 (208)
491 1tv5_A Dhodehase, dihydroorota 24.6 2.8E+02 0.0097 28.3 9.3 44 327-371 194-244 (443)
492 1vcv_A Probable deoxyribose-ph 24.6 3.4E+02 0.012 25.3 9.1 103 158-291 68-188 (226)
493 2r14_A Morphinone reductase; H 24.6 1E+02 0.0036 30.4 5.9 111 241-378 161-304 (377)
494 1gte_A Dihydropyrimidine dehyd 24.5 2.4E+02 0.0083 31.2 9.3 64 340-420 659-734 (1025)
495 1dbt_A Orotidine 5'-phosphate 24.5 53 0.0018 30.0 3.5 40 322-371 9-53 (239)
496 3hjz_A Transaldolase B; parach 24.4 30 0.001 34.5 2.0 18 248-265 164-181 (334)
497 3sr7_A Isopentenyl-diphosphate 24.4 86 0.003 31.2 5.3 44 360-420 193-236 (365)
498 3lrk_A Alpha-galactosidase 1; 24.3 2.7E+02 0.0094 29.0 9.2 108 158-285 48-179 (479)
499 1v9s_A Uracil phosphoribosyltr 24.3 99 0.0034 28.5 5.3 48 158-223 138-185 (208)
500 1ccw_A Protein (glutamate muta 24.1 57 0.0019 27.5 3.4 93 242-373 40-135 (137)
No 1
>1w5q_A Delta-aminolevulinic acid dehydratase; synthase, evolution, metalloenzyme, porphobilinogen synthase, protein engineering,; 1.4A {Pseudomonas aeruginosa} PDB: 1w5p_A* 1w5o_A 1w5n_A 1w56_A 1w5m_A 1w54_A 1gzg_A* 1b4k_A 2woq_A* 2c14_A* 2c16_A* 2c19_A* 2c15_A* 2c18_A* 2c13_A*
Probab=100.00 E-value=9.5e-158 Score=1159.62 Aligned_cols=331 Identities=44% Similarity=0.739 Sum_probs=313.6
Q ss_pred CCCCcccCCCCCCCCCCCCCChHHHhhhhcCCCCCCCceeeEEEeeCCC-CcccCCCCCceeechhhhHHHHHHHHHHcC
Q 013861 92 AGTPVVPSLPLSRRPRRNRKSPAMRASFQETNLSPANFVYPLFIHEGEE-DTPIGAMPGCYRLGWRHGLVQEVAKARDVG 170 (435)
Q Consensus 92 ~g~p~~~~l~~~~R~RRlR~~~~~R~l~~Et~L~~~~LI~PlFV~eg~~-~~~I~sMPGv~r~s~~~~l~~~v~~~~~~G 170 (435)
.|||...|++. +||||||+|+++|+|++||+|+++||||||||+||++ ++||+|||||||||++ .|++++++++++|
T Consensus 2 ~~tp~~~~~p~-~R~RRlR~~~~~R~lv~Et~L~~~dLI~PlFV~eg~~~~~~I~SMPGv~r~sid-~l~~~~~~~~~lG 79 (337)
T 1w5q_A 2 SFTPANRAYPY-TRLRRNRRDDFSRRLVRENVLTVDDLILPVFVLDGVNQRESIPSMPGVERLSID-QLLIEAEEWVALG 79 (337)
T ss_dssp ----CCCCTTT-CCTTTTTSSHHHHHHHCCCCCCGGGEEEEEEEESSSSCEEECTTSTTCEEEEHH-HHHHHHHHHHHTT
T ss_pred CCCccCCCCCC-CCCCcCCCChHHHHHHhcCCCCHHHceeeEEEecCCCCccccCCCCCceeeCHH-HHHHHHHHHHHCC
Confidence 58999999996 7999999999999999999999999999999999996 6899999999999997 6999999999999
Q ss_pred CCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHH
Q 013861 171 VNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCK 250 (435)
Q Consensus 171 I~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTshGHcGIv~e~g~IdND~Tv~~Lak 250 (435)
|++|+|||++|+.+||+.||+|||+||++|||||.||++||||+|||||||||||+||||||++++|+|+||+||++|++
T Consensus 80 i~~v~LFgv~~~~~KD~~gs~A~~~~g~v~rair~iK~~~pdl~vitDvcLc~YT~HGHcGil~~~g~V~ND~Tl~~L~k 159 (337)
T 1w5q_A 80 IPALALFPVTPVEKKSLDAAEAYNPEGIAQRATRALRERFPELGIITDVCLCEFTTHGQCGILDDDGYVLNDVSIDVLVR 159 (337)
T ss_dssp CCEEEEEECCCGGGCBSSCGGGGCTTSHHHHHHHHHHHHCTTSEEEEEECSTTTBTTCCSSCBCTTSCBCHHHHHHHHHH
T ss_pred CCEEEEecCCCcccCCcccCccCCCCChHHHHHHHHHHHCCCeEEEEeeecccCCCCCcceeeCCCCcCccHHHHHHHHH
Confidence 99999999878767999999999999999999999999999999999999999999999999976899999999999999
Q ss_pred HHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCCCceeechhhhhcccccccchhhhcCCCCC--CCccccCCCCCCH
Q 013861 251 QAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRF--GDKKTYQMNPANY 328 (435)
Q Consensus 251 ~Avs~A~AGADiVAPSDMMDGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRdA~~Sap~f--gDRktYQmdp~N~ 328 (435)
|||+||+||||||||||||||||++||++||++||+||+|||||+||||+||||||||++|+|+| ||||||||||+|+
T Consensus 160 ~Als~A~AGADiVAPSdMMDGrV~aIR~aLd~~G~~~v~ImsYsaKyASafYGPFRdAa~Sap~f~~GDrktYQmdpaN~ 239 (337)
T 1w5q_A 160 QALSHAEAGAQVVAPSDMMDGRIGAIREALESAGHTNVRVMAYSAKYASAYYGPFRDAVGSASNLGKGNRATYQMDPANS 239 (337)
T ss_dssp HHHHHHHTTCSEEEECSCCTTHHHHHHHHHHHTTCTTCEEEEEEEEBCCGGGHHHHHC----------CGGGTSBCTTCS
T ss_pred HHHHHHHcCCCeEecccccccHHHHHHHHHHHCCCCCceeehhHHHHHHHHHHHHHHHhcCCcccCCCCccccCCCCCCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHH
Q 013861 329 REALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLM 408 (435)
Q Consensus 329 ~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G~ide~~~v~Esl~ 408 (435)
+|||||+++|++||||||| |||||+|||||+++|++|++||+||||||||||||||+++||+| +++++|+|+
T Consensus 240 ~EAlrE~~~Di~EGAD~vM-------VKPal~YLDIir~vk~~~~~PvaaYqVSGEYAMikaAa~~GwiD-~~~v~Esl~ 311 (337)
T 1w5q_A 240 DEALHEVAADLAEGADMVM-------VKPGMPYLDIVRRVKDEFRAPTFVYQVSGEYAMHMGAIQNGWLA-ESVILESLT 311 (337)
T ss_dssp HHHHHHHHHHHHTTCSEEE-------EESCGGGHHHHHHHHHHHCSCEEEEECHHHHHHHHHHHHTTSSC-TTHHHHHHH
T ss_pred HHHHHHHHhhHHhCCCEEE-------EcCCCchHHHHHHHHHhcCCCEEEEEcCcHHHHHHHHHHcCCcc-HHHHHHHHH
Confidence 9999999999999999999 99999999999999999999999999999999999999999999 999999999
Q ss_pred HHHHhcccEeehhcHHHHHHHHhc
Q 013861 409 CLRRAGADIILTYFALQAARCLCG 432 (435)
Q Consensus 409 ~ikRAGAd~IiTYfA~~~a~~L~~ 432 (435)
+|||||||+||||||+|+|+||++
T Consensus 312 ~~kRAGAd~IiTYfA~~~a~~L~~ 335 (337)
T 1w5q_A 312 AFKRAGADGILTYFAKQAAEQLRR 335 (337)
T ss_dssp HHHHHTCSEEEETTHHHHHHHHHC
T ss_pred HHHhcCCCEEeeecHHHHHHHHhc
Confidence 999999999999999999999985
No 2
>1w1z_A Delta-aminolevulinic acid dehydratase; synthase, tetrapyrrole biosynthesis, ALAD, porphyrin biosynt heme biosynthesis, lyase; 2.6A {Prosthecochloris vibrioformis} SCOP: c.1.10.3 PDB: 2c1h_A*
Probab=100.00 E-value=2.8e-156 Score=1146.02 Aligned_cols=325 Identities=53% Similarity=0.889 Sum_probs=313.1
Q ss_pred cccCCCCCCCCCCCCCChHHHhhhhcCCCCCCCceeeEEEeeCCC-CcccCCCCCceeechhhhHHHHHHHHHHcCCCeE
Q 013861 96 VVPSLPLSRRPRRNRKSPAMRASFQETNLSPANFVYPLFIHEGEE-DTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSV 174 (435)
Q Consensus 96 ~~~~l~~~~R~RRlR~~~~~R~l~~Et~L~~~~LI~PlFV~eg~~-~~~I~sMPGv~r~s~~~~l~~~v~~~~~~GI~sv 174 (435)
.+.+|++.+||||||+|+++|+|++||+|+++||||||||+||++ ++||+|||||||||++ .|++++++++++||++|
T Consensus 3 ~~~~l~~~~R~RRlR~~~~~R~lv~Et~L~~~dLI~PlFV~eg~~~~~~I~SMPGv~r~sid-~l~~~~~~~~~lGi~~v 81 (328)
T 1w1z_A 3 QLDLLNIVHRPRRLRRTAALRNLVQENTLTVNDLVFPLFVMPGTNAVEEVSSMPGSFRFTID-RAVEECKELYDLGIQGI 81 (328)
T ss_dssp -------CCCGGGGTSSHHHHHHHCCCCCCGGGEEEEEEEESSSSCEEEETTEEEEEEEEHH-HHHHHHHHHHHHTCCEE
T ss_pred ccCcCCcccCCCcCCCChHHHHHHhcCcCCHHHceeeEEEecCCCCccccCCCCCeeEeCHH-HHHHHHHHHHHCCCCEE
Confidence 357888999999999999999999999999999999999999996 6899999999999997 69999999999999999
Q ss_pred EEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHH
Q 013861 175 VLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVS 254 (435)
Q Consensus 175 ~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTshGHcGIv~e~g~IdND~Tv~~Lak~Avs 254 (435)
+|||+ |+ .||+.||+|||+||++|||||.||++||||+|||||||||||+||||||++ +|+|+||+||++|+||||+
T Consensus 82 ~LFgv-p~-~Kd~~gs~A~~~~g~v~rair~iK~~~p~l~vitDvcLc~YT~HGHcGil~-~g~V~ND~Tl~~L~k~Als 158 (328)
T 1w1z_A 82 DLFGI-PE-QKTEDGSEAYNDNGILQQAIRAIKKAVPELCIMTDVALDPFTPFGHDGLVK-DGIILNDETVEVLQKMAVS 158 (328)
T ss_dssp EEEEC-CS-SCCSSCGGGGCTTSHHHHHHHHHHHHSTTSEEEEEECSTTTSTTSCSSEES-SSCEEHHHHHHHHHHHHHH
T ss_pred EEECC-CC-CCCccccccCCCCChHHHHHHHHHHHCCCeEEEEeeecccCCCCCceeecc-CCcCccHHHHHHHHHHHHH
Confidence 99996 75 599999999999999999999999999999999999999999999999996 7999999999999999999
Q ss_pred HHHcCCCeecCCCCCCchHHHHHHHHHHCCCCCceeechhhhhcccccccchhhhcCCCCCCCccccCCCCCCHHHHHHH
Q 013861 255 QARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVE 334 (435)
Q Consensus 255 ~A~AGADiVAPSDMMDGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRdA~~Sap~fgDRktYQmdp~N~~EAlre 334 (435)
||+||||||||||||||||++||++||++||+||+|||||+||||+||||||||++|+|+|||||||||||+|++|||||
T Consensus 159 ~A~AGADiVAPSdMMDGrV~aIR~aLd~~G~~~v~ImsYsaKyASafYGPFRdAa~Sap~fGDrktYQmdpaN~~EAlrE 238 (328)
T 1w1z_A 159 HAEAGADFVSPSDMMDGRIGAIREALDETDHSDVGILSYAAKYASSFYGPFRDALHSAPQFGDKSTYQMNPANTEEAMKE 238 (328)
T ss_dssp HHHHTCSEEEECSCCTTHHHHHHHHHHHTTCTTSEEEEEEEEBCCTTCHHHHHHTTCCCCCSCSTTTSBCTTCSHHHHHH
T ss_pred HHHcCCCeEecccccccHHHHHHHHHHhCCCCCceeeehhHHHhhhccchHHHHhccCCCCCCccccCCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcccccccEEecccCCCcccCCCchHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhc
Q 013861 335 AQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAG 414 (435)
Q Consensus 335 ~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G~ide~~~v~Esl~~ikRAG 414 (435)
+++|++||||||| |||||+|||||+++|++|++||+||||||||||||||+++||+|++++++|+|++|||||
T Consensus 239 ~~~Di~EGAD~vM-------VKPal~YLDIir~vk~~~~~P~aaYqVSGEYAMikaAa~~GwiD~~~~v~Esl~~~kRAG 311 (328)
T 1w1z_A 239 VELDIVEGADIVM-------VKPGLAYLDIVWRTKERFDVPVAIYHVSGEYAMVKAAAAKGWIDEDRVMMESLLCMKRAG 311 (328)
T ss_dssp HHHHHHHTCSEEE-------EESCGGGHHHHHHHHHHHCSCEEEEECHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHT
T ss_pred HHhhHHhCCCEEE-------EcCCCchHHHHHHHHHhcCCCEEEEEccHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcC
Confidence 9999999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEeehhcHHHHHHHHh
Q 013861 415 ADIILTYFALQAARCLC 431 (435)
Q Consensus 415 Ad~IiTYfA~~~a~~L~ 431 (435)
||+||||||+|+|+||+
T Consensus 312 Ad~IiTYfA~~~a~~L~ 328 (328)
T 1w1z_A 312 ADIIFTYYAKEAAKKLR 328 (328)
T ss_dssp CSEEEETTHHHHHHHHC
T ss_pred CCEEeeecHHHHHHhhC
Confidence 99999999999999994
No 3
>3obk_A Delta-aminolevulinic acid dehydratase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, lyase; HET: PBG; 2.50A {Toxoplasma gondii ME49}
Probab=100.00 E-value=3.8e-156 Score=1153.54 Aligned_cols=333 Identities=55% Similarity=0.904 Sum_probs=325.4
Q ss_pred CCCCCCCcccCCCCCCCCCCCCCChHHHhhhhcCCCCCCCceeeEEEeeCCCCcccCCCCCceeechhhhHHHHHHHHHH
Q 013861 89 AAPAGTPVVPSLPLSRRPRRNRKSPAMRASFQETNLSPANFVYPLFIHEGEEDTPIGAMPGCYRLGWRHGLVQEVAKARD 168 (435)
Q Consensus 89 ~~p~g~p~~~~l~~~~R~RRlR~~~~~R~l~~Et~L~~~~LI~PlFV~eg~~~~~I~sMPGv~r~s~~~~l~~~v~~~~~ 168 (435)
.+-.|+|.+ ++.+||||||+++++|+|++||+|+++||||||||+||++++||+|||||||||++ .|+++++++++
T Consensus 9 ~~~~~~~~v---~~~~R~RRlR~~~~~R~lv~Et~L~~~dLI~PlFV~eg~~~~~I~SMPGv~r~sid-~l~~~~~~~~~ 84 (356)
T 3obk_A 9 NNNYGEVWL---PIQARPRRNRKNRAVRQLVQENLVKPSSLIYPLFVHDEETSVPIPSMPGQSRLSME-DLLKEVGEARS 84 (356)
T ss_dssp ECTTSCEEC---CCSCCGGGGGSSHHHHHHHCCCCCCGGGEEEEEEEESSSSCEECTTSTTCEEECHH-HHHHHHHHHHH
T ss_pred cCCCCCEee---ccCCCCCcCCCCHHHHHHHhhcCCCHHHceeeEEEecCCCCcccCCCCCceEECHH-HHHHHHHHHHH
Confidence 677899998 55689999999999999999999999999999999999878899999999999997 69999999999
Q ss_pred cCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecC-CCccccHHHHHH
Q 013861 169 VGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVRE-DGVIMNDETVHQ 247 (435)
Q Consensus 169 ~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTshGHcGIv~e-~g~IdND~Tv~~ 247 (435)
+||++|+|||++++++||+.||+|||+||++|||||.||++||||+|||||||||||+||||||+++ +|+|+||+||++
T Consensus 85 lGi~av~LFgv~~p~~KD~~gs~A~~~~g~v~rAir~iK~~~P~l~VitDVcLc~YT~HGHcGil~~~~g~V~ND~Tl~~ 164 (356)
T 3obk_A 85 YGIKAFMLFPKVDDELKSVMAEESYNPDGLLPRAIMALKEAFPDVLLLADVALDPYSSMGHDGVVDEQSGKIVNDLTVHQ 164 (356)
T ss_dssp TTCCEEEEEEECCGGGCBSSCGGGGCTTSHHHHHHHHHHHHSTTCEEEEEECSGGGBTTCCSSCBCTTTCCBCHHHHHHH
T ss_pred CCCCEEEEecCCCcccCCcccccccCCCChHHHHHHHHHHHCCCCEEEEeeccccccCCCcceeeeCCCCCCCCHHHHHH
Confidence 9999999999987789999999999999999999999999999999999999999999999999976 499999999999
Q ss_pred HHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCCCceeechhhhhcccccccchhhhcCC-CCCCCccccCCCCC
Q 013861 248 LCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSN-PRFGDKKTYQMNPA 326 (435)
Q Consensus 248 Lak~Avs~A~AGADiVAPSDMMDGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRdA~~Sa-p~fgDRktYQmdp~ 326 (435)
|++|||+||+||||||||||||||||++||++||++||+||+|||||+||||+||||||||++|+ |+|||||||||||+
T Consensus 165 Lak~Als~A~AGADiVAPSdMMDGrV~aIR~aLd~~G~~~v~IMsYsaKyASafYGPFRdAa~Sa~p~~GDRktYQmdpa 244 (356)
T 3obk_A 165 LCKQAITLARAGADMVCPSDMMDGRVSAIRESLDMEGCTDTSILAYSCKYASSFYGPFRDALDSHMVGGTDKKTYQMDPS 244 (356)
T ss_dssp HHHHHHHHHHHTCSEEEECSCCTTHHHHHHHHHHHTTCTTSEEEEEEEEBCCSTTHHHHHHHTCCCSTTCCSTTTSBCTT
T ss_pred HHHHHHHHHHcCCCeEeccccccCHHHHHHHHHHHCCCCCcceehhHHHHhhhccchhhHHhcCCCCCCCCccccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred CHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhhHHHHH
Q 013861 327 NYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMES 406 (435)
Q Consensus 327 N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G~ide~~~v~Es 406 (435)
|++|||||+++|++||||||| |||||+|||||+++|++|++||+||||||||||||||+++||+|++++++|+
T Consensus 245 N~~EAlrE~~lDi~EGAD~vM-------VKPal~YLDIi~~vk~~~~~PvaaYqVSGEYAMikAAa~~GwiD~~~~v~Es 317 (356)
T 3obk_A 245 NSREAEREAEADASEGADMLM-------VKPGLPYLDVLAKIREKSKLPMVAYHVSGEYAMLKAAAEKGYISEKDTVLEV 317 (356)
T ss_dssp CSHHHHHHHHHHHHTTCSEEE-------EESSGGGHHHHHHHHHHCSSCEEEEECHHHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred CHHHHHHHHHhhHhcCCCEEE-------ecCCCcHHHHHHHHHhcCCCCEEEEEccHHHHHHHHHHHcCCccHHHHHHHH
Confidence 999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccEeehhcHHHHHHHHhc
Q 013861 407 LMCLRRAGADIILTYFALQAARCLCG 432 (435)
Q Consensus 407 l~~ikRAGAd~IiTYfA~~~a~~L~~ 432 (435)
|++|||||||+||||||+|+|+||++
T Consensus 318 l~~~kRAGAd~IiTYfA~~~a~~L~~ 343 (356)
T 3obk_A 318 LKSFRRAGADAVATYYAKEAAKWMVE 343 (356)
T ss_dssp HHHHHHHTCSEEEETTHHHHHHHHHH
T ss_pred HHHHHHcCCCEEehhhHHHHHHHHHh
Confidence 99999999999999999999999975
No 4
>1l6s_A Porphobilinogen synthase; dehydratase, lyase; HET: CME DSB; 1.70A {Escherichia coli} SCOP: c.1.10.3 PDB: 1i8j_A* 1l6y_A* 1b4e_A
Probab=100.00 E-value=7.2e-154 Score=1127.18 Aligned_cols=319 Identities=48% Similarity=0.770 Sum_probs=312.8
Q ss_pred CCCCCCCCCCCChHHHhhhhcCCCCCCCceeeEEEeeCCC-CcccCCCCCceeechhhhHHHHHHHHHHcCCCeEEEeec
Q 013861 101 PLSRRPRRNRKSPAMRASFQETNLSPANFVYPLFIHEGEE-DTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPK 179 (435)
Q Consensus 101 ~~~~R~RRlR~~~~~R~l~~Et~L~~~~LI~PlFV~eg~~-~~~I~sMPGv~r~s~~~~l~~~v~~~~~~GI~sv~LFgv 179 (435)
++.+||||||+|+++|+|++||+|+++||||||||+||++ ++||+|||||||||++ .|++++++++++||++|+|||+
T Consensus 2 ~m~~R~RRlR~~~~~R~lv~Et~L~~~dLI~PlFV~eg~~~~~~I~SMPGv~r~sid-~l~~~~~~~~~lGi~~v~LFgv 80 (323)
T 1l6s_A 2 DLIQRPRRLRKSPALRAMFEETTLSLNDLVLPIFVEEEIDDYKAVEAMPGVMRIPEK-HLAREIERIANAGIRSVMTFGI 80 (323)
T ss_dssp CCSCCGGGGGSSHHHHHHHCCCCCCGGGEEEEEEEETTCSSCEECTTSTTCEEEEGG-GHHHHHHHHHHHTCCEEEEEEE
T ss_pred cccccCCccCCChHHHHHhhcCcCCHHHceeeEEEecCCCCccccCCCCCceeeCHH-HHHHHHHHHHHCCCCEEEEeCC
Confidence 4578999999999999999999999999999999999996 6899999999999997 6999999999999999999997
Q ss_pred CCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcC
Q 013861 180 VPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAG 259 (435)
Q Consensus 180 i~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTshGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AG 259 (435)
|+ .||+.||+|||+||++|||||.||++||||+|||||||||||+||||||++ +|.|+||+||++|++|||+||+||
T Consensus 81 -p~-~Kd~~gs~A~~~~g~v~rair~iK~~~pdl~vitDvcLc~YT~HGHcGil~-~g~V~ND~Tl~~Lak~Als~A~AG 157 (323)
T 1l6s_A 81 -SH-HTDETGSDAWREDGLVARMSRICKQTVPEMIVMSDTCFCEYTSHGHCGVLC-EHGVDNDATLENLGKQAVVAAAAG 157 (323)
T ss_dssp -CS-SCBSSCGGGGSTTSHHHHHHHHHHHHCTTSEEEEEECSTTTBSSCCSSCBC-SSSBCHHHHHHHHHHHHHHHHHHT
T ss_pred -CC-CCCccccccCCCCCcHHHHHHHHHHHCCCeEEEEeeeccccCCCCceEecc-CCcCccHHHHHHHHHHHHHHHHcC
Confidence 75 599999999999999999999999999999999999999999999999995 799999999999999999999999
Q ss_pred CCeecCCCCCCchHHHHHHHHHHCCCCCceeechhhhhcccccccchhhhcCCCCCCCccccCCCCCCHHHHHHHHHhcc
Q 013861 260 ADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADE 339 (435)
Q Consensus 260 ADiVAPSDMMDGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~ 339 (435)
||||||||||||||++||++||++||+||+|||||+||||+||||||||++|+|+ ||||||||||+|++|||||+++|+
T Consensus 158 AdiVAPSdMMDGrV~aIR~aLd~~G~~~v~ImsYsaKyASafYGPFRdAa~Sap~-GDRktYQmdpaN~~EAlre~~~Di 236 (323)
T 1l6s_A 158 ADFIAPSAAMDGQVQAIRQALDAAGFKDTAIMSYSTKFASSFYGPFREAAGSALK-GDRKSYQMNPMNRREAIRESLLDE 236 (323)
T ss_dssp CSEEEECSCCTTHHHHHHHHHHHTTCTTCEEBCCCEEBCCSCCHHHHHHHTCCCS-SCCTTTSBCTTCHHHHHHHHHHHH
T ss_pred CCeEecccccccHHHHHHHHHHhCCCCCceeeehhHHHhHHhhHHHHHHhcCCCC-CCccccCCCCCCHHHHHHHHHhhH
Confidence 9999999999999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred cccccEEecccCCCcccCCCchHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEee
Q 013861 340 SEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIIL 419 (435)
Q Consensus 340 ~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G~ide~~~v~Esl~~ikRAGAd~Ii 419 (435)
+||||||| |||||+|||||+++|++|++||+||||||||||||||+++||+|++++++|+|++|||||||+||
T Consensus 237 ~EGAD~vM-------VKPal~YLDIi~~vk~~~~~P~aaYqVSGEYAMikaAa~~GwiD~~~~vlEsl~~~kRAGAd~Ii 309 (323)
T 1l6s_A 237 AQGADCLM-------VKPAGAYLDIVRELRERTELPIGAYQVSGEYAMIKFAALAGAIDEEKVVLESLGSIKRAGADLIF 309 (323)
T ss_dssp HTTCSBEE-------EESCTTCHHHHHHHHTTCSSCEEEEECHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCSEEE
T ss_pred HhCCceEE-------EecCcchhHHHHHHHHhcCCCeEEEEcCcHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCCEEe
Confidence 99999999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcHHHHHHHHh
Q 013861 420 TYFALQAARCLC 431 (435)
Q Consensus 420 TYfA~~~a~~L~ 431 (435)
||||+|+|+||.
T Consensus 310 TYfA~~~a~~~~ 321 (323)
T 1l6s_A 310 SYFALDLAEKKI 321 (323)
T ss_dssp ETTHHHHHHTTS
T ss_pred ehhHHHHHHHhh
Confidence 999999999985
No 5
>1h7n_A 5-aminolaevulinic acid dehydratase; lyase, aldolase, TIM barrel, tetrapyrrole synthesis; HET: SHF; 1.6A {Saccharomyces cerevisiae} SCOP: c.1.10.3 PDB: 1h7p_A* 1h7r_A* 1ohl_A* 1qml_A 1qnv_A 1w31_A* 1h7o_A* 1eb3_A* 1gjp_A* 1ylv_A* 1aw5_A
Probab=100.00 E-value=4.7e-152 Score=1121.74 Aligned_cols=327 Identities=36% Similarity=0.559 Sum_probs=318.0
Q ss_pred CCCCCCCCCCCCCChHHHhhhhcCCCCCCCceeeEEEeeCCC-CcccCCCCCceeechhhhHHHHHHHHHHcCCCeEEEe
Q 013861 99 SLPLSRRPRRNRKSPAMRASFQETNLSPANFVYPLFIHEGEE-DTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLF 177 (435)
Q Consensus 99 ~l~~~~R~RRlR~~~~~R~l~~Et~L~~~~LI~PlFV~eg~~-~~~I~sMPGv~r~s~~~~l~~~v~~~~~~GI~sv~LF 177 (435)
|++..+++++.+.|+++|+|++||+|+++||||||||+||++ ++||+|||||||||++ .|++++++++++||++|+||
T Consensus 11 ~~~~~~~l~~g~~~~~~R~lv~Et~L~~~dLI~PlFV~eg~~~~~~I~SMPGv~r~sid-~l~~~~~~~~~lGi~~v~LF 89 (342)
T 1h7n_A 11 PTEISSVLAGGYNHPLLRQWQSERQLTKNMLIFPLFISDNPDDFTEIDSLPNINRIGVN-RLKDYLKPLVAKGLRSVILF 89 (342)
T ss_dssp CCCGGGCCGGGSSSHHHHHHTCSSCCCGGGEEEEEEEESSTTCEEECTTSTTCEEECHH-HHHHHHHHHHHTTCCEEEEE
T ss_pred CCCcccccccccCCHHHHHHHhcCcCCHHHceeeEEEecCCCCceeCCCCCCceeeCHH-HHHHHHHHHHHCCCCEEEEe
Confidence 366778999999999999999999999999999999999996 6899999999999997 69999999999999999999
Q ss_pred ecCCCC-CCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHH
Q 013861 178 PKVPDA-LKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQA 256 (435)
Q Consensus 178 gvi~~~-~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTshGHcGIv~e~g~IdND~Tv~~Lak~Avs~A 256 (435)
|++|+. .||+.||+|||+||++|||||.||++||||+|||||||||||+||||||++++|+|+||+||++|+||||+||
T Consensus 90 gv~~~~~~KD~~gs~A~~~~g~v~rair~iK~~~pdl~VitDvcLc~YT~HGHcGil~~~g~V~ND~Tl~~Lak~Als~A 169 (342)
T 1h7n_A 90 GVPLIPGTKDPVGTAADDPAGPVIQGIKFIREYFPELYIICDVCLCEYTSHGHCGVLYDDGTINRERSVSRLAAVAVNYA 169 (342)
T ss_dssp EECCSTTCCBTTCGGGGCTTSHHHHHHHHHHHHCTTSEEEEEECSTTTBTTCCSSCBCTTSSBCHHHHHHHHHHHHHHHH
T ss_pred cccCccCCCCccccccCCCCChHHHHHHHHHHHCCCeEEEEeeecccccCCCceeEECCCCcCccHHHHHHHHHHHHHHH
Confidence 986643 7999999999999999999999999999999999999999999999999977899999999999999999999
Q ss_pred HcCCCeecCCCCCCchHHHHHHHHHHCCC-CCceeechhhhhcccccccchhhhcCCCCCCCccccCCCCCCHHHHHHHH
Q 013861 257 RAGADVVSPSDMMDGRVGAIRAALDAEGF-QHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEA 335 (435)
Q Consensus 257 ~AGADiVAPSDMMDGrVgAIR~aLD~~Gf-~~v~IMSYSaKyASafYGPFRdA~~Sap~fgDRktYQmdp~N~~EAlre~ 335 (435)
+||||||||||||||||++||++||++|| ++|+|||||+||||+||||||||++|+|+|||||||||||+|++|||||+
T Consensus 170 ~AGAdiVAPSdMMDGrV~aIR~aLd~~G~~~~v~ImsYsaKyASafYGPFRdAa~Sap~~GDRktYQmdpaN~~EAlre~ 249 (342)
T 1h7n_A 170 KAGAHCVAPSDMIDGRIRDIKRGLINANLAHKTFVLSYAAKFSGNLYGPFRDAACSAPSNGDRKCYQLPPAGRGLARRAL 249 (342)
T ss_dssp HHTCSEEEECCCCTTHHHHHHHHHHHTTCTTTCEEEEEEEEBCSSCCHHHHHHHTCCCSSSCSTTTSBCTTCHHHHHHHH
T ss_pred HcCCCeeecccccccHHHHHHHHHHHCCCccCceEeechHHHhHHhhHHHHHHHhcCCCCCCccccCCCCCCHHHHHHHH
Confidence 99999999999999999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred HhcccccccEEecccCCCcccCCCchHHHHHHHHhhC-CCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhc
Q 013861 336 QADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAG 414 (435)
Q Consensus 336 ~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~-~lPvaaYqVSGEYaMikaAa~~G~ide~~~v~Esl~~ikRAG 414 (435)
++|++||||||| |||||+|||||+++|++| ++||+||||||||||||+|+++||+|++++++|+|++|||||
T Consensus 250 ~~Di~EGAD~vM-------VKPal~YLDIi~~vk~~~p~~P~aaYqVSGEYAMikaAa~~GwiD~~~~v~Esl~~~kRAG 322 (342)
T 1h7n_A 250 ERDMSEGADGII-------VKPSTFYLDIMRDASEICKDLPICAYHVSGEYAMLHAAAEKGVVDLKTIAFESHQGFLRAG 322 (342)
T ss_dssp HHHHHTTCSEEE-------EESSGGGHHHHHHHHHHTTTSCEEEEECHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHTT
T ss_pred HhhHHhCCCeEE-------EecCccHHHHHHHHHHhccCCCeEEEEcCcHHHHHHHHHHcCCccHHHHHHHHHHHHHhcC
Confidence 999999999999 999999999999999999 999999999999999999999999999999999999999999
Q ss_pred ccEeehhcHHHHHHHHhcc
Q 013861 415 ADIILTYFALQAARCLCGE 433 (435)
Q Consensus 415 Ad~IiTYfA~~~a~~L~~~ 433 (435)
||+||||||+|+|+||+++
T Consensus 323 Ad~IiTYfA~~~a~~L~~~ 341 (342)
T 1h7n_A 323 ARLIITYLAPEFLDWLDEE 341 (342)
T ss_dssp CSEEEETTHHHHHHHTTC-
T ss_pred CCEEEeecHHHHHHHhhcc
Confidence 9999999999999999853
No 6
>1pv8_A Delta-aminolevulinic acid dehydratase; porphobilinogen synthase, tetrapyrrole biosynthesis, reactio intermediate, lyase; HET: PB1; 2.20A {Homo sapiens} SCOP: c.1.10.3 PDB: 1e51_A* 2z0i_A 2z1b_A
Probab=100.00 E-value=1.5e-151 Score=1114.10 Aligned_cols=323 Identities=40% Similarity=0.697 Sum_probs=267.4
Q ss_pred CCCCCCCCCCCChHHHhhhh-cCCCCCCCceeeEEEeeCCC-CcccCCCCCceeechhhhHHHHHHHHHHcCCCeEEEee
Q 013861 101 PLSRRPRRNRKSPAMRASFQ-ETNLSPANFVYPLFIHEGEE-DTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFP 178 (435)
Q Consensus 101 ~~~~R~RRlR~~~~~R~l~~-Et~L~~~~LI~PlFV~eg~~-~~~I~sMPGv~r~s~~~~l~~~v~~~~~~GI~sv~LFg 178 (435)
+..+++++.+.|+++|+|++ ||+|+++||||||||+||++ ++||+|||||||||++ .|++++++++++||++|+|||
T Consensus 2 ~~~~~l~~g~~~~~~R~lv~~Et~L~~~dLI~PlFV~eg~~~~~~I~SMPGv~r~sid-~l~~~~~~~~~~Gi~~v~LFg 80 (330)
T 1pv8_A 2 QPQSVLHSGYLHPLLRAWQTATTTLNASNLIYPIFVTDVPDDIQPITSLPGVARYGVK-RLEEMLRPLVEEGLRCVLIFG 80 (330)
T ss_dssp ---------CCCHHHHHHHTTTTCCCGGGEEEEEEECSCTTCEEECSSSTTCEEECHH-HHHHHHHHHHHHTCCEEEEEE
T ss_pred CcccccccccCCHHHHHHHhcCCccCHHHceeeEEEecCCCCccccCCCCCceeecHH-HHHHHHHHHHHCCCCEEEEec
Confidence 34568999999999999999 99999999999999999986 6899999999999997 699999999999999999999
Q ss_pred cCCCC-CCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHH
Q 013861 179 KVPDA-LKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQAR 257 (435)
Q Consensus 179 vi~~~-~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTshGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~ 257 (435)
+ |+. .||+.||+|||+||++|||||.||++||||+|||||||||||+||||||++++|+|+||+||++|++|||+||+
T Consensus 81 v-p~~~~Kd~~gs~A~~~~g~v~~air~iK~~~pdl~vitDvcLc~YT~HGHcGil~~~g~v~ND~Tl~~La~~Als~A~ 159 (330)
T 1pv8_A 81 V-PSRVPKDERGSAADSEESPAIEAIHLLRKTFPNLLVACDVCLCPYTSHGHCGLLSENGAFRAEESRQRLAEVALAYAK 159 (330)
T ss_dssp C-C--------------CCSHHHHHHHHHHHHSTTSEEEEEECCC---------------CHHHHHHHHHHHHHHHHHHH
T ss_pred C-CcccCCCccccccCCCCChHHHHHHHHHHHCCCeEEEEeeecccccCCCceeEECCCCcCccHHHHHHHHHHHHHHHH
Confidence 7 654 39999999999999999999999999999999999999999999999999768999999999999999999999
Q ss_pred cCCCeecCCCCCCchHHHHHHHHHHCCCCC-ceeechhhhhcccccccchhhhcCCCCCCCccccCCCCCCHHHHHHHHH
Q 013861 258 AGADVVSPSDMMDGRVGAIRAALDAEGFQH-VSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQ 336 (435)
Q Consensus 258 AGADiVAPSDMMDGrVgAIR~aLD~~Gf~~-v~IMSYSaKyASafYGPFRdA~~Sap~fgDRktYQmdp~N~~EAlre~~ 336 (435)
||||||||||||||||++||++||++||+| |+|||||+||||+||||||||++|+|+|||||||||||+|++|||||++
T Consensus 160 AGAdiVAPSdMMDGrV~aIR~aLd~~G~~~~v~ImsYsaKyASafYGPFRdAa~Sap~~GDRktYQmdpaN~~EAlre~~ 239 (330)
T 1pv8_A 160 AGCQVVAPSDMMDGRVEAIKEALMAHGLGNRVSVMSYSAKFASCFYGPFRDAAKSSPAFGDRRCYQLPPGARGLALRAVD 239 (330)
T ss_dssp HTCSEEEECC--CCHHHHHHHHHHHTTCTTTCEEBCCCEECCCGGGHHHHHCC-------------CCTTCHHHHHHHHH
T ss_pred cCCCeeecccccccHHHHHHHHHHhCCCcCCceEeehhHHHhHhhhhHHHHHHhcCCCCCCccccCCCCCCHHHHHHHHH
Confidence 999999999999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred hcccccccEEecccCCCcccCCCchHHHHHHHHhhC-CCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcc
Q 013861 337 ADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGA 415 (435)
Q Consensus 337 ~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~-~lPvaaYqVSGEYaMikaAa~~G~ide~~~v~Esl~~ikRAGA 415 (435)
+|++||||||| |||||+|||||+++|++| ++||+||||||||||||||+++||+|++++++|+|++||||||
T Consensus 240 ~Di~EGAD~vM-------VKPal~YLDIi~~vk~~~p~~P~aaYqVSGEYAMikaAa~~GwiD~~~~v~Esl~~~kRAGA 312 (330)
T 1pv8_A 240 RDVREGADMLM-------VKPGMPYLDIVREVKDKHPDLPLAVYHVSGEFAMLWHGAQAGAFDLKAAVLEAMTAFRRAGA 312 (330)
T ss_dssp HHHHTTCSBEE-------EESCGGGHHHHHHHHHHSTTSCEEEEECHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTC
T ss_pred hhHHhCCceEE-------EecCccHHHHHHHHHHhcCCCCeEEEEcCcHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCC
Confidence 99999999999 999999999999999999 8999999999999999999999999999999999999999999
Q ss_pred cEeehhcHHHHHHHHhc
Q 013861 416 DIILTYFALQAARCLCG 432 (435)
Q Consensus 416 d~IiTYfA~~~a~~L~~ 432 (435)
|+||||||+|+|+||++
T Consensus 313 d~IiTYfA~~~a~~L~~ 329 (330)
T 1pv8_A 313 DIIITYYTPQLLQWLKE 329 (330)
T ss_dssp SEEEETTHHHHHHHTTT
T ss_pred CEEeeecHHHHHHHhcc
Confidence 99999999999999975
No 7
>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri}
Probab=96.50 E-value=0.054 Score=47.85 Aligned_cols=168 Identities=18% Similarity=0.248 Sum_probs=97.6
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCC
Q 013861 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDG 237 (435)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTshGHcGIv~e~g 237 (435)
..++.++.+.+ |+..+-+ |. +- +-.+|+ ..|+.||+.+|++-|+.|.-+. +
T Consensus 14 ~~~~~~~~~~~-~v~~iev-~~-~~----------~~~~g~--~~i~~l~~~~~~~~i~~~l~~~-------d------- 64 (207)
T 3ajx_A 14 AALELAGKVAE-YVDIIEL-GT-PL----------IKAEGL--SVITAVKKAHPDKIVFADMKTM-------D------- 64 (207)
T ss_dssp HHHHHHHHHGG-GCSEEEE-CH-HH----------HHHHCT--HHHHHHHHHSTTSEEEEEEEEC-------S-------
T ss_pred HHHHHHHHhhc-cCCEEEE-Cc-HH----------HHhhCH--HHHHHHHHhCCCCeEEEEEEec-------C-------
Confidence 46677777766 7777555 32 21 112233 4789999999998898887531 0
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC-chHHHHHHHHHHCCCCCceeechhhhhcccccccchhhhcCCCCCC
Q 013861 238 VIMNDETVHQLCKQAVSQARAGADVVSPSDMMD-GRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFG 316 (435)
Q Consensus 238 ~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMMD-GrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRdA~~Sap~fg 316 (435)
| -+| .++ ..+++|||.|.-....+ ..+..+++.+.+.|.. +++ | +
T Consensus 65 -i--~~~---~~~---~a~~~Gad~v~vh~~~~~~~~~~~~~~~~~~g~~-~gv--------~-~--------------- 110 (207)
T 3ajx_A 65 -A--GEL---EAD---IAFKAGADLVTVLGSADDSTIAGAVKAAQAHNKG-VVV--------D-L--------------- 110 (207)
T ss_dssp -C--HHH---HHH---HHHHTTCSEEEEETTSCHHHHHHHHHHHHHHTCE-EEE--------E-C---------------
T ss_pred -c--cHH---HHH---HHHhCCCCEEEEeccCChHHHHHHHHHHHHcCCc-eEE--------E-E---------------
Confidence 1 122 222 45679999996333333 6777888888776642 222 0 0
Q ss_pred CccccCCCCCCHHHHHHHHHhcccccccEE-ecccCCCcccCCCchH-HHHHHHHhhCCCCeEEEEechHHHHHHHHHHC
Q 013861 317 DKKTYQMNPANYREALVEAQADESEGADIL-LFSVLGSQVKPGLPYL-DVIRLLRDKYPLPIAAYQVSGEYSMIKAGGAL 394 (435)
Q Consensus 317 DRktYQmdp~N~~EAlre~~~D~~EGADil-M~~~~~~~VKPal~YL-DIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~ 394 (435)
+.+.|..|.+.++. +.|+|+| ++.... ..+++..+. +-|++++.. ++|+.+ -
T Consensus 111 ------~s~~~p~~~~~~~~---~~g~d~v~~~~~~~-~~~~g~~~~~~~i~~~~~~-~~pi~v---------------~ 164 (207)
T 3ajx_A 111 ------IGIEDKATRAQEVR---ALGAKFVEMHAGLD-EQAKPGFDLNGLLAAGEKA-RVPFSV---------------A 164 (207)
T ss_dssp ------TTCSSHHHHHHHHH---HTTCSEEEEECCHH-HHTSTTCCTHHHHHHHHHH-TSCEEE---------------E
T ss_pred ------ecCCChHHHHHHHH---HhCCCEEEEEeccc-ccccCCCchHHHHHHhhCC-CCCEEE---------------E
Confidence 24446667554443 2389999 642221 123555556 455555443 677753 3
Q ss_pred CCCchhhHHHHHHHHHHHhcccEee
Q 013861 395 KMIDEQRVMMESLMCLRRAGADIIL 419 (435)
Q Consensus 395 G~ide~~~v~Esl~~ikRAGAd~Ii 419 (435)
|-++.+ ....+.+||||.|+
T Consensus 165 GGI~~~-----~~~~~~~aGad~vv 184 (207)
T 3ajx_A 165 GGVKVA-----TIPAVQKAGAEVAV 184 (207)
T ss_dssp SSCCGG-----GHHHHHHTTCSEEE
T ss_pred CCcCHH-----HHHHHHHcCCCEEE
Confidence 445543 45556789999986
No 8
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=96.48 E-value=0.12 Score=48.03 Aligned_cols=185 Identities=18% Similarity=0.202 Sum_probs=106.5
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcC--------CCCC----HHHHHHHHHHHC--CCeEEEeeecccC
Q 013861 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYN--------DNGL----VPRTIWLLKDRY--PDLVIYTDVALDP 223 (435)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~--------~~g~----v~raIr~iK~~~--Pdl~IitDVcLc~ 223 (435)
..++.++.+.+.|+..+-| + +|- -|+..+.-.- .+|. ....++.||+.. | ++++.+. ++
T Consensus 33 ~~~~~~~~l~~~Gad~iel-g-~p~--~dp~~dg~~i~~a~~~al~~g~~~~~~~~~i~~ir~~~~~P-v~~m~~~--~~ 105 (262)
T 1rd5_A 33 TTAEALRLLDGCGADVIEL-G-VPC--SDPYIDGPIIQASVARALASGTTMDAVLEMLREVTPELSCP-VVLLSYY--KP 105 (262)
T ss_dssp HHHHHHHHHHHTTCSSEEE-E-CCC--SCCTTSCHHHHHHHHHHHTTTCCHHHHHHHHHHHGGGCSSC-EEEECCS--HH
T ss_pred HHHHHHHHHHHcCCCEEEE-C-CCC--CCcccCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCC-EEEEecC--cH
Confidence 4788999999999999888 5 342 2332210000 1111 234577777763 3 3333211 11
Q ss_pred CCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCCCceeechhhhhcccccc
Q 013861 224 YSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYG 303 (435)
Q Consensus 224 YTshGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMMDGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYG 303 (435)
. . . ..+ +. .+++|||.|--.|+-...+..+++.+.++|...+..+
T Consensus 106 ~--------~-~-~~~--~~-----------a~~aGadgv~v~d~~~~~~~~~~~~~~~~g~~~i~~~------------ 150 (262)
T 1rd5_A 106 I--------M-F-RSL--AK-----------MKEAGVHGLIVPDLPYVAAHSLWSEAKNNNLELVLLT------------ 150 (262)
T ss_dssp H--------H-S-CCT--HH-----------HHHTTCCEEECTTCBTTTHHHHHHHHHHTTCEECEEE------------
T ss_pred H--------H-H-HHH--HH-----------HHHcCCCEEEEcCCChhhHHHHHHHHHHcCCceEEEE------------
Confidence 0 1 0 111 11 6789999554457766678888888888887544443
Q ss_pred cchhhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCC-CcccCCC--chHHHHHHHHhhCCCCeEEEE
Q 013861 304 PFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLG-SQVKPGL--PYLDVIRLLRDKYPLPIAAYQ 380 (435)
Q Consensus 304 PFRdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~-~~VKPal--~YLDIIr~vk~~~~lPvaaYq 380 (435)
.|.+..|.+.++..+. +|...+| ++.| +-.|... .-++.|+++|+..++||.+
T Consensus 151 --------------------a~~t~~e~~~~~~~~~-~g~v~~~-s~~G~tG~~~~~~~~~~~~i~~v~~~~~~pI~v-- 206 (262)
T 1rd5_A 151 --------------------TPAIPEDRMKEITKAS-EGFVYLV-SVNGVTGPRANVNPRVESLIQEVKKVTNKPVAV-- 206 (262)
T ss_dssp --------------------CTTSCHHHHHHHHHHC-CSCEEEE-CSSCCBCTTSCBCTHHHHHHHHHHHHCSSCEEE--
T ss_pred --------------------CCCCCHHHHHHHHhcC-CCeEEEe-cCCCCCCCCcCCCchHHHHHHHHHhhcCCeEEE--
Confidence 3445566666665543 3544444 4443 2233333 2568999999999999987
Q ss_pred echHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEee--hhcHHH
Q 013861 381 VSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIIL--TYFALQ 425 (435)
Q Consensus 381 VSGEYaMikaAa~~G~ide~~~v~Esl~~ikRAGAd~Ii--TYfA~~ 425 (435)
-|-|+. -|.+..+..+|||.++ |++...
T Consensus 207 -------------gGGI~~----~e~~~~~~~~GAdgvvVGSai~~~ 236 (262)
T 1rd5_A 207 -------------GFGISK----PEHVKQIAQWGADGVIIGSAMVRQ 236 (262)
T ss_dssp -------------ESCCCS----HHHHHHHHHTTCSEEEECHHHHHH
T ss_pred -------------ECCcCC----HHHHHHHHHcCCCEEEEChHHHhH
Confidence 344552 2344556778999754 444443
No 9
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=96.36 E-value=0.17 Score=47.69 Aligned_cols=178 Identities=19% Similarity=0.222 Sum_probs=105.7
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHH------------------HHHHHHHHHCCCe--EEEe
Q 013861 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVP------------------RTIWLLKDRYPDL--VIYT 217 (435)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~------------------raIr~iK~~~Pdl--~Iit 217 (435)
...+.++.+.+.|+..+.| |+ |- -|+.. ||++. ..++.||+.++++ ++++
T Consensus 32 ~~~~~~~~l~~~GaD~iei-g~-P~--sdp~~------DG~~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~~~Pv~lm~ 101 (268)
T 1qop_A 32 QSLKIIDTLIDAGADALEL-GV-PF--SDPLA------DGPTIQNANLRAFAAGVTPAQCFEMLAIIREKHPTIPIGLLM 101 (268)
T ss_dssp HHHHHHHHHHHTTCSSEEE-EC-CC--SCCTT------CCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSSSCEEEEE
T ss_pred HHHHHHHHHHHCCCCEEEE-CC-CC--CCccC------CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEE
Confidence 4788899999999999888 74 53 23321 34444 3488999886543 3332
Q ss_pred eecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCC-eecCCCCCCchHHHHHHHHHHCCCCCceeechhhh
Q 013861 218 DVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGAD-VVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAK 296 (435)
Q Consensus 218 DVcLc~YTshGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGAD-iVAPSDMMDGrVgAIR~aLD~~Gf~~v~IMSYSaK 296 (435)
+.+ |. . ..|. .+-+-..+++||| ++.| |.-...+....+.+.++|...+.+|+-+
T Consensus 102 y~n--~v--------~-~~g~----------~~~~~~~~~aGadgii~~-d~~~e~~~~~~~~~~~~g~~~i~l~~p~-- 157 (268)
T 1qop_A 102 YAN--LV--------F-NNGI----------DAFYARCEQVGVDSVLVA-DVPVEESAPFRQAALRHNIAPIFICPPN-- 157 (268)
T ss_dssp CHH--HH--------H-TTCH----------HHHHHHHHHHTCCEEEET-TCCGGGCHHHHHHHHHTTCEEECEECTT--
T ss_pred ccc--HH--------H-HhhH----------HHHHHHHHHcCCCEEEEc-CCCHHHHHHHHHHHHHcCCcEEEEECCC--
Confidence 211 10 1 1111 2333446789999 6666 6666678888888888887544443322
Q ss_pred hcccccccchhhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCC--cccCC-CchHHHHHHHHhhCC
Q 013861 297 YASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGS--QVKPG-LPYLDVIRLLRDKYP 373 (435)
Q Consensus 297 yASafYGPFRdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~--~VKPa-l~YLDIIr~vk~~~~ 373 (435)
...|-++++..+ .+|...+| ++.|- |-.|- ..-++.|+++|+.++
T Consensus 158 ------------------------------t~~~~i~~i~~~-~~g~v~~~-s~~G~tG~~~~~~~~~~~~i~~lr~~~~ 205 (268)
T 1qop_A 158 ------------------------------ADDDLLRQVASY-GRGYTYLL-SRSGVTGAENRGALPLHHLIEKLKEYHA 205 (268)
T ss_dssp ------------------------------CCHHHHHHHHHH-CCSCEEEE-SSSSCCCSSSCC--CCHHHHHHHHHTTC
T ss_pred ------------------------------CCHHHHHHHHhh-CCCcEEEE-ecCCcCCCccCCCchHHHHHHHHHhccC
Confidence 334545555443 45665555 54431 22222 234699999999999
Q ss_pred CCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEeeh
Q 013861 374 LPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILT 420 (435)
Q Consensus 374 lPvaaYqVSGEYaMikaAa~~G~ide~~~v~Esl~~ikRAGAd~IiT 420 (435)
+||++ -|-++.. |....+..+|||.+|.
T Consensus 206 ~pi~v---------------ggGI~t~----e~~~~~~~agAD~vVV 233 (268)
T 1qop_A 206 APALQ---------------GFGISSP----EQVSAAVRAGAAGAIS 233 (268)
T ss_dssp CCEEE---------------ESSCCSH----HHHHHHHHTTCSEEEE
T ss_pred CcEEE---------------ECCCCCH----HHHHHHHHcCCCEEEE
Confidence 99886 2334422 3444556789998873
No 10
>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1
Probab=95.64 E-value=0.21 Score=46.45 Aligned_cols=150 Identities=17% Similarity=0.224 Sum_probs=95.7
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCC
Q 013861 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDG 237 (435)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTshGHcGIv~e~g 237 (435)
.+++.++.+++.|++.|-+ . .|++.+ .+.|+.++++||++++-+++.+
T Consensus 30 ~~~~~~~al~~gGv~~iel-~-----~k~~~~----------~~~i~~l~~~~~~l~vgaGtvl---------------- 77 (224)
T 1vhc_A 30 DILPLADTLAKNGLSVAEI-T-----FRSEAA----------ADAIRLLRANRPDFLIAAGTVL---------------- 77 (224)
T ss_dssp GHHHHHHHHHHTTCCEEEE-E-----TTSTTH----------HHHHHHHHHHCTTCEEEEESCC----------------
T ss_pred HHHHHHHHHHHcCCCEEEE-e-----ccCchH----------HHHHHHHHHhCcCcEEeeCcEe----------------
Confidence 5889999999999997766 2 243322 3589999999999988776533
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCeec-CCCCCCchHHHHHHHHHHCCCCCceeechhhhhcccccccchhhhcCCCCCC
Q 013861 238 VIMNDETVHQLCKQAVSQARAGADVVS-PSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFG 316 (435)
Q Consensus 238 ~IdND~Tv~~Lak~Avs~A~AGADiVA-PSDMMDGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRdA~~Sap~fg 316 (435)
+|| ++-.-.++|||.|- |. .|-.| ++.+- +.|-.
T Consensus 78 --~~d--------~~~~A~~aGAd~v~~p~--~d~~v--~~~ar-~~g~~------------------------------ 112 (224)
T 1vhc_A 78 --TAE--------QVVLAKSSGADFVVTPG--LNPKI--VKLCQ-DLNFP------------------------------ 112 (224)
T ss_dssp --SHH--------HHHHHHHHTCSEEECSS--CCHHH--HHHHH-HTTCC------------------------------
T ss_pred --eHH--------HHHHHHHCCCCEEEECC--CCHHH--HHHHH-HhCCC------------------------------
Confidence 232 23334567999873 32 33221 11111 12210
Q ss_pred CccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCch--HHHHHHHHhhC-CCCeEEEEechHHHHHHHHHH
Q 013861 317 DKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPY--LDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGA 393 (435)
Q Consensus 317 DRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~Y--LDIIr~vk~~~-~lPvaaYqVSGEYaMikaAa~ 393 (435)
+..-..+..|+.+. . +.|||+|. +=|+.+. ++.|+.++..+ ++|+.+
T Consensus 113 ----~i~Gv~t~~e~~~A-~---~~Gad~vk-------~Fpa~~~gG~~~lk~l~~~~~~ipvva--------------- 162 (224)
T 1vhc_A 113 ----ITPGVNNPMAIEIA-L---EMGISAVK-------FFPAEASGGVKMIKALLGPYAQLQIMP--------------- 162 (224)
T ss_dssp ----EECEECSHHHHHHH-H---HTTCCEEE-------ETTTTTTTHHHHHHHHHTTTTTCEEEE---------------
T ss_pred ----EEeccCCHHHHHHH-H---HCCCCEEE-------EeeCccccCHHHHHHHHhhCCCCeEEE---------------
Confidence 00113366676443 2 57999999 7786655 89999999988 699875
Q ss_pred CCCCchhhHHHHHHHHHHHh-cccEee
Q 013861 394 LKMIDEQRVMMESLMCLRRA-GADIIL 419 (435)
Q Consensus 394 ~G~ide~~~v~Esl~~ikRA-GAd~Ii 419 (435)
-|-|+.++ +..+..+ |++.|-
T Consensus 163 iGGI~~~N-----~~~~l~agga~~v~ 184 (224)
T 1vhc_A 163 TGGIGLHN-----IRDYLAIPNIVACG 184 (224)
T ss_dssp BSSCCTTT-----HHHHHTSTTBCCEE
T ss_pred ECCcCHHH-----HHHHHhcCCCEEEE
Confidence 67777753 3456777 887763
No 11
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=95.60 E-value=0.4 Score=46.19 Aligned_cols=155 Identities=21% Similarity=0.266 Sum_probs=98.4
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHH------------------HHHHHHHHCCC--eEEEe
Q 013861 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPR------------------TIWLLKDRYPD--LVIYT 217 (435)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~r------------------aIr~iK~~~Pd--l~Iit 217 (435)
..++.++.+.+.|..-+-| | +| .-|+.. ||++.| .++.+|+++++ +++++
T Consensus 35 ~~~~~~~~l~~~GaD~iEl-G-iP--fSDP~a------DGpvIq~a~~rAL~~G~~~~~~~~~v~~~r~~~~~~Pivlm~ 104 (271)
T 3nav_A 35 QSLAIMQTLIDAGADALEL-G-MP--FSDPLA------DGPTIQGANLRALAAKTTPDICFELIAQIRARNPETPIGLLM 104 (271)
T ss_dssp HHHHHHHHHHHTTCSSEEE-E-CC--CCCGGG------CCSHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTSCEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEE-C-CC--CCCCCC------CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEe
Confidence 4788899999999988777 7 46 356644 677766 57778877665 44443
Q ss_pred eecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCCCceeechhhhh
Q 013861 218 DVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKY 297 (435)
Q Consensus 218 DVcLc~YTshGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMMDGrVgAIR~aLD~~Gf~~v~IMSYSaKy 297 (435)
.... +..-| + .+-+-..++||+|.|--.|+=.......+++++++|...+.++
T Consensus 105 Y~n~-----------v~~~g-------~---~~f~~~~~~aGvdGvIipDlp~ee~~~~~~~~~~~gl~~I~lv------ 157 (271)
T 3nav_A 105 YANL-----------VYARG-------I---DDFYQRCQKAGVDSVLIADVPTNESQPFVAAAEKFGIQPIFIA------ 157 (271)
T ss_dssp CHHH-----------HHHTC-------H---HHHHHHHHHHTCCEEEETTSCGGGCHHHHHHHHHTTCEEEEEE------
T ss_pred cCcH-----------HHHHh-------H---HHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHcCCeEEEEE------
Confidence 2221 11112 1 3334456789999966668877889999999999999777777
Q ss_pred cccccccchhhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEe-cccC---CCcccCCCchHHHHHHHHhhCC
Q 013861 298 ASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILL-FSVL---GSQVKPGLPYLDVIRLLRDKYP 373 (435)
Q Consensus 298 ASafYGPFRdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM-~~~~---~~~VKPal~YLDIIr~vk~~~~ 373 (435)
.|....|=++++... +.++|- .|.. |.+-.-.....+.|+++|+.++
T Consensus 158 --------------------------ap~t~~eri~~i~~~---~~gfiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~~ 208 (271)
T 3nav_A 158 --------------------------PPTASDETLRAVAQL---GKGYTYLLSRAGVTGAETKANMPVHALLERLQQFDA 208 (271)
T ss_dssp --------------------------CTTCCHHHHHHHHHH---CCSCEEECCCC--------CCHHHHHHHHHHHHTTC
T ss_pred --------------------------CCCCCHHHHHHHHHH---CCCeEEEEeccCCCCcccCCchhHHHHHHHHHHhcC
Confidence 222334545555432 444443 2443 4442222335688999999999
Q ss_pred CCeEE
Q 013861 374 LPIAA 378 (435)
Q Consensus 374 lPvaa 378 (435)
+||++
T Consensus 209 ~Pv~v 213 (271)
T 3nav_A 209 PPALL 213 (271)
T ss_dssp CCEEE
T ss_pred CCEEE
Confidence 99997
No 12
>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5
Probab=95.55 E-value=0.6 Score=41.60 Aligned_cols=166 Identities=17% Similarity=0.154 Sum_probs=94.6
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCC
Q 013861 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDG 237 (435)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTshGHcGIv~e~g 237 (435)
...+.++.+.+.|...+.+- + ...|+.||+.+ ++-++.+..-+ | ..+|--+-
T Consensus 24 ~~~~~a~~~~~~Ga~~i~~~-------------------~--~~~i~~i~~~~-~~pv~~~~~~~-~-~~~~~~i~---- 75 (223)
T 1y0e_A 24 IMSKMALAAYEGGAVGIRAN-------------------T--KEDILAIKETV-DLPVIGIVKRD-Y-DHSDVFIT---- 75 (223)
T ss_dssp HHHHHHHHHHHHTCSEEEEE-------------------S--HHHHHHHHHHC-CSCEEEECBCC-C-TTCCCCBS----
T ss_pred cHHHHHHHHHHCCCeeeccC-------------------C--HHHHHHHHHhc-CCCEEeeeccC-C-CccccccC----
Confidence 46777788889999886431 1 36789999886 45455544322 1 12332221
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCeec--------CCCCCCchHHHHHHHHHHCCCCCceeechhhhhcccccccchhhh
Q 013861 238 VIMNDETVHQLCKQAVSQARAGADVVS--------PSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREAL 309 (435)
Q Consensus 238 ~IdND~Tv~~Lak~Avs~A~AGADiVA--------PSDMMDGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRdA~ 309 (435)
.+.+.++ ...++|||.|. |.+-..--|..+|+.+ .| ..++
T Consensus 76 --~~~~~i~-------~~~~~Gad~v~l~~~~~~~p~~~~~~~i~~~~~~~--~~---~~v~------------------ 123 (223)
T 1y0e_A 76 --ATSKEVD-------ELIESQCEVIALDATLQQRPKETLDELVSYIRTHA--PN---VEIM------------------ 123 (223)
T ss_dssp --CSHHHHH-------HHHHHTCSEEEEECSCSCCSSSCHHHHHHHHHHHC--TT---SEEE------------------
T ss_pred --CcHHHHH-------HHHhCCCCEEEEeeecccCcccCHHHHHHHHHHhC--CC---ceEE------------------
Confidence 1222222 24679999886 3211123345555543 13 3332
Q ss_pred cCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCC-cccC----CCchHHHHHHHHhhCCCCeEEEEechH
Q 013861 310 DSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGS-QVKP----GLPYLDVIRLLRDKYPLPIAAYQVSGE 384 (435)
Q Consensus 310 ~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~-~VKP----al~YLDIIr~vk~~~~lPvaaYqVSGE 384 (435)
.++.+..|+.+ + .+.|+|+||++..|. ..++ ..+-++.++++++.+++||.+
T Consensus 124 -------------~~~~t~~e~~~-~---~~~G~d~i~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~ipvia------ 180 (223)
T 1y0e_A 124 -------------ADIATVEEAKN-A---ARLGFDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSVDAKVIA------ 180 (223)
T ss_dssp -------------EECSSHHHHHH-H---HHTTCSEEECTTTTSSTTSTTCCTTHHHHHHHHHHHHHCCSEEEE------
T ss_pred -------------ecCCCHHHHHH-H---HHcCCCEEEeCCCcCcCCCCCCCCCcccHHHHHHHHhhCCCCEEE------
Confidence 01235666544 2 367999999654432 1222 345578999999999999875
Q ss_pred HHHHHHHHHCCCC-chhhHHHHHHHHHHHhcccEeeh
Q 013861 385 YSMIKAGGALKMI-DEQRVMMESLMCLRRAGADIILT 420 (435)
Q Consensus 385 YaMikaAa~~G~i-de~~~v~Esl~~ikRAGAd~IiT 420 (435)
.|-+ +.+ .+..+.++|||.++.
T Consensus 181 ---------~GGI~~~~-----~~~~~~~~Gad~v~v 203 (223)
T 1y0e_A 181 ---------EGNVITPD-----MYKRVMDLGVHCSVV 203 (223)
T ss_dssp ---------ESSCCSHH-----HHHHHHHTTCSEEEE
T ss_pred ---------ecCCCCHH-----HHHHHHHcCCCEEEE
Confidence 4555 543 344566789998763
No 13
>1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A*
Probab=95.43 E-value=0.16 Score=46.79 Aligned_cols=151 Identities=12% Similarity=0.113 Sum_probs=96.8
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCC
Q 013861 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDG 237 (435)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTshGHcGIv~e~g 237 (435)
.+++.++.+++.|++.|-+ . .|++.+ .+.|+.++++||++++-+++ +
T Consensus 29 ~~~~~~~al~~gGv~~iel-~-----~k~~~~----------~~~i~~l~~~~~~~~vgagt-v---------------- 75 (214)
T 1wbh_A 29 HAVPMAKALVAGGVRVLNV-T-----LRTECA----------VDAIRAIAKEVPEAIVGAGT-V---------------- 75 (214)
T ss_dssp GHHHHHHHHHHTTCCEEEE-E-----SCSTTH----------HHHHHHHHHHCTTSEEEEES-C----------------
T ss_pred HHHHHHHHHHHcCCCEEEE-e-----CCChhH----------HHHHHHHHHHCcCCEEeeCE-E----------------
Confidence 5889999999999997666 2 243322 24899999999998876643 1
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCCCceeechhhhhcccccccchhhhcCCCCCCC
Q 013861 238 VIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGD 317 (435)
Q Consensus 238 ~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMMDGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRdA~~Sap~fgD 317 (435)
++|| ++-.-.++|||.|- |.-.|-.|...++. .|- .+ - | |
T Consensus 76 -i~~d--------~~~~A~~aGAd~v~-~p~~d~~v~~~~~~---~g~---~~------------i---------~--G- 115 (214)
T 1wbh_A 76 -LNPQ--------QLAEVTEAGAQFAI-SPGLTEPLLKAATE---GTI---PL------------I---------P--G- 115 (214)
T ss_dssp -CSHH--------HHHHHHHHTCSCEE-ESSCCHHHHHHHHH---SSS---CE------------E---------E--E-
T ss_pred -EEHH--------HHHHHHHcCCCEEE-cCCCCHHHHHHHHH---hCC---CE------------E---------E--e-
Confidence 2343 22233467998763 22345444333332 221 00 0 0 1
Q ss_pred ccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCch--HHHHHHHHhhC-CCCeEEEEechHHHHHHHHHHC
Q 013861 318 KKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPY--LDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGAL 394 (435)
Q Consensus 318 RktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~Y--LDIIr~vk~~~-~lPvaaYqVSGEYaMikaAa~~ 394 (435)
..+..|+.+.. +.|||+|. +=|+.+. ++.|+.++..+ ++|+.+ -
T Consensus 116 -------~~t~~e~~~A~----~~Gad~v~-------~Fpa~~~gG~~~lk~i~~~~~~ipvva---------------i 162 (214)
T 1wbh_A 116 -------ISTVSELMLGM----DYGLKEFK-------FFPAEANGGVKALQAIAGPFSQVRFCP---------------T 162 (214)
T ss_dssp -------ESSHHHHHHHH----HTTCCEEE-------ETTTTTTTHHHHHHHHHTTCTTCEEEE---------------B
T ss_pred -------cCCHHHHHHHH----HCCCCEEE-------EecCccccCHHHHHHHhhhCCCCeEEE---------------E
Confidence 23566764432 57999999 7786665 89999999998 799875 5
Q ss_pred CCCchhhHHHHHHHHHHHh-cccEee
Q 013861 395 KMIDEQRVMMESLMCLRRA-GADIIL 419 (435)
Q Consensus 395 G~ide~~~v~Esl~~ikRA-GAd~Ii 419 (435)
|-|+.+ .+..+..+ |++.|-
T Consensus 163 GGI~~~-----n~~~~l~agg~~~v~ 183 (214)
T 1wbh_A 163 GGISPA-----NYRDYLALKSVLCIG 183 (214)
T ss_dssp SSCCTT-----THHHHHTSTTBSCEE
T ss_pred CCCCHH-----HHHHHHhcCCCeEEE
Confidence 777765 34457777 887764
No 14
>1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1
Probab=95.18 E-value=0.15 Score=47.45 Aligned_cols=150 Identities=14% Similarity=0.204 Sum_probs=97.9
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCC
Q 013861 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDG 237 (435)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTshGHcGIv~e~g 237 (435)
.+++.++.+++.|++.|-+ . .|++.+ .+.|+.++++||++++-+++.+
T Consensus 39 ~~~~~~~al~~gGv~~iel-~-----~k~~~~----------~~~i~~l~~~~~~~~igagtvl---------------- 86 (225)
T 1mxs_A 39 DILPLADALAAGGIRTLEV-T-----LRSQHG----------LKAIQVLREQRPELCVGAGTVL---------------- 86 (225)
T ss_dssp GHHHHHHHHHHTTCCEEEE-E-----SSSTHH----------HHHHHHHHHHCTTSEEEEECCC----------------
T ss_pred HHHHHHHHHHHCCCCEEEE-e-----cCCccH----------HHHHHHHHHhCcccEEeeCeEe----------------
Confidence 4889999999999997666 2 243322 3479999999999888665421
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCee-cCCCCCCchHHHHHHHHHHCCCCCceeechhhhhcccccccchhhhcCCCCCC
Q 013861 238 VIMNDETVHQLCKQAVSQARAGADVV-SPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFG 316 (435)
Q Consensus 238 ~IdND~Tv~~Lak~Avs~A~AGADiV-APSDMMDGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRdA~~Sap~fg 316 (435)
+|| ++-.-.++|||.| +| -.|-.|...++. .|. +.+ | |
T Consensus 87 --~~d--------~~~~A~~aGAd~v~~p--~~d~~v~~~~~~---~g~---------------------~~i---~--G 125 (225)
T 1mxs_A 87 --DRS--------MFAAVEAAGAQFVVTP--GITEDILEAGVD---SEI---------------------PLL---P--G 125 (225)
T ss_dssp --SHH--------HHHHHHHHTCSSEECS--SCCHHHHHHHHH---CSS---------------------CEE---C--E
T ss_pred --eHH--------HHHHHHHCCCCEEEeC--CCCHHHHHHHHH---hCC---------------------CEE---E--e
Confidence 333 2233346799976 44 345555444433 331 000 1 2
Q ss_pred CccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCch--HHHHHHHHhhC-CCCeEEEEechHHHHHHHHHH
Q 013861 317 DKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPY--LDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGA 393 (435)
Q Consensus 317 DRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~Y--LDIIr~vk~~~-~lPvaaYqVSGEYaMikaAa~ 393 (435)
..+..|+.+. . +.|||+|. +=|+.+. ++.|+.++..+ ++|+.+
T Consensus 126 --------~~t~~e~~~A-~---~~Gad~vk-------~FPa~~~~G~~~lk~i~~~~~~ipvva--------------- 171 (225)
T 1mxs_A 126 --------ISTPSEIMMG-Y---ALGYRRFK-------LFPAEISGGVAAIKAFGGPFGDIRFCP--------------- 171 (225)
T ss_dssp --------ECSHHHHHHH-H---TTTCCEEE-------ETTHHHHTHHHHHHHHHTTTTTCEEEE---------------
T ss_pred --------eCCHHHHHHH-H---HCCCCEEE-------EccCccccCHHHHHHHHhhCCCCeEEE---------------
Confidence 3356676443 2 67999999 7786544 79999999988 799976
Q ss_pred CCCCchhhHHHHHHHHHHH-hcccEee
Q 013861 394 LKMIDEQRVMMESLMCLRR-AGADIIL 419 (435)
Q Consensus 394 ~G~ide~~~v~Esl~~ikR-AGAd~Ii 419 (435)
-|-|+.++ +..+.+ +||+.+.
T Consensus 172 iGGI~~~N-----~~~~l~~~Ga~~v~ 193 (225)
T 1mxs_A 172 TGGVNPAN-----VRNYMALPNVMCVG 193 (225)
T ss_dssp BSSCCTTT-----HHHHHHSTTBCCEE
T ss_pred ECCCCHHH-----HHHHHhccCCEEEE
Confidence 57787764 345677 6899874
No 15
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=94.75 E-value=1.2 Score=42.68 Aligned_cols=185 Identities=21% Similarity=0.229 Sum_probs=110.0
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHH------------------HHHHHHHHCCC--eEEEe
Q 013861 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPR------------------TIWLLKDRYPD--LVIYT 217 (435)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~r------------------aIr~iK~~~Pd--l~Iit 217 (435)
...+.++.+.+.|+.-+-| | +| .-|+.. ||++.+ .++.+|+.+++ +++++
T Consensus 33 ~~~~~~~~l~~~GaD~iEl-g-iP--fSDP~a------DGp~Iq~a~~~AL~~G~~~~~~~~~v~~ir~~~~~~Pivlm~ 102 (267)
T 3vnd_A 33 LSLKIIQTLVDNGADALEL-G-FP--FSDPLA------DGPVIQGANLRSLAAGTTSSDCFDIITKVRAQHPDMPIGLLL 102 (267)
T ss_dssp HHHHHHHHHHHTTCSSEEE-E-CC--CSCCTT------CCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEE-C-CC--CCCCCC------CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEe
Confidence 4788999999999998877 7 46 355543 455544 45566666444 44442
Q ss_pred eecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCCCceeechhhhh
Q 013861 218 DVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKY 297 (435)
Q Consensus 218 DVcLc~YTshGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMMDGrVgAIR~aLD~~Gf~~v~IMSYSaKy 297 (435)
-.. |. + .-| +.+-+-..++||+|.|--.|+=......+++++.++|...+.++
T Consensus 103 Y~n--pv--------~-~~g----------~e~f~~~~~~aGvdgvii~Dlp~ee~~~~~~~~~~~gl~~i~li------ 155 (267)
T 3vnd_A 103 YAN--LV--------F-ANG----------IDEFYTKAQAAGVDSVLIADVPVEESAPFSKAAKAHGIAPIFIA------ 155 (267)
T ss_dssp CHH--HH--------H-HHC----------HHHHHHHHHHHTCCEEEETTSCGGGCHHHHHHHHHTTCEEECEE------
T ss_pred cCc--HH--------H-Hhh----------HHHHHHHHHHcCCCEEEeCCCCHhhHHHHHHHHHHcCCeEEEEE------
Confidence 111 10 0 001 23344456789999976668877888999999999998777666
Q ss_pred cccccccchhhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEecccC---CCcccCCCchHHHHHHHHhhCCC
Q 013861 298 ASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVL---GSQVKPGLPYLDVIRLLRDKYPL 374 (435)
Q Consensus 298 ASafYGPFRdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~---~~~VKPal~YLDIIr~vk~~~~l 374 (435)
.|....|-++++... ..|- +.+.|+. |.+-.-.....+.|+++|+.+++
T Consensus 156 --------------------------aP~t~~eri~~i~~~-~~gf-vY~vS~~GvTG~~~~~~~~~~~~v~~vr~~~~~ 207 (267)
T 3vnd_A 156 --------------------------PPNADADTLKMVSEQ-GEGY-TYLLSRAGVTGTESKAGEPIENILTQLAEFNAP 207 (267)
T ss_dssp --------------------------CTTCCHHHHHHHHHH-CCSC-EEESCCCCCC--------CHHHHHHHHHTTTCC
T ss_pred --------------------------CCCCCHHHHHHHHHh-CCCc-EEEEecCCCCCCccCCcHHHHHHHHHHHHhcCC
Confidence 333334555555443 3333 3333555 45521122367999999999999
Q ss_pred CeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEee--hhcHHHH
Q 013861 375 PIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIIL--TYFALQA 426 (435)
Q Consensus 375 PvaaYqVSGEYaMikaAa~~G~ide~~~v~Esl~~ikRAGAd~Ii--TYfA~~~ 426 (435)
||++ -|-|... |.......+|||.+| |.+.+.+
T Consensus 208 pv~v---------------GfGI~~~----e~~~~~~~~gADgvVVGSaiv~~i 242 (267)
T 3vnd_A 208 PPLL---------------GFGIAEP----EQVRAAIKAGAAGAISGSAVVKII 242 (267)
T ss_dssp CEEE---------------CSSCCSH----HHHHHHHHTTCSEEEECHHHHHHH
T ss_pred CEEE---------------ECCcCCH----HHHHHHHHcCCCEEEECHHHHHHH
Confidence 9986 2334322 233335568999887 4444443
No 16
>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}
Probab=94.74 E-value=0.59 Score=43.92 Aligned_cols=156 Identities=14% Similarity=0.206 Sum_probs=89.4
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHH------------------HHHHHHHHCCCeEEEeee
Q 013861 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPR------------------TIWLLKDRYPDLVIYTDV 219 (435)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~r------------------aIr~iK~~~Pdl~IitDV 219 (435)
..++.++.+.+.|+..+.| |. |- -|+. .||++.+ .++.+|+.+|++-|+.
T Consensus 32 ~~~~~~~~l~~~G~D~IEl-G~-P~--sdP~------adgp~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~~~Pi~~-- 99 (262)
T 2ekc_A 32 TSLKAFKEVLKNGTDILEI-GF-PF--SDPV------ADGPTIQVAHEVALKNGIRFEDVLELSETLRKEFPDIPFLL-- 99 (262)
T ss_dssp HHHHHHHHHHHTTCSEEEE-EC-CC--SCCT------TSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTSCEEE--
T ss_pred HHHHHHHHHHHcCCCEEEE-CC-CC--CCcc------cccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCCCEEE--
Confidence 4678889999999999888 73 52 2331 1455543 3889998887644433
Q ss_pred cccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCC-eecCCCCCCchHHHHHHHHHHCCCCCceeechhhhhc
Q 013861 220 ALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGAD-VVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYA 298 (435)
Q Consensus 220 cLc~YTshGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGAD-iVAPSDMMDGrVgAIR~aLD~~Gf~~v~IMSYSaKyA 298 (435)
+ .|. ..+...| ++ +-+-..+++|+| ++.| |+-...+...++.+.++|+.-+.+++-+
T Consensus 100 -m-~y~-----n~v~~~g-------~~---~f~~~~~~aG~dgvii~-dl~~ee~~~~~~~~~~~gl~~i~l~~p~---- 157 (262)
T 2ekc_A 100 -M-TYY-----NPIFRIG-------LE---KFCRLSREKGIDGFIVP-DLPPEEAEELKAVMKKYVLSFVPLGAPT---- 157 (262)
T ss_dssp -E-CCH-----HHHHHHC-------HH---HHHHHHHHTTCCEEECT-TCCHHHHHHHHHHHHHTTCEECCEECTT----
T ss_pred -E-ecC-----cHHHHhh-------HH---HHHHHHHHcCCCEEEEC-CCCHHHHHHHHHHHHHcCCcEEEEeCCC----
Confidence 1 220 0000001 12 233335689999 5555 7777788888999999997545443322
Q ss_pred ccccccchhhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEecc---cCCCcccCCC-c-hHHHHHHHHhhCC
Q 013861 299 SSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFS---VLGSQVKPGL-P-YLDVIRLLRDKYP 373 (435)
Q Consensus 299 SafYGPFRdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~---~~~~~VKPal-~-YLDIIr~vk~~~~ 373 (435)
...|-+++.... .+|...++ | +.|.+ +|.. . -.+.|+++|+.++
T Consensus 158 ----------------------------t~~~rl~~ia~~-a~gfiy~v-s~~g~TG~~-~~~~~~~~~~~v~~vr~~~~ 206 (262)
T 2ekc_A 158 ----------------------------STRKRIKLICEA-ADEMTYFV-SVTGTTGAR-EKLPYERIKKKVEEYRELCD 206 (262)
T ss_dssp ----------------------------CCHHHHHHHHHH-CSSCEEEE-SSCC----------CHHHHHHHHHHHHHCC
T ss_pred ----------------------------CCHHHHHHHHHh-CCCCEEEE-ecCCccCCC-CCcCcccHHHHHHHHHhhcC
Confidence 233444554443 35553333 4 34555 3432 2 3589999999999
Q ss_pred CCeEE
Q 013861 374 LPIAA 378 (435)
Q Consensus 374 lPvaa 378 (435)
+||++
T Consensus 207 ~pv~v 211 (262)
T 2ekc_A 207 KPVVV 211 (262)
T ss_dssp SCEEE
T ss_pred CCEEE
Confidence 99976
No 17
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=94.61 E-value=0.24 Score=43.81 Aligned_cols=163 Identities=20% Similarity=0.231 Sum_probs=97.5
Q ss_pred HHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCc
Q 013861 159 LVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGV 238 (435)
Q Consensus 159 l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTshGHcGIv~e~g~ 238 (435)
.++.++.+. .|+.-+.+ |. |.. -..| ...|+.||+.+|++-|++|.-+. ++
T Consensus 15 ~~~~~~~~~-~~~diie~-G~-p~~----------~~~g--~~~i~~ir~~~~~~~i~~~~~~~-------------~~- 65 (211)
T 3f4w_A 15 AMVFMDKVV-DDVDIIEV-GT-PFL----------IREG--VNAIKAIKEKYPHKEVLADAKIM-------------DG- 65 (211)
T ss_dssp HHHHHHHHG-GGCSEEEE-CH-HHH----------HHHT--THHHHHHHHHCTTSEEEEEEEEC-------------SC-
T ss_pred HHHHHHHhh-cCccEEEe-Cc-HHH----------Hhcc--HHHHHHHHHhCCCCEEEEEEEec-------------cc-
Confidence 555566553 46666555 43 210 0112 36899999999998886654331 11
Q ss_pred cccHHHHHHHHHHHHHHHHcCCCeecCCCCCC-chHHHHHHHHHHCCCCCceeechhhhhcccccccchhhhcCCCCCCC
Q 013861 239 IMNDETVHQLCKQAVSQARAGADVVSPSDMMD-GRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGD 317 (435)
Q Consensus 239 IdND~Tv~~Lak~Avs~A~AGADiVAPSDMMD-GrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRdA~~Sap~fgD 317 (435)
.++ .+-..+++|||.|.--+.-. ..+..+.+.+.+.|. ++.+ . +.+|
T Consensus 66 ---~~~------~~~~~~~~Gad~v~v~~~~~~~~~~~~~~~~~~~g~-~~~v-~--------~~~~------------- 113 (211)
T 3f4w_A 66 ---GHF------ESQLLFDAGADYVTVLGVTDVLTIQSCIRAAKEAGK-QVVV-D--------MICV------------- 113 (211)
T ss_dssp ---HHH------HHHHHHHTTCSEEEEETTSCHHHHHHHHHHHHHHTC-EEEE-E--------CTTC-------------
T ss_pred ---hHH------HHHHHHhcCCCEEEEeCCCChhHHHHHHHHHHHcCC-eEEE-E--------ecCC-------------
Confidence 222 13345789999887655543 456777777777774 3322 1 1111
Q ss_pred ccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCC-------chHHHHHHHHhhC-CCCeEEEEechHHHHHH
Q 013861 318 KKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGL-------PYLDVIRLLRDKY-PLPIAAYQVSGEYSMIK 389 (435)
Q Consensus 318 RktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal-------~YLDIIr~vk~~~-~lPvaaYqVSGEYaMik 389 (435)
.+..|.++++. +.|+|+|. |-|+. .-++.++++|+.+ ++|+.+ +
T Consensus 114 --------~t~~~~~~~~~---~~g~d~i~-------v~~g~~g~~~~~~~~~~i~~l~~~~~~~~i~~---~------- 165 (211)
T 3f4w_A 114 --------DDLPARVRLLE---EAGADMLA-------VHTGTDQQAAGRKPIDDLITMLKVRRKARIAV---A------- 165 (211)
T ss_dssp --------SSHHHHHHHHH---HHTCCEEE-------EECCHHHHHTTCCSHHHHHHHHHHCSSCEEEE---E-------
T ss_pred --------CCHHHHHHHHH---HcCCCEEE-------EcCCCcccccCCCCHHHHHHHHHHcCCCcEEE---E-------
Confidence 23344444443 56999998 55541 1478999999986 788854 3
Q ss_pred HHHHCCCCchhhHHHHHHHHHHHhcccEeeh
Q 013861 390 AGGALKMIDEQRVMMESLMCLRRAGADIILT 420 (435)
Q Consensus 390 aAa~~G~ide~~~v~Esl~~ikRAGAd~IiT 420 (435)
|-++. |.+..+.++|||.|+.
T Consensus 166 -----gGI~~-----~~~~~~~~~Gad~vvv 186 (211)
T 3f4w_A 166 -----GGISS-----QTVKDYALLGPDVVIV 186 (211)
T ss_dssp -----SSCCT-----TTHHHHHTTCCSEEEE
T ss_pred -----CCCCH-----HHHHHHHHcCCCEEEE
Confidence 33443 3556678899999874
No 18
>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A
Probab=94.53 E-value=0.34 Score=42.76 Aligned_cols=154 Identities=16% Similarity=0.124 Sum_probs=92.9
Q ss_pred chhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCC-CeEEEeeecccCCCCCCccee
Q 013861 154 GWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYP-DLVIYTDVALDPYSSDGHDGI 232 (435)
Q Consensus 154 s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~P-dl~IitDVcLc~YTshGHcGI 232 (435)
+.+ .+.+.++.+.+.|+..+-+--..+ -..+.|+.+|+.+| ++.|-.+.+.
T Consensus 20 ~~~-~~~~~~~~~~~~G~~~iev~~~~~----------------~~~~~i~~ir~~~~~~~~ig~~~v~----------- 71 (205)
T 1wa3_A 20 SVE-EAKEKALAVFEGGVHLIEITFTVP----------------DADTVIKELSFLKEKGAIIGAGTVT----------- 71 (205)
T ss_dssp SHH-HHHHHHHHHHHTTCCEEEEETTST----------------THHHHHHHTHHHHHTTCEEEEESCC-----------
T ss_pred CHH-HHHHHHHHHHHCCCCEEEEeCCCh----------------hHHHHHHHHHHHCCCCcEEEecccC-----------
Confidence 344 478888889999999875421101 12467999999887 6666554332
Q ss_pred ecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCCCceeechhhhhcccccccchhhhcCC
Q 013861 233 VREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSN 312 (435)
Q Consensus 233 v~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMMDGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRdA~~Sa 312 (435)
|-+ ++....++|||+| =+..++..+ -+...+. ++++|. |
T Consensus 72 --------~~~-------~~~~a~~~Gad~i-v~~~~~~~~---~~~~~~~---g~~vi~----------g--------- 110 (205)
T 1wa3_A 72 --------SVE-------QCRKAVESGAEFI-VSPHLDEEI---SQFCKEK---GVFYMP----------G--------- 110 (205)
T ss_dssp --------SHH-------HHHHHHHHTCSEE-ECSSCCHHH---HHHHHHH---TCEEEC----------E---------
T ss_pred --------CHH-------HHHHHHHcCCCEE-EcCCCCHHH---HHHHHHc---CCcEEC----------C---------
Confidence 112 2333345999999 555555332 2233333 345552 0
Q ss_pred CCCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCc-hHHHHHHHHhhC-CCCeEEEEechHHHHHHH
Q 013861 313 PRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLP-YLDVIRLLRDKY-PLPIAAYQVSGEYSMIKA 390 (435)
Q Consensus 313 p~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~-YLDIIr~vk~~~-~lPvaaYqVSGEYaMika 390 (435)
..+..|+.+. ++-|+|++. +.|+.. =++.++++++.+ ++|+.+
T Consensus 111 ------------~~t~~e~~~a----~~~Gad~vk-------~~~~~~~g~~~~~~l~~~~~~~pvia------------ 155 (205)
T 1wa3_A 111 ------------VMTPTELVKA----MKLGHTILK-------LFPGEVVGPQFVKAMKGPFPNVKFVP------------ 155 (205)
T ss_dssp ------------ECSHHHHHHH----HHTTCCEEE-------ETTHHHHHHHHHHHHHTTCTTCEEEE------------
T ss_pred ------------cCCHHHHHHH----HHcCCCEEE-------EcCccccCHHHHHHHHHhCCCCcEEE------------
Confidence 0134454433 467999998 777422 267788888888 788864
Q ss_pred HHHCCCCchhhHHHHHHHHHHHhcccEee
Q 013861 391 GGALKMIDEQRVMMESLMCLRRAGADIIL 419 (435)
Q Consensus 391 Aa~~G~ide~~~v~Esl~~ikRAGAd~Ii 419 (435)
.|-++.+ .+..+..+|||.+.
T Consensus 156 ---~GGI~~~-----~~~~~~~~Ga~~v~ 176 (205)
T 1wa3_A 156 ---TGGVNLD-----NVCEWFKAGVLAVG 176 (205)
T ss_dssp ---BSSCCTT-----THHHHHHHTCSCEE
T ss_pred ---cCCCCHH-----HHHHHHHCCCCEEE
Confidence 5556643 44566788999875
No 19
>3eol_A Isocitrate lyase; seattle structural center for infectious disease, ssgcid; 2.00A {Brucella melitensis} PDB: 3oq8_A 3e5b_A 3p0x_A*
Probab=94.32 E-value=0.42 Score=49.39 Aligned_cols=153 Identities=20% Similarity=0.201 Sum_probs=95.3
Q ss_pred HHHHHHHHcCCCeecCCCCCC--------------------chHHHHHHHHHHCCCCCceeechhhhhcccccccchhhh
Q 013861 250 KQAVSQARAGADVVSPSDMMD--------------------GRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREAL 309 (435)
Q Consensus 250 k~Avs~A~AGADiVAPSDMMD--------------------GrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRdA~ 309 (435)
+..-.+.+|||--|--.|-.- .||.|+|.+.|..|- +.-|++-+--.+..+..-==|--
T Consensus 164 rtVk~~~~AGaAGi~IEDQ~~~~KkCGH~~gk~lvp~ee~v~rI~AAr~A~~~~g~-d~vIiARTDA~~a~l~~s~~d~r 242 (433)
T 3eol_A 164 EIMKAYIEAGAAGVHFEDQLASEKKCGHLGGKVLIPTAAHIRNLNAARLAADVMGT-PTLIVARTDAEAAKLLTSDIDER 242 (433)
T ss_dssp HHHHHHHHHTCSEEEEESBCC---------CCEECCHHHHHHHHHHHHHHHHHHTC-CCEEEEEECTTTCCEESCCCSTT
T ss_pred HHHHHHHHcCCeEEEEecCCCCCCcCCCCCCCcccCHHHHHHHHHHHHHHHHhcCC-CEEEEEEcCCccccccccCcccc
Confidence 334456778886666555442 489999999988784 78888776444332211000000
Q ss_pred cCCCCC--CCcc---ccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhh----CCCCeEEEE
Q 013861 310 DSNPRF--GDKK---TYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDK----YPLPIAAYQ 380 (435)
Q Consensus 310 ~Sap~f--gDRk---tYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~----~~lPvaaYq 380 (435)
|-..-. |.|. -|+.. ...+|||+.+..=.+ |||+|+ +.|..+-++-|+++.+. +++++-+|+
T Consensus 243 d~~fl~g~g~r~~eG~y~~~-~gld~AI~Ra~AY~~-GAD~If-------~e~~~~~~eei~~f~~~v~~~~P~~~L~~~ 313 (433)
T 3eol_A 243 DQPFVDYEAGRTAEGFYQVK-NGIEPCIARAIAYAP-YCDLIW-------METSKPDLAQARRFAEAVHKAHPGKLLAYN 313 (433)
T ss_dssp TGGGBCSSSCBCTTCCEEBC-CSHHHHHHHHHHHGG-GCSEEE-------ECCSSCCHHHHHHHHHHHHHHSTTCCEEEE
T ss_pred cccceeccCccccccccccc-CCHHHHHHHHHHHHh-cCCEEE-------EeCCCCCHHHHHHHHHHhcccCCCcccccC
Confidence 000000 1111 14333 348999999987665 999999 99998889988877764 567789999
Q ss_pred echHHHHHHHHHHCCCCchhhHHHHHH-HHHHHhcccEeeh
Q 013861 381 VSGEYSMIKAGGALKMIDEQRVMMESL-MCLRRAGADIILT 420 (435)
Q Consensus 381 VSGEYaMikaAa~~G~ide~~~v~Esl-~~ikRAGAd~IiT 420 (435)
-|-.|...+. ++.++ ++++ .-|..+|..+|+-
T Consensus 314 ~sPsfnw~~~------~~~~~--~~~f~~eLa~lGv~~v~~ 346 (433)
T 3eol_A 314 CSPSFNWKKN------LDDAT--IAKFQRELGAMGYKFQFI 346 (433)
T ss_dssp CCSSSCHHHH------SCHHH--HHHHHHHHHHHTEEEEEE
T ss_pred CCCCCccccc------CChhH--HhHHHHHHHHcCCeEEEe
Confidence 9887777553 34332 2333 5677778887763
No 20
>2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A
Probab=93.97 E-value=0.93 Score=41.30 Aligned_cols=149 Identities=19% Similarity=0.225 Sum_probs=94.3
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCC
Q 013861 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDG 237 (435)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTshGHcGIv~e~g 237 (435)
.+++.++.+++.|++.|-+ . .|++ + ..+.|+.+++ |++.+-+++.+
T Consensus 26 ~~~~~~~~l~~gGv~~iel-~-----~k~~--------~--~~~~i~~~~~--~~~~~gag~vl---------------- 71 (207)
T 2yw3_A 26 DLLGLARVLEEEGVGALEI-T-----LRTE--------K--GLEALKALRK--SGLLLGAGTVR---------------- 71 (207)
T ss_dssp CHHHHHHHHHHTTCCEEEE-E-----CSST--------H--HHHHHHHHTT--SSCEEEEESCC----------------
T ss_pred HHHHHHHHHHHcCCCEEEE-e-----CCCh--------H--HHHHHHHHhC--CCCEEEeCeEe----------------
Confidence 4788999999999997765 2 2322 1 2467888888 88776665422
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCCCceeechhhhhcccccccchhhhcCCCCCCC
Q 013861 238 VIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGD 317 (435)
Q Consensus 238 ~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMMDGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRdA~~Sap~fgD 317 (435)
+|| ++-.-.++|||.|- +.-.|-.+...++. .|.. +.| |
T Consensus 72 --~~d--------~~~~A~~~GAd~v~-~~~~d~~v~~~~~~---~g~~---------------~i~-----------G- 110 (207)
T 2yw3_A 72 --SPK--------EAEAALEAGAAFLV-SPGLLEEVAALAQA---RGVP---------------YLP-----------G- 110 (207)
T ss_dssp --SHH--------HHHHHHHHTCSEEE-ESSCCHHHHHHHHH---HTCC---------------EEE-----------E-
T ss_pred --eHH--------HHHHHHHcCCCEEE-cCCCCHHHHHHHHH---hCCC---------------EEe-----------c-
Confidence 232 12223457999874 33456555443333 3310 000 1
Q ss_pred ccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCch--HHHHHHHHhhC-CCCeEEEEechHHHHHHHHHHC
Q 013861 318 KKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPY--LDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGAL 394 (435)
Q Consensus 318 RktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~Y--LDIIr~vk~~~-~lPvaaYqVSGEYaMikaAa~~ 394 (435)
..+..|+.+.. +.|||+|. +-|+-.. ++.|+.++..+ ++|+.+ -
T Consensus 111 -------~~t~~e~~~A~----~~Gad~v~-------~fpa~~~gG~~~lk~l~~~~~~ipvva---------------i 157 (207)
T 2yw3_A 111 -------VLTPTEVERAL----ALGLSALK-------FFPAEPFQGVRVLRAYAEVFPEVRFLP---------------T 157 (207)
T ss_dssp -------ECSHHHHHHHH----HTTCCEEE-------ETTTTTTTHHHHHHHHHHHCTTCEEEE---------------B
T ss_pred -------CCCHHHHHHHH----HCCCCEEE-------EecCccccCHHHHHHHHhhCCCCcEEE---------------e
Confidence 23667765443 46999999 6665444 68899999988 799976 5
Q ss_pred CCCchhhHHHHHHHHHHHhcccEee
Q 013861 395 KMIDEQRVMMESLMCLRRAGADIIL 419 (435)
Q Consensus 395 G~ide~~~v~Esl~~ikRAGAd~Ii 419 (435)
|-|+.+ .+..+..+||+.+.
T Consensus 158 GGI~~~-----n~~~~l~aGa~~va 177 (207)
T 2yw3_A 158 GGIKEE-----HLPHYAALPNLLAV 177 (207)
T ss_dssp SSCCGG-----GHHHHHTCSSBSCE
T ss_pred CCCCHH-----HHHHHHhCCCcEEE
Confidence 777764 44567889999765
No 21
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}
Probab=93.32 E-value=1.8 Score=41.02 Aligned_cols=151 Identities=15% Similarity=0.185 Sum_probs=96.5
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCC
Q 013861 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDG 237 (435)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTshGHcGIv~e~g 237 (435)
.+++.++.+++-|++.+-+ . .+++. -.++|+.|+++||+++|-+.
T Consensus 47 ~a~~~a~al~~gGi~~iEv-t-----~~t~~----------a~e~I~~l~~~~~~~~iGaG------------------- 91 (232)
T 4e38_A 47 DIIPLGKVLAENGLPAAEI-T-----FRSDA----------AVEAIRLLRQAQPEMLIGAG------------------- 91 (232)
T ss_dssp GHHHHHHHHHHTTCCEEEE-E-----TTSTT----------HHHHHHHHHHHCTTCEEEEE-------------------
T ss_pred HHHHHHHHHHHCCCCEEEE-e-----CCCCC----------HHHHHHHHHHhCCCCEEeEC-------------------
Confidence 5899999999999998877 2 12221 23799999999999877642
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCCCceeechhhhhcccccccchhhhcCCCCCCC
Q 013861 238 VIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGD 317 (435)
Q Consensus 238 ~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMMDGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRdA~~Sap~fgD 317 (435)
.|.+ .+++-...+||||+|.-.. .|-.|... +. +. ++.+|.
T Consensus 92 TVlt-------~~~a~~Ai~AGA~fIvsP~-~~~~vi~~--~~-~~---gi~~ip------------------------- 132 (232)
T 4e38_A 92 TILN-------GEQALAAKEAGATFVVSPG-FNPNTVRA--CQ-EI---GIDIVP------------------------- 132 (232)
T ss_dssp CCCS-------HHHHHHHHHHTCSEEECSS-CCHHHHHH--HH-HH---TCEEEC-------------------------
T ss_pred CcCC-------HHHHHHHHHcCCCEEEeCC-CCHHHHHH--HH-Hc---CCCEEc-------------------------
Confidence 1222 2345556789999885322 23222211 11 11 122111
Q ss_pred ccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCch--HHHHHHHHhhC-CCCeEEEEechHHHHHHHHHHC
Q 013861 318 KKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPY--LDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGAL 394 (435)
Q Consensus 318 RktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~Y--LDIIr~vk~~~-~lPvaaYqVSGEYaMikaAa~~ 394 (435)
...+..|+++. ++-|||+|- +=|+.+. ++.|+.++.-+ ++|+.+ -
T Consensus 133 ------Gv~TptEi~~A----~~~Gad~vK-------~FPa~~~gG~~~lkal~~p~p~ip~~p---------------t 180 (232)
T 4e38_A 133 ------GVNNPSTVEAA----LEMGLTTLK-------FFPAEASGGISMVKSLVGPYGDIRLMP---------------T 180 (232)
T ss_dssp ------EECSHHHHHHH----HHTTCCEEE-------ECSTTTTTHHHHHHHHHTTCTTCEEEE---------------B
T ss_pred ------CCCCHHHHHHH----HHcCCCEEE-------ECcCccccCHHHHHHHHHHhcCCCeee---------------E
Confidence 12366777666 367999999 8887765 79999999987 588875 4
Q ss_pred CCCchhhHHHHHHHHHHHhcccEee
Q 013861 395 KMIDEQRVMMESLMCLRRAGADIIL 419 (435)
Q Consensus 395 G~ide~~~v~Esl~~ikRAGAd~Ii 419 (435)
|-++.+ .+..+..+||...+
T Consensus 181 GGI~~~-----n~~~~l~aGa~~~v 200 (232)
T 4e38_A 181 GGITPS-----NIDNYLAIPQVLAC 200 (232)
T ss_dssp SSCCTT-----THHHHHTSTTBCCE
T ss_pred cCCCHH-----HHHHHHHCCCeEEE
Confidence 556654 34566677877654
No 22
>3lg3_A Isocitrate lyase; conserved, CD, proteomics evidence (cytopl periplasmic), drug target functions; 1.40A {Yersinia pestis} SCOP: c.1.12.7 PDB: 1igw_A
Probab=93.23 E-value=1 Score=46.64 Aligned_cols=148 Identities=21% Similarity=0.247 Sum_probs=93.1
Q ss_pred HHHHHHHcCCCeecCCCCC--------------------CchHHHHHHHHHHCCCCCceeechhhhhccccc----ccch
Q 013861 251 QAVSQARAGADVVSPSDMM--------------------DGRVGAIRAALDAEGFQHVSIMSYTAKYASSFY----GPFR 306 (435)
Q Consensus 251 ~Avs~A~AGADiVAPSDMM--------------------DGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafY----GPFR 306 (435)
..-.+++|||--|--.|-. =+||.|+|++.|..|- +.-|++-+--.++.+- -| |
T Consensus 172 tv~~~~~aGaaGi~IEDq~~~~KkCGh~~gk~lv~~~e~~~rI~Aa~~A~~~~~~-d~~IiARTDa~aa~l~~s~~d~-r 249 (435)
T 3lg3_A 172 LMKAMIEAGAAGVHFEDQLAAVKKCGHMGGKVLVPTQEAIQKLVAARLAADVLGV-PTLLIARTDADAADLLTSDCDP-Y 249 (435)
T ss_dssp HHHHHHHHTCSEEEEESBCGGGCBCSTTCBCEECCHHHHHHHHHHHHHHHHHHTC-CCEEEEEECTTTCCEESCCCCG-G
T ss_pred HHHHHHHcCCEEEEEecCCCCccccCCCCCCeecCHHHHHHHHHHHHHHHHhcCC-CeEEEEEcCCcccccccccccc-c
Confidence 3345578888777666643 2489999999988884 6788876543332111 11 0
Q ss_pred hhhcCCCCCCCcc---ccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhh----CCCCeEEE
Q 013861 307 EALDSNPRFGDKK---TYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDK----YPLPIAAY 379 (435)
Q Consensus 307 dA~~Sap~fgDRk---tYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~----~~lPvaaY 379 (435)
|- ..-.|.|. -|+.. ...+|||+.+..=.+ |||+|+ +.|+.+-++-|+++.+. +++.+.+|
T Consensus 250 D~---~fi~G~r~~eG~y~~~-~gld~AI~Ra~AY~~-GAD~if-------~E~~~~~~~ei~~f~~~v~~~~P~~~La~ 317 (435)
T 3lg3_A 250 DR---EFITGDRTAEGFFRTR-AGIEQAISRGLAYAP-YADLVW-------CETSTPDLALAKRFADAVHAQFPGKLLAY 317 (435)
T ss_dssp GG---GGEEEEECTTCCEEEC-CSHHHHHHHHHHHGG-GCSEEE-------ECCSSCCHHHHHHHHHHHHHHSTTCEEEE
T ss_pred cc---hhhccccccccccccc-CCHHHHHHHHHHHHc-cCCEEE-------ecCCCCCHHHHHHHHHHhccccCCeEEEe
Confidence 00 00001111 13333 358999999987666 999999 99999889888877654 56788999
Q ss_pred EechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEee
Q 013861 380 QVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIIL 419 (435)
Q Consensus 380 qVSGEYaMikaAa~~G~ide~~~v~Esl~~ikRAGAd~Ii 419 (435)
+-|-.|.=-+. ++.+ -+-....-|.++|..+++
T Consensus 318 ~~sPsfnw~~~------~~d~-~~~~f~~eLa~lG~~~v~ 350 (435)
T 3lg3_A 318 NCSPSFNWKKN------LTDQ-QIASFQDELSAMGYKYQF 350 (435)
T ss_dssp ECCSSSCHHHH------SCHH-HHHHHHHHHHHTTEEEEE
T ss_pred CCCCCcccccc------CCHH-HHHHHHHHHHHcCCcEEE
Confidence 99877643332 3322 233334567778988776
No 23
>3lye_A Oxaloacetate acetyl hydrolase; (alpha/beta)8 barrel; 1.30A {Cryphonectria parasitica} PDB: 3m0j_A* 3m0k_A
Probab=92.57 E-value=1.3 Score=43.72 Aligned_cols=155 Identities=17% Similarity=0.179 Sum_probs=103.7
Q ss_pred HHHcCCCeEEE--eecCCCCCCCcccCcCcCCCCC-----HHHHHHHHHHHCC-CeEEEeeecccCCCCCCcceeecCCC
Q 013861 166 ARDVGVNSVVL--FPKVPDALKSPTGDEAYNDNGL-----VPRTIWLLKDRYP-DLVIYTDVALDPYSSDGHDGIVREDG 237 (435)
Q Consensus 166 ~~~~GI~sv~L--Fgvi~~~~Kd~~Gs~A~~~~g~-----v~raIr~iK~~~P-dl~IitDVcLc~YTshGHcGIv~e~g 237 (435)
+.+.|++.+.+ ++. .. ....+.+.++ +...++.|.+..+ ++-|++|.=. |
T Consensus 41 ~e~aGf~ai~vsG~~~-a~------s~~G~pD~~~vt~~em~~~~~~i~r~~~~~~PviaD~d~---------------G 98 (307)
T 3lye_A 41 AMELGFKSLYMTGAGT-TA------SRLGQPDLAIAQLHDMRDNADMIANLDPFGPPLIADMDT---------------G 98 (307)
T ss_dssp HHHTTCSCEEECHHHH-HH------HHHCCCSSSCSCHHHHHHHHHHHHTSSTTSCCEEEECTT---------------C
T ss_pred HHHcCCCEEEeccHHH-HH------HhcCCCCCCCCCHHHHHHHHHhhhccCCCCCcEEEECCC---------------C
Confidence 34579999888 222 10 0012223333 2345666766666 7889999632 2
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC-------------------chHHHHHHHHHHCCCCCceeechhhhhc
Q 013861 238 VIMNDETVHQLCKQAVSQARAGADVVSPSDMMD-------------------GRVGAIRAALDAEGFQHVSIMSYTAKYA 298 (435)
Q Consensus 238 ~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMMD-------------------GrVgAIR~aLD~~Gf~~v~IMSYSaKyA 298 (435)
+= |.+ ...+.+-.+.++||+.|--.|-.- .||.|.|++-++.| .+.-|++-+--|+
T Consensus 99 yg-~~~---~v~~~v~~l~~aGaagv~iEDq~~~k~cgh~~gk~l~~~~e~~~rI~Aa~~A~~~~~-~d~~I~ARTDa~~ 173 (307)
T 3lye_A 99 YG-GPI---MVARTVEHYIRSGVAGAHLEDQILTKRCGHLSGKKVVSRDEYLVRIRAAVATKRRLR-SDFVLIARTDALQ 173 (307)
T ss_dssp SS-SHH---HHHHHHHHHHHTTCCEEEECCBCCCC--------CBCCHHHHHHHHHHHHHHHHHTT-CCCEEEEEECCHH
T ss_pred CC-CHH---HHHHHHHHHHHcCCeEEEEcCCCCCcccCCCCCCeecCHHHHHHHHHHHHHHHHhcC-CCeEEEEechhhh
Confidence 21 222 233445556789999887777531 57888888887777 5788888765443
Q ss_pred ccccccchhhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhCC-CCeE
Q 013861 299 SSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYP-LPIA 377 (435)
Q Consensus 299 SafYGPFRdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~~-lPva 377 (435)
. ...+|||+.+..=.+-|||+|+ + |++.-.|-|+++.+.++ +|+.
T Consensus 174 ~--------------------------~gldeAi~Ra~ay~eAGAD~if-------i-~~~~~~~~~~~i~~~~~~~Pv~ 219 (307)
T 3lye_A 174 S--------------------------LGYEECIERLRAARDEGADVGL-------L-EGFRSKEQAAAAVAALAPWPLL 219 (307)
T ss_dssp H--------------------------HCHHHHHHHHHHHHHTTCSEEE-------E-CCCSCHHHHHHHHHHHTTSCBE
T ss_pred c--------------------------cCHHHHHHHHHHHHHCCCCEEE-------e-cCCCCHHHHHHHHHHccCCcee
Confidence 2 0378999999999999999999 7 58888999999999885 9996
Q ss_pred EEEe
Q 013861 378 AYQV 381 (435)
Q Consensus 378 aYqV 381 (435)
+=.+
T Consensus 220 ~n~~ 223 (307)
T 3lye_A 220 LNSV 223 (307)
T ss_dssp EEEE
T ss_pred EEee
Confidence 5444
No 24
>1zlp_A PSR132, petal death protein; TIM-barrel, helix swapping,2-ethyl-3-methylmalate lyase, 2-P methylmalate lyase, lyase/PEP mutase superfamily; 2.70A {Dianthus caryophyllus}
Probab=92.10 E-value=1.5 Score=43.36 Aligned_cols=166 Identities=20% Similarity=0.162 Sum_probs=103.8
Q ss_pred CCCceeechhhhHHHHHHHHHHcCCCeEEEeec-CCCCCCCcccCcCcCCCCC-----HHHHHHHHHHHCCCeEEEeeec
Q 013861 147 MPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPK-VPDALKSPTGDEAYNDNGL-----VPRTIWLLKDRYPDLVIYTDVA 220 (435)
Q Consensus 147 MPGv~r~s~~~~l~~~v~~~~~~GI~sv~LFgv-i~~~~Kd~~Gs~A~~~~g~-----v~raIr~iK~~~Pdl~IitDVc 220 (435)
|||+|=... ..-+.+.|++.+.+=+- +.. .+..+.+-++ +...++.|.+..|++-|++|.=
T Consensus 43 ~~~ayD~~s-------A~i~e~aGfdai~vs~~~~a~------~~lG~pD~~~vt~~em~~~~~~I~r~~~~~PviaD~d 109 (318)
T 1zlp_A 43 MPGVQDALS-------AAVVEKTGFHAAFVSGYSVSA------AMLGLPDFGLLTTTEVVEATRRITAAAPNLCVVVDGD 109 (318)
T ss_dssp EEEECSHHH-------HHHHHHTTCSEEEECHHHHHH------HHHCCCSSSCSCHHHHHHHHHHHHHHSSSSEEEEECT
T ss_pred EecCCCHHH-------HHHHHHcCCCEEEECcHHHhh------HhcCCCCCCCCCHHHHHHHHHHHHhhccCCCEEEeCC
Confidence 677754332 12233579999887431 110 0112222233 3467788888899999999973
Q ss_pred ccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCC-------------------CchHHHHHHHHH
Q 013861 221 LDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMM-------------------DGRVGAIRAALD 281 (435)
Q Consensus 221 Lc~YTshGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMM-------------------DGrVgAIR~aLD 281 (435)
. |+= |-+. ..+.+..+.++||+.|--.|=. =.||.++|++.+
T Consensus 110 ~---------------Gyg-~~~~---v~~tv~~l~~aGaagv~iED~~~~k~cgH~~gk~L~p~~e~~~rI~Aa~~A~~ 170 (318)
T 1zlp_A 110 T---------------GGG-GPLN---VQRFIRELISAGAKGVFLEDQVWPKKCGHMRGKAVVPAEEHALKIAAAREAIG 170 (318)
T ss_dssp T---------------CSS-SHHH---HHHHHHHHHHTTCCEEEEECBCSSCCCSSSSCCCBCCHHHHHHHHHHHHHHHT
T ss_pred C---------------CCC-CHHH---HHHHHHHHHHcCCcEEEECCCCCCccccCCCCCccCCHHHHHHHHHHHHHhcc
Confidence 2 321 2222 3344455567999988766642 135666666655
Q ss_pred HCCCCCceeechhhhhcccccccchhhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCch
Q 013861 282 AEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPY 361 (435)
Q Consensus 282 ~~Gf~~v~IMSYSaKyASafYGPFRdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~Y 361 (435)
. .+.-|+.-+--++. ...+|+|+.+..=.+-|||+|+ + ++.+-
T Consensus 171 ~---~~~~I~ARtda~a~--------------------------~gl~~ai~Ra~Ay~eAGAd~i~-------~-e~~~~ 213 (318)
T 1zlp_A 171 D---SDFFLVARTDARAP--------------------------HGLEEGIRRANLYKEAGADATF-------V-EAPAN 213 (318)
T ss_dssp T---SCCEEEEEECTHHH--------------------------HHHHHHHHHHHHHHHTTCSEEE-------E-CCCCS
T ss_pred c---CCcEEEEeeHHhhh--------------------------cCHHHHHHHHHHHHHcCCCEEE-------E-cCCCC
Confidence 3 34455554433321 1257889998888889999999 6 47788
Q ss_pred HHHHHHHHhhCCCCeEEEEe
Q 013861 362 LDVIRLLRDKYPLPIAAYQV 381 (435)
Q Consensus 362 LDIIr~vk~~~~lPvaaYqV 381 (435)
.|.++++.+..++|+.+.-+
T Consensus 214 ~e~~~~i~~~l~~P~lan~~ 233 (318)
T 1zlp_A 214 VDELKEVSAKTKGLRIANMI 233 (318)
T ss_dssp HHHHHHHHHHSCSEEEEEEC
T ss_pred HHHHHHHHHhcCCCEEEEec
Confidence 99999999999999988444
No 25
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0
Probab=91.97 E-value=0.6 Score=43.47 Aligned_cols=167 Identities=17% Similarity=0.156 Sum_probs=97.5
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCC
Q 013861 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDG 237 (435)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTshGHcGIv~e~g 237 (435)
...+..+...+.|...+.. + + ...|+.||+.. ++=|+.... ..|. ||..++
T Consensus 37 ~~~~~A~a~~~~Ga~~i~~-~------------------~--~~~i~~ir~~v-~~Pvig~~k-~d~~--~~~~~I---- 87 (232)
T 3igs_A 37 IVAAMALAAEQAGAVAVRI-E------------------G--IDNLRMTRSLV-SVPIIGIIK-RDLD--ESPVRI---- 87 (232)
T ss_dssp HHHHHHHHHHHTTCSEEEE-E------------------S--HHHHHHHHTTC-CSCEEEECB-CCCS--SCCCCB----
T ss_pred hHHHHHHHHHHCCCeEEEE-C------------------C--HHHHHHHHHhc-CCCEEEEEe-ecCC--CcceEe----
Confidence 4677777788889987664 1 1 45789999876 444554322 2221 222223
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCeecCCCCC---CchHHHHHHHHHHCCCCCceeechhhhhcccccccchhhhcCCCC
Q 013861 238 VIMNDETVHQLCKQAVSQARAGADVVSPSDMM---DGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPR 314 (435)
Q Consensus 238 ~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMM---DGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRdA~~Sap~ 314 (435)
++|+++ +....++|||+|...... +..+..+-+.+.+.| +.+|.
T Consensus 88 ----~~~~~~----i~~~~~~Gad~V~l~~~~~~~p~~l~~~i~~~~~~g---~~v~~---------------------- 134 (232)
T 3igs_A 88 ----TPFLDD----VDALAQAGAAIIAVDGTARQRPVAVEALLARIHHHH---LLTMA---------------------- 134 (232)
T ss_dssp ----SCSHHH----HHHHHHHTCSEEEEECCSSCCSSCHHHHHHHHHHTT---CEEEE----------------------
T ss_pred ----CccHHH----HHHHHHcCCCEEEECccccCCHHHHHHHHHHHHHCC---CEEEE----------------------
Confidence 224433 333468999999743221 234444444444444 44442
Q ss_pred CCCccccCCCCCCHHHHHHHHHhcccccccEEecccCC--CcccCCCchHHHHHHHHhhCCCCeEEEEechHHHHHHHHH
Q 013861 315 FGDKKTYQMNPANYREALVEAQADESEGADILLFSVLG--SQVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGG 392 (435)
Q Consensus 315 fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~--~~VKPal~YLDIIr~vk~~~~lPvaaYqVSGEYaMikaAa 392 (435)
+..+.+|+.+. ++.|||+|.+...| ..-|+..+-++.++++++. ++||.|
T Consensus 135 ---------~v~t~eea~~a----~~~Gad~Ig~~~~g~t~~~~~~~~~~~~i~~l~~~-~ipvIA-------------- 186 (232)
T 3igs_A 135 ---------DCSSVDDGLAC----QRLGADIIGTTMSGYTTPDTPEEPDLPLVKALHDA-GCRVIA-------------- 186 (232)
T ss_dssp ---------ECCSHHHHHHH----HHTTCSEEECTTTTSSSSSCCSSCCHHHHHHHHHT-TCCEEE--------------
T ss_pred ---------eCCCHHHHHHH----HhCCCCEEEEcCccCCCCCCCCCCCHHHHHHHHhc-CCcEEE--------------
Confidence 23356666543 35799999643333 1224556789999999998 999986
Q ss_pred HCCCCchhhHHHHHHHHHHHhcccEee
Q 013861 393 ALKMIDEQRVMMESLMCLRRAGADIIL 419 (435)
Q Consensus 393 ~~G~ide~~~v~Esl~~ikRAGAd~Ii 419 (435)
.|-+.. .|-+..++.+|||.++
T Consensus 187 -~GGI~t----~~d~~~~~~~GadgV~ 208 (232)
T 3igs_A 187 -EGRYNS----PALAAEAIRYGAWAVT 208 (232)
T ss_dssp -ESCCCS----HHHHHHHHHTTCSEEE
T ss_pred -ECCCCC----HHHHHHHHHcCCCEEE
Confidence 344432 2334456678999876
No 26
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}
Probab=91.93 E-value=0.57 Score=43.57 Aligned_cols=168 Identities=14% Similarity=0.161 Sum_probs=98.8
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCC
Q 013861 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDG 237 (435)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTshGHcGIv~e~g 237 (435)
...+..+.+.+.|...+.. + + ...|+.||+.. ++=|+.... .-|. ||..++
T Consensus 37 ~~~~~A~a~~~~Ga~~i~~-~------------------~--~~~i~~ir~~v-~~Pvig~~k-~~~~--~~~~~I---- 87 (229)
T 3q58_A 37 IVAAMAQAAASAGAVAVRI-E------------------G--IENLRTVRPHL-SVPIIGIIK-RDLT--GSPVRI---- 87 (229)
T ss_dssp HHHHHHHHHHHTTCSEEEE-E------------------S--HHHHHHHGGGC-CSCEEEECB-CCCS--SCCCCB----
T ss_pred hHHHHHHHHHHCCCcEEEE-C------------------C--HHHHHHHHHhc-CCCEEEEEe-ecCC--CCceEe----
Confidence 4677777788889988765 1 1 45789999886 555554422 1221 122222
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCeecCCCCC---CchHHHHHHHHHHCCCCCceeechhhhhcccccccchhhhcCCCC
Q 013861 238 VIMNDETVHQLCKQAVSQARAGADVVSPSDMM---DGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPR 314 (435)
Q Consensus 238 ~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMM---DGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRdA~~Sap~ 314 (435)
++|+++ +....++|||+|....-. +..+..+-+.+.+.| +.+|.
T Consensus 88 ----~~~~~~----i~~~~~aGad~I~l~~~~~~~p~~l~~~i~~~~~~g---~~v~~---------------------- 134 (229)
T 3q58_A 88 ----TPYLQD----VDALAQAGADIIAFDASFRSRPVDIDSLLTRIRLHG---LLAMA---------------------- 134 (229)
T ss_dssp ----SCSHHH----HHHHHHHTCSEEEEECCSSCCSSCHHHHHHHHHHTT---CEEEE----------------------
T ss_pred ----CccHHH----HHHHHHcCCCEEEECccccCChHHHHHHHHHHHHCC---CEEEE----------------------
Confidence 224433 334578999999742221 134444444444443 44552
Q ss_pred CCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCC--cccCCCchHHHHHHHHhhCCCCeEEEEechHHHHHHHHH
Q 013861 315 FGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGS--QVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGG 392 (435)
Q Consensus 315 fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~--~VKPal~YLDIIr~vk~~~~lPvaaYqVSGEYaMikaAa 392 (435)
+..+.+||.+.. +.|||+|.....|. .-++..+-++.++++++. ++||.|
T Consensus 135 ---------~v~t~eea~~a~----~~Gad~Ig~~~~g~t~~~~~~~~~~~li~~l~~~-~ipvIA-------------- 186 (229)
T 3q58_A 135 ---------DCSTVNEGISCH----QKGIEFIGTTLSGYTGPITPVEPDLAMVTQLSHA-GCRVIA-------------- 186 (229)
T ss_dssp ---------ECSSHHHHHHHH----HTTCSEEECTTTTSSSSCCCSSCCHHHHHHHHTT-TCCEEE--------------
T ss_pred ---------ecCCHHHHHHHH----hCCCCEEEecCccCCCCCcCCCCCHHHHHHHHHc-CCCEEE--------------
Confidence 234677765543 56999996433331 114556778999999998 999986
Q ss_pred HCCCCchhhHHHHHHHHHHHhcccEeeh
Q 013861 393 ALKMIDEQRVMMESLMCLRRAGADIILT 420 (435)
Q Consensus 393 ~~G~ide~~~v~Esl~~ikRAGAd~IiT 420 (435)
.|-+.. .|-+..++.+|||.++-
T Consensus 187 -~GGI~t----~~d~~~~~~~GadgV~V 209 (229)
T 3q58_A 187 -EGRYNT----PALAANAIEHGAWAVTV 209 (229)
T ss_dssp -ESSCCS----HHHHHHHHHTTCSEEEE
T ss_pred -ECCCCC----HHHHHHHHHcCCCEEEE
Confidence 344432 23344556789998763
No 27
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=91.72 E-value=2.2 Score=38.59 Aligned_cols=114 Identities=16% Similarity=0.201 Sum_probs=69.1
Q ss_pred HHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCCCceeechhhhhcccccccchhhhcCCCCCCCccccCCCCCCHHHH
Q 013861 252 AVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREA 331 (435)
Q Consensus 252 Avs~A~AGADiVAPSDMMDGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRdA~~Sap~fgDRktYQmdp~N~~EA 331 (435)
+-...++|||.|.-.++-......+.+.+.+.|..-+..+ +|.+..|.
T Consensus 101 ~~~~~~~Gad~v~~~~~~~~~~~~~~~~~~~~g~~~~~~i--------------------------------~~~t~~e~ 148 (248)
T 1geq_A 101 LAEAKASGVDGILVVDLPVFHAKEFTEIAREEGIKTVFLA--------------------------------APNTPDER 148 (248)
T ss_dssp HHHHHHHTCCEEEETTCCGGGHHHHHHHHHHHTCEEEEEE--------------------------------CTTCCHHH
T ss_pred HHHHHHCCCCEEEECCCChhhHHHHHHHHHHhCCCeEEEE--------------------------------CCCCHHHH
Confidence 3345678999988777776777777778888775322211 45566777
Q ss_pred HHHHHhccccccc-EEe-cccCCC-cccCCC-c-hHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhhHHHHH
Q 013861 332 LVEAQADESEGAD-ILL-FSVLGS-QVKPGL-P-YLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMES 406 (435)
Q Consensus 332 lre~~~D~~EGAD-ilM-~~~~~~-~VKPal-~-YLDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G~ide~~~v~Es 406 (435)
+++.. +++| ++. .++-|. .-|.+. + -++.|+++++.+++||.+ -|-+... |.
T Consensus 149 ~~~~~----~~~d~~i~~~~~~G~~g~~~~~~~~~~~~i~~l~~~~~~pi~~---------------~GGI~~~----e~ 205 (248)
T 1geq_A 149 LKVID----DMTTGFVYLVSLYGTTGAREEIPKTAYDLLRRAKRICRNKVAV---------------GFGVSKR----EH 205 (248)
T ss_dssp HHHHH----HHCSSEEEEECCC-------CCCHHHHHHHHHHHHHCSSCEEE---------------ESCCCSH----HH
T ss_pred HHHHH----hcCCCeEEEEECCccCCCCCCCChhHHHHHHHHHhhcCCCEEE---------------EeecCCH----HH
Confidence 66554 3466 542 233321 111111 3 378999999998999864 3455552 34
Q ss_pred HHHHHHhcccEeeh
Q 013861 407 LMCLRRAGADIILT 420 (435)
Q Consensus 407 l~~ikRAGAd~IiT 420 (435)
+..++.+|||.++.
T Consensus 206 i~~~~~~Gad~viv 219 (248)
T 1geq_A 206 VVSLLKEGANGVVV 219 (248)
T ss_dssp HHHHHHTTCSEEEE
T ss_pred HHHHHHcCCCEEEE
Confidence 44566789997653
No 28
>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A
Probab=91.54 E-value=0.27 Score=44.52 Aligned_cols=58 Identities=19% Similarity=0.152 Sum_probs=37.2
Q ss_pred CCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhCCCCeEE
Q 013861 316 GDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAA 378 (435)
Q Consensus 316 gDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~~lPvaa 378 (435)
||+.+|+..- +..|..++.+ +.|||.|-+..+...-.+...+ ++|+++++.+++|+-+
T Consensus 23 g~~~~~~~~~-d~~~~a~~~~---~~Gad~i~v~~~d~~~~~~~~~-~~i~~i~~~~~ipv~v 80 (244)
T 1vzw_A 23 GESGTETSYG-SPLEAALAWQ---RSGAEWLHLVDLDAAFGTGDNR-ALIAEVAQAMDIKVEL 80 (244)
T ss_dssp -----CCBCC-CHHHHHHHHH---HTTCSEEEEEEHHHHHTSCCCH-HHHHHHHHHCSSEEEE
T ss_pred cccccceecC-CHHHHHHHHH---HcCCCEEEEecCchhhcCCChH-HHHHHHHHhcCCcEEE
Confidence 6777787543 6666555543 4899999744332222466778 9999999999999876
No 29
>3fa4_A 2,3-dimethylmalate lyase; alpha/beta barrel, helix swapping; 2.18A {Aspergillus niger} PDB: 3fa3_A
Probab=91.38 E-value=1.7 Score=42.67 Aligned_cols=189 Identities=16% Similarity=0.246 Sum_probs=117.0
Q ss_pred HHHcCCCeEEEe--ecCCCCCCCcccCcCcCCCCCH-----HHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCc
Q 013861 166 ARDVGVNSVVLF--PKVPDALKSPTGDEAYNDNGLV-----PRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGV 238 (435)
Q Consensus 166 ~~~~GI~sv~LF--gvi~~~~Kd~~Gs~A~~~~g~v-----~raIr~iK~~~Pdl~IitDVcLc~YTshGHcGIv~e~g~ 238 (435)
+.+.|++.+.+= +. .. ....+.+.+++ ..-++.|.+..+++-|++|.=. |+
T Consensus 34 ~e~aGf~ai~vsG~~~-a~------~~~G~pD~~~vt~~em~~~~~~I~~~~~~~PviaD~d~---------------Gy 91 (302)
T 3fa4_A 34 ALSAGFDALYMTGAGT-AA------SVHGQADLGICTLNDMRANAEMISNISPSTPVIADADT---------------GY 91 (302)
T ss_dssp HHTTTCSCEEECHHHH-HH------HHHSCCSSSCCCHHHHHHHHHHHHTTSTTSCEEEECTT---------------TT
T ss_pred HHHcCCCEEEeCcHHH-HH------HHcCCCCCCcCCHHHHHHHHHHHHhhccCCCEEEECCC---------------CC
Confidence 345799998872 22 00 01123333332 2455667666678889999632 22
Q ss_pred cccHHHHHHHHHHHHHHHHcCCCeecCCCCC--------C-----------chHHHHHHHHHHCCCCCceeechhhhhcc
Q 013861 239 IMNDETVHQLCKQAVSQARAGADVVSPSDMM--------D-----------GRVGAIRAALDAEGFQHVSIMSYTAKYAS 299 (435)
Q Consensus 239 IdND~Tv~~Lak~Avs~A~AGADiVAPSDMM--------D-----------GrVgAIR~aLD~~Gf~~v~IMSYSaKyAS 299 (435)
- |.+ ...+.+-.+.++||+.|--.|-. + +||.|.|++-++.| .++-|++-+--|+.
T Consensus 92 g-~~~---~v~~tv~~l~~aGaagv~iEDq~~~Krcgh~~gk~l~~~~e~~~rI~Aa~~A~~~~~-~d~~I~ARTDa~~~ 166 (302)
T 3fa4_A 92 G-GPI---MVARTTEQYSRSGVAAFHIEDQVQTKRCGHLAGKILVDTDTYVTRIRAAVQARQRIG-SDIVVIARTDSLQT 166 (302)
T ss_dssp S-SHH---HHHHHHHHHHHTTCCEEEECSBCCC-------CCCBCCHHHHHHHHHHHHHHHHHHT-CCCEEEEEECCHHH
T ss_pred C-CHH---HHHHHHHHHHHcCCcEEEECCCCCCcccCCCCCCeecCHHHHHHHHHHHHHHHHhcC-CCEEEEEEeccccc
Confidence 1 222 23444555678999988777753 1 47777777777666 58889887654431
Q ss_pred cccccchhhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhC-CCCeEE
Q 013861 300 SFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKY-PLPIAA 378 (435)
Q Consensus 300 afYGPFRdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~-~lPvaa 378 (435)
...+|||+.+..=.+-|||+|+ | |++.-.|-|+++.+.+ ++|+-+
T Consensus 167 --------------------------~gldeAi~Ra~ay~eAGAD~if-------i-~g~~~~~ei~~~~~~~~~~Pl~~ 212 (302)
T 3fa4_A 167 --------------------------HGYEESVARLRAARDAGADVGF-------L-EGITSREMARQVIQDLAGWPLLL 212 (302)
T ss_dssp --------------------------HCHHHHHHHHHHHHTTTCSEEE-------E-TTCCCHHHHHHHHHHTTTSCEEE
T ss_pred --------------------------CCHHHHHHHHHHHHHcCCCEEe-------e-cCCCCHHHHHHHHHHhcCCceeE
Confidence 1378999999999999999999 6 6778899999999988 489865
Q ss_pred EEec-hHHH--HHHHHHHCCCC----------chhhHHHHHHHHHHHhcc
Q 013861 379 YQVS-GEYS--MIKAGGALKMI----------DEQRVMMESLMCLRRAGA 415 (435)
Q Consensus 379 YqVS-GEYa--MikaAa~~G~i----------de~~~v~Esl~~ikRAGA 415 (435)
=.+. |.+- -.+.-++.|+= ---..+.+.+..|++.|-
T Consensus 213 n~~~~g~~p~~~~~eL~~lGv~~v~~~~~~~raa~~A~~~~~~~i~~~g~ 262 (302)
T 3fa4_A 213 NMVEHGATPSISAAEAKEMGFRIIIFPFAALGPAVAAMREAMEKLKRDGI 262 (302)
T ss_dssp ECCTTSSSCCCCHHHHHHHTCSEEEETTTTHHHHHHHHHHHHHHHHHHSS
T ss_pred EEecCCCCCCCCHHHHHHcCCCEEEEchHHHHHHHHHHHHHHHHHHHcCC
Confidence 3332 3321 12333334430 012456666777776664
No 30
>1f8m_A Isocitrate lyase, ICL; alpha-beta barrel, helix-swapping, closed conformation, bromopyuvate modification, structural genomics; 1.80A {Mycobacterium tuberculosis H37RV} SCOP: c.1.12.7 PDB: 1f61_A 1f8i_A
Probab=91.32 E-value=0.87 Score=46.98 Aligned_cols=122 Identities=19% Similarity=0.273 Sum_probs=81.0
Q ss_pred HHHHHHHHcCCCeecCCCCC--------------------CchHHHHHHHHHHCCCCCceeechhhhhcccccc------
Q 013861 250 KQAVSQARAGADVVSPSDMM--------------------DGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYG------ 303 (435)
Q Consensus 250 k~Avs~A~AGADiVAPSDMM--------------------DGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYG------ 303 (435)
+..-.+.+|||--|--.|-. =.||.|+|.+.|..|- ++-|++-+--++..+-.
T Consensus 167 ~tvk~~i~AGaaGi~IEDq~~~~KkCGH~~gk~lvp~~e~v~rI~AAr~A~~~~g~-d~vIiARTDa~~a~li~s~~d~~ 245 (429)
T 1f8m_A 167 ELQKALIAAGVAGSHWEDQLASEKKCGHLGGKVLIPTQQHIRTLTSARLAADVADV-PTVVIARTDAEAATLITSDVDER 245 (429)
T ss_dssp HHHHHHHHTTCSEEEEECBCGGGCCCTTSSCCEECCHHHHHHHHHHHHHHHHHTTC-CCEEEEEECTTTCCEESCCCSTT
T ss_pred HHHHHHHHcCCEEEEEecCCCccccccCCCCCeeeCHHHHHHHHHHHHHHHHhcCC-CEEEEEEechhhhcccccccccc
Confidence 33445677888665544443 2589999999998884 78899876555432211
Q ss_pred --cchhhhcCCCCCCCcc-ccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhCC--CC--e
Q 013861 304 --PFREALDSNPRFGDKK-TYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYP--LP--I 376 (435)
Q Consensus 304 --PFRdA~~Sap~fgDRk-tYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~~--lP--v 376 (435)
||-.... ++. -|+.. ...+|||+.+..=.+ |||+|+ +.++++-+|-|+++.+..+ .| +
T Consensus 246 d~~fl~g~~------~~eg~y~~~-~gld~AI~Ra~AYa~-gAD~if-------~e~~~~~~eei~~f~~~v~~~~P~~~ 310 (429)
T 1f8m_A 246 DQPFITGER------TREGFYRTK-NGIEPCIARAKAYAP-FADLIW-------METGTPDLEAARQFSEAVKAEYPDQM 310 (429)
T ss_dssp TGGGEEEEE------CTTSCEEEC-CSHHHHHHHHHHHGG-GCSEEE-------ECCSSCCHHHHHHHHHHHHTTCTTCE
T ss_pred ccccccCCC------Ccccccccc-cCHHHHHHHHHHHHh-cCCEEE-------eCCCCCCHHHHHHHHHHhcccCCCce
Confidence 1211111 111 23322 358999999877655 999999 9888899999998887664 36 6
Q ss_pred EEEEechHHHH
Q 013861 377 AAYQVSGEYSM 387 (435)
Q Consensus 377 aaYqVSGEYaM 387 (435)
.+|+-|.-|.-
T Consensus 311 La~n~sPsf~w 321 (429)
T 1f8m_A 311 LAYNCSPSFNW 321 (429)
T ss_dssp EEEECCTTSCH
T ss_pred eecCCCCCCCc
Confidence 88998876663
No 31
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=91.26 E-value=8.4 Score=35.05 Aligned_cols=178 Identities=24% Similarity=0.234 Sum_probs=91.2
Q ss_pred CCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCC
Q 013861 148 PGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSD 227 (435)
Q Consensus 148 PGv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTsh 227 (435)
-|.+..+. +.++.++.+.+.|+..+.+-.. ..+.. ..|.....++.|++.+ ++-|+.
T Consensus 23 ~g~~~~~~--~~~~~a~~~~~~Ga~~i~v~d~----~~~~~------~~g~~~~~i~~i~~~~-~iPvi~---------- 79 (266)
T 2w6r_A 23 SGKKNTGI--LLRDWVVEVEKRGAGEILLTSI----DRDGT------KSGYDTEMIRFVRPLT-TLPIIA---------- 79 (266)
T ss_dssp TTTEEEEE--EHHHHHHHHHHHTCSEEEEEET----TTSSC------SSCCCHHHHHHHGGGC-CSCEEE----------
T ss_pred CCeeccCC--CHHHHHHHHHHCCCCEEEEEec----CcccC------CCcccHHHHHHHHHhc-CCCEEE----------
Confidence 34444543 3788899999999999998432 12211 2334567788888765 333332
Q ss_pred CcceeecCCCccccHHHHHHHHHHHHHHHHcCCCee-cCCCCCCc--hHHHHHHHHHHCC--CCCceeechhhhhccccc
Q 013861 228 GHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVV-SPSDMMDG--RVGAIRAALDAEG--FQHVSIMSYTAKYASSFY 302 (435)
Q Consensus 228 GHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiV-APSDMMDG--rVgAIR~aLD~~G--f~~v~IMSYSaKyASafY 302 (435)
.|.|.+-+.++ .+ .++|||.| .++..+++ ....+++.++..| ... .+++-+.|.. =
T Consensus 80 --------~ggi~~~~~i~----~~---~~~Gad~v~lg~~~~~~~~~~~~~~~~~~~~g~~~~~-i~~~~d~~~~---~ 140 (266)
T 2w6r_A 80 --------SGGAGKMEHFL----EA---FLAGADKALAASVFHFREIDMRELKEYLKKHGGSGQA-VVVAIDAKRV---D 140 (266)
T ss_dssp --------ESCCCSTHHHH----HH---HHHTCSEEECCCCC------CHHHHHHCC----CCCE-EEEEEEEEEE---T
T ss_pred --------ECCCCCHHHHH----HH---HHcCCcHhhhhHHHHhCCCCHHHHHHHHHHcCCCCCE-EEEEEEEEec---C
Confidence 12222222222 22 24799965 45666656 6778888887666 322 2344444311 0
Q ss_pred ccchhhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhCCCCeEE
Q 013861 303 GPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAA 378 (435)
Q Consensus 303 GPFRdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~~lPvaa 378 (435)
|-++=... . +++.+ ..+..|.+++++ +-|++.|.+......-....+-++.++++++..++||.+
T Consensus 141 g~~~v~~~---g-~~~~~----~~~~~e~~~~~~---~~G~~~i~~t~~~~~g~~~g~~~~~i~~l~~~~~ipvia 205 (266)
T 2w6r_A 141 GEFMVFTH---S-GKKNT----GILLRDWVVEVE---KRGAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIA 205 (266)
T ss_dssp TEEEEEET---T-TTEEE----EEEHHHHHHHHH---HTTCSEEEEEETTTTTTCSCCCHHHHHHHGGGCCSCEEE
T ss_pred CCEEEEEC---C-Cceec----chhHHHHHHHHH---HcCCCEEEEEeecCCCCcCCCCHHHHHHHHHHcCCCEEE
Confidence 00000000 0 11111 114455555554 479999985432211122224599999999999999986
No 32
>2qiw_A PEP phosphonomutase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: P6G; 1.80A {Corynebacterium glutamicum atcc 13032}
Probab=91.19 E-value=1.3 Score=42.30 Aligned_cols=167 Identities=19% Similarity=0.210 Sum_probs=108.6
Q ss_pred CCCCceeechhhhHHHHHHHHHHcCCCeEEEeec-CCCCCCCcccCcCcCCCCCH-----HHHHHHHHHHCCCeEEEeee
Q 013861 146 AMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPK-VPDALKSPTGDEAYNDNGLV-----PRTIWLLKDRYPDLVIYTDV 219 (435)
Q Consensus 146 sMPGv~r~s~~~~l~~~v~~~~~~GI~sv~LFgv-i~~~~Kd~~Gs~A~~~~g~v-----~raIr~iK~~~Pdl~IitDV 219 (435)
.|||+|=...- .+ +-+.|++.+++=+- +. .+..+.+-+++ ...++.|.+..+ +-|++|.
T Consensus 23 ~~~~ayD~~sA-~~------~~~aG~dai~vg~~s~a-------~~~G~pD~~~vt~~em~~~~~~I~r~~~-~pviaD~ 87 (255)
T 2qiw_A 23 VLPTVWDTWSA-GL------VEEAGFSGLTIGSHPVA-------DATGSSDGENMNFADYMAVVKKITSAVS-IPVSVDV 87 (255)
T ss_dssp ECCEESSHHHH-HH------HHHTTCSCEEECHHHHH-------HHTTCCTTTCSCHHHHHHHHHHHHHHCS-SCEEEEC
T ss_pred EEecCcCHHHH-HH------HHHcCCCEEEEChHHHH-------HhCCCCCCCCcCHHHHHHHHHHHHhcCC-CCEEecc
Confidence 38898655432 23 23479999877321 11 01223332333 345666766665 7899997
Q ss_pred cccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCC-------------CCchHHHHHHHHHHCCCC
Q 013861 220 ALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDM-------------MDGRVGAIRAALDAEGFQ 286 (435)
Q Consensus 220 cLc~YTshGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDM-------------MDGrVgAIR~aLD~~Gf~ 286 (435)
=.- | -|.. .+.+..+.++||+.|--.|= |=.+|.+++++.++.|.
T Consensus 88 ~~G-y---------------g~~~-----~~~~~~l~~aGa~gv~iEd~~~~~~k~l~~~~e~~~~I~a~~~a~~~~g~- 145 (255)
T 2qiw_A 88 ESG-Y---------------GLSP-----ADLIAQILEAGAVGINVEDVVHSEGKRVREAQEHADYIAAARQAADVAGV- 145 (255)
T ss_dssp TTC-T---------------TCCH-----HHHHHHHHHTTCCEEEECSEEGGGTTEECCHHHHHHHHHHHHHHHHHHTC-
T ss_pred CCC-c---------------CcHH-----HHHHHHHHHcCCcEEEECCCCCCCCCcccCHHHHHHHHHHHHHHHHhcCC-
Confidence 443 3 1111 44555566799999988775 44678888888777674
Q ss_pred CceeechhhhhcccccccchhhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHH
Q 013861 287 HVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIR 366 (435)
Q Consensus 287 ~v~IMSYSaKyASafYGPFRdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr 366 (435)
++-|+..+--+ ..+ .+| +....+|+|+.+..=.+-|||+|+ + |+.+-.|.++
T Consensus 146 ~~~v~aRtd~~----------~~g----~~~------~~~~~~~ai~ra~a~~eAGAd~i~-------~-e~~~~~~~~~ 197 (255)
T 2qiw_A 146 DVVINGRTDAV----------KLG----ADV------FEDPMVEAIKRIKLMEQAGARSVY-------P-VGLSTAEQVE 197 (255)
T ss_dssp CCEEEEEECHH----------HHC----TTT------SSSHHHHHHHHHHHHHHHTCSEEE-------E-CCCCSHHHHH
T ss_pred CeEEEEEechh----------hcc----CCc------chHHHHHHHHHHHHHHHcCCcEEE-------E-cCCCCHHHHH
Confidence 56788776543 111 011 012368899999888889999999 7 7888899999
Q ss_pred HHHhhCCCCeE
Q 013861 367 LLRDKYPLPIA 377 (435)
Q Consensus 367 ~vk~~~~lPva 377 (435)
++.+..++|+-
T Consensus 198 ~i~~~~~~P~n 208 (255)
T 2qiw_A 198 RLVDAVSVPVN 208 (255)
T ss_dssp HHHTTCSSCBE
T ss_pred HHHHhCCCCEE
Confidence 99999999994
No 33
>1o66_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics; HET: MSE; 1.75A {Neisseria meningitidis serogroup B} SCOP: c.1.12.8 PDB: 1o68_A*
Probab=91.04 E-value=2.2 Score=41.61 Aligned_cols=165 Identities=17% Similarity=0.171 Sum_probs=106.3
Q ss_pred CC-CceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCC
Q 013861 147 MP-GCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYS 225 (435)
Q Consensus 147 MP-Gv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YT 225 (435)
|| |=|..+.. ..++-+.++.+.|...|-|=|- .-+...|+.+.++- +=|+..+-|-|=+
T Consensus 85 ~pfgsy~~s~~-~a~~na~rl~kaGa~aVklEdg-----------------~e~~~~I~al~~ag--IpV~gHiGLtPQs 144 (275)
T 1o66_A 85 LPFGAYQQSKE-QAFAAAAELMAAGAHMVKLEGG-----------------VWMAETTEFLQMRG--IPVCAHIGLTPQS 144 (275)
T ss_dssp CCTTSSSSCHH-HHHHHHHHHHHTTCSEEEEECS-----------------GGGHHHHHHHHHTT--CCEEEEEESCGGG
T ss_pred CCCCCccCCHH-HHHHHHHHHHHcCCcEEEECCc-----------------HHHHHHHHHHHHcC--CCeEeeeccCcee
Confidence 67 46666765 5888889999999999988331 14567888888764 2355666666655
Q ss_pred CCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCCCceeechhh-hhccccccc
Q 013861 226 SDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTA-KYASSFYGP 304 (435)
Q Consensus 226 shGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMMDGrVgAIR~aLD~~Gf~~v~IMSYSa-KyASafYGP 304 (435)
.+--.|..- -|+- +..+.+.+.|..+.+||||+|=+..+-.--..+|.++| +++++..-+ .+++.=+=-
T Consensus 145 ~~~~ggf~v-~grt---~~a~~~i~rA~a~~eAGA~~ivlE~vp~~~a~~it~~l------~iP~igIGaG~~~dgQvLV 214 (275)
T 1o66_A 145 VFAFGGYKV-QGRG---GKAQALLNDAKAHDDAGAAVVLMECVLAELAKKVTETV------SCPTIGIGAGADCDGQVLV 214 (275)
T ss_dssp TTC---------------CHHHHHHHHHHHHHTTCSEEEEESCCHHHHHHHHHHC------SSCEEEESSCSCSSEEEEC
T ss_pred ecccCCeEE-EeCh---HHHHHHHHHHHHHHHcCCcEEEEecCCHHHHHHHHHhC------CCCEEEECCCCCCCcceee
Confidence 444434321 1321 34688999999999999999987766544455555555 477777644 355555555
Q ss_pred chhhhcC----CCCCCCccccCCCCCCHHHHHHHHHhcccccc
Q 013861 305 FREALDS----NPRFGDKKTYQMNPANYREALVEAQADESEGA 343 (435)
Q Consensus 305 FRdA~~S----ap~fgDRktYQmdp~N~~EAlre~~~D~~EGA 343 (435)
+-|.++- .|+| -|.|----....+|+++-..|+++|.
T Consensus 215 ~~D~lG~~~~~~pkf--~k~y~~~~~~~~~a~~~y~~~V~~~~ 255 (275)
T 1o66_A 215 MHDMLGIFPGKTAKF--VKNFMQGHDSVQAAVRAYVAEVKAKT 255 (275)
T ss_dssp HHHHTTCSSSSCCTT--CCCSSTTCSSHHHHHHHHHHHHHHTC
T ss_pred HHhhcCCCCCCCCCc--hhhhhhHHHHHHHHHHHHHHHHhcCC
Confidence 6677664 4666 35564333458899999999988874
No 34
>2ze3_A DFA0005; organic waste LEFT-OVER decomposition, alkaliphilic, ICL/PEPM superfamily, alpha-ketoglutarate LIG isomerase; HET: AKG; 1.65A {Deinococcus ficus}
Probab=90.80 E-value=2.8 Score=40.40 Aligned_cols=159 Identities=21% Similarity=0.234 Sum_probs=98.7
Q ss_pred HcCCCeEEEeec-CCCCCCCcccCcCcCCCCCH-----HHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCcccc
Q 013861 168 DVGVNSVVLFPK-VPDALKSPTGDEAYNDNGLV-----PRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMN 241 (435)
Q Consensus 168 ~~GI~sv~LFgv-i~~~~Kd~~Gs~A~~~~g~v-----~raIr~iK~~~Pdl~IitDVcLc~YTshGHcGIv~e~g~IdN 241 (435)
+.|++.+.+=|- +. .+..+.+-+++ ...++.|.+..+ +-|++|.=. |+=++
T Consensus 34 ~aG~~ai~vsg~s~a-------~~~G~pD~~~vt~~em~~~~~~I~~~~~-~pviaD~d~---------------Gyg~~ 90 (275)
T 2ze3_A 34 AAGFTAIGTTSAGIA-------HARGRTDGQTLTRDEMGREVEAIVRAVA-IPVNADIEA---------------GYGHA 90 (275)
T ss_dssp HHTCSCEEECHHHHH-------HHSCCCSSSSSCHHHHHHHHHHHHHHCS-SCEEEECTT---------------CSSSS
T ss_pred HcCCCEEEECcHHHH-------HhCCCCCCCCCCHHHHHHHHHHHHhhcC-CCEEeecCC---------------CCCCC
Confidence 459999887321 11 02223333333 356677777765 678888633 32122
Q ss_pred HHHHHHHHHHHHHHHHcCCCeecCCCC-------------CCchHHHHHHHHHHCCCCCceeechhhhhcccccccchhh
Q 013861 242 DETVHQLCKQAVSQARAGADVVSPSDM-------------MDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREA 308 (435)
Q Consensus 242 D~Tv~~Lak~Avs~A~AGADiVAPSDM-------------MDGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRdA 308 (435)
-+. ..+.+..+.++||+.|--.|= |=.||.++|++-+..|- +.-|+.-+--|...
