RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= 013861
         (435 letters)



>3obk_A Delta-aminolevulinic acid dehydratase; ssgcid, structural genomics,
           seattle structural genomics CEN infectious disease,
           lyase; HET: PBG; 2.50A {Toxoplasma gondii ME49}
          Length = 356

 Score =  578 bits (1492), Expect = 0.0
 Identities = 185/354 (52%), Positives = 245/354 (69%), Gaps = 10/354 (2%)

Query: 84  VPPKPAAPAGTPVVPSLPLSRRPRRNRKSPAMRASFQETNLSPANFVYPLFIHEGEEDTP 143
           + P+            LP+  RPRRNRK+ A+R   QE  + P++ +YPLF+H+ E   P
Sbjct: 1   MTPRGPLDNNNYGEVWLPIQARPRRNRKNRAVRQLVQENLVKPSSLIYPLFVHDEETSVP 60

Query: 144 IGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTI 203
           I +MPG  RL     L++EV +AR  G+ + +LFPKV D LKS   +E+YN +GL+PR I
Sbjct: 61  IPSMPGQSRLSMED-LLKEVGEARSYGIKAFMLFPKVDDELKSVMAEESYNPDGLLPRAI 119

Query: 204 WLLKDRYPDLVIYTDVALDPYSSDGHDGIVR-EDGVIMNDETVHQLCKQAVSQARAGADV 262
             LK+ +PD+++  DVALDPYSS GHDG+V  + G I+ND TVHQLCKQA++ ARAGAD+
Sbjct: 120 MALKEAFPDVLLLADVALDPYSSMGHDGVVDEQSGKIVNDLTVHQLCKQAITLARAGADM 179

Query: 263 VSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFG-DKKTY 321
           V PSDMMDGRV AIR +LD EG    SI++Y+ KYASSFYGPFR+ALDS+   G DKKTY
Sbjct: 180 VCPSDMMDGRVSAIRESLDMEGCTDTSILAYSCKYASSFYGPFRDALDSHMVGGTDKKTY 239

Query: 322 QMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAAYQV 381
           QM+P+N REA  EA+AD SEGAD+L+       VKPGLPYLDV+  +R+K  LP+ AY V
Sbjct: 240 QMDPSNSREAEREAEADASEGADMLM-------VKPGLPYLDVLAKIREKSKLPMVAYHV 292

Query: 382 SGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTYFALQAARCLCGEKR 435
           SGEY+M+KA      I E+  ++E L   RRAGAD + TY+A +AA+ +  + +
Sbjct: 293 SGEYAMLKAAAEKGYISEKDTVLEVLKSFRRAGADAVATYYAKEAAKWMVEDMK 346


>1w1z_A Delta-aminolevulinic acid dehydratase; synthase, tetrapyrrole
           biosynthesis, ALAD, porphyrin biosynt heme biosynthesis,
           lyase; 2.6A {Prosthecochloris vibrioformis} SCOP:
           c.1.10.3 PDB: 2c1h_A*
          Length = 328

 Score =  550 bits (1421), Expect = 0.0
 Identities = 173/335 (51%), Positives = 228/335 (68%), Gaps = 12/335 (3%)

Query: 97  VPSLPLSRRPRRNRKSPAMRASFQETNLSPANFVYPLFIHEGE-EDTPIGAMPGCYRLGW 155
           +  L +  RPRR R++ A+R   QE  L+  + V+PLF+  G      + +MPG +R   
Sbjct: 4   LDLLNIVHRPRRLRRTAALRNLVQENTLTVNDLVFPLFVMPGTNAVEEVSSMPGSFRFTI 63

Query: 156 RHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVI 215
               V+E  +  D+G+  + LF  +P+  K+  G EAYNDNG++ + I  +K   P+L I
Sbjct: 64  DR-AVEECKELYDLGIQGIDLFG-IPE-QKTEDGSEAYNDNGILQQAIRAIKKAVPELCI 120

Query: 216 YTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGA 275
            TDVALDP++  GHDG+V +DG+I+NDETV  L K AVS A AGAD VSPSDMMDGR+GA
Sbjct: 121 MTDVALDPFTPFGHDGLV-KDGIILNDETVEVLQKMAVSHAEAGADFVSPSDMMDGRIGA 179

Query: 276 IRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEA 335
           IR ALD      V I+SY AKYASSFYGPFR+AL S P+FGDK TYQMNPAN  EA+ E 
Sbjct: 180 IREALDETDHSDVGILSYAAKYASSFYGPFRDALHSAPQFGDKSTYQMNPANTEEAMKEV 239

Query: 336 QADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALK 395
           + D  EGADI++       VKPGL YLD++   ++++ +P+A Y VSGEY+M+KA  A  
Sbjct: 240 ELDIVEGADIVM-------VKPGLAYLDIVWRTKERFDVPVAIYHVSGEYAMVKAAAAKG 292

Query: 396 MIDEQRVMMESLMCLRRAGADIILTYFALQAARCL 430
            IDE RVMMESL+C++RAGADII TY+A +AA+ L
Sbjct: 293 WIDEDRVMMESLLCMKRAGADIIFTYYAKEAAKKL 327


>1w5q_A Delta-aminolevulinic acid dehydratase; synthase, evolution,
           metalloenzyme, porphobilinogen synthase, protein
           engineering,; 1.4A {Pseudomonas aeruginosa} PDB: 1w5p_A*
           1w5o_A 1w5n_A 1w56_A 1w5m_A 1w54_A 1gzg_A* 1b4k_A
           2woq_A* 2c14_A* 2c16_A* 2c19_A* 2c15_A* 2c18_A* 2c13_A*
          Length = 337

