RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 013861
(435 letters)
>d1gzga_ c.1.10.3 (A:) 5-aminolaevulinate dehydratase, ALAD
(porphobilinogen synthase) {Pseudomonas aeruginosa
[TaxId: 287]}
Length = 329
Score = 357 bits (917), Expect = e-122
Identities = 150/331 (45%), Positives = 213/331 (64%), Gaps = 12/331 (3%)
Query: 103 SRRPRRNRKSPAMRASFQETNLSPANFVYPLFIHEGE-EDTPIGAMPGCYRLGWRHGLVQ 161
R RRNR+ R +E L+ + + P+F+ +G + I +MPG RL L+
Sbjct: 6 YTRLRRNRRDDFSRRLVRENVLTVDDLILPVFVLDGVNQRESIPSMPGVERLSIDQ-LLI 64
Query: 162 EVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVAL 221
E + +G+ ++ LFP P KS EAYN G+ R L++R+P+L I TDVAL
Sbjct: 65 EAEEWVALGIPALALFPVTPVEKKSLDAAEAYNPEGIAQRATRALRERFPELGIITDVAL 124
Query: 222 DPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALD 281
DP+++ G +GI+ +DG ++ND ++ L +QA+S A AGA VV+PSDMMDGR+GAIR AL+
Sbjct: 125 DPFTTHGQNGILDDDGYVLNDVSIDVLVRQALSHAEAGAQVVAPSDMMDGRIGAIREALE 184
Query: 282 AEGFQHVSIMSYTAKYASSFYGPFREALDS--NPRFGDKKTYQMNPANYREALVEAQADE 339
+ G +V +M+Y+AKYAS++YGPFR+A+ S N G+K TYQM+PAN EAL E AD
Sbjct: 185 SAGHTNVRVMAYSAKYASAYYGPFRDAVGSASNLGKGNKATYQMDPANSDEALHEVAADL 244
Query: 340 SEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDE 399
+EGAD+++ VKPG+PYLD++R ++D++ P YQVSGEY+M + E
Sbjct: 245 AEGADMVM-------VKPGMPYLDIVRRVKDEFRAPTFVYQVSGEYAMHMGAIQNGWLAE 297
Query: 400 QRVMMESLMCLRRAGADIILTYFALQAARCL 430
V++ESL +RAGAD ILTYFA QAA L
Sbjct: 298 -SVILESLTAFKRAGADGILTYFAKQAAEQL 327
>d2c1ha1 c.1.10.3 (A:10-328) 5-aminolaevulinate dehydratase, ALAD
(porphobilinogen synthase) {Prosthecochloris
vibrioformis [TaxId: 1098]}
Length = 319
Score = 354 bits (911), Expect = e-122
Identities = 171/328 (52%), Positives = 222/328 (67%), Gaps = 12/328 (3%)
Query: 104 RRPRRNRKSPAMRASFQETNLSPANFVYPLFIHEGEEDT-PIGAMPGCYRLGWRHGLVQE 162
RPRR R++ A+R QE L+ + V+PLF+ G + +MPG +R V+E
Sbjct: 2 HRPRRLRRTAALRNLVQENTLTVNDLVFPLFVMPGTNAVEEVSSMPGSFRFTIDR-AVEE 60
Query: 163 VAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALD 222
+ D+G+ + LF K+ G EAYNDNG++ + I +K P+L I TDVALD
Sbjct: 61 CKELYDLGIQGIDLFGIPEQ--KTEDGSEAYNDNGILQQAIRAIKKAVPELCIMTDVALD 118
Query: 223 PYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDA 282
P++ GHDG+V +DG+I+NDETV L K AVS A AGAD VSPSDMMDGR+GAIR ALD
Sbjct: 119 PFTPFGHDGLV-KDGIILNDETVEVLQKMAVSHAEAGADFVSPSDMMDGRIGAIREALDE 177
Query: 283 EGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEG 342
V I+SY AKYASSFYGPFR+AL S P+FGDK TYQMNPAN EA+ E + D EG
Sbjct: 178 TDHSDVGILSYAAKYASSFYGPFRDALHSAPQFGDKSTYQMNPANTEEAMKEVELDIVEG 237
Query: 343 ADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRV 402
ADI++ VKPGL YLD++ ++++ +P+A Y VSGEY+M+KA A IDE RV