T Consensus 91 ~~~---~~~~v~~l~~aGaagv~iED~~~~~~k~l~~~~e~~~~I~aa~~a~~~~g~-~~~i~aRtda~~~~-------- 158 (275)
T 2ze3_A 91 PED---VRRTVEHFAALGVAGVNLEDATGLTPTELYDLDSQLRRIEAARAAIDASGV-PVFLNARTDTFLKG-------- 158 (275)
T ss_dssp HHH---HHHHHHHHHHTTCSEEEEECBCSSSSSCBCCHHHHHHHHHHHHHHHHHHTS-CCEEEEECCTTTTT--------
T ss_pred HHH---HHHHHHHHHHcCCcEEEECCCcCCCCCccCCHHHHHHHHHHHHHhHhhcCC-CeEEEEechhhhcc--------
Confidence 223 334444556799999877765 34688888888877774 55555554433321
Q ss_pred hcCCCCCCCccccCCCC-CCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhCCCCeEEEEec
Q 013861 309 LDSNPRFGDKKTYQMNP-ANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAAYQVS 382 (435)
Q Consensus 309 ~~Sap~fgDRktYQmdp-~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~~lPvaaYqVS 382 (435)
.|+| + ...+|+|+.+..=.+-|||+|+ + |+.+-.|.++++.+..++|+- +..+
T Consensus 159 ------~g~~------~~~~~~~ai~Ra~ay~eAGAd~i~-------~-e~~~~~~~~~~i~~~~~~P~n-~~~~ 212 (275)
T 2ze3_A 159 ------HGAT------DEERLAETVRRGQAYADAGADGIF-------V-PLALQSQDIRALADALRVPLN-VMAF 212 (275)
T ss_dssp ------CSSS------HHHHHHHHHHHHHHHHHTTCSEEE-------C-TTCCCHHHHHHHHHHCSSCEE-EECC
T ss_pred ------cccc------chhhHHHHHHHHHHHHHCCCCEEE-------E-CCCCCHHHHHHHHHhcCCCEE-EecC
Confidence 1221 1 1257788888777777999998 5 567889999999999999983 4443
No 35
>3i4e_A Isocitrate lyase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.69A {Burkholderia pseudomallei}
Probab=90.68 E-value=1.2 Score=46.17 Aligned_cols=120 Identities=20% Similarity=0.278 Sum_probs=81.8
Q ss_pred HHHHHHHHcCCCeecCCCCC---------C-----------chHHHHHHHHHHCCCCCceeechhhhhcccccccchhhh
Q 013861 250 KQAVSQARAGADVVSPSDMM---------D-----------GRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREAL 309 (435)
Q Consensus 250 k~Avs~A~AGADiVAPSDMM---------D-----------GrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRdA~ 309 (435)
+..-.+.+|||--|--.|-. + .||.|+|.+.|..|- ++-|++-+--++..|-.
T Consensus 171 ~~vk~~~~aGaaGi~iEDq~~~~KkCGH~~gk~lv~~~e~v~rI~Aar~A~~~~g~-d~~IiARTDa~~a~l~~------ 243 (439)
T 3i4e_A 171 ELMKAMIEAGASGVHFEDQLASVKKCGHMGGKVLVPTREAVAKLTAARLAADVMGT-PTVLVARTDAEAADLIT------ 243 (439)
T ss_dssp HHHHHHHHHTCSEEEEESBCGGGCBCSTTCBCCBCCHHHHHHHHHHHHHHHHHHTC-CCEEEEEECTTTCCEES------
T ss_pred HHHHHHHHcCCEEEEEeCCCCCccccCCCCCCeecCHHHHHHHHHHHHHHHHhcCC-CeEEEEEcCcccccccc------
Confidence 33445678888776665543 2 489999999998885 78888776544443321
Q ss_pred cCCCCCCC---------ccc-cCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhh----CCCC
Q 013861 310 DSNPRFGD---------KKT-YQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDK----YPLP 375 (435)
Q Consensus 310 ~Sap~fgD---------Rkt-YQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~----~~lP 375 (435)
|..-..| +.. |+. ....+|||+.+..=.+ |||+|+ +.|+++-++-|+++.+. ++++
T Consensus 244 -s~~d~~d~~fi~G~r~~eg~~~~-~~gldeAI~Ra~AY~~-GAD~if-------~E~~~~~~eei~~f~~~v~~~~P~~ 313 (439)
T 3i4e_A 244 -SDIDDNDKPYLTGERTVEGFFRT-KPGLEQAISRGLAYAP-YADLIW-------CETGKPDLEYAKKFAEAIHKQFPGK 313 (439)
T ss_dssp -CCCCTTTGGGEEEEECTTSCEEE-CCSHHHHHHHHHHHTT-TCSEEE-------ECCSSCCHHHHHHHHHHHHHHSTTC
T ss_pred -cccccccchhhcccCcccccccc-cCCHHHHHHHHHHHHh-hCCEEE-------ecCCCCCHHHHHHHHHHhcccCCce
Confidence 1100011 111 222 2458999999987665 999999 99999999999887764 5678
Q ss_pred eEEEEechHHH
Q 013861 376 IAAYQVSGEYS 386 (435)
Q Consensus 376 vaaYqVSGEYa 386 (435)
+.+|+-|..|.
T Consensus 314 ~l~~~~sPsfn 324 (439)
T 3i4e_A 314 LLSYNCSPSFN 324 (439)
T ss_dssp EEEEECCSSSC
T ss_pred EEeeCCCCCCc
Confidence 88999988664
No 36
>1to3_A Putative aldolase YIHT; beta-alpha barrel, structural genomics, PSI, protein structure initiative; 2.70A {Salmonella typhimurium} SCOP: c.1.10.1
Probab=90.21 E-value=0.83 Score=44.34 Aligned_cols=118 Identities=24% Similarity=0.246 Sum_probs=72.6
Q ss_pred HcCCCeec----C-CCC----CCchHHHHHHHHHHCCCCCceeechhhhhcccccccchhhhcCCCCCCCccccCCCCCC
Q 013861 257 RAGADVVS----P-SDM----MDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPAN 327 (435)
Q Consensus 257 ~AGADiVA----P-SDM----MDGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRdA~~Sap~fgDRktYQmdp~N 327 (435)
++|||+|. . +|- |--.+..+++...+.|. -+-|+.|+- |+ ..+|.... |.+
T Consensus 119 ~~GAdaV~vlv~~~~d~~~~~~~~~i~~v~~~~~~~G~-p~lv~~~~~-------g~---------~v~~~~~~---~~~ 178 (304)
T 1to3_A 119 RDGAKALKLLVLWRSDEDAQQRLNMVKEFNELCHSNGL-LSIIEPVVR-------PP---------RCGDKFDR---EQA 178 (304)
T ss_dssp HTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHTTTC-EEEEEEEEC-------CC---------SSCSCCCH---HHH
T ss_pred HcCCCEEEEEEEcCCCccHHHHHHHHHHHHHHHHHcCC-cEEEEEECC-------CC---------ccccCCCh---hHH
Confidence 56999996 2 221 22456666666666775 455665432 21 12332222 356
Q ss_pred HHHHHHHHHhcccccccEEecccCCCcccCC-------CchHHHHHHHHhhCCCC-eEEEEechHHHHHHHHHHCCCCch
Q 013861 328 YREALVEAQADESEGADILLFSVLGSQVKPG-------LPYLDVIRLLRDKYPLP-IAAYQVSGEYSMIKAGGALKMIDE 399 (435)
Q Consensus 328 ~~EAlre~~~D~~EGADilM~~~~~~~VKPa-------l~YLDIIr~vk~~~~lP-vaaYqVSGEYaMikaAa~~G~ide 399 (435)
..++.+++. +-|||+|= |+|. -...++++.....+++| |.+ .|-+++
T Consensus 179 v~~aa~~a~---~lGaD~iK-------v~~~~~~~g~~~~~~~vv~~~~~~~~~P~Vv~---------------aGG~~~ 233 (304)
T 1to3_A 179 IIDAAKELG---DSGADLYK-------VEMPLYGKGARSDLLTASQRLNGHINMPWVIL---------------SSGVDE 233 (304)
T ss_dssp HHHHHHHHT---TSSCSEEE-------ECCGGGGCSCHHHHHHHHHHHHHTCCSCEEEC---------------CTTSCT
T ss_pred HHHHHHHHH---HcCCCEEE-------eCCCcCCCCCHHHHHHHHHhccccCCCCeEEE---------------ecCCCH
Confidence 666666665 37999998 8884 12234444433347899 653 455564
Q ss_pred hhHHHHHHHHHHHhcccEeeh
Q 013861 400 QRVMMESLMCLRRAGADIILT 420 (435)
Q Consensus 400 ~~~v~Esl~~ikRAGAd~IiT 420 (435)
+.++|.+...+++||+.++.
T Consensus 234 -~~~~~~~~~a~~aGa~Gv~v 253 (304)
T 1to3_A 234 -KLFPRAVRVAMEAGASGFLA 253 (304)
T ss_dssp -TTHHHHHHHHHHTTCCEEEE
T ss_pred -HHHHHHHHHHHHcCCeEEEE
Confidence 46789999999999999874
No 37
>2yzr_A Pyridoxal biosynthesis lyase PDXS; redox protein, pyridoxal phosphate, structural genomi NPPSFA; 2.30A {Methanocaldococcus jannaschii}
Probab=90.14 E-value=1.5 Score=43.91 Aligned_cols=88 Identities=25% Similarity=0.256 Sum_probs=47.5
Q ss_pred HHHHHHHHHcCCCeecC-------------CCCCCchHHHHHHHHHHCCCCCceeechhhhhcccccccch-------hh
Q 013861 249 CKQAVSQARAGADVVSP-------------SDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFR-------EA 308 (435)
Q Consensus 249 ak~Avs~A~AGADiVAP-------------SDMMDGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFR-------dA 308 (435)
++||..+.++||+.|.= +..|. -...|++..+. .+++|| +|.---++-+.+ |+
T Consensus 27 ~e~A~~ae~aGA~aI~~l~~v~~d~~~~~G~arm~-~p~~i~~I~~a---v~iPV~---~K~rig~~~e~qilea~GaD~ 99 (330)
T 2yzr_A 27 VEQAQIAEEAGAVAVMALERVPADIRAAGGVARMS-DPALIEEIMDA---VSIPVM---AKCRIGHTTEALVLEAIGVDM 99 (330)
T ss_dssp HHHHHHHHHHTCSEEEECSSCHHHHC--CCCCCCC-CHHHHHHHHHH---CSSCEE---EEEETTCHHHHHHHHHTTCSE
T ss_pred HHHHHHHHHcCCCEEEecCCccccccCCcchhhcC-CHHHHHHHHHh---cCCCeE---EEEeecchHHHHHHHHcCCCE
Confidence 66899999999999911 11222 23334444332 368888 443332222211 11
Q ss_pred hcC----CCC----CCCccccCC----CCCCHHHHHHHHHhcccccccEEe
Q 013861 309 LDS----NPR----FGDKKTYQM----NPANYREALVEAQADESEGADILL 347 (435)
Q Consensus 309 ~~S----ap~----fgDRktYQm----dp~N~~EAlre~~~D~~EGADilM 347 (435)
++. +|. .-+|+.|.. +-+|..||+|.+ +||||||-
T Consensus 100 Id~s~~l~p~d~~~~i~k~~~~~~~~~~a~~lgea~r~~----~~Ga~~i~ 146 (330)
T 2yzr_A 100 IDESEVLTQADPFFHIYKKKFNVPFVCGARNLGEAVRRI----WEGAAMIR 146 (330)
T ss_dssp EEEETTSCCSCSSCCCCGGGCSSCEEEECSSHHHHHHHH----HHTCSEEE
T ss_pred EehhccCCHHHHHHHhhhhhcccchhhccccHHHHHHHH----hcCcceee
Confidence 111 111 123444433 457888888876 78999999
No 38
>1s2w_A Phosphoenolpyruvate phosphomutase; phosphonopyruvate, phosphonate biosynthesis pathway, isomera; 1.69A {Mytilus edulis} SCOP: c.1.12.7 PDB: 1m1b_A 1s2t_A 1s2v_A 1pym_A 1s2u_A
Probab=89.53 E-value=2.7 Score=40.93 Aligned_cols=125 Identities=20% Similarity=0.202 Sum_probs=83.4
Q ss_pred HHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCC--------Cc-
Q 013861 201 RTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMM--------DG- 271 (435)
Q Consensus 201 raIr~iK~~~Pdl~IitDVcLc~YTshGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMM--------DG- 271 (435)
..++.|.+..+ +=|++|.=. |+ -|.+ ...+.+..+.++||+.|--.|=. .|
T Consensus 69 ~~~~~I~~~~~-~PviaD~d~---------------Gy-g~~~---~v~~~v~~l~~aGaagv~iED~~~~k~cgH~gg~ 128 (295)
T 1s2w_A 69 EVLEFMSDASD-VPILLDADT---------------GY-GNFN---NARRLVRKLEDRGVAGACLEDKLFPKTNSLHDGR 128 (295)
T ss_dssp HHHHHHHHTCS-SCEEEECCS---------------SC-SSHH---HHHHHHHHHHHTTCCEEEEECBCC--------CT
T ss_pred HHHHHHHhcCC-CCEEecCCC---------------CC-CCHH---HHHHHHHHHHHcCCcEEEECCCCCCccccccCCC
Confidence 45666666543 337888632 32 1222 34455566668999998877754 22
Q ss_pred ---------hHHHHHHHHHHCCCCCceeechhhhh-cccccccchhhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccc
Q 013861 272 ---------RVGAIRAALDAEGFQHVSIMSYTAKY-ASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESE 341 (435)
Q Consensus 272 ---------rVgAIR~aLD~~Gf~~v~IMSYSaKy-ASafYGPFRdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~E 341 (435)
.+..||.+.+.....+.-|++-+--+ +. ...+|+|+.+..=.+-
T Consensus 129 ~k~l~p~~e~~~rI~Aa~~a~~~~~~~i~aRtda~~a~--------------------------~g~~~ai~Ra~ay~eA 182 (295)
T 1s2w_A 129 AQPLADIEEFALKIKACKDSQTDPDFCIVARVEAFIAG--------------------------WGLDEALKRAEAYRNA 182 (295)
T ss_dssp TCCBCCHHHHHHHHHHHHHHCSSTTCEEEEEECTTTTT--------------------------CCHHHHHHHHHHHHHT
T ss_pred CCcccCHHHHHHHHHHHHHhcccCCcEEEEeehHHhcc--------------------------ccHHHHHHHHHHHHHc
Confidence 26677777766543444555444322 11 2378999999998899
Q ss_pred cccEEecccCCCcccCCCchHHHHHHHHhhCC--CCeEE
Q 013861 342 GADILLFSVLGSQVKPGLPYLDVIRLLRDKYP--LPIAA 378 (435)
Q Consensus 342 GADilM~~~~~~~VKPal~YLDIIr~vk~~~~--lPvaa 378 (435)
|||+|+ +.++.+-.+.++++.+..+ +|+.+
T Consensus 183 GAd~i~-------~e~~~~~~~~~~~i~~~~~~~~P~i~ 214 (295)
T 1s2w_A 183 GADAIL-------MHSKKADPSDIEAFMKAWNNQGPVVI 214 (295)
T ss_dssp TCSEEE-------ECCCSSSSHHHHHHHHHHTTCSCEEE
T ss_pred CCCEEE-------EcCCCCCHHHHHHHHHHcCCCCCEEE
Confidence 999999 9887888999999999887 99964
No 39
>1lt8_A Betaine-homocysteine methyltransferase; homocysteine metabolism, homocysteinemia, zinc, thiol alkyl transfer; HET: CBH CIT; 2.05A {Homo sapiens} SCOP: c.1.26.1 PDB: 1lt7_A* 1umy_A
Probab=89.51 E-value=1.8 Score=44.04 Aligned_cols=227 Identities=16% Similarity=0.136 Sum_probs=133.7
Q ss_pred hHHHHHHH-HHHcCCCeEEE--eecCCCCCCCcccCc---CcCCCCCHHHHHHHHHHHCC--CeEEEeeecccCCCCCCc
Q 013861 158 GLVQEVAK-ARDVGVNSVVL--FPKVPDALKSPTGDE---AYNDNGLVPRTIWLLKDRYP--DLVIYTDVALDPYSSDGH 229 (435)
Q Consensus 158 ~l~~~v~~-~~~~GI~sv~L--Fgvi~~~~Kd~~Gs~---A~~~~g~v~raIr~iK~~~P--dl~IitDVcLc~YTshGH 229 (435)
+++..+.+ -++.|-.-+.- |+.-...++ ..|-+ ...-.-+..+|+++.|+.-- +.+|..++ .||..
T Consensus 54 e~V~~iH~~Yl~AGAdII~TNTf~A~~~~l~-~~G~~~~~~~~~~eln~~Av~LAreAa~~~~~~VAGsI--GP~g~--- 127 (406)
T 1lt8_A 54 EAVRQLHREFLRAGSNVMQTFTFYASEDKLE-NRGNYVLEKISGQEVNEAAADIARQVADEGDALVAGGV--SQTPS--- 127 (406)
T ss_dssp HHHHHHHHHHHHTTCSEEECSCTTCSSCC--------------CHHHHHHHHHHHHHHHTTTTCEEEEEE--CCCHH---
T ss_pred HHHHHHHHHHHHhCccceeccccccCHHHHH-hcCCccchhHHHHHHHHHHHHHHHHHHhcCCCEEEEEc--CCccc---
Confidence 36666654 68999884433 553222222 22310 12223477889999987642 36777776 68743
Q ss_pred ceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC-chHHHHHHHHHHCCCCCceeec-hhhhhcccccccchh
Q 013861 230 DGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMD-GRVGAIRAALDAEGFQHVSIMS-YTAKYASSFYGPFRE 307 (435)
Q Consensus 230 cGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMMD-GrVgAIR~aLD~~Gf~~v~IMS-YSaKyASafYGPFRd 307 (435)
.. +.++-|+-.+...+|+-.++++|+|+++---|.| -.+.++.+++.+.| ++||- .+. . .+
T Consensus 128 ---~l--~~~s~eel~~~~~eqi~~L~~~GvDlll~ETi~~~~Eakaa~~a~~~~~---lPv~iS~T~-------~--~~ 190 (406)
T 1lt8_A 128 ---YL--SAKSETEVKKVFLQQLEVFMKKNVDFLIAEYFEHVEEAVWAVETLIASG---KPVAATMAI-------G--PE 190 (406)
T ss_dssp ---HH--TTCHHHHHHHHHHHHHHHHHHHTCSEEEECCCSCHHHHHHHHHHHGGGT---SCEEEEECC-------B--TT
T ss_pred ---cc--CCCCHHHHHHHHHHHHHHHhhCCCCEEEEcccCCHHHHHHHHHHHHHhC---CcEEEEEEE-------C--CC
Confidence 11 3466788888899999999999999999999998 45555556666544 45442 221 0 00
Q ss_pred hhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEeccc-CCCcccCCCchHHHHHHHHhh-----CCCCeEEEEe
Q 013861 308 ALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSV-LGSQVKPGLPYLDVIRLLRDK-----YPLPIAAYQV 381 (435)
Q Consensus 308 A~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~-~~~~VKPal~YLDIIr~vk~~-----~~lPvaaYqV 381 (435)
| + ++=....+++..+.. .|+|.|.+.. +| |. .-+.+|+.+++. .+.|+.+|=-
T Consensus 191 --------G-~----l~G~~~~~~~~~l~~---~~~~avGvNC~~g----P~-~~~~~l~~l~~~~~~~g~~~pl~vyPN 249 (406)
T 1lt8_A 191 --------G-D----LHGVPPGEAAVRLVK---AGASIIGVNCHFD----PT-ISLKTVKLMKEGLEAAQLKAHLMSQPL 249 (406)
T ss_dssp --------B-C----TTCCCHHHHHHHHHT---TTCSEEEEESSSC----HH-HHHHHHHHHHHHHHTTTCCCEEEEECC
T ss_pred --------C-C----cCCCcHHHHHHHhhc---CCCCEEEecCCCC----HH-HHHHHHHHHHHhhhhcCCCccEEEecC
Confidence 1 1 444456666655543 4799999554 22 21 135555666654 3799999998
Q ss_pred chHHHHHHHHHHCCCCchh------------h-HHHHHHHHHHHhcccEee-----h-hcHHHHHHHHh
Q 013861 382 SGEYSMIKAGGALKMIDEQ------------R-VMMESLMCLRRAGADIIL-----T-YFALQAARCLC 431 (435)
Q Consensus 382 SGEYaMikaAa~~G~ide~------------~-~v~Esl~~ikRAGAd~Ii-----T-YfA~~~a~~L~ 431 (435)
+|+..-. ..++|.+.. + -+.+....+..+|+.+|= | .+-..+++++.
T Consensus 250 ag~~~~~---~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~w~~~Ga~iIGGCCGTtPeHI~aia~~l~ 315 (406)
T 1lt8_A 250 AYHTPDA---NKQGFIDLPEFPFGLEPRVATRWDIQKYAREAYNLGVRYIGGCCGFEPYHIRAIAEELA 315 (406)
T ss_dssp SBCCTTC---CTTCGGGSTTTTTSCGGGBCCHHHHHHHHHHHHHHTEEEECCCTTCCHHHHHHHHHHTH
T ss_pred CCCCCcC---CcccccCCccccccCCHHHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHh
Confidence 8763211 146665311 1 256666778889999873 1 34445555554
No 40
>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A*
Probab=89.27 E-value=1.8 Score=44.92 Aligned_cols=39 Identities=23% Similarity=0.245 Sum_probs=27.1
Q ss_pred HHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEeeh
Q 013861 362 LDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILT 420 (435)
Q Consensus 362 LDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G~ide~~~v~Esl~~ikRAGAd~IiT 420 (435)
+++|+.+|+.+++||..=.| .+ .|....+..+|||.|+.
T Consensus 332 ~~~i~~lr~~~~~PvivKgv---------------~~-----~e~A~~a~~aGad~I~v 370 (511)
T 1kbi_A 332 WKDIEELKKKTKLPIVIKGV---------------QR-----TEDVIKAAEIGVSGVVL 370 (511)
T ss_dssp HHHHHHHHHHCSSCEEEEEE---------------CS-----HHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHhCCcEEEEeC---------------CC-----HHHHHHHHHcCCCEEEE
Confidence 67799999999999986533 22 23344556778887754
No 41
>2hjp_A Phosphonopyruvate hydrolase; phosporus-Ca cleavage, PEP mutase/isocitrate lyase superfamily; HET: XYS PPR; 1.90A {Variovorax SP} PDB: 2dua_A* 2hrw_A
Probab=88.65 E-value=2.1 Score=41.68 Aligned_cols=203 Identities=18% Similarity=0.147 Sum_probs=113.6
Q ss_pred CCCCceeechhhhHHHHHHHHHHcCCCeEEEeec-CCCCCCCcccCcCcCCCCCH-----HHHHHHHHHHCCCeEEEeee
Q 013861 146 AMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPK-VPDALKSPTGDEAYNDNGLV-----PRTIWLLKDRYPDLVIYTDV 219 (435)
Q Consensus 146 sMPGv~r~s~~~~l~~~v~~~~~~GI~sv~LFgv-i~~~~Kd~~Gs~A~~~~g~v-----~raIr~iK~~~Pdl~IitDV 219 (435)
.|||+|=...- .+ +.+.|++.+.+=+- +.. +..+.+-+++ ...++.|.+..+ +-|++|.
T Consensus 18 ~~~~a~D~~sA-~~------~~~aG~~ai~vs~~~~a~-------~~G~pD~~~vt~~em~~~~~~I~~~~~-~PviaD~ 82 (290)
T 2hjp_A 18 TAMAAHNPLVA-KL------AEQAGFGGIWGSGFELSA-------SYAVPDANILSMSTHLEMMRAIASTVS-IPLIADI 82 (290)
T ss_dssp EEEECSSHHHH-HH------HHHHTCSEEEECHHHHHH-------HTTSCTTTCSCHHHHHHHHHHHHTTCS-SCEEEEC
T ss_pred EEecCCCHHHH-HH------HHHcCCCEEEEChHHHHH-------hCCCCCCCCCCHHHHHHHHHHHHhcCC-CCEEEEC
Confidence 37777544331 12 23479999888431 110 1223332333 345666666554 3377885
Q ss_pred cccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC-------c-----------hHHHHHHHHH
Q 013861 220 ALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMD-------G-----------RVGAIRAALD 281 (435)
Q Consensus 220 cLc~YTshGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMMD-------G-----------rVgAIR~aLD 281 (435)
= .|+= |- ....+.+..+.++||+.|--.|=.- | .+..||.+.+
T Consensus 83 d---------------~Gyg-~~---~~~~~~v~~l~~aGa~gv~iED~~~~k~cgH~~~~~k~l~p~~e~~~kI~Aa~~ 143 (290)
T 2hjp_A 83 D---------------TGFG-NA---VNVHYVVPQYEAAGASAIVMEDKTFPKDTSLRTDGRQELVRIEEFQGKIAAATA 143 (290)
T ss_dssp T---------------TTTS-SH---HHHHHHHHHHHHHTCSEEEEECBCSSCCC-------CCBCCHHHHHHHHHHHHH
T ss_pred C---------------CCCC-CH---HHHHHHHHHHHHhCCeEEEEcCCCCCccccccccCCCcccCHHHHHHHHHHHHH
Confidence 3 2321 22 2334445556679999987766531 1 1555666665
Q ss_pred HCCCCCceeechhhhhcccccccchhhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCch
Q 013861 282 AEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPY 361 (435)
Q Consensus 282 ~~Gf~~v~IMSYSaKyASafYGPFRdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~Y 361 (435)
.....+.-|++-+--+.. ....+|+|+.+..=.+-|||+|+ +.=..+-
T Consensus 144 a~~~~~~~i~aRtda~~a-------------------------~~g~~~ai~Ra~ay~eAGAd~i~-------~e~~~~~ 191 (290)
T 2hjp_A 144 ARADRDFVVIARVEALIA-------------------------GLGQQEAVRRGQAYEEAGADAIL-------IHSRQKT 191 (290)
T ss_dssp HCSSTTSEEEEEECTTTT-------------------------TCCHHHHHHHHHHHHHTTCSEEE-------ECCCCSS
T ss_pred hcccCCcEEEEeehHhhc-------------------------cccHHHHHHHHHHHHHcCCcEEE-------eCCCCCC
Confidence 543234445444332200 12378999999887788999999 6433788
Q ss_pred HHHHHHHHhhCC--CCeEEEEechHHHHHHHHHHCC-C----------CchhhHHHHHHHHHHHhc
Q 013861 362 LDVIRLLRDKYP--LPIAAYQVSGEYSMIKAGGALK-M----------IDEQRVMMESLMCLRRAG 414 (435)
Q Consensus 362 LDIIr~vk~~~~--lPvaaYqVSGEYaMikaAa~~G-~----------ide~~~v~Esl~~ikRAG 414 (435)
.|.++++.+..+ +|+.+=-+++..--.+.-++.| + ----..+.+.+..|++-|
T Consensus 192 ~~~~~~i~~~~~~~vP~i~n~~~~~~~~~~eL~~lG~v~~v~~~~~~~raa~~a~~~~~~~i~~~g 257 (290)
T 2hjp_A 192 PDEILAFVKSWPGKVPLVLVPTAYPQLTEADIAALSKVGIVIYGNHAIRAAVGAVREVFARIRRDG 257 (290)
T ss_dssp SHHHHHHHHHCCCSSCEEECGGGCTTSCHHHHHTCTTEEEEEECSHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCCEEEeccCCCCCCHHHHHhcCCeeEEEechHHHHHHHHHHHHHHHHHHHcC
Confidence 899999999998 9999832334322334455555 1 011234556666666655
No 42
>3lab_A Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) aldolase; unknown function, aldolase superfamily, class I aldolase, KDPG aldolase domain; 1.84A {Oleispira antarctica} PDB: 3vcr_A
Probab=88.35 E-value=8.2 Score=36.33 Aligned_cols=154 Identities=13% Similarity=0.166 Sum_probs=98.9
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCC
Q 013861 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDG 237 (435)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTshGHcGIv~e~g 237 (435)
..++.++.+++-|++.+-+ .- .++ + -..+|+.||++||+++|-+ |
T Consensus 26 ~a~~~a~al~~gGi~~iEv-t~-----~t~--------~--a~~~I~~l~~~~p~~~IGA-------------------G 70 (217)
T 3lab_A 26 HAIPMAKALVAGGVHLLEV-TL-----RTE--------A--GLAAISAIKKAVPEAIVGA-------------------G 70 (217)
T ss_dssp GHHHHHHHHHHTTCCEEEE-ET-----TST--------T--HHHHHHHHHHHCTTSEEEE-------------------E
T ss_pred HHHHHHHHHHHcCCCEEEE-eC-----CCc--------c--HHHHHHHHHHHCCCCeEee-------------------c
Confidence 4889999999999998766 21 111 1 2379999999999987755 3
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCee-cCCCCCCchHHHHHHHHHHCCCCCceeechhhhhcc--cccccchhhhcCCCC
Q 013861 238 VIMNDETVHQLCKQAVSQARAGADVV-SPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYAS--SFYGPFREALDSNPR 314 (435)
Q Consensus 238 ~IdND~Tv~~Lak~Avs~A~AGADiV-APSDMMDGrVgAIR~aLD~~Gf~~v~IMSYSaKyAS--afYGPFRdA~~Sap~ 314 (435)
.|.+- +++-...+|||++| +|. .|=.| +.|+-+|-- -+-||+=
T Consensus 71 TVlt~-------~~a~~ai~AGA~fivsP~--~~~ev-----------------i~~~~~~~v~~~~~~~~~-------- 116 (217)
T 3lab_A 71 TVCTA-------DDFQKAIDAGAQFIVSPG--LTPEL-----------------IEKAKQVKLDGQWQGVFL-------- 116 (217)
T ss_dssp CCCSH-------HHHHHHHHHTCSEEEESS--CCHHH-----------------HHHHHHHHHHCSCCCEEE--------
T ss_pred cccCH-------HHHHHHHHcCCCEEEeCC--CcHHH-----------------HHHHHHcCCCccCCCeEe--------
Confidence 34433 44555678999976 444 22222 222221100 1112211
Q ss_pred CCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCch--HHHHHHHHhhC-CCCeEEEEechHHHHHHHH
Q 013861 315 FGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPY--LDVIRLLRDKY-PLPIAAYQVSGEYSMIKAG 391 (435)
Q Consensus 315 fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~Y--LDIIr~vk~~~-~lPvaaYqVSGEYaMikaA 391 (435)
-...+..|+++. ++-|+|+|- +=|+..+ ++.|+.++.-+ ++|+.+
T Consensus 117 --------PG~~TptE~~~A----~~~Gad~vK-------~FPa~~~gG~~~lkal~~p~p~i~~~p------------- 164 (217)
T 3lab_A 117 --------PGVATASEVMIA----AQAGITQLK-------CFPASAIGGAKLLKAWSGPFPDIQFCP------------- 164 (217)
T ss_dssp --------EEECSHHHHHHH----HHTTCCEEE-------ETTTTTTTHHHHHHHHHTTCTTCEEEE-------------
T ss_pred --------CCCCCHHHHHHH----HHcCCCEEE-------ECccccccCHHHHHHHHhhhcCceEEE-------------
Confidence 123466777766 467999999 8898876 79999999988 488775
Q ss_pred HHCCCCchhhHHHHHHHHHHHhcccEee
Q 013861 392 GALKMIDEQRVMMESLMCLRRAGADIIL 419 (435)
Q Consensus 392 a~~G~ide~~~v~Esl~~ikRAGAd~Ii 419 (435)
.|-++.+ .+..+..+||.+.+
T Consensus 165 --tGGI~~~-----N~~~~l~aGa~~~v 185 (217)
T 3lab_A 165 --TGGISKD-----NYKEYLGLPNVICA 185 (217)
T ss_dssp --BSSCCTT-----THHHHHHSTTBCCE
T ss_pred --eCCCCHH-----HHHHHHHCCCEEEE
Confidence 5667764 34566678887665
No 43
>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*
Probab=88.32 E-value=1.5 Score=38.82 Aligned_cols=142 Identities=19% Similarity=0.108 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCCCcee-----e-chhhhhcc-----cc-cccc-hhhhc
Q 013861 244 TVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSI-----M-SYTAKYAS-----SF-YGPF-REALD 310 (435)
Q Consensus 244 Tv~~Lak~Avs~A~AGADiVAPSDMMDGrVgAIR~aLD~~Gf~~v~I-----M-SYSaKyAS-----af-YGPF-RdA~~ 310 (435)
+.+.+.+++-...++|+|+|-=-+|-...+..||+.-+..+. ++.| + .+..+-+- .. .|-+ .+.+.
T Consensus 17 d~~~~~~~~~~~~~~G~~~i~l~~~~~~~~~~i~~i~~~~~~-~l~vg~g~~~~~~~i~~a~~~Gad~V~~~~~~~~~~~ 95 (212)
T 2v82_A 17 TPDEALAHVGAVIDAGFDAVEIPLNSPQWEQSIPAIVDAYGD-KALIGAGTVLKPEQVDALARMGCQLIVTPNIHSEVIR 95 (212)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEEETTSTTHHHHHHHHHHHHTT-TSEEEEECCCSHHHHHHHHHTTCCEEECSSCCHHHHH
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHHhCCC-CeEEEeccccCHHHHHHHHHcCCCEEEeCCCCHHHHH
Confidence 345667777777889999998755544556777776665431 3333 0 11111000 00 0000 00000
Q ss_pred CCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCC-chHHHHHHHHhhCC--CCeEEEEechHHHH
Q 013861 311 SNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGL-PYLDVIRLLRDKYP--LPIAAYQVSGEYSM 387 (435)
Q Consensus 311 Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal-~YLDIIr~vk~~~~--lPvaaYqVSGEYaM 387 (435)
....+|.+ .-....+..|+.+. .+.|+|+|. |.|.. .=++.++++++.++ +||.+
T Consensus 96 ~~~~~g~~--~~~g~~t~~e~~~a----~~~G~d~v~-------v~~t~~~g~~~~~~l~~~~~~~ipvia--------- 153 (212)
T 2v82_A 96 RAVGYGMT--VCPGCATATEAFTA----LEAGAQALK-------IFPSSAFGPQYIKALKAVLPSDIAVFA--------- 153 (212)
T ss_dssp HHHHTTCE--EECEECSHHHHHHH----HHTTCSEEE-------ETTHHHHCHHHHHHHHTTSCTTCEEEE---------
T ss_pred HHHHcCCC--EEeecCCHHHHHHH----HHCCCCEEE-------EecCCCCCHHHHHHHHHhccCCCeEEE---------
Confidence 00001111 01225677776433 357999999 65531 12688899988876 88864
Q ss_pred HHHHHHCCCCchhhHHHHHHHHHHHhcccEee
Q 013861 388 IKAGGALKMIDEQRVMMESLMCLRRAGADIIL 419 (435)
Q Consensus 388 ikaAa~~G~ide~~~v~Esl~~ikRAGAd~Ii 419 (435)
.|-++.+ .+..++.+|||.|+
T Consensus 154 ------~GGI~~~-----~i~~~~~~Ga~gv~ 174 (212)
T 2v82_A 154 ------VGGVTPE-----NLAQWIDAGCAGAG 174 (212)
T ss_dssp ------ESSCCTT-----THHHHHHHTCSEEE
T ss_pred ------eCCCCHH-----HHHHHHHcCCCEEE
Confidence 4556543 44556778999876
No 44
>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A
Probab=88.20 E-value=14 Score=33.17 Aligned_cols=181 Identities=13% Similarity=0.184 Sum_probs=98.3
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCC
Q 013861 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDG 237 (435)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTshGHcGIv~e~g 237 (435)
+..+.++.+.+.|+..+-+-.. | | .+.++... ..|+.|++.+ ++-++. |.||.
T Consensus 33 d~~~~a~~~~~~Gad~i~v~~~------d--~--~~~~~~~~-~~i~~i~~~~-~ipv~v-----------~ggI~---- 85 (244)
T 1vzw_A 33 SPLEAALAWQRSGAEWLHLVDL------D--A--AFGTGDNR-ALIAEVAQAM-DIKVEL-----------SGGIR---- 85 (244)
T ss_dssp CHHHHHHHHHHTTCSEEEEEEH------H--H--HHTSCCCH-HHHHHHHHHC-SSEEEE-----------ESSCC----
T ss_pred CHHHHHHHHHHcCCCEEEEecC------c--h--hhcCCChH-HHHHHHHHhc-CCcEEE-----------ECCcC----
Confidence 3688889999999999887432 1 1 12234455 7889998876 343433 33333
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCCCceeechhhhhcccccccchhhhcCCCCCCC
Q 013861 238 VIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGD 317 (435)
Q Consensus 238 ~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMMDGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRdA~~Sap~fgD 317 (435)
+-+. +....++|||.|.-.--.-.....+.+.+...| .++ +.+-..+- | -+.
T Consensus 86 ---~~~~-------~~~~l~~Gad~V~lg~~~l~~p~~~~~~~~~~g-~~~-~~~l~~~~-----g----~v~------- 137 (244)
T 1vzw_A 86 ---DDDT-------LAAALATGCTRVNLGTAALETPEWVAKVIAEHG-DKI-AVGLDVRG-----T----TLR------- 137 (244)
T ss_dssp ---SHHH-------HHHHHHTTCSEEEECHHHHHCHHHHHHHHHHHG-GGE-EEEEEEET-----T----EEC-------
T ss_pred ---CHHH-------HHHHHHcCCCEEEECchHhhCHHHHHHHHHHcC-CcE-EEEEEccC-----C----EEE-------
Confidence 2222 233345899988632211111223555555555 333 33433331 1 000
Q ss_pred ccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCC----chHHHHHHHHhhCCCCeEEEEechHHHHHHHHHH
Q 013861 318 KKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGL----PYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGA 393 (435)
Q Consensus 318 RktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal----~YLDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~ 393 (435)
...++-.-.+..|.+++++. .|+|.|.+. .++|.. +-++.++++++..++||.|
T Consensus 138 ~~g~~~~~~~~~e~~~~~~~---~G~~~i~~~----~~~~~~~~~g~~~~~~~~i~~~~~ipvia--------------- 195 (244)
T 1vzw_A 138 GRGWTRDGGDLYETLDRLNK---EGCARYVVT----DIAKDGTLQGPNLELLKNVCAATDRPVVA--------------- 195 (244)
T ss_dssp CSSSCCCCCBHHHHHHHHHH---TTCCCEEEE----EC-------CCCHHHHHHHHHTCSSCEEE---------------
T ss_pred EcCcccCCCCHHHHHHHHHh---CCCCEEEEe----ccCcccccCCCCHHHHHHHHHhcCCCEEE---------------
Confidence 11111111255665555543 799977632 234433 3489999999999999976
Q ss_pred CCCCchhhHHHHHHHHHHHh---cccEee
Q 013861 394 LKMIDEQRVMMESLMCLRRA---GADIIL 419 (435)
Q Consensus 394 ~G~ide~~~v~Esl~~ikRA---GAd~Ii 419 (435)
.|-+.. .|.+..++++ |||.++
T Consensus 196 ~GGI~~----~~d~~~~~~~~~~Gadgv~ 220 (244)
T 1vzw_A 196 SGGVSS----LDDLRAIAGLVPAGVEGAI 220 (244)
T ss_dssp ESCCCS----HHHHHHHHTTGGGTEEEEE
T ss_pred ECCCCC----HHHHHHHHhhccCCCceee
Confidence 344554 2344556777 999654
No 45
>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*
Probab=88.07 E-value=1.6 Score=41.61 Aligned_cols=92 Identities=20% Similarity=0.242 Sum_probs=58.5
Q ss_pred HHHHHHcCCC-eecCCCCCCchHHHHHHHHHHCCCCCceeechhhhhcccccccchhhhcCCCCCCCccccCCCCCCHHH
Q 013861 252 AVSQARAGAD-VVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYRE 330 (435)
Q Consensus 252 Avs~A~AGAD-iVAPSDMMDGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRdA~~Sap~fgDRktYQmdp~N~~E 330 (435)
+-..+++|+| ++.| |+....+...+++++++|+..+.+|+-+ ...|
T Consensus 112 ~~~~~~aG~dGviv~-Dl~~ee~~~~~~~~~~~gl~~i~liap~--------------------------------s~~e 158 (271)
T 1ujp_A 112 FGLFKQAGATGVILP-DLPPDEDPGLVRLAQEIGLETVFLLAPT--------------------------------STDA 158 (271)
T ss_dssp HHHHHHHTCCEEECT-TCCGGGCHHHHHHHHHHTCEEECEECTT--------------------------------CCHH
T ss_pred HHHHHHcCCCEEEec-CCCHHHHHHHHHHHHHcCCceEEEeCCC--------------------------------CCHH
Confidence 3346788999 8887 7777889999999999998656554433 3334
Q ss_pred HHHHHHhcccccccEEecccC---CCcccCCCchHHHHHHHHhhCCCCeEE
Q 013861 331 ALVEAQADESEGADILLFSVL---GSQVKPGLPYLDVIRLLRDKYPLPIAA 378 (435)
Q Consensus 331 Alre~~~D~~EGADilM~~~~---~~~VKPal~YLDIIr~vk~~~~lPvaa 378 (435)
=+++...+ .+|-+.+. |+. |..-.=...-.+.|+++|+.+++||++
T Consensus 159 ri~~ia~~-~~gfiy~v-s~~G~TG~~~~~~~~~~~~v~~vr~~~~~Pv~v 207 (271)
T 1ujp_A 159 RIATVVRH-ATGFVYAV-SVTGVTGMRERLPEEVKDLVRRIKARTALPVAV 207 (271)
T ss_dssp HHHHHHTT-CCSCEEEE-CC------------CCHHHHHHHHTTCCSCEEE
T ss_pred HHHHHHHh-CCCCEEEE-ecCcccCCCCCCCccHHHHHHHHHhhcCCCEEE
Confidence 44444443 66776555 533 544222233468999999999999974
No 46
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}
Probab=88.05 E-value=2.9 Score=40.49 Aligned_cols=135 Identities=18% Similarity=0.266 Sum_probs=79.7
Q ss_pred CCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCC------
Q 013861 195 DNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDM------ 268 (435)
Q Consensus 195 ~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTshGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDM------ 268 (435)
..|+|++ ++.++..|..++. ..+-||+ +||.||- +.++.|++ -+.++|+|-|.+.+.
T Consensus 11 ~~~~~~~-~~~m~~~~~Gv~~---a~vTPf~---------~dg~iD~-~~l~~lv~---~li~~Gv~Gi~v~GtTGE~~~ 73 (315)
T 3na8_A 11 SSGLVPR-GSHMSASIHGIIG---YTITPFA---------ADGGLDL-PALGRSIE---RLIDGGVHAIAPLGSTGEGAY 73 (315)
T ss_dssp -------------CCCCEEEE---ECCCCBC---------TTSSBCH-HHHHHHHH---HHHHTTCSEEECSSGGGTGGG
T ss_pred ccCcCCC-chhcccccCceEE---EeeCcCC---------CCCCcCH-HHHHHHHH---HHHHcCCCEEEECccccChhh
Confidence 4577774 4555555644443 2355774 5677873 34444443 456799998876653
Q ss_pred --CCchHHHHHHHHHHCCCCCceeechhhhhcccccccchhhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEE
Q 013861 269 --MDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADIL 346 (435)
Q Consensus 269 --MDGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADil 346 (435)
.+=|...++.+.+..+ .+++|+.-.. + .|.+|++..++.=.+-|||.+
T Consensus 74 Ls~~Er~~v~~~~v~~~~-grvpViaGvg---------------~--------------~~t~~ai~la~~A~~~Gadav 123 (315)
T 3na8_A 74 LSDPEWDEVVDFTLKTVA-HRVPTIVSVS---------------D--------------LTTAKTVRRAQFAESLGAEAV 123 (315)
T ss_dssp SCHHHHHHHHHHHHHHHT-TSSCBEEECC---------------C--------------SSHHHHHHHHHHHHHTTCSEE
T ss_pred CCHHHHHHHHHHHHHHhC-CCCcEEEecC---------------C--------------CCHHHHHHHHHHHHhcCCCEE
Confidence 3567777777777654 3677765421 1 156888888877777899999
Q ss_pred ecccCCCcccCCCch-------HHHHHHHHhhCCCCeEEEEech
Q 013861 347 LFSVLGSQVKPGLPY-------LDVIRLLRDKYPLPIAAYQVSG 383 (435)
Q Consensus 347 M~~~~~~~VKPal~Y-------LDIIr~vk~~~~lPvaaYqVSG 383 (435)
| |=|-..| .+-.+.+.+.+++||.-||+-+
T Consensus 124 l-------v~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P~ 160 (315)
T 3na8_A 124 M-------VLPISYWKLNEAEVFQHYRAVGEAIGVPVMLYNNPG 160 (315)
T ss_dssp E-------ECCCCSSCCCHHHHHHHHHHHHHHCSSCEEEEECHH
T ss_pred E-------ECCCCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCcc
Confidence 9 5433211 3445567788899999999755
No 47
>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}
Probab=87.70 E-value=2.9 Score=40.55 Aligned_cols=115 Identities=20% Similarity=0.284 Sum_probs=73.8
Q ss_pred cCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCC--------CCchHHHHHHHHHHCCCCCceeechhhhhcccccccc
Q 013861 234 REDGVIMNDETVHQLCKQAVSQARAGADVVSPSDM--------MDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPF 305 (435)
Q Consensus 234 ~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDM--------MDGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPF 305 (435)
++||.||-| .++.|+ --+.++|+|-|.+.+. .+=|...++.+.+..+ .+++|+.-..
T Consensus 35 ~~dg~iD~~-~l~~li---~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~-grvpViaGvg---------- 99 (315)
T 3si9_A 35 DDNGAIDEK-AFCNFV---EWQITQGINGVSPVGTTGESPTLTHEEHKRIIELCVEQVA-KRVPVVAGAG---------- 99 (315)
T ss_dssp CTTSCBCHH-HHHHHH---HHHHHTTCSEEECSSTTTTGGGSCHHHHHHHHHHHHHHHT-TSSCBEEECC----------
T ss_pred CCCCCcCHH-HHHHHH---HHHHHcCCCEEEeCccccCccccCHHHHHHHHHHHHHHhC-CCCcEEEeCC----------
Confidence 356788743 344443 3456799999877663 4567777887777654 3677775421
Q ss_pred hhhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCc-hHHHHHHHHhhCCCCeEEEEech
Q 013861 306 REALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLP-YLDVIRLLRDKYPLPIAAYQVSG 383 (435)
Q Consensus 306 RdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~-YLDIIr~vk~~~~lPvaaYqVSG 383 (435)
+ .|.+|++..++.=.+-|||.+|. +--...||..- ..+=.+.+.+.+++||..||+-|
T Consensus 100 -----~--------------~st~~ai~la~~A~~~Gadavlv-~~P~y~~~~~~~l~~~f~~va~a~~lPiilYn~P~ 158 (315)
T 3si9_A 100 -----S--------------NSTSEAVELAKHAEKAGADAVLV-VTPYYNRPNQRGLYTHFSSIAKAISIPIIIYNIPS 158 (315)
T ss_dssp -----C--------------SSHHHHHHHHHHHHHTTCSEEEE-ECCCSSCCCHHHHHHHHHHHHHHCSSCEEEEECHH
T ss_pred -----C--------------CCHHHHHHHHHHHHhcCCCEEEE-CCCCCCCCCHHHHHHHHHHHHHcCCCCEEEEeCch
Confidence 1 25888888887777789999991 11111233210 13444577788899999999855
No 48
>3eoo_A Methylisocitrate lyase; seattle structural genomics center for infectious disease, ssgcid; 2.90A {Burkholderia pseudomallei 1655} SCOP: c.1.12.7
Probab=86.76 E-value=1.8 Score=42.41 Aligned_cols=155 Identities=25% Similarity=0.269 Sum_probs=99.2
Q ss_pred HHcCCCeEEEee-cCCCCCCCcccCcCcCCCCCH-----HHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCccc
Q 013861 167 RDVGVNSVVLFP-KVPDALKSPTGDEAYNDNGLV-----PRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIM 240 (435)
Q Consensus 167 ~~~GI~sv~LFg-vi~~~~Kd~~Gs~A~~~~g~v-----~raIr~iK~~~Pdl~IitDVcLc~YTshGHcGIv~e~g~Id 240 (435)
-+.|++.+.+=+ -+.. .+..+.+.+++ ...++.|.+.. ++-|++|.=. |+-
T Consensus 39 e~aGf~ai~vs~~s~a~------~~~G~pD~~~vt~~em~~~~~~I~r~~-~~PviaD~d~---------------Gyg- 95 (298)
T 3eoo_A 39 EAVGFKAVYLSGGGVAA------NSLGIPDLGISTMDDVLVDANRITNAT-NLPLLVDIDT---------------GWG- 95 (298)
T ss_dssp HHHTCSCEEECHHHHHH------HTTCCCSSSCCCHHHHHHHHHHHHHHC-CSCEEEECTT---------------CSS-
T ss_pred HHcCCCEEEECcHHHHH------HhcCCCCCCCCCHHHHHHHHHHHHhhc-CCeEEEECCC---------------CCC-
Confidence 356999988833 1110 01223333443 34556665554 4568888632 321
Q ss_pred cHHHHHHHHHHHHHHHHcCCCeecCCCCC--------Cc--------hHHHHHHHHHHCCCCCceeechhhhhccccccc
Q 013861 241 NDETVHQLCKQAVSQARAGADVVSPSDMM--------DG--------RVGAIRAALDAEGFQHVSIMSYTAKYASSFYGP 304 (435)
Q Consensus 241 ND~Tv~~Lak~Avs~A~AGADiVAPSDMM--------DG--------rVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGP 304 (435)
|-+ ...+.+-.+.++||+.|--.|-. .| .|..||.+.+...=.+.-|++-+--|+.
T Consensus 96 ~~~---~v~~~v~~l~~aGaagv~iEDq~~~k~cGh~~gk~l~~~~e~~~ri~Aa~~A~~~~~~~I~ARTDa~~~----- 167 (298)
T 3eoo_A 96 GAF---NIARTIRSFIKAGVGAVHLEDQVGQKRCGHRPGKECVPAGEMVDRIKAAVDARTDETFVIMARTDAAAA----- 167 (298)
T ss_dssp SHH---HHHHHHHHHHHTTCSEEEEECBCCCCCTTCCCCCCBCCHHHHHHHHHHHHHHCSSTTSEEEEEECTHHH-----
T ss_pred CHH---HHHHHHHHHHHhCCeEEEECCCCCCcccCCCCCCeecCHHHHHHHHHHHHHhccCCCeEEEEeehhhhh-----
Confidence 222 33344556678999988777743 22 2666777776654357788877654531
Q ss_pred chhhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhCCCCeEEEEe
Q 013861 305 FREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAAYQV 381 (435)
Q Consensus 305 FRdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~~lPvaaYqV 381 (435)
...+|||+.+..=.+-|||+|+ + |++.-.|-|+++.+.+++|+.+--+
T Consensus 168 ---------------------~gldeai~Ra~ay~~AGAD~if-------~-~~~~~~ee~~~~~~~~~~Pl~~n~~ 215 (298)
T 3eoo_A 168 ---------------------EGIDAAIERAIAYVEAGADMIF-------P-EAMKTLDDYRRFKEAVKVPILANLT 215 (298)
T ss_dssp ---------------------HHHHHHHHHHHHHHHTTCSEEE-------E-CCCCSHHHHHHHHHHHCSCBEEECC
T ss_pred ---------------------cCHHHHHHHHHhhHhcCCCEEE-------e-CCCCCHHHHHHHHHHcCCCeEEEec
Confidence 1368999999998889999999 6 7778899999999999999977444
No 49
>3tr9_A Dihydropteroate synthase; biosynthesis of cofactors, prosthetic groups, and carriers, transferase; HET: PT1; 1.90A {Coxiella burnetii}
Probab=86.70 E-value=1.2 Score=44.05 Aligned_cols=103 Identities=21% Similarity=0.333 Sum_probs=68.5
Q ss_pred hcCCC-CCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCc--------------hHHHHHHHHhhCC
Q 013861 309 LDSNP-RFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLP--------------YLDVIRLLRDKYP 373 (435)
Q Consensus 309 ~~Sap-~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~--------------YLDIIr~vk~~~~ 373 (435)
+.-+| +|-| .| .+.++|+..++.-++||||||= +=|.--.|+-. -+-+|+.+++.++
T Consensus 34 lNvTpDSFsd--~~----~~~~~al~~A~~~v~~GAdIID--IGgeSTrPga~~~~~~V~~~eE~~Rv~pvI~~l~~~~~ 105 (314)
T 3tr9_A 34 INVSPNSFYH--PH----LDLNSALRTAEKMVDEGADILD--IGGEATNPFVDIKTDSPSTQIELDRLLPVIDAIKKRFP 105 (314)
T ss_dssp EECSTTCSBC--BC----CSHHHHHHHHHHHHHTTCSEEE--EECCCSCTTC-----CHHHHHHHHHHHHHHHHHHHHCC
T ss_pred EeCCCCchhh--cc----CCHHHHHHHHHHHHHCCCCEEE--ECCCCCCCCcccccCCCCHHHHHHHHHHHHHHHHhhCC
Confidence 45566 4666 23 4789999999999999999987 33334578766 3567888888889
Q ss_pred CCeEEEEechHHHHHHHHHHCCC--Cch---hhHHHHHHHHHHHhcccEeehhc
Q 013861 374 LPIAAYQVSGEYSMIKAGGALKM--IDE---QRVMMESLMCLRRAGADIILTYF 422 (435)
Q Consensus 374 lPvaaYqVSGEYaMikaAa~~G~--ide---~~~v~Esl~~ikRAGAd~IiTYf 422 (435)
+||..= |=....+++|.++|. |+. .+ .-|.+.-+++.|+-+|+...
T Consensus 106 vpISID--T~~~~Va~aAl~aGa~iINDVsg~~-~~~m~~v~a~~g~~vVlMh~ 156 (314)
T 3tr9_A 106 QLISVD--TSRPRVMREAVNTGADMINDQRALQ-LDDALTTVSALKTPVCLMHF 156 (314)
T ss_dssp SEEEEE--CSCHHHHHHHHHHTCCEEEETTTTC-STTHHHHHHHHTCCEEEECC
T ss_pred CeEEEe--CCCHHHHHHHHHcCCCEEEECCCCC-chHHHHHHHHhCCeEEEECC
Confidence 988653 233456777777663 221 11 12445566778999988653
No 50
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A
Probab=86.62 E-value=3.8 Score=38.98 Aligned_cols=115 Identities=21% Similarity=0.330 Sum_probs=73.2
Q ss_pred cCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCC--------CCchHHHHHHHHHHCCCCCceeechhhhhcccccccc
Q 013861 234 REDGVIMNDETVHQLCKQAVSQARAGADVVSPSDM--------MDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPF 305 (435)
Q Consensus 234 ~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDM--------MDGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPF 305 (435)
++||.||- +.++.+.+ -+.++|+|-+-+.+. .+=|...++.+.+..+ .+++|+.-..
T Consensus 14 ~~dg~iD~-~~l~~lv~---~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~-gr~pviaGvg---------- 78 (291)
T 3tak_A 14 LKDGGVDW-KSLEKLVE---WHIEQGTNSIVAVGTTGEASTLSMEEHTQVIKEIIRVAN-KRIPIIAGTG---------- 78 (291)
T ss_dssp CTTSCBCH-HHHHHHHH---HHHHHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHT-TSSCEEEECC----------
T ss_pred CCCCCcCH-HHHHHHHH---HHHHCCCCEEEECccccccccCCHHHHHHHHHHHHHHhC-CCCeEEEeCC----------
Confidence 45678873 34444444 456899998776553 3456777777777665 3677776422
Q ss_pred hhhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCC-chHHHHHHHHhhCCCCeEEEEech
Q 013861 306 REALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGL-PYLDVIRLLRDKYPLPIAAYQVSG 383 (435)
Q Consensus 306 RdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal-~YLDIIr~vk~~~~lPvaaYqVSG 383 (435)
+ .|.+|+++.++.=.+-|||.+|. +--...||.. -..+-.+.+.+.+++||.-||+-+
T Consensus 79 -----~--------------~~t~~ai~la~~a~~~Gadavlv-~~P~y~~~~~~~l~~~f~~ia~a~~lPiilYn~P~ 137 (291)
T 3tak_A 79 -----A--------------NSTREAIELTKAAKDLGADAALL-VTPYYNKPTQEGLYQHYKAIAEAVELPLILYNVPG 137 (291)
T ss_dssp -----C--------------SSHHHHHHHHHHHHHHTCSEEEE-ECCCSSCCCHHHHHHHHHHHHHHCCSCEEEEECHH
T ss_pred -----C--------------CCHHHHHHHHHHHHhcCCCEEEE-cCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeccc
Confidence 1 25888888887777789999991 1111123321 014445577788899999999744
No 51
>3s1x_A Probable transaldolase; alpha-beta barrel, conformational selection, domain swapping transferase; HET: I22; 1.65A {Thermoplasma acidophilum} PDB: 3s1u_A* 3s1v_A* 3s0c_A* 3s1w_A*
Probab=86.45 E-value=1.3 Score=41.87 Aligned_cols=66 Identities=30% Similarity=0.318 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHcCCCeecC-----CCC-CCc--hHHHHHHHHHHCCCCCceeechhhhhcccccccchhhhcCCCCCCCc
Q 013861 247 QLCKQAVSQARAGADVVSP-----SDM-MDG--RVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDK 318 (435)
Q Consensus 247 ~Lak~Avs~A~AGADiVAP-----SDM-MDG--rVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRdA~~Sap~fgDR 318 (435)
.-..||+.-|+|||+.||| .|. .|| .|..|++.++..|| ++-||.=|
T Consensus 113 fS~~QA~~Aa~AGa~yISPfvgRi~d~g~dG~~~v~~i~~~~~~~~~-~T~IlaAS------------------------ 167 (223)
T 3s1x_A 113 FNPIQALLAAKAGVTYVSPFVGRLDDIGEDGMQIIDMIRTIFNNYII-KTQILVAS------------------------ 167 (223)
T ss_dssp CSHHHHHHHHHTTCSEEEEBSHHHHHTTSCTHHHHHHHHHHHHHTTC-CSEEEEBS------------------------
T ss_pred CCHHHHHHHHHcCCeEEEeecchHhhcCCCHHHHHHHHHHHHHHcCC-CCEEEEEe------------------------
Confidence 3456999999999999999 111 134 48888999999887 67788632
Q ss_pred cccCCCCCCHHHHHHHHHhcccccccEEe
Q 013861 319 KTYQMNPANYREALVEAQADESEGADILL 347 (435)
Q Consensus 319 ktYQmdp~N~~EAlre~~~D~~EGADilM 347 (435)
++|..+.+..+. -|||++.
T Consensus 168 ------~Rn~~~v~~aa~----~G~d~~T 186 (223)
T 3s1x_A 168 ------IRNPIHVLRSAV----IGADVVT 186 (223)
T ss_dssp ------CCSHHHHHHHHH----HTCSEEE
T ss_pred ------CCCHHHHHHHHH----cCCCEEE
Confidence 447777655443 4999998
No 52
>1q7z_A 5-methyltetrahydrofolate S-homocysteine methyltransferase; methionine, cobalamin, vitamin B12; 1.70A {Thermotoga maritima} SCOP: c.1.21.2 c.1.26.1 PDB: 1q7q_A 1q7m_A 1q85_A 1q8a_A 1q8j_A* 3bof_A 3bol_A
Probab=86.42 E-value=5.5 Score=41.91 Aligned_cols=269 Identities=13% Similarity=0.107 Sum_probs=159.5
Q ss_pred hHHHhhhhcCCCCCCCceeeEEEeeCCCCccc--CCCCCceee-chh-hhHHHHHHH-HHHcCCCeEEE--eecCCCCCC
Q 013861 113 PAMRASFQETNLSPANFVYPLFIHEGEEDTPI--GAMPGCYRL-GWR-HGLVQEVAK-ARDVGVNSVVL--FPKVPDALK 185 (435)
Q Consensus 113 ~~~R~l~~Et~L~~~~LI~PlFV~eg~~~~~I--~sMPGv~r~-s~~-~~l~~~v~~-~~~~GI~sv~L--Fgvi~~~~K 185 (435)
..+++++++. ++|.||--.+.+ ..+++..-+ ++. .++++.+.+ -++.|-.-+.- |+.-+..++
T Consensus 5 ~~l~~~l~~~----------ililDGamGT~L~~~g~~~~~el~~l~~Pe~V~~iH~~Yl~AGAdii~TnTf~a~~~~l~ 74 (566)
T 1q7z_A 5 REVSKLLSER----------VLLLDGAYGTEFMKYGYDDLPEELNIKAPDVVLKVHRSYIESGSDVILTNTFGATRMKLR 74 (566)
T ss_dssp HHHHHHHHHC----------CEECCCCSHHHHHHTTCCSCGGGHHHHCHHHHHHHHHHHHHHTCSEEECSCTTCSHHHHG
T ss_pred hHHHHHHcCC----------eEEEEChHHHHHHHCCCCCCchhhcccCHHHHHHHHHHHHHhhcceeecCcccCCHHHHH
Confidence 3566666542 677787522211 234554322 221 236666664 67899883332 443221111
Q ss_pred CcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecC
Q 013861 186 SPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSP 265 (435)
Q Consensus 186 d~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTshGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAP 265 (435)
+.|-+ ..-.-+..+++++.|+.-.+=+|..+ +.||... +...|.+.-|+-.+...+|+-.++++|+|++.-
T Consensus 75 -~~g~~-~~~~el~~~av~lAr~a~~~~~VAGs--iGP~g~~-----~~~~~~~~~~e~~~~~~~qi~~l~~~gvD~l~~ 145 (566)
T 1q7z_A 75 -KHGLE-DKLDPIVRNAVRIARRAAGEKLVFGD--IGPTGEL-----PYPLGSTLFEEFYENFRETVEIMVEEGVDGIIF 145 (566)
T ss_dssp -GGTCG-GGHHHHHHHHHHHHHHHHTTSEEEEE--ECCCSCC-----BTTTSSBCHHHHHHHHHHHHHHHHHTTCSEEEE
T ss_pred -hcCch-HHHHHHHHHHHHHHHHHHhCCeEEEe--CCCcccC-----CCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 12211 11123677899988876532155555 4577653 122456777888999999999999999999999
Q ss_pred CCCCC-chHHHHHHHHHHCCCCCceee-chhhhhcccccccchhhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccc
Q 013861 266 SDMMD-GRVGAIRAALDAEGFQHVSIM-SYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGA 343 (435)
Q Consensus 266 SDMMD-GrVgAIR~aLD~~Gf~~v~IM-SYSaKyASafYGPFRdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGA 343 (435)
--|.| -...++..++.+. |.++++| |++.+ . ...-++=....+++..+.. .|+
T Consensus 146 ET~~~~~Ea~aa~~a~~~~-~~~~Pv~vS~t~~-~--------------------~g~~~~G~~~~~~~~~l~~---~~~ 200 (566)
T 1q7z_A 146 ETFSDILELKAAVLAAREV-SRDVFLIAHMTFD-E--------------------KGRSLTGTDPANFAITFDE---LDI 200 (566)
T ss_dssp EEECCHHHHHHHHHHHHHH-CSSSCEEEEECCC-T--------------------TSCCTTSCCHHHHHHHHHT---SSC
T ss_pred eccCCHHHHHHHHHHHHHh-CCCCcEEEEEEEc-C--------------------CCeeCCCCcHHHHHHHhhc---cCC
Confidence 99988 4566777777664 4455554 33321 0 0112333456777776654 589
Q ss_pred cEEeccc-CCCcccCCCchHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEee---
Q 013861 344 DILLFSV-LGSQVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIIL--- 419 (435)
Q Consensus 344 DilM~~~-~~~~VKPal~YLDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G~ide~~~v~Esl~~ikRAGAd~Ii--- 419 (435)
|.|.+.. +| |. ....+|+.+++.++.|+.+|==+|+-... . ....|-...+.+-+.+..+..+|+.+|=
T Consensus 201 ~avG~NC~~g----p~-~~~~~l~~l~~~~~~p~~vyPNaG~p~~~-~-~~~~~~~~p~~~a~~~~~~~~~G~~iiGGCC 273 (566)
T 1q7z_A 201 DALGINCSLG----PE-EILPIFQELSQYTDKFLVVEPNAGKPIVE-N-GKTVYPLKPHDFAVHIDSYYELGVNIFGGCC 273 (566)
T ss_dssp SEEEEESSSC----HH-HHHHHHHHHHHTCCSEEEEECCSSSCEEE-T-TEEECCCCHHHHHTTHHHHHHTTCSEECCCT
T ss_pred CEEEEeCCCC----HH-HHHHHHHHHHhcCCCEEEEEcCCCCCccc-C-CccccCCCHHHHHHHHHHHHHcCCcEEcccc
Confidence 9999444 22 21 34677888888889999999888754110 0 1112322235577888899999998873
Q ss_pred --h-hcHHHHHHHHhc
Q 013861 420 --T-YFALQAARCLCG 432 (435)
Q Consensus 420 --T-YfA~~~a~~L~~ 432 (435)
| .+-..+++++.+
T Consensus 274 GTtP~hI~aia~~~~~ 289 (566)
T 1q7z_A 274 GTTPEHVKLFRKVLGN 289 (566)
T ss_dssp TCCHHHHHHHHHHHCS
T ss_pred CCCHHHHHHHHHHhcC
Confidence 1 344556666653
No 53
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=86.28 E-value=5.3 Score=38.37 Aligned_cols=109 Identities=21% Similarity=0.267 Sum_probs=72.0
Q ss_pred cCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCC------C--CchHHHHHHHHHHCCCCCceeechhhhhcccccccc
Q 013861 234 REDGVIMNDETVHQLCKQAVSQARAGADVVSPSDM------M--DGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPF 305 (435)
Q Consensus 234 ~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDM------M--DGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPF 305 (435)
++||.|| -+.++.|++ -+.++|+|-|.+.+. | +=|...++.+.+..+ .+++|+.-..
T Consensus 29 ~~dg~iD-~~~l~~lv~---~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~-grvpviaGvg---------- 93 (304)
T 3cpr_A 29 TESGDID-IAAGREVAA---YLVDKGLDSLVLAGTTGESPTTTAAEKLELLKAVREEVG-DRAKLIAGVG---------- 93 (304)
T ss_dssp CTTSCBC-HHHHHHHHH---HHHHTTCCEEEESSTTTTTTTSCHHHHHHHHHHHHHHHT-TTSEEEEECC----------
T ss_pred CCCCCcC-HHHHHHHHH---HHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhC-CCCcEEecCC----------
Confidence 3567776 444444444 456789998876542 2 247777888877654 3677775321
Q ss_pred hhhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCch-------HHHHHHHHhhCCCCeEE
Q 013861 306 REALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPY-------LDVIRLLRDKYPLPIAA 378 (435)
Q Consensus 306 RdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~Y-------LDIIr~vk~~~~lPvaa 378 (435)
+ .|.+|++..++.=.+-|||.+| |=|-..| .+=.+.+.+.+++||..
T Consensus 94 -----~--------------~st~~ai~la~~A~~~Gadavl-------v~~P~y~~~~~~~l~~~f~~ia~a~~lPiil 147 (304)
T 3cpr_A 94 -----T--------------NNTRTSVELAEAAASAGADGLL-------VVTPYYSKPSQEGLLAHFGAIAAATEVPICL 147 (304)
T ss_dssp -----C--------------SCHHHHHHHHHHHHHTTCSEEE-------EECCCSSCCCHHHHHHHHHHHHHHCCSCEEE
T ss_pred -----C--------------CCHHHHHHHHHHHHhcCCCEEE-------ECCCCCCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 1 3688998888776678999999 5443211 33445677888999999
Q ss_pred EEech
Q 013861 379 YQVSG 383 (435)
Q Consensus 379 YqVSG 383 (435)
||+-|
T Consensus 148 Yn~P~ 152 (304)
T 3cpr_A 148 YDIPG 152 (304)
T ss_dssp EECHH
T ss_pred EeCcc
Confidence 99743
No 54
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=86.23 E-value=4.6 Score=38.62 Aligned_cols=115 Identities=24% Similarity=0.356 Sum_probs=73.2
Q ss_pred cCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCC--------CCchHHHHHHHHHHCCCCCceeechhhhhcccccccc
Q 013861 234 REDGVIMNDETVHQLCKQAVSQARAGADVVSPSDM--------MDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPF 305 (435)
Q Consensus 234 ~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDM--------MDGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPF 305 (435)
++||.|| -+.++.+++ -+.++|+|-|.+.+. .+=|...++.+.+..+ .+++|+.-..
T Consensus 20 ~~dg~iD-~~~l~~lv~---~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~-grvpviaGvg---------- 84 (297)
T 3flu_A 20 NQDGSIH-YEQLRDLID---WHIENGTDGIVAVGTTGESATLSVEEHTAVIEAVVKHVA-KRVPVIAGTG---------- 84 (297)
T ss_dssp CTTSCBC-HHHHHHHHH---HHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHT-TSSCEEEECC----------
T ss_pred CCCCCcC-HHHHHHHHH---HHHHcCCCEEEeCccccCcccCCHHHHHHHHHHHHHHhC-CCCcEEEeCC----------
Confidence 4568887 344444444 456899998776553 3456777777777665 4677776422
Q ss_pred hhhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCc-hHHHHHHHHhhCCCCeEEEEech
Q 013861 306 REALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLP-YLDVIRLLRDKYPLPIAAYQVSG 383 (435)
Q Consensus 306 RdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~-YLDIIr~vk~~~~lPvaaYqVSG 383 (435)
+ .|.+|+++.++.=.+-|||.+|. +--...||..- -.+=.+.+.+.+++||.-||+-|
T Consensus 85 -----~--------------~~t~~ai~la~~a~~~Gadavlv-~~P~y~~~~~~~l~~~f~~va~a~~lPiilYn~P~ 143 (297)
T 3flu_A 85 -----A--------------NNTVEAIALSQAAEKAGADYTLS-VVPYYNKPSQEGIYQHFKTIAEATSIPMIIYNVPG 143 (297)
T ss_dssp -----C--------------SSHHHHHHHHHHHHHTTCSEEEE-ECCCSSCCCHHHHHHHHHHHHHHCCSCEEEEECHH
T ss_pred -----C--------------cCHHHHHHHHHHHHHcCCCEEEE-CCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEECCc
Confidence 1 25888888887767789999991 11112233210 13445577788899999999744
No 55
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*
Probab=85.92 E-value=3.4 Score=40.64 Aligned_cols=109 Identities=22% Similarity=0.284 Sum_probs=71.9
Q ss_pred cCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCC--------CCchHHHHHHHHHHCCCCCceeechhhhhcccccccc
Q 013861 234 REDGVIMNDETVHQLCKQAVSQARAGADVVSPSDM--------MDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPF 305 (435)
Q Consensus 234 ~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDM--------MDGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPF 305 (435)
++||.||- +.++.|++ -+.++|+|-|.+.+. .+=|...++.+.+..+ .+++|+.=..
T Consensus 44 ~~dg~ID~-~~l~~lv~---~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~ve~~~-grvpViaGvg---------- 108 (343)
T 2v9d_A 44 TADGQLDK-PGTAALID---DLIKAGVDGLFFLGSGGEFSQLGAEERKAIARFAIDHVD-RRVPVLIGTG---------- 108 (343)
T ss_dssp CTTSSBCH-HHHHHHHH---HHHHTTCSCEEESSTTTTGGGSCHHHHHHHHHHHHHHHT-TSSCEEEECC----------
T ss_pred CCCCCcCH-HHHHHHHH---HHHHcCCCEEEeCccccChhhCCHHHHHHHHHHHHHHhC-CCCcEEEecC----------
Confidence 35678873 34444444 456789998876543 2347777787777654 3677765422
Q ss_pred hhhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCch-------HHHHHHHHhhCCCCeEE
Q 013861 306 REALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPY-------LDVIRLLRDKYPLPIAA 378 (435)
Q Consensus 306 RdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~Y-------LDIIr~vk~~~~lPvaa 378 (435)
+ .|.+|++..++.=.+-|||.+| |=|-..| .+=.+.+.+.+++||..
T Consensus 109 -----~--------------~st~eai~la~~A~~~Gadavl-------v~~P~Y~~~s~~~l~~~f~~VA~a~~lPiil 162 (343)
T 2v9d_A 109 -----G--------------TNARETIELSQHAQQAGADGIV-------VINPYYWKVSEANLIRYFEQVADSVTLPVML 162 (343)
T ss_dssp -----S--------------SCHHHHHHHHHHHHHHTCSEEE-------EECCSSSCCCHHHHHHHHHHHHHTCSSCEEE
T ss_pred -----C--------------CCHHHHHHHHHHHHhcCCCEEE-------ECCCCCCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 1 2588888888776778999999 5443211 34445777888999999
Q ss_pred EEech
Q 013861 379 YQVSG 383 (435)
Q Consensus 379 YqVSG 383 (435)
|++-+
T Consensus 163 Yn~P~ 167 (343)
T 2v9d_A 163 YNFPA 167 (343)
T ss_dssp EECHH
T ss_pred EeCch
Confidence 99754
No 56
>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*
Probab=85.82 E-value=0.53 Score=42.43 Aligned_cols=58 Identities=14% Similarity=0.168 Sum_probs=38.8
Q ss_pred CCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhCCCCeEE
Q 013861 316 GDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAA 378 (435)
Q Consensus 316 gDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~~lPvaa 378 (435)
||+.+|+.. .+..|..++.+ +.|||.|-+..+-..-.+...+ ++|+++++.+++|+.+
T Consensus 22 g~~~~~~~~-~d~~~~a~~~~---~~Gad~i~v~~~d~~~~~~~~~-~~i~~i~~~~~ipv~v 79 (244)
T 2y88_A 22 GKAGSQTEY-GSAVDAALGWQ---RDGAEWIHLVDLDAAFGRGSNH-ELLAEVVGKLDVQVEL 79 (244)
T ss_dssp TEEEEEEEE-EEHHHHHHHHH---HTTCSEEEEEEHHHHTTSCCCH-HHHHHHHHHCSSEEEE
T ss_pred cccccceec-CCHHHHHHHHH---HcCCCEEEEEcCcccccCCChH-HHHHHHHHhcCCcEEE
Confidence 666777642 25555444332 4699999854432222466667 9999999999999876
No 57
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=85.43 E-value=4.7 Score=38.81 Aligned_cols=109 Identities=23% Similarity=0.292 Sum_probs=73.0
Q ss_pred cCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCC--------CCchHHHHHHHHHHCCCCCceeechhhhhcccccccc
Q 013861 234 REDGVIMNDETVHQLCKQAVSQARAGADVVSPSDM--------MDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPF 305 (435)
Q Consensus 234 ~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDM--------MDGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPF 305 (435)
++||.||- +.++.|+ --+.++|+|-|.+.+. .+=|...++.+.+..+ .+++|+.-..
T Consensus 28 ~~dg~iD~-~~l~~lv---~~li~~Gv~gi~v~GttGE~~~Lt~~Er~~v~~~~~~~~~-grvpviaGvg---------- 92 (304)
T 3l21_A 28 SGDGSLDT-ATAARLA---NHLVDQGCDGLVVSGTTGESPTTTDGEKIELLRAVLEAVG-DRARVIAGAG---------- 92 (304)
T ss_dssp CTTSCBCH-HHHHHHH---HHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHT-TTSEEEEECC----------
T ss_pred CCCCCcCH-HHHHHHH---HHHHHcCCCEEEeCccccchhhCCHHHHHHHHHHHHHHhC-CCCeEEEeCC----------
Confidence 35677773 3444444 3556789997766543 3567777888887765 4777775422
Q ss_pred hhhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCch-------HHHHHHHHhhCCCCeEE
Q 013861 306 REALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPY-------LDVIRLLRDKYPLPIAA 378 (435)
Q Consensus 306 RdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~Y-------LDIIr~vk~~~~lPvaa 378 (435)
+ .|.+|++..++.=.+-|||.+| |=|-..| .+=.+.+.+.+++||.-
T Consensus 93 -----~--------------~~t~~ai~la~~a~~~Gadavl-------v~~P~y~~~s~~~l~~~f~~va~a~~lPiil 146 (304)
T 3l21_A 93 -----T--------------YDTAHSIRLAKACAAEGAHGLL-------VVTPYYSKPPQRGLQAHFTAVADATELPMLL 146 (304)
T ss_dssp -----C--------------SCHHHHHHHHHHHHHHTCSEEE-------EECCCSSCCCHHHHHHHHHHHHTSCSSCEEE
T ss_pred -----C--------------CCHHHHHHHHHHHHHcCCCEEE-------ECCCCCCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 1 1478888888777778999999 5443211 34456777888999999
Q ss_pred EEech
Q 013861 379 YQVSG 383 (435)
Q Consensus 379 YqVSG 383 (435)
||+-|
T Consensus 147 Yn~P~ 151 (304)
T 3l21_A 147 YDIPG 151 (304)
T ss_dssp EECHH
T ss_pred EeCcc
Confidence 99754
No 58
>1xg4_A Probable methylisocitrate lyase; 2-methylisocitrate lyase/inhibitor complex, isocitrate lyase superfamily; HET: ICT; 1.60A {Escherichia coli} PDB: 1xg3_A* 1mum_A 1oqf_A 1ujq_A 1o5q_A
Probab=85.15 E-value=2.9 Score=40.81 Aligned_cols=167 Identities=26% Similarity=0.301 Sum_probs=100.3
Q ss_pred CCCCceeechhhhHHHHHHHHHHcCCCeEEEeec-CCCCCCCcccCcCcCCCCC-----HHHHHHHHHHHCCCeEEEeee
Q 013861 146 AMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPK-VPDALKSPTGDEAYNDNGL-----VPRTIWLLKDRYPDLVIYTDV 219 (435)
Q Consensus 146 sMPGv~r~s~~~~l~~~v~~~~~~GI~sv~LFgv-i~~~~Kd~~Gs~A~~~~g~-----v~raIr~iK~~~Pdl~IitDV 219 (435)
.|||+|=... ..-+.+.|++.+++=+- +.. .+..+.+-++ +...++.|.+..+ +-|++|.
T Consensus 20 ~~~~a~D~~s-------A~~~~~aG~~ai~vs~~~~a~------~~~G~pD~~~vt~~em~~~~~~I~~~~~-~PviaD~ 85 (295)
T 1xg4_A 20 QIVGTINANH-------ALLAQRAGYQAIYLSGGGVAA------GSLGLPDLGISTLDDVLTDIRRITDVCS-LPLLVDA 85 (295)
T ss_dssp EEEECSSHHH-------HHHHHHTTCSCEEECHHHHHH------TTTCCCSSSCSCHHHHHHHHHHHHHHCC-SCEEEEC
T ss_pred EEecCcCHHH-------HHHHHHcCCCEEEECchHhhh------hhcCCCCCCCCCHHHHHHHHHHHHhhCC-CCEEecC
Confidence 3777754432 22233579999888332 111 0112222233 2355666666654 4578886
Q ss_pred cccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCC--------Cc--------hHHHHHHHHHHC
Q 013861 220 ALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMM--------DG--------RVGAIRAALDAE 283 (435)
Q Consensus 220 cLc~YTshGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMM--------DG--------rVgAIR~aLD~~ 283 (435)
=. |+=+|-+.+. +.+..+.++||+.|--.|=. .| .+..||.+.+..
T Consensus 86 d~---------------Gyg~~~~~~~---~~v~~l~~aGa~gv~iEd~~~~k~cgH~~gk~L~p~~~~~~~I~Aa~~a~ 147 (295)
T 1xg4_A 86 DI---------------GFGSSAFNVA---RTVKSMIKAGAAGLHIEDQVGAKRSGHRPNKAIVSKEEMVDRIRAAVDAK 147 (295)
T ss_dssp TT---------------CSSSSHHHHH---HHHHHHHHHTCSEEEEECBCSSCCCTTSSSCCBCCHHHHHHHHHHHHHHC
T ss_pred Cc---------------ccCCCHHHHH---HHHHHHHHcCCeEEEECCCCCCcccCCCCCCccCCHHHHHHHHHHHHHhc
Confidence 32 3212333333 44445557899998766642 11 345666666665
Q ss_pred CCCCceeechhhhhcccccccchhhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCchHH
Q 013861 284 GFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLD 363 (435)
Q Consensus 284 Gf~~v~IMSYSaKyASafYGPFRdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLD 363 (435)
...+.-|+.-+--++. ...+|+|+.+..=.+-|||+|+ +. +.+-.|
T Consensus 148 ~~~~~~i~aRtda~~~--------------------------~gl~~ai~ra~ay~eAGAd~i~-------~e-~~~~~~ 193 (295)
T 1xg4_A 148 TDPDFVIMARTDALAV--------------------------EGLDAAIERAQAYVEAGAEMLF-------PE-AITELA 193 (295)
T ss_dssp SSTTSEEEEEECCHHH--------------------------HCHHHHHHHHHHHHHTTCSEEE-------ET-TCCSHH
T ss_pred cCCCcEEEEecHHhhh--------------------------cCHHHHHHHHHHHHHcCCCEEE-------Ee-CCCCHH
Confidence 4344455554433321 1468999999998899999999 64 677899
Q ss_pred HHHHHHhhCCCCeEE
Q 013861 364 VIRLLRDKYPLPIAA 378 (435)
Q Consensus 364 IIr~vk~~~~lPvaa 378 (435)
.++++.+..++|+.+
T Consensus 194 ~~~~i~~~~~iP~~~ 208 (295)
T 1xg4_A 194 MYRQFADAVQVPILA 208 (295)
T ss_dssp HHHHHHHHHCSCBEE
T ss_pred HHHHHHHHcCCCEEE
Confidence 999999999999976
No 59
>1oy0_A Ketopantoate hydroxymethyltransferase; domain swapping, structural genomics, PSI, protein structure initiative; 2.80A {Mycobacterium tuberculosis} SCOP: c.1.12.8
Probab=84.94 E-value=4.4 Score=39.64 Aligned_cols=171 Identities=19% Similarity=0.225 Sum_probs=99.9
Q ss_pred eEEEeeCCCCcccCCCC-CceeechhhhHHHHHHHHHH-cCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHH
Q 013861 132 PLFIHEGEEDTPIGAMP-GCYRLGWRHGLVQEVAKARD-VGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDR 209 (435)
Q Consensus 132 PlFV~eg~~~~~I~sMP-Gv~r~s~~~~l~~~v~~~~~-~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~ 209 (435)
|+.|.| || |=|..+.. ..++.+.++++ .|...|-|=|- .-+...|+.+.++
T Consensus 96 ~~vvaD---------~pfgsy~~s~~-~a~~na~rl~~eaGa~aVklEdg-----------------~e~~~~I~al~~a 148 (281)
T 1oy0_A 96 ALVVAD---------LPFGSYEAGPT-AALAAATRFLKDGGAHAVKLEGG-----------------ERVAEQIACLTAA 148 (281)
T ss_dssp SEEEEE---------CCTTSSTTCHH-HHHHHHHHHHHTTCCSEEEEEBS-----------------GGGHHHHHHHHHH
T ss_pred CeEEEE---------CCCCcccCCHH-HHHHHHHHHHHHhCCeEEEECCc-----------------HHHHHHHHHHHHC
Confidence 566665 66 35555554 46666666666 89988887331 1356788888887
Q ss_pred CCCeEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCCCce
Q 013861 210 YPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVS 289 (435)
Q Consensus 210 ~Pdl~IitDVcLc~YTshGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMMDGrVgAIR~aLD~~Gf~~v~ 289 (435)
- +=|+..+-|-|=+.|-..|..- -|+ .| ..+.+.+.|..+.+||||+|=+..+-.--..+|.++| +++
T Consensus 149 g--IpV~gHiGLtPqsv~~~ggf~v-~gr--t~-~a~~~i~rA~a~~eAGA~~ivlE~vp~~~a~~it~~l------~iP 216 (281)
T 1oy0_A 149 G--IPVMAHIGFTPQSVNTLGGFRV-QGR--GD-AAEQTIADAIAVAEAGAFAVVMEMVPAELATQITGKL------TIP 216 (281)
T ss_dssp T--CCEEEEEECCC-----------------CH-HHHHHHHHHHHHHHHTCSEEEEESCCHHHHHHHHHHC------SSC
T ss_pred C--CCEEeeecCCcceecccCCeEE-EeC--cH-HHHHHHHHHHHHHHcCCcEEEEecCCHHHHHHHHHhC------CCC
Confidence 4 3367777777766655544432 243 34 6689999999999999999987766544445555555 477
Q ss_pred eechhh-hhcccccccchhhhcCC----CCCCCccccCCCCCCHHHHHHHHHhcccccc
Q 013861 290 IMSYTA-KYASSFYGPFREALDSN----PRFGDKKTYQMNPANYREALVEAQADESEGA 343 (435)
Q Consensus 290 IMSYSa-KyASafYGPFRdA~~Sa----p~fgDRktYQmdp~N~~EAlre~~~D~~EGA 343 (435)
++..-+ .++..=+=-+-|.++-. |+|- |.|----....+|+++-..|+++|.
T Consensus 217 ~igIGaG~~~dgQvLV~~D~lG~~~~~~pkf~--k~y~~~~~~~~~a~~~y~~~V~~~~ 273 (281)
T 1oy0_A 217 TVGIGAGPNCDGQVLVWQDMAGFSGAKTARFV--KRYADVGGELRRAAMQYAQEVAGGV 273 (281)
T ss_dssp EEEESSCSCSSEEEECHHHHTTCSCSCCCTTC--CCCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred EEEeCCCCCCCcceeeHhhhcCCCCCCCCCch--hhhhhhHHHHHHHHHHHHHHHhcCC
Confidence 777644 35555555566777643 5552 3342111114456666666777663
No 60
>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*
Probab=84.88 E-value=11 Score=33.78 Aligned_cols=188 Identities=15% Similarity=0.215 Sum_probs=97.2
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCC
Q 013861 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDG 237 (435)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTshGHcGIv~e~g 237 (435)
+.++.++.+.+.|+..+-+... + |. +.++... ..|+.|++.+ ++-++. |.||.
T Consensus 32 d~~~~a~~~~~~Gad~i~v~~~--d------~~--~~~~~~~-~~i~~i~~~~-~ipv~v-----------~ggi~---- 84 (244)
T 2y88_A 32 SAVDAALGWQRDGAEWIHLVDL--D------AA--FGRGSNH-ELLAEVVGKL-DVQVEL-----------SGGIR---- 84 (244)
T ss_dssp EHHHHHHHHHHTTCSEEEEEEH--H------HH--TTSCCCH-HHHHHHHHHC-SSEEEE-----------ESSCC----
T ss_pred CHHHHHHHHHHcCCCEEEEEcC--c------cc--ccCCChH-HHHHHHHHhc-CCcEEE-----------ECCCC----
Confidence 3788889999999999888542 1 11 1223334 7888998876 343433 44443
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCCCceeechhhhhcccccccchhhhcCCCCCCC
Q 013861 238 VIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGD 317 (435)
Q Consensus 238 ~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMMDGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRdA~~Sap~fgD 317 (435)
+-+. +....++|||.|.-.--.-.....+++.+...| .++ +.+-..+-.. |.++ +. -
T Consensus 85 ---~~~~-------~~~~l~~Gad~V~lg~~~l~~p~~~~~~~~~~g-~~~-~~~ld~~~~~---~~~~--v~------~ 141 (244)
T 2y88_A 85 ---DDES-------LAAALATGCARVNVGTAALENPQWCARVIGEHG-DQV-AVGLDVQIID---GEHR--LR------G 141 (244)
T ss_dssp ---SHHH-------HHHHHHTTCSEEEECHHHHHCHHHHHHHHHHHG-GGE-EEEEEEEEET---TEEE--EE------E
T ss_pred ---CHHH-------HHHHHHcCCCEEEECchHhhChHHHHHHHHHcC-CCE-EEEEeccccC---CCCE--EE------E
Confidence 2222 333345899998643221122233455555555 332 2233322110 1000 00 0
Q ss_pred ccccCCCCCCHHHHHHHHHhcccccccEEecccCC-CcccCCCchHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCC
Q 013861 318 KKTYQMNPANYREALVEAQADESEGADILLFSVLG-SQVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKM 396 (435)
Q Consensus 318 RktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~-~~VKPal~YLDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G~ 396 (435)
| .++-+..+..|.+++++ +.|+|.|.+.... .+-.. .+-++.++++++..++||.| .|-
T Consensus 142 ~-g~~~~~~~~~e~~~~~~---~~G~~~i~~~~~~~~~~~~-g~~~~~~~~l~~~~~ipvia---------------~GG 201 (244)
T 2y88_A 142 R-GWETDGGDLWDVLERLD---SEGCSRFVVTDITKDGTLG-GPNLDLLAGVADRTDAPVIA---------------SGG 201 (244)
T ss_dssp G-GGTEEEEEHHHHHHHHH---HTTCCCEEEEETTTTTTTS-CCCHHHHHHHHTTCSSCEEE---------------ESC
T ss_pred C-CccCCCCCHHHHHHHHH---hCCCCEEEEEecCCccccC-CCCHHHHHHHHHhCCCCEEE---------------ECC
Confidence 1 11111113455555544 3599988732211 11111 24689999999988999876 444
Q ss_pred CchhhHHHHHHHHHHHh---cccEee
Q 013861 397 IDEQRVMMESLMCLRRA---GADIIL 419 (435)
Q Consensus 397 ide~~~v~Esl~~ikRA---GAd~Ii 419 (435)
+.. .|-+..++.+ |||.++
T Consensus 202 I~~----~~d~~~~~~~~~~Gad~v~ 223 (244)
T 2y88_A 202 VSS----LDDLRAIATLTHRGVEGAI 223 (244)
T ss_dssp CCS----HHHHHHHHTTGGGTEEEEE
T ss_pred CCC----HHHHHHHHhhccCCCCEEE
Confidence 554 2344456667 999654
No 61
>3ih1_A Methylisocitrate lyase; alpha-beta structure, TIM-barrel, center for structural GENO infectious diseases, csgid; 2.00A {Bacillus anthracis str} PDB: 3kz2_A
Probab=84.61 E-value=2.6 Score=41.40 Aligned_cols=166 Identities=22% Similarity=0.235 Sum_probs=99.1
Q ss_pred CCCCceeechhhhHHHHHHHHHHcCCCeEEEee-cCCCCCCCcccCcCcCCCCCH-----HHHHHHHHHHCCCeEEEeee
Q 013861 146 AMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFP-KVPDALKSPTGDEAYNDNGLV-----PRTIWLLKDRYPDLVIYTDV 219 (435)
Q Consensus 146 sMPGv~r~s~~~~l~~~v~~~~~~GI~sv~LFg-vi~~~~Kd~~Gs~A~~~~g~v-----~raIr~iK~~~Pdl~IitDV 219 (435)
.|||+|=... ..-+-+.|++.+++=+ -+. .+..+.+-+++ ...++.|.+.. ++-|++|.
T Consensus 32 ~~~~ayD~~s-------A~l~e~aG~dai~vs~~s~a-------~~~G~pD~~~vt~~em~~~~~~I~r~~-~~pviaD~ 96 (305)
T 3ih1_A 32 QIPGAHDAMA-------ALVARNTGFLALYLSGAAYT-------ASKGLPDLGIVTSTEVAERARDLVRAT-DLPVLVDI 96 (305)
T ss_dssp EEEBCSSHHH-------HHHHHHTTCSCEEECHHHHH-------HHHTCCSSSCSCHHHHHHHHHHHHHHH-CCCEEEEC
T ss_pred EEecCcCHHH-------HHHHHHcCCCEEEECcHHHH-------HhCCCCCCCcCCHHHHHHHHHHHHHhc-CCCEEEEC
Confidence 3777754432 1223347999988733 111 01123333443 23445555544 45688886
Q ss_pred cccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCC--------C--------chHHHHHHHHHHC
Q 013861 220 ALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMM--------D--------GRVGAIRAALDAE 283 (435)
Q Consensus 220 cLc~YTshGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMM--------D--------GrVgAIR~aLD~~ 283 (435)
=. |+- |.+ ...+.+-.+.++||+.|--.|=. + -.+..||.+.+.
T Consensus 97 d~---------------Gyg-~~~---~v~~~v~~l~~aGaagv~iED~~~~krcGh~~gk~l~~~~e~~~rI~Aa~~A- 156 (305)
T 3ih1_A 97 DT---------------GFG-GVL---NVARTAVEMVEAKVAAVQIEDQQLPKKCGHLNGKKLVTTEELVQKIKAIKEV- 156 (305)
T ss_dssp TT---------------CSS-SHH---HHHHHHHHHHHTTCSEEEEECBCSSCCTTCTTCCCBCCHHHHHHHHHHHHHH-
T ss_pred CC---------------CCC-CHH---HHHHHHHHHHHhCCcEEEECCCCCCcccCCCCCCcccCHHHHHHHHHHHHHc-
Confidence 32 221 222 23444556678999998666542 2 125555555555
Q ss_pred CCCCceeechhhhhcccccccchhhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCchHH
Q 013861 284 GFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLD 363 (435)
Q Consensus 284 Gf~~v~IMSYSaKyASafYGPFRdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLD 363 (435)
| .+.-|++-+--++. ...+|||+.+..=.+-|||+|+ + |+.+-.|
T Consensus 157 ~-~~~~I~ARtda~~~--------------------------~g~~~ai~Ra~ay~eAGAD~i~-------~-e~~~~~~ 201 (305)
T 3ih1_A 157 A-PSLYIVARTDARGV--------------------------EGLDEAIERANAYVKAGADAIF-------P-EALQSEE 201 (305)
T ss_dssp C-TTSEEEEEECCHHH--------------------------HCHHHHHHHHHHHHHHTCSEEE-------E-TTCCSHH
T ss_pred C-CCeEEEEeeccccc--------------------------cCHHHHHHHHHHHHHcCCCEEE-------E-cCCCCHH
Confidence 4 35556655432210 2478999999888888999999 6 6778899
Q ss_pred HHHHHHhhCCCCeEEEEe
Q 013861 364 VIRLLRDKYPLPIAAYQV 381 (435)
Q Consensus 364 IIr~vk~~~~lPvaaYqV 381 (435)
.++++.+..++|+.+=-+
T Consensus 202 ~~~~i~~~~~~P~~~n~~ 219 (305)
T 3ih1_A 202 EFRLFNSKVNAPLLANMT 219 (305)
T ss_dssp HHHHHHHHSCSCBEEECC
T ss_pred HHHHHHHHcCCCEEEeec
Confidence 999999999999965333
No 62
>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5
Probab=84.32 E-value=13 Score=33.39 Aligned_cols=67 Identities=18% Similarity=0.319 Sum_probs=47.0
Q ss_pred HHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCcc
Q 013861 160 VQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVI 239 (435)
Q Consensus 160 ~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTshGHcGIv~e~g~I 239 (435)
.+.++.+++.|...|.|-.. ..+++. +..+.+.|+.+|+.+|++.|+.++.
T Consensus 91 ~~~i~~~~~~Gad~V~l~~~---~~~~~~-------~~~~~~~i~~i~~~~~~~~v~~~~~------------------- 141 (234)
T 1yxy_A 91 MTEVDQLAALNIAVIAMDCT---KRDRHD-------GLDIASFIRQVKEKYPNQLLMADIS------------------- 141 (234)
T ss_dssp HHHHHHHHTTTCSEEEEECC---SSCCTT-------CCCHHHHHHHHHHHCTTCEEEEECS-------------------
T ss_pred HHHHHHHHHcCCCEEEEccc---ccCCCC-------CccHHHHHHHHHHhCCCCeEEEeCC-------------------
Confidence 67788999999997766432 122111 2367889999999999988887652
Q ss_pred ccHHHHHHHHHHHHHHHHcCCCee
Q 013861 240 MNDETVHQLCKQAVSQARAGADVV 263 (435)
Q Consensus 240 dND~Tv~~Lak~Avs~A~AGADiV 263 (435)
|+ ..+....++|||+|
T Consensus 142 ----t~----~ea~~a~~~Gad~i 157 (234)
T 1yxy_A 142 ----TF----DEGLVAHQAGIDFV 157 (234)
T ss_dssp ----SH----HHHHHHHHTTCSEE
T ss_pred ----CH----HHHHHHHHcCCCEE
Confidence 11 11566678999999
No 63
>1m3u_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; beta-alpha-barrel, TIM-barrel, ketopantoate, selenomethionin decamer; HET: KPL; 1.80A {Escherichia coli} SCOP: c.1.12.8
Probab=84.11 E-value=5.7 Score=38.47 Aligned_cols=165 Identities=21% Similarity=0.271 Sum_probs=106.8
Q ss_pred CCC-ceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCC
Q 013861 147 MPG-CYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYS 225 (435)
Q Consensus 147 MPG-v~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YT 225 (435)
||- -|. +.. ..++.+.++.+.|...|-|=| | .-+...|+.+.++- +=|+.=+-|-|=+
T Consensus 85 ~pfgsy~-~~~-~a~~~a~rl~kaGa~aVklEg----------g-------~e~~~~I~al~~ag--ipV~gHiGLtPq~ 143 (264)
T 1m3u_A 85 LPFMAYA-TPE-QAFENAATVMRAGANMVKIEG----------G-------EWLVETVQMLTERA--VPVCGHLGLTPQS 143 (264)
T ss_dssp CCTTSSS-SHH-HHHHHHHHHHHTTCSEEECCC----------S-------GGGHHHHHHHHHTT--CCEEEEEESCGGG
T ss_pred CCCCCcC-CHH-HHHHHHHHHHHcCCCEEEECC----------c-------HHHHHHHHHHHHCC--CCeEeeecCCcee
Confidence 664 566 764 588888999999999987722 1 13567888888764 2244444444433
Q ss_pred CCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCCCceeechhh-hhccccccc
Q 013861 226 SDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTA-KYASSFYGP 304 (435)
Q Consensus 226 shGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMMDGrVgAIR~aLD~~Gf~~v~IMSYSa-KyASafYGP 304 (435)
.|-..|..- -| ..|+..+.+.+.|..+.+||||+|=+..+-.--..+|.++| +++++..-+ .+++.=+=-
T Consensus 144 v~~~ggf~v-~g--rt~~~a~~~i~rA~a~~eAGA~~ivlE~vp~~~a~~it~~l------~iP~igIGag~~~dgQvLV 214 (264)
T 1m3u_A 144 VNIFGGYKV-QG--RGDEAGDQLLSDALALEAAGAQLLVLECVPVELAKRITEAL------AIPVIGIGAGNVTDGQILV 214 (264)
T ss_dssp HHHHTSSCC-CC--CSHHHHHHHHHHHHHHHHHTCCEEEEESCCHHHHHHHHHHC------SSCEEEESSCTTSSEEEEC
T ss_pred ecccCCeEE-Ee--CCHHHHHHHHHHHHHHHHCCCcEEEEecCCHHHHHHHHHhC------CCCEEEeCCCCCCCcceee
Confidence 222222211 12 24667799999999999999999987766544445555555 477777644 456555555
Q ss_pred chhhhcC----CCCCCCccccCCCCCCHHHHHHHHHhcccccc
Q 013861 305 FREALDS----NPRFGDKKTYQMNPANYREALVEAQADESEGA 343 (435)
Q Consensus 305 FRdA~~S----ap~fgDRktYQmdp~N~~EAlre~~~D~~EGA 343 (435)
+-|.++- .|+| -|.|----....+|+++-..|+++|.
T Consensus 215 ~~D~lG~~~~~~pkf--~k~y~~~~~~~~~a~~~y~~~V~~~~ 255 (264)
T 1m3u_A 215 MHDAFGITGGHIPKF--AKNFLAETGDIRAAVRQYMAEVESGV 255 (264)
T ss_dssp HHHHTTCSCSSCCTT--CCCSSTTTSSHHHHHHHHHHHHHHTC
T ss_pred HHhhcCCCCCCCCCc--chhhhhhHHHHHHHHHHHHHHHhcCC
Confidence 6677664 3666 35664334457899999999988874
No 64
>1o66_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics; HET: MSE; 1.75A {Neisseria meningitidis serogroup B} SCOP: c.1.12.8 PDB: 1o68_A*
Probab=83.76 E-value=8.8 Score=37.44 Aligned_cols=175 Identities=16% Similarity=0.214 Sum_probs=98.6
Q ss_pred CCCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCC-----HHHHHHHHHHHCCCeEEEeeec
Q 013861 146 AMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGL-----VPRTIWLLKDRYPDLVIYTDVA 220 (435)
Q Consensus 146 sMPGv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~-----v~raIr~iK~~~Pdl~IitDVc 220 (435)
.||+.|=+.. .+-+-+.|+..++. | ++.- .....+.+-++ +..-.+.+.+..+...|++|.=
T Consensus 20 ~~~tayDa~s-------A~l~e~aG~d~ilv-G---dSl~--~~~lG~~dt~~vTldemi~h~~aV~r~~~~~~vvaD~p 86 (275)
T 1o66_A 20 AMLTAYESSF-------AALMDDAGVEMLLV-G---DSLG--MAVQGRKSTLPVSLRDMCYHTECVARGAKNAMIVSDLP 86 (275)
T ss_dssp EEEECCSHHH-------HHHHHHTTCCEEEE-C---TTHH--HHTTCCSSSTTCCHHHHHHHHHHHHHHCSSSEEEEECC
T ss_pred EEEeCcCHHH-------HHHHHHcCCCEEEE-C---HHHH--HHHcCCCCCCCCCHHHHHHHHHHHHhhCCCCeEEEECC
Confidence 3777755443 22334689997743 5 2210 01122222222 2245677777888878889954
Q ss_pred ccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCCCceeechhh---hh
Q 013861 221 LDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTA---KY 297 (435)
Q Consensus 221 Lc~YTshGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMMDGrVgAIR~aLD~~Gf~~v~IMSYSa---Ky 297 (435)
+-.|. . |.++..+-|..+.++||+.|=-.|= +-.+..||.+. ++| +++|.+-- ..
T Consensus 87 fgsy~--------------~---s~~~a~~na~rl~kaGa~aVklEdg-~e~~~~I~al~-~ag---IpV~gHiGLtPQs 144 (275)
T 1o66_A 87 FGAYQ--------------Q---SKEQAFAAAAELMAAGAHMVKLEGG-VWMAETTEFLQ-MRG---IPVCAHIGLTPQS 144 (275)
T ss_dssp TTSSS--------------S---CHHHHHHHHHHHHHTTCSEEEEECS-GGGHHHHHHHH-HTT---CCEEEEEESCGGG
T ss_pred CCCcc--------------C---CHHHHHHHHHHHHHcCCcEEEECCc-HHHHHHHHHHH-HcC---CCeEeeeccCcee
Confidence 43330 1 2345556666778899999976653 11355565554 455 35554421 00
Q ss_pred cccccccchhhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhCCCCeE
Q 013861 298 ASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIA 377 (435)
Q Consensus 298 ASafYGPFRdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~~lPva 377 (435)
.. -.|-|+=- | | + ...+++|+.+..=.+-|||+|. + ++.+ -++++++.+..++|+.
T Consensus 145 ~~-~~ggf~v~-------g-r-t-----~~a~~~i~rA~a~~eAGA~~iv-------l-E~vp-~~~a~~it~~l~iP~i 200 (275)
T 1o66_A 145 VF-AFGGYKVQ-------G-R-G-----GKAQALLNDAKAHDDAGAAVVL-------M-ECVL-AELAKKVTETVSCPTI 200 (275)
T ss_dssp TT-C-------------------------CHHHHHHHHHHHHHTTCSEEE-------E-ESCC-HHHHHHHHHHCSSCEE
T ss_pred ec-ccCCeEEE-------e-C-h-----HHHHHHHHHHHHHHHcCCcEEE-------E-ecCC-HHHHHHHHHhCCCCEE
Confidence 00 01222210 0 1 1 1248899999888899999998 5 4455 5899999999999987
Q ss_pred EE
Q 013861 378 AY 379 (435)
Q Consensus 378 aY 379 (435)
..
T Consensus 201 gI 202 (275)
T 1o66_A 201 GI 202 (275)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 65
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=83.41 E-value=1.1 Score=40.53 Aligned_cols=39 Identities=18% Similarity=0.368 Sum_probs=27.4
Q ss_pred cccccEEecccCCCcccCCCchHHHHHHHHhhCCCCeEE
Q 013861 340 SEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAA 378 (435)
Q Consensus 340 ~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~~lPvaa 378 (435)
+.|||.|-++.+...-.-....++.|+++++.+++|+.+
T Consensus 41 ~~Gad~i~v~d~~~~~~~~~~~~~~i~~i~~~~~ipvi~ 79 (253)
T 1thf_D 41 EIGIDELVFLDITASVEKRKTMLELVEKVAEQIDIPFTV 79 (253)
T ss_dssp HTTCCEEEEEESSCSSSHHHHHHHHHHHHHTTCCSCEEE
T ss_pred HcCCCEEEEECCchhhcCCcccHHHHHHHHHhCCCCEEE
Confidence 579999876544321111225689999999999999876
No 66
>2dgd_A 223AA long hypothetical arylmalonate decarboxylas; octamer, alpha/beta structure, lyase; 2.90A {Sulfolobus tokodaii}
Probab=82.92 E-value=0.82 Score=41.20 Aligned_cols=43 Identities=14% Similarity=0.291 Sum_probs=28.3
Q ss_pred HHHHHHHhccc-c--cccEEecccCCCcccCCCchHHHHHHHHhhCCCCeEE
Q 013861 330 EALVEAQADES-E--GADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAA 378 (435)
Q Consensus 330 EAlre~~~D~~-E--GADilM~~~~~~~VKPal~YLDIIr~vk~~~~lPvaa 378 (435)
+.+.++.+.+. + |||.|+.+.- .++.++++..+.+.+++||.-
T Consensus 156 ~~~~~~~~~l~~~~~gadaIvLgCT------~l~~~~~~~~l~~~~g~PVid 201 (223)
T 2dgd_A 156 FTIYRLVKRHLNEVLKADAVYIACT------ALSTYEAVQYLHEDLDMPVVS 201 (223)
T ss_dssp HHHHHHHHTTHHHHTTSSEEEECCT------TSCCTTHHHHHHHHHTSCEEE
T ss_pred HHHHHHHHHHhcccCCCCEEEEeCC------cccHHHHHHHHHHHhCCCEEE
Confidence 33555544443 4 9999993321 355668888888888999763
No 67
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=82.81 E-value=5.3 Score=38.34 Aligned_cols=109 Identities=14% Similarity=0.225 Sum_probs=71.5
Q ss_pred cCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCC--------CCchHHHHHHHHHHCCCCCceeechhhhhcccccccc
Q 013861 234 REDGVIMNDETVHQLCKQAVSQARAGADVVSPSDM--------MDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPF 305 (435)
Q Consensus 234 ~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDM--------MDGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPF 305 (435)
++||.|| -+.++.|++ -+.++|+|-|.+.+. .+=|...++.+.+..+ .+++|+.-.
T Consensus 24 ~~dg~iD-~~~l~~lv~---~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~-grvpViaGv----------- 87 (303)
T 2wkj_A 24 DQQQALD-KASLRRLVQ---FNIQQGIDGLYVGGSTGEAFVQSLSEREQVLEIVAEEAK-GKIKLIAHV----------- 87 (303)
T ss_dssp CTTSSBC-HHHHHHHHH---HHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHT-TTSEEEEEC-----------
T ss_pred CCCCCcC-HHHHHHHHH---HHHHcCCCEEEECeeccChhhCCHHHHHHHHHHHHHHhC-CCCcEEEec-----------
Confidence 4578887 334444443 456789999877553 2357788888887765 377877632
Q ss_pred hhhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCch-------HHHHHHHHhhCC-CCeE
Q 013861 306 REALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPY-------LDVIRLLRDKYP-LPIA 377 (435)
Q Consensus 306 RdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~Y-------LDIIr~vk~~~~-lPva 377 (435)
++ .|.+|++..++.=.+-|||.+| |=|-..| .+=.+.+.+.++ +||.
T Consensus 88 ----g~--------------~~t~~ai~la~~A~~~Gadavl-------v~~P~y~~~s~~~l~~~f~~va~a~~~lPii 142 (303)
T 2wkj_A 88 ----GC--------------VSTAESQQLAASAKRYGFDAVS-------AVTPFYYPFSFEEHCDHYRAIIDSADGLPMV 142 (303)
T ss_dssp ----CC--------------SSHHHHHHHHHHHHHHTCSEEE-------EECCCSSCCCHHHHHHHHHHHHHHHTTCCEE
T ss_pred ----CC--------------CCHHHHHHHHHHHHhCCCCEEE-------ecCCCCCCCCHHHHHHHHHHHHHhCCCCCEE
Confidence 21 1568888777766667999999 5332211 334456677788 9999
Q ss_pred EEEech
Q 013861 378 AYQVSG 383 (435)
Q Consensus 378 aYqVSG 383 (435)
.|++-|
T Consensus 143 lYn~P~ 148 (303)
T 2wkj_A 143 VYNIPA 148 (303)
T ss_dssp EEECHH
T ss_pred EEeCcc
Confidence 999733
No 68
>3r8r_A Transaldolase; pentose phosphate pathway, schiff bases; 1.90A {Bacillus subtilis}
Probab=82.79 E-value=1.8 Score=40.70 Aligned_cols=65 Identities=28% Similarity=0.377 Sum_probs=47.7
Q ss_pred HHHHHHHHHHcCCCeecC-----CCC-CC--chHHHHHHHHHHCCCCCceeechhhhhcccccccchhhhcCCCCCCCcc
Q 013861 248 LCKQAVSQARAGADVVSP-----SDM-MD--GRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKK 319 (435)
Q Consensus 248 Lak~Avs~A~AGADiVAP-----SDM-MD--GrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRdA~~Sap~fgDRk 319 (435)
-..||+.-|+|||+.||| .|. .| ..|..|++.++..|| ++-||.=|
T Consensus 112 S~~Qa~~Aa~AGa~yISPfvgRi~d~~~dG~~~v~~i~~~~~~~~~-~t~ilaAS------------------------- 165 (212)
T 3r8r_A 112 NANQALLAARAGATYVSPFLGRLDDIGHNGLDLISEVKQIFDIHGL-DTQIIAAS------------------------- 165 (212)
T ss_dssp SHHHHHHHHHHTCSEEEEBHHHHHHTTSCHHHHHHHHHHHHHHHTC-CCEEEEBS-------------------------
T ss_pred CHHHHHHHHHcCCeEEEeccchhhhcCCChHHHHHHHHHHHHHcCC-CCEEEEec-------------------------
Confidence 356999999999999999 122 13 357888888888887 77777633
Q ss_pred ccCCCCCCHHHHHHHHHhcccccccEEe
Q 013861 320 TYQMNPANYREALVEAQADESEGADILL 347 (435)
Q Consensus 320 tYQmdp~N~~EAlre~~~D~~EGADilM 347 (435)
++|..+.+..+. -|||++-
T Consensus 166 -----~R~~~~v~~~a~----~G~d~~T 184 (212)
T 3r8r_A 166 -----IRHPQHVTEAAL----RGAHIGT 184 (212)
T ss_dssp -----CCSHHHHHHHHH----TTCSEEE
T ss_pred -----CCCHHHHHHHHH----cCCCEEE
Confidence 457777655443 5999988
No 69
>1oy0_A Ketopantoate hydroxymethyltransferase; domain swapping, structural genomics, PSI, protein structure initiative; 2.80A {Mycobacterium tuberculosis} SCOP: c.1.12.8
Probab=82.63 E-value=2.9 Score=40.87 Aligned_cols=139 Identities=19% Similarity=0.202 Sum_probs=79.4
Q ss_pred HHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCCCceeechhhhhcccccccchhhhcCCCC-----CCCccccCCCC
Q 013861 251 QAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPR-----FGDKKTYQMNP 325 (435)
Q Consensus 251 ~Avs~A~AGADiVAPSDMMDGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRdA~~Sap~-----fgDRktYQmdp 325 (435)
.|....+||.|+|.-.|- ++. -..|+.++..++..-=-.- =.--+.+++.++- || +||.+|
T Consensus 46 sA~l~e~aG~d~ilvGdS----l~~-----~~lG~~dt~~vTldemi~h--~~aV~r~~~~~~vvaD~pfg---sy~~s~ 111 (281)
T 1oy0_A 46 TARIFDEAGIPVLLVGDS----AAN-----VVYGYDTTVPISIDELIPL--VRGVVRGAPHALVVADLPFG---SYEAGP 111 (281)
T ss_dssp HHHHHHTTTCCEEEECTT----HHH-----HTTCCSSSSSCCGGGTHHH--HHHHHHHCTTSEEEEECCTT---SSTTCH
T ss_pred HHHHHHHcCCCEEEECHH----HHH-----HHcCCCCCCCCCHHHHHHH--HHHHHhcCCCCeEEEECCCC---cccCCH
Confidence 344556899999974432 222 2467777655544221000 0011222222222 44 787655
Q ss_pred CCHHHHHHHHHhccc-ccccEEecccCCCcccCCCchHHHHHHHHhhCCCCeEE--------EEechHHHHHHHHHHCCC
Q 013861 326 ANYREALVEAQADES-EGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAA--------YQVSGEYSMIKAGGALKM 396 (435)
Q Consensus 326 ~N~~EAlre~~~D~~-EGADilM~~~~~~~VKPal~YLDIIr~vk~~~~lPvaa--------YqVSGEYaMikaAa~~G~ 396 (435)
+++++.+.+=++ -||+.|- +.=+.-..|.|+.+.+. .+||++ -+.-|-|-..--
T Consensus 112 ---~~a~~na~rl~~eaGa~aVk-------lEdg~e~~~~I~al~~a-gIpV~gHiGLtPqsv~~~ggf~v~gr------ 174 (281)
T 1oy0_A 112 ---TAALAAATRFLKDGGAHAVK-------LEGGERVAEQIACLTAA-GIPVMAHIGFTPQSVNTLGGFRVQGR------ 174 (281)
T ss_dssp ---HHHHHHHHHHHHTTCCSEEE-------EEBSGGGHHHHHHHHHH-TCCEEEEEECCC--------------------
T ss_pred ---HHHHHHHHHHHHHhCCeEEE-------ECCcHHHHHHHHHHHHC-CCCEEeeecCCcceecccCCeEEEeC------
Confidence 777777777666 7999999 77777889999999874 688872 222344533110
Q ss_pred CchhhHHHHHHHHHHHhcccEeeh
Q 013861 397 IDEQRVMMESLMCLRRAGADIILT 420 (435)
Q Consensus 397 ide~~~v~Esl~~ikRAGAd~IiT 420 (435)
-|.-+-++|-..++..||||+|+-
T Consensus 175 t~~a~~~i~rA~a~~eAGA~~ivl 198 (281)
T 1oy0_A 175 GDAAEQTIADAIAVAEAGAFAVVM 198 (281)
T ss_dssp CHHHHHHHHHHHHHHHHTCSEEEE
T ss_pred cHHHHHHHHHHHHHHHcCCcEEEE
Confidence 011145788889999999999964
No 70
>3b8i_A PA4872 oxaloacetate decarboxylase; alpha/beta barrel, helix swapping, lyase; 1.90A {Pseudomonas aeruginosa}
Probab=82.48 E-value=4.5 Score=39.35 Aligned_cols=164 Identities=18% Similarity=0.186 Sum_probs=96.5
Q ss_pred CCCCceeechhhhHHHHHHHHHHcCCCeEEEeec-CCCCCCCcccCcCcCCCCCH-----HHHHHHHHHHCCCeEEEeee
Q 013861 146 AMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPK-VPDALKSPTGDEAYNDNGLV-----PRTIWLLKDRYPDLVIYTDV 219 (435)
Q Consensus 146 sMPGv~r~s~~~~l~~~v~~~~~~GI~sv~LFgv-i~~~~Kd~~Gs~A~~~~g~v-----~raIr~iK~~~Pdl~IitDV 219 (435)
.|||+|=... ..-+-+.|++.+.+=+- +.. . ...+.+-+++ ...++.|.+..+ +-|++|.
T Consensus 24 ~~~~a~D~~s-------A~i~e~aGf~ai~vs~s~~a~---~---~lG~pD~~~vt~~em~~~~~~I~r~~~-~PviaD~ 89 (287)
T 3b8i_A 24 HTASVFDPMS-------ARIAADLGFECGILGGSVASL---Q---VLAAPDFALITLSEFVEQATRIGRVAR-LPVIADA 89 (287)
T ss_dssp ECEECCSHHH-------HHHHHHTTCSCEEECHHHHHH---H---HHSCCSSSCSCHHHHHHHHHHHHTTCS-SCEEEEC
T ss_pred EEecCCCHHH-------HHHHHHcCCCEEEeCcHHHHH---H---hcCCCCCCCCCHHHHHHHHHHHHhcCC-CCEEEEC
Confidence 3788854433 12233469999887321 110 0 1123222333 245566655543 3367775
Q ss_pred cccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCC--------Cc-------hHHHHHHHHHHCC
Q 013861 220 ALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMM--------DG-------RVGAIRAALDAEG 284 (435)
Q Consensus 220 cLc~YTshGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMM--------DG-------rVgAIR~aLD~~G 284 (435)
= .|+= |- +...+.+..+.++||+.|--.|=. +| .+..||.+.+...
T Consensus 90 d---------------~Gyg-~~---~~~~~~v~~l~~aGa~gv~iED~~~pKrcgh~~gkl~~~~e~~~~I~aa~~a~~ 150 (287)
T 3b8i_A 90 D---------------HGYG-NA---LNVMRTVVELERAGIAALTIEDTLLPAQFGRKSTDLICVEEGVGKIRAALEARV 150 (287)
T ss_dssp T---------------TCSS-SH---HHHHHHHHHHHHHTCSEEEEECBCCSCCTTTCTTCBCCHHHHHHHHHHHHHHCC
T ss_pred C---------------CCCC-CH---HHHHHHHHHHHHhCCeEEEEcCCCCccccCCCCCCccCHHHHHHHHHHHHHcCC
Confidence 3 2321 22 334445556667999999877753 22 4666776666553
Q ss_pred CCCceeechhhhhcccccccchhhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHH
Q 013861 285 FQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDV 364 (435)
Q Consensus 285 f~~v~IMSYSaKyASafYGPFRdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDI 364 (435)
- ++|+=-+-. |- . ....+|+|+.+..=.+-|||+|+ +. +.+-.+.
T Consensus 151 ~-----------------~~~~i~aRt-----da---a--~~gl~~ai~Ra~ay~eAGAd~i~-------~e-~~~~~~~ 195 (287)
T 3b8i_A 151 D-----------------PALTIIART-----NA---E--LIDVDAVIQRTLAYQEAGADGIC-------LV-GVRDFAH 195 (287)
T ss_dssp S-----------------TTSEEEEEE-----ET---T--TSCHHHHHHHHHHHHHTTCSEEE-------EE-CCCSHHH
T ss_pred C-----------------CCcEEEEec-----hh---h--hcCHHHHHHHHHHHHHcCCCEEE-------ec-CCCCHHH
Confidence 1 334311100 00 0 02468999999888888999999 65 7888999
Q ss_pred HHHHHhhCCCCeE
Q 013861 365 IRLLRDKYPLPIA 377 (435)
Q Consensus 365 Ir~vk~~~~lPva 377 (435)
++++.+..++|+.
T Consensus 196 ~~~i~~~~~~P~i 208 (287)
T 3b8i_A 196 LEAIAEHLHIPLM 208 (287)
T ss_dssp HHHHHTTCCSCEE
T ss_pred HHHHHHhCCCCEE
Confidence 9999999999998
No 71
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A
Probab=82.17 E-value=22 Score=38.68 Aligned_cols=201 Identities=15% Similarity=0.125 Sum_probs=100.9
Q ss_pred eEEEeeCC-CCcccCCCCCceeechhhhHHHHHHHHHHc--CCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHH
Q 013861 132 PLFIHEGE-EDTPIGAMPGCYRLGWRHGLVQEVAKARDV--GVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKD 208 (435)
Q Consensus 132 PlFV~eg~-~~~~I~sMPGv~r~s~~~~l~~~v~~~~~~--GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~ 208 (435)
.|.|.|-. -+ =..-+|..|++.+ +.++.++.+.++ |+.++=.-|- .. -| ....|-.+++ -..++.|++
T Consensus 102 ~I~I~DTTLRD--G~Qs~~~~r~~~e-dkl~Ia~~Ld~~Gvg~~~IE~gGG--at-fd--~~~~f~~e~p-~e~l~~l~~ 172 (718)
T 3bg3_A 102 GLLLMDTTFRD--AHQSLLATRVRTH-DLKKIAPYVAHNFSKLFSMENWGG--AT-FD--VAMRFLYECP-WRRLQELRE 172 (718)
T ss_dssp SCEEEECTTTH--HHHHHSTTCCCHH-HHHHHHHHHHHHCTTCSEEEEEET--TH-HH--HHHHTSCCCH-HHHHHHHHH
T ss_pred CeEEeecCCCh--hhCCCCCcCCCHH-HHHHHHHHHHHhcCCCcEEEecCC--cc-hh--hccccCCCCH-HHHHHHHHH
Confidence 35677654 11 1124566677886 588888888888 5777776321 00 00 0000111122 347889999
Q ss_pred HCCCeEEEe--ee-cccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHH---HHH
Q 013861 209 RYPDLVIYT--DV-ALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAA---LDA 282 (435)
Q Consensus 209 ~~Pdl~Iit--DV-cLc~YTshGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMMDGrVgAIR~a---LD~ 282 (435)
..|+..+.+ -. +++.||.. . +. ..++.++... ++|+|+|--.+-+. .+..++.. ..+
T Consensus 173 ~~~~~~l~~l~R~~n~vgy~~~-----p---~~-~~~~~i~~a~-------~~Gvd~irIf~s~n-~l~~l~~~i~~ak~ 235 (718)
T 3bg3_A 173 LIPNIPFQMLLRGANAVGYTNY-----P---DN-VVFKFCEVAK-------ENGMDVFRVFDSLN-YLPNMLLGMEAAGS 235 (718)
T ss_dssp HCSSSCEEEEECGGGTTSSSCC-----C---HH-HHHHHHHHHH-------HHTCCEEEEECSSC-CHHHHHHHHHHHHT
T ss_pred HcccchHHHHhccccccccccc-----C---Cc-chHHHHHHHH-------hcCcCEEEEEecHH-HHHHHHHHHHHHHH
Confidence 999854432 11 34455321 1 00 0144444433 46999864433322 23344433 335
Q ss_pred CCCCCceeechhhhhcccccccchhhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCchH
Q 013861 283 EGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPYL 362 (435)
Q Consensus 283 ~Gf~~v~IMSYSaKyASafYGPFRdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YL 362 (435)
.|..-..-++|+.. |..|||.. | +.+..+.-++.=++-|||.|-+.----...|. .+-
T Consensus 236 ~G~~v~~~i~~~~d----~~dp~r~~------------~-----~~e~~~~~a~~l~~~Ga~~I~l~DT~G~~~P~-~v~ 293 (718)
T 3bg3_A 236 AGGVVEAAISYTGD----VADPSRTK------------Y-----SLQYYMGLAEELVRAGTHILCIKDMAGLLKPT-ACT 293 (718)
T ss_dssp TTSEEEEEEECCSC----TTCTTCCT------------T-----CHHHHHHHHHHHHHHTCSEEEEECTTSCCCHH-HHH
T ss_pred cCCeEEEEEEeecc----ccCCCCCC------------C-----CHHHHHHHHHHHHHcCCCEEEEcCcCCCcCHH-HHH
Confidence 56422222445432 23333311 1 33333333333335699999733222223455 356
Q ss_pred HHHHHHHhhC-CCCeEEEEe
Q 013861 363 DVIRLLRDKY-PLPIAAYQV 381 (435)
Q Consensus 363 DIIr~vk~~~-~lPvaaYqV 381 (435)
++|+.+|+++ ++|+. +|-
T Consensus 294 ~lV~~lk~~~p~~~I~-~H~ 312 (718)
T 3bg3_A 294 MLVSSLRDRFPDLPLH-IHT 312 (718)
T ss_dssp HHHHHHHHHSTTCCEE-EEC
T ss_pred HHHHHHHHhCCCCeEE-EEE
Confidence 9999999999 68874 454
No 72
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A
Probab=82.10 E-value=10 Score=35.04 Aligned_cols=172 Identities=22% Similarity=0.273 Sum_probs=91.9
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCC-CCHHHHHHHHHHHC-CCeEEEeeecccCCCCCCcceeecC
Q 013861 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDN-GLVPRTIWLLKDRY-PDLVIYTDVALDPYSSDGHDGIVRE 235 (435)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~-g~v~raIr~iK~~~-Pdl~IitDVcLc~YTshGHcGIv~e 235 (435)
.|.++++.+.+.|+..+-+ = | .| | -|-|| .+=+..++.||+.+ |++.+-+++-. . +
T Consensus 18 ~l~~~i~~l~~~g~d~~h~-D-V----mD--g--~Fvpn~~~G~~~v~~ir~~~~~~~~~dvhLmv--~---------~- 75 (228)
T 3ovp_A 18 NLGAECLRMLDSGADYLHL-D-V----MD--G--HFVPNITFGHPVVESLRKQLGQDPFFDMHMMV--S---------K- 75 (228)
T ss_dssp GHHHHHHHHHHTTCSCEEE-E-E----EB--S--SSSSCBCBCHHHHHHHHHHHCSSSCEEEEEEC--S---------C-
T ss_pred hHHHHHHHHHHcCCCEEEE-E-e----cC--C--CcCcccccCHHHHHHHHHhhCCCCcEEEEEEe--C---------C-
Confidence 3889999999999986554 1 0 11 0 01110 12346888999887 88765333321 1 1
Q ss_pred CCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCCCceeechhhhhcccccccchhhhcCCCCC
Q 013861 236 DGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRF 315 (435)
Q Consensus 236 ~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMMDGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRdA~~Sap~f 315 (435)
- +...+ .++++|||+|.--.--.-.+...-+.+.+.|. +++|
T Consensus 76 ------p---~~~i~---~~~~aGad~itvH~Ea~~~~~~~i~~i~~~G~-k~gv------------------------- 117 (228)
T 3ovp_A 76 ------P---EQWVK---PMAVAGANQYTFHLEATENPGALIKDIRENGM-KVGL------------------------- 117 (228)
T ss_dssp ------G---GGGHH---HHHHHTCSEEEEEGGGCSCHHHHHHHHHHTTC-EEEE-------------------------
T ss_pred ------H---HHHHH---HHHHcCCCEEEEccCCchhHHHHHHHHHHcCC-CEEE-------------------------
Confidence 0 11222 35789999986432111123333334445564 2211
Q ss_pred CCccccCCCCCCHHHHHHHHHhcccccccEEec-cc---CCCcccCCCchHHHHHHHHhhC-CCCeEEEEechHHHHHHH
Q 013861 316 GDKKTYQMNPANYREALVEAQADESEGADILLF-SV---LGSQVKPGLPYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKA 390 (435)
Q Consensus 316 gDRktYQmdp~N~~EAlre~~~D~~EGADilM~-~~---~~~~VKPal~YLDIIr~vk~~~-~lPvaaYqVSGEYaMika 390 (435)
-++|....|.+. .+.+..|+|.+ || +|.|.- .-.-|+-|+++|+.. ++|+ +|
T Consensus 118 ------al~p~t~~e~l~----~~l~~~D~Vl~msv~pGf~Gq~f-~~~~l~ki~~lr~~~~~~~I---~V--------- 174 (228)
T 3ovp_A 118 ------AIKPGTSVEYLA----PWANQIDMALVMTVEPGFGGQKF-MEDMMPKVHWLRTQFPSLDI---EV--------- 174 (228)
T ss_dssp ------EECTTSCGGGTG----GGGGGCSEEEEESSCTTTCSCCC-CGGGHHHHHHHHHHCTTCEE---EE---------
T ss_pred ------EEcCCCCHHHHH----HHhccCCeEEEeeecCCCCCccc-CHHHHHHHHHHHHhcCCCCE---EE---------
Confidence 123333333333 23345787752 21 222221 112488899999876 4655 34
Q ss_pred HHHCCCCchhhHHHHHHHHHHHhcccEeeh
Q 013861 391 GGALKMIDEQRVMMESLMCLRRAGADIILT 420 (435)
Q Consensus 391 Aa~~G~ide~~~v~Esl~~ikRAGAd~IiT 420 (435)
-|-++. |+...+.+||||+++.
T Consensus 175 ---dGGI~~-----~t~~~~~~aGAd~~Vv 196 (228)
T 3ovp_A 175 ---DGGVGP-----DTVHKCAEAGANMIVS 196 (228)
T ss_dssp ---ESSCST-----TTHHHHHHHTCCEEEE
T ss_pred ---eCCcCH-----HHHHHHHHcCCCEEEE
Confidence 455664 6777889999999875
No 73
>3vav_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics, seattle structural genomics center for infectious disease; 1.80A {Burkholderia thailandensis} SCOP: c.1.12.8 PDB: 3ez4_A
Probab=82.01 E-value=2.5 Score=41.18 Aligned_cols=139 Identities=19% Similarity=0.229 Sum_probs=86.3
Q ss_pred HHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCCCceeechhhhhcccccccchhhhcCCCCCCCc--cccCCCCCCHH
Q 013861 252 AVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDK--KTYQMNPANYR 329 (435)
Q Consensus 252 Avs~A~AGADiVAPSDMMDGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRdA~~Sap~fgDR--ktYQmdp~N~~ 329 (435)
|....+||.|+|.-.|.. ++ -..|+.++..++..-=-. .=.--+.++...|-..|= -+| .|..
T Consensus 42 A~l~e~aG~d~ilvGdSl----~~-----~~lG~~dt~~vtldem~~--h~~aV~r~~~~~~vvaD~pfgsY----~s~~ 106 (275)
T 3vav_A 42 AALLDRANVDVQLIGDSL----GN-----VLQGQTTTLPVTLDDIAY--HTACVARAQPRALIVADLPFGTY----GTPA 106 (275)
T ss_dssp HHHHHHTTCSEEEECTTH----HH-----HTTCCSSSTTCCHHHHHH--HHHHHHHTCCSSEEEEECCTTSC----SSHH
T ss_pred HHHHHHcCCCEEEECcHH----HH-----HHcCCCCCCccCHHHHHH--HHHHHHhcCCCCCEEEecCCCCC----CCHH
Confidence 444568999999766532 21 346887776554321000 000123344444443332 256 4778
Q ss_pred HHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhCCCCeEEEEec---------hHHHHHHHHHHCCCCc-h
Q 013861 330 EALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAAYQVS---------GEYSMIKAGGALKMID-E 399 (435)
Q Consensus 330 EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~~lPvaaYqVS---------GEYaMikaAa~~G~id-e 399 (435)
++++-+.+=+++|||.|- +.=+..-.|.|+.+.+ -.+|++. |+- |-|-. .|=-| .
T Consensus 107 ~a~~~a~rl~kaGa~aVk-------lEdg~~~~~~i~~l~~-~GIpv~g-HlgltPq~~~~~gg~~v------qgrt~~~ 171 (275)
T 3vav_A 107 DAFASAVKLMRAGAQMVK-------FEGGEWLAETVRFLVE-RAVPVCA-HVGLTPQSVHAFGGFKV------QGKTEAG 171 (275)
T ss_dssp HHHHHHHHHHHTTCSEEE-------EECCGGGHHHHHHHHH-TTCCEEE-EEESCGGGHHHHC---C------CCCSHHH
T ss_pred HHHHHHHHHHHcCCCEEE-------ECCchhHHHHHHHHHH-CCCCEEE-ecCCCceEEeccCCeEE------EcCCHHH
Confidence 888888777788999999 7777777999999987 5899987 432 33321 11111 1
Q ss_pred hhHHHHHHHHHHHhcccEeeh
Q 013861 400 QRVMMESLMCLRRAGADIILT 420 (435)
Q Consensus 400 ~~~v~Esl~~ikRAGAd~IiT 420 (435)
-+-++|-..++..||||+|+-
T Consensus 172 a~~~i~rA~a~~eAGA~~ivl 192 (275)
T 3vav_A 172 AAQLLRDARAVEEAGAQLIVL 192 (275)
T ss_dssp HHHHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEe
Confidence 256788899999999999864
No 74
>2vp8_A Dihydropteroate synthase 2; RV1207 transferase, folate biosynthesis, antibiotic resistance; 2.64A {Mycobacterium tuberculosis}
Probab=82.00 E-value=1.7 Score=43.06 Aligned_cols=104 Identities=22% Similarity=0.228 Sum_probs=57.9
Q ss_pred hcCCC-CCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCch----------HHHHHHHHhhC-CCCe
Q 013861 309 LDSNP-RFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPY----------LDVIRLLRDKY-PLPI 376 (435)
Q Consensus 309 ~~Sap-~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~Y----------LDIIr~vk~~~-~lPv 376 (435)
+.-+| +|-|--.|+ +.++|+..++.-++||||||= +=|.--.|+ .. +-+|+.+++.+ ++||
T Consensus 48 lNvTPDSFsdgg~~~----~~~~a~~~A~~~v~~GAdIID--IGgeSTrPG-~~v~~~eEl~Rv~pvI~~l~~~~~~vpI 120 (318)
T 2vp8_A 48 VNRTPDSFYDKGATF----SDAAARDAVHRAVADGADVID--VGGVKAGPG-ERVDVDTEITRLVPFIEWLRGAYPDQLI 120 (318)
T ss_dssp EC------------------CHHHHHHHHHHHHTTCSEEE--EC-----------CHHHHHHHHHHHHHHHHHHSTTCEE
T ss_pred EeCCCCcccCCCccC----CHHHHHHHHHHHHHCCCCEEE--ECCCcCCCC-CCCCHHHHHHHHHHHHHHHHhhCCCCeE
Confidence 34466 576766664 678999999999999999998 222223477 43 56788888888 8998
Q ss_pred EEEEechHHHHHHHHHHCC--CCch---hhHHHHHHHHHHHhcccEeehhc
Q 013861 377 AAYQVSGEYSMIKAGGALK--MIDE---QRVMMESLMCLRRAGADIILTYF 422 (435)
Q Consensus 377 aaYqVSGEYaMikaAa~~G--~ide---~~~v~Esl~~ikRAGAd~IiTYf 422 (435)
.. =|=....+++|.++| +|+. .+ .-|.+.-.++.|+-+|+...
T Consensus 121 SI--DT~~~~VaeaAl~aGa~iINDVsg~~-d~~m~~vaa~~g~~vVlmh~ 168 (318)
T 2vp8_A 121 SV--DTWRAQVAKAACAAGADLINDTWGGV-DPAMPEVAAEFGAGLVCAHT 168 (318)
T ss_dssp EE--ECSCHHHHHHHHHHTCCEEEETTSSS-STTHHHHHHHHTCEEEEECC
T ss_pred EE--eCCCHHHHHHHHHhCCCEEEECCCCC-chHHHHHHHHhCCCEEEECC
Confidence 65 244556778877776 3331 00 11344456788999999765
No 75
>3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A*
Probab=81.80 E-value=4.8 Score=36.28 Aligned_cols=90 Identities=10% Similarity=0.124 Sum_probs=58.9
Q ss_pred CCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCch-HHHHHHHHhhC-CCCeEE-EE--echHHHHHHHHHHCCC
Q 013861 322 QMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPY-LDVIRLLRDKY-PLPIAA-YQ--VSGEYSMIKAGGALKM 396 (435)
Q Consensus 322 Qmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~Y-LDIIr~vk~~~-~lPvaa-Yq--VSGEYaMikaAa~~G~ 396 (435)
-+|..|.++++..++. ++.|+|++= +| .-|-+.+ +++|+.+|+.+ +.|+.. ++ ..|++ .++.++++|.
T Consensus 12 alD~~~~~~~~~~~~~-~~~~vd~ie---~g--~~~~~~~G~~~i~~lr~~~~~~~i~ld~~l~d~p~~-~~~~~~~aGa 84 (218)
T 3jr2_A 12 ALDQTNLTDAVAVASN-VASYVDVIE---VG--TILAFAEGMKAVSTLRHNHPNHILVCDMKTTDGGAI-LSRMAFEAGA 84 (218)
T ss_dssp EECCSSHHHHHHHHHH-HGGGCSEEE---EC--HHHHHHHTTHHHHHHHHHCTTSEEEEEEEECSCHHH-HHHHHHHHTC
T ss_pred EeCCCCHHHHHHHHHH-hcCCceEEE---eC--cHHHHhcCHHHHHHHHHhCCCCcEEEEEeecccHHH-HHHHHHhcCC
Confidence 3688999999998887 778999872 01 0111111 79999999985 677753 22 24565 5577777773
Q ss_pred -------CchhhHHHHHHHHHHHhcccEe
Q 013861 397 -------IDEQRVMMESLMCLRRAGADII 418 (435)
Q Consensus 397 -------ide~~~v~Esl~~ikRAGAd~I 418 (435)
...++.+-|.+..+++.|.+.+
T Consensus 85 d~i~vh~~~~~~~~~~~~~~~~~~g~~~~ 113 (218)
T 3jr2_A 85 DWITVSAAAHIATIAACKKVADELNGEIQ 113 (218)
T ss_dssp SEEEEETTSCHHHHHHHHHHHHHHTCEEE
T ss_pred CEEEEecCCCHHHHHHHHHHHHHhCCccc
Confidence 1113455677778888888775
No 76
>1q7z_A 5-methyltetrahydrofolate S-homocysteine methyltransferase; methionine, cobalamin, vitamin B12; 1.70A {Thermotoga maritima} SCOP: c.1.21.2 c.1.26.1 PDB: 1q7q_A 1q7m_A 1q85_A 1q8a_A 1q8j_A* 3bof_A 3bol_A
Probab=81.78 E-value=3.6 Score=43.32 Aligned_cols=164 Identities=13% Similarity=0.154 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHHHHcCCCeecCCC-CCCchHHHHHHHHHHCCCCCce------eechhhhhcccccccchhh---hcCC-
Q 013861 244 TVHQLCKQAVSQARAGADVVSPSD-MMDGRVGAIRAALDAEGFQHVS------IMSYTAKYASSFYGPFREA---LDSN- 312 (435)
Q Consensus 244 Tv~~Lak~Avs~A~AGADiVAPSD-MMDGrVgAIR~aLD~~Gf~~v~------IMSYSaKyASafYGPFRdA---~~Sa- 312 (435)
|-+.+++.+..+.++|+.+|.=.. .---.|.+|+++|+..--.... +.|+ +-.-.+.||+-. ++-+
T Consensus 250 ~p~~~a~~~~~~~~~G~~iiGGCCGTtP~hI~aia~~~~~~~p~~~~~~~~~~~~s~---~~~~~~~~~~iiGer~N~Tg 326 (566)
T 1q7z_A 250 KPHDFAVHIDSYYELGVNIFGGCCGTTPEHVKLFRKVLGNRKPLQRKKKRIFAVSSP---SKLVTFDHFVVIGERINPAG 326 (566)
T ss_dssp CHHHHHTTHHHHHHTTCSEECCCTTCCHHHHHHHHHHHCSCCCCCCCCCCCCEEECS---SCEEESSSCEEEEEEECCTT
T ss_pred CHHHHHHHHHHHHHcCCcEEccccCCCHHHHHHHHHHhcCCCCCCcccCccceecCC---ceeeccccceEEEEEecCCC
Confidence 446788999999999999996332 2224799999999543211111 1222 111122555422 2222
Q ss_pred C-CCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCch-------HHHHHHHHhhCCCCeEEEEechH
Q 013861 313 P-RFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPY-------LDVIRLLRDKYPLPIAAYQVSGE 384 (435)
Q Consensus 313 p-~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~Y-------LDIIr~vk~~~~lPvaaYqVSGE 384 (435)
| +|.|--. ..+.++|+..+..-+++|||||= |-|+... --++..+++.+++|+..= |=.
T Consensus 327 ~dsf~~~~~----~~~~~~a~~~A~~~v~~GAdiID-------Igpg~~~v~~~ee~~rvv~~i~~~~~vpisID--T~~ 393 (566)
T 1q7z_A 327 RKKLWAEMQ----KGNEEIVIKEAKTQVEKGAEVLD-------VNFGIESQIDVRYVEKIVQTLPYVSNVPLSLD--IQN 393 (566)
T ss_dssp CHHHHHHHH----TTCCHHHHHHHHHHHHTTCSEEE-------EECSSGGGSCHHHHHHHHHHHHHHTCSCEEEE--CCC
T ss_pred ChhHHHHhh----cCCHHHHHHHHHHHHHCCCCEEE-------ECCCCCCCCHHHHHHHHHHHHHhhCCceEEEe--CCC
Confidence 2 1322111 23678999999999999999999 7787653 345666677789998763 335
Q ss_pred HHHHHHHHHC--C--CCch---h-hHHHHHHHHHHHhcccEeehhcH
Q 013861 385 YSMIKAGGAL--K--MIDE---Q-RVMMESLMCLRRAGADIILTYFA 423 (435)
Q Consensus 385 YaMikaAa~~--G--~ide---~-~~v~Esl~~ikRAGAd~IiTYfA 423 (435)
...+++|.+. | +|+. + .-+-|.+.-.++.||-+|+..+-
T Consensus 394 ~~v~eaal~~~~G~~iINdis~~~~~~~~~~~~~~~~g~~vV~m~~~ 440 (566)
T 1q7z_A 394 VDLTERALRAYPGRSLFNSAKVDEEELEMKINLLKKYGGTLIVLLMG 440 (566)
T ss_dssp HHHHHHHHHHCSSCCEEEEEESCHHHHHHHHHHHHHHCCEEEEESCS
T ss_pred HHHHHHHHHhcCCCCEEEECCcchhhHHHHHHHHHHhCCeEEEEeCC
Confidence 6677777766 4 3432 2 22234555678889999986653
No 77
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=81.63 E-value=10 Score=30.32 Aligned_cols=95 Identities=15% Similarity=0.121 Sum_probs=58.0
Q ss_pred CCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhC-CCCeEEEEechHHHHHHHHHHCCCCch-----
Q 013861 326 ANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMIDE----- 399 (435)
Q Consensus 326 ~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~-~lPvaaYqVSGEYaMikaAa~~G~ide----- 399 (435)
.|..||+..... +..|+|+... --|.+.-+++++.+|+.. .+||...--..+...+..+.+.|..+.
T Consensus 48 ~~~~~a~~~l~~---~~~dlii~d~----~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~ 120 (152)
T 3eul_A 48 DDGAAALELIKA---HLPDVALLDY----RMPGMDGAQVAAAVRSYELPTRVLLISAHDEPAIVYQALQQGAAGFLLKDS 120 (152)
T ss_dssp SSHHHHHHHHHH---HCCSEEEEET----TCSSSCHHHHHHHHHHTTCSCEEEEEESCCCHHHHHHHHHTTCSEEEETTC
T ss_pred CCHHHHHHHHHh---cCCCEEEEeC----CCCCCCHHHHHHHHHhcCCCCeEEEEEccCCHHHHHHHHHcCCCEEEecCC
Confidence 367787776654 4589998221 127778899999999876 599999888888888888888887542
Q ss_pred -hhHHHHHHHHHHHhcccEeehhcHHHHHHHHhc
Q 013861 400 -QRVMMESLMCLRRAGADIILTYFALQAARCLCG 432 (435)
Q Consensus 400 -~~~v~Esl~~ikRAGAd~IiTYfA~~~a~~L~~ 432 (435)
...+.+.+..+.+-+ .|+.+.+++.|.+
T Consensus 121 ~~~~l~~~i~~~~~~~-----~~~~~~~~~~l~~ 149 (152)
T 3eul_A 121 TRTEIVKAVLDCAKGR-----DVVAPSLVGGLAG 149 (152)
T ss_dssp CHHHHHHHHHHHHHCC------------------
T ss_pred CHHHHHHHHHHHHcCC-----eeeCHHHHHHHhh
Confidence 344556665555543 4566666555443
No 78
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*
Probab=81.40 E-value=6.2 Score=36.78 Aligned_cols=54 Identities=17% Similarity=0.215 Sum_probs=38.0
Q ss_pred CCCCCCHHHHHHHHHhcccccccEEeccc-CCCcccCCCch-HHHHHHHHhhCCCCeEEEE
Q 013861 322 QMNPANYREALVEAQADESEGADILLFSV-LGSQVKPGLPY-LDVIRLLRDKYPLPIAAYQ 380 (435)
Q Consensus 322 Qmdp~N~~EAlre~~~D~~EGADilM~~~-~~~~VKPal~Y-LDIIr~vk~~~~lPvaaYq 380 (435)
-+|+.|..|+++.+ +.|||.+=+-+ =|..| |-+.| .++|+.+|+.+++|+-+--
T Consensus 9 a~D~~~l~~~i~~~----~~gad~lHvDvmDG~fv-pn~t~G~~~v~~lr~~~~~~~dvhL 64 (231)
T 3ctl_A 9 CMDLLKFKEQIEFI----DSHADYFHIDIMDGHFV-PNLTLSPFFVSQVKKLATKPLDCHL 64 (231)
T ss_dssp GSCGGGHHHHHHHH----HTTCSCEEEEEECSSSS-SCCCBCHHHHHHHHTTCCSCEEEEE
T ss_pred hCChhhHHHHHHHH----HcCCCEEEEEEEeCccC-ccchhcHHHHHHHHhccCCcEEEEE
Confidence 36788888888877 67999752222 34444 45544 8999999998888876543
No 79
>3ih1_A Methylisocitrate lyase; alpha-beta structure, TIM-barrel, center for structural GENO infectious diseases, csgid; 2.00A {Bacillus anthracis str} PDB: 3kz2_A
Probab=81.28 E-value=7.5 Score=38.16 Aligned_cols=102 Identities=16% Similarity=0.182 Sum_probs=65.7
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCc---CcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeec
Q 013861 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDE---AYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVR 234 (435)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~---A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTshGHcGIv~ 234 (435)
.+.+.++.+.+.|+..|.|=+-+.+ +| +|.- ..-+-.-...-|+++++.-++++|++=.-- +
T Consensus 105 ~v~~~v~~l~~aGaagv~iED~~~~-kr--cGh~~gk~l~~~~e~~~rI~Aa~~A~~~~~I~ARtda--~---------- 169 (305)
T 3ih1_A 105 NVARTAVEMVEAKVAAVQIEDQQLP-KK--CGHLNGKKLVTTEELVQKIKAIKEVAPSLYIVARTDA--R---------- 169 (305)
T ss_dssp HHHHHHHHHHHTTCSEEEEECBCSS-CC--TTCTTCCCBCCHHHHHHHHHHHHHHCTTSEEEEEECC--H----------
T ss_pred HHHHHHHHHHHhCCcEEEECCCCCC-cc--cCCCCCCcccCHHHHHHHHHHHHHcCCCeEEEEeecc--c----------
Confidence 4788899999999999999665322 12 2221 111112234567777788677777642211 0
Q ss_pred CCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC-chHHHHHHHH
Q 013861 235 EDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMD-GRVGAIRAAL 280 (435)
Q Consensus 235 e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMMD-GrVgAIR~aL 280 (435)
..+.++...+-|..|++||||+|-+-..-+ -.+.+|.+++
T Consensus 170 ------~~~g~~~ai~Ra~ay~eAGAD~i~~e~~~~~~~~~~i~~~~ 210 (305)
T 3ih1_A 170 ------GVEGLDEAIERANAYVKAGADAIFPEALQSEEEFRLFNSKV 210 (305)
T ss_dssp ------HHHCHHHHHHHHHHHHHHTCSEEEETTCCSHHHHHHHHHHS
T ss_pred ------cccCHHHHHHHHHHHHHcCCCEEEEcCCCCHHHHHHHHHHc
Confidence 012377778889999999999999887766 5566666665
No 80
>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*
Probab=81.10 E-value=2.8 Score=40.02 Aligned_cols=58 Identities=14% Similarity=0.132 Sum_probs=33.2
Q ss_pred hHHHHHHHHhhCCCCeEE--E-E-ec--hHHHHHHHHHHCCCCc----hh---hHHHHHHHHHHHhcccEee
Q 013861 361 YLDVIRLLRDKYPLPIAA--Y-Q-VS--GEYSMIKAGGALKMID----EQ---RVMMESLMCLRRAGADIIL 419 (435)
Q Consensus 361 YLDIIr~vk~~~~lPvaa--Y-q-VS--GEYaMikaAa~~G~id----e~---~~v~Esl~~ikRAGAd~Ii 419 (435)
++++|+++|+..++|+.. | + |- |.-..++.+++.|. | .+ +-..|....+++.|-+.|.