 Score =  544 bits (1404), Expect = 0.0
 Identities = 148/340 (43%), Positives = 211/340 (62%), Gaps = 13/340 (3%)

Query: 94  TPVVPSLPLSRRPRRNRKSPAMRASFQETNLSPANFVYPLFIHEGEEDT-PIGAMPGCYR 152
           TP   + P   R RRNR+    R   +E  L+  + + P+F+ +G      I +MPG  R
Sbjct: 4   TPANRAYP-YTRLRRNRRDDFSRRLVRENVLTVDDLILPVFVLDGVNQRESIPSMPGVER 62

Query: 153 LGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPD 212
           L     L+ E  +   +G+ ++ LFP  P   KS    EAYN  G+  R    L++R+P+
Sbjct: 63  LSIDQ-LLIEAEEWVALGIPALALFPVTPVEKKSLDAAEAYNPEGIAQRATRALRERFPE 121

Query: 213 LVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGR 272
           L I TDV L  +++ G  GI+ +DG ++ND ++  L +QA+S A AGA VV+PSDMMDGR
Sbjct: 122 LGIITDVCLCEFTTHGQCGILDDDGYVLNDVSIDVLVRQALSHAEAGAQVVAPSDMMDGR 181

Query: 273 VGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRF--GDKKTYQMNPANYRE 330
           +GAIR AL++ G  +V +M+Y+AKYAS++YGPFR+A+ S      G++ TYQM+PAN  E
Sbjct: 182 IGAIREALESAGHTNVRVMAYSAKYASAYYGPFRDAVGSASNLGKGNRATYQMDPANSDE 241

Query: 331 ALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKA 390
           AL E  AD +EGAD+++       VKPG+PYLD++R ++D++  P   YQVSGEY+M   
Sbjct: 242 ALHEVAADLAEGADMVM-------VKPGMPYLDIVRRVKDEFRAPTFVYQVSGEYAMHMG 294

Query: 391 GGALKMIDEQRVMMESLMCLRRAGADIILTYFALQAARCL 430
                 + E  V++ESL   +RAGAD ILTYFA QAA  L
Sbjct: 295 AIQNGWLAE-SVILESLTAFKRAGADGILTYFAKQAAEQL 333


>1l6s_A Porphobilinogen synthase; dehydratase, lyase; HET: CME DSB; 1.70A
           {Escherichia coli} SCOP: c.1.10.3 PDB: 1i8j_A* 1l6y_A*
           1b4e_A
          Length = 323

 Score =  528 bits (1363), Expect = 0.0
 Identities = 157/328 (47%), Positives = 216/328 (65%), Gaps = 13/328 (3%)

Query: 102 LSRRPRRNRKSPAMRASFQETNLSPANFVYPLFIHEGEED-TPIGAMPGCYRLGWRHGLV 160
           L +RPRR RKSPA+RA F+ET LS  + V P+F+ E  +D   + AMPG  R+  +H L 
Sbjct: 3   LIQRPRRLRKSPALRAMFEETTLSLNDLVLPIFVEEEIDDYKAVEAMPGVMRIPEKH-LA 61

Query: 161 QEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVA 220
           +E+ +  + G+ SV+ F  +       TG +A+ ++GLV R   + K   P++++ +D  
Sbjct: 62  REIERIANAGIRSVMTFG-ISH-HTDETGSDAWREDGLVARMSRICKQTVPEMIVMSDTC 119

Query: 221 LDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAAL 280
              Y+S GH G++ E GV  ND T+  L KQAV  A AGAD ++PS  MDG+V AIR AL
Sbjct: 120 FCEYTSHGHCGVLCEHGV-DNDATLENLGKQAVVAAAAGADFIAPSAAMDGQVQAIRQAL 178

Query: 281 DAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADES 340
           DA GF+  +IMSY+ K+ASSFYGPFREA  S  + GD+K+YQMNP N REA+ E+  DE+
Sbjct: 179 DAAGFKDTAIMSYSTKFASSFYGPFREAAGSALK-GDRKSYQMNPMNRREAIRESLLDEA 237

Query: 341 EGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQ 400
           +GAD L+       VKP   YLD++R LR++  LPI AYQVSGEY+MIK       IDE+
Sbjct: 238 QGADCLM-------VKPAGAYLDIVRELRERTELPIGAYQVSGEYAMIKFAALAGAIDEE 290

Query: 401 RVMMESLMCLRRAGADIILTYFALQAAR 428
           +V++ESL  ++RAGAD+I +YFAL  A 
Sbjct: 291 KVVLESLGSIKRAGADLIFSYFALDLAE 318


>1pv8_A Delta-aminolevulinic acid dehydratase; porphobilinogen synthase,
           tetrapyrrole biosynthesis, reactio intermediate, lyase;
           HET: PB1; 2.20A {Homo sapiens} SCOP: c.1.10.3 PDB:
           1e51_A* 2z0i_A 2z1b_A
          Length = 330

 Score =  521 bits (1345), Expect = 0.0
 Identities = 128/334 (38%), Positives = 195/334 (58%), Gaps = 16/334 (4%)

Query: 105 RPRRNRKSPAMRA-----SFQETNLSPANFVYPLFIHEGE-EDTPIGAMPGCYRLGWRHG 158
           +P+    S  +           T L+ +N +YP+F+ +   +  PI ++PG  R G +  
Sbjct: 2   QPQSVLHSGYLHPLLRAWQTATTTLNASNLIYPIFVTDVPDDIQPITSLPGVARYGVKR- 60

Query: 159 LVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTD 218
           L + +    + G+  V++F       K   G  A ++       I LL+  +P+L++  D
Sbjct: 61  LEEMLRPLVEEGLRCVLIFGVPSRVPKDERGSAADSEESPAIEAIHLLRKTFPNLLVACD 120