Sbjct: 238 ADIVM-------VKPGLAYLDIVWRTKERFDVPVAIYHVSGEYAMVKAAAAKGWIDEDRV 290
Query: 403 MMESLMCLRRAGADIILTYFALQAARCL 430
MMESL+C++RAGADII TY+A +AA+ L
Sbjct: 291 MMESLLCMKRAGADIIFTYYAKEAAKKL 318
>d1l6sa_ c.1.10.3 (A:) 5-aminolaevulinate dehydratase, ALAD
(porphobilinogen synthase) {Escherichia coli [TaxId:
562]}
Length = 323
Score = 350 bits (900), Expect = e-120
Identities = 156/328 (47%), Positives = 215/328 (65%), Gaps = 13/328 (3%)
Query: 102 LSRRPRRNRKSPAMRASFQETNLSPANFVYPLFIHEGEED-TPIGAMPGCYRLGWRHGLV 160
L +RPRR RKSPA+RA F+ET LS + V P+F+ E +D + AMPG R+ +H L
Sbjct: 3 LIQRPRRLRKSPALRAMFEETTLSLNDLVLPIFVEEEIDDYKAVEAMPGVMRIPEKH-LA 61
Query: 161 QEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVA 220
+E+ + + G+ SV+ F + TG +A+ ++GLV R + K P++++ +D
Sbjct: 62 REIERIANAGIRSVMTFGISHHTDE--TGSDAWREDGLVARMSRICKQTVPEMIVMSDTC 119
Query: 221 LDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAAL 280
Y+S GH G++ E G + ND T+ L KQAV A AGAD ++PS MDG+V AIR AL
Sbjct: 120 FCEYTSHGHCGVLCEHG-VDNDATLENLGKQAVVAAAAGADFIAPSAAMDGQVQAIRQAL 178
Query: 281 DAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADES 340
DA GF+ +IMSY+ K+ASSFYGPFREA S GD+K+YQMNP N REA+ E+ DE+
Sbjct: 179 DAAGFKDTAIMSYSTKFASSFYGPFREAAGSAL-KGDRKSYQMNPMNRREAIRESLLDEA 237
Query: 341 EGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQ 400
+GAD L+ VKP YLD++R LR++ LPI AYQVSGEY+MIK IDE+
Sbjct: 238 QGADCLM-------VKPAGAYLDIVRELRERTELPIGAYQVSGEYAMIKFAALAGAIDEE 290
Query: 401 RVMMESLMCLRRAGADIILTYFALQAAR 428
+V++ESL ++RAGAD+I +YFAL A
Sbjct: 291 KVVLESLGSIKRAGADLIFSYFALDLAE 318
>d1pv8a_ c.1.10.3 (A:) 5-aminolaevulinate dehydratase, ALAD
(porphobilinogen synthase) {Human (Homo sapiens) [TaxId:
9606]}
Length = 320
Score = 334 bits (858), Expect = e-114
Identities = 130/322 (40%), Positives = 196/322 (60%), Gaps = 12/322 (3%)
Query: 113 PAMRA-SFQETNLSPANFVYPLFIHEGEED-TPIGAMPGCYRLGWRHGLVQEVAKARDVG 170
P +RA T L+ +N +YP+F+ + +D PI ++PG R G + L + + + G
Sbjct: 4 PLLRAWQTATTTLNASNLIYPIFVTDVPDDIQPITSLPGVARYGVKR-LEEMLRPLVEEG 62
Query: 171 VNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHD 230
+ V++F K G A ++ I LL+ +P+L++ DV L PY+S GH
Sbjct: 63 LRCVLIFGVPSRVPKDERGSAADSEESPAIEAIHLLRKTFPNLLVACDVCLCPYTSHGHC 122
Query: 231 GIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQH-VS 289
G++ E+G +E+ +L + A++ A+AG VV+PSDMMDGRV AI+ AL A G + VS
Sbjct: 123 GLLSENGAFRAEESRQRLAEVALAYAKAGCQVVAPSDMMDGRVEAIKEALMAHGLGNRVS 182
Query: 290 IMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFS 349
+MSY+AK+AS FYGPFR+A S+P FGD++ YQ+ P AL D EGAD+L+
Sbjct: 183 VMSYSAKFASCFYGPFRDAAKSSPAFGDRRCYQLPPGARGLALRAVDRDVREGADMLM-- 240