T Consensus 79 ~~~~v~~ir~~~~~Pii~m~y~n~v~~~g~~~f~~~~~~aG~-dGviv~Dl~~ee~~~~~~~~~~~gl~~i~ 149 (271)
T 1ujp_A 79 ALELVREVRALTEKPLFLMTYLNPVLAWGPERFFGLFKQAGA-TGVILPDLPPDEDPGLVRLAQEIGLETVF 149 (271)
T ss_dssp HHHHHHHHHHHCCSCEEEECCHHHHHHHCHHHHHHHHHHHTC-CEEECTTCCGGGCHHHHHHHHHHTCEEEC
T ss_pred HHHHHHHHHhcCCCCEEEEecCcHHHHhhHHHHHHHHHHcCC-CEEEecCCCHHHHHHHHHHHHHcCCceEE
Confidence 368999999998999998 3 3 21 33334444454443 2 10 1134455556666665443
No 81
>1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A*
Probab=80.71 E-value=2.6 Score=37.68 Aligned_cols=60 Identities=27% Similarity=0.462 Sum_probs=36.9
Q ss_pred cccccEEeccc-CCCcccCCC--chHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhccc
Q 013861 340 SEGADILLFSV-LGSQVKPGL--PYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGAD 416 (435)
Q Consensus 340 ~EGADilM~~~-~~~~VKPal--~YLDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G~ide~~~v~Esl~~ikRAGAd 416 (435)
+.|||+|+++. ++.+.||+. .-++.++++++.+++|+.+ .|-|+.+++ ..+.++|||
T Consensus 128 ~~gaD~i~~~~~f~~~~~~g~~~~~~~~l~~~~~~~~~pvia---------------~GGI~~~nv-----~~~~~~Ga~ 187 (221)
T 1yad_A 128 KEDADYVLFGHVFETDCKKGLEGRGVSLLSDIKQRISIPVIA---------------IGGMTPDRL-----RDVKQAGAD 187 (221)
T ss_dssp HTTCSEEEEECCC----------CHHHHHHHHHHHCCSCEEE---------------ESSCCGGGH-----HHHHHTTCS
T ss_pred hCCCCEEEECCccccCCCCCCCCCCHHHHHHHHHhCCCCEEE---------------ECCCCHHHH-----HHHHHcCCC
Confidence 57999998653 456677652 2368899999888999864 566676533 344558999
Q ss_pred Eee
Q 013861 417 IIL 419 (435)
Q Consensus 417 ~Ii 419 (435)
.|.
T Consensus 188 gv~ 190 (221)
T 1yad_A 188 GIA 190 (221)
T ss_dssp EEE
T ss_pred EEE
Confidence 754
No 82
>3vav_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics, seattle structural genomics center for infectious disease; 1.80A {Burkholderia thailandensis} SCOP: c.1.12.8 PDB: 3ez4_A
Probab=80.20 E-value=12 Score=36.39 Aligned_cols=165 Identities=18% Similarity=0.215 Sum_probs=99.6
Q ss_pred CCC-ceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCC
Q 013861 147 MPG-CYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYS 225 (435)
Q Consensus 147 MPG-v~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YT 225 (435)
||- =| -+.. .+++.+.++.+.|...|-|=+- . .....|+.|.+.- +=++.-+-|-|-+
T Consensus 97 ~pfgsY-~s~~-~a~~~a~rl~kaGa~aVklEdg----------~-------~~~~~i~~l~~~G--Ipv~gHlgltPq~ 155 (275)
T 3vav_A 97 LPFGTY-GTPA-DAFASAVKLMRAGAQMVKFEGG----------E-------WLAETVRFLVERA--VPVCAHVGLTPQS 155 (275)
T ss_dssp CCTTSC-SSHH-HHHHHHHHHHHTTCSEEEEECC----------G-------GGHHHHHHHHHTT--CCEEEEEESCGGG
T ss_pred cCCCCC-CCHH-HHHHHHHHHHHcCCCEEEECCc----------h-------hHHHHHHHHHHCC--CCEEEecCCCceE
Confidence 663 46 5554 4777777777778887776321 0 2355777776642 2233333333332
Q ss_pred CCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCCCceeechh-hhhccccccc
Q 013861 226 SDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYT-AKYASSFYGP 304 (435)
Q Consensus 226 shGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMMDGrVgAIR~aLD~~Gf~~v~IMSYS-aKyASafYGP 304 (435)
.+--.|.. --| ..|+..+.+.+.|..+++||||+|=+..+-+--...|.++| +++++.-. ..+++.=.=-
T Consensus 156 ~~~~gg~~-vqg--rt~~~a~~~i~rA~a~~eAGA~~ivlE~vp~~~a~~It~~l------~iP~igIGaG~~cdgQvLv 226 (275)
T 3vav_A 156 VHAFGGFK-VQG--KTEAGAAQLLRDARAVEEAGAQLIVLEAVPTLVAAEVTREL------SIPTIGIGAGAECSGQVLV 226 (275)
T ss_dssp HHHHC----CCC--CSHHHHHHHHHHHHHHHHHTCSEEEEESCCHHHHHHHHHHC------SSCEEEESSCSCSSEEEEC
T ss_pred EeccCCeE-EEc--CCHHHHHHHHHHHHHHHHcCCCEEEecCCCHHHHHHHHHhC------CCCEEEEccCCCCCceeee
Confidence 22111211 123 35777899999999999999999988887665556666665 35555543 3455444444
Q ss_pred chhhhcC----CCCCCCccccCCCCCCHHHHHHHHHhcccccc
Q 013861 305 FREALDS----NPRFGDKKTYQMNPANYREALVEAQADESEGA 343 (435)
Q Consensus 305 FRdA~~S----ap~fgDRktYQmdp~N~~EAlre~~~D~~EGA 343 (435)
+-|.++- .|+| -|.|----....+|+++-..|+++|.
T Consensus 227 ~~D~lG~~~~~~pkf--~k~y~~~~~~~~~a~~~y~~~V~~~~ 267 (275)
T 3vav_A 227 LHDMLGVFPGKRPRF--VKDFMQGQPSIFAAVEAYVRAVKDGS 267 (275)
T ss_dssp HHHHTTCSCSCCCTT--CCCCCTTCSSHHHHHHHHHHHHHHTC
T ss_pred HhhhcCCCCCCCCCc--chhhhhhHHHHHHHHHHHHHHHhcCC
Confidence 5566653 4666 35564444457889998888888874
No 83
>1vqt_A Orotidine 5'-phosphate decarboxylase; TM0332, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.00A {Thermotoga maritima} SCOP: c.1.2.3
Probab=80.20 E-value=2.1 Score=39.28 Aligned_cols=151 Identities=19% Similarity=0.155 Sum_probs=81.0
Q ss_pred cCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCC
Q 013861 189 GDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDM 268 (435)
Q Consensus 189 Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTshGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDM 268 (435)
|.+-|- .|+ ..++.||+. +..|+.|+=+ + |--.|+...++.+ +++|||+|.=+-.
T Consensus 40 g~~l~~-~G~--~~v~~l~~~--~~~v~lD~K~---------------~--DI~nT~~~~v~~~---~~~GaD~vTvh~~ 94 (213)
T 1vqt_A 40 GHNLAI-HGK--KIFDELAKR--NLKIILDLKF---------------C--DIPSTVERSIKSW---DHPAIIGFTVHSC 94 (213)
T ss_dssp CHHHHT-TCT--HHHHHHHTT--TCEEEEEEEE---------------C--SCHHHHHHHHHHH---CCTTEEEEEEEGG
T ss_pred CHHHHh-hCH--HHHHHHHHC--CCCEEEEeec---------------c--cCchHHHHHHHHH---HHCCCCEEEEecc
Confidence 444455 565 468888875 6788888754 2 3345666555544 4899999965544
Q ss_pred CCchHHHHHHHHHHCCCCCceeechhhhhcccccccchhhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEec
Q 013861 269 MDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLF 348 (435)
Q Consensus 269 MDGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~ 348 (435)
+.- ..|+.+++...-..+.+.-- .+..+++ | +...+.+.+ .+-|+| ++
T Consensus 95 ~G~--~~l~~~~~~~~~~~~~V~~l-----ts~~~~l----------------~------~~v~~~a~~-~e~G~d-vV- 142 (213)
T 1vqt_A 95 AGY--ESVERALSATDKHVFVVVKL-----TSMEGSL----------------E------DYMDRIEKL-NKLGCD-FV- 142 (213)
T ss_dssp GCH--HHHHHHHHHCSSEEEEECCC-----TTSCCCH----------------H------HHHHHHHHH-HHHTCE-EE-
T ss_pred CCH--HHHHHHHHhcCCCeEEEEEe-----CCCCHHH----------------H------HHHHHHHHH-hcCCCE-EE-
Confidence 432 24555555543001111100 0111111 1 555566666 777999 44
Q ss_pred ccCCCcccCCCchHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEee
Q 013861 349 SVLGSQVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIIL 419 (435)
Q Consensus 349 ~~~~~~VKPal~YLDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G~ide~~~v~Esl~~ikRAGAd~Ii 419 (435)
..+ +-++.+|+..+-| .|.|=+-.- .+-=|.++++ +... .+||||+|+
T Consensus 143 -------~~~----~~~~~ir~~~~~~----~v~pGI~~~-----~~~~dq~rv~--t~~~-i~aGad~iV 190 (213)
T 1vqt_A 143 -------LPG----PWAKALREKIKGK----ILVPGIRME-----VKADDQKDVV--TLEE-MKGIANFAV 190 (213)
T ss_dssp -------CCH----HHHHHHTTTCCSC----EEECCBC--------------CCB--CHHH-HTTTCSEEE
T ss_pred -------EcH----HHHHHHHHHCCCC----EEECCCCCC-----CCccchhhcC--CHHH-HHCCCCEEE
Confidence 322 6778888877655 565533211 1101333332 6667 799999987
No 84
>1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1
Probab=80.06 E-value=4.6 Score=38.61 Aligned_cols=77 Identities=18% Similarity=0.297 Sum_probs=52.7
Q ss_pred HHHHHHHHHhcccccccEEecccCCCcccCCCch-------HHHHHHHHhhC---------CCCeEEEEechHHHHHHHH
Q 013861 328 YREALVEAQADESEGADILLFSVLGSQVKPGLPY-------LDVIRLLRDKY---------PLPIAAYQVSGEYSMIKAG 391 (435)
Q Consensus 328 ~~EAlre~~~D~~EGADilM~~~~~~~VKPal~Y-------LDIIr~vk~~~---------~lPvaaYqVSGEYaMikaA 391 (435)
.-+.+.++..-+++|+|.|-.. ++|-..++..+ .+||+.+|+.. ++||.. .+|++
T Consensus 151 ~~~~~~~aa~~~~~g~d~iein-~~sP~~~g~~~~~~~~~~~~il~~vr~~~~~~~~~~g~~~Pv~v-Ki~~~------- 221 (336)
T 1f76_A 151 GKDDYLICMEKIYAYAGYIAIN-ISSPNTPGLRTLQYGEALDDLLTAIKNKQNDLQAMHHKYVPIAV-KIAPD------- 221 (336)
T ss_dssp THHHHHHHHHHHGGGCSEEEEE-CCCSSSTTGGGGGSHHHHHHHHHHHHHHHHHHHHHHTSCCCEEE-ECCSC-------
T ss_pred cHHHHHHHHHHHhccCCEEEEE-ccCCCCCCcccccCHHHHHHHHHHHHHHHHhhhhcccccCceEE-EecCC-------
Confidence 3455666665566799998743 44545554444 48999999887 899987 56653
Q ss_pred HHCCCCchhhHHHHHHHHHHHhcccEee
Q 013861 392 GALKMIDEQRVMMESLMCLRRAGADIIL 419 (435)
Q Consensus 392 a~~G~ide~~~v~Esl~~ikRAGAd~Ii 419 (435)
| +.+ -+.|....+..+|+|.|+
T Consensus 222 ----~-~~~-~~~~~a~~l~~~Gvd~i~ 243 (336)
T 1f76_A 222 ----L-SEE-ELIQVADSLVRHNIDGVI 243 (336)
T ss_dssp ----C-CHH-HHHHHHHHHHHTTCSEEE
T ss_pred ----C-CHH-HHHHHHHHHHHcCCcEEE
Confidence 3 333 256777888899999886
No 85
>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A
Probab=80.01 E-value=2.4 Score=38.49 Aligned_cols=76 Identities=25% Similarity=0.328 Sum_probs=47.4
Q ss_pred ccCCCCCCHHHHHHHHHhcccc---cccEEec-ccC---CCcccCCCchHHHHHHHHhhC-CCCeEEEEechHHHHHHHH
Q 013861 320 TYQMNPANYREALVEAQADESE---GADILLF-SVL---GSQVKPGLPYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAG 391 (435)
Q Consensus 320 tYQmdp~N~~EAlre~~~D~~E---GADilM~-~~~---~~~VKPal~YLDIIr~vk~~~-~lPvaaYqVSGEYaMikaA 391 (435)
..-++|.+..|.+++. .+ |+|+|.+ ++. |.| |-.-.-++-|+++|+.. ++|+.+
T Consensus 117 gv~~~p~t~~e~~~~~----~~~~~~~d~vl~~sv~pg~~g~-~~~~~~l~~i~~~~~~~~~~pi~v------------- 178 (228)
T 1h1y_A 117 GVSLRPGTPVEEVFPL----VEAENPVELVLVMTVEPGFGGQ-KFMPEMMEKVRALRKKYPSLDIEV------------- 178 (228)
T ss_dssp EEEECTTSCGGGGHHH----HHSSSCCSEEEEESSCTTCSSC-CCCGGGHHHHHHHHHHCTTSEEEE-------------
T ss_pred EEEEeCCCCHHHHHHH----HhcCCCCCEEEEEeecCCCCcc-cCCHHHHHHHHHHHHhcCCCCEEE-------------
Confidence 3445676666655433 34 8999985 221 122 22223488899999988 788753
Q ss_pred HHCCCCchhhHHHHHHHHHHHhcccEeeh
Q 013861 392 GALKMIDEQRVMMESLMCLRRAGADIILT 420 (435)
Q Consensus 392 a~~G~ide~~~v~Esl~~ikRAGAd~IiT 420 (435)
.|-|+.++ +..+.++|||+|+.
T Consensus 179 --~GGI~~~n-----i~~~~~aGaD~vvv 200 (228)
T 1h1y_A 179 --DGGLGPST-----IDVAASAGANCIVA 200 (228)
T ss_dssp --ESSCSTTT-----HHHHHHHTCCEEEE
T ss_pred --ECCcCHHH-----HHHHHHcCCCEEEE
Confidence 56677653 33456679999874
No 86
>1zlp_A PSR132, petal death protein; TIM-barrel, helix swapping,2-ethyl-3-methylmalate lyase, 2-P methylmalate lyase, lyase/PEP mutase superfamily; 2.70A {Dianthus caryophyllus}
Probab=79.87 E-value=9.8 Score=37.59 Aligned_cols=119 Identities=13% Similarity=0.017 Sum_probs=73.1
Q ss_pred CCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCC-cccCcCcCCCCCHHHHHHHHHHHC--CCeEEEeeecccC
Q 013861 147 MPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKS-PTGDEAYNDNGLVPRTIWLLKDRY--PDLVIYTDVALDP 223 (435)
Q Consensus 147 MPGv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd-~~Gs~A~~~~g~v~raIr~iK~~~--Pdl~IitDVcLc~ 223 (435)
||.=|- +.. .+.+.++++.+.|+..|.|=+-+.. .|. -.|....-|-.-...-|+++++.. ++.+|++=.- .
T Consensus 108 ~d~Gyg-~~~-~v~~tv~~l~~aGaagv~iED~~~~-k~cgH~~gk~L~p~~e~~~rI~Aa~~A~~~~~~~I~ARtd--a 182 (318)
T 1zlp_A 108 GDTGGG-GPL-NVQRFIRELISAGAKGVFLEDQVWP-KKCGHMRGKAVVPAEEHALKIAAAREAIGDSDFFLVARTD--A 182 (318)
T ss_dssp CTTCSS-SHH-HHHHHHHHHHHTTCCEEEEECBCSS-CCCSSSSCCCBCCHHHHHHHHHHHHHHHTTSCCEEEEEEC--T
T ss_pred CCCCCC-CHH-HHHHHHHHHHHcCCcEEEECCCCCC-ccccCCCCCccCCHHHHHHHHHHHHHhcccCCcEEEEeeH--H
Confidence 443465 554 5899999999999999998554311 111 011111222223344566676664 4555554221 1
Q ss_pred CCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC-chHHHHHHHHHHCCCCCceeec
Q 013861 224 YSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMD-GRVGAIRAALDAEGFQHVSIMS 292 (435)
Q Consensus 224 YTshGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMMD-GrVgAIR~aLD~~Gf~~v~IMS 292 (435)
+ -.+-++.+.+-|..+++||||+|-+-.+-| -.+.+|.++|+ +++|.
T Consensus 183 ~----------------a~~gl~~ai~Ra~Ay~eAGAd~i~~e~~~~~e~~~~i~~~l~------~P~la 230 (318)
T 1zlp_A 183 R----------------APHGLEEGIRRANLYKEAGADATFVEAPANVDELKEVSAKTK------GLRIA 230 (318)
T ss_dssp H----------------HHHHHHHHHHHHHHHHHTTCSEEEECCCCSHHHHHHHHHHSC------SEEEE
T ss_pred h----------------hhcCHHHHHHHHHHHHHcCCCEEEEcCCCCHHHHHHHHHhcC------CCEEE
Confidence 1 023467888899999999999998887776 66777777763 67754
No 87
>1vyr_A Pentaerythritol tetranitrate reductase; oxidoreductase, flavoenzyme, explosive degradation, steroid binding; HET: FMN TNF; 0.9A {Enterobacter cloacae} SCOP: c.1.4.1 PDB: 1gvq_A* 1gvr_A* 1gvs_A* 1h50_A* 1h51_A* 1h60_A* 1h61_A* 1h62_A* 1h63_A* 1gvo_A* 2aba_A* 3f03_K* 3kft_A* 3p7y_A* 3p80_A* 3p81_A* 3p62_A* 3p8i_A* 2abb_A* 3p67_A* ...
Probab=79.34 E-value=50 Score=32.42 Aligned_cols=48 Identities=15% Similarity=0.050 Sum_probs=29.8
Q ss_pred HHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhCCCCeEE
Q 013861 330 EALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAA 378 (435)
Q Consensus 330 EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~~lPvaa 378 (435)
+++.-+..=.+.|+|+|-.+.-+..-.|.. -++.++.+|+.+++||++
T Consensus 252 ~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~-~~~~~~~v~~~~~iPvi~ 299 (364)
T 1vyr_A 252 DALYLIEELAKRGIAYLHMSETDLAGGKPY-SEAFRQKVRERFHGVIIG 299 (364)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCBTTBCCCC-CHHHHHHHHHHCCSEEEE
T ss_pred HHHHHHHHHHHhCCCEEEEecCcccCCCcc-cHHHHHHHHHHCCCCEEE
Confidence 443333332357999998543211112332 378999999999999875
No 88
>2vef_A Dihydropteroate synthase; antibiotic resistance, transferase, folate biosynthesis; 1.8A {Streptococcus pneumoniae} PDB: 2veg_A*
Probab=78.84 E-value=2.5 Score=41.56 Aligned_cols=103 Identities=22% Similarity=0.388 Sum_probs=62.6
Q ss_pred hcCCC-CCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCch----------HHHHHHHHhhCCCCeE
Q 013861 309 LDSNP-RFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPY----------LDVIRLLRDKYPLPIA 377 (435)
Q Consensus 309 ~~Sap-~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~Y----------LDIIr~vk~~~~lPva 377 (435)
++-+| +|-|--.|. +.+.|+..++.=+++|||||= +=|.--.|+... +-+|+.+++.+++||.
T Consensus 16 lNvTPDSFsdgg~~~----~~~~a~~~a~~~v~~GAdIID--IGgeSTrPGa~~v~~~eE~~Rv~pvI~~l~~~~~vpiS 89 (314)
T 2vef_A 16 INVTPDSFSDGGQFF----ALEQALQQARKLIAEGASMLD--IGGESTRPGSSYVEIEEEIQRVVPVIKAIRKESDVLIS 89 (314)
T ss_dssp EECCC---------C----HHHHHHHHHHHHHHTTCSEEE--EECCC-----CHHHHHHHHHHHHHHHHHHHHHCCCEEE
T ss_pred EeCCCCCCCCCCCCC----CHHHHHHHHHHHHHCCCCEEE--ECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCceEE
Confidence 45566 477766664 678999999999999999997 223234677544 5678888888899986
Q ss_pred EEEechHHHHHHHHHHCC--CCch------hhHHHHHHHHHHHhcccEeehhc
Q 013861 378 AYQVSGEYSMIKAGGALK--MIDE------QRVMMESLMCLRRAGADIILTYF 422 (435)
Q Consensus 378 aYqVSGEYaMikaAa~~G--~ide------~~~v~Esl~~ikRAGAd~IiTYf 422 (435)
. =|=.-..+++|.++| +|+. +.-+++ -.++.||-+|+...
T Consensus 90 I--DT~~~~Va~aAl~aGa~iINDVsg~~~d~~m~~---v~a~~~~~vvlmh~ 137 (314)
T 2vef_A 90 I--DTWKSQVAEAALAAGADLVNDITGLMGDEKMPH---VVAEARAQVVIMFN 137 (314)
T ss_dssp E--ECSCHHHHHHHHHTTCCEEEETTTTCSCTTHHH---HHHHHTCEEEEECC
T ss_pred E--eCCCHHHHHHHHHcCCCEEEECCCCCCChHHHH---HHHHcCCCEEEEec
Confidence 5 234456788888877 3331 123333 45788999999643
No 89
>2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A
Probab=78.82 E-value=4.5 Score=37.18 Aligned_cols=71 Identities=18% Similarity=0.153 Sum_probs=48.1
Q ss_pred CCCCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCch--hh
Q 013861 324 NPANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDE--QR 401 (435)
Q Consensus 324 dp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G~ide--~~ 401 (435)
++.+..|+.+.+ .+.|||+|- +.|. .=++.++++++..++||.+- |-++. .+
T Consensus 164 ~~~~~~~~a~~a---~~~Gad~i~-------~~~~-~~~~~l~~i~~~~~ipvva~---------------GGi~~~~~~ 217 (273)
T 2qjg_A 164 DPELVAHAARLG---AELGADIVK-------TSYT-GDIDSFRDVVKGCPAPVVVA---------------GGPKTNTDE 217 (273)
T ss_dssp CHHHHHHHHHHH---HHTTCSEEE-------ECCC-SSHHHHHHHHHHCSSCEEEE---------------CCSCCSSHH
T ss_pred CHhHHHHHHHHH---HHcCCCEEE-------ECCC-CCHHHHHHHHHhCCCCEEEE---------------eCCCCCCHH
Confidence 343444443433 358999999 6553 34889999999999999872 33442 34
Q ss_pred HHHHHHHHHHHhcccEeeh
Q 013861 402 VMMESLMCLRRAGADIILT 420 (435)
Q Consensus 402 ~v~Esl~~ikRAGAd~IiT 420 (435)
-++|.+..+.++||+.|..
T Consensus 218 ~~~~~~~~~~~~Ga~gv~v 236 (273)
T 2qjg_A 218 EFLQMIKDAMEAGAAGVAV 236 (273)
T ss_dssp HHHHHHHHHHHHTCSEEEC
T ss_pred HHHHHHHHHHHcCCcEEEe
Confidence 5677777778899997753
No 90
>1aj0_A DHPS, dihydropteroate synthase; antibiotic, resistance, transferase, folate, biosynthesis; HET: PH2 SAN; 2.00A {Escherichia coli} SCOP: c.1.21.1 PDB: 1aj2_A* 1ajz_A 3tyz_A* 3tyu_A* 3tzf_A* 3tzn_A
Probab=78.68 E-value=3.5 Score=39.85 Aligned_cols=106 Identities=21% Similarity=0.319 Sum_probs=70.4
Q ss_pred hcCCC-CCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCc----------hHHHHHHHHhhCCCCeE
Q 013861 309 LDSNP-RFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLP----------YLDVIRLLRDKYPLPIA 377 (435)
Q Consensus 309 ~~Sap-~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~----------YLDIIr~vk~~~~lPva 377 (435)
+.-+| +|.|.-.| .+.++|+..++.-+++|||||= +-|.--.|+-. .+.+|+.+++.+++||.
T Consensus 21 lN~TpdSFsdgg~~----~~~~~a~~~a~~~v~~GAdiID--IGgestrPga~~v~~~eE~~rv~pvi~~l~~~~~~piS 94 (282)
T 1aj0_A 21 LNVTPDSFSDGGTH----NSLIDAVKHANLMINAGATIID--VGGESTRPGAAEVSVEEELQRVIPVVEAIAQRFEVWIS 94 (282)
T ss_dssp EECCTTTSCCCCCC----THHHHHHHHHHHHHHHTCSEEE--EESSCCSTTCCCCCHHHHHHHHHHHHHHHHHHCCCEEE
T ss_pred EeCCCCcccccccc----CCHHHHHHHHHHHHHCCCCEEE--ECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhhcCCeEE
Confidence 44456 46564444 3678999999999999999997 22323467633 37788899988899987
Q ss_pred EEEechHHHHHHHHHHCCC--Cchhh--HHHHHHHHHHHhcccEeehhc
Q 013861 378 AYQVSGEYSMIKAGGALKM--IDEQR--VMMESLMCLRRAGADIILTYF 422 (435)
Q Consensus 378 aYqVSGEYaMikaAa~~G~--ide~~--~v~Esl~~ikRAGAd~IiTYf 422 (435)
.= |=....+++|.++|. |+.=. ..-|.+.-+++.|+-+|+...
T Consensus 95 ID--T~~~~va~aAl~aGa~iINdvsg~~d~~~~~~~a~~~~~vVlmh~ 141 (282)
T 1aj0_A 95 VD--TSKPEVIRESAKVGAHIINDIRSLSEPGALEAAAETGLPVCLMHM 141 (282)
T ss_dssp EE--CCCHHHHHHHHHTTCCEEEETTTTCSTTHHHHHHHHTCCEEEECC
T ss_pred Ee--CCCHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHhCCeEEEEcc
Confidence 52 334567777777763 22100 112445556788999999775
No 91
>3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A*
Probab=78.68 E-value=12 Score=36.39 Aligned_cols=96 Identities=16% Similarity=0.225 Sum_probs=63.1
Q ss_pred hHHHHHHHHHHcCCCeEEEeecC---------C--CCCCCcccCcCcCCCCCHHHHHHHHHHHCC-CeEEEeeecccCCC
Q 013861 158 GLVQEVAKARDVGVNSVVLFPKV---------P--DALKSPTGDEAYNDNGLVPRTIWLLKDRYP-DLVIYTDVALDPYS 225 (435)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi---------~--~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~P-dl~IitDVcLc~YT 225 (435)
...+-++.+.+.|...|-|-+-= | +...|+.|-.--|.--++...|+.+++.++ |..|...+..+.|.
T Consensus 153 ~f~~aA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVR~avG~d~pV~vRls~~~~~ 232 (349)
T 3hgj_A 153 AFVEGARRALRAGFQVIELHMAHGYLLSSFLSPLSNQRTDAYGGSLENRMRFPLQVAQAVREVVPRELPLFVRVSATDWG 232 (349)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHSCTTSCEEEEEESCCCS
T ss_pred HHHHHHHHHHHcCCCEEEECCccchHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHHHHHHHhcCCceEEEEecccccc
Confidence 35556667889999999997632 2 223566665433333456778999999986 77788888777663
Q ss_pred CCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCC
Q 013861 226 SDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSD 267 (435)
Q Consensus 226 shGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSD 267 (435)
. +| .+-++ ..+.|-.+.++|+|.|.-|.
T Consensus 233 ~---------~g-~~~~~----~~~la~~L~~~Gvd~i~vs~ 260 (349)
T 3hgj_A 233 E---------GG-WSLED----TLAFARRLKELGVDLLDCSS 260 (349)
T ss_dssp T---------TS-CCHHH----HHHHHHHHHHTTCCEEEEEC
T ss_pred C---------CC-CCHHH----HHHHHHHHHHcCCCEEEEec
Confidence 2 12 22233 34455566789999998763
No 92
>3ixl_A Amdase, arylmalonate decarboxylase; enantioselective decarboxylation, lyase; HET: CME PAC; 1.45A {Bordetella bronchiseptica} PDB: 3ixm_A 2vlb_A 3dg9_A 3ip8_A* 3dtv_A* 3eis_A*
Probab=78.62 E-value=4.5 Score=37.55 Aligned_cols=123 Identities=21% Similarity=0.253 Sum_probs=75.3
Q ss_pred HHHHHHHHHHcCCCeecCCC----CCCc---------------------hHHHHHHHHHHCCCCCceeechhhhhccccc
Q 013861 248 LCKQAVSQARAGADVVSPSD----MMDG---------------------RVGAIRAALDAEGFQHVSIMSYTAKYASSFY 302 (435)
Q Consensus 248 Lak~Avs~A~AGADiVAPSD----MMDG---------------------rVgAIR~aLD~~Gf~~v~IMSYSaKyASafY 302 (435)
|.+.|-.+..+|+|+|+=+. |.-| -+.++.++|...|..+|+|++=-.+--+.+|
T Consensus 55 l~~aa~~L~~ag~d~i~~aCtsas~~~G~~~~~~~~~~l~~~~~iPv~~~~~A~~~al~~~g~~rvglltpy~~~~~~~~ 134 (240)
T 3ixl_A 55 VVDHARRLQKQGAAVVSLMCTSLSFYRGAAFNAALTVAMREATGLPCTTMSTAVLNGLRALGVRRVALATAYIDDVNERL 134 (240)
T ss_dssp HHHHHHHHHHTTEEEEEECCHHHHHTTCHHHHHHHHHHHHHHHSSCEEEHHHHHHHHHHHTTCSEEEEEESSCHHHHHHH
T ss_pred HHHHHHHhccCCCCEEEECCcHHHHhcccchHHHHHHHHHhccCCCEECHHHHHHHHHHHhCCCEEEEEeCChHHHHHHH
Confidence 46778889999999998773 5443 3578888999999999999975333333344
Q ss_pred ccchhhhcC---CC-CCC--C-ccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhCCCC
Q 013861 303 GPFREALDS---NP-RFG--D-KKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLP 375 (435)
Q Consensus 303 GPFRdA~~S---ap-~fg--D-RktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~~lP 375 (435)
--|=++.|= .| .+| + -.--++++....++++++. ..++|||.|+.+. =.++.+++|..+.+.+++|
T Consensus 135 ~~~l~~~Giev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~adaivL~C------T~l~~l~~i~~le~~lg~P 207 (240)
T 3ixl_A 135 AAFLAEESLVPTGCRSLGITGVEAMARVDTATLVDLCVRAF-EAAPDSDGILLSS------GGLLTLDAIPEVERRLGVP 207 (240)
T ss_dssp HHHHHHTTCEEEEEEECCCCCHHHHHTCCHHHHHHHHHHHH-HTSTTCSEEEEEC------TTSCCTTHHHHHHHHHSSC
T ss_pred HHHHHHCCCEEeccccCCCCCcchhhcCCHHHHHHHHHHHh-hcCCCCCEEEEeC------CCCchhhhHHHHHHHhCCC
Confidence 222111111 01 111 1 1112344433333333311 1367999999332 3467788999999999999
Q ss_pred eE
Q 013861 376 IA 377 (435)
Q Consensus 376 va 377 (435)
|.
T Consensus 208 Vi 209 (240)
T 3ixl_A 208 VV 209 (240)
T ss_dssp EE
T ss_pred EE
Confidence 94
No 93
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=78.48 E-value=8.7 Score=29.63 Aligned_cols=66 Identities=21% Similarity=0.264 Sum_probs=45.0
Q ss_pred CCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCc
Q 013861 326 ANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMID 398 (435)
Q Consensus 326 ~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G~id 398 (435)
.|..||+..... ...|+|+... -=|++.=+++++.+|+..++|+...--.++......+.+.|..|
T Consensus 33 ~~~~~al~~~~~---~~~dlii~D~----~~p~~~g~~~~~~lr~~~~~~ii~~t~~~~~~~~~~~~~~ga~~ 98 (120)
T 3f6p_A 33 HDGNEAVEMVEE---LQPDLILLDI----MLPNKDGVEVCREVRKKYDMPIIMLTAKDSEIDKVIGLEIGADD 98 (120)
T ss_dssp SSHHHHHHHHHT---TCCSEEEEET----TSTTTHHHHHHHHHHTTCCSCEEEEEESSCHHHHHHHHHTTCCE
T ss_pred CCHHHHHHHHhh---CCCCEEEEeC----CCCCCCHHHHHHHHHhcCCCCEEEEECCCChHHHHHHHhCCcce
Confidence 366777776643 4589998211 12666778999999998899999887666655555555555543
No 94
>1tx2_A DHPS, dihydropteroate synthase; folate biosynthesis, pterine, MA transferase; HET: 680; 1.83A {Bacillus anthracis} SCOP: c.1.21.1 PDB: 1tww_A* 1twz_A* 1tx0_A* 1tws_A* 3h21_A* 3h22_A* 3h23_A* 3h24_A* 3h26_A* 3h2a_A* 3h2c_A* 3h2e_A* 3h2f_A* 3h2m_A* 3h2n_A* 3h2o_A* 3tya_A* 3tyb_A* 3tyc_A* 3tyd_A* ...
Probab=77.27 E-value=6.5 Score=38.39 Aligned_cols=106 Identities=22% Similarity=0.322 Sum_probs=67.8
Q ss_pred hcCCC-CCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCc----------hHHHHHHHHhhCCCCeE
Q 013861 309 LDSNP-RFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLP----------YLDVIRLLRDKYPLPIA 377 (435)
Q Consensus 309 ~~Sap-~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~----------YLDIIr~vk~~~~lPva 377 (435)
++-+| +|-|--.|+ +.++|+..++.-+++|||||= +-|.--.|+.. ++.+|+.+++.+++||.
T Consensus 46 lNvTPDSFsdgg~~~----~~~~a~~~a~~~v~~GAdiID--IGgeStrPga~~v~~~eE~~RvvpvI~~l~~~~~vpiS 119 (297)
T 1tx2_A 46 LNVTPDSFSDGGSYN----EVDAAVRHAKEMRDEGAHIID--IGGESTRPGFAKVSVEEEIKRVVPMIQAVSKEVKLPIS 119 (297)
T ss_dssp CCCCCCTTCSSCBHH----HHHHHHHHHHHHHHTTCSEEE--EESCC----CCCCCHHHHHHHHHHHHHHHHHHSCSCEE
T ss_pred EeCCCCccccCCccC----CHHHHHHHHHHHHHcCCCEEE--ECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcCCceEE
Confidence 45566 576655553 678999999999999999998 22222346633 58888999998899987
Q ss_pred EEEechHHHHHHHHHHCC--CCch---hhHHHHHHHHHHHhcccEeehhc
Q 013861 378 AYQVSGEYSMIKAGGALK--MIDE---QRVMMESLMCLRRAGADIILTYF 422 (435)
Q Consensus 378 aYqVSGEYaMikaAa~~G--~ide---~~~v~Esl~~ikRAGAd~IiTYf 422 (435)
.=-- .-..+++|.++| +|+. .+..-|.+.-+++.|+-+|+...
T Consensus 120 IDT~--~~~V~~aAl~aGa~iINdvsg~~~d~~m~~~aa~~g~~vVlmh~ 167 (297)
T 1tx2_A 120 IDTY--KAEVAKQAIEAGAHIINDIWGAKAEPKIAEVAAHYDVPIILMHN 167 (297)
T ss_dssp EECS--CHHHHHHHHHHTCCEEEETTTTSSCTHHHHHHHHHTCCEEEECC
T ss_pred EeCC--CHHHHHHHHHcCCCEEEECCCCCCCHHHHHHHHHhCCcEEEEeC
Confidence 6433 445666666655 2221 10011344556788999998774
No 95
>3lye_A Oxaloacetate acetyl hydrolase; (alpha/beta)8 barrel; 1.30A {Cryphonectria parasitica} PDB: 3m0j_A* 3m0k_A
Probab=77.13 E-value=16 Score=35.90 Aligned_cols=103 Identities=17% Similarity=0.084 Sum_probs=60.8
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHH---HHHHHHHH----CCCeEEEeeecccCCCCCCcc
Q 013861 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPR---TIWLLKDR----YPDLVIYTDVALDPYSSDGHD 230 (435)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~r---aIr~iK~~----~Pdl~IitDVcLc~YTshGHc 230 (435)
.+.+.++++.+.|+..|.|=+.+.+ +| +|--.-.+==+... -|++.++. -||++|++=+- .+..
T Consensus 104 ~v~~~v~~l~~aGaagv~iEDq~~~-k~--cgh~~gk~l~~~~e~~~rI~Aa~~A~~~~~~d~~I~ARTD--a~~~---- 174 (307)
T 3lye_A 104 MVARTVEHYIRSGVAGAHLEDQILT-KR--CGHLSGKKVVSRDEYLVRIRAAVATKRRLRSDFVLIARTD--ALQS---- 174 (307)
T ss_dssp HHHHHHHHHHHTTCCEEEECCBCCC-C----------CBCCHHHHHHHHHHHHHHHHHTTCCCEEEEEEC--CHHH----
T ss_pred HHHHHHHHHHHcCCeEEEEcCCCCC-cc--cCCCCCCeecCHHHHHHHHHHHHHHHHhcCCCeEEEEech--hhhc----
Confidence 4788899999999999998554321 12 22111000012223 33344432 47888886432 1110
Q ss_pred eeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC-chHHHHHHHHH
Q 013861 231 GIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMD-GRVGAIRAALD 281 (435)
Q Consensus 231 GIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMMD-GrVgAIR~aLD 281 (435)
..++...+-|..|++||||+|-+-.+-| ..+.+|.++++
T Consensus 175 ------------~gldeAi~Ra~ay~eAGAD~ifi~~~~~~~~~~~i~~~~~ 214 (307)
T 3lye_A 175 ------------LGYEECIERLRAARDEGADVGLLEGFRSKEQAAAAVAALA 214 (307)
T ss_dssp ------------HCHHHHHHHHHHHHHTTCSEEEECCCSCHHHHHHHHHHHT
T ss_pred ------------cCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHcc
Confidence 1244555667889999999999887776 56777777774
No 96
>2gou_A Oxidoreductase, FMN-binding; OLD yeallow enzyme, flavoenzyme; HET: BOG FMN PE4; 1.40A {Shewanella oneidensis} PDB: 2gq8_A* 2gq9_A* 2gqa_A*
Probab=76.88 E-value=59 Score=31.92 Aligned_cols=39 Identities=15% Similarity=0.120 Sum_probs=26.7
Q ss_pred ccccccEEecccCCCcccCCCchHHHHHHHHhhCCCCeEE
Q 013861 339 ESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAA 378 (435)
Q Consensus 339 ~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~~lPvaa 378 (435)
.+.|+|.|-++.-...-+|.. -++.++.+|+.+++||.+
T Consensus 260 ~~~G~d~i~v~~~~~~~~~~~-~~~~~~~i~~~~~iPvi~ 298 (365)
T 2gou_A 260 NKHRIVYLHIAEVDWDDAPDT-PVSFKRALREAYQGVLIY 298 (365)
T ss_dssp HHTTCSEEEEECCBTTBCCCC-CHHHHHHHHHHCCSEEEE
T ss_pred HHcCCCEEEEeCCCcCCCCCc-cHHHHHHHHHHCCCcEEE
Confidence 357999998543211113432 269999999999999875
No 97
>1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1
Probab=76.80 E-value=7.9 Score=35.52 Aligned_cols=71 Identities=25% Similarity=0.283 Sum_probs=50.1
Q ss_pred ccccccEEecccCCCcccCCCchHHHHHHHHhhC--CCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhccc
Q 013861 339 ESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKY--PLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGAD 416 (435)
Q Consensus 339 ~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~--~lPvaaYqVSGEYaMikaAa~~G~ide~~~v~Esl~~ikRAGAd 416 (435)
++.|||+|-.|. |. .++..-++.++.+++.. ++||.+ .|-+...+-++|.| ++|||
T Consensus 142 ~eaGad~I~tst-g~--~~gga~~~~i~~v~~~v~~~ipVia---------------~GGI~t~~da~~~l----~aGA~ 199 (225)
T 1mzh_A 142 IEAGADFIKTST-GF--APRGTTLEEVRLIKSSAKGRIKVKA---------------SGGIRDLETAISMI----EAGAD 199 (225)
T ss_dssp HHHTCSEEECCC-SC--SSSCCCHHHHHHHHHHHTTSSEEEE---------------ESSCCSHHHHHHHH----HTTCS
T ss_pred HHhCCCEEEECC-CC--CCCCCCHHHHHHHHHHhCCCCcEEE---------------ECCCCCHHHHHHHH----HhCch
Confidence 457999997554 32 24557889999999976 689876 34444333334444 59999
Q ss_pred EeehhcHHHHHHHHh
Q 013861 417 IILTYFALQAARCLC 431 (435)
Q Consensus 417 ~IiTYfA~~~a~~L~ 431 (435)
.|=|+...++.+-|.
T Consensus 200 ~iG~s~~~~i~~~~~ 214 (225)
T 1mzh_A 200 RIGTSSGISIAEEFL 214 (225)
T ss_dssp EEEESCHHHHHHHHH
T ss_pred HHHHccHHHHHHHHH
Confidence 999999988887654
No 98
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=76.68 E-value=9 Score=36.77 Aligned_cols=57 Identities=16% Similarity=0.212 Sum_probs=37.8
Q ss_pred hHHHHHHHHhh-CCCCeEE--EE----echHHHHHHHHHHCCCC-----c--hhhHHHHHHHHHHHhcccEe
Q 013861 361 YLDVIRLLRDK-YPLPIAA--YQ----VSGEYSMIKAGGALKMI-----D--EQRVMMESLMCLRRAGADII 418 (435)
Q Consensus 361 YLDIIr~vk~~-~~lPvaa--Yq----VSGEYaMikaAa~~G~i-----d--e~~~v~Esl~~ikRAGAd~I 418 (435)
++|+++++|++ .++|+.. |- --|.-..++.++++|.= | .++ .-|....+++.|-+.|
T Consensus 84 ~~~~v~~~r~~~~~~Pivlm~Y~n~v~~~g~~~f~~~~~~aGvdGvIipDlp~ee-~~~~~~~~~~~gl~~I 154 (271)
T 3nav_A 84 CFELIAQIRARNPETPIGLLMYANLVYARGIDDFYQRCQKAGVDSVLIADVPTNE-SQPFVAAAEKFGIQPI 154 (271)
T ss_dssp HHHHHHHHHHHCTTSCEEEEECHHHHHHTCHHHHHHHHHHHTCCEEEETTSCGGG-CHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHhcCCCCCEEEEecCcHHHHHhHHHHHHHHHHCCCCEEEECCCCHHH-HHHHHHHHHHcCCeEE
Confidence 48999999988 6899976 42 13555667777776641 1 122 4566777788888765
No 99
>2jfz_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: 003 DGL; 1.86A {Helicobacter pylori} PDB: 2jfx_A* 2jfy_A* 2w4i_A*
Probab=76.09 E-value=7 Score=36.23 Aligned_cols=134 Identities=10% Similarity=-0.015 Sum_probs=78.4
Q ss_pred HHHHHHHHCCC--eEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC---------
Q 013861 202 TIWLLKDRYPD--LVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMD--------- 270 (435)
Q Consensus 202 aIr~iK~~~Pd--l~IitDVcLc~YTshGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMMD--------- 270 (435)
..+.|++.+|+ ++-+.|....||-. -..++-.+.+.+.+-.+.+.|||.|.=..--+
T Consensus 15 v~~~l~~~lP~~~~iy~~D~~~~Pyg~------------~s~~~i~~~~~~~~~~L~~~g~d~iviaCNTa~~~~~~~lr 82 (255)
T 2jfz_A 15 VLKSLLKARLFDEIIYYGDSARVPYGT------------KDPTTIKQFGLEALDFFKPHEIELLIVACNTASALALEEMQ 82 (255)
T ss_dssp HHHHHHHTTCCSEEEEEECTTTCCCTT------------SCHHHHHHHHHHHHHHHGGGCCSCEEECCHHHHHHTHHHHH
T ss_pred HHHHHHHHCCCCCEEEEeCCCCCCCCC------------CCHHHHHHHHHHHHHHHHHCCCCEEEEeCchhhHHHHHHHH
Confidence 46778888995 77788999999832 13344555666666667778999774322111
Q ss_pred --------c-hHHHHHHHHHH--CCCCCceeechhhhhcccccccchhhhc-------CCCCCCC-ccccCCCCCCHHHH
Q 013861 271 --------G-RVGAIRAALDA--EGFQHVSIMSYTAKYASSFYGPFREALD-------SNPRFGD-KKTYQMNPANYREA 331 (435)
Q Consensus 271 --------G-rVgAIR~aLD~--~Gf~~v~IMSYSaKyASafYGPFRdA~~-------Sap~fgD-RktYQmdp~N~~EA 331 (435)
| -..+++.++.. .+..+++||+=..--.|.+|.-+-+..+ ..|.+-+ -..-+.+....++.
T Consensus 83 ~~~~iPvigii~~av~~A~~~~~~~~~rigVlaT~~T~~~~~y~~~l~~~g~~~v~~~~~~~lv~~ie~g~~~~~~~~~~ 162 (255)
T 2jfz_A 83 KYSKIPIVGVIEPSILAIKRQVEDKNAPILVLGTKATIQSNAYDNALKQQGYLNISHLATSLFVPLIEESILEGELLETC 162 (255)
T ss_dssp HHCSSCEECSSHHHHHHHHHHCCCTTSCEEEEECHHHHHHTHHHHHHHHTTCCCEEEEECTTHHHHHHTTCCSSHHHHHH
T ss_pred HhCCCCEEeeeHHHHHHHHHhhcCCCCEEEEEECHHHHhChHHHHHHHHcCCCEEEecChHHHHHHHHhcccCCHHHHHH
Confidence 2 45567777766 6668999997544455666544333322 1111100 00001122224566
Q ss_pred HHHHHhcccccccEEe
Q 013861 332 LVEAQADESEGADILL 347 (435)
Q Consensus 332 lre~~~D~~EGADilM 347 (435)
+++.....++|+|.|+
T Consensus 163 l~~~~~~~~~~~d~iI 178 (255)
T 2jfz_A 163 MHYYFTPLEILPEVII 178 (255)
T ss_dssp HHHHHTTCCSCCSEEE
T ss_pred HHHHHhhhcCCCCEEE
Confidence 6666655567999999
No 100
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*
Probab=76.03 E-value=1 Score=42.13 Aligned_cols=135 Identities=21% Similarity=0.198 Sum_probs=75.2
Q ss_pred HHcCCCeecCCCCCCch-----------HHHHHHHHHHCCCCCceeechhhhhcccccccchhh----------------
Q 013861 256 ARAGADVVSPSDMMDGR-----------VGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREA---------------- 308 (435)
Q Consensus 256 A~AGADiVAPSDMMDGr-----------VgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRdA---------------- 308 (435)
+++|||++= =|.|||. |.+||+.- .-.-++=+|-+-. ..|-..|.+|
T Consensus 22 ~~~gad~lH-vDvmDG~fvpn~t~G~~~v~~lr~~~--~~~~dvhLmv~dp---~~~i~~~~~aGAd~itvh~Ea~~~~~ 95 (231)
T 3ctl_A 22 IDSHADYFH-IDIMDGHFVPNLTLSPFFVSQVKKLA--TKPLDCHLMVTRP---QDYIAQLARAGADFITLHPETINGQA 95 (231)
T ss_dssp HHTTCSCEE-EEEECSSSSSCCCBCHHHHHHHHTTC--CSCEEEEEESSCG---GGTHHHHHHHTCSEEEECGGGCTTTH
T ss_pred HHcCCCEEE-EEEEeCccCccchhcHHHHHHHHhcc--CCcEEEEEEecCH---HHHHHHHHHcCCCEEEECcccCCccH
Confidence 389999862 3789997 67777643 1234666666532 1122222222
Q ss_pred ---hcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEec-c---cCCCcccCCCchHHHHHHHHhhC-----CCCe
Q 013861 309 ---LDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLF-S---VLGSQVKPGLPYLDVIRLLRDKY-----PLPI 376 (435)
Q Consensus 309 ---~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~-~---~~~~~VKPal~YLDIIr~vk~~~-----~lPv 376 (435)
+...-..|=+-.--++|....|.+. .+.+++|+|++ | ..|.|- =.-.-+|-|+++|+.. ++||
T Consensus 96 ~~~i~~i~~~G~k~gv~lnp~tp~~~~~----~~l~~~D~VlvmsV~pGfggQ~-f~~~~l~kI~~lr~~~~~~~~~~~I 170 (231)
T 3ctl_A 96 FRLIDEIRRHDMKVGLILNPETPVEAMK----YYIHKADKITVMTVDPGFAGQP-FIPEMLDKLAELKAWREREGLEYEI 170 (231)
T ss_dssp HHHHHHHHHTTCEEEEEECTTCCGGGGT----TTGGGCSEEEEESSCTTCSSCC-CCTTHHHHHHHHHHHHHHHTCCCEE
T ss_pred HHHHHHHHHcCCeEEEEEECCCcHHHHH----HHHhcCCEEEEeeeccCcCCcc-ccHHHHHHHHHHHHHHhccCCCceE
Confidence 1111112333344467877755554 44568999852 2 133332 1223488888888754 4665
Q ss_pred EEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEeehh
Q 013861 377 AAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTY 421 (435)
Q Consensus 377 aaYqVSGEYaMikaAa~~G~ide~~~v~Esl~~ikRAGAd~IiTY 421 (435)
+| -|-++.+ +...+..||||+++.-
T Consensus 171 ---~V------------dGGI~~~-----~~~~~~~aGAd~~V~G 195 (231)
T 3ctl_A 171 ---EV------------DGSCNQA-----TYEKLMAAGADVFIVG 195 (231)
T ss_dssp ---EE------------ESCCSTT-----THHHHHHHTCCEEEEC
T ss_pred ---EE------------ECCcCHH-----HHHHHHHcCCCEEEEc
Confidence 33 4667765 3456788999998754
No 101
>3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae}
Probab=75.98 E-value=12 Score=36.21 Aligned_cols=115 Identities=18% Similarity=0.241 Sum_probs=70.5
Q ss_pred cCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCC--------CCchHHHHHHHHHHCCCCCceeechhhhhcccccccc
Q 013861 234 REDGVIMNDETVHQLCKQAVSQARAGADVVSPSDM--------MDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPF 305 (435)
Q Consensus 234 ~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDM--------MDGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPF 305 (435)
++||.||-| .++.|++ -+.++|+|-|.+.+. .+=|...++.+.+..+ .+++|+.-..
T Consensus 20 ~~dg~iD~~-~l~~lv~---~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~-grvpViaGvg---------- 84 (311)
T 3h5d_A 20 HEDGSINFD-AIPALIE---HLLAHHTDGILLAGTTAESPTLTHDEELELFAAVQKVVN-GRVPLIAGVG---------- 84 (311)
T ss_dssp CTTSSBCTT-HHHHHHH---HHHHTTCCCEEESSTTTTGGGSCHHHHHHHHHHHHHHSC-SSSCEEEECC----------
T ss_pred CCCCCcCHH-HHHHHHH---HHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhC-CCCcEEEeCC----------
Confidence 356788744 3444443 455899998876653 3457777888887765 4777775421
Q ss_pred hhhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccc-cEEecccCCCcccCCCc-hHHHHHHHHhhCCCCeEEEEech
Q 013861 306 REALDSNPRFGDKKTYQMNPANYREALVEAQADESEGA-DILLFSVLGSQVKPGLP-YLDVIRLLRDKYPLPIAAYQVSG 383 (435)
Q Consensus 306 RdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGA-DilM~~~~~~~VKPal~-YLDIIr~vk~~~~lPvaaYqVSG 383 (435)
+ .|.+|++..++.=.+-|| |.+| .+--...||..- ..+-.+.+.+.+++||.-||+-|
T Consensus 85 -----~--------------~~t~~ai~la~~A~~~Ga~davl-v~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P~ 144 (311)
T 3h5d_A 85 -----T--------------NDTRDSIEFVKEVAEFGGFAAGL-AIVPYYNKPSQEGMYQHFKAIADASDLPIIIYNIPG 144 (311)
T ss_dssp -----C--------------SSHHHHHHHHHHHHHSCCCSEEE-EECCCSSCCCHHHHHHHHHHHHHSCSSCEEEEECHH
T ss_pred -----C--------------cCHHHHHHHHHHHHhcCCCcEEE-EcCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEeccc
Confidence 1 157887766655444487 9998 111122233210 14445577788899999999744
No 102
>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A
Probab=75.86 E-value=1.7 Score=39.30 Aligned_cols=59 Identities=17% Similarity=0.183 Sum_probs=39.7
Q ss_pred CCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhCCCCeEE
Q 013861 316 GDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAA 378 (435)
Q Consensus 316 gDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~~lPvaa 378 (435)
|+++.|+....+..|..++.+ +.|||+|-++-+...-.-....++.+++++ .+++|+.+
T Consensus 20 G~~~~~~~~~~~~~~~a~~~~---~~Gad~i~v~d~~~~~~~~~~~~~~i~~i~-~~~ipvi~ 78 (241)
T 1qo2_A 20 GRKENTIFYEKDPVELVEKLI---EEGFTLIHVVDLSNAIENSGENLPVLEKLS-EFAEHIQI 78 (241)
T ss_dssp GCGGGEEEESSCHHHHHHHHH---HTTCCCEEEEEHHHHHHCCCTTHHHHHHGG-GGGGGEEE
T ss_pred cccccceecCcCHHHHHHHHH---HcCCCEEEEecccccccCCchhHHHHHHHH-hcCCcEEE
Confidence 667777755667777666654 589999985532111112245699999999 88899765
No 103
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=75.75 E-value=3.3 Score=36.60 Aligned_cols=39 Identities=15% Similarity=0.353 Sum_probs=26.8
Q ss_pred cccccEEecccCCCcccCCCchHHHHHHHHhhCCCCeEE
Q 013861 340 SEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAA 378 (435)
Q Consensus 340 ~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~~lPvaa 378 (435)
+.|+|.|.++.+...-......+++|+++++.+++|+.+
T Consensus 44 ~~G~d~i~v~~~~~~~~~~~~~~~~i~~i~~~~~ipvi~ 82 (253)
T 1h5y_A 44 EEGADEIAILDITAAPEGRATFIDSVKRVAEAVSIPVLV 82 (253)
T ss_dssp HTTCSCEEEEECCCCTTTHHHHHHHHHHHHHHCSSCEEE
T ss_pred HcCCCEEEEEeCCccccCCcccHHHHHHHHHhcCCCEEE
Confidence 579998875543321111124689999999999999875
No 104
>2yci_X 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; 1.78A {Carboxydothermus hydrogenoformans} PDB: 2ycj_A* 2yck_X*
Probab=75.54 E-value=9.6 Score=36.45 Aligned_cols=95 Identities=18% Similarity=0.098 Sum_probs=62.3
Q ss_pred CCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHC--C--CCc---
Q 013861 326 ANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGAL--K--MID--- 398 (435)
Q Consensus 326 ~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~--G--~id--- 398 (435)
.+.++|+..+..-+++|||||=...-.+.-...--...+|+.+++.+++|+..=-- .-..+++|.+. | +++
T Consensus 31 ~~~~~a~~~a~~~v~~GAdiIDIg~~s~~~eE~~rv~~vi~~l~~~~~~pisIDT~--~~~v~~aal~a~~Ga~iINdvs 108 (271)
T 2yci_X 31 KDPRPIQEWARRQAEKGAHYLDVNTGPTADDPVRVMEWLVKTIQEVVDLPCCLDST--NPDAIEAGLKVHRGHAMINSTS 108 (271)
T ss_dssp TCCHHHHHHHHHHHHTTCSEEEEECCSCSSCHHHHHHHHHHHHHHHCCCCEEEECS--CHHHHHHHHHHCCSCCEEEEEC
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEcCCcCchhHHHHHHHHHHHHHHhCCCeEEEeCC--CHHHHHHHHHhCCCCCEEEECC
Confidence 35688999999999999999982211111011113577888999989999976433 45566666666 4 333
Q ss_pred hh-hHHHHHHHHHHHhcccEeehhc
Q 013861 399 EQ-RVMMESLMCLRRAGADIILTYF 422 (435)
Q Consensus 399 e~-~~v~Esl~~ikRAGAd~IiTYf 422 (435)
.+ .-+-|.+.-.++.|+.+|+..+
T Consensus 109 ~~~d~~~~~~~~~a~~~~~vv~m~~ 133 (271)
T 2yci_X 109 ADQWKMDIFFPMAKKYEAAIIGLTM 133 (271)
T ss_dssp SCHHHHHHHHHHHHHHTCEEEEESC
T ss_pred CCccccHHHHHHHHHcCCCEEEEec
Confidence 11 2123455567888999999877
No 105
>3i10_A Putative glycerophosphoryl diester phosphodiester; NP_812074.1; HET: MSE; 1.35A {Bacteroides thetaiotaomicron vpi-5482}
Probab=75.36 E-value=15 Score=35.02 Aligned_cols=64 Identities=20% Similarity=0.000 Sum_probs=49.2
Q ss_pred hHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhhHH---HHHHHHHHHh-cccEeehhcHHHHHHHHhcc
Q 013861 361 YLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVM---MESLMCLRRA-GADIILTYFALQAARCLCGE 433 (435)
Q Consensus 361 YLDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G~ide~~~v---~Esl~~ikRA-GAd~IiTYfA~~~a~~L~~~ 433 (435)
...+++++++ .+++|-.+-+.+++ ..|..|.. .+ -+.+..+..+ |+|+|+|-+-..+.+||+..
T Consensus 207 ~~~~v~~~~~-~g~~v~~nTlw~~~-------~~g~~d~~-a~~d~~~~~~~l~~~~Gvd~I~TD~P~~l~~yL~~~ 274 (278)
T 3i10_A 207 LPPKIKQLLF-KKSLIWYNTLWGSL-------AGNHDDNL-ALTDPEKSYGYLIEQLGARILQTDQPAYLLDYLRKK 274 (278)
T ss_dssp SHHHHHHHHT-TTSEEEEECSSGGG-------BTTCCHHH-HHHCHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred hHHHHHHHHH-CCCEEEEEeccccc-------ccCccchh-hccChHHHHHHHHhcCCCCEEEeCCHHHHHHHHhhc
Confidence 3567888774 67999999888885 34655543 33 3567888999 99999999999999999753
No 106
>1xg4_A Probable methylisocitrate lyase; 2-methylisocitrate lyase/inhibitor complex, isocitrate lyase superfamily; HET: ICT; 1.60A {Escherichia coli} PDB: 1xg3_A* 1mum_A 1oqf_A 1ujq_A 1o5q_A
Probab=75.20 E-value=24 Score=34.34 Aligned_cols=115 Identities=16% Similarity=0.155 Sum_probs=70.7
Q ss_pred CCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCC-cccCcCcCCCCCHHHHHHHHHHHC--CCeEEEeeecccC
Q 013861 147 MPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKS-PTGDEAYNDNGLVPRTIWLLKDRY--PDLVIYTDVALDP 223 (435)
Q Consensus 147 MPGv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd-~~Gs~A~~~~g~v~raIr~iK~~~--Pdl~IitDVcLc~ 223 (435)
||.=|--+.. .+.+.++++.+.|+..|-|=+-+.. .|. -.|....-|..-...-|+++++.- +++.|++=.- .
T Consensus 85 ~d~Gyg~~~~-~~~~~v~~l~~aGa~gv~iEd~~~~-k~cgH~~gk~L~p~~~~~~~I~Aa~~a~~~~~~~i~aRtd--a 160 (295)
T 1xg4_A 85 ADIGFGSSAF-NVARTVKSMIKAGAAGLHIEDQVGA-KRSGHRPNKAIVSKEEMVDRIRAAVDAKTDPDFVIMARTD--A 160 (295)
T ss_dssp CTTCSSSSHH-HHHHHHHHHHHHTCSEEEEECBCSS-CCCTTSSSCCBCCHHHHHHHHHHHHHHCSSTTSEEEEEEC--C
T ss_pred CCcccCCCHH-HHHHHHHHHHHcCCeEEEECCCCCC-cccCCCCCCccCCHHHHHHHHHHHHHhccCCCcEEEEecH--H
Confidence 4433443443 4889999999999999998544311 111 111122333333445667777663 4444443110 0
Q ss_pred CCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC-chHHHHHHHHH
Q 013861 224 YSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMD-GRVGAIRAALD 281 (435)
Q Consensus 224 YTshGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMMD-GrVgAIR~aLD 281 (435)
+ -.+.++.+.+-|..+++||||+|-+-.+-| -.+.+|.++|+
T Consensus 161 ~----------------~~~gl~~ai~ra~ay~eAGAd~i~~e~~~~~~~~~~i~~~~~ 203 (295)
T 1xg4_A 161 L----------------AVEGLDAAIERAQAYVEAGAEMLFPEAITELAMYRQFADAVQ 203 (295)
T ss_dssp H----------------HHHCHHHHHHHHHHHHHTTCSEEEETTCCSHHHHHHHHHHHC
T ss_pred h----------------hhcCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHcC
Confidence 0 023467888899999999999998888776 67778888873
No 107
>3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A
Probab=75.20 E-value=5.5 Score=36.24 Aligned_cols=49 Identities=27% Similarity=0.344 Sum_probs=33.2
Q ss_pred CHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhCCCCeEE
Q 013861 327 NYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAA 378 (435)
Q Consensus 327 N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~~lPvaa 378 (435)
+..|..++.+ +.|+|.|.++-+...-......+++|+++++.+++||.+
T Consensus 36 ~~~~~a~~~~---~~G~~~i~v~d~~~~~~~~~~~~~~i~~i~~~~~ipvi~ 84 (247)
T 3tdn_A 36 LLRDWVVEVE---KRGAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIA 84 (247)
T ss_dssp EHHHHHHHHH---HTTCSEEEEEETTTTTCSSCCCHHHHHHHGGGCCSCEEE
T ss_pred CHHHHHHHHH---HcCCCEEEEEecCcccCCCcccHHHHHHHHHhCCCCEEE
Confidence 4445444443 489999986554322222346799999999999999965
No 108
>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}
Probab=74.89 E-value=8.1 Score=36.17 Aligned_cols=57 Identities=12% Similarity=0.179 Sum_probs=33.4
Q ss_pred hHHHHHHHHhhC-CCCeEEE--Ee----chHHHHHHHHHHCCCCc----hh---hHHHHHHHHHHHhcccEe
Q 013861 361 YLDVIRLLRDKY-PLPIAAY--QV----SGEYSMIKAGGALKMID----EQ---RVMMESLMCLRRAGADII 418 (435)
Q Consensus 361 YLDIIr~vk~~~-~lPvaaY--qV----SGEYaMikaAa~~G~id----e~---~~v~Esl~~ikRAGAd~I 418 (435)
++++++++|+.+ ++|+..- -= -|.-..++.+++.|. | .+ +-+.|....+++.|-+.|
T Consensus 81 ~~~~v~~ir~~~~~~Pi~~m~y~n~v~~~g~~~f~~~~~~aG~-dgvii~dl~~ee~~~~~~~~~~~gl~~i 151 (262)
T 2ekc_A 81 VLELSETLRKEFPDIPFLLMTYYNPIFRIGLEKFCRLSREKGI-DGFIVPDLPPEEAEELKAVMKKYVLSFV 151 (262)
T ss_dssp HHHHHHHHHHHCTTSCEEEECCHHHHHHHCHHHHHHHHHHTTC-CEEECTTCCHHHHHHHHHHHHHTTCEEC
T ss_pred HHHHHHHHHhhcCCCCEEEEecCcHHHHhhHHHHHHHHHHcCC-CEEEECCCCHHHHHHHHHHHHHcCCcEE
Confidence 578999999998 8999883 10 022344555555553 2 10 113455556666676544
No 109
>1b73_A Glutamate racemase; isomerase; 2.30A {Aquifex pyrophilus} SCOP: c.78.2.1 c.78.2.1 PDB: 1b74_A*
Probab=74.19 E-value=25 Score=32.43 Aligned_cols=166 Identities=17% Similarity=0.187 Sum_probs=94.8
Q ss_pred HHHHHHHHCCC--eEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC---------
Q 013861 202 TIWLLKDRYPD--LVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMD--------- 270 (435)
Q Consensus 202 aIr~iK~~~Pd--l~IitDVcLc~YTshGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMMD--------- 270 (435)
..+.|++..|+ ++-++|..-.|| |.-..++-.+++.+.+-.+.++|+|.|.=..--+
T Consensus 15 v~~~l~~~~P~~~~iy~~D~~~~py------------G~~s~~~i~~~~~~~~~~L~~~g~d~iviaCnTa~~~~~~~lr 82 (254)
T 1b73_A 15 VLKAIRNRYRKVDIVYLGDTARVPY------------GIRSKDTIIRYSLECAGFLKDKGVDIIVVACNTASAYALERLK 82 (254)
T ss_dssp HHHHHHHHSTTCEEEEEECTTTCCC------------TTSCHHHHHHHHHHHHHHHHTTTCSEEEECCHHHHTTSHHHHH
T ss_pred HHHHHHHhCCCCcEEEeecCCCCCC------------CcCCHHHHHHHHHHHHHHHHHCCCCEEEEeCchhhHHHHHHHH
Confidence 56778888995 444599998898 2222333334445555556678999875433222
Q ss_pred --------c-hHHHHHHHHHHCCCCCceeechhhhhcccccccchhhhc------CCCCCC-CccccCCCCCCHHHHHHH
Q 013861 271 --------G-RVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALD------SNPRFG-DKKTYQMNPANYREALVE 334 (435)
Q Consensus 271 --------G-rVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRdA~~------Sap~fg-DRktYQmdp~N~~EAlre 334 (435)
| -..+++.++...+-.+++||+=.....|.+|.-+-++.+ ..|.+- .-+.-++++...++.+++
T Consensus 83 ~~~~iPvigi~e~~~~~A~~~~~~~rigVlaT~~T~~~~~y~~~l~~~g~~v~~~~~~~~v~~ie~g~~~~~~~~~~l~~ 162 (254)
T 1b73_A 83 KEINVPVFGVIEPGVKEALKKSRNKKIGVIGTPATVKSGAYQRKLEEGGADVFAKACPLFAPLAEEGLLEGEITRKVVEH 162 (254)
T ss_dssp HHSSSCEEESHHHHHHHHHHHCSSCEEEEEECHHHHHHCHHHHHHHTTSCEEEEEECCCCTTTSCGGGGSGGGHHHHHHH
T ss_pred HhCCCCEEeeeHHHHHHHHHccCCCEEEEEEChHHhhhHHHHHHHHcCCCEEEecCCHHHHHHHHCCCCCCHHHHHHHHH
Confidence 2 223566666655667999998666666777754433221 123221 111222333345677888
Q ss_pred HHhcccccccEEecccCCCcccCCCchHHHHHHHHhhC-CCCeEEEEechHHHHHHHH
Q 013861 335 AQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAG 391 (435)
Q Consensus 335 ~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~-~lPvaaYqVSGEYaMikaA 391 (435)
....+.+.+|.|+ ||-.==|. +...+++.+ ++|| |++--++.+++
T Consensus 163 ~~~~l~~~~d~II---LGCT~~p~-----l~~~i~~~~~~vpv----iDs~~~~a~~~ 208 (254)
T 1b73_A 163 YLKEFKGKIDTLI---LGCTHYPL-----LKKEIKKFLGDAEV----VDSSEALSLSL 208 (254)
T ss_dssp HSTTTTTTCSEEE---ECCCCTTC-----CHHHHHHHSCSCEE----ECHHHHHHHTT
T ss_pred HHHHHHhcCCEEE---ECccChHH-----HHHHHHHHcCCCeE----ECCHHHHHHHH
Confidence 8777653499999 45432222 344455555 5664 35655666654
No 110
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=74.11 E-value=6.7 Score=35.33 Aligned_cols=49 Identities=22% Similarity=0.312 Sum_probs=33.1
Q ss_pred CHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhCCCCeEE
Q 013861 327 NYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAA 378 (435)
Q Consensus 327 N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~~lPvaa 378 (435)
+..|..++. .+.|||.|-++-+...-.....+++.++++++.+++||.+
T Consensus 32 d~~~~a~~~---~~~Gad~i~v~d~~~~~~~~~~~~~~i~~i~~~~~iPvi~ 80 (252)
T 1ka9_F 32 DPVEAARAY---DEAGADELVFLDISATHEERAILLDVVARVAERVFIPLTV 80 (252)
T ss_dssp CHHHHHHHH---HHHTCSCEEEEECCSSTTCHHHHHHHHHHHHTTCCSCEEE
T ss_pred CHHHHHHHH---HHcCCCEEEEEcCCccccCccccHHHHHHHHHhCCCCEEE
Confidence 455555544 3579999885543322122345789999999999999986
No 111
>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1
Probab=74.02 E-value=47 Score=34.51 Aligned_cols=174 Identities=19% Similarity=0.250 Sum_probs=0.0
Q ss_pred EEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCe----------------ecCCCCC--------
Q 013861 214 VIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADV----------------VSPSDMM-------- 269 (435)
Q Consensus 214 ~IitDVcLc~YTshGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADi----------------VAPSDMM-------- 269 (435)
+|||-.+.-.-...++-+.+ .+.+|+-++.+.+.+-.--+.|+-+ ++||..-
T Consensus 53 liite~~~v~~~~~~~~~~~----~~~~~~~~~~~~~~~~~vh~~g~~i~~Ql~h~Gr~~~~~~~~~ps~~~~~~~~~~p 128 (671)
T 1ps9_A 53 LIVSGGIAPDLTGVGMEGGA----MLNDASQIPHHRTITEAVHQEGGKIALQILHTGRYSYQPHLVAPSALQAPINRFVP 128 (671)
T ss_dssp EEEEEEEBSSSTTCSBTTCC----BCCSGGGHHHHHHHHHHHHHTTCCEEEEECCCGGGSBSTTCEESSSCCCTTCSSCC
T ss_pred EEEecccccCccccCCCCCC----ccCCHHHHHHHHHHHHHHHhcCCEEEEEeccCCcccCCCCCcCCCCcccccCCCCC
Q ss_pred ------------CchHHHHHHHHHHCCCCCceeechhhhhcccccccc--------------------------hhhhcC
Q 013861 270 ------------DGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPF--------------------------REALDS 311 (435)
Q Consensus 270 ------------DGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPF--------------------------RdA~~S 311 (435)
+.-+.+.|.+.+ +||.-|=|-.=-.-.-+.|..|. |++++.
T Consensus 129 ~~~t~~ei~~~i~~~~~aA~~a~~-aGfd~veih~~~gyl~~qFlsp~~n~r~d~yGgs~~~r~r~~~eiv~avr~~vG~ 207 (671)
T 1ps9_A 129 HELSHEEILQLIDNFARCAQLARE-AGYDGVEVMGSEGYLINEFLTLRTNQRSDQWGGDYRNRMRFAVEVVRAVRERVGN 207 (671)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHH-TTCSEEEEEECBTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCS
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHH-cCCCEEEEccccchHHHHhCCCccCCCcCcCCCcHHHHHHHHHHHHHHHHHHcCC
Q ss_pred CCCCCCccc---cCCCCCCHHHHHHHHHhcccccccEEecccCCCcc---------------cCCCchHHHHHHHHhhCC
Q 013861 312 NPRFGDKKT---YQMNPANYREALVEAQADESEGADILLFSVLGSQV---------------KPGLPYLDVIRLLRDKYP 373 (435)
Q Consensus 312 ap~fgDRkt---YQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~V---------------KPal~YLDIIr~vk~~~~ 373 (435)
.-..+=|-+ +.-.--+..|++.-+..=.+.|+|+|- | +|...+++.++.+|+.++
T Consensus 208 ~~~v~vrls~~~~~~~g~~~~~~~~~a~~l~~~g~d~i~-------v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 280 (671)
T 1ps9_A 208 DFIIIYRLSMLDLVEDGGTFAETVELAQAIEAAGATIIN-------TGIGWHEARIPTIATPVPRGAFSWVTRKLKGHVS 280 (671)
T ss_dssp SSEEEEEEEEECCSTTCCCHHHHHHHHHHHHHHTCSEEE-------EEECBTTCSSCSSSTTSCTTTTHHHHHHHTTSCS
T ss_pred CceEEEEECccccCCCCCCHHHHHHHHHHHHhcCCCEEE-------cCCCccccccccccccCCcchHHHHHHHHHHhcC
Q ss_pred CCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhc-ccEe
Q 013861 374 LPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAG-ADII 418 (435)
Q Consensus 374 lPvaaYqVSGEYaMikaAa~~G~ide~~~v~Esl~~ikRAG-Ad~I 418 (435)
+||.+ .|-+.. .|....+.+.| ||+|
T Consensus 281 iPvi~---------------~Ggi~~----~~~a~~~l~~g~aD~V 307 (671)
T 1ps9_A 281 LPLVT---------------TNRIND----PQVADDILSRGDADMV 307 (671)
T ss_dssp SCEEE---------------CSSCCS----HHHHHHHHHTTSCSEE
T ss_pred ceEEE---------------eCCCCC----HHHHHHHHHcCCCCEE
No 112
>2ze3_A DFA0005; organic waste LEFT-OVER decomposition, alkaliphilic, ICL/PEPM superfamily, alpha-ketoglutarate LIG isomerase; HET: AKG; 1.65A {Deinococcus ficus}
Probab=73.96 E-value=27 Score=33.60 Aligned_cols=116 Identities=21% Similarity=0.212 Sum_probs=73.1
Q ss_pred CCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHH----CCCeEEEeeeccc
Q 013861 147 MPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDR----YPDLVIYTDVALD 222 (435)
Q Consensus 147 MPGv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~----~Pdl~IitDVcLc 222 (435)
||.=|--+.. .+.+.++++.+.|+..|.|=+-+.+ .|..-. +-.-...-|+.+++. -+++.|++=. |
T Consensus 83 ~d~Gyg~~~~-~~~~~v~~l~~aGaagv~iED~~~~-----~~k~l~-~~~e~~~~I~aa~~a~~~~g~~~~i~aRt--d 153 (275)
T 2ze3_A 83 IEAGYGHAPE-DVRRTVEHFAALGVAGVNLEDATGL-----TPTELY-DLDSQLRRIEAARAAIDASGVPVFLNART--D 153 (275)
T ss_dssp CTTCSSSSHH-HHHHHHHHHHHTTCSEEEEECBCSS-----SSSCBC-CHHHHHHHHHHHHHHHHHHTSCCEEEEEC--C
T ss_pred cCCCCCCCHH-HHHHHHHHHHHcCCcEEEECCCcCC-----CCCccC-CHHHHHHHHHHHHHhHhhcCCCeEEEEec--h
Confidence 4444544443 5889999999999999998554221 122212 222344567777776 5677776532 2
Q ss_pred CCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC-chHHHHHHHH
Q 013861 223 PYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMD-GRVGAIRAAL 280 (435)
Q Consensus 223 ~YTshGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMMD-GrVgAIR~aL 280 (435)
.|. .| . |.= ..+.++.+.+-|..+++||||+|-+-.+-| -.+..|.++|
T Consensus 154 a~~-~~----~---g~~-~~~~~~~ai~Ra~ay~eAGAd~i~~e~~~~~~~~~~i~~~~ 203 (275)
T 2ze3_A 154 TFL-KG----H---GAT-DEERLAETVRRGQAYADAGADGIFVPLALQSQDIRALADAL 203 (275)
T ss_dssp TTT-TT----C---SSS-HHHHHHHHHHHHHHHHHTTCSEEECTTCCCHHHHHHHHHHC
T ss_pred hhh-cc----c---ccc-chhhHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHhc
Confidence 221 11 0 100 124688889999999999999998888766 6677777766
No 113
>2hjp_A Phosphonopyruvate hydrolase; phosporus-Ca cleavage, PEP mutase/isocitrate lyase superfamily; HET: XYS PPR; 1.90A {Variovorax SP} PDB: 2dua_A* 2hrw_A
Probab=73.16 E-value=30 Score=33.58 Aligned_cols=121 Identities=12% Similarity=0.103 Sum_probs=72.1
Q ss_pred CCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCc-cc--CcCcCCCCCHHHHHHHHHHHC--CCeEEEeeecc
Q 013861 147 MPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSP-TG--DEAYNDNGLVPRTIWLLKDRY--PDLVIYTDVAL 221 (435)
Q Consensus 147 MPGv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~-~G--s~A~~~~g~v~raIr~iK~~~--Pdl~IitDVcL 221 (435)
||.=|- +.. .+.+.+.++.+.|+..|.|=+.+.. .|.. .| ....-|-.-...-|+++++.. ++..|++=.
T Consensus 82 ~d~Gyg-~~~-~~~~~v~~l~~aGa~gv~iED~~~~-k~cgH~~~~~k~l~p~~e~~~kI~Aa~~a~~~~~~~i~aRt-- 156 (290)
T 2hjp_A 82 IDTGFG-NAV-NVHYVVPQYEAAGASAIVMEDKTFP-KDTSLRTDGRQELVRIEEFQGKIAAATAARADRDFVVIARV-- 156 (290)
T ss_dssp CTTTTS-SHH-HHHHHHHHHHHHTCSEEEEECBCSS-CCC-------CCBCCHHHHHHHHHHHHHHCSSTTSEEEEEE--
T ss_pred CCCCCC-CHH-HHHHHHHHHHHhCCeEEEEcCCCCC-ccccccccCCCcccCHHHHHHHHHHHHHhcccCCcEEEEee--
Confidence 443355 554 5899999999999999998554311 1110 11 111222222234566666663 667776532
Q ss_pred cCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCC-CCC-chHHHHHHHHHHCCCCCceee
Q 013861 222 DPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSD-MMD-GRVGAIRAALDAEGFQHVSIM 291 (435)
Q Consensus 222 c~YTshGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSD-MMD-GrVgAIR~aLD~~Gf~~v~IM 291 (435)
|.+- . .. .++.+.+-|..+++||||+|-+-. +-| -.+.+|.++|+ + .++++
T Consensus 157 da~~-a-------~~-------g~~~ai~Ra~ay~eAGAd~i~~e~~~~~~~~~~~i~~~~~--~--~vP~i 209 (290)
T 2hjp_A 157 EALI-A-------GL-------GQQEAVRRGQAYEEAGADAILIHSRQKTPDEILAFVKSWP--G--KVPLV 209 (290)
T ss_dssp CTTT-T-------TC-------CHHHHHHHHHHHHHTTCSEEEECCCCSSSHHHHHHHHHCC--C--SSCEE
T ss_pred hHhh-c-------cc-------cHHHHHHHHHHHHHcCCcEEEeCCCCCCHHHHHHHHHHcC--C--CCCEE
Confidence 1110 0 11 266777889999999999998777 766 67777777773 1 35655
No 114
>2gzm_A Glutamate racemase; enzyme, isomerase; HET: DGL; 1.99A {Bacillus anthracis}
Probab=72.71 E-value=29 Score=32.36 Aligned_cols=29 Identities=17% Similarity=0.167 Sum_probs=23.2
Q ss_pred HHHCCCCch---hhHHHHHHHHHHHhcccEee
Q 013861 391 GGALKMIDE---QRVMMESLMCLRRAGADIIL 419 (435)
Q Consensus 391 Aa~~G~ide---~~~v~Esl~~ikRAGAd~Ii 419 (435)
..+.|+++. ++.+.|.+..+++.|+|.||
T Consensus 150 ~ie~g~~~~~~~~~~l~~~~~~l~~~~~d~iV 181 (267)
T 2gzm_A 150 LVESGNFESEMAYEVVRETLQPLKNTDIDTLI 181 (267)
T ss_dssp HHHTTCSSSHHHHHHHHHHHHHHHHSCCSEEE
T ss_pred HHhCCCCCCHHHHHHHHHHHHHHHhcCCCEEE
Confidence 356888873 46778888889999999987
No 115
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=72.49 E-value=96 Score=35.36 Aligned_cols=200 Identities=16% Similarity=0.169 Sum_probs=100.4
Q ss_pred eEEEeeCC-CCcccCCCCCceeechhhhHHHHHHHHHHcC--CCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHH
Q 013861 132 PLFIHEGE-EDTPIGAMPGCYRLGWRHGLVQEVAKARDVG--VNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKD 208 (435)
Q Consensus 132 PlFV~eg~-~~~~I~sMPGv~r~s~~~~l~~~v~~~~~~G--I~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~ 208 (435)
.|.|.|-. -+- ..-+|..|++.+ +.++.++.+.++| +.++=..|- ..-+. ...+-..++. ..++.|++
T Consensus 550 ~v~i~DtTLRDG--~Qs~~~~~~~~~-dkl~ia~~L~~~gv~~~~iE~~gg---a~f~~--~~~f~~~~p~-e~l~~~~~ 620 (1165)
T 2qf7_A 550 RVLLTDTTMRDG--HQSLLATRMRTY-DIARIAGTYSHALPNLLSLECWGG---ATFDV--SMRFLTEDPW-ERLALIRE 620 (1165)
T ss_dssp SCEEEECTTTHH--HHHHHTTCCCHH-HHHHHHHHHHHHCTTCSEEEEEET---THHHH--HHHHHCCCHH-HHHHHHHH
T ss_pred ceEEEecccccc--cccCCcccCCHH-HHHHHHHHHHHhCCCceEEEeCCC---CccHH--HHhhcCCCHH-HHHHHHHH
Confidence 36777754 121 124555677775 5888899999994 555665221 00000 0000012222 47788888
Q ss_pred HCCCeEEEe--e-ecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecC----CCCCCchHHHHHHHHH
Q 013861 209 RYPDLVIYT--D-VALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSP----SDMMDGRVGAIRAALD 281 (435)
Q Consensus 209 ~~Pdl~Iit--D-VcLc~YTshGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAP----SDMMDGrVgAIR~aLD 281 (435)
..|+..+.+ - ..++-||.. . |..++.-.+.| +++|+|+|.- |+ ++ .+....+...
T Consensus 621 ~~~~~~~~~l~R~~n~vg~~~~-----------~--~~~~~~~i~~a---~~~g~d~irif~sl~~-~~-~~~~~i~~~~ 682 (1165)
T 2qf7_A 621 GAPNLLLQMLLRGANGVGYTNY-----------P--DNVVKYFVRQA---AKGGIDLFRVFDCLNW-VE-NMRVSMDAIA 682 (1165)
T ss_dssp HCTTSEEEEEEETTTBTCSSCC-----------C--HHHHHHHHHHH---HHHTCCEEEEECTTCC-GG-GGHHHHHHHH
T ss_pred HchhhHHHHHhccccccccccC-----------C--chhHHHHHHHH---HhcCcCEEEEEeeHHH-HH-HHHHHHHHHH
Confidence 999854421 1 124455321 1 11222233333 3469998543 33 23 3333444444
Q ss_pred HCCCCCceeechhhhhcccccccchhhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCch
Q 013861 282 AEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPY 361 (435)
Q Consensus 282 ~~Gf~~v~IMSYSaKyASafYGPFRdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~Y 361 (435)
+.|. .| .++.-|...|..|||... +.+..+.-++.=++-|||.|-+.----..+|. .+
T Consensus 683 ~~g~-~v---~~~i~~~~~~~d~~r~~~-----------------~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~~P~-~~ 740 (1165)
T 2qf7_A 683 EENK-LC---EAAICYTGDILNSARPKY-----------------DLKYYTNLAVELEKAGAHIIAVKDMAGLLKPA-AA 740 (1165)
T ss_dssp HTTC-EE---EEEEECCSCTTCTTSGGG-----------------CHHHHHHHHHHHHHTTCSEEEEEETTCCCCHH-HH
T ss_pred hccc-eE---EEEEEEeccccCCCCCCC-----------------CHHHHHHHHHHHHHcCCCEEEEeCccCCcCHH-HH
Confidence 5663 22 222224444555555221 33333333333335699999732211223455 34
Q ss_pred HHHHHHHHhhCCCCeEEEEe
Q 013861 362 LDVIRLLRDKYPLPIAAYQV 381 (435)
Q Consensus 362 LDIIr~vk~~~~lPvaaYqV 381 (435)
-++|+.+|+++++|+. +|-
T Consensus 741 ~~lv~~l~~~~~~~i~-~H~ 759 (1165)
T 2qf7_A 741 KVLFKALREATGLPIH-FHT 759 (1165)
T ss_dssp HHHHHHHHHHCSSCEE-EEE
T ss_pred HHHHHHHHHhcCCeEE-EEE
Confidence 6899999999999884 454
No 116
>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A*
Probab=71.71 E-value=12 Score=36.06 Aligned_cols=43 Identities=23% Similarity=0.282 Sum_probs=30.3
Q ss_pred hHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEeeh
Q 013861 361 YLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILT 420 (435)
Q Consensus 361 YLDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G~ide~~~v~Esl~~ikRAGAd~IiT 420 (435)
.+|+|+.+|+.+++||..=-+ | .| ++ .|....+..+|||.|+.
T Consensus 166 ~~~~i~~vr~~~~~Pv~vK~~-~----------~~-~~-----~~~a~~a~~~Gad~I~v 208 (349)
T 1p0k_A 166 ALKRIEQICSRVSVPVIVKEV-G----------FG-MS-----KASAGKLYEAGAAAVDI 208 (349)
T ss_dssp HHHHHHHHHHHCSSCEEEEEE-S----------SC-CC-----HHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEec-C----------CC-CC-----HHHHHHHHHcCCCEEEE
Confidence 689999999999999986432 1 11 23 23345677889998876
No 117
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=71.54 E-value=7.4 Score=36.42 Aligned_cols=18 Identities=22% Similarity=0.647 Sum_probs=15.8
Q ss_pred hHHHHHHHHhh-CCCCeEE
Q 013861 361 YLDVIRLLRDK-YPLPIAA 378 (435)
Q Consensus 361 YLDIIr~vk~~-~~lPvaa 378 (435)
++++|+++|+. .++||..
T Consensus 81 ~~~~v~~ir~~~~~~Pv~l 99 (268)
T 1qop_A 81 CFEMLAIIREKHPTIPIGL 99 (268)
T ss_dssp HHHHHHHHHHHCSSSCEEE
T ss_pred HHHHHHHHHhcCCCCCEEE
Confidence 57999999999 7999876
No 118
>1eye_A DHPS 1, dihydropteroate synthase I; alpha-beta barrel, transferase; HET: PMM; 1.70A {Mycobacterium tuberculosis H37RV} SCOP: c.1.21.1
Probab=71.33 E-value=8.6 Score=37.13 Aligned_cols=104 Identities=18% Similarity=0.251 Sum_probs=65.4
Q ss_pred cCCC-CCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCc----------hHHHHHHHHhhCCCCeEE
Q 013861 310 DSNP-RFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLP----------YLDVIRLLRDKYPLPIAA 378 (435)
Q Consensus 310 ~Sap-~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~----------YLDIIr~vk~~~~lPvaa 378 (435)
.-+| +|-|-..| .+.++|+..++.-+++|||||=.. |.--.|+.. .+.+|+.+++. ++||..
T Consensus 13 N~TpDSFsdgg~~----~~~~~a~~~a~~~v~~GAdiIDIG--gestrpga~~v~~~eE~~Rv~pvi~~l~~~-~~piSI 85 (280)
T 1eye_A 13 NVTDDSFSDGGCY----LDLDDAVKHGLAMAAAGAGIVDVG--GESSRPGATRVDPAVETSRVIPVVKELAAQ-GITVSI 85 (280)
T ss_dssp ECSCCTTCSSCCC----CSHHHHHHHHHHHHHTTCSEEEEE--CC--------------HHHHHHHHHHHHHT-TCCEEE
T ss_pred eCCCCCcCCCccc----CCHHHHHHHHHHHHHCCCCEEEEC--CccCCCCCCCCCHHHHHHHHHHHHHHhhcC-CCEEEE
Confidence 4456 57665555 367999999999999999999722 323456633 36677777776 888865
Q ss_pred EEechHHHHHHHHHHCC--CCch---hhHHHHHHHHHHHhcccEeehhc
Q 013861 379 YQVSGEYSMIKAGGALK--MIDE---QRVMMESLMCLRRAGADIILTYF 422 (435)
Q Consensus 379 YqVSGEYaMikaAa~~G--~ide---~~~v~Esl~~ikRAGAd~IiTYf 422 (435)
=|=....+++|.++| +|+. .+..-|.+.-+++.|+-+|+...
T Consensus 86 --DT~~~~va~aAl~aGa~iINdvsg~~~d~~m~~~~a~~~~~vVlmh~ 132 (280)
T 1eye_A 86 --DTMRADVARAALQNGAQMVNDVSGGRADPAMGPLLAEADVPWVLMHW 132 (280)
T ss_dssp --ECSCHHHHHHHHHTTCCEEEETTTTSSCTTHHHHHHHHTCCEEEECC
T ss_pred --eCCCHHHHHHHHHcCCCEEEECCCCCCCHHHHHHHHHhCCeEEEEcC
Confidence 234456778888877 3321 11112345566888999999665
No 119
>2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae}
Probab=70.57 E-value=15 Score=37.84 Aligned_cols=125 Identities=14% Similarity=0.132 Sum_probs=75.2
Q ss_pred CCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCC
Q 013861 147 MPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSS 226 (435)
Q Consensus 147 MPGv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTs 226 (435)
+.|.-.+.- +-..+.++.+.+.|+..|-+|..+.+. --+..+|+.+|+.. +.+..++|. ++
T Consensus 91 ~~G~~~~~d-dv~~~~v~~a~~~Gvd~i~if~~~sd~-------------~ni~~~i~~ak~~G--~~v~~~i~~---~~ 151 (464)
T 2nx9_A 91 LLGYRHYAD-DVVDTFVERAVKNGMDVFRVFDAMNDV-------------RNMQQALQAVKKMG--AHAQGTLCY---TT 151 (464)
T ss_dssp TTSSSCCCH-HHHHHHHHHHHHTTCCEEEECCTTCCT-------------HHHHHHHHHHHHTT--CEEEEEEEC---CC
T ss_pred ccCcccccc-hhhHHHHHHHHhCCcCEEEEEEecCHH-------------HHHHHHHHHHHHCC--CEEEEEEEe---ee
Confidence 445444443 235678899999999999999764431 12568899998875 455556632 11
Q ss_pred CCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCc--------hHHHHHHHHHHC-CC--CCceeechhh
Q 013861 227 DGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDG--------RVGAIRAALDAE-GF--QHVSIMSYTA 295 (435)
Q Consensus 227 hGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMMDG--------rVgAIR~aLD~~-Gf--~~v~IMSYSa 295 (435)
. ..- +++.+.+.+-...++|||+|+-.||.=+ .|.++|+.++-. |+ +|+.=|+.+.
T Consensus 152 ~----------~~~---~~e~~~~~a~~l~~~Gad~I~l~DT~G~~~P~~v~~lv~~l~~~~~~~i~~H~Hnd~GlAvAN 218 (464)
T 2nx9_A 152 S----------PVH---NLQTWVDVAQQLAELGVDSIALKDMAGILTPYAAEELVSTLKKQVDVELHLHCHSTAGLADMT 218 (464)
T ss_dssp C----------TTC---CHHHHHHHHHHHHHTTCSEEEEEETTSCCCHHHHHHHHHHHHHHCCSCEEEEECCTTSCHHHH
T ss_pred C----------CCC---CHHHHHHHHHHHHHCCCCEEEEcCCCCCcCHHHHHHHHHHHHHhcCCeEEEEECCCCChHHHH
Confidence 1 111 4566667777778999999999998652 355555554210 11 3344455544
Q ss_pred hhcccccc
Q 013861 296 KYASSFYG 303 (435)
Q Consensus 296 KyASafYG 303 (435)
=.+..-.|
T Consensus 219 ~laAv~AG 226 (464)
T 2nx9_A 219 LLKAIEAG 226 (464)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHhC
Confidence 44444444
No 120
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=70.34 E-value=22 Score=31.07 Aligned_cols=90 Identities=14% Similarity=0.196 Sum_probs=56.8
Q ss_pred CCCCCHHHHHHHHHhcccccccEEecccCCCcccCC-Cc-hHHHHHHHHhh-CCCCeEEEEe--chHHHHHHHHHHCCC-
Q 013861 323 MNPANYREALVEAQADESEGADILLFSVLGSQVKPG-LP-YLDVIRLLRDK-YPLPIAAYQV--SGEYSMIKAGGALKM- 396 (435)
Q Consensus 323 mdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPa-l~-YLDIIr~vk~~-~~lPvaaYqV--SGEYaMikaAa~~G~- 396 (435)
+|+.|.++++..++.= ..|+|++| +|. |- +. =+++|+.+|+. .++|+.+--. -|....++.+.+.|.
T Consensus 7 ~D~~~~~~~~~~~~~~-~~~~diie---~G~---p~~~~~g~~~i~~ir~~~~~~~i~~~~~~~~~~~~~~~~~~~~Gad 79 (211)
T 3f4w_A 7 LDELTLPEAMVFMDKV-VDDVDIIE---VGT---PFLIREGVNAIKAIKEKYPHKEVLADAKIMDGGHFESQLLFDAGAD 79 (211)
T ss_dssp ECSCCHHHHHHHHHHH-GGGCSEEE---ECH---HHHHHHTTHHHHHHHHHCTTSEEEEEEEECSCHHHHHHHHHHTTCS
T ss_pred eCCCCHHHHHHHHHHh-hcCccEEE---eCc---HHHHhccHHHHHHHHHhCCCCEEEEEEEeccchHHHHHHHHhcCCC
Confidence 4778889988877642 36999999 221 21 11 16899999998 4899854221 233335777777773
Q ss_pred ----Cc--hhhHHHHHHHHHHHhcccEee
Q 013861 397 ----ID--EQRVMMESLMCLRRAGADIIL 419 (435)
Q Consensus 397 ----id--e~~~v~Esl~~ikRAGAd~Ii 419 (435)
-+ .++.+-|.+..+++.|..+++
T Consensus 80 ~v~v~~~~~~~~~~~~~~~~~~~g~~~~v 108 (211)
T 3f4w_A 80 YVTVLGVTDVLTIQSCIRAAKEAGKQVVV 108 (211)
T ss_dssp EEEEETTSCHHHHHHHHHHHHHHTCEEEE
T ss_pred EEEEeCCCChhHHHHHHHHHHHcCCeEEE
Confidence 11 123445666667777877764
No 121
>2y5s_A DHPS, dihydropteroate synthase; transferase, folate biosynthesis; HET: 78H; 1.95A {Burkholderia cenocepacia} PDB: 2y5j_A*
Probab=70.30 E-value=6.6 Score=38.30 Aligned_cols=104 Identities=23% Similarity=0.392 Sum_probs=63.0
Q ss_pred hcCCC-CCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCc----------hHHHHHHHHhhCCCCeE
Q 013861 309 LDSNP-RFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLP----------YLDVIRLLRDKYPLPIA 377 (435)
Q Consensus 309 ~~Sap-~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~----------YLDIIr~vk~~~~lPva 377 (435)
+.-+| +|-|--.|+ +.++|+..++.-+++|||||= +=|.--.|+.. .+-+|+.+++. ++||.
T Consensus 29 lNvTPDSFsdgg~~~----~~~~a~~~a~~~v~~GAdiID--IGgeSTrPga~~v~~~eE~~Rv~pvi~~l~~~-~vpiS 101 (294)
T 2y5s_A 29 LNATPDSFSDGGRFL----ARDDALRRAERMIAEGADLLD--IGGESTRPGAPPVPLDEELARVIPLVEALRPL-NVPLS 101 (294)
T ss_dssp EECCC--------------CTTHHHHHHHHHHHTTCSEEE--EESSCCSTTCCCCCHHHHHHHHHHHHHHHGGG-CSCEE
T ss_pred EeCCCCCCCCCCCcC----CHHHHHHHHHHHHHCCCCEEE--ECCCcCCCCCCCCCHHHHHHHHHHHHHHHhhC-CCeEE
Confidence 45567 576766563 668899999999999999997 22323467644 46778888776 88886
Q ss_pred EEEechHHHHHHHHHHCC--CCch---hhHHHHHHHHHHHhcccEeehhc
Q 013861 378 AYQVSGEYSMIKAGGALK--MIDE---QRVMMESLMCLRRAGADIILTYF 422 (435)
Q Consensus 378 aYqVSGEYaMikaAa~~G--~ide---~~~v~Esl~~ikRAGAd~IiTYf 422 (435)
. =|=....+++|.++| +|+. .+ .-|.+.-.++.||-+|+...
T Consensus 102 I--DT~~~~Va~aAl~aGa~iINdVsg~~-d~~m~~~~a~~~~~vVlmh~ 148 (294)
T 2y5s_A 102 I--DTYKPAVMRAALAAGADLINDIWGFR-QPGAIDAVRDGNSGLCAMHM 148 (294)
T ss_dssp E--ECCCHHHHHHHHHHTCSEEEETTTTC-STTHHHHHSSSSCEEEEECC
T ss_pred E--ECCCHHHHHHHHHcCCCEEEECCCCC-chHHHHHHHHhCCCEEEECC
Confidence 5 234456777777766 3331 11 11334456788998888654
No 122
>1q6o_A Humps, 3-keto-L-gulonate 6-phosphate decarboxylase, D-; beta barrel, lyase; HET: LG6; 1.20A {Escherichia coli} SCOP: c.1.2.3 PDB: 1kw1_A* 1q6l_A* 1kv8_A* 1q6q_A* 1q6r_A* 1xbv_A* 1so5_A* 1so4_A* 1xby_A* 1so3_A* 1so6_A* 1xbz_A* 1xbx_A*
Probab=70.13 E-value=11 Score=33.85 Aligned_cols=62 Identities=19% Similarity=0.156 Sum_probs=42.7
Q ss_pred HHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCch-HHHHHHH
Q 013861 201 RTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGR-VGAIRAA 279 (435)
Q Consensus 201 raIr~iK~~~Pdl~IitDVcLc~YTshGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMMDGr-VgAIR~a 279 (435)
..|+.||+.+|+.-|+.|+-|. + +-.|+.. ..+++|||+|.-.--+... +.+.++.
T Consensus 45 ~~i~~l~~~~p~~~v~lD~kl~-------d----------ip~t~~~------~~~~~Gad~itvh~~~g~~~l~~~~~~ 101 (216)
T 1q6o_A 45 RAVRDLKALYPHKIVLADAKIA-------D----------AGKILSR------MCFEANADWVTVICCADINTAKGALDV 101 (216)
T ss_dssp HHHHHHHHHCTTSEEEEEEEEC-------S----------CHHHHHH------HHHHTTCSEEEEETTSCHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCeEEEEEEec-------c----------cHHHHHH------HHHhCCCCEEEEeccCCHHHHHHHHHH
Confidence 4799999999999999998771 1 2334432 5778999999665544433 6666666
Q ss_pred HHHCCC
Q 013861 280 LDAEGF 285 (435)
Q Consensus 280 LD~~Gf 285 (435)
+.+.|-
T Consensus 102 ~~~~g~ 107 (216)
T 1q6o_A 102 AKEFNG 107 (216)
T ss_dssp HHHTTC
T ss_pred HHHcCC
Confidence 666653
No 123
>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*
Probab=70.10 E-value=31 Score=36.84 Aligned_cols=69 Identities=25% Similarity=0.347 Sum_probs=47.1
Q ss_pred hhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecC
Q 013861 156 RHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVRE 235 (435)
Q Consensus 156 ~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTshGHcGIv~e 235 (435)
..+-.+.++.|++.|+.-+.+ +-+ .|.. --+..+|+.||+.||++.||+=-
T Consensus 279 ~~d~~eR~~aLv~AGvD~ivi----D~a----hGhs-----~~v~~~i~~ik~~~p~~~viaGN---------------- 329 (556)
T 4af0_A 279 RPGDKDRLKLLAEAGLDVVVL----DSS----QGNS-----VYQIEFIKWIKQTYPKIDVIAGN---------------- 329 (556)
T ss_dssp SHHHHHHHHHHHHTTCCEEEE----CCS----CCCS-----HHHHHHHHHHHHHCTTSEEEEEE----------------
T ss_pred CccHHHHHHHHHhcCCcEEEE----ecc----cccc-----HHHHHHHHHHHhhCCcceEEecc----------------
Confidence 344688999999999986655 211 1221 23678999999999998887521
Q ss_pred CCccccHHHHHHHHHHHHHHHHcCCCee
Q 013861 236 DGVIMNDETVHQLCKQAVSQARAGADVV 263 (435)
Q Consensus 236 ~g~IdND~Tv~~Lak~Avs~A~AGADiV 263 (435)
|-. .++|..+.+||||.|
T Consensus 330 ---VaT-------~e~a~~Li~aGAD~v 347 (556)
T 4af0_A 330 ---VVT-------REQAAQLIAAGADGL 347 (556)
T ss_dssp ---ECS-------HHHHHHHHHHTCSEE
T ss_pred ---ccC-------HHHHHHHHHcCCCEE
Confidence 111 345666777888887
No 124
>2yr1_A 3-dehydroquinate dehydratase; amino acid biosynthesis, 3-dehydroquinase, structural genomi NPPSFA; 2.00A {Geobacillus kaustophilus}
Probab=69.51 E-value=8.5 Score=36.39 Aligned_cols=98 Identities=15% Similarity=0.160 Sum_probs=62.6
Q ss_pred CCCCHHHHHHHHHhcccccccEEeccc--CCCcccCCCchHHHHHHHHhhC-CCCe-EEEEec---hHH---------HH
Q 013861 324 NPANYREALVEAQADESEGADILLFSV--LGSQVKPGLPYLDVIRLLRDKY-PLPI-AAYQVS---GEY---------SM 387 (435)
Q Consensus 324 dp~N~~EAlre~~~D~~EGADilM~~~--~~~~VKPal~YLDIIr~vk~~~-~lPv-aaYqVS---GEY---------aM 387 (435)
-..+.+|++.++..=.+.|||+|=+-+ |.. +.+.-.-.+.++.+++.. ++|+ +.|.-. |+| ..
T Consensus 27 ~~~~~~e~~~~~~~~~~~~~D~vElRvD~l~~-~~~~~~v~~~l~~lr~~~~~~PiI~T~Rt~~eGG~~~~~~~~~~~~l 105 (257)
T 2yr1_A 27 VGEDDRKVLREAEEVCRKQPDLLEWRADFFRA-IDDQERVLATANGLRNIAGEIPILFTIRSEREGGQPIPLNEAEVRRL 105 (257)
T ss_dssp CCSSHHHHHHHHHHHHHSCCSEEEEEGGGCTT-TTCHHHHHHHHHHHHHHSSSCCEEEECCCTTTTCCCCSSCHHHHHHH
T ss_pred cCCCHHHHHHHHHHHhhcCCCEEEEEeecccc-cCcHHHHHHHHHHHHHhccCCCEEEEEeecccCCCCCCCCHHHHHHH
Confidence 345788888887765778999985221 110 111112355777888887 8995 444322 323 68
Q ss_pred HHHHHHCC---CCchhh----HHHHHHHHHHHhcccEeehhc
Q 013861 388 IKAGGALK---MIDEQR----VMMESLMCLRRAGADIILTYF 422 (435)
Q Consensus 388 ikaAa~~G---~ide~~----~v~Esl~~ikRAGAd~IiTYf 422 (435)
++.+.+.| ++|-+- .+.+.+...++.|..+|++|+
T Consensus 106 l~~~~~~g~~d~iDvEl~~~~~~~~l~~~~~~~~~kvI~S~H 147 (257)
T 2yr1_A 106 IEAICRSGAIDLVDYELAYGERIADVRRMTEECSVWLVVSRH 147 (257)
T ss_dssp HHHHHHHTCCSEEEEEGGGTTHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHHHcCCCCEEEEECCCChhHHHHHHHHHhCCCEEEEEec
Confidence 88899888 666432 344555556788999999998
No 125
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=69.22 E-value=21 Score=27.63 Aligned_cols=66 Identities=17% Similarity=0.221 Sum_probs=45.5
Q ss_pred CCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhh---CCCCeEEEEechHHHHHHHHHHCCCCc
Q 013861 326 ANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDK---YPLPIAAYQVSGEYSMIKAGGALKMID 398 (435)
Q Consensus 326 ~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~---~~lPvaaYqVSGEYaMikaAa~~G~id 398 (435)
.|..||+.... ++..|+++... -=|++.=+++++.+|++ ..+|+....-.++......|.+.|..|
T Consensus 33 ~~~~~al~~l~---~~~~dlvllD~----~~p~~~g~~~~~~l~~~~~~~~~pii~~s~~~~~~~~~~~~~~Ga~~ 101 (122)
T 3gl9_A 33 ENGQIALEKLS---EFTPDLIVLXI----MMPVMDGFTVLKKLQEKEEWKRIPVIVLTAKGGEEDESLALSLGARK 101 (122)
T ss_dssp SSHHHHHHHHT---TBCCSEEEECS----CCSSSCHHHHHHHHHTSTTTTTSCEEEEESCCSHHHHHHHHHTTCSE
T ss_pred CCHHHHHHHHH---hcCCCEEEEec----cCCCCcHHHHHHHHHhcccccCCCEEEEecCCchHHHHHHHhcChhh
Confidence 36778777664 35689988211 13777889999999875 368999877666666666666666543
No 126
>2zbt_A Pyridoxal biosynthesis lyase PDXS; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.65A {Thermus thermophilus} PDB: 2iss_A*
Probab=68.04 E-value=7.1 Score=36.62 Aligned_cols=41 Identities=15% Similarity=0.263 Sum_probs=27.4
Q ss_pred hHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCC-chhhHHHHHHHHHHHhcccEee
Q 013861 361 YLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMI-DEQRVMMESLMCLRRAGADIIL 419 (435)
Q Consensus 361 YLDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G~i-de~~~v~Esl~~ikRAGAd~Ii 419 (435)
-++.|+++++..++|+.- .++ |-+ +. |.+..+..+|||.++
T Consensus 195 ~~~~i~~l~~~~~~pvi~-~a~------------GGI~~~-----e~i~~~~~aGadgvv 236 (297)
T 2zbt_A 195 PFELVKWVHDHGRLPVVN-FAA------------GGIATP-----ADAALMMHLGMDGVF 236 (297)
T ss_dssp CHHHHHHHHHHSSCSSCE-EBC------------SSCCSH-----HHHHHHHHTTCSEEE
T ss_pred hHHHHHHHHHhcCCCcEE-Eee------------CCCCCH-----HHHHHHHHcCCCEEE
Confidence 478899999988899752 133 334 33 455566778888765
No 127
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=67.86 E-value=20 Score=27.72 Aligned_cols=67 Identities=19% Similarity=0.091 Sum_probs=47.3
Q ss_pred CCCHHHHHHHHHhcccccccEEecccCCCcccC-CCchHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCc
Q 013861 325 PANYREALVEAQADESEGADILLFSVLGSQVKP-GLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMID 398 (435)
Q Consensus 325 p~N~~EAlre~~~D~~EGADilM~~~~~~~VKP-al~YLDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G~id 398 (435)
..+..||+..... +..|+|++. .. -| .+.-+++++.+++...+|+..+--..+...+..+.+.|..+
T Consensus 40 ~~~~~~a~~~~~~---~~~dlii~d---~~-~~~~~~g~~~~~~l~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~ 107 (140)
T 3cg0_A 40 FDNGEEAVRCAPD---LRPDIALVD---IM-LCGALDGVETAARLAAGCNLPIIFITSSQDVETFQRAKRVNPFG 107 (140)
T ss_dssp ESSHHHHHHHHHH---HCCSEEEEE---SS-CCSSSCHHHHHHHHHHHSCCCEEEEECCCCHHHHHHHHTTCCSE
T ss_pred ECCHHHHHHHHHh---CCCCEEEEe---cC-CCCCCCHHHHHHHHHhCCCCCEEEEecCCCHHHHHHHHhcCCCE
Confidence 3467777776654 358999821 11 14 57789999999988779999987777776666666766544
No 128
>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5
Probab=67.77 E-value=12 Score=33.40 Aligned_cols=61 Identities=20% Similarity=0.187 Sum_probs=37.9
Q ss_pred ccccccEE---ecccC-CCcccCCCchHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhc
Q 013861 339 ESEGADIL---LFSVL-GSQVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAG 414 (435)
Q Consensus 339 ~~EGADil---M~~~~-~~~VKPal~YLDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G~ide~~~v~Esl~~ikRAG 414 (435)
++.|||+| ++.+. +++ +...+-++.++++++. ++||.+ .|-++. .|.+..+..+|
T Consensus 150 ~~~Gad~i~~~v~g~~~~~~-~~~~~~~~~i~~~~~~-~ipvia---------------~GGI~s----~~~~~~~~~~G 208 (234)
T 1yxy_A 150 HQAGIDFVGTTLSGYTPYSR-QEAGPDVALIEALCKA-GIAVIA---------------EGKIHS----PEEAKKINDLG 208 (234)
T ss_dssp HHTTCSEEECTTTTSSTTSC-CSSSCCHHHHHHHHHT-TCCEEE---------------ESCCCS----HHHHHHHHTTC
T ss_pred HHcCCCEEeeeccccCCCCc-CCCCCCHHHHHHHHhC-CCCEEE---------------ECCCCC----HHHHHHHHHCC
Confidence 46799999 32222 221 1123457889999988 899865 445552 23344566789
Q ss_pred ccEeeh
Q 013861 415 ADIILT 420 (435)
Q Consensus 415 Ad~IiT 420 (435)
||.++.
T Consensus 209 ad~v~v 214 (234)
T 1yxy_A 209 VAGIVV 214 (234)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 998863
No 129
>4hb7_A Dihydropteroate synthase; transferase; 1.95A {Staphylococcus aureus} PDB: 1ad1_A 1ad4_A*
Probab=67.40 E-value=6.6 Score=38.22 Aligned_cols=101 Identities=26% Similarity=0.395 Sum_probs=56.8
Q ss_pred hcCCC-CCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCch----------HHHHHHHHhhCCCCeE
Q 013861 309 LDSNP-RFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPY----------LDVIRLLRDKYPLPIA 377 (435)
Q Consensus 309 ~~Sap-~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~Y----------LDIIr~vk~~~~lPva 377 (435)
+.-+| +|-|--.|+ +.+.|++.++.=++||||||= +=|.-=+|+-.. +-+|+.+++ .++|+.
T Consensus 13 lNvTPDSFsDGG~~~----~~~~a~~~a~~m~~~GAdiID--IGgeSTRPga~~vs~eeE~~Rv~pvi~~l~~-~~v~iS 85 (270)
T 4hb7_A 13 LNVTPDSFSDGGKFN----NVETAINRVKAMIDEGADIID--VGGVSTRPGHEMVTLEEELNRVLPVVEAIVG-FDVKIS 85 (270)
T ss_dssp EECC----------C----HHHHHHHHHHHHHHTTCSEEE--EESCCCSTTCCCCCHHHHHHHHHHHHHHHTT-SSSEEE
T ss_pred EeCCCCCCCCCCCCC----CHHHHHHHHHHHHHCCCCEEE--ECCccCCCCCCCCchHHHHHHHHHHHHHhhc-CCCeEE
Confidence 34455 365555553 678899999999999999987 333334888766 567777764 677766
Q ss_pred EEEechHHHHHHHHHHCCC--Cch------hhHHHHHHHHHHHhcccEeehh
Q 013861 378 AYQVSGEYSMIKAGGALKM--IDE------QRVMMESLMCLRRAGADIILTY 421 (435)
Q Consensus 378 aYqVSGEYaMikaAa~~G~--ide------~~~v~Esl~~ikRAGAd~IiTY 421 (435)
.=--.- ...++|.++|. ||. +. |.+.-+.+.|+-+|+.+
T Consensus 86 IDT~~~--~Va~~al~aGa~iINDVs~g~~d~---~m~~~va~~~~~~vlMH 132 (270)
T 4hb7_A 86 VDTFRS--EVAEACLKLGVDMINDQWAGLYDH---RMFQIVAKYDAEIILMH 132 (270)
T ss_dssp EECSCH--HHHHHHHHHTCCEEEETTTTSSCT---HHHHHHHHTTCEEEEEC
T ss_pred EECCCH--HHHHHHHHhccceeccccccccch---hHHHHHHHcCCCeEEec
Confidence 433222 34455555442 221 12 33344566788888753
No 130
>3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A*
Probab=67.19 E-value=5.6 Score=39.64 Aligned_cols=96 Identities=17% Similarity=0.124 Sum_probs=57.8
Q ss_pred hhhhcCCCCCCCccccCCCC-CCHHHHHHHHHhcccccccEEecccCCCcccCC-Cc-----hHHHHHHHHhhCCCCeEE
Q 013861 306 REALDSNPRFGDKKTYQMNP-ANYREALVEAQADESEGADILLFSVLGSQVKPG-LP-----YLDVIRLLRDKYPLPIAA 378 (435)
Q Consensus 306 RdA~~Sap~fgDRktYQmdp-~N~~EAlre~~~D~~EGADilM~~~~~~~VKPa-l~-----YLDIIr~vk~~~~lPvaa 378 (435)
|+.+...|.++.--..|+.+ .+.++ ++++...++.||..|=+..+-..+.|. -. ++|+|+.+++.+++||.+
T Consensus 114 r~~ap~~~~~anlg~~ql~~~~~~~~-~~~av~~~~a~al~Ihln~~~~~~~p~g~~~~~~~~~~~i~~i~~~~~vPViv 192 (368)
T 3vkj_A 114 RKVAPTIPIIANLGMPQLVKGYGLKE-FQDAIQMIEADAIAVHLNPAQEVFQPEGEPEYQIYALEKLRDISKELSVPIIV 192 (368)
T ss_dssp HHHCSSSCEEEEEEGGGGGTTCCHHH-HHHHHHHTTCSEEEEECCHHHHHHSSSCCCBCBTHHHHHHHHHHTTCSSCEEE
T ss_pred HHhCcCcceecCcCeeecCCCCCHHH-HHHHHHHhcCCCeEEEecchhhhhCCCCCchhhHHHHHHHHHHHHHcCCCEEE
Confidence 54444555566666778876 44444 555555556666665422222223443 23 799999999999999987
Q ss_pred EEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEee
Q 013861 379 YQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIIL 419 (435)
Q Consensus 379 YqVSGEYaMikaAa~~G~ide~~~v~Esl~~ikRAGAd~Ii 419 (435)
=.| ||--. .|....+..+|||.|.
T Consensus 193 K~v-------------G~g~s----~~~A~~l~~aGad~I~ 216 (368)
T 3vkj_A 193 KES-------------GNGIS----METAKLLYSYGIKNFD 216 (368)
T ss_dssp ECS-------------SSCCC----HHHHHHHHHTTCCEEE
T ss_pred EeC-------------CCCCC----HHHHHHHHhCCCCEEE
Confidence 544 11111 2445566788888875
No 131
>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}
Probab=66.89 E-value=7.9 Score=37.39 Aligned_cols=113 Identities=10% Similarity=0.059 Sum_probs=70.2
Q ss_pred CCCccccHHHHHHHHHHHHHHHHcCCCeecCCCC------C--CchHHHHHHHHHHCCCCCceeechhhhhcccccccch
Q 013861 235 EDGVIMNDETVHQLCKQAVSQARAGADVVSPSDM------M--DGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFR 306 (435)
Q Consensus 235 e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDM------M--DGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFR 306 (435)
+||.|| -+.++.|+ --+.++|+|-|.+.+. | +=|...|+.+.+..+ .+++|+.=..
T Consensus 26 ~dg~iD-~~~l~~lv---~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~vi~~~~~~~~-grvpViaGvg----------- 89 (314)
T 3d0c_A 26 GTREID-WKGLDDNV---EFLLQNGIEVIVPNGNTGEFYALTIEEAKQVATRVTELVN-GRATVVAGIG----------- 89 (314)
T ss_dssp TTCCBC-HHHHHHHH---HHHHHTTCSEECTTSGGGTGGGSCHHHHHHHHHHHHHHHT-TSSEEEEEEC-----------
T ss_pred CCCCCC-HHHHHHHH---HHHHHcCCCEEEECcccCChhhCCHHHHHHHHHHHHHHhC-CCCeEEecCC-----------
Confidence 457776 33444444 3456789998877652 2 347777888887765 4777776322
Q ss_pred hhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCc-hHHHHHHHHhhCCCCeEEEEech
Q 013861 307 EALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLP-YLDVIRLLRDKYPLPIAAYQVSG 383 (435)
Q Consensus 307 dA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~-YLDIIr~vk~~~~lPvaaYqVSG 383 (435)
- |.+|++..++.=.+-|||.+|. +--...||..- ..+=.+.+.+.+++||..|+.+|
T Consensus 90 ------------------~-st~~ai~la~~A~~~Gadavlv-~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~tg 147 (314)
T 3d0c_A 90 ------------------Y-SVDTAIELGKSAIDSGADCVMI-HQPVHPYITDAGAVEYYRNIIEALDAPSIIYFKDA 147 (314)
T ss_dssp ------------------S-SHHHHHHHHHHHHHTTCSEEEE-CCCCCSCCCHHHHHHHHHHHHHHSSSCEEEEECCT
T ss_pred ------------------c-CHHHHHHHHHHHHHcCCCEEEE-CCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 1 3457777777666779999991 11111222210 13444567788899999999766
No 132
>2h9a_B CO dehydrogenase/acetyl-COA synthase, iron- sulfur protein; heterodimer, beta-alpha-barrels, oxidoreductase; HET: B12; 1.90A {Carboxydothermus hydrogenoformans} PDB: 2ycl_B*
Probab=66.77 E-value=22 Score=34.89 Aligned_cols=117 Identities=15% Similarity=0.198 Sum_probs=74.1
Q ss_pred ccccccch---hhhcCCC-CCCCc--cccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCch------HHHHH
Q 013861 299 SSFYGPFR---EALDSNP-RFGDK--KTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPY------LDVIR 366 (435)
Q Consensus 299 SafYGPFR---dA~~Sap-~fgDR--ktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~Y------LDIIr 366 (435)
-.||.|-+ +.++-+| +|-|- ..|. ++- +.++..+..=+++|||||=. =|.--.|+... +++|+
T Consensus 41 ~~~~~~p~i~m~I~n~tpdsf~d~i~~~~~-~~~--~~~~~~A~~~v~~GAdiIDI--g~~StrP~~~~vs~eee~~vV~ 115 (310)
T 2h9a_B 41 GEMPNPPRFALEVFDTPPTDWPDILVEPFK-DVI--NDPVAWAKKCVEYGADIVAL--RLVSAHPDGQNRSGAELAEVCK 115 (310)
T ss_dssp SCCCSCCEEEEEEESSCCSSCCHHHHGGGT-TTT--TCHHHHHHHHHHTTCSEEEE--ECGGGCTTTTCCCHHHHHHHHH
T ss_pred cCCCCCCeEEEEEeeCCCcccchhhhhhhc-cHH--HHHHHHHHHHHHcCCcEEEE--eCccCCCCCCCCCHHHHHHHHH
Confidence 45666666 5667777 57654 5553 220 34555666666999999982 22125676432 88999
Q ss_pred HHHhhCCCCeEEEEec----hHHHHHHHHHHCCC-----Cch---hhHHHHHHHHHHHhcccEeehhc
Q 013861 367 LLRDKYPLPIAAYQVS----GEYSMIKAGGALKM-----IDE---QRVMMESLMCLRRAGADIILTYF 422 (435)
Q Consensus 367 ~vk~~~~lPvaaYqVS----GEYaMikaAa~~G~-----ide---~~~v~Esl~~ikRAGAd~IiTYf 422 (435)
.+++.+++|+..+- | =.-..+++|.+.|. |+. + -.-+.+...++.|+-+|+...
T Consensus 116 ~v~~~~~vplsI~D-T~~~~~~~~V~eaal~aga~~k~iINdvs~~-~~~~~~~~aa~~g~~vv~m~~ 181 (310)
T 2h9a_B 116 AVADAIDVPLMIIG-CGVEEKDAEIFPVIGEALSGRNCLLSSATKD-NYKPIVATCMVHGHSVVASAP 181 (310)
T ss_dssp HHHHHCSSCEEEEC-CSCHHHHHHHHHHHHHHTTTSCCEEEEECTT-THHHHHHHHHHHTCEEEEECS
T ss_pred HHHHhCCceEEEEC-CCCCCCCHHHHHHHHHhCCCCCCEEEECCCC-ccHHHHHHHHHhCCCEEEECh
Confidence 99999999997622 2 34466777776653 431 2 133455566888999988765
No 133
>1w8s_A FBP aldolase, fructose-bisphosphate aldolase class I; TIM barrel, glycolytic, archaeal, catalytic mechanism, reaction intermediate, lyase; HET: FBP; 1.85A {Thermoproteus tenax} SCOP: c.1.10.1 PDB: 1w8r_A* 2yce_A* 1ojx_A 1ok4_A 1ok6_A
Probab=66.37 E-value=48 Score=31.09 Aligned_cols=114 Identities=17% Similarity=0.131 Sum_probs=70.7
Q ss_pred HcCCCeecCCCCCC----c-------hHHHHHHHHHHCCCCCceeechhhhhcccccccchhhhcCCCCCCCccccCCCC
Q 013861 257 RAGADVVSPSDMMD----G-------RVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNP 325 (435)
Q Consensus 257 ~AGADiVAPSDMMD----G-------rVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRdA~~Sap~fgDRktYQmdp 325 (435)
+.|||.| ||.. + .+.+++++..+.|. .+-|++|.- |+ .+++. .++
T Consensus 103 ~~Ga~~v---~~~~nig~~~~~~~~~~~~~v~~~~~~~~~-~vIi~~~~~-------G~---------~~~~~----~s~ 158 (263)
T 1w8s_A 103 SLGASAV---GYTIYPGSGFEWKMFEELARIKRDAVKFDL-PLVVESFPR-------GG---------KVVNE----TAP 158 (263)
T ss_dssp HTTCSEE---EEEECTTSTTHHHHHHHHHHHHHHHHHHTC-CEEEEECCC-------ST---------TCCCT----TCH
T ss_pred HCCCCEE---EEEEecCCcCHHHHHHHHHHHHHHHHHcCC-eEEEEeeCC-------CC---------ccccC----CCH
Confidence 6799988 3322 1 34677777777776 477887641 21 22221 122
Q ss_pred CCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhCCC-CeEEEEechHHHHHHHHHHCCCCc--hhhH
Q 013861 326 ANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPL-PIAAYQVSGEYSMIKAGGALKMID--EQRV 402 (435)
Q Consensus 326 ~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~~l-PvaaYqVSGEYaMikaAa~~G~id--e~~~ 402 (435)
.+..++ ++.=.+.|||+|=++. |+ =++-++++++..++ ||.+ .|-+. ..+-
T Consensus 159 ~~i~~a---~~~a~~~GAD~vkt~~------~~--~~e~~~~~~~~~~~~pV~a---------------sGGi~~~~~~~ 212 (263)
T 1w8s_A 159 EIVAYA---ARIALELGADAMKIKY------TG--DPKTFSWAVKVAGKVPVLM---------------SGGPKTKTEED 212 (263)
T ss_dssp HHHHHH---HHHHHHHTCSEEEEEC------CS--SHHHHHHHHHHTTTSCEEE---------------ECCSCCSSHHH
T ss_pred HHHHHH---HHHHHHcCCCEEEEcC------CC--CHHHHHHHHHhCCCCeEEE---------------EeCCCCCCHHH
Confidence 222222 3444468999998442 21 46889999988876 9765 34444 3456
Q ss_pred HHHHHHHHHHhcccEeeh
Q 013861 403 MMESLMCLRRAGADIILT 420 (435)
Q Consensus 403 v~Esl~~ikRAGAd~IiT 420 (435)
++|.+....+|||+.+..
T Consensus 213 ~l~~i~~~~~aGA~Gvsv 230 (263)
T 1w8s_A 213 FLKQVEGVLEAGALGIAV 230 (263)
T ss_dssp HHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHcCCeEEEE
Confidence 788888888999997763
No 134
>3t7v_A Methylornithine synthase PYLB; TIM-barrel fold, mutase, [4Fe-4S]-cluster, SAM, lysine, transferase; HET: SAM MD0; 1.50A {Methanosarcina barkeri}
Probab=66.33 E-value=29 Score=32.95 Aligned_cols=56 Identities=13% Similarity=0.371 Sum_probs=36.0
Q ss_pred ccccCCCCCCHHHHHHHHHhcccccccEEecccCCCc---ccCCCchHHHHHHHHhhCCCCeE
Q 013861 318 KKTYQMNPANYREALVEAQADESEGADILLFSVLGSQ---VKPGLPYLDVIRLLRDKYPLPIA 377 (435)
Q Consensus 318 RktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~---VKPal~YLDIIr~vk~~~~lPva 377 (435)
.+.|.+ ..+|.+.++..-.+.|..-+.| .-|.. .++.--++|+++.+|+.+++++.
T Consensus 86 ~~~~~l---s~eei~~~~~~~~~~G~~~i~l-~gGe~p~~~~~~~~~~~l~~~ik~~~~i~i~ 144 (350)
T 3t7v_A 86 INRYRL---TMEEIKETCKTLKGAGFHMVDL-TMGEDPYYYEDPNRFVELVQIVKEELGLPIM 144 (350)
T ss_dssp CCCCBC---CHHHHHHHHHHHTTSCCSEEEE-EECCCHHHHHSTHHHHHHHHHHHHHHCSCEE
T ss_pred CCceeC---CHHHHHHHHHHHHHCCCCEEEE-eeCCCCccccCHHHHHHHHHHHHhhcCceEE
Confidence 345666 4566666666656789988775 22331 11233459999999998887764
No 135
>2eq5_A 228AA long hypothetical hydantoin racemase; structural genomics, NPPSFA, national project on P structural and functional analyses; 2.20A {Pyrococcus horikoshii}
Probab=66.12 E-value=38 Score=30.06 Aligned_cols=156 Identities=17% Similarity=0.238 Sum_probs=82.9
Q ss_pred HHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHH-------
Q 013861 202 TIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVG------- 274 (435)
Q Consensus 202 aIr~iK~~~Pdl~IitDVcLc~YTshGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMMDGrVg------- 274 (435)
..+.|++..|+..++. .-.||.. ..+ ++..+-......+.+.+..+.++|+|.|.-..--+--+.
T Consensus 26 ~~~~~~~~~p~~~i~~--~~~p~g~---~~~---~~~~~~~~~~~~l~~~~~~l~~~g~d~iviaCnta~~~~~l~~~~~ 97 (228)
T 2eq5_A 26 HGRIIESAFPELKVVS--RCIEDQP---KGI---YNEETEREAEPKIIRLAKEFEREGVDAIIISCAADPAVEKVRKLLS 97 (228)
T ss_dssp HHHHHHHHCTTEEEEE--EECSSCT---TCC---SSHHHHHHHHHHHHHHHHHHHHTTCSEEEECSTTCTTHHHHHHHCS
T ss_pred HHHHHHhhCCCCeEEE--EeCCCCc---hhc---cccccHHHhHHHHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhCC
Confidence 4567888899988777 3236632 111 122223334456777777778899999876654442222
Q ss_pred ---------HHHHHHHHCCCCCceeechhhhhcccccccc-hhh-hc-CCCCCCCccccCCCCCCHHHHHHHHHhcc-cc
Q 013861 275 ---------AIRAALDAEGFQHVSIMSYTAKYASSFYGPF-REA-LD-SNPRFGDKKTYQMNPANYREALVEAQADE-SE 341 (435)
Q Consensus 275 ---------AIR~aLD~~Gf~~v~IMSYSaKyASafYGPF-RdA-~~-Sap~fgDRktYQmdp~N~~EAlre~~~D~-~E 341 (435)
+++.++ ..| .+++|++=...-.+.|..-| ++. .+ ..+.+.+ -.+++-...++.+++....+ ++
T Consensus 98 iPvi~i~~~~~~~a~-~~~-~rigVlat~~t~~~~~~~~~~~~~g~~~~~~~~~~--v~~~~~~~~~~~l~~~~~~l~~~ 173 (228)
T 2eq5_A 98 IPVIGAGSSVSALAL-AYG-RRVGVLNLTEETPKVIRSILGNNLIAEDHPSGVSN--TLDLLTDWGRREVINAAKRLKEK 173 (228)
T ss_dssp SCEEEHHHHHHHHHH-TTC-SSEEEECSSSCCCHHHHHHHGGGEEEEECCTTCCS--GGGGGSHHHHHHHHHHHHHHHHT
T ss_pred CCEeCccHHHHHHHH-HhC-CeEEEEecCcccHHHHHHHHHHHhCccccCCceee--HHHhcChHHHHHHHHHHHHHHHc
Confidence 333443 345 78888875443333221222 110 01 1222322 22222112456666666655 36
Q ss_pred cccEEecccCCCcccCCCchH--HHHHHHHhhCCCCeE
Q 013861 342 GADILLFSVLGSQVKPGLPYL--DVIRLLRDKYPLPIA 377 (435)
Q Consensus 342 GADilM~~~~~~~VKPal~YL--DIIr~vk~~~~lPva 377 (435)
|+|.|+ ||- ..|- .+...+++.+++||.
T Consensus 174 ~~d~Iv---LgC-----T~~~t~~~~~~i~~~~~vpvi 203 (228)
T 2eq5_A 174 GVEVIA---LGC-----TGMSTIGIAPVLEEEVGIPVI 203 (228)
T ss_dssp TCSEEE---ECC-----THHHHHTCHHHHHHHHSSCEE
T ss_pred CCCEEE---ECC-----CCcchHHHHHHHHHHcCCCEE
Confidence 999998 332 2344 666677766788874
No 136
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}
Probab=66.06 E-value=8.2 Score=39.11 Aligned_cols=57 Identities=23% Similarity=0.343 Sum_probs=38.8
Q ss_pred cccccEEec-ccCCCcccCCCchHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEe
Q 013861 340 SEGADILLF-SVLGSQVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADII 418 (435)
Q Consensus 340 ~EGADilM~-~~~~~~VKPal~YLDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G~ide~~~v~Esl~~ikRAGAd~I 418 (435)
++|+|+|.+ +..| .| ..++|+|+.+|+.+++||.+=+|+ + .|....+.++|||+|
T Consensus 154 eaGvdvIvldta~G---~~-~~~~e~I~~ik~~~~i~Vi~g~V~---------------t-----~e~A~~a~~aGAD~I 209 (400)
T 3ffs_A 154 EAGVDVIVLDSAHG---HS-LNIIRTLKEIKSKMNIDVIVGNVV---------------T-----EEATKELIENGADGI 209 (400)
T ss_dssp HHTCSEEEECCSCC---SB-HHHHHHHHHHHTTCCCEEEEEEEC---------------S-----HHHHHHHHHTTCSEE
T ss_pred HcCCCEEEEeCCCC---Cc-ccHHHHHHHHHhcCCCeEEEeecC---------------C-----HHHHHHHHHcCCCEE
Confidence 679999983 2222 12 246899999999999999875552 2 223344567899988
Q ss_pred eh
Q 013861 419 LT 420 (435)
Q Consensus 419 iT 420 (435)
+.
T Consensus 210 ~v 211 (400)
T 3ffs_A 210 KV 211 (400)
T ss_dssp EE
T ss_pred EE
Confidence 76
No 137
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=65.84 E-value=19 Score=27.68 Aligned_cols=62 Identities=15% Similarity=0.206 Sum_probs=36.6
Q ss_pred CHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhC-CCCeEEEEechHHHHHHHHHHCC
Q 013861 327 NYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALK 395 (435)
Q Consensus 327 N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~-~lPvaaYqVSGEYaMikaAa~~G 395 (435)
|..||+.... ++.-|+|+... --|.+.-+++++.+|+.. .+|+...--..+......+.+.|
T Consensus 39 ~~~~a~~~l~---~~~~dlvi~d~----~l~~~~g~~~~~~l~~~~~~~~ii~~t~~~~~~~~~~~~~~g 101 (130)
T 3eod_A 39 DGVDALELLG---GFTPDLMICDI----AMPRMNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLG 101 (130)
T ss_dssp CHHHHHHHHT---TCCCSEEEECC----C-----CHHHHHHHHHTTCCCCEEEEECCCCHHHHHHHHHHC
T ss_pred CHHHHHHHHh---cCCCCEEEEec----CCCCCCHHHHHHHHHhcCCCCCEEEEEcCCCHHHHHHHHHcC
Confidence 6677777663 34589998211 116677899999999876 59998876544444433333333
No 138
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=65.50 E-value=45 Score=25.78 Aligned_cols=68 Identities=15% Similarity=0.160 Sum_probs=45.2
Q ss_pred CHHHHHHHHHhccc-------ccccEEecccCCCcccCCCchHHHHHHHHhhC---CCCeEEEEechHHHHHHHHHHCCC
Q 013861 327 NYREALVEAQADES-------EGADILLFSVLGSQVKPGLPYLDVIRLLRDKY---PLPIAAYQVSGEYSMIKAGGALKM 396 (435)
Q Consensus 327 N~~EAlre~~~D~~-------EGADilM~~~~~~~VKPal~YLDIIr~vk~~~---~lPvaaYqVSGEYaMikaAa~~G~ 396 (435)
|..||+......-. +..|+|+... --|.+.-+++++.+|+.. .+|+..+--+.+-..+..+.+.|.
T Consensus 40 ~~~~al~~l~~~~~~~~~~~~~~~dlvi~D~----~l~~~~g~~~~~~l~~~~~~~~~~ii~~t~~~~~~~~~~~~~~g~ 115 (149)
T 1k66_A 40 TGDQALDFLYQTGSYCNPDIAPRPAVILLDL----NLPGTDGREVLQEIKQDEVLKKIPVVIMTTSSNPKDIEICYSYSI 115 (149)
T ss_dssp SHHHHHHHHHTCCSSSCGGGCCCCSEEEECS----CCSSSCHHHHHHHHTTSTTGGGSCEEEEESCCCHHHHHHHHHTTC
T ss_pred CHHHHHHHHHhcccccCcccCCCCcEEEEEC----CCCCCCHHHHHHHHHhCcccCCCeEEEEeCCCCHHHHHHHHHCCC
Confidence 66777776654211 4579998211 126677899999999874 699999876666556666666665
Q ss_pred Cc
Q 013861 397 ID 398 (435)
Q Consensus 397 id 398 (435)
.+
T Consensus 116 ~~ 117 (149)
T 1k66_A 116 SS 117 (149)
T ss_dssp SE
T ss_pred CE
Confidence 44
No 139
>4h3d_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, aldolase class I; HET: PGE SHL; 1.95A {Clostridium difficile} PDB: 3js3_A*
Probab=65.47 E-value=17 Score=34.32 Aligned_cols=98 Identities=19% Similarity=0.253 Sum_probs=61.3
Q ss_pred CCCHHHHHHHHHhcccccccEEeccc-CCCcccCCCchHHHHHHHHhhC-CCCeE-EEEe---------ch-HH-HHHHH
Q 013861 325 PANYREALVEAQADESEGADILLFSV-LGSQVKPGLPYLDVIRLLRDKY-PLPIA-AYQV---------SG-EY-SMIKA 390 (435)
Q Consensus 325 p~N~~EAlre~~~D~~EGADilM~~~-~~~~VKPal~YLDIIr~vk~~~-~lPva-aYqV---------SG-EY-aMika 390 (435)
..+.+|.+.++..=.+.|||+|=+-+ +=..+.+--.-.+.+..+|+.. ++|+. .|-- |- || ..++.
T Consensus 28 ~~t~~e~l~~a~~~~~~~aD~vElR~D~l~~~~~~~~v~~~l~~lr~~~~~lPiI~T~Rt~~EGG~~~~~~~~~~~ll~~ 107 (258)
T 4h3d_A 28 GKNKKDIIKEAKELKDACLDIIEWRVDFFENVENIKEVKEVLYELRSYIHDIPLLFTFRSVVEGGEKLISRDYYTTLNKE 107 (258)
T ss_dssp CSSHHHHHHHHHHHTTSSCSEEEEEGGGCTTTTCHHHHHHHHHHHHHHCTTSCEEEECCCGGGTCSCCCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhhcCCCEEEEeeccccccCCHHHHHHHHHHHHHhcCCCCEEEEEechhhCCCCCCCHHHHHHHHHH
Confidence 45788999999887789999986211 0001111112345677888876 68975 4443 32 23 45677
Q ss_pred HHHCC---CCchh-----hHHHHHHHHHHHhcccEeehhc
Q 013861 391 GGALK---MIDEQ-----RVMMESLMCLRRAGADIILTYF 422 (435)
Q Consensus 391 Aa~~G---~ide~-----~~v~Esl~~ikRAGAd~IiTYf 422 (435)
+++.| |+|-+ +.+-+.+...++.|..+|++|+
T Consensus 108 ~~~~~~~d~iDvEl~~~~~~~~~l~~~a~~~~~kiI~S~H 147 (258)
T 4h3d_A 108 ISNTGLVDLIDVELFMGDEVIDEVVNFAHKKEVKVIISNH 147 (258)
T ss_dssp HHHTTCCSEEEEEGGGCHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHhcCCchhhHHhhhccHHHHHHHHHHHHhCCCEEEEEEe
Confidence 88887 45543 3444444456788999999997
No 140
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=65.39 E-value=6 Score=40.66 Aligned_cols=54 Identities=30% Similarity=0.371 Sum_probs=38.9
Q ss_pred ccccccEEecccCCCcccCCC----chHHHHHHHHhhC-CCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHh
Q 013861 339 ESEGADILLFSVLGSQVKPGL----PYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRA 413 (435)
Q Consensus 339 ~~EGADilM~~~~~~~VKPal----~YLDIIr~vk~~~-~lPvaaYqVSGEYaMikaAa~~G~ide~~~v~Esl~~ikRA 413 (435)
++.|+|+|. +--+. ..+|+|+++|+.+ ++||.+-+|. + .|....+..|
T Consensus 240 ~~aG~d~I~-------id~a~g~~~~~~~~i~~ir~~~p~~~Vi~g~v~---------------t-----~e~a~~l~~a 292 (496)
T 4fxs_A 240 VEAGVDVLL-------IDSSHGHSEGVLQRIRETRAAYPHLEIIGGNVA---------------T-----AEGARALIEA 292 (496)
T ss_dssp HHTTCSEEE-------EECSCTTSHHHHHHHHHHHHHCTTCCEEEEEEC---------------S-----HHHHHHHHHH
T ss_pred HhccCceEE-------eccccccchHHHHHHHHHHHHCCCceEEEcccC---------------c-----HHHHHHHHHh
Confidence 356999998 43332 3579999999999 7999986552 1 1334556778
Q ss_pred cccEee
Q 013861 414 GADIIL 419 (435)
Q Consensus 414 GAd~Ii 419 (435)
|||.|+
T Consensus 293 GaD~I~ 298 (496)
T 4fxs_A 293 GVSAVK 298 (496)
T ss_dssp TCSEEE
T ss_pred CCCEEE
Confidence 999987
No 141
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=65.37 E-value=41 Score=31.27 Aligned_cols=120 Identities=13% Similarity=0.220 Sum_probs=66.6
Q ss_pred CCceeechhhhhcccccccchhhhcCCCCCCCccccCCCC--CCHHHHHHHHHhccc-ccccEEecccCCCcccCCCchH
Q 013861 286 QHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNP--ANYREALVEAQADES-EGADILLFSVLGSQVKPGLPYL 362 (435)
Q Consensus 286 ~~v~IMSYSaKyASafYGPFRdA~~Sap~fgDRktYQmdp--~N~~EAlre~~~D~~-EGADilM~~~~~~~VKPal~YL 362 (435)
.-+-|++|+- +..-|++++. .++.+- .+.. ++.+|++..+..=++ +|+|+++ | .+.--
T Consensus 14 ~ii~i~~~~~-----L~~~~~~i~~---e~~~~~--~I~vi~~~le~av~~a~~~~~~~~~dVII-S--------RGgta 74 (225)
T 2pju_A 14 PVIWTVSVTR-----LFELFRDISL---EFDHLA--NITPIQLGFEKAVTYIRKKLANERCDAII-A--------AGSNG 74 (225)
T ss_dssp CEEEEECCHH-----HHHHHHHHHT---TTTTTC--EEEEECCCHHHHHHHHHHHTTTSCCSEEE-E--------EHHHH
T ss_pred CEEEEEchHH-----HHHHHHHHHH---hhCCCc--eEEEecCcHHHHHHHHHHHHhcCCCeEEE-e--------CChHH
Confidence 3456777754 5567788774 222221 2334 678999998877566 5799998 1 11122
Q ss_pred HHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCC--------------------------------CchhhHHHHHHHHH
Q 013861 363 DVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKM--------------------------------IDEQRVMMESLMCL 410 (435)
Q Consensus 363 DIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G~--------------------------------ide~~~v~Esl~~i 410 (435)
+.| |+.+++||.--++|| |-++++-.++.- ++..+-+-+.+..+
T Consensus 75 ~~L---r~~~~iPVV~I~vs~-~Dil~aL~~a~~~~~kIavVg~~~~~~~~~~i~~ll~~~i~~~~~~~~ee~~~~i~~l 150 (225)
T 2pju_A 75 AYL---KSRLSVPVILIKPSG-YDVLQFLAKAGKLTSSIGVVTYQETIPALVAFQKTFNLRLDQRSYITEEDARGQINEL 150 (225)
T ss_dssp HHH---HTTCSSCEEEECCCH-HHHHHHHHHTTCTTSCEEEEEESSCCHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHH
T ss_pred HHH---HhhCCCCEEEecCCH-HHHHHHHHHHHhhCCcEEEEeCchhhhHHHHHHHHhCCceEEEEeCCHHHHHHHHHHH
Confidence 222 234455555555555 222222111110 11234457888889
Q ss_pred HHhcccEeehh-cHHHHHH
Q 013861 411 RRAGADIILTY-FALQAAR 428 (435)
Q Consensus 411 kRAGAd~IiTY-fA~~~a~ 428 (435)
++.|+++||.- .+.++|+
T Consensus 151 ~~~G~~vVVG~~~~~~~A~ 169 (225)
T 2pju_A 151 KANGTEAVVGAGLITDLAE 169 (225)
T ss_dssp HHTTCCEEEESHHHHHHHH
T ss_pred HHCCCCEEECCHHHHHHHH
Confidence 99999999864 4455554
No 142
>1m3u_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; beta-alpha-barrel, TIM-barrel, ketopantoate, selenomethionin decamer; HET: KPL; 1.80A {Escherichia coli} SCOP: c.1.12.8
Probab=65.26 E-value=73 Score=30.74 Aligned_cols=170 Identities=18% Similarity=0.305 Sum_probs=101.5
Q ss_pred CCCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCccc--CcCcCCCCC-----HHHHHHHHHHHCCCeEEEee
Q 013861 146 AMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTG--DEAYNDNGL-----VPRTIWLLKDRYPDLVIYTD 218 (435)
Q Consensus 146 sMPGv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~G--s~A~~~~g~-----v~raIr~iK~~~Pdl~IitD 218 (435)
.||+.|=+.. .+-+-+.|+..+++ | ++ .| ...+.+-++ +..-.+.+.+..+...|++|
T Consensus 20 ~~~tayD~~s-------A~l~e~aG~d~ilv-G---ds----l~~~~lG~~dt~~vtldemi~h~~aV~r~~~~~~vvaD 84 (264)
T 1m3u_A 20 ATITAYDYSF-------AKLFADEGLNVMLV-G---DS----LGMTVQGHDSTLPVTVADIAYHTAAVRRGAPNCLLLAD 84 (264)
T ss_dssp EEEECCSHHH-------HHHHHHHTCCEEEE-C---TT----HHHHTTCCSSSTTCCHHHHHHHHHHHHHHCTTSEEEEE
T ss_pred EEEeCcCHHH-------HHHHHHcCCCEEEE-C---HH----HHHHHcCCCCCCCcCHHHHHHHHHHHHhhCCCCcEEEE
Confidence 4778864443 22233579999877 6 22 12 122333232 22446777788888788899
Q ss_pred ecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCC---CCceeechhh
Q 013861 219 VALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGF---QHVSIMSYTA 295 (435)
Q Consensus 219 VcLc~YTshGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMMDGrVgAIR~aLD~~Gf---~~v~IMSYSa 295 (435)
.-+-.| - +.++..+-|..+.++||+.|=-.|= +-.+..||.+- ++|. -|+++..=+.
T Consensus 85 ~pfgsy--------------~----~~~~a~~~a~rl~kaGa~aVklEgg-~e~~~~I~al~-~agipV~gHiGLtPq~v 144 (264)
T 1m3u_A 85 LPFMAY--------------A----TPEQAFENAATVMRAGANMVKIEGG-EWLVETVQMLT-ERAVPVCGHLGLTPQSV 144 (264)
T ss_dssp CCTTSS--------------S----SHHHHHHHHHHHHHTTCSEEECCCS-GGGHHHHHHHH-HTTCCEEEEEESCGGGH
T ss_pred CCCCCc--------------C----CHHHHHHHHHHHHHcCCCEEEECCc-HHHHHHHHHHH-HCCCCeEeeecCCceee
Confidence 533333 1 3355566677788899999987763 11356666554 4552 2333333332
Q ss_pred hhcccccccchhhhcCCCCCCCccccCCCCC---CHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhC
Q 013861 296 KYASSFYGPFREALDSNPRFGDKKTYQMNPA---NYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKY 372 (435)
Q Consensus 296 KyASafYGPFRdA~~Sap~fgDRktYQmdp~---N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~ 372 (435)
.-- | .|.+--+ ..+++|+.+..=.+-|||+|. + ++.+ -++++++.+..
T Consensus 145 ~~~----g----------------gf~v~grt~~~a~~~i~rA~a~~eAGA~~iv-------l-E~vp-~~~a~~it~~l 195 (264)
T 1m3u_A 145 NIF----G----------------GYKVQGRGDEAGDQLLSDALALEAAGAQLLV-------L-ECVP-VELAKRITEAL 195 (264)
T ss_dssp HHH----T----------------SSCCCCCSHHHHHHHHHHHHHHHHHTCCEEE-------E-ESCC-HHHHHHHHHHC
T ss_pred ccc----C----------------CeEEEeCCHHHHHHHHHHHHHHHHCCCcEEE-------E-ecCC-HHHHHHHHHhC
Confidence 211 1 1222111 137888888888889999998 5 3455 58999999999
Q ss_pred CCCeEEE
Q 013861 373 PLPIAAY 379 (435)
Q Consensus 373 ~lPvaaY 379 (435)
++|+...
T Consensus 196 ~iP~igI 202 (264)
T 1m3u_A 196 AIPVIGI 202 (264)
T ss_dssp SSCEEEE
T ss_pred CCCEEEe
Confidence 9998764
No 143
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=65.20 E-value=23 Score=26.48 Aligned_cols=65 Identities=28% Similarity=0.328 Sum_probs=43.1
Q ss_pred CHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCc
Q 013861 327 NYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMID 398 (435)
Q Consensus 327 N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G~id 398 (435)
|..||+..... ...|+++... --|.+.-+++++.+++...+|+...--+.+......+.+.|..|
T Consensus 33 ~~~~a~~~~~~---~~~dlvl~D~----~l~~~~g~~~~~~l~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~ 97 (120)
T 2a9o_A 33 NGREALEQFEA---EQPDIIILDL----MLPEIDGLEVAKTIRKTSSVPILMLSAKDSEFDKVIGLELGADD 97 (120)
T ss_dssp SHHHHHHHHHH---HCCSEEEECS----SCSSSCHHHHHHHHHHHCCCCEEEEESCCSHHHHHHHHHHTCSE
T ss_pred CHHHHHHHHHh---CCCCEEEEec----cCCCCCHHHHHHHHHhCCCCCEEEEecCCchHHHHHHHhCCHhh
Confidence 56777766543 3579888211 12666778999999987789998887666555555555555443
No 144
>3ru6_A Orotidine 5'-phosphate decarboxylase; structural genomics, center for structural genomics of infec diseases (csgid), TIM-barrel; 1.80A {Campylobacter jejuni subsp}
Probab=64.87 E-value=5.1 Score=39.38 Aligned_cols=47 Identities=19% Similarity=0.137 Sum_probs=36.0
Q ss_pred CCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCch-----HHHHHHHHhhCCCCeEE
Q 013861 322 QMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPY-----LDVIRLLRDKYPLPIAA 378 (435)
Q Consensus 322 Qmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~Y-----LDIIr~vk~~~~lPvaa 378 (435)
=+|+.+.+||+.-+.. + |-.+.+ +|++++. .++|+.+|+.++.+|+.