Query: 219 VALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRA 278
           V L PY+S GH G++ E+G    +E+  +L + A++ A+AG  VV+PSDMMDGRV AI+ 
Sbjct: 121 VCLCPYTSHGHCGLLSENGAFRAEESRQRLAEVALAYAKAGCQVVAPSDMMDGRVEAIKE 180

Query: 279 ALDAEGFQ-HVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQA 337
           AL A G    VS+MSY+AK+AS FYGPFR+A  S+P FGD++ YQ+ P     AL     
Sbjct: 181 ALMAHGLGNRVSVMSYSAKFASCFYGPFRDAAKSSPAFGDRRCYQLPPGARGLALRAVDR 240

Query: 338 DESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYP-LPIAAYQVSGEYSMIKAGGALKM 396
           D  EGAD+L+       VKPG+PYLD++R ++DK+P LP+A Y VSGE++M+  G     
Sbjct: 241 DVREGADMLM-------VKPGMPYLDIVREVKDKHPDLPLAVYHVSGEFAMLWHGAQAGA 293

Query: 397 IDEQRVMMESLMCLRRAGADIILTYFALQAARCL 430
            D +  ++E++   RRAGADII+TY+  Q  + L
Sbjct: 294 FDLKAAVLEAMTAFRRAGADIIITYYTPQLLQWL 327


>1h7n_A 5-aminolaevulinic acid dehydratase; lyase, aldolase, TIM barrel,
           tetrapyrrole synthesis; HET: SHF; 1.6A {Saccharomyces
           cerevisiae} SCOP: c.1.10.3 PDB: 1h7p_A* 1h7r_A* 1ohl_A*
           1qml_A 1qnv_A 1w31_A* 1h7o_A* 1eb3_A* 1gjp_A* 1ylv_A*
           1aw5_A
          Length = 342

 Score =  506 bits (1305), Expect = e-180
 Identities = 117/340 (34%), Positives = 175/340 (51%), Gaps = 12/340 (3%)

Query: 95  PVVPSLPLSRRPRRNRKSPAMRASFQETNLSPANFVYPLFIHEGE-EDTPIGAMPGCYRL 153
                  +S         P +R    E  L+    ++PLFI +   + T I ++P   R+
Sbjct: 7   LETEPTEISSVLAGGYNHPLLRQWQSERQLTKNMLIFPLFISDNPDDFTEIDSLPNINRI 66

Query: 154 GWRHGLVQEVAKARDVGVNSVVLFP-KVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPD 212
           G  + L   +      G+ SV+LF   +    K P G  A +  G V + I  +++ +P+
Sbjct: 67  G-VNRLKDYLKPLVAKGLRSVILFGVPLIPGTKDPVGTAADDPAGPVIQGIKFIREYFPE 125

Query: 213 LVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGR 272
           L I  DV L  Y+S GH G++ +DG I  + +V +L   AV+ A+AGA  V+PSDM+DGR
Sbjct: 126 LYIICDVCLCEYTSHGHCGVLYDDGTINRERSVSRLAAVAVNYAKAGAHCVAPSDMIDGR 185

Query: 273 VGAIRAALDAEGFQH-VSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREA 331
           +  I+  L      H   ++SY AK++ + YGPFR+A  S P  GD+K YQ+ PA    A
Sbjct: 186 IRDIKRGLINANLAHKTFVLSYAAKFSGNLYGPFRDAACSAPSNGDRKCYQLPPAGRGLA 245

Query: 332 LVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYP-LPIAAYQVSGEYSMIKA 390
               + D SEGAD ++       VKP   YLD++R   +    LPI AY VSGEY+M+ A
Sbjct: 246 RRALERDMSEGADGII-------VKPSTFYLDIMRDASEICKDLPICAYHVSGEYAMLHA 298

Query: 391 GGALKMIDEQRVMMESLMCLRRAGADIILTYFALQAARCL 430
                ++D + +  ES     RAGA +I+TY A +    L
Sbjct: 299 AAEKGVVDLKTIAFESHQGFLRAGARLIITYLAPEFLDWL 338


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 54.5 bits (130), Expect = 5e-08
 Identities = 53/383 (13%), Positives = 104/383 (27%), Gaps = 125/383 (32%)

Query: 34  FNCVKTKT-VTTRRLVVTASKSHDGTTK------KLGISDAECEA--AVVAGNIPEAPPV 84
            +C   K  +TTR   VT   S   TT        + ++  E ++         P+  P 
Sbjct: 264 LSC---KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP- 319

Query: 85  PPKPAAPAGTPVVPSL---PLSRRPRR---------NRKSPAMRASFQETNLSPANF--V 130
                     P   S+    +               ++ +  + +S     L PA +  +
Sbjct: 320 ---REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLN--VLEPAEYRKM 374

Query: 131 Y-PLFIHEGEEDTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTG 189
           +  L +        I        L W   +  +V     V    V    K      S   
Sbjct: 375 FDRLSVF--PPSAHI--PTILLSLIWFDVIKSDV---MVV----VNKLHK-----YS--- 415

Query: 190 DEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLC 249
                          L++ +  +  I                 +     + N+  +H+  
Sbjct: 416 ---------------LVEKQPKESTISI-----------PSIYLELKVKLENEYALHRSI 449

Query: 250 KQAVSQARA--GADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSY---TAKYASSFYGP 304
               +  +     D++ P    D              + H+    +     ++       
Sbjct: 450 VDHYNIPKTFDSDDLIPPYL--DQYF-----------YSHI---GHHLKNIEHPERMTL- 492