Query: 350 VLGSQVKPGLPYLDVIRLLRDKYP-LPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLM 408
VKPG+PYLD++R ++DK+P LP+A Y VSGE++M+ G D + ++E++
Sbjct: 241 -----VKPGMPYLDIVREVKDKHPDLPLAVYHVSGEFAMLWHGAQAGAFDLKAAVLEAMT 295
Query: 409 CLRRAGADIILTYFALQAARCL 430
RRAGADII+TY+ Q + L
Sbjct: 296 AFRRAGADIIITYYTPQLLQWL 317
>d1h7na_ c.1.10.3 (A:) 5-aminolaevulinate dehydratase, ALAD
(porphobilinogen synthase) {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 340
Score = 321 bits (823), Expect = e-108
Identities = 117/340 (34%), Positives = 174/340 (51%), Gaps = 12/340 (3%)
Query: 95 PVVPSLPLSRRPRRNRKSPAMRASFQETNLSPANFVYPLFIHEGEED-TPIGAMPGCYRL 153
+S P +R E L+ ++PLFI + +D T I ++P R+
Sbjct: 7 LETEPTEISSVLAGGYNHPLLRQWQSERQLTKNMLIFPLFISDNPDDFTEIDSLPNINRI 66
Query: 154 GWRHGLVQEVAKARDVGVNSVVLFP-KVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPD 212
G L + G+ SV+LF + K P G A + G V + I +++ +P+
Sbjct: 67 GVNR-LKDYLKPLVAKGLRSVILFGVPLIPGTKDPVGTAADDPAGPVIQGIKFIREYFPE 125
Query: 213 LVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGR 272
L I DV L Y+S GH G++ +DG I + +V +L AV+ A+AGA V+PSDM+DGR
Sbjct: 126 LYIICDVCLCEYTSHGHCGVLYDDGTINRERSVSRLAAVAVNYAKAGAHCVAPSDMIDGR 185
Query: 273 VGAIRAALDA-EGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREA 331
+ I+ L ++SY AK++ + YGPFR+A S P GD+K YQ+ PA A
Sbjct: 186 IRDIKRGLINANLAHKTFVLSYAAKFSGNLYGPFRDAACSAPSNGDRKCYQLPPAGRGLA 245
Query: 332 LVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYP-LPIAAYQVSGEYSMIKA 390
+ D SEGAD ++ VKP YLD++R + LPI AY VSGEY+M+ A
Sbjct: 246 RRALERDMSEGADGII-------VKPSTFYLDIMRDASEICKDLPICAYHVSGEYAMLHA 298
Query: 391 GGALKMIDEQRVMMESLMCLRRAGADIILTYFALQAARCL 430
++D + + ES RAGA +I+TY A + L
Sbjct: 299 AAEKGVVDLKTIAFESHQGFLRAGARLIITYLAPEFLDWL 338
>d1oeya_ d.15.2.2 (A:) Neutrophil cytosol factor 2 (p67phox
component of NADPH oxidase) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 82
Score = 27.0 bits (60), Expect = 1.1
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 354 QVKPGLPYLDVIRLLRDKYPLPIAAYQVS 382
+ +PGLPY V ++ K L + ++S
Sbjct: 19 KTQPGLPYSQVRDMVSKKLELRLEHTKLS 47
>d1smyd_ e.29.1.2 (D:) RNA-polymerase beta-prime {Thermus thermophilus
[TaxId: 274]}
Length = 1504
Score = 29.4 bits (65), Expect = 1.1
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 109 NRKSPAMRASFQET 122
+ KS ASFQ T
Sbjct: 1429 STKSWLSAASFQNT 1442
>d1twfa_ e.29.1.2 (A:) RBP1 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 1449
Score = 28.7 bits (63), Expect = 1.8
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 108 RNRKSPAMRASFQET 122
R+ MR SF+ET
Sbjct: 1390 RSNTGALMRCSFEET 1404
>d1twda_ c.1.30.1 (A:) Copper homeostasis protein CutC {Shigella