T Consensus 30 ALD~~~~~eal~l~~~-l--~~~v~~-------vKVG~~lf~~~G~~~V~~Lk~~~g~~Ifl 81 (303)
T 3ru6_A 30 ALDLSTKEECLQLAKE-L--KNLDIW-------LKVGLRAYLRDGFKFIEELKKVDDFKIFL 81 (303)
T ss_dssp ECCCSSHHHHHHHHHH-T--TTSSCE-------EEECHHHHHHHTHHHHHHHHHHCCCEEEE
T ss_pred EeCCCCHHHHHHHHHH-h--CCCccE-------EEeCHHHHHHhCHHHHHHHHHhhCCCEEE
Confidence 3689999998776654 3 345678 9999987 68999999987777664
No 145
>3b8i_A PA4872 oxaloacetate decarboxylase; alpha/beta barrel, helix swapping, lyase; 1.90A {Pseudomonas aeruginosa}
Probab=64.79 E-value=30 Score=33.63 Aligned_cols=109 Identities=16% Similarity=0.138 Sum_probs=67.6
Q ss_pred CCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcC--cCCCCCHHHHHHHHHHHC--CCeEEEeeeccc
Q 013861 147 MPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEA--YNDNGLVPRTIWLLKDRY--PDLVIYTDVALD 222 (435)
Q Consensus 147 MPGv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A--~~~~g~v~raIr~iK~~~--Pdl~IitDVcLc 222 (435)
||.=|- +.. .+.+.+.++.+.|+..|.|=+.+.+ +|. |... .-+-.-...-|+++++.- |+..|++=
T Consensus 89 ~d~Gyg-~~~-~~~~~v~~l~~aGa~gv~iED~~~p-Krc--gh~~gkl~~~~e~~~~I~aa~~a~~~~~~~i~aR---- 159 (287)
T 3b8i_A 89 ADHGYG-NAL-NVMRTVVELERAGIAALTIEDTLLP-AQF--GRKSTDLICVEEGVGKIRAALEARVDPALTIIAR---- 159 (287)
T ss_dssp CTTCSS-SHH-HHHHHHHHHHHHTCSEEEEECBCCS-CCT--TTCTTCBCCHHHHHHHHHHHHHHCCSTTSEEEEE----
T ss_pred CCCCCC-CHH-HHHHHHHHHHHhCCeEEEEcCCCCc-ccc--CCCCCCccCHHHHHHHHHHHHHcCCCCCcEEEEe----
Confidence 443354 554 5899999999999999999655321 222 2111 212123446677777763 44444432
Q ss_pred CCCCCCcceeecCCCcccc-HHHHHHHHHHHHHHHHcCCCeecCCCCCC-chHHHHHHHH
Q 013861 223 PYSSDGHDGIVREDGVIMN-DETVHQLCKQAVSQARAGADVVSPSDMMD-GRVGAIRAAL 280 (435)
Q Consensus 223 ~YTshGHcGIv~e~g~IdN-D~Tv~~Lak~Avs~A~AGADiVAPSDMMD-GrVgAIR~aL 280 (435)
.|. ...++.+.+-|..+++||||+|-+-.+-| -.+.+|.++|
T Consensus 160 ----------------tdaa~~gl~~ai~Ra~ay~eAGAd~i~~e~~~~~~~~~~i~~~~ 203 (287)
T 3b8i_A 160 ----------------TNAELIDVDAVIQRTLAYQEAGADGICLVGVRDFAHLEAIAEHL 203 (287)
T ss_dssp ----------------EETTTSCHHHHHHHHHHHHHTTCSEEEEECCCSHHHHHHHHTTC
T ss_pred ----------------chhhhcCHHHHHHHHHHHHHcCCCEEEecCCCCHHHHHHHHHhC
Confidence 111 01356788889999999999998877665 5566666655
No 146
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=64.74 E-value=51 Score=26.11 Aligned_cols=69 Identities=16% Similarity=0.235 Sum_probs=46.4
Q ss_pred CCHHHHHHHHHhc------ccccccEEecccCCCcccCCCchHHHHHHHHh--hC-CCCeEEEEechHHHHHHHHHHCCC
Q 013861 326 ANYREALVEAQAD------ESEGADILLFSVLGSQVKPGLPYLDVIRLLRD--KY-PLPIAAYQVSGEYSMIKAGGALKM 396 (435)
Q Consensus 326 ~N~~EAlre~~~D------~~EGADilM~~~~~~~VKPal~YLDIIr~vk~--~~-~lPvaaYqVSGEYaMikaAa~~G~ 396 (435)
.|..||+...... .++.-|+|+... -=|.+.=+++++.+|+ .. .+|+...--+.+-..+..+.+.|.
T Consensus 37 ~~~~~al~~l~~~~~~~~~~~~~~dliilD~----~l~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~~~~~g~ 112 (152)
T 3heb_A 37 TDGTSALNYLFGDDKSGRVSAGRAQLVLLDL----NLPDMTGIDILKLVKENPHTRRSPVVILTTTDDQREIQRCYDLGA 112 (152)
T ss_dssp SSHHHHHHHHHCTTSSSGGGTTCBEEEEECS----BCSSSBHHHHHHHHHHSTTTTTSCEEEEESCCCHHHHHHHHHTTC
T ss_pred CCHHHHHHHHhccccccccccCCCCEEEEeC----CCCCCcHHHHHHHHHhcccccCCCEEEEecCCCHHHHHHHHHCCC
Confidence 4677877776522 245689998211 1277788999999998 44 689998876665555666666665
Q ss_pred Cc
Q 013861 397 ID 398 (435)
Q Consensus 397 id 398 (435)
.+
T Consensus 113 ~~ 114 (152)
T 3heb_A 113 NV 114 (152)
T ss_dssp SE
T ss_pred cE
Confidence 44
No 147
>3exr_A RMPD (hexulose-6-phosphate synthase); beta barrel, lyase; 1.70A {Streptococcus mutans} SCOP: c.1.2.3 PDB: 3exs_A* 3ext_A
Probab=64.65 E-value=12 Score=34.28 Aligned_cols=61 Identities=23% Similarity=0.236 Sum_probs=42.4
Q ss_pred HHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC-chHHHHHHH
Q 013861 201 RTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMD-GRVGAIRAA 279 (435)
Q Consensus 201 raIr~iK~~~Pdl~IitDVcLc~YTshGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMMD-GrVgAIR~a 279 (435)
..|+.||+.+|+.-|+.|+-| . |+-.|+... .+++|||+|.=-.... ..+.+.+++
T Consensus 47 ~~v~~l~~~~p~~~iflDlKl------------~-----Dip~t~~~~------~~~~Gad~vtVH~~~g~~~l~~a~~~ 103 (221)
T 3exr_A 47 ELVEVLRSLFPDKIIVADTKC------------A-----DAGGTVAKN------NAVRGADWMTCICSATIPTMKAARKA 103 (221)
T ss_dssp HHHHHHHHHCTTSEEEEEEEE------------C-----SCHHHHHHH------HHTTTCSEEEEETTSCHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcEEEEEEe------------e-----ccHHHHHHH------HHHcCCCEEEEeccCCHHHHHHHHHH
Confidence 579999999999999999876 1 456666643 4899999954433322 336666777
Q ss_pred HHHCC
Q 013861 280 LDAEG 284 (435)
Q Consensus 280 LD~~G 284 (435)
+.+.|
T Consensus 104 ~~~~g 108 (221)
T 3exr_A 104 IEDIN 108 (221)
T ss_dssp HHHHC
T ss_pred HHhcC
Confidence 76655
No 148
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=64.50 E-value=34 Score=30.72 Aligned_cols=90 Identities=12% Similarity=0.108 Sum_probs=53.7
Q ss_pred CCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhCCCCeEEEEechH--HHHHHHHHHCC--------
Q 013861 326 ANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAAYQVSGE--YSMIKAGGALK-------- 395 (435)
Q Consensus 326 ~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~~lPvaaYqVSGE--YaMikaAa~~G-------- 395 (435)
++.+|++..+..= ++|+|+++ = .+.--+.| |+.+++||.--++||. ...++.|-+.+
T Consensus 36 ~~l~~~v~~a~~~-~~~~dVII-------S--RGgta~~l---r~~~~iPVV~I~~s~~Dil~al~~a~~~~~kIavvg~ 102 (196)
T 2q5c_A 36 ASLTRASKIAFGL-QDEVDAII-------S--RGATSDYI---KKSVSIPSISIKVTRFDTMRAVYNAKRFGNELALIAY 102 (196)
T ss_dssp CCHHHHHHHHHHH-TTTCSEEE-------E--EHHHHHHH---HTTCSSCEEEECCCHHHHHHHHHHHGGGCSEEEEEEE
T ss_pred CCHHHHHHHHHHh-cCCCeEEE-------E--CChHHHHH---HHhCCCCEEEEcCCHhHHHHHHHHHHhhCCcEEEEeC
Confidence 5788899888776 79999998 1 12223333 3456677777776663 22222222211
Q ss_pred ------------C---------CchhhHHHHHHHHHHHhcccEeehh-cHHHHHH
Q 013861 396 ------------M---------IDEQRVMMESLMCLRRAGADIILTY-FALQAAR 428 (435)
Q Consensus 396 ------------~---------ide~~~v~Esl~~ikRAGAd~IiTY-fA~~~a~ 428 (435)
+ ++..+-+-+.+..+++.|+++||.- .+.++|+
T Consensus 103 ~~~~~~~~~~~~ll~~~i~~~~~~~~~e~~~~i~~l~~~G~~vvVG~~~~~~~A~ 157 (196)
T 2q5c_A 103 KHSIVDKHEIEAMLGVKIKEFLFSSEDEITTLISKVKTENIKIVVSGKTVTDEAI 157 (196)
T ss_dssp SSCSSCHHHHHHHHTCEEEEEEECSGGGHHHHHHHHHHTTCCEEEECHHHHHHHH
T ss_pred cchhhHHHHHHHHhCCceEEEEeCCHHHHHHHHHHHHHCCCeEEECCHHHHHHHH
Confidence 0 1112345778889999999999864 4455554
No 149
>2czd_A Orotidine 5'-phosphate decarboxylase; pyrimidine biosynthesis, orotidine 5'-phosphate decarboxylas (ompdecase), structural genomics; 1.60A {Pyrococcus horikoshii} SCOP: c.1.2.3 PDB: 2cz5_A 2cze_A* 2czf_A*
Probab=64.25 E-value=2.8 Score=37.52 Aligned_cols=72 Identities=25% Similarity=0.270 Sum_probs=47.5
Q ss_pred CCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCch-----HHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCC
Q 013861 323 MNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPY-----LDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMI 397 (435)
Q Consensus 323 mdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~Y-----LDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G~i 397 (435)
+|+.|.+|+++.++. -|+|++. +|++..+ .++|+.+|+.++.++.. ....-
T Consensus 6 ~D~~~l~~~~~~~~~---~~~~~~~-------~kv~~~~f~~~G~~~i~~lr~~~~~~v~~--------------D~kl~ 61 (208)
T 2czd_A 6 LDVYEGERAIKIAKS---VKDYISM-------IKVNWPLILGSGVDIIRRLKEETGVEIIA--------------DLKLA 61 (208)
T ss_dssp CCCCSHHHHHHHHHH---HGGGCSE-------EEEEHHHHHHHCTTHHHHHHHHHCCEEEE--------------EEEEC
T ss_pred ecCCCHHHHHHHHHH---hcccccE-------EEecHHHHHhhCHHHHHHHHHcCCCEEEE--------------EeeeC
Confidence 688899999887764 3788998 9998755 36788888874444431 11112
Q ss_pred chhhHHHHHHHHHHHhcccEe
Q 013861 398 DEQRVMMESLMCLRRAGADII 418 (435)
Q Consensus 398 de~~~v~Esl~~ikRAGAd~I 418 (435)
|--..+......+.++|||+|
T Consensus 62 DI~~t~~~~v~~~~~~Gad~v 82 (208)
T 2czd_A 62 DIPNTNRLIARKVFGAGADYV 82 (208)
T ss_dssp SCHHHHHHHHHHHHHTTCSEE
T ss_pred chHHHHHHHHHHHHhcCCCEE
Confidence 323334455666778888887
No 150
>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A*
Probab=64.20 E-value=16 Score=33.84 Aligned_cols=73 Identities=16% Similarity=0.226 Sum_probs=46.4
Q ss_pred HHHHHhccc--ccccEEecccCCCcccCC-Cch-------HHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhh
Q 013861 332 LVEAQADES--EGADILLFSVLGSQVKPG-LPY-------LDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQR 401 (435)
Q Consensus 332 lre~~~D~~--EGADilM~~~~~~~VKPa-l~Y-------LDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G~ide~~ 401 (435)
+.++..-++ .|+|.|-+.+.-.+++++ ..| .++|+.+|+..++||.+=- + .+|.+
T Consensus 113 ~~~~a~~~~~~~g~d~iei~~~~p~~~~g~~~~g~~~~~~~eii~~v~~~~~~pv~vk~-~-----------~~~~~--- 177 (311)
T 1ep3_A 113 YVAVCAKIGDAANVKAIELNISCPNVKHGGQAFGTDPEVAAALVKACKAVSKVPLYVKL-S-----------PNVTD--- 177 (311)
T ss_dssp HHHHHHHHTTSTTEEEEEEECCSEEGGGTTEEGGGCHHHHHHHHHHHHHHCSSCEEEEE-C-----------SCSSC---
T ss_pred HHHHHHHHhccCCCCEEEEeCCCCCCCCchhhhcCCHHHHHHHHHHHHHhcCCCEEEEE-C-----------CChHH---
Confidence 444444444 699998754432334442 223 8999999999899997532 2 13433
Q ss_pred HHHHHHHHHHHhcccEeeh
Q 013861 402 VMMESLMCLRRAGADIILT 420 (435)
Q Consensus 402 ~v~Esl~~ikRAGAd~IiT 420 (435)
+.|....+..+|+|.|+.
T Consensus 178 -~~~~a~~l~~~G~d~i~v 195 (311)
T 1ep3_A 178 -IVPIAKAVEAAGADGLTM 195 (311)
T ss_dssp -SHHHHHHHHHTTCSEEEE
T ss_pred -HHHHHHHHHHcCCCEEEE
Confidence 245566778899998875
No 151
>2dqw_A Dihydropteroate synthase; dimer, structural genomics; 1.65A {Thermus thermophilus} PDB: 2dza_A* 2dzb_A*
Probab=63.97 E-value=4.2 Score=39.77 Aligned_cols=102 Identities=22% Similarity=0.346 Sum_probs=58.1
Q ss_pred hcCCC-CCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCc----------hHHHHHHHHhhCCCCeE
Q 013861 309 LDSNP-RFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLP----------YLDVIRLLRDKYPLPIA 377 (435)
Q Consensus 309 ~~Sap-~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~----------YLDIIr~vk~~~~lPva 377 (435)
++-+| +|-|-..|. +.++|+..++.-+++|||||= +=|.--.|+.. .+-+|+.+++. ++||.
T Consensus 35 lNvTPDSFsdgg~~~----~~~~a~~~a~~~v~~GAdIID--IGgeSTrPga~~v~~~eE~~Rv~pvI~~l~~~-~vpiS 107 (294)
T 2dqw_A 35 LNLTPDSFSDGGRYL----DPERALERAREMVAEGADILD--LGAESTRPGAAPVPVEEEKRRLLPVLEAVLSL-GVPVS 107 (294)
T ss_dssp EECCC-----------------CCHHHHHHHHHHTCSEEE--EECC-----------CCHHHHHHHHHHHHHTT-CSCEE
T ss_pred EeCCCCCCCCCCCCC----CHHHHHHHHHHHHHCCCCEEE--ECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhC-CCeEE
Confidence 56677 477766663 567788889999999999997 22323457633 46788888876 88886
Q ss_pred EEEechHHHHHHHHHHCC--CCch-----hhHHHHHHHHHHHhcccEeehhc
Q 013861 378 AYQVSGEYSMIKAGGALK--MIDE-----QRVMMESLMCLRRAGADIILTYF 422 (435)
Q Consensus 378 aYqVSGEYaMikaAa~~G--~ide-----~~~v~Esl~~ikRAGAd~IiTYf 422 (435)
. =|=....+++|.++| +|+. +. |.+.-.++.|+-+|+...
T Consensus 108 I--DT~~~~Va~aAl~aGa~iINdVsg~~d~---~m~~v~a~~~~~vVlmh~ 154 (294)
T 2dqw_A 108 V--DTRKPEVAEEALKLGAHLLNDVTGLRDE---RMVALAARHGVAAVVMHM 154 (294)
T ss_dssp E--ECSCHHHHHHHHHHTCSEEECSSCSCCH---HHHHHHHHHTCEEEEECC
T ss_pred E--ECCCHHHHHHHHHhCCCEEEECCCCCCh---HHHHHHHHhCCCEEEEcC
Confidence 5 244556777777766 4432 22 344456788999998665
No 152
>3eoo_A Methylisocitrate lyase; seattle structural genomics center for infectious disease, ssgcid; 2.90A {Burkholderia pseudomallei 1655} SCOP: c.1.12.7
Probab=63.89 E-value=74 Score=31.04 Aligned_cols=102 Identities=18% Similarity=0.229 Sum_probs=60.7
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHH---HHHC--CCeEEEeeecccCCCCCCccee
Q 013861 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLL---KDRY--PDLVIYTDVALDPYSSDGHDGI 232 (435)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~i---K~~~--Pdl~IitDVcLc~YTshGHcGI 232 (435)
.+.+.++++.+.|+..|.|=+.+.+ +| +|--.-.+==+....+..| ++.- ||++|++=+- .+.
T Consensus 99 ~v~~~v~~l~~aGaagv~iEDq~~~-k~--cGh~~gk~l~~~~e~~~ri~Aa~~A~~~~~~~I~ARTD--a~~------- 166 (298)
T 3eoo_A 99 NIARTIRSFIKAGVGAVHLEDQVGQ-KR--CGHRPGKECVPAGEMVDRIKAAVDARTDETFVIMARTD--AAA------- 166 (298)
T ss_dssp HHHHHHHHHHHTTCSEEEEECBCCC-CC--TTCCCCCCBCCHHHHHHHHHHHHHHCSSTTSEEEEEEC--THH-------
T ss_pred HHHHHHHHHHHhCCeEEEECCCCCC-cc--cCCCCCCeecCHHHHHHHHHHHHHhccCCCeEEEEeeh--hhh-------
Confidence 5888899999999999999665432 12 2322111111223334444 4443 7777775332 110
Q ss_pred ecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC-chHHHHHHHH
Q 013861 233 VREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMD-GRVGAIRAAL 280 (435)
Q Consensus 233 v~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMMD-GrVgAIR~aL 280 (435)
.+.++...+-|..|++||||+|-+-.+-| -.+.++.+++
T Consensus 167 ---------~~gldeai~Ra~ay~~AGAD~if~~~~~~~ee~~~~~~~~ 206 (298)
T 3eoo_A 167 ---------AEGIDAAIERAIAYVEAGADMIFPEAMKTLDDYRRFKEAV 206 (298)
T ss_dssp ---------HHHHHHHHHHHHHHHHTTCSEEEECCCCSHHHHHHHHHHH
T ss_pred ---------hcCHHHHHHHHHhhHhcCCCEEEeCCCCCHHHHHHHHHHc
Confidence 12355566678899999999998877754 3455555555
No 153
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=63.44 E-value=25 Score=26.49 Aligned_cols=64 Identities=20% Similarity=0.208 Sum_probs=46.1
Q ss_pred CCCHHHHHHHHHhcccccccEEecccCCCccc---CCCchHHHHHHHHhhC-CCCeEEEEechHHHHHHHHHHCCCCc
Q 013861 325 PANYREALVEAQADESEGADILLFSVLGSQVK---PGLPYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMID 398 (435)
Q Consensus 325 p~N~~EAlre~~~D~~EGADilM~~~~~~~VK---Pal~YLDIIr~vk~~~-~lPvaaYqVSGEYaMikaAa~~G~id 398 (435)
..|..||+..... +..|+++ +- |.+.-+++++.+++.. .+|+...--+++......+.+.|..+
T Consensus 33 ~~~~~~a~~~~~~---~~~dlil-------~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~ 100 (120)
T 1tmy_A 33 ATNGREAVEKYKE---LKPDIVT-------MDITMPEMNGIDAIKEIMKIDPNAKIIVCSAMGQQAMVIEAIKAGAKD 100 (120)
T ss_dssp ESSHHHHHHHHHH---HCCSEEE-------EECSCGGGCHHHHHHHHHHHCTTCCEEEEECTTCHHHHHHHHHTTCCE
T ss_pred ECCHHHHHHHHHh---cCCCEEE-------EeCCCCCCcHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHhCcce
Confidence 3477888876653 3579988 44 5566689999999875 59999887777777666666666544
No 154
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=63.41 E-value=54 Score=25.97 Aligned_cols=66 Identities=17% Similarity=0.164 Sum_probs=45.9
Q ss_pred CCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhC-CCCeEEEEechHHHHHHHHHHCCCCc
Q 013861 326 ANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMID 398 (435)
Q Consensus 326 ~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~-~lPvaaYqVSGEYaMikaAa~~G~id 398 (435)
.|..||+..... ...|+|++.. . -|.+.-+++++.+|+.. .+|+...--..+...+..+.+.|..+
T Consensus 53 ~~~~~al~~l~~---~~~dlii~D~---~-l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~ 119 (150)
T 4e7p_A 53 KNGQEAIQLLEK---ESVDIAILDV---E-MPVKTGLEVLEWIRSEKLETKVVVVTTFKRAGYFERAVKAGVDA 119 (150)
T ss_dssp SSHHHHHHHHTT---SCCSEEEECS---S-CSSSCHHHHHHHHHHTTCSCEEEEEESCCCHHHHHHHHHTTCSE
T ss_pred CCHHHHHHHhhc---cCCCEEEEeC---C-CCCCcHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHCCCcE
Confidence 467777776643 4589998221 1 26677899999999876 59998887666666666666666544
No 155
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=63.07 E-value=45 Score=26.08 Aligned_cols=62 Identities=19% Similarity=0.145 Sum_probs=41.6
Q ss_pred CCHHHHHHHHHhcccccccEEecccCCCccc---CCCchHHHHHHHHh--h-CCCCeEEEEechHHHHHHHHHHCCCC
Q 013861 326 ANYREALVEAQADESEGADILLFSVLGSQVK---PGLPYLDVIRLLRD--K-YPLPIAAYQVSGEYSMIKAGGALKMI 397 (435)
Q Consensus 326 ~N~~EAlre~~~D~~EGADilM~~~~~~~VK---Pal~YLDIIr~vk~--~-~~lPvaaYqVSGEYaMikaAa~~G~i 397 (435)
.|..||+..... ..-|+|+ +- |.+.-+++++.+|+ . ..+|+...--..+-..+..+.+.|..
T Consensus 38 ~~~~~a~~~l~~---~~~dlii-------~D~~l~~~~g~~~~~~lr~~~~~~~~pii~~s~~~~~~~~~~~~~~ga~ 105 (144)
T 3kht_A 38 DNGAKALYQVQQ---AKYDLII-------LDIGLPIANGFEVMSAVRKPGANQHTPIVILTDNVSDDRAKQCMAAGAS 105 (144)
T ss_dssp SSHHHHHHHHTT---CCCSEEE-------ECTTCGGGCHHHHHHHHHSSSTTTTCCEEEEETTCCHHHHHHHHHTTCS
T ss_pred CCHHHHHHHhhc---CCCCEEE-------EeCCCCCCCHHHHHHHHHhcccccCCCEEEEeCCCCHHHHHHHHHcCCC
Confidence 366777766643 4589998 54 45556899999998 3 36999988665555555555555543
No 156
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=63.06 E-value=9.7 Score=36.24 Aligned_cols=107 Identities=17% Similarity=0.230 Sum_probs=70.9
Q ss_pred CCccccHHHHHHHHHHHHHHHHcCCCeecCCCC------C--CchHHHHHHHHHHCCCCCceeechhhhhcccccccchh
Q 013861 236 DGVIMNDETVHQLCKQAVSQARAGADVVSPSDM------M--DGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFRE 307 (435)
Q Consensus 236 ~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDM------M--DGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRd 307 (435)
||.|| -+.++.|+ --+.++|+|-+.+.+. | +=|...++.+.+..+ .+++|+.-..
T Consensus 15 dg~iD-~~~l~~lv---~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~-grvpviaGvg------------ 77 (294)
T 2ehh_A 15 EGEVD-YEALGNLI---EFHVDNGTDAILVCGTTGESPTLTFEEHEKVIEFAVKRAA-GRIKVIAGTG------------ 77 (294)
T ss_dssp TTEEC-HHHHHHHH---HHHHTTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHT-TSSEEEEECC------------
T ss_pred CCCcC-HHHHHHHH---HHHHHCCCCEEEECccccChhhCCHHHHHHHHHHHHHHhC-CCCcEEEecC------------
Confidence 57776 33444444 3456789998876543 2 247777888887654 3777775422
Q ss_pred hhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCch-------HHHHHHHHhhCCCCeEEEE
Q 013861 308 ALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPY-------LDVIRLLRDKYPLPIAAYQ 380 (435)
Q Consensus 308 A~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~Y-------LDIIr~vk~~~~lPvaaYq 380 (435)
+ .|.+|+++.++.=.+-|||.+| |=|-..| .+=.+.+.+.+++||..||
T Consensus 78 ---~--------------~~t~~ai~la~~A~~~Gadavl-------v~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn 133 (294)
T 2ehh_A 78 ---G--------------NATHEAVHLTAHAKEVGADGAL-------VVVPYYNKPTQRGLYEHFKTVAQEVDIPIIIYN 133 (294)
T ss_dssp ---C--------------SCHHHHHHHHHHHHHTTCSEEE-------EECCCSSCCCHHHHHHHHHHHHHHCCSCEEEEE
T ss_pred ---C--------------CCHHHHHHHHHHHHhcCCCEEE-------ECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 1 2578888888777778999999 5433211 3344567788899999999
Q ss_pred ech
Q 013861 381 VSG 383 (435)
Q Consensus 381 VSG 383 (435)
+-|
T Consensus 134 ~P~ 136 (294)
T 2ehh_A 134 IPS 136 (294)
T ss_dssp CHH
T ss_pred CCc
Confidence 754
No 157
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}
Probab=62.78 E-value=11 Score=35.45 Aligned_cols=70 Identities=27% Similarity=0.321 Sum_probs=45.2
Q ss_pred CCHHHHHHHHHhcccccccEEeccc-CCCcccCCC--chHHHHHHHHhh--CCCCeEEEEechHHHHHHHHHHCCCCchh
Q 013861 326 ANYREALVEAQADESEGADILLFSV-LGSQVKPGL--PYLDVIRLLRDK--YPLPIAAYQVSGEYSMIKAGGALKMIDEQ 400 (435)
Q Consensus 326 ~N~~EAlre~~~D~~EGADilM~~~-~~~~VKPal--~YLDIIr~vk~~--~~lPvaaYqVSGEYaMikaAa~~G~ide~ 400 (435)
.|.+|+.+.. +.|||+|.++. ..+.-||.. .=+|.++++++. .++||.| .|-|+.+
T Consensus 143 ht~~Ea~~A~----~~GaDyI~vgpvf~T~tK~~~~~~gl~~l~~~~~~~~~~iPvvA---------------iGGI~~~ 203 (243)
T 3o63_A 143 HDPDQVAAAA----AGDADYFCVGPCWPTPTKPGRAAPGLGLVRVAAELGGDDKPWFA---------------IGGINAQ 203 (243)
T ss_dssp CSHHHHHHHH----HSSCSEEEECCSSCCCC-----CCCHHHHHHHHTC---CCCEEE---------------ESSCCTT
T ss_pred CCHHHHHHHh----hCCCCEEEEcCccCCCCCCCcchhhHHHHHHHHHhccCCCCEEE---------------ecCCCHH
Confidence 5777755433 37999999654 345566652 248889999987 4899876 3445654
Q ss_pred hHHHHHHHHHHHhcccEee
Q 013861 401 RVMMESLMCLRRAGADIIL 419 (435)
Q Consensus 401 ~~v~Esl~~ikRAGAd~Ii 419 (435)
+ +..++++|||.|.
T Consensus 204 n-----i~~~~~aGa~gva 217 (243)
T 3o63_A 204 R-----LPAVLDAGARRIV 217 (243)
T ss_dssp T-----HHHHHHTTCCCEE
T ss_pred H-----HHHHHHcCCCEEE
Confidence 3 4567789999875
No 158
>2xed_A Putative maleate isomerase; nicotinic acid catabolism, cofactor-independent CIS-trans isomerase; 1.95A {Nocardia farcinica} PDB: 2xec_A
Probab=62.46 E-value=2.5 Score=39.98 Aligned_cols=120 Identities=18% Similarity=0.211 Sum_probs=65.7
Q ss_pred HHHHHHHHHHcCCCeecCCCCCC----c--------------------------hHHHHHHHHHHCCCCCceeechhhhh
Q 013861 248 LCKQAVSQARAGADVVSPSDMMD----G--------------------------RVGAIRAALDAEGFQHVSIMSYTAKY 297 (435)
Q Consensus 248 Lak~Avs~A~AGADiVAPSDMMD----G--------------------------rVgAIR~aLD~~Gf~~v~IMSYSaKy 297 (435)
|.+.+..+.++|+|+|.-..--+ | -+.++-.+|...|..+|+|++=..+-
T Consensus 79 l~~aa~~L~~~g~d~IviaCnta~~~~G~~~~~~~~~~l~~~~~~~~~~iPv~~~~~A~~~al~~~g~~rvgvltp~~~~ 158 (273)
T 2xed_A 79 RERCVLEIADAAPEVILYACLVAVMVGGPGEHHRVESAVAEQLATGGSQALVRSSAGALVEGLRALDAQRVALVTPYMRP 158 (273)
T ss_dssp HHHHHHHHHTTCCSEEEECCHHHHHTTCTTHHHHHHHHHHHHHHHTTCCCEEEEHHHHHHHHHHHTTCCEEEEEECSCHH
T ss_pred HHHHHHHHhhcCCCEEEECCChHHHhcccchhHHHHHHHHHHhhccCCCCCEecHHHHHHHHHHHcCCCeEEEEcCChhh
Confidence 45566667778888877655222 1 13555566666788889999633322
Q ss_pred cccccccchhhhcCCC----CCC--C-ccccCCCCCCHHHHHHHHHhcc-cccccEEecc-cCCCcccCCCchHHHHHHH
Q 013861 298 ASSFYGPFREALDSNP----RFG--D-KKTYQMNPANYREALVEAQADE-SEGADILLFS-VLGSQVKPGLPYLDVIRLL 368 (435)
Q Consensus 298 ASafYGPFRdA~~Sap----~fg--D-RktYQmdp~N~~EAlre~~~D~-~EGADilM~~-~~~~~VKPal~YLDIIr~v 368 (435)
-+.+|--|-++.+-.. .++ + -+--+.++ +.+.++.+.+ ++|||.|+.+ .- .++.++++..+
T Consensus 159 ~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~g~~~~----~~l~~~~~~l~~~gadaIvLg~CT------~l~~~~~~~~l 228 (273)
T 2xed_A 159 LAEKVVAYLEAEGFTISDWRALEVADNTEVGCIPG----EQVMAAARSLDLSEVDALVISCAV------QMPSLPLVETA 228 (273)
T ss_dssp HHHHHHHHHHHTTCEEEEEEECCCCBHHHHHTCCH----HHHHHHHHHSCCTTCSEEEEESSS------SSCCTTHHHHH
T ss_pred hHHHHHHHHHHCCCEEeccccCCCccchhhcccCH----HHHHHHHHHHhhCCCCEEEEcCCC------CcchHHhHHHH
Confidence 2334433333222111 011 0 11112333 3344444444 3699999932 21 35566888888
Q ss_pred HhhCCCCeE
Q 013861 369 RDKYPLPIA 377 (435)
Q Consensus 369 k~~~~lPva 377 (435)
.+.+++||.
T Consensus 229 e~~lg~PVi 237 (273)
T 2xed_A 229 EREFGIPVL 237 (273)
T ss_dssp HHHHSSCEE
T ss_pred HHHhCCCEE
Confidence 888899984
No 159
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=62.39 E-value=51 Score=25.35 Aligned_cols=66 Identities=11% Similarity=0.022 Sum_probs=44.7
Q ss_pred CCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHh--hC-CCCeEEEEechHHHHHHHHHHCCCCc
Q 013861 326 ANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRD--KY-PLPIAAYQVSGEYSMIKAGGALKMID 398 (435)
Q Consensus 326 ~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~--~~-~lPvaaYqVSGEYaMikaAa~~G~id 398 (435)
.|..||+..... +..|+|+... --|.+.-+++++.+++ .. .+|+...--+.+...+..+.+.|..+
T Consensus 41 ~~~~~a~~~l~~---~~~dlii~d~----~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~ 109 (143)
T 3cnb_A 41 YNPFDAGDLLHT---VKPDVVMLDL----MMVGMDGFSICHRIKSTPATANIIVIAMTGALTDDNVSRIVALGAET 109 (143)
T ss_dssp CSHHHHHHHHHH---TCCSEEEEET----TCTTSCHHHHHHHHHTSTTTTTSEEEEEESSCCHHHHHHHHHTTCSE
T ss_pred CCHHHHHHHHHh---cCCCEEEEec----ccCCCcHHHHHHHHHhCccccCCcEEEEeCCCCHHHHHHHHhcCCcE
Confidence 366777766653 3579998221 1266778999999998 33 69999887766666666666666543
No 160
>2fym_A Enolase; RNA degradosome, enolase, lyase; 1.60A {Escherichia coli} SCOP: c.1.11.1 d.54.1.1 PDB: 1e9i_A 3h8a_A
Probab=62.36 E-value=10 Score=38.01 Aligned_cols=125 Identities=18% Similarity=0.281 Sum_probs=79.9
Q ss_pred chHHHHHHHHHHCCCC---CceeechhhhhcccccccchhhhcCCCCCCCccccCCCCC-----CHHHHHHHHHhccccc
Q 013861 271 GRVGAIRAALDAEGFQ---HVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPA-----NYREALVEAQADESEG 342 (435)
Q Consensus 271 GrVgAIR~aLD~~Gf~---~v~IMSYSaKyASafYGPFRdA~~Sap~fgDRktYQmdp~-----N~~EAlre~~~D~~EG 342 (435)
-+|.+||+++.+.||+ ++.||-=+| ||.||. +..|-+.-. +..||++ ....+++.
T Consensus 220 ~~l~~vreai~~~g~~~G~dv~l~vDaa--as~~~~--------------~~~Y~~~~~n~~~~t~~~ai~-~~~~L~~~ 282 (431)
T 2fym_A 220 EALAVIAEAVKAAGYELGKDITLAMDCA--ASEFYK--------------DGKYVLAGEGNKAFTSEEFTH-FLEELTKQ 282 (431)
T ss_dssp HHHHHHHHHHHHTTCCBTTTBEEEEECC--GGGGEE--------------TTEEEEGGGTTEEECHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCccEEEEeec--hhhccc--------------cCceeeccCCCCCCCHHHHHH-HHHHHHHh
Confidence 5799999999999994 688887655 788993 124655322 3566654 34445555
Q ss_pred ccEEecccCCCcccCCCch--HHHHHHHHhhC--CCCeEEEE--echHHHHHHHHHHCCCCch-----hh--HHHHHHHH
Q 013861 343 ADILLFSVLGSQVKPGLPY--LDVIRLLRDKY--PLPIAAYQ--VSGEYSMIKAGGALKMIDE-----QR--VMMESLMC 409 (435)
Q Consensus 343 ADilM~~~~~~~VKPal~Y--LDIIr~vk~~~--~lPvaaYq--VSGEYaMikaAa~~G~ide-----~~--~v~Esl~~ 409 (435)
.++.+ +.=-++- +|=.+++++++ ++||++=. |.. -..++.+.++|.+|- -+ -+.|++..
T Consensus 283 ~~i~~-------iEePl~~~d~~~~~~l~~~~~~~ipIa~dEl~~~~-~~~~~~~i~~~a~d~i~ik~~~~GGite~~~i 354 (431)
T 2fym_A 283 YPIVS-------IEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTN-TKILKEGIEKGIANSILIKFNQIGSLTETLAA 354 (431)
T ss_dssp SCEEE-------EESCSCTTCHHHHHHHHHHHTTTSEEEESTTTTTC-HHHHHHHHHTTCCSEEEECGGGTCSHHHHHHH
T ss_pred CCceE-------EECCCCcccHHHHHHHHHHhCCCCeEEeCCcccCC-HHHHHHHHHhCCCCEEEECccccCCHHHHHHH
Confidence 67877 6544443 67788899988 89998633 122 245666677777663 22 35665554
Q ss_pred ---HHHhcccEeeh
Q 013861 410 ---LRRAGADIILT 420 (435)
Q Consensus 410 ---ikRAGAd~IiT 420 (435)
.+.+|-.++++
T Consensus 355 ~~~A~~~g~~~~~~ 368 (431)
T 2fym_A 355 IKMAKDAGYTAVIS 368 (431)
T ss_dssp HHHHHHTTCEEEEE
T ss_pred HHHHHHCCCeEEEe
Confidence 45667777663
No 161
>2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A*
Probab=62.34 E-value=17 Score=32.05 Aligned_cols=70 Identities=21% Similarity=0.298 Sum_probs=42.7
Q ss_pred CCHHHHHHHHHhcccccccEEecccC-CCcccCC---CchHHHHHHHHhhCC-CCeEEEEechHHHHHHHHHHCCCCchh
Q 013861 326 ANYREALVEAQADESEGADILLFSVL-GSQVKPG---LPYLDVIRLLRDKYP-LPIAAYQVSGEYSMIKAGGALKMIDEQ 400 (435)
Q Consensus 326 ~N~~EAlre~~~D~~EGADilM~~~~-~~~VKPa---l~YLDIIr~vk~~~~-lPvaaYqVSGEYaMikaAa~~G~ide~ 400 (435)
.+..|+ +++. +.|+|+|.++.+ -+.-|++ ..=++.++++++.++ +|+.+ .|-++.+
T Consensus 124 ~t~~e~-~~a~---~~g~d~v~~~~v~~t~~~~~~~~~~~~~~l~~~~~~~~~~pvia---------------~GGI~~~ 184 (227)
T 2tps_A 124 HTMSEV-KQAE---EDGADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQGISIPIVG---------------IGGITID 184 (227)
T ss_dssp CSHHHH-HHHH---HHTCSEEEECCSSCCCSSSSCCCCCTTHHHHHHHHTTCCCCEEE---------------ESSCCTT
T ss_pred CCHHHH-HHHH---hCCCCEEEECCCcCCCCCCCCCCccCHHHHHHHHHhCCCCCEEE---------------EcCCCHH
Confidence 355663 3333 579999995432 2333443 123788999998887 99865 4556654
Q ss_pred hHHHHHHHHHHHhcccEee
Q 013861 401 RVMMESLMCLRRAGADIIL 419 (435)
Q Consensus 401 ~~v~Esl~~ikRAGAd~Ii 419 (435)
++ -| +..+|||.|+
T Consensus 185 nv-~~----~~~~Ga~gv~ 198 (227)
T 2tps_A 185 NA-AP----VIQAGADGVS 198 (227)
T ss_dssp TS-HH----HHHTTCSEEE
T ss_pred HH-HH----HHHcCCCEEE
Confidence 32 23 3457888765
No 162
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=62.30 E-value=23 Score=31.81 Aligned_cols=191 Identities=19% Similarity=0.199 Sum_probs=96.5
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCC
Q 013861 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDG 237 (435)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTshGHcGIv~e~g 237 (435)
+.++.++.+.+.|+..+.+... +..+ ...+..-..++.|++.+ ++-|+. .|
T Consensus 32 d~~~~a~~~~~~Gad~i~v~d~------~~~~----~~~~~~~~~i~~i~~~~-~iPvi~------------------~G 82 (252)
T 1ka9_F 32 DPVEAARAYDEAGADELVFLDI------SATH----EERAILLDVVARVAERV-FIPLTV------------------GG 82 (252)
T ss_dssp CHHHHHHHHHHHTCSCEEEEEC------CSST----TCHHHHHHHHHHHHTTC-CSCEEE------------------ES
T ss_pred CHHHHHHHHHHcCCCEEEEEcC------Cccc----cCccccHHHHHHHHHhC-CCCEEE------------------EC
Confidence 4788899999999999877542 1111 11223345677787764 333333 13
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCeecC-CCCCCchHHHHHHHHHHCCCCCceeechhhhhcccccccchhhhcCCCCCC
Q 013861 238 VIMNDETVHQLCKQAVSQARAGADVVSP-SDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFG 316 (435)
Q Consensus 238 ~IdND~Tv~~Lak~Avs~A~AGADiVAP-SDMMDGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRdA~~Sap~fg 316 (435)
.|.+-+ ++....++|||.|.= +..+... ..+++++...|-..+ +++-++|--. |-|+=+.. |
T Consensus 83 gi~~~~-------~~~~~~~~Gad~V~lg~~~l~~p-~~~~~~~~~~~~~~i-~~~~~~~~~~---g~~~v~~~-----g 145 (252)
T 1ka9_F 83 GVRSLE-------DARKLLLSGADKVSVNSAAVRRP-ELIRELADHFGAQAV-VLAIDARWRG---DFPEVHVA-----G 145 (252)
T ss_dssp SCCSHH-------HHHHHHHHTCSEEEECHHHHHCT-HHHHHHHHHHCGGGE-EEEEEEEEET---TEEEEEET-----T
T ss_pred CcCCHH-------HHHHHHHcCCCEEEEChHHHhCc-HHHHHHHHHcCCCcE-EEEEEEecCC---CCEEEEEC-----C
Confidence 333322 233333569998753 2222221 234555554443222 2333332100 22221221 1
Q ss_pred CccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCC
Q 013861 317 DKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKM 396 (435)
Q Consensus 317 DRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G~ 396 (435)
-...- ..+..|.+++++ +.|++.+.+...+..-....+-++.++++++.+++||.| .|-
T Consensus 146 ~~~~~---~~~~~e~~~~~~---~~G~~~i~~~~~~~~g~~~g~~~~~i~~l~~~~~ipvia---------------~GG 204 (252)
T 1ka9_F 146 GRVPT---GLHAVEWAVKGV---ELGAGEILLTSMDRDGTKEGYDLRLTRMVAEAVGVPVIA---------------SGG 204 (252)
T ss_dssp TTEEE---EEEHHHHHHHHH---HHTCCEEEEEETTTTTTCSCCCHHHHHHHHHHCSSCEEE---------------ESC
T ss_pred Ccccc---CCcHHHHHHHHH---HcCCCEEEEecccCCCCcCCCCHHHHHHHHHHcCCCEEE---------------eCC
Confidence 11100 113345455544 379998875433322222234599999999999999976 344
Q ss_pred CchhhHHHHHHHHHHHhcccEee
Q 013861 397 IDEQRVMMESLMCLRRAGADIIL 419 (435)
Q Consensus 397 ide~~~v~Esl~~ikRAGAd~Ii 419 (435)
+... |-+..++.+|||.++
T Consensus 205 I~~~----~d~~~~~~~Gadgv~ 223 (252)
T 1ka9_F 205 AGRM----EHFLEAFQAGAEAAL 223 (252)
T ss_dssp CCSH----HHHHHHHHTTCSEEE
T ss_pred CCCH----HHHHHHHHCCCHHHH
Confidence 4432 233334467888755
No 163
>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}
Probab=62.29 E-value=10 Score=36.32 Aligned_cols=108 Identities=20% Similarity=0.308 Sum_probs=70.8
Q ss_pred CCCccccHHHHHHHHHHHHHHHHcCCCeecCCCC------C--CchHHHHHHHHHHCCCCCceeechhhhhcccccccch
Q 013861 235 EDGVIMNDETVHQLCKQAVSQARAGADVVSPSDM------M--DGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFR 306 (435)
Q Consensus 235 e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDM------M--DGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFR 306 (435)
+||.|| -+.++.|+ --+.++|+|-|.+.+. | +=|...++.+.+..+ .+++|+.=..
T Consensus 14 ~dg~iD-~~~l~~lv---~~li~~Gv~gi~v~GttGE~~~Ls~~Er~~v~~~~~~~~~-grvpviaGvg----------- 77 (297)
T 2rfg_A 14 INGQVD-EKALAGLV---DWQIKHGAHGLVPVGTTGESPTLTEEEHKRVVALVAEQAQ-GRVPVIAGAG----------- 77 (297)
T ss_dssp ETTEEC-HHHHHHHH---HHHHHTTCSEEECSSGGGTGGGSCHHHHHHHHHHHHHHHT-TSSCBEEECC-----------
T ss_pred CCCCcC-HHHHHHHH---HHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHhC-CCCeEEEccC-----------
Confidence 467776 33444444 3456789998877653 2 347777777777654 3677764321
Q ss_pred hhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCch-------HHHHHHHHhhCCCCeEEE
Q 013861 307 EALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPY-------LDVIRLLRDKYPLPIAAY 379 (435)
Q Consensus 307 dA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~Y-------LDIIr~vk~~~~lPvaaY 379 (435)
+ .|.+|+++.++.=.+-|||.+| |=|-..| .+=.+.+.+.+++||..|
T Consensus 78 ----~--------------~~t~~ai~la~~A~~~Gadavl-------v~~P~y~~~s~~~l~~~f~~va~a~~lPiilY 132 (297)
T 2rfg_A 78 ----S--------------NNPVEAVRYAQHAQQAGADAVL-------CVAGYYNRPSQEGLYQHFKMVHDAIDIPIIVY 132 (297)
T ss_dssp ----C--------------SSHHHHHHHHHHHHHHTCSEEE-------ECCCTTTCCCHHHHHHHHHHHHHHCSSCEEEE
T ss_pred ----C--------------CCHHHHHHHHHHHHhcCCCEEE-------EcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 1 2568888877776677999999 5443211 344457778889999999
Q ss_pred Eech
Q 013861 380 QVSG 383 (435)
Q Consensus 380 qVSG 383 (435)
++-|
T Consensus 133 n~P~ 136 (297)
T 2rfg_A 133 NIPP 136 (297)
T ss_dssp ECHH
T ss_pred eCcc
Confidence 9754
No 164
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=62.26 E-value=28 Score=27.40 Aligned_cols=65 Identities=26% Similarity=0.294 Sum_probs=46.6
Q ss_pred CHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhh---CCCCeEEEEechHHHHHHHHHHCCCCc
Q 013861 327 NYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDK---YPLPIAAYQVSGEYSMIKAGGALKMID 398 (435)
Q Consensus 327 N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~---~~lPvaaYqVSGEYaMikaAa~~G~id 398 (435)
|..||+..... +.-|+|+... .=|++.-+++++.+|+. ..+|+...--.++......+.+.|..|
T Consensus 36 ~~~~al~~~~~---~~~dlvl~D~----~lp~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~~~~~ga~~ 103 (136)
T 3t6k_A 36 SGEEALQQIYK---NLPDALICDV----LLPGIDGYTLCKRVRQHPLTKTLPILMLTAQGDISAKIAGFEAGAND 103 (136)
T ss_dssp SHHHHHHHHHH---SCCSEEEEES----CCSSSCHHHHHHHHHHSGGGTTCCEEEEECTTCHHHHHHHHHHTCSE
T ss_pred CHHHHHHHHHh---CCCCEEEEeC----CCCCCCHHHHHHHHHcCCCcCCccEEEEecCCCHHHHHHHHhcCcce
Confidence 66777766543 4579888211 23777889999999974 369999888777777777777777654
No 165
>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti}
Probab=62.26 E-value=10 Score=36.05 Aligned_cols=108 Identities=18% Similarity=0.291 Sum_probs=70.7
Q ss_pred CCCccccHHHHHHHHHHHHHHHHcCCCeecCCCC------C--CchHHHHHHHHHHCCCCCceeechhhhhcccccccch
Q 013861 235 EDGVIMNDETVHQLCKQAVSQARAGADVVSPSDM------M--DGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFR 306 (435)
Q Consensus 235 e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDM------M--DGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFR 306 (435)
+||.|| -+.++.|++ -+.++|+|-|.+.+. | +=|...++.+.+..+ .+++|+.-..
T Consensus 14 ~dg~iD-~~~l~~lv~---~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~-gr~pviaGvg----------- 77 (292)
T 2vc6_A 14 ADDRID-EVALHDLVE---WQIEEGSFGLVPCGTTGESPTLSKSEHEQVVEITIKTAN-GRVPVIAGAG----------- 77 (292)
T ss_dssp ETTEEC-HHHHHHHHH---HHHHTTCSEEETTSGGGTGGGSCHHHHHHHHHHHHHHHT-TSSCBEEECC-----------
T ss_pred CCCCcC-HHHHHHHHH---HHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhC-CCCcEEEecC-----------
Confidence 467776 334444444 456789999877653 2 247777777777654 3677765422
Q ss_pred hhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCch----HHHH---HHHHhhCCCCeEEE
Q 013861 307 EALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPY----LDVI---RLLRDKYPLPIAAY 379 (435)
Q Consensus 307 dA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~Y----LDII---r~vk~~~~lPvaaY 379 (435)
+ .|.+|+++.++.=.+-|||.+| |=|-..| -.++ +.+.+.+++||..|
T Consensus 78 ----~--------------~~t~~ai~la~~A~~~Gadavl-------v~~P~y~~~s~~~l~~~f~~ia~a~~lPiilY 132 (292)
T 2vc6_A 78 ----S--------------NSTAEAIAFVRHAQNAGADGVL-------IVSPYYNKPTQEGIYQHFKAIDAASTIPIIVY 132 (292)
T ss_dssp ----C--------------SSHHHHHHHHHHHHHTTCSEEE-------EECCCSSCCCHHHHHHHHHHHHHHCSSCEEEE
T ss_pred ----C--------------ccHHHHHHHHHHHHHcCCCEEE-------EcCCCCCCCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 1 2468888887776778999999 5443211 2344 47778899999999
Q ss_pred Eech
Q 013861 380 QVSG 383 (435)
Q Consensus 380 qVSG 383 (435)
|+-|
T Consensus 133 n~P~ 136 (292)
T 2vc6_A 133 NIPG 136 (292)
T ss_dssp ECHH
T ss_pred eCcc
Confidence 9754
No 166
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=62.18 E-value=54 Score=25.51 Aligned_cols=67 Identities=12% Similarity=0.171 Sum_probs=46.7
Q ss_pred CHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhC-CCCeEEEEechHHHHHHHHHHCCCCc
Q 013861 327 NYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMID 398 (435)
Q Consensus 327 N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~-~lPvaaYqVSGEYaMikaAa~~G~id 398 (435)
|..||+..... -++..|+|++.. --|.+.-+++++.+|+.. .+|+...--..+...+..+.+.|..+
T Consensus 35 ~~~~a~~~~~~-~~~~~dlvi~d~----~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~ 102 (143)
T 3jte_A 35 SSTEGLRIFTE-NCNSIDVVITDM----KMPKLSGMDILREIKKITPHMAVIILTGHGDLDNAILAMKEGAFE 102 (143)
T ss_dssp SHHHHHHHHHH-TTTTCCEEEEES----CCSSSCHHHHHHHHHHHCTTCEEEEEECTTCHHHHHHHHHTTCSE
T ss_pred CHHHHHHHHHh-CCCCCCEEEEeC----CCCCCcHHHHHHHHHHhCCCCeEEEEECCCCHHHHHHHHHhCcce
Confidence 56677765542 235689998221 126677899999999977 59999887777777777777777543
No 167
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=61.69 E-value=27 Score=27.44 Aligned_cols=66 Identities=15% Similarity=0.062 Sum_probs=44.6
Q ss_pred CCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCc
Q 013861 326 ANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMID 398 (435)
Q Consensus 326 ~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G~id 398 (435)
.|..||+..... +..|+|+.. - --|++.-+++++.+++...+|+...--..+-.....+.+.|..|
T Consensus 35 ~~~~~al~~~~~---~~~dlvllD---~-~l~~~~g~~l~~~l~~~~~~~ii~ls~~~~~~~~~~~~~~ga~~ 100 (136)
T 2qzj_A 35 YNCEEAIGKIFS---NKYDLIFLE---I-ILSDGDGWTLCKKIRNVTTCPIVYMTYINEDQSILNALNSGGDD 100 (136)
T ss_dssp SSHHHHHHHHHH---CCCSEEEEE---S-EETTEEHHHHHHHHHTTCCCCEEEEESCCCHHHHHHHHHTTCCE
T ss_pred CCHHHHHHHHHh---cCCCEEEEe---C-CCCCCCHHHHHHHHccCCCCCEEEEEcCCCHHHHHHHHHcCCcE
Confidence 467788776653 457998811 1 12677789999999987789988876555555555566666554
No 168
>1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1
Probab=61.52 E-value=22 Score=32.52 Aligned_cols=144 Identities=17% Similarity=0.200 Sum_probs=81.8
Q ss_pred ccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCCCceeechhhhhccc
Q 013861 221 LDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASS 300 (435)
Q Consensus 221 Lc~YTshGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMMDGrVgAIR~aLD~~Gf~~v~IMSYSaKyASa 300 (435)
|-.|-+| +++. -...|+.++.||+.|..+ |++.|+ +--+.|...++.|. ++.+.+.. .
T Consensus 4 ~~~~iDh---t~l~---p~~t~~~i~~l~~~a~~~---g~~~v~---v~~~~v~~~~~~l~-----~v~v~~v~-----~ 61 (225)
T 1mzh_A 4 VRKYIDN---AALK---PHLSEKEIEEFVLKSEEL---GIYAVC---VNPYHVKLASSIAK-----KVKVCCVI-----G 61 (225)
T ss_dssp GGGGEEE---EECC---TTCCHHHHHHHHHHHHHT---TCSEEE---ECGGGHHHHHHHCS-----SSEEEEEE-----S
T ss_pred hHhhccc---cccC---CCCCHHHHHHHHHHHHHh---CCeEEE---ECHHHHHHHHHHhc-----CCceeeEe-----c
Confidence 3345455 4452 336799999999999865 888865 33345777666663 34332211 1
Q ss_pred ccccchhhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEec-ccCCCcccCC--CchHHHHHHHHhhCCCCeE
Q 013861 301 FYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLF-SVLGSQVKPG--LPYLDVIRLLRDKYPLPIA 377 (435)
Q Consensus 301 fYGPFRdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~-~~~~~~VKPa--l~YLDIIr~vk~~~~lPva 377 (435)
| |+ |. |. ...-..+++.=++.|||.|=| .-+|. +|-+ -..++.|+.+++... |+.
T Consensus 62 ~--P~----------g~----~~----~~~k~~~~~~A~~~Gad~Id~viN~g~-~~~~~~~~~~~~i~~v~~a~~-pv~ 119 (225)
T 1mzh_A 62 F--PL----------GL----NK----TSVKVKEAVEAVRDGAQELDIVWNLSA-FKSEKYDFVVEELKEIFRETP-SAV 119 (225)
T ss_dssp T--TT----------CC----SC----HHHHHHHHHHHHHTTCSEEEEECCHHH-HHTTCHHHHHHHHHHHHHTCT-TSE
T ss_pred C--CC----------Cc----cc----hhhhHHHHHHHHHcCCCEEEEEecHHH-HhcCChHHHHHHHHHHHHHhc-Cce
Confidence 1 22 21 11 111123333334578888752 23333 2211 123456889998887 874
Q ss_pred EEEe---chHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEeehhc
Q 013861 378 AYQV---SGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTYF 422 (435)
Q Consensus 378 aYqV---SGEYaMikaAa~~G~ide~~~v~Esl~~ikRAGAd~IiTYf 422 (435)
..+ ++ +| +.+ -+.+....+..+|||+|-|..
T Consensus 120 -vKvi~e~~-----------~l-~~~-~~~~~a~~a~eaGad~I~tst 153 (225)
T 1mzh_A 120 -HKVIVETP-----------YL-NEE-EIKKAVEICIEAGADFIKTST 153 (225)
T ss_dssp -EEEECCGG-----------GC-CHH-HHHHHHHHHHHHTCSEEECCC
T ss_pred -EEEEEeCC-----------CC-CHH-HHHHHHHHHHHhCCCEEEECC
Confidence 666 44 24 444 367778888899999998764
No 169
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=61.51 E-value=40 Score=26.02 Aligned_cols=64 Identities=11% Similarity=0.071 Sum_probs=40.6
Q ss_pred CCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhC-CCCeEEEEechHHHHHHHHHHCCC
Q 013861 326 ANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKM 396 (435)
Q Consensus 326 ~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~-~lPvaaYqVSGEYaMikaAa~~G~ 396 (435)
.|..||+..... +.-|+|+... --|.+.-+++++.+|+.. .+|+...--..+-.....+.+.|.
T Consensus 38 ~~~~~a~~~l~~---~~~dlvi~d~----~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~ 102 (137)
T 3hdg_A 38 GDGEEGERLFGL---HAPDVIITDI----RMPKLGGLEMLDRIKAGGAKPYVIVISAFSEMKYFIKAIELGV 102 (137)
T ss_dssp SSHHHHHHHHHH---HCCSEEEECS----SCSSSCHHHHHHHHHHTTCCCEEEECCCCCCHHHHHHHHHHCC
T ss_pred CCHHHHHHHHhc---cCCCEEEEeC----CCCCCCHHHHHHHHHhcCCCCcEEEEecCcChHHHHHHHhCCc
Confidence 367787776654 4589999211 126667799999999876 588877654444334444444443
No 170
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=61.41 E-value=27 Score=26.37 Aligned_cols=66 Identities=14% Similarity=0.065 Sum_probs=43.8
Q ss_pred CCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCc
Q 013861 326 ANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMID 398 (435)
Q Consensus 326 ~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G~id 398 (435)
.|..||+..... +..|+++... --|++.-+++++.+++...+|+...--+++......+.+.|..|
T Consensus 34 ~~~~~a~~~~~~---~~~dlvi~D~----~l~~~~g~~~~~~l~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~ 99 (123)
T 1xhf_A 34 TDGAEMHQILSE---YDINLVIMDI----NLPGKNGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADD 99 (123)
T ss_dssp SSHHHHHHHHHH---SCCSEEEECS----SCSSSCHHHHHHHHHHHCCCEEEEEESCCSHHHHHHHHHHTCSE
T ss_pred CCHHHHHHHHhc---CCCCEEEEcC----CCCCCCHHHHHHHHHhCCCCcEEEEECCCChHHHHHHHhcCcce
Confidence 466777766543 4689988211 12666778999999988778888876666655555555555433
No 171
>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*
Probab=61.12 E-value=21 Score=37.78 Aligned_cols=44 Identities=7% Similarity=-0.000 Sum_probs=29.2
Q ss_pred HHhcccccccEEecccCC------Cccc----CCCchHHHHHHHHhhCCCCeEE
Q 013861 335 AQADESEGADILLFSVLG------SQVK----PGLPYLDVIRLLRDKYPLPIAA 378 (435)
Q Consensus 335 ~~~D~~EGADilM~~~~~------~~VK----Pal~YLDIIr~vk~~~~lPvaa 378 (435)
...-+++|+|++=.+..+ ..++ |...+++.++.+|+.+++||.+
T Consensus 243 ~~~~l~~~~d~~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pvi~ 296 (729)
T 1o94_A 243 FVEMADSLVDMWDITIGDIAEWGEDAGPSRFYQQGHTIPWVKLVKQVSKKPVLG 296 (729)
T ss_dssp HHHHHGGGCSEEEEEECCSTTGGGTSCCTTTCCTTTTHHHHHHHHTTCSSCEEC
T ss_pred HHHHHHhhcCEEEEeeecccccccccCCccccCccccHHHHHHHHHHCCCEEEE
Confidence 334456689987655432 1122 2233699999999999999885
No 172
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=60.96 E-value=11 Score=35.87 Aligned_cols=109 Identities=16% Similarity=0.227 Sum_probs=72.6
Q ss_pred cCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCC------C--CchHHHHHHHHHHCCCCCceeechhhhhcccccccc
Q 013861 234 REDGVIMNDETVHQLCKQAVSQARAGADVVSPSDM------M--DGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPF 305 (435)
Q Consensus 234 ~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDM------M--DGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPF 305 (435)
++||.|| -+.++.|++ -+.++|+|-|.+.+. | +=|...++.+.+..+ .+++|+.-..
T Consensus 14 ~~dg~iD-~~~l~~lv~---~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~-gr~pviaGvg---------- 78 (292)
T 2ojp_A 14 DEKGNVC-RASLKKLID---YHVASGTSAIVSVGTTGESATLNHDEHADVVMMTLDLAD-GRIPVIAGTG---------- 78 (292)
T ss_dssp CTTSCBC-HHHHHHHHH---HHHHHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHT-TSSCEEEECC----------
T ss_pred CCCCCcC-HHHHHHHHH---HHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHhC-CCCcEEEecC----------
Confidence 3567887 344444444 456689999877553 2 347778888887754 3677775421
Q ss_pred hhhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCch-------HHHHHHHHhhCCCCeEE
Q 013861 306 REALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPY-------LDVIRLLRDKYPLPIAA 378 (435)
Q Consensus 306 RdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~Y-------LDIIr~vk~~~~lPvaa 378 (435)
+ .|.+|+++.++.=.+-|||.+| |=|-..| .+=.+.+.+.+++||..
T Consensus 79 -----~--------------~~t~~ai~la~~a~~~Gadavl-------v~~P~y~~~s~~~l~~~f~~ia~a~~lPiil 132 (292)
T 2ojp_A 79 -----A--------------NATAEAISLTQRFNDSGIVGCL-------TVTPYYNRPSQEGLYQHFKAIAEHTDLPQIL 132 (292)
T ss_dssp -----C--------------SSHHHHHHHHHHTTTSSCSEEE-------EECCCSSCCCHHHHHHHHHHHHTTCSSCEEE
T ss_pred -----C--------------ccHHHHHHHHHHHHhcCCCEEE-------ECCCCCCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 1 2578999888877778999999 5443211 34445677888999999
Q ss_pred EEech
Q 013861 379 YQVSG 383 (435)
Q Consensus 379 YqVSG 383 (435)
||+-|
T Consensus 133 Yn~P~ 137 (292)
T 2ojp_A 133 YNVPS 137 (292)
T ss_dssp ECCHH
T ss_pred EeCcc
Confidence 99744
No 173
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=60.85 E-value=28 Score=31.26 Aligned_cols=44 Identities=30% Similarity=0.425 Sum_probs=30.2
Q ss_pred HHHHHHHHHhcccccccEEecccCCCcccCCC----chHHHHHHHHhhCCCCeEE
Q 013861 328 YREALVEAQADESEGADILLFSVLGSQVKPGL----PYLDVIRLLRDKYPLPIAA 378 (435)
Q Consensus 328 ~~EAlre~~~D~~EGADilM~~~~~~~VKPal----~YLDIIr~vk~~~~lPvaa 378 (435)
..|.+++++ +.|+|.+.++. +++.. +-++.++++++..++||.+
T Consensus 153 ~~e~~~~~~---~~G~~~i~~~~----~~~~g~~~g~~~~~~~~l~~~~~ipvia 200 (253)
T 1thf_D 153 LRDWVVEVE---KRGAGEILLTS----IDRDGTKSGYDTEMIRFVRPLTTLPIIA 200 (253)
T ss_dssp HHHHHHHHH---HTTCSEEEEEE----TTTTTSCSCCCHHHHHHHGGGCCSCEEE
T ss_pred HHHHHHHHH---HCCCCEEEEEe----ccCCCCCCCCCHHHHHHHHHhcCCCEEE
Confidence 455555554 37999877432 23333 3499999999999999976
No 174
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=60.76 E-value=11 Score=36.11 Aligned_cols=115 Identities=18% Similarity=0.299 Sum_probs=71.4
Q ss_pred cCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCC------C--CchHHHHHHHHHHCCCCCceeechhhhhcccccccc
Q 013861 234 REDGVIMNDETVHQLCKQAVSQARAGADVVSPSDM------M--DGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPF 305 (435)
Q Consensus 234 ~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDM------M--DGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPF 305 (435)
++||.||- +.++.|++ -+.++|+|-|.+.+. | +=|...++.+.+..+ .+++|+.=..
T Consensus 25 ~~dg~iD~-~~l~~lv~---~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~-grvpViaGvg---------- 89 (301)
T 1xky_A 25 DINGNIDF-AKTTKLVN---YLIDNGTTAIVVGGTTGESPTLTSEEKVALYRHVVSVVD-KRVPVIAGTG---------- 89 (301)
T ss_dssp CTTSSBCH-HHHHHHHH---HHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHT-TSSCEEEECC----------
T ss_pred CCCCCcCH-HHHHHHHH---HHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhC-CCceEEeCCC----------
Confidence 35788873 34444443 456789998876553 2 347777787777654 3677764422
Q ss_pred hhhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCc-hHHHHHHHHhhCCCCeEEEEech
Q 013861 306 REALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLP-YLDVIRLLRDKYPLPIAAYQVSG 383 (435)
Q Consensus 306 RdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~-YLDIIr~vk~~~~lPvaaYqVSG 383 (435)
+ .|.+|+++.++.=.+-|||.+|. +--...||..- ..+=.+.+.+.+++||..|++-|
T Consensus 90 -----~--------------~~t~~ai~la~~A~~~Gadavlv-~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P~ 148 (301)
T 1xky_A 90 -----S--------------NNTHASIDLTKKATEVGVDAVML-VAPYYNKPSQEGMYQHFKAIAESTPLPVMLYNVPG 148 (301)
T ss_dssp -----C--------------SCHHHHHHHHHHHHHTTCSEEEE-ECCCSSCCCHHHHHHHHHHHHHTCSSCEEEEECHH
T ss_pred -----C--------------CCHHHHHHHHHHHHhcCCCEEEE-cCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence 1 25688888777766789999991 11111232110 13344577788899999999754
No 175
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=60.64 E-value=48 Score=29.01 Aligned_cols=91 Identities=21% Similarity=0.212 Sum_probs=57.8
Q ss_pred HHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCc
Q 013861 159 LVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGV 238 (435)
Q Consensus 159 l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTshGHcGIv~e~g~ 238 (435)
..+.++.+.+.|+..|+++++-+ +..+ .|+-...++.+++.. ++-|++ +|-
T Consensus 156 ~~e~~~~~~~~G~d~i~~~~~~~----~g~~------~~~~~~~i~~l~~~~-~~pvia------------------~GG 206 (253)
T 1h5y_A 156 AVKWAKEVEELGAGEILLTSIDR----DGTG------LGYDVELIRRVADSV-RIPVIA------------------SGG 206 (253)
T ss_dssp HHHHHHHHHHHTCSEEEEEETTT----TTTC------SCCCHHHHHHHHHHC-SSCEEE------------------ESC
T ss_pred HHHHHHHHHhCCCCEEEEecccC----CCCc------CcCCHHHHHHHHHhc-CCCEEE------------------eCC
Confidence 67788899999999999998522 2221 123356778887753 332222 255
Q ss_pred cccHHHHHHHHHHHHHHHHcCCCeec-CCCCCCc--hHHHHHHHHHHCCC
Q 013861 239 IMNDETVHQLCKQAVSQARAGADVVS-PSDMMDG--RVGAIRAALDAEGF 285 (435)
Q Consensus 239 IdND~Tv~~Lak~Avs~A~AGADiVA-PSDMMDG--rVgAIR~aLD~~Gf 285 (435)
|.+-+.+..+ .++|||.|. -|..+.+ .+..+++.|+++||
T Consensus 207 i~~~~~~~~~-------~~~Ga~~v~vgsal~~~~~~~~~~~~~l~~~g~ 249 (253)
T 1h5y_A 207 AGRVEHFYEA-------AAAGADAVLAASLFHFRVLSIAQVKRYLKERGV 249 (253)
T ss_dssp CCSHHHHHHH-------HHTTCSEEEESHHHHTTSSCHHHHHHHHHHTTC
T ss_pred CCCHHHHHHH-------HHcCCcHHHHHHHHHcCCCCHHHHHHHHHHcCC
Confidence 5554555442 257999653 3444444 37899999999998
No 176
>3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A*
Probab=60.49 E-value=19 Score=35.28 Aligned_cols=97 Identities=19% Similarity=0.266 Sum_probs=65.5
Q ss_pred hHHHHHHHHHHcCCCeEEEeec---------CC--CCCCCcccCcCcCCCCCHHHHHHHHHHHCC-CeEEEeeecccCCC
Q 013861 158 GLVQEVAKARDVGVNSVVLFPK---------VP--DALKSPTGDEAYNDNGLVPRTIWLLKDRYP-DLVIYTDVALDPYS 225 (435)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgv---------i~--~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~P-dl~IitDVcLc~YT 225 (435)
...+-++.+.+.|...|-|.+- =| +.-.|+.|..--|.--++...|+.+++.++ |..|..-+..+.|.
T Consensus 159 ~f~~aA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr~avg~d~pV~vRis~~~~~ 238 (363)
T 3l5l_A 159 DFVDAARRARDAGFEWIELHFAHGYLGQSFFSEHSNKRTDAYGGSFDNRSRFLLETLAAVREVWPENLPLTARFGVLEYD 238 (363)
T ss_dssp HHHHHHHHHHHHTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHTTSCTTSCEEEEEEEECSS
T ss_pred HHHHHHHHHHHcCCCEEEEccccchHHHHccCCCcCCCCcccCcCHHHHHHHHHHHHHHHHHHcCCCceEEEEecchhcC
Confidence 4566677788999999999762 02 224566665433333356678999999986 77788777766552
Q ss_pred CCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCC
Q 013861 226 SDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSD 267 (435)
Q Consensus 226 shGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSD 267 (435)
. +| +.|++...+.|-.+.++|+|.|--|.
T Consensus 239 ~---------~G----~~~~~~~~~la~~L~~~Gvd~i~vs~ 267 (363)
T 3l5l_A 239 G---------RD----EQTLEESIELARRFKAGGLDLLSVSV 267 (363)
T ss_dssp S---------CH----HHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred C---------CC----CCCHHHHHHHHHHHHHcCCCEEEEec
Confidence 2 22 13555666677778899999998664
No 177
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=60.36 E-value=53 Score=26.31 Aligned_cols=64 Identities=16% Similarity=0.173 Sum_probs=42.0
Q ss_pred CHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhh---CCCCeEEEEechHHHHHHHHHHCCCC
Q 013861 327 NYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDK---YPLPIAAYQVSGEYSMIKAGGALKMI 397 (435)
Q Consensus 327 N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~---~~lPvaaYqVSGEYaMikaAa~~G~i 397 (435)
|..||+..... +.-|+|++.. -=|.+.-+++++.+|+. ..+|+...--..+-..+..+.+.|..
T Consensus 39 ~~~~al~~l~~---~~~dlii~D~----~l~~~~g~~~~~~lr~~~~~~~~pii~~s~~~~~~~~~~~~~~g~~ 105 (154)
T 3gt7_A 39 NGREAVRFLSL---TRPDLIISDV----LMPEMDGYALCRWLKGQPDLRTIPVILLTILSDPRDVVRSLECGAD 105 (154)
T ss_dssp SHHHHHHHHTT---CCCSEEEEES----CCSSSCHHHHHHHHHHSTTTTTSCEEEEECCCSHHHHHHHHHHCCS
T ss_pred CHHHHHHHHHh---CCCCEEEEeC----CCCCCCHHHHHHHHHhCCCcCCCCEEEEECCCChHHHHHHHHCCCC
Confidence 56677766542 4589998211 12667789999999986 46899987765555555555555543
No 178
>3o1n_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, lyase; 1.03A {Salmonella enterica subsp} PDB: 3s42_A 3l2i_A* 3lb0_A 4guf_A 4gug_A* 4guh_A* 3nnt_A* 4guj_A* 3m7w_A 3oex_A 4gfs_A* 4gui_A* 1gqn_A 1l9w_A* 1qfe_A*
Probab=60.06 E-value=22 Score=34.12 Aligned_cols=100 Identities=16% Similarity=0.207 Sum_probs=61.7
Q ss_pred CCCCCCHHHHHHHHHhcccccccEEeccc--CCCcccCCCchHHHHHHHHhhC-CCCeE-EEE---------echH--HH
Q 013861 322 QMNPANYREALVEAQADESEGADILLFSV--LGSQVKPGLPYLDVIRLLRDKY-PLPIA-AYQ---------VSGE--YS 386 (435)
Q Consensus 322 Qmdp~N~~EAlre~~~D~~EGADilM~~~--~~~~VKPal~YLDIIr~vk~~~-~lPva-aYq---------VSGE--Ya 386 (435)
.+-..+..|++.++..=.+.|||+|=+-+ |.. ..+.-.-.+.++.+|+.+ ++|+. .|- .|-| ..
T Consensus 45 ~l~~~~~~e~~~~~~~~~~~gaD~VElRvD~l~~-~~~~~~v~~~l~~lr~~~~~~PiI~T~Rt~~eGG~~~~~~~~~~~ 123 (276)
T 3o1n_A 45 SLMGKTITDVKSEALAYREADFDILEWRVDHFAN-VTTAESVLEAAGAIREIITDKPLLFTFRSAKEGGEQALTTGQYID 123 (276)
T ss_dssp EECCSSHHHHHHHHHHHTTSCCSEEEEEGGGCTT-TTCHHHHHHHHHHHHHHCCSSCEEEECCBGGGTCSBCCCHHHHHH
T ss_pred EeCCCCHHHHHHHHHHHhhCCCCEEEEEeccccc-cCcHHHHHHHHHHHHHhcCCCCEEEEEEEhhhCCCCCCCHHHHHH
Confidence 44556778877776554458999985211 110 111123456778888887 79954 333 3322 45
Q ss_pred HHHHHHHCC---CCchh----hHHHHHH-HHHHHhcccEeehhc
Q 013861 387 MIKAGGALK---MIDEQ----RVMMESL-MCLRRAGADIILTYF 422 (435)
Q Consensus 387 MikaAa~~G---~ide~----~~v~Esl-~~ikRAGAd~IiTYf 422 (435)
.++.|.+.| ++|-| +-.+..+ ...++.|..+|++|+
T Consensus 124 ll~~~l~~g~~dyIDvEl~~~~~~~~~l~~~a~~~~~kvI~S~H 167 (276)
T 3o1n_A 124 LNRAAVDSGLVDMIDLELFTGDDEVKATVGYAHQHNVAVIMSNH 167 (276)
T ss_dssp HHHHHHHHTCCSEEEEEGGGCHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHHHhcCCCCEEEEECcCCHHHHHHHHHHHHhCCCEEEEEee
Confidence 888888888 56654 2233334 345889999999998
No 179
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=60.04 E-value=44 Score=25.03 Aligned_cols=66 Identities=20% Similarity=0.115 Sum_probs=45.0
Q ss_pred CCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhC-CCCeEEEEechHHHHHHHHHHCCCCc
Q 013861 326 ANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMID 398 (435)
Q Consensus 326 ~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~-~lPvaaYqVSGEYaMikaAa~~G~id 398 (435)
.|..||+..... +..|+++... --|.+.-+++++.+++.. .+|+....-.++......+.+.|..|
T Consensus 31 ~~~~~a~~~~~~---~~~dlil~D~----~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~ 97 (121)
T 2pl1_A 31 EDAKEADYYLNE---HIPDIAIVDL----GLPDEDGLSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADD 97 (121)
T ss_dssp SSHHHHHHHHHH---SCCSEEEECS----CCSSSCHHHHHHHHHHTTCCSCEEEEESCCCHHHHHHHHHTTCSE
T ss_pred CCHHHHHHHHhc---cCCCEEEEec----CCCCCCHHHHHHHHHhcCCCCCEEEEecCCCHHHHHHHHHcCccc
Confidence 366677766543 3479888111 126667789999999865 69999887777666666666776644
No 180
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=59.93 E-value=35 Score=26.48 Aligned_cols=66 Identities=11% Similarity=-0.002 Sum_probs=45.6
Q ss_pred CCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhC-CCCeEEEEechHHHHHHHHHHCCCCc
Q 013861 326 ANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMID 398 (435)
Q Consensus 326 ~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~-~lPvaaYqVSGEYaMikaAa~~G~id 398 (435)
.|..||+..... +.-|+++... .=|++.-+++++.+++.. .+|+...--..+......+.+.|..|
T Consensus 34 ~~~~~al~~~~~---~~~dlvl~D~----~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~ 100 (132)
T 3crn_A 34 ATAGEGLAKIEN---EFFNLALFXI----KLPDMEGTELLEKAHKLRPGMKKIMVTGYASLENSVFSLNAGADA 100 (132)
T ss_dssp SSHHHHHHHHHH---SCCSEEEECS----BCSSSBHHHHHHHHHHHCTTSEEEEEESCCCHHHHHHHHHTTCSE
T ss_pred CCHHHHHHHHhc---CCCCEEEEec----CCCCCchHHHHHHHHhhCCCCcEEEEeccccHHHHHHHHhccchh
Confidence 366777766553 4579988111 126777899999999865 68998877666666666677777654
No 181
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A
Probab=59.92 E-value=11 Score=37.50 Aligned_cols=57 Identities=30% Similarity=0.368 Sum_probs=38.4
Q ss_pred cccccEEecc-cCCCcccCCCchHHHHHHHHhhC-CCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccE
Q 013861 340 SEGADILLFS-VLGSQVKPGLPYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADI 417 (435)
Q Consensus 340 ~EGADilM~~-~~~~~VKPal~YLDIIr~vk~~~-~lPvaaYqVSGEYaMikaAa~~G~ide~~~v~Esl~~ikRAGAd~ 417 (435)
++|+|+|.+. ..| -| -.++|.|+.+|+.+ ++||.+-+|. + .|....+.+||||+
T Consensus 118 eaGvd~I~idta~G---~~-~~~~~~I~~ik~~~p~v~Vi~G~v~---------------t-----~e~A~~a~~aGAD~ 173 (366)
T 4fo4_A 118 EAGVDVLLIDSSHG---HS-EGVLQRIRETRAAYPHLEIIGGNVA---------------T-----AEGARALIEAGVSA 173 (366)
T ss_dssp HTTCSEEEEECSCT---TS-HHHHHHHHHHHHHCTTCEEEEEEEC---------------S-----HHHHHHHHHHTCSE
T ss_pred hCCCCEEEEeCCCC---CC-HHHHHHHHHHHHhcCCCceEeeeeC---------------C-----HHHHHHHHHcCCCE
Confidence 6799999832 112 12 25789999999998 7999886552 1 12334456788888
Q ss_pred eeh
Q 013861 418 ILT 420 (435)
Q Consensus 418 IiT 420 (435)
|..
T Consensus 174 I~v 176 (366)
T 4fo4_A 174 VKV 176 (366)
T ss_dssp EEE
T ss_pred EEE
Confidence 875
No 182
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=59.66 E-value=46 Score=25.62 Aligned_cols=66 Identities=14% Similarity=0.202 Sum_probs=46.2
Q ss_pred CCHHHHHHHHHhcccccccEEecccCCCcccC-----CCchHHHHHHHHhhC-CCCeEEEEechHHHHHHHHHHCCCCc
Q 013861 326 ANYREALVEAQADESEGADILLFSVLGSQVKP-----GLPYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMID 398 (435)
Q Consensus 326 ~N~~EAlre~~~D~~EGADilM~~~~~~~VKP-----al~YLDIIr~vk~~~-~lPvaaYqVSGEYaMikaAa~~G~id 398 (435)
.|..||+..... ...|+|++.. . -| .+.-+++++.+++.. .+|+..+--..+...+..+.+.|..+
T Consensus 34 ~~~~~a~~~l~~---~~~dlvi~d~---~-~~~~~~~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~ 105 (140)
T 2qr3_A 34 SSPVSLSTVLRE---ENPEVVLLDM---N-FTSGINNGNEGLFWLHEIKRQYRDLPVVLFTAYADIDLAVRGIKEGASD 105 (140)
T ss_dssp CCHHHHHHHHHH---SCEEEEEEET---T-TTC-----CCHHHHHHHHHHHCTTCCEEEEEEGGGHHHHHHHHHTTCCE
T ss_pred CCHHHHHHHHHc---CCCCEEEEeC---C-cCCCCCCCccHHHHHHHHHhhCcCCCEEEEECCCCHHHHHHHHHcCchh
Confidence 467777776654 3589998221 1 13 566789999999876 69999988777777777777777644
No 183
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*
Probab=59.47 E-value=12 Score=35.79 Aligned_cols=115 Identities=23% Similarity=0.316 Sum_probs=72.8
Q ss_pred CCCccccHHHHHHHHHHHHHHHHcCCCeecCCCC--------CCchHHHHHHHHHHCCCCCceeechhhhhcccccccch
Q 013861 235 EDGVIMNDETVHQLCKQAVSQARAGADVVSPSDM--------MDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFR 306 (435)
Q Consensus 235 e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDM--------MDGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFR 306 (435)
+||.|| -+.++.|.+ -+.++|+|-|.+.+. .+=|...++.+.+..+-.+++|+.-..
T Consensus 21 ~dg~iD-~~~l~~lv~---~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~g~rvpviaGvg----------- 85 (301)
T 3m5v_A 21 KNGKVD-EQSYARLIK---RQIENGIDAVVPVGTTGESATLTHEEHRTCIEIAVETCKGTKVKVLAGAG----------- 85 (301)
T ss_dssp ETTEEC-HHHHHHHHH---HHHHTTCCEEECSSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEEECC-----------
T ss_pred CCCCCC-HHHHHHHHH---HHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCCeEEEeCC-----------
Confidence 357776 344444444 456799998877543 245677777777776523677775421
Q ss_pred hhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCc-hHHHHHHHHhhCCCCeEEEEech
Q 013861 307 EALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLP-YLDVIRLLRDKYPLPIAAYQVSG 383 (435)
Q Consensus 307 dA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~-YLDIIr~vk~~~~lPvaaYqVSG 383 (435)
+ .|.+|++..++.=.+-|||.+| .+--...||..- -.+=.+.+.+.+++||.-||+-+
T Consensus 86 ----~--------------~~t~~ai~la~~a~~~Gadavl-v~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P~ 144 (301)
T 3m5v_A 86 ----S--------------NATHEAVGLAKFAKEHGADGIL-SVAPYYNKPTQQGLYEHYKAIAQSVDIPVLLYNVPG 144 (301)
T ss_dssp ----C--------------SSHHHHHHHHHHHHHTTCSEEE-EECCCSSCCCHHHHHHHHHHHHHHCSSCEEEEECHH
T ss_pred ----C--------------CCHHHHHHHHHHHHHcCCCEEE-EcCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCch
Confidence 1 2588888888877788999999 111112233210 13444567788899999999855
No 184
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=59.38 E-value=25 Score=26.70 Aligned_cols=66 Identities=21% Similarity=0.334 Sum_probs=43.9
Q ss_pred CCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhC-CCCeEEEEechHHHHHHHHHHCCCCc
Q 013861 326 ANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMID 398 (435)
Q Consensus 326 ~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~-~lPvaaYqVSGEYaMikaAa~~G~id 398 (435)
.|..||+..... ...|+++... --|++.-+++++.+++.. .+|+...--.++......+.+.|..+
T Consensus 34 ~~~~~a~~~~~~---~~~dlvl~D~----~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~ 100 (124)
T 1srr_A 34 ANGLQALDIVTK---ERPDLVLLDM----KIPGMDGIEILKRMKVIDENIRVIIMTAYGELDMIQESKELGALT 100 (124)
T ss_dssp SSHHHHHHHHHH---HCCSEEEEES----CCTTCCHHHHHHHHHHHCTTCEEEEEESSCCHHHHHHHHHHTCCC
T ss_pred CCHHHHHHHHhc---cCCCEEEEec----CCCCCCHHHHHHHHHHhCCCCCEEEEEccCchHHHHHHHhcChHh
Confidence 366777776653 3579988111 127777899999999865 58998876655555555555555543
No 185
>1sfl_A 3-dehydroquinate dehydratase; 3-dehydroquinase, enzyme turnover, shikimate pathway, lyase; 1.90A {Staphylococcus aureus subsp} SCOP: c.1.10.1 PDB: 1sfj_A*
Probab=59.35 E-value=15 Score=34.18 Aligned_cols=96 Identities=15% Similarity=0.247 Sum_probs=54.0
Q ss_pred CCHHHHHHHHHhcccccccEEecccCCCcccCCC-chHHHHHHHHhhC-CCCe-EEEEech----------HH-HHHHHH
Q 013861 326 ANYREALVEAQADESEGADILLFSVLGSQVKPGL-PYLDVIRLLRDKY-PLPI-AAYQVSG----------EY-SMIKAG 391 (435)
Q Consensus 326 ~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal-~YLDIIr~vk~~~-~lPv-aaYqVSG----------EY-aMikaA 391 (435)
.+.+|++.++..=.+.|||+|=+-+=-- -.+.. .-.++++.+|+.. ++|+ +.|.-.. || ..++.+
T Consensus 14 ~~~~e~~~~~~~~~~~~~D~vElRvD~l-~~~~~~~v~~~~~~lr~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~ 92 (238)
T 1sfl_A 14 LSIEETLIQKINHRIDAIDVLELRIDQF-ENVTVDQVAEMITKLKVMQDSFKLLVTYRTKLQGGYGQFTNDSYLNLISDL 92 (238)
T ss_dssp C---CHHHHHHHHTTTTCSEEEEECTTS-TTCCHHHHHHHHHHHC---CCSEEEEECCBGGGTSCBCCCHHHHHHHHHHG
T ss_pred CCHHHHHHHHHHhhhcCCCEEEEEeccc-ccCCHHHHHHHHHHHHHhccCCCEEEEeeccccCCCCCCCHHHHHHHHHHH
Confidence 5778888888776678999986221000 11111 1244556677766 7898 4443221 23 577888
Q ss_pred HHCC---CCc-------hhhHHHHHHHHHHHhcccEeehhc
Q 013861 392 GALK---MID-------EQRVMMESLMCLRRAGADIILTYF 422 (435)
Q Consensus 392 a~~G---~id-------e~~~v~Esl~~ikRAGAd~IiTYf 422 (435)
.+.| ++| .++.+.+.....++.|..+|++|+
T Consensus 93 ~~~~~~d~iDvEl~~~~~~~~~~~l~~~~~~~~~kvI~S~H 133 (238)
T 1sfl_A 93 ANINGIDMIDIEWQADIDIEKHQRIITHLQQYNKEVIISHH 133 (238)
T ss_dssp GGCTTCCEEEEECCTTSCHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHhCCCCEEEEEccCCCChHHHHHHHHHHHhcCCEEEEEec
Confidence 8775 555 333445555566677899999998
No 186
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=59.30 E-value=56 Score=24.82 Aligned_cols=69 Identities=14% Similarity=0.138 Sum_probs=44.6
Q ss_pred CCHHHHHHHHHhcc----cccccEEecccCCCcccCCCchHHHHHHHHhhC---CCCeEEEEechHHHHHHHHHHCCCCc
Q 013861 326 ANYREALVEAQADE----SEGADILLFSVLGSQVKPGLPYLDVIRLLRDKY---PLPIAAYQVSGEYSMIKAGGALKMID 398 (435)
Q Consensus 326 ~N~~EAlre~~~D~----~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~---~lPvaaYqVSGEYaMikaAa~~G~id 398 (435)
.|..||+......- .+-.|+|+... --|.+.-+++++.+++.. .+|+..+--+.+......+.+.|..+
T Consensus 35 ~~~~~a~~~l~~~~~~~~~~~~dlvi~d~----~~~~~~g~~~~~~l~~~~~~~~~pii~ls~~~~~~~~~~~~~~g~~~ 110 (140)
T 1k68_A 35 RDGMEAMAYLRQEGEYANASRPDLILLXL----NLPKKDGREVLAEIKSDPTLKRIPVVVLSTSINEDDIFHSYDLHVNC 110 (140)
T ss_dssp CSHHHHHHHHTTCGGGGSCCCCSEEEECS----SCSSSCHHHHHHHHHHSTTGGGSCEEEEESCCCHHHHHHHHHTTCSE
T ss_pred CCHHHHHHHHHcccccccCCCCcEEEEec----CCCcccHHHHHHHHHcCcccccccEEEEecCCcHHHHHHHHHhchhh
Confidence 36677776655421 14579998211 126677899999999874 68999887666555555555655543
No 187
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Probab=59.21 E-value=24 Score=35.29 Aligned_cols=77 Identities=22% Similarity=0.245 Sum_probs=50.2
Q ss_pred hhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEe-eecccCCCCCCcceeecC
Q 013861 157 HGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYT-DVALDPYSSDGHDGIVRE 235 (435)
Q Consensus 157 ~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~Iit-DVcLc~YTshGHcGIv~e 235 (435)
....+.++.+++.|+.-|.+-. +. |. . -.+...|+.||+.+|++.||. .| .
T Consensus 99 ~~~~e~~~~a~~aGvdvI~id~--a~------G~----~-~~~~e~I~~ir~~~~~~~Vi~G~V-------------~-- 150 (361)
T 3r2g_A 99 ENELQRAEALRDAGADFFCVDV--AH------AH----A-KYVGKTLKSLRQLLGSRCIMAGNV-------------A-- 150 (361)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEC--SC------CS----S-HHHHHHHHHHHHHHTTCEEEEEEE-------------C--
T ss_pred HHHHHHHHHHHHcCCCEEEEeC--CC------CC----c-HhHHHHHHHHHHhcCCCeEEEcCc-------------C--
Confidence 3467889999999999555521 11 11 0 124578999999999988886 22 1
Q ss_pred CCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHH
Q 013861 236 DGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVG 274 (435)
Q Consensus 236 ~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMMDGrVg 274 (435)
| .+.|....++|||.|--| +--|++.
T Consensus 151 --------T----~e~A~~a~~aGaD~I~Vg-~g~G~~~ 176 (361)
T 3r2g_A 151 --------T----YAGADYLASCGADIIKAG-IGGGSVC 176 (361)
T ss_dssp --------S----HHHHHHHHHTTCSEEEEC-CSSSSCH
T ss_pred --------C----HHHHHHHHHcCCCEEEEc-CCCCcCc
Confidence 1 234667789999988753 3345554
No 188
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=59.09 E-value=18 Score=28.23 Aligned_cols=65 Identities=22% Similarity=0.292 Sum_probs=45.4
Q ss_pred CCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhC-CCCeEEEEechHHHHHHHHHHCCCCc
Q 013861 326 ANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMID 398 (435)
Q Consensus 326 ~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~-~lPvaaYqVSGEYaMikaAa~~G~id 398 (435)
.|..||+..... +..|+|+... -|.+.-+++++.+++.. .+|+...--..+...+..+.+.|..+
T Consensus 35 ~~~~~a~~~l~~---~~~dlvi~d~-----~~~~~g~~~~~~l~~~~~~~pii~ls~~~~~~~~~~~~~~g~~~ 100 (142)
T 2qxy_A 35 KNEQEAFTFLRR---EKIDLVFVDV-----FEGEESLNLIRRIREEFPDTKVAVLSAYVDKDLIINSVKAGAVD 100 (142)
T ss_dssp SSHHHHHHHHTT---SCCSEEEEEC-----TTTHHHHHHHHHHHHHCTTCEEEEEESCCCHHHHHHHHHHTCSC
T ss_pred CCHHHHHHHHhc---cCCCEEEEeC-----CCCCcHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCcce
Confidence 466777766654 4689999222 26667789999999877 59999887666666666666666543
No 189
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=59.08 E-value=11 Score=35.70 Aligned_cols=107 Identities=16% Similarity=0.148 Sum_probs=70.6
Q ss_pred CCccccHHHHHHHHHHHHHHHHcCCCeecCCCC--------CCchHHHHHHHHHHCCCCCceeechhhhhcccccccchh
Q 013861 236 DGVIMNDETVHQLCKQAVSQARAGADVVSPSDM--------MDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFRE 307 (435)
Q Consensus 236 ~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDM--------MDGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRd 307 (435)
||.|| -+.++.|++ -+.++|+|-+.+.+. .+=|...+|.+.+..+ .+++|+.-..
T Consensus 15 dg~iD-~~~l~~lv~---~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~-gr~pviaGvg------------ 77 (289)
T 2yxg_A 15 NKEVD-FDGLEENIN---FLIENGVSGIVAVGTTGESPTLSHEEHKKVIEKVVDVVN-GRVQVIAGAG------------ 77 (289)
T ss_dssp TTEEC-HHHHHHHHH---HHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHT-TSSEEEEECC------------
T ss_pred CCCcC-HHHHHHHHH---HHHHCCCCEEEECccccChhhCCHHHHHHHHHHHHHHhC-CCCcEEEeCC------------
Confidence 57776 334444444 456789998876553 2347777887777654 3677775422
Q ss_pred hhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCch-------HHHHHHHHhhCCCCeEEEE
Q 013861 308 ALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPY-------LDVIRLLRDKYPLPIAAYQ 380 (435)
Q Consensus 308 A~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~Y-------LDIIr~vk~~~~lPvaaYq 380 (435)
+ .|.+|+++.++.=.+-|||.+| |=|-..| .+=.+.+.+.+++||.-||
T Consensus 78 ---~--------------~~t~~ai~la~~a~~~Gadavl-------v~~P~y~~~s~~~l~~~f~~ia~a~~lPiilYn 133 (289)
T 2yxg_A 78 ---S--------------NCTEEAIELSVFAEDVGADAVL-------SITPYYNKPTQEGLRKHFGKVAESINLPIVLYN 133 (289)
T ss_dssp ---C--------------SSHHHHHHHHHHHHHHTCSEEE-------EECCCSSCCCHHHHHHHHHHHHHHCSSCEEEEE
T ss_pred ---C--------------CCHHHHHHHHHHHHhcCCCEEE-------ECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 1 2568888877776677999999 5433211 3444567788899999999
Q ss_pred ech
Q 013861 381 VSG 383 (435)
Q Consensus 381 VSG 383 (435)
+-|
T Consensus 134 ~P~ 136 (289)
T 2yxg_A 134 VPS 136 (289)
T ss_dssp CHH
T ss_pred Ccc
Confidence 754
No 190
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A
Probab=59.05 E-value=50 Score=32.89 Aligned_cols=46 Identities=22% Similarity=0.299 Sum_probs=32.5
Q ss_pred HHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEe
Q 013861 159 LVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYT 217 (435)
Q Consensus 159 l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~Iit 217 (435)
..+.++.+++.|+.-|.|.- .. | +++ .+...|+.||+.+|++.|+.
T Consensus 109 ~~~~~~~lieaGvd~I~idt--a~------G----~~~-~~~~~I~~ik~~~p~v~Vi~ 154 (366)
T 4fo4_A 109 NEERVKALVEAGVDVLLIDS--SH------G----HSE-GVLQRIRETRAAYPHLEIIG 154 (366)
T ss_dssp CHHHHHHHHHTTCSEEEEEC--SC------T----TSH-HHHHHHHHHHHHCTTCEEEE
T ss_pred HHHHHHHHHhCCCCEEEEeC--CC------C----CCH-HHHHHHHHHHHhcCCCceEe
Confidence 57788999999999776631 11 1 111 34568999999999987765
No 191
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0
Probab=58.96 E-value=9.6 Score=36.77 Aligned_cols=123 Identities=15% Similarity=0.226 Sum_probs=77.6
Q ss_pred HHHHCCCeEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCC--------CCchHHHHH
Q 013861 206 LKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDM--------MDGRVGAIR 277 (435)
Q Consensus 206 iK~~~Pdl~IitDVcLc~YTshGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDM--------MDGrVgAIR 277 (435)
+++.|-.++. .-+-||+.. ||.|| -+.++.|++ -+.++|+|-|.+.+. .+=|...++
T Consensus 8 ~~~~~~Gv~~---a~vTPf~~~--------dg~iD-~~~l~~lv~---~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~v~~ 72 (316)
T 3e96_A 8 LAKALETISG---IPITPFRKS--------DGSID-WHHYKETVD---RIVDNGIDVIVPCGNTSEFYALSLEEAKEEVR 72 (316)
T ss_dssp HHHHTSSEEE---CCCCCBCTT--------TCCBC-HHHHHHHHH---HHHTTTCCEECTTSGGGTGGGSCHHHHHHHHH
T ss_pred hhhcCCceEE---eeeCCccCC--------CCCCC-HHHHHHHHH---HHHHcCCCEEEeCccccCcccCCHHHHHHHHH
Confidence 5556644433 234566431 57776 344444444 456799999987763 345677788
Q ss_pred HHHHHCCCCCceeechhhhhcccccccchhhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccC
Q 013861 278 AALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKP 357 (435)
Q Consensus 278 ~aLD~~Gf~~v~IMSYSaKyASafYGPFRdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKP 357 (435)
.+.+..+ .+++|+.-.. .|.+|+++.++.=.+-|||.+| |=|
T Consensus 73 ~~v~~~~-grvpViaGvg------------------------------~~t~~ai~la~~A~~~Gadavl-------v~~ 114 (316)
T 3e96_A 73 RTVEYVH-GRALVVAGIG------------------------------YATSTAIELGNAAKAAGADAVM-------IHM 114 (316)
T ss_dssp HHHHHHT-TSSEEEEEEC------------------------------SSHHHHHHHHHHHHHHTCSEEE-------ECC
T ss_pred HHHHHhC-CCCcEEEEeC------------------------------cCHHHHHHHHHHHHhcCCCEEE-------EcC
Confidence 7877765 4778775421 0366777777766678999999 543
Q ss_pred CCch-------HHHHHHHHhhCCCCeEEEEe
Q 013861 358 GLPY-------LDVIRLLRDKYPLPIAAYQV 381 (435)
Q Consensus 358 al~Y-------LDIIr~vk~~~~lPvaaYqV 381 (435)
-..+ .+=.+.+.+.+++||..|++
T Consensus 115 P~y~~~s~~~l~~~f~~va~a~~lPiilYn~ 145 (316)
T 3e96_A 115 PIHPYVTAGGVYAYFRDIIEALDFPSLVYFK 145 (316)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHHTSCEEEEEC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCEEEEeC
Confidence 2111 34445667778999999995
No 192
>1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A*
Probab=58.72 E-value=27 Score=33.71 Aligned_cols=94 Identities=18% Similarity=0.266 Sum_probs=61.1
Q ss_pred HHHHHHHHHHcCCCeEEEeecC---------C--CCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCC
Q 013861 159 LVQEVAKARDVGVNSVVLFPKV---------P--DALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSD 227 (435)
Q Consensus 159 l~~~v~~~~~~GI~sv~LFgvi---------~--~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTsh 227 (435)
..+.++.+.+.|...|-|-+-= | +...|+.|..--|.--++.+.++.++++. +.-|...+..+.|..
T Consensus 146 ~~~aA~~a~~aGfDgVeih~~~gyLl~qFlsp~~n~R~d~yGGslenr~r~~~eiv~avr~~v-~~pv~vris~~~~~~- 223 (338)
T 1z41_A 146 FKQAAARAKEAGFDVIEIHAAHGYLIHEFLSPLSNHRTDEYGGSPENRYRFLREIIDEVKQVW-DGPLFVRVSASDYTD- 223 (338)
T ss_dssp HHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHC-CSCEEEEEECCCCST-
T ss_pred HHHHHHHHHHcCCCEEEeccccchHHHHccCCCcCCcCcccCcchhhhHHHHHHHHHHHHHHc-CCcEEEEecCcccCC-
Confidence 4556667789999999986521 2 22456666543344445678899999998 777888888776632
Q ss_pred CcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCC
Q 013861 228 GHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSD 267 (435)
Q Consensus 228 GHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSD 267 (435)
. | .+-++ ..+.|-...++|+|.|-=|+
T Consensus 224 --~------g-~~~~~----~~~~a~~l~~~Gvd~i~v~~ 250 (338)
T 1z41_A 224 --K------G-LDIAD----HIGFAKWMKEQGVDLIDCSS 250 (338)
T ss_dssp --T------S-CCHHH----HHHHHHHHHHTTCCEEEEEC
T ss_pred --C------C-CCHHH----HHHHHHHHHHcCCCEEEEec
Confidence 1 2 12222 33445556789999997654
No 193
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=58.02 E-value=30 Score=27.12 Aligned_cols=66 Identities=17% Similarity=0.180 Sum_probs=43.7
Q ss_pred CCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHh--h-CCCCeEEEEechHHHHHHHHHHCCCCc
Q 013861 326 ANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRD--K-YPLPIAAYQVSGEYSMIKAGGALKMID 398 (435)
Q Consensus 326 ~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~--~-~~lPvaaYqVSGEYaMikaAa~~G~id 398 (435)
.|..||+..... +..|+|+... --|.+.-+++++.+++ . ..+||..+--..+...+..+.+.|..+
T Consensus 39 ~~~~~a~~~l~~---~~~dlii~d~----~l~~~~g~~~~~~l~~~~~~~~~pii~ls~~~~~~~~~~~~~~g~~~ 107 (147)
T 2zay_A 39 GNAIEAVPVAVK---THPHLIITEA----NMPKISGMDLFNSLKKNPQTASIPVIALSGRATAKEEAQLLDMGFID 107 (147)
T ss_dssp SSHHHHHHHHHH---HCCSEEEEES----CCSSSCHHHHHHHHHTSTTTTTSCEEEEESSCCHHHHHHHHHHTCSE
T ss_pred CCHHHHHHHHHc---CCCCEEEEcC----CCCCCCHHHHHHHHHcCcccCCCCEEEEeCCCCHHHHHHHHhCCCCE
Confidence 366777766554 3589998221 1266778999999998 3 369999887666665555555555543
No 194
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=57.94 E-value=26 Score=31.48 Aligned_cols=19 Identities=16% Similarity=0.268 Sum_probs=16.0
Q ss_pred hHHHHHHHHhhCCCCeEEE
Q 013861 361 YLDVIRLLRDKYPLPIAAY 379 (435)
Q Consensus 361 YLDIIr~vk~~~~lPvaaY 379 (435)
.+++|+++|+.+++||..-
T Consensus 68 ~~~~i~~i~~~~~~pv~~~ 86 (248)
T 1geq_A 68 AFWIVKEFRRHSSTPIVLM 86 (248)
T ss_dssp HHHHHHHHHTTCCCCEEEE
T ss_pred HHHHHHHHHhhCCCCEEEE
Confidence 4899999999999997653
No 195
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}
Probab=57.91 E-value=11 Score=36.82 Aligned_cols=109 Identities=25% Similarity=0.232 Sum_probs=71.8
Q ss_pred cCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCC------C--CchHHHHHHHHHHCCCCCceeechhhhhcccccccc
Q 013861 234 REDGVIMNDETVHQLCKQAVSQARAGADVVSPSDM------M--DGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPF 305 (435)
Q Consensus 234 ~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDM------M--DGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPF 305 (435)
++||.|| -+.++.|++ -+.++|+|-|.+.+. | +=|...+|.+.+..+ .+++|+.=..
T Consensus 47 ~~dg~iD-~~~l~~lv~---~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~ve~~~-grvpViaGvg---------- 111 (332)
T 2r8w_A 47 DEAGRVD-IEAFSALIA---RLDAAEVDSVGILGSTGIYMYLTREERRRAIEAAATILR-GRRTLMAGIG---------- 111 (332)
T ss_dssp CTTCCBC-HHHHHHHHH---HHHHHTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHT-TSSEEEEEEC----------
T ss_pred CCCCCcC-HHHHHHHHH---HHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhC-CCCcEEEecC----------
Confidence 3567776 444555444 455689999877553 2 247777888877764 3677765422
Q ss_pred hhhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCch-------HHHHHHHHhhCCCCeEE
Q 013861 306 REALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPY-------LDVIRLLRDKYPLPIAA 378 (435)
Q Consensus 306 RdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~Y-------LDIIr~vk~~~~lPvaa 378 (435)
+ .|.+|++..++.=.+-|||.+| |=|-..| .+=.+.+.+.+++||..
T Consensus 112 -----~--------------~st~eai~la~~A~~~Gadavl-------v~~P~Y~~~s~~~l~~~f~~VA~a~~lPiil 165 (332)
T 2r8w_A 112 -----A--------------LRTDEAVALAKDAEAAGADALL-------LAPVSYTPLTQEEAYHHFAAVAGATALPLAI 165 (332)
T ss_dssp -----C--------------SSHHHHHHHHHHHHHHTCSEEE-------ECCCCSSCCCHHHHHHHHHHHHHHCSSCEEE
T ss_pred -----C--------------CCHHHHHHHHHHHHhcCCCEEE-------ECCCCCCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 1 2568888877776677999999 5443211 34445777888999999
Q ss_pred EEech
Q 013861 379 YQVSG 383 (435)
Q Consensus 379 YqVSG 383 (435)
|++-|
T Consensus 166 Yn~P~ 170 (332)
T 2r8w_A 166 YNNPT 170 (332)
T ss_dssp ECCHH
T ss_pred EeCcc
Confidence 99744
No 196
>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=57.85 E-value=41 Score=31.98 Aligned_cols=47 Identities=15% Similarity=0.219 Sum_probs=30.8
Q ss_pred HHHHHHHHhhCCCCeEEE---EechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEe
Q 013861 362 LDVIRLLRDKYPLPIAAY---QVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADII 418 (435)
Q Consensus 362 LDIIr~vk~~~~lPvaaY---qVSGEYaMikaAa~~G~ide~~~v~Esl~~ikRAGAd~I 418 (435)
.++++.+|+ ..+.|-+| -.+.||. |-.|.+ .+.|....+..+|||.|
T Consensus 127 ~~~v~~a~~-~G~~V~~~l~~~~~~e~~--------~~~~~~-~~~~~~~~~~~~G~d~i 176 (302)
T 2ftp_A 127 VPVLEAARQ-HQVRVRGYISCVLGCPYD--------GDVDPR-QVAWVARELQQMGCYEV 176 (302)
T ss_dssp HHHHHHHHH-TTCEEEEEEECTTCBTTT--------BCCCHH-HHHHHHHHHHHTTCSEE
T ss_pred HHHHHHHHH-CCCeEEEEEEEEeeCCcC--------CCCCHH-HHHHHHHHHHHcCCCEE
Confidence 444555554 45666443 3455763 456664 67899999999999986
No 197
>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=57.75 E-value=11 Score=36.06 Aligned_cols=109 Identities=22% Similarity=0.362 Sum_probs=71.9
Q ss_pred cCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCC--------CCchHHHHHHHHHHCCCCCceeechhhhhcccccccc
Q 013861 234 REDGVIMNDETVHQLCKQAVSQARAGADVVSPSDM--------MDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPF 305 (435)
Q Consensus 234 ~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDM--------MDGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPF 305 (435)
++||.||- +.++.|++ -+.++|+|-|.+.+. .+=|...++.+.+..+ .+++|+.-..
T Consensus 17 ~~dg~iD~-~~l~~lv~---~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~-grvpviaGvg---------- 81 (300)
T 3eb2_A 17 DAEGRVRA-DVMGRLCD---DLIQAGVHGLTPLGSTGEFAYLGTAQREAVVRATIEAAQ-RRVPVVAGVA---------- 81 (300)
T ss_dssp CTTSCBCH-HHHHHHHH---HHHHTTCSCBBTTSGGGTGGGCCHHHHHHHHHHHHHHHT-TSSCBEEEEE----------
T ss_pred CCCCCcCH-HHHHHHHH---HHHHcCCCEEEECccccCccccCHHHHHHHHHHHHHHhC-CCCcEEEeCC----------
Confidence 45677773 34444443 456799998876543 3457777777777754 4677775421
Q ss_pred hhhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCch-------HHHHHHHHhhCCCCeEE
Q 013861 306 REALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPY-------LDVIRLLRDKYPLPIAA 378 (435)
Q Consensus 306 RdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~Y-------LDIIr~vk~~~~lPvaa 378 (435)
+ .|.+|+++.++.=.+-|||.+| |=|-..| .+=.+.+.+.+++||..
T Consensus 82 -----~--------------~~t~~ai~la~~a~~~Gadavl-------v~~P~y~~~~~~~l~~~f~~va~a~~lPiil 135 (300)
T 3eb2_A 82 -----S--------------TSVADAVAQAKLYEKLGADGIL-------AILEAYFPLKDAQIESYFRAIADAVEIPVVI 135 (300)
T ss_dssp -----E--------------SSHHHHHHHHHHHHHHTCSEEE-------EEECCSSCCCHHHHHHHHHHHHHHCSSCEEE
T ss_pred -----C--------------CCHHHHHHHHHHHHHcCCCEEE-------EcCCCCCCCCHHHHHHHHHHHHHHCCCCEEE
Confidence 1 1468888877776678999999 5433221 34455677888999999
Q ss_pred EEech
Q 013861 379 YQVSG 383 (435)
Q Consensus 379 YqVSG 383 (435)
|++-|
T Consensus 136 Yn~P~ 140 (300)
T 3eb2_A 136 YTNPQ 140 (300)
T ss_dssp EECTT
T ss_pred EECcc
Confidence 99744
No 198
>2qiw_A PEP phosphonomutase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: P6G; 1.80A {Corynebacterium glutamicum atcc 13032}
Probab=57.58 E-value=15 Score=34.89 Aligned_cols=103 Identities=17% Similarity=0.135 Sum_probs=64.3
Q ss_pred HHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHH----CCCeEEEeeecccCCCCCCcceeecC
Q 013861 160 VQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDR----YPDLVIYTDVALDPYSSDGHDGIVRE 235 (435)
Q Consensus 160 ~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~----~Pdl~IitDVcLc~YTshGHcGIv~e 235 (435)
.+.+.++.+.|+..|-|=+-+. ..|.+-.+. .-...-|+.+++. -+++.|++=+-. + +.
T Consensus 96 ~~~~~~l~~aGa~gv~iEd~~~-----~~~k~l~~~-~e~~~~I~a~~~a~~~~g~~~~v~aRtd~--~--------~~- 158 (255)
T 2qiw_A 96 ADLIAQILEAGAVGINVEDVVH-----SEGKRVREA-QEHADYIAAARQAADVAGVDVVINGRTDA--V--------KL- 158 (255)
T ss_dssp HHHHHHHHHTTCCEEEECSEEG-----GGTTEECCH-HHHHHHHHHHHHHHHHHTCCCEEEEEECH--H--------HH-
T ss_pred HHHHHHHHHcCCcEEEECCCCC-----CCCCcccCH-HHHHHHHHHHHHHHHhcCCCeEEEEEech--h--------hc-
Confidence 6778888899999998833210 001111111 1245678888877 566666543222 0 11
Q ss_pred CCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC-chHHHHHHHH
Q 013861 236 DGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMD-GRVGAIRAAL 280 (435)
Q Consensus 236 ~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMMD-GrVgAIR~aL 280 (435)
|.-++.+.++.+.+-|..+++||||+|-+-.+-+ -.+..|.++|
T Consensus 159 -g~~~~~~~~~~ai~ra~a~~eAGAd~i~~e~~~~~~~~~~i~~~~ 203 (255)
T 2qiw_A 159 -GADVFEDPMVEAIKRIKLMEQAGARSVYPVGLSTAEQVERLVDAV 203 (255)
T ss_dssp -CTTTSSSHHHHHHHHHHHHHHHTCSEEEECCCCSHHHHHHHHTTC
T ss_pred -cCCcchHHHHHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHhC
Confidence 2223346788999999999999999998877765 5566666655
No 199
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=57.30 E-value=14 Score=35.81 Aligned_cols=115 Identities=21% Similarity=0.330 Sum_probs=71.6
Q ss_pred cCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCC--------CCchHHHHHHHHHHCCCCCceeechhhhhcccccccc
Q 013861 234 REDGVIMNDETVHQLCKQAVSQARAGADVVSPSDM--------MDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPF 305 (435)
Q Consensus 234 ~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDM--------MDGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPF 305 (435)
++||.|| -+.++.+++ -+.++|+|-+.+.+. .+=|...++.+.+..+ .+++|+.-..
T Consensus 36 ~~dg~iD-~~~l~~lv~---~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~-grvpViaGvg---------- 100 (314)
T 3qze_A 36 DAQGRLD-WDSLAKLVD---FHLQEGTNAIVAVGTTGESATLDVEEHIQVIRRVVDQVK-GRIPVIAGTG---------- 100 (314)
T ss_dssp CTTSCBC-HHHHHHHHH---HHHHHTCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHHT-TSSCEEEECC----------
T ss_pred CCCCCcC-HHHHHHHHH---HHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhC-CCCcEEEeCC----------
Confidence 3467777 344444444 356789997766442 3456677777777765 3677776422
Q ss_pred hhhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCC-chHHHHHHHHhhCCCCeEEEEech
Q 013861 306 REALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGL-PYLDVIRLLRDKYPLPIAAYQVSG 383 (435)
Q Consensus 306 RdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal-~YLDIIr~vk~~~~lPvaaYqVSG 383 (435)
+ .|.+|+++.++.=.+-|||.+|. +--...||.. -..+=.+.+.+.+++||.-|++-|
T Consensus 101 -----~--------------~st~eai~la~~A~~~Gadavlv-~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P~ 159 (314)
T 3qze_A 101 -----A--------------NSTREAVALTEAAKSGGADACLL-VTPYYNKPTQEGMYQHFRHIAEAVAIPQILYNVPG 159 (314)
T ss_dssp -----C--------------SSHHHHHHHHHHHHHTTCSEEEE-ECCCSSCCCHHHHHHHHHHHHHHSCSCEEEEECHH
T ss_pred -----C--------------cCHHHHHHHHHHHHHcCCCEEEE-cCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence 1 14688888777766789999991 1111123321 013445577788899999999854
No 200
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=57.26 E-value=69 Score=25.42 Aligned_cols=63 Identities=10% Similarity=0.095 Sum_probs=46.1
Q ss_pred CCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhC-CCCeEEEEechHHHHHHHHHHCC
Q 013861 326 ANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALK 395 (435)
Q Consensus 326 ~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~-~lPvaaYqVSGEYaMikaAa~~G 395 (435)
.|..||+..... ..-|+|++.. --|.+.-+++++.+|+.. .+|+...--..+...+..+.+.|
T Consensus 45 ~~~~~a~~~l~~---~~~dlvi~D~----~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g 108 (153)
T 3hv2_A 45 RDATQALQLLAS---REVDLVISAA----HLPQMDGPTLLARIHQQYPSTTRILLTGDPDLKLIAKAINEG 108 (153)
T ss_dssp SSHHHHHHHHHH---SCCSEEEEES----CCSSSCHHHHHHHHHHHCTTSEEEEECCCCCHHHHHHHHHTT
T ss_pred CCHHHHHHHHHc---CCCCEEEEeC----CCCcCcHHHHHHHHHhHCCCCeEEEEECCCCHHHHHHHHhCC
Confidence 367777776643 4589998221 126777899999999976 59998887777777777777777
No 201
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A
Probab=57.25 E-value=12 Score=35.83 Aligned_cols=107 Identities=18% Similarity=0.240 Sum_probs=70.5
Q ss_pred CCccccHHHHHHHHHHHHHHHHcCCCeecCCCC------C--CchHHHHHHHHHHCCCCCceeechhhhhcccccccchh
Q 013861 236 DGVIMNDETVHQLCKQAVSQARAGADVVSPSDM------M--DGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFRE 307 (435)
Q Consensus 236 ~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDM------M--DGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRd 307 (435)
||.|| -+.++.|+ --+.++|+|-|.+.+. | +=|...++.+.+..+ .+++|+.=..
T Consensus 27 dg~iD-~~~l~~lv---~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~vi~~~~~~~~-grvpViaGvg------------ 89 (306)
T 1o5k_A 27 NGELD-LESYERLV---RYQLENGVNALIVLGTTGESPTVNEDEREKLVSRTLEIVD-GKIPVIVGAG------------ 89 (306)
T ss_dssp TTEEC-HHHHHHHH---HHHHHTTCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHHT-TSSCEEEECC------------
T ss_pred CCCcC-HHHHHHHH---HHHHHcCCCEEEeCccccchhhCCHHHHHHHHHHHHHHhC-CCCeEEEcCC------------
Confidence 67886 33444444 4456789998876542 2 347777888887754 3677775422
Q ss_pred hhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCch-------HHHHHHHHhhCCCCeEEEE
Q 013861 308 ALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPY-------LDVIRLLRDKYPLPIAAYQ 380 (435)
Q Consensus 308 A~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~Y-------LDIIr~vk~~~~lPvaaYq 380 (435)
+ .|.+|+++.++.=.+-|||.+| |=|-..| .+=.+.+.+.+++||..|+
T Consensus 90 ---~--------------~st~~ai~la~~A~~~Gadavl-------v~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn 145 (306)
T 1o5k_A 90 ---T--------------NSTEKTLKLVKQAEKLGANGVL-------VVTPYYNKPTQEGLYQHYKYISERTDLGIVVYN 145 (306)
T ss_dssp ---C--------------SCHHHHHHHHHHHHHHTCSEEE-------EECCCSSCCCHHHHHHHHHHHHTTCSSCEEEEE
T ss_pred ---C--------------ccHHHHHHHHHHHHhcCCCEEE-------ECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEe
Confidence 1 1568888877776677999999 5432211 3444577788899999999
Q ss_pred ech
Q 013861 381 VSG 383 (435)
Q Consensus 381 VSG 383 (435)
+-|
T Consensus 146 ~P~ 148 (306)
T 1o5k_A 146 VPG 148 (306)
T ss_dssp CHH
T ss_pred Ccc
Confidence 754
No 202
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}
Probab=57.23 E-value=16 Score=36.12 Aligned_cols=58 Identities=21% Similarity=0.316 Sum_probs=38.9
Q ss_pred ccccccEEecc-cCCCcccCCCchHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccE
Q 013861 339 ESEGADILLFS-VLGSQVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADI 417 (435)
Q Consensus 339 ~~EGADilM~~-~~~~~VKPal~YLDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G~ide~~~v~Esl~~ikRAGAd~ 417 (435)
++.|+|+|.+. ..| .| ..++|.|+.+|+.+++||.+-+|. + .|....+.++|||+
T Consensus 114 ~eaGad~I~ld~a~G---~~-~~~~~~i~~i~~~~~~~Vivg~v~---------------t-----~e~A~~l~~aGaD~ 169 (361)
T 3khj_A 114 VEAGVDVIVLDSAHG---HS-LNIIRTLKEIKSKMNIDVIVGNVV---------------T-----EEATKELIENGADG 169 (361)
T ss_dssp HHTTCSEEEECCSCC---SB-HHHHHHHHHHHHHCCCEEEEEEEC---------------S-----HHHHHHHHHTTCSE
T ss_pred HHcCcCeEEEeCCCC---Cc-HHHHHHHHHHHHhcCCcEEEccCC---------------C-----HHHHHHHHHcCcCE
Confidence 36799999821 111 12 246899999999999999985552 1 22334566789988
Q ss_pred eeh
Q 013861 418 ILT 420 (435)
Q Consensus 418 IiT 420 (435)
|+.
T Consensus 170 I~V 172 (361)
T 3khj_A 170 IKV 172 (361)
T ss_dssp EEE
T ss_pred EEE
Confidence 864
No 203
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=57.02 E-value=27 Score=33.05 Aligned_cols=94 Identities=23% Similarity=0.268 Sum_probs=60.0
Q ss_pred cCCCCCCHHHHHHHHHhcccccccEEecccC-CCcccCCCch-HHHHHHHHhhC-CCCeEE-EEec--hHHHHHHHHHHC
Q 013861 321 YQMNPANYREALVEAQADESEGADILLFSVL-GSQVKPGLPY-LDVIRLLRDKY-PLPIAA-YQVS--GEYSMIKAGGAL 394 (435)
Q Consensus 321 YQmdp~N~~EAlre~~~D~~EGADilM~~~~-~~~VKPal~Y-LDIIr~vk~~~-~lPvaa-YqVS--GEYaMikaAa~~ 394 (435)
.-.|+.|..|+++.+.. -|||.+=+-|. |..| |-+.| .++|+.+|+.+ ++|+-+ -.|. +.| ++.++++
T Consensus 35 lsaD~~~L~~~i~~l~~---~G~d~lHvDVmDg~FV-pnit~G~~~v~~lr~~~p~~~ldvHLmv~~p~~~--i~~~~~a 108 (246)
T 3inp_A 35 LSADLARLGDDVKAVLA---AGADNIHFDVMDNHYV-PNLTFGPMVLKALRDYGITAGMDVHLMVKPVDAL--IESFAKA 108 (246)
T ss_dssp GGSCGGGHHHHHHHHHH---TTCCCEEEEEEBSSSS-SCBCCCHHHHHHHHHHTCCSCEEEEEECSSCHHH--HHHHHHH
T ss_pred hcCChhhHHHHHHHHHH---cCCCEEEEEecCCCcC-cchhcCHHHHHHHHHhCCCCeEEEEEeeCCHHHH--HHHHHHc
Confidence 44678899998888864 68998764433 3333 44444 79999999999 899877 3333 334 4555555
Q ss_pred CC--Cc---h-hhHHHHHHHHHHHhcccEeeh
Q 013861 395 KM--ID---E-QRVMMESLMCLRRAGADIILT 420 (435)
Q Consensus 395 G~--id---e-~~~v~Esl~~ikRAGAd~IiT 420 (435)
|. +- | ..-+.+.+..+|++|....++
T Consensus 109 GAd~itvH~Ea~~~~~~~i~~ir~~G~k~Gva 140 (246)
T 3inp_A 109 GATSIVFHPEASEHIDRSLQLIKSFGIQAGLA 140 (246)
T ss_dssp TCSEEEECGGGCSCHHHHHHHHHTTTSEEEEE
T ss_pred CCCEEEEccccchhHHHHHHHHHHcCCeEEEE
Confidence 52 10 1 123566777777777766554
No 204
>4gie_A Prostaglandin F synthase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: NAP; 1.25A {Trypanosoma cruzi} PDB: 4fzi_A*
Probab=56.81 E-value=19 Score=33.90 Aligned_cols=186 Identities=16% Similarity=0.105 Sum_probs=105.0
Q ss_pred CceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCC
Q 013861 149 GCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDG 228 (435)
Q Consensus 149 Gv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTshG 228 (435)
|.++.+-++...+.|+.+++.||+.+=. =+-.|+ +-.+-++++.-...-.++.|.+-+.- ..+|
T Consensus 30 Gtw~~~d~~e~~~~v~~Al~~Gin~~DT--------A~~Ygs-----E~~vG~~l~~~~~~r~~~~i~tk~~~---~~~~ 93 (290)
T 4gie_A 30 GVWRAQDGAETANAVRWAIEAGYRHIDT--------AYIYSN-----ERGVGQGIRESGVPREEVWVTTKVWN---SDQG 93 (290)
T ss_dssp ECTTCCTTHHHHHHHHHHHHHTCCEEEC--------CGGGTC-----HHHHHHHHHHHCCCGGGSEEEEEECG---GGCS
T ss_pred ECCCCCCHHHHHHHHHHHHHcCCCEEec--------ccccCC-----HHHHHHHHHhcCCcchhccccccccc---cCCC
Confidence 5566654446888999999999997422 122343 23344554432111235777766532 1222
Q ss_pred cceeecCCCccccHHHHHHHHHHHHHHHHcCCCee------cCCCCC-CchHHHHHHHHHHCCC-CCceeechhhhhccc
Q 013861 229 HDGIVREDGVIMNDETVHQLCKQAVSQARAGADVV------SPSDMM-DGRVGAIRAALDAEGF-QHVSIMSYTAKYASS 300 (435)
Q Consensus 229 HcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiV------APSDMM-DGrVgAIR~aLD~~Gf-~~v~IMSYSaKyASa 300 (435)
+..+.. .-|+ |+.+-|-|-| .|...- .....++. .|.++|. ..+++=-|++.-
T Consensus 94 ~~~~~~-----~~e~----------SL~rL~~dyiDly~lH~p~~~~~~e~~~al~-~l~~~Gkir~iGvSn~~~~~--- 154 (290)
T 4gie_A 94 YEKTLA-----AFER----------SRELLGLEYIDLYLIHWPGKKKFVDTWKALE-KLYEEKKVRAIGVSNFEPHH--- 154 (290)
T ss_dssp HHHHHH-----HHHH----------HHHHHTCSCEEEEEECCCCSSSHHHHHHHHH-HHHHTTSEEEEEEESCCHHH---
T ss_pred hHHHHH-----HHHH----------HHHHhCCCceeeEEecCCCCCcchHHHHHHH-HHHHCCCcceeeecCCCHHH---
Confidence 222221 1123 3445576644 343221 12344443 3556786 556664444321
Q ss_pred ccccchhhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhCCCC
Q 013861 301 FYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLP 375 (435)
Q Consensus 301 fYGPFRdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~~lP 375 (435)
++++...+.....--.|++.|.+.+..+.+... +.|--++-+|.||+-...+....+.++++.++++..
T Consensus 155 ----l~~~~~~~~~~~~~~q~~~~~~~~~~~l~~~~~--~~gi~~~a~spl~~G~l~~~~~~~~l~~iA~~~g~t 223 (290)
T 4gie_A 155 ----LTELFKSCKIRPMVNQVELHPLFQQRTLREFCK--QHNIAITAWSPLGSGEEAGILKNHVLGEIAKKHNKS 223 (290)
T ss_dssp ----HHHHHTTCSSCCSEEEEECBTTBCCHHHHHHHH--HTTCEEEEESTTCSSGGGCGGGCHHHHHHHHHHTCC
T ss_pred ----HHHHHHhccCCCceeeEeccccchhHHHHHHHH--HcCceEeeecccccccccccchhHHHHHHHHHhCCC
Confidence 234444433323344678888887777877766 678888999999987777777778888888776543
No 205
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=56.51 E-value=44 Score=26.13 Aligned_cols=69 Identities=23% Similarity=0.253 Sum_probs=46.8
Q ss_pred CCHHHHHHHHHhccc--ccccEEecccCCCcccCCCchHHHHHHHHhh--CCCCeEEEEechHHHHHHHHHHCCCCc
Q 013861 326 ANYREALVEAQADES--EGADILLFSVLGSQVKPGLPYLDVIRLLRDK--YPLPIAAYQVSGEYSMIKAGGALKMID 398 (435)
Q Consensus 326 ~N~~EAlre~~~D~~--EGADilM~~~~~~~VKPal~YLDIIr~vk~~--~~lPvaaYqVSGEYaMikaAa~~G~id 398 (435)
.|..||+.....-.. +--|+|+... -=|++.=+++++.+|+. ...||...--+++......|.+.|..+
T Consensus 34 ~~~~~al~~~~~~~~~~~~~dlvllD~----~mp~~~G~~~~~~lr~~~~~~~~ii~lt~~~~~~~~~~~~~~ga~~ 106 (133)
T 2r25_B 34 CDGQEAFDKVKELTSKGENYNMIFMDV----QMPKVDGLLSTKMIRRDLGYTSPIVALTAFADDSNIKECLESGMNG 106 (133)
T ss_dssp SSHHHHHHHHHHHHHHTCCCSEEEECS----CCSSSCHHHHHHHHHHHSCCCSCEEEEESCCSHHHHHHHHHTTCSE
T ss_pred CCHHHHHHHHHHHHhcCCCCCEEEEeC----CCCCCChHHHHHHHHhhcCCCCCEEEEECCCCHHHHHHHHHcCCCE
Confidence 467777766553111 3468887111 12777779999999974 368999887777777777777777654
No 206
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=56.46 E-value=42 Score=26.04 Aligned_cols=67 Identities=12% Similarity=0.166 Sum_probs=47.0
Q ss_pred CCCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhC-CCCeEEEEechHHHHHHHHHHCCCCc
Q 013861 325 PANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMID 398 (435)
Q Consensus 325 p~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~-~lPvaaYqVSGEYaMikaAa~~G~id 398 (435)
..|..||+..... +..|+++... .-|++.=+++++.+|+.. .+|+...--..+...+..+.+.|..+
T Consensus 35 ~~~~~~al~~~~~---~~~dlvilD~----~lp~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~ga~~ 102 (133)
T 3b2n_A 35 TDNGLDAMKLIEE---YNPNVVILDI----EMPGMTGLEVLAEIRKKHLNIKVIIVTTFKRPGYFEKAVVNDVDA 102 (133)
T ss_dssp ESCHHHHHHHHHH---HCCSEEEECS----SCSSSCHHHHHHHHHHTTCSCEEEEEESCCCHHHHHHHHHTTCSE
T ss_pred cCCHHHHHHHHhh---cCCCEEEEec----CCCCCCHHHHHHHHHHHCCCCcEEEEecCCCHHHHHHHHHcCCcE
Confidence 3467788776643 3579998211 126677799999999866 59999887766666677777777654
No 207
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=56.06 E-value=17 Score=32.92 Aligned_cols=48 Identities=27% Similarity=0.371 Sum_probs=30.8
Q ss_pred HHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhCCCCeEE
Q 013861 328 YREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAA 378 (435)
Q Consensus 328 ~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~~lPvaa 378 (435)
..|.+++.+ +.|||.|.++-+...-.-....++.|+++++.+++|+.+
T Consensus 32 ~~~~a~~~~---~~Ga~~i~v~d~~~~~~~~g~~~~~i~~i~~~~~iPvi~ 79 (266)
T 2w6r_A 32 LRDWVVEVE---KRGAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIA 79 (266)
T ss_dssp HHHHHHHHH---HHTCSEEEEEETTTSSCSSCCCHHHHHHHGGGCCSCEEE
T ss_pred HHHHHHHHH---HCCCCEEEEEecCcccCCCcccHHHHHHHHHhcCCCEEE
Confidence 344444443 479999986443211011124689999999999999976
No 208
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=55.94 E-value=28 Score=27.06 Aligned_cols=67 Identities=13% Similarity=0.121 Sum_probs=42.9
Q ss_pred CHHHHHHHHHhcc---cccccEEecccCCCcccCCCchHHHHHHHHhh---CCCCeEEEEechHHHHHHHHHHCCCC
Q 013861 327 NYREALVEAQADE---SEGADILLFSVLGSQVKPGLPYLDVIRLLRDK---YPLPIAAYQVSGEYSMIKAGGALKMI 397 (435)
Q Consensus 327 N~~EAlre~~~D~---~EGADilM~~~~~~~VKPal~YLDIIr~vk~~---~~lPvaaYqVSGEYaMikaAa~~G~i 397 (435)
+..||+....... .+..|+|++.. --|.+.-+++++.+++. ..+|+..+--+.+......+.+.|..
T Consensus 41 ~~~~a~~~l~~~~~~~~~~~dlii~D~----~l~~~~g~~~~~~l~~~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~ 113 (143)
T 2qvg_A 41 SGNQALDMLYGRNKENKIHPKLILLDI----NIPKMNGIEFLKELRDDSSFTDIEVFVLTAAYTSKDKLAFESLNIR 113 (143)
T ss_dssp SHHHHHHHHHTCTTCCCCCCSEEEEET----TCTTSCHHHHHHHHTTSGGGTTCEEEEEESCCCHHHHHHHTTTTCC
T ss_pred CHHHHHHHHHhcccccCCCCCEEEEec----CCCCCCHHHHHHHHHcCccccCCcEEEEeCCCCHHHHHHHHhcCCC
Confidence 5677776655322 14579998211 12667789999999987 46899888665555555555555543
No 209
>1rqb_A Transcarboxylase 5S subunit; TIM-barrel, carbamylated lysine, transfera; HET: KCX; 1.90A {Propionibacterium freudenreichii subspshermanii} SCOP: a.5.7.2 c.1.10.5 PDB: 1rqe_A 1rqh_A* 1rr2_A* 1u5j_A* 1s3h_A*
Probab=55.90 E-value=35 Score=35.95 Aligned_cols=126 Identities=16% Similarity=0.086 Sum_probs=76.5
Q ss_pred CCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCC
Q 013861 147 MPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSS 226 (435)
Q Consensus 147 MPGv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTs 226 (435)
+.|.-.|.-+ -..+.++.+.+.|+..|-+|....+. --+..+|+.+|+..-. +-+ ++|.-.+
T Consensus 108 ~~G~~~ypdd-v~~~~ve~a~~aGvd~vrIf~s~sd~-------------~ni~~~i~~ak~~G~~--v~~--~i~~~~~ 169 (539)
T 1rqb_A 108 LLGYRHYNDE-VVDRFVDKSAENGMDVFRVFDAMNDP-------------RNMAHAMAAVKKAGKH--AQG--TICYTIS 169 (539)
T ss_dssp TTSSSCCCHH-HHHHHHHHHHHTTCCEEEECCTTCCT-------------HHHHHHHHHHHHTTCE--EEE--EEECCCS
T ss_pred ccCcccCccc-ccHHHHHHHHhCCCCEEEEEEehhHH-------------HHHHHHHHHHHHCCCe--EEE--EEEeeeC
Confidence 4455455432 35778999999999999999764431 1257889999887533 222 2221111
Q ss_pred CCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCc--------hHHHHHHHHH--H-CCC--CCceeech
Q 013861 227 DGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDG--------RVGAIRAALD--A-EGF--QHVSIMSY 293 (435)
Q Consensus 227 hGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMMDG--------rVgAIR~aLD--~-~Gf--~~v~IMSY 293 (435)
.. - +++.+.+.+-...++|||+|+-.||.=+ .|.++|+.+. - -|+ +|+.=|+.
T Consensus 170 ~~-----------~---~~e~~~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~i~I~~H~Hnd~GlAv 235 (539)
T 1rqb_A 170 PV-----------H---TVEGYVKLAGQLLDMGADSIALKDMAALLKPQPAYDIIKAIKDTYGQKTQINLHCHSTTGVTE 235 (539)
T ss_dssp TT-----------C---CHHHHHHHHHHHHHTTCSEEEEEETTCCCCHHHHHHHHHHHHHHHCTTCCEEEEEBCTTSCHH
T ss_pred CC-----------C---CHHHHHHHHHHHHHcCCCEEEeCCCCCCcCHHHHHHHHHHHHHhcCCCceEEEEeCCCCChHH
Confidence 11 1 4566667777778899999999998652 4677777762 1 121 44444555
Q ss_pred hhhhccccccc
Q 013861 294 TAKYASSFYGP 304 (435)
Q Consensus 294 SaKyASafYGP 304 (435)
+.=.+..-.|-
T Consensus 236 AN~laAveAGa 246 (539)
T 1rqb_A 236 VSLMKAIEAGV 246 (539)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHhCC
Confidence 54444444443
No 210
>3fa4_A 2,3-dimethylmalate lyase; alpha/beta barrel, helix swapping; 2.18A {Aspergillus niger} PDB: 3fa3_A
Probab=55.84 E-value=60 Score=31.84 Aligned_cols=102 Identities=17% Similarity=0.108 Sum_probs=56.7
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHH---HHHHHHH----CCCeEEEeeecccCCCCCCcc
Q 013861 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRT---IWLLKDR----YPDLVIYTDVALDPYSSDGHD 230 (435)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~ra---Ir~iK~~----~Pdl~IitDVcLc~YTshGHc 230 (435)
.+.+.++++.+.|+..|.|=+.+.+ +| +|...-.+==.+... |++.++. -||++|++=+-- |..
T Consensus 96 ~v~~tv~~l~~aGaagv~iEDq~~~-Kr--cgh~~gk~l~~~~e~~~rI~Aa~~A~~~~~~d~~I~ARTDa--~~~---- 166 (302)
T 3fa4_A 96 MVARTTEQYSRSGVAAFHIEDQVQT-KR--CGHLAGKILVDTDTYVTRIRAAVQARQRIGSDIVVIARTDS--LQT---- 166 (302)
T ss_dssp HHHHHHHHHHHTTCCEEEECSBCCC----------CCCBCCHHHHHHHHHHHHHHHHHHTCCCEEEEEECC--HHH----
T ss_pred HHHHHHHHHHHcCCcEEEECCCCCC-cc--cCCCCCCeecCHHHHHHHHHHHHHHHHhcCCCEEEEEEecc--ccc----
Confidence 4788899999999999998655432 12 221111111122233 3444332 589998864321 110
Q ss_pred eeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCc-hHHHHHHHH
Q 013861 231 GIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDG-RVGAIRAAL 280 (435)
Q Consensus 231 GIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMMDG-rVgAIR~aL 280 (435)
.| -|+++++ +-.|++||||+|-+-.+-|- .+.+|.+++
T Consensus 167 -----~g---ldeAi~R----a~ay~eAGAD~ifi~g~~~~~ei~~~~~~~ 205 (302)
T 3fa4_A 167 -----HG---YEESVAR----LRAARDAGADVGFLEGITSREMARQVIQDL 205 (302)
T ss_dssp -----HC---HHHHHHH----HHHHHTTTCSEEEETTCCCHHHHHHHHHHT
T ss_pred -----CC---HHHHHHH----HHHHHHcCCCEEeecCCCCHHHHHHHHHHh
Confidence 01 3555554 67899999999988777552 344444444
No 211
>1rqb_A Transcarboxylase 5S subunit; TIM-barrel, carbamylated lysine, transfera; HET: KCX; 1.90A {Propionibacterium freudenreichii subspshermanii} SCOP: a.5.7.2 c.1.10.5 PDB: 1rqe_A 1rqh_A* 1rr2_A* 1u5j_A* 1s3h_A*
Probab=55.78 E-value=2e+02 Score=30.21 Aligned_cols=179 Identities=20% Similarity=0.229 Sum_probs=93.5
Q ss_pred CceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeee---cccCCC
Q 013861 149 GCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDV---ALDPYS 225 (435)
Q Consensus 149 Gv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDV---cLc~YT 225 (435)
|..+++.+ ..++.++.+.++|+.++=.-+ |.. -|.. --..+++ -...++.|++..|+..+.+=+ .+.-|+
T Consensus 40 ~~~~~~te-dKl~Ia~~L~~~Gv~~IE~G~--pat-F~~~-~rfl~~d--~~e~lr~l~~~~~~~~l~~L~R~~N~~G~~ 112 (539)
T 1rqb_A 40 MATRMAME-DMVGACADIDAAGYWSVECWG--GAT-YDSC-IRFLNED--PWERLRTFRKLMPNSRLQMLLRGQNLLGYR 112 (539)
T ss_dssp STTCCCGG-GTGGGHHHHHHTTCSEEEEEE--TTH-HHHH-HHTSCCC--HHHHHHHHHHHCTTSCEEEEECGGGTTSSS
T ss_pred CCCCCCHH-HHHHHHHHHHHcCCCEEEeCc--ccc-cccc-hhccCCC--HHHHHHHHHHhCCCCEEEEEeccccccCcc
Confidence 34455664 478889999999999998732 110 0000 0000111 135688888888875544322 233342
Q ss_pred CCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeec----CCCCCCchHHHHHHHHHHCCCCCceeechhhhhcccc
Q 013861 226 SDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVS----PSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSF 301 (435)
Q Consensus 226 shGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVA----PSDMMDGrVgAIR~aLD~~Gf~~v~IMSYSaKyASaf 301 (435)
. . . ..+ ++.+++.+ +++|+|+|. -||. + .+...-+.+.+.|..-...+||.
T Consensus 113 ~------y-p-ddv-~~~~ve~a-------~~aGvd~vrIf~s~sd~-~-ni~~~i~~ak~~G~~v~~~i~~~------- 167 (539)
T 1rqb_A 113 H------Y-N-DEV-VDRFVDKS-------AENGMDVFRVFDAMNDP-R-NMAHAMAAVKKAGKHAQGTICYT------- 167 (539)
T ss_dssp C------C-C-HHH-HHHHHHHH-------HHTTCCEEEECCTTCCT-H-HHHHHHHHHHHTTCEEEEEEECC-------
T ss_pred c------C-c-ccc-cHHHHHHH-------HhCCCCEEEEEEehhHH-H-HHHHHHHHHHHCCCeEEEEEEee-------
Confidence 1 0 1 011 45556554 367999876 4444 2 23333334456776322234553
Q ss_pred cccchhhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhC--CCCeEEE
Q 013861 302 YGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKY--PLPIAAY 379 (435)
Q Consensus 302 YGPFRdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~--~lPvaaY 379 (435)
++ + +.+.+..+.-+..=++-|||+|-+.---..-.|. .+-++|+.+|+++ ++|+. +
T Consensus 168 ~~---------~-----------~~~~e~~~~~a~~l~~~Gad~I~L~DT~G~~~P~-~v~~lv~~l~~~~p~~i~I~-~ 225 (539)
T 1rqb_A 168 IS---------P-----------VHTVEGYVKLAGQLLDMGADSIALKDMAALLKPQ-PAYDIIKAIKDTYGQKTQIN-L 225 (539)
T ss_dssp CS---------T-----------TCCHHHHHHHHHHHHHTTCSEEEEEETTCCCCHH-HHHHHHHHHHHHHCTTCCEE-E
T ss_pred eC---------C-----------CCCHHHHHHHHHHHHHcCCCEEEeCCCCCCcCHH-HHHHHHHHHHHhcCCCceEE-E
Confidence 11 0 1144444443333345699999732111113455 4579999999998 68874 4
Q ss_pred Ee
Q 013861 380 QV 381 (435)
Q Consensus 380 qV 381 (435)
|-
T Consensus 226 H~ 227 (539)
T 1rqb_A 226 HC 227 (539)
T ss_dssp EE
T ss_pred Ee
Confidence 54
No 212
>4dpp_A DHDPS 2, dihydrodipicolinate synthase 2, chloroplastic; amino-acid biosynthesis, (S)-lysine biosynthesis VIA DAP PAT (beta/alpha)8-barrel; 2.00A {Arabidopsis thaliana} PDB: 4dpq_A* 3tuu_A*
Probab=55.74 E-value=52 Score=32.94 Aligned_cols=109 Identities=21% Similarity=0.202 Sum_probs=65.6
Q ss_pred cCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCC--------CCchHHHHHHHHHHCCCCCceeechhhhhcccccccc
Q 013861 234 REDGVIMNDETVHQLCKQAVSQARAGADVVSPSDM--------MDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPF 305 (435)
Q Consensus 234 ~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDM--------MDGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPF 305 (435)
++||.|| -+.++.|++ -+.++|+|-|.+.+. .+=|...++.+.+..+ .+++|+.-..
T Consensus 72 ~~dg~ID-~~al~~lv~---~li~~Gv~Gl~v~GTTGE~~~Ls~eEr~~vi~~~ve~~~-grvpViaGvg---------- 136 (360)
T 4dpp_A 72 LPDGRFD-LEAYDDLVN---IQIQNGAEGVIVGGTTGEGQLMSWDEHIMLIGHTVNCFG-GSIKVIGNTG---------- 136 (360)
T ss_dssp CTTSSBC-HHHHHHHHH---HHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHT-TTSEEEEECC----------
T ss_pred CCCCCcC-HHHHHHHHH---HHHHcCCCEEEecccccChhhCCHHHHHHHHHHHHHHhC-CCCeEEEecC----------
Confidence 3567776 445555554 456899998877552 3456777777777765 4777775321
Q ss_pred hhhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCch----HHHHHHHHhhC-CCCeEEEE
Q 013861 306 REALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPY----LDVIRLLRDKY-PLPIAAYQ 380 (435)
Q Consensus 306 RdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~Y----LDIIr~vk~~~-~lPvaaYq 380 (435)
+ .|.+|++..++.=.+-|||.+| |=|-..| =.+++-.++-. .+||..|+
T Consensus 137 -----~--------------~st~eai~la~~A~~~Gadavl-------vv~PyY~k~sq~gl~~hf~~IA~a~PiilYN 190 (360)
T 4dpp_A 137 -----S--------------NSTREAIHATEQGFAVGMHAAL-------HINPYYGKTSIEGLIAHFQSVLHMGPTIIYN 190 (360)
T ss_dssp -----C--------------SSHHHHHHHHHHHHHTTCSEEE-------EECCCSSCCCHHHHHHHHHTTGGGSCEEEEE
T ss_pred -----C--------------CCHHHHHHHHHHHHHcCCCEEE-------EcCCCCCCCCHHHHHHHHHHHHHhCCEEEEe
Confidence 1 1467788777766667999888 4332111 23333333211 26888888
Q ss_pred ech
Q 013861 381 VSG 383 (435)
Q Consensus 381 VSG 383 (435)
+-|
T Consensus 191 iP~ 193 (360)
T 4dpp_A 191 VPG 193 (360)
T ss_dssp CHH
T ss_pred CCc
Confidence 744
No 213
>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5
Probab=55.68 E-value=1.1e+02 Score=26.90 Aligned_cols=49 Identities=12% Similarity=0.215 Sum_probs=34.6
Q ss_pred HHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeee
Q 013861 160 VQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDV 219 (435)
Q Consensus 160 ~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDV 219 (435)
.+.++.+.+.|...|.+-.. ..+ +++..+.+.++.+|+.+|++.++.++
T Consensus 78 ~~~i~~~~~~Gad~v~l~~~---~~~--------~p~~~~~~~i~~~~~~~~~~~v~~~~ 126 (223)
T 1y0e_A 78 SKEVDELIESQCEVIALDAT---LQQ--------RPKETLDELVSYIRTHAPNVEIMADI 126 (223)
T ss_dssp HHHHHHHHHHTCSEEEEECS---CSC--------CSSSCHHHHHHHHHHHCTTSEEEEEC
T ss_pred HHHHHHHHhCCCCEEEEeee---ccc--------CcccCHHHHHHHHHHhCCCceEEecC
Confidence 46788889999988776332 111 23234678999999999998887653
No 214
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=55.64 E-value=12 Score=35.56 Aligned_cols=109 Identities=17% Similarity=0.206 Sum_probs=71.1
Q ss_pred cCCCccccHHHHHHHHHHHHHHHH-cCCCeecCCCC--------CCchHHHHHHHHHHCCCCCceeechhhhhccccccc
Q 013861 234 REDGVIMNDETVHQLCKQAVSQAR-AGADVVSPSDM--------MDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGP 304 (435)
Q Consensus 234 ~e~g~IdND~Tv~~Lak~Avs~A~-AGADiVAPSDM--------MDGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGP 304 (435)
++||.|| -+.++.|++ -+.+ +|+|-|.+.+. .+=|...+|.+.+..+ .+++|+.-..
T Consensus 16 ~~dg~iD-~~~l~~lv~---~li~~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~-grvpviaGvg--------- 81 (293)
T 1f6k_A 16 NEDGTIN-EKGLRQIIR---HNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAK-DQIALIAQVG--------- 81 (293)
T ss_dssp CTTSCBC-HHHHHHHHH---HHHHTSCCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHT-TSSEEEEECC---------
T ss_pred CCCCCcC-HHHHHHHHH---HHHhhCCCcEEEeCccccchhhCCHHHHHHHHHHHHHHhC-CCCeEEEecC---------
Confidence 3568887 334444444 4566 89998876542 2347777888887665 3788875432
Q ss_pred chhhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCch-------HHHHHHHHhhCCCCeE
Q 013861 305 FREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPY-------LDVIRLLRDKYPLPIA 377 (435)
Q Consensus 305 FRdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~Y-------LDIIr~vk~~~~lPva 377 (435)
+ .|.+|+++.++.=.+-|||.+| |=|-..| .+=.+.+.+.+++||.
T Consensus 82 ------~--------------~~t~~ai~la~~a~~~Gadavl-------v~~P~y~~~~~~~l~~~f~~va~a~~lPii 134 (293)
T 1f6k_A 82 ------S--------------VNLKEAVELGKYATELGYDCLS-------AVTPFYYKFSFPEIKHYYDTIIAETGSNMI 134 (293)
T ss_dssp ------C--------------SCHHHHHHHHHHHHHHTCSEEE-------EECCCSSCCCHHHHHHHHHHHHHHHCCCEE
T ss_pred ------C--------------CCHHHHHHHHHHHHhcCCCEEE-------ECCCCCCCCCHHHHHHHHHHHHHhCCCCEE
Confidence 1 1568888777766667999999 5433211 3444567778899999
Q ss_pred EEEech
Q 013861 378 AYQVSG 383 (435)
Q Consensus 378 aYqVSG 383 (435)
.||+-|
T Consensus 135 lYn~P~ 140 (293)
T 1f6k_A 135 VYSIPF 140 (293)
T ss_dssp EEECHH
T ss_pred EEECcc
Confidence 999733
No 215
>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A
Probab=55.43 E-value=12 Score=35.63 Aligned_cols=114 Identities=13% Similarity=0.207 Sum_probs=69.8
Q ss_pred cCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCC--------CCchHHHHHHHHHHCCCCCceeechhhhhcccccccc
Q 013861 234 REDGVIMNDETVHQLCKQAVSQARAGADVVSPSDM--------MDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPF 305 (435)
Q Consensus 234 ~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDM--------MDGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPF 305 (435)
++| .|| -+.++.|++ -+.++|+|-|.+.+. .+=|...++.+.+..+ .+++|+.-..
T Consensus 16 ~~d-~iD-~~~l~~lv~---~li~~Gv~gl~v~GttGE~~~Lt~~Er~~v~~~~~~~~~-grvpviaGvg---------- 79 (292)
T 3daq_A 16 TNN-KVN-LEALKAHVN---FLLENNAQAIIVNGTTAESPTLTTDEKELILKTVIDLVD-KRVPVIAGTG---------- 79 (292)
T ss_dssp ETT-EEC-HHHHHHHHH---HHHHTTCCEEEESSGGGTGGGSCHHHHHHHHHHHHHHHT-TSSCEEEECC----------
T ss_pred CCC-CcC-HHHHHHHHH---HHHHcCCCEEEECccccccccCCHHHHHHHHHHHHHHhC-CCCcEEEeCC----------
Confidence 345 665 344444444 456899998877543 3456677777777654 4677765421
Q ss_pred hhhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCc-hHHHHHHHHhhCCCCeEEEEech
Q 013861 306 REALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLP-YLDVIRLLRDKYPLPIAAYQVSG 383 (435)
Q Consensus 306 RdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~-YLDIIr~vk~~~~lPvaaYqVSG 383 (435)
+ .|.+|++..++.=.+-|||.+| .+.-...||..- -.+=.+.+.+.+++||.-||+-|
T Consensus 80 -----~--------------~~t~~ai~la~~a~~~Gadavl-v~~P~y~~~~~~~l~~~f~~ia~a~~lPiilYn~P~ 138 (292)
T 3daq_A 80 -----T--------------NDTEKSIQASIQAKALGADAIM-LITPYYNKTNQRGLVKHFEAIADAVKLPVVLYNVPS 138 (292)
T ss_dssp -----C--------------SCHHHHHHHHHHHHHHTCSEEE-EECCCSSCCCHHHHHHHHHHHHHHHCSCEEEEECHH
T ss_pred -----c--------------ccHHHHHHHHHHHHHcCCCEEE-ECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEeccc
Confidence 1 2688888877776667999999 111112233210 13344566677899999999743
No 216
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A
Probab=55.43 E-value=23 Score=38.60 Aligned_cols=120 Identities=17% Similarity=0.136 Sum_probs=72.0
Q ss_pred HHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCc
Q 013861 159 LVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGV 238 (435)
Q Consensus 159 l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTshGHcGIv~e~g~ 238 (435)
..+.++.+++.|+..|-+|..+. +---+.++++.+|+.- ..+..++| ||.+ + +|..