Query: 305 FREA-LDSNPRFGDKKTYQMNPA---------------NYREALVEAQAD-ESEGADILL 347
           FR   LD   RF ++K    + A                Y+  + +     E     IL 
Sbjct: 493 FRMVFLDF--RFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILD 550

Query: 348 FSVLGSQVKPGL---PYLDVIRL 367
           F     +++  L    Y D++R+
Sbjct: 551 FLP---KIEENLICSKYTDLLRI 570


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 47.0 bits (111), Expect = 1e-05
 Identities = 37/242 (15%), Positives = 77/242 (31%), Gaps = 76/242 (31%)

Query: 198 LVPRTIWL----LKDRY--------------------PDLVI----YTDVALDPYSSDGH 229
           LVP   +     L++++                     +LV     Y    ++P      
Sbjct: 21  LVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQF 80

Query: 230 DGIVR------EDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGA-IRAALDA 282
           D ++       E+  +  ++ +H L           A ++  +D    +    I+  + A
Sbjct: 81  DQVLNLCLTEFENCYLEGND-IHALA----------AKLLQENDTTLVKTKELIKNYITA 129

Query: 283 EGFQHVSIMSYTAKYASSFYGPFREALDSNPR----FGDKKTYQMNPANY----RE---- 330
              + ++   +  K  S+    FR   + N +    FG     Q N  +Y    R+    
Sbjct: 130 ---RIMAKRPFDKKSNSAL---FRAVGEGNAQLVAIFGG----QGNTDDYFEELRDLYQT 179

Query: 331 --ALVEAQADESEGADILLFSVLGSQVKPGLPY---LDVIRLLRDKYPLPIAAYQVSGEY 385
              LV      S      L  ++ + +     +   L+++  L +    P   Y +S   
Sbjct: 180 YHVLVGDLIKFSAE---TLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPI 236

Query: 386 SM 387
           S 
Sbjct: 237 SC 238



 Score = 40.0 bits (93), Expect = 0.002
 Identities = 55/329 (16%), Positives = 91/329 (27%), Gaps = 152/329 (46%)

Query: 23  YVGLR-----PSVTLRFNCVK-----TKTVTTRRLVVTASKSHDGTTKKLGISDAECEAA 72
           ++G+R     P+ +L  + ++      + V +  L ++             ++  + +  
Sbjct: 305 FIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSIS------------NLTQEQVQDY 352

Query: 73  VVAGN--IPEAPPV---------------PP-----------KPAAPAGTPVVPSLPLSR 104
           V   N  +P    V               PP           K  AP+G      L  SR
Sbjct: 353 VNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSG------LDQSR 406

Query: 105 RPRRNRKSPAMRASFQETNLSPANFVYPLFIHEGEEDTPIGAMPGCYRLGWRHGLVQEVA 164
            P   RK       F    L                  P+ + P  +     H       
Sbjct: 407 IPFSERK-LKFSNRF----L------------------PVAS-P--F-----H------- 428

Query: 165 KARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALD-P 223
                                S           LVP +  + KD   + V +    +  P
Sbjct: 429 ---------------------SH-----L----LVPASDLINKDLVKNNVSFNAKDIQIP 458

Query: 224 -YSS-DGHDGIVREDGVIMNDETVHQLCKQAV-----SQARA------GADVVSP----- 265
            Y + DG D  +R     +++  V  + +  V     +Q +A      G    S      
Sbjct: 459 VYDTFDGSD--LRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLT 516

Query: 266 SDMMDGR-VGAIRA-ALDAE-----GFQH 287
               DG  V  I A  LD       GF+ 
Sbjct: 517 HRNKDGTGVRVIVAGTLDINPDDDYGFKQ 545



 Score = 39.6 bits (92), Expect = 0.002
 Identities = 37/213 (17%), Positives = 62/213 (29%), Gaps = 81/213 (38%)

Query: 189  GDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQL 248
            G + Y  +    + +W   D +           D Y     D IV  + V +   T+H  
Sbjct: 1632 GMDLYKTSKAA-QDVWNRADNH---------FKDTYGFSILD-IVINNPVNL---TIHFG 1677

Query: 249  CKQAVSQA-RAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFRE 307
             ++   +  R     +    ++DG++   +  +  E  +H +  SYT      F    + 
Sbjct: 1678 GEK--GKRIRENYSAMIFETIVDGKLKTEK--IFKEINEHST--SYT------FRSE-KG 1724

Query: 308  ALDSNPRFGDKKTY--QMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVI 365
             L          T   Q  PA                  + L                  
Sbjct: 1725 LLS--------ATQFTQ--PA------------------LTLMEKA------------AF 1744

Query: 366  RLLRDKYPLPIAAYQV---S-GEYSMIKAGGAL 394
              L+ K  +P  A      S GEY+      AL
Sbjct: 1745 EDLKSKGLIPADAT-FAGHSLGEYA------AL 1770



 Score = 33.9 bits (77), Expect = 0.12
 Identities = 41/222 (18%), Positives = 68/222 (30%), Gaps = 72/222 (32%)

Query: 110  RKSPAMRA-------SFQET-NLSPANFV--YP--LFIHE-GEEDTPIGA--MPGCYRLG 154
            + S A +         F++T   S  + V   P  L IH  GE+   I        +   
Sbjct: 1637 KTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFE-- 1694

Query: 155  WRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRT------------ 202
                         D  + +  +F ++ +   S T     ++ GL+  T            
Sbjct: 1695 ----------TIVDGKLKTEKIFKEINEHSTSYTF---RSEKGLLSATQFTQPALTLMEK 1741

Query: 203  -IW-LLKDR--YPDLVI--------YTDVALDPYSSDGHDGIVR-EDGVIMNDETVHQ-- 247
              +  LK +   P            Y   AL   +S     ++  E  V    E V    
Sbjct: 1742 AAFEDLKSKGLIPADATFAGHSLGEYA--AL---ASLA--DVMSIESLV----EVVFYRG 1790