flexneri [TaxId: 623]}
Length = 247
Score = 28.0 bits (62), Expect = 2.0
Identities = 18/89 (20%), Positives = 35/89 (39%), Gaps = 15/89 (16%)
Query: 334 EAQADESEGAD-ILLFSVLGSQVKPGL-PYLDVIRLLRDKYPLPIAAYQVSGEYSMI--K 389
A + GAD + L + GL P L V++ +R + +P+ + +I +
Sbjct: 12 CALTAQQNGADRVELCAAPKEG---GLTPSLGVLKSVRQRVTIPV--------HPIIRPR 60
Query: 390 AGGALKMIDEQRVMMESLMCLRRAGADII 418
G E ++E + +R G +
Sbjct: 61 GGDFCYSDGEFAAILEDVRTVRELGFPGL 89
>d1wr8a_ c.108.1.10 (A:) Phosphoglycolate phosphatase, PGPase
{Pyrococcus horikoshii [TaxId: 53953]}
Length = 230
Score = 26.9 bits (58), Expect = 5.0
Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 6/55 (10%)
Query: 237 GVIMNDETVHQLC------KQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGF 285
G ND ++ QA + AD V+ + +G AI L+ G+
Sbjct: 175 GDGENDLDAFKVVGYKVAVAQAPKILKENADYVTKKEYGEGGAEAIYHILEKFGY 229
>d2mev1_ b.121.4.1 (1:) Mengo encephalomyocarditis virus coat
proteins {Mengovirus [TaxId: 12107]}
Length = 268
Score = 26.5 bits (58), Expect = 6.1
Identities = 5/38 (13%), Positives = 13/38 (34%), Gaps = 7/38 (18%)
Query: 291 MSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANY 328
S + + +Y + + RF + + P +
Sbjct: 191 NSPLSVLPAVWY-------NGHKRFDNTGDLGIAPNSD 221
>d1v02a_ c.1.8.4 (A:) Plant beta-glucosidase (myrosinase) {Sorghum
bicolor [TaxId: 4558]}
Length = 484
Score = 26.7 bits (58), Expect = 6.8
Identities = 10/48 (20%), Positives = 20/48 (41%), Gaps = 7/48 (14%)
Query: 132 PLFIHE---GEEDTPIGAMPGC----YRLGWRHGLVQEVAKARDVGVN 172
P++I E G+ D P RL + + + ++ D+G +
Sbjct: 387 PMYITENGMGDIDKGDLPKPVALEDHTRLDYIQRHLSVLKQSIDLGAD 434
>d1ji8a_ d.203.1.1 (A:) DsrC, the gamma subunit of dissimilatory
sulfite reductase {Archaeon Pyrobaculum aerophilum
[TaxId: 13773]}
Length = 111
Score = 25.5 bits (56), Expect = 7.6
Identities = 11/56 (19%), Positives = 23/56 (41%), Gaps = 11/56 (19%)
Query: 317 DKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKY 372
D+ + NP ++ E + E A E EG + + +++ LR+ +
Sbjct: 19 DEDCFMQNPEDWDEKVAEWLARELEGIQKM-----------TEEHWKLVKYLREYW 63
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.135 0.400
Gapped
Lambda K H
0.267 0.0566 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,593,472
Number of extensions: 74362
Number of successful extensions: 242
Number of sequences better than 10.0: 1
Number of HSP's gapped: 217
Number of HSP's successfully gapped: 16
Length of query: 435
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 347
Effective length of database: 1,199,356
Effective search space: 416176532
Effective search space used: 416176532
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.9 bits)