T Consensus 199 ~~~~i~~a~~~Gvd~irIf~s~n-------------~l~~l~~~i~~ak~~G--~~v~~~i~---~~~d-----~-~dp~ 254 (718)
T 3bg3_A 199 VFKFCEVAKENGMDVFRVFDSLN-------------YLPNMLLGMEAAGSAG--GVVEAAIS---YTGD-----V-ADPS 254 (718)
T ss_dssp HHHHHHHHHHHTCCEEEEECSSC-------------CHHHHHHHHHHHHTTT--SEEEEEEE---CCSC-----T-TCTT
T ss_pred hHHHHHHHHhcCcCEEEEEecHH-------------HHHHHHHHHHHHHHcC--CeEEEEEE---eecc-----c-cCCC
Confidence 56889999999999999996421 1114567888888764 45555555 3310 0 1110
Q ss_pred cccHHHHHHHHHHHHHHHHcCCCeecCCCCCC--------chHHHHHHHHH-H-CCC--CCceeechhhhhcccccc
Q 013861 239 IMNDETVHQLCKQAVSQARAGADVVSPSDMMD--------GRVGAIRAALD-A-EGF--QHVSIMSYTAKYASSFYG 303 (435)
Q Consensus 239 IdND~Tv~~Lak~Avs~A~AGADiVAPSDMMD--------GrVgAIR~aLD-~-~Gf--~~v~IMSYSaKyASafYG 303 (435)
...-+++.+.+++-...++|||+|+-.||.= -.|.++|+.+. - -|| +|..=|+.+.=.+..-.|
T Consensus 255 -r~~~~~e~~~~~a~~l~~~Ga~~I~l~DT~G~~~P~~v~~lV~~lk~~~p~~~I~~H~Hnd~GlAvANslaAveAG 330 (718)
T 3bg3_A 255 -RTKYSLQYYMGLAEELVRAGTHILCIKDMAGLLKPTACTMLVSSLRDRFPDLPLHIHTHDTSGAGVAAMLACAQAG 330 (718)
T ss_dssp -CCTTCHHHHHHHHHHHHHHTCSEEEEECTTSCCCHHHHHHHHHHHHHHSTTCCEEEECCCTTSCHHHHHHHHHHTT
T ss_pred -CCCCCHHHHHHHHHHHHHcCCCEEEEcCcCCCcCHHHHHHHHHHHHHhCCCCeEEEEECCCccHHHHHHHHHHHhC
Confidence 0111456677777777889999999999865 24666676662 1 111 344445555545544444
No 217
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=55.42 E-value=44 Score=26.22 Aligned_cols=66 Identities=12% Similarity=0.155 Sum_probs=46.3
Q ss_pred CCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhC-CCCeEEEEechHHHHHHHHHHCCCCc
Q 013861 326 ANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMID 398 (435)
Q Consensus 326 ~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~-~lPvaaYqVSGEYaMikaAa~~G~id 398 (435)
.|..||+..... ...|+++... --|++.-+++++.+++.. .+|+...--.++......+.+.|..|
T Consensus 35 ~~~~~a~~~l~~---~~~dlvllD~----~l~~~~g~~l~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~ga~~ 101 (137)
T 3cfy_A 35 ETGRDAIQFIER---SKPQLIILDL----KLPDMSGEDVLDWINQNDIPTSVIIATAHGSVDLAVNLIQKGAED 101 (137)
T ss_dssp SSHHHHHHHHHH---HCCSEEEECS----BCSSSBHHHHHHHHHHTTCCCEEEEEESSCCHHHHHHHHHTTCSE
T ss_pred CCHHHHHHHHHh---cCCCEEEEec----CCCCCCHHHHHHHHHhcCCCCCEEEEEecCcHHHHHHHHHCCccE
Confidence 467787776653 4579988111 127777899999999875 58998877666666666677777654
No 218
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=54.96 E-value=77 Score=25.07 Aligned_cols=63 Identities=13% Similarity=0.051 Sum_probs=46.1
Q ss_pred CCHHHHHHHHHhccccc-ccEEecccCCCcccCCCchHHHHHHHHhhC-CCCeEEEEechHHHHHHHHHHCC
Q 013861 326 ANYREALVEAQADESEG-ADILLFSVLGSQVKPGLPYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALK 395 (435)
Q Consensus 326 ~N~~EAlre~~~D~~EG-ADilM~~~~~~~VKPal~YLDIIr~vk~~~-~lPvaaYqVSGEYaMikaAa~~G 395 (435)
.|..||+..... .. -|+|++.. --|.+.-+++++.+|+.. .+|+...--+.+...+..+.+.|
T Consensus 34 ~~~~~a~~~l~~---~~~~dlvi~D~----~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g 98 (151)
T 3kcn_A 34 ESGPEALACIKK---SDPFSVIMVDM----RMPGMEGTEVIQKARLISPNSVYLMLTGNQDLTTAMEAVNEG 98 (151)
T ss_dssp SSHHHHHHHHHH---SCCCSEEEEES----CCSSSCHHHHHHHHHHHCSSCEEEEEECGGGHHHHHHHHHHT
T ss_pred CCHHHHHHHHHc---CCCCCEEEEeC----CCCCCcHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHHHcC
Confidence 467787776643 23 49998211 126777899999999866 59999888778887787777777
No 219
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=54.93 E-value=33 Score=25.66 Aligned_cols=63 Identities=22% Similarity=0.255 Sum_probs=42.5
Q ss_pred CCHHHHHHHHHhcccccccEEecccCCCccc---CCCchHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCc
Q 013861 326 ANYREALVEAQADESEGADILLFSVLGSQVK---PGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMID 398 (435)
Q Consensus 326 ~N~~EAlre~~~D~~EGADilM~~~~~~~VK---Pal~YLDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G~id 398 (435)
.|..||+..... +.-|+++ +- |.+.-+++++.+++...+|+...--+.+......+.+.|..+
T Consensus 32 ~~~~~~~~~~~~---~~~dlvi-------~D~~l~~~~g~~~~~~l~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~ 97 (121)
T 1zh2_A 32 ETLQRGLLEAAT---RKPDLII-------LDLGLPDGDGIEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADD 97 (121)
T ss_dssp SSHHHHHHHHHH---HCCSEEE-------EESEETTEEHHHHHHHHHTTCCCCEEEEESCCSHHHHHHHHHHTCSE
T ss_pred CCHHHHHHHHhc---CCCCEEE-------EeCCCCCCcHHHHHHHHHhCCCCcEEEEECCCCHHHHHHHHhcCCCe
Confidence 366777766543 4579888 43 666778999999965579998876666655555555555443
No 220
>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A*
Probab=54.92 E-value=25 Score=34.15 Aligned_cols=49 Identities=24% Similarity=0.412 Sum_probs=31.7
Q ss_pred CCHHHHHHHHHhcccccccEEeccc------CCCccc---C-C--CchHHHHHHHHhhCCCCeEE
Q 013861 326 ANYREALVEAQADESEGADILLFSV------LGSQVK---P-G--LPYLDVIRLLRDKYPLPIAA 378 (435)
Q Consensus 326 ~N~~EAlre~~~D~~EGADilM~~~------~~~~VK---P-a--l~YLDIIr~vk~~~~lPvaa 378 (435)
.+.+||.+. .+.|+|+|.++. .|...+ | . ...++.++++++..++||.+
T Consensus 153 ~t~~~a~~a----~~~GaD~i~v~g~~~GGh~g~~~~~~~~~~~~~~~~~~l~~i~~~~~iPVia 213 (369)
T 3bw2_A 153 TTPEEARAV----EAAGADAVIAQGVEAGGHQGTHRDSSEDDGAGIGLLSLLAQVREAVDIPVVA 213 (369)
T ss_dssp SSHHHHHHH----HHTTCSEEEEECTTCSEECCCSSCCGGGTTCCCCHHHHHHHHHHHCSSCEEE
T ss_pred CCHHHHHHH----HHcCCCEEEEeCCCcCCcCCCcccccccccccccHHHHHHHHHHhcCceEEE
Confidence 355565432 357999999632 132211 1 1 34699999999999999875
No 221
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=54.71 E-value=78 Score=25.06 Aligned_cols=70 Identities=14% Similarity=0.124 Sum_probs=47.1
Q ss_pred CCHHHHHHHHHhcc----cccccEEecccCCCcccCCCchHHHHHHHHhh---CCCCeEEEEechHHHHHHHHHHCCCCc
Q 013861 326 ANYREALVEAQADE----SEGADILLFSVLGSQVKPGLPYLDVIRLLRDK---YPLPIAAYQVSGEYSMIKAGGALKMID 398 (435)
Q Consensus 326 ~N~~EAlre~~~D~----~EGADilM~~~~~~~VKPal~YLDIIr~vk~~---~~lPvaaYqVSGEYaMikaAa~~G~id 398 (435)
.|..||+....... ++..|+|+... -=|++.=+|+++.+|+. ..+|+...--+++-..+..+.+.|..|
T Consensus 41 ~~~~~al~~l~~~~~~~~~~~~dlillD~----~lp~~~g~~l~~~l~~~~~~~~~piiils~~~~~~~~~~~~~~ga~~ 116 (149)
T 1i3c_A 41 RDGLAAMAFLQQQGEYENSPRPNLILLDL----NLPKKDGREVLAEIKQNPDLKRIPVVVLTTSHNEDDVIASYELHVNC 116 (149)
T ss_dssp CSHHHHHHHHTTCGGGTTCCCCSEEEECS----CCSSSCHHHHHHHHHHCTTTTTSCEEEEESCCCHHHHHHHHHTTCSE
T ss_pred CCHHHHHHHHHhccccccCCCCCEEEEeC----CCCCCcHHHHHHHHHhCcCcCCCeEEEEECCCChHHHHHHHHcCCcE
Confidence 46677777665321 13579888111 12677778999999985 368999887776666677777777755
Q ss_pred h
Q 013861 399 E 399 (435)
Q Consensus 399 e 399 (435)
.
T Consensus 117 ~ 117 (149)
T 1i3c_A 117 Y 117 (149)
T ss_dssp E
T ss_pred E
Confidence 3
No 222
>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A
Probab=54.58 E-value=19 Score=34.24 Aligned_cols=112 Identities=9% Similarity=0.040 Sum_probs=64.4
Q ss_pred cCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCC--------CCchHHHHHHHHHHCCCCCceeechhhhhcccccccc
Q 013861 234 REDGVIMNDETVHQLCKQAVSQARAGADVVSPSDM--------MDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPF 305 (435)
Q Consensus 234 ~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDM--------MDGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPF 305 (435)
++||.|| -+.++.|++ -+.++|+|-|.+.+. .+=|...++.+.+..+ . |+.-
T Consensus 12 ~~dg~iD-~~~l~~lv~---~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~--g--ViaG------------ 71 (288)
T 2nuw_A 12 DKQGKVN-VDALKTHAK---NLLEKGIDAIFVNGTTGLGPALSKDEKRQNLNALYDVTH--K--LIFQ------------ 71 (288)
T ss_dssp CTTSCBC-HHHHHHHHH---HHHHTTCCEEEETSTTTTGGGSCHHHHHHHHHHHTTTCS--C--EEEE------------
T ss_pred CCCCCcC-HHHHHHHHH---HHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhC--C--eEEe------------
Confidence 3567887 334444444 456789998876543 2235555555554432 1 2111
Q ss_pred hhhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCccc-CCCc-hHHHHHHHHhhCCCCeEEEEech
Q 013861 306 REALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVK-PGLP-YLDVIRLLRDKYPLPIAAYQVSG 383 (435)
Q Consensus 306 RdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VK-Pal~-YLDIIr~vk~~~~lPvaaYqVSG 383 (435)
+ | -.|.+|+++.++.=.+-|||.+|. +--...| |... -.+=.+.+.+.+++||..||+-|
T Consensus 72 ---v------g--------~~~t~~ai~la~~A~~~Gadavlv-~~P~y~~~~s~~~l~~~f~~va~a~~lPiilYn~P~ 133 (288)
T 2nuw_A 72 ---V------G--------SLNLNDVMELVKFSNEMDILGVSS-HSPYYFPRLPEKFLAKYYEEIARISSHSLYIYNYPA 133 (288)
T ss_dssp ---C------C--------CSCHHHHHHHHHHHHTSCCSEEEE-CCCCSSCSCCHHHHHHHHHHHHHHCCSCEEEEECHH
T ss_pred ---e------C--------CCCHHHHHHHHHHHHhcCCCEEEE-cCCcCCCCCCHHHHHHHHHHHHHhcCCCEEEEECch
Confidence 1 1 136789888887767789999991 1111223 3110 12333467788899999999754
No 223
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=54.44 E-value=38 Score=25.54 Aligned_cols=65 Identities=17% Similarity=0.105 Sum_probs=42.1
Q ss_pred CHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCc
Q 013861 327 NYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMID 398 (435)
Q Consensus 327 N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G~id 398 (435)
|..+++.... ++.-|+++... --|++.-+++++.+++...+|+....-+++......+.+.|..|
T Consensus 34 ~~~~~~~~~~---~~~~dlvi~d~----~l~~~~g~~~~~~l~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~ 98 (122)
T 1zgz_A 34 SGAGLREIMQ---NQSVDLILLDI----NLPDENGLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADD 98 (122)
T ss_dssp SHHHHHHHHH---HSCCSEEEEES----CCSSSCHHHHHHHHHTTCCCEEEEEESSCCHHHHHHHHHHTCSE
T ss_pred CHHHHHHHHh---cCCCCEEEEeC----CCCCCChHHHHHHHHhcCCCCEEEEECCCChhhHHHHHHhCHHH
Confidence 4556665443 23478887111 12667779999999996678998877666665555555555543
No 224
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=54.03 E-value=43 Score=25.81 Aligned_cols=66 Identities=15% Similarity=0.097 Sum_probs=43.5
Q ss_pred CCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhh--CCCCeEEEEechHHHHHHHHHHCCCC
Q 013861 326 ANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDK--YPLPIAAYQVSGEYSMIKAGGALKMI 397 (435)
Q Consensus 326 ~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~--~~lPvaaYqVSGEYaMikaAa~~G~i 397 (435)
.+..+|+..... ....|+|+... --|.+.-+++++.+|+. ..+|+...--..+......+.+.|..
T Consensus 38 ~~~~~a~~~~~~--~~~~dlvi~D~----~l~~~~g~~~~~~l~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~ 105 (136)
T 3hdv_A 38 DGAEEARLYLHY--QKRIGLMITDL----RMQPESGLDLIRTIRASERAALSIIVVSGDTDVEEAVDVMHLGVV 105 (136)
T ss_dssp SSHHHHHHHHHH--CTTEEEEEECS----CCSSSCHHHHHHHHHTSTTTTCEEEEEESSCCHHHHHHHHHTTCS
T ss_pred CCHHHHHHHHHh--CCCCcEEEEec----cCCCCCHHHHHHHHHhcCCCCCCEEEEeCCCChHHHHHHHhCCcc
Confidence 366777766544 22378888111 12677789999999986 46899988766655555556666543
No 225
>3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis}
Probab=54.03 E-value=16 Score=35.36 Aligned_cols=109 Identities=20% Similarity=0.255 Sum_probs=71.6
Q ss_pred CCCccccHHHHHHHHHHHHHHHHcCCCeecCCCC--------CCchHHHHHHHHHHCCCCCceeechhhhhcccccccch
Q 013861 235 EDGVIMNDETVHQLCKQAVSQARAGADVVSPSDM--------MDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFR 306 (435)
Q Consensus 235 e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDM--------MDGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFR 306 (435)
+||.||- +.++.|+ --+.++|+|-|.+.+. .+=|...++.+.+..+ .+++|+.-..
T Consensus 25 ~dg~iD~-~~l~~lv---~~li~~Gv~gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~-grvpviaGvg----------- 88 (318)
T 3qfe_A 25 KTDTLDL-ASQERYY---AYLARSGLTGLVILGTNAEAFLLTREERAQLIATARKAVG-PDFPIMAGVG----------- 88 (318)
T ss_dssp TTTEECH-HHHHHHH---HHHHTTTCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHC-TTSCEEEECC-----------
T ss_pred CCCCCCH-HHHHHHH---HHHHHcCCCEEEeCccccChhhCCHHHHHHHHHHHHHHhC-CCCcEEEeCC-----------
Confidence 5678873 3344443 4566789998776542 3456677777777664 4677775421
Q ss_pred hhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCch---------HHHHHHHHhhCCCCeE
Q 013861 307 EALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPY---------LDVIRLLRDKYPLPIA 377 (435)
Q Consensus 307 dA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~Y---------LDIIr~vk~~~~lPva 377 (435)
+ .|.+|++..++.=.+-|||.+| |=|-..| .+=.+.+.+.+++||.
T Consensus 89 ----~--------------~~t~~ai~la~~a~~~Gadavl-------v~~P~y~~kp~~~~~l~~~f~~ia~a~~lPii 143 (318)
T 3qfe_A 89 ----A--------------HSTRQVLEHINDASVAGANYVL-------VLPPAYFGKATTPPVIKSFFDDVSCQSPLPVV 143 (318)
T ss_dssp ----C--------------SSHHHHHHHHHHHHHHTCSEEE-------ECCCCC---CCCHHHHHHHHHHHHHHCSSCEE
T ss_pred ----C--------------CCHHHHHHHHHHHHHcCCCEEE-------EeCCcccCCCCCHHHHHHHHHHHHhhCCCCEE
Confidence 1 2678888888777778999999 5444222 2234566778899999
Q ss_pred EEEechH
Q 013861 378 AYQVSGE 384 (435)
Q Consensus 378 aYqVSGE 384 (435)
-||+-|-
T Consensus 144 lYn~P~~ 150 (318)
T 3qfe_A 144 IYNFPGV 150 (318)
T ss_dssp EEECCC-
T ss_pred EEeCCcc
Confidence 9999653
No 226
>3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A
Probab=53.97 E-value=17 Score=34.94 Aligned_cols=109 Identities=11% Similarity=0.108 Sum_probs=71.6
Q ss_pred cCCCccccHHHHHHHHHHHHHHHHcCCCeecCCC--------CCCchHHHHHHHHHHCCCCCceeechhhhhcccccccc
Q 013861 234 REDGVIMNDETVHQLCKQAVSQARAGADVVSPSD--------MMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPF 305 (435)
Q Consensus 234 ~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSD--------MMDGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPF 305 (435)
++||.||-+ .++.+++ -+.++|+|-|.+.. -.+=|...++.+.+..+ .+++|+.-..
T Consensus 27 ~~dg~iD~~-~l~~lv~---~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~-gr~pviaGvg---------- 91 (307)
T 3s5o_A 27 TATAEVDYG-KLEENLH---KLGTFPFRGFVVQGSNGEFPFLTSSERLEVVSRVRQAMP-KNRLLLAGSG---------- 91 (307)
T ss_dssp CTTSCBCHH-HHHHHHH---HHTTSCCSEEEESSGGGTGGGSCHHHHHHHHHHHHHTSC-TTSEEEEECC----------
T ss_pred CCCCCcCHH-HHHHHHH---HHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHcC-CCCcEEEecC----------
Confidence 356777633 4444443 46789999886554 24456777777777665 4677765421
Q ss_pred hhhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCch------HHH---HHHHHhhCCCCe
Q 013861 306 REALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPY------LDV---IRLLRDKYPLPI 376 (435)
Q Consensus 306 RdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~Y------LDI---Ir~vk~~~~lPv 376 (435)
+ .|.+|+++.++.=.+-|||.+| |=|-..| =.+ .+.+.+.+++||
T Consensus 92 -----~--------------~~t~~ai~la~~A~~~Gadavl-------v~~P~y~~~~~s~~~l~~~f~~ia~a~~lPi 145 (307)
T 3s5o_A 92 -----C--------------ESTQATVEMTVSMAQVGADAAM-------VVTPCYYRGRMSSAALIHHYTKVADLSPIPV 145 (307)
T ss_dssp -----C--------------SSHHHHHHHHHHHHHTTCSEEE-------EECCCTTGGGCCHHHHHHHHHHHHHHCSSCE
T ss_pred -----C--------------CCHHHHHHHHHHHHHcCCCEEE-------EcCCCcCCCCCCHHHHHHHHHHHHhhcCCCE
Confidence 1 2688888887777778999999 5443322 123 346667889999
Q ss_pred EEEEech
Q 013861 377 AAYQVSG 383 (435)
Q Consensus 377 aaYqVSG 383 (435)
.-||+-|
T Consensus 146 ilYn~P~ 152 (307)
T 3s5o_A 146 VLYSVPA 152 (307)
T ss_dssp EEEECHH
T ss_pred EEEeCCc
Confidence 9999854
No 227
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=53.81 E-value=50 Score=25.17 Aligned_cols=65 Identities=17% Similarity=0.197 Sum_probs=43.0
Q ss_pred CHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhC-CCCeEEEEechHHHHHHHHHHCCCCc
Q 013861 327 NYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMID 398 (435)
Q Consensus 327 N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~-~lPvaaYqVSGEYaMikaAa~~G~id 398 (435)
|..+++.... ++..|+++... --|++.=+++++.+++.. .+|+...--..+......+.+.|..+
T Consensus 35 ~~~~~~~~~~---~~~~dlvi~D~----~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~ 100 (126)
T 1dbw_A 35 SAEAFLAFAP---DVRNGVLVTDL----RMPDMSGVELLRNLGDLKINIPSIVITGHGDVPMAVEAMKAGAVD 100 (126)
T ss_dssp CHHHHHHHGG---GCCSEEEEEEC----CSTTSCHHHHHHHHHHTTCCCCEEEEECTTCHHHHHHHHHTTCSE
T ss_pred CHHHHHHHHh---cCCCCEEEEEC----CCCCCCHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHhCHHH
Confidence 5566665443 23568887211 126777799999999865 69999887666666666666666644
No 228
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=53.53 E-value=13 Score=37.71 Aligned_cols=58 Identities=21% Similarity=0.380 Sum_probs=38.6
Q ss_pred ccccccEEec-ccCCCcccCCCchHHHHHHHHhhC-CCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhccc
Q 013861 339 ESEGADILLF-SVLGSQVKPGLPYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGAD 416 (435)
Q Consensus 339 ~~EGADilM~-~~~~~~VKPal~YLDIIr~vk~~~-~lPvaaYqVSGEYaMikaAa~~G~ide~~~v~Esl~~ikRAGAd 416 (435)
++.|+|+|.+ +..|. | -..+++|+.+|+.+ ++||.+-.| .+ .|....+.++|||
T Consensus 264 ~~aG~d~v~i~~~~G~---~-~~~~~~i~~i~~~~~~~pvi~~~v---------------~t-----~~~a~~l~~aGad 319 (514)
T 1jcn_A 264 TQAGVDVIVLDSSQGN---S-VYQIAMVHYIKQKYPHLQVIGGNV---------------VT-----AAQAKNLIDAGVD 319 (514)
T ss_dssp HHTTCSEEEECCSCCC---S-HHHHHHHHHHHHHCTTCEEEEEEE---------------CS-----HHHHHHHHHHTCS
T ss_pred HHcCCCEEEeeccCCc---c-hhHHHHHHHHHHhCCCCceEeccc---------------ch-----HHHHHHHHHcCCC
Confidence 4589999993 11121 1 12579999999999 899987555 11 2335566778999
Q ss_pred Eeeh
Q 013861 417 IILT 420 (435)
Q Consensus 417 ~IiT 420 (435)
.|+.
T Consensus 320 ~I~v 323 (514)
T 1jcn_A 320 GLRV 323 (514)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8843
No 229
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=53.50 E-value=57 Score=33.45 Aligned_cols=47 Identities=23% Similarity=0.323 Sum_probs=34.0
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEe
Q 013861 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYT 217 (435)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~Iit 217 (435)
...+.++.+++.|+..|.|-.. . | ....+...|+.||+++|++.|+.
T Consensus 231 d~~~~a~~l~~aG~d~I~id~a--~------g-----~~~~~~~~i~~ir~~~p~~~Vi~ 277 (496)
T 4fxs_A 231 GNEERVKALVEAGVDVLLIDSS--H------G-----HSEGVLQRIRETRAAYPHLEIIG 277 (496)
T ss_dssp CCHHHHHHHHHTTCSEEEEECS--C------T-----TSHHHHHHHHHHHHHCTTCCEEE
T ss_pred chHHHHHHHHhccCceEEeccc--c------c-----cchHHHHHHHHHHHHCCCceEEE
Confidence 3578899999999997766432 1 1 11235578999999999987776
No 230
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2
Probab=53.34 E-value=9.5 Score=35.03 Aligned_cols=62 Identities=23% Similarity=0.137 Sum_probs=39.0
Q ss_pred cccccccEEec----ccCCCcccCCCchHHHHHHHHhhC-----CCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHH
Q 013861 338 DESEGADILLF----SVLGSQVKPGLPYLDVIRLLRDKY-----PLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLM 408 (435)
Q Consensus 338 D~~EGADilM~----~~~~~~VKPal~YLDIIr~vk~~~-----~lPvaaYqVSGEYaMikaAa~~G~ide~~~v~Esl~ 408 (435)
.+.+|+|+|.+ ...|.| |-.-.-++-|+++|+.. ++||.+ -|-|+.+ .+.
T Consensus 130 ~~~~~~D~v~~msv~pg~ggq-~~~~~~~~~i~~lr~~~~~~~~~~~I~v---------------~GGI~~~-----~~~ 188 (230)
T 1tqj_A 130 YVLPVCDLILIMSVNPGFGGQ-SFIPEVLPKIRALRQMCDERGLDPWIEV---------------DGGLKPN-----NTW 188 (230)
T ss_dssp TTGGGCSEEEEESSCC----C-CCCGGGHHHHHHHHHHHHHHTCCCEEEE---------------ESSCCTT-----TTH
T ss_pred HHHhcCCEEEEEEeccccCCc-cCcHHHHHHHHHHHHHHHhcCCCCcEEE---------------ECCcCHH-----HHH
Confidence 34568998842 223333 22224588889888876 788865 5667764 445
Q ss_pred HHHHhcccEeeh
Q 013861 409 CLRRAGADIILT 420 (435)
Q Consensus 409 ~ikRAGAd~IiT 420 (435)
.++.||||.++.
T Consensus 189 ~~~~aGad~vvv 200 (230)
T 1tqj_A 189 QVLEAGANAIVA 200 (230)
T ss_dssp HHHHHTCCEEEE
T ss_pred HHHHcCCCEEEE
Confidence 678899998874
No 231
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=53.32 E-value=51 Score=25.54 Aligned_cols=60 Identities=5% Similarity=-0.035 Sum_probs=40.5
Q ss_pred CHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhC-CCCeEEEEechHHHHHHHHHHCCCC
Q 013861 327 NYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMI 397 (435)
Q Consensus 327 N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~-~lPvaaYqVSGEYaMikaAa~~G~i 397 (435)
+..||+..... +..|+|+ -|.+.-+++++.+++.. .+|+..+--..+-..+..+.+.|..
T Consensus 50 ~~~~al~~l~~---~~~dlvi--------~~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~ 110 (137)
T 2pln_A 50 SLEDGEYLMDI---RNYDLVM--------VSDKNALSFVSRIKEKHSSIVVLVSSDNPTSEEEVHAFEQGAD 110 (137)
T ss_dssp CHHHHHHHHHH---SCCSEEE--------ECSTTHHHHHHHHHHHSTTSEEEEEESSCCHHHHHHHHHTTCS
T ss_pred CHHHHHHHHHc---CCCCEEE--------EcCccHHHHHHHHHhcCCCccEEEEeCCCCHHHHHHHHHcCCc
Confidence 56677766543 4578877 36677899999999885 6899887655544444455555543
No 232
>1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A*
Probab=53.08 E-value=22 Score=33.77 Aligned_cols=111 Identities=15% Similarity=0.150 Sum_probs=64.6
Q ss_pred cCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCC--------CCchHHHHHHHHHHCCCCCceeechhhhhcccccccc
Q 013861 234 REDGVIMNDETVHQLCKQAVSQARAGADVVSPSDM--------MDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPF 305 (435)
Q Consensus 234 ~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDM--------MDGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPF 305 (435)
++||.||- +.++.|+ --+.++|+|-|.+.+. .+=|...++.+.+..+ . |+.-
T Consensus 12 ~~dg~iD~-~~l~~lv---~~li~~Gv~gl~~~GttGE~~~Ls~eEr~~v~~~~~~~~~--g--viaG------------ 71 (293)
T 1w3i_A 12 TKDNRIDK-EKLKIHA---ENLIRKGIDKLFVNGTTGLGPSLSPEEKLENLKAVYDVTN--K--IIFQ------------ 71 (293)
T ss_dssp CTTSSBCH-HHHHHHH---HHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHTTCS--C--EEEE------------
T ss_pred CCCCCcCH-HHHHHHH---HHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHcC--C--EEEe------------
Confidence 35678873 3344444 3456789997776543 1235666666665442 1 2211
Q ss_pred hhhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCccc-CCCc-hHHHHHHHHhhCCCCeEEEEec
Q 013861 306 REALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVK-PGLP-YLDVIRLLRDKYPLPIAAYQVS 382 (435)
Q Consensus 306 RdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VK-Pal~-YLDIIr~vk~~~~lPvaaYqVS 382 (435)
+ | -.|.+|+++.++.=.+-|||.+|. +--...| |..- -.+=.+.+.+.+++||..||+-
T Consensus 72 ---v------g--------~~~t~~ai~la~~A~~~Gadavlv-~~P~y~~~~s~~~l~~~f~~va~a~~lPiilYn~P 132 (293)
T 1w3i_A 72 ---V------G--------GLNLDDAIRLAKLSKDFDIVGIAS-YAPYYYPRMSEKHLVKYFKTLCEVSPHPVYLYNYP 132 (293)
T ss_dssp ---C------C--------CSCHHHHHHHHHHGGGSCCSEEEE-ECCCSCSSCCHHHHHHHHHHHHHHCSSCEEEEECH
T ss_pred ---c------C--------CCCHHHHHHHHHHHHhcCCCEEEE-cCCCCCCCCCHHHHHHHHHHHHhhCCCCEEEEECc
Confidence 1 1 136789998888777789999991 1111123 2110 1233346677889999999973
No 233
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=52.96 E-value=60 Score=25.69 Aligned_cols=94 Identities=12% Similarity=0.105 Sum_probs=61.4
Q ss_pred CCCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhC-CCCeEEEEechHHHHHHHHHHCCCCch----
Q 013861 325 PANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMIDE---- 399 (435)
Q Consensus 325 p~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~-~lPvaaYqVSGEYaMikaAa~~G~ide---- 399 (435)
..+..||+..... +..|+|+... --|.+.-+++++.+++.. .+|+..+--..+......+.+.|..|.
T Consensus 37 ~~~~~~a~~~l~~---~~~dlii~D~----~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp 109 (153)
T 3cz5_A 37 AADAGEAYRLYRE---TTPDIVVMDL----TLPGPGGIEATRHIRQWDGAARILIFTMHQGSAFALKAFEAGASGYVTKS 109 (153)
T ss_dssp ESSHHHHHHHHHT---TCCSEEEECS----CCSSSCHHHHHHHHHHHCTTCCEEEEESCCSHHHHHHHHHTTCSEEEETT
T ss_pred eCCHHHHHHHHhc---CCCCEEEEec----CCCCCCHHHHHHHHHHhCCCCeEEEEECCCCHHHHHHHHHCCCcEEEecC
Confidence 4577888876653 3489998211 125667799999999976 599999877777777777888887652
Q ss_pred --hhHHHHHHHHHHHhcccEeehhcHHHHHHHH
Q 013861 400 --QRVMMESLMCLRRAGADIILTYFALQAARCL 430 (435)
Q Consensus 400 --~~~v~Esl~~ikRAGAd~IiTYfA~~~a~~L 430 (435)
.+.+.+.+..+.+-. .|+.+++++.|
T Consensus 110 ~~~~~L~~~i~~~~~~~-----~~~~~~~~~~l 137 (153)
T 3cz5_A 110 SDPAELVQAIEAILAGR-----RAMSPDIAQEI 137 (153)
T ss_dssp SCTTHHHHHHHHHTTTC-----CEECHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCC-----ccCChHHHHHH
Confidence 234555555544332 34455555544
No 234
>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2
Probab=52.96 E-value=22 Score=31.17 Aligned_cols=48 Identities=21% Similarity=0.346 Sum_probs=33.0
Q ss_pred CCCCCHHHHHHHHHhcccccccEEecccCCCcccCCC--ch----HHHHHHHHhhCCCCeEE
Q 013861 323 MNPANYREALVEAQADESEGADILLFSVLGSQVKPGL--PY----LDVIRLLRDKYPLPIAA 378 (435)
Q Consensus 323 mdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal--~Y----LDIIr~vk~~~~lPvaa 378 (435)
+|+.+..|+++.+. +.|+|++=+- ++.+. .+ +++++++++.++.|+.+
T Consensus 13 ~D~~~~~~~~~~~~---~~G~~~i~~~-----~~dg~~~~~~~~g~~~i~~i~~~~~~~~~v 66 (220)
T 2fli_A 13 ADYANFASELARIE---ETDAEYVHID-----IMDGQFVPNISFGADVVASMRKHSKLVFDC 66 (220)
T ss_dssp SCGGGHHHHHHHHH---HTTCCEEEEE-----EEBSSSSSCBCBCHHHHHHHHTTCCSEEEE
T ss_pred CCHHHHHHHHHHHH---HcCCCEEEEE-----eecCCCCCccccCHHHHHHHHHhCCCCEEE
Confidence 56678888877765 3589985311 33332 34 89999999988777655
No 235
>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2
Probab=52.76 E-value=41 Score=30.02 Aligned_cols=53 Identities=23% Similarity=0.155 Sum_probs=32.6
Q ss_pred CCCCCHHHHHHHHHhcccccccEEeccc-CCCcccCCCchHHHHHHHHhhCCCCeEE
Q 013861 323 MNPANYREALVEAQADESEGADILLFSV-LGSQVKPGLPYLDVIRLLRDKYPLPIAA 378 (435)
Q Consensus 323 mdp~N~~EAlre~~~D~~EGADilM~~~-~~~~VKPal~YLDIIr~vk~~~~lPvaa 378 (435)
.|+.+..|.++.+. +-|+|+|=+-+ -|..++-...-+++++++++.++.|+.+
T Consensus 20 ~d~~~~~~~i~~~~---~~G~d~i~l~~~dg~f~~~~~~~~~~i~~l~~~~~~~~~v 73 (230)
T 1rpx_A 20 ANFSKLGEQVKAIE---QAGCDWIHVDVMDGRFVPNITIGPLVVDSLRPITDLPLDV 73 (230)
T ss_dssp SCGGGHHHHHHHHH---HTTCCCEEEEEEBSSSSSCBCCCHHHHHHHGGGCCSCEEE
T ss_pred CCHHHHHHHHHHHH---HCCCCEEEEeeccCCcccccccCHHHHHHHHhccCCcEEE
Confidence 35667777777664 45999886322 1222222222379999999988777544
No 236
>2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A*
Probab=52.70 E-value=51 Score=31.21 Aligned_cols=86 Identities=14% Similarity=0.161 Sum_probs=49.5
Q ss_pred cccCCCCCCHHHHHHHHHhcccccccEEecccCCCcc----cCCC-------chHHHHHHHHhhCCCCeEEE---EechH
Q 013861 319 KTYQMNPANYREALVEAQADESEGADILLFSVLGSQV----KPGL-------PYLDVIRLLRDKYPLPIAAY---QVSGE 384 (435)
Q Consensus 319 ktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~V----KPal-------~YLDIIr~vk~~~~lPvaaY---qVSGE 384 (435)
..|++-..|.++. +.+ .+-|+|.|.++.-.|.. |=.. -..++|+.+|+ ..++|-+| .+|.|
T Consensus 74 ~~~~~l~~~~~~i-~~a---~~ag~~~v~i~~~~sd~~~~~~~~~~~~e~l~~~~~~i~~a~~-~G~~v~~~l~~~~~~~ 148 (298)
T 2cw6_A 74 INYPVLTPNLKGF-EAA---VAAGAKEVVIFGAASELFTKKNINCSIEESFQRFDAILKAAQS-ANISVRGYVSCALGCP 148 (298)
T ss_dssp CBCCEECCSHHHH-HHH---HHTTCSEEEEEEESCHHHHHHHHSCCHHHHHHHHHHHHHHHHH-TTCEEEEEEETTTCBT
T ss_pred CEEEEEcCCHHhH-HHH---HHCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH-CCCeEEEEEEEEeeCC
Confidence 3566655675542 222 23599998832211110 0000 22455666665 46777554 46667
Q ss_pred HHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEe
Q 013861 385 YSMIKAGGALKMIDEQRVMMESLMCLRRAGADII 418 (435)
Q Consensus 385 YaMikaAa~~G~ide~~~v~Esl~~ikRAGAd~I 418 (435)
| .|..|. +.+.|....+..+|||.|
T Consensus 149 ~--------~~~~~~-~~~~~~~~~~~~~Ga~~i 173 (298)
T 2cw6_A 149 Y--------EGKISP-AKVAEVTKKFYSMGCYEI 173 (298)
T ss_dssp T--------TBSCCH-HHHHHHHHHHHHTTCSEE
T ss_pred c--------CCCCCH-HHHHHHHHHHHHcCCCEE
Confidence 6 344555 477899999999999986
No 237
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=52.53 E-value=85 Score=24.83 Aligned_cols=63 Identities=6% Similarity=0.019 Sum_probs=46.0
Q ss_pred CCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhC-CCCeEEEEechHHHHHHHHHHCC
Q 013861 326 ANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALK 395 (435)
Q Consensus 326 ~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~-~lPvaaYqVSGEYaMikaAa~~G 395 (435)
.+..||+..... ...|+|++.. --|.+.-+++++.+++.. .+|+...--..+...+..+.+.|
T Consensus 38 ~~~~~a~~~l~~---~~~dlvi~d~----~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g 101 (154)
T 2rjn_A 38 TSPLDALEALKG---TSVQLVISDM----RMPEMGGEVFLEQVAKSYPDIERVVISGYADAQATIDAVNRG 101 (154)
T ss_dssp SCHHHHHHHHTT---SCCSEEEEES----SCSSSCHHHHHHHHHHHCTTSEEEEEECGGGHHHHHHHHHTT
T ss_pred CCHHHHHHHHhc---CCCCEEEEec----CCCCCCHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHhcc
Confidence 466777766543 3589998221 126677899999999876 69999988877777777777777
No 238
>4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A
Probab=51.97 E-value=13 Score=36.20 Aligned_cols=56 Identities=18% Similarity=-0.014 Sum_probs=34.6
Q ss_pred cCCCCCCHHHHHHHHHhcccccccEEecccCCC--cccCC----CchHHHHHHHHhhCCCCeEEEE
Q 013861 321 YQMNPANYREALVEAQADESEGADILLFSVLGS--QVKPG----LPYLDVIRLLRDKYPLPIAAYQ 380 (435)
Q Consensus 321 YQmdp~N~~EAlre~~~D~~EGADilM~~~~~~--~VKPa----l~YLDIIr~vk~~~~lPvaaYq 380 (435)
--||+.+.+.| +.. .+.|||-|||--=.+ ..+=+ +.-++.|+++++...+||.+..
T Consensus 24 v~~d~~~~e~A-~~y---e~~GA~~lsvLe~~~~Di~~~~g~~R~~~~~~i~~i~~~v~iPvl~k~ 85 (297)
T 4adt_A 24 VIMDVKNVEQA-KIA---EKAGAIGVMILENIPSELRNTDGVARSVDPLKIEEIRKCISINVLAKV 85 (297)
T ss_dssp EEEEESSHHHH-HHH---HHHTCSEEEECCCCC-----CCCCCCCCCHHHHHHHHTTCCSEEEEEE
T ss_pred cccCCCcHHHH-HHH---HHcCCCEEEEecCCCCcchhcCCcccCCCHHHHHHHHHhcCCCEEEec
Confidence 34667677555 222 368999999221010 00011 1368999999999999999863
No 239
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=51.91 E-value=28 Score=26.56 Aligned_cols=63 Identities=13% Similarity=0.054 Sum_probs=40.7
Q ss_pred CCHHHHHHHHHhcccccccEEecccCCCcccCC-CchHHHHHHHHhhC-CCCeEEEEechHHHHHHHHHHC
Q 013861 326 ANYREALVEAQADESEGADILLFSVLGSQVKPG-LPYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGAL 394 (435)
Q Consensus 326 ~N~~EAlre~~~D~~EGADilM~~~~~~~VKPa-l~YLDIIr~vk~~~-~lPvaaYqVSGEYaMikaAa~~ 394 (435)
.|..||+...... +..|+|+... . -|. +.-+++++.+++.. .+|+...--..+......+...
T Consensus 36 ~~~~~a~~~l~~~--~~~dlvi~d~---~-l~~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~ 100 (132)
T 2rdm_A 36 SSGAKAIEMLKSG--AAIDGVVTDI---R-FCQPPDGWQVARVAREIDPNMPIVYISGHAALEWASNGVPD 100 (132)
T ss_dssp SSHHHHHHHHHTT--CCCCEEEEES---C-CSSSSCHHHHHHHHHHHCTTCCEEEEESSCCTTHHHHSCTT
T ss_pred CCHHHHHHHHHcC--CCCCEEEEee---e-CCCCCCHHHHHHHHHhcCCCCCEEEEeCCccHHHHHhhcCC
Confidence 4667777666532 2589998211 1 254 67799999999876 5999988665555444444433
No 240
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=51.87 E-value=51 Score=28.15 Aligned_cols=80 Identities=25% Similarity=0.322 Sum_probs=55.8
Q ss_pred CHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCch------h
Q 013861 327 NYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDE------Q 400 (435)
Q Consensus 327 N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G~ide------~ 400 (435)
|..||+..... ...|+++... --|.+.-+++++.+++...+|+...--..+......+.+.|..|. .
T Consensus 36 ~~~~al~~~~~---~~~dlvllD~----~l~~~~g~~~~~~l~~~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~ 108 (230)
T 2oqr_A 36 DGPAALAEFDR---AGADIVLLDL----MLPGMSGTDVCKQLRARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSA 108 (230)
T ss_dssp SHHHHHHHHHH---HCCSEEEEES----SCSSSCHHHHHHHHHHHCSCSEEEEECCHHHHHHHHHHHHCCSCCCCSSCCH
T ss_pred CHHHHHHHHhc---cCCCEEEEEC----CCCCCCHHHHHHHHHcCCCCCEEEEeCCCcHHHHHHHHHcCCCEEEeCCCCH
Confidence 56777766543 3579988221 126777899999999987899999988888888877777776442 2
Q ss_pred hHHHHHHHHHHHh
Q 013861 401 RVMMESLMCLRRA 413 (435)
Q Consensus 401 ~~v~Esl~~ikRA 413 (435)
+.+.+.+..+.+-
T Consensus 109 ~~l~~~i~~~~~~ 121 (230)
T 2oqr_A 109 RELIARIRAVLRR 121 (230)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhh
Confidence 4556666655543
No 241
>3t7v_A Methylornithine synthase PYLB; TIM-barrel fold, mutase, [4Fe-4S]-cluster, SAM, lysine, transferase; HET: SAM MD0; 1.50A {Methanosarcina barkeri}
Probab=51.83 E-value=1.3e+02 Score=28.52 Aligned_cols=33 Identities=21% Similarity=0.304 Sum_probs=23.1
Q ss_pred HHHHcCCCeecCCCCCC-----------------chHHHHHHHHHHCCCC
Q 013861 254 SQARAGADVVSPSDMMD-----------------GRVGAIRAALDAEGFQ 286 (435)
Q Consensus 254 s~A~AGADiVAPSDMMD-----------------GrVgAIR~aLD~~Gf~ 286 (435)
.--.+||+.+.|.=|=+ -.+..+++.+.++||+
T Consensus 288 ~~l~~Gan~~~~~~~~~~~~ag~~~~~~~~~~~~~~~~~~~~~i~~~G~~ 337 (350)
T 3t7v_A 288 LRLNAGANIVTSILPPDSQLEGVANYDRDLEERDRDIKSVVRRLEIMGMK 337 (350)
T ss_dssp HHHHTTCCEEEEECCSSCCCCCSSCTTTTCSSCCCCHHHHHHHHHHHTCE
T ss_pred HHHhcCCceecCCCCCCCCCCCCCCCcccchhccCCHHHHHHHHHHcCCc
Confidence 33478999988763323 1568888888888884
No 242
>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1
Probab=51.47 E-value=17 Score=35.84 Aligned_cols=59 Identities=22% Similarity=0.361 Sum_probs=37.9
Q ss_pred ccccccEEecccCCCcccCCCchHHHHHHHHhhC-CCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccE
Q 013861 339 ESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADI 417 (435)
Q Consensus 339 ~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~-~lPvaaYqVSGEYaMikaAa~~G~ide~~~v~Esl~~ikRAGAd~ 417 (435)
++.|+|+|.+.. ++--| -..+++|+.+|+.+ ++||.+-.| .+ .|....+.++|||.
T Consensus 162 ~~~G~d~i~i~~--~~g~~-~~~~e~i~~ir~~~~~~pviv~~v---------------~~-----~~~a~~a~~~Gad~ 218 (404)
T 1eep_A 162 VKAHVDILVIDS--AHGHS-TRIIELIKKIKTKYPNLDLIAGNI---------------VT-----KEAALDLISVGADC 218 (404)
T ss_dssp HHTTCSEEEECC--SCCSS-HHHHHHHHHHHHHCTTCEEEEEEE---------------CS-----HHHHHHHHTTTCSE
T ss_pred HHCCCCEEEEeC--CCCCh-HHHHHHHHHHHHHCCCCeEEEcCC---------------Cc-----HHHHHHHHhcCCCE
Confidence 468999998311 11122 24789999999999 899987333 12 23344555688888
Q ss_pred eeh
Q 013861 418 ILT 420 (435)
Q Consensus 418 IiT 420 (435)
|+.
T Consensus 219 I~v 221 (404)
T 1eep_A 219 LKV 221 (404)
T ss_dssp EEE
T ss_pred EEE
Confidence 754
No 243
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus}
Probab=51.42 E-value=20 Score=34.75 Aligned_cols=72 Identities=22% Similarity=0.269 Sum_probs=48.1
Q ss_pred ccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhC--CCCeEEEEechHHHHHHHHHHCCCC
Q 013861 320 TYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKY--PLPIAAYQVSGEYSMIKAGGALKMI 397 (435)
Q Consensus 320 tYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~--~lPvaaYqVSGEYaMikaAa~~G~i 397 (435)
--..-..|.+|+ +|+. +.|||+|| +.| .+.+-++++.+.. ++|+.| | |-|
T Consensus 198 ~IgVev~t~eea-~eA~---~aGaD~I~-------ld~--~~~~~~k~av~~v~~~ipi~A---s------------GGI 249 (286)
T 1x1o_A 198 KVEVEVRSLEEL-EEAL---EAGADLIL-------LDN--FPLEALREAVRRVGGRVPLEA---S------------GNM 249 (286)
T ss_dssp CEEEEESSHHHH-HHHH---HHTCSEEE-------EES--CCHHHHHHHHHHHTTSSCEEE---E------------SSC
T ss_pred EEEEEeCCHHHH-HHHH---HcCCCEEE-------ECC--CCHHHHHHHHHHhCCCCeEEE---E------------cCC
Confidence 344556677775 4443 46999999 776 3667777766554 577765 3 346
Q ss_pred chhhHHHHHHHHHHHhcccEeehhcHH
Q 013861 398 DEQRVMMESLMCLRRAGADIILTYFAL 424 (435)
Q Consensus 398 de~~~v~Esl~~ikRAGAd~IiTYfA~ 424 (435)
+ .|.+..+..+|+|+|.+-..-
T Consensus 250 t-----~eni~~~a~tGvD~IsVgs~~ 271 (286)
T 1x1o_A 250 T-----LERAKAAAEAGVDYVSVGALT 271 (286)
T ss_dssp C-----HHHHHHHHHHTCSEEECTHHH
T ss_pred C-----HHHHHHHHHcCCCEEEEcHHH
Confidence 6 456678999999999864433
No 244
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=51.33 E-value=75 Score=32.72 Aligned_cols=47 Identities=19% Similarity=0.316 Sum_probs=34.2
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEe
Q 013861 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYT 217 (435)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~Iit 217 (435)
...+.++.+++.|+..|.+... . | +.. -+...|+.||+.||++.|+.
T Consensus 256 d~~era~aLveaGvd~I~Id~a--~------g----~~~-~v~~~i~~i~~~~~~~~vi~ 302 (511)
T 3usb_A 256 DAMTRIDALVKASVDAIVLDTA--H------G----HSQ-GVIDKVKEVRAKYPSLNIIA 302 (511)
T ss_dssp THHHHHHHHHHTTCSEEEEECS--C------T----TSH-HHHHHHHHHHHHCTTSEEEE
T ss_pred chHHHHHHHHhhccceEEeccc--c------c----chh-hhhhHHHHHHHhCCCceEEe
Confidence 4688899999999998888532 1 1 111 24569999999999876663
No 245
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=50.74 E-value=54 Score=25.10 Aligned_cols=67 Identities=21% Similarity=0.227 Sum_probs=46.5
Q ss_pred CCCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhh-C-CCCeEEEEechHHHHHHHHHHCCCCc
Q 013861 325 PANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDK-Y-PLPIAAYQVSGEYSMIKAGGALKMID 398 (435)
Q Consensus 325 p~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~-~-~lPvaaYqVSGEYaMikaAa~~G~id 398 (435)
..|..||+..... +..|+++... .-|.+.-+|+++.+++. . ..|+...--+++......+.+.|..+
T Consensus 34 ~~~~~~a~~~~~~---~~~dlvllD~----~l~~~~g~~~~~~l~~~~~~~~~ii~ls~~~~~~~~~~~~~~ga~~ 102 (130)
T 1dz3_A 34 AYNGQDCLQMLEE---KRPDILLLDI----IMPHLDGLAVLERIRAGFEHQPNVIMLTAFGQEDVTKKAVELGASY 102 (130)
T ss_dssp ESSHHHHHHHHHH---HCCSEEEEES----CCSSSCHHHHHHHHHHHCSSCCEEEEEEETTCHHHHHHHHHTTCEE
T ss_pred eCCHHHHHHHHhc---CCCCEEEEec----CCCCCCHHHHHHHHHhcCCCCCcEEEEecCCCHHHHHHHHHcCCCE
Confidence 4577888877653 3579988111 12677789999999985 3 57888877777777777777777644
No 246
>3mcm_A 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase/dihydropteroate...; folate, TIM barrel, synthase, HPPK, DHPS; 2.20A {Francisella tularensis subsp} PDB: 3mcn_A* 3mco_A*
Probab=50.51 E-value=17 Score=37.46 Aligned_cols=103 Identities=10% Similarity=0.126 Sum_probs=62.8
Q ss_pred hcCCC-CCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCch----------HHHHHHHHh---h--C
Q 013861 309 LDSNP-RFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPY----------LDVIRLLRD---K--Y 372 (435)
Q Consensus 309 ~~Sap-~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~Y----------LDIIr~vk~---~--~ 372 (435)
+.-+| +|-|-- .+.++|+..++.=++||||||= +=|.--.|+... +.+|+.+++ + +
T Consensus 197 lNvTPDSFsDgg------~~~~~al~~A~~mv~~GAdIID--IGgeSTrPGa~~Vs~~EE~~Rv~pvI~~l~~~~~~~~~ 268 (442)
T 3mcm_A 197 VNLSNQSFSDGN------FDDNQRKLNLDELIQSGAEIID--IGAESTKPDAKPISIEEEFNKLNEFLEYFKSQLANLIY 268 (442)
T ss_dssp EECSSCC-CCCS------SCCCHHHHHHHHHHHHTCSEEE--EECCCCCC----CCHHHHHHHHHHHHHHHHHHTTTCSS
T ss_pred EeCCCCCCCCCC------CCHHHHHHHHHHHHHCCCCEEE--ECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCC
Confidence 56667 466654 2456899999999999999987 233345677554 446778877 3 3
Q ss_pred CCCeEEEEechHHHHHHHHHH--CC--C-C---chhhHHHHHHHHHHHhcccEeehhc
Q 013861 373 PLPIAAYQVSGEYSMIKAGGA--LK--M-I---DEQRVMMESLMCLRRAGADIILTYF 422 (435)
Q Consensus 373 ~lPvaaYqVSGEYaMikaAa~--~G--~-i---de~~~v~Esl~~ikRAGAd~IiTYf 422 (435)
++||..=- =....+++|.+ +| + | ..+ ..-+.+.-+++.||-+|+...
T Consensus 269 ~vpISIDT--~~~~VaeaAL~~~aGa~i~INDVsg~-~d~~m~~v~a~~g~~vVlMh~ 323 (442)
T 3mcm_A 269 KPLVSIDT--RKLEVMQKILAKHHDIIWMINDVECN-NIEQKAQLIAKYNKKYVIIHN 323 (442)
T ss_dssp CCEEEEEC--CCHHHHHHHHHHHGGGCCEEEECCCT-THHHHHHHHHHHTCEEEEECC
T ss_pred CCeEEEeC--CCHHHHHHHHhhCCCCCEEEEcCCCC-CChHHHHHHHHhCCeEEEECC
Confidence 78876532 23455677776 44 4 2 221 123455567788999988553
No 247
>2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A
Probab=50.42 E-value=22 Score=33.61 Aligned_cols=109 Identities=20% Similarity=0.190 Sum_probs=64.6
Q ss_pred CCccccHHHHHHHHHHHHHHHHcCCCeecCCCC--------CCchHHHHHHHHHHCCCCCceeechhhhhcccccccchh
Q 013861 236 DGVIMNDETVHQLCKQAVSQARAGADVVSPSDM--------MDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFRE 307 (435)
Q Consensus 236 ~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDM--------MDGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRd 307 (435)
||.|| -+.++.|+ --+.++|+|-|.+.+. .+=|...+|.+.+..+ . |+.-
T Consensus 13 dg~iD-~~~l~~lv---~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~--g--vi~G-------------- 70 (286)
T 2r91_A 13 GGRLD-PELFANHV---KNITSKGVDVVFVAGTTGLGPALSLQEKMELTDAATSAAR--R--VIVQ-------------- 70 (286)
T ss_dssp TTEEC-HHHHHHHH---HHHHHTTCCEEEETSTTTTGGGSCHHHHHHHHHHHHHHCS--S--EEEE--------------
T ss_pred CCccC-HHHHHHHH---HHHHHCCCCEEEECccccChhhCCHHHHHHHHHHHHHHhC--C--EEEe--------------
Confidence 57776 33444444 3456789998876543 2346777777776653 1 3321
Q ss_pred hhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCccc-CCCc-hHHHHHHHHhhCCCCeEEEEec
Q 013861 308 ALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVK-PGLP-YLDVIRLLRDKYPLPIAAYQVS 382 (435)
Q Consensus 308 A~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VK-Pal~-YLDIIr~vk~~~~lPvaaYqVS 382 (435)
+++ .|.+|++..++.=.+-|||.+|. +--...| |... -.+=.+.+.+.+++||..||+-
T Consensus 71 -vg~--------------~~t~~ai~la~~A~~~Gadavlv-~~P~y~~~~s~~~l~~~f~~va~a~~lPiilYn~P 131 (286)
T 2r91_A 71 -VAS--------------LNADEAIALAKYAESRGAEAVAS-LPPYYFPRLSERQIAKYFRDLCSAVSIPVFLYNYP 131 (286)
T ss_dssp -CCC--------------SSHHHHHHHHHHHHHTTCSEEEE-CCSCSSTTCCHHHHHHHHHHHHHHCSSCEEEEECH
T ss_pred -eCC--------------CCHHHHHHHHHHHHhcCCCEEEE-cCCcCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCh
Confidence 111 25788888777766789999991 1111123 2110 1233346677889999999973
No 248
>3ceu_A Thiamine phosphate pyrophosphorylase; TIM barrel-like protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacteroides thetaiotaomicron vpi-5482}
Probab=50.27 E-value=32 Score=30.66 Aligned_cols=68 Identities=16% Similarity=0.105 Sum_probs=40.8
Q ss_pred CCHHHHHHHHHhcccccccEEeccc-CCCcccCCC---chHHHHHHHHhh--CCCCeEEEEechHHHHHHHHHHCCCCch
Q 013861 326 ANYREALVEAQADESEGADILLFSV-LGSQVKPGL---PYLDVIRLLRDK--YPLPIAAYQVSGEYSMIKAGGALKMIDE 399 (435)
Q Consensus 326 ~N~~EAlre~~~D~~EGADilM~~~-~~~~VKPal---~YLDIIr~vk~~--~~lPvaaYqVSGEYaMikaAa~~G~ide 399 (435)
.|..|+. ++ . .|||+|.|+. +-+.-||+. .=++.++.+++. .++||.+ .|-++.
T Consensus 96 ~t~~e~~-~A---~-~GaDyv~~g~vf~t~sk~~~~~~~g~~~l~~~~~~~~~~iPvia---------------iGGI~~ 155 (210)
T 3ceu_A 96 HSVEEVK-NR---K-HFYDYVFMSPIYDSISKVNYYSTYTAEELREAQKAKIIDSKVMA---------------LGGINE 155 (210)
T ss_dssp CSHHHHH-TT---G-GGSSEEEECCCC---------CCCCHHHHHHHHHTTCSSTTEEE---------------ESSCCT
T ss_pred CCHHHHH-HH---h-hCCCEEEECCcCCCCCCCCCCCCCCHHHHHHHHHhcCCCCCEEE---------------ECCCCH
Confidence 4666643 33 2 6999999764 335567663 247889999987 6899975 566776
Q ss_pred hhHHHHHHHHHHHhcccEe
Q 013861 400 QRVMMESLMCLRRAGADII 418 (435)
Q Consensus 400 ~~~v~Esl~~ikRAGAd~I 418 (435)
+++ ..+.++||+.|
T Consensus 156 ~nv-----~~~~~~Ga~gV 169 (210)
T 3ceu_A 156 DNL-----LEIKDFGFGGA 169 (210)
T ss_dssp TTH-----HHHHHTTCSEE
T ss_pred HHH-----HHHHHhCCCEE
Confidence 543 33446888876
No 249
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=50.25 E-value=3.2e+02 Score=31.21 Aligned_cols=202 Identities=17% Similarity=0.199 Sum_probs=107.6
Q ss_pred eEEEeeCCCCcccCCCCCceeechhhhHHHHHHHHHHc--CCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHH
Q 013861 132 PLFIHEGEEDTPIGAMPGCYRLGWRHGLVQEVAKARDV--GVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDR 209 (435)
Q Consensus 132 PlFV~eg~~~~~I~sMPGv~r~s~~~~l~~~v~~~~~~--GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~ 209 (435)
.+.|.|-.=. -=...++..|++.+ ..++.++.+.+. |+.++-.+|. . .-| .|--..++ +. -..++.|++.
T Consensus 532 ~v~I~DtTlR-DG~Qs~~~~r~~~~-~kl~ia~~L~~~~~G~~~lE~~Gg-a--~~e-~~~~~~~e-~~-~e~l~~l~~~ 603 (1150)
T 3hbl_A 532 DVLLTDTTFR-DAHQSLLATRVRTK-DMINIASKTADVFKDGFSLEMWGG-A--TFD-VAYNFLKE-NP-WERLERLRKA 603 (1150)
T ss_dssp SBEEEECTTT-HHHHHHSTTCCCHH-HHHHHHHHHHHHTTTCSEEEEEET-T--HHH-HHHHTSCC-CH-HHHHHHHHHH
T ss_pred ceEEEECccc-hhhccCCCcCCCHH-HHHHHHHHHHHhhCCCcEEeecCC-c--eEE-ecccccCC-CH-HHHHHHHHHh
Confidence 4667775411 11223455677775 588888888888 9999998874 1 111 12111222 22 2578899999
Q ss_pred CCCeEEEeee---cccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCee----cCCCCCCchHHHHHHHHHH
Q 013861 210 YPDLVIYTDV---ALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVV----SPSDMMDGRVGAIRAALDA 282 (435)
Q Consensus 210 ~Pdl~IitDV---cLc~YTshGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiV----APSDMMDGrVgAIR~aLD~ 282 (435)
.|+..+..=+ .+--|+. + .|.-++.-.+.|. ++|.|+| +-||. +.....++ ...+
T Consensus 604 ~~~~~~~~l~R~~n~vgy~~-----------~--pd~v~~~~v~~a~---~~Gvd~irif~~~sd~-~~~~~~~~-~~~e 665 (1150)
T 3hbl_A 604 IPNVLFQMLLRASNAVGYKN-----------Y--PDNVIHKFVQESA---KAGIDVFRIFDSLNWV-DQMKVANE-AVQE 665 (1150)
T ss_dssp CCSSEEEEEEETTTBTCSSC-----------C--CHHHHHHHHHHHH---HTTCCEEEEECTTCCG-GGGHHHHH-HHHH
T ss_pred CCCCeEEEEecccccccccc-----------C--CchhHHHHHHHHH---hCCcCEEEEEeeCCHH-HHHHHHHH-HHHH
Confidence 9986653221 1222221 1 1222333344443 5799987 44443 33444444 4456
Q ss_pred CCCCCceeechhhhhcccccccchhhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCchH
Q 013861 283 EGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPYL 362 (435)
Q Consensus 283 ~Gf~~v~IMSYSaKyASafYGPFRdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YL 362 (435)
.|..-...++|+.- .++| . | +.. .+.+..+.-+..=++-|||.|-+.---...+|. .+-
T Consensus 666 ~g~~~~~~i~~~~~----~~~p---------e--~--~~~---~~~~~~~~~a~~~~~~Ga~~i~l~Dt~G~~~P~-~~~ 724 (1150)
T 3hbl_A 666 AGKISEGTICYTGD----ILNP---------E--R--SNI---YTLEYYVKLAKELEREGFHILAIKDMAGLLKPK-AAY 724 (1150)
T ss_dssp TTCEEEEEEECCSC----TTCT---------T--T--CSS---SSHHHHHHHHHHHHHTTCSEEEEEETTCCCCHH-HHH
T ss_pred HhhheeEEEeeccc----ccCh---------h--h--cCC---CCHHHHHHHHHHHHHcCCCeeeEcCccCCCCHH-HHH
Confidence 77655555555432 1111 1 1 001 133333333333345799999743322234565 356
Q ss_pred HHHHHHHhhCCCCeEEEEe
Q 013861 363 DVIRLLRDKYPLPIAAYQV 381 (435)
Q Consensus 363 DIIr~vk~~~~lPvaaYqV 381 (435)
++|+.+|+++++|+. +|.
T Consensus 725 ~lv~~l~~~~~~~i~-~H~ 742 (1150)
T 3hbl_A 725 ELIGELKSAVDLPIH-LHT 742 (1150)
T ss_dssp HHHHHHHHHCCSCEE-EEE
T ss_pred HHHHHHHHhcCCeEE-EEe
Confidence 899999999999985 455
No 250
>3l12_A Putative glycerophosphoryl diester phosphodiester; struct genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.60A {Silicibacter pomeroyi}
Probab=50.18 E-value=25 Score=33.26 Aligned_cols=63 Identities=19% Similarity=0.194 Sum_probs=45.8
Q ss_pred cccEEecccCCCcccCCCchHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEeehh
Q 013861 342 GADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTY 421 (435)
Q Consensus 342 GADilM~~~~~~~VKPal~YLDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G~ide~~~v~Esl~~ikRAGAd~IiTY 421 (435)
|+|.+- ..-.+.--+.|+.+++ .+++|.+|-|- .+ |.+..+...|+|.|||-
T Consensus 245 ~~~~~~-------~~~~~~~~~~v~~~~~-~Gl~V~~WTVn----------------~~----~~~~~l~~~GVDgIiTD 296 (313)
T 3l12_A 245 GGQLWC-------PYFLDVTPELVAEAHD-LGLIVLTWTVN----------------EP----EDIRRMATTGVDGIVTD 296 (313)
T ss_dssp TCSEEE-------EBGGGCCHHHHHHHHH-TTCEEEEBCCC----------------SH----HHHHHHHHHTCSEEEES
T ss_pred CCcEEe-------cchhcCCHHHHHHHHH-CCCEEEEEcCC----------------CH----HHHHHHHHcCCCEEEeC
Confidence 588877 3222223578888876 48999999883 32 34555677899999999
Q ss_pred cHHHHHHHHhc
Q 013861 422 FALQAARCLCG 432 (435)
Q Consensus 422 fA~~~a~~L~~ 432 (435)
+-..+.++|.+
T Consensus 297 ~P~~~~~~l~~ 307 (313)
T 3l12_A 297 YPGRTQRILID 307 (313)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHh
Confidence 99888888864
No 251
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1
Probab=50.12 E-value=21 Score=35.94 Aligned_cols=57 Identities=21% Similarity=0.455 Sum_probs=37.4
Q ss_pred ccccccEEecccCCCcccCCC--chHHHHHHHHhhC-CCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcc
Q 013861 339 ESEGADILLFSVLGSQVKPGL--PYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGA 415 (435)
Q Consensus 339 ~~EGADilM~~~~~~~VKPal--~YLDIIr~vk~~~-~lPvaaYqVSGEYaMikaAa~~G~ide~~~v~Esl~~ikRAGA 415 (435)
++.|+|.|.+..- -+. ..+++|+.+|+.+ ++||.+= +..+.+ ....+..+||
T Consensus 246 ~~aGvd~v~i~~~-----~G~~~~~~e~i~~i~~~~p~~pvi~g---------------~~~t~e-----~a~~l~~~G~ 300 (494)
T 1vrd_A 246 VKAGVDVIVIDTA-----HGHSRRVIETLEMIKADYPDLPVVAG---------------NVATPE-----GTEALIKAGA 300 (494)
T ss_dssp HHTTCSEEEECCS-----CCSSHHHHHHHHHHHHHCTTSCEEEE---------------EECSHH-----HHHHHHHTTC
T ss_pred HHhCCCEEEEEec-----CCchHHHHHHHHHHHHHCCCceEEeC---------------CcCCHH-----HHHHHHHcCC
Confidence 4679999984221 122 3789999999999 6998651 122222 2245567899
Q ss_pred cEeeh
Q 013861 416 DIILT 420 (435)
Q Consensus 416 d~IiT 420 (435)
|.|..
T Consensus 301 d~I~v 305 (494)
T 1vrd_A 301 DAVKV 305 (494)
T ss_dssp SEEEE
T ss_pred CEEEE
Confidence 99874
No 252
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=49.96 E-value=59 Score=25.03 Aligned_cols=64 Identities=17% Similarity=0.216 Sum_probs=41.0
Q ss_pred CHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhC---CCCeEEEEechHHHHHHHHHHCCC
Q 013861 327 NYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKY---PLPIAAYQVSGEYSMIKAGGALKM 396 (435)
Q Consensus 327 N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~---~lPvaaYqVSGEYaMikaAa~~G~ 396 (435)
|..||+..... ....|+|+.. . --|.+.=+++++.+|+.. .+|+...--.++......|.+.|.
T Consensus 38 ~~~~a~~~~~~--~~~~dlvi~D---~-~~p~~~g~~~~~~lr~~~~~~~~pii~~s~~~~~~~~~~~~~~g~ 104 (129)
T 3h1g_A 38 HGVEAWEKLDA--NADTKVLITD---W-NMPEMNGLDLVKKVRSDSRFKEIPIIMITAEGGKAEVITALKAGV 104 (129)
T ss_dssp SHHHHHHHHHH--CTTCCEEEEC---S-CCSSSCHHHHHHHHHTSTTCTTCCEEEEESCCSHHHHHHHHHHTC
T ss_pred CHHHHHHHHHh--CCCCCEEEEe---C-CCCCCCHHHHHHHHHhcCCCCCCeEEEEeCCCChHHHHHHHHcCc
Confidence 56677765543 2346888711 1 237777899999999743 689988766555555555555554
No 253
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=49.95 E-value=18 Score=34.86 Aligned_cols=108 Identities=13% Similarity=0.164 Sum_probs=72.1
Q ss_pred cCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCC--------CCchHHHHHHHHHHCCCCCceeechhhhhcccccccc
Q 013861 234 REDGVIMNDETVHQLCKQAVSQARAGADVVSPSDM--------MDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPF 305 (435)
Q Consensus 234 ~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDM--------MDGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPF 305 (435)
++||.|| -+.++.|++ -+.++|+|-|.+.+. .+=|...++.+.+.. .+++|+.=..
T Consensus 21 ~~dg~iD-~~~l~~lv~---~li~~Gv~Gl~v~GtTGE~~~Lt~~Er~~v~~~~v~~~--grvpViaGvg---------- 84 (313)
T 3dz1_A 21 HDDGKID-DVSIDRLTD---FYAEVGCEGVTVLGILGEAPKLDAAEAEAVATRFIKRA--KSMQVIVGVS---------- 84 (313)
T ss_dssp CTTSCBC-HHHHHHHHH---HHHHTTCSEEEESTGGGTGGGSCHHHHHHHHHHHHHHC--TTSEEEEECC----------
T ss_pred CCCCCcC-HHHHHHHHH---HHHHCCCCEEEeCccCcChhhCCHHHHHHHHHHHHHHc--CCCcEEEecC----------
Confidence 3567887 334444443 556799998766542 345677788888777 4788876421
Q ss_pred hhhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCch------HHHHHHHHhhCC--CCeE
Q 013861 306 REALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPY------LDVIRLLRDKYP--LPIA 377 (435)
Q Consensus 306 RdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~Y------LDIIr~vk~~~~--lPva 377 (435)
+ .|.+|++..++.=.+-|||.+| |=|-..+ .+=.+.+.+.++ +||.
T Consensus 85 -----~--------------~~t~~ai~la~~A~~~Gadavl-------v~~P~~~~s~~~l~~~f~~va~a~~~~lPii 138 (313)
T 3dz1_A 85 -----A--------------PGFAAMRRLARLSMDAGAAGVM-------IAPPPSLRTDEQITTYFRQATEAIGDDVPWV 138 (313)
T ss_dssp -----C--------------SSHHHHHHHHHHHHHHTCSEEE-------ECCCTTCCSHHHHHHHHHHHHHHHCTTSCEE
T ss_pred -----C--------------CCHHHHHHHHHHHHHcCCCEEE-------ECCCCCCCCHHHHHHHHHHHHHhCCCCCcEE
Confidence 1 1588888887776678999999 5443311 334456677888 9999
Q ss_pred EEEech
Q 013861 378 AYQVSG 383 (435)
Q Consensus 378 aYqVSG 383 (435)
.||+=|
T Consensus 139 lYn~P~ 144 (313)
T 3dz1_A 139 LQDYPL 144 (313)
T ss_dssp EEECHH
T ss_pred EEeCcc
Confidence 999854
No 254
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=49.88 E-value=85 Score=24.75 Aligned_cols=67 Identities=18% Similarity=0.165 Sum_probs=40.0
Q ss_pred CCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhC-CCCeEEEEechHHHHHHHHHHCCCCc
Q 013861 326 ANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMID 398 (435)
Q Consensus 326 ~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~-~lPvaaYqVSGEYaMikaAa~~G~id 398 (435)
.|..||+..... ....|+|+... . -|.+.-+|+++.+++.. .+|+...--..+-..+..+.+.|..+
T Consensus 36 ~~~~~a~~~l~~--~~~~dlvi~d~---~-l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~ 103 (154)
T 2qsj_A 36 ETVSDALAFLEA--DNTVDLILLDV---N-LPDAEAIDGLVRLKRFDPSNAVALISGETDHELIRAALEAGADG 103 (154)
T ss_dssp SSHHHHHHHHHT--TCCCSEEEECC----------CHHHHHHHHHHCTTSEEEEC-----CHHHHHHHHTTCCB
T ss_pred cCHHHHHHHHhc--cCCCCEEEEeC---C-CCCCchHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHccCCE
Confidence 467777776654 24579998211 1 25666789999999876 58998876666666667777777654
No 255
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=49.79 E-value=23 Score=34.10 Aligned_cols=107 Identities=15% Similarity=0.157 Sum_probs=71.1
Q ss_pred cCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCC--------CCchHHHHHHHHHHCCCCCceeechhhhhcccccccc
Q 013861 234 REDGVIMNDETVHQLCKQAVSQARAGADVVSPSDM--------MDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPF 305 (435)
Q Consensus 234 ~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDM--------MDGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPF 305 (435)
++||.|| -+.++.|++ -+.++|+|-|.+.+. .+=|...++.+.+..+ .+++|+.-..
T Consensus 21 ~~dg~iD-~~~l~~lv~---~li~~Gv~gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~-grvpviaGvg---------- 85 (309)
T 3fkr_A 21 ADTGDLD-LASQKRAVD---FMIDAGSDGLCILANFSEQFAITDDERDVLTRTILEHVA-GRVPVIVTTS---------- 85 (309)
T ss_dssp CTTSSBC-HHHHHHHHH---HHHHTTCSCEEESSGGGTGGGSCHHHHHHHHHHHHHHHT-TSSCEEEECC----------
T ss_pred CcCCCcC-HHHHHHHHH---HHHHcCCCEEEECccccCcccCCHHHHHHHHHHHHHHhC-CCCcEEEecC----------
Confidence 4568887 444555554 466899997766542 3346667777777654 3677775421
Q ss_pred hhhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCch-----------HHHHHHHHhhCCC
Q 013861 306 REALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPY-----------LDVIRLLRDKYPL 374 (435)
Q Consensus 306 RdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~Y-----------LDIIr~vk~~~~l 374 (435)
+ .|.+|++..++.=.+-|||.+| |=|- .| .+=.+.+.+.+++
T Consensus 86 -----~--------------~~t~~ai~la~~A~~~Gadavl-------v~~P-yy~~~~~~s~~~l~~~f~~va~a~~l 138 (309)
T 3fkr_A 86 -----H--------------YSTQVCAARSLRAQQLGAAMVM-------AMPP-YHGATFRVPEAQIFEFYARVSDAIAI 138 (309)
T ss_dssp -----C--------------SSHHHHHHHHHHHHHTTCSEEE-------ECCS-CBTTTBCCCHHHHHHHHHHHHHHCSS
T ss_pred -----C--------------chHHHHHHHHHHHHHcCCCEEE-------EcCC-CCccCCCCCHHHHHHHHHHHHHhcCC
Confidence 1 2688888887777778999999 5442 22 2334566778899
Q ss_pred CeEEEEec
Q 013861 375 PIAAYQVS 382 (435)
Q Consensus 375 PvaaYqVS 382 (435)
||.-||+-
T Consensus 139 PiilYn~P 146 (309)
T 3fkr_A 139 PIMVQDAP 146 (309)
T ss_dssp CEEEEECG
T ss_pred CEEEEeCC
Confidence 99999984
No 256
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=49.74 E-value=22 Score=36.37 Aligned_cols=57 Identities=16% Similarity=0.359 Sum_probs=38.3
Q ss_pred cccccEEecccCCCcccCCCchHHHHHHHHhhC-CCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEe
Q 013861 340 SEGADILLFSVLGSQVKPGLPYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADII 418 (435)
Q Consensus 340 ~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~-~lPvaaYqVSGEYaMikaAa~~G~ide~~~v~Esl~~ikRAGAd~I 418 (435)
+.|+|+|.+..- +-.+ ...+|.|+.+|+++ ++||.+-+|. +. |....+..||||.|
T Consensus 239 ~aG~d~I~id~a--~g~~-~~~~~~v~~i~~~~p~~~Vi~g~v~---------------t~-----e~a~~l~~aGaD~I 295 (490)
T 4avf_A 239 AAGVDVVVVDTA--HGHS-KGVIERVRWVKQTFPDVQVIGGNIA---------------TA-----EAAKALAEAGADAV 295 (490)
T ss_dssp HTTCSEEEEECS--CCSB-HHHHHHHHHHHHHCTTSEEEEEEEC---------------SH-----HHHHHHHHTTCSEE
T ss_pred hcccceEEeccc--CCcc-hhHHHHHHHHHHHCCCceEEEeeeC---------------cH-----HHHHHHHHcCCCEE
Confidence 569999983211 1111 24579999999999 7999996552 11 33456777899988
Q ss_pred e
Q 013861 419 L 419 (435)
Q Consensus 419 i 419 (435)
+
T Consensus 296 ~ 296 (490)
T 4avf_A 296 K 296 (490)
T ss_dssp E
T ss_pred E
Confidence 6
No 257
>2nv1_A Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-barrel, synthase; 2.08A {Bacillus subtilis} PDB: 2nv2_A* 1znn_A
Probab=49.14 E-value=18 Score=34.23 Aligned_cols=48 Identities=15% Similarity=0.258 Sum_probs=25.8
Q ss_pred HHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHC
Q 013861 159 LVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRY 210 (435)
Q Consensus 159 l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~ 210 (435)
..+.++.+.+.|...|..+..+|...+...|+.-.+ ....|+.|++.+
T Consensus 30 ~~~~a~~~~~~Ga~~I~~l~p~~~~~~~~~G~~~~~----~~~~i~~I~~~~ 77 (305)
T 2nv1_A 30 NAEQAKIAEEAGAVAVMALERVPADIRAAGGVARMA----DPTIVEEVMNAV 77 (305)
T ss_dssp SHHHHHHHHHTTCSEEEECCC-------CCCCCCCC----CHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCCEEEEcCCCcchhhhccCcccCC----CHHHHHHHHHhC
Confidence 478888899999999955431232223223322111 246777787765
No 258
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=49.10 E-value=39 Score=26.32 Aligned_cols=51 Identities=12% Similarity=0.112 Sum_probs=36.6
Q ss_pred ccccEEecccCCCccc---CC--CchHHHHHHHHhhC-CCCeEEEEechHHHHHHHHHHCCCCc
Q 013861 341 EGADILLFSVLGSQVK---PG--LPYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMID 398 (435)
Q Consensus 341 EGADilM~~~~~~~VK---Pa--l~YLDIIr~vk~~~-~lPvaaYqVSGEYaMikaAa~~G~id 398 (435)
+.-|+|+ +- |. +.-+++++.+|+.. .+|+...--..+......+.+.|..+
T Consensus 49 ~~~dlvi-------~D~~l~~~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~ 105 (136)
T 3kto_A 49 DDAIGMI-------IEAHLEDKKDSGIELLETLVKRGFHLPTIVMASSSDIPTAVRAMRASAAD 105 (136)
T ss_dssp TTEEEEE-------EETTGGGBTTHHHHHHHHHHHTTCCCCEEEEESSCCHHHHHHHHHTTCSE
T ss_pred cCCCEEE-------EeCcCCCCCccHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHcChHH
Confidence 3478888 44 55 66799999999876 69998877666666666666666543
No 259
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=49.02 E-value=43 Score=31.89 Aligned_cols=164 Identities=15% Similarity=0.161 Sum_probs=91.9
Q ss_pred HHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCc
Q 013861 159 LVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGV 238 (435)
Q Consensus 159 l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTshGHcGIv~e~g~ 238 (435)
..+.++...+.|...+-+- .+ .+--.|+- .-++.+++.+ ++-|+ ..| .
T Consensus 74 p~~~A~~y~~~GA~~isvl---td-~~~f~Gs~---------~~l~~ir~~v-~lPvl-----------------~kd-f 121 (272)
T 3qja_A 74 PAKLAQAYQDGGARIVSVV---TE-QRRFQGSL---------DDLDAVRASV-SIPVL-----------------RKD-F 121 (272)
T ss_dssp HHHHHHHHHHTTCSEEEEE---CC-GGGHHHHH---------HHHHHHHHHC-SSCEE-----------------EES-C
T ss_pred HHHHHHHHHHcCCCEEEEe---cC-hhhcCCCH---------HHHHHHHHhC-CCCEE-----------------ECc-c
Confidence 5777777888999987652 21 11111221 3567777765 33332 112 3
Q ss_pred cccHHHHHHHHHHHHHHHHcCCCeecC--CCCCCchHHHHHHHHHHCCCCCceeechhhhhcccccccchhhhcCCCCCC
Q 013861 239 IMNDETVHQLCKQAVSQARAGADVVSP--SDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFG 316 (435)
Q Consensus 239 IdND~Tv~~Lak~Avs~A~AGADiVAP--SDMMDGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRdA~~Sap~fg 316 (435)
|.|+..++... .+|||.|.- +++-+..+..+.+...+.|.. +.+
T Consensus 122 iid~~qv~~A~-------~~GAD~VlLi~a~l~~~~l~~l~~~a~~lGl~-~lv-------------------------- 167 (272)
T 3qja_A 122 VVQPYQIHEAR-------AHGADMLLLIVAALEQSVLVSMLDRTESLGMT-ALV-------------------------- 167 (272)
T ss_dssp CCSHHHHHHHH-------HTTCSEEEEEGGGSCHHHHHHHHHHHHHTTCE-EEE--------------------------
T ss_pred ccCHHHHHHHH-------HcCCCEEEEecccCCHHHHHHHHHHHHHCCCc-EEE--------------------------
Confidence 34455454322 599999874 444455666666666666652 211
Q ss_pred CccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhC--CCCeEEEEechHHHHHHHHHHC
Q 013861 317 DKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKY--PLPIAAYQVSGEYSMIKAGGAL 394 (435)
Q Consensus 317 DRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~--~lPvaaYqVSGEYaMikaAa~~ 394 (435)
...|.+|+.+.. +.|+|+|-+. +...+.-..-++.+.++++.. ++|+.+ -|
T Consensus 168 -------ev~t~ee~~~A~----~~Gad~IGv~--~r~l~~~~~dl~~~~~l~~~v~~~~pvVa--eg------------ 220 (272)
T 3qja_A 168 -------EVHTEQEADRAL----KAGAKVIGVN--ARDLMTLDVDRDCFARIAPGLPSSVIRIA--ES------------ 220 (272)
T ss_dssp -------EESSHHHHHHHH----HHTCSEEEEE--SBCTTTCCBCTTHHHHHGGGSCTTSEEEE--ES------------
T ss_pred -------EcCCHHHHHHHH----HCCCCEEEEC--CCcccccccCHHHHHHHHHhCcccCEEEE--EC------------
Confidence 124677754443 3599999843 222222223467778888776 688875 33
Q ss_pred CCCchhhHHHHHHHHHHHhcccEeeh
Q 013861 395 KMIDEQRVMMESLMCLRRAGADIILT 420 (435)
Q Consensus 395 G~ide~~~v~Esl~~ikRAGAd~IiT 420 (435)
|.-+. |-+..++++|||.++-
T Consensus 221 GI~t~-----edv~~l~~~GadgvlV 241 (272)
T 3qja_A 221 GVRGT-----ADLLAYAGAGADAVLV 241 (272)
T ss_dssp CCCSH-----HHHHHHHHTTCSEEEE
T ss_pred CCCCH-----HHHHHHHHcCCCEEEE
Confidence 32222 4455677889987764
No 260
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=49.01 E-value=49 Score=25.35 Aligned_cols=65 Identities=17% Similarity=0.130 Sum_probs=41.3
Q ss_pred CHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhC-CCCeEEEEechHHHHHHHHHHCCCCc
Q 013861 327 NYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMID 398 (435)
Q Consensus 327 N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~-~lPvaaYqVSGEYaMikaAa~~G~id 398 (435)
|..||+..... +.-|+|+... --|.+.-+++++.+|+.. .+|+...--..+-.....+.+.|..+
T Consensus 34 ~~~~a~~~~~~---~~~dlii~d~----~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~ 99 (134)
T 3f6c_A 34 EGGSAVQRVET---LKPDIVIIDV----DIPGVNGIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANG 99 (134)
T ss_dssp SSTTHHHHHHH---HCCSEEEEET----TCSSSCHHHHHHHHHHTTCCSEEEEEECC---CTHHHHHHTTCSE
T ss_pred CHHHHHHHHHh---cCCCEEEEec----CCCCCChHHHHHHHHhcCCCCeEEEEeCCCChHHHHHHHHhCCCE
Confidence 44556655443 4689998221 126777899999999876 58988876655555566666666543
No 261
>2oog_A Glycerophosphoryl diester phosphodiesterase; phosphatase, ST genomics, protein structure initiative, PSI; 2.20A {Staphylococcus aureus subsp} PDB: 2p76_A
Probab=48.89 E-value=33 Score=31.97 Aligned_cols=50 Identities=20% Similarity=0.297 Sum_probs=38.0
Q ss_pred HHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEeehhcHHHHHHHHhc
Q 013861 362 LDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTYFALQAARCLCG 432 (435)
Q Consensus 362 LDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G~ide~~~v~Esl~~ikRAGAd~IiTYfA~~~a~~L~~ 432 (435)
-+.|+.+++ .+++|.+|-|-- + |.+..+.+.|+|.|||-+-..+.++|.+
T Consensus 231 ~~~v~~~~~-~G~~v~~wTvn~----------------~----~~~~~l~~~GVdgIiTD~P~~~~~~~~~ 280 (287)
T 2oog_A 231 EQNTHHLKD-LGFIVHPYTVNE----------------K----ADMLRLNKYGVDGVFTNFADKYKEVIKE 280 (287)
T ss_dssp HHHHHHHHH-TTCEECCBCCCS----------------H----HHHHHHHHHTCSEEEESCHHHHHHHHHC
T ss_pred HHHHHHHHH-CCCeEEEEeCCC----------------H----HHHHHHHHcCCCEEEeCCHHHHHHHHhc
Confidence 467777775 689999998832 2 2344566789999999999888888875
No 262
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=48.83 E-value=23 Score=36.44 Aligned_cols=61 Identities=26% Similarity=0.397 Sum_probs=40.5
Q ss_pred HHHHHhcccccccEEecccCCCcccCC----CchHHHHHHHHhhCC-CCeEEEEechHHHHHHHHHHCCCCchhhHHHHH
Q 013861 332 LVEAQADESEGADILLFSVLGSQVKPG----LPYLDVIRLLRDKYP-LPIAAYQVSGEYSMIKAGGALKMIDEQRVMMES 406 (435)
Q Consensus 332 lre~~~D~~EGADilM~~~~~~~VKPa----l~YLDIIr~vk~~~~-lPvaaYqVSGEYaMikaAa~~G~ide~~~v~Es 406 (435)
+..+..=++.|+|+|. |--+ ...+|.|+++|++++ +||.+-+|. + .|.
T Consensus 258 ~era~aLveaGvd~I~-------Id~a~g~~~~v~~~i~~i~~~~~~~~vi~g~v~---------------t-----~e~ 310 (511)
T 3usb_A 258 MTRIDALVKASVDAIV-------LDTAHGHSQGVIDKVKEVRAKYPSLNIIAGNVA---------------T-----AEA 310 (511)
T ss_dssp HHHHHHHHHTTCSEEE-------EECSCTTSHHHHHHHHHHHHHCTTSEEEEEEEC---------------S-----HHH
T ss_pred HHHHHHHHhhccceEE-------ecccccchhhhhhHHHHHHHhCCCceEEeeeec---------------c-----HHH
Confidence 3333333467999999 4222 235799999999985 899986663 1 233
Q ss_pred HHHHHHhcccEee
Q 013861 407 LMCLRRAGADIIL 419 (435)
Q Consensus 407 l~~ikRAGAd~Ii 419 (435)
...+..||||.|+
T Consensus 311 a~~~~~aGad~i~ 323 (511)
T 3usb_A 311 TKALIEAGANVVK 323 (511)
T ss_dssp HHHHHHHTCSEEE
T ss_pred HHHHHHhCCCEEE
Confidence 4455667888885
No 263
>3i7m_A XAA-Pro dipeptidase; structural genomics, APC64794.2, metall peptidase, creatinase/prolidase N-terminal domain, PSI-2; HET: MSE; 1.46A {Lactobacillus brevis}
Probab=48.73 E-value=11 Score=31.12 Aligned_cols=36 Identities=11% Similarity=0.111 Sum_probs=23.8
Q ss_pred CCCCchHHHHHHHHHHCCCCCceeechh-hhhcccccc
Q 013861 267 DMMDGRVGAIRAALDAEGFQHVSIMSYT-AKYASSFYG 303 (435)
Q Consensus 267 DMMDGrVgAIR~aLD~~Gf~~v~IMSYS-aKyASafYG 303 (435)
+||+ |+..+|+.|.++|..-+-|.+-. -.|-|.|.|
T Consensus 1 ~~m~-Rl~~l~~~m~~~glDa~li~~~~ni~YlTGf~~ 37 (140)
T 3i7m_A 1 GHMT-KLEQIQQWTAQHHASMTYLSNPKTIEYLTGFGS 37 (140)
T ss_dssp ---C-HHHHHHHHHHHTTCSEEEECCHHHHHHHHCCCC
T ss_pred Ccch-HHHHHHHHHHHcCCCEEEECCCCcceeecCCCC
Confidence 4788 99999999999998555554422 236666664
No 264
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=48.52 E-value=46 Score=26.44 Aligned_cols=65 Identities=22% Similarity=0.218 Sum_probs=44.3
Q ss_pred CHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhC-CCCeEEEEechHHHHHHHHHHCCCCc
Q 013861 327 NYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMID 398 (435)
Q Consensus 327 N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~-~lPvaaYqVSGEYaMikaAa~~G~id 398 (435)
|..||+.... +...|+|+... --|.+.-+++++.+++.. .+|+..+--+.+-.....+.+.|..+
T Consensus 35 ~~~~a~~~l~---~~~~dliild~----~l~~~~g~~~~~~l~~~~~~~pii~ls~~~~~~~~~~~~~~g~~~ 100 (155)
T 1qkk_A 35 SATEALAGLS---ADFAGIVISDI----RMPGMDGLALFRKILALDPDLPMILVTGHGDIPMAVQAIQDGAYD 100 (155)
T ss_dssp CHHHHHHTCC---TTCCSEEEEES----CCSSSCHHHHHHHHHHHCTTSCEEEEECGGGHHHHHHHHHTTCCE
T ss_pred CHHHHHHHHH---hCCCCEEEEeC----CCCCCCHHHHHHHHHhhCCCCCEEEEECCCChHHHHHHHhcCCCe
Confidence 4445544332 24578888211 125667789999999876 69999988777777777778887754
No 265
>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*
Probab=48.40 E-value=12 Score=35.59 Aligned_cols=108 Identities=21% Similarity=0.309 Sum_probs=69.7
Q ss_pred cCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCC------C--CchHHHHHHHHHHCCCCCceeechhhhhcccccccc
Q 013861 234 REDGVIMNDETVHQLCKQAVSQARAGADVVSPSDM------M--DGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPF 305 (435)
Q Consensus 234 ~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDM------M--DGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPF 305 (435)
++|| || -+.++.|++ -+.++|+|-+.+.+. | +=|...++.+.+..+ .+++|+.-..
T Consensus 15 ~~dg-iD-~~~l~~lv~---~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~-gr~pvi~Gvg---------- 78 (291)
T 3a5f_A 15 TNTG-VD-FDKLSELIE---WHIKSKTDAIIVCGTTGEATTMTETERKETIKFVIDKVN-KRIPVIAGTG---------- 78 (291)
T ss_dssp CSSS-BC-HHHHHHHHH---HHHHTTCCEEEESSGGGTGGGSCHHHHHHHHHHHHHHHT-TSSCEEEECC----------
T ss_pred CCCC-cC-HHHHHHHHH---HHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhC-CCCcEEEeCC----------
Confidence 3567 65 445555544 456789998876542 2 347788888887654 3677775422
Q ss_pred hhhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCch----HHHH---HHHHhhCCCCeEE
Q 013861 306 REALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPY----LDVI---RLLRDKYPLPIAA 378 (435)
Q Consensus 306 RdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~Y----LDII---r~vk~~~~lPvaa 378 (435)
+ .|.+|+++.++.=.+-|||.+| |=|-..| =.++ +.+.+.+++||..
T Consensus 79 -----~--------------~~t~~ai~la~~a~~~Gadavl-------v~~P~y~~~s~~~l~~~f~~ia~a~~lPiil 132 (291)
T 3a5f_A 79 -----S--------------NNTAASIAMSKWAESIGVDGLL-------VITPYYNKTTQKGLVKHFKAVSDAVSTPIII 132 (291)
T ss_dssp -----C--------------SSHHHHHHHHHHHHHTTCSEEE-------EECCCSSCCCHHHHHHHC-CTGGGCCSCEEE
T ss_pred -----c--------------ccHHHHHHHHHHHHhcCCCEEE-------EcCCCCCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 1 2568888887776678999999 5443211 2344 3556778999999
Q ss_pred EEech
Q 013861 379 YQVSG 383 (435)
Q Consensus 379 YqVSG 383 (435)
||+-+
T Consensus 133 Yn~P~ 137 (291)
T 3a5f_A 133 YNVPG 137 (291)
T ss_dssp EECHH
T ss_pred EeCcc
Confidence 99744
No 266
>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A*
Probab=48.37 E-value=35 Score=32.65 Aligned_cols=38 Identities=21% Similarity=0.435 Sum_probs=26.3
Q ss_pred cccccEEecccC--CCcccCCCchHHHHHHHHhhCCCCeEE
Q 013861 340 SEGADILLFSVL--GSQVKPGLPYLDVIRLLRDKYPLPIAA 378 (435)
Q Consensus 340 ~EGADilM~~~~--~~~VKPal~YLDIIr~vk~~~~lPvaa 378 (435)
+.|+|+|.++.. |... ...+-+++++++++..++||.+
T Consensus 128 ~~GaD~i~v~g~~~GG~~-g~~~~~~ll~~i~~~~~iPVia 167 (332)
T 2z6i_A 128 KIGADAVIAEGMEAGGHI-GKLTTMTLVRQVATAISIPVIA 167 (332)
T ss_dssp HTTCSCEEEECTTSSEEC-CSSCHHHHHHHHHHHCSSCEEE
T ss_pred HcCCCEEEEECCCCCCCC-CCccHHHHHHHHHHhcCCCEEE
Confidence 579999995321 1110 1245679999999999999875
No 267
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=48.34 E-value=1.2e+02 Score=31.02 Aligned_cols=68 Identities=29% Similarity=0.394 Sum_probs=45.9
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCC
Q 013861 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDG 237 (435)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTshGHcGIv~e~g 237 (435)
...+.++.+++.|+..|.| .. .. | + ...+...|+.+|+.+|++.|+. |-
T Consensus 229 ~~~~~a~~l~~aG~d~I~i-d~-a~------g----~-~~~~~~~v~~i~~~~p~~~Vi~-------------g~----- 277 (490)
T 4avf_A 229 DTGERVAALVAAGVDVVVV-DT-AH------G----H-SKGVIERVRWVKQTFPDVQVIG-------------GN----- 277 (490)
T ss_dssp THHHHHHHHHHTTCSEEEE-EC-SC------C----S-BHHHHHHHHHHHHHCTTSEEEE-------------EE-----
T ss_pred chHHHHHHHhhcccceEEe-cc-cC------C----c-chhHHHHHHHHHHHCCCceEEE-------------ee-----
Confidence 4688999999999997665 21 11 1 1 1245579999999999976665 11
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCeec
Q 013861 238 VIMNDETVHQLCKQAVSQARAGADVVS 264 (435)
Q Consensus 238 ~IdND~Tv~~Lak~Avs~A~AGADiVA 264 (435)
+.+- +.|....++|||.|.
T Consensus 278 -v~t~-------e~a~~l~~aGaD~I~ 296 (490)
T 4avf_A 278 -IATA-------EAAKALAEAGADAVK 296 (490)
T ss_dssp -ECSH-------HHHHHHHHTTCSEEE
T ss_pred -eCcH-------HHHHHHHHcCCCEEE
Confidence 1111 246667889999886
No 268
>4h17_A Hydrolase, isochorismatase family; rossmann-like fold, structural genomics, joint center for ST genomics, JCSG; 1.60A {Pseudomonas putida KT2440}
Probab=48.19 E-value=32 Score=30.74 Aligned_cols=78 Identities=14% Similarity=0.123 Sum_probs=48.4
Q ss_pred HHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCccccHHHH
Q 013861 166 ARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETV 245 (435)
Q Consensus 166 ~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTshGHcGIv~e~g~IdND~Tv 245 (435)
|.+.||+.++|-|.-.+ .-|..+.+-..+.-=+++|+.|-|- .++...|+|.+. ..-..+.++
T Consensus 118 L~~~gi~~lvi~G~~T~--------------~CV~~Ta~da~~~Gy~V~vv~Da~a-s~~~~~~~~~~~--a~~~h~~aL 180 (197)
T 4h17_A 118 LQELGHLDLIVCGFMSH--------------SSVSTTVRRAKDYGYRCTLVEDASA-TRDLAFKDGVIP--AAQIHQCEM 180 (197)
T ss_dssp HHHHTCSEEEEEEECTT--------------THHHHHHHHHHHTTCEEEEEEEEEE-CCCEEETTEEEC--HHHHHHHHH
T ss_pred HHhcCCCEEEEEeeCcC--------------HHHHHHHHHHHHCCCEEEEeCcccc-ccCcccccCCCC--HHHHHHHHH
Confidence 45679999999997322 4555666666666568999999875 455556777552 222233333
Q ss_pred HHHHHHHHHHHHcCCCeecCCC
Q 013861 246 HQLCKQAVSQARAGADVVSPSD 267 (435)
Q Consensus 246 ~~Lak~Avs~A~AGADiVAPSD 267 (435)
..| +..+|+|+.-.+
T Consensus 181 ~~l-------~~~~a~V~tt~e 195 (197)
T 4h17_A 181 AVM-------ADNFACVAPTAS 195 (197)
T ss_dssp HHH-------HHHTCEEECGGG
T ss_pred HHH-------HhcceEEeEHHH
Confidence 332 335788776444
No 269
>3oa3_A Aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, pathogenic fungus; 1.60A {Coccidioides immitis}
Probab=47.82 E-value=98 Score=30.30 Aligned_cols=186 Identities=16% Similarity=0.177 Sum_probs=96.4
Q ss_pred cCcchhhhhhhhhcc--CC--CCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCChHHHhhhhcCC-CC-CCCceeeEEE
Q 013861 62 LGISDAECEAAVVAG--NI--PEAPPVPPKPAAPAGTPVVPSLPLSRRPRRNRKSPAMRASFQETN-LS-PANFVYPLFI 135 (435)
Q Consensus 62 ~~~~~~~~~a~~~~~--~~--~~~~~~p~~~~~p~g~p~~~~l~~~~R~RRlR~~~~~R~l~~Et~-L~-~~~LI~PlFV 135 (435)
..+|.+|..+.+-.- +. |..-+..|+|...+ +.+-||... +.-.-....++++++|-. .. .+=.|+|-||
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---la~~IDhTl-L~p~~T~~dI~~lc~eA~~~g~aaVCV~P~~V 98 (288)
T 3oa3_A 23 SSLNNEEWDLLISGKKATLQYPIPLLCYPAPEVVS---IAQIIDHTQ-LSLSATGSQIDVLCAEAKEYGFATVCVRPDYV 98 (288)
T ss_dssp TTCCHHHHHHHHHHHHTTSCSSCCCSCSCCCCGGG---GGGGEEEEC-CCTTCCHHHHHHHHHHHHHHTCSEEEECGGGH
T ss_pred CCCCcHHHHHHHHHHHHhcCCccccccCCCCCHHH---HHHhcCccc-CCCCCCHHHHHHHHHHHHhcCCcEEEECHHHH
Confidence 456667776654321 11 22233333332111 455555433 444445567888877732 11 1224556555
Q ss_pred eeC---C-C-Cccc---CCCCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHH
Q 013861 136 HEG---E-E-DTPI---GAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLK 207 (435)
Q Consensus 136 ~eg---~-~-~~~I---~sMPGv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK 207 (435)
..- . + ...| -..|.=.. .. ..-+.|++++++.|-.-|-+--.+. ..|+. +...+.+-|+.++
T Consensus 99 ~~a~~~L~~s~V~V~tVigFP~G~~-~~-~~Kv~Ea~~Ai~~GAdEIDmVINig-~lk~g-------~~~~v~~eI~~V~ 168 (288)
T 3oa3_A 99 SRAVQYLQGTQVGVTCVIGFHEGTY-ST-DQKVSEAKRAMQNGASELDMVMNYP-WLSEK-------RYTDVFQDIRAVR 168 (288)
T ss_dssp HHHHHHTTTSSCEEEEEESTTTSCS-CH-HHHHHHHHHHHHTTCSEEEEECCHH-HHHTT-------CHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCeEEEEeCCCCCCC-cH-HHHHHHHHHHHHcCCCEEEEEeehh-hhcCC-------cHHHHHHHHHHHH
Confidence 321 1 1 1222 23443211 22 2368899999999999988732221 12322 2245777888888
Q ss_pred HHCCC--eEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCC--Cc----hHHHHHHH
Q 013861 208 DRYPD--LVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMM--DG----RVGAIRAA 279 (435)
Q Consensus 208 ~~~Pd--l~IitDVcLc~YTshGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMM--DG----rVgAIR~a 279 (435)
+..++ |-||- |.+.+ +|+-+...|+.| +++|||+|=.|-=. -| -|.-+|+.
T Consensus 169 ~a~~~~~lKVIl-----------------Et~~L-t~eei~~A~~ia---~eaGADfVKTSTGf~~~GAT~edv~lmr~~ 227 (288)
T 3oa3_A 169 LAAKDAILKVIL-----------------ETSQL-TADEIIAGCVLS---SLAGADYVKTSTGFNGPGASIENVSLMSAV 227 (288)
T ss_dssp HHTTTSEEEEEC-----------------CGGGC-CHHHHHHHHHHH---HHTTCSEEECCCSSSSCCCCHHHHHHHHHH
T ss_pred HHhcCCCceEEE-----------------ECCCC-CHHHHHHHHHHH---HHcCCCEEEcCCCCCCCCCCHHHHHHHHHH
Confidence 87644 33333 44444 355455555554 58999999998211 12 45556666
Q ss_pred HHH
Q 013861 280 LDA 282 (435)
Q Consensus 280 LD~ 282 (435)
.+.
T Consensus 228 v~~ 230 (288)
T 3oa3_A 228 CDS 230 (288)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 270
>1s2w_A Phosphoenolpyruvate phosphomutase; phosphonopyruvate, phosphonate biosynthesis pathway, isomera; 1.69A {Mytilus edulis} SCOP: c.1.12.7 PDB: 1m1b_A 1s2t_A 1s2v_A 1pym_A 1s2u_A
Probab=47.60 E-value=1.9e+02 Score=27.98 Aligned_cols=104 Identities=24% Similarity=0.221 Sum_probs=62.6
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCc-----CcCCCCCHHHHHHHHHHHC--CCeEEEeeecccCCCCCCcc
Q 013861 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDE-----AYNDNGLVPRTIWLLKDRY--PDLVIYTDVALDPYSSDGHD 230 (435)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~-----A~~~~g~v~raIr~iK~~~--Pdl~IitDVcLc~YTshGHc 230 (435)
.+.+.++++.+.|+..|.|=+-+.. .| +|-- ..-|-.-...-|+++++.. ++.+|++=. |.+. .|
T Consensus 95 ~v~~~v~~l~~aGaagv~iED~~~~-k~--cgH~gg~~k~l~p~~e~~~rI~Aa~~a~~~~~~~i~aRt--da~~-a~-- 166 (295)
T 1s2w_A 95 NARRLVRKLEDRGVAGACLEDKLFP-KT--NSLHDGRAQPLADIEEFALKIKACKDSQTDPDFCIVARV--EAFI-AG-- 166 (295)
T ss_dssp HHHHHHHHHHHTTCCEEEEECBCC-----------CTTCCBCCHHHHHHHHHHHHHHCSSTTCEEEEEE--CTTT-TT--
T ss_pred HHHHHHHHHHHcCCcEEEECCCCCC-cc--ccccCCCCCcccCHHHHHHHHHHHHHhcccCCcEEEEee--hHHh-cc--
Confidence 5888999999999999998554311 11 1111 1111112234466666654 666666532 1110 01
Q ss_pred eeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCC-CCC-chHHHHHHHHH
Q 013861 231 GIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSD-MMD-GRVGAIRAALD 281 (435)
Q Consensus 231 GIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSD-MMD-GrVgAIR~aLD 281 (435)
..++.+.+-|..+++||||+|-+-. +-| -.+..|.++|+
T Consensus 167 ------------~g~~~ai~Ra~ay~eAGAd~i~~e~~~~~~~~~~~i~~~~~ 207 (295)
T 1s2w_A 167 ------------WGLDEALKRAEAYRNAGADAILMHSKKADPSDIEAFMKAWN 207 (295)
T ss_dssp ------------CCHHHHHHHHHHHHHTTCSEEEECCCSSSSHHHHHHHHHHT
T ss_pred ------------ccHHHHHHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHcC
Confidence 1267778889999999999998754 553 56777888874
No 271
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=47.60 E-value=58 Score=24.29 Aligned_cols=62 Identities=8% Similarity=0.062 Sum_probs=40.0
Q ss_pred CHHHHHHHHHhcccccccEEecccCCCcccC-CCchHHHHHHHHhh---CCCCeEEEEechHHHHHHHHHHCCC
Q 013861 327 NYREALVEAQADESEGADILLFSVLGSQVKP-GLPYLDVIRLLRDK---YPLPIAAYQVSGEYSMIKAGGALKM 396 (435)
Q Consensus 327 N~~EAlre~~~D~~EGADilM~~~~~~~VKP-al~YLDIIr~vk~~---~~lPvaaYqVSGEYaMikaAa~~G~ 396 (435)
|..||+..... +..|+++.. .. -| .+.-+++++.+|+. ..+|+... -+.+-.....+.+.|.
T Consensus 37 ~~~~a~~~~~~---~~~dlvi~d---~~-~~~~~~g~~~~~~l~~~~~~~~~~ii~~-~~~~~~~~~~~~~~g~ 102 (127)
T 2gkg_A 37 DGKGSVEQIRR---DRPDLVVLA---VD-LSAGQNGYLICGKLKKDDDLKNVPIVII-GNPDGFAQHRKLKAHA 102 (127)
T ss_dssp CHHHHHHHHHH---HCCSEEEEE---SB-CGGGCBHHHHHHHHHHSTTTTTSCEEEE-ECGGGHHHHHHSTTCC
T ss_pred CHHHHHHHHHh---cCCCEEEEe---CC-CCCCCCHHHHHHHHhcCccccCCCEEEE-ecCCchhHHHHHHhCc
Confidence 56677665543 357998821 11 23 55678999999986 46999998 6655555555555554
No 272
>1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp}
Probab=47.50 E-value=41 Score=32.42 Aligned_cols=87 Identities=18% Similarity=0.104 Sum_probs=48.9
Q ss_pred ccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcc----cCCCc-------hHHHHHHHHhhCCCCeEEE---Eech
Q 013861 318 KKTYQMNPANYREALVEAQADESEGADILLFSVLGSQV----KPGLP-------YLDVIRLLRDKYPLPIAAY---QVSG 383 (435)
Q Consensus 318 RktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~V----KPal~-------YLDIIr~vk~~~~lPvaaY---qVSG 383 (435)
...|++-..|.+. ++.+ ++-|+|.|.+..--|.. |=... ..++|+.+|+. .+.|-+| .++.
T Consensus 74 ~~~~~~l~~~~~~-i~~a---~~~g~~~v~i~~~~sd~~~~~~l~~s~~e~l~~~~~~v~~ak~~-G~~v~~~i~~~~~~ 148 (307)
T 1ydo_A 74 GVTYAALVPNQRG-LENA---LEGGINEACVFMSASETHNRKNINKSTSESLHILKQVNNDAQKA-NLTTRAYLSTVFGC 148 (307)
T ss_dssp TCEEEEECCSHHH-HHHH---HHHTCSEEEEEEESSHHHHHTTTCSCHHHHHHHHHHHHHHHHHT-TCEEEEEEECTTCB
T ss_pred CCeEEEEeCCHHh-HHHH---HhCCcCEEEEEeecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHC-CCEEEEEEEEEecC
Confidence 3456654457554 3322 23589988722211110 00111 25667777763 5555433 4556
Q ss_pred HHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEe
Q 013861 384 EYSMIKAGGALKMIDEQRVMMESLMCLRRAGADII 418 (435)
Q Consensus 384 EYaMikaAa~~G~ide~~~v~Esl~~ikRAGAd~I 418 (435)
||. |-.|. +.++|....+..+|||.|
T Consensus 149 ~~~--------~~~~~-~~~~~~~~~~~~~Ga~~i 174 (307)
T 1ydo_A 149 PYE--------KDVPI-EQVIRLSEALFEFGISEL 174 (307)
T ss_dssp TTT--------BCCCH-HHHHHHHHHHHHHTCSCE
T ss_pred CcC--------CCCCH-HHHHHHHHHHHhcCCCEE
Confidence 663 44555 477999999999999986
No 273
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=47.49 E-value=1.2e+02 Score=26.54 Aligned_cols=78 Identities=23% Similarity=0.213 Sum_probs=54.7
Q ss_pred CHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhC-CCCeEEEEechHHHHHHHHHHCCCCch------
Q 013861 327 NYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMIDE------ 399 (435)
Q Consensus 327 N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~-~lPvaaYqVSGEYaMikaAa~~G~ide------ 399 (435)
|..||+..... +..|+|+... -=|.+.=+++++.+|+.. .+||...--..+-..+..|.+.|..|.
T Consensus 55 ~~~~al~~~~~---~~~dlvllD~----~lp~~~g~~~~~~lr~~~~~~~ii~lt~~~~~~~~~~~~~~Ga~~yl~Kp~~ 127 (250)
T 3r0j_A 55 NGAQALDRARE---TRPDAVILDV----XMPGMDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFS 127 (250)
T ss_dssp SHHHHHHHHHH---HCCSEEEEES----CCSSSCHHHHHHHHHHTTCCCCEEEEECSTTHHHHHHHHTSTTCEEEESSCC
T ss_pred CHHHHHHHHHh---CCCCEEEEeC----CCCCCCHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHcCCcEEEeCCCC
Confidence 56677766543 4589988211 127777899999999875 699999888888888888888887653
Q ss_pred hhHHHHHHHHHH
Q 013861 400 QRVMMESLMCLR 411 (435)
Q Consensus 400 ~~~v~Esl~~ik 411 (435)
.+.+.+.+..+.
T Consensus 128 ~~~L~~~i~~~~ 139 (250)
T 3r0j_A 128 LEEVVARLRVIL 139 (250)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 234555555543
No 274
>1vcv_A Probable deoxyribose-phosphate aldolase; DERA, hyperthermophIle, archaea, lyase; 2.00A {Pyrobaculum aerophilum} SCOP: c.1.10.1
Probab=47.49 E-value=76 Score=29.74 Aligned_cols=132 Identities=12% Similarity=0.063 Sum_probs=73.4
Q ss_pred cccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCCCceeechhhhhcccccccchhhhcCCCCCCCc
Q 013861 239 IMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDK 318 (435)
Q Consensus 239 IdND~Tv~~Lak~Avs~A~AGADiVAPSDMMDGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRdA~~Sap~fgDR 318 (435)
.+.++.++.||+.|.. .||.-|.|-.+-.+++..++..-+=+.-....+|+
T Consensus 13 ~~t~~~i~~l~~~A~~----------------------------~~~~aVcv~p~~v~~a~~~l~gv~v~tvigFP~G~- 63 (226)
T 1vcv_A 13 YLTVDEAVAGARKAEE----------------------------LGVAAYCVNPIYAPVVRPLLRKVKLCVVADFPFGA- 63 (226)
T ss_dssp TCCHHHHHHHHHHHHH----------------------------HTCSEEEECGGGHHHHGGGCSSSEEEEEESTTTCC-
T ss_pred CCCHHHHHHHHHHHHH----------------------------hCCCEEEECHHHHHHHHHHhCCCeEEEEeCCCCCC-
Confidence 3467778888888876 35555666665566555544321111111111242
Q ss_pred cccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCch---HHHHHHHHhhC---CCCeEEEEechHHHHHHHHH
Q 013861 319 KTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPY---LDVIRLLRDKY---PLPIAAYQVSGEYSMIKAGG 392 (435)
Q Consensus 319 ktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~Y---LDIIr~vk~~~---~lPvaaYqVSGEYaMikaAa 392 (435)
.+...-+.|++. ++.|||-|-+-.--..+|-+ -| ++=|+.+++.. .+||. .
T Consensus 64 -------~~~~~k~~E~~~-i~~GAdEID~Vinig~~~~g-~~~~v~~ei~~v~~a~~~~~lKvI--------------l 120 (226)
T 1vcv_A 64 -------LPTASRIALVSR-LAEVADEIDVVAPIGLVKSR-RWAEVRRDLISVVGAAGGRVVKVI--------------T 120 (226)
T ss_dssp -------SCHHHHHHHHHH-HTTTCSEEEEECCHHHHHTT-CHHHHHHHHHHHHHHTTTSEEEEE--------------C
T ss_pred -------CchHHHHHHHHH-HHCCCCEEEEecchhhhcCC-CHHHHHHHHHHHHHHHcCCCceEE--------------E
Confidence 366667889999 99999977411111112222 23 33344455543 24432 2
Q ss_pred HCCCCchhhHHHHHHHHHHHhcccEeehh--cH
Q 013861 393 ALKMIDEQRVMMESLMCLRRAGADIILTY--FA 423 (435)
Q Consensus 393 ~~G~ide~~~v~Esl~~ikRAGAd~IiTY--fA 423 (435)
+.+++..++ +...-.....||||+|=|. |.
T Consensus 121 Et~~Lt~ee-i~~a~~ia~eaGADfVKTSTGf~ 152 (226)
T 1vcv_A 121 EEPYLRDEE-RYTLYDIIAEAGAHFIKSSTGFA 152 (226)
T ss_dssp CGGGCCHHH-HHHHHHHHHHHTCSEEECCCSCC
T ss_pred eccCCCHHH-HHHHHHHHHHcCCCEEEeCCCCC
Confidence 555666554 4555566678999999998 75
No 275
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=47.40 E-value=48 Score=25.76 Aligned_cols=62 Identities=13% Similarity=0.142 Sum_probs=40.0
Q ss_pred CHHHHHHHHHhcccccccEEecccCCCcccC----CCchHHHHHHHHh--hC-CCCeEEEEechHHHHHHHHHHCCCC
Q 013861 327 NYREALVEAQADESEGADILLFSVLGSQVKP----GLPYLDVIRLLRD--KY-PLPIAAYQVSGEYSMIKAGGALKMI 397 (435)
Q Consensus 327 N~~EAlre~~~D~~EGADilM~~~~~~~VKP----al~YLDIIr~vk~--~~-~lPvaaYqVSGEYaMikaAa~~G~i 397 (435)
|..||+...... +.-|+|+ +-- .+.-+++++.+|+ .. .+|+...--..+-..+..+.+.|..
T Consensus 37 ~~~~a~~~l~~~--~~~dlvi-------~D~~l~~~~~g~~~~~~l~~~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~ 105 (140)
T 3lua_A 37 NLKKFYSIFKDL--DSITLII-------MDIAFPVEKEGLEVLSAIRNNSRTANTPVIIATKSDNPGYRHAALKFKVS 105 (140)
T ss_dssp SHHHHHTTTTTC--CCCSEEE-------ECSCSSSHHHHHHHHHHHHHSGGGTTCCEEEEESCCCHHHHHHHHHSCCS
T ss_pred CHHHHHHHHhcC--CCCcEEE-------EeCCCCCCCcHHHHHHHHHhCcccCCCCEEEEeCCCCHHHHHHHHHcCCC
Confidence 455555443321 4578998 554 4447899999998 44 6999988765555555556666643
No 276
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=47.25 E-value=61 Score=25.00 Aligned_cols=66 Identities=12% Similarity=0.073 Sum_probs=43.8
Q ss_pred CCHHHHHHHHHhccc--ccccEEecccCCCcccCCCchHHHHHHHHh----h-CCCCeEEEEechHHHHHHHHHHCC
Q 013861 326 ANYREALVEAQADES--EGADILLFSVLGSQVKPGLPYLDVIRLLRD----K-YPLPIAAYQVSGEYSMIKAGGALK 395 (435)
Q Consensus 326 ~N~~EAlre~~~D~~--EGADilM~~~~~~~VKPal~YLDIIr~vk~----~-~~lPvaaYqVSGEYaMikaAa~~G 395 (435)
.|..||+........ +.-|+|+... --|.+.=+++++.+|+ . ..+|+...--+.+......+...|
T Consensus 42 ~~~~~a~~~l~~~~~~~~~~dlvi~D~----~l~~~~g~~~~~~l~~~~~~~~~~~~ii~~t~~~~~~~~~~~~~~g 114 (146)
T 3ilh_A 42 TSGNAAINKLNELYAAGRWPSIICIDI----NMPGINGWELIDLFKQHFQPMKNKSIVCLLSSSLDPRDQAKAEASD 114 (146)
T ss_dssp SSHHHHHHHHHHHHTSSCCCSEEEEES----SCSSSCHHHHHHHHHHHCGGGTTTCEEEEECSSCCHHHHHHHHHCS
T ss_pred CCHHHHHHHHHHhhccCCCCCEEEEcC----CCCCCCHHHHHHHHHHhhhhccCCCeEEEEeCCCChHHHHHHHhcC
Confidence 467788776654222 4579998211 1367778999999998 3 368888776555556666666666
No 277
>3ks6_A Glycerophosphoryl diester phosphodiesterase; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.80A {Agrobacterium tumefaciens str} PDB: 3ks5_A*
Probab=47.09 E-value=31 Score=31.60 Aligned_cols=122 Identities=11% Similarity=0.135 Sum_probs=69.5
Q ss_pred CchHHHHHHHHHHCCC-CCceeechhhhhcccccccchhhhcCCCCCCCccccCCCCC-----CHHHHHHHHHhcccccc
Q 013861 270 DGRVGAIRAALDAEGF-QHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPA-----NYREALVEAQADESEGA 343 (435)
Q Consensus 270 DGrVgAIR~aLD~~Gf-~~v~IMSYSaKyASafYGPFRdA~~Sap~fgDRktYQmdp~-----N~~EAlre~~~D~~EGA 343 (435)
.+-+..+-+.|.+.|+ .++.|.||....-- -+|+. .|.. + ++.+... +..+ +.+.. -.-|+
T Consensus 116 ~~~~~~v~~~l~~~~~~~~v~~~SF~~~~l~----~~~~~---~p~~--~-~~l~~~~~~~~~~~~~-~~~~~--~~~~~ 182 (250)
T 3ks6_A 116 EGFVALVIAGLERHSMLERTTFSSFLLASMD----ELWKA---TTRP--R-LWLVSPSVLQQLGPGA-VIETA--IAHSI 182 (250)
T ss_dssp TTHHHHHHHHHHHTTCGGGEEEEESCHHHHH----HHHHH---CCSC--E-EEEECHHHHHHHHHHH-HHHHH--HHTTC
T ss_pred hHHHHHHHHHHHhcCCCCCEEEEeCCHHHHH----HHHHH---CCCC--c-EEEEecccccccchhH-HHHHH--HhcCC
Confidence 3667778888888877 45666666443211 12222 2321 1 1111110 0011 11111 13578
Q ss_pred cEEecccCCCcccCCCchHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEeehhcH
Q 013861 344 DILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTYFA 423 (435)
Q Consensus 344 DilM~~~~~~~VKPal~YLDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G~ide~~~v~Esl~~ikRAGAd~IiTYfA 423 (435)
|.+- ..-...--+.|+.+++ .+++|.+|-| |.. |.+..+...|+|.|||-+-
T Consensus 183 ~~~~-------~~~~~~~~~~v~~~~~-~G~~V~~WTv----------------n~~----~~~~~l~~~GVDgIiTD~P 234 (250)
T 3ks6_A 183 HEIG-------VHIDTADAGLMAQVQA-AGLDFGCWAA----------------HTP----SQITKALDLGVKVFTTDRP 234 (250)
T ss_dssp CEEE-------EEGGGCCHHHHHHHHH-TTCEEEEECC----------------CSH----HHHHHHHHHTCSEEEESCH
T ss_pred CEEe-------cchhhCCHHHHHHHHH-CCCEEEEEeC----------------CCH----HHHHHHHHcCCCEEEcCCH
Confidence 8776 3222233477888775 5899999977 332 3455667789999999998
Q ss_pred HHHHHHHhc
Q 013861 424 LQAARCLCG 432 (435)
Q Consensus 424 ~~~a~~L~~ 432 (435)
..+.+++++
T Consensus 235 ~~~~~~~~~ 243 (250)
T 3ks6_A 235 TLAIALRTE 243 (250)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888887753
No 278
>2nql_A AGR_PAT_674P, isomerase/lactonizing enzyme; enolase, structural genomics, protein structure initiative, nysgxrc; 1.80A {Agrobacterium tumefaciens str} PDB: 4dn1_A
Probab=47.04 E-value=67 Score=31.28 Aligned_cols=135 Identities=14% Similarity=0.048 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHHcCCCeec----CCCCCC--chHHHHHHHHHHCCCCCceeechhhhhcccccccchhhhcCCCCCCC
Q 013861 244 TVHQLCKQAVSQARAGADVVS----PSDMMD--GRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGD 317 (435)
Q Consensus 244 Tv~~Lak~Avs~A~AGADiVA----PSDMMD--GrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRdA~~Sap~fgD 317 (435)
+.+.+++.|....++|.+.|= -.+ ++ -+|.+||+++ |- ++.||- + + +
T Consensus 164 ~~e~~~~~a~~~~~~Gf~~vKik~g~~~-~~~~e~v~avr~a~---g~-d~~l~v---D-----------a---n----- 216 (388)
T 2nql_A 164 TLKARGELAKYWQDRGFNAFKFATPVAD-DGPAAEIANLRQVL---GP-QAKIAA---D-----------M---H----- 216 (388)
T ss_dssp SHHHHHHHHHHHHHTTCCEEEEEGGGCT-TCHHHHHHHHHHHH---CT-TSEEEE---E-----------C---C-----
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeCCCCC-hHHHHHHHHHHHHh---CC-CCEEEE---E-----------C---C-----
Confidence 556778888888899999863 112 23 4466666655 52 555552 1 1 1
Q ss_pred ccccCCCCCCHHHHHHHHHhccc-ccccEEecccCCCcccCCC-chHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCC
Q 013861 318 KKTYQMNPANYREALVEAQADES-EGADILLFSVLGSQVKPGL-PYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALK 395 (435)
Q Consensus 318 RktYQmdp~N~~EAlre~~~D~~-EGADilM~~~~~~~VKPal-~YLDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G 395 (435)
..| +..||++-+.. ++ .|.|++= .|-. ..++-.+++++++++||++=.---....++.+.+.|
T Consensus 217 -~~~-----~~~~a~~~~~~-l~~~~i~~iE--------qP~~~~d~~~~~~l~~~~~iPI~~dE~~~~~~~~~~~i~~~ 281 (388)
T 2nql_A 217 -WNQ-----TPERALELIAE-MQPFDPWFAE--------APVWTEDIAGLEKVSKNTDVPIAVGEEWRTHWDMRARIERC 281 (388)
T ss_dssp -SCS-----CHHHHHHHHHH-HGGGCCSCEE--------CCSCTTCHHHHHHHHTSCCSCEEECTTCCSHHHHHHHHTTS
T ss_pred -CCC-----CHHHHHHHHHH-HhhcCCCEEE--------CCCChhhHHHHHHHHhhCCCCEEEeCCcCCHHHHHHHHHcC
Confidence 122 34676665544 33 3555443 2321 268899999999999999744322345667777777
Q ss_pred CCch---h---hHHHHHHHH---HHHhcccEeeh
Q 013861 396 MIDE---Q---RVMMESLMC---LRRAGADIILT 420 (435)
Q Consensus 396 ~ide---~---~~v~Esl~~---ikRAGAd~IiT 420 (435)
.+|- | --+.|++.. .+..|-.+++.
T Consensus 282 ~~d~v~ik~~~GGit~~~~i~~~A~~~g~~~~~h 315 (388)
T 2nql_A 282 RIAIVQPEMGHKGITNFIRIGALAAEHGIDVIPH 315 (388)
T ss_dssp CCSEECCCHHHHCHHHHHHHHHHHHHHTCEECCC
T ss_pred CCCEEEecCCCCCHHHHHHHHHHHHHcCCeEEee
Confidence 7664 1 135555543 45567777775
No 279
>3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, pyridoxal 5-phosphate synthase, PLP G3 SNO1, biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A
Probab=46.99 E-value=14 Score=36.51 Aligned_cols=44 Identities=23% Similarity=0.293 Sum_probs=33.3
Q ss_pred CCCCHHHHHHHHHhcccccccEEecccCCCccc---------------------------------------CCCchHHH
Q 013861 324 NPANYREALVEAQADESEGADILLFSVLGSQVK---------------------------------------PGLPYLDV 364 (435)
Q Consensus 324 dp~N~~EAlre~~~D~~EGADilM~~~~~~~VK---------------------------------------Pal~YLDI 364 (435)
+-+|..||+|.+ +||||||- .| .-.+=.|+
T Consensus 121 ~~~~l~EAlrri----~eGA~mIr-------Ttge~gtg~v~~av~h~r~~~~~i~~l~g~~t~~el~~~a~~~~ad~el 189 (291)
T 3o07_A 121 GAKDLGEALRRI----NEGAAMIR-------TKGEAGTGDVSEAVKHIRRITEEIKACQQLKSEDDIAKVAEEMRVPVSL 189 (291)
T ss_dssp EESSHHHHHHHH----HHTCSEEE-------ECCCTTSCCTHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHH
T ss_pred eCCCHHHHHHHH----HCCCCEEE-------ecCcCCCccHHHHHHHHHHHHHHHHHHHcCCCHHHhhhcccccCCCHHH
Confidence 447889988876 58999998 43 11123789
Q ss_pred HHHHHhhCCCCeEE
Q 013861 365 IRLLRDKYPLPIAA 378 (435)
Q Consensus 365 Ir~vk~~~~lPvaa 378 (435)
|+++++..++||.+
T Consensus 190 I~~Ike~~~IPVV~ 203 (291)
T 3o07_A 190 LKDVLEKGKLPVVN 203 (291)
T ss_dssp HHHHHHHTSCSSCE
T ss_pred HHHHHHccCCCEEE
Confidence 99999999999864
No 280
>3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A*
Probab=46.64 E-value=34 Score=33.31 Aligned_cols=94 Identities=16% Similarity=0.321 Sum_probs=60.6
Q ss_pred HHHHHHHHHHcCCCeEEEeecC---------C--CCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCC
Q 013861 159 LVQEVAKARDVGVNSVVLFPKV---------P--DALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSD 227 (435)
Q Consensus 159 l~~~v~~~~~~GI~sv~LFgvi---------~--~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTsh 227 (435)
..+-.+.+.+.|...|-|.+-= | +.-.|+.|-.--|.--++.+.|+.+|+.. +.-|..-+..+.|..
T Consensus 146 f~~aA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~avr~~v-~~pv~vRls~~~~~~- 223 (340)
T 3gr7_A 146 FQNGARRAKEAGFDVIEIHAAHGYLINEFLSPLSNRRQDEYGGSPENRYRFLGEVIDAVREVW-DGPLFVRISASDYHP- 223 (340)
T ss_dssp HHHHHHHHHHHTCSEEEEEECTTCHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHC-CSCEEEEEESCCCST-
T ss_pred HHHHHHHHHHcCCCEEEEccccchHHHHcCCCccCcCCCcccCCHHHHHHHHHHHHHHHHHhc-CCceEEEeccccccC-
Confidence 4555566788999999997531 2 23457766544444446678899999998 776776666555532
Q ss_pred CcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCC
Q 013861 228 GHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSD 267 (435)
Q Consensus 228 GHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSD 267 (435)
+| .+.++ ..+.|-.+.++|+|.|--|+
T Consensus 224 --------~g-~~~~~----~~~la~~L~~~Gvd~i~vs~ 250 (340)
T 3gr7_A 224 --------DG-LTAKD----YVPYAKRMKEQGVDLVDVSS 250 (340)
T ss_dssp --------TS-CCGGG----HHHHHHHHHHTTCCEEEEEC
T ss_pred --------CC-CCHHH----HHHHHHHHHHcCCCEEEEec
Confidence 12 22233 33455567889999998764
No 281
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=46.63 E-value=25 Score=27.68 Aligned_cols=65 Identities=11% Similarity=0.146 Sum_probs=42.6
Q ss_pred CCHHHHHHHHHhcccccccEEecccCCCcccC-CCchHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCC
Q 013861 326 ANYREALVEAQADESEGADILLFSVLGSQVKP-GLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKM 396 (435)
Q Consensus 326 ~N~~EAlre~~~D~~EGADilM~~~~~~~VKP-al~YLDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G~ 396 (435)
.|..||+..... ..--|+|+.. ... | ++.-+++++.+|+...+|+...--..+...+..+.+.|.
T Consensus 36 ~~~~~a~~~l~~--~~~~dlvi~D---~~l-~~~~~g~~~~~~l~~~~~~~ii~ls~~~~~~~~~~~~~~g~ 101 (140)
T 3h5i_A 36 LTGEAAVEKVSG--GWYPDLILMD---IEL-GEGMDGVQTALAIQQISELPVVFLTAHTEPAVVEKIRSVTA 101 (140)
T ss_dssp SSHHHHHHHHHT--TCCCSEEEEE---SSC-SSSCCHHHHHHHHHHHCCCCEEEEESSSSCCCCGGGGGSCE
T ss_pred cChHHHHHHHhc--CCCCCEEEEe---ccC-CCCCCHHHHHHHHHhCCCCCEEEEECCCCHHHHHHHHhCCC
Confidence 366777776643 2457999821 111 4 477899999999987899998776555444444444454
No 282
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=46.58 E-value=39 Score=25.98 Aligned_cols=65 Identities=28% Similarity=0.318 Sum_probs=45.0
Q ss_pred CHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhC-CCCeEEEEechHHHHHHHHHHCCCCc
Q 013861 327 NYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMID 398 (435)
Q Consensus 327 N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~-~lPvaaYqVSGEYaMikaAa~~G~id 398 (435)
|..||+..... ...|+++... --|++.-+++++.+++.. .+|+...--+++......+.+.|..+
T Consensus 35 ~~~~a~~~~~~---~~~dlvl~D~----~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~ 100 (136)
T 1mvo_A 35 DGEEALKKAET---EKPDLIVLDV----MLPKLDGIEVCKQLRQQKLMFPILMLTAKDEEFDKVLGLELGADD 100 (136)
T ss_dssp SHHHHHHHHHH---HCCSEEEEES----SCSSSCHHHHHHHHHHTTCCCCEEEEECTTCCCCHHHHHHTTCCE
T ss_pred CHHHHHHHHhh---cCCCEEEEec----CCCCCCHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHhCCCCE
Confidence 56677665442 4579988211 126667789999999874 68999887777776666667777654
No 283
>2hmc_A AGR_L_411P, dihydrodipicolinate synthase; alpha-beta barrel (TIM barrel), structural genomics, PSI-2, structure initiative; HET: MSE; 1.90A {Agrobacterium tumefaciens str}
Probab=46.38 E-value=25 Score=34.57 Aligned_cols=55 Identities=15% Similarity=0.167 Sum_probs=35.6
Q ss_pred CHHHHHHHHHhcccccccEEecccCCCccc-CCCc-hHHHHHHHHh-hCCCCeEEEEec
Q 013861 327 NYREALVEAQADESEGADILLFSVLGSQVK-PGLP-YLDVIRLLRD-KYPLPIAAYQVS 382 (435)
Q Consensus 327 N~~EAlre~~~D~~EGADilM~~~~~~~VK-Pal~-YLDIIr~vk~-~~~lPvaaYqVS 382 (435)
|.+|+++.++.=.+-|||.+|. +.-...| |..- -.+=.+.+.+ .+++||..|++-
T Consensus 103 st~eai~la~~A~~~Gadavlv-~~P~y~~~~s~~~l~~~f~~IA~aa~~lPiilYn~P 160 (344)
T 2hmc_A 103 NTASAVAHAVHAQKVGAKGLMV-IPRVLSRGSVIAAQKAHFKAILSAAPEIPAVIYNSP 160 (344)
T ss_dssp SHHHHHHHHHHHHHHTCSEEEE-CCCCSSSTTCHHHHHHHHHHHHHHSTTSCEEEEEBG
T ss_pred CHHHHHHHHHHHHhcCCCEEEE-CCCccCCCCCHHHHHHHHHHHHhhCCCCcEEEEecC
Confidence 6889998888777789999991 1111223 2100 0223346677 789999999974
No 284
>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5
Probab=46.30 E-value=67 Score=31.12 Aligned_cols=78 Identities=13% Similarity=0.101 Sum_probs=51.6
Q ss_pred HHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCcc
Q 013861 160 VQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVI 239 (435)
Q Consensus 160 ~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTshGHcGIv~e~g~I 239 (435)
.+.++++.+.|++.|.+|-.+.+ . -...+.++..|+.. +.++..++ |.++
T Consensus 96 ~~~i~~a~~aGvd~v~I~~~~s~----~---------~~~~~~i~~ak~~G--~~v~~~~~-~a~~-------------- 145 (345)
T 1nvm_A 96 VHDLKNAYQAGARVVRVATHCTE----A---------DVSKQHIEYARNLG--MDTVGFLM-MSHM-------------- 145 (345)
T ss_dssp HHHHHHHHHHTCCEEEEEEETTC----G---------GGGHHHHHHHHHHT--CEEEEEEE-STTS--------------
T ss_pred HHHHHHHHhCCcCEEEEEEeccH----H---------HHHHHHHHHHHHCC--CEEEEEEE-eCCC--------------
Confidence 56788899999999999843211 1 13577888998874 44454443 2221
Q ss_pred ccHHHHHHHHHHHHHHHHcCCCeecCCCCCC
Q 013861 240 MNDETVHQLCKQAVSQARAGADVVSPSDMMD 270 (435)
Q Consensus 240 dND~Tv~~Lak~Avs~A~AGADiVAPSDMMD 270 (435)
. +.+.+.+++-...++|||+|+-.||.=
T Consensus 146 ~---~~e~~~~ia~~~~~~Ga~~i~l~DT~G 173 (345)
T 1nvm_A 146 I---PAEKLAEQGKLMESYGATCIYMADSGG 173 (345)
T ss_dssp S---CHHHHHHHHHHHHHHTCSEEEEECTTC
T ss_pred C---CHHHHHHHHHHHHHCCCCEEEECCCcC
Confidence 1 245666666666778999999988754
No 285
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=46.22 E-value=80 Score=24.99 Aligned_cols=65 Identities=18% Similarity=0.204 Sum_probs=42.6
Q ss_pred CHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhh-----CCCCeEEEEechHHHHHHHHHHCCCCc
Q 013861 327 NYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDK-----YPLPIAAYQVSGEYSMIKAGGALKMID 398 (435)
Q Consensus 327 N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~-----~~lPvaaYqVSGEYaMikaAa~~G~id 398 (435)
|..||+.... ++.-|+|+... -=|++.=+++++.+|+. ..+|+...--..+-..+..+.+.|..|
T Consensus 46 ~~~~al~~~~---~~~~dlvl~D~----~mp~~~g~~~~~~lr~~~~~~~~~~pii~~s~~~~~~~~~~~~~~Ga~~ 115 (143)
T 3m6m_D 46 GAEQVLDAMA---EEDYDAVIVDL----HMPGMNGLDMLKQLRVMQASGMRYTPVVVLSADVTPEAIRACEQAGARA 115 (143)
T ss_dssp SHHHHHHHHH---HSCCSEEEEES----CCSSSCHHHHHHHHHHHHHTTCCCCCEEEEESCCCHHHHHHHHHTTCSE
T ss_pred CHHHHHHHHh---cCCCCEEEEeC----CCCCCCHHHHHHHHHhchhccCCCCeEEEEeCCCCHHHHHHHHHcChhh
Confidence 5566666553 35689998111 12778889999999853 248998876655555666666666544
No 286
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=45.94 E-value=43 Score=28.23 Aligned_cols=66 Identities=15% Similarity=0.198 Sum_probs=49.5
Q ss_pred CCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCc
Q 013861 326 ANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMID 398 (435)
Q Consensus 326 ~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G~id 398 (435)
.|..||+..... ..-|+|+... --|.+.-+++++.+++..+.|+...--.++......+.+.|..|
T Consensus 45 ~~~~~al~~~~~---~~~dlvi~D~----~~p~~~g~~~~~~l~~~~~~pii~lt~~~~~~~~~~~~~~ga~~ 110 (205)
T 1s8n_A 45 GDGQEAVELAEL---HKPDLVIMDV----KMPRRDGIDAASEIASKRIAPIVVLTAFSQRDLVERARDAGAMA 110 (205)
T ss_dssp SSHHHHHHHHHH---HCCSEEEEES----SCSSSCHHHHHHHHHHTTCSCEEEEEEGGGHHHHHTTGGGSCEE
T ss_pred CCHHHHHHHHhh---cCCCEEEEeC----CCCCCChHHHHHHHHhcCCCCEEEEecCCCHHHHHHHHhcCCcE
Confidence 467777766543 3579888221 12777889999999998888999988888888888888888765
No 287
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=45.90 E-value=42 Score=25.54 Aligned_cols=66 Identities=9% Similarity=0.171 Sum_probs=43.1
Q ss_pred CCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhh---CCCCeEEEEechHHHHHHHHHHCCCCc
Q 013861 326 ANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDK---YPLPIAAYQVSGEYSMIKAGGALKMID 398 (435)
Q Consensus 326 ~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~---~~lPvaaYqVSGEYaMikaAa~~G~id 398 (435)
.|..||+..... +..|+++.. . -=|++.-+++++.+++. ..+|+...--+++......+.+.|..+
T Consensus 38 ~~~~~a~~~~~~---~~~dlvl~D---~-~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~ 106 (129)
T 1p6q_A 38 GDGEQGMKIMAQ---NPHHLVISD---F-NMPKMDGLGLLQAVRANPATKKAAFIILTAQGDRALVQKAAALGANN 106 (129)
T ss_dssp SSHHHHHHHHHT---SCCSEEEEC---S-SSCSSCHHHHHHHHTTCTTSTTCEEEECCSCCCHHHHHHHHHHTCSC
T ss_pred CCHHHHHHHHHc---CCCCEEEEe---C-CCCCCCHHHHHHHHhcCccccCCCEEEEeCCCCHHHHHHHHHcCCCE
Confidence 467777765543 457998811 1 12667778999999985 368888876666666555555555543
No 288
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=45.87 E-value=51 Score=37.55 Aligned_cols=223 Identities=16% Similarity=0.153 Sum_probs=120.0
Q ss_pred HHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCc
Q 013861 159 LVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGV 238 (435)
Q Consensus 159 l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTshGHcGIv~e~g~ 238 (435)
..+.++.+++.|+..|-+|..+. .---+..+++.+|+.. ..+..++| ||.|=-| +.
T Consensus 647 ~~~~i~~a~~~g~d~irif~sl~-------------~~~~~~~~i~~~~~~g--~~v~~~i~---~~~~~~d------~~ 702 (1165)
T 2qf7_A 647 VKYFVRQAAKGGIDLFRVFDCLN-------------WVENMRVSMDAIAEEN--KLCEAAIC---YTGDILN------SA 702 (1165)
T ss_dssp HHHHHHHHHHHTCCEEEEECTTC-------------CGGGGHHHHHHHHHTT--CEEEEEEE---CCSCTTC------TT
T ss_pred HHHHHHHHHhcCcCEEEEEeeHH-------------HHHHHHHHHHHHHhcc--ceEEEEEE---EeccccC------CC
Confidence 45789999999999999996421 1125668999999886 45555555 4443111 11
Q ss_pred cccHHHHHHHHHHHHHHHHcCCCeecCCCCCCc--------hHHHHHHHHHHC-CC--CCceeechhhhhcccccccchh
Q 013861 239 IMNDETVHQLCKQAVSQARAGADVVSPSDMMDG--------RVGAIRAALDAE-GF--QHVSIMSYTAKYASSFYGPFRE 307 (435)
Q Consensus 239 IdND~Tv~~Lak~Avs~A~AGADiVAPSDMMDG--------rVgAIR~aLD~~-Gf--~~v~IMSYSaKyASafYGPFRd 307 (435)
....+++.+.+.+-...++|||+|+-.||.=. .|.++|+.++-. ++ +|+.=|+.+.=.+..-.|- +
T Consensus 703 -r~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~~P~~~~~lv~~l~~~~~~~i~~H~Hnd~GlAvAn~laAv~aGa--~ 779 (1165)
T 2qf7_A 703 -RPKYDLKYYTNLAVELEKAGAHIIAVKDMAGLLKPAAAKVLFKALREATGLPIHFHTHDTSGIAAATVLAAVEAGV--D 779 (1165)
T ss_dssp -SGGGCHHHHHHHHHHHHHTTCSEEEEEETTCCCCHHHHHHHHHHHHHHCSSCEEEEECBTTSCHHHHHHHHHHTTC--S
T ss_pred -CCCCCHHHHHHHHHHHHHcCCCEEEEeCccCCcCHHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHhCC--C
Confidence 01234667777777788999999999998752 456666655210 21 4455566665566555662 3
Q ss_pred hhcCCC-CCCCccccCCCCCCHHHHHHHHHhcc--cccccEEecccCCCcccCCCchHHHHHHHHhhC---CCC------
Q 013861 308 ALDSNP-RFGDKKTYQMNPANYREALVEAQADE--SEGADILLFSVLGSQVKPGLPYLDVIRLLRDKY---PLP------ 375 (435)
Q Consensus 308 A~~Sap-~fgDRktYQmdp~N~~EAlre~~~D~--~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~---~lP------ 375 (435)
.++++- .+|-| +.|. + -|.+..+.... +-|-|+=- +. ..-+.+.++++.+ .-+
T Consensus 780 ~vd~ti~GlGe~-~Gn~---~-le~vv~~L~~~g~~tgidl~~-------L~---~~s~~~~~~~~~~~~~~~~~~~~~~ 844 (1165)
T 2qf7_A 780 AVDAAMDALSGN-TSQP---C-LGSIVEALSGSERDPGLDPAW-------IR---RISFYWEAVRNQYAAFESDLKGPAS 844 (1165)
T ss_dssp EEEEBCGGGCSB-TSCC---B-HHHHHHHHTTSTTCCCCCHHH-------HH---HHHHHHHHHHGGGGGGCCCCCSCCT
T ss_pred EEEecccccCCC-ccch---h-HHHHHHHHHhcCCCccccHHH-------HH---HHHHHHHHHhhhccCCCCCccCCcc
Confidence 344443 24544 3322 1 23333333321 11222211 11 1123333334332 111
Q ss_pred -eEEEEech-HHHHH-HHHHHCCCCchhhHHHHHHHHH-HHhcccEeehhcH
Q 013861 376 -IAAYQVSG-EYSMI-KAGGALKMIDEQRVMMESLMCL-RRAGADIILTYFA 423 (435)
Q Consensus 376 -vaaYqVSG-EYaMi-kaAa~~G~ide~~~v~Esl~~i-kRAGAd~IiTYfA 423 (435)
|-.+|+.| -|+-+ ..+.+.|+.|.-.-++|-+... +..|=-.-+|-+-
T Consensus 845 ~v~~~~~pGG~~snl~~q~~~~g~~~~~~~v~~~~~~v~~~~G~~~~vtp~S 896 (1165)
T 2qf7_A 845 EVYLHEMPGGQFTNLKEQARSLGLETRWHQVAQAYADANQMFGDIVKVTPSS 896 (1165)
T ss_dssp THHHHCCCHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTSCCCSTTHH
T ss_pred ceEeccCCCccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHcCCCccCCChh
Confidence 22345544 45444 4467789887666667776666 3445444455443
No 289
>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A*
Probab=45.67 E-value=31 Score=33.90 Aligned_cols=61 Identities=21% Similarity=0.265 Sum_probs=38.4
Q ss_pred HHHhcccc--cccEEeccc-CCCcccCCCchHHHHHHHHhhC-CCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHH
Q 013861 334 EAQADESE--GADILLFSV-LGSQVKPGLPYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMC 409 (435)
Q Consensus 334 e~~~D~~E--GADilM~~~-~~~~VKPal~YLDIIr~vk~~~-~lPvaaYqVSGEYaMikaAa~~G~ide~~~v~Esl~~ 409 (435)
.+..-+++ |+|++-+.. .| .....+|.|+.+|+.+ ++||.+=.|. +. |....
T Consensus 122 ~~~~l~~~~~g~~~i~i~~~~g----~~~~~~~~i~~lr~~~~~~~vi~g~v~---------------t~-----e~A~~ 177 (351)
T 2c6q_A 122 QLEQILEAIPQVKYICLDVANG----YSEHFVEFVKDVRKRFPQHTIMAGNVV---------------TG-----EMVEE 177 (351)
T ss_dssp HHHHHHHHCTTCCEEEEECSCT----TBHHHHHHHHHHHHHCTTSEEEEEEEC---------------SH-----HHHHH
T ss_pred HHHHHHhccCCCCEEEEEecCC----CcHHHHHHHHHHHHhcCCCeEEEEeCC---------------CH-----HHHHH
Confidence 33333445 999887332 12 1224688999999999 7999864542 22 33345
Q ss_pred HHHhcccEe
Q 013861 410 LRRAGADII 418 (435)
Q Consensus 410 ikRAGAd~I 418 (435)
+.++|||+|
T Consensus 178 a~~aGaD~I 186 (351)
T 2c6q_A 178 LILSGADII 186 (351)
T ss_dssp HHHTTCSEE
T ss_pred HHHhCCCEE
Confidence 567888888
No 290
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=45.23 E-value=83 Score=25.23 Aligned_cols=66 Identities=12% Similarity=0.138 Sum_probs=41.3
Q ss_pred CCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhC-CCCeEEEEechHHHHHHHHHHCCC
Q 013861 326 ANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKM 396 (435)
Q Consensus 326 ~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~-~lPvaaYqVSGEYaMikaAa~~G~ 396 (435)
.|..||+..+... ...-|+|++.. --|.+.-+++++.+|+.. .+||..+--..+-..+..+.+.|.