Query: 248  -LCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHV 288
               + AV +   G    S   M+    G + A+   E  Q+V
Sbjct: 1791 MTMQVAVPRDELGR---SNYGMIAINPGRVAASFSQEALQYV 1829



 Score = 30.0 bits (67), Expect = 2.1
 Identities = 47/292 (16%), Positives = 88/292 (30%), Gaps = 111/292 (38%)

Query: 127 ANFVYPLFIH-----EGEEDTP---------IGAMPG------------CYRLGWRHGLV 160
           A  V+   ++     E   +TP         I + P                LG+  G +
Sbjct: 205 AEKVFTQGLNILEWLENPSNTPDKDYLLSIPI-SCPLIGVIQLAHYVVTAKLLGFTPGEL 263

Query: 161 QEVAKARDVGVNSVVLFPKVPDAL---KSPTGDEAYNDNGLVPRTIWLL-------KDRY 210
           +   K        +V       A+   ++ + +  +     V + I +L        + Y
Sbjct: 264 RSYLKGATGHSQGLVT------AVAIAETDSWESFFV---SVRKAITVLFFIGVRCYEAY 314

Query: 211 PDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETV--HQLCKQAVSQARAGADVVSPSDM 268
           P+       +L P        I+ +   + N+E V    L   ++S            + 
Sbjct: 315 PNT------SLPP-------SILEDS--LENNEGVPSPML---SIS----NL----TQEQ 348

Query: 269 MDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFY--GPFREALDSNPRFGDKKTYQMNPA 326
           +   V    + L A   + V I       A +    GP  ++L           Y +N  
Sbjct: 349 VQDYVNKTNSHLPAG--KQVEISLVNG--AKNLVVSGP-PQSL-----------YGLNLT 392

Query: 327 NYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAA 378
             R+A   +  D+S         +  S+ K         R       LP+A+
Sbjct: 393 -LRKAKAPSGLDQSR--------IPFSERKLKF----SNRF------LPVAS 425



 Score = 29.2 bits (65), Expect = 3.6
 Identities = 31/278 (11%), Positives = 64/278 (23%), Gaps = 101/278 (36%)

Query: 46   RLVVTASKSHDGTTKKLGISDAECEAAVVAGNIPEAPPVPPKPAAPAGTPVVPSLPLSRR 105
            + V   + +H       G S  +    +V  N        P         +       +R
Sbjct: 1643 QDVWNRADNH--FKDTYGFSILD----IVINN--------PVNLT-----IHFGGEKGKR 1683

Query: 106  PRRN-----RKSPAMRASFQETNLSPANFVYPLFIHEGEED----T----PIGAM----P 148
             R N      ++        E      N     +    E+     T    P  A+     
Sbjct: 1684 IRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQP--ALTLMEK 1741

Query: 149  GCYRLGWRHGLVQE---------------VAKARDVGVNSVVLFPKVPDALKSPTGDEAY 193
              +      GL+                  + A    V S+         ++        
Sbjct: 1742 AAFEDLKSKGLIPADATFAGHSLGEYAALASLA---DVMSI------ESLVE-------- 1784

Query: 194  NDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGI-VREDGVI--MNDETVHQLCK 250
                       ++  R   + +   V  D      +  I +    V    + E +  + +
Sbjct: 1785 -----------VVFYR--GMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVE 1831

Query: 251  QAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHV 288
            +     +    +V                 + E  Q+V
Sbjct: 1832 RV---GKRTGWLVEI------------VNYNVENQQYV 1854


>3go6_A Ribokinase RBSK; phosphofructokinase, carbohydrate kinase,
           transferase; HET: RIB ADP; 1.98A {Mycobacterium
           tuberculosis} PDB: 3go7_A*
          Length = 310

 Score = 32.2 bits (74), Expect = 0.30
 Identities = 15/40 (37%), Positives = 17/40 (42%), Gaps = 11/40 (27%)

Query: 251 QAVSQARAGADVVSPSDMMDGRVGA------IRAALDAEG 284
           QAV+ ARAGA V        G  G       +RA L A  
Sbjct: 62  QAVAAARAGAQVQ-----FSGAFGDDPAAAQLRAHLRANA 96


>2rbc_A Sugar kinase, AGR_C_4560P; ribokinase family, ATP-binding site,
           structura genomics, PSI-2, protein structu initiative;
           HET: MSE GOL; 1.90A {Agrobacterium tumefaciens str}
          Length = 343

 Score = 31.8 bits (73), Expect = 0.41
 Identities = 9/40 (22%), Positives = 11/40 (27%), Gaps = 11/40 (27%)

Query: 251 QAVSQARAGADVVSPSDMMDGRVGA------IRAALDAEG 284
            A +  R G         + G VG       I   L   G
Sbjct: 72  AAYAVHRMGGRAS-----LWGAVGDDETGTRILRDLSESG 106


>3ikh_A Carbohydrate kinase; transferase,kinase,SAD,ribose,D-ribose
           metabolic process,ATP ribokinase, PFKB
           family,11206L1,PSI-II,nysgxrc; HET: ATP; 1.88A
           {Klebsiella pneumoniae subsp} PDB: 3i3y_A*
          Length = 299

 Score = 31.7 bits (73), Expect = 0.42
 Identities = 8/40 (20%), Positives = 13/40 (32%), Gaps = 11/40 (27%)

Query: 251 QAVSQARAGADVVSPSDMMDGRVGA------IRAALDAEG 284
           QA+  +R G +       +    G       IR  +  E 
Sbjct: 45  QAIILSRCGIETR-----LIAATGNDSNGAWIRQQIKNEP 79


