BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013862
(435 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3PE6|A Chain A, Crystal Structure Of A Soluble Form Of Human Mgll In
Complex With An Inhibitor
Length = 303
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 11/58 (18%)
Query: 37 PVYLVGESLGACLALAVAARNP----DMDLV--LILANP--ATSFR---KSLLQTIMP 83
PV+L+G S+G +A+ AA P M L+ L+LANP AT+F+ +L +++P
Sbjct: 115 PVFLLGHSMGGAIAILTAAERPGHFAGMVLISPLVLANPESATTFKVLAAKVLNSVLP 172
>pdb|1Y5E|A Chain A, Crystal Structure Of Molybdenum Cofactor Biosynthesis
Protein B
pdb|1Y5E|B Chain B, Crystal Structure Of Molybdenum Cofactor Biosynthesis
Protein B
pdb|1Y5E|C Chain C, Crystal Structure Of Molybdenum Cofactor Biosynthesis
Protein B
Length = 169
Score = 32.3 bits (72), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
Query: 217 FLEDGVDLVTTIKGAGYYRRGRIVDYVSDFIPPTTIEVNKVYEEYRWMVDLTSSVMLSTL 276
+ ++ VD+V T G G +R ++ VS + + +++ ++ D+ SS LS
Sbjct: 68 YHKEDVDVVLTNGGTGITKRDVTIEAVSALLDKEIVGFGELFRXISYLEDIGSSAXLSRA 127
Query: 277 PDGKIVRGL--SGIPSEGPVLLVGNHMLL 303
G I R + S S G V L N ++L
Sbjct: 128 IGGTIGRKVVFSXPGSSGAVRLAXNKLIL 156
>pdb|3HJU|A Chain A, Crystal Structure Of Human Monoglyceride Lipase
pdb|3HJU|B Chain B, Crystal Structure Of Human Monoglyceride Lipase
Length = 342
Score = 32.0 bits (71), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 11/58 (18%)
Query: 37 PVYLVGESLGACLALAVAARNP----DMDLV--LILANP--ATSFR---KSLLQTIMP 83
PV+L+G S+G +A+ AA P M L+ L+LANP AT+F+ +L ++P
Sbjct: 133 PVFLLGHSMGGAIAILTAAERPGHFAGMVLISPLVLANPESATTFKVLAAKVLNLVLP 190
>pdb|3JWE|A Chain A, Crystal Structure Of Human Mono-Glyceride Lipase In
Complex With Sar629
pdb|3JWE|B Chain B, Crystal Structure Of Human Mono-Glyceride Lipase In
Complex With Sar629
Length = 320
Score = 32.0 bits (71), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 29/46 (63%), Gaps = 8/46 (17%)
Query: 37 PVYLVGESLGACLALAVAARNP----DMDLV--LILANP--ATSFR 74
PV+L+G S+G +A+ AA P M L+ L+LANP AT+F+
Sbjct: 132 PVFLLGHSMGGAIAILTAAERPGHFAGMVLISPLVLANPESATTFK 177
>pdb|3PF8|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536
pdb|3PF8|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536
Length = 270
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 36 RPVYLVGESLGACLALAVAARNPDMDLVLILANPATSFRKSLLQ 79
R +YLVG S G +A +A PD+ ++L PA + + L+
Sbjct: 119 RNIYLVGHSQGGVVASMLAGLYPDLIKKVVLLAPAATLKGDALE 162
>pdb|3QIT|A Chain A, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|B Chain B, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|C Chain C, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|D Chain D, Thioesterase Domain From Curacin Biosynthetic Pathway
Length = 286
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 13/53 (24%)
Query: 35 NRPVYLVGESLGACLALAVAARNPDMDLVLILANPATSFRKSLLQTIMPIPAE 87
++P+ LVG S+GA LA A+A+ P LIL +P+PAE
Sbjct: 94 DQPLLLVGHSMGAMLATAIASVRPKKIKELILVE-------------LPLPAE 133
>pdb|3JW8|A Chain A, Crystal Structure Of Human Mono-Glyceride Lipase
pdb|3JW8|B Chain B, Crystal Structure Of Human Mono-Glyceride Lipase
Length = 320
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 11/58 (18%)
Query: 37 PVYLVGESLGACLALAVAARNPD------MDLVLILANP--ATSFR---KSLLQTIMP 83
PV+L+G S G +A+ AA P + L+LANP AT+F+ +L ++P
Sbjct: 132 PVFLLGHSXGGAIAILTAAERPGHFAGXVLISPLVLANPESATTFKVLAAKVLNLVLP 189
>pdb|3RK4|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31
pdb|3RLT|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31 In Complex With 1, 2, 3 -
Trichloropropane
Length = 299
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 193 EGDRLCRALPNCQTRRFXXXXHFLFLEDGVDLVTT 227
E RL +LPNC+T HFL ED DL+ +
Sbjct: 251 EAARLAESLPNCKTVDIGPGLHFL-QEDNPDLIGS 284
>pdb|3QM1|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate, Form Ii