T Consensus 68 ~~~~~al~~l~~~-~~~~dliilD~----~l~~~~g~~~~~~lr~~~~~~~ii~ls~~~~~~~~~~~~~~g~ 134 (157)
T 3hzh_A 68 ADGEEAVIKYKNH-YPNIDIVTLXI----TMPKMDGITCLSNIMEFDKNARVIMISALGKEQLVKDCLIKGA 134 (157)
T ss_dssp SSHHHHHHHHHHH-GGGCCEEEECS----SCSSSCHHHHHHHHHHHCTTCCEEEEESCCCHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHhc-CCCCCEEEEec----cCCCccHHHHHHHHHhhCCCCcEEEEeccCcHHHHHHHHHcCC
Confidence 3667777666431 11468988221 126677899999999876 599988765444444444444443
No 291
>2r14_A Morphinone reductase; H-tunnelling, flavoprotein, NADH, hydride transfer, oxidoreductase; HET: FMN TXD; 1.40A {Pseudomonas putida} PDB: 3gx9_A* 1gwj_A*
Probab=45.19 E-value=55 Score=32.44 Aligned_cols=188 Identities=12% Similarity=0.048 Sum_probs=99.8
Q ss_pred hHHHHHHHHHHcCCCeEEEeecC---------C--CCCCCcccCcCcCCCCCHHHHHHHHHHHCC-CeEEEeeecccCCC
Q 013861 158 GLVQEVAKARDVGVNSVVLFPKV---------P--DALKSPTGDEAYNDNGLVPRTIWLLKDRYP-DLVIYTDVALDPYS 225 (435)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi---------~--~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~P-dl~IitDVcLc~YT 225 (435)
...+-++.+.+.|...|-|-+-= | +...|+.|-.--|.--++.+.++.+++.++ + -|...+....+-
T Consensus 167 ~f~~aA~~a~~aGfDgVEIh~a~GYLl~QFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr~avg~~-~v~vrls~~~~~ 245 (377)
T 2r14_A 167 DYRQAAQRAKRAGFDMVEVHAANACLPNQFLATGTNRRTDQYGGSIENRARFPLEVVDAVAEVFGPE-RVGIRLTPFLEL 245 (377)
T ss_dssp HHHHHHHHHHHHTCSEEEEEECTTCHHHHHHSTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGG-GEEEEECTTCCC
T ss_pred HHHHHHHHHHHcCCCEEEEcCcccchHHhccCCccccCCCccCcchhhchHHHHHHHHHHHHHcCCC-cEEEEecccccc
Confidence 35566667788999999996420 2 234566665433333356677899999986 5 677776654332
Q ss_pred CCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCCCceeechhhhhcccccccc
Q 013861 226 SDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPF 305 (435)
Q Consensus 226 shGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMMDGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPF 305 (435)
...|+ | .+++...+.|-...++|+|.|.-|.-+ .. .. ..+. + . .+-.-+
T Consensus 246 ~~~~~------~-----~~~~~~~~la~~le~~Gvd~i~v~~~~---~~---~~--~~~~-~---~--------~~~~~i 294 (377)
T 2r14_A 246 FGLTD------D-----EPEAMAFYLAGELDRRGLAYLHFNEPD---WI---GG--DITY-P---E--------GFREQM 294 (377)
T ss_dssp TTCCC------S-----CHHHHHHHHHHHHHHTTCSEEEEECCC--------------CC-C---T--------THHHHH
T ss_pred CCCCC------C-----CCHHHHHHHHHHHHHcCCCEEEEeCCc---cc---CC--CCcc-h---H--------HHHHHH
Confidence 11121 1 133445555666778999999866521 10 00 0010 0 1 112233
Q ss_pred hhhhcCCCCCCCccccCCCCCCHHHHHHHHHhccccc-ccEEecccCCCcccCCCchHHHHHHHHhhCCCCeEEEEechH
Q 013861 306 REALDSNPRFGDKKTYQMNPANYREALVEAQADESEG-ADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAAYQVSGE 384 (435)
Q Consensus 306 RdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EG-ADilM~~~~~~~VKPal~YLDIIr~vk~~~~lPvaaYqVSGE 384 (435)
|++++ -|-.+.- . +++.+.+++ +++| ||+|| + -.|.+.-=|+++++++. .|+..|.-+.=
T Consensus 295 k~~~~-iPvi~~G-g--i~~~~a~~~-------l~~g~aD~V~---i---gR~~l~~P~l~~k~~~g--~~l~~~~~~t~ 355 (377)
T 2r14_A 295 RQRFK-GGLIYCG-N--YDAGRAQAR-------LDDNTADAVA---F---GRPFIANPDLPERFRLG--AALNEPDPSTF 355 (377)
T ss_dssp HHHCC-SEEEEES-S--CCHHHHHHH-------HHTTSCSEEE---E---SHHHHHCTTHHHHHHHT--CCCCCCCGGGS
T ss_pred HHHCC-CCEEEEC-C--CCHHHHHHH-------HHCCCceEEe---e---cHHHHhCchHHHHHHcC--CCCCCCCHHhc
Confidence 44442 2332211 1 222222222 2456 99999 2 24444555889999875 45556666555
Q ss_pred HHHHHHHHHCCCCchh
Q 013861 385 YSMIKAGGALKMIDEQ 400 (435)
Q Consensus 385 YaMikaAa~~G~ide~ 400 (435)
|. ...+|++|..
T Consensus 356 y~----~~~~gy~dyp 367 (377)
T 2r14_A 356 YG----GAEVGYTDYP 367 (377)
T ss_dssp SS----SSSTTTTCSC
T ss_pred CC----CCCCCcccCc
Confidence 52 2346887763
No 292
>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1
Probab=45.01 E-value=33 Score=29.72 Aligned_cols=69 Identities=28% Similarity=0.363 Sum_probs=41.6
Q ss_pred CHHHHHHHHHhcccccccEEeccc-CCCcccCC--CchHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhhHH
Q 013861 327 NYREALVEAQADESEGADILLFSV-LGSQVKPG--LPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVM 403 (435)
Q Consensus 327 N~~EAlre~~~D~~EGADilM~~~-~~~~VKPa--l~YLDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G~ide~~~v 403 (435)
+..|+. ++ .+.|+|+|+++. ....-||+ ..-++.++++++.+++|+.+ .|-++.+++
T Consensus 117 t~~e~~-~~---~~~g~d~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~pvia---------------~GGI~~~nv- 176 (215)
T 1xi3_A 117 SLEEAL-EA---EKKGADYLGAGSVFPTKTKEDARVIGLEGLRKIVESVKIPVVA---------------IGGINKDNA- 176 (215)
T ss_dssp SHHHHH-HH---HHHTCSEEEEECSSCC----CCCCCHHHHHHHHHHHCSSCEEE---------------ESSCCTTTH-
T ss_pred CHHHHH-HH---HhcCCCEEEEcCCccCCCCCCCCCcCHHHHHHHHHhCCCCEEE---------------ECCcCHHHH-
Confidence 556643 33 357999999542 22222333 23578899999988999864 456664432
Q ss_pred HHHHHHHHHhcccEee
Q 013861 404 MESLMCLRRAGADIIL 419 (435)
Q Consensus 404 ~Esl~~ikRAGAd~Ii 419 (435)
- .+..+|||.|+
T Consensus 177 ~----~~~~~Ga~gv~ 188 (215)
T 1xi3_A 177 R----EVLKTGVDGIA 188 (215)
T ss_dssp H----HHHTTTCSEEE
T ss_pred H----HHHHcCCCEEE
Confidence 3 34568999875
No 293
>3dmp_A Uracil phosphoribosyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.60A {Burkholderia pseudomallei} SCOP: c.61.1.1
Probab=44.95 E-value=28 Score=32.41 Aligned_cols=48 Identities=21% Similarity=0.478 Sum_probs=37.2
Q ss_pred hHHHHHHHHHHcCC--CeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccC
Q 013861 158 GLVQEVAKARDVGV--NSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDP 223 (435)
Q Consensus 158 ~l~~~v~~~~~~GI--~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~ 223 (435)
.+..-++.+.+.|. ++|.+--.|- -+.+++.+.++|||+-|+| .++|+
T Consensus 144 T~~~ai~~L~~~G~pe~~I~~~~~va-----------------a~egl~~l~~~~P~v~i~t-a~iD~ 193 (217)
T 3dmp_A 144 SAAHAIDVLKRRGVPGERLMFLALVA-----------------APEGVQVFQDAHPDVKLYV-ASLDS 193 (217)
T ss_dssp HHHHHHHHHHTTTCCGGGEEEECSEE-----------------CHHHHHHHHHHCTTCEEEE-SEECC
T ss_pred HHHHHHHHHHHcCCCcCeEEEEEEEe-----------------CHHHHHHHHHHCCCCEEEE-EEecC
Confidence 58889999999999 8877754321 2578999999999998887 44444
No 294
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=44.80 E-value=18 Score=33.32 Aligned_cols=18 Identities=17% Similarity=0.418 Sum_probs=15.8
Q ss_pred hHHHHHHHHhhCCCCeEE
Q 013861 361 YLDVIRLLRDKYPLPIAA 378 (435)
Q Consensus 361 YLDIIr~vk~~~~lPvaa 378 (435)
++++|+++|+.+++|+..
T Consensus 82 ~~~~i~~ir~~~~~Pv~~ 99 (262)
T 1rd5_A 82 VLEMLREVTPELSCPVVL 99 (262)
T ss_dssp HHHHHHHHGGGCSSCEEE
T ss_pred HHHHHHHHHhcCCCCEEE
Confidence 578999999999999876
No 295
>3nwr_A A rubisco-like protein; lyase; HET: KCX; 1.50A {Burkholderia fungorum}
Probab=44.67 E-value=18 Score=37.31 Aligned_cols=137 Identities=15% Similarity=0.151 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCCCceeechhhhhcccccccchhhhcCCCC-CCCcccc
Q 013861 243 ETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPR-FGDKKTY 321 (435)
Q Consensus 243 ~Tv~~Lak~Avs~A~AGADiVAPSDMMDGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRdA~~Sap~-fgDRktY 321 (435)
-|-+.+++++..++..|.|+|= |.++..+-+-|-+--.+--+ .+|+..+-. -|.+|-|
T Consensus 174 Ls~~~~a~~~ye~~~GGlDfiK----------------DDE~~~~q~f~p~~eRv~~v-----~eai~rA~~eTGe~k~y 232 (432)
T 3nwr_A 174 LSAAETAALVRELCEAGVDFIK----------------DDEVCANPAHAPLAERVRAV-----MSEVRRYRERSGRPVMV 232 (432)
T ss_dssp CCHHHHHHHHHHHHHHTCSEEE----------------CCTTCSSCTTSCHHHHHHHH-----HHHHHHHHHHHSCCCEE
T ss_pred CCHHHHHHHHHHHHhcCCceeE----------------CCCCCCCCCcccHHHHHHHH-----HHHHHHHHHHhCCcceE
Confidence 3667899999999999999973 22333222222221111000 011111111 2778888
Q ss_pred CCCCC-CHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchh
Q 013861 322 QMNPA-NYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQ 400 (435)
Q Consensus 322 Qmdp~-N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G~ide~ 400 (435)
-+|.. ...|.++.++.=.+.|++++| |-+...=++.++.+++.+++|+-+ |= +-.|.++..
T Consensus 233 ~~NiT~~~~em~~Ra~~a~e~G~~~~m-------vd~~~~G~~a~~~l~r~~~~~lh~-Hr----------A~hga~~r~ 294 (432)
T 3nwr_A 233 AFNITDDLDAMRRHAELVEREGGSCVM-------ASINWCGFSAIQSLRRTTPLVLHA-HR----------NGYGMMSRD 294 (432)
T ss_dssp EEECCSCHHHHHHHHHHHHHTTCCEEE-------EEHHHHCHHHHHHHHHHCCSEEEE-EC----------TTTTTTTSS
T ss_pred EeecCCCHHHHHHHHHHHHHcCCCEEE-------EeccCCCHHHHHHHHhcCCceEEE-Cc----------CcccccccC
Confidence 77664 567788888888899999999 766433367889999888999865 33 224555543
Q ss_pred h------HHHHHHHHHHHhcccEeeh
Q 013861 401 R------VMMESLMCLRRAGADIILT 420 (435)
Q Consensus 401 ~------~v~Esl~~ikRAGAd~IiT 420 (435)
. -++ -+.+|-+|+|.|++
T Consensus 295 ~~~Gi~~~vl--~Kl~RlaG~D~ih~ 318 (432)
T 3nwr_A 295 PALGMSFQAY--QTLWRLSGVDHMHV 318 (432)
T ss_dssp TTEEECHHHH--HHHHHTBTCSEEEE
T ss_pred CCCCcCHHHH--HHHHHHcCCCeeec
Confidence 2 133 45677799999985
No 296
>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri}
Probab=44.61 E-value=20 Score=31.29 Aligned_cols=85 Identities=16% Similarity=0.198 Sum_probs=52.3
Q ss_pred CCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCch-----HHHHHHHHhhC-CCCeEE----EEechHHHHHHHHH
Q 013861 323 MNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPY-----LDVIRLLRDKY-PLPIAA----YQVSGEYSMIKAGG 392 (435)
Q Consensus 323 mdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~Y-----LDIIr~vk~~~-~lPvaa----YqVSGEYaMikaAa 392 (435)
+|..|.+|++..++. +.+|+|++ |.++++ +++|+.+|+.+ ++|+.+ |++ ++. .++.++
T Consensus 7 ~d~~~~~~~~~~~~~-~~~~v~~i---------ev~~~~~~~~g~~~i~~l~~~~~~~~i~~~l~~~di-~~~-~~~~a~ 74 (207)
T 3ajx_A 7 IDLLSTEAALELAGK-VAEYVDII---------ELGTPLIKAEGLSVITAVKKAHPDKIVFADMKTMDA-GEL-EADIAF 74 (207)
T ss_dssp ECCSCHHHHHHHHHH-HGGGCSEE---------EECHHHHHHHCTHHHHHHHHHSTTSEEEEEEEECSC-HHH-HHHHHH
T ss_pred eCCCCHHHHHHHHHH-hhccCCEE---------EECcHHHHhhCHHHHHHHHHhCCCCeEEEEEEecCc-cHH-HHHHHH
Confidence 466678887766543 44588874 445543 68999999998 789884 542 444 346666
Q ss_pred HCCC--C---ch--hhHHHHHHHHHHHhcccEee
Q 013861 393 ALKM--I---DE--QRVMMESLMCLRRAGADIIL 419 (435)
Q Consensus 393 ~~G~--i---de--~~~v~Esl~~ikRAGAd~Ii 419 (435)
+.|. + .+ +..+-+.+..+++.|..+-+
T Consensus 75 ~~Gad~v~vh~~~~~~~~~~~~~~~~~~g~~~gv 108 (207)
T 3ajx_A 75 KAGADLVTVLGSADDSTIAGAVKAAQAHNKGVVV 108 (207)
T ss_dssp HTTCSEEEEETTSCHHHHHHHHHHHHHHTCEEEE
T ss_pred hCCCCEEEEeccCChHHHHHHHHHHHHcCCceEE
Confidence 6653 1 11 13444555666666777633
No 297
>3qvq_A Phosphodiesterase OLEI02445; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta hydrolase, hydrolase; HET: MSE G3P; 1.60A {Oleispira antarctica}
Probab=44.43 E-value=39 Score=30.91 Aligned_cols=64 Identities=8% Similarity=0.165 Sum_probs=45.4
Q ss_pred ccccEEecccCCCcccCCCchHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEeeh
Q 013861 341 EGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILT 420 (435)
Q Consensus 341 EGADilM~~~~~~~VKPal~YLDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G~ide~~~v~Esl~~ikRAGAd~IiT 420 (435)
-|++.+- +.-...--+.|+.+++ .+++|.+|-| |.. |.+..+.+.|+|.|||
T Consensus 186 ~~~~~i~-------~~~~~~~~~~v~~~~~-~G~~v~~WTv----------------n~~----~~~~~l~~~GVdgIiT 237 (252)
T 3qvq_A 186 LDCAGLH-------IHQSFFDVQQVSDIKA-AGYKVLAFTI----------------NDE----SLALKLYNQGLDAVFS 237 (252)
T ss_dssp HTCSEEE-------EEGGGCCHHHHHHHHH-TTCEEEEECC----------------CCH----HHHHHHHHTTCCEEEE
T ss_pred cCCeEEe-------cchhhCCHHHHHHHHH-CCCEEEEEcC----------------CCH----HHHHHHHHcCCCEEEe
Confidence 4778776 3222223467777765 5899999987 332 3445667789999999
Q ss_pred hcHHHHHHHHhc
Q 013861 421 YFALQAARCLCG 432 (435)
Q Consensus 421 YfA~~~a~~L~~ 432 (435)
-+-..+.++|.+
T Consensus 238 D~P~~~~~~l~~ 249 (252)
T 3qvq_A 238 DYPQKIQSAIDS 249 (252)
T ss_dssp SSHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 999999888865
No 298
>1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A*
Probab=44.07 E-value=36 Score=32.83 Aligned_cols=65 Identities=17% Similarity=0.178 Sum_probs=38.0
Q ss_pred HHHHHhccccc--ccEEecccCCCcccCCCchHHHHHHHHhhCC-CCeEEEEechHHHHHHHHHHCC-CCchhhHHHHHH
Q 013861 332 LVEAQADESEG--ADILLFSVLGSQVKPGLPYLDVIRLLRDKYP-LPIAAYQVSGEYSMIKAGGALK-MIDEQRVMMESL 407 (435)
Q Consensus 332 lre~~~D~~EG--ADilM~~~~~~~VKPal~YLDIIr~vk~~~~-lPvaaYqVSGEYaMikaAa~~G-~ide~~~v~Esl 407 (435)
++.+..=++.| +|++-+... +=-| ...+|+|+.+|+.++ .||.. | ..+ .|..
T Consensus 108 ~~~a~~~~~~g~~~~~i~i~~~--~G~~-~~~~~~i~~lr~~~~~~~vi~----------------G~v~s-----~e~A 163 (336)
T 1ypf_A 108 YEFVQQLAAEHLTPEYITIDIA--HGHS-NAVINMIQHIKKHLPESFVIA----------------GNVGT-----PEAV 163 (336)
T ss_dssp HHHHHHHHHTTCCCSEEEEECS--SCCS-HHHHHHHHHHHHHCTTSEEEE----------------EEECS-----HHHH
T ss_pred HHHHHHHHhcCCCCCEEEEECC--CCCc-HHHHHHHHHHHHhCCCCEEEE----------------CCcCC-----HHHH
Confidence 34444445678 999863221 1011 256899999999996 55542 2 222 2344
Q ss_pred HHHHHhcccEeeh
Q 013861 408 MCLRRAGADIILT 420 (435)
Q Consensus 408 ~~ikRAGAd~IiT 420 (435)
..+..+|||.|+.
T Consensus 164 ~~a~~aGad~Ivv 176 (336)
T 1ypf_A 164 RELENAGADATKV 176 (336)
T ss_dssp HHHHHHTCSEEEE
T ss_pred HHHHHcCCCEEEE
Confidence 5566778888765
No 299
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=43.86 E-value=2.1e+02 Score=26.90 Aligned_cols=98 Identities=14% Similarity=0.140 Sum_probs=55.0
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCC-CCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCC
Q 013861 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDN-GLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVRED 236 (435)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~-g~v~raIr~iK~~~Pdl~IitDVcLc~YTshGHcGIv~e~ 236 (435)
.|.++++.+.+.|+.-+-+ =+ .| | -|-|| .+=+..|+.||+.+|++.+-++.-. . +
T Consensus 41 ~L~~~i~~l~~~G~d~lHv-DV-----mD--g--~FVpnit~G~~~v~~lr~~~p~~~ldvHLmv--~---------~-- 97 (246)
T 3inp_A 41 RLGDDVKAVLAAGADNIHF-DV-----MD--N--HYVPNLTFGPMVLKALRDYGITAGMDVHLMV--K---------P-- 97 (246)
T ss_dssp GHHHHHHHHHHTTCCCEEE-EE-----EB--S--SSSSCBCCCHHHHHHHHHHTCCSCEEEEEEC--S---------S--
T ss_pred hHHHHHHHHHHcCCCEEEE-Ee-----cC--C--CcCcchhcCHHHHHHHHHhCCCCeEEEEEee--C---------C--
Confidence 3899999999999986554 11 11 1 11111 1224789999999988766444331 1 1
Q ss_pred CccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCCCcee
Q 013861 237 GVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSI 290 (435)
Q Consensus 237 g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMMDGrVgAIR~aLD~~Gf~~v~I 290 (435)
- +.+.+. +++||||+|.--.--.-.+...-+...+.|. +++|
T Consensus 98 p--------~~~i~~---~~~aGAd~itvH~Ea~~~~~~~i~~ir~~G~-k~Gv 139 (246)
T 3inp_A 98 V--------DALIES---FAKAGATSIVFHPEASEHIDRSLQLIKSFGI-QAGL 139 (246)
T ss_dssp C--------HHHHHH---HHHHTCSEEEECGGGCSCHHHHHHHHHTTTS-EEEE
T ss_pred H--------HHHHHH---HHHcCCCEEEEccccchhHHHHHHHHHHcCC-eEEE
Confidence 0 123333 5789999986543322234444444456675 4444
No 300
>3vgf_A Malto-oligosyltrehalose trehalohydrolase; alpha/beta barrel, alpha-amylas hydrolase; HET: GLC FLC; 2.30A {Sulfolobus solfataricus} PDB: 3vge_A* 3vgd_A* 3vgb_A* 1eh9_A* 3vgh_A* 3vgg_A* 1eha_A
Probab=43.85 E-value=1.4e+02 Score=30.75 Aligned_cols=121 Identities=15% Similarity=0.208 Sum_probs=76.4
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCC------------HHHHHHHHHHHCCCeEEEeeecccCCC
Q 013861 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGL------------VPRTIWLLKDRYPDLVIYTDVALDPYS 225 (435)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~------------v~raIr~iK~~~Pdl~IitDVcLc~YT 225 (435)
++.+.+..+.++|+++|-|-|+-+- ....+..|++-++ +.+.|+.++++ .|-||.|+.+.+..
T Consensus 120 ~~~~~l~~l~~lG~~~v~l~Pi~~~---~~~~~~GY~~~~~~~~~~~~Gt~~d~~~lv~~~h~~--Gi~VilD~V~NH~~ 194 (558)
T 3vgf_A 120 GVIRKLDYLKDLGITAIEIMPIAQF---PGKRDWGYDGVYLYAVQNSYGGPEGFRKLVDEAHKK--GLGVILDVVYNHVG 194 (558)
T ss_dssp HHHHTHHHHHHHTCCEEEECCCEEC---SSSCCCSTTCCEEEEECGGGTHHHHHHHHHHHHHHT--TCEEEEEECCSCCC
T ss_pred HHHHHHHHHHHcCCcEEEECCcccC---CCCCCcCcccccccccccccCCHHHHHHHHHHHHHc--CCEEEEEEeecccc
Confidence 6888999999999999999885221 1112234444332 34566666665 69999999886554
Q ss_pred CCCc----------------ce-eecCCCccccHHHHHHHHHHHHHHH-HcCCCee---cCCCCCC----chHHHHHHHH
Q 013861 226 SDGH----------------DG-IVREDGVIMNDETVHQLCKQAVSQA-RAGADVV---SPSDMMD----GRVGAIRAAL 280 (435)
Q Consensus 226 shGH----------------cG-Iv~e~g~IdND~Tv~~Lak~Avs~A-~AGADiV---APSDMMD----GrVgAIR~aL 280 (435)
.+++ || .++-++ -.|.+..+.|...+.-.. +.|+|-+ ++..|.| --+..|++.+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~g~~~n~~~-~~~~~v~~~l~~~~~~w~~~~gvDGfR~D~~~~~~~~~~~~f~~~l~~~~ 273 (558)
T 3vgf_A 195 PEGNYMVKLGPYFSQKYKTPWGLTFNFDD-AESDEVRKFILENVEYWIKEYNVDGFRLSAVHAIIDTSPKHILEEIADVV 273 (558)
T ss_dssp SSSCCGGGTSCCEEEEEEETTEEEECSSS-TTHHHHHHHHHHHHHHHHHHHCCCEEEESCGGGCCCCSSSCHHHHHHHHH
T ss_pred CCCCcccccCCccCCCCCCCCCCcccCCC-CCCHHHHHHHHHHHHHHHHHhCCCEEEEecccccccccHHHHHHHHHHHH
Confidence 3321 11 121111 125577777888888888 5799865 4445544 3578888888
Q ss_pred HHCC
Q 013861 281 DAEG 284 (435)
Q Consensus 281 D~~G 284 (435)
++..
T Consensus 274 ~~~~ 277 (558)
T 3vgf_A 274 HKYN 277 (558)
T ss_dssp HHTT
T ss_pred hhcC
Confidence 8753
No 301
>3uw2_A Phosphoglucomutase/phosphomannomutase family PROT; structural genomics, seattle structural genomics center for infectious disease; 1.95A {Burkholderia thailandensis}
Probab=43.85 E-value=1.7e+02 Score=29.82 Aligned_cols=91 Identities=21% Similarity=0.269 Sum_probs=59.7
Q ss_pred HHHcCCCeEEEeecCCCCCCCcccCcCcCCC--CCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCC-ccccH
Q 013861 166 ARDVGVNSVVLFPKVPDALKSPTGDEAYNDN--GLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDG-VIMND 242 (435)
Q Consensus 166 ~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~--g~v~raIr~iK~~~Pdl~IitDVcLc~YTshGHcGIv~e~g-~IdND 242 (435)
+.++|++-+.++.. ||.. .....-||. .-+..+++..|+.--|+.|..|---| .||+++++| .|+-|
T Consensus 214 l~~lG~~v~~~~~~-pDg~---Fp~~~p~P~~~~~l~~l~~~v~~~~aDlgia~DgDaD------R~~vvd~~G~~i~gd 283 (485)
T 3uw2_A 214 FKALGCELVELFTD-IDGN---FPNHHPDPAHPENLQDVIAKLKATDAEIGFAFDGDGD------RLGVVTKDGQIIYPD 283 (485)
T ss_dssp HHHTTCCEEEESCS-CCTT---CCSSCSCTTSGGGGHHHHHHHHHSSCCEEEEECTTSS------CEEEECTTSCBCCHH
T ss_pred HHHcCCeEEEecCc-cCCC---CCCCCcCCCCHHHHHHHHHHHHhhCCCEEEEECCCCC------eEEEEeCCCceECHH
Confidence 45789988877764 4321 111222332 23567788888888899999985333 689998776 55667
Q ss_pred HHHHHHHHHHHHHHHcCCCeecCCC
Q 013861 243 ETVHQLCKQAVSQARAGADVVSPSD 267 (435)
Q Consensus 243 ~Tv~~Lak~Avs~A~AGADiVAPSD 267 (435)
..+..+++.-+.. .-|..||.|..
T Consensus 284 ~~~alla~~ll~~-~~~~~vv~~v~ 307 (485)
T 3uw2_A 284 RQLMLFAEEVLSR-NPGAQIIYDVK 307 (485)
T ss_dssp HHHHHHHHHHHHH-STTCEEEEETT
T ss_pred HHHHHHHHHHHHh-CCCCeEEEEeC
Confidence 7777777776654 34777887743
No 302
>1bd3_D Uprtase, uracil phosphoribosyltransferase; glycosyltransferase; 1.93A {Toxoplasma gondii} SCOP: c.61.1.1 PDB: 1bd4_D 1jlr_A* 1jls_B* 1upf_D 1upu_D*
Probab=43.55 E-value=31 Score=32.74 Aligned_cols=49 Identities=18% Similarity=0.351 Sum_probs=38.3
Q ss_pred hHHHHHHHHHHcCC--CeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCC
Q 013861 158 GLVQEVAKARDVGV--NSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPY 224 (435)
Q Consensus 158 ~l~~~v~~~~~~GI--~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~Y 224 (435)
.+..-++.+.+.|. ++|.+.-.|- -+.+++.|.+.|||+.|+|. ++|+-
T Consensus 171 T~~~ai~~L~~~G~~p~~I~~~~lva-----------------ap~g~~~l~~~~p~v~I~ta-~ID~~ 221 (243)
T 1bd3_D 171 SVCKAIEVLLRLGVKEERIIFVNILA-----------------APQGIERVFKEYPKVRMVTA-AVDIC 221 (243)
T ss_dssp HHHHHHHHHHHHTCCGGGEEEEEEEE-----------------CHHHHHHHHHHCTTSEEEEE-EECSE
T ss_pred HHHHHHHHHHHcCCCcceEEEEEEEe-----------------CHHHHHHHHHHCCCCEEEEE-EecCC
Confidence 58888999999999 8887765432 14589999999999999987 55543
No 303
>3k13_A 5-methyltetrahydrofolate-homocysteine methyltrans; 5-methyltetrahydrofolate,methyltransferase, TIM barrel, STRU genomics, PSI-2; HET: MSE THH GOL; 2.00A {Bacteroides thetaiotaomicron}
Probab=43.51 E-value=52 Score=32.06 Aligned_cols=94 Identities=19% Similarity=0.339 Sum_probs=60.6
Q ss_pred CCHHHHHHHHHhcccccccEEecccCCCcccCCC----chHHHHHHHHhhCCCCeEEEEechHHHHHHHHHH--CC--CC
Q 013861 326 ANYREALVEAQADESEGADILLFSVLGSQVKPGL----PYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGA--LK--MI 397 (435)
Q Consensus 326 ~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal----~YLDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~--~G--~i 397 (435)
.+.++|+..++.-+++|||||=... |..-.+.. -.+.+|+.+++..++|+..=- =....+++|.+ +| ++
T Consensus 34 ~~~~~a~~~A~~~v~~GAdiIDIg~-g~~~v~~~eem~rvv~~i~~~~~~~~vpisIDT--~~~~V~eaaL~~~~Ga~iI 110 (300)
T 3k13_A 34 KKYDEALSIARQQVEDGALVIDVNM-DDGLLDARTEMTTFLNLIMSEPEIARVPVMIDS--SKWEVIEAGLKCLQGKSIV 110 (300)
T ss_dssp TCHHHHHHHHHHHHHTTCSEEEEEC-CCTTSCHHHHHHHHHHHHHTCHHHHTSCEEEEC--SCHHHHHHHHHHCSSCCEE
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECC-CCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEeC--CCHHHHHHHHHhcCCCCEE
Confidence 3678999999999999999998322 21111100 034556555566789987543 35567788887 45 32
Q ss_pred ch------hhHHHHHHHHHHHhcccEeehhc
Q 013861 398 DE------QRVMMESLMCLRRAGADIILTYF 422 (435)
Q Consensus 398 de------~~~v~Esl~~ikRAGAd~IiTYf 422 (435)
+. +.-+.+.+.-+++.||-+|+-.+
T Consensus 111 NdIs~~~~d~~~~~~~~l~a~~ga~vV~mh~ 141 (300)
T 3k13_A 111 NSISLKEGEEVFLEHARIIKQYGAATVVMAF 141 (300)
T ss_dssp EEECSTTCHHHHHHHHHHHHHHTCEEEEESE
T ss_pred EeCCcccCChhHHHHHHHHHHhCCeEEEEee
Confidence 21 22344667778889999998776
No 304
>2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A
Probab=43.28 E-value=1.7e+02 Score=27.51 Aligned_cols=109 Identities=17% Similarity=0.082 Sum_probs=65.7
Q ss_pred eechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcce
Q 013861 152 RLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDG 231 (435)
Q Consensus 152 r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTshGHcG 231 (435)
++.++ .+.+.++.+++.|+..+++.|. +|+...=..-=-.+.++...+.... ||+
T Consensus 15 ~iD~~-~l~~lv~~li~~Gv~gl~v~Gt--------tGE~~~Ls~~Er~~v~~~~~~~~~g--vi~-------------- 69 (286)
T 2r91_A 15 RLDPE-LFANHVKNITSKGVDVVFVAGT--------TGLGPALSLQEKMELTDAATSAARR--VIV-------------- 69 (286)
T ss_dssp EECHH-HHHHHHHHHHHTTCCEEEETST--------TTTGGGSCHHHHHHHHHHHHHHCSS--EEE--------------
T ss_pred ccCHH-HHHHHHHHHHHCCCCEEEECcc--------ccChhhCCHHHHHHHHHHHHHHhCC--EEE--------------
Confidence 34454 5889999999999999999996 3433322222234566666666544 222
Q ss_pred eecCCCccccHHHHHHHHHHHHHHHHcCCCee---cCCC----CCCchHHHHHHHHHHCCCCCceeechhh
Q 013861 232 IVREDGVIMNDETVHQLCKQAVSQARAGADVV---SPSD----MMDGRVGAIRAALDAEGFQHVSIMSYTA 295 (435)
Q Consensus 232 Iv~e~g~IdND~Tv~~Lak~Avs~A~AGADiV---APSD----MMDGrVgAIR~aLD~~Gf~~v~IMSYSa 295 (435)
.-|...-.+|++ .+-..+++|||.| .|.= --+|-+...++..++. +++||=|-.
T Consensus 70 ---Gvg~~~t~~ai~----la~~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~---~lPiilYn~ 130 (286)
T 2r91_A 70 ---QVASLNADEAIA----LAKYAESRGAEAVASLPPYYFPRLSERQIAKYFRDLCSAV---SIPVFLYNY 130 (286)
T ss_dssp ---ECCCSSHHHHHH----HHHHHHHTTCSEEEECCSCSSTTCCHHHHHHHHHHHHHHC---SSCEEEEEC
T ss_pred ---eeCCCCHHHHHH----HHHHHHhcCCCEEEEcCCcCCCCCCHHHHHHHHHHHHHhc---CCCEEEEeC
Confidence 112223345543 3334467899965 4432 1267777778777765 578988853
No 305
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=43.19 E-value=52 Score=27.46 Aligned_cols=65 Identities=17% Similarity=-0.015 Sum_probs=47.7
Q ss_pred CHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhC-CCCeEEEEechHHHHHHHHHHCCCCc
Q 013861 327 NYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMID 398 (435)
Q Consensus 327 N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~-~lPvaaYqVSGEYaMikaAa~~G~id 398 (435)
|..||+.... ++.-|+|+... -=|.+.=+++++.+|+.. .+||...--..+......|.+.|..|
T Consensus 39 ~~~~al~~~~---~~~~dlvl~D~----~lp~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~a~~~Ga~~ 104 (184)
T 3rqi_A 39 NKDEALKLAG---AEKFEFITVXL----HLGNDSGLSLIAPLCDLQPDARILVLTGYASIATAVQAVKDGADN 104 (184)
T ss_dssp SHHHHHHHHT---TSCCSEEEECS----EETTEESHHHHHHHHHHCTTCEEEEEESSCCHHHHHHHHHHTCSE
T ss_pred CHHHHHHHHh---hCCCCEEEEec----cCCCccHHHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHHhCHHH
Confidence 6777776653 34578888111 127777899999999876 59999888777788788888888754
No 306
>2qgy_A Enolase from the environmental genome shotgun sequencing of the sargasso SEA; structural genomics, unknown function, PSI-2; 1.80A {Environmental sample}
Probab=43.06 E-value=1.4e+02 Score=29.20 Aligned_cols=114 Identities=9% Similarity=0.097 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHcCCCeecCCCCCC------chHHHHHHHHHHCCCCCceeechhhhhcccccccchhhhcCCCCCCC
Q 013861 244 TVHQLCKQAVSQARAGADVVSPSDMMD------GRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGD 317 (435)
Q Consensus 244 Tv~~Lak~Avs~A~AGADiVAPSDMMD------GrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRdA~~Sap~fgD 317 (435)
+.+.+++.|....++|.+.|=----.| -+|.+||+++ | .++.|| .+....|
T Consensus 149 ~~~~~~~~a~~~~~~Gf~~vKik~g~~~~~~~~e~v~avR~a~---G-~d~~l~---vDan~~~---------------- 205 (391)
T 2qgy_A 149 DTNDYLRQIEKFYGKKYGGIKIYPMLDSLSISIQFVEKVREIV---G-DELPLM---LDLAVPE---------------- 205 (391)
T ss_dssp CHHHHHHHHHHHHHTTCSCEEECCCCSSHHHHHHHHHHHHHHH---C-SSSCEE---EECCCCS----------------
T ss_pred CHHHHHHHHHHHHHcCCCEEEEccCCChHHHHHHHHHHHHHHh---C-CCCEEE---EEcCCCC----------------
Q ss_pred ccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCc--hHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCC
Q 013861 318 KKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLP--YLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALK 395 (435)
Q Consensus 318 RktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~--YLDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G 395 (435)
+..||++-+.. +++ .++.+ +.=-++ .++-.+++++++++||++=.---....++...+.|
T Consensus 206 ---------~~~~a~~~~~~-l~~-~~i~~-------iEqP~~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~ 267 (391)
T 2qgy_A 206 ---------DLDQTKSFLKE-VSS-FNPYW-------IEEPVDGENISLLTEIKNTFNMKVVTGEKQSGLVHFRELISRN 267 (391)
T ss_dssp ---------CHHHHHHHHHH-HGG-GCCSE-------EECSSCTTCHHHHHHHHHHCSSCEEECTTCCSHHHHHHHHHTT
T ss_pred ---------CHHHHHHHHHH-HHh-cCCCe-------EeCCCChhhHHHHHHHHhhCCCCEEEcCCcCCHHHHHHHHHcC
Q ss_pred CCc
Q 013861 396 MID 398 (435)
Q Consensus 396 ~id 398 (435)
.+|
T Consensus 268 ~~d 270 (391)
T 2qgy_A 268 AAD 270 (391)
T ss_dssp CCS
T ss_pred CCC
No 307
>1w6t_A Enolase; bacterial infection, surface protein, moonlighting protein, glycolysis, phosphopyruvate hydratase, lyase; HET: 2PE; 2.10A {Streptococcus pneumoniae} SCOP: c.1.11.1 d.54.1.1 PDB: 1iyx_A
Probab=42.98 E-value=23 Score=35.78 Aligned_cols=127 Identities=17% Similarity=0.262 Sum_probs=76.9
Q ss_pred chHHHHHHHHHHCCCC---CceeechhhhhcccccccchhhhcCCCCCCCccccCCC--C------CCHHHHHHHHHhcc
Q 013861 271 GRVGAIRAALDAEGFQ---HVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMN--P------ANYREALVEAQADE 339 (435)
Q Consensus 271 GrVgAIR~aLD~~Gf~---~v~IMSYSaKyASafYGPFRdA~~Sap~fgDRktYQmd--p------~N~~EAlre~~~D~ 339 (435)
-+|.+||+++.+.||. ++.||-=+| ||.||-. ....|.++ - -+..||++-. ..+
T Consensus 227 ~~l~avreav~~agy~pG~dv~L~vDaa--as~~~~~------------~n~~y~~~~n~~~~~~~~t~~eai~~~-~~l 291 (444)
T 1w6t_A 227 DGVETILAAIEAAGYVPGKDVFLGFDCA--SSEFYDK------------ERKVYDYTKFEGEGAAVRTSAEQIDYL-EEL 291 (444)
T ss_dssp HHHHHHHHHHHHTTCCBTTTBEEEEECC--GGGGBC--------------CCCEETHHHHCTTCCEECHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHhccCCCCCcEEEEEcc--chhcccc------------cCCceeeccccCcccCCCCHHHHHHHH-HHH
Confidence 6799999999999984 588886554 6888821 01235441 1 1456766544 334
Q ss_pred cccccEEecccCCCcccCCCc--hHHHHHHHHhhC--CCCeEEEEe-chHHHHHHHHHHCCCCch-----hh--HHHHHH
Q 013861 340 SEGADILLFSVLGSQVKPGLP--YLDVIRLLRDKY--PLPIAAYQV-SGEYSMIKAGGALKMIDE-----QR--VMMESL 407 (435)
Q Consensus 340 ~EGADilM~~~~~~~VKPal~--YLDIIr~vk~~~--~lPvaaYqV-SGEYaMikaAa~~G~ide-----~~--~v~Esl 407 (435)
.+..++.+ +.=-++ -++=.+++++++ ++||++=.. --.-..++.+.++|.+|- -+ -+.|++
T Consensus 292 ~~~~~i~~-------iEePl~~~d~~~~~~l~~~~~~~ipIa~dE~~~~~~~~~~~~i~~~a~d~i~ik~~~~GGitea~ 364 (444)
T 1w6t_A 292 VNKYPIIT-------IEDGMDENDWDGWKALTERLGKKVQLVGDDFFVTNTDYLARGIQEGAANSILIKVNQIGTLTETF 364 (444)
T ss_dssp HHHSCEEE-------EESCSCTTCHHHHHHHHHHHTTTSEEEESTTTTTCHHHHHHHHHHTCCSEEEECHHHHCSHHHHH
T ss_pred HHhCCcEE-------EECCCChhhHHHHHHHHHhhCCCCeEEeCCcccCCHHHHHHHHHcCCCCEEEEcccccCCHHHHH
Confidence 44467777 543334 367788999988 899986431 111234555566666553 22 255665
Q ss_pred HH---HHHhcccEee
Q 013861 408 MC---LRRAGADIIL 419 (435)
Q Consensus 408 ~~---ikRAGAd~Ii 419 (435)
.. .+.+|-.+++
T Consensus 365 ~ia~lA~~~g~~v~~ 379 (444)
T 1w6t_A 365 EAIEMAKEAGYTAVV 379 (444)
T ss_dssp HHHHHHHHTTCEEEE
T ss_pred HHHHHHHHCCCeEEe
Confidence 54 4456777777
No 308
>2yzr_A Pyridoxal biosynthesis lyase PDXS; redox protein, pyridoxal phosphate, structural genomi NPPSFA; 2.30A {Methanocaldococcus jannaschii}
Probab=42.95 E-value=28 Score=34.83 Aligned_cols=79 Identities=24% Similarity=0.305 Sum_probs=53.1
Q ss_pred cccccEEecccCC---Cccc-----CCCchHHHHHHHHhhCCCCeEEEEech---HHHHHHHHHHCCCCchh--------
Q 013861 340 SEGADILLFSVLG---SQVK-----PGLPYLDVIRLLRDKYPLPIAAYQVSG---EYSMIKAGGALKMIDEQ-------- 400 (435)
Q Consensus 340 ~EGADilM~~~~~---~~VK-----Pal~YLDIIr~vk~~~~lPvaaYqVSG---EYaMikaAa~~G~ide~-------- 400 (435)
+.||+.|| +|- ..++ --|...+.|+++++..++||-+=-=-| ||..+.+ .-.-++|+.
T Consensus 35 ~aGA~aI~--~l~~v~~d~~~~~G~arm~~p~~i~~I~~av~iPV~~K~rig~~~e~qilea-~GaD~Id~s~~l~p~d~ 111 (330)
T 2yzr_A 35 EAGAVAVM--ALERVPADIRAAGGVARMSDPALIEEIMDAVSIPVMAKCRIGHTTEALVLEA-IGVDMIDESEVLTQADP 111 (330)
T ss_dssp HHTCSEEE--ECSSCHHHHC--CCCCCCCCHHHHHHHHHHCSSCEEEEEETTCHHHHHHHHH-TTCSEEEEETTSCCSCS
T ss_pred HcCCCEEE--ecCCccccccCCcchhhcCCHHHHHHHHHhcCCCeEEEEeecchHHHHHHHH-cCCCEEehhccCCHHHH
Confidence 46999998 220 0000 024478999999999999998765544 5666665 333444431
Q ss_pred --h---------------HHHHHHHHHHHhcccEeehhc
Q 013861 401 --R---------------VMMESLMCLRRAGADIILTYF 422 (435)
Q Consensus 401 --~---------------~v~Esl~~ikRAGAd~IiTYf 422 (435)
. -+-|.+..+ .+||++|-|..
T Consensus 112 ~~~i~k~~~~~~~~~~a~~lgea~r~~-~~Ga~~i~t~g 149 (330)
T 2yzr_A 112 FFHIYKKKFNVPFVCGARNLGEAVRRI-WEGAAMIRTKG 149 (330)
T ss_dssp SCCCCGGGCSSCEEEECSSHHHHHHHH-HHTCSEEEECC
T ss_pred HHHhhhhhcccchhhccccHHHHHHHH-hcCcceeeccC
Confidence 1 267888888 89999998887
No 309
>2o55_A Putative glycerophosphodiester phosphodiesterase; beta barrel, structural genomics, protein structure initiati 2; 2.81A {Galdieria sulphuraria}
Probab=42.88 E-value=43 Score=30.55 Aligned_cols=68 Identities=10% Similarity=0.048 Sum_probs=46.6
Q ss_pred ccccEEecccCCCcccCCCchHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEeeh
Q 013861 341 EGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILT 420 (435)
Q Consensus 341 EGADilM~~~~~~~VKPal~YLDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G~ide~~~v~Esl~~ikRAGAd~IiT 420 (435)
-|+|.+- +.-...--+.|+.+++ .+++|.+|-|-+ +|.+. |.+..+.+.|+|.|||
T Consensus 188 ~~~~~v~-------~~~~~~~~~~v~~~~~-~G~~v~~wTv~~-------------~~n~~---~~~~~l~~~GvdgI~T 243 (258)
T 2o55_A 188 GDANGVS-------MLFHYLTKEQVCTAHE-KGLSVTVWMPWI-------------FDDSE---EDWKKCLELQVDLICS 243 (258)
T ss_dssp TTCSEEE-------EEGGGCCHHHHHHHHH-TTCEEEEECCTT-------------CCCCH---HHHHHHHHHTCSEEEE
T ss_pred cCCeEEe-------cChhhcCHHHHHHHHH-CCCEEEEeeCCC-------------CCCCH---HHHHHHHHcCCCEEEe
Confidence 5788776 2222222467888775 689999999832 22222 3444566789999999
Q ss_pred hcHHHHHHHHhc
Q 013861 421 YFALQAARCLCG 432 (435)
Q Consensus 421 YfA~~~a~~L~~ 432 (435)
-+-..+.++|++
T Consensus 244 D~p~~~~~~l~~ 255 (258)
T 2o55_A 244 NYPFGLMNFLSN 255 (258)
T ss_dssp SCHHHHHHHHTC
T ss_pred CCHHHHHHHHHH
Confidence 999888888863
No 310
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=42.46 E-value=61 Score=26.41 Aligned_cols=64 Identities=16% Similarity=0.158 Sum_probs=41.5
Q ss_pred CCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhCCCCeEEEEechHH--HHHHHHHHCCC
Q 013861 326 ANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEY--SMIKAGGALKM 396 (435)
Q Consensus 326 ~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~~lPvaaYqVSGEY--aMikaAa~~G~ 396 (435)
.+..||+..... +..|+|+... -=|.+.=+++++.+|+..+.|+...--..+. ..+..+.+.|.
T Consensus 58 ~~~~~al~~l~~---~~~dlvilD~----~l~~~~g~~l~~~lr~~~~~~ii~~s~~~~~~~~~~~~~~~~ga 123 (164)
T 3t8y_A 58 KDGLEAVEKAIE---LKPDVITMDI----EMPNLNGIEALKLIMKKAPTRVIMVSSLTEEGAAITIEALRNGA 123 (164)
T ss_dssp SSHHHHHHHHHH---HCCSEEEECS----SCSSSCHHHHHHHHHHHSCCEEEEEESSCCTTCHHHHHHHHTTC
T ss_pred CCHHHHHHHhcc---CCCCEEEEeC----CCCCCCHHHHHHHHHhcCCceEEEEecCCccchHHHHHHHHcCc
Confidence 477788776653 3589998211 1266777999999999888888776553332 23444445554
No 311
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=42.32 E-value=53 Score=31.29 Aligned_cols=58 Identities=17% Similarity=0.198 Sum_probs=36.8
Q ss_pred chHHHHHHHHhh-CCCCeEEE---Ee---chHHHHHHHHHHCCCC-----ch--hhHHHHHHHHHHHhcccEe
Q 013861 360 PYLDVIRLLRDK-YPLPIAAY---QV---SGEYSMIKAGGALKMI-----DE--QRVMMESLMCLRRAGADII 418 (435)
Q Consensus 360 ~YLDIIr~vk~~-~~lPvaaY---qV---SGEYaMikaAa~~G~i-----de--~~~v~Esl~~ikRAGAd~I 418 (435)
-++|+|+++|++ .++|+... +. -|.-..++.++++|.= |+ ++ ..|....+++.|-+.|
T Consensus 81 ~~~~~v~~ir~~~~~~Pivlm~Y~npv~~~g~e~f~~~~~~aGvdgvii~Dlp~ee-~~~~~~~~~~~gl~~i 152 (267)
T 3vnd_A 81 DCFDIITKVRAQHPDMPIGLLLYANLVFANGIDEFYTKAQAAGVDSVLIADVPVEE-SAPFSKAAKAHGIAPI 152 (267)
T ss_dssp HHHHHHHHHHHHCTTCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTSCGGG-CHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHhcCCCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEeCCCCHhh-HHHHHHHHHHcCCeEE
Confidence 348999999998 78998762 32 2444456666666631 11 22 4566677777787765
No 312
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=42.28 E-value=95 Score=23.94 Aligned_cols=64 Identities=16% Similarity=0.179 Sum_probs=40.6
Q ss_pred CHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHh--h-CCCCeEEEEechHHHHHH-HHHHCCCC
Q 013861 327 NYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRD--K-YPLPIAAYQVSGEYSMIK-AGGALKMI 397 (435)
Q Consensus 327 N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~--~-~~lPvaaYqVSGEYaMik-aAa~~G~i 397 (435)
|..||+..... +.-|+|+... --|.+.-+++++.+|+ . ..+|+...--..+..... .+.+.|..
T Consensus 38 ~~~~a~~~l~~---~~~dlvi~d~----~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~~g~~ 105 (140)
T 3grc_A 38 SAAQALEQVAR---RPYAAMTVDL----NLPDQDGVSLIRALRRDSRTRDLAIVVVSANAREGELEFNSQPLAVS 105 (140)
T ss_dssp SHHHHHHHHHH---SCCSEEEECS----CCSSSCHHHHHHHHHTSGGGTTCEEEEECTTHHHHHHHHCCTTTCCC
T ss_pred CHHHHHHHHHh---CCCCEEEEeC----CCCCCCHHHHHHHHHhCcccCCCCEEEEecCCChHHHHHHhhhcCCC
Confidence 56777766643 4589998211 1266778999999997 3 368988876555444444 44455543
No 313
>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2
Probab=42.17 E-value=27 Score=32.48 Aligned_cols=59 Identities=22% Similarity=0.334 Sum_probs=0.0
Q ss_pred HHHhcccc--cccEE---ecccCCCcccC---CCch----HHHHHHHHhhC-CCCeEEEEechHHHHHHHHHHCCCCchh
Q 013861 334 EAQADESE--GADIL---LFSVLGSQVKP---GLPY----LDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMIDEQ 400 (435)
Q Consensus 334 e~~~D~~E--GADil---M~~~~~~~VKP---al~Y----LDIIr~vk~~~-~lPvaaYqVSGEYaMikaAa~~G~ide~ 400 (435)
|....+.+ ++|+| - |.| +..+ ||-|+++|+.. ++++.+ -|-++.+
T Consensus 128 ~~~~~~l~~g~~D~Vlvms-------V~pGf~gq~f~~~~l~ki~~lr~~~~~~~I~V---------------dGGI~~~ 185 (227)
T 1tqx_A 128 QKLVPILDTNLINTVLVMT-------VEPGFGGQSFMHDMMGKVSFLRKKYKNLNIQV---------------DGGLNIE 185 (227)
T ss_dssp GGGHHHHTTTCCSEEEEES-------SCTTCSSCCCCGGGHHHHHHHHHHCTTCEEEE---------------ESSCCHH
T ss_pred HHHHHHhhcCCcCEEEEee-------eccCCCCcccchHHHHHHHHHHHhccCCeEEE---------------ECCCCHH
Q ss_pred hHHHHHHHHHHHhcccEee
Q 013861 401 RVMMESLMCLRRAGADIIL 419 (435)
Q Consensus 401 ~~v~Esl~~ikRAGAd~Ii 419 (435)
++..++.||||+++
T Consensus 186 -----ti~~~~~aGAd~~V 199 (227)
T 1tqx_A 186 -----TTEISASHGANIIV 199 (227)
T ss_dssp -----HHHHHHHHTCCEEE
T ss_pred -----HHHHHHHcCCCEEE
No 314
>2poz_A Putative dehydratase; octamer, structural genomics, P protein structure initiative, NEW YORK SGX research center structural genomics, nysgxrc; 2.04A {Mesorhizobium loti}
Probab=41.93 E-value=1.6e+02 Score=28.59 Aligned_cols=85 Identities=16% Similarity=0.087 Sum_probs=51.5
Q ss_pred CHHHHHHHHHhcccccccEEecccCCCccc-CCC-chHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCch-----
Q 013861 327 NYREALVEAQADESEGADILLFSVLGSQVK-PGL-PYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDE----- 399 (435)
Q Consensus 327 N~~EAlre~~~D~~EGADilM~~~~~~~VK-Pal-~YLDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G~ide----- 399 (435)
+..||++-+.. +++ .++.+ +. |-. ..++-.+++++++++||++=.---.-..++...++|.+|-
T Consensus 211 ~~~~a~~~~~~-l~~-~~i~~-------iE~P~~~~~~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~i~~~~~d~v~ik~ 281 (392)
T 2poz_A 211 TTDETIRFCRK-IGE-LDICF-------VEEPCDPFDNGALKVISEQIPLPIAVGERVYTRFGFRKIFELQACGIIQPDI 281 (392)
T ss_dssp CHHHHHHHHHH-HGG-GCEEE-------EECCSCTTCHHHHHHHHHHCSSCEEECTTCCHHHHHHHHHTTTCCSEECCCT
T ss_pred CHHHHHHHHHH-HHh-cCCCE-------EECCCCcccHHHHHHHHhhCCCCEEecCCcCCHHHHHHHHHcCCCCEEecCc
Confidence 45777666554 433 45555 32 322 2588899999999999997433223456677777777664
Q ss_pred hh--HHHHHHHHH---HHhcccEeeh
Q 013861 400 QR--VMMESLMCL---RRAGADIILT 420 (435)
Q Consensus 400 ~~--~v~Esl~~i---kRAGAd~IiT 420 (435)
-+ -+.|++... +..|-.+++.
T Consensus 282 ~~~GGit~~~~i~~~A~~~g~~~~~h 307 (392)
T 2poz_A 282 GTAGGLMETKKICAMAEAYNMRVAPH 307 (392)
T ss_dssp TTSSCHHHHHHHHHHHHTTTCEECCC
T ss_pred cccCCHHHHHHHHHHHHHcCCeEecC
Confidence 22 266665554 4456666654
No 315
>3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str}
Probab=41.91 E-value=25 Score=32.45 Aligned_cols=158 Identities=15% Similarity=0.267 Sum_probs=92.7
Q ss_pred HHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCcc
Q 013861 160 VQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVI 239 (435)
Q Consensus 160 ~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTshGHcGIv~e~g~I 239 (435)
.+.++++++...+.|.|-+. +- +-++..+..+|++-.-++|-.|. +. |-=
T Consensus 19 ~~~l~~al~s~~~~ifll~g--~i-------------~~l~~~v~~lk~~~K~v~Vh~Dl-------------i~--Gls 68 (192)
T 3kts_A 19 QKDMEKILELDLTYMVMLET--HV-------------AQLKALVKYAQAGGKKVLLHADL-------------VN--GLK 68 (192)
T ss_dssp SHHHHHHTTSSCCEEEECSE--ET-------------TTHHHHHHHHHHTTCEEEEEGGG-------------EE--TCC
T ss_pred HHHHHHHHcCCCCEEEEecC--cH-------------HHHHHHHHHHHHcCCeEEEecCc-------------hh--ccC
Confidence 35567777777666655321 11 45778888898886544443332 21 221
Q ss_pred ccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCCCceeechhhhhcccccccchhhhcCCCCCCCcc
Q 013861 240 MNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKK 319 (435)
Q Consensus 240 dND~Tv~~Lak~Avs~A~AGADiVAPSDMMDGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRdA~~Sap~fgDRk 319 (435)
.+...++.|++ .-+ |....-=++..|+.|- +.|+.-+. +
T Consensus 69 ~d~~ai~fL~~------~~~-----pdGIIsTk~~~i~~Ak-~~gL~tIq-----------------------------R 107 (192)
T 3kts_A 69 NDDYAIDFLCT------EIC-----PDGIISTRGNAIMKAK-QHKMLAIQ-----------------------------R 107 (192)
T ss_dssp CSHHHHHHHHH------TTC-----CSEEEESCHHHHHHHH-HTTCEEEE-----------------------------E
T ss_pred CcHHHHHHHHh------CCC-----CCEEEeCcHHHHHHHH-HCCCeEEE-----------------------------E
Confidence 23445666663 223 4444555777787765 55652111 1
Q ss_pred ccCCCCC---CHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCC
Q 013861 320 TYQMNPA---NYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKM 396 (435)
Q Consensus 320 tYQmdp~---N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G~ 396 (435)
-|-+|-. +.-+.+.+. ..|++= |=||.. -.+|+++++.++.|+.| -|+
T Consensus 108 ~FliDS~al~~~~~~i~~~------~PD~iE-------iLPGi~-p~iI~~i~~~~~~PiIa---------------GGl 158 (192)
T 3kts_A 108 LFMIDSSAYNKGVALIQKV------QPDCIE-------LLPGII-PEQVQKMTQKLHIPVIA---------------GGL 158 (192)
T ss_dssp EECCSHHHHHHHHHHHHHH------CCSEEE-------EECTTC-HHHHHHHHHHHCCCEEE---------------ESS
T ss_pred EEEEEcchHHHHHHHHhhc------CCCEEE-------ECCchh-HHHHHHHHHhcCCCEEE---------------ECC
Confidence 2222211 222223332 235554 558864 59999999999999987 689
Q ss_pred CchhhHHHHHHHHHHHhcccEeehh
Q 013861 397 IDEQRVMMESLMCLRRAGADIILTY 421 (435)
Q Consensus 397 ide~~~v~Esl~~ikRAGAd~IiTY 421 (435)
+..++-+.+. ..||||.|-|-
T Consensus 159 I~~~edv~~a----l~aGA~aVsTs 179 (192)
T 3kts_A 159 IETSEQVNQV----IASGAIAVTTS 179 (192)
T ss_dssp CCSHHHHHHH----HTTTEEEEEEC
T ss_pred cCCHHHHHHH----HHcCCeEEEeC
Confidence 9888666655 57899999874
No 316
>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A*
Probab=41.83 E-value=60 Score=30.36 Aligned_cols=66 Identities=9% Similarity=0.053 Sum_probs=42.3
Q ss_pred ccccc-EEecccCCCcccCCC-ch-------HHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHH
Q 013861 340 SEGAD-ILLFSVLGSQVKPGL-PY-------LDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCL 410 (435)
Q Consensus 340 ~EGAD-ilM~~~~~~~VKPal-~Y-------LDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G~ide~~~v~Esl~~i 410 (435)
+.|+| +|-... ++-..++. .| .+||+.+|+..++||..= ++.. | |.+ -+.|....+
T Consensus 117 ~~g~d~~iein~-~~P~~~g~~~~g~~~e~~~~iv~~vr~~~~~Pv~vK-i~~~-----------~-~~~-~~~~~a~~~ 181 (311)
T 1jub_A 117 ESDFSGITELNL-SCPNVPGEPQLAYDFEATEKLLKEVFTFFTKPLGVK-LPPY-----------F-DLV-HFDIMAEIL 181 (311)
T ss_dssp HSCCCSEEEEES-CCCCSSSCCCGGGCHHHHHHHHHHHTTTCCSCEEEE-ECCC-----------C-SHH-HHHHHHHHH
T ss_pred hcCCCeEEEEec-cCCCCCCcccccCCHHHHHHHHHHHHHhcCCCEEEE-ECCC-----------C-CHH-HHHHHHHHH
Confidence 46899 777443 32222332 12 589999999999999763 3322 3 333 346667788
Q ss_pred HHhcccEeeh
Q 013861 411 RRAGADIILT 420 (435)
Q Consensus 411 kRAGAd~IiT 420 (435)
.++|+|.|+.
T Consensus 182 ~~~G~d~i~v 191 (311)
T 1jub_A 182 NQFPLTYVNS 191 (311)
T ss_dssp TTSCCCEEEE
T ss_pred HHcCCcEEEe
Confidence 8899998763
No 317
>2gou_A Oxidoreductase, FMN-binding; OLD yeallow enzyme, flavoenzyme; HET: BOG FMN PE4; 1.40A {Shewanella oneidensis} PDB: 2gq8_A* 2gq9_A* 2gqa_A*
Probab=41.74 E-value=67 Score=31.57 Aligned_cols=186 Identities=18% Similarity=0.199 Sum_probs=100.3
Q ss_pred hHHHHHHHHHHcCCCeEEEeec-----------CCCCCCCcccCcCcCCCCCHHHHHHHHHHHCC-CeEEEeeecccCCC
Q 013861 158 GLVQEVAKARDVGVNSVVLFPK-----------VPDALKSPTGDEAYNDNGLVPRTIWLLKDRYP-DLVIYTDVALDPYS 225 (435)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgv-----------i~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~P-dl~IitDVcLc~YT 225 (435)
...+-++.+.+.|...|-|-+- ..+...|+.|..--|.--++.+.++.+|+..+ + -|..-+..+.+.
T Consensus 162 ~f~~aA~~a~~aGfDgVeih~a~gYLl~qFlsp~~N~R~D~yGGslenr~r~~~eiv~avr~~vg~~-pv~vris~~~~~ 240 (365)
T 2gou_A 162 DYRQAALNAMEAGFDGIELHAANGYLINQFIDSEANNRSDEYGGSLENRLRFLDEVVAALVDAIGAE-RVGVRLAPLTTL 240 (365)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCTTSHHHHHHSGGGCCCCSTTSSSHHHHTHHHHHHHHHHHHHHCGG-GEEEEECSSCCT
T ss_pred HHHHHHHHHHHcCCCEEEEecccchhHhhccCCCccCcCcccCcchhhhHHHHHHHHHHHHHHcCCC-cEEEEEcccccc
Confidence 3555566678999999999541 11234666665443444466678999999886 5 455444443321
Q ss_pred CCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCC-CCchHHHHHHHHHHCCCCCceeechhhhhccccccc
Q 013861 226 SDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDM-MDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGP 304 (435)
Q Consensus 226 shGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDM-MDGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGP 304 (435)
...| + ..+++...+.|-...++|+|.|.-|.. ++|. .++ . -.+-.-
T Consensus 241 ~~~~------~-----~~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~----------~~~---~---------~~~~~~ 287 (365)
T 2gou_A 241 NGTV------D-----ADPILTYTAAAALLNKHRIVYLHIAEVDWDDA----------PDT---P---------VSFKRA 287 (365)
T ss_dssp TSCC------C-----SSHHHHHHHHHHHHHHTTCSEEEEECCBTTBC----------CCC---C---------HHHHHH
T ss_pred CCCC------C-----CCCHHHHHHHHHHHHHcCCCEEEEeCCCcCCC----------CCc---c---------HHHHHH
Confidence 1111 1 124445555666677899999987653 2220 011 0 012223
Q ss_pred chhhhcCCCCCCCccccCCCCCCHHHHHHHHHhccccc-ccEEecccCCCcccCCCchHHHHHHHHhhCCCCeEEEEech
Q 013861 305 FREALDSNPRFGDKKTYQMNPANYREALVEAQADESEG-ADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAAYQVSG 383 (435)
Q Consensus 305 FRdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EG-ADilM~~~~~~~VKPal~YLDIIr~vk~~~~lPvaaYqVSG 383 (435)
+|++++ -|-.+.- .+ ++.+..++ +++| ||+|| +| .+.+.-=|+++++++. .|+..|.-++
T Consensus 288 i~~~~~-iPvi~~G-gi--~~~~a~~~-------l~~g~aD~V~---ig---R~~i~~P~l~~~~~~g--~~l~~~~~~~ 348 (365)
T 2gou_A 288 LREAYQ-GVLIYAG-RY--NAEKAEQA-------INDGLADMIG---FG---RPFIANPDLPERLRHG--YPLAEHVPAT 348 (365)
T ss_dssp HHHHCC-SEEEEES-SC--CHHHHHHH-------HHTTSCSEEE---CC---HHHHHCTTHHHHHHHT--CCCCCCCGGG
T ss_pred HHHHCC-CcEEEeC-CC--CHHHHHHH-------HHCCCcceeh---hc---HHHHhCchHHHHHHcC--CCCCCCchhh
Confidence 344442 2333211 12 33222222 2456 99999 22 3333344888998874 4555777776
Q ss_pred HHHHHHHHHHCCCCchh
Q 013861 384 EYSMIKAGGALKMIDEQ 400 (435)
Q Consensus 384 EYaMikaAa~~G~ide~ 400 (435)
-|. ..++|+.|..
T Consensus 349 ~y~----~~~~gy~dyp 361 (365)
T 2gou_A 349 LFG----GGEKGLTDYP 361 (365)
T ss_dssp SSS----SSSTTTTCCC
T ss_pred ccC----CCCCCCCCCc
Confidence 663 2346887753
No 318
>1icp_A OPR1, 12-oxophytodienoate reductase 1; beta-alpha-barrel, protein-FMN-PEG complex, oxidoreductase; HET: FMN 2PE; 1.90A {Solanum lycopersicum} SCOP: c.1.4.1 PDB: 1icq_A* 1ics_A* 3hgr_A* 1vji_A* 2q3r_A*
Probab=41.32 E-value=55 Score=32.34 Aligned_cols=189 Identities=11% Similarity=0.055 Sum_probs=101.8
Q ss_pred hHHHHHHHHHHcCCCeEEEeecC---------C--CCCCCcccCcCcCCCCCHHHHHHHHHHHCC-CeEEEeeecccCCC
Q 013861 158 GLVQEVAKARDVGVNSVVLFPKV---------P--DALKSPTGDEAYNDNGLVPRTIWLLKDRYP-DLVIYTDVALDPYS 225 (435)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi---------~--~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~P-dl~IitDVcLc~YT 225 (435)
...+-++.+.+.|...|-|-+-= | +...|+.|-.--|.--++.+.++.+|++++ + -|..++....+.
T Consensus 168 ~f~~AA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr~avg~~-~V~vrls~~~~~ 246 (376)
T 1icp_A 168 EFRVAARNAIEAGFDGVEIHGAHGYLIDQFMKDQVNDRSDKYGGSLENRCRFALEIVEAVANEIGSD-RVGIRISPFAHY 246 (376)
T ss_dssp HHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGG-GEEEEECTTCCT
T ss_pred HHHHHHHHHHHcCCCEEEEcCccchhhhhccCCcccCCCCccCccHHHhHHHHHHHHHHHHHHhcCC-ceEEEecccccc
Confidence 45666677889999999996520 2 223466665433333456678899999987 5 566677654331
Q ss_pred CCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCC-CchHHHHHHHHHHCCCCCceeechhhhhccccccc
Q 013861 226 SDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMM-DGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGP 304 (435)
Q Consensus 226 shGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMM-DGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGP 304 (435)
.|+- .+.+++...+.|-...++|+|.|.-|.-+ +. ++..+..-.+..-
T Consensus 247 ----~g~~-------~~~~~~~~~~la~~le~~Gvd~i~v~~~~~~~--------------------~~~~~~~~~~~~~ 295 (376)
T 1icp_A 247 ----NEAG-------DTNPTALGLYMVESLNKYDLAYCHVVEPRMKT--------------------AWEKIECTESLVP 295 (376)
T ss_dssp ----TTCC-------CSCHHHHHHHHHHHHGGGCCSEEEEECCSCCC--------------------------CCCCSHH
T ss_pred ----CCCC-------CCCCHHHHHHHHHHHHHcCCCEEEEcCCcccC--------------------CCCccccHHHHHH
Confidence 1211 12345555666667789999999765421 10 0000000123334
Q ss_pred chhhhcCCCCCCCccccCCCCCCHHHHHHHHHhccccc-ccEEecccCCCcccCCCchHHHHHHHHhhCCCCeEEEEech
Q 013861 305 FREALDSNPRFGDKKTYQMNPANYREALVEAQADESEG-ADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAAYQVSG 383 (435)
Q Consensus 305 FRdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EG-ADilM~~~~~~~VKPal~YLDIIr~vk~~~~lPvaaYqVSG 383 (435)
+|++++ -|-.+.- .+ ++ ++| .++ +++| ||+|| + -.|.+..=|+++++++. .|+..|.-+-
T Consensus 296 vr~~~~-iPvi~~G-~i--~~---~~a-~~~---l~~g~aD~V~---~---gR~~l~~P~l~~k~~~g--~~l~~~~~~~ 356 (376)
T 1icp_A 296 MRKAYK-GTFIVAG-GY--DR---EDG-NRA---LIEDRADLVA---Y---GRLFISNPDLPKRFELN--APLNKYNRDT 356 (376)
T ss_dssp HHHHCC-SCEEEES-SC--CH---HHH-HHH---HHTTSCSEEE---E---SHHHHHCTTHHHHHHHT--CCCCCCCGGG
T ss_pred HHHHcC-CCEEEeC-CC--CH---HHH-HHH---HHCCCCcEEe---e---cHHHHhCccHHHHHHcC--CCCCCCCHHH
Confidence 555553 2433211 11 22 332 222 2445 99999 2 23455555899999875 4444555444
Q ss_pred HHHHHHHHHHCCCCchh
Q 013861 384 EYSMIKAGGALKMIDEQ 400 (435)
Q Consensus 384 EYaMikaAa~~G~ide~ 400 (435)
=|. ....+|++|..
T Consensus 357 ~y~---~~~~~gy~dyp 370 (376)
T 1icp_A 357 FYT---SDPIVGYTDYP 370 (376)
T ss_dssp SSC---CCSSTTTTCSC
T ss_pred ccc---CCCCCCcccCc
Confidence 441 12245777764
No 319
>3ist_A Glutamate racemase; structural genomics, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis; HET: MSE; 1.65A {Listeria monocytogenes} PDB: 3hfr_A* 3isv_A*
Probab=40.75 E-value=52 Score=31.19 Aligned_cols=138 Identities=18% Similarity=0.209 Sum_probs=82.0
Q ss_pred HHHHHHHHCCC--eEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCC-----------
Q 013861 202 TIWLLKDRYPD--LVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDM----------- 268 (435)
Q Consensus 202 aIr~iK~~~Pd--l~IitDVcLc~YTshGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDM----------- 268 (435)
..|.|++..|+ ++-+.|.+-.|| |.-.-++=.+...+.+-.+.++|||+|.=..-
T Consensus 20 v~~~i~~~lP~~~~iy~~D~a~~PY------------G~ks~~~i~~~~~~~~~~L~~~g~~~IVIACNTa~~~al~~lr 87 (269)
T 3ist_A 20 VVREVLKQLPHEQVYYLGDTARCPY------------GPRDKEEVAKFTWEMTNFLVDRGIKMLVIACNTATAAALYDIR 87 (269)
T ss_dssp HHHHHHHHCTTCCEEEEECGGGCCC------------TTSCHHHHHHHHHHHHHHHHHTTCSEEEECCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCcEEEEeCCCCCCC------------CCCCHHHHHHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHH
Confidence 46788888995 888999999999 22233333344445555666789988742110
Q ss_pred ------CCchH-HHHHHHHHHCCCCCceeechhhhhcccccccchhhhcC--------CCCCCC-ccccCCCCCCHHHHH
Q 013861 269 ------MDGRV-GAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDS--------NPRFGD-KKTYQMNPANYREAL 332 (435)
Q Consensus 269 ------MDGrV-gAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRdA~~S--------ap~fgD-RktYQmdp~N~~EAl 332 (435)
.=|-| -+++.++...+..+|+||+=.+--.|.+|.-.=...+. .|.+-. =+.-+.+....++.+
T Consensus 88 ~~~~iPvigii~pa~~~A~~~~~~~~IGVLaT~~Ti~s~~y~~~i~~~~~~~~v~~~~~~~lV~~vE~g~~~~~~~~~~l 167 (269)
T 3ist_A 88 EKLDIPVIGVIQPGSRAALKATRNNKIGVLGTLGTVESMAYPTALKGLNRRVEVDSLACPKFVSVVESGEYKSAIAKKVV 167 (269)
T ss_dssp HHCSSCEEESHHHHHHHHHHHCSSSEEEEEECHHHHHHTHHHHHHHHHCTTCEEEEEECHHHHHHHHTTCTTSHHHHHHH
T ss_pred HhcCCCEEeecHHHHHHHHHHcCCCeEEEEeccchhhHHHHHHHHHHhCCCCEEeccCCHHHHHHHHcCCCCCHHHHHHH
Confidence 01433 37777887777789999987777777777422111110 111100 011122323456677
Q ss_pred HHHHhcc-cccccEEecccCCCc
Q 013861 333 VEAQADE-SEGADILLFSVLGSQ 354 (435)
Q Consensus 333 re~~~D~-~EGADilM~~~~~~~ 354 (435)
++....+ ++|+|.|+ ||-.
T Consensus 168 ~~~l~~l~~~g~D~iV---LGCT 187 (269)
T 3ist_A 168 AESLLPLKSTKIDTVI---LGCT 187 (269)
T ss_dssp HHHHGGGGGSCCCEEE---ECST
T ss_pred HHHHHHHHhCCCCEEE---ECCC
Confidence 7777776 46999998 5543
No 320
>1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/P initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A*
Probab=40.37 E-value=74 Score=30.41 Aligned_cols=40 Identities=20% Similarity=0.255 Sum_probs=30.2
Q ss_pred ccccccEEecccCC----------Cc---------ccCCCchHHHHHHHHhhC-CCCeEE
Q 013861 339 ESEGADILLFSVLG----------SQ---------VKPGLPYLDVIRLLRDKY-PLPIAA 378 (435)
Q Consensus 339 ~~EGADilM~~~~~----------~~---------VKPal~YLDIIr~vk~~~-~lPvaa 378 (435)
++.|+|.|..|.-| .| ..-+.+.++.|.++++.. ++||.+
T Consensus 202 ~~~G~d~I~vs~~ggt~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~v~~~~~~ipvia 261 (332)
T 1vcf_A 202 RDLPLAAVDVAGAGGTSWARVEEWVRFGEVRHPELCEIGIPTARAILEVREVLPHLPLVA 261 (332)
T ss_dssp TTSCCSEEECCCBTSCCHHHHHHTC--------CCTTCSCBHHHHHHHHHHHCSSSCEEE
T ss_pred HHcCCCEEEeCCCCCCcchhHHHhhccccchhhhHhhccccHHHHHHHHHHhcCCCeEEE
Confidence 46799999976544 23 345668899999999988 799875
No 321
>2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae}
Probab=40.21 E-value=3.2e+02 Score=28.01 Aligned_cols=179 Identities=17% Similarity=0.184 Sum_probs=91.4
Q ss_pred CCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEE--ee-ecccCC
Q 013861 148 PGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIY--TD-VALDPY 224 (435)
Q Consensus 148 PGv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~Ii--tD-VcLc~Y 224 (435)
+|..+++.+ ..++.++.+.++|+.++=.-+ |.. -|.. --..+++ -...++.|++..|+.-+. +. ..++-|
T Consensus 22 ~~~~~~~~~-dkl~Ia~~L~~~Gv~~IE~g~--~at-F~~~-~r~~~~d--~~e~l~~i~~~~~~~~l~~l~R~~N~~G~ 94 (464)
T 2nx9_A 22 LFATRLRID-DMLPIAQQLDQIGYWSLECWG--GAT-FDSC-IRFLGED--PWQRLRLLKQAMPNTPLQMLLRGQNLLGY 94 (464)
T ss_dssp HSTTCCCGG-GTGGGHHHHHTSCCSEEEEEE--TTH-HHHH-HHTTCCC--HHHHHHHHHHHCSSSCEEEEECGGGTTSS
T ss_pred CCCcCCCHH-HHHHHHHHHHHcCCCEEEeCc--Ccc-ccch-hhccCCC--HHHHHHHHHHhCCCCeEEEEeccccccCc
Confidence 444566665 478888999999999998843 110 0000 0001121 135688888888874443 32 134445
Q ss_pred CCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecC----CCCCCchHHHHHHHHHHCCCCC-ceeechhhhhcc
Q 013861 225 SSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSP----SDMMDGRVGAIRAALDAEGFQH-VSIMSYTAKYAS 299 (435)
Q Consensus 225 TshGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAP----SDMMDGrVgAIR~aLD~~Gf~~-v~IMSYSaKyAS 299 (435)
+.. .+ .+ .++.++.. +++|+|+|.- ||. +.-..+| +.+.+.|..- +.| +|.
T Consensus 95 ~~~-------~d-dv-~~~~v~~a-------~~~Gvd~i~if~~~sd~-~ni~~~i-~~ak~~G~~v~~~i-~~~----- 150 (464)
T 2nx9_A 95 RHY-------AD-DV-VDTFVERA-------VKNGMDVFRVFDAMNDV-RNMQQAL-QAVKKMGAHAQGTL-CYT----- 150 (464)
T ss_dssp SCC-------CH-HH-HHHHHHHH-------HHTTCCEEEECCTTCCT-HHHHHHH-HHHHHTTCEEEEEE-ECC-----
T ss_pred ccc-------cc-hh-hHHHHHHH-------HhCCcCEEEEEEecCHH-HHHHHHH-HHHHHCCCEEEEEE-Eee-----
Confidence 310 10 11 23344332 3679998763 333 2222223 3334566521 122 332
Q ss_pred cccccchhhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhCCCCeEEE
Q 013861 300 SFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAAY 379 (435)
Q Consensus 300 afYGPFRdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~~lPvaaY 379 (435)
.++ +.+.+..+.-+..=++-|||.|-+.----..+|. ..-++|+.+|+++++|+. +
T Consensus 151 --~~~--------------------~~~~e~~~~~a~~l~~~Gad~I~l~DT~G~~~P~-~v~~lv~~l~~~~~~~i~-~ 206 (464)
T 2nx9_A 151 --TSP--------------------VHNLQTWVDVAQQLAELGVDSIALKDMAGILTPY-AAEELVSTLKKQVDVELH-L 206 (464)
T ss_dssp --CCT--------------------TCCHHHHHHHHHHHHHTTCSEEEEEETTSCCCHH-HHHHHHHHHHHHCCSCEE-E
T ss_pred --eCC--------------------CCCHHHHHHHHHHHHHCCCCEEEEcCCCCCcCHH-HHHHHHHHHHHhcCCeEE-E
Confidence 110 1144444444443346799999732111113455 346999999999999874 4
Q ss_pred Ee
Q 013861 380 QV 381 (435)
Q Consensus 380 qV 381 (435)
|-
T Consensus 207 H~ 208 (464)
T 2nx9_A 207 HC 208 (464)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 322
>1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A
Probab=40.18 E-value=53 Score=30.72 Aligned_cols=59 Identities=17% Similarity=0.198 Sum_probs=36.4
Q ss_pred cccccEEec--ccCCCcccCCCchHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccE
Q 013861 340 SEGADILLF--SVLGSQVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADI 417 (435)
Q Consensus 340 ~EGADilM~--~~~~~~VKPal~YLDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G~ide~~~v~Esl~~ikRAGAd~ 417 (435)
+.|+|+|+. .+.|+.- ++.-.+.|+.+++..++||.+= -|.-+.++ ...+..+|||.
T Consensus 145 ~~gad~v~~~~~~~Gt~~--~~~~~~~l~~i~~~~~iPviv~--------------gGI~t~ed-----a~~~~~~GAdg 203 (264)
T 1xm3_A 145 ELGVHAIMPGASPIGSGQ--GILNPLNLSFIIEQAKVPVIVD--------------AGIGSPKD-----AAYAMELGADG 203 (264)
T ss_dssp HHTCSCBEECSSSTTCCC--CCSCHHHHHHHHHHCSSCBEEE--------------SCCCSHHH-----HHHHHHTTCSE
T ss_pred HhCCCEEEECCcccCCCC--CCCCHHHHHHHHhcCCCCEEEE--------------eCCCCHHH-----HHHHHHcCCCE
Confidence 469999973 1234431 1223789999999889999762 23333332 33456678887
Q ss_pred ee
Q 013861 418 IL 419 (435)
Q Consensus 418 Ii 419 (435)
|+
T Consensus 204 Vi 205 (264)
T 1xm3_A 204 VL 205 (264)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 323
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=40.13 E-value=48 Score=25.97 Aligned_cols=50 Identities=14% Similarity=0.068 Sum_probs=34.4
Q ss_pred ccccEEecccCCCccc---CCCchHHHHHHHHhhC-CCCeEEEEechHHHHHHHHHHCCCC
Q 013861 341 EGADILLFSVLGSQVK---PGLPYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMI 397 (435)
Q Consensus 341 EGADilM~~~~~~~VK---Pal~YLDIIr~vk~~~-~lPvaaYqVSGEYaMikaAa~~G~i 397 (435)
+-.|+|+ +- |.+.-+++++.+|+.. .+||...--..+-..+..+.+.|..
T Consensus 66 ~~~dlvi-------~D~~l~~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~ga~ 119 (146)
T 4dad_A 66 DAFDILM-------IDGAALDTAELAAIEKLSRLHPGLTCLLVTTDASSQTLLDAMRAGVR 119 (146)
T ss_dssp TTCSEEE-------EECTTCCHHHHHHHHHHHHHCTTCEEEEEESCCCHHHHHHHHTTTEE
T ss_pred CCCCEEE-------EeCCCCCccHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHhCCc
Confidence 4578988 44 5566789999999877 5899887655545555555555543
No 324
>3gka_A N-ethylmaleimide reductase; decode biostructures, ssgcid, niaid, targetdb bupsa00093A, structural genomics; HET: FMN; 2.30A {Burkholderia pseudomallei} SCOP: c.1.4.0
Probab=40.02 E-value=1.1e+02 Score=30.22 Aligned_cols=182 Identities=15% Similarity=0.153 Sum_probs=104.8
Q ss_pred hHHHHHHHHHHcCCCeEEEeecC---------C--CCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCC
Q 013861 158 GLVQEVAKARDVGVNSVVLFPKV---------P--DALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSS 226 (435)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi---------~--~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTs 226 (435)
...+-.+.+.+.|...|-|-+-= | +.-.|+.|-.--|.--++...|+.+|+.+++--|..-+....+
T Consensus 162 ~f~~AA~~A~~aGfDgVEih~a~GYLl~QFLsp~~N~RtD~yGGslenR~rf~~evv~aVr~~vg~~~v~vRls~~~~-- 239 (361)
T 3gka_A 162 AFRRGAENARAAGFDGVEVHGANGYLLDQFLQDSANRRTDAYGGSIENRARLLLEVVDAAIDVWSAARVGVHLAPRGD-- 239 (361)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCTTSHHHHHHSTTTCCCCSTTSSSHHHHSHHHHHHHHHHHHHHCGGGEEEEECTTCC--
T ss_pred HHHHHHHHHHHcCCCEEEECCcCccHHHhccCcccccccCCCCCChhhcHHHHHHHHHHHHHHcCCCeEEEecccccc--
Confidence 35556667889999999996531 2 2346777765555555777899999999863255555554332
Q ss_pred CCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCCCceeechhhhhcccccccch
Q 013861 227 DGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFR 306 (435)
Q Consensus 227 hGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMMDGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFR 306 (435)
..|+- ...+++...+.|-.+.++|+|.|.-|.-+.|. .|..-+|
T Consensus 240 --~~g~~-------~~~~~~~~~~la~~l~~~Gvd~i~v~~~~~~~---------------------------~~~~~ik 283 (361)
T 3gka_A 240 --AHTMG-------DSDPAATFGHVARELGRRRIAFLFARESFGGD---------------------------AIGQQLK 283 (361)
T ss_dssp --SSSCC-------CSCHHHHHHHHHHHHHHTTCSEEEEECCCSTT---------------------------CCHHHHH
T ss_pred --cCCCC-------CCCcHHHHHHHHHHHHHcCCCEEEECCCCCCH---------------------------HHHHHHH
Confidence 11221 11223444455566788999999866533210 2334455
Q ss_pred hhhcCCCCCCCccccCCCCCCHHHHHHHHHhccccc-ccEEecccCCCcccCCCchHHHHHHHHhhCCCCeEEEEechHH
Q 013861 307 EALDSNPRFGDKKTYQMNPANYREALVEAQADESEG-ADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEY 385 (435)
Q Consensus 307 dA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EG-ADilM~~~~~~~VKPal~YLDIIr~vk~~~~lPvaaYqVSGEY 385 (435)
++++ -|-.+.-. + +| ++| +.-+++| ||+|| + -.|.+.-=|+.+++++. .|+..|.-+.=|
T Consensus 284 ~~~~-iPvi~~Gg-i--t~---e~a----~~~l~~G~aD~V~---i---GR~~ladPdl~~k~~~g--~~l~~~~~~~~y 344 (361)
T 3gka_A 284 AAFG-GPFIVNEN-F--TL---DSA----QAALDAGQADAVA---W---GKLFIANPDLPRRFKLN--APLNEPNAATFY 344 (361)
T ss_dssp HHHC-SCEEEESS-C--CH---HHH----HHHHHTTSCSEEE---E---SHHHHHCTTHHHHHHHT--CCCCCCCGGGSS
T ss_pred HHcC-CCEEEeCC-C--CH---HHH----HHHHHcCCccEEE---E---CHHhHhCcHHHHHHHhC--CCCCCCcccccc
Confidence 5553 24332111 1 33 222 2223456 99999 2 24444445888888874 667777766655
Q ss_pred HHHHHHHHCCCCchh
Q 013861 386 SMIKAGGALKMIDEQ 400 (435)
Q Consensus 386 aMikaAa~~G~ide~ 400 (435)
.= ...|++|..
T Consensus 345 ~~----~~~gy~dyp 355 (361)
T 3gka_A 345 AQ----GEVGYTDYP 355 (361)
T ss_dssp CS----SSTTTTCSC
T ss_pred CC----CCCCcccCh
Confidence 32 346888754
No 325
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=39.89 E-value=63 Score=24.26 Aligned_cols=62 Identities=18% Similarity=0.187 Sum_probs=35.4
Q ss_pred CHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhh---CCCCeEEEEechHHHHHHHHHHCC
Q 013861 327 NYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDK---YPLPIAAYQVSGEYSMIKAGGALK 395 (435)
Q Consensus 327 N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~---~~lPvaaYqVSGEYaMikaAa~~G 395 (435)
|..||+..... ...|+++... --|.+.-+++++.+++. ..+|+...--..+......+.+.|
T Consensus 33 ~~~~a~~~~~~---~~~dlvi~D~----~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~g 97 (124)
T 1mb3_A 33 EGLSALSIARE---NKPDLILMDI----QLPEISGLEVTKWLKEDDDLAHIPVVAVTAFAMKGDEERIREGG 97 (124)
T ss_dssp CHHHHHHHHHH---HCCSEEEEES----BCSSSBHHHHHHHHHHSTTTTTSCEEEEC------CHHHHHHHT
T ss_pred CHHHHHHHHhc---CCCCEEEEeC----CCCCCCHHHHHHHHHcCccccCCcEEEEECCCCHHHHHHHHhCC
Confidence 56677765543 3579888211 23777789999999985 258888765444443333333333
No 326
>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1
Probab=39.80 E-value=1.6e+02 Score=28.79 Aligned_cols=46 Identities=20% Similarity=0.335 Sum_probs=32.4
Q ss_pred HHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEe
Q 013861 159 LVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYT 217 (435)
Q Consensus 159 l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~Iit 217 (435)
..+.++.+.+.|+..|.|-. .. | ++ ..+...|+.+|+.+|++-|+.
T Consensus 154 ~~~~a~~~~~~G~d~i~i~~--~~------g----~~-~~~~e~i~~ir~~~~~~pviv 199 (404)
T 1eep_A 154 TIERVEELVKAHVDILVIDS--AH------G----HS-TRIIELIKKIKTKYPNLDLIA 199 (404)
T ss_dssp HHHHHHHHHHTTCSEEEECC--SC------C----SS-HHHHHHHHHHHHHCTTCEEEE
T ss_pred HHHHHHHHHHCCCCEEEEeC--CC------C----Ch-HHHHHHHHHHHHHCCCCeEEE
Confidence 57778889999999887721 11 1 12 345678899999998877664
No 327
>2yyu_A Orotidine 5'-phosphate decarboxylase; TIM barrel, structural genomics, NPPSFA, national project on structural and functional analyses; HET: C5P; 2.20A {Geobacillus kaustophilus} PDB: 2yyt_A*
Probab=39.42 E-value=28 Score=32.15 Aligned_cols=42 Identities=14% Similarity=0.205 Sum_probs=29.1
Q ss_pred ccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCch-----HHHHHHHHhh
Q 013861 320 TYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPY-----LDVIRLLRDK 371 (435)
Q Consensus 320 tYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~Y-----LDIIr~vk~~ 371 (435)
---+|+.|.+|+++.++. -|..+.+ +|+++.+ .++|+.+|+.
T Consensus 8 ilalD~~~l~~~~~~v~~---~~~~v~~-------~Kv~~d~~~~~G~~~v~~lr~~ 54 (246)
T 2yyu_A 8 IVALDFPSKQEVERFLRP---FAGTPLF-------VKVGMELYYQEGPAIVAFLKEQ 54 (246)
T ss_dssp EEECCCSSHHHHHHHHGG---GTTSCCE-------EEECHHHHHHHTHHHHHHHHHT
T ss_pred EEEeCCCCHHHHHHHHHH---hcccccE-------EEeCHHHHHHhCHHHHHHHHHC
Confidence 344788999998877653 2433455 7777655 5788888886
No 328
>3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, pyridoxal 5-phosphate synthase, PLP G3 SNO1, biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A
Probab=39.26 E-value=64 Score=31.93 Aligned_cols=51 Identities=14% Similarity=0.176 Sum_probs=37.4
Q ss_pred ccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCC-------------CchHHHHHHHHhhCCCCeEEEEe
Q 013861 320 TYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPG-------------LPYLDVIRLLRDKYPLPIAAYQV 381 (435)
Q Consensus 320 tYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPa-------------l~YLDIIr~vk~~~~lPvaaYqV 381 (435)
.--||.-|.+.|--.- +-||..|| +==+ |.-++.|+++++...+||.+=-=
T Consensus 13 ~vimdv~~~eqa~iae----~aGa~av~-------~l~~~p~d~r~~gGv~Rm~dp~~I~~I~~aVsIPVm~k~r 76 (291)
T 3o07_A 13 GVIMDVVTPEQAKIAE----KSGACAVM-------ALESIPADMRKSGKVCRMSDPKMIKDIMNSVSIPVMAKVR 76 (291)
T ss_dssp CEEEEESSHHHHHHHH----HHTCSEEE-------ECSSCHHHHHTTTCCCCCCCHHHHHHHHTTCSSCEEEEEE
T ss_pred CeeeecCCHHHHHHHH----HhCchhhh-------hccCCCchhhhcCCccccCCHHHHHHHHHhCCCCeEEEEe
Confidence 4558888888764332 35999999 4422 23499999999999999998544
No 329
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Probab=39.04 E-value=40 Score=33.68 Aligned_cols=45 Identities=22% Similarity=0.141 Sum_probs=29.0
Q ss_pred HHHHhcccccccEEecc-cCCCcccCCCchHHHHHHHHhhC-CCCeEEEEe
Q 013861 333 VEAQADESEGADILLFS-VLGSQVKPGLPYLDVIRLLRDKY-PLPIAAYQV 381 (435)
Q Consensus 333 re~~~D~~EGADilM~~-~~~~~VKPal~YLDIIr~vk~~~-~lPvaaYqV 381 (435)
..+++=++.|+|+|.+. ..|. ....+|+|+.+|+.+ ++||.+=+|
T Consensus 103 e~~~~a~~aGvdvI~id~a~G~----~~~~~e~I~~ir~~~~~~~Vi~G~V 149 (361)
T 3r2g_A 103 QRAEALRDAGADFFCVDVAHAH----AKYVGKTLKSLRQLLGSRCIMAGNV 149 (361)
T ss_dssp HHHHHHHHTTCCEEEEECSCCS----SHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHHHHHcCCCEEEEeCCCCC----cHhHHHHHHHHHHhcCCCeEEEcCc
Confidence 33344446799988821 1121 113478999999987 799998555
No 330
>2zsk_A PH1733, 226AA long hypothetical aspartate racemase; alpha/beta fold, unknown function; 2.55A {Pyrococcus horikoshii}
Probab=39.00 E-value=2.1e+02 Score=25.48 Aligned_cols=27 Identities=11% Similarity=0.249 Sum_probs=21.5
Q ss_pred HCCCCchhhHHHHHHHHHHH-hcccEee
Q 013861 393 ALKMIDEQRVMMESLMCLRR-AGADIIL 419 (435)
Q Consensus 393 ~~G~ide~~~v~Esl~~ikR-AGAd~Ii 419 (435)
+.|.++.++.+.|.+..+++ .|||.||
T Consensus 163 ~~g~~~~~~~l~~~~~~l~~~~g~d~ii 190 (226)
T 2zsk_A 163 AFGNLKNKEWIVRLIEKYRESEGIEGVI 190 (226)
T ss_dssp GGTCCTTHHHHHHHHHHHHHHSCCSEEE
T ss_pred HcCchhHHHHHHHHHHHHHhhcCCCEEE
Confidence 45666545788899999988 8999987
No 331
>3hg3_A Alpha-galactosidase A; glycoprotein, carbohydrate-binding protein, glycosidase, Lys enzyme, (beta/alpha)8 barrel, disease mutation; HET: NAG BMA MAN GLA GLC 2PE; 1.90A {Homo sapiens} PDB: 3tv8_A* 3lx9_A* 3lxa_A* 3lxb_A* 3lxc_A* 3s5z_A* 1r47_A* 1r46_A* 3gxn_A* 3gxt_A* 3hg2_A* 3hg4_A* 3hg5_A* 3gxp_A* 3s5y_A*
Probab=39.00 E-value=1.3e+02 Score=30.59 Aligned_cols=110 Identities=18% Similarity=0.213 Sum_probs=70.5
Q ss_pred hHHHHHHHHH-----HcCCCeEEEeecCCCC----CCCcccCcCcCCCCC---HHHHHHHHHHHCCCeEEEeeecccCCC
Q 013861 158 GLVQEVAKAR-----DVGVNSVVLFPKVPDA----LKSPTGDEAYNDNGL---VPRTIWLLKDRYPDLVIYTDVALDPYS 225 (435)
Q Consensus 158 ~l~~~v~~~~-----~~GI~sv~LFgvi~~~----~Kd~~Gs~A~~~~g~---v~raIr~iK~~~Pdl~IitDVcLc~YT 225 (435)
.+++.++.++ ++|+.-|+| ++. .+|..|.--.|++-+ +..-++.|+++-=.+.|.+|.-- .|
T Consensus 37 ~i~~~ad~~~~~Gl~~~G~~~~~i----DDgW~~~~rd~~G~~~~~~~kFP~Gl~~l~~~ih~~Glk~Giw~~~g~--~t 110 (404)
T 3hg3_A 37 LFMEMAELMVSEGWKDAGYEYLCI----DDCWMAPQRDSEGRLQADPQRFPHGIRQLANYVHSKGLKLGIYADVGN--KT 110 (404)
T ss_dssp HHHHHHHHHHHTTHHHHTCCEEEC----CSSCBCSSCCTTSCCCBCTTTSTTHHHHHHHHHHHTTCEEEEEEESSS--BC
T ss_pred HHHHHHHHHHHCCcHhhCCeEEEE----CCCcCCCCCCCCCCeeeChhhcCCCHHHHHHHHHHCCCeeEEEecCCc--cc
Confidence 3556666554 677777765 321 356777755554332 34566778887778899998753 23
Q ss_pred CCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCC-------CCchHHHHHHHHHHCCC
Q 013861 226 SDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDM-------MDGRVGAIRAALDAEGF 285 (435)
Q Consensus 226 shGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDM-------MDGrVgAIR~aLD~~Gf 285 (435)
-.||-|.+ |+.+.| |-.+|+=|.|.|==-.+ +.-|..++|+||.+.|=
T Consensus 111 C~~~pGs~---~~~~~d---------a~~fa~WGvDylK~D~C~~~~~~~~~~~y~~m~~AL~~tGR 165 (404)
T 3hg3_A 111 CAGFPGSF---GYYDID---------AQTFADWGVDLLKFAGCYCDSLENLADGYKHMSLALNRTGR 165 (404)
T ss_dssp TTSSBCCT---TCHHHH---------HHHHHHHTCCEEEEECCSCSCHHHHHHHHHHHHHHHHHTTC
T ss_pred cCCCCccH---HHHHHH---------HHHHHHhCCcEEEecCcCCCcchhHHHHHHHHHHHHHhcCC
Confidence 34565554 344444 45799999998742221 44588999999999883
No 332
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}
Probab=38.86 E-value=36 Score=32.33 Aligned_cols=115 Identities=15% Similarity=0.116 Sum_probs=71.0
Q ss_pred cCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCC--------CCchHHHHHHHHHHCCCCCceeechhhhhcccccccc
Q 013861 234 REDGVIMNDETVHQLCKQAVSQARAGADVVSPSDM--------MDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPF 305 (435)
Q Consensus 234 ~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDM--------MDGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPF 305 (435)
++||.||- +.++.|+ --+.++|+|-|.+.+. .+=|...++.+.+..+ .+++|+.-..
T Consensus 16 ~~dg~iD~-~~l~~lv---~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~-gr~pviaGvg---------- 80 (294)
T 3b4u_A 16 KTDGTVDI-DAMIAHA---RRCLSNGCDSVTLFGTTGEGCSVGSRERQAILSSFIAAGI-APSRIVTGVL---------- 80 (294)
T ss_dssp CTTSSBCH-HHHHHHH---HHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHTTC-CGGGEEEEEC----------
T ss_pred CCCCCcCH-HHHHHHH---HHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhC-CCCcEEEeCC----------
Confidence 35688873 3344444 4456789998876543 2347777777777654 4677765422
Q ss_pred hhhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCccc-CCCc-hHHHHHHHHhhC---CCCeEEEE
Q 013861 306 REALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVK-PGLP-YLDVIRLLRDKY---PLPIAAYQ 380 (435)
Q Consensus 306 RdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VK-Pal~-YLDIIr~vk~~~---~lPvaaYq 380 (435)
+ .|.+|+++.++.=.+-|||.+|. +--...| |..- ..+=.+.+.+.+ ++||..|+
T Consensus 81 -----~--------------~~t~~ai~la~~A~~~Gadavlv-~~P~y~~~~s~~~l~~~f~~va~a~p~~~lPiilYn 140 (294)
T 3b4u_A 81 -----V--------------DSIEDAADQSAEALNAGARNILL-APPSYFKNVSDDGLFAWFSAVFSKIGKDARDILVYN 140 (294)
T ss_dssp -----C--------------SSHHHHHHHHHHHHHTTCSEEEE-CCCCSSCSCCHHHHHHHHHHHHHHHCTTCCCEEEEE
T ss_pred -----C--------------ccHHHHHHHHHHHHhcCCCEEEE-cCCcCCCCCCHHHHHHHHHHHHHhcCCCCCcEEEEE
Confidence 1 25688888877766789999991 1112223 3110 123334667788 89999999
Q ss_pred ech
Q 013861 381 VSG 383 (435)
Q Consensus 381 VSG 383 (435)
+-|
T Consensus 141 ~P~ 143 (294)
T 3b4u_A 141 IPS 143 (294)
T ss_dssp CHH
T ss_pred Ccc
Confidence 754
No 333
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A
Probab=38.70 E-value=48 Score=30.53 Aligned_cols=93 Identities=20% Similarity=0.269 Sum_probs=58.8
Q ss_pred cCCCCCCHHHHHHHHHhcccccccEEecccC-CCcccCCCch-HHHHHHHHhh--CCCCeEE-EEec--hHHHHHHHHHH
Q 013861 321 YQMNPANYREALVEAQADESEGADILLFSVL-GSQVKPGLPY-LDVIRLLRDK--YPLPIAA-YQVS--GEYSMIKAGGA 393 (435)
Q Consensus 321 YQmdp~N~~EAlre~~~D~~EGADilM~~~~-~~~VKPal~Y-LDIIr~vk~~--~~lPvaa-YqVS--GEYaMikaAa~ 393 (435)
.-.|+.|..|+++.+. +-|+|.+=+-|. |..| |-+.+ .++|+.+|+. +++|+-+ -.|. +.| ++.+++
T Consensus 12 l~~D~~~l~~~i~~l~---~~g~d~~h~DVmDg~Fv-pn~~~G~~~v~~ir~~~~~~~~~dvhLmv~~p~~~--i~~~~~ 85 (228)
T 3ovp_A 12 LNSDLANLGAECLRML---DSGADYLHLDVMDGHFV-PNITFGHPVVESLRKQLGQDPFFDMHMMVSKPEQW--VKPMAV 85 (228)
T ss_dssp TTSCGGGHHHHHHHHH---HTTCSCEEEEEEBSSSS-SCBCBCHHHHHHHHHHHCSSSCEEEEEECSCGGGG--HHHHHH
T ss_pred eeCCchhHHHHHHHHH---HcCCCEEEEEecCCCcC-cccccCHHHHHHHHHhhCCCCcEEEEEEeCCHHHH--HHHHHH
Confidence 3468889999998886 468998763322 3333 44444 7999999998 5788765 2232 334 445555
Q ss_pred CCCCch-------hhHHHHHHHHHHHhcccEeeh
Q 013861 394 LKMIDE-------QRVMMESLMCLRRAGADIILT 420 (435)
Q Consensus 394 ~G~ide-------~~~v~Esl~~ikRAGAd~IiT 420 (435)
+|. |. ..-+.+.+..+|++|..+.++
T Consensus 86 aGa-d~itvH~Ea~~~~~~~i~~i~~~G~k~gva 118 (228)
T 3ovp_A 86 AGA-NQYTFHLEATENPGALIKDIRENGMKVGLA 118 (228)
T ss_dssp HTC-SEEEEEGGGCSCHHHHHHHHHHTTCEEEEE
T ss_pred cCC-CEEEEccCCchhHHHHHHHHHHcCCCEEEE
Confidence 553 11 123566777778777776664
No 334
>2ze0_A Alpha-glucosidase; TIM barrel, glucoside hydrolase, extremophIle, hydrolase; 2.00A {Geobacillus SP}
Probab=38.59 E-value=46 Score=33.96 Aligned_cols=61 Identities=18% Similarity=0.375 Sum_probs=40.9
Q ss_pred hhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCC---------C---HHHHHHHHHHHCCCeEEEeeecccC
Q 013861 157 HGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNG---------L---VPRTIWLLKDRYPDLVIYTDVALDP 223 (435)
Q Consensus 157 ~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g---------~---v~raIr~iK~~~Pdl~IitDVcLc~ 223 (435)
.++.+.+..+.++||++|-|-|+.+. +..+..|+.-. - +.+.|+.++++ .|-||.|+-+.+
T Consensus 31 ~gi~~~ldyl~~lGv~~i~l~Pi~~~----~~~~~gY~~~dy~~id~~~Gt~~d~~~lv~~~h~~--Gi~vilD~V~NH 103 (555)
T 2ze0_A 31 RGIIEKLDYLVELGVDIVWICPIYRS----PNADNGYDISDYYAIMDEFGTMDDFDELLAQAHRR--GLKVILDLVINH 103 (555)
T ss_dssp HHHHHTHHHHHHHTCCEEEECCCEEC----CCTTTTCSCSEEEEECGGGCCHHHHHHHHHHHHHT--TCEEEEEEECSB
T ss_pred HHHHHHHHHHHHcCCCEEEeCCcccC----CCCCCCcCcccccccCcccCCHHHHHHHHHHHHHC--CCEEEEEEeccc
Confidence 36888899999999999999886432 11223344332 2 33455555554 799999998866
No 335
>2gl5_A Putative dehydratase protein; structural genomics, protein structure initiati nysgxrc; 1.60A {Salmonella typhimurium} SCOP: c.1.11.2 d.54.1.1 PDB: 4e6m_A*
Probab=38.39 E-value=1.8e+02 Score=28.32 Aligned_cols=87 Identities=15% Similarity=-0.015 Sum_probs=52.6
Q ss_pred CHHHHHHHHHhcccccccEEecccCCCccc-CCC-chHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCch-----
Q 013861 327 NYREALVEAQADESEGADILLFSVLGSQVK-PGL-PYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDE----- 399 (435)
Q Consensus 327 N~~EAlre~~~D~~EGADilM~~~~~~~VK-Pal-~YLDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G~ide----- 399 (435)
+..||++-+.. +++ .++.+ +. |-- ..++-.+++++++++||++=.---.-..++.+.++|.+|-
T Consensus 230 ~~~~ai~~~~~-l~~-~~i~~-------iE~P~~~~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~ 300 (410)
T 2gl5_A 230 GTNSAIQFAKA-IEK-YRIFL-------YEEPIHPLNSDNMQKVSRSTTIPIATGERSYTRWGYRELLEKQSIAVAQPDL 300 (410)
T ss_dssp CHHHHHHHHHH-HGG-GCEEE-------EECSSCSSCHHHHHHHHHHCSSCEEECTTCCTTHHHHHHHHTTCCSEECCCT
T ss_pred CHHHHHHHHHH-HHh-cCCCe-------EECCCChhhHHHHHHHHhhCCCCEEecCCcCCHHHHHHHHHcCCCCEEecCc
Confidence 35777766655 433 45555 32 221 2588999999999999997443223456666777777664
Q ss_pred hh--HHHHHHHHH---HHhcccEeehhc
Q 013861 400 QR--VMMESLMCL---RRAGADIILTYF 422 (435)
Q Consensus 400 ~~--~v~Esl~~i---kRAGAd~IiTYf 422 (435)
-+ -+.|++... +.+|-.+++...
T Consensus 301 ~~~GGit~~~~ia~~A~~~gi~~~~h~~ 328 (410)
T 2gl5_A 301 CLCGGITEGKKICDYANIYDTTVQVHVC 328 (410)
T ss_dssp TTTTHHHHHHHHHHHHHTTTCEECCCCC
T ss_pred cccCCHHHHHHHHHHHHHcCCeEeecCC
Confidence 22 366666554 344666666543
No 336
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*
Probab=38.29 E-value=1.7e+02 Score=27.76 Aligned_cols=110 Identities=16% Similarity=0.218 Sum_probs=65.2
Q ss_pred eechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCC--CeEEEeeecccCCCCCCc
Q 013861 152 RLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYP--DLVIYTDVALDPYSSDGH 229 (435)
Q Consensus 152 r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~P--dl~IitDVcLc~YTshGH 229 (435)
++.++ .+.+.++.+++.|+..+++.|. +|+...=..-=-.+.++...+... .+-||+=+
T Consensus 24 ~iD~~-~l~~lv~~li~~Gv~gl~v~Gt--------tGE~~~Ls~~Er~~v~~~~~~~~~g~rvpviaGv---------- 84 (301)
T 3m5v_A 24 KVDEQ-SYARLIKRQIENGIDAVVPVGT--------TGESATLTHEEHRTCIEIAVETCKGTKVKVLAGA---------- 84 (301)
T ss_dssp EECHH-HHHHHHHHHHHTTCCEEECSST--------TTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEEEC----------
T ss_pred CCCHH-HHHHHHHHHHHcCCCEEEECcc--------ccChhhCCHHHHHHHHHHHHHHhCCCCCeEEEeC----------
Confidence 44454 5889999999999999999986 233322211222345555555443 34454422
Q ss_pred ceeecCCCccccHHHHHHHHHHHHHHHHcCCCee---cCCC---CCCchHHHHHHHHHHCCCCCceeechh
Q 013861 230 DGIVREDGVIMNDETVHQLCKQAVSQARAGADVV---SPSD---MMDGRVGAIRAALDAEGFQHVSIMSYT 294 (435)
Q Consensus 230 cGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiV---APSD---MMDGrVgAIR~aLD~~Gf~~v~IMSYS 294 (435)
|...-++|+ +.+-..+++|||.| .|.= --+|-+...|+..++. +++||=|-
T Consensus 85 -------g~~~t~~ai----~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~---~lPiilYn 141 (301)
T 3m5v_A 85 -------GSNATHEAV----GLAKFAKEHGADGILSVAPYYNKPTQQGLYEHYKAIAQSV---DIPVLLYN 141 (301)
T ss_dssp -------CCSSHHHHH----HHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHC---SSCEEEEE
T ss_pred -------CCCCHHHHH----HHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhC---CCCEEEEe
Confidence 222234444 33444467899965 3321 1268888888888775 68999884
No 337
>3tfx_A Orotidine 5'-phosphate decarboxylase; PSI-biology, nysgrc, 000529, structural genomics, NEW YORK S genomics research consortium; 2.19A {Lactobacillus acidophilus}
Probab=38.25 E-value=29 Score=33.19 Aligned_cols=47 Identities=21% Similarity=0.253 Sum_probs=33.1
Q ss_pred CCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCch-----HHHHHHHHhhCCCCeEE
Q 013861 322 QMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPY-----LDVIRLLRDKYPLPIAA 378 (435)
Q Consensus 322 Qmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~Y-----LDIIr~vk~~~~lPvaa 378 (435)
=+|..+.+||+.=+.. +.+... .+ +|+++.+ +++|+.+|+. +.+|++
T Consensus 10 ALD~~~~~~al~l~~~-l~~~v~-~~-------~KvG~~l~~~~G~~~v~~Lk~~-g~~Vfl 61 (259)
T 3tfx_A 10 ALDLDNEEQLNKILSK-LGDPHD-VF-------VKVGMELFYNAGIDVIKKLTQQ-GYKIFL 61 (259)
T ss_dssp ECCCSCHHHHHHHHHT-TCCGGG-CE-------EEECHHHHHHHCHHHHHHHHHT-TCEEEE
T ss_pred EeCCCCHHHHHHHHHH-hCcccc-eE-------EEeCHHHHHhcCHHHHHHHHHC-CCcEEE
Confidence 4688899998766553 433220 47 8999887 7899999986 666664
No 338
>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2
Probab=38.19 E-value=30 Score=30.37 Aligned_cols=60 Identities=17% Similarity=0.210 Sum_probs=35.7
Q ss_pred cccccEEec-c---cCCCcccCCCchHHHHHHHHhhC-----CCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHH
Q 013861 340 SEGADILLF-S---VLGSQVKPGLPYLDVIRLLRDKY-----PLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCL 410 (435)
Q Consensus 340 ~EGADilM~-~---~~~~~VKPal~YLDIIr~vk~~~-----~lPvaaYqVSGEYaMikaAa~~G~ide~~~v~Esl~~i 410 (435)
.+++|+|++ + ..+.|.++. .-++-++.+|+.. ++|+.+ .|-|+. |.+..+
T Consensus 129 ~~~~d~vl~~~~~~g~~g~~~~~-~~~~~i~~~~~~~~~~~~~~~i~v---------------~GGI~~-----~~~~~~ 187 (220)
T 2fli_A 129 LDLVDQVLIMTVNPGFGGQAFIP-ECLEKVATVAKWRDEKGLSFDIEV---------------DGGVDN-----KTIRAC 187 (220)
T ss_dssp TTTCSEEEEESSCTTCSSCCCCG-GGHHHHHHHHHHHHHTTCCCEEEE---------------ESSCCT-----TTHHHH
T ss_pred HhhCCEEEEEEECCCCcccccCH-HHHHHHHHHHHHHHhcCCCceEEE---------------ECcCCH-----HHHHHH
Confidence 577999854 2 344555542 2356666666544 677543 345554 445556
Q ss_pred HHhcccEeeh
Q 013861 411 RRAGADIILT 420 (435)
Q Consensus 411 kRAGAd~IiT 420 (435)
+++|||.++.
T Consensus 188 ~~~Gad~vvv 197 (220)
T 2fli_A 188 YEAGANVFVA 197 (220)
T ss_dssp HHHTCCEEEE
T ss_pred HHcCCCEEEE
Confidence 7789998764
No 339
>1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1
Probab=38.14 E-value=39 Score=32.14 Aligned_cols=42 Identities=31% Similarity=0.427 Sum_probs=29.3
Q ss_pred hHHHHHHHHhhC--CCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEeehh
Q 013861 361 YLDVIRLLRDKY--PLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTY 421 (435)
Q Consensus 361 YLDIIr~vk~~~--~lPvaaYqVSGEYaMikaAa~~G~ide~~~v~Esl~~ikRAGAd~IiTY 421 (435)
.++.++++++.. ++||.+ .|-|..-+-+.|.| ++|||+|--+
T Consensus 275 ~~~~i~~i~~~~~~~ipVi~---------------~GGI~~~~da~~~l----~~GAd~V~ig 318 (336)
T 1f76_A 275 STEIIRRLSLELNGRLPIIG---------------VGGIDSVIAAREKI----AAGASLVQIY 318 (336)
T ss_dssp HHHHHHHHHHHHTTSSCEEE---------------ESSCCSHHHHHHHH----HHTCSEEEES
T ss_pred HHHHHHHHHHHhCCCCCEEE---------------ECCCCCHHHHHHHH----HCCCCEEEee
Confidence 479999999988 899986 34444444445544 4799999544
No 340
>1lt8_A Betaine-homocysteine methyltransferase; homocysteine metabolism, homocysteinemia, zinc, thiol alkyl transfer; HET: CBH CIT; 2.05A {Homo sapiens} SCOP: c.1.26.1 PDB: 1lt7_A* 1umy_A
Probab=38.05 E-value=14 Score=37.48 Aligned_cols=24 Identities=17% Similarity=0.344 Sum_probs=20.8
Q ss_pred chhhHHHHHHHHHHHhcccEeehh
Q 013861 398 DEQRVMMESLMCLRRAGADIILTY 421 (435)
Q Consensus 398 de~~~v~Esl~~ikRAGAd~IiTY 421 (435)
+..++|.+.+..+.+||||+|.|-
T Consensus 51 ~~Pe~V~~iH~~Yl~AGAdII~TN 74 (406)
T 1lt8_A 51 EHPEAVRQLHREFLRAGSNVMQTF 74 (406)
T ss_dssp HCHHHHHHHHHHHHHTTCSEEECS
T ss_pred cCHHHHHHHHHHHHHhCccceecc
Confidence 345789999999999999999873
No 341
>2ovl_A Putative racemase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.13A {Streptomyces coelicolor A3} PDB: 3ck5_A
Probab=37.85 E-value=75 Score=30.66 Aligned_cols=114 Identities=18% Similarity=0.131 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHcCCCee-------cCCCCCCchHHHHHHHHHHCCCCCceeechhhhhcccccccchhhhcCCCCCC
Q 013861 244 TVHQLCKQAVSQARAGADVV-------SPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFG 316 (435)
Q Consensus 244 Tv~~Lak~Avs~A~AGADiV-------APSDMMDGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRdA~~Sap~fg 316 (435)
+.+.+++.|....++|.+.| .|....+ +|.+||+++ | .++.|| .+.+..|
T Consensus 146 ~~e~~~~~a~~~~~~Gf~~iKik~g~~~~~~~~e-~v~avr~a~---G-~d~~l~---vDan~~~--------------- 202 (371)
T 2ovl_A 146 PVADLKTQADRFLAGGFRAIKMKVGRPDLKEDVD-RVSALREHL---G-DSFPLM---VDANMKW--------------- 202 (371)
T ss_dssp CHHHHHHHHHHHHHTTCSCEEEECCCSSHHHHHH-HHHHHHHHH---C-TTSCEE---EECTTCS---------------
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHH-HHHHHHHHh---C-CCCeEE---EECCCCC---------------
Q ss_pred CccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCch-HHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCC
Q 013861 317 DKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPY-LDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALK 395 (435)
Q Consensus 317 DRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~Y-LDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G 395 (435)
+..||++-+..=.+-|.|++= .|-.++ ++-++++++++++||++=.---....++.+.++|
T Consensus 203 ----------~~~~a~~~~~~l~~~~i~~iE--------qP~~~~d~~~~~~l~~~~~iPI~~dE~~~~~~~~~~~i~~~ 264 (371)
T 2ovl_A 203 ----------TVDGAIRAARALAPFDLHWIE--------EPTIPDDLVGNARIVRESGHTIAGGENLHTLYDFHNAVRAG 264 (371)
T ss_dssp ----------CHHHHHHHHHHHGGGCCSEEE--------CCSCTTCHHHHHHHHHHHCSCEEECTTCCSHHHHHHHHHHT
T ss_pred ----------CHHHHHHHHHHHHhcCCCEEE--------CCCCcccHHHHHHHHhhCCCCEEeCCCCCCHHHHHHHHHcC
Q ss_pred CCc
Q 013861 396 MID 398 (435)
Q Consensus 396 ~id 398 (435)
.+|
T Consensus 265 ~~d 267 (371)
T 2ovl_A 265 SLT 267 (371)
T ss_dssp CCS
T ss_pred CCC
No 342
>3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A*
Probab=37.84 E-value=44 Score=29.91 Aligned_cols=61 Identities=16% Similarity=0.211 Sum_probs=39.3
Q ss_pred HHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCc-hHHHHHHH
Q 013861 201 RTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDG-RVGAIRAA 279 (435)
Q Consensus 201 raIr~iK~~~Pdl~IitDVcLc~YTshGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMMDG-rVgAIR~a 279 (435)
..|+.||+.+|+.-|+.|+-|. + +-++ .+-..+++|||+|.=-+.-.. .+....++
T Consensus 48 ~~i~~lr~~~~~~~i~ld~~l~-----------d------~p~~------~~~~~~~aGad~i~vh~~~~~~~~~~~~~~ 104 (218)
T 3jr2_A 48 KAVSTLRHNHPNHILVCDMKTT-----------D------GGAI------LSRMAFEAGADWITVSAAAHIATIAACKKV 104 (218)
T ss_dssp HHHHHHHHHCTTSEEEEEEEEC-----------S------CHHH------HHHHHHHHTCSEEEEETTSCHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcEEEEEeec-----------c------cHHH------HHHHHHhcCCCEEEEecCCCHHHHHHHHHH
Confidence 6899999999998888887431 1 1122 234457899999975555433 24556666
Q ss_pred HHHCC
Q 013861 280 LDAEG 284 (435)
Q Consensus 280 LD~~G 284 (435)
..+.|
T Consensus 105 ~~~~g 109 (218)
T 3jr2_A 105 ADELN 109 (218)
T ss_dssp HHHHT
T ss_pred HHHhC
Confidence 66655
No 343
>3exr_A RMPD (hexulose-6-phosphate synthase); beta barrel, lyase; 1.70A {Streptococcus mutans} SCOP: c.1.2.3 PDB: 3exs_A* 3ext_A
Probab=37.82 E-value=14 Score=33.86 Aligned_cols=63 Identities=16% Similarity=0.243 Sum_probs=40.2
Q ss_pred CCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCch-----HHHHHHHHhhC-CCCeEE---EEechHHHHHHHHH
Q 013861 322 QMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPY-----LDVIRLLRDKY-PLPIAA---YQVSGEYSMIKAGG 392 (435)
Q Consensus 322 Qmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~Y-----LDIIr~vk~~~-~lPvaa---YqVSGEYaMikaAa 392 (435)
=+|..|.+||++-+.. +.... .+ +|.++.. +++|+.+|+++ +.+|+. .+--|+. +.++++
T Consensus 11 AlD~~~~~~a~~~~~~-~~~~~--~~-------ikvg~~lf~~~G~~~v~~l~~~~p~~~iflDlKl~Dip~t-~~~~~~ 79 (221)
T 3exr_A 11 ALDHSNLKGAITAAVS-VGNEV--DV-------IEAGTVCLLQVGSELVEVLRSLFPDKIIVADTKCADAGGT-VAKNNA 79 (221)
T ss_dssp EECCSSHHHHHHHHHH-HGGGC--SE-------EEECHHHHHHHCTHHHHHHHHHCTTSEEEEEEEECSCHHH-HHHHHH
T ss_pred EeCCCCHHHHHHHHHh-hCCCc--eE-------EEECHHHHHhcCHHHHHHHHHhCCCCcEEEEEEeeccHHH-HHHHHH
Confidence 3688999999988765 44334 45 5666433 68999999986 567765 3334444 234455
Q ss_pred HCC
Q 013861 393 ALK 395 (435)
Q Consensus 393 ~~G 395 (435)
+.|
T Consensus 80 ~~G 82 (221)
T 3exr_A 80 VRG 82 (221)
T ss_dssp TTT
T ss_pred HcC
Confidence 555
No 344
>2pz0_A Glycerophosphoryl diester phosphodiesterase; glycerophosphodiester phosphodiesterase, T. tengcongensis; 1.91A {Thermoanaerobacter tengcongensis}
Probab=37.75 E-value=42 Score=30.67 Aligned_cols=63 Identities=16% Similarity=0.031 Sum_probs=43.1
Q ss_pred cccEEecccCCCcccCCCchHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEeehh
Q 013861 342 GADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTY 421 (435)
Q Consensus 342 GADilM~~~~~~~VKPal~YLDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G~ide~~~v~Esl~~ikRAGAd~IiTY 421 (435)
|+|.+- +.-...--+.|+.+++ .+++|.+|-| |.+ |.+..+.+.|+|.|||-
T Consensus 188 ~~~~i~-------~~~~~~~~~~v~~~~~-~G~~v~~wTv----------------n~~----~~~~~l~~~GvdgIiTD 239 (252)
T 2pz0_A 188 EAYSLH-------PFYFNIIPELVEGCKK-NGVKLFPWTV----------------DRK----EDMERMIKAGVDGIITD 239 (252)
T ss_dssp TCSEEE-------EBGGGCCHHHHHHHHH-TTCEECCBCC----------------CSH----HHHHHHHHHTCSEEEES
T ss_pred CCeEEe-------cchhcCCHHHHHHHHH-CCCEEEEECC----------------CCH----HHHHHHHHcCCCEEEcC
Confidence 678776 2211222467777776 6899999987 332 33455677899999999
Q ss_pred cHHHHHHHHhc
Q 013861 422 FALQAARCLCG 432 (435)
Q Consensus 422 fA~~~a~~L~~ 432 (435)
+-..+.++|.+
T Consensus 240 ~P~~~~~~l~~ 250 (252)
T 2pz0_A 240 DPETLINLVRK 250 (252)
T ss_dssp CHHHHHHHHC-
T ss_pred CHHHHHHHHhh
Confidence 98888788763
No 345
>3w01_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; HET: PGE; 1.54A {Staphylococcus aureus} PDB: 3w02_A
Probab=37.68 E-value=21 Score=33.93 Aligned_cols=52 Identities=21% Similarity=0.471 Sum_probs=34.2
Q ss_pred CCCCC--HHHHHHHHHhcccccccEEecccCCCc-ccCCCchHHHHHHHHhhCCCCe--EEEEe
Q 013861 323 MNPAN--YREALVEAQADESEGADILLFSVLGSQ-VKPGLPYLDVIRLLRDKYPLPI--AAYQV 381 (435)
Q Consensus 323 mdp~N--~~EAlre~~~D~~EGADilM~~~~~~~-VKPal~YLDIIr~vk~~~~lPv--aaYqV 381 (435)
+||.- ..|++.++ .+.|+|+|| +=||. |... --+++++++|+ +++|+ ..|++
T Consensus 18 ~DPdk~~~~~~l~~~---~~~GtDaI~--vGgs~gvt~~-~~~~~v~~ik~-~~~Piil~p~~~ 74 (235)
T 3w01_A 18 LDPAKHISDDDLDAI---CMSQTDAIM--IGGTDDVTED-NVIHLMSKIRR-YPLPLVLEISNI 74 (235)
T ss_dssp ECTTSCCCHHHHHHH---HTSSCSEEE--ECCSSCCCHH-HHHHHHHHHTT-SCSCEEEECCCS
T ss_pred ECCCCcCCHHHHHHH---HHcCCCEEE--ECCcCCcCHH-HHHHHHHHhcC-cCCCEEEecCCH
Confidence 46633 46666664 488999999 33333 3211 24889999999 99997 45554
No 346
>1s4d_A Uroporphyrin-III C-methyltransferase; tetrapyrrole biosynthesis, cobalamin, SAM, SAH, uroporphyrin methyltransferase; HET: SAH; 2.70A {Pseudomonas denitrificans} SCOP: c.90.1.1
Probab=37.48 E-value=86 Score=29.34 Aligned_cols=87 Identities=18% Similarity=0.137 Sum_probs=55.2
Q ss_pred cCCCCCHHHHHHHHHHHCCCeEEEeeec-----ccCCCCCCcceeecCCCcc--ccHHHHHHHHHHHHHHHHcCCCeecC
Q 013861 193 YNDNGLVPRTIWLLKDRYPDLVIYTDVA-----LDPYSSDGHDGIVREDGVI--MNDETVHQLCKQAVSQARAGADVVSP 265 (435)
Q Consensus 193 ~~~~g~v~raIr~iK~~~Pdl~IitDVc-----Lc~YTshGHcGIv~e~g~I--dND~Tv~~Lak~Avs~A~AGADiVAP 265 (435)
-|++.+..+|+++|++. |++++ |.- |..+ .. ++-++. -|+- ....+.+.+.+..+.+++.|-+|+--
T Consensus 25 Gd~~lLTl~A~~~L~~A--DvV~~-d~~~~~~ll~~~-~~-~~~~~~-~~k~~~~~~~~~~~i~~~l~~~~~~G~~Vv~L 98 (280)
T 1s4d_A 25 GDPGLLTLHAANALRQA--DVIVH-DALVNEDCLKLA-RP-GAVLEF-AGKRGGKPSPKQRDISLRLVELARAGNRVLRL 98 (280)
T ss_dssp SCTTSSBHHHHHHHHHC--SEEEE-CSCSCTTGGGGS-ST-TCCEEE-CSCCC--CCCCHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCHHHHHHHHHHHHHhC--CEEEE-cCCCCHHHHHhc-cC-CCEEEe-ccccccccccCHHHHHHHHHHHHhCCCeEEEE
Confidence 57889999999999987 66665 421 2111 11 111221 0110 11234556677778889999888877
Q ss_pred CC---CCCchHHHHHHHHHHCCC
Q 013861 266 SD---MMDGRVGAIRAALDAEGF 285 (435)
Q Consensus 266 SD---MMDGrVgAIR~aLD~~Gf 285 (435)
++ +.=|+-+.+.+.|.++|+
T Consensus 99 ~~GDP~i~g~g~~l~~~l~~~gi 121 (280)
T 1s4d_A 99 KGGDPFVFGRGGEEALTLVEHQV 121 (280)
T ss_dssp ESBCTTSSSSHHHHHHHHHTTTC
T ss_pred cCCCCccccCHHHHHHHHHHCCC
Confidence 66 233888899999999986
No 347
>3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis}
Probab=37.48 E-value=1e+02 Score=27.28 Aligned_cols=37 Identities=14% Similarity=0.156 Sum_probs=27.2
Q ss_pred HHHcCCCeec------CCCCCCchHHHHHHHHHHCCCCCceee
Q 013861 255 QARAGADVVS------PSDMMDGRVGAIRAALDAEGFQHVSIM 291 (435)
Q Consensus 255 ~A~AGADiVA------PSDMMDGrVgAIR~aLD~~Gf~~v~IM 291 (435)
.+++|.|-|= |.++-+..+..+|+.|++.|++=+++-
T Consensus 39 ~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~ 81 (257)
T 3lmz_A 39 LERLDIHYLCIKDFHLPLNSTDEQIRAFHDKCAAHKVTGYAVG 81 (257)
T ss_dssp HHHTTCCEEEECTTTSCTTCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHhCCCEEEEecccCCCCCCHHHHHHHHHHHHHcCCeEEEEe
Confidence 3567887763 446667889999999999998544443
No 348
>3c2e_A Nicotinate-nucleotide pyrophosphorylase; qprtase, prtase, BNA6, mechanism, cytoplasm, glycosyltransferase, nucleus; 1.90A {Saccharomyces cerevisiae} PDB: 3c2f_A* 3c2o_A* 3c2v_A* 3c2r_A*
Probab=37.40 E-value=39 Score=32.64 Aligned_cols=66 Identities=18% Similarity=0.230 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHCCC-eEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHH
Q 013861 199 VPRTIWLLKDRYPD-LVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIR 277 (435)
Q Consensus 199 v~raIr~iK~~~Pd-l~IitDVcLc~YTshGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMMDGrVgAIR 277 (435)
+..+++..++.+|+ ..|+.-|+ . . |+ + ++|+ ++|||+|--+-|--..+..++
T Consensus 185 i~~ai~~~r~~~~~~~~i~vev~--t---------------l--ee-~----~~A~---~aGaD~I~ld~~~~~~l~~~v 237 (294)
T 3c2e_A 185 ITNAVKNARAVCGFAVKIEVECL--S---------------E--DE-A----TEAI---EAGADVIMLDNFKGDGLKMCA 237 (294)
T ss_dssp HHHHHHHHHHHHCTTSCEEEECS--S---------------S--HH-H----HHHH---HHTCSEEECCC----------
T ss_pred HHHHHHHHHHhcCcCCeEEEecC--C---------------H--HH-H----HHHH---HcCCCEEEECCCCHHHHHHHH
Confidence 67899999999875 33333211 1 1 11 1 1222 579999987776556777777
Q ss_pred HHHHHC--CCCCceee
Q 013861 278 AALDAE--GFQHVSIM 291 (435)
Q Consensus 278 ~aLD~~--Gf~~v~IM 291 (435)
+.++.. ||.++.|.
T Consensus 238 ~~l~~~~~g~~~v~I~ 253 (294)
T 3c2e_A 238 QSLKNKWNGKKHFLLE 253 (294)
T ss_dssp -----------CCEEE
T ss_pred HHhcccccCCCCeEEE
Confidence 788877 78888774
No 349
>4ab4_A Xenobiotic reductase B; oxidoreductase, OLD yellow enzyme; HET: FMN TNL EDO; 1.50A {Pseudomonas putida KT2440}
Probab=37.34 E-value=1.2e+02 Score=30.03 Aligned_cols=180 Identities=14% Similarity=0.160 Sum_probs=103.1
Q ss_pred HHHHHHHHHHcCCCeEEEeecC---------C--CCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCC
Q 013861 159 LVQEVAKARDVGVNSVVLFPKV---------P--DALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSD 227 (435)
Q Consensus 159 l~~~v~~~~~~GI~sv~LFgvi---------~--~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTsh 227 (435)
..+-.+.+.+.|...|-|-+-= | +.-.|+.|-.--|.--++...|+++|+.+++--|..-+....+.
T Consensus 155 f~~AA~~a~~aGfDgVEih~a~GYLl~QFLSp~~N~RtD~yGGslenR~rf~~eiv~aVr~~vg~~~v~vRls~~~~~-- 232 (362)
T 4ab4_A 155 YRSGAENAKAAGFDGVEIHGANGYLLDQFLQSSTNQRTDRYGGSLENRARLLLEVTDAAIEVWGAQRVGVHLAPRADA-- 232 (362)
T ss_dssp HHHHHHHHHHTTCSEEEEECCTTSHHHHHHSTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCS--
T ss_pred HHHHHHHHHHcCCCEEEECCcCccHHHhhcCCccccccCCCCCchhhHHHHHHHHHHHHHHhcCCCceEEEeeccccc--
Confidence 4555566789999999996531 1 23457766544444456778899999998632556555543321
Q ss_pred CcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCCCceeechhhhhcccccccchh
Q 013861 228 GHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFRE 307 (435)
Q Consensus 228 GHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMMDGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRd 307 (435)
.|.- ...+++...+.|-.+.++|+|.|.-|.-+.|. .|..-+|+
T Consensus 233 --~g~~-------~~~~~~~~~~la~~l~~~Gvd~i~v~~~~~~~---------------------------~~~~~ik~ 276 (362)
T 4ab4_A 233 --HDMG-------DADRAETFTYVARELGKRGIAFICSREREADD---------------------------SIGPLIKE 276 (362)
T ss_dssp --SSCC-------CTTHHHHHHHHHHHHHHTTCSEEEEECCCCTT---------------------------CCHHHHHH
T ss_pred --cccC-------CCCcHHHHHHHHHHHHHhCCCEEEECCCCCCH---------------------------HHHHHHHH
Confidence 1111 11234445555666788999999866543221 23344555
Q ss_pred hhcCCCCCCCccccCCCCCCHHHHHHHHHhccccc-ccEEecccCCCcccCCCchHHHHHHHHhhCCCCeEEEEechHHH
Q 013861 308 ALDSNPRFGDKKTYQMNPANYREALVEAQADESEG-ADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYS 386 (435)
Q Consensus 308 A~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EG-ADilM~~~~~~~VKPal~YLDIIr~vk~~~~lPvaaYqVSGEYa 386 (435)
+++ -|-.+.-. + +| ++| +.-+++| ||+|| + =.|.+.-=|+.+++++. .|+..|.-+-=|.
T Consensus 277 ~~~-iPvi~~Gg-i--t~---e~a----~~~l~~g~aD~V~---i---GR~~lanPdl~~k~~~g--~~l~~~d~~~~y~ 337 (362)
T 4ab4_A 277 AFG-GPYIVNER-F--DK---ASA----NAALASGKADAVA---F---GVPFIANPDLPARLAAD--APLNEAHPETFYG 337 (362)
T ss_dssp HHC-SCEEEESS-C--CH---HHH----HHHHHTTSCSEEE---E---SHHHHHCTTHHHHHHTT--CCCCCCCGGGSSS
T ss_pred HCC-CCEEEeCC-C--CH---HHH----HHHHHcCCccEEE---E---CHHhHhCcHHHHHHHcC--CCCCCCChhhccC
Confidence 553 24332111 1 33 222 2233456 99999 2 24444445888888874 6666776655553
Q ss_pred HHHHHHHCCCCch
Q 013861 387 MIKAGGALKMIDE 399 (435)
Q Consensus 387 MikaAa~~G~ide 399 (435)
- ...|++|.
T Consensus 338 ~----~~~gy~dy 346 (362)
T 4ab4_A 338 K----GPVGYIDY 346 (362)
T ss_dssp S----SSTTTTCS
T ss_pred C----CCCCcccc
Confidence 2 34788885
No 350
>2xwp_A Sirohydrochlorin cobaltochelatase; lyase, beta-alpha-beta, cobalamin biosynthesis, metal-bindin parallel beta sheet; HET: SIR; 1.90A {Salmonella enterica} PDB: 1qgo_A*
Probab=37.31 E-value=1.8e+02 Score=26.89 Aligned_cols=125 Identities=17% Similarity=0.148 Sum_probs=72.7
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccC-------------C
Q 013861 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDP-------------Y 224 (435)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~-------------Y 224 (435)
++.+-++++.+.|++.|++.|... -.|.+- + -+++.+..+++.||++.+..-..-++ +
T Consensus 61 si~~aL~~l~~~G~~~vvV~Pl~l-----~~G~~~---~-di~~~v~~~~~~~~~i~~~~pl~~~~~~~~~l~~~l~~~~ 131 (264)
T 2xwp_A 61 TPLQALQKLAAQGYQDVAIQSLHI-----INGDEY---E-KIVREVQLLRPLFTRLTLGVPLLSSHNDYVQLMQALRQQM 131 (264)
T ss_dssp CHHHHHHHHHHHTCCEEEEEECCS-----SSSHHH---H-HHHHHHHHHGGGCSEEEEECCSSCSHHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHhCCCCEEEEEeCcc-----cCcHHH---H-HHHHHHHHHHhhCCceEEecCCCCCHHHHHHHHHHHHHhc
Confidence 466778899999999999998744 134432 2 56778888888899876643322221 1
Q ss_pred CCC-Ccceeec-CCCccccHHHHHHHHHHHHHHHHcCCCe-ecCCCCCCchHHHHHHHHHHCCCCCceeechh
Q 013861 225 SSD-GHDGIVR-EDGVIMNDETVHQLCKQAVSQARAGADV-VSPSDMMDGRVGAIRAALDAEGFQHVSIMSYT 294 (435)
Q Consensus 225 Tsh-GHcGIv~-e~g~IdND~Tv~~Lak~Avs~A~AGADi-VAPSDMMDGrVgAIR~aLD~~Gf~~v~IMSYS 294 (435)
... ...+++- -.|.-+. .-....+.+....+.|-.+ ++.-.. .=.+...=+.|.+.|.++|.|+.|.
T Consensus 132 ~~~~~~~~lvl~gHGs~~~--~~~~~~~~a~~l~~~~~~v~~g~~e~-~P~~~~~l~~l~~~G~~~v~v~P~~ 201 (264)
T 2xwp_A 132 PSLRQTEKVVFMGHGASHH--AFAAYACLDHMMTAQRFPARVGAVES-YPEVDILIDSLRDEGVTGVHLMPLM 201 (264)
T ss_dssp CCCCTTEEEEEEECCCSSG--GGHHHHHHHHHHHHTTCSEEEEESSS-SSCHHHHHHHHHHHTCCEEEEEECS
T ss_pred cccCCCCeEEEEECCCCch--hhHHHHHHHHHHHhhCCCEEEEEeCC-CCCHHHHHHHHHHCCCCEEEEEeee
Confidence 111 2335442 2343332 2233445554445555322 232222 3445555566778899999999984
No 351
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=37.16 E-value=45 Score=29.01 Aligned_cols=79 Identities=20% Similarity=0.281 Sum_probs=53.2
Q ss_pred CHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCch------h
Q 013861 327 NYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDE------Q 400 (435)
Q Consensus 327 N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G~ide------~ 400 (435)
|..||+..... +..|+|+... --|.+.-+++++.+++...+|+...--..+...+..+.+.|..|. .
T Consensus 37 ~~~~al~~l~~---~~~dlvilD~----~l~~~~g~~~~~~lr~~~~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~ 109 (238)
T 2gwr_A 37 DGTQALTAVRE---LRPDLVLLDL----MLPGMNGIDVCRVLRADSGVPIVMLTAKTDTVDVVLGLESGADDYIMKPFKP 109 (238)
T ss_dssp CGGGHHHHHHH---HCCSEEEEES----SCSSSCHHHHHHHHHTTCCCCEEEEEETTCCSCHHHHHHTTCCEEEEESCCH
T ss_pred CHHHHHHHHHh---CCCCEEEEeC----CCCCCCHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHCCCCEEEeCCCCH
Confidence 44556554432 3578888221 126777899999999888999999988888877778888887553 2
Q ss_pred hHHHHHHHHHHH
Q 013861 401 RVMMESLMCLRR 412 (435)
Q Consensus 401 ~~v~Esl~~ikR 412 (435)
+.+.+.+..+.+
T Consensus 110 ~~L~~~i~~~~~ 121 (238)
T 2gwr_A 110 KELVARVRARLR 121 (238)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHHHHHHh
Confidence 344555554433
No 352
>3m47_A Orotidine 5'-phosphate decarboxylase; orotidine 5'-monophosphate decarboxylase, mutant I218A, LYAS; 1.20A {Methanothermobacter thermautotrophicusdelta H} SCOP: c.1.2.3 PDB: 3li1_A 3m5z_A 3lty_A 3ltp_A* 3g18_A* 3g1d_A* 3g1f_A* 3g1h_A* 3g1a_A* 3lv6_A* 1klz_A* 3g1y_A 3g22_A* 3g24_A* 3p5z_A* 3siz_A* 3sy5_A* 1loq_A* 1lor_A* 1kly_A* ...
Probab=37.12 E-value=2.1e+02 Score=26.23 Aligned_cols=63 Identities=22% Similarity=0.257 Sum_probs=40.5
Q ss_pred HHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCC-CchHHHHHHH
Q 013861 201 RTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMM-DGRVGAIRAA 279 (435)
Q Consensus 201 raIr~iK~~~Pdl~IitDVcLc~YTshGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMM-DGrVgAIR~a 279 (435)
..|+.||+. ++..|+.|+-| + |.-.|++..++. ++++|||+|.=.--+ ...+.+..++
T Consensus 54 ~~v~~l~~~-~g~~v~lD~Kl---------------~--DipnTv~~~~~~---~~~~gad~vtvh~~~G~~~l~~~~~~ 112 (228)
T 3m47_A 54 DIIAEFRKR-FGCRIIADFKV---------------A--DIPETNEKICRA---TFKAGADAIIVHGFPGADSVRACLNV 112 (228)
T ss_dssp HHHHHHHHH-HCCEEEEEEEE---------------C--SCHHHHHHHHHH---HHHTTCSEEEEESTTCHHHHHHHHHH
T ss_pred HHHHHHHhc-CCCeEEEEEee---------------c--ccHhHHHHHHHH---HHhCCCCEEEEeccCCHHHHHHHHHH
Confidence 467778774 45667788755 1 567788887774 467999996544333 3345555666
Q ss_pred HHHCC
Q 013861 280 LDAEG 284 (435)
Q Consensus 280 LD~~G 284 (435)
+.+.|
T Consensus 113 ~~~~g 117 (228)
T 3m47_A 113 AEEMG 117 (228)
T ss_dssp HHHHT
T ss_pred HHhcC
Confidence 65555
No 353
>2ox4_A Putative mandelate racemase; enolase, dehydratase, structural genomics, protein structure initiative, PSI, nysgrc; 1.80A {Zymomonas mobilis}
Probab=36.95 E-value=2.2e+02 Score=27.70 Aligned_cols=141 Identities=17% Similarity=0.096 Sum_probs=82.1
Q ss_pred cHHHHHHHHHHHHHHHHcCCCeecCC-------CC--------------CC---chHHHHHHHHHHCCCCCceeechhhh
Q 013861 241 NDETVHQLCKQAVSQARAGADVVSPS-------DM--------------MD---GRVGAIRAALDAEGFQHVSIMSYTAK 296 (435)
Q Consensus 241 ND~Tv~~Lak~Avs~A~AGADiVAPS-------DM--------------MD---GrVgAIR~aLD~~Gf~~v~IMSYSaK 296 (435)
|..+.+.+++.|....++|.+.|=-- +- ++ -+|.+||+++ |. ++.||- .
T Consensus 143 ~~~~~e~~~~~a~~~~~~Gf~~vKik~~~~~~~G~~~~s~~~g~~~~~~~~~~~e~v~avr~av---G~-d~~l~v---D 215 (403)
T 2ox4_A 143 SKGRKEEYAEEALKAVAEGYDAVKVDVLAHDRNGSREGVFLEGPLPSETIKIGVERVEAIRNAV---GP-DVDIIV---E 215 (403)
T ss_dssp CCCSHHHHHHHHHHHHHTTCSEEEECCSSSCTTSCCTTCCCSSSCCHHHHHHHHHHHHHHHHHH---CT-TSEEEE---E
T ss_pred ccCCHHHHHHHHHHHHHcCCCEEEEeccccCCccccccCcccCCCchHHHHHHHHHHHHHHHHh---CC-CCeEEE---E
Confidence 44467778888888889999986411 00 01 2455556554 42 555552 1
Q ss_pred hcccccccchhhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCccc-CCC-chHHHHHHHHhhCCC
Q 013861 297 YASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVK-PGL-PYLDVIRLLRDKYPL 374 (435)
Q Consensus 297 yASafYGPFRdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VK-Pal-~YLDIIr~vk~~~~l 374 (435)
.+ ..| +..||++-+.. +++ .++.+ +. |-- ..++-.+++++++++
T Consensus 216 an--------------------~~~-----~~~~ai~~~~~-l~~-~~i~~-------iE~P~~~~d~~~~~~l~~~~~i 261 (403)
T 2ox4_A 216 NH--------------------GHT-----DLVSAIQFAKA-IEE-FNIFF-------YEEINTPLNPRLLKEAKKKIDI 261 (403)
T ss_dssp CT--------------------TCS-----CHHHHHHHHHH-HGG-GCEEE-------EECCSCTTSTHHHHHHHHTCCS
T ss_pred CC--------------------CCC-----CHHHHHHHHHH-HHh-hCCCE-------EeCCCChhhHHHHHHHHHhCCC
Confidence 11 112 35777766554 433 45555 32 321 257889999999999
Q ss_pred CeEEEEechHHHHHHHHHHCCCCch-----hh--HHHHHHHHH---HHhcccEeehhc
Q 013861 375 PIAAYQVSGEYSMIKAGGALKMIDE-----QR--VMMESLMCL---RRAGADIILTYF 422 (435)
Q Consensus 375 PvaaYqVSGEYaMikaAa~~G~ide-----~~--~v~Esl~~i---kRAGAd~IiTYf 422 (435)
||++=.---.-..++.+.++|.+|- .+ -+.|++... +.+|-.+++...