>1vm7_A Ribokinase; TM0960, structural genomics, JCSG, protein struc
           initiative, PSI, joint center for structural genomics,
           TRAN; 2.15A {Thermotoga maritima} SCOP: c.72.1.1
          Length = 311

 Score = 31.3 bits (72), Expect = 0.48
 Identities = 7/40 (17%), Positives = 12/40 (30%), Gaps = 10/40 (25%)

Query: 251 QAVSQARAGADVVSPSDMMDGRVGA------IRAALDAEG 284
           QAV+ A+ G             +G       +    +  G
Sbjct: 57  QAVTVAKIGEKGCR----FVTCIGNDDYSDLLIENYEKLG 92


>1rkd_A Ribokinase; carbohydrate kinase, ribose, nucleotide binding,
           transferase; HET: RIB ADP; 1.84A {Escherichia coli}
           SCOP: c.72.1.1 PDB: 1gqt_A* 1rka_A 1rk2_A* 1rks_A*
          Length = 309

 Score = 31.3 bits (72), Expect = 0.62
 Identities = 9/40 (22%), Positives = 15/40 (37%), Gaps = 11/40 (27%)

Query: 251 QAVSQARAGADVVSPSDMMDGRVGA------IRAALDAEG 284
           QAV+  R+GA++           G       +R  L  + 
Sbjct: 47  QAVAAGRSGANI-----AFIACTGDDSIGESVRQQLATDN 81


>3ry7_A Ribokinase; transferase; 2.15A {Staphylococcus aureus}
          Length = 304

 Score = 30.9 bits (71), Expect = 0.73
 Identities = 8/40 (20%), Positives = 12/40 (30%), Gaps = 11/40 (27%)

Query: 251 QAVSQARAGADVVSPSDMMDGRVGA------IRAALDAEG 284
           QA++ AR  AD          ++G       I        
Sbjct: 46  QAIATARMQADT-----TFITKIGTDGVADFILEDFKVAH 80


>2fv7_A Ribokinase; structural genomics, structural genomics consort
           transferase; HET: ADP; 2.10A {Homo sapiens} SCOP:
           c.72.1.1
          Length = 331

 Score = 30.6 bits (70), Expect = 0.85
 Identities = 10/40 (25%), Positives = 11/40 (27%), Gaps = 11/40 (27%)

Query: 251 QAVSQARAGADVVSPSDMMDGRVGA------IRAALDAEG 284
           Q V  AR GA        M  +VG           L    
Sbjct: 67  QCVQAARLGAMT-----SMVCKVGKDSFGNDYIENLKQND 101


>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate
           dehydrogenase...; oxidoreductase, multienzyme complex;
           HET: TPW; 2.35A {Bacillus stearothermophilus} PDB:
           3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A
          Length = 428

 Score = 30.3 bits (69), Expect = 1.4
 Identities = 8/80 (10%), Positives = 17/80 (21%)

Query: 48  VVTASKSHDGTTKKLGISDAECEAAVVAGNIPEAPPVPPKPAAPAGTPVVPSLPLSRRPR 107
            V      +GT   +G +    +A        +               V     +     
Sbjct: 55  KVLEILVPEGTVATVGQTLITLDAPGYENMTFKGQEQEEAKKEEKTETVSKEEKVDAVAP 114

Query: 108 RNRKSPAMRASFQETNLSPA 127
               + A     +     P+
Sbjct: 115 NAPAAEAEAGPNRRVIAMPS 134


>2qo3_A Eryaii erythromycin polyketide synthase modules 3; ketosynthase,
           acyltransferase, phosphopantetheine, transfera; 2.59A
           {Saccharopolyspora erythraea}
          Length = 915

 Score = 30.3 bits (69), Expect = 1.4
 Identities = 8/26 (30%), Positives = 10/26 (38%), Gaps = 1/26 (3%)

Query: 80  EAPPVPPKPAAPAGTPVVPSLPLSRR 105
           EAP    +         VP L +S R
Sbjct: 430 EAPEREHRETTAHDGRPVP-LVVSAR 454


>3b1n_A Ribokinase, putative; rossmann fold, ATP binding, Mg binding,
           nucleoside B transferase; HET: MZR ADP; 1.55A
           {Burkholderia thailandensis} PDB: 3b1o_A 3b1p_A* 3b1q_A*
           3b1r_A*
          Length = 326

 Score = 29.9 bits (68), Expect = 1.7
 Identities = 11/39 (28%), Positives = 14/39 (35%), Gaps = 10/39 (25%)

Query: 251 QAVSQARAGADVVSPSDMMDGRVGA-----IRAALDAEG 284
            A +    G D      MM G +GA         +DA G
Sbjct: 53  IAYALNLLGGDAR----MM-GTLGAVDAQPYLDRMDALG 86


>2eq5_A 228AA long hypothetical hydantoin racemase; structural genomics,
           NPPSFA, national project on P structural and functional
           analyses; 2.20A {Pyrococcus horikoshii}
          Length = 228

 Score = 29.4 bits (65), Expect = 1.8
 Identities = 31/200 (15%), Positives = 66/200 (33%), Gaps = 32/200 (16%)

Query: 194 NDNGLVPRTIWLLKDRYPDL-VIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQA 252
            D  ++     +++  +P+L V+   +   P      +            E   ++ + A
Sbjct: 18  EDKEILNLHGRIIESAFPELKVVSRCIEDQPKGIYNEETE---------REAEPKIIRLA 68

Query: 253 VSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYG--------- 303
               R G D +  S   D  V  +R  L        S +S  A       G         
Sbjct: 69  KEFEREGVDAIIISCAADPAVEKVRKLLSIPVIGAGSSVSALALAYGRRVGVLNLTEETP 128