T Consensus 262 PIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGite~~~i~~~A~~~g~~~~~h~~ 319 (403)
T 2ox4_A 262 PLASGERIYSRWGFLPFLEDRSIDVIQPDLGTCGGFTEFKKIADMAHIFEVTVQAHVA 319 (403)
T ss_dssp CEEECTTCCHHHHHHHHHHTTCCSEECCCHHHHTHHHHHHHHHHHHHHTTCEECCCCC
T ss_pred CEEecCCcCCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHcCCEEeecCC
Confidence 9997433222456677777787664 22 355555544 455777766543
No 354
>1mdl_A Mandelate racemase; isomerase, mandelate pathway, magnesium; HET: RMN SMN; 1.85A {Pseudomonas aeruginosa} SCOP: c.1.11.2 d.54.1.1 PDB: 1mdr_A* 3uxk_A* 3uxl_A* 1dtn_A* 1mra_A* 2mnr_A 1mns_A
Probab=36.89 E-value=1.1e+02 Score=29.17 Aligned_cols=114 Identities=21% Similarity=0.237 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHcCCCee-------cCCCCCCchHHHHHHHHHHCCCCCceeechhhhhcccccccchhhhcCCCCCC
Q 013861 244 TVHQLCKQAVSQARAGADVV-------SPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFG 316 (435)
Q Consensus 244 Tv~~Lak~Avs~A~AGADiV-------APSDMMDGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRdA~~Sap~fg 316 (435)
+.+.+++.|....++|.+.| .|....+ +|.+||+++ | .++.|| .+....|
T Consensus 144 ~~~~~~~~a~~~~~~Gf~~iKik~g~~~~~~~~e-~v~avr~a~---g-~~~~l~---vDan~~~--------------- 200 (359)
T 1mdl_A 144 GVKLATERAVTAAELGFRAVKTRIGYPALDQDLA-VVRSIRQAV---G-DDFGIM---VDYNQSL--------------- 200 (359)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEECCCSSHHHHHH-HHHHHHHHH---C-SSSEEE---EECTTCS---------------
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCCCHHHHHH-HHHHHHHHh---C-CCCEEE---EECCCCC---------------
Q ss_pred CccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCch-HHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCC
Q 013861 317 DKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPY-LDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALK 395 (435)
Q Consensus 317 DRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~Y-LDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G 395 (435)
+..||++-+..=.+-|.|++= .|-.++ ++-++++++++++||++=.---....++.+.+.|
T Consensus 201 ----------~~~~a~~~~~~l~~~~i~~iE--------~P~~~~~~~~~~~l~~~~~iPI~~de~~~~~~~~~~~i~~~ 262 (359)
T 1mdl_A 201 ----------DVPAAIKRSQALQQEGVTWIE--------EPTLQHDYEGHQRIQSKLNVPVQMGENWLGPEEMFKALSIG 262 (359)
T ss_dssp ----------CHHHHHHHHHHHHHHTCSCEE--------CCSCTTCHHHHHHHHHTCSSCEEECTTCCSHHHHHHHHHTT
T ss_pred ----------CHHHHHHHHHHHHHhCCCeEE--------CCCChhhHHHHHHHHHhCCCCEEeCCCCCCHHHHHHHHHcC
Q ss_pred CCc
Q 013861 396 MID 398 (435)
Q Consensus 396 ~id 398 (435)
.+|
T Consensus 263 ~~d 265 (359)
T 1mdl_A 263 ACR 265 (359)
T ss_dssp CCS
T ss_pred CCC
No 355
>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A
Probab=36.60 E-value=53 Score=29.49 Aligned_cols=163 Identities=11% Similarity=0.038 Sum_probs=82.2
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCC
Q 013861 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDG 237 (435)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTshGHcGIv~e~g 237 (435)
+.++.++.+.+.|+..+.+-.. +..+. ..+.--..++.|+ .+ ++-|+. +|
T Consensus 31 ~~~~~a~~~~~~Gad~i~v~d~------~~~~~----~~~~~~~~i~~i~-~~-~ipvi~------------------~G 80 (241)
T 1qo2_A 31 DPVELVEKLIEEGFTLIHVVDL------SNAIE----NSGENLPVLEKLS-EF-AEHIQI------------------GG 80 (241)
T ss_dssp CHHHHHHHHHHTTCCCEEEEEH------HHHHH----CCCTTHHHHHHGG-GG-GGGEEE------------------ES
T ss_pred CHHHHHHHHHHcCCCEEEEecc------ccccc----CCchhHHHHHHHH-hc-CCcEEE------------------EC
Confidence 3788899999999999887442 11111 1233345666666 43 222221 13
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCCCceeechhhhhcccccccchhhhcCCCCCCC
Q 013861 238 VIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGD 317 (435)
Q Consensus 238 ~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMMDGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRdA~~Sap~fgD 317 (435)
.|.+-+.++. ..++|||.|.=.+..=..-..++++ ...| ..+ +++-++|- | -+.. .|-
T Consensus 81 gi~~~~~~~~-------~~~~Gad~V~lg~~~l~~p~~~~~~-~~~g-~~i-~~~~d~~~-----~----~v~~---~g~ 138 (241)
T 1qo2_A 81 GIRSLDYAEK-------LRKLGYRRQIVSSKVLEDPSFLKSL-REID-VEP-VFSLDTRG-----G----RVAF---KGW 138 (241)
T ss_dssp SCCSHHHHHH-------HHHTTCCEEEECHHHHHCTTHHHHH-HTTT-CEE-EEEEEEET-----T----EECC---TTC
T ss_pred CCCCHHHHHH-------HHHCCCCEEEECchHhhChHHHHHH-HHcC-CcE-EEEEEecC-----C----EEEE---CCc
Confidence 3333333322 2347999873221110111125555 5555 333 33444431 1 0110 111
Q ss_pred ccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhCCCCeEE
Q 013861 318 KKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAA 378 (435)
Q Consensus 318 RktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~~lPvaa 378 (435)
++. ...+..|..++++ +.|+|.|.+...+..-....+-++.++++++.+++||.|
T Consensus 139 ~~~---~~~~~~e~~~~~~---~~G~~~i~~t~~~~~g~~~g~~~~~i~~l~~~~~iPvia 193 (241)
T 1qo2_A 139 LAE---EEIDPVSLLKRLK---EYGLEEIVHTEIEKDGTLQEHDFSLTKKIAIEAEVKVLA 193 (241)
T ss_dssp SSC---SCCCHHHHHHHHH---TTTCCEEEEEETTHHHHTCCCCHHHHHHHHHHHTCEEEE
T ss_pred eec---CCCCHHHHHHHHH---hCCCCEEEEEeecccccCCcCCHHHHHHHHHhcCCcEEE
Confidence 111 1124556555554 379998885443321111224599999999999999986
No 356
>1ua7_A Alpha-amylase; beta-alpha-barrels, acarbose, greek-KEY motif, hydrolase; HET: ACI GLD GLC G6D BGC; 2.21A {Bacillus subtilis} SCOP: b.71.1.1 c.1.8.1 PDB: 1bag_A* 3dc0_A
Probab=36.53 E-value=35 Score=33.40 Aligned_cols=107 Identities=15% Similarity=0.130 Sum_probs=63.2
Q ss_pred echhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcc-------cCcCcCCC---------CCHH---HHHHHHHHHCCCe
Q 013861 153 LGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPT-------GDEAYNDN---------GLVP---RTIWLLKDRYPDL 213 (435)
Q Consensus 153 ~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~-------Gs~A~~~~---------g~v~---raIr~iK~~~Pdl 213 (435)
++++ ++.+++..+.++|+++|-|-|+.+ ..++.. +...|++- |-.. +.|+.++++ .|
T Consensus 14 ~~~~-~i~~~l~yl~~lG~~~i~l~Pi~~-~~~~~~~~~~~~~~~~gY~~~~y~~~~~~~G~~~d~~~lv~~~h~~--Gi 89 (422)
T 1ua7_A 14 WSFN-TLKHNMKDIHDAGYTAIQTSPINQ-VKEGNQGDKSMSNWYWLYQPTSYQIGNRYLGTEQEFKEMCAAAEEY--GI 89 (422)
T ss_dssp BCHH-HHHHTHHHHHHTTCSEEEECCCEE-ECCTGGGCCBGGGGGGGGCEEEEEEEETTTEEHHHHHHHHHHHHTT--TC
T ss_pred CCHH-HHHHHHHHHHHcCCCEEEeCCccc-cccCCcCcCccCCccccccceeeeccCCCCCCHHHHHHHHHHHHHC--CC
Confidence 3675 699999999999999999988422 112221 12334332 3333 444444444 69
Q ss_pred EEEeeecccCCCCCCcc----------------eeec-CC----------C----ccccHHHHHHHHHHHHHHHHcCCCe
Q 013861 214 VIYTDVALDPYSSDGHD----------------GIVR-ED----------G----VIMNDETVHQLCKQAVSQARAGADV 262 (435)
Q Consensus 214 ~IitDVcLc~YTshGHc----------------GIv~-e~----------g----~IdND~Tv~~Lak~Avs~A~AGADi 262 (435)
-||.|+-+-+.....+. .+-+ .+ | .-.|.+..+.|...+.-..+.|+|-
T Consensus 90 ~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~v~~~l~~~~~~w~~~gvDG 169 (422)
T 1ua7_A 90 KVIVDAVINHTTFDYAAISNEVKSIPNWTHGNTQIKNWSDRWDVTQNSLLGLYDWNTQNTQVQSYLKRFLERALNDGADG 169 (422)
T ss_dssp EEEEEECCSBCCSCTTTSCHHHHTSTTCEEECCBCCCTTCHHHHHHSBBTTBCEECTTSHHHHHHHHHHHHHHHHTTCCE
T ss_pred EEEEEeccCcccCCccccCccccCCcccccCCCCCCCcCchhcccccccCCCCccccCCHHHHHHHHHHHHHHHHcCCCE
Confidence 99999988654332211 1110 00 1 1235677777888777778888865
Q ss_pred e
Q 013861 263 V 263 (435)
Q Consensus 263 V 263 (435)
+
T Consensus 170 f 170 (422)
T 1ua7_A 170 F 170 (422)
T ss_dssp E
T ss_pred E
Confidence 4
No 357
>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis}
Probab=36.53 E-value=59 Score=30.48 Aligned_cols=50 Identities=12% Similarity=0.040 Sum_probs=36.7
Q ss_pred eeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCC
Q 013861 151 YRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPD 212 (435)
Q Consensus 151 ~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pd 212 (435)
.|...+ .+++.++.+.+.|+..+.|. |..|. ..|+ .+.+-++.|++.+|+
T Consensus 150 ~~~~~~-~~~~~~~~~~~~G~d~i~l~--------Dt~G~--~~P~-~~~~lv~~l~~~~~~ 199 (295)
T 1ydn_A 150 GPVTPQ-AVASVTEQLFSLGCHEVSLG--------DTIGR--GTPD-TVAAMLDAVLAIAPA 199 (295)
T ss_dssp EECCHH-HHHHHHHHHHHHTCSEEEEE--------ETTSC--CCHH-HHHHHHHHHHTTSCG
T ss_pred CCCCHH-HHHHHHHHHHhcCCCEEEec--------CCCCC--cCHH-HHHHHHHHHHHhCCC
Confidence 688876 59999999999999998885 33443 2232 345678888888885
No 358
>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A*
Probab=36.32 E-value=63 Score=30.19 Aligned_cols=41 Identities=20% Similarity=0.244 Sum_probs=29.2
Q ss_pred HHHHHHHHhhC--CCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEeehh
Q 013861 362 LDVIRLLRDKY--PLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTY 421 (435)
Q Consensus 362 LDIIr~vk~~~--~lPvaaYqVSGEYaMikaAa~~G~ide~~~v~Esl~~ikRAGAd~IiTY 421 (435)
++.|+++++.+ ++||.+ .|-|..-+-+.|.| .+|||.|..+
T Consensus 229 ~~~i~~v~~~~~~~ipvi~---------------~GGI~~~~da~~~l----~~GAd~V~vg 271 (311)
T 1jub_A 229 LANVRAFYTRLKPEIQIIG---------------TGGIETGQDAFEHL----LCGATMLQIG 271 (311)
T ss_dssp HHHHHHHHTTSCTTSEEEE---------------ESSCCSHHHHHHHH----HHTCSEEEEC
T ss_pred HHHHHHHHHhcCCCCCEEE---------------ECCCCCHHHHHHHH----HcCCCEEEEc
Confidence 89999999998 899875 34454444445554 4799998544
No 359
>3m07_A Putative alpha amylase; IDP00968, csgid, structural genomics, center for structural genomics of infectious diseases, unknown function; HET: BTB PG4 PGE; 1.40A {Salmonella enterica subsp}
Probab=36.28 E-value=49 Score=34.83 Aligned_cols=124 Identities=11% Similarity=0.135 Sum_probs=80.9
Q ss_pred chhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCC------------HHHHHHHHHHHCCCeEEEeeecc
Q 013861 154 GWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGL------------VPRTIWLLKDRYPDLVIYTDVAL 221 (435)
Q Consensus 154 s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~------------v~raIr~iK~~~Pdl~IitDVcL 221 (435)
++. ++.+.+..+.++||++|-|-|+-+- ....+..|++-+. +.+.|+.++++ .|-||.|+.+
T Consensus 152 ~~~-~~~~~L~yl~~lGv~~v~l~Pi~~~---~~~~~~GY~~~~~~~~~~~~G~~~~~~~lv~~~H~~--Gi~VilD~V~ 225 (618)
T 3m07_A 152 TFR-AAIAKLPYLAELGVTVIEVMPVAQF---GGERGWGYDGVLLYAPHSAYGTPDDFKAFIDAAHGY--GLSVVLDIVL 225 (618)
T ss_dssp SHH-HHHTTHHHHHHHTCCEEEECCCEEC---SSSCCCSTTCCEEEEECTTTCCHHHHHHHHHHHHHT--TCEEEEEECC
T ss_pred CHH-HHHHHHHHHHHcCCCEEEeCChhcc---CCCCCCCcCcccccccCcCcCCHHHHHHHHHHHHHC--CCEEEEeecC
Confidence 344 6888999999999999999885211 1112234444333 55667777666 6999999998
Q ss_pred cCCCCCCcc------eeecC--------CCccccHHHHHHHHHHHHHHH-HcCCCee---cCCCC----CCchHHHHHHH
Q 013861 222 DPYSSDGHD------GIVRE--------DGVIMNDETVHQLCKQAVSQA-RAGADVV---SPSDM----MDGRVGAIRAA 279 (435)
Q Consensus 222 c~YTshGHc------GIv~e--------~g~IdND~Tv~~Lak~Avs~A-~AGADiV---APSDM----MDGrVgAIR~a 279 (435)
.+...+++. .-..+ +=...|.+..+.+...+.-.. +.|+|-+ +...| -..-+..|++.
T Consensus 226 NH~~~~~~~~~~~~~~~~~~~~~~~wg~~ln~~~p~V~~~i~~~~~~w~~~~gvDGfR~D~~~~~~~~~~~~f~~~l~~~ 305 (618)
T 3m07_A 226 NHFGPEGNYLPLLAPAFFHKERMTPWGNGIAYDVDAVRRYIIEAPLYWLTEYHLDGLRFDAIDQIEDSSARHVLVEIAQR 305 (618)
T ss_dssp SCCCSSSCCHHHHCGGGEEEEEEETTEEEECTTSHHHHHHHHHHHHHHHHHTTCSEEEETTGGGCCCCSSSCHHHHHHHH
T ss_pred ccCCCCcccccccCchhhcCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHhCccEEEecchhhhcccchHHHHHHHHHH
Confidence 776544321 00100 002357788888888888888 7899865 44445 34567888888
Q ss_pred HHHC
Q 013861 280 LDAE 283 (435)
Q Consensus 280 LD~~ 283 (435)
+.+.
T Consensus 306 v~~~ 309 (618)
T 3m07_A 306 IRED 309 (618)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8776
No 360
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*
Probab=36.14 E-value=86 Score=29.73 Aligned_cols=40 Identities=20% Similarity=0.311 Sum_probs=27.0
Q ss_pred ccccccEEecccC--CCcccC-CCchHHHHHHHHhhCCCCeEE
Q 013861 339 ESEGADILLFSVL--GSQVKP-GLPYLDVIRLLRDKYPLPIAA 378 (435)
Q Consensus 339 ~~EGADilM~~~~--~~~VKP-al~YLDIIr~vk~~~~lPvaa 378 (435)
++.|+|.|.+... |..... ..+-++.++++++..++||.+
T Consensus 135 ~~~GaD~i~v~g~~~GG~~G~~~~~~~~~l~~v~~~~~iPvia 177 (328)
T 2gjl_A 135 ERLGVDAVSIDGFECAGHPGEDDIPGLVLLPAAANRLRVPIIA 177 (328)
T ss_dssp HHTTCSEEEEECTTCSBCCCSSCCCHHHHHHHHHTTCCSCEEE
T ss_pred HHcCCCEEEEECCCCCcCCCCccccHHHHHHHHHHhcCCCEEE
Confidence 4579999995321 211111 235689999999999999865
No 361
>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*
Probab=36.07 E-value=57 Score=34.85 Aligned_cols=61 Identities=20% Similarity=0.263 Sum_probs=43.2
Q ss_pred HHHHHhcccccccEEecccCCCcccCCCc----hHHHHHHHHhhC-CCCeEEEEechHHHHHHHHHHCCCCchhhHHHHH
Q 013861 332 LVEAQADESEGADILLFSVLGSQVKPGLP----YLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMES 406 (435)
Q Consensus 332 lre~~~D~~EGADilM~~~~~~~VKPal~----YLDIIr~vk~~~-~lPvaaYqVSGEYaMikaAa~~G~ide~~~v~Es 406 (435)
+..+..=++.|+|+|. |-=+.- -+|.|+.+|+.+ ++||.|=+|- + .|.
T Consensus 283 ~eR~~aLv~AGvD~iv-------iD~ahGhs~~v~~~i~~ik~~~p~~~viaGNVa---------------T-----~e~ 335 (556)
T 4af0_A 283 KDRLKLLAEAGLDVVV-------LDSSQGNSVYQIEFIKWIKQTYPKIDVIAGNVV---------------T-----REQ 335 (556)
T ss_dssp HHHHHHHHHTTCCEEE-------ECCSCCCSHHHHHHHHHHHHHCTTSEEEEEEEC---------------S-----HHH
T ss_pred HHHHHHHHhcCCcEEE-------EeccccccHHHHHHHHHHHhhCCcceEEecccc---------------C-----HHH
Confidence 3333333568999999 544433 399999999999 6999999882 2 234
Q ss_pred HHHHHHhcccEee
Q 013861 407 LMCLRRAGADIIL 419 (435)
Q Consensus 407 l~~ikRAGAd~Ii 419 (435)
-..+.+||||.|.
T Consensus 336 a~~Li~aGAD~vk 348 (556)
T 4af0_A 336 AAQLIAAGADGLR 348 (556)
T ss_dssp HHHHHHHTCSEEE
T ss_pred HHHHHHcCCCEEe
Confidence 4456778999984
No 362
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=35.99 E-value=62 Score=36.90 Aligned_cols=219 Identities=15% Similarity=0.113 Sum_probs=123.9
Q ss_pred HHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeec-CCC
Q 013861 159 LVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVR-EDG 237 (435)
Q Consensus 159 l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTshGHcGIv~-e~g 237 (435)
..+.++.+++.|+.-|-+|--+.+ --....+++.+|+.. -++-.++|.+.+ ++. ++.
T Consensus 629 ~~~~v~~a~~~Gvd~irif~~~sd-------------~~~~~~~~~~~~e~g----~~~~~~i~~~~~-----~~~pe~~ 686 (1150)
T 3hbl_A 629 IHKFVQESAKAGIDVFRIFDSLNW-------------VDQMKVANEAVQEAG----KISEGTICYTGD-----ILNPERS 686 (1150)
T ss_dssp HHHHHHHHHHTTCCEEEEECTTCC-------------GGGGHHHHHHHHHTT----CEEEEEEECCSC-----TTCTTTC
T ss_pred HHHHHHHHHhCCcCEEEEEeeCCH-------------HHHHHHHHHHHHHHh----hheeEEEeeccc-----ccChhhc
Confidence 566799999999999988854222 112356777777763 334456666532 232 122
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC--------chHHHHHHHHHHC-CC--CCceeechhhhhcccccccch
Q 013861 238 VIMNDETVHQLCKQAVSQARAGADVVSPSDMMD--------GRVGAIRAALDAE-GF--QHVSIMSYTAKYASSFYGPFR 306 (435)
Q Consensus 238 ~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMMD--------GrVgAIR~aLD~~-Gf--~~v~IMSYSaKyASafYGPFR 306 (435)
.. -|++.+.+.+-...++|||+|+-.||.= -.|.++|+.++-. ++ +|+.=|+.+.-.+..-.|-=
T Consensus 687 ~~---~~~~~~~~~a~~~~~~Ga~~i~l~Dt~G~~~P~~~~~lv~~l~~~~~~~i~~H~Hnt~G~a~An~laA~~aGa~- 762 (1150)
T 3hbl_A 687 NI---YTLEYYVKLAKELEREGFHILAIKDMAGLLKPKAAYELIGELKSAVDLPIHLHTHDTSGNGLLTYKQAIDAGVD- 762 (1150)
T ss_dssp SS---SSHHHHHHHHHHHHHTTCSEEEEEETTCCCCHHHHHHHHHHHHHHCCSCEEEEECBTTSCHHHHHHHHHHTTCS-
T ss_pred CC---CCHHHHHHHHHHHHHcCCCeeeEcCccCCCCHHHHHHHHHHHHHhcCCeEEEEeCCCCcHHHHHHHHHHHhCCC-
Confidence 22 3566677777777899999999999874 2456666665210 11 45555777666666666643
Q ss_pred hhhcCCCC-CCCccccCCCCCCHHHHHHHHHhc--ccccccEEecccCCCcccCCCchHHHHHHHHhh---CCCC-----
Q 013861 307 EALDSNPR-FGDKKTYQMNPANYREALVEAQAD--ESEGADILLFSVLGSQVKPGLPYLDVIRLLRDK---YPLP----- 375 (435)
Q Consensus 307 dA~~Sap~-fgDRktYQmdp~N~~EAlre~~~D--~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~---~~lP----- 375 (435)
.++++-. +| .+++|- .-|.+..+... ++-|-|+=. +. ..-+.+.+++.. |.-+
T Consensus 763 -~vD~ai~GlG-~~~gn~----~lE~lv~~L~~~g~~tgidl~~-------l~---~~~~~~~~~~~~y~~~~~~~~~~~ 826 (1150)
T 3hbl_A 763 -IIDTAVASMS-GLTSQP----SANSLYYALNGFPRHLRTDIEG-------ME---SLSHYWSTVRTYYSDFESDIKSPN 826 (1150)
T ss_dssp -EEEEBCGGGC-SBTSCC----BHHHHHHHTTTSSCCBCSCHHH-------HH---HHHHHHHHHHGGGGGGCCSCCSCC
T ss_pred -EEEEeccccC-CCCCCc----cHHHHHHHHHhcCCCcCccHHH-------HH---HHHHHHHHHHhhhccccCCCCCCc
Confidence 3444433 44 446664 23444444432 222333222 11 123334455543 2222
Q ss_pred --eEEEEech-HHH-HHHHHHHCCCCchhhHHHHHHHHHHHhcccEee
Q 013861 376 --IAAYQVSG-EYS-MIKAGGALKMIDEQRVMMESLMCLRRAGADIIL 419 (435)
Q Consensus 376 --vaaYqVSG-EYa-MikaAa~~G~ide~~~v~Esl~~ikRAGAd~Ii 419 (435)
|--||+-| -|+ |...+.+.|+.|.=.-|+|.+-..++-.-+++.
T Consensus 827 ~~v~~~~~PGg~~snl~~q~~~~g~~~~~~~v~~~~~~v~~~~g~~~~ 874 (1150)
T 3hbl_A 827 TEIYQHEMPGGQYSNLSQQAKSLGLGERFDEVKDMYRRVNFLFGDIVK 874 (1150)
T ss_dssp TTHHHHCCCSSHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTSCCC
T ss_pred cceEEeeCCCchhhHHHHHHHHCCcHhHHHHHHHHHHHHHHHcCCCce
Confidence 44567766 354 444588899998766666666666655555553
No 363
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=35.72 E-value=85 Score=24.36 Aligned_cols=63 Identities=11% Similarity=0.091 Sum_probs=42.4
Q ss_pred CCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhC-CCCeEEEEechHHHHHHHHHHCC
Q 013861 326 ANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALK 395 (435)
Q Consensus 326 ~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~-~lPvaaYqVSGEYaMikaAa~~G 395 (435)
.|..||+..... +..|+++... -=|++.=+|+++.+++.. .+|+...--..+......+...|
T Consensus 31 ~~~~~a~~~~~~---~~~dlvl~D~----~lp~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~~ 94 (139)
T 2jk1_A 31 QGAEAAIAILEE---EWVQVIICDQ----RMPGRTGVDFLTEVRERWPETVRIIITGYTDSASMMAAINDA 94 (139)
T ss_dssp SSHHHHHHHHHH---SCEEEEEEES----CCSSSCHHHHHHHHHHHCTTSEEEEEESCTTCHHHHHHHHHT
T ss_pred CCHHHHHHHHhc---CCCCEEEEeC----CCCCCcHHHHHHHHHHhCCCCcEEEEeCCCChHHHHHHHHhh
Confidence 467787766653 4589988111 126677789999999876 58988876666655555555543
No 364
>2i1o_A Nicotinate phosphoribosyltransferase; ZIN ION, zinc finger M structural genomics, PSI, protein structure initiative; 2.40A {Thermoplasma acidophilum} PDB: 1ytd_A* 1yte_A* 1ytk_A
Probab=35.63 E-value=73 Score=32.11 Aligned_cols=66 Identities=18% Similarity=0.182 Sum_probs=39.6
Q ss_pred HHHHHHHHHHCCC---eEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHc--CCCeecCCCCCC--c-
Q 013861 200 PRTIWLLKDRYPD---LVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARA--GADVVSPSDMMD--G- 271 (435)
Q Consensus 200 ~raIr~iK~~~Pd---l~IitDVcLc~YTshGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~A--GADiVAPSDMMD--G- 271 (435)
..|++..++.||+ +++-+| .|.+ -.+.|+..|++ |+|+|=.-.|-. |
T Consensus 197 ~~A~~~~~~~~p~~~~~~vlvD----T~d~---------------------~~~~al~~a~~l~~~d~IrlDs~~~~~gd 251 (398)
T 2i1o_A 197 EEAWKLTLENTKNGQKSVLLID----TYMD---------------------EKFAAIKIAEMFDKVDYIRLDTPSSRRGN 251 (398)
T ss_dssp HHHHHHHHHTCCTTSCCEEECC----SSSC---------------------HHHHHHHHHTTCSCCCEEEECCCGGGCSC
T ss_pred HHHHHHHHHhCCCCCCEEEEEc----CchH---------------------HHHHHHHHHHhhcCCcEEEeCCCCCCccc
Confidence 6799999999996 333333 3311 12344555555 777776655532 2
Q ss_pred ---hHHHHHHHHHHCCCCCcee
Q 013861 272 ---RVGAIRAALDAEGFQHVSI 290 (435)
Q Consensus 272 ---rVgAIR~aLD~~Gf~~v~I 290 (435)
-|..+|+.||+.||.++.|
T Consensus 252 ~~~~v~~v~~~ld~~G~~~~~I 273 (398)
T 2i1o_A 252 FEALIREVRWELALRGRSDIKI 273 (398)
T ss_dssp HHHHHHHHHHHHHHTTCTTSEE
T ss_pred HHHHHHHHHHHHHhCCCCceEE
Confidence 3455777777777765543
No 365
>4gqr_A Pancreatic alpha-amylase; glycosyl hydrolase, diabetes, obesity, digestion, glycosidas inhibition, flavonol, drug design; HET: NAG MYC; 1.20A {Homo sapiens} PDB: 1cpu_A* 1bsi_A 1u2y_A* 1u30_A* 1u33_A* 1xcw_A* 1xcx_A* 1xd0_A* 1xd1_A* 2qmk_A* 2qv4_A* 3bai_A* 3baj_A* 3baw_A* 3ij7_A* 1hny_A* 3ij9_A* 3ij8_A* 4gqq_A* 1kgw_A* ...
Probab=35.47 E-value=35 Score=32.82 Aligned_cols=70 Identities=13% Similarity=0.187 Sum_probs=44.7
Q ss_pred eechhhhHHHHHHH-HHHcCCCeEEEeecCCCCCCCcccCc---CcCCCCC-----------HHHHHHHHHHHCCCeEEE
Q 013861 152 RLGWRHGLVQEVAK-ARDVGVNSVVLFPKVPDALKSPTGDE---AYNDNGL-----------VPRTIWLLKDRYPDLVIY 216 (435)
Q Consensus 152 r~s~~~~l~~~v~~-~~~~GI~sv~LFgvi~~~~Kd~~Gs~---A~~~~g~-----------v~raIr~iK~~~Pdl~Ii 216 (435)
-|.++ +|.+|+++ +.++|+++|-|=|+......+..|.. .|.+-.. ..+.|+.++++ .|-||
T Consensus 18 ~W~w~-~ia~e~~~yl~~~G~~~v~~~P~~e~~~~~~~~~~~~~~Y~~~dy~i~~~~Gt~~df~~lv~~aH~~--Gi~Vi 94 (496)
T 4gqr_A 18 EWRWV-DIALECERYLAPKGFGGVQVSPPNENVAIYNPFRPWWERYQPVSYKLCTRSGNEDEFRNMVTRCNNV--GVRIY 94 (496)
T ss_dssp TCCHH-HHHHHHHHTTTTTTCCEEEECCCSCBBCCTTTTSCGGGGGSBSCSCSCBTTBCHHHHHHHHHHHHHT--TCEEE
T ss_pred CCCHH-HHHHHHHHHHHHhCCCEEEeCccccCccCCCCCCCcccccCccCceeCCCCCCHHHHHHHHHHHHHC--CCEEE
Confidence 34675 58889887 99999999999885321111111221 3333222 45667777666 69999
Q ss_pred eeecccCC
Q 013861 217 TDVALDPY 224 (435)
Q Consensus 217 tDVcLc~Y 224 (435)
.|+-+-+.
T Consensus 95 lD~V~NH~ 102 (496)
T 4gqr_A 95 VDAVINHM 102 (496)
T ss_dssp EEECCSEE
T ss_pred EEEccCcC
Confidence 99988663
No 366
>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2
Probab=35.46 E-value=40 Score=30.08 Aligned_cols=60 Identities=18% Similarity=0.160 Sum_probs=37.5
Q ss_pred cccccEEeccc----CCCcccCCCchHHHHHHHHhhC-----CCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHH
Q 013861 340 SEGADILLFSV----LGSQVKPGLPYLDVIRLLRDKY-----PLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCL 410 (435)
Q Consensus 340 ~EGADilM~~~----~~~~VKPal~YLDIIr~vk~~~-----~lPvaaYqVSGEYaMikaAa~~G~ide~~~v~Esl~~i 410 (435)
.+|+|+|++.. .+.|.++. .-++-|+++|+.+ ++|+.+ .|-|+. |....+
T Consensus 138 ~~~~d~vl~~~~~pg~~g~~~~~-~~~~~i~~l~~~~~~~~~~~pi~v---------------~GGI~~-----~n~~~~ 196 (230)
T 1rpx_A 138 LDAVDLVLIMSVNPGFGGQSFIE-SQVKKISDLRKICAERGLNPWIEV---------------DGGVGP-----KNAYKV 196 (230)
T ss_dssp TTTCSEEEEESSCTTCSSCCCCT-THHHHHHHHHHHHHHHTCCCEEEE---------------ESSCCT-----TTHHHH
T ss_pred HhhCCEEEEEEEcCCCCCccccH-HHHHHHHHHHHHHHhcCCCceEEE---------------ECCCCH-----HHHHHH
Confidence 46899884322 33444432 3577888888766 688643 355665 444556
Q ss_pred HHhcccEeeh
Q 013861 411 RRAGADIILT 420 (435)
Q Consensus 411 kRAGAd~IiT 420 (435)
.++|||.|+-
T Consensus 197 ~~aGad~vvv 206 (230)
T 1rpx_A 197 IEAGANALVA 206 (230)
T ss_dssp HHHTCCEEEE
T ss_pred HHcCCCEEEE
Confidence 7789998764
No 367
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}
Probab=35.24 E-value=27 Score=32.89 Aligned_cols=90 Identities=20% Similarity=0.343 Sum_probs=57.3
Q ss_pred ccCCCCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEee--e-
Q 013861 143 PIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTD--V- 219 (435)
Q Consensus 143 ~I~sMPGv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitD--V- 219 (435)
.+..|||+. -..|+..++++|...|.+||- . ..| | ...|+.|+..||++-++.= |
T Consensus 127 gi~~ipGv~-------TptEi~~A~~~Gad~vK~FPa--~----~~g-------G--~~~lkal~~p~p~ip~~ptGGI~ 184 (232)
T 4e38_A 127 GIDIVPGVN-------NPSTVEAALEMGLTTLKFFPA--E----ASG-------G--ISMVKSLVGPYGDIRLMPTGGIT 184 (232)
T ss_dssp TCEEECEEC-------SHHHHHHHHHTTCCEEEECST--T----TTT-------H--HHHHHHHHTTCTTCEEEEBSSCC
T ss_pred CCCEEcCCC-------CHHHHHHHHHcCCCEEEECcC--c----ccc-------C--HHHHHHHHHHhcCCCeeeEcCCC
Confidence 567889983 267899999999999999994 1 011 2 3789999999999766642 2
Q ss_pred --cccCCCCCCcceeecCCCccc--------cHHHHHHHHHHHHHH
Q 013861 220 --ALDPYSSDGHDGIVREDGVIM--------NDETVHQLCKQAVSQ 255 (435)
Q Consensus 220 --cLc~YTshGHcGIv~e~g~Id--------ND~Tv~~Lak~Avs~ 255 (435)
.+.+|-..|=.+.+- .+.+- |=+.+..++++++..
T Consensus 185 ~~n~~~~l~aGa~~~vg-Gs~l~~~~~i~~~~~~~i~~~a~~~~~~ 229 (232)
T 4e38_A 185 PSNIDNYLAIPQVLACG-GTWMVDKKLVTNGEWDEIARLTREIVEQ 229 (232)
T ss_dssp TTTHHHHHTSTTBCCEE-ECGGGCHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCeEEEE-CchhcChHHhhcCCHHHHHHHHHHHHHH
Confidence 234555666444331 12221 224566677766654
No 368
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=34.94 E-value=1.4e+02 Score=22.40 Aligned_cols=65 Identities=18% Similarity=0.229 Sum_probs=43.4
Q ss_pred CHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhh--C-CCCeEEEEechHHHHHHHHHHCCCCc
Q 013861 327 NYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDK--Y-PLPIAAYQVSGEYSMIKAGGALKMID 398 (435)
Q Consensus 327 N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~--~-~lPvaaYqVSGEYaMikaAa~~G~id 398 (435)
|..||+..... ...|+++... --|.+.-+++++.+++. . .+|+...--..+...+..+.+.|..+
T Consensus 37 ~~~~a~~~~~~---~~~dlvi~D~----~l~~~~g~~l~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~ 104 (128)
T 1jbe_A 37 DGVDALNKLQA---GGYGFVISDW----NMPNMDGLELLKTIRAXXAMSALPVLMVTAEAKKENIIAAAQAGASG 104 (128)
T ss_dssp SHHHHHHHHTT---CCCCEEEEES----CCSSSCHHHHHHHHHC--CCTTCCEEEEESSCCHHHHHHHHHTTCSE
T ss_pred CHHHHHHHHHh---cCCCEEEEeC----CCCCCCHHHHHHHHHhhcccCCCcEEEEecCccHHHHHHHHHhCcCc
Confidence 66777766542 4579888211 12667779999999973 3 58998877666666666666666654
No 369
>3uhf_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich fold, isomerase; HET: DGL; 1.83A {Campylobacter jejuni} PDB: 3uho_A* 3uhp_A
Probab=34.84 E-value=47 Score=31.76 Aligned_cols=163 Identities=15% Similarity=0.147 Sum_probs=94.7
Q ss_pred HHHHHHHHCC--CeEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCC-C----------
Q 013861 202 TIWLLKDRYP--DLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSD-M---------- 268 (435)
Q Consensus 202 aIr~iK~~~P--dl~IitDVcLc~YTshGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSD-M---------- 268 (435)
..|.|++..| +++-+.|.+-+|| |.=+-|+-.+.+.+.+-.+.++|||+|.=-. -
T Consensus 39 v~~~i~~~lP~e~~iy~~D~a~~PY------------G~ks~e~i~~~~~~~~~~L~~~g~d~IVIACNTa~~~al~~lr 106 (274)
T 3uhf_A 39 VLKSLYEARLFDEIIYYGDTARVPY------------GVKDKDTIIKFCLEALDFFEQFQIDMLIIACNTASAYALDALR 106 (274)
T ss_dssp HHHHHHHTTCCSEEEEEECTTTCCC------------TTSCHHHHHHHHHHHHHHHTTSCCSEEEECCHHHHHHSHHHHH
T ss_pred HHHHHHHHCCCCCEEEEecCCCCCC------------CCCCHHHHHHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHH
Confidence 5788888899 4888999999999 3334455555666666667778999874211 0
Q ss_pred ------CCchH-HHHHHHHHH--CCCCCceeechhhhhcccccccchhhhcCC----------CCCCCc-cccCCCCCCH
Q 013861 269 ------MDGRV-GAIRAALDA--EGFQHVSIMSYTAKYASSFYGPFREALDSN----------PRFGDK-KTYQMNPANY 328 (435)
Q Consensus 269 ------MDGrV-gAIR~aLD~--~Gf~~v~IMSYSaKyASafYGPFRdA~~Sa----------p~fgDR-ktYQmdp~N~ 328 (435)
.=|-| .+++.+... .+..+|+||+=.+--.|.+|- +.+... |.|-.. ..-..+-...
T Consensus 107 ~~~~iPvigiiepa~~~a~~~~~t~~~~IGVLaT~~Ti~s~~Y~---~~l~~~~~~~V~~~~~~~lV~~IE~g~~~~~~~ 183 (274)
T 3uhf_A 107 AKAHFPVYGVIDAGVEATIKALHDKNKEILVIATKATIKSEEYQ---KRLLSQGYTNINALATGLFVPMVEEGIFEGDFL 183 (274)
T ss_dssp HHCSSCEECSHHHHHHHHHHHHCCTTSCEEEEECHHHHHHTHHH---HHHHTTTCCCEEEEECTTHHHHHHTTCCSSHHH
T ss_pred HhcCCCEEcCCHHHHHHHHHhcccCCCeEEEEeccccccHHHHH---HHHHHcCCceEEecCCHHHHHHHHcCCCCCHHH
Confidence 11555 566777766 566899999877767776663 222221 211000 0000111124
Q ss_pred HHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhC--CCCeEEEEechHHHHHHHHH
Q 013861 329 REALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKY--PLPIAAYQVSGEYSMIKAGG 392 (435)
Q Consensus 329 ~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~--~lPvaaYqVSGEYaMikaAa 392 (435)
++.+++....+. |+|.|+ ||-. -|--+...+++.+ ++|+ |.+-.++.+++.
T Consensus 184 ~~~~~~~l~~l~-g~D~iI---LGCT-----h~PlL~~~i~~~~~~~v~l----IDs~~~~A~~~~ 236 (274)
T 3uhf_A 184 QSAMEYYFKNIT-TPDALI---LACT-----HFPLLGRSLSKYFGDKTKL----IHSGDAIVEFLK 236 (274)
T ss_dssp HHHHHHHHTTCC-CCSEEE---ECST-----TGGGGHHHHHHHHCTTCEE----EEHHHHHHHHHH
T ss_pred HHHHHHHHHHhc-CCCEEE---ECCC-----ChHHHHHHHHHHcCCCCEE----EcCHHHHHHHHH
Confidence 567777777777 999998 5543 2322333444433 3443 455555555543
No 370
>4aie_A Glucan 1,6-alpha-glucosidase; hydrolase, glycoside hydrolase 13; HET: MES GOL; 2.05A {Lactobacillus acidophilus ncfm}
Probab=34.62 E-value=54 Score=32.34 Aligned_cols=60 Identities=18% Similarity=0.369 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCC---------C---HHHHHHHHHHHCCCeEEEeeecccC
Q 013861 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNG---------L---VPRTIWLLKDRYPDLVIYTDVALDP 223 (435)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g---------~---v~raIr~iK~~~Pdl~IitDVcLc~ 223 (435)
++.+.+.-+.++||++|-|-|+.+. +.....|+.-+ - +.+-|+.++++ .|-||-|+-+-+
T Consensus 33 Gi~~kLdYLk~LGvt~I~L~Pi~~~----~~~~~GYd~~dy~~vdp~~Gt~~dfk~Lv~~aH~~--Gi~VilD~V~NH 104 (549)
T 4aie_A 33 GIISRLDYLEKLGIDAIWLSPVYQS----PGVDNGYDISDYEAIDPQYGTMADMDELISKAKEH--HIKIVMDLVVNH 104 (549)
T ss_dssp HHHTTHHHHHHHTCSEEEECCCEEC----CCTTTTSSCSEEEEECTTTCCHHHHHHHHHHHHHT--TCEEEEEECCSB
T ss_pred HHHHhhHHHHHCCCCEEEeCCCcCC----CCCCCCcCccCCCCcCcccCCHHHHHHHHHHHHHC--CCEEEEEECccC
Confidence 6788888999999999999886432 22233343322 2 34555555555 699999998755
No 371
>2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A*
Probab=34.61 E-value=50 Score=31.22 Aligned_cols=91 Identities=15% Similarity=0.178 Sum_probs=52.9
Q ss_pred HHHHHHHHHcCCCeEEEeecCCCC-CCCcccCcCcCCCC---CHHHHHHHHHHHCCCeEEEeeecc---cCCCCCCccee
Q 013861 160 VQEVAKARDVGVNSVVLFPKVPDA-LKSPTGDEAYNDNG---LVPRTIWLLKDRYPDLVIYTDVAL---DPYSSDGHDGI 232 (435)
Q Consensus 160 ~~~v~~~~~~GI~sv~LFgvi~~~-~Kd~~Gs~A~~~~g---~v~raIr~iK~~~Pdl~IitDVcL---c~YTshGHcGI 232 (435)
.+.++.+++.|++.|-+|...++. .+...+. +.+. .+.++|+.+|+.. +-|..+++. |||
T Consensus 83 ~~~i~~a~~ag~~~v~i~~~~sd~~~~~~~~~---~~~e~l~~~~~~i~~a~~~G--~~v~~~l~~~~~~~~-------- 149 (298)
T 2cw6_A 83 LKGFEAAVAAGAKEVVIFGAASELFTKKNINC---SIEESFQRFDAILKAAQSAN--ISVRGYVSCALGCPY-------- 149 (298)
T ss_dssp HHHHHHHHHTTCSEEEEEEESCHHHHHHHHSC---CHHHHHHHHHHHHHHHHHTT--CEEEEEEETTTCBTT--------
T ss_pred HHhHHHHHHCCCCEEEEEecCCHHHHHHHhCC---CHHHHHHHHHHHHHHHHHCC--CeEEEEEEEEeeCCc--------
Confidence 456888999999999999864421 0000000 1112 2345667777764 445555553 343
Q ss_pred ecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC
Q 013861 233 VREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMD 270 (435)
Q Consensus 233 v~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMMD 270 (435)
.|.. | .+.+.+.+-...++|||.|.-.|+.-
T Consensus 150 ---~~~~-~---~~~~~~~~~~~~~~Ga~~i~l~DT~G 180 (298)
T 2cw6_A 150 ---EGKI-S---PAKVAEVTKKFYSMGCYEISLGDTIG 180 (298)
T ss_dssp ---TBSC-C---HHHHHHHHHHHHHTTCSEEEEEETTS
T ss_pred ---CCCC-C---HHHHHHHHHHHHHcCCCEEEecCCCC
Confidence 2332 2 34455555556789999999888763
No 372
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=34.59 E-value=50 Score=25.68 Aligned_cols=63 Identities=19% Similarity=0.164 Sum_probs=37.9
Q ss_pred CCHHHHHHHHHhcccccccEEecccCCCccc---CCCchHHHHHHHHhhC---CCCeEEEEechHHHHHHHHHHCCCCc
Q 013861 326 ANYREALVEAQADESEGADILLFSVLGSQVK---PGLPYLDVIRLLRDKY---PLPIAAYQVSGEYSMIKAGGALKMID 398 (435)
Q Consensus 326 ~N~~EAlre~~~D~~EGADilM~~~~~~~VK---Pal~YLDIIr~vk~~~---~lPvaaYqVSGEYaMikaAa~~G~id 398 (435)
.|..||+..... ..-|+|+ +- |.+.=+++++.+|+.. .+|+...--..+-..+..+.+.|..+
T Consensus 33 ~~~~~a~~~~~~---~~~dlvi-------~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~ 101 (140)
T 3n53_A 33 KNEKEALEQIDH---HHPDLVI-------LDMDIIGENSPNLCLKLKRSKGLKNVPLILLFSSEHKEAIVNGLHSGADD 101 (140)
T ss_dssp SSHHHHHHHHHH---HCCSEEE-------EETTC------CHHHHHHTSTTCTTCCEEEEECC----CTTTTTTCCCSE
T ss_pred CCHHHHHHHHhc---CCCCEEE-------EeCCCCCCcHHHHHHHHHcCcccCCCCEEEEecCCCHHHHHHHHhcCCCe
Confidence 477888877654 4589999 44 5556688999999874 69999887666555555556666543
No 373
>3ldv_A Orotidine 5'-phosphate decarboxylase; structural genomics, infectious diseases; 1.77A {Vibrio cholerae o1 biovar el tor} PDB: 3uwq_A*
Probab=34.59 E-value=24 Score=33.65 Aligned_cols=48 Identities=17% Similarity=0.181 Sum_probs=34.2
Q ss_pred ccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCch-----HHHHHHHHhhCCCCeEE
Q 013861 320 TYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPY-----LDVIRLLRDKYPLPIAA 378 (435)
Q Consensus 320 tYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~Y-----LDIIr~vk~~~~lPvaa 378 (435)
--=+|..+.+||+.-++. +. -.+.+ +|+++.+ .++|+.+|+. +.+|++
T Consensus 31 ivALD~~~~~~al~l~~~-l~--~~v~~-------~KvG~~l~~~~G~~~v~~Lk~~-g~~Vfl 83 (255)
T 3ldv_A 31 IVALDYDNLADALAFVDK-ID--PSTCR-------LKVGKEMFTLFGPDFVRELHKR-GFSVFL 83 (255)
T ss_dssp EEEECCSSHHHHHHHHTT-SC--GGGCE-------EEEEHHHHHHHHHHHHHHHHHT-TCCEEE
T ss_pred EEEcCCCCHHHHHHHHHH-hC--CcCcE-------EEeCHHHHHhhCHHHHHHHHhc-CCCEEE
Confidence 344688899998877653 33 23557 8999876 6889999875 667664
No 374
>1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp}
Probab=34.44 E-value=49 Score=31.82 Aligned_cols=140 Identities=16% Similarity=0.148 Sum_probs=75.6
Q ss_pred HHHHHHHHcCCCeEEEeecCCCC-CCCcccCcCcCCC---CCHHHHHHHHHHHCCCeEEEeeecc---cCCCCCCcceee
Q 013861 161 QEVAKARDVGVNSVVLFPKVPDA-LKSPTGDEAYNDN---GLVPRTIWLLKDRYPDLVIYTDVAL---DPYSSDGHDGIV 233 (435)
Q Consensus 161 ~~v~~~~~~GI~sv~LFgvi~~~-~Kd~~Gs~A~~~~---g~v~raIr~iK~~~Pdl~IitDVcL---c~YTshGHcGIv 233 (435)
+.++.+++.|++.|-+|..+.+. .+-..+. +.+ ..+.++|+.+|+..- .|-..++. |||
T Consensus 85 ~~i~~a~~~g~~~v~i~~~~sd~~~~~~l~~---s~~e~l~~~~~~v~~ak~~G~--~v~~~i~~~~~~~~--------- 150 (307)
T 1ydo_A 85 RGLENALEGGINEACVFMSASETHNRKNINK---STSESLHILKQVNNDAQKANL--TTRAYLSTVFGCPY--------- 150 (307)
T ss_dssp HHHHHHHHHTCSEEEEEEESSHHHHHTTTCS---CHHHHHHHHHHHHHHHHHTTC--EEEEEEECTTCBTT---------
T ss_pred HhHHHHHhCCcCEEEEEeecCHHHHHHHhCC---CHHHHHHHHHHHHHHHHHCCC--EEEEEEEEEecCCc---------
Confidence 45788888999999999864421 0001110 111 123456777777643 34444443 554
Q ss_pred cCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC----chHHHHHHHHHHCCCCCceeechhhhhcccccccchhhh
Q 013861 234 REDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMD----GRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREAL 309 (435)
Q Consensus 234 ~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMMD----GrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRdA~ 309 (435)
+|..+ .+.+.+.+-...++|||.|.-.|+.= .+|..+=++|.++ +.++.|
T Consensus 151 --~~~~~----~~~~~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~-~~~~~l------------------- 204 (307)
T 1ydo_A 151 --EKDVP----IEQVIRLSEALFEFGISELSLGDTIGAANPAQVETVLEALLAR-FPANQI------------------- 204 (307)
T ss_dssp --TBCCC----HHHHHHHHHHHHHHTCSCEEEECSSCCCCHHHHHHHHHHHHTT-SCGGGE-------------------
T ss_pred --CCCCC----HHHHHHHHHHHHhcCCCEEEEcCCCCCcCHHHHHHHHHHHHHh-CCCCeE-------------------
Confidence 13332 33455555556688999999998753 2333333333221 211111
Q ss_pred cCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEecccC
Q 013861 310 DSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVL 351 (435)
Q Consensus 310 ~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~ 351 (435)
.+=---++.|-.+|.-.|++ .|||.|=.++.
T Consensus 205 ----~~H~Hnd~Gla~AN~laAv~-------aGa~~vd~tv~ 235 (307)
T 1ydo_A 205 ----ALHFHDTRGTALANMVTALQ-------MGITVFDGSAG 235 (307)
T ss_dssp ----EEECBGGGSCHHHHHHHHHH-------HTCCEEEEBGG
T ss_pred ----EEEECCCCchHHHHHHHHHH-------hCCCEEEEccc
Confidence 01113467777777777753 58888765554
No 375
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=34.30 E-value=87 Score=26.61 Aligned_cols=77 Identities=6% Similarity=0.013 Sum_probs=53.8
Q ss_pred CCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhC-CCCeEEEEechHHHHHHHHHHCCCCc------
Q 013861 326 ANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMID------ 398 (435)
Q Consensus 326 ~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~-~lPvaaYqVSGEYaMikaAa~~G~id------ 398 (435)
.|..||+..... ..-|+++ -|.+.-+|+++.+++.. .+||...--..+...+..|.+.|..+
T Consensus 31 ~~~~~al~~l~~---~~~dlvi--------lp~~~g~~~~~~lr~~~~~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~ 99 (223)
T 2hqr_A 31 ESLEDGEYLMDI---RNYDLVM--------VSDKNALSFVSRIKEKHSSIVVLVSSDNPTSEEEVHAFEQGADDYIAKPY 99 (223)
T ss_dssp SSHHHHHHHHTT---SCCSEEE--------ECCTTHHHHHHHHHHHCTTSEEEEEESSCCHHHHHHHHHHTCSEEEETTC
T ss_pred CCHHHHHHHHhc---CCCCEEE--------eCCCCHHHHHHHHHhCCCCCcEEEEECCCCHHHHHHHHHcCCCEEEECCC
Confidence 466777765543 3578887 37888899999999886 79999988777777777777777654
Q ss_pred -hhhHHHHHHHHHHHh
Q 013861 399 -EQRVMMESLMCLRRA 413 (435)
Q Consensus 399 -e~~~v~Esl~~ikRA 413 (435)
..+.+.+.+..+.+-
T Consensus 100 ~~~~~L~~~i~~~~~~ 115 (223)
T 2hqr_A 100 RSIKALVARIEARLRF 115 (223)
T ss_dssp SCTHHHHHHHHHHTSS
T ss_pred CCHHHHHHHHHHHhcc
Confidence 223445555555443
No 376
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=34.18 E-value=1.1e+02 Score=25.73 Aligned_cols=81 Identities=17% Similarity=0.197 Sum_probs=56.5
Q ss_pred CCCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhC-CCCeEEEEechHHHHHHHHHHCCCCch----
Q 013861 325 PANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMIDE---- 399 (435)
Q Consensus 325 p~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~-~lPvaaYqVSGEYaMikaAa~~G~ide---- 399 (435)
..|..||+..... ...|+|+... -=|++.=+++++.+|+.. ..|+...-..++...+..+.+.|..|.
T Consensus 37 ~~~~~~al~~~~~---~~~dlvllD~----~lp~~~g~~~~~~lr~~~~~~~ii~ls~~~~~~~~~~~~~~Ga~~~l~Kp 109 (215)
T 1a04_A 37 ASNGEQGIELAES---LDPDLILLDL----NMPGMNGLETLDKLREKSLSGRIVVFSVSNHEEDVVTALKRGADGYLLKD 109 (215)
T ss_dssp ESSHHHHHHHHHH---HCCSEEEEET----TSTTSCHHHHHHHHHHSCCCSEEEEEECCCCHHHHHHHHHTTCSEEEETT
T ss_pred eCCHHHHHHHHHh---cCCCEEEEeC----CCCCCcHHHHHHHHHHhCCCCcEEEEECCCCHHHHHHHHHcCCcEEEeCC
Confidence 4577888876643 3579998211 126677799999999876 589999888877778888888887542
Q ss_pred --hhHHHHHHHHHHH
Q 013861 400 --QRVMMESLMCLRR 412 (435)
Q Consensus 400 --~~~v~Esl~~ikR 412 (435)
.+.+.+.+..+.+
T Consensus 110 ~~~~~L~~~i~~~~~ 124 (215)
T 1a04_A 110 MEPEDLLKALHQAAA 124 (215)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHc
Confidence 2345555555544
No 377
>1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4
Probab=34.07 E-value=1.2e+02 Score=28.31 Aligned_cols=54 Identities=26% Similarity=0.265 Sum_probs=33.3
Q ss_pred cccccEEecccCCCccc--CCC--chHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcc
Q 013861 340 SEGADILLFSVLGSQVK--PGL--PYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGA 415 (435)
Q Consensus 340 ~EGADilM~~~~~~~VK--Pal--~YLDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G~ide~~~v~Esl~~ikRAGA 415 (435)
+.||+.|- |- +.. -.++-++.+++.+++||-. - -+.+|+.+ +.| .+.+||
T Consensus 76 ~~GA~~is-------vlt~~~~f~G~~~~l~~i~~~v~lPvl~---k-----------dfI~d~~q-i~~----a~~~GA 129 (254)
T 1vc4_A 76 RGGARAVS-------VLTEPHRFGGSLLDLKRVREAVDLPLLR---K-----------DFVVDPFM-LEE----ARAFGA 129 (254)
T ss_dssp HTTCSEEE-------EECCCSSSCCCHHHHHHHHHHCCSCEEE---E-----------SCCCSHHH-HHH----HHHTTC
T ss_pred HcCCCEEE-------EecchhhhccCHHHHHHHHHhcCCCEEE---C-----------CcCCCHHH-HHH----HHHcCC
Confidence 57899998 41 111 1566777778899999853 2 24555533 222 456688
Q ss_pred cEee
Q 013861 416 DIIL 419 (435)
Q Consensus 416 d~Ii 419 (435)
|.|+
T Consensus 130 D~Vl 133 (254)
T 1vc4_A 130 SAAL 133 (254)
T ss_dssp SEEE
T ss_pred CEEE
Confidence 8775
No 378
>1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/P initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A*
Probab=33.71 E-value=1e+02 Score=29.45 Aligned_cols=93 Identities=17% Similarity=0.161 Sum_probs=52.4
Q ss_pred hhhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEecccC-C---CcccCCCc---hHHHHHHHHhhCCCCeEE
Q 013861 306 REALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVL-G---SQVKPGLP---YLDVIRLLRDKYPLPIAA 378 (435)
Q Consensus 306 RdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~-~---~~VKPal~---YLDIIr~vk~~~~lPvaa 378 (435)
|+.....|.+|.+...|+...+.+++.+.++. -|+|.+...+- + -+ .|... ++++|+.+|+ .++||.+
T Consensus 112 ~~~~~d~pv~~~~~~~q~~~~~~~~~~~a~~~---~~~~a~~i~~n~~~~~~~-~~~~~~~~~~~~i~~vr~-~~~Pv~v 186 (332)
T 1vcf_A 112 RKVAPKALLIANLGLAQLRRYGRDDLLRLVEM---LEADALAFHVNPLQEAVQ-RGDTDFRGLVERLAELLP-LPFPVMV 186 (332)
T ss_dssp TTTCSSSCEEEEEEGGGGGTCCHHHHHHHHHH---HTCSEEEEECCHHHHHHT-TSCCCCTTHHHHHHHHCS-CSSCEEE
T ss_pred eccCCCceeecccChhhhhccChHHHHHHHhh---cCCCceeeccchHHHHhc-CCCccHHHHHHHHHHHHc-CCCCEEE
Confidence 44333456666666667755444554443322 25665531110 0 01 34433 5899999999 9999987
Q ss_pred EEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEeeh
Q 013861 379 YQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILT 420 (435)
Q Consensus 379 YqVSGEYaMikaAa~~G~ide~~~v~Esl~~ikRAGAd~IiT 420 (435)
=-|+ .|+ .. |....+..+|+|.|+-
T Consensus 187 K~v~-----------~g~-~~-----e~a~~~~~~G~d~I~v 211 (332)
T 1vcf_A 187 KEVG-----------HGL-SR-----EAALALRDLPLAAVDV 211 (332)
T ss_dssp ECSS-----------SCC-CH-----HHHHHHTTSCCSEEEC
T ss_pred EecC-----------CCC-CH-----HHHHHHHHcCCCEEEe
Confidence 4343 233 22 2234677899998853
No 379
>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A*
Probab=33.67 E-value=33 Score=32.60 Aligned_cols=88 Identities=15% Similarity=0.146 Sum_probs=0.0
Q ss_pred hcccccccchhhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhCC---
Q 013861 297 YASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYP--- 373 (435)
Q Consensus 297 yASafYGPFRdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~~--- 373 (435)
++.+...+++.+....| +.+.-.+-..+.+|+..... .|||+|| +-+ .-++-++++++..+
T Consensus 164 ~~g~~~~ai~~~r~~~~---~~~~i~vev~tlee~~~A~~----aGaD~I~-------ld~--~~~~~l~~~v~~l~~~~ 227 (273)
T 2b7n_A 164 HVKDLKSFLTHARKNLP---FTAKIEIECESFEEAKNAMN----AGADIVM-------CDN--LSVLETKEIAAYRDAHY 227 (273)
T ss_dssp TCSSHHHHHHHHGGGSC---TTCCEEEEESSHHHHHHHHH----HTCSEEE-------EET--CCHHHHHHHHHHHHHHC
T ss_pred HhCCHHHHHHHHHHhCC---CCceEEEEcCCHHHHHHHHH----cCCCEEE-------ECC--CCHHHHHHHHHHhhccC
Q ss_pred --CCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEeeh
Q 013861 374 --LPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILT 420 (435)
Q Consensus 374 --lPvaaYqVSGEYaMikaAa~~G~ide~~~v~Esl~~ikRAGAd~IiT 420 (435)
+|+.| .|-++++++- .+..+|||.|-+
T Consensus 228 ~~~~i~A---------------sGGI~~~ni~-----~~~~aGaD~i~v 256 (273)
T 2b7n_A 228 PFVLLEA---------------SGNISLESIN-----AYAKSGVDAISV 256 (273)
T ss_dssp TTCEEEE---------------ESSCCTTTHH-----HHHTTTCSEEEC
T ss_pred CCcEEEE---------------ECCCCHHHHH-----HHHHcCCcEEEE
No 380
>4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A
Probab=33.61 E-value=56 Score=31.75 Aligned_cols=54 Identities=17% Similarity=0.259 Sum_probs=30.1
Q ss_pred HHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEee
Q 013861 160 VQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTD 218 (435)
Q Consensus 160 ~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitD 218 (435)
.+.++..-+.|...+.+.=.+|-+ ....|..+. +--..-|+.|++.+ ++=|++.
T Consensus 31 ~e~A~~ye~~GA~~lsvLe~~~~D-i~~~~g~~R---~~~~~~i~~i~~~v-~iPvl~k 84 (297)
T 4adt_A 31 VEQAKIAEKAGAIGVMILENIPSE-LRNTDGVAR---SVDPLKIEEIRKCI-SINVLAK 84 (297)
T ss_dssp HHHHHHHHHHTCSEEEECCCCC------CCCCCC---CCCHHHHHHHHTTC-CSEEEEE
T ss_pred HHHHHHHHHcCCCEEEEecCCCCc-chhcCCccc---CCCHHHHHHHHHhc-CCCEEEe
Confidence 466777788899998876333311 112221112 23456788888876 5656554
No 381
>4djd_D C/Fe-SP, corrinoid/iron-sulfur protein small subunit; TIM barrel, rossmann fold, B12-dependent methyltransferase; HET: B12; 2.38A {Moorella thermoacetica} PDB: 4dje_D* 4djf_D*
Probab=33.53 E-value=55 Score=32.39 Aligned_cols=79 Identities=11% Similarity=0.171 Sum_probs=54.7
Q ss_pred ccccccEEecccCCCcccCCC------chHHHHHHHHhhCCCCeEEE---EechHHHHHHHHHHCC-----CCc---hhh
Q 013861 339 ESEGADILLFSVLGSQVKPGL------PYLDVIRLLRDKYPLPIAAY---QVSGEYSMIKAGGALK-----MID---EQR 401 (435)
Q Consensus 339 ~~EGADilM~~~~~~~VKPal------~YLDIIr~vk~~~~lPvaaY---qVSGEYaMikaAa~~G-----~id---e~~ 401 (435)
.++|||||= +-|.--.|+. -.+.+|+.+++.+++|+..- +.|=.-..+++|.+.| +|+ .++
T Consensus 91 ~~~GAdiID--Ig~eStrP~~~~vs~ee~~~~V~~v~~~~~vPlsIDg~~~~T~~~eV~eaAleagag~~~lINsv~~~~ 168 (323)
T 4djd_D 91 AEYGADLIY--LKLDGADPEGANHSVDQCVATVKEVLQAVGVPLVVVGCGDVEKDHEVLEAVAEAAAGENLLLGNAEQEN 168 (323)
T ss_dssp HTTCCSEEE--EECGGGCTTTTCCCHHHHHHHHHHHHHHCCSCEEEECCSCHHHHHHHHHHHHHHTTTSCCEEEEEBTTB
T ss_pred HHcCCCEEE--EcCccCCCCCCCCCHHHHHHHHHHHHhhCCceEEEECCCCCCCCHHHHHHHHHhcCCCCCeEEECCccc
Confidence 389999998 2223345663 37888999999999999776 4456667888888876 222 222
Q ss_pred HHHHHHHHHHHhcccEeeh
Q 013861 402 VMMESLMCLRRAGADIILT 420 (435)
Q Consensus 402 ~v~Esl~~ikRAGAd~IiT 420 (435)
.-+.+...++.|+-+|+.
T Consensus 169 -~~~m~~laa~~g~~vVlm 186 (323)
T 4djd_D 169 -YKSLTAACMVHKHNIIAR 186 (323)
T ss_dssp -CHHHHHHHHHHTCEEEEE
T ss_pred -HHHHHHHHHHhCCeEEEE
Confidence 134455667889999985
No 382
>1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1
Probab=33.25 E-value=82 Score=29.92 Aligned_cols=46 Identities=15% Similarity=0.146 Sum_probs=35.0
Q ss_pred hHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEeeh
Q 013861 361 YLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILT 420 (435)
Q Consensus 361 YLDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G~ide~~~v~Esl~~ikRAGAd~IiT 420 (435)
-++||+.+++..++||.. -++. ||-+++.. |....+..+|+|.|+-
T Consensus 114 ~~eiv~~v~~~~~~pv~v-Kir~-----------G~~~~~~~--~~a~~l~~~G~d~i~v 159 (318)
T 1vhn_A 114 FRYIVRELRKSVSGKFSV-KTRL-----------GWEKNEVE--EIYRILVEEGVDEVFI 159 (318)
T ss_dssp HHHHHHHHHHHCSSEEEE-EEES-----------CSSSCCHH--HHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHhhCCCEEE-EecC-----------CCChHHHH--HHHHHHHHhCCCEEEE
Confidence 478999999999999754 3443 78665433 8888999999998853
No 383
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=32.98 E-value=64 Score=28.71 Aligned_cols=77 Identities=19% Similarity=0.226 Sum_probs=54.0
Q ss_pred CCHHHHHHHHHhcccccccEEecccCCCccc---CCCchHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCch---
Q 013861 326 ANYREALVEAQADESEGADILLFSVLGSQVK---PGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDE--- 399 (435)
Q Consensus 326 ~N~~EAlre~~~D~~EGADilM~~~~~~~VK---Pal~YLDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G~ide--- 399 (435)
.|..||+..... ...|+|+ +- |.+.=+++++.+++...+||..+--..+-..+..|.+.|..|.
T Consensus 68 ~~~~~al~~~~~---~~~Dlvl-------lD~~lp~~~G~~l~~~lr~~~~~~iI~lt~~~~~~~~~~a~~~Ga~~yl~K 137 (249)
T 3q9s_A 68 DSAMNGLIKARE---DHPDLIL-------LDLGLPDFDGGDVVQRLRKNSALPIIVLTARDTVEEKVRLLGLGADDYLIK 137 (249)
T ss_dssp SSHHHHHHHHHH---SCCSEEE-------EECCSCHHHHHHHHHHHHTTCCCCEEEEESCCSHHHHHHHHHHTCSEEEES
T ss_pred CCHHHHHHHHhc---CCCCEEE-------EcCCCCCCCHHHHHHHHHcCCCCCEEEEECCCCHHHHHHHHHCCCcEEEEC
Confidence 367787776653 3589998 54 4455588999999877899999888777777777777776542
Q ss_pred ---hhHHHHHHHHHHH
Q 013861 400 ---QRVMMESLMCLRR 412 (435)
Q Consensus 400 ---~~~v~Esl~~ikR 412 (435)
.+.+.+.+..+.+
T Consensus 138 p~~~~~L~~~i~~~l~ 153 (249)
T 3q9s_A 138 PFHPDELLARVKVQLR 153 (249)
T ss_dssp SCCHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHh
Confidence 2445555555544
No 384
>3bre_A Probable two-component response regulator; protein-nucleotide complex, signaling protein; HET: C2E; 2.40A {Pseudomonas aeruginosa} PDB: 3i5a_A*
Probab=32.88 E-value=1.1e+02 Score=28.20 Aligned_cols=68 Identities=21% Similarity=0.227 Sum_probs=50.3
Q ss_pred CCCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhh---CCCCeEEEEechHHHHHHHHHHCCCCch
Q 013861 325 PANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDK---YPLPIAAYQVSGEYSMIKAGGALKMIDE 399 (435)
Q Consensus 325 p~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~---~~lPvaaYqVSGEYaMikaAa~~G~ide 399 (435)
..|..||+..+.. +.-|+|+... .=|++.=+++++.+|+. ..+||...--.++......|.+.|..|.
T Consensus 49 ~~~~~~al~~~~~---~~~dlvl~D~----~mp~~~G~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~a~~~Ga~~~ 119 (358)
T 3bre_A 49 CSDPQQAVAVANQ---IKPTVILQDL----VMPGVDGLTLLAAYRGNPATRDIPIIVLSTKEEPTVKSAAFAAGANDY 119 (358)
T ss_dssp ECCHHHHHHHHHH---HCCSEEEEES----BCSSSBHHHHHHHHTTSTTTTTSCEEEEESSCCHHHHHHHHHTTCSEE
T ss_pred eCCHHHHHHHHHh---CCCCEEEEeC----CCCCCCHHHHHHHHhcCcccCCCcEEEEeCCCCHHHHHHHHhcChheE
Confidence 4688888876653 4579888111 13788889999999975 2589998877777888888888887653
No 385
>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1
Probab=32.75 E-value=46 Score=30.71 Aligned_cols=50 Identities=28% Similarity=0.484 Sum_probs=35.8
Q ss_pred cCCCCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEE
Q 013861 144 IGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVI 215 (435)
Q Consensus 144 I~sMPGv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~I 215 (435)
+..+||+ . -.+++.++.+.|...|.+||. . ..| | ...++.++..+|++-+
T Consensus 111 ~~~i~Gv-----~--t~~e~~~A~~~Gad~vk~Fpa-~-----~~g-------G--~~~lk~l~~~~~~ipv 160 (224)
T 1vhc_A 111 FPITPGV-----N--NPMAIEIALEMGISAVKFFPA-E-----ASG-------G--VKMIKALLGPYAQLQI 160 (224)
T ss_dssp CCEECEE-----C--SHHHHHHHHHTTCCEEEETTT-T-----TTT-------H--HHHHHHHHTTTTTCEE
T ss_pred CCEEecc-----C--CHHHHHHHHHCCCCEEEEeeC-c-----ccc-------C--HHHHHHHHhhCCCCeE
Confidence 5668884 1 266788899999999999981 0 010 1 5688999999987655
No 386
>3aj7_A Oligo-1,6-glucosidase; (beta/alpha)8-barrel, hydrolase; 1.30A {Saccharomyces cerevisiae} PDB: 3a4a_A* 3a47_A 3axi_A* 3axh_A*
Probab=32.69 E-value=67 Score=33.26 Aligned_cols=61 Identities=15% Similarity=0.281 Sum_probs=41.8
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCC------------HHHHHHHHHHHCCCeEEEeeecccCC
Q 013861 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGL------------VPRTIWLLKDRYPDLVIYTDVALDPY 224 (435)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~------------v~raIr~iK~~~Pdl~IitDVcLc~Y 224 (435)
++.+.+.-+.++||++|-|-|+.+. +..+..|+.-+. +.+-|+.++++ .|-||.|+-+-+-
T Consensus 41 gi~~~Ldyl~~LGv~~i~l~Pi~~~----~~~~~GY~~~dy~~id~~~Gt~~df~~lv~~~h~~--Gi~VilD~V~NH~ 113 (589)
T 3aj7_A 41 GIASKLEYIKELGADAIWISPFYDS----PQDDMGYDIANYEKVWPTYGTNEDCFALIEKTHKL--GMKFITDLVINHC 113 (589)
T ss_dssp HHHHTHHHHHHHTCSEEEECCCEEC----CCTTTTSSCSEEEEECTTTCCHHHHHHHHHHHHHT--TCEEEEEECCSBC
T ss_pred HHHHHHHHHHHcCCCEEEECCcccC----CCCCCCcCcccccccccccCCHHHHHHHHHHHHHC--CCEEEEEeccccc
Confidence 6888899999999999999886332 222344544333 34555555554 7999999987654
No 387
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}
Probab=32.62 E-value=1.4e+02 Score=27.39 Aligned_cols=36 Identities=19% Similarity=0.331 Sum_probs=26.1
Q ss_pred HHHHHhcc-cccccEEecccCCCcccCCCchHHHHHHHHhhCCCCeEE
Q 013861 332 LVEAQADE-SEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAA 378 (435)
Q Consensus 332 lre~~~D~-~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~~lPvaa 378 (435)
+.+..... +-||..|- + ..++-|+++|+.+++||.+
T Consensus 38 ~~~~A~a~~~~Ga~~i~-------~----~~~~~i~~ir~~v~~Pvig 74 (229)
T 3q58_A 38 VAAMAQAAASAGAVAVR-------I----EGIENLRTVRPHLSVPIIG 74 (229)
T ss_dssp HHHHHHHHHHTTCSEEE-------E----ESHHHHHHHGGGCCSCEEE
T ss_pred HHHHHHHHHHCCCcEEE-------E----CCHHHHHHHHHhcCCCEEE
Confidence 33444443 46899888 4 2478899999999999864
No 388
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=32.56 E-value=1.9e+02 Score=27.41 Aligned_cols=109 Identities=14% Similarity=0.171 Sum_probs=61.9
Q ss_pred echhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHC-CCeEEEeeecccCCCCCCcce
Q 013861 153 LGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRY-PDLVIYTDVALDPYSSDGHDG 231 (435)
Q Consensus 153 ~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~-Pdl~IitDVcLc~YTshGHcG 231 (435)
+.++ .+.+.++.+++.|+..+++.|. +|+...=...=-.+.++...+.. ..+-||+=+
T Consensus 30 iD~~-~l~~lv~~li~~Gv~gl~v~Gt--------TGE~~~Ls~eEr~~v~~~~~~~~~grvpViaGv------------ 88 (301)
T 1xky_A 30 IDFA-KTTKLVNYLIDNGTTAIVVGGT--------TGESPTLTSEEKVALYRHVVSVVDKRVPVIAGT------------ 88 (301)
T ss_dssp BCHH-HHHHHHHHHHHTTCCEEEESST--------TTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEEC------------
T ss_pred cCHH-HHHHHHHHHHHcCCCEEEECcc--------ccChhhCCHHHHHHHHHHHHHHhCCCceEEeCC------------
Confidence 4443 5888999999999999999996 23333211111234444444433 234444322
Q ss_pred eecCCCccccHHHHHHHHHHHHHHHHcCCCee---cCCC---CCCchHHHHHHHHHHCCCCCceeechh
Q 013861 232 IVREDGVIMNDETVHQLCKQAVSQARAGADVV---SPSD---MMDGRVGAIRAALDAEGFQHVSIMSYT 294 (435)
Q Consensus 232 Iv~e~g~IdND~Tv~~Lak~Avs~A~AGADiV---APSD---MMDGrVgAIR~aLD~~Gf~~v~IMSYS 294 (435)
|...-++|++ .+-..+++|||.| .|.= --+|-+...|+..++. +++||=|-
T Consensus 89 -----g~~~t~~ai~----la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~---~lPiilYn 145 (301)
T 1xky_A 89 -----GSNNTHASID----LTKKATEVGVDAVMLVAPYYNKPSQEGMYQHFKAIAEST---PLPVMLYN 145 (301)
T ss_dssp -----CCSCHHHHHH----HHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHTC---SSCEEEEE
T ss_pred -----CCCCHHHHHH----HHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhc---CCCEEEEe
Confidence 2122244443 3333467899965 4431 1267777777776644 67898885
No 389
>3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni}
Probab=32.49 E-value=92 Score=29.66 Aligned_cols=166 Identities=10% Similarity=0.106 Sum_probs=95.7
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHH--HHHHHHHHCC--C-eEEEeeecccCCCCCCccee
Q 013861 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPR--TIWLLKDRYP--D-LVIYTDVALDPYSSDGHDGI 232 (435)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~r--aIr~iK~~~P--d-l~IitDVcLc~YTshGHcGI 232 (435)
..++.++.+.+.|..-+=| | || ..|+. .||++.| ..|+|+.-+- + +-++..+. .+---.+
T Consensus 29 ~t~~~~~~l~~~GaD~iEl-G-iP--fSDP~------aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r-----~~~Pivl 93 (252)
T 3tha_A 29 TSEAFLQRLDQSPIDILEL-G-VA--YSDPI------ADGEIIADAAKIALDQGVDIHSVFELLARIK-----TKKALVF 93 (252)
T ss_dssp HHHHHHHTGGGSSCSEEEE-E-CC--CSCCC------SCCCHHHHHHHHHHHTTCCHHHHHHHHHHCC-----CSSEEEE
T ss_pred HHHHHHHHHHHcCCCEEEE-C-CC--CCCCC------CCcHHHHHHHHHHHHCCCCHHHHHHHHHHHh-----cCCCEEE
Confidence 4778888899999988877 7 46 35554 3688775 3334433210 0 00000000 0000011
Q ss_pred ecCCCccccH--HHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCCCceeechhhhhcccccccchhhhc
Q 013861 233 VREDGVIMND--ETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALD 310 (435)
Q Consensus 233 v~e~g~IdND--~Tv~~Lak~Avs~A~AGADiVAPSDMMDGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRdA~~ 310 (435)
+ ++.+-- --++..++ ..+++|+|-+---|+=--.....+++++++|..-+.++
T Consensus 94 m---~Y~N~i~~~G~e~F~~---~~~~aGvdG~IipDLP~eE~~~~~~~~~~~Gl~~I~lv------------------- 148 (252)
T 3tha_A 94 M---VYYNLIFSYGLEKFVK---KAKSLGICALIVPELSFEESDDLIKECERYNIALITLV------------------- 148 (252)
T ss_dssp E---CCHHHHHHHCHHHHHH---HHHHTTEEEEECTTCCGGGCHHHHHHHHHTTCEECEEE-------------------
T ss_pred E---eccCHHHHhhHHHHHH---HHHHcCCCEEEeCCCCHHHHHHHHHHHHHcCCeEEEEe-------------------
Confidence 1 222111 11344444 45799999998888887788999999999999777766
Q ss_pred CCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEecccC---CCcccCCCchHHHHHHHHhhCCCCeEE
Q 013861 311 SNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVL---GSQVKPGLPYLDVIRLLRDKYPLPIAA 378 (435)
Q Consensus 311 Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~---~~~VKPal~YLDIIr~vk~~~~lPvaa 378 (435)
.|....|=++++... ..|- +-+.|.. |.+-.-...-.+.++++|+.+++||++
T Consensus 149 -------------aP~t~~eRi~~ia~~-a~gF-iY~Vs~~GvTG~~~~~~~~~~~~v~~vr~~~~~Pv~v 204 (252)
T 3tha_A 149 -------------SVTTPKERVKKLVKH-AKGF-IYLLASIGITGTKSVEEAILQDKVKEIRSFTNLPIFV 204 (252)
T ss_dssp -------------ETTSCHHHHHHHHTT-CCSC-EEEECCSCSSSCSHHHHHHHHHHHHHHHTTCCSCEEE
T ss_pred -------------CCCCcHHHHHHHHHh-CCCe-EEEEecCCCCCcccCCCHHHHHHHHHHHHhcCCcEEE
Confidence 232334556655543 4444 3344433 443211112467899999999999986
No 390
>3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C*
Probab=32.44 E-value=88 Score=30.43 Aligned_cols=38 Identities=13% Similarity=0.260 Sum_probs=25.0
Q ss_pred cccccEEecccC----C---Cc--ccCCCchHHHHHHHHhhC-CCCeEE
Q 013861 340 SEGADILLFSVL----G---SQ--VKPGLPYLDVIRLLRDKY-PLPIAA 378 (435)
Q Consensus 340 ~EGADilM~~~~----~---~~--VKPal~YLDIIr~vk~~~-~lPvaa 378 (435)
+.|+|.|..+.- | .+ -.| ...+|.|+++|+.+ ++||.+
T Consensus 155 ~aG~d~I~V~~r~~~~g~~g~~~~~~~-~~~~~~i~~ik~~~~~iPVia 202 (350)
T 3b0p_A 155 EAGVKVFVVHARSALLALSTKANREIP-PLRHDWVHRLKGDFPQLTFVT 202 (350)
T ss_dssp HTTCCEEEEECSCBC----------CC-CCCHHHHHHHHHHCTTSEEEE
T ss_pred HcCCCEEEEecCchhcccCcccccCCC-cccHHHHHHHHHhCCCCeEEE
Confidence 579999994421 0 00 011 12589999999999 899875
No 391
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=32.37 E-value=97 Score=31.40 Aligned_cols=47 Identities=19% Similarity=0.299 Sum_probs=34.3
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEe
Q 013861 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYT 217 (435)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~Iit 217 (435)
...+.++.+++.|+..|.|-.. .|. + ......|+.||+.+|++.|+.
T Consensus 255 ~~~~~a~~~~~aG~d~v~i~~~--------~G~----~-~~~~~~i~~i~~~~~~~pvi~ 301 (514)
T 1jcn_A 255 DDKYRLDLLTQAGVDVIVLDSS--------QGN----S-VYQIAMVHYIKQKYPHLQVIG 301 (514)
T ss_dssp THHHHHHHHHHTTCSEEEECCS--------CCC----S-HHHHHHHHHHHHHCTTCEEEE
T ss_pred hhHHHHHHHHHcCCCEEEeecc--------CCc----c-hhHHHHHHHHHHhCCCCceEe
Confidence 4688899999999998877221 121 1 134578999999999988875
No 392
>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A*
Probab=32.24 E-value=1.5e+02 Score=27.28 Aligned_cols=39 Identities=23% Similarity=0.374 Sum_probs=26.6
Q ss_pred HHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCC-chhhHHHHHHHHHHHhcccEeeh
Q 013861 362 LDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMI-DEQRVMMESLMCLRRAGADIILT 420 (435)
Q Consensus 362 LDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G~i-de~~~v~Esl~~ikRAGAd~IiT 420 (435)
++.++++++.+++||.+ .|-| +.+ -+.|. ..+|||.|.-
T Consensus 230 ~~~i~~i~~~~~ipvia---------------~GGI~~~~-d~~~~----l~~GAd~V~v 269 (311)
T 1ep3_A 230 LKLIHQVAQDVDIPIIG---------------MGGVANAQ-DVLEM----YMAGASAVAV 269 (311)
T ss_dssp HHHHHHHHTTCSSCEEE---------------CSSCCSHH-HHHHH----HHHTCSEEEE
T ss_pred HHHHHHHHHhcCCCEEE---------------ECCcCCHH-HHHHH----HHcCCCEEEE
Confidence 69999999999999875 3444 333 22333 3479998853
No 393
>3no5_A Uncharacterized protein; PFAM DUF849 domain containing protein, structural genomics, center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha}
Probab=32.23 E-value=41 Score=32.42 Aligned_cols=56 Identities=13% Similarity=0.128 Sum_probs=44.2
Q ss_pred echhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEE
Q 013861 153 LGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIY 216 (435)
Q Consensus 153 ~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~Ii 216 (435)
++.+ ++.++..++.+.|-.-|=|.. +|+.|...+++ ....+++..||++.||++|-
T Consensus 27 vTpe-Eia~~A~~~~~AGAaivHlHv------Rd~~G~~s~d~-~~~~e~~~~IR~~~pd~ii~ 82 (275)
T 3no5_A 27 ITVS-EQVESTQAAFEAGATLVHLHV------RNDDETPTSNP-DRFALVLEGIRKHAPGMITQ 82 (275)
T ss_dssp CSHH-HHHHHHHHHHHHTCCEEEECE------ECTTSCEECCH-HHHHHHHHHHHHHSTTCEEE
T ss_pred CCHH-HHHHHHHHHHHccCcEEEEee------cCCCCCcCCCH-HHHHHHHHHHHHhCCCeEEE
Confidence 4554 599999999999998887865 34457766655 56788999999999998874
No 394
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=31.89 E-value=2.9e+02 Score=25.94 Aligned_cols=110 Identities=18% Similarity=0.263 Sum_probs=63.8
Q ss_pred eechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCC-CeEEEeeecccCCCCCCcc
Q 013861 152 RLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYP-DLVIYTDVALDPYSSDGHD 230 (435)
Q Consensus 152 r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~P-dl~IitDVcLc~YTshGHc 230 (435)
++.++ .+.+.++.+++.|+..+++.|. +|+...=..-=-.+.++...+... .+-||+=+
T Consensus 17 ~iD~~-~l~~lv~~li~~Gv~gl~~~Gt--------tGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGv----------- 76 (289)
T 2yxg_A 17 EVDFD-GLEENINFLIENGVSGIVAVGT--------TGESPTLSHEEHKKVIEKVVDVVNGRVQVIAGA----------- 76 (289)
T ss_dssp EECHH-HHHHHHHHHHHTTCSEEEESST--------TTTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEC-----------
T ss_pred CcCHH-HHHHHHHHHHHCCCCEEEECcc--------ccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeC-----------
Confidence 44554 5889999999999999999996 233332111122344555544432 34454322
Q ss_pred eeecCCCccccHHHHHHHHHHHHHHHHcCCCee---cCCC---CCCchHHHHHHHHHHCCCCCceeechh
Q 013861 231 GIVREDGVIMNDETVHQLCKQAVSQARAGADVV---SPSD---MMDGRVGAIRAALDAEGFQHVSIMSYT 294 (435)
Q Consensus 231 GIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiV---APSD---MMDGrVgAIR~aLD~~Gf~~v~IMSYS 294 (435)
|...-.+|++ .+-..+++|||.| .|.= --+|-+...|+..++. +++||=|-
T Consensus 77 ------g~~~t~~ai~----la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~---~lPiilYn 133 (289)
T 2yxg_A 77 ------GSNCTEEAIE----LSVFAEDVGADAVLSITPYYNKPTQEGLRKHFGKVAESI---NLPIVLYN 133 (289)
T ss_dssp ------CCSSHHHHHH----HHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHC---SSCEEEEE
T ss_pred ------CCCCHHHHHH----HHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhc---CCCEEEEe
Confidence 2122244443 3333467899964 4432 1267777778777765 57898885
No 395
>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=31.88 E-value=35 Score=32.40 Aligned_cols=90 Identities=17% Similarity=0.176 Sum_probs=49.9
Q ss_pred HHHHHHHHHcCCCeEEEeecCCCC-CCCcccCcCcCCCC---CHHHHHHHHHHHCCCeEEEeeec---ccCCCCCCccee
Q 013861 160 VQEVAKARDVGVNSVVLFPKVPDA-LKSPTGDEAYNDNG---LVPRTIWLLKDRYPDLVIYTDVA---LDPYSSDGHDGI 232 (435)
Q Consensus 160 ~~~v~~~~~~GI~sv~LFgvi~~~-~Kd~~Gs~A~~~~g---~v~raIr~iK~~~Pdl~IitDVc---Lc~YTshGHcGI 232 (435)
.+.++.+++.|++.|.+|....+. .+...+ ...+. .+.++++..|+.. +-|-+.++ -|||.
T Consensus 86 ~~~i~~a~~aG~~~v~i~~~~s~~~~~~~~~---~s~ee~l~~~~~~v~~a~~~G--~~V~~~l~~~~~~e~~------- 153 (302)
T 2ftp_A 86 LKGFEAALESGVKEVAVFAAASEAFSQRNIN---CSIKDSLERFVPVLEAARQHQ--VRVRGYISCVLGCPYD------- 153 (302)
T ss_dssp HHHHHHHHHTTCCEEEEEEESCHHHHHHHHS---SCHHHHHHHHHHHHHHHHHTT--CEEEEEEECTTCBTTT-------
T ss_pred HHHHHHHHhCCcCEEEEEEecCHHHHHHHhC---CCHHHHHHHHHHHHHHHHHCC--CeEEEEEEEEeeCCcC-------
Confidence 367888999999999998653221 000000 01111 2345566666653 44444443 24541
Q ss_pred ecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCC
Q 013861 233 VREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMM 269 (435)
Q Consensus 233 v~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMM 269 (435)
+..+ .+.+.+.+-...++|||.|+-.|+.
T Consensus 154 ----~~~~----~~~~~~~~~~~~~~G~d~i~l~DT~ 182 (302)
T 2ftp_A 154 ----GDVD----PRQVAWVARELQQMGCYEVSLGDTI 182 (302)
T ss_dssp ----BCCC----HHHHHHHHHHHHHTTCSEEEEEESS
T ss_pred ----CCCC----HHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 2222 3345555555668899999999875
No 396
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=31.82 E-value=1e+02 Score=26.09 Aligned_cols=79 Identities=15% Similarity=0.209 Sum_probs=54.7
Q ss_pred CHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhC-CCCeEEEEechHHHHHHHHHHCCCCch------
Q 013861 327 NYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMIDE------ 399 (435)
Q Consensus 327 N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~-~lPvaaYqVSGEYaMikaAa~~G~ide------ 399 (435)
|..||+..... ...|+++... --|.+.=+++++.+++.. .+|+...--..+...+..|.+.|..|.
T Consensus 34 ~~~~a~~~~~~---~~~dlvllD~----~l~~~~g~~~~~~lr~~~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~Kp~~ 106 (225)
T 1kgs_A 34 DGEEGMYMALN---EPFDVVILDI----MLPVHDGWEILKSMRESGVNTPVLMLTALSDVEYRVKGLNMGADDYLPKPFD 106 (225)
T ss_dssp SHHHHHHHHHH---SCCSEEEEES----CCSSSCHHHHHHHHHHTTCCCCEEEEESSCHHHHHHHTCCCCCSEEEESSCC
T ss_pred CHHHHHHHHhc---CCCCEEEEeC----CCCCCCHHHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHhCCccEEEeCCCC
Confidence 66777766543 4589988221 126677799999999875 699999888888888888888887542
Q ss_pred hhHHHHHHHHHHH
Q 013861 400 QRVMMESLMCLRR 412 (435)
Q Consensus 400 ~~~v~Esl~~ikR 412 (435)
.+.+.+.+..+.+
T Consensus 107 ~~~l~~~i~~~~~ 119 (225)
T 1kgs_A 107 LRELIARVRALIR 119 (225)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 2344555555443
No 397
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=31.57 E-value=1.3e+02 Score=26.00 Aligned_cols=67 Identities=13% Similarity=0.070 Sum_probs=48.3
Q ss_pred CCCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhC-CCCeEEEEechHHHHHHHHHHCCCCc
Q 013861 325 PANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMID 398 (435)
Q Consensus 325 p~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~-~lPvaaYqVSGEYaMikaAa~~G~id 398 (435)
..|..||+..... ...|+|+... --|++.=+++++.+++.. .+||..+--..+-.....+.+.|..|
T Consensus 33 ~~~~~~al~~l~~---~~~dlvllD~----~lp~~~g~~~~~~lr~~~~~~~ii~lt~~~~~~~~~~~~~~Ga~~ 100 (225)
T 3c3w_A 33 AGSVAEAMARVPA---ARPDVAVLDV----RLPDGNGIELCRDLLSRMPDLRCLILTSYTSDEAMLDAILAGASG 100 (225)
T ss_dssp ESSHHHHHHHHHH---HCCSEEEECS----EETTEEHHHHHHHHHHHCTTCEEEEGGGSSSHHHHHHHHHHTCCC
T ss_pred ECCHHHHHHHHhh---cCCCEEEEeC----CCCCCCHHHHHHHHHHhCCCCcEEEEECCCCHHHHHHHHHCCCCE
Confidence 4577888876654 4579988111 127777899999999876 59998877666667777777777755
No 398
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=31.56 E-value=2.7e+02 Score=26.17 Aligned_cols=110 Identities=16% Similarity=0.217 Sum_probs=63.3
Q ss_pred eechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCC-CeEEEeeecccCCCCCCcc
Q 013861 152 RLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYP-DLVIYTDVALDPYSSDGHD 230 (435)
Q Consensus 152 r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~P-dl~IitDVcLc~YTshGHc 230 (435)
++.++ .+.+.++.+++.|+..+++.|. +|+...=..-=-.+.++...+... .+-||+=+
T Consensus 17 ~iD~~-~l~~lv~~li~~Gv~gl~~~Gt--------tGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGv----------- 76 (294)
T 2ehh_A 17 EVDYE-ALGNLIEFHVDNGTDAILVCGT--------TGESPTLTFEEHEKVIEFAVKRAAGRIKVIAGT----------- 76 (294)
T ss_dssp EECHH-HHHHHHHHHHTTTCCEEEESST--------TTTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEC-----------
T ss_pred CcCHH-HHHHHHHHHHHCCCCEEEECcc--------ccChhhCCHHHHHHHHHHHHHHhCCCCcEEEec-----------
Confidence 34454 5889999999999999999996 233322111112344444444432 34444322
Q ss_pred eeecCCCccccHHHHHHHHHHHHHHHHcCCCee---cCCC---CCCchHHHHHHHHHHCCCCCceeechh
Q 013861 231 GIVREDGVIMNDETVHQLCKQAVSQARAGADVV---SPSD---MMDGRVGAIRAALDAEGFQHVSIMSYT 294 (435)
Q Consensus 231 GIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiV---APSD---MMDGrVgAIR~aLD~~Gf~~v~IMSYS 294 (435)
|...-.+|++ .+-..+++|||.| .|.= --+|-+...++..++. +++||=|-
T Consensus 77 ------g~~~t~~ai~----la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~---~lPiilYn 133 (294)
T 2ehh_A 77 ------GGNATHEAVH----LTAHAKEVGADGALVVVPYYNKPTQRGLYEHFKTVAQEV---DIPIIIYN 133 (294)
T ss_dssp ------CCSCHHHHHH----HHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHC---CSCEEEEE
T ss_pred ------CCCCHHHHHH----HHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhc---CCCEEEEe
Confidence 2122344443 3333467899965 4431 1267777788777765 57888885
No 399
>1m53_A Isomaltulose synthase; klebsiella SP. LX3, sucrose isomerization, isomerase; 2.20A {Klebsiella SP} SCOP: b.71.1.1 c.1.8.1
Probab=31.52 E-value=72 Score=32.68 Aligned_cols=61 Identities=16% Similarity=0.440 Sum_probs=41.3
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCC------------HHHHHHHHHHHCCCeEEEeeecccCC
Q 013861 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGL------------VPRTIWLLKDRYPDLVIYTDVALDPY 224 (435)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~------------v~raIr~iK~~~Pdl~IitDVcLc~Y 224 (435)
++.+.+.-+.++||++|-|-|+.+. +..+..|+.-+. +.+-|+.++++ .|-||-|+-+-+-
T Consensus 46 gi~~~LdyL~~LGv~~I~l~Pi~~~----~~~~~GYd~~dy~~idp~~Gt~~df~~lv~~aH~~--Gi~VilD~V~NH~ 118 (570)
T 1m53_A 46 GIIEKLDYLKSLGIDAIWINPHYDS----PNTDNGYDISNYRQIMKEYGTMEDFDSLVAEMKKR--NMRLMIDVVINHT 118 (570)
T ss_dssp HHHHTHHHHHHHTCCEEEECCCEEC----CCTTTTSSCSEEEEECGGGCCHHHHHHHHHHHHHT--TCEEEEEECCSBC
T ss_pred HHHHHHHHHHHcCCCEEEECCcccC----CCCCCCCCcccccccCcccCCHHHHHHHHHHHHHC--CCEEEEEEecccc
Confidence 6888899999999999999886432 222344544332 23445555554 7999999988653
No 400
>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*
Probab=31.31 E-value=1.7e+02 Score=29.86 Aligned_cols=46 Identities=17% Similarity=0.273 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCC-eEEE
Q 013861 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPD-LVIY 216 (435)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pd-l~Ii 216 (435)
...+.++.+++.|++.+.+... . | +..+ +...|+.||+.+|+ +.|+
T Consensus 242 ~~~e~~~~l~e~gv~~l~Vd~~--~------g----~~~~-~~~~i~~lk~~~~~~~~Vi 288 (503)
T 1me8_A 242 DFRERVPALVEAGADVLCIDSS--D------G----FSEW-QKITIGWIREKYGDKVKVG 288 (503)
T ss_dssp SHHHHHHHHHHHTCSEEEECCS--C------C----CSHH-HHHHHHHHHHHHGGGSCEE
T ss_pred hHHHHHHHHHhhhccceEEecc--c------C----cccc-hhhHHHHHHHhCCCCceEe
Confidence 4677788888889986555321 1 1 1122 56678999999887 6554
No 401
>2zic_A Dextran glucosidase; TIM barrel, (beta/alpha)8-barrel, hydrolase; 2.20A {Streptococcus mutans} PDB: 2zid_A*
Probab=31.29 E-value=67 Score=32.69 Aligned_cols=99 Identities=18% Similarity=0.201 Sum_probs=62.4
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCC---------CH---HHHHHHHHHHCCCeEEEeeecccCCC
Q 013861 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNG---------LV---PRTIWLLKDRYPDLVIYTDVALDPYS 225 (435)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g---------~v---~raIr~iK~~~Pdl~IitDVcLc~YT 225 (435)
++.+.+..+.++||++|-|=|+.+. +..+..|+.-. -. .+-|+.++++ .|-||-|+-+-+-
T Consensus 32 gi~~~Ldyl~~LGv~~I~l~Pi~~~----~~~~~GY~~~dy~~idp~~Gt~~df~~lv~~~h~~--Gi~VilD~V~NH~- 104 (543)
T 2zic_A 32 GITSKLDYLQKLGVMAIWLSPVYDS----PMDDNGYDIANYEAIADIFGNMADMDNLLTQAKMR--GIKIIMDLVVNHT- 104 (543)
T ss_dssp HHHHTHHHHHHHTCSEEEECCCEEC----CCTTTTSSCSEEEEECGGGCCHHHHHHHHHHHHTT--TCEEEEEECCSBC-
T ss_pred HHHHHHHHHHHcCCCEEEECCcccC----CCCCCCCCcccccccCcccCCHHHHHHHHHHHHHC--CCEEEEEEecCcc-
Confidence 6888899999999999999886432 22223444332 23 3344444443 7999999988653
Q ss_pred CCCcc----------------eeecCC-----------------------------C----ccccHHHHHHHHHHHHHHH
Q 013861 226 SDGHD----------------GIVRED-----------------------------G----VIMNDETVHQLCKQAVSQA 256 (435)
Q Consensus 226 shGHc----------------GIv~e~-----------------------------g----~IdND~Tv~~Lak~Avs~A 256 (435)
+..|- -+.+++ + .-.|.+..+.+.+.+.-..
T Consensus 105 s~~~~~f~~~~~~~~~~y~d~y~~~~~p~~~~~~f~~~~w~~~~~~~~~y~~~f~~~~pdLN~~np~Vr~~i~~~~~~Wl 184 (543)
T 2zic_A 105 SDEHAWFIEAREHPDSSERDYYIWCDQPNDLESIFGGSAWQYDDKSDQYYLHFFSKKQPDLNWENANLRQKIYDMMNFWI 184 (543)
T ss_dssp CTTSHHHHHHHHCTTSGGGGGBCEESSCCSCBCTTSSBSEEEETTTTEEEECSSCTTSCBBCTTCHHHHHHHHHHHHHHH
T ss_pred cccchhhHhhhcCCCCCCcceeecCCCCCcccccCCCCCCcccCCCCcEEECcccCCCCccCcCCHHHHHHHHHHHHHHH
Confidence 33331 011100 0 1246778888888888889
Q ss_pred HcCCCee
Q 013861 257 RAGADVV 263 (435)
Q Consensus 257 ~AGADiV 263 (435)
+.|+|-+
T Consensus 185 ~~GvDGf 191 (543)
T 2zic_A 185 DKGIGGF 191 (543)
T ss_dssp TTTCCEE
T ss_pred hcCCCEE
Confidence 9999865
No 402
>2nv1_A Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-barrel, synthase; 2.08A {Bacillus subtilis} PDB: 2nv2_A* 1znn_A
Probab=31.12 E-value=88 Score=29.52 Aligned_cols=19 Identities=11% Similarity=0.272 Sum_probs=16.5
Q ss_pred chHHHHHHHHhhCCCCeEE
Q 013861 360 PYLDVIRLLRDKYPLPIAA 378 (435)
Q Consensus 360 ~YLDIIr~vk~~~~lPvaa 378 (435)
..+++|+++++.+++|+.+
T Consensus 65 ~~~~~i~~I~~~~~iPv~~ 83 (305)
T 2nv1_A 65 ADPTIVEEVMNAVSIPVMA 83 (305)
T ss_dssp CCHHHHHHHHHHCSSCEEE
T ss_pred CCHHHHHHHHHhCCCCEEe
Confidence 3689999999999999874
No 403
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=31.08 E-value=55 Score=30.02 Aligned_cols=91 Identities=14% Similarity=0.181 Sum_probs=49.7
Q ss_pred HHHHCCCCCceeechhhhhcccccccchhhhcCCCC-CCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcc-c
Q 013861 279 ALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPR-FGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQV-K 356 (435)
Q Consensus 279 aLD~~Gf~~v~IMSYSaKyASafYGPFRdA~~Sap~-fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~V-K 356 (435)
.|.+.|++++.|+.-..-|......-|++++...-. .-....|..+..+....+.++.. .++|.|+ + =
T Consensus 135 ~l~~~g~~~iaii~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~~~~l~~---~~~d~v~-------~~~ 204 (364)
T 3lop_A 135 ALVTIGVTRIGVLYQEDALGKEAITGVERTLKAHALAITAMASYPRNTANVGPAVDKLLA---ADVQAIF-------LGA 204 (364)
T ss_dssp HHHHTTCCCEEEEEETTHHHHHHHHHHHHHHHTTTCCCSEEEEECTTSCCCHHHHHHHHH---SCCSEEE-------EES
T ss_pred HHHHcCCceEEEEEeCchhhHHHHHHHHHHHHHcCCcEEEEEEecCCCccHHHHHHHHHh---CCCCEEE-------Eec
Confidence 344567777777754444555556667777655321 11233454444556666666543 6899998 3 1
Q ss_pred CCCchHHHHHHHHhh-CCCCeEEE
Q 013861 357 PGLPYLDVIRLLRDK-YPLPIAAY 379 (435)
Q Consensus 357 Pal~YLDIIr~vk~~-~~lPvaaY 379 (435)
....-.-+++.+++. ...|+..+
T Consensus 205 ~~~~a~~~~~~~~~~g~~~~~i~~ 228 (364)
T 3lop_A 205 TAEPAAQFVRQYRARGGEAQLLGL 228 (364)
T ss_dssp CHHHHHHHHHHHHHTTCCCEEEEC
T ss_pred CcHHHHHHHHHHHHcCCCCeEEEe
Confidence 111234466666653 46776544
No 404
>2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032}
Probab=30.94 E-value=96 Score=30.30 Aligned_cols=60 Identities=25% Similarity=0.379 Sum_probs=34.2
Q ss_pred cccccEEecccC---CCcccCCCchHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhccc
Q 013861 340 SEGADILLFSVL---GSQVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGAD 416 (435)
Q Consensus 340 ~EGADilM~~~~---~~~VKPal~YLDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G~ide~~~v~Esl~~ikRAGAd 416 (435)
+.|+|+|.+..- ...+.|.....| |..+++.+++||.+ | |..+.+. ...+..+|||
T Consensus 176 ~agad~i~i~~~~~~~~~~~~~~~~~~-i~~l~~~~~~pvi~----g-----------gi~t~e~-----a~~~~~~Gad 234 (393)
T 2qr6_A 176 KAGADLLVIQGTLISAEHVNTGGEALN-LKEFIGSLDVPVIA----G-----------GVNDYTT-----ALHMMRTGAV 234 (393)
T ss_dssp HTTCSEEEEECSSCCSSCCCC-----C-HHHHHHHCSSCEEE----E-----------CCCSHHH-----HHHHHTTTCS
T ss_pred HCCCCEEEEeCCccccccCCCcccHHH-HHHHHHhcCCCEEE----C-----------CcCCHHH-----HHHHHHcCCC
Confidence 359999874311 112334344555 67888889999987 2 4455432 2344568999
Q ss_pred Eeeh
Q 013861 417 IILT 420 (435)
Q Consensus 417 ~IiT 420 (435)
.|+.
T Consensus 235 ~i~v 238 (393)
T 2qr6_A 235 GIIV 238 (393)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8764
No 405
>1tv5_A Dhodehase, dihydroorotate dehydrogenase homolog, mitochondri, dihydroorotate; alpha-beta barrel, TIM barrel, oxidoreductase; HET: A26 FMN ORO N8E; 2.40A {Plasmodium falciparum} SCOP: c.1.4.1
Probab=30.91 E-value=91 Score=31.89 Aligned_cols=42 Identities=24% Similarity=0.209 Sum_probs=30.2
Q ss_pred hHHHHHHHHhhC--CCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEeehh
Q 013861 361 YLDVIRLLRDKY--PLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTY 421 (435)
Q Consensus 361 YLDIIr~vk~~~--~lPvaaYqVSGEYaMikaAa~~G~ide~~~v~Esl~~ikRAGAd~IiTY 421 (435)
.+++|+++++.. ++||.+ .|-|..-+-+.|.| ++|||+|--|
T Consensus 359 sl~~i~~v~~~v~~~iPVIg---------------~GGI~s~~DA~e~l----~aGAd~Vqig 402 (443)
T 1tv5_A 359 STKFICEMYNYTNKQIPIIA---------------SGGIFSGLDALEKI----EAGASVCQLY 402 (443)
T ss_dssp HHHHHHHHHHHTTTCSCEEE---------------ESSCCSHHHHHHHH----HTTEEEEEES
T ss_pred HHHHHHHHHHHcCCCCcEEE---------------ECCCCCHHHHHHHH----HcCCCEEEEc
Confidence 489999999998 899986 34444444455555 4899998654
No 406
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=30.86 E-value=1.7e+02 Score=22.09 Aligned_cols=63 Identities=16% Similarity=0.130 Sum_probs=38.0
Q ss_pred CCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhh---CCCCeEEEEechHHHHHHHHHHCCC
Q 013861 326 ANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDK---YPLPIAAYQVSGEYSMIKAGGALKM 396 (435)
Q Consensus 326 ~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~---~~lPvaaYqVSGEYaMikaAa~~G~ 396 (435)
.|..||+..... +.-|+|+... . =|.+.-+++++.+|+. ..+|+...--..+-.. ..+.+.|.
T Consensus 34 ~~~~~a~~~l~~---~~~dlvi~d~---~-l~~~~g~~~~~~l~~~~~~~~~pii~~s~~~~~~~-~~~~~~g~ 99 (133)
T 3nhm_A 34 ADGASGLQQALA---HPPDVLISDV---N-MDGMDGYALCGHFRSEPTLKHIPVIFVSGYAPRTE-GPADQPVP 99 (133)
T ss_dssp SSHHHHHHHHHH---SCCSEEEECS---S-CSSSCHHHHHHHHHHSTTTTTCCEEEEESCCC------TTSCCC
T ss_pred CCHHHHHHHHhc---CCCCEEEEeC---C-CCCCCHHHHHHHHHhCCccCCCCEEEEeCCCcHhH-HHHhhcCC
Confidence 467787776654 4589998211 1 2667789999999985 2689888754333333 33444443
No 407
>1m7x_A 1,4-alpha-glucan branching enzyme; alpha/beta barrel, beta sandwich, transferase; 2.30A {Escherichia coli} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 3o7y_A* 3o7z_A*
Probab=30.75 E-value=96 Score=32.25 Aligned_cols=126 Identities=18% Similarity=0.255 Sum_probs=73.7
Q ss_pred CCceeeEEEeeCCCCcccCCCCCceeechhhhHHHHH-HHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCC-------
Q 013861 127 ANFVYPLFIHEGEEDTPIGAMPGCYRLGWRHGLVQEV-AKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGL------- 198 (435)
Q Consensus 127 ~~LI~PlFV~eg~~~~~I~sMPGv~r~s~~~~l~~~v-~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~------- 198 (435)
...||=|+|..=.. .+ . .| .+-++. ++.+.+ ..+.++|+++|-|-|+-... ..++..|++-+.
T Consensus 131 ~~~iYei~~~~f~~-~~-~--~g-~~g~~~-~i~~~ll~yl~~lGv~~i~l~Pi~~~~---~~~~~GY~~~~y~~~~~~~ 201 (617)
T 1m7x_A 131 PISIYEVHLGSWRR-HT-D--NN-FWLSYR-ELADQLVPYAKWMGFTHLELLPINEHP---FDGSWGYQPTGLYAPTRRF 201 (617)
T ss_dssp CCEEEEECTTSSCB-CT-T--TC-CBCCHH-HHHHHHHHHHHHTTCSEEEESCCEECS---CGGGTTSSCSEEEEECGGG
T ss_pred CcEEEEEEHHHhcC-CC-C--CC-CccCHH-HHHHHHHHHHHHcCCCEEEecccccCC---CCCCCCcccccCCccCccC
Confidence 34577777643221 10 0 12 123554 577886 89999999999998863221 123444555443
Q ss_pred -----HHHHHHHHHHHCCCeEEEeeecccCCCCCCcc-----e--eec-C---CC----------ccccHHHHHHHHHHH
Q 013861 199 -----VPRTIWLLKDRYPDLVIYTDVALDPYSSDGHD-----G--IVR-E---DG----------VIMNDETVHQLCKQA 252 (435)
Q Consensus 199 -----v~raIr~iK~~~Pdl~IitDVcLc~YTshGHc-----G--Iv~-e---~g----------~IdND~Tv~~Lak~A 252 (435)
+.+.|+.++++ .|-||-|+-+.+..+++|. | ... . +| .-.|.+..+.|...+
T Consensus 202 Gt~~~~~~lv~~~H~~--Gi~VilD~V~NH~~~~~~~~~~~d~~~~y~~~~~~~g~~~~w~~~~ln~~~p~v~~~i~~~~ 279 (617)
T 1m7x_A 202 GTRDDFRYFIDAAHAA--GLNVILDWVPGHFPTDDFALAEFDGTNLYEHSDPREGYHQDWNTLIYNYGRREVSNFLVGNA 279 (617)
T ss_dssp SCHHHHHHHHHHHHHT--TCEEEEEECTTSCCCSTTSSTTGGGSCSSBCC-----------CCCBCTTSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHC--CCEEEEEEecCcccCccchhhhcCCCccccccCcccCCcCCCCCceecCCCHHHHHHHHHHH
Confidence 23445555554 7999999998877555441 1 000 0 01 124567777788888
Q ss_pred HHHHHc-CCCee
Q 013861 253 VSQARA-GADVV 263 (435)
Q Consensus 253 vs~A~A-GADiV 263 (435)
.-..+. |+|-+
T Consensus 280 ~~W~~~~gvDGf 291 (617)
T 1m7x_A 280 LYWIERFGIDAL 291 (617)
T ss_dssp HHHHHHSCCCEE
T ss_pred HHHHHHhCcCEE
Confidence 888885 88744
No 408
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=30.64 E-value=88 Score=24.58 Aligned_cols=67 Identities=15% Similarity=0.167 Sum_probs=40.0
Q ss_pred CCCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhC-CCCeEEEEechHHHHHHHHHHCCCCc
Q 013861 325 PANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMID 398 (435)
Q Consensus 325 p~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~-~lPvaaYqVSGEYaMikaAa~~G~id 398 (435)
..|..+|+..... +..|+|+... --|.+.=+|+++.+++.. .+|+...--..+-.....+.+.|..+
T Consensus 35 ~~~~~~al~~~~~---~~~dlvllD~----~lp~~~g~~l~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~ga~~ 102 (141)
T 3cu5_A 35 ADDGINAIQIALK---HPPNVLLTDV----RMPRMDGIELVDNILKLYPDCSVIFMSGYSDKEYLKAAIKFRAIR 102 (141)
T ss_dssp ESSHHHHHHHHTT---SCCSEEEEES----CCSSSCHHHHHHHHHHHCTTCEEEEECCSTTTCCC------CCCE
T ss_pred cccHHHHHHHHhc---CCCCEEEEeC----CCCCCCHHHHHHHHHhhCCCCcEEEEeCCCcHHHHHHHHhCCccE
Confidence 4577888876543 4579988111 136667789999999876 58988875555444444455555543
No 409
>3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ...
Probab=30.58 E-value=1.5e+02 Score=29.24 Aligned_cols=77 Identities=16% Similarity=0.126 Sum_probs=51.0
Q ss_pred HHHHHHHHHhcccccccEEecccCCCcccCCCchH-------HHHHHHHhh-------CCCCeEEEEechHHHHHHHHHH
Q 013861 328 YREALVEAQADESEGADILLFSVLGSQVKPGLPYL-------DVIRLLRDK-------YPLPIAAYQVSGEYSMIKAGGA 393 (435)
Q Consensus 328 ~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YL-------DIIr~vk~~-------~~lPvaaYqVSGEYaMikaAa~ 393 (435)
.-|-+.++..-++++||+|-+. +|+-..|++..| +|++.+++. .++||.+=- +
T Consensus 162 ~~~dy~~~~~~~~~~ad~ielN-isCPn~~G~~~l~~~~~l~~ll~av~~~~~~~~~~~~~Pv~vKi-~----------- 228 (367)
T 3zwt_A 162 AAEDYAEGVRVLGPLADYLVVN-VSSPNTAGLRSLQGKAELRRLLTKVLQERDGLRRVHRPAVLVKI-A----------- 228 (367)
T ss_dssp HHHHHHHHHHHHGGGCSEEEEE-CCCTTSTTGGGGGSHHHHHHHHHHHHHHHHTSCGGGCCEEEEEE-C-----------
T ss_pred CHHHHHHHHHHHhhhCCEEEEE-CCCCCCCCccccCCHHHHHHHHHHHHHHHhhccccCCceEEEEe-C-----------
Confidence 3344556666667899999844 455556676543 777777753 679997643 2
Q ss_pred CCCCchhhHHHHHHHHHHHhcccEee
Q 013861 394 LKMIDEQRVMMESLMCLRRAGADIIL 419 (435)
Q Consensus 394 ~G~ide~~~v~Esl~~ikRAGAd~Ii 419 (435)
-+| +.+ -+.|....+.++|||.|+
T Consensus 229 p~~-~~~-~~~~ia~~~~~aGadgi~ 252 (367)
T 3zwt_A 229 PDL-TSQ-DKEDIASVVKELGIDGLI 252 (367)
T ss_dssp SCC-CHH-HHHHHHHHHHHHTCCEEE
T ss_pred CCC-CHH-HHHHHHHHHHHcCCCEEE
Confidence 233 332 357788888999999887
No 410
>3no3_A Glycerophosphodiester phosphodiesterase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.89A {Parabacteroides distasonis} SCOP: c.1.18.0
Probab=30.48 E-value=58 Score=29.65 Aligned_cols=117 Identities=14% Similarity=0.116 Sum_probs=65.4
Q ss_pred hHHHHHHHHHHCCC-CCceeechhhhhcccccccchhhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEeccc
Q 013861 272 RVGAIRAALDAEGF-QHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSV 350 (435)
Q Consensus 272 rVgAIR~aLD~~Gf-~~v~IMSYSaKyASafYGPFRdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~ 350 (435)
-+..+-+.|.+.|+ .+|.|.||....-. -+|.. .|.. +..|-....+..+ ++ +-|++.+-
T Consensus 116 ~~~~v~~~l~~~~~~~~v~~~Sf~~~~l~----~~~~~---~p~~--~~~~l~~~~~~~~-~~------~~~~~~~~--- 176 (238)
T 3no3_A 116 AARLSVQMVKRMKLAKRTDYISFNMDACK----EFIRL---CPKS--EVSYLNGELSPME-LK------ELGFTGLD--- 176 (238)
T ss_dssp HHHHHHHHHHHTTCGGGEEEEESCHHHHH----HHHHH---CTTS--CEEECSSCSCHHH-HH------HTTCCEEE---
T ss_pred HHHHHHHHHHHcCCcCCEEEEECCHHHHH----HHHHH---CCCC--eEEEEeCCCCHHH-HH------HCCCceEe---
Confidence 45566677777777 45777777543221 12222 2321 2223222222222 21 23666554
Q ss_pred CCCcccCCCch--HHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEeehhcHHHHHH
Q 013861 351 LGSQVKPGLPY--LDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTYFALQAAR 428 (435)
Q Consensus 351 ~~~~VKPal~Y--LDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G~ide~~~v~Esl~~ikRAGAd~IiTYfA~~~a~ 428 (435)
....... -+.|+.+++ .+++|.+|-| |.. +.+..+.+.|+|.|||-+-..+.+
T Consensus 177 ----~~~~~~~~~~~~v~~~~~-~G~~v~~WTV----------------n~~----~~~~~l~~~GVdgIiTD~P~~~~~ 231 (238)
T 3no3_A 177 ----YHYKVLQSHPDWVKDCKV-LGMTSNVWTV----------------DDP----KLMEEMIDMGVDFITTDLPEETQK 231 (238)
T ss_dssp ----EEHHHHHHSTTHHHHHHH-TTCEEEEECC----------------CSH----HHHHHHHHHTCSEEEESCHHHHHH
T ss_pred ----ccHHhhhCCHHHHHHHHH-CCCEEEEECC----------------CCH----HHHHHHHHcCCCEEECCCHHHHHH
Confidence 2111000 135666654 6899999987 332 345566778999999999999988
Q ss_pred HHhc
Q 013861 429 CLCG 432 (435)
Q Consensus 429 ~L~~ 432 (435)
+|++
T Consensus 232 ~l~~ 235 (238)
T 3no3_A 232 ILHS 235 (238)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8864
No 411
>3ngj_A Deoxyribose-phosphate aldolase; lyase, structural genomics, structural genomics center for infectious disease, ssgcid; 1.70A {Entamoeba histolytica}
Probab=30.40 E-value=1e+02 Score=29.31 Aligned_cols=127 Identities=13% Similarity=0.153 Sum_probs=0.0
Q ss_pred ccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCCCceeechhhhhcccccccchhhhcCCCCCCCcc
Q 013861 240 MNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKK 319 (435)
Q Consensus 240 dND~Tv~~Lak~Avs~A~AGADiVAPSDMMDGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRdA~~Sap~fgDRk 319 (435)
...+.++.||+.|..+ ||.-|.|-++-.|++..++ -+|..+.+---
T Consensus 40 ~t~~~i~~lc~eA~~~----------------------------~~~aVcV~p~~v~~a~~~L------~~s~v~v~tVi 85 (239)
T 3ngj_A 40 ATEEQIRKLCSEAAEY----------------------------KFASVCVNPTWVPLCAELL------KGTGVKVCTVI 85 (239)
T ss_dssp CCHHHHHHHHHHHHHH----------------------------TCSEEEECGGGHHHHHHHH------TTSSCEEEEEE
T ss_pred CCHHHHHHHHHHHHhc----------------------------CCcEEEECHHHHHHHHHHh------CCCCCeEEEEe
Q ss_pred ccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCch---------HHHHHHHHhhCC---CCeEEEEechHHHH
Q 013861 320 TYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPY---------LDVIRLLRDKYP---LPIAAYQVSGEYSM 387 (435)
Q Consensus 320 tYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~Y---------LDIIr~vk~~~~---lPvaaYqVSGEYaM 387 (435)
.|-+-......-+.|++.=++.|||-|= +=.-... ++=|+.+++..+ |+|.
T Consensus 86 gFP~G~~~~~~Kv~Ea~~Ai~~GAdEID-------mViNig~lk~g~~~~v~~eI~~v~~a~~~~~lKVI---------- 148 (239)
T 3ngj_A 86 GFPLGATPSEVKAYETKVAVEQGAEEVD-------MVINIGMVKAKKYDDVEKDVKAVVDASGKALTKVI---------- 148 (239)
T ss_dssp STTTCCSCHHHHHHHHHHHHHTTCSEEE-------EECCHHHHHTTCHHHHHHHHHHHHHHHTTSEEEEE----------
T ss_pred ccCCCCCchHHHHHHHHHHHHcCCCEEE-------EEeehHHhccccHHHHHHHHHHHHHHhcCCceEEE----------
Q ss_pred HHHHHHCCCCchhhHHHHHHHHHHHhcccEeehh--c
Q 013861 388 IKAGGALKMIDEQRVMMESLMCLRRAGADIILTY--F 422 (435)
Q Consensus 388 ikaAa~~G~ide~~~v~Esl~~ikRAGAd~IiTY--f 422 (435)
.+.|.++.++ +...-.....||||+|=|. |
T Consensus 149 ----lEt~~Lt~ee-i~~a~~ia~~aGADfVKTSTGf 180 (239)
T 3ngj_A 149 ----IECCYLTNEE-KVEVCKRCVAAGAEYVKTSTGF 180 (239)
T ss_dssp ----CCGGGSCHHH-HHHHHHHHHHHTCSEEECCCSS
T ss_pred ----EecCCCCHHH-HHHHHHHHHHHCcCEEECCCCC
No 412
>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A
Probab=30.40 E-value=2e+02 Score=27.04 Aligned_cols=108 Identities=11% Similarity=0.035 Sum_probs=63.2
Q ss_pred echhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCccee
Q 013861 153 LGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGI 232 (435)
Q Consensus 153 ~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTshGHcGI 232 (435)
+.++ .+.+.++.+++.|+..+++.|. +|+...=..-=-.+.++...+.... |
T Consensus 17 iD~~-~l~~lv~~li~~Gv~gl~v~Gt--------TGE~~~Ls~eEr~~v~~~~~~~~~g-------------------V 68 (288)
T 2nuw_A 17 VNVD-ALKTHAKNLLEKGIDAIFVNGT--------TGLGPALSKDEKRQNLNALYDVTHK-------------------L 68 (288)
T ss_dssp BCHH-HHHHHHHHHHHTTCCEEEETST--------TTTGGGSCHHHHHHHHHHHTTTCSC-------------------E
T ss_pred cCHH-HHHHHHHHHHHcCCCEEEECcc--------ccChhhCCHHHHHHHHHHHHHHhCC-------------------e
Confidence 4443 5888999999999999999996 3433321111123444444444333 3
Q ss_pred ecCCCccccHHHHHHHHHHHHHHHHcCCCee---cCCCC----CCchHHHHHHHHHHCCCCCceeechhh
Q 013861 233 VREDGVIMNDETVHQLCKQAVSQARAGADVV---SPSDM----MDGRVGAIRAALDAEGFQHVSIMSYTA 295 (435)
Q Consensus 233 v~e~g~IdND~Tv~~Lak~Avs~A~AGADiV---APSDM----MDGrVgAIR~aLD~~Gf~~v~IMSYSa 295 (435)
+-.-|...-.+|++ .+-..+++|||.| .|.=- -+|-+...++..++. +++||=|-.
T Consensus 69 iaGvg~~~t~~ai~----la~~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~---~lPiilYn~ 131 (288)
T 2nuw_A 69 IFQVGSLNLNDVME----LVKFSNEMDILGVSSHSPYYFPRLPEKFLAKYYEEIARIS---SHSLYIYNY 131 (288)
T ss_dssp EEECCCSCHHHHHH----HHHHHHTSCCSEEEECCCCSSCSCCHHHHHHHHHHHHHHC---CSCEEEEEC
T ss_pred EEeeCCCCHHHHHH----HHHHHHhcCCCEEEEcCCcCCCCCCHHHHHHHHHHHHHhc---CCCEEEEEC
Confidence 32223223344443 3444467899964 45422 267777888877765 578998853
No 413
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=30.24 E-value=71 Score=25.02 Aligned_cols=67 Identities=19% Similarity=0.200 Sum_probs=41.6
Q ss_pred CCCCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhCCCCeEEEEe--chHHHHHHHHHHCCC
Q 013861 324 NPANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAAYQV--SGEYSMIKAGGALKM 396 (435)
Q Consensus 324 dp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~~lPvaaYqV--SGEYaMikaAa~~G~ 396 (435)
-..|..||+...... ..-|+|+... -=|++.=+++++.+|+..+.|+...-. ..+...+..+.+.|.
T Consensus 44 ~~~~~~~al~~l~~~--~~~dlvilD~----~l~~~~g~~~~~~lr~~~~~~iiil~~~~~~~~~~~~~~~~~ga 112 (145)
T 3kyj_B 44 QAANGQEALDKLAAQ--PNVDLILLDI----EMPVMDGMEFLRHAKLKTRAKICMLSSVAVSGSPHAARARELGA 112 (145)
T ss_dssp EESSHHHHHHHHHHC--TTCCEEEECT----TSCCCTTCHHHHHHHHHCCCEEC-CBSSCSTTSSHHHHHHHTTC
T ss_pred EECCHHHHHHHHhcC--CCCCEEEEeC----CCCCCCHHHHHHHHHhcCCCCeEEEEEeccCChHHHHHHHhCCC
Confidence 356888988877652 1589998221 126666789999999888877776654 222233344455554
No 414
>1jfl_A Aspartate racemase; alpha-beta structure, HOMO-dimer, homologous domains, isomer; 1.90A {Pyrococcus horikoshii} SCOP: c.78.2.1 c.78.2.1 PDB: 2dx7_A* 1iu9_A
Probab=30.23 E-value=31 Score=30.96 Aligned_cols=60 Identities=22% Similarity=0.385 Sum_probs=0.0
Q ss_pred hcCCCCCCCccccCCC-CCCHHHHHHHHHhcccc-cccEEecccCCCcccCCCchHHHHHHHHhhCCCCe
Q 013861 309 LDSNPRFGDKKTYQMN-PANYREALVEAQADESE-GADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPI 376 (435)
Q Consensus 309 ~~Sap~fgDRktYQmd-p~N~~EAlre~~~D~~E-GADilM~~~~~~~VKPal~YLDIIr~vk~~~~lPv 376 (435)
+.|.|.|.||..||.+ ..+..+.+.++..-+++ |+|.|+ +==-..- =.+..+++.+++||
T Consensus 39 ~~~~~~i~~r~~~~~~~~~~~~~~l~~~~~~l~~~g~d~iv-------iaCnTa~-~~~~~l~~~~~iPv 100 (228)
T 1jfl_A 39 IFNNPQIPDRTAYILGKGEDPRPQLIWTAKRLEECGADFII-------MPCNTAH-AFVEDIRKAIKIPI 100 (228)
T ss_dssp EEECTTSCCHHHHHTTSSCCCHHHHHHHHHHHHHHTCSEEE-------CSCTGGG-GGHHHHHHHCSSCB
T ss_pred EEeCCCHHHHHHHHHcCCchHHHHHHHHHHHHHHcCCCEEE-------EcCccHH-HHHHHHHHhCCCCE
No 415
>1zcc_A Glycerophosphodiester phosphodiesterase; NYSGXRC, agrobacterium tumefaciens STR. C58, structural genomics; 2.50A {Agrobacterium tumefaciens str} SCOP: c.1.18.3
Probab=30.22 E-value=49 Score=30.21 Aligned_cols=64 Identities=17% Similarity=0.094 Sum_probs=42.5
Q ss_pred cccccEEecccCCCcccCCCc-hHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHH-HHHhcccE
Q 013861 340 SEGADILLFSVLGSQVKPGLP-YLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMC-LRRAGADI 417 (435)
Q Consensus 340 ~EGADilM~~~~~~~VKPal~-YLDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G~ide~~~v~Esl~~-ikRAGAd~ 417 (435)
+-|+|.+- +.-... --+.|+.+++ .+++|.+|-| |.+ |.+.. +.+.|+|.
T Consensus 168 ~~~~~~i~-------~~~~~~~~~~~v~~~~~-~G~~v~~wTv----------------n~~----~~~~~~l~~~Gvdg 219 (248)
T 1zcc_A 168 VHHASIIE-------ITPAQMRRPGIIEASRK-AGLEIMVYYG----------------GDD----MAVHREIATSDVDY 219 (248)
T ss_dssp TTCCSEEE-------ECHHHHHSHHHHHHHHH-HTCEEEEECC----------------CCC----HHHHHHHHHSSCSE
T ss_pred HcCCCEEE-------ecHHHhCCHHHHHHHHH-CCCEEEEECC----------------CCH----HHHHHHHHHcCCCE
Confidence 35788876 321111 1256666664 5899999987 332 33445 67789999
Q ss_pred eehhcHHHHHHHHh
Q 013861 418 ILTYFALQAARCLC 431 (435)
Q Consensus 418 IiTYfA~~~a~~L~ 431 (435)
|||-+-..+.++++
T Consensus 220 IiTD~p~~~~~~~~ 233 (248)
T 1zcc_A 220 INLDRPDLFAAVRS 233 (248)
T ss_dssp EEESCHHHHHHHHH
T ss_pred EEECCHHHHHHHHH
Confidence 99999887777765
No 416
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=30.05 E-value=2.5e+02 Score=26.51 Aligned_cols=110 Identities=15% Similarity=0.193 Sum_probs=63.7
Q ss_pred eechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHC-CCeEEEeeecccCCCCCCcc
Q 013861 152 RLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRY-PDLVIYTDVALDPYSSDGHD 230 (435)
Q Consensus 152 r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~-Pdl~IitDVcLc~YTshGHc 230 (435)
++.++ .+.+.++.+++.|+..+++.|.. |+...=..-=-.+.++...+.. ..+-||+=+
T Consensus 24 ~iD~~-~l~~lv~~li~~Gv~gl~~~Gtt--------GE~~~Ls~~Er~~v~~~~~~~~~grvpviaGv----------- 83 (297)
T 3flu_A 24 SIHYE-QLRDLIDWHIENGTDGIVAVGTT--------GESATLSVEEHTAVIEAVVKHVAKRVPVIAGT----------- 83 (297)
T ss_dssp CBCHH-HHHHHHHHHHHTTCCEEEESSTT--------TTGGGSCHHHHHHHHHHHHHHHTTSSCEEEEC-----------
T ss_pred CcCHH-HHHHHHHHHHHcCCCEEEeCccc--------cCcccCCHHHHHHHHHHHHHHhCCCCcEEEeC-----------
Confidence 34454 58889999999999999999962 3322211111223444444433 334444422
Q ss_pred eeecCCCccccHHHHHHHHHHHHHHHHcCCCee---cCCC---CCCchHHHHHHHHHHCCCCCceeechh
Q 013861 231 GIVREDGVIMNDETVHQLCKQAVSQARAGADVV---SPSD---MMDGRVGAIRAALDAEGFQHVSIMSYT 294 (435)
Q Consensus 231 GIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiV---APSD---MMDGrVgAIR~aLD~~Gf~~v~IMSYS 294 (435)
|...-++|+ +.+-..+++|||.| .|.= --+|-+...|+..+.. +++||=|-
T Consensus 84 ------g~~~t~~ai----~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~---~lPiilYn 140 (297)
T 3flu_A 84 ------GANNTVEAI----ALSQAAEKAGADYTLSVVPYYNKPSQEGIYQHFKTIAEAT---SIPMIIYN 140 (297)
T ss_dssp ------CCSSHHHHH----HHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHC---CSCEEEEE
T ss_pred ------CCcCHHHHH----HHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhC---CCCEEEEE
Confidence 112234444 33444567899954 3431 1267788888887775 68999884
No 417
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=29.92 E-value=69 Score=27.19 Aligned_cols=79 Identities=9% Similarity=0.148 Sum_probs=53.2
Q ss_pred CCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhC-CCCeEEEEechHHHHHHHHHHCCCCch-----
Q 013861 326 ANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMIDE----- 399 (435)
Q Consensus 326 ~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~-~lPvaaYqVSGEYaMikaAa~~G~ide----- 399 (435)
.+..||+... +..|+++... -=|.+.-+++++.+++.. .+|+...--..+...+..+.+.|..+.
T Consensus 32 ~~~~~al~~~-----~~~dlvllD~----~lp~~~g~~~~~~lr~~~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~ 102 (220)
T 1p2f_A 32 LTGEDFLNDE-----EAFHVVVLDV----MLPDYSGYEICRMIKETRPETWVILLTLLSDDESVLKGFEAGADDYVTKPF 102 (220)
T ss_dssp SSHHHHHHCC-----SCCSEEEEES----BCSSSBHHHHHHHHHHHCTTSEEEEEESCCSHHHHHHHHHHTCSEEEESSC
T ss_pred CCHHHHHHhc-----CCCCEEEEeC----CCCCCCHHHHHHHHHhcCCCCcEEEEEcCCCHHHHHHHHHcCCCEEEECCC
Confidence 3556666532 5689888211 126777899999999874 799999887777777777777776542
Q ss_pred -hhHHHHHHHHHHHh
Q 013861 400 -QRVMMESLMCLRRA 413 (435)
Q Consensus 400 -~~~v~Esl~~ikRA 413 (435)
.+.+.+.+..+.+-
T Consensus 103 ~~~~L~~~i~~~~~~ 117 (220)
T 1p2f_A 103 NPEILLARVKRFLER 117 (220)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcc
Confidence 23455666555443
No 418
>3k1d_A 1,4-alpha-glucan-branching enzyme; mycobacterium tuberculosis H37RV, mesophilic human pathogen, RV1326C gene, glycosyl transferase; 2.33A {Mycobacterium tuberculosis}
Probab=29.91 E-value=89 Score=33.86 Aligned_cols=104 Identities=19% Similarity=0.230 Sum_probs=67.7
Q ss_pred chhhhHHHHH-HHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCC------------HHHHHHHHHHHCCCeEEEeeec
Q 013861 154 GWRHGLVQEV-AKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGL------------VPRTIWLLKDRYPDLVIYTDVA 220 (435)
Q Consensus 154 s~~~~l~~~v-~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~------------v~raIr~iK~~~Pdl~IitDVc 220 (435)
++. ++.+++ ..+.++|+++|-|-|+-+. ...++..|++-+. +.+.|+.++++ .|-||.|+.
T Consensus 261 ~~~-~l~~~l~~yLk~lG~t~I~L~Pi~e~---~~~~~wGY~~~~y~a~~~~yGt~~dfk~lV~~~H~~--GI~VilD~V 334 (722)
T 3k1d_A 261 SYR-QLARELTDYIVDQGFTHVELLPVAEH---PFAGSWGYQVTSYYAPTSRFGTPDDFRALVDALHQA--GIGVIVDWV 334 (722)
T ss_dssp CHH-HHHHHHHHHHHHHTCSEEEESCCEEC---SCGGGTTCSCSEEEEECGGGCCHHHHHHHHHHHHHT--TCEEEEEEC
T ss_pred CHH-HHHHHHHHHHHHcCCCeEEECCcccC---CCCCCCCCCcccCcCccccCCCHHHHHHHHHHHHHc--CCEEEEEEE
Confidence 454 578887 8899999999999885321 1123345555444 24566666665 699999999
Q ss_pred ccCCCCCCcc-----e--eec-CC---------C----ccccHHHHHHHHHHHHHHHH-cCCCee
Q 013861 221 LDPYSSDGHD-----G--IVR-ED---------G----VIMNDETVHQLCKQAVSQAR-AGADVV 263 (435)
Q Consensus 221 Lc~YTshGHc-----G--Iv~-e~---------g----~IdND~Tv~~Lak~Avs~A~-AGADiV 263 (435)
+-+...++|. | ... .+ | ...|.+..+.|...+.-..+ -|+|-+
T Consensus 335 ~NH~~~~~~~~~~fdg~~~y~~~d~~~~~~~~Wg~~~ln~~~p~Vr~~l~~~~~~Wl~~~gvDGf 399 (722)
T 3k1d_A 335 PAHFPKDAWALGRFDGTPLYEHSDPKRGEQLDWGTYVFDFGRPEVRNFLVANALYWLQEFHIDGL 399 (722)
T ss_dssp TTCCCCCTTTTTTTTSSCCSBCCCCCSSSTTCCCCCCBCTTSHHHHHHHHHHHHHHHHHSCCCEE
T ss_pred eeccCCccchhhcCCCCcccccCCcccCccCCCCCeeecCCCHHHHHHHHHHHHHHHHHhCCCEE
Confidence 8777655431 1 000 00 0 23577788888888888888 598765
No 419
>2oho_A Glutamate racemase; isomerase; 2.25A {Streptococcus pyogenes m1 gas} PDB: 2ohg_A 2ohv_A*
Probab=29.78 E-value=95 Score=28.92 Aligned_cols=135 Identities=16% Similarity=0.159 Sum_probs=74.8
Q ss_pred HHHHHHHHHCCC--eEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC--------
Q 013861 201 RTIWLLKDRYPD--LVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMD-------- 270 (435)
Q Consensus 201 raIr~iK~~~Pd--l~IitDVcLc~YTshGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMMD-------- 270 (435)
.-.+.|++..|+ ++.++|....||-. -..++-.+.+.+.+-.+.++|||+|.=..--+
T Consensus 26 tv~~~i~~~~P~~~~iy~~D~~~~Pyg~------------~s~~~i~~~~~~~~~~L~~~g~d~iviaCNTas~~~l~~l 93 (273)
T 2oho_A 26 TVVCELIRQLPHEKIVYIGDSARAPYGP------------RPKKQIKEYTWELVNFLLTQNVKMIVFACNTATAVAWEEV 93 (273)
T ss_dssp HHHHHHHHHCTTCCEEEEECGGGCCCTT------------SCHHHHHHHHHHHHHHHHTTTCSEEEECCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCEEEEeCCCCCCCCC------------CCHHHHHHHHHHHHHHHHHCCCCEEEEeCchHhHHHHHHH
Confidence 377888888984 66679999889821 12244455556666666778999875432222
Q ss_pred ---------c-hHHHHHHHHHHCCCCCceeechhhhhcccccccchhhhc--------CCCCCCC-ccccCCCCCCHHHH
Q 013861 271 ---------G-RVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALD--------SNPRFGD-KKTYQMNPANYREA 331 (435)
Q Consensus 271 ---------G-rVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRdA~~--------Sap~fgD-RktYQmdp~N~~EA 331 (435)
| -..+++.++...+..+++|++=..--.|.+|--+=+..+ ..|.|-+ -+.=+++....++.
T Consensus 94 r~~~~iPvigi~epa~~~A~~~~~~~rIgVlaT~~T~~~~~y~~~l~~~~~g~~v~~~~~~~~v~~ie~g~~~~~~~~~~ 173 (273)
T 2oho_A 94 KAALDIPVLGVVLPGASAAIKSTTKGQVGVIGTPMTVASDIYRKKIQLLAPSIQVRSLACPKFVPIVESNEMCSSIAKKI 173 (273)
T ss_dssp HHHCSSCEEESHHHHHHHHHHHCSSSEEEEEECHHHHHHTHHHHHHHHHCTTSEEEEEECTTHHHHHCC-----HHHHHH
T ss_pred HHhCCCCEEeccHHHHHHHHHhcCCCeEEEEECchhhcchHHHHHHHHhCCCCEEEecCCHHHHHHHHCCCCCCHHHHHH
Confidence 2 234466677666667899987655455666632222110 1121100 00111121223566
Q ss_pred HHHHHhcccccccEEe
Q 013861 332 LVEAQADESEGADILL 347 (435)
Q Consensus 332 lre~~~D~~EGADilM 347 (435)
+++....+.+.+|.|+
T Consensus 174 l~~~~~~l~~~~d~iV 189 (273)
T 2oho_A 174 VYDSLAPLVGKIDTLV 189 (273)
T ss_dssp HHHHHTTTTTSCSEEE
T ss_pred HHHHHHHHHhcCCEEE
Confidence 6676666643399998
No 420
>2otd_A Glycerophosphodiester phosphodiesterase; structural genomics PSI-2, protein structure initiative, midwest center for STR genomics, hydrolase; 2.60A {Shigella flexneri}
Probab=29.74 E-value=19 Score=32.64 Aligned_cols=62 Identities=23% Similarity=0.152 Sum_probs=41.9
Q ss_pred cccEEecccCCCcccCCCchHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEeehh
Q 013861 342 GADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTY 421 (435)
Q Consensus 342 GADilM~~~~~~~VKPal~YLDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G~ide~~~v~Esl~~ikRAGAd~IiTY 421 (435)
|+|.+- +.-...--+.|+.+++ .+++|.+|-| |.+ |.+..+.+.|+|.|||-
T Consensus 184 ~~~~i~-------~~~~~~~~~~v~~~~~-~G~~v~~wTv----------------n~~----~~~~~l~~~GvdgI~TD 235 (247)
T 2otd_A 184 GCVSIH-------LNHKLLDKARVMQLKD-AGLRILVYTV----------------NKP----QHAAELLRWGVDCICTD 235 (247)
T ss_dssp TCSEEE-------EEGGGCCHHHHHHHHH-TTCEEEEECC----------------CCH----HHHHHHHHHTCSEEEES
T ss_pred CCeEEe-------cChHhCCHHHHHHHHH-CCCEEEEEcc----------------CCH----HHHHHHHHcCCCEEEeC
Confidence 678776 3222222467888775 6899999988 332 34556678899999998
Q ss_pred cHHHHHHHHh
Q 013861 422 FALQAARCLC 431 (435)
Q Consensus 422 fA~~~a~~L~ 431 (435)
+-..+.++|+
T Consensus 236 ~p~~~~~~l~ 245 (247)
T 2otd_A 236 AIDVIGPNFT 245 (247)
T ss_dssp CTTTSCTTCC
T ss_pred CHHHHHHHHh
Confidence 8666555554
No 421
>3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A*
Probab=29.71 E-value=50 Score=32.49 Aligned_cols=55 Identities=20% Similarity=0.194 Sum_probs=34.5
Q ss_pred cCCCCC--CHHHHHHHHHhcccccccEEecccCCCcccC--CCchHHHHHHHHhhCCCCeEE
Q 013861 321 YQMNPA--NYREALVEAQADESEGADILLFSVLGSQVKP--GLPYLDVIRLLRDKYPLPIAA 378 (435)
Q Consensus 321 YQmdp~--N~~EAlre~~~D~~EGADilM~~~~~~~VKP--al~YLDIIr~vk~~~~lPvaa 378 (435)
--+||. +..++...++.=.+.|+|.+| +||.-=- ...-.+++..+|+.+++|+.-
T Consensus 43 ~liDPdK~~~~~~~~~~~~~~~sGtDai~---VGS~~vt~~~~~~~~~v~~ik~~~~lPvil 101 (286)
T 3vk5_A 43 HIIDPFKVPVTEAVEKAAELTRLGFAAVL---LASTDYESFESHMEPYVAAVKAATPLPVVL 101 (286)
T ss_dssp EEECTTTSCHHHHHHHHHHHHHTTCSCEE---EECSCCSSHHHHHHHHHHHHHHHCSSCEEE
T ss_pred EEECCCCCCcHHHHHHHHHHHhcCCCEEE---EccCCCCcchHHHHHHHHHHHHhCCCCEEE
Confidence 356774 355554444433567999999 2232111 011478999999999999987
No 422
>2pcq_A Putative dihydrodipicolinate synthase; lyase, lysine biosynthesis, dihydrodipicoliante, S genomics, NPPSFA; 2.10A {Thermus thermophilus}
Probab=29.68 E-value=54 Score=30.97 Aligned_cols=55 Identities=18% Similarity=0.120 Sum_probs=33.7
Q ss_pred CCHHHHHHHHHhcccccccEEecccCCCcccC-CCc-hHHHHHHHHhhCCCCeEEEEech
Q 013861 326 ANYREALVEAQADESEGADILLFSVLGSQVKP-GLP-YLDVIRLLRDKYPLPIAAYQVSG 383 (435)
Q Consensus 326 ~N~~EAlre~~~D~~EGADilM~~~~~~~VKP-al~-YLDIIr~vk~~~~lPvaaYqVSG 383 (435)
.|.+|++..++.=.+-|||.+|. +--...|| ... -.+=.+.+.+ ++||..||+-|
T Consensus 72 ~~t~~ai~la~~A~~~Gadavlv-~~P~y~~~~~~~~l~~~f~~va~--~lPiilYn~P~ 128 (283)
T 2pcq_A 72 ETLPQAEGALLEAKAAGAMALLA-TPPRYYHGSLGAGLLRYYEALAE--KMPLFLYHVPQ 128 (283)
T ss_dssp SSHHHHHHHHHHHHHHTCSEEEE-CCCCTTGGGTTTHHHHHHHHHHH--HSCEEEEECHH
T ss_pred CCHHHHHHHHHHHHhcCCCEEEe-cCCcCCCCCCHHHHHHHHHHHhc--CCCEEEEeCcc
Confidence 36889888887766779999991 11122344 110 1222334455 89999999744
No 423
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=29.60 E-value=43 Score=25.30 Aligned_cols=53 Identities=23% Similarity=0.282 Sum_probs=37.0
Q ss_pred cccEEecccCCCcccCCCchHHHHHHHHhh---CCCCeEEEEechHHHHHHHHHHCCCCc
Q 013861 342 GADILLFSVLGSQVKPGLPYLDVIRLLRDK---YPLPIAAYQVSGEYSMIKAGGALKMID 398 (435)
Q Consensus 342 GADilM~~~~~~~VKPal~YLDIIr~vk~~---~~lPvaaYqVSGEYaMikaAa~~G~id 398 (435)
.-|+++.. . --|++.-+++++.+|+. ..+|+...--+++......+.+.|..|
T Consensus 46 ~~dlvi~D---~-~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~ 101 (127)
T 2jba_A 46 WPDLILLA---W-MLPGGSGIQFIKHLRRESMTRDIPVVMLTARGEEEDRVRGLETGADD 101 (127)
T ss_dssp CCSEEEEE---S-EETTEEHHHHHHHHHTSTTTTTSCEEEEEETTHHHHHHTTCCCSCSE
T ss_pred CCCEEEEe---c-CCCCCCHHHHHHHHHhCcccCCCCEEEEeCCCCHHHHHHHHhcCCCe
Confidence 46777711 1 12677779999999986 368999887777776666666666654
No 424
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=29.45 E-value=2.5e+02 Score=26.68 Aligned_cols=110 Identities=18% Similarity=0.250 Sum_probs=63.2
Q ss_pred echhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHC-CCeEEEeeecccCCCCCCcce
Q 013861 153 LGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRY-PDLVIYTDVALDPYSSDGHDG 231 (435)
Q Consensus 153 ~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~-Pdl~IitDVcLc~YTshGHcG 231 (435)
+.++ .+.+.++.+++.|+..+++.|. +|+...=..-=-.+.++...+.. ..+-||+=+
T Consensus 29 iD~~-~l~~lv~~li~~Gv~Gl~v~Gt--------TGE~~~Ls~eEr~~v~~~~~~~~~grvpViaGv------------ 87 (303)
T 2wkj_A 29 LDKA-SLRRLVQFNIQQGIDGLYVGGS--------TGEAFVQSLSEREQVLEIVAEEAKGKIKLIAHV------------ 87 (303)
T ss_dssp BCHH-HHHHHHHHHHHTTCSEEEESST--------TTTGGGSCHHHHHHHHHHHHHHHTTTSEEEEEC------------
T ss_pred cCHH-HHHHHHHHHHHcCCCEEEECee--------ccChhhCCHHHHHHHHHHHHHHhCCCCcEEEec------------
Confidence 3443 5888999999999999999996 23332211111234445444443 345555522
Q ss_pred eecCCCccccHHHHHHHHHHHHHHHHcCCCee---cCCC---CCCchHHHHHHHHHHCCCCCceeechh
Q 013861 232 IVREDGVIMNDETVHQLCKQAVSQARAGADVV---SPSD---MMDGRVGAIRAALDAEGFQHVSIMSYT 294 (435)
Q Consensus 232 Iv~e~g~IdND~Tv~~Lak~Avs~A~AGADiV---APSD---MMDGrVgAIR~aLD~~Gf~~v~IMSYS 294 (435)
|...-.+|++ .+-..+++|||.| .|.= --+|-+...|+..++.+ +++||=|-
T Consensus 88 -----g~~~t~~ai~----la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~--~lPiilYn 145 (303)
T 2wkj_A 88 -----GCVSTAESQQ----LAASAKRYGFDAVSAVTPFYYPFSFEEHCDHYRAIIDSAD--GLPMVVYN 145 (303)
T ss_dssp -----CCSSHHHHHH----HHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHHT--TCCEEEEE
T ss_pred -----CCCCHHHHHH----HHHHHHhCCCCEEEecCCCCCCCCHHHHHHHHHHHHHhCC--CCCEEEEe
Confidence 1112244443 3333467899964 4432 12677777777777653 48888885
No 425
>3out_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, MURI, cell envelope; HET: MSE DGL; 1.65A {Francisella tularensis subsp}
Probab=29.34 E-value=1e+02 Score=29.10 Aligned_cols=138 Identities=13% Similarity=0.086 Sum_probs=82.2
Q ss_pred HHHHHHHHCC--CeEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCch--HHHHH
Q 013861 202 TIWLLKDRYP--DLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGR--VGAIR 277 (435)
Q Consensus 202 aIr~iK~~~P--dl~IitDVcLc~YTshGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMMDGr--VgAIR 277 (435)
..|.|++..| +++-++|.+-.|| |.=+-|+-.+.+.+.+-.+.++|||+|.=..=-+-. +.++|
T Consensus 22 v~~~i~~~lp~~~~iy~~D~a~~PY------------G~~~~~~i~~~~~~~~~~L~~~g~~~iVIACNTa~~~al~~lr 89 (268)
T 3out_A 22 IVKNLMSILPNEDIIYFGDIARIPY------------GTKSRATIQKFAAQTAKFLIDQEVKAIIIACNTISAIAKDIVQ 89 (268)
T ss_dssp HHHHHHHHCTTCCEEEEECTTTCCC------------TTSCHHHHHHHHHHHHHHHHHTTCSEEEECCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCcEEEecCCCCCCC------------CCCCHHHHHHHHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHH
Confidence 4678888898 5889999999999 222445666666677777788899988543322221 23555
Q ss_pred HHH-H-------------HCCCCCceeechhhhhcccccccchhhhc--------CCCCCCC-ccccCCCCCCHHHHHHH
Q 013861 278 AAL-D-------------AEGFQHVSIMSYTAKYASSFYGPFREALD--------SNPRFGD-KKTYQMNPANYREALVE 334 (435)
Q Consensus 278 ~aL-D-------------~~Gf~~v~IMSYSaKyASafYGPFRdA~~--------Sap~fgD-RktYQmdp~N~~EAlre 334 (435)
+.+ + ..+..+|+||+=.+--.|.+|.-.=+..+ ..|.|-+ -+.-+.+-...++.+++
T Consensus 90 ~~~~~iPvigiiep~~~~~~~~~~IGVLaT~~Ti~s~~y~~~l~~~~~~~~V~~~~~~~lV~~vE~g~~~~~~~~~~l~~ 169 (268)
T 3out_A 90 EIAKAIPVIDVITAGVSLVDNLNTVGVIATPATINSNAYALQIHKKNPNIEVYSNPCGLFVSMIEEGFVSGHIVELVAKE 169 (268)
T ss_dssp HHHTTSCEEEHHHHHHHTTTTCSEEEEEECHHHHHHTHHHHHHHHHCTTSEEEEEECTTHHHHHHTTCCSSHHHHHHHHH
T ss_pred HhcCCCCEEeccHHHHHHhccCCeEEEEecCcccccHHHHHHHHHhCCCCEEecCCChHHHHHHHcCCcCCHHHHHHHHH
Confidence 554 1 23456899998777677777742211111 1122100 01111222234667777
Q ss_pred HHhccc-ccccEEecccCCCc
Q 013861 335 AQADES-EGADILLFSVLGSQ 354 (435)
Q Consensus 335 ~~~D~~-EGADilM~~~~~~~ 354 (435)
....+. +|+|.|+ ||-.
T Consensus 170 ~l~~l~~~g~D~iI---LGCT 187 (268)
T 3out_A 170 YLSYFHDKNIQALI---LGCT 187 (268)
T ss_dssp HHGGGTTSCCSEEE---ECST
T ss_pred HHHHHHhCCCCEEE---ECCC
Confidence 777764 6999998 5543
No 426
>3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of dimers, TIM barrel, thermophilic, OLD enzyme; HET: FMN; 1.60A {Thermoanaerobacter pseudethanolicus AT} SCOP: c.1.4.0 PDB: 3krz_A*
Probab=29.17 E-value=1.2e+02 Score=29.71 Aligned_cols=93 Identities=18% Similarity=0.287 Sum_probs=62.0
Q ss_pred HHHHHHHHHHcCCCeEEEeec---------CC--CCCCCcccCcCcCCCCCHHHHHHHHHHHCC-CeEEEeeecccCCCC
Q 013861 159 LVQEVAKARDVGVNSVVLFPK---------VP--DALKSPTGDEAYNDNGLVPRTIWLLKDRYP-DLVIYTDVALDPYSS 226 (435)
Q Consensus 159 l~~~v~~~~~~GI~sv~LFgv---------i~--~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~P-dl~IitDVcLc~YTs 226 (435)
..+-++.+.+.|...|-|-+- -| +.-.|+.|..--|.--++...|+.+|+.++ |.-|..-+..+.|..
T Consensus 145 f~~AA~~a~~aGfDgVEih~ahGYLl~qFlsp~~N~R~D~yGGslenR~rf~~eiv~aVr~avg~d~pv~vRls~~~~~~ 224 (343)
T 3kru_A 145 FGEAAKRANLAGYDVVEIHAAHGYLIHEFLSPLSNKRKDEYGNSIENRARFLIEVIDEVRKNWPENKPIFVRVSADDYME 224 (343)
T ss_dssp HHHHHHHHHHHTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHTSCTTSCEEEEEECCCSST
T ss_pred HHHHHhhccccCCceEEEecccchhHHHhhcccccccchhhccchHhHHHHHHHHHHHHHhcCCccCCeEEEeechhhhc
Confidence 455566678899999999531 12 234677776555565677889999999996 777887777765532
Q ss_pred CCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCC
Q 013861 227 DGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPS 266 (435)
Q Consensus 227 hGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPS 266 (435)
+| .+ ++...+.|-.+.++ +|.|--|
T Consensus 225 ---------~g-~~----~~~~~~~a~~l~~~-vd~i~vs 249 (343)
T 3kru_A 225 ---------GG-IN----IDMMVEYINMIKDK-VDLIDVS 249 (343)
T ss_dssp ---------TS-CC----HHHHHHHHHHHTTT-CSEEEEE
T ss_pred ---------cC-cc----HHHHHHHHHHhhcc-ccEEecc
Confidence 22 22 33344455566777 9998875
No 427
>1vpx_A Protein (transaldolase (EC 2.2.1.2)); TM0295, structural genomics, JOI for structural genomics, JCSG; HET: GOL; 2.40A {Thermotoga maritima} SCOP: c.1.10.1
Probab=29.17 E-value=36 Score=32.12 Aligned_cols=42 Identities=40% Similarity=0.610 Sum_probs=29.5
Q ss_pred HHHHHHHHcCCCeecCC-----CC-CCch--HHHHHHHHHHCCCCCceeec
Q 013861 250 KQAVSQARAGADVVSPS-----DM-MDGR--VGAIRAALDAEGFQHVSIMS 292 (435)
Q Consensus 250 k~Avs~A~AGADiVAPS-----DM-MDGr--VgAIR~aLD~~Gf~~v~IMS 292 (435)
.||+.-|+|||++|+|= |. .||. |..|++.++..|| ++-||.
T Consensus 125 ~QA~laa~AGa~~iSpFVgRidd~g~dG~~~v~~i~~~~~~~~~-~t~iL~ 174 (230)
T 1vpx_A 125 AQAILAAKAGATYVSPFVGRMDDLSNDGMRMLGEIVEIYNNYGF-ETEIIA 174 (230)
T ss_dssp HHHHHHHHHTCSEEEEBHHHHHHTTSCHHHHHHHHHHHHHHHTC-SCEEEE
T ss_pred HHHHHHHhCCCeEEEeccchhhhccccHHHHHHHHHHHHHHcCC-CeEEEe
Confidence 36888899999999992 11 1332 6677788888886 666665
No 428
>2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A*
Probab=29.08 E-value=1e+02 Score=30.45 Aligned_cols=39 Identities=21% Similarity=0.284 Sum_probs=30.8
Q ss_pred cccccEEecccCC-CcccCCCchHHHHHHHHhhC--CCCeEE
Q 013861 340 SEGADILLFSVLG-SQVKPGLPYLDVIRLLRDKY--PLPIAA 378 (435)
Q Consensus 340 ~EGADilM~~~~~-~~VKPal~YLDIIr~vk~~~--~lPvaa 378 (435)
+.|+|.|..|.-| .|..-+.+.++.|.++++.. ++||.+
T Consensus 248 ~~Gad~I~vs~~ggr~~~~g~~~~~~l~~v~~~v~~~ipVia 289 (368)
T 2nli_A 248 KRGASGIWVSNHGARQLYEAPGSFDTLPAIAERVNKRVPIVF 289 (368)
T ss_dssp HTTCSEEEECCGGGTSCSSCCCHHHHHHHHHHHHTTSSCEEE
T ss_pred HcCCCEEEEcCCCcCCCCCCCChHHHHHHHHHHhCCCCeEEE
Confidence 5799999966433 46666788999999999876 689875
No 429
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}
Probab=29.07 E-value=2.6e+02 Score=27.06 Aligned_cols=109 Identities=20% Similarity=0.206 Sum_probs=64.0
Q ss_pred echhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCC-CeEEEeeecccCCCCCCcce
Q 013861 153 LGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYP-DLVIYTDVALDPYSSDGHDG 231 (435)
Q Consensus 153 ~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~P-dl~IitDVcLc~YTshGHcG 231 (435)
+.++ .+.+.++.+++.|+..+++.|. +|+...=..-=-.+.++...+... .+-||+=|.
T Consensus 52 iD~~-~l~~lv~~li~~Gv~Gl~v~Gt--------TGE~~~Ls~eEr~~vi~~~ve~~~grvpViaGvg----------- 111 (332)
T 2r8w_A 52 VDIE-AFSALIARLDAAEVDSVGILGS--------TGIYMYLTREERRRAIEAAATILRGRRTLMAGIG----------- 111 (332)
T ss_dssp BCHH-HHHHHHHHHHHHTCSEEEESST--------TTTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEEC-----------
T ss_pred cCHH-HHHHHHHHHHHcCCCEEEECcc--------ccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecC-----------
Confidence 4453 5888999999999999999996 233332211122345555554432 355554322
Q ss_pred eecCCCccccHHHHHHHHHHHHHHHHcCCCee---cCCC---CCCchHHHHHHHHHHCCCCCceeechh
Q 013861 232 IVREDGVIMNDETVHQLCKQAVSQARAGADVV---SPSD---MMDGRVGAIRAALDAEGFQHVSIMSYT 294 (435)
Q Consensus 232 Iv~e~g~IdND~Tv~~Lak~Avs~A~AGADiV---APSD---MMDGrVgAIR~aLD~~Gf~~v~IMSYS 294 (435)
...-+++++ +++ ..+++|||.| .|.= --+|-+...|+..++. +++||=|-
T Consensus 112 ------~~st~eai~-la~---~A~~~Gadavlv~~P~Y~~~s~~~l~~~f~~VA~a~---~lPiilYn 167 (332)
T 2r8w_A 112 ------ALRTDEAVA-LAK---DAEAAGADALLLAPVSYTPLTQEEAYHHFAAVAGAT---ALPLAIYN 167 (332)
T ss_dssp ------CSSHHHHHH-HHH---HHHHHTCSEEEECCCCSSCCCHHHHHHHHHHHHHHC---SSCEEEEC
T ss_pred ------CCCHHHHHH-HHH---HHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhc---CCCEEEEe
Confidence 112244443 333 3467899965 3431 1267788888877765 57888875
No 430
>1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A*
Probab=29.01 E-value=2.4e+02 Score=26.64 Aligned_cols=108 Identities=11% Similarity=0.033 Sum_probs=64.3
Q ss_pred echhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCccee
Q 013861 153 LGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGI 232 (435)
Q Consensus 153 ~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTshGHcGI 232 (435)
+.++ .+.+.++.+++.|+..+++.|. +|+...=..-=-.+.++...+.... |
T Consensus 17 iD~~-~l~~lv~~li~~Gv~gl~~~Gt--------tGE~~~Ls~eEr~~v~~~~~~~~~g-------------------v 68 (293)
T 1w3i_A 17 IDKE-KLKIHAENLIRKGIDKLFVNGT--------TGLGPSLSPEEKLENLKAVYDVTNK-------------------I 68 (293)
T ss_dssp BCHH-HHHHHHHHHHHTTCCEEEESST--------TTTGGGSCHHHHHHHHHHHHTTCSC-------------------E
T ss_pred cCHH-HHHHHHHHHHHcCCCEEEECcc--------ccChhhCCHHHHHHHHHHHHHHcCC-------------------E
Confidence 4443 5888999999999999999996 2333322111233555666555444 2
Q ss_pred ecCCCccccHHHHHHHHHHHHHHHHcCCCee---cCCCC----CCchHHHHHHHHHHCCCCCceeechhh
Q 013861 233 VREDGVIMNDETVHQLCKQAVSQARAGADVV---SPSDM----MDGRVGAIRAALDAEGFQHVSIMSYTA 295 (435)
Q Consensus 233 v~e~g~IdND~Tv~~Lak~Avs~A~AGADiV---APSDM----MDGrVgAIR~aLD~~Gf~~v~IMSYSa 295 (435)
+-.-|...-++|++ .+-..+++|||.| .|.=- -+|-+...|+..++. +++||=|-.
T Consensus 69 iaGvg~~~t~~ai~----la~~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~---~lPiilYn~ 131 (293)
T 1w3i_A 69 IFQVGGLNLDDAIR----LAKLSKDFDIVGIASYAPYYYPRMSEKHLVKYFKTLCEVS---PHPVYLYNY 131 (293)
T ss_dssp EEECCCSCHHHHHH----HHHHGGGSCCSEEEEECCCSCSSCCHHHHHHHHHHHHHHC---SSCEEEEEC
T ss_pred EEecCCCCHHHHHH----HHHHHHhcCCCEEEEcCCCCCCCCCHHHHHHHHHHHHhhC---CCCEEEEEC
Confidence 22122223344543 3334467899965 44322 267777888877765 578998853
No 431
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A
Probab=28.87 E-value=2.2e+02 Score=27.16 Aligned_cols=111 Identities=16% Similarity=0.239 Sum_probs=62.6
Q ss_pred eechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHC-CCeEEEeeecccCCCCCCcc
Q 013861 152 RLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRY-PDLVIYTDVALDPYSSDGHD 230 (435)
Q Consensus 152 r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~-Pdl~IitDVcLc~YTshGHc 230 (435)
++.++ .+.+.++.+++.|+..+++.|. +|+...=..-=-.+.++...+.. ..+-||+=+
T Consensus 29 ~iD~~-~l~~lv~~li~~Gv~gl~v~Gt--------TGE~~~Ls~eEr~~vi~~~~~~~~grvpViaGv----------- 88 (306)
T 1o5k_A 29 ELDLE-SYERLVRYQLENGVNALIVLGT--------TGESPTVNEDEREKLVSRTLEIVDGKIPVIVGA----------- 88 (306)
T ss_dssp EECHH-HHHHHHHHHHHTTCCEEEESSG--------GGTGGGCCHHHHHHHHHHHHHHHTTSSCEEEEC-----------
T ss_pred CcCHH-HHHHHHHHHHHcCCCEEEeCcc--------ccchhhCCHHHHHHHHHHHHHHhCCCCeEEEcC-----------
Confidence 44554 5889999999999999999996 34433321112234444444443 234344322
Q ss_pred eeecCCCccccHHHHHHHHHHHHHHHHcCCCee---cCCC---CCCchHHHHHHHHHHCCCCCceeechhh
Q 013861 231 GIVREDGVIMNDETVHQLCKQAVSQARAGADVV---SPSD---MMDGRVGAIRAALDAEGFQHVSIMSYTA 295 (435)
Q Consensus 231 GIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiV---APSD---MMDGrVgAIR~aLD~~Gf~~v~IMSYSa 295 (435)
|...-++|++ +++ ..+++|||.| .|.= --+|-+...|+..++. +++||=|-.
T Consensus 89 ------g~~st~~ai~-la~---~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~---~lPiilYn~ 146 (306)
T 1o5k_A 89 ------GTNSTEKTLK-LVK---QAEKLGANGVLVVTPYYNKPTQEGLYQHYKYISERT---DLGIVVYNV 146 (306)
T ss_dssp ------CCSCHHHHHH-HHH---HHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHTTC---SSCEEEEEC
T ss_pred ------CCccHHHHHH-HHH---HHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhC---CCCEEEEeC
Confidence 2112244443 333 3467899965 4431 1166777777766543 689998853
No 432
>3hh1_A Tetrapyrrole methylase family protein; chlorobium tepidum, structural genom 2, protein structure initiative; 1.85A {Chlorobaculum tepidum}
Probab=28.77 E-value=58 Score=26.56 Aligned_cols=84 Identities=18% Similarity=0.262 Sum_probs=54.6
Q ss_pred CCCCCHHHHHHHHHHHCCCeEEEeee-----cccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCC-
Q 013861 194 NDNGLVPRTIWLLKDRYPDLVIYTDV-----ALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSD- 267 (435)
Q Consensus 194 ~~~g~v~raIr~iK~~~Pdl~IitDV-----cLc~YTshGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSD- 267 (435)
|++-+..+|+++|++. |+++.-|. -|..+...| +-++.- + ..+-+..++..+.+++.|-+|+--||
T Consensus 17 d~~~lT~~a~~~L~~a--dvv~~~~~~~~~~~l~~~~~~~-~~~~~~-~----~~~~~~~~~~i~~~~~~G~~V~~l~d~ 88 (117)
T 3hh1_A 17 NLDDMTFRAVNTLRNA--GAIACEDTRRTSILLKHFGIEG-KRLVSY-H----SFNEERAVRQVIELLEEGSDVALVTDA 88 (117)
T ss_dssp CGGGSCHHHHHHHHHC--SEEEESCHHHHHHHHHHTTCCS-CCEEEC-C----STTHHHHHHHHHHHHHTTCCEEEEEET
T ss_pred CHHHhhHHHHHHHHhC--CEEEEecCchHHHHHHHhCCCC-CEEecc-C----CccHHHHHHHHHHHHHCCCeEEEEecC
Confidence 5678999999999987 67766552 233332111 222210 1 11223455677788889999887776
Q ss_pred ---CCCchHHHHHHHHHHCCC
Q 013861 268 ---MMDGRVGAIRAALDAEGF 285 (435)
Q Consensus 268 ---MMDGrVgAIR~aLD~~Gf 285 (435)
+|=|+...+.+.|.+.|+
T Consensus 89 GdP~i~~~~~~l~~~~~~~gi 109 (117)
T 3hh1_A 89 GTPAISDPGYTMASAAHAAGL 109 (117)
T ss_dssp TSCGGGSTTHHHHHHHHHTTC
T ss_pred CcCeEeccHHHHHHHHHHCCC
Confidence 555888999999988887
No 433
>2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A*
Probab=28.72 E-value=78 Score=31.62 Aligned_cols=78 Identities=23% Similarity=0.293 Sum_probs=0.0
Q ss_pred cCC-CCCCHHHHHHHHHhcccccccEEeccc-----------------CCCcc---------------------------
Q 013861 321 YQM-NPANYREALVEAQADESEGADILLFSV-----------------LGSQV--------------------------- 355 (435)
Q Consensus 321 YQm-dp~N~~EAlre~~~D~~EGADilM~~~-----------------~~~~V--------------------------- 355 (435)
+|+ -+.+.......+++=.+.|++.|.+.+ |-..+
T Consensus 151 ~QLy~~~d~~~~~~~~~ra~~~G~~al~itvd~p~~g~R~~d~r~~~~lp~~~~~~n~~~~~~~~~p~~~~~~g~~~~~~ 230 (392)
T 2nzl_A 151 LQLYIYKDREVTKKLVRQAEKMGYKAIFVTVDTPYLGNRLDDVRNRFKLPPQLRMKNFETSTLSFSPEENFGDDSGLAAY 230 (392)
T ss_dssp EEECCBSSHHHHHHHHHHHHHTTCCCEEEECSCSSCCCCHHHHHHTCCCCTTCCCTTC-----------------CHHHH
T ss_pred EEEEecCCHHHHHHHHHHHHHCCCCEEEEeCCCCCccchhHhHhhccCCccccchhhhhhhhcccCccccccCcchHHHH
Q ss_pred -----cCCCchHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEee
Q 013861 356 -----KPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIIL 419 (435)
Q Consensus 356 -----KPal~YLDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G~ide~~~v~Esl~~ikRAGAd~Ii 419 (435)
.|.+..-| |+.+|+.+++||.. +||.+ .|....+..+|||.|+
T Consensus 231 ~~~~~d~~~~~~~-i~~lr~~~~~Pviv---------------Kgv~~-----~e~A~~a~~aGad~I~ 278 (392)
T 2nzl_A 231 VAKAIDPSISWED-IKWLRRLTSLPIVA---------------KGILR-----GDDAREAVKHGLNGIL 278 (392)
T ss_dssp HHHHBCTTCCHHH-HHHHC--CCSCEEE---------------EEECC-----HHHHHHHHHTTCCEEE
T ss_pred HhhcCChHHHHHH-HHHHHHhhCCCEEE---------------EecCC-----HHHHHHHHHcCCCEEE
No 434
>3p6l_A Sugar phosphate isomerase/epimerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG; HET: CIT; 1.85A {Parabacteroides distasonis}
Probab=28.65 E-value=2.2e+02 Score=24.98 Aligned_cols=92 Identities=13% Similarity=0.236 Sum_probs=57.0
Q ss_pred HHHcCCCeecCC----------------CCCCchHHHHHHHHHHCCCCCceeechhhhhcccccccchhhhcCCCCCCCc
Q 013861 255 QARAGADVVSPS----------------DMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDK 318 (435)
Q Consensus 255 ~A~AGADiVAPS----------------DMMDGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRdA~~Sap~fgDR 318 (435)
.+++|.|-|=.. ++-+..+..+|+.|++.|++=+++-.| +.
T Consensus 31 ~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~--------~~--------------- 87 (262)
T 3p6l_A 31 TQELGLKYIEIYPGHKLGGKWGDKVFDFNLDAQTQKEIKELAASKGIKIVGTGVY--------VA--------------- 87 (262)
T ss_dssp HHHTTCCEEEECTTEECCGGGTTCEESTTCCHHHHHHHHHHHHHTTCEEEEEEEE--------CC---------------
T ss_pred HHHcCCCEEeecCCcccccccccccccccCCHHHHHHHHHHHHHcCCeEEEEecc--------CC---------------
Confidence 467788877433 344567999999999999854433332 11
Q ss_pred cccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhCCCCeEEEEech
Q 013861 319 KTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAAYQVSG 383 (435)
Q Consensus 319 ktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~~lPvaaYqVSG 383 (435)
......+.++..+. +=||+.|. +-|+--.++-+.++.++.++.++--+..+
T Consensus 88 ----~~~~~~~~~i~~A~---~lGa~~v~-------~~~~~~~~~~l~~~a~~~gv~l~~En~~~ 138 (262)
T 3p6l_A 88 ----EKSSDWEKMFKFAK---AMDLEFIT-------CEPALSDWDLVEKLSKQYNIKISVHNHPQ 138 (262)
T ss_dssp ----SSTTHHHHHHHHHH---HTTCSEEE-------ECCCGGGHHHHHHHHHHHTCEEEEECCSS
T ss_pred ----ccHHHHHHHHHHHH---HcCCCEEE-------ecCCHHHHHHHHHHHHHhCCEEEEEeCCC
Confidence 01122333333332 24899888 77776677777777777788776655544
No 435
>1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1
Probab=28.59 E-value=1.3e+02 Score=29.11 Aligned_cols=89 Identities=21% Similarity=0.227 Sum_probs=55.1
Q ss_pred hcccccccchhhhcCCCCCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhC--CC
Q 013861 297 YASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKY--PL 374 (435)
Q Consensus 297 yASafYGPFRdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~--~l 374 (435)
++.....+++.+....|. . .-.+...+.+| ++++. +.|||+|| +-+ .-++-++++++.. ++
T Consensus 191 ~~Gti~~ai~~~r~~~~~---~-kI~vev~tlee-~~eA~---~aGaD~I~-------ld~--~~~e~l~~~v~~~~~~~ 253 (296)
T 1qap_A 191 ASGSVRQAVEKAFWLHPD---V-PVEVEVENLDE-LDDAL---KAGADIIM-------LDN--FNTDQMREAVKRVNGQA 253 (296)
T ss_dssp HHSSHHHHHHHHHHHSTT---S-CEEEEESSHHH-HHHHH---HTTCSEEE-------ESS--CCHHHHHHHHHTTCTTC
T ss_pred ccCCHHHHHHHHHHhCCC---C-cEEEEeCCHHH-HHHHH---HcCCCEEE-------ECC--CCHHHHHHHHHHhCCCC
Confidence 334455666666655542 2 34556667766 45553 56999999 544 3456666666655 35
Q ss_pred CeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEeehhc
Q 013861 375 PIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTYF 422 (435)
Q Consensus 375 PvaaYqVSGEYaMikaAa~~G~ide~~~v~Esl~~ikRAGAd~IiTYf 422 (435)
|+.| | |-|++ |.+..+..+|+|.|-+-.
T Consensus 254 ~I~A---S------------GGIt~-----~~i~~~a~~GvD~isvGs 281 (296)
T 1qap_A 254 RLEV---S------------GNVTA-----ETLREFAETGVDFISVGA 281 (296)
T ss_dssp CEEE---C------------CCSCH-----HHHHHHHHTTCSEEECSH
T ss_pred eEEE---E------------CCCCH-----HHHHHHHHcCCCEEEEeH
Confidence 5543 3 44564 566788999999997644
No 436
>3m47_A Orotidine 5'-phosphate decarboxylase; orotidine 5'-monophosphate decarboxylase, mutant I218A, LYAS; 1.20A {Methanothermobacter thermautotrophicusdelta H} SCOP: c.1.2.3 PDB: 3li1_A 3m5z_A 3lty_A 3ltp_A* 3g18_A* 3g1d_A* 3g1f_A* 3g1h_A* 3g1a_A* 3lv6_A* 1klz_A* 3g1y_A 3g22_A* 3g24_A* 3p5z_A* 3siz_A* 3sy5_A* 1loq_A* 1lor_A* 1kly_A* ...
Probab=28.57 E-value=32 Score=31.73 Aligned_cols=45 Identities=31% Similarity=0.399 Sum_probs=29.9
Q ss_pred CCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCch-----HHHHHHHHhhCCCCeE
Q 013861 323 MNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPY-----LDVIRLLRDKYPLPIA 377 (435)
Q Consensus 323 mdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~Y-----LDIIr~vk~~~~lPva 377 (435)
+|..|.+|+++-++. +...+| + +|+++.. .++|+.+|+..+.+|+
T Consensus 19 lD~~~~~~a~~~v~~-~~~~v~--~-------~Kvg~~lf~~~G~~~v~~l~~~~g~~v~ 68 (228)
T 3m47_A 19 MDLMNRDDALRVTGE-VREYID--T-------VKIGYPLVLSEGMDIIAEFRKRFGCRII 68 (228)
T ss_dssp CCCCSHHHHHHHHHT-TTTTCS--E-------EEEEHHHHHHHCTHHHHHHHHHHCCEEE
T ss_pred eCCCCHHHHHHHHHH-cCCccc--E-------EEEcHHHHHhcCHHHHHHHHhcCCCeEE
Confidence 689999999888764 333344 4 6676544 5788888885344444
No 437
>1rvk_A Isomerase/lactonizing enzyme; enolase superfamily, MR.GI-17937161, NYSGXRC, target T1522, structural genomics, PSI; 1.70A {Agrobacterium tumefaciens} SCOP: c.1.11.2 d.54.1.1
Probab=28.56 E-value=1.4e+02 Score=28.65 Aligned_cols=139 Identities=16% Similarity=0.101 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHHcCCCeecC--CC-------CCC---chHHHHHHHHHHCCCCCceeechhhhhcccccccchhhhcC
Q 013861 244 TVHQLCKQAVSQARAGADVVSP--SD-------MMD---GRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDS 311 (435)
Q Consensus 244 Tv~~Lak~Avs~A~AGADiVAP--SD-------MMD---GrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRdA~~S 311 (435)
+.+.+++.|....++|.+.|=- .. -++ -+|.+||+++ |. ++.||- +.+
T Consensus 149 ~~e~~~~~a~~~~~~Gf~~iKik~g~~~~~~~~~~~~~~e~v~avr~a~---g~-d~~l~v---Dan------------- 208 (382)
T 1rvk_A 149 TPEDYGRFAETLVKRGYKGIKLHTWMPPVSWAPDVKMDLKACAAVREAV---GP-DIRLMI---DAF------------- 208 (382)
T ss_dssp SHHHHHHHHHHHHHHTCSEEEEECCCTTSTTCCCHHHHHHHHHHHHHHH---CT-TSEEEE---ECC-------------
T ss_pred CHHHHHHHHHHHHHCCCCEEEEcCCcCccccccchHHHHHHHHHHHHHh---CC-CCeEEE---ECC-------------
Confidence 4566777788778889988631 00 011 3566777766 42 566652 111
Q ss_pred CCCCCCccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCC-chHHHHHHHHhhCCCCeEEEEechH-HHHHH
Q 013861 312 NPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGL-PYLDVIRLLRDKYPLPIAAYQVSGE-YSMIK 389 (435)
Q Consensus 312 ap~fgDRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal-~YLDIIr~vk~~~~lPvaaYqVSGE-YaMik 389 (435)
..| +..||++-+..=.+-|.|++= .|-. ..++-.+++++++++||++=.---. -...+
T Consensus 209 -------~~~-----~~~~a~~~~~~l~~~~i~~iE--------~P~~~~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~ 268 (382)
T 1rvk_A 209 -------HWY-----SRTDALALGRGLEKLGFDWIE--------EPMDEQSLSSYKWLSDNLDIPVVGPESAAGKHWHRA 268 (382)
T ss_dssp -------TTC-----CHHHHHHHHHHHHTTTCSEEE--------CCSCTTCHHHHHHHHHHCSSCEEECSSCSSHHHHHH
T ss_pred -------CCC-----CHHHHHHHHHHHHhcCCCEEe--------CCCChhhHHHHHHHHhhCCCCEEEeCCccCcHHHHH
Confidence 122 346766554431123445432 2322 2688899999999999998543222 34566
Q ss_pred HHHHCCCCch-----hh--HHHHHHHHH---HHhcccEeehhc
Q 013861 390 AGGALKMIDE-----QR--VMMESLMCL---RRAGADIILTYF 422 (435)
Q Consensus 390 aAa~~G~ide-----~~--~v~Esl~~i---kRAGAd~IiTYf 422 (435)
...++|.+|- -+ -+.|++... +.+|-.+.+..+
T Consensus 269 ~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~g~~~~~~~~ 311 (382)
T 1rvk_A 269 EWIKAGACDILRTGVNDVGGITPALKTMHLAEAFGMECEVHGN 311 (382)
T ss_dssp HHHHTTCCSEEEECHHHHTSHHHHHHHHHHHHHTTCCEEECCC
T ss_pred HHHHcCCCCEEeeCchhcCCHHHHHHHHHHHHHcCCeEeecCC
Confidence 6667777664 22 255555444 556777777643
No 438
>3lab_A Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) aldolase; unknown function, aldolase superfamily, class I aldolase, KDPG aldolase domain; 1.84A {Oleispira antarctica} PDB: 3vcr_A
Probab=28.54 E-value=38 Score=31.79 Aligned_cols=51 Identities=24% Similarity=0.455 Sum_probs=38.7
Q ss_pred CCCCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEe
Q 013861 145 GAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYT 217 (435)
Q Consensus 145 ~sMPGv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~Iit 217 (435)
..|||+. -.+|+..+++.|..-|-+||- . ..| | ...|+.||.-||++-++.
T Consensus 114 ~~~PG~~-------TptE~~~A~~~Gad~vK~FPa--~----~~g-------G--~~~lkal~~p~p~i~~~p 164 (217)
T 3lab_A 114 VFLPGVA-------TASEVMIAAQAGITQLKCFPA--S----AIG-------G--AKLLKAWSGPFPDIQFCP 164 (217)
T ss_dssp EEEEEEC-------SHHHHHHHHHTTCCEEEETTT--T----TTT-------H--HHHHHHHHTTCTTCEEEE
T ss_pred eEeCCCC-------CHHHHHHHHHcCCCEEEECcc--c----ccc-------C--HHHHHHHHhhhcCceEEE
Confidence 7788881 367889999999999999973 1 111 2 478999999999976654
No 439
>3aty_A Tcoye, prostaglandin F2A synthase; alpha/beta barrel, oxidoreductase, flavin mononucleotide; HET: FMN; 1.70A {Trypanosoma cruzi} PDB: 3atz_A*
Probab=28.32 E-value=1e+02 Score=30.50 Aligned_cols=99 Identities=8% Similarity=-0.092 Sum_probs=58.2
Q ss_pred hHHHHHHHHH-HcCCCeEEEeecC---------CC--CC-CCcccC-cCcCCCCCHHHHHHHHHHHCCCeEEEeeecccC
Q 013861 158 GLVQEVAKAR-DVGVNSVVLFPKV---------PD--AL-KSPTGD-EAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDP 223 (435)
Q Consensus 158 ~l~~~v~~~~-~~GI~sv~LFgvi---------~~--~~-Kd~~Gs-~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~ 223 (435)
...+-++.+. +.|...|-|.+-= |. .. .|+.|- .--|.--++...++.+++++++-.|..-+..+.
T Consensus 175 ~f~~AA~~a~~~aGfDgVEih~a~GYLl~QFlsp~~N~R~~D~yGG~slenR~r~~~eiv~aVr~avg~~~v~vRis~~~ 254 (379)
T 3aty_A 175 LFVEGAKNAIFKAGFDGVEIHGANGYLLDAFFRESSNKRQSGPYAGTTIDTRCQLIYDVTKSVCDAVGSDRVGLRISPLN 254 (379)
T ss_dssp HHHHHHHHHHHTSCCSEEEEEECTTSHHHHHHSTTTCCCCSSTTCTTSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTC
T ss_pred HHHHHHHHHHHhcCCCEEEEcCcCchHHhhccCCCCCccccCCCCccChhhhHHHHHHHHHHHHHhcCCCeEEEEECccc
Confidence 4566777788 9999999996521 21 22 566664 322333356677899999886323554444433
Q ss_pred CCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCC
Q 013861 224 YSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSD 267 (435)
Q Consensus 224 YTshGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSD 267 (435)
+....|. | .+.+...+.+-...++|+|.|.-|.
T Consensus 255 ~~~~~~~------~-----~~~~~~~~la~~l~~~Gvd~i~v~~ 287 (379)
T 3aty_A 255 GVHGMID------S-----NPEALTKHLCKKIEPLSLAYLHYLR 287 (379)
T ss_dssp CGGGCCC------S-----CHHHHHHHHHHHHGGGCCSEEEEEC
T ss_pred ccccCCC------C-----CCHHHHHHHHHHHHHhCCCEEEEcC
Confidence 2111121 1 1334445555567789999997665
No 440
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*
Probab=28.30 E-value=2.1e+02 Score=27.85 Aligned_cols=110 Identities=16% Similarity=0.182 Sum_probs=62.4
Q ss_pred echhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHC-CCeEEEeeecccCCCCCCcce
Q 013861 153 LGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRY-PDLVIYTDVALDPYSSDGHDG 231 (435)
Q Consensus 153 ~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~-Pdl~IitDVcLc~YTshGHcG 231 (435)
+.++ .+.+.++.+++.|+..+++.|.. |+...=..-=-.+.++...+.. ..+-||+=|
T Consensus 49 ID~~-~l~~lv~~li~~Gv~Gl~v~GtT--------GE~~~Ls~eEr~~vi~~~ve~~~grvpViaGv------------ 107 (343)
T 2v9d_A 49 LDKP-GTAALIDDLIKAGVDGLFFLGSG--------GEFSQLGAEERKAIARFAIDHVDRRVPVLIGT------------ 107 (343)
T ss_dssp BCHH-HHHHHHHHHHHTTCSCEEESSTT--------TTGGGSCHHHHHHHHHHHHHHHTTSSCEEEEC------------
T ss_pred cCHH-HHHHHHHHHHHcCCCEEEeCccc--------cChhhCCHHHHHHHHHHHHHHhCCCCcEEEec------------
Confidence 4443 58889999999999999999962 3322211111234444444433 234444322
Q ss_pred eecCCCccccHHHHHHHHHHHHHHHHcCCCee---cCCC---CCCchHHHHHHHHHHCCCCCceeechhh
Q 013861 232 IVREDGVIMNDETVHQLCKQAVSQARAGADVV---SPSD---MMDGRVGAIRAALDAEGFQHVSIMSYTA 295 (435)
Q Consensus 232 Iv~e~g~IdND~Tv~~Lak~Avs~A~AGADiV---APSD---MMDGrVgAIR~aLD~~Gf~~v~IMSYSa 295 (435)
|...-++|++ +++ ..+++|||.| .|.= --+|-+...++..++. +++||=|-.
T Consensus 108 -----g~~st~eai~-la~---~A~~~Gadavlv~~P~Y~~~s~~~l~~~f~~VA~a~---~lPiilYn~ 165 (343)
T 2v9d_A 108 -----GGTNARETIE-LSQ---HAQQAGADGIVVINPYYWKVSEANLIRYFEQVADSV---TLPVMLYNF 165 (343)
T ss_dssp -----CSSCHHHHHH-HHH---HHHHHTCSEEEEECCSSSCCCHHHHHHHHHHHHHTC---SSCEEEEEC
T ss_pred -----CCCCHHHHHH-HHH---HHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhc---CCCEEEEeC
Confidence 2222344543 333 3467899964 4432 1267777777777654 679998853
No 441
>1vyr_A Pentaerythritol tetranitrate reductase; oxidoreductase, flavoenzyme, explosive degradation, steroid binding; HET: FMN TNF; 0.9A {Enterobacter cloacae} SCOP: c.1.4.1 PDB: 1gvq_A* 1gvr_A* 1gvs_A* 1h50_A* 1h51_A* 1h60_A* 1h61_A* 1h62_A* 1h63_A* 1gvo_A* 2aba_A* 3f03_K* 3kft_A* 3p7y_A* 3p80_A* 3p81_A* 3p62_A* 3p8i_A* 2abb_A* 3p67_A* ...
Probab=28.15 E-value=2.1e+02 Score=28.07 Aligned_cols=100 Identities=19% Similarity=0.217 Sum_probs=59.6
Q ss_pred hHHHHHHHHHHcCCCeEEEeec---------CC--CCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCC
Q 013861 158 GLVQEVAKARDVGVNSVVLFPK---------VP--DALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSS 226 (435)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgv---------i~--~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTs 226 (435)
...+-++.+.+.|...|-|.+- -| +...|+.|-.--|.--++.+.++.+|+.+++--|.. -|.++..
T Consensus 162 ~f~~aA~~a~~aGfDgVeih~a~GyLl~qFlsp~~N~R~D~yGGslenr~r~~~eiv~avr~~vg~~~v~v--rls~~~~ 239 (364)
T 1vyr_A 162 DFRQAVANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAVCNEWSADRIGI--RVSPIGT 239 (364)
T ss_dssp HHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHSCGGGEEE--EECCSSC
T ss_pred HHHHHHHHHHHcCCCEEEEcCccchHHHhccCCcccccCCcCCcchhcChhhHHHHHHHHHHhcCCCcEEE--EEccccc
Confidence 3555666678999999999542 02 223566665544444567778999999996323433 3333311
Q ss_pred CCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCC
Q 013861 227 DGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSD 267 (435)
Q Consensus 227 hGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSD 267 (435)
|.|+- + + ..+++...+.|-...++|+|.|.-+.
T Consensus 240 --~~~~~-~-~----~~~~~~~~~~a~~l~~~G~d~i~v~~ 272 (364)
T 1vyr_A 240 --FQNVD-N-G----PNEEADALYLIEELAKRGIAYLHMSE 272 (364)
T ss_dssp --BTTBC-C-C----TTHHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred --ccccc-C-C----CCCHHHHHHHHHHHHHhCCCEEEEec
Confidence 11110 1 1 22455556666677899999998664
No 442
>1zja_A Trehalulose synthase; sucrose isomerase, alpha-amylase family, (beta/alpha)8 barrel; 1.60A {Pseudomonas mesoacidophila} PDB: 1zjb_A 2pwd_A* 2pwh_A 2pwg_A 2pwe_A* 2pwf_A* 3gbe_A* 3gbd_A*
Probab=28.14 E-value=90 Score=31.81 Aligned_cols=62 Identities=23% Similarity=0.485 Sum_probs=40.6
Q ss_pred hhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCC---------CCH---HHHHHHHHHHCCCeEEEeeecccCC
Q 013861 157 HGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDN---------GLV---PRTIWLLKDRYPDLVIYTDVALDPY 224 (435)
Q Consensus 157 ~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~---------g~v---~raIr~iK~~~Pdl~IitDVcLc~Y 224 (435)
.++.+.+.-+.++||++|-|-|+.+. +..+..|+.- |-. .+-|+.++++ .|-||-|+-+-+.
T Consensus 32 ~gi~~~Ldyl~~LGv~~I~L~Pi~~~----~~~~~GYd~~dy~~idp~~Gt~~df~~Lv~~aH~~--Gi~VilD~V~NHt 105 (557)
T 1zja_A 32 KGLTEKLDYLKGLGIDAIWINPHYAS----PNTDNGYDISDYREVMKEYGTMEDFDRLMAELKKR--GMRLMVDVVINHS 105 (557)
T ss_dssp HHHHHTHHHHHHHTCCEEEECCCEEC----CCTTTTSSCSEEEEECTTTCCHHHHHHHHHHHHHT--TCEEEEEECCSBC
T ss_pred HHHHHHHHHHHHcCCCEEEECCCccC----CCCCCCCCcccccccCcccCCHHHHHHHHHHHHHC--CCEEEEEEecccc
Confidence 36888899999999999999886432 2222334332 223 3444444444 7999999988654
No 443
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=28.12 E-value=1.6e+02 Score=25.25 Aligned_cols=51 Identities=20% Similarity=0.172 Sum_probs=34.6
Q ss_pred CHHHHHHHHHhccc----------ccccEEecccCCCcccCCCchHHHHHHHHhh-----CCCCeEEEEe
Q 013861 327 NYREALVEAQADES----------EGADILLFSVLGSQVKPGLPYLDVIRLLRDK-----YPLPIAAYQV 381 (435)
Q Consensus 327 N~~EAlre~~~D~~----------EGADilM~~~~~~~VKPal~YLDIIr~vk~~-----~~lPvaaYqV 381 (435)
|..||+........ .--|+|+... .=|.+.=+|+++.+|+. .++||...--
T Consensus 94 ~~~eal~~l~~~~~~~~~~~~~~~~~~dlillD~----~lp~~~G~el~~~lr~~~~~~~~~~piI~ls~ 159 (206)
T 3mm4_A 94 SGKEALRLVTEGLTQREEQGSVDKLPFDYIFMDC----QMPEMDGYEATREIRKVEKSYGVRTPIIAVSG 159 (206)
T ss_dssp SHHHHHHHHHHHHHHHHHHTCSSCCSCSEEEEES----CCSSSCHHHHHHHHHHHHHTTTCCCCEEEEES
T ss_pred CHHHHHHHHHhhcccccccccccCCCCCEEEEcC----CCCCCCHHHHHHHHHhhhhhcCCCCcEEEEEC
Confidence 67777776665321 2578888221 12777889999999985 5689887654
No 444
>1o5o_A Uracil phosphoribosyltransferase; TM0721, structural genomic PSI, protein structure initiative, joint center for structu genomics; HET: U5P; 2.30A {Thermotoga maritima} SCOP: c.61.1.1
Probab=28.11 E-value=94 Score=28.95 Aligned_cols=44 Identities=16% Similarity=0.431 Sum_probs=35.7
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEee
Q 013861 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTD 218 (435)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitD 218 (435)
.+..-++.+.+.|.++|.+.-.|- -+.+++.|.+.||++.|+|+
T Consensus 151 Tl~~ai~~L~~~G~~~I~~~~lv~-----------------~~~g~~~l~~~~p~v~I~t~ 194 (221)
T 1o5o_A 151 SSIKAIEILKENGAKKITLVALIA-----------------APEGVEAVEKKYEDVKIYVA 194 (221)
T ss_dssp HHHHHHHHHHHTTCCEEEEECSEE-----------------CHHHHHHHHHHCTTCEEEES
T ss_pred HHHHHHHHHHHcCCCEEEEEEEEe-----------------CHHHHHHHHHHCCCcEEEEE
Confidence 588899999999999988855322 13489999999999999996
No 445
>1f6y_A 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; carbon dioxide fixation, cobalamin, methyltatrahydrofolate; 2.20A {Moorella thermoacetica} SCOP: c.1.21.2 PDB: 2e7f_A* 4djd_A* 4dje_A* 4djf_A* 2ogy_A*
Probab=28.08 E-value=1.1e+02 Score=28.96 Aligned_cols=94 Identities=17% Similarity=0.116 Sum_probs=53.4
Q ss_pred CCHHHHHHHHHhcccccccEEecccCCC-cccCCCchHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHC--C--CCch-
Q 013861 326 ANYREALVEAQADESEGADILLFSVLGS-QVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGAL--K--MIDE- 399 (435)
Q Consensus 326 ~N~~EAlre~~~D~~EGADilM~~~~~~-~VKPal~YLDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~--G--~ide- 399 (435)
.+.++|+..++.-+++|||||=... |+ .|-+.--.--+|..+++.+++|+..=-- .-..+++|.+. | +++.
T Consensus 22 ~~~~~a~~~a~~~v~~GAdiIDIg~-g~~~v~~~ee~~rvv~~i~~~~~~pisIDT~--~~~v~~aAl~a~~Ga~iINdv 98 (262)
T 1f6y_A 22 RDPAPVQEWARRQEEGGARALDLNV-GPAVQDKVSAMEWLVEVTQEVSNLTLCLDST--NIKAIEAGLKKCKNRAMINST 98 (262)
T ss_dssp TCHHHHHHHHHHHHHHTCSEEEEBC-C----CHHHHHHHHHHHHHTTCCSEEEEECS--CHHHHHHHHHHCSSCEEEEEE
T ss_pred CCHHHHHHHHHHHHHCCCcEEEECC-CCCCCChHHHHHHHHHHHHHhCCCeEEEeCC--CHHHHHHHHhhCCCCCEEEEC
Confidence 3678999999999999999998332 21 1222222344566666777888865322 33445555553 3 2221
Q ss_pred ---hhHHHHHHHHHHHhcccEeehhc
Q 013861 400 ---QRVMMESLMCLRRAGADIILTYF 422 (435)
Q Consensus 400 ---~~~v~Esl~~ikRAGAd~IiTYf 422 (435)
+.-+-|.+.-.++.|+-+|+..+
T Consensus 99 s~~~d~~~~~~~~~a~~~~~vvlmh~ 124 (262)
T 1f6y_A 99 NAEREKVEKLFPLAVEHGAALIGLTM 124 (262)
T ss_dssp CSCHHHHHHHHHHHHHTTCEEEEESC
T ss_pred CCCcccHHHHHHHHHHhCCcEEEEcC
Confidence 11112334445667777777554
No 446
>1bf2_A Isoamylase; hydrolase, glycosidase, debranching enzyme; 2.00A {Pseudomonas amyloderamosa} SCOP: b.1.18.2 b.71.1.1 c.1.8.1
Probab=28.03 E-value=1.4e+02 Score=32.05 Aligned_cols=131 Identities=15% Similarity=0.206 Sum_probs=72.7
Q ss_pred CceeeEEEeeCCCCcccCCCCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCC---------CcccCcCcCCCCC
Q 013861 128 NFVYPLFIHEGEEDTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALK---------SPTGDEAYNDNGL 198 (435)
Q Consensus 128 ~LI~PlFV~eg~~~~~I~sMPGv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~K---------d~~Gs~A~~~~g~ 198 (435)
-.||=|+|..=.... ++.|.-++-++. ++.+.+..+.++||++|-|-|+-+...- +..++..|++-++
T Consensus 179 ~vIYe~hv~~f~~~~--~~~~~~~~Gt~~-gl~~~l~yLk~LGvt~V~L~Pi~~~~~~~~~~~~~~~g~~~~wGY~~~dy 255 (750)
T 1bf2_A 179 DVIYEVHVRGFTEQD--TSIPAQYRGTYY-GAGLKASYLASLGVTAVEFLPVQETQNDANDVVPNSDANQNYWGYMTENY 255 (750)
T ss_dssp CCEEEECHHHHHTTC--TTSCGGGTTSHH-HHHHTHHHHHHHTCCEEEESCCBCBSCTTTTSSTTCCTTCCCSCCCBSCS
T ss_pred cEEEEEEhhHhhCcC--CCCCccCCcCHH-HHHHHHHHHHHcCCCEEEECCcccCccccccccccccccccccCcCcccc
Confidence 457777764211100 011222233454 6888899999999999999886432111 1112334443322
Q ss_pred -------------------HHHHHHHHHHHCCCeEEEeeecccCCCCCCcce-------------------eec--CC-C
Q 013861 199 -------------------VPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDG-------------------IVR--ED-G 237 (435)
Q Consensus 199 -------------------v~raIr~iK~~~Pdl~IitDVcLc~YTshGHcG-------------------Iv~--e~-g 237 (435)
+.+.|+.++++ .|-||-||-+-+....++.| ..+ .+ +
T Consensus 256 ~~~~~~yGt~~~~~~~~~efk~lV~~~H~~--Gi~VilDvV~NH~~~~~~~~~~d~~~~p~~~~~~~d~~~~y~~~~~~~ 333 (750)
T 1bf2_A 256 FSPDRRYAYNKAAGGPTAEFQAMVQAFHNA--GIKVYMDVVYNHTAEGGTWTSSDPTTATIYSWRGLDNATYYELTSGNQ 333 (750)
T ss_dssp SCBCGGGCSCCSTTHHHHHHHHHHHHHHHT--TCEEEEEECCSSCTTCSBSSSSCSSCBBCSSHHHHHHHHHBCBCTTSS
T ss_pred cccCccccCCCCCccHHHHHHHHHHHHHHC--CCEEEEEEecccccCcccccccccccCCCcccccCCCCcceEECCCCC
Confidence 22344444444 79999999987765544444 010 00 1
Q ss_pred ------------ccccHHHHHHHHHHHHHHHH-cCCCee
Q 013861 238 ------------VIMNDETVHQLCKQAVSQAR-AGADVV 263 (435)
Q Consensus 238 ------------~IdND~Tv~~Lak~Avs~A~-AGADiV 263 (435)
...|.+..+.+...+.-.++ .|+|-+
T Consensus 334 ~~~~~~g~~~~ln~~~p~V~~~i~d~l~~W~~e~gvDGf 372 (750)
T 1bf2_A 334 YFYDNTGIGANFNTYNTVAQNLIVDSLAYWANTMGVDGF 372 (750)
T ss_dssp SBCCSSSSSCCBCTTSHHHHHHHHHHHHHHHHTSCCCEE
T ss_pred ceecCCCcCCccccCCHHHHHHHHHHHHHHHHHcCCcEE
Confidence 12355667777777777776 788743
No 447
>1ub3_A Aldolase protein; schiff base, deoxyribose phosphate, carbinolamine, structural genomics, riken structural genomics/proteomics initiative; HET: HPD; 1.40A {Thermus thermophilus} SCOP: c.1.10.1 PDB: 1j2w_A*
Probab=27.95 E-value=1.3e+02 Score=27.74 Aligned_cols=81 Identities=21% Similarity=0.294 Sum_probs=53.2
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCC--eEEEeeecccCCCCCCcceeecC
Q 013861 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPD--LVIYTDVALDPYSSDGHDGIVRE 235 (435)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pd--l~IitDVcLc~YTshGHcGIv~e 235 (435)
..+.|++++++.|-..|-+--.+. ..|+ .....+.+=|+.+++..++ |=||-..|+
T Consensus 72 ~k~~e~~~Ai~~GAdevd~vinig-~~~~-------g~~~~v~~ei~~v~~a~~~~~lkvIlet~~-------------- 129 (220)
T 1ub3_A 72 VKALEAALACARGADEVDMVLHLG-RAKA-------GDLDYLEAEVRAVREAVPQAVLKVILETGY-------------- 129 (220)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCHH-HHHT-------TCHHHHHHHHHHHHHHSTTSEEEEECCGGG--------------
T ss_pred HHHHHHHHHHHcCCCEEEecccch-hhhC-------CCHHHHHHHHHHHHHHHcCCCceEEEecCC--------------
Confidence 478999999999999997732222 1222 1224566778888887644 334444443
Q ss_pred CCccccHHHHHHHHHHHHHHHHcCCCeecCCC
Q 013861 236 DGVIMNDETVHQLCKQAVSQARAGADVVSPSD 267 (435)
Q Consensus 236 ~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSD 267 (435)
. +|+-+...|+.| +++|||+|=.|-
T Consensus 130 ---l-~~e~i~~a~~ia---~eaGADfVKTsT 154 (220)
T 1ub3_A 130 ---F-SPEEIARLAEAA---IRGGADFLKTST 154 (220)
T ss_dssp ---S-CHHHHHHHHHHH---HHHTCSEEECCC
T ss_pred ---C-CHHHHHHHHHHH---HHhCCCEEEeCC
Confidence 3 355566666665 589999998884
No 448
>2wnw_A Activated by transcription factor SSRB; hydrolase, salmonella typhimurium, O-glycosyl hydrolase family 30; 2.00A {Salmonella enterica subsp}
Probab=27.92 E-value=2.3e+02 Score=28.58 Aligned_cols=92 Identities=14% Similarity=0.159 Sum_probs=60.4
Q ss_pred HHHHHHHHHCCCeEEEeeecccCC--CCCCc---ceeecCCCccccHHHHHHHHHHHHHHHHcCCCeec-----------
Q 013861 201 RTIWLLKDRYPDLVIYTDVALDPY--SSDGH---DGIVREDGVIMNDETVHQLCKQAVSQARAGADVVS----------- 264 (435)
Q Consensus 201 raIr~iK~~~Pdl~IitDVcLc~Y--TshGH---cGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVA----------- 264 (435)
..++.+|+..|++-|++..-=.|. ++.|+ -|-++. . .-+.--..|++-.-.+.+.|.+|-+
T Consensus 125 ~~lk~A~~~~~~l~i~aspWSpP~wMk~n~~~~~gg~L~~-~--~y~~yA~Ylvk~i~~y~~~Gi~i~~is~qNEP~~~~ 201 (447)
T 2wnw_A 125 PLISGALRLNPHMKLMASPWSPPAFMKTNNDMNGGGKLRR-E--CYADWADIIINYLLEYRRHGINVQALSVQNEPVAVK 201 (447)
T ss_dssp HHHHHHHHHCTTCEEEEEESCCCGGGBTTSCSBSCCBBCG-G--GHHHHHHHHHHHHHHHHHTTCCCCEEESCSSTTCCC
T ss_pred HHHHHHHHhCCCcEEEEecCCCcHHhccCCCcCCCCcCCH-H--HHHHHHHHHHHHHHHHHHcCCCeeEEeeeccCCCCC
Confidence 456677777899999988776663 44443 233321 0 1234456688877778889988644
Q ss_pred --CCCCCCch-----HH-HHHHHHHHCCCCCceeechhh
Q 013861 265 --PSDMMDGR-----VG-AIRAALDAEGFQHVSIMSYTA 295 (435)
Q Consensus 265 --PSDMMDGr-----Vg-AIR~aLD~~Gf~~v~IMSYSa 295 (435)
||.-|+.. |. .++.+|+++|+.+|-||.+-.
T Consensus 202 ~~~s~~~t~~~~~~fik~~L~p~l~~~gl~~~kI~~~D~ 240 (447)
T 2wnw_A 202 TWDSCLYSVEEETAFAVQYLRPRLARQGMDEMEIYIWDH 240 (447)
T ss_dssp SSBCCBCCHHHHHHHHHHTHHHHHHHTTCTTCEEEEEEE
T ss_pred CCCcCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEeCC
Confidence 23334432 55 778899999998899987654
No 449
>2jfq_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: DGL; 2.15A {Staphylococcus aureus}
Probab=27.88 E-value=93 Score=29.36 Aligned_cols=165 Identities=13% Similarity=0.164 Sum_probs=88.0
Q ss_pred HHHHHHHHCCC--eEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC---------
Q 013861 202 TIWLLKDRYPD--LVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMD--------- 270 (435)
Q Consensus 202 aIr~iK~~~Pd--l~IitDVcLc~YTshGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMMD--------- 270 (435)
-.+.|++..|+ ++-++|..-.|| |.-..++-.+++.+.+-.+.++|||+|.=..--+
T Consensus 37 v~~~i~~~~P~~~~iy~~D~~~~Py------------g~~s~~~i~~~~~~~~~~L~~~g~d~IVIaCNTas~~~l~~lr 104 (286)
T 2jfq_A 37 VAKEIMRQLPNETIYYLGDIGRCPY------------GPRPGEQVKQYTVEIARKLMEFDIKMLVIACNTATAVALEYLQ 104 (286)
T ss_dssp HHHHHHHHCTTCCEEEEECTTTCCC------------TTSCHHHHHHHHHHHHHHHTTSCCSEEEECCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCccEEEeccCCCCCc------------CCCCHHHHHHHHHHHHHHHHHCCCCEEEEeCCchhHHHHHHHH
Confidence 47788888984 555689999999 2223344444555555556677999875322111
Q ss_pred --------c-hHHHHHHHHHHCCCCCceeechhhhhcccccccchhhhc--------CCCCCCC-ccccCCCCCCH-HHH
Q 013861 271 --------G-RVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALD--------SNPRFGD-KKTYQMNPANY-REA 331 (435)
Q Consensus 271 --------G-rVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRdA~~--------Sap~fgD-RktYQmdp~N~-~EA 331 (435)
| -..+++.++...+..+++||+=..--.|.+|.-.=+..+ ..|.+-+ -+.-+.+.... ++.
T Consensus 105 ~~~~iPVigi~e~a~~~A~~~~~~~rIgVLaT~~T~~~~~y~~~l~~~~~~~~v~~~~~~~~v~~ie~g~~~~~~~~~~~ 184 (286)
T 2jfq_A 105 KTLSISVIGVIEPGARTAIMTTRNQNVLVLGTEGTIKSEAYRTHIKRINPHVEVHGVACPGFVPLVEQMRYSDPTITSIV 184 (286)
T ss_dssp HHCSSEEEESHHHHHHHHHHHCSSSEEEEEECHHHHHHTHHHHHHHHHCTTCEEEEEECTTHHHHHHTTCTTCHHHHHHH
T ss_pred HhCCCCEEeccHHHHHHHHHhcCCCEEEEEeChHHhcchHHHHHHHHhCCCCEEEecCCHHHHHHHHcCCCCCchhHHHH
Confidence 2 233566666655667899987444445555532211110 1122100 00111221123 556
Q ss_pred HHHHHhccc-ccccEEecccCCCcccCCCchHHHHHHHHhhC--CCCeEEEEechHHHHHHH
Q 013861 332 LVEAQADES-EGADILLFSVLGSQVKPGLPYLDVIRLLRDKY--PLPIAAYQVSGEYSMIKA 390 (435)
Q Consensus 332 lre~~~D~~-EGADilM~~~~~~~VKPal~YLDIIr~vk~~~--~lPvaaYqVSGEYaMika 390 (435)
+++....+. +|+|.|+ ||-.= +++ +...+++.+ ++||. ++--++.++
T Consensus 185 l~~~~~~l~~~g~D~IV---LGCTh---~p~--l~~~i~~~l~~~vpvI----Ds~~a~a~~ 234 (286)
T 2jfq_A 185 IHQTLKRWRNSESDTVI---LGCTH---YPL--LYKPIYDYFGGKKTVI----SSGLETARE 234 (286)
T ss_dssp HHHHHGGGTTCSCSEEE---EESSS---GGG--GHHHHHHHTTTCSEEE----EHHHHHHHH
T ss_pred HHHHHHHHHhCCCCEEE---EcCcC---HHH--HHHHHHHHcCCCCEEE----CcHHHHHHH
Confidence 777777764 6999999 44321 122 355556555 56653 444444444
No 450
>1wx0_A Transaldolase; structural genomics, riken structural genomics/proteomics initiative, RSGI, transferas; 2.27A {Thermus thermophilus HB8} SCOP: c.1.10.1
Probab=27.79 E-value=49 Score=30.92 Aligned_cols=44 Identities=34% Similarity=0.502 Sum_probs=30.9
Q ss_pred HHHHHHHHHcCCCeecCC-----CC-CCc--hHHHHHHHHHHCCCCCceeech
Q 013861 249 CKQAVSQARAGADVVSPS-----DM-MDG--RVGAIRAALDAEGFQHVSIMSY 293 (435)
Q Consensus 249 ak~Avs~A~AGADiVAPS-----DM-MDG--rVgAIR~aLD~~Gf~~v~IMSY 293 (435)
..||+.-|+|||++|+|= |. .|| .|..|++.++..|| ++-||.=
T Consensus 121 ~~Qa~~aa~AGa~~iSpFVgRidd~g~~G~~~v~~i~~~~~~~~~-~t~vl~A 172 (223)
T 1wx0_A 121 ANQALLAARAGASYVSPFLGRVDDISWDGGELLREIVEMIQVQDL-PVKVIAA 172 (223)
T ss_dssp HHHHHHHHHTTCSEEEEBHHHHHHTTSCHHHHHHHHHHHHHHTTC-SCEEEEB
T ss_pred HHHHHHHHHCCCeEEEeccchHhhcCCCHHHHHHHHHHHHHHcCC-CeEEeec
Confidence 347888899999999992 11 133 36777888888886 6666653
No 451
>1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A*
Probab=27.77 E-value=66 Score=31.76 Aligned_cols=27 Identities=22% Similarity=0.443 Sum_probs=21.6
Q ss_pred CCcccCCCchHHHHHHHHhhCCCCeEEE
Q 013861 352 GSQVKPGLPYLDVIRLLRDKYPLPIAAY 379 (435)
Q Consensus 352 ~~~VKPal~YLDIIr~vk~~~~lPvaaY 379 (435)
+.++.|... +|+|+.+++.+++||..=
T Consensus 205 ~~~~~p~~~-~~~i~~i~~~~~~Pv~vk 231 (380)
T 1p4c_A 205 SRQMDASFN-WEALRWLRDLWPHKLLVK 231 (380)
T ss_dssp SSCCCTTCC-HHHHHHHHHHCCSEEEEE
T ss_pred HhhcCcccc-HHHHHHHHHhcCCCEEEE
Confidence 445788776 599999999999998743
No 452
>1l6w_A Fructose-6-phosphate aldolase 1; alpha-beta barrel, domain swapping, lyase; 1.93A {Escherichia coli} SCOP: c.1.10.1
Probab=27.75 E-value=40 Score=31.54 Aligned_cols=43 Identities=23% Similarity=0.327 Sum_probs=30.3
Q ss_pred HHHHHHHHHcCCCeecCC-----CC-CCc--hHHHHHHHHHHCCCCCceeec
Q 013861 249 CKQAVSQARAGADVVSPS-----DM-MDG--RVGAIRAALDAEGFQHVSIMS 292 (435)
Q Consensus 249 ak~Avs~A~AGADiVAPS-----DM-MDG--rVgAIR~aLD~~Gf~~v~IMS 292 (435)
..||+.-|+|||++|+|= |. .|| .|..|++.++..|| ++-||.
T Consensus 114 ~~QA~~aa~AGa~~iSpfvgRidd~g~~G~~~i~~~~~~y~~~~~-~t~il~ 164 (220)
T 1l6w_A 114 AAQGLLSALAGAEYVAPYVNRIDAQGGSGIQTVTDLHQLLKMHAP-QAKVLA 164 (220)
T ss_dssp HHHHHHHHHHTCSEEEEBHHHHHHTTSCHHHHHHHHHHHHHHHCT-TCEEEE
T ss_pred HHHHHHHHHCCCeEEEeccchhhcccccHHHHHHHHHHHHHhcCC-CeEEee
Confidence 457888899999999992 11 233 36677788888886 666664
No 453
>3i65_A Dihydroorotate dehydrogenase homolog, mitochondrial; triazolopyrimidine,inhibitor, DSM1, FAD, flavoprotein, membrane, mitochondrion; HET: JZ8 FMN ORO LDA; 2.00A {Plasmodium falciparum 3D7} PDB: 3i68_A* 3i6r_A* 3o8a_A* 3sfk_A*
Probab=27.74 E-value=66 Score=32.86 Aligned_cols=78 Identities=23% Similarity=0.183 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHHHhcccc-cccEEecccC------------------CCcccCCCchHHHHHHHHhhC--CCCeEEEEe
Q 013861 323 MNPANYREALVEAQADESE-GADILLFSVL------------------GSQVKPGLPYLDVIRLLRDKY--PLPIAAYQV 381 (435)
Q Consensus 323 mdp~N~~EAlre~~~D~~E-GADilM~~~~------------------~~~VKPal~YLDIIr~vk~~~--~lPvaaYqV 381 (435)
|-|.-..|.+.++..=++| |||.|..+-- |..++|. -+++|+++++.. ++||.+
T Consensus 276 i~pd~~~~~i~~iA~~a~~aGaDgIiv~Ntt~~r~dl~~~~~~~GGlSG~a~~p~--al~~I~~v~~~v~~~iPIIg--- 350 (415)
T 3i65_A 276 LAPDLNQEQKKEIADVLLETNIDGMIISNTTTQINDIKSFENKKGGVSGAKLKDI--STKFICEMYNYTNKQIPIIA--- 350 (415)
T ss_dssp ECSCCCHHHHHHHHHHHHHHTCSEEEECCCBSCCCCCGGGTTCCSEEEEGGGHHH--HHHHHHHHHHHTTTCSCEEE---
T ss_pred ecCCCCHHHHHHHHHHHHHcCCcEEEEeCCCcccccccccccccCCcCCccchHH--HHHHHHHHHHHhCCCCCEEE---
Q ss_pred chHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEeehh
Q 013861 382 SGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTY 421 (435)
Q Consensus 382 SGEYaMikaAa~~G~ide~~~v~Esl~~ikRAGAd~IiTY 421 (435)
.|-|..-+-+.|.|. +|||+|--|
T Consensus 351 ------------~GGI~s~eDa~e~l~----aGAd~VqIg 374 (415)
T 3i65_A 351 ------------SGGIFSGLDALEKIE----AGASVCQLY 374 (415)
T ss_dssp ------------CSSCCSHHHHHHHHH----HTEEEEEES
T ss_pred ------------ECCCCCHHHHHHHHH----cCCCEEEEc
No 454
>3apt_A Methylenetetrahydrofolate reductase; TIM barrel, oxidoreductase, flavin; HET: FAD; 1.85A {Thermus thermophilus} PDB: 3apy_A* 1v93_A*
Probab=27.71 E-value=4.2e+02 Score=25.47 Aligned_cols=115 Identities=16% Similarity=0.251 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCC--HHHHHHHHHHHCCC-eEEEeeecccCCCCCCcceeec
Q 013861 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGL--VPRTIWLLKDRYPD-LVIYTDVALDPYSSDGHDGIVR 234 (435)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~--v~raIr~iK~~~Pd-l~IitDVcLc~YTshGHcGIv~ 234 (435)
.+.+.+..+.++||+.|+...= |..++. |..-..++|+ ....|+.||+.+++ ..|-+ +.-|. ||
T Consensus 87 ~l~~~L~~~~~~GI~niLaLrG--D~p~~~-g~~~~~~~~f~~a~~Lv~~ir~~~g~~f~igv--A~yPE---~H----- 153 (310)
T 3apt_A 87 EVAEVLHRFVESGVENLLALRG--DPPRGE-RVFRPHPEGFRYAAELVALIRERYGDRVSVGG--AAYPE---GH----- 153 (310)
T ss_dssp HHHHHHHHHHHTTCCEEEEECC--CCSTTC-CSCCCCTTSCSSHHHHHHHHHHHHGGGSEEEE--EECTT---CC-----
T ss_pred HHHHHHHHHHHCCCCEEEEEcC--CCCCCC-CCCCCCCCCCCCHHHHHHHHHHhCCCCeEEEE--EeCCC---cC-----
Q ss_pred CCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC-chHHHHHHHHHHCCCCCceee
Q 013861 235 EDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMD-GRVGAIRAALDAEGFQHVSIM 291 (435)
Q Consensus 235 e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMMD-GrVgAIR~aLD~~Gf~~v~IM 291 (435)
-+-.+.+...+--..--+||||.+-.-=..| -.....++.+.+.|.+ ++|+
T Consensus 154 -----p~~~~~~~d~~~Lk~Kv~aGAdf~iTQ~ffD~~~~~~f~~~~r~~Gi~-vPIi 205 (310)
T 3apt_A 154 -----PESESLEADLRHFKAKVEAGLDFAITQLFFNNAHYFGFLERARRAGIG-IPIL 205 (310)
T ss_dssp -----TTSSCHHHHHHHHHHHHHHHCSEEEECCCSCHHHHHHHHHHHHHTTCC-SCEE
T ss_pred -----CCCCCHHHHHHHHHHHHHcCCCEEEecccCCHHHHHHHHHHHHHcCCC-CeEE
No 455
>3vzx_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; 1.54A {Bacillus subtilis} PDB: 3vzy_A* 3vzz_A* 3w00_A* 1viz_A
Probab=27.65 E-value=28 Score=32.82 Aligned_cols=42 Identities=24% Similarity=0.333 Sum_probs=29.6
Q ss_pred HHHHHHHhcccccccEEecccCCCc-ccCCCchHHHHHHHHhhCCCCeEE
Q 013861 330 EALVEAQADESEGADILLFSVLGSQ-VKPGLPYLDVIRLLRDKYPLPIAA 378 (435)
Q Consensus 330 EAlre~~~D~~EGADilM~~~~~~~-VKPal~YLDIIr~vk~~~~lPvaa 378 (435)
+++.++ .+.|+|+|| +=||. |.. ---+++++++|+ +++|+.-
T Consensus 22 ~~~~~~---~~~GtD~i~--vGGs~gvt~-~~~~~~v~~ik~-~~~Pvvl 64 (228)
T 3vzx_A 22 EQLEIL---CESGTDAVI--IGGSDGVTE-DNVLRMMSKVRR-FLVPCVL 64 (228)
T ss_dssp THHHHH---HTSSCSEEE--ECCCSCCCH-HHHHHHHHHHTT-SSSCEEE
T ss_pred HHHHHH---HHcCCCEEE--ECCcCCCCH-HHHHHHHHHhhc-cCCCEEE
Confidence 555554 488999999 44554 332 245889999998 9999764
No 456
>3cwn_A Transaldolase B; directed evolution, cytoplasm, pentose shunt, transferase; 1.40A {Escherichia coli} PDB: 3kof_A 1ucw_A* 1onr_A 1i2r_A 1i2q_A 1i2o_A 1i2p_A 1i2n_A
Probab=27.48 E-value=62 Score=32.11 Aligned_cols=22 Identities=41% Similarity=0.516 Sum_probs=18.7
Q ss_pred HHHHHHHHHcCCCeecCCCCCCchH
Q 013861 249 CKQAVSQARAGADVVSPSDMMDGRV 273 (435)
Q Consensus 249 ak~Avs~A~AGADiVAPSDMMDGrV 273 (435)
..||+.-|+|||.+|+| +=|||
T Consensus 181 ~~Qa~aaa~AGa~~iSp---FVgRi 202 (337)
T 3cwn_A 181 FAQARACAEAGVFLISP---YVGRI 202 (337)
T ss_dssp HHHHHHHHHTTCSEEEE---BSHHH
T ss_pred HHHHHHHHHcCCcEEEe---echhh
Confidence 56999999999999999 55666
No 457
>4g9p_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; oxidoreductase, isoprenoid biosynthesis, non mevalonate PATH iron-sulphur-cluster; HET: CDI MES; 1.55A {Thermus thermophilus} PDB: 2y0f_A*
Probab=27.37 E-value=41 Score=34.60 Aligned_cols=49 Identities=29% Similarity=0.352 Sum_probs=34.7
Q ss_pred cccHHHHHHHHHHHHHHHHcCCCeecCC--CCCC-chHHHHHHHHHHCCCCCceeec
Q 013861 239 IMNDETVHQLCKQAVSQARAGADVVSPS--DMMD-GRVGAIRAALDAEGFQHVSIMS 292 (435)
Q Consensus 239 IdND~Tv~~Lak~Avs~A~AGADiVAPS--DMMD-GrVgAIR~aLD~~Gf~~v~IMS 292 (435)
-|-++|++|+ ..+++||||+|==+ ||=| --+..||+.|+..|+ +|++++
T Consensus 35 ~Dv~aTv~QI----~~L~~aG~eiVRvaVp~~~~A~al~~I~~~l~~~~~-~vPLVA 86 (406)
T 4g9p_A 35 RDVEATTAQV----LELHRAGSEIVRLTVNDEEAAKAVPEIKRRLLAEGV-EVPLVG 86 (406)
T ss_dssp TCHHHHHHHH----HHHHHHTCSEEEEECCSHHHHHHHHHHHHHHHHTTC-CCCEEE
T ss_pred ccHHHHHHHH----HHHHHcCCCEEEEecCCHHHHHhHHHHHHHHHhcCC-CCceEe
Confidence 3456776655 56789999998422 3333 236789999999996 888876
No 458
>4ekj_A Beta-xylosidase; TIM-barrel fold, hemicellulase, hydrolase; 2.50A {Caulobacter vibrioides}
Probab=27.28 E-value=4.4e+02 Score=25.63 Aligned_cols=33 Identities=15% Similarity=0.224 Sum_probs=24.6
Q ss_pred CCceeechhhhHHHHHHHHHHcCCCeEEEeecCC
Q 013861 148 PGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVP 181 (435)
Q Consensus 148 PGv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~ 181 (435)
+|--+|.+. .+-+.++.+.+.|++-++.++..|
T Consensus 76 ~g~~~y~~~-~~D~~~d~~~~~G~~p~~~l~~~P 108 (500)
T 4ekj_A 76 DGKIVYDWT-KIDQLYDALLAKGIKPFIELGFTP 108 (500)
T ss_dssp TTEEEECCH-HHHHHHHHHHHTTCEEEEEECCBC
T ss_pred CCCeecchH-HHHHHHHHHHHCCCEEEEEEeCCc
Confidence 455556664 477788889999999999887655
No 459
>3tr2_A Orotidine 5'-phosphate decarboxylase; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.00A {Coxiella burnetii}
Probab=27.24 E-value=45 Score=31.25 Aligned_cols=46 Identities=13% Similarity=0.125 Sum_probs=31.9
Q ss_pred CCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCch-----HHHHHHHHhhCCCCeEE
Q 013861 322 QMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPY-----LDVIRLLRDKYPLPIAA 378 (435)
Q Consensus 322 Qmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~Y-----LDIIr~vk~~~~lPvaa 378 (435)
=+|+.+.+||+.-+.. +. -.+.+ +|+++.+ .++|+.+|+. +.+|+.
T Consensus 14 ALD~~~~~~al~l~~~-~~--~~v~~-------~Kvg~~lf~~~G~~~v~~L~~~-g~~ifl 64 (239)
T 3tr2_A 14 AIDAGTVEQARAQINP-LT--PELCH-------LKIGSILFTRYGPAFVEELMQK-GYRIFL 64 (239)
T ss_dssp ECCCSSHHHHHHHHTT-CC--TTTCE-------EEEEHHHHHHHHHHHHHHHHHT-TCCEEE
T ss_pred EeCCCCHHHHHHHHHH-hC--CcccE-------EEeCHHHHHhhCHHHHHHHHhc-CCCEEE
Confidence 4688899998766653 33 23456 8998766 6788899874 666653
No 460
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=27.12 E-value=62 Score=24.58 Aligned_cols=50 Identities=18% Similarity=0.179 Sum_probs=34.3
Q ss_pred CHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhh---CCCCeEEEEech
Q 013861 327 NYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDK---YPLPIAAYQVSG 383 (435)
Q Consensus 327 N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~---~~lPvaaYqVSG 383 (435)
|..||+..... +.-|+|+... --|.+.-+++++.+|+. ..+|+...--+.
T Consensus 35 ~~~~a~~~l~~---~~~dlii~D~----~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~ 87 (127)
T 3i42_A 35 SGTDALHAMST---RGYDAVFIDL----NLPDTSGLALVKQLRALPMEKTSKFVAVSGFA 87 (127)
T ss_dssp SHHHHHHHHHH---SCCSEEEEES----BCSSSBHHHHHHHHHHSCCSSCCEEEEEECC-
T ss_pred CHHHHHHHHHh---cCCCEEEEeC----CCCCCCHHHHHHHHHhhhccCCCCEEEEECCc
Confidence 66777776643 4589998221 12677789999999986 368988876543
No 461
>2bmb_A Folic acid synthesis protein FOL1; folate biosynthesis, transferase, ligase, multifunctional enzyme; HET: PMM; 2.3A {Saccharomyces cerevisiae}
Probab=27.08 E-value=79 Score=33.50 Aligned_cols=106 Identities=14% Similarity=0.175 Sum_probs=64.4
Q ss_pred hhcCCC-CCCCccccCCCCCCHHHHHHHHHhccccc-----ccEEecccCCCcccCCCch----------HHHHHHHHh-
Q 013861 308 ALDSNP-RFGDKKTYQMNPANYREALVEAQADESEG-----ADILLFSVLGSQVKPGLPY----------LDVIRLLRD- 370 (435)
Q Consensus 308 A~~Sap-~fgDRktYQmdp~N~~EAlre~~~D~~EG-----ADilM~~~~~~~VKPal~Y----------LDIIr~vk~- 370 (435)
.+.-+| +|-|--.|. .+.++|+..++.=++|| ||||= +=|.--.|+... +-+|+.+++
T Consensus 230 IlNvTPDSFsDGG~~~---~~~~~al~~a~~mv~~G~~~~~AdIID--IGgeSTRPGa~~vs~eEEl~RvvpvI~~i~~~ 304 (545)
T 2bmb_A 230 IFNATPDSFSDGGEHF---ADIESQLNDIIKLCKDALYLHESVIID--VGGCSTRPNSIQASEEEEIRRSIPLIKAIRES 304 (545)
T ss_dssp EEECSCSSTTTTTTTT---TCHHHHHHHHHHHHHHHHTTCSCEEEE--EECSCCSTTCCCCCHHHHHHHHHHHHHHHHHC
T ss_pred EEeCCCCCCcCCCcCc---CCHHHHHHHHHHHHHcCCCCCCceEEE--ECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhh
Confidence 345567 587766665 37899999999999999 99997 333345687554 456777765
Q ss_pred ----hCCCCeEEEEechHHHHHHHHHHCCC--Cch---hhHHHHHHHHHHHh-cccEeeh
Q 013861 371 ----KYPLPIAAYQVSGEYSMIKAGGALKM--IDE---QRVMMESLMCLRRA-GADIILT 420 (435)
Q Consensus 371 ----~~~lPvaaYqVSGEYaMikaAa~~G~--ide---~~~v~Esl~~ikRA-GAd~IiT 420 (435)
..++||..= |=....+++|.++|. |+. ...--+.+.-+++. ||-+|+.
T Consensus 305 ~~~~~~~vpISID--T~~a~VaeaAl~aGadIINDVsg~~~d~~m~~vva~~~~~~vVlm 362 (545)
T 2bmb_A 305 TELPQDKVILSID--TYRSNVAKEAIKVGVDIINDISGGLFDSNMFAVIAENPEICYILS 362 (545)
T ss_dssp SSSCGGGEEEEEE--CCCHHHHHHHHHTTCCEEEETTTTSSCTTHHHHHHTCTTSEEEEE
T ss_pred ccccCCCCeEEEe--CCcHHHHHHHHHcCCCEEEeCCCCcCChHHHHHHHHhCCCeEEEE
Confidence 235666542 223456666666652 220 00001234445677 7777774
No 462
>3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A*
Probab=26.90 E-value=3.7e+02 Score=24.90 Aligned_cols=54 Identities=20% Similarity=0.397 Sum_probs=32.5
Q ss_pred CccccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCC---chHHHHHHHHhhCCCCeE
Q 013861 317 DKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGL---PYLDVIRLLRDKYPLPIA 377 (435)
Q Consensus 317 DRktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal---~YLDIIr~vk~~~~lPva 377 (435)
..+.|.|++ +|.+.++..=.+.|..-|.|+ -|. -|-+ .++++++.+|+. ++.+.
T Consensus 78 ~~~~~~ls~---eei~~~i~~~~~~g~~~i~~~-gGe--~p~~~~~~~~~li~~i~~~-~~~i~ 134 (348)
T 3iix_A 78 NLKRYRMTP---EEIVERARLAVQFGAKTIVLQ-SGE--DPYXMPDVISDIVKEIKKM-GVAVT 134 (348)
T ss_dssp SSCCCBCCH---HHHHHHHHHHHHTTCSEEEEE-ESC--CGGGTTHHHHHHHHHHHTT-SCEEE
T ss_pred CcCceeCCH---HHHHHHHHHHHHCCCCEEEEE-eCC--CCCccHHHHHHHHHHHHhc-CceEE
Confidence 445677765 555555444344688877753 233 2333 368899999987 55554
No 463
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=26.51 E-value=3.8e+02 Score=25.43 Aligned_cols=110 Identities=21% Similarity=0.230 Sum_probs=62.8
Q ss_pred echhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCC-CeEEEeeecccCCCCCCcce
Q 013861 153 LGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYP-DLVIYTDVALDPYSSDGHDG 231 (435)
Q Consensus 153 ~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~P-dl~IitDVcLc~YTshGHcG 231 (435)
+.++ .+.+.++.+++.|+..+++.|.. |+...=..-=-.+.++...+... .+-||+=+
T Consensus 34 iD~~-~l~~lv~~li~~Gv~gl~v~Gtt--------GE~~~Ls~~Er~~v~~~~~~~~~grvpviaGv------------ 92 (304)
T 3cpr_A 34 IDIA-AGREVAAYLVDKGLDSLVLAGTT--------GESPTTTAAEKLELLKAVREEVGDRAKLIAGV------------ 92 (304)
T ss_dssp BCHH-HHHHHHHHHHHTTCCEEEESSTT--------TTTTTSCHHHHHHHHHHHHHHHTTTSEEEEEC------------
T ss_pred cCHH-HHHHHHHHHHHcCCCEEEECccc--------cChhhCCHHHHHHHHHHHHHHhCCCCcEEecC------------
Confidence 4443 58889999999999999999962 33322111112234444444332 34444322
Q ss_pred eecCCCccccHHHHHHHHHHHHHHHHcCCCee---cCCC---CCCchHHHHHHHHHHCCCCCceeechhh
Q 013861 232 IVREDGVIMNDETVHQLCKQAVSQARAGADVV---SPSD---MMDGRVGAIRAALDAEGFQHVSIMSYTA 295 (435)
Q Consensus 232 Iv~e~g~IdND~Tv~~Lak~Avs~A~AGADiV---APSD---MMDGrVgAIR~aLD~~Gf~~v~IMSYSa 295 (435)
|...-.+|++ +++ ..+++|||.| .|.= --+|-+...++..++. +++||=|-.
T Consensus 93 -----g~~st~~ai~-la~---~A~~~Gadavlv~~P~y~~~~~~~l~~~f~~ia~a~---~lPiilYn~ 150 (304)
T 3cpr_A 93 -----GTNNTRTSVE-LAE---AAASAGADGLLVVTPYYSKPSQEGLLAHFGAIAAAT---EVPICLYDI 150 (304)
T ss_dssp -----CCSCHHHHHH-HHH---HHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHC---CSCEEEEEC
T ss_pred -----CCCCHHHHHH-HHH---HHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhc---CCCEEEEeC
Confidence 2222344444 333 3467899964 4431 1267777888777765 578998854
No 464
>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}
Probab=26.47 E-value=1.1e+02 Score=29.23 Aligned_cols=38 Identities=16% Similarity=0.316 Sum_probs=26.2
Q ss_pred cccccEEeccc--CCCcccCCCchHHHHHHHHhhCCCCeEE
Q 013861 340 SEGADILLFSV--LGSQVKPGLPYLDVIRLLRDKYPLPIAA 378 (435)
Q Consensus 340 ~EGADilM~~~--~~~~VKPal~YLDIIr~vk~~~~lPvaa 378 (435)
+.|+|.|.+.. .|.... ..+-+++++++++..++||.+
T Consensus 142 ~~GaD~i~v~g~~~GG~~G-~~~~~~ll~~i~~~~~iPvia 181 (326)
T 3bo9_A 142 RAGADAVIAEGMESGGHIG-EVTTFVLVNKVSRSVNIPVIA 181 (326)
T ss_dssp HTTCSCEEEECTTSSEECC-SSCHHHHHHHHHHHCSSCEEE
T ss_pred HcCCCEEEEECCCCCccCC-CccHHHHHHHHHHHcCCCEEE
Confidence 56999999532 222111 235689999999999999865
No 465
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A
Probab=26.46 E-value=2.8e+02 Score=26.10 Aligned_cols=110 Identities=18% Similarity=0.242 Sum_probs=63.1
Q ss_pred eechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHC-CCeEEEeeecccCCCCCCcc
Q 013861 152 RLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRY-PDLVIYTDVALDPYSSDGHD 230 (435)
Q Consensus 152 r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~-Pdl~IitDVcLc~YTshGHc 230 (435)
.+.++ .+.+.++.+++.|+..+++.|.. |+...=..-=-.+.++...+.. ..+-||+=+
T Consensus 18 ~iD~~-~l~~lv~~li~~Gv~gl~~~Gtt--------GE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGv----------- 77 (291)
T 3tak_A 18 GVDWK-SLEKLVEWHIEQGTNSIVAVGTT--------GEASTLSMEEHTQVIKEIIRVANKRIPIIAGT----------- 77 (291)
T ss_dssp CBCHH-HHHHHHHHHHHHTCCEEEESSTT--------TTGGGSCHHHHHHHHHHHHHHHTTSSCEEEEC-----------
T ss_pred CcCHH-HHHHHHHHHHHCCCCEEEECccc--------cccccCCHHHHHHHHHHHHHHhCCCCeEEEeC-----------
Confidence 34454 58889999999999999999963 3222211111134444444443 234444422
Q ss_pred eeecCCCccccHHHHHHHHHHHHHHHHcCCCee---cCCC---CCCchHHHHHHHHHHCCCCCceeechh
Q 013861 231 GIVREDGVIMNDETVHQLCKQAVSQARAGADVV---SPSD---MMDGRVGAIRAALDAEGFQHVSIMSYT 294 (435)
Q Consensus 231 GIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiV---APSD---MMDGrVgAIR~aLD~~Gf~~v~IMSYS 294 (435)
|...-++|+ +.+-..+++|||.| .|.= --+|-+...|+..+.. +++||=|-
T Consensus 78 ------g~~~t~~ai----~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~ia~a~---~lPiilYn 134 (291)
T 3tak_A 78 ------GANSTREAI----ELTKAAKDLGADAALLVTPYYNKPTQEGLYQHYKAIAEAV---ELPLILYN 134 (291)
T ss_dssp ------CCSSHHHHH----HHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHC---CSCEEEEE
T ss_pred ------CCCCHHHHH----HHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhc---CCCEEEEe
Confidence 111234444 33444467899964 3331 1267888888888776 68899883
No 466
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=26.39 E-value=2.6e+02 Score=24.88 Aligned_cols=64 Identities=17% Similarity=0.090 Sum_probs=41.9
Q ss_pred CHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhC-CCCeEEEEechHHHHHHHHHHCCCC
Q 013861 327 NYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMI 397 (435)
Q Consensus 327 N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~-~lPvaaYqVSGEYaMikaAa~~G~i 397 (435)
|..||+..... +.-|+|+... --|.+.=+++++.+|+.. .+||.++--...-.....+.+.|..
T Consensus 161 ~~~eal~~l~~---~~~dlvl~D~----~mp~~~G~~l~~~ir~~~~~~piI~lt~~~~~~~~~~~~~~G~~ 225 (254)
T 2ayx_A 161 DGVDALNVLSK---NHIDIVLSDV----NMPNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMD 225 (254)
T ss_dssp CSHHHHHHHHH---SCCSEEEEEE----SSCSSCCHHHHHHHHHHHCCSCEEEEESSTTSHHHHHHHHCCCE
T ss_pred CHHHHHHHHHh---CCCCEEEEcC----CCCCCCHHHHHHHHHhcCCCCcEEEEECCCCHHHHHHHHHcCCc
Confidence 56677766543 3478887111 237777899999999865 6999987665544455555555543
No 467
>1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A
Probab=26.32 E-value=48 Score=31.00 Aligned_cols=84 Identities=18% Similarity=0.181 Sum_probs=41.1
Q ss_pred cccEEecccCCCcccC-CCchHHHHHHHHhhCCCCeEEEEechHHH------HHHHHH---HCCCCc------hh---hH
Q 013861 342 GADILLFSVLGSQVKP-GLPYLDVIRLLRDKYPLPIAAYQVSGEYS------MIKAGG---ALKMID------EQ---RV 402 (435)
Q Consensus 342 GADilM~~~~~~~VKP-al~YLDIIr~vk~~~~lPvaaYqVSGEYa------MikaAa---~~G~id------e~---~~ 402 (435)
|||+|...+ ....| +..--+++..+++ ++.|+. ++.+|-|. ..+.+. -.||+- .. .-
T Consensus 36 Gad~ielg~--pr~~~~g~~~~~~~~~l~~-~~~~~~-pn~~~~~~~~~~~~f~~~a~~agg~~~i~l~i~~d~~~~~~e 111 (264)
T 1xm3_A 36 ESDILTFAV--RRMNIFEASQPNFLEQLDL-SKYTLL-PNTAGASTAEEAVRIARLAKASGLCDMIKVEVIGCSRSLLPD 111 (264)
T ss_dssp TCSEEEEET--TSSTTC-------CTTCCG-GGSEEE-EECTTCSSHHHHHHHHHHHHHTTCCSSEEECCBCCTTTCCBC
T ss_pred CCeEEEEcc--cccccCCCCHHHHHHHHHh-cCCeEc-CCccccCCHHHHHHHHHHHHHcCCCCeEEEeecCCCcccccc
Confidence 999998332 33455 4333345555553 445543 56666222 333333 357721 10 11
Q ss_pred HHHHHHHHHHh---cccEe-ehhcHHHHHHH
Q 013861 403 MMESLMCLRRA---GADII-LTYFALQAARC 429 (435)
Q Consensus 403 v~Esl~~ikRA---GAd~I-iTYfA~~~a~~ 429 (435)
..|.+...++. |.+++ ++.-..+-++.
T Consensus 112 ~~~~~~~a~~~~~~g~~vi~~~~~~~~~a~~ 142 (264)
T 1xm3_A 112 PVETLKASEQLLEEGFIVLPYTSDDVVLARK 142 (264)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEECSCHHHHHH
T ss_pred hHHHHHHHHHHHCCCeEEEEEcCCCHHHHHH
Confidence 34666677777 98888 66554444443
No 468
>1zuw_A Glutamate racemase 1; (R)-glutamate, peptidoglycan biosynthesi isomerase; HET: DGL; 1.75A {Bacillus subtilis}
Probab=26.28 E-value=1.3e+02 Score=28.14 Aligned_cols=89 Identities=18% Similarity=0.204 Sum_probs=56.1
Q ss_pred HHHHHHHHCCC--eEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHH-HHH-cCCCeecCCCCCC-------
Q 013861 202 TIWLLKDRYPD--LVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVS-QAR-AGADVVSPSDMMD------- 270 (435)
Q Consensus 202 aIr~iK~~~Pd--l~IitDVcLc~YTshGHcGIv~e~g~IdND~Tv~~Lak~Avs-~A~-AGADiVAPSDMMD------- 270 (435)
..+.|++..|+ ++-++|..-.|| |. .+.+++.....+++. +.+ .|+|+|.=..=-+
T Consensus 18 v~~~i~~~lP~~~~iy~~D~~~~Py------------G~-~s~~~i~~~~~~~~~~L~~~~g~d~iViACNTas~~~l~~ 84 (272)
T 1zuw_A 18 VAKEIMRQLPKENIIYVGDTKRCPY------------GP-RPEEEVLQYTWELTNYLLENHHIKMLVIACNTATAIALDD 84 (272)
T ss_dssp HHHHHHHHSTTCCEEEEECGGGCCC------------SS-SCHHHHHHHHHHHHHHHHHHSCCSEEEECCHHHHHHHHHH
T ss_pred HHHHHHHhCCCCcEEEeccCCCCCC------------CC-CCHHHHHHHHHHHHHHHHhhcCCCEEEEeCchhhHHHHHH
Confidence 47888888995 566699999999 21 234445444444444 445 7999774321111
Q ss_pred ----------c-hHHHHHHHHHHCCCCCceeechhhhhcccccc
Q 013861 271 ----------G-RVGAIRAALDAEGFQHVSIMSYTAKYASSFYG 303 (435)
Q Consensus 271 ----------G-rVgAIR~aLD~~Gf~~v~IMSYSaKyASafYG 303 (435)
| -..+++.++...+..+|+|++=.+--.|.+|.
T Consensus 85 lr~~~~iPVigiiepa~~~A~~~~~~~rIgVlaT~~T~~s~~y~ 128 (272)
T 1zuw_A 85 IQRSVGIPVVGVIQPGARAAIKVTDNQHIGVIGTENTIKSNAYE 128 (272)
T ss_dssp HHHHCSSCEEESHHHHHHHHHHHCSSSEEEEEECHHHHHTTHHH
T ss_pred HHHHCCCCEEcccHHHHHHHHHhcCCCEEEEEEChhhhhhhHHH
Confidence 3 34566777765666789998876656666663
No 469
>1uok_A Oligo-1,6-glucosidase; sugar degradation, hydrolase, TIM-barrel glycosidase; 2.00A {Bacillus cereus} SCOP: b.71.1.1 c.1.8.1
Probab=26.25 E-value=87 Score=31.94 Aligned_cols=60 Identities=15% Similarity=0.432 Sum_probs=40.1
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCC---------C---HHHHHHHHHHHCCCeEEEeeecccC
Q 013861 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNG---------L---VPRTIWLLKDRYPDLVIYTDVALDP 223 (435)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g---------~---v~raIr~iK~~~Pdl~IitDVcLc~ 223 (435)
++.+.+.-+.++||++|-|=|+.+. +..+..|+.-. - +.+-|+.++++ .|-||-|+-+-+
T Consensus 32 gi~~~ldyl~~LGv~~I~l~Pi~~~----~~~~~GYd~~dy~~id~~~Gt~~df~~lv~~~h~~--Gi~VilD~V~NH 103 (558)
T 1uok_A 32 GIISKLDYLKELGIDVIWLSPVYES----PNDDNGYDISDYCKIMNEFGTMEDWDELLHEMHER--NMKLMMDLVVNH 103 (558)
T ss_dssp HHHTTHHHHHHHTCCEEEECCCEEC----CCTTTTSSCSEEEEECGGGCCHHHHHHHHHHHHHT--TCEEEEEECCSB
T ss_pred HHHHHHHHHHHcCCCEEEECCcccC----CCCCCCCCcccccccCcccCCHHHHHHHHHHHHHC--CCEEEEEEeccc
Confidence 5778888999999999999886432 22223444332 2 23445555554 799999998865
No 470
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=26.15 E-value=2.8e+02 Score=26.57 Aligned_cols=110 Identities=23% Similarity=0.287 Sum_probs=64.1
Q ss_pred eechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHC-CCeEEEeeecccCCCCCCcc
Q 013861 152 RLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRY-PDLVIYTDVALDPYSSDGHD 230 (435)
Q Consensus 152 r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~-Pdl~IitDVcLc~YTshGHc 230 (435)
++.++ .+.+.++.+++.|+..+++.|. +|+...=...=-.+.++...+.. ..+-||+=+
T Consensus 40 ~iD~~-~l~~lv~~li~~Gv~Gl~v~Gt--------TGE~~~Ls~~Er~~v~~~~v~~~~grvpViaGv----------- 99 (314)
T 3qze_A 40 RLDWD-SLAKLVDFHLQEGTNAIVAVGT--------TGESATLDVEEHIQVIRRVVDQVKGRIPVIAGT----------- 99 (314)
T ss_dssp CBCHH-HHHHHHHHHHHHTCCEEEESSG--------GGTGGGCCHHHHHHHHHHHHHHHTTSSCEEEEC-----------
T ss_pred CcCHH-HHHHHHHHHHHcCCCEEEECcc--------ccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeC-----------
Confidence 34454 5888899999999999999996 33332211111223444444432 234444422
Q ss_pred eeecCCCccccHHHHHHHHHHHHHHHHcCCCee---cCCC---CCCchHHHHHHHHHHCCCCCceeechh
Q 013861 231 GIVREDGVIMNDETVHQLCKQAVSQARAGADVV---SPSD---MMDGRVGAIRAALDAEGFQHVSIMSYT 294 (435)
Q Consensus 231 GIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiV---APSD---MMDGrVgAIR~aLD~~Gf~~v~IMSYS 294 (435)
|...-++|++ .+-..+++|||.| .|.= --+|-+...|+..+.. +++||=|-
T Consensus 100 ------g~~st~eai~----la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~---~lPiilYn 156 (314)
T 3qze_A 100 ------GANSTREAVA----LTEAAKSGGADACLLVTPYYNKPTQEGMYQHFRHIAEAV---AIPQILYN 156 (314)
T ss_dssp ------CCSSHHHHHH----HHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHS---CSCEEEEE
T ss_pred ------CCcCHHHHHH----HHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhc---CCCEEEEe
Confidence 2222344543 3334467899964 3321 1268888888888776 68999884
No 471
>1lwj_A 4-alpha-glucanotransferase; alpha-amylase family, acarbose, (beta/alpha)8 barrel; HET: ACG; 2.50A {Thermotoga maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1lwh_A*
Probab=26.02 E-value=1.2e+02 Score=29.61 Aligned_cols=61 Identities=18% Similarity=0.317 Sum_probs=41.4
Q ss_pred hhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCC------------HHHHHHHHHHHCCCeEEEeeecccCC
Q 013861 157 HGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGL------------VPRTIWLLKDRYPDLVIYTDVALDPY 224 (435)
Q Consensus 157 ~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~------------v~raIr~iK~~~Pdl~IitDVcLc~Y 224 (435)
.++.+.+..+.++||++|-|=|+.+.. +...|+.-.. +.+.|+.++++ .|-||-|+-+-+-
T Consensus 23 ~gi~~~LdyL~~LGv~~I~L~Pi~~~~-----~~~GY~~~dy~~idp~~Gt~~df~~lv~~aH~~--Gi~VilD~V~NH~ 95 (441)
T 1lwj_A 23 RGLKNAVSYLKELGIDFVWLMPVFSSI-----SFHGYDVVDFYSFKAEYGSEREFKEMIEAFHDS--GIKVVLDLPIHHT 95 (441)
T ss_dssp HHHHHTHHHHHHTTCCEEEECCCEECS-----SSSCCSCSEEEEECTTTCCHHHHHHHHHHHHHT--TCEEEEEECTTBC
T ss_pred HHHHHhhHHHHHcCCCEEEeCCCcCCC-----CCCCCCcccccccCcccCCHHHHHHHHHHHHHC--CCEEEEEeCCCcc
Confidence 368889999999999999998864321 2234443322 33555555555 6999999988654
No 472
>3chv_A Prokaryotic domain of unknown function (DUF849) W barrel fold; TIM barrel fold, structural genomics, joint center for struc genomics; HET: MSE; 1.45A {Silicibacter pomeroyi dss-3} PDB: 3fa5_A
Probab=25.97 E-value=61 Score=31.44 Aligned_cols=57 Identities=12% Similarity=0.153 Sum_probs=44.6
Q ss_pred echhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEe
Q 013861 153 LGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYT 217 (435)
Q Consensus 153 ~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~Iit 217 (435)
++.+ ++.++..++++.|-.-|=|... |+.|...++++ ...+++..||++.||++|-.
T Consensus 31 vTpe-Eia~~A~~~~~AGAaivHlH~R------d~~G~ps~d~~-~~~e~~~~IR~~~pd~ii~~ 87 (284)
T 3chv_A 31 ITVS-EQVESTQEAFEAGAAIAHCHVR------NDDGTPSSDPD-RFARLTEGLHTHCPGMIVQF 87 (284)
T ss_dssp CSHH-HHHHHHHHHHHHTCCEEEECEE------CTTSCEECCHH-HHHHHHHHHHHHSTTCEEEE
T ss_pred CCHH-HHHHHHHHHHHcCCcEEEeeec------CCCCCcCCCHH-HHHHHHHHHHHhCCCeEEEe
Confidence 4555 5999999999999988888654 44477666654 67789999999999988754
No 473
>2i14_A Nicotinate-nucleotide pyrophosphorylase; ligand binding, phosphoribosylpyrophosphate, Zn metal ION, structural genomics, PSI; HET: PCP; 2.90A {Pyrococcus furiosus} SCOP: c.1.17.1 d.41.2.1
Probab=25.95 E-value=1.6e+02 Score=29.54 Aligned_cols=68 Identities=16% Similarity=0.183 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHCCC---eEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHH---cCCCeecCCCCCC--
Q 013861 199 VPRTIWLLKDRYPD---LVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQAR---AGADVVSPSDMMD-- 270 (435)
Q Consensus 199 v~raIr~iK~~~Pd---l~IitDVcLc~YTshGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~---AGADiVAPSDMMD-- 270 (435)
...|++..++.||+ +++-+| .|.+ -.+.|+..++ +|+|+|=.-.|-.
T Consensus 193 ~~~A~~~~~~~~p~~~~~~vlvD----T~d~---------------------~~~~al~~~~~~~~~~d~IrlDs~~~~~ 247 (395)
T 2i14_A 193 QVKAWKYFDEVIEEEVPRIALVD----TFYD---------------------EKVEAVMAAEALGKKLFAVRLDTPSSRR 247 (395)
T ss_dssp HHHHHHHHHHHSCSSSCCEEECC----SSBC---------------------HHHHHHHHHTTTGGGCCEEEECCCTTTC
T ss_pred HHHHHHHHHHhCCCCccEEEEec----cchH---------------------HHHHHHHHHHHhccCCcEEEeCCCCCCc
Confidence 56899999999996 333333 3411 0112333334 7899998776633
Q ss_pred c----hHHHHHHHHHHCCCCCceee
Q 013861 271 G----RVGAIRAALDAEGFQHVSIM 291 (435)
Q Consensus 271 G----rVgAIR~aLD~~Gf~~v~IM 291 (435)
| -|..+|+.||+.||.++.|.
T Consensus 248 gd~~~~v~~~r~~ld~~G~~~~~I~ 272 (395)
T 2i14_A 248 GNFRKIIEEVRWELKVRGYDWVKIF 272 (395)
T ss_dssp SCHHHHHHHHHHHHHHTTCCSCEEE
T ss_pred ccHHHHHHHHHHHHHhCCCCceEEE
Confidence 3 36678899999998777553
No 474
>1xtt_A Probable uracil phosphoribosyltransferase; tetramer, type 1 phosphoribosyltransferase, UMP complex; HET: U5P; 1.80A {Sulfolobus solfataricus} SCOP: c.61.1.1 PDB: 1vst_A* 1xtu_A* 1xtv_A* 3g6w_A*
Probab=25.85 E-value=67 Score=29.81 Aligned_cols=47 Identities=15% Similarity=0.364 Sum_probs=35.4
Q ss_pred hHHHHHHHHHHcCC-CeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccC
Q 013861 158 GLVQEVAKARDVGV-NSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDP 223 (435)
Q Consensus 158 ~l~~~v~~~~~~GI-~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~ 223 (435)
.+..-++.+.+ |. +.|.+.-.|- .+.+++.|.+.|||+-|+| .++|+
T Consensus 148 T~~~ai~~L~~-G~p~~I~~~~~va-----------------a~~gl~~l~~~~P~v~I~t-a~iD~ 195 (216)
T 1xtt_A 148 TMLKVLEEVVK-ANPKRIYIVSIIS-----------------SEYGVNKILSKYPFIYLFT-VAIDP 195 (216)
T ss_dssp HHHHHHHHHGG-GCCSEEEEECSEE-----------------EHHHHHHHHHHCTTSEEEE-SEEES
T ss_pred HHHHHHHHHHh-CCCCeEEEEEEec-----------------CHHHHHHHHHHCCCcEEEE-EEecC
Confidence 58889999999 99 7766643321 2468999999999998887 35665
No 475
>1vd6_A Glycerophosphoryl diester phosphodiesterase; glycerophosphod phosphodiesterase, HB8; 1.30A {Thermus thermophilus} SCOP: c.1.18.3 PDB: 1v8e_A
Probab=25.78 E-value=61 Score=28.99 Aligned_cols=61 Identities=16% Similarity=0.078 Sum_probs=41.4
Q ss_pred ccccEEecccCCCcccCCCchHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEeeh
Q 013861 341 EGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILT 420 (435)
Q Consensus 341 EGADilM~~~~~~~VKPal~YLDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G~ide~~~v~Esl~~ikRAGAd~IiT 420 (435)
-|+|.+- +.-...--+.++.+++ .+++|.+|-| |.+ |.+..+.+.|+|.|+|
T Consensus 162 ~~~~~i~-------~~~~~~~~~~v~~~~~-~G~~v~~wtv----------------n~~----~~~~~l~~~GvdgI~T 213 (224)
T 1vd6_A 162 LGVEAVH-------PHHALVTEEAVAGWRK-RGLFVVAWTV----------------NEE----GEARRLLALGLDGLIG 213 (224)
T ss_dssp SCCSEEE-------EBGGGCCHHHHHHHHH-TTCEEEEECC----------------CCH----HHHHHHHHTTCSEEEE
T ss_pred cCCcEEe-------cCcccCCHHHHHHHHH-CCCEEEEEeC----------------CCH----HHHHHHHhcCCCEEEc
Confidence 4788776 2222223567888775 6899999988 332 3455667889999999
Q ss_pred hcHHHHHHH
Q 013861 421 YFALQAARC 429 (435)
Q Consensus 421 YfA~~~a~~ 429 (435)
-+-..+.++
T Consensus 214 D~p~~~~~~ 222 (224)
T 1vd6_A 214 DRPEVLLPL 222 (224)
T ss_dssp SCHHHHTTS
T ss_pred CCHHHHHHh
Confidence 887665443
No 476
>1dbt_A Orotidine 5'-phosphate decarboxylase; UMP, TIM barrel, lyase; HET: U5P; 2.40A {Bacillus subtilis} SCOP: c.1.2.3
Probab=25.72 E-value=68 Score=29.32 Aligned_cols=45 Identities=27% Similarity=0.335 Sum_probs=30.5
Q ss_pred HHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCC
Q 013861 201 RTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSD 267 (435)
Q Consensus 201 raIr~iK~~~Pdl~IitDVcLc~YTshGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSD 267 (435)
..|+.||+. +..|+.|+-| + |+-.|++..++. ++++|||+|.=.-
T Consensus 45 ~~v~~l~~~--~~~v~lD~kl---------------~--Dip~t~~~~~~~---~~~~Gad~vtvH~ 89 (239)
T 1dbt_A 45 SIVKQLKER--NCELFLDLKL---------------H--DIPTTVNKAMKR---LASLGVDLVNVHA 89 (239)
T ss_dssp HHHHHHHHT--TCEEEEEEEE---------------C--SCHHHHHHHHHH---HHTTTCSEEEEEG
T ss_pred HHHHHHHHC--CCcEEEEecc---------------c--cchHHHHHHHHH---HHhcCCCEEEEeC
Confidence 467778775 4567777755 1 466777765554 5789999995443
No 477
>1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A*
Probab=25.66 E-value=78 Score=31.26 Aligned_cols=39 Identities=26% Similarity=0.334 Sum_probs=29.3
Q ss_pred cccccEEecccC-CCcccCCCchHHHHHHHHhhCCCCeEE
Q 013861 340 SEGADILLFSVL-GSQVKPGLPYLDVIRLLRDKYPLPIAA 378 (435)
Q Consensus 340 ~EGADilM~~~~-~~~VKPal~YLDIIr~vk~~~~lPvaa 378 (435)
+-|||.|..+.- |.|..-+.+.++.|.++++..+.||.+
T Consensus 244 ~aGad~I~vs~~gg~~~d~~~~~~~~l~~v~~~~~~pVia 283 (380)
T 1p4c_A 244 AEGADGVILSNHGGRQLDCAISPMEVLAQSVAKTGKPVLI 283 (380)
T ss_dssp HTTCSEEEECCGGGTSCTTCCCGGGTHHHHHHHHCSCEEE
T ss_pred HcCCCEEEEcCCCCCcCCCCcCHHHHHHHHHHHcCCeEEE
Confidence 579999996543 334444567899999999988888865
No 478
>2hsa_B 12-oxophytodienoate reductase 3; alpha beta 8 barrel, flavoprotein, jasmonate biosynthesis, oxidoreductase; HET: FMN; 1.50A {Solanum lycopersicum} PDB: 2hs6_A* 3hgs_A* 2hs8_A* 3hgo_A* 1q45_A* 2g5w_A* 2q3o_A*
Probab=25.65 E-value=1.3e+02 Score=30.03 Aligned_cols=196 Identities=9% Similarity=0.074 Sum_probs=102.8
Q ss_pred hHHHHHHHHHHcCCCeEEEeec-----------CCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCC
Q 013861 158 GLVQEVAKARDVGVNSVVLFPK-----------VPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSS 226 (435)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgv-----------i~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTs 226 (435)
...+-++.+.+.|...|-|-+- ..+.-.|+.|-.--|.--++.+.|+.+|+++++--|...+....+..
T Consensus 172 ~f~~AA~~a~~AGfDgVEIh~ahGYLl~QFLsp~~N~RtD~yGGslenR~rf~~Eiv~aVr~avg~~~V~vRls~~~~~~ 251 (402)
T 2hsa_B 172 DYRRSALNAIEAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSLANRCKFITQVVQAVVSAIGADRVGVRVSPAIDHL 251 (402)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECSSCCST
T ss_pred HHHHHHHHHHHcCCCEEEECCccchHHHhccCCccCccCCccCcChhhhhHHHHHHHHHHHHHhCCCcEEEEeccccccC
Confidence 3556666778999999999752 11234677665543444567788999999987325666776654311
Q ss_pred CCcceeecCCCccccHHHHHHHHHHHHHHHHcC------CCeecCCCCC-CchHHHHHHHHHHCCCCCcee--echhhhh
Q 013861 227 DGHDGIVREDGVIMNDETVHQLCKQAVSQARAG------ADVVSPSDMM-DGRVGAIRAALDAEGFQHVSI--MSYTAKY 297 (435)
Q Consensus 227 hGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AG------ADiVAPSDMM-DGrVgAIR~aLD~~Gf~~v~I--MSYSaKy 297 (435)
|+- ...+++...+.|-...++| +|.|.-|.-+ ++ +...+. ++....
T Consensus 252 ----g~~-------~~~~~~~~~~la~~le~~G~~gg~~vd~i~v~~~~~~~-------------~~~~~~~~~~~~~~- 306 (402)
T 2hsa_B 252 ----DAM-------DSNPLSLGLAVVERLNKIQLHSGSKLAYLHVTQPRYVA-------------YGQTEAGRLGSEEE- 306 (402)
T ss_dssp ----TCC-------CSCHHHHHHHHHHHHHHHHHHHTSCCSEEEEECCCCCT-------------TTTSSSTTTTHHHH-
T ss_pred ----CCC-------CCCCHHHHHHHHHHHHhcCCccCCceEEEEEecCcccc-------------ccCCccccccCCcc-
Confidence 111 1124444555566667888 9988766422 11 000000 000000
Q ss_pred cccccccchhhhcCCCCCCCccccCCCCCCHHHHHHHHHhccccc-ccEEecccCCCcccCCCchHHHHHHHHhhCCCCe
Q 013861 298 ASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEG-ADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPI 376 (435)
Q Consensus 298 ASafYGPFRdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EG-ADilM~~~~~~~VKPal~YLDIIr~vk~~~~lPv 376 (435)
.-.|-.-+|++++ -|-.+.- . ++ .++| .++ +++| ||+|| + =.|.+..=|+++++++.. |+
T Consensus 307 ~~~~~~~vk~~~~-iPvi~~G-~--i~---~~~a-~~~---l~~g~aD~V~---i---gR~~l~dP~l~~k~~~g~--~l 367 (402)
T 2hsa_B 307 EARLMRTLRNAYQ-GTFICSG-G--YT---RELG-IEA---VAQGDADLVS---Y---GRLFISNPDLVMRIKLNA--PL 367 (402)
T ss_dssp HHHHHHHHHHHCS-SCEEEES-S--CC---HHHH-HHH---HHTTSCSEEE---E---SHHHHHCTTHHHHHHHTC--CC
T ss_pred hHHHHHHHHHHCC-CCEEEeC-C--CC---HHHH-HHH---HHCCCCceee---e---cHHHHhCchHHHHHHhCC--CC
Confidence 0112223455553 3443211 1 12 3333 222 2355 99999 1 245666668999998754 44
Q ss_pred EEEEechHHHHHHHHHHCCCCchh
Q 013861 377 AAYQVSGEYSMIKAGGALKMIDEQ 400 (435)
Q Consensus 377 aaYqVSGEYaMikaAa~~G~ide~ 400 (435)
..|.-+-=|. ....+|+.|..
T Consensus 368 ~~~~~~tfy~---~~~~~Gy~dyp 388 (402)
T 2hsa_B 368 NKYNRKTFYT---QDPVVGYTDYP 388 (402)
T ss_dssp CCCCGGGSSC---CCSSTTTTCSC
T ss_pred CCCChhhccc---CCCCCCcccCc
Confidence 4454332230 12346888874
No 479
>1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0
Probab=25.58 E-value=1.4e+02 Score=29.24 Aligned_cols=39 Identities=13% Similarity=0.094 Sum_probs=29.3
Q ss_pred cccccEEecccC-CCcccCCCchHHHHHHHHhhC--CCCeEE
Q 013861 340 SEGADILLFSVL-GSQVKPGLPYLDVIRLLRDKY--PLPIAA 378 (435)
Q Consensus 340 ~EGADilM~~~~-~~~VKPal~YLDIIr~vk~~~--~lPvaa 378 (435)
+.|+|.|..+.- |.|..-+.++++.|.++++.. ++||.+
T Consensus 244 ~~Gad~I~vs~~ggr~~~~~~~~~~~l~~v~~~~~~~ipvia 285 (370)
T 1gox_A 244 QHGAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRIPVFL 285 (370)
T ss_dssp HTTCSEEEECCGGGTSSTTCCCHHHHHHHHHHHTTTSSCEEE
T ss_pred HcCCCEEEECCCCCccCCCcccHHHHHHHHHHHhCCCCEEEE
Confidence 569999986542 344444568999999999987 689865
No 480
>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A
Probab=25.46 E-value=1.1e+02 Score=31.79 Aligned_cols=68 Identities=24% Similarity=0.281 Sum_probs=44.0
Q ss_pred ccccccEEecccCCCcccC---CCchHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhh------HHHHHHHH
Q 013861 339 ESEGADILLFSVLGSQVKP---GLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQR------VMMESLMC 409 (435)
Q Consensus 339 ~~EGADilM~~~~~~~VKP---al~YLDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G~ide~~------~v~Esl~~ 409 (435)
.++|||-|.|.-|.+.-.. -..-+++|+++++..++||-. -| |+-+.+. -++|....
T Consensus 290 ~~~Ga~~l~~~dl~~~~~~~~~~~~~~~~i~~i~~~~~ipi~v---gG-----------GIr~~~d~~~~~~~~~~~a~~ 355 (555)
T 1jvn_A 290 YQQGADEVTFLNITSFRDCPLKDTPMLEVLKQAAKTVFVPLTV---GG-----------GIKDIVDVDGTKIPALEVASL 355 (555)
T ss_dssp HHTTCSEEEEEEEC---CCCGGGCHHHHHHHHHTTTCCSCEEE---ES-----------SCSCEECTTCCEECHHHHHHH
T ss_pred HHcCCCEEEEEeCCccccccCCCchHHHHHHHHHhhCCCcEEE---eC-----------ccccchhcccccchHHHHHHH
Confidence 4579999876555543211 112589999999999999753 22 3322211 36788888
Q ss_pred HHHhcccEeeh
Q 013861 410 LRRAGADIILT 420 (435)
Q Consensus 410 ikRAGAd~IiT 420 (435)
+.++|||.|+-
T Consensus 356 ~l~aGad~V~i 366 (555)
T 1jvn_A 356 YFRSGADKVSI 366 (555)
T ss_dssp HHHHTCSEEEE
T ss_pred HHHcCCCEEEE
Confidence 99999999653
No 481
>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}
Probab=25.21 E-value=2.7e+02 Score=26.41 Aligned_cols=110 Identities=19% Similarity=0.219 Sum_probs=62.8
Q ss_pred eechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCC-CeEEEeeecccCCCCCCcc
Q 013861 152 RLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYP-DLVIYTDVALDPYSSDGHD 230 (435)
Q Consensus 152 r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~P-dl~IitDVcLc~YTshGHc 230 (435)
++.++ .+.+.++.+++.|+..+++.|. +|+...=..-=-.+.++...+... .+-||+=+
T Consensus 17 ~iD~~-~l~~lv~~li~~Gv~gi~v~Gt--------tGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGv----------- 76 (297)
T 2rfg_A 17 QVDEK-ALAGLVDWQIKHGAHGLVPVGT--------TGESPTLTEEEHKRVVALVAEQAQGRVPVIAGA----------- 76 (297)
T ss_dssp EECHH-HHHHHHHHHHHTTCSEEECSSG--------GGTGGGSCHHHHHHHHHHHHHHHTTSSCBEEEC-----------
T ss_pred CcCHH-HHHHHHHHHHHcCCCEEEECcc--------ccchhhCCHHHHHHHHHHHHHHhCCCCeEEEcc-----------
Confidence 34454 5889999999999999999886 344332211122344444444332 23333322
Q ss_pred eeecCCCccccHHHHHHHHHHHHHHHHcCCCee---cCCC---CCCchHHHHHHHHHHCCCCCceeechh
Q 013861 231 GIVREDGVIMNDETVHQLCKQAVSQARAGADVV---SPSD---MMDGRVGAIRAALDAEGFQHVSIMSYT 294 (435)
Q Consensus 231 GIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiV---APSD---MMDGrVgAIR~aLD~~Gf~~v~IMSYS 294 (435)
|...-.+|++ +++ ..+++|||.| .|.= --+|-+...++..++. +++||=|-
T Consensus 77 ------g~~~t~~ai~-la~---~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~---~lPiilYn 133 (297)
T 2rfg_A 77 ------GSNNPVEAVR-YAQ---HAQQAGADAVLCVAGYYNRPSQEGLYQHFKMVHDAI---DIPIIVYN 133 (297)
T ss_dssp ------CCSSHHHHHH-HHH---HHHHHTCSEEEECCCTTTCCCHHHHHHHHHHHHHHC---SSCEEEEE
T ss_pred ------CCCCHHHHHH-HHH---HHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhc---CCCEEEEe
Confidence 2222344443 333 3467899965 3421 1267787888877765 57898885
No 482
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=25.05 E-value=32 Score=31.94 Aligned_cols=56 Identities=9% Similarity=0.145 Sum_probs=28.4
Q ss_pred CHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhh-CCCCeEEEEechHHHHHHHH
Q 013861 327 NYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDK-YPLPIAAYQVSGEYSMIKAG 391 (435)
Q Consensus 327 N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~-~~lPvaaYqVSGEYaMikaA 391 (435)
+....+.++. +.++|+|++.. ....-.-+++.+++. .+.|+........-.+++.+
T Consensus 186 d~~~~~~~l~---~~~~dav~~~~------~~~~a~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 242 (392)
T 3lkb_A 186 DNTALLKRFE---QAGVEYVVHQN------VAGPVANILKDAKRLGLKMRHLGAHYTGGPDLIALA 242 (392)
T ss_dssp CCHHHHHHHH---HTTCCEEEEES------CHHHHHHHHHHHHHTTCCCEEEECGGGCSHHHHHHH
T ss_pred CHHHHHHHHH---hcCCCEEEEec------CcchHHHHHHHHHHcCCCceEEEecCcccHHHHHhh
Confidence 4445555544 36899988211 111224455666653 35676555333344566654
No 483
>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis}
Probab=25.04 E-value=86 Score=29.38 Aligned_cols=91 Identities=14% Similarity=0.105 Sum_probs=48.6
Q ss_pred HHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHH---HHHHHHHHHCCCeEEEeeecc---cCCCCCCcceee
Q 013861 160 VQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVP---RTIWLLKDRYPDLVIYTDVAL---DPYSSDGHDGIV 233 (435)
Q Consensus 160 ~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~---raIr~iK~~~Pdl~IitDVcL---c~YTshGHcGIv 233 (435)
.+.++.+++.|++.|.+|...++. -+.. .-..+.+..+. ++++..|+.. +-|-+.++. |||
T Consensus 82 ~~~i~~a~~~G~~~V~i~~~~S~~-h~~~-~~~~~~~e~~~~~~~~v~~a~~~G--~~V~~~l~~~~~~e~--------- 148 (295)
T 1ydn_A 82 MKGYEAAAAAHADEIAVFISASEG-FSKA-NINCTIAESIERLSPVIGAAINDG--LAIRGYVSCVVECPY--------- 148 (295)
T ss_dssp HHHHHHHHHTTCSEEEEEEESCHH-HHHH-HTSSCHHHHHHHHHHHHHHHHHTT--CEEEEEEECSSEETT---------
T ss_pred HHHHHHHHHCCCCEEEEEEecCHH-HHHH-HcCCCHHHHHHHHHHHHHHHHHcC--CeEEEEEEEEecCCc---------
Confidence 356778999999999998643210 0000 00011222333 4466666653 445555543 233
Q ss_pred cCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCC
Q 013861 234 REDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMM 269 (435)
Q Consensus 234 ~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMM 269 (435)
+.-.|.+ .+.+.+-...++|||.|+-.|+.
T Consensus 149 ---~~~~~~~---~~~~~~~~~~~~G~d~i~l~Dt~ 178 (295)
T 1ydn_A 149 ---DGPVTPQ---AVASVTEQLFSLGCHEVSLGDTI 178 (295)
T ss_dssp ---TEECCHH---HHHHHHHHHHHHTCSEEEEEETT
T ss_pred ---CCCCCHH---HHHHHHHHHHhcCCCEEEecCCC
Confidence 1122344 44444444557899999988753
No 484
>2yyu_A Orotidine 5'-phosphate decarboxylase; TIM barrel, structural genomics, NPPSFA, national project on structural and functional analyses; HET: C5P; 2.20A {Geobacillus kaustophilus} PDB: 2yyt_A*
Probab=25.01 E-value=72 Score=29.34 Aligned_cols=164 Identities=20% Similarity=0.219 Sum_probs=78.6
Q ss_pred HHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCch-HHHHHHH
Q 013861 201 RTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGR-VGAIRAA 279 (435)
Q Consensus 201 raIr~iK~~~Pdl~IitDVcLc~YTshGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMMDGr-VgAIR~a 279 (435)
..|+.||+. +..|+.|+-| + |+-.|+...++. ++++|||+|.-.--+.-. +.+..+.
T Consensus 46 ~~v~~lr~~--~~~v~lD~kl---------------~--Dip~t~~~~~~~---~~~~Gad~vTvH~~~g~~~l~~~~~~ 103 (246)
T 2yyu_A 46 AIVAFLKEQ--GHAVFLDLKL---------------H--DIPNTVKQAMKG---LARVGADLVNVHAAGGRRMMEAAIEG 103 (246)
T ss_dssp HHHHHHHHT--TCEEEEEEEE---------------C--SCHHHHHHHHHH---HHHTTCSEEEEEGGGCHHHHHHHHHH
T ss_pred HHHHHHHHC--CCeEEEEeec---------------c--cchHHHHHHHHH---HHhcCCCEEEEECCCCHHHHHHHHHH
Confidence 467888876 4567778765 1 456677764444 478999999655444322 3344444
Q ss_pred HHH---CCCCCceeechhhhhcccccccchhhhcCCCCCCCccccCCCCCCHHHHHHHHHhc-ccccccEEecccCCCcc
Q 013861 280 LDA---EGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQAD-ESEGADILLFSVLGSQV 355 (435)
Q Consensus 280 LD~---~Gf~~v~IMSYSaKyASafYGPFRdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D-~~EGADilM~~~~~~~V 355 (435)
+.+ .|-....+++ ....++. + -+.+. +.|.++ ....+.+.....+ .+-|.|-++ +
T Consensus 104 ~~~~~~~G~~~~~~la--v~~~Ts~-~--~~~l~--------~~~~~~-~~~~d~Vl~ma~~~~~~G~~g~V-------~ 162 (246)
T 2yyu_A 104 LDAGTPSGRMRPRCIA--VTQLTST-D--ERMLH--------EELWIS-RPLVETVAHYAALAKESGLDGVV-------C 162 (246)
T ss_dssp HHHHSCSSSCCCEEEE--ESSCTTC-C--HHHHH--------HTSCCC-SCHHHHHHHHHHHHHHHTCCEEE-------C
T ss_pred HHhhcccCCcCCCEEE--EEeCCCC-C--HHHHH--------HHhcCC-CCHHHHHHHHHHHHHHhCCCEEE-------e
Confidence 444 4532211221 1111111 0 00010 011111 1234444444444 556888776 2
Q ss_pred cCCCchHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEeeh
Q 013861 356 KPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILT 420 (435)
Q Consensus 356 KPal~YLDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G~ide~~~v~Esl~~ikRAGAd~IiT 420 (435)
- .++ ++++|+..+ +.. .+|.|=...- .+. .+ ++.-+.+.....+||||+|+.
T Consensus 163 ~----~~e-i~~lr~~~~-~~~-i~V~gGI~~~--g~~---~~-dq~rv~t~~~a~~aGad~iVv 214 (246)
T 2yyu_A 163 S----ANE-AAFIKERCG-ASF-LAVTPGIRFA--DDA---AH-DQVRVVTPRKARALGSDYIVI 214 (246)
T ss_dssp C----HHH-HHHHHHHHC-TTS-EEEECCCCCC--C-----------CCCCHHHHHHHTCSEEEE
T ss_pred C----HHH-HHHHHHhcC-CCC-EEEeCCcCCC--CCC---cc-cccccCCHHHHHHcCCCEEEE
Confidence 2 367 888887764 122 4676533210 000 11 112222445566899999874
No 485
>1rcu_A Conserved hypothetical protein VT76; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Thermotoga maritima} SCOP: c.129.1.1
Probab=24.90 E-value=1.3e+02 Score=27.46 Aligned_cols=125 Identities=18% Similarity=0.119 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHHHHcCCCeecCCCCCCchHH-HHHHHHHHCCCCCceeechhhhhcccccccchhhhcCCCCCCCcccc
Q 013861 243 ETVHQLCKQAVSQARAGADVVSPSDMMDGRVG-AIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTY 321 (435)
Q Consensus 243 ~Tv~~Lak~Avs~A~AGADiVAPSDMMDGrVg-AIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRdA~~Sap~fgDRktY 321 (435)
.-.+.-.+.+-..|++|..+|. ..--|-=+ +-|.+|+..| .-++|+ |+.+-. + .+.+ +
T Consensus 42 ~~~~~A~~lg~~LA~~G~~vVs--Gg~~GiM~aa~~gAl~~GG-~~iGVl------------P~e~~~--~-~~~~---~ 100 (195)
T 1rcu_A 42 ELRDICLELGRTLAKKGYLVFN--GGRDGVMELVSQGVREAGG-TVVGIL------------PDEEAG--N-PYLS---V 100 (195)
T ss_dssp GGHHHHHHHHHHHHHTTCEEEE--CCSSHHHHHHHHHHHHTTC-CEEEEE------------STTCCC--C-TTCS---E
T ss_pred HHHHHHHHHHHHHHHCCCEEEe--CCHHHHHHHHHHHHHHcCC-cEEEEe------------CCcccC--C-CCcc---e
Confidence 5556666777888999999998 55555444 4567776666 578887 332111 1 1222 1
Q ss_pred CCCC-CCHHHHHHHHHhcccccccEEecccCCCcccCCCc-hHHHHHHHHhhCCCCeEEEEechHHH-HHHHHHHCC-CC
Q 013861 322 QMNP-ANYREALVEAQADESEGADILLFSVLGSQVKPGLP-YLDVIRLLRDKYPLPIAAYQVSGEYS-MIKAGGALK-MI 397 (435)
Q Consensus 322 Qmdp-~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~-YLDIIr~vk~~~~lPvaaYqVSGEYa-MikaAa~~G-~i 397 (435)
-+.. .+- ..|.. =+.+=||.++ |=||.. -||=+.++-+ .+.||++++++|-|. .++...+.| ++
T Consensus 101 ~~~~~~~f--~~Rk~--~m~~~sda~I-------vlpGG~GTL~E~~eal~-~~kPV~lln~~g~w~~~l~~~~~~G~fi 168 (195)
T 1rcu_A 101 AVKTGLDF--QMRSF--VLLRNADVVV-------SIGGEIGTAIEILGAYA-LGKPVILLRGTGGWTDRISQVLIDGKYL 168 (195)
T ss_dssp EEECCCCH--HHHHH--HHHTTCSEEE-------EESCCHHHHHHHHHHHH-TTCCEEEETTSCHHHHHGGGGCBTTTBS
T ss_pred eeecCCCH--HHHHH--HHHHhCCEEE-------EecCCCcHHHHHHHHHh-cCCCEEEECCCCccHHHHHHHHHcCCcC
Confidence 1111 111 12222 2255689999 888872 3666665544 589999999999997 555555556 55
Q ss_pred chh
Q 013861 398 DEQ 400 (435)
Q Consensus 398 de~ 400 (435)
+.+
T Consensus 169 ~~~ 171 (195)
T 1rcu_A 169 DNR 171 (195)
T ss_dssp STT
T ss_pred CHH
Confidence 543
No 486
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=24.89 E-value=99 Score=22.39 Aligned_cols=50 Identities=16% Similarity=0.173 Sum_probs=33.7
Q ss_pred CHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhh---CCCCeEEEEech
Q 013861 327 NYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDK---YPLPIAAYQVSG 383 (435)
Q Consensus 327 N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~---~~lPvaaYqVSG 383 (435)
|..+++..... +..|+++... --|...-+++++.+++. ..+|+..+.-++
T Consensus 33 ~~~~~~~~l~~---~~~dlii~d~----~~~~~~~~~~~~~l~~~~~~~~~~ii~~~~~~ 85 (119)
T 2j48_A 33 DGSTALDQLDL---LQPIVILMAW----PPPDQSCLLLLQHLREHQADPHPPLVLFLGEP 85 (119)
T ss_dssp CHHHHHHHHHH---HCCSEEEEEC----STTCCTHHHHHHHHHHTCCCSSCCCEEEESSC
T ss_pred CHHHHHHHHHh---cCCCEEEEec----CCCCCCHHHHHHHHHhccccCCCCEEEEeCCC
Confidence 56666665543 3579888221 12667789999999987 469998875533
No 487
>3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A*
Probab=24.88 E-value=1.1e+02 Score=28.57 Aligned_cols=50 Identities=18% Similarity=0.241 Sum_probs=35.7
Q ss_pred CceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHH
Q 013861 149 GCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDR 209 (435)
Q Consensus 149 Gv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~ 209 (435)
.-|+++.+ .++++++++.+.|++.|.+.|-- ++ .++ ..-+.+.++.||+.
T Consensus 80 ~~~~ls~e-ei~~~i~~~~~~g~~~i~~~gGe-----~p----~~~-~~~~~~li~~i~~~ 129 (348)
T 3iix_A 80 KRYRMTPE-EIVERARLAVQFGAKTIVLQSGE-----DP----YXM-PDVISDIVKEIKKM 129 (348)
T ss_dssp CCCBCCHH-HHHHHHHHHHHTTCSEEEEEESC-----CG----GGT-THHHHHHHHHHHTT
T ss_pred CceeCCHH-HHHHHHHHHHHCCCCEEEEEeCC-----CC----Ccc-HHHHHHHHHHHHhc
Confidence 44567886 69999999999999999887631 11 122 13466788888876
No 488
>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*
Probab=24.83 E-value=1.5e+02 Score=25.91 Aligned_cols=88 Identities=16% Similarity=0.053 Sum_probs=46.0
Q ss_pred CHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhCCCCeEE--EEechHHHHHHHHHHCCC--CchhhH
Q 013861 327 NYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAA--YQVSGEYSMIKAGGALKM--IDEQRV 402 (435)
Q Consensus 327 N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~~lPvaa--YqVSGEYaMikaAa~~G~--ide~~~ 402 (435)
+..+.+..++.=++.|+|+|-+.. +....+..|+++++.+++|+.. -.+.-.+ .++.|.+.|. +-....
T Consensus 17 d~~~~~~~~~~~~~~G~~~i~l~~------~~~~~~~~i~~i~~~~~~~l~vg~g~~~~~~-~i~~a~~~Gad~V~~~~~ 89 (212)
T 2v82_A 17 TPDEALAHVGAVIDAGFDAVEIPL------NSPQWEQSIPAIVDAYGDKALIGAGTVLKPE-QVDALARMGCQLIVTPNI 89 (212)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEEET------TSTTHHHHHHHHHHHHTTTSEEEEECCCSHH-HHHHHHHTTCCEEECSSC
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeC------CChhHHHHHHHHHHhCCCCeEEEeccccCHH-HHHHHHHcCCCEEEeCCC
Confidence 344444444433467999997221 2234578889998888777543 1111122 3555555552 000111
Q ss_pred HHHHHHHHHHhcccEeehh
Q 013861 403 MMESLMCLRRAGADIILTY 421 (435)
Q Consensus 403 v~Esl~~ikRAGAd~IiTY 421 (435)
-.+.+..+++.|.++++.-
T Consensus 90 ~~~~~~~~~~~g~~~~~g~ 108 (212)
T 2v82_A 90 HSEVIRRAVGYGMTVCPGC 108 (212)
T ss_dssp CHHHHHHHHHTTCEEECEE
T ss_pred CHHHHHHHHHcCCCEEeec
Confidence 1344455667777766653
No 489
>3dhu_A Alpha-amylase; structural genomics, hydrolase, glycosidase, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum}
Probab=24.81 E-value=1.3e+02 Score=29.51 Aligned_cols=123 Identities=14% Similarity=0.120 Sum_probs=71.3
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccC--cCcCCCCC------------HHHHHHHHHHHCCCeEEEeeecccC
Q 013861 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGD--EAYNDNGL------------VPRTIWLLKDRYPDLVIYTDVALDP 223 (435)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs--~A~~~~g~------------v~raIr~iK~~~Pdl~IitDVcLc~ 223 (435)
++.+.+..+.++|+++|-|=|+.+....+..|. +.|++-.. +.+.|+.++++ .+-||.|+-+-+
T Consensus 31 ~i~~~l~yl~~lG~~~i~l~Pi~~~~~~~~~~~~~~gY~~~dy~~i~~~~Gt~~~~~~lv~~~h~~--Gi~vi~D~V~NH 108 (449)
T 3dhu_A 31 GVTADLQRIKDLGTDILWLLPINPIGEVNRKGTLGSPYAIKDYRGINPEYGTLADFKALTDRAHEL--GMKVMLDIVYNH 108 (449)
T ss_dssp HHHTTHHHHHHHTCSEEEECCCSCBCSTTCCTTTCCTTSBSCTTSCCGGGCCHHHHHHHHHHHHHT--TCEEEEEECCSE
T ss_pred HHHHhHHHHHHcCCCEEEECCcccccccCCCCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHC--CCEEEEEEccCc
Confidence 688899999999999999988654322222222 23444333 23455555554 799999998754
Q ss_pred CCCCCc-----ceee--cCCC---------------ccccHHHHHHHHHHHHHHHHcCCCee---cCCCCCCchHHHHHH
Q 013861 224 YSSDGH-----DGIV--REDG---------------VIMNDETVHQLCKQAVSQARAGADVV---SPSDMMDGRVGAIRA 278 (435)
Q Consensus 224 YTshGH-----cGIv--~e~g---------------~IdND~Tv~~Lak~Avs~A~AGADiV---APSDMMDGrVgAIR~ 278 (435)
-+...+ .+-. +++| .-.|.+..+.+.+...-..+. +|-+ +..-|-..-+..+|+
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~dLn~~np~Vr~~l~~~l~~w~~~-vDGfRlDaa~~~~~~f~~~~~~ 187 (449)
T 3dhu_A 109 TSPDSVLATEHPEWFYHDADGQLTNKVGDWSDVKDLDYGHHELWQYQIDTLLYWSQF-VDGYRCDVAPLVPLDFWLEARK 187 (449)
T ss_dssp ECTTSHHHHHCGGGBCBCTTSCBCCSSTTCTTCEEBCTTSHHHHHHHHHHHHHHTTT-CSEEEETTGGGSCHHHHHHHHH
T ss_pred CcCccchhhcCccceEECCCCCcCCCCCCCCCCCccCCCCHHHHHHHHHHHHHHHHh-CCEEEEEChhhCCHHHHHHHHH
Confidence 332110 0000 1111 124667677777777666666 5533 223333355677888
Q ss_pred HHHHC
Q 013861 279 ALDAE 283 (435)
Q Consensus 279 aLD~~ 283 (435)
++.+.
T Consensus 188 ~~~~~ 192 (449)
T 3dhu_A 188 QVNAK 192 (449)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 88664
No 490
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=24.79 E-value=1e+02 Score=25.81 Aligned_cols=65 Identities=17% Similarity=0.218 Sum_probs=44.8
Q ss_pred CHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhC-CCCeEEEEechHHHHHHHHHHCCCCc
Q 013861 327 NYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMID 398 (435)
Q Consensus 327 N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~-~lPvaaYqVSGEYaMikaAa~~G~id 398 (435)
|..||+.... +...|+|+... --|.+.-+++++.+++.. .+|+...--.++...+..|.+.|..|
T Consensus 36 ~~~~al~~~~---~~~~dlvl~D~----~lp~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~a~~~Ga~~ 101 (208)
T 1yio_A 36 CASTFLEHRR---PEQHGCLVLDM----RMPGMSGIELQEQLTAISDGIPIVFITAHGDIPMTVRAMKAGAIE 101 (208)
T ss_dssp SHHHHHHHCC---TTSCEEEEEES----CCSSSCHHHHHHHHHHTTCCCCEEEEESCTTSCCCHHHHHTTEEE
T ss_pred CHHHHHHhhh---ccCCCEEEEeC----CCCCCCHHHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHHCCCcE
Confidence 4556665432 24578887211 127777899999999876 69999988777766777777777654
No 491
>1tv5_A Dhodehase, dihydroorotate dehydrogenase homolog, mitochondri, dihydroorotate; alpha-beta barrel, TIM barrel, oxidoreductase; HET: A26 FMN ORO N8E; 2.40A {Plasmodium falciparum} SCOP: c.1.4.1
Probab=24.60 E-value=2.8e+02 Score=28.26 Aligned_cols=44 Identities=20% Similarity=0.279 Sum_probs=29.7
Q ss_pred CHHHHHHHHHhcccccccEEecccCCCcccCCCc-------hHHHHHHHHhh
Q 013861 327 NYREALVEAQADESEGADILLFSVLGSQVKPGLP-------YLDVIRLLRDK 371 (435)
Q Consensus 327 N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~-------YLDIIr~vk~~ 371 (435)
+.-+-+.++..-+.++||+|-.. +++...|++. ..+||+.+|+.
T Consensus 194 ~~~~dy~~~a~~l~~~aD~ieiN-iscPnt~Glr~lq~~~~l~~il~~v~~~ 244 (443)
T 1tv5_A 194 NIVDDLKYCINKIGRYADYIAIN-VSSPNTPGLRDNQEAGKLKNIILSVKEE 244 (443)
T ss_dssp CHHHHHHHHHHHHGGGCSEEEEE-CCCTTSTTGGGGGSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCEEEEe-ccCCCCcccccccCHHHHHHHHHHHHHH
Confidence 44555666666777899999855 3666667754 24678787753
No 492
>1vcv_A Probable deoxyribose-phosphate aldolase; DERA, hyperthermophIle, archaea, lyase; 2.00A {Pyrobaculum aerophilum} SCOP: c.1.10.1
Probab=24.57 E-value=3.4e+02 Score=25.32 Aligned_cols=103 Identities=17% Similarity=0.190 Sum_probs=64.9
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCC--eEEEeeecccCCCCCCcceeecC
Q 013861 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPD--LVIYTDVALDPYSSDGHDGIVRE 235 (435)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pd--l~IitDVcLc~YTshGHcGIv~e 235 (435)
.-+.|+++ ++.|-..|-.--.+. ..|+ .....+.+=|+.+++..++ |=||- |
T Consensus 68 ~k~~E~~~-i~~GAdEID~Vinig-~~~~-------g~~~~v~~ei~~v~~a~~~~~lKvIl-----------------E 121 (226)
T 1vcv_A 68 SRIALVSR-LAEVADEIDVVAPIG-LVKS-------RRWAEVRRDLISVVGAAGGRVVKVIT-----------------E 121 (226)
T ss_dssp HHHHHHHH-HTTTCSEEEEECCHH-HHHT-------TCHHHHHHHHHHHHHHTTTSEEEEEC-----------------C
T ss_pred HHHHHHHH-HHCCCCEEEEecchh-hhcC-------CCHHHHHHHHHHHHHHHcCCCceEEE-----------------e
Confidence 36789999 999999987632211 1222 1224567788888887543 12222 4
Q ss_pred CCccccHHHHHHHHHHHHHHHHcCCCeecCCC-CC----------Cc-----hHHHHHHHHHHCCCCCceee
Q 013861 236 DGVIMNDETVHQLCKQAVSQARAGADVVSPSD-MM----------DG-----RVGAIRAALDAEGFQHVSIM 291 (435)
Q Consensus 236 ~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSD-MM----------DG-----rVgAIR~aLD~~Gf~~v~IM 291 (435)
.++.. |+-+...|+.|. ++|||+|=.|- -- -| .|..+|+..++.| .+++|-
T Consensus 122 t~~Lt-~eei~~a~~ia~---eaGADfVKTSTGf~~~~~~~~~~~~~gAt~~dv~lm~~~i~~~g-~~v~vK 188 (226)
T 1vcv_A 122 EPYLR-DEERYTLYDIIA---EAGAHFIKSSTGFAEEAYAARQGNPVHSTPERAAAIARYIKEKG-YRLGVK 188 (226)
T ss_dssp GGGCC-HHHHHHHHHHHH---HHTCSEEECCCSCCCHHHHHHTTCCSSCCHHHHHHHHHHHHHHT-CCCEEE
T ss_pred ccCCC-HHHHHHHHHHHH---HcCCCEEEeCCCCCccccccccCCCCCCCHHHHHHHHHHHHHhC-CCceEE
Confidence 55554 666777777765 79999999983 22 25 6777777766555 345553
No 493
>2r14_A Morphinone reductase; H-tunnelling, flavoprotein, NADH, hydride transfer, oxidoreductase; HET: FMN TXD; 1.40A {Pseudomonas putida} PDB: 3gx9_A* 1gwj_A*
Probab=24.55 E-value=1e+02 Score=30.41 Aligned_cols=111 Identities=17% Similarity=0.098 Sum_probs=61.0
Q ss_pred cHHHHHHHHHHHHHHHHcCCCeec--------------CC--CCCC-------ch-------HHHHHHHHHHCCCCCcee
Q 013861 241 NDETVHQLCKQAVSQARAGADVVS--------------PS--DMMD-------GR-------VGAIRAALDAEGFQHVSI 290 (435)
Q Consensus 241 ND~Tv~~Lak~Avs~A~AGADiVA--------------PS--DMMD-------Gr-------VgAIR~aLD~~Gf~~v~I 290 (435)
-+++++..++.|....+||+|.|= |. ---| .| |.+||+++... .|.
T Consensus 161 I~~~i~~f~~aA~~a~~aGfDgVEIh~a~GYLl~QFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr~avg~~---~v~- 236 (377)
T 2r14_A 161 IPGIVEDYRQAAQRAKRAGFDMVEVHAANACLPNQFLATGTNRRTDQYGGSIENRARFPLEVVDAVAEVFGPE---RVG- 236 (377)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSEEEEEECTTCHHHHHHSTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGG---GEE-
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEcCcccchHHhccCCccccCCCccCcchhhchHHHHHHHHHHHHHcCCC---cEE-
Confidence 467888899888888899999874 43 1112 23 66777766321 222
Q ss_pred echhhhhccc-ccccchhhhcCCCCCCCccccCCCCC-CHHHHHHHHHhcccccccEEecccCC-CcccCCCchHHHHHH
Q 013861 291 MSYTAKYASS-FYGPFREALDSNPRFGDKKTYQMNPA-NYREALVEAQADESEGADILLFSVLG-SQVKPGLPYLDVIRL 367 (435)
Q Consensus 291 MSYSaKyASa-fYGPFRdA~~Sap~fgDRktYQmdp~-N~~EAlre~~~D~~EGADilM~~~~~-~~VKPal~YLDIIr~ 367 (435)
.|.... ++. + |+-. +..+++.-+..=.+.|+|+|-++.-. .+-+|. ..++.++.
T Consensus 237 ----vrls~~~~~~---~---------------~~~~~~~~~~~~la~~le~~Gvd~i~v~~~~~~~~~~~-~~~~~~~~ 293 (377)
T 2r14_A 237 ----IRLTPFLELF---G---------------LTDDEPEAMAFYLAGELDRRGLAYLHFNEPDWIGGDIT-YPEGFREQ 293 (377)
T ss_dssp ----EEECTTCCCT---T---------------CCCSCHHHHHHHHHHHHHHTTCSEEEEECCC------C-CCTTHHHH
T ss_pred ----EEeccccccC---C---------------CCCCCCHHHHHHHHHHHHHcCCCEEEEeCCcccCCCCc-chHHHHHH
Confidence 233321 110 0 0001 22343333333235799999844311 111222 35789999
Q ss_pred HHhhCCCCeEE
Q 013861 368 LRDKYPLPIAA 378 (435)
Q Consensus 368 vk~~~~lPvaa 378 (435)
+|+.+++||.+
T Consensus 294 ik~~~~iPvi~ 304 (377)
T 2r14_A 294 MRQRFKGGLIY 304 (377)
T ss_dssp HHHHCCSEEEE
T ss_pred HHHHCCCCEEE
Confidence 99999999986
No 494
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Probab=24.52 E-value=2.4e+02 Score=31.16 Aligned_cols=64 Identities=20% Similarity=0.290 Sum_probs=43.6
Q ss_pred cccccEEecccCCCcccCC------------CchHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHH
Q 013861 340 SEGADILLFSVLGSQVKPG------------LPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESL 407 (435)
Q Consensus 340 ~EGADilM~~~~~~~VKPa------------l~YLDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G~ide~~~v~Esl 407 (435)
+.|+|+|.+.+ |+-..+. -...+||+.+|+..++||.+=- +. ++.| +.|..
T Consensus 659 ~~g~d~iein~-~~P~~~~~~~~G~~~~~~~~~~~~iv~~v~~~~~~Pv~vK~-~~-----------~~~~----~~~~a 721 (1025)
T 1gte_A 659 ASGADALELNL-SCPHGMGERGMGLACGQDPELVRNICRWVRQAVQIPFFAKL-TP-----------NVTD----IVSIA 721 (1025)
T ss_dssp HTTCSEEEEEC-CCBCCCC-----SBGGGCHHHHHHHHHHHHHHCSSCEEEEE-CS-----------CSSC----HHHHH
T ss_pred hcCCCEEEEEC-CCCCCCCCCCcccccccCHHHHHHHHHHHHHhhCCceEEEe-CC-----------ChHH----HHHHH
Confidence 58999999543 3322221 1237899999999999998743 22 2222 56677
Q ss_pred HHHHHhcccEeeh
Q 013861 408 MCLRRAGADIILT 420 (435)
Q Consensus 408 ~~ikRAGAd~IiT 420 (435)
..+.++|+|.|+.
T Consensus 722 ~~~~~~G~d~i~v 734 (1025)
T 1gte_A 722 RAAKEGGADGVTA 734 (1025)
T ss_dssp HHHHHHTCSEEEE
T ss_pred HHHHHcCCCEEEE
Confidence 7888999999876
No 495
>1dbt_A Orotidine 5'-phosphate decarboxylase; UMP, TIM barrel, lyase; HET: U5P; 2.40A {Bacillus subtilis} SCOP: c.1.2.3
Probab=24.50 E-value=53 Score=30.05 Aligned_cols=40 Identities=18% Similarity=0.273 Sum_probs=25.8
Q ss_pred CCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCch-----HHHHHHHHhh
Q 013861 322 QMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPY-----LDVIRLLRDK 371 (435)
Q Consensus 322 Qmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~Y-----LDIIr~vk~~ 371 (435)
-+|+.|.+|+++.++. ....+| + +|+++.+ .++|+.+|+.
T Consensus 9 alD~~~l~~~~~~~~~-~~~~v~--~-------~Kv~~d~~~~~G~~~v~~l~~~ 53 (239)
T 1dbt_A 9 ALDFASAEETLAFLAP-FQQEPL--F-------VKVGMELFYQEGPSIVKQLKER 53 (239)
T ss_dssp ECCCSSHHHHHHHTGG-GTTSCC--E-------EEECHHHHHHHTHHHHHHHHHT
T ss_pred EeCCCCHHHHHHHHHH-hcccCc--E-------EEECHHHHHHhCHHHHHHHHHC
Confidence 4688899998876643 222234 4 5666544 5678888876
No 496
>3hjz_A Transaldolase B; parachlorococcus, marine, cyanobacteria; HET: MSE; 1.90A {Prochlorococcus marinus str}
Probab=24.42 E-value=30 Score=34.51 Aligned_cols=18 Identities=39% Similarity=0.379 Sum_probs=16.2
Q ss_pred HHHHHHHHHHcCCCeecC
Q 013861 248 LCKQAVSQARAGADVVSP 265 (435)
Q Consensus 248 Lak~Avs~A~AGADiVAP 265 (435)
-..||+.-|+|||.+|+|
T Consensus 164 S~~Qa~~aa~AGa~~ISP 181 (334)
T 3hjz_A 164 NFCQAVTCANANITLISP 181 (334)
T ss_dssp SHHHHHHHHHTTCSEECC
T ss_pred CHHHHHHHHHcCCcEEEe
Confidence 357899999999999999
No 497
>3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans}
Probab=24.40 E-value=86 Score=31.21 Aligned_cols=44 Identities=16% Similarity=0.277 Sum_probs=31.3
Q ss_pred chHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEeeh
Q 013861 360 PYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILT 420 (435)
Q Consensus 360 ~YLDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G~ide~~~v~Esl~~ikRAGAd~IiT 420 (435)
.++|.|+.+|+.+++||.+=.| | .| +. .|....+.++|||.|.-
T Consensus 193 ~~~~~I~~l~~~~~~PVivK~v-g----------~g-~s-----~e~A~~l~~aGad~I~V 236 (365)
T 3sr7_A 193 SWKKHLSDYAKKLQLPFILKEV-G----------FG-MD-----VKTIQTAIDLGVKTVDI 236 (365)
T ss_dssp HHHHHHHHHHHHCCSCEEEEEC-S----------SC-CC-----HHHHHHHHHHTCCEEEC
T ss_pred HHHHHHHHHHHhhCCCEEEEEC-C----------CC-CC-----HHHHHHHHHcCCCEEEE
Confidence 3789999999999999998765 1 11 11 23455667889998863
No 498
>3lrk_A Alpha-galactosidase 1; tetramer, GH27, glycoprotein, glycosida hydrolase; HET: NAG BTB; 1.95A {Saccharomyces cerevisiae} PDB: 3lrl_A* 3lrm_A*
Probab=24.34 E-value=2.7e+02 Score=29.01 Aligned_cols=108 Identities=21% Similarity=0.249 Sum_probs=69.3
Q ss_pred hHHHHHHHHHHc-----CCCeEEEeecCCCC---CCCcccCcCcCC----CCCHHHHHHHHHHHCCCeEEEeeecccCCC
Q 013861 158 GLVQEVAKARDV-----GVNSVVLFPKVPDA---LKSPTGDEAYND----NGLVPRTIWLLKDRYPDLVIYTDVALDPYS 225 (435)
Q Consensus 158 ~l~~~v~~~~~~-----GI~sv~LFgvi~~~---~Kd~~Gs~A~~~----~g~v~raIr~iK~~~Pdl~IitDVcLc~YT 225 (435)
.+++.++.+++. |++-|+ |++. .+|..|.--.|+ +| +..-+..|+++-=.+.|..|.- ++|
T Consensus 48 ~i~~~Ad~~~~~Gl~~~Gyeyvv----IDDGW~~~rd~~G~~~~d~~kFP~G-lk~Lad~ih~~GlKfGIw~~pG--~~t 120 (479)
T 3lrk_A 48 LLLDTADRISDLGLKDMGYKYII----LDDCWSSGRDSDGFLVADEQKFPNG-MGHVADHLHNNSFLFGMYSSAG--EYT 120 (479)
T ss_dssp HHHHHHHHHHHTTCGGGTCCEEE----CCSSCEEEECTTSCEEECTTTCTTC-HHHHHHHHHHTTCEEEEEEESS--SBC
T ss_pred HHHHHHHHHHhcCccccCceEEE----ECCccccccCCCCCEecChhhcCCC-HHHHHHHHHHCCCeeEEEecCc--ccc
Confidence 477777778874 555544 3443 245667655554 34 3456677888877788888873 233
Q ss_pred CCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCC------------CchHHHHHHHHHHCCC
Q 013861 226 SDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMM------------DGRVGAIRAALDAEGF 285 (435)
Q Consensus 226 shGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADiVAPSDMM------------DGrVgAIR~aLD~~Gf 285 (435)
-.||-|.+ |..+.| |-.+|+-|.|.|== ||+ .-|..++++||.+.|-
T Consensus 121 C~~~pGsl---~~~~~d---------a~~fa~WGVDylK~-D~c~~~~~~~~~~~~~~~y~~m~~AL~~tGR 179 (479)
T 3lrk_A 121 CAGYPGSL---GREEED---------AQFFANNRVDYLKY-DNCYNKGQFGTPEISYHRYKAMSDALNKTGR 179 (479)
T ss_dssp TTSSBCCT---TCHHHH---------HHHHHHTTCCEEEE-ECTTCTTCCSSHHHHHHHHHHHHHHHHHHCS
T ss_pred ccCCCchh---HHHHHH---------HHHHHHhCCcEEEE-ccCCCccccCCcchhHHHHHHHHHHHHHhCC
Confidence 34666655 333333 56799999998741 222 1478999999999983
No 499
>1v9s_A Uracil phosphoribosyltransferase; pyrimidine salvage, oligomerization, structural genomics, RI structural genomics/proteomics initiative; 2.10A {Thermus thermophilus} SCOP: c.61.1.1
Probab=24.32 E-value=99 Score=28.46 Aligned_cols=48 Identities=15% Similarity=0.255 Sum_probs=38.0
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccC
Q 013861 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDP 223 (435)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~ 223 (435)
.+..-++.+.+.|.++|.+.-.|- -+.+++.|.+.+||+.|+|+. +|+
T Consensus 138 T~~~ai~~L~~~G~~~I~~~~lv~-----------------~~~g~~~l~~~~p~v~I~t~~-iD~ 185 (208)
T 1v9s_A 138 SASLALSLLKERGATGVKLMAILA-----------------APEGLERIAKDHPDTEVVVAA-IDE 185 (208)
T ss_dssp HHHHHHHHHHHTTCCSCEEEEEEE-----------------CHHHHHHHHHHCTTCEEEEEE-ECS
T ss_pred HHHHHHHHHHHcCCCEEEEEEEEe-----------------CHHHHHHHHHHCCCcEEEEEe-ecC
Confidence 588899999999999988865432 146899999999999999874 444
No 500
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=24.07 E-value=57 Score=27.48 Aligned_cols=93 Identities=17% Similarity=0.191 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHHHcCCCeecCCCCCCchHH---HHHHHHHHCCCCCceeechhhhhcccccccchhhhcCCCCCCCc
Q 013861 242 DETVHQLCKQAVSQARAGADVVSPSDMMDGRVG---AIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDK 318 (435)
Q Consensus 242 D~Tv~~Lak~Avs~A~AGADiVAPSDMMDGrVg---AIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRdA~~Sap~fgDR 318 (435)
+.+.+.+.+.|..+ ++|+|+-|.+|.-... .+.+.|.++|..++.||- +-+|-.
T Consensus 40 ~~p~e~~v~~a~~~---~~d~v~lS~~~~~~~~~~~~~i~~l~~~g~~~i~v~v-----------------GG~~~~--- 96 (137)
T 1ccw_A 40 LSPQELFIKAAIET---KADAILVSSLYGQGEIDCKGLRQKCDEAGLEGILLYV-----------------GGNIVV--- 96 (137)
T ss_dssp EECHHHHHHHHHHH---TCSEEEEEECSSTHHHHHTTHHHHHHHTTCTTCEEEE-----------------EESCSS---
T ss_pred CCCHHHHHHHHHhc---CCCEEEEEecCcCcHHHHHHHHHHHHhcCCCCCEEEE-----------------ECCCcC---
Confidence 56777777776654 9999999999986655 456678888887777652 111111
Q ss_pred cccCCCCCCHHHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhCC
Q 013861 319 KTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYP 373 (435)
Q Consensus 319 ktYQmdp~N~~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~~ 373 (435)
++....+ ..+..+ +-|+|-+. .|+..-.++++.+.+...
T Consensus 97 -----~~~~~~~-~~~~~~--~~G~d~~~--------~~g~~~~~~~~~l~~~~~ 135 (137)
T 1ccw_A 97 -----GKQHWPD-VEKRFK--DMGYDRVY--------APGTPPEVGIADLKKDLN 135 (137)
T ss_dssp -----SSCCHHH-HHHHHH--HTTCSEEC--------CTTCCHHHHHHHHHHHHT
T ss_pred -----chHhhhh-hHHHHH--HCCCCEEE--------CCCCCHHHHHHHHHHHhC
Confidence 1111211 111111 45888776 788888888888876543
Done!