Query: 304 -PFREALDSNPRFGDKKTY-----QMNPANYREALVEA-QADESEGADILLFSVLGSQVK 356
              R  L +N    D  +       +     R  ++ A +  + +G +++    LG    
Sbjct: 129 KVIRSILGNNLIAEDHPSGVSNTLDLLTDWGRREVINAAKRLKEKGVEVI---ALGC--- 182

Query: 357 PGLPYLDVIRLLRDKYPLPI 376
            G+  + +  +L ++  +P+
Sbjct: 183 TGMSTIGIAPVLEEEVGIPV 202


>2nwh_A AGR_C_3442P, carbohydrate kinase; structural genomics, APC6199,
           PSI-2, PR structure initiative 2; 1.86A {Agrobacterium
           tumefaciens str}
          Length = 317

 Score = 29.5 bits (67), Expect = 2.2
 Identities = 7/40 (17%), Positives = 12/40 (30%), Gaps = 11/40 (27%)

Query: 251 QAVSQARAGADVVSPSDMMDGRVG------AIRAALDAEG 284
            A + +R G +V      +    G       +  A    G
Sbjct: 45  AARNLSRLGFEV-----RIIAPRGGDVTGEVVAEAARQAG 79


>3pik_A Cation efflux system protein CUSC; beta-barrel, lipoprotein, outer
           membrane; HET: UNL; 2.30A {Escherichia coli}
          Length = 446

 Score = 29.6 bits (67), Expect = 2.3
 Identities = 7/39 (17%), Positives = 16/39 (41%), Gaps = 4/39 (10%)

Query: 72  AVVAGNIPEAPPVPPKPAAPAGTPVVPS-LP---LSRRP 106
            ++ G+  + P      +    +  +P+ L    L +RP
Sbjct: 226 QLLLGSYGKLPQAQTVNSDSLQSVKLPAGLSSQILLQRP 264


>3h49_A Ribokinase; transferase,PFKB family,sugar kinase YDJH,
           NYSGXRC,11206A,PSI2,, structural genomics, protein
           structure initiative; 1.80A {Escherichia coli k-12} PDB:
           3in1_A*
          Length = 325

 Score = 29.1 bits (66), Expect = 2.6
 Identities = 13/105 (12%), Positives = 27/105 (25%), Gaps = 17/105 (16%)

Query: 251 QAVSQARAGADVVSPSDMMDGRVGA------IRAALDAEGFQHVSIMSYTAKYASSFYGP 304
           +A   +R G         +  R+G       I      E    +  +       +S    
Sbjct: 49  EATIISRLGHRTA-----LMSRIGKDAAGQFILDHCRKENI-DIQSLKQDVSIDTSINVG 102

Query: 305 FREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFS 349
                D    F        N + ++  + +        A +L  +
Sbjct: 103 LVTE-DGERTFV----TNRNGSLWKLNIDDVDFARFSQAKLLSLA 142


>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis,
           malonyl/palmitoyl transferase, phosphopantetheine,
           transferase; HET: GVL FMN; 3.10A {Saccharomyces
           cerevisiae} PDB: 2vkz_A* 3hmj_A*
          Length = 1887

 Score = 29.6 bits (66), Expect = 2.6
 Identities = 8/39 (20%), Positives = 11/39 (28%)

Query: 65  SDAECEAAVVAGNIPEAPPVPPKPAAPAGTPVVPSLPLS 103
           + A   AA        AP      A  A    +   P+ 
Sbjct: 108 APAPTPAASAPAPAAAAPAPVAAAAPAAAAAEIADEPVK 146


>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1
           heterodimer/complex, NADPH oxidase, PB1 D
           heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
          Length = 83

 Score = 27.0 bits (59), Expect = 3.2
 Identities = 9/29 (31%), Positives = 16/29 (55%)

Query: 354 QVKPGLPYLDVIRLLRDKYPLPIAAYQVS 382
           + +PGLPY  V  ++  K  L +   ++S
Sbjct: 19  KTQPGLPYSQVRDMVSKKLELRLEHTKLS 47


>2hg4_A DEBS, 6-deoxyerythronolide B synthase; ketosynthase,
           acyltransferase, module 5, transferase; 2.73A
           {Saccharopolyspora erythraea}
          Length = 917

 Score = 29.2 bits (66), Expect = 3.3
 Identities = 10/28 (35%), Positives = 12/28 (42%), Gaps = 1/28 (3%)

Query: 78  IPEAPPVPPKPAAPAGTPVVPSLPLSRR 105
           I E  P   +P     +  VP L LS R
Sbjct: 449 IVEEAPEADEPEPAPDSGPVP-LVLSGR 475


>2h8l_A Protein disulfide-isomerase A3; thioredoxin-like fold; 2.00A {Homo
           sapiens}
          Length = 252

 Score = 28.5 bits (63), Expect = 3.7
 Identities = 11/75 (14%), Positives = 23/75 (30%), Gaps = 2/75 (2%)

Query: 157 HGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTI--WLLKDRYPDLV 214
           H  V+ +    D     ++LF       K      AY +  +    I  ++ ++ +    
Sbjct: 58  HTNVESLVNEYDDNGEGIILFRPSHLTNKFEDKTVAYTEQKMTSGKIKKFIQENIFGICP 117

Query: 215 IYTDVALDPYSSDGH 229
             T+   D       
Sbjct: 118 HMTEDNKDLIQGKDL 132


>1fpz_A Cyclin-dependent kinase inhibitor 3; alpha-beta sandwich,
           hydrolase; 2.00A {Homo sapiens} SCOP: c.45.1.1 PDB:
           1fq1_A*
          Length = 212

 Score = 28.1 bits (62), Expect = 4.5
 Identities = 12/100 (12%), Positives = 34/100 (34%), Gaps = 6/100 (6%)

Query: 105 RPRRNRKSPAMRASFQETNLSPANFVYPLFIHEGEEDTP--IGAM--PGCYRLGWRHGLV 160
           +P  + ++    +S +E        ++  ++     +    +G    PGC     R  + 
Sbjct: 2   KPPSSIQTSEFDSSDEEPIEDEQTPIHISWLSLSRVNCSQFLGLCALPGCKFKDVRRNVQ 61

Query: 161 QEVAKARDVGVNSVV--LFPKVPDALKSPTGDEAYNDNGL 198
           ++  + +  G+  +            + P   + Y   G+
Sbjct: 62  KDTEELKSCGIQDIFVFCTRGELSKYRVPNLLDLYQQCGI 101


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 27.6 bits (60), Expect = 4.8
 Identities = 8/29 (27%), Positives = 10/29 (34%), Gaps = 7/29 (24%)

Query: 296 KYASSF--YGPFREALDSNPRFGDKKTYQ 322
           K  +S   Y       DS P    K T +
Sbjct: 24  KLQASLKLYAD-----DSAPALAIKATME 47



 Score = 27.2 bits (59), Expect = 7.0
 Identities = 7/23 (30%), Positives = 13/23 (56%), Gaps = 4/23 (17%)

Query: 1  MASSV-FHAPCGAP--SIK-QLE 19
          + +S+  +A   AP  +IK  +E
Sbjct: 25 LQASLKLYADDSAPALAIKATME 47


>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP,
           signaling protein; HET: GNP; 2.00A {Thermotoga maritima}
           PDB: 3cnn_A* 3cno_A*
          Length = 262

 Score = 27.6 bits (62), Expect = 6.6
 Identities = 5/44 (11%), Positives = 10/44 (22%), Gaps = 7/44 (15%)

Query: 175 VLFPKVPD-------ALKSPTGDEAYNDNGLVPRTIWLLKDRYP 211
           +L+  +          L      E   D  +  R   +      
Sbjct: 154 ILYKNIFSEDLAAKLLLVGSLPVERIEDQRIFERAFEIFARSIG 197


>3bbo_T Ribosomal protein L21; large ribosomal subunit, spinach chloroplast
           ribosome, ribonucleoprotein particle, macromolecular
           complex; 9.40A {Spinacea oleracea}
          Length = 257

 Score = 27.7 bits (61), Expect = 7.0
 Identities = 12/90 (13%), Positives = 28/90 (31%)

Query: 79  PEAPPVPPKPAAPAGTPVVPSLPLSRRPRRNRKSPAMRASFQETNLSPANFVYPLFIHEG 138
           P + P     + P+ + +      ++R R       ++A F+E    P        +   
Sbjct: 32  PLSKPFSGVVSPPSLSRLSLLPVAAKRRRFQEIPEELKAEFEEFQRPPNQKPQLSDVLPD 91

Query: 139 EEDTPIGAMPGCYRLGWRHGLVQEVAKARD 168
           +   P    P    +  +    +     R+
Sbjct: 92  DFQAPEPGTPEYNDIINQFLPKKGPPPPRE 121


>2c4e_A Sugar kinase MJ0406; transferase, nucleoside kinase,
           hyperthermophIle, ribokinase ribokinase fold; 1.70A
           {Methanococcus jannaschii} PDB: 2c49_A
          Length = 302

 Score = 27.6 bits (62), Expect = 8.6
 Identities = 6/40 (15%), Positives = 10/40 (25%), Gaps = 11/40 (27%)

Query: 251 QAVSQARAGADVVSPSDMMDGRVGA------IRAALDAEG 284
            AV   + G +      ++   VG           L    
Sbjct: 48  TAVGIKKLGVNSE----LL-SCVGYDFKNSGYERYLKNLD 82


>2pkf_A Adenosine kinase; transferase, S genomics, TB structural genomics
           consortium, TBSGC; 1.50A {Mycobacterium tuberculosis}
           PDB: 2pkk_A* 2pkm_A* 2pkn_A*
          Length = 334

 Score = 27.7 bits (62), Expect = 9.1
 Identities = 13/46 (28%), Positives = 17/46 (36%), Gaps = 11/46 (23%)

Query: 251 QAVSQARAGADVVSPSDMMDGRVGA----IRAALDAEG--FQHVSI 290
            A +    G +V     ++ G  GA     R  L A G    HV I
Sbjct: 63  MAFAIGVLGGEVA----LV-GAAGADFADYRDWLKARGVNCDHVLI 103


>3hhd_A Fatty acid synthase; transferase, multienzyme, megasynthase, fatty
           acid synthesis, acetylation, cytoplasm, fatty acid
           biosynthesis, hydrolase; 2.15A {Homo sapiens} PDB:
           2jfk_A* 2jfd_A
          Length = 965

 Score = 27.9 bits (63), Expect = 9.1
 Identities = 9/26 (34%), Positives = 10/26 (38%), Gaps = 2/26 (7%)

Query: 80  EAPPVPPKPAAPAGTPVVPSLPLSRR 105
                PP PA  A  P +  L  S R
Sbjct: 408 PNTQPPPAPAPHATLPRL--LRASGR 431


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.318    0.135    0.400 

Gapped
Lambda     K      H
   0.267   0.0864    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,802,953
Number of extensions: 428176
Number of successful extensions: 1449
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1394
Number of HSP's successfully gapped: 67
Length of query: 435
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 339
Effective length of database: 4,021,377
Effective search space: 1363246803
Effective search space used: 1363246803
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.3 bits)