Length = 265
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 36 RPVYLVGESLGACLALAVAARNPDMDLVLILANPATSFRKSLLQ 79
R +YLVG + G +A +A PD+ ++L PA + + L+
Sbjct: 119 RNIYLVGHAQGGVVASMLAGLYPDLIKKVVLLAPAATLKGDALE 162
>pdb|3PF9|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant
pdb|3PFB|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate
pdb|3PFB|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate
pdb|3PFC|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Ferulic
Acid
pdb|3S2Z|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Caffeic
Acid
pdb|3S2Z|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Caffeic
Acid
Length = 270
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 36 RPVYLVGESLGACLALAVAARNPDMDLVLILANPATSFRKSLLQ 79
R +YLVG + G +A +A PD+ ++L PA + + L+
Sbjct: 119 RNIYLVGHAQGGVVASMLAGLYPDLIKKVVLLAPAATLKGDALE 162
>pdb|4FWB|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31 In Complex With 1, 2, 3 -
Trichloropropane
Length = 292
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 193 EGDRLCRALPNCQTRRFXXXXHFLFLEDGVDLVTT 227
E RL +LPNC+T HFL ED DL+ +
Sbjct: 248 EAARLAESLPNCKTVDIGPGLHFL-QEDNPDLIGS 281
>pdb|3FWH|A Chain A, Structure Of Haloalkane Dehalogenase Mutant Dha15
(I135fC176Y) FROM Rhodococcus Rhodochrous
Length = 299
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 179 ILCSGRDQLLPSEEEGDRLCRALPNCQTRRFXXXXHFLFLEDGVDLVTT 227
+L G +L E RL +LPNC+T H+L ED DL+ +
Sbjct: 237 LLFWGTPGVLIPPAEAARLAESLPNCKTVDIGPGLHYL-QEDNPDLIGS 284
>pdb|3FBW|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Dhaa Mutant C176y
Length = 299
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 179 ILCSGRDQLLPSEEEGDRLCRALPNCQTRRFXXXXHFLFLEDGVDLVTT 227
+L G +L E RL +LPNC+T H+L ED DL+ +
Sbjct: 237 LLFWGTPGVLIPPAEAARLAESLPNCKTVDIGPGLHYL-QEDNPDLIGS 284
>pdb|4F60|A Chain A, Crystal Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant (t148l, G171q, A172v, C176f)
Length = 299
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 179 ILCSGRDQLLPSEEEGDRLCRALPNCQTRRFXXXXHFLFLEDGVDLVTT 227
+L G +L E RL +LPNC+T H+L ED DL+ +
Sbjct: 237 LLFWGTPGVLIPPAEAARLAESLPNCKTVDIGPGLHYL-QEDNPDLIGS 284
>pdb|1CQW|A Chain A, Nai Cocrystallised With Haloalkane Dehalogenase From A
Rhodococcus Species
Length = 295
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 179 ILCSGRDQLLPSEEEGDRLCRALPNCQTRRFXXXXHFLFLEDGVDLVTT 227
+L G +L E RL +LPNC+T H+L ED DL+ +
Sbjct: 234 LLFWGTPGVLIPPAEAARLAESLPNCKTVDIGPGLHYL-QEDNPDLIGS 281
>pdb|1BN6|A Chain A, Haloalkane Dehalogenase From A Rhodococcus Species
pdb|1BN7|A Chain A, Haloalkane Dehalogenase From A Rhodococcus Species
Length = 294
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 179 ILCSGRDQLLPSEEEGDRLCRALPNCQTRRFXXXXHFLFLEDGVDLVTT 227
+L G +L E RL +LPNC+T H+L ED DL+ +
Sbjct: 237 LLFWGTPGVLIPPAEAARLAESLPNCKTVDIGPGLHYL-QEDNPDLIGS 284
>pdb|4F5Z|A Chain A, Crystal Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant (l95v, A172v)
Length = 299
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 179 ILCSGRDQLLPSEEEGDRLCRALPNCQTRRFXXXXHFLFLEDGVDLVTT 227
+L G +L E RL +LPNC+T H+L ED DL+ +
Sbjct: 237 LLFWGTPGVLIPPAEAARLAESLPNCKTVDIGPGLHYL-QEDNPDLIGS 284
>pdb|3G9X|A Chain A, Structure Of Haloalkane Dehalogenase Dhaa14 Mutant I135f
From Rhodococcus Rhodochrous
Length = 299
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 179 ILCSGRDQLLPSEEEGDRLCRALPNCQTRRFXXXXHFLFLEDGVDLVTT 227
+L G +L E RL +LPNC+T H+L ED DL+ +
Sbjct: 237 LLFWGTPGVLIPPAEAARLAESLPNCKTVDIGPGLHYL-QEDNPDLIGS 284
>pdb|3P2M|A Chain A, Crystal Structure Of A Novel Esterase Rv0045c From
Mycobacterium Tuberculosis
Length = 330
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 39 YLVGESLGACLALAVAARNPDM--DLVLILANPATSFRKSLLQTIMPIPAELMSGQ 92
++VG SLG A+ +AA PD+ +LVL+ P+ R + L LM G+
Sbjct: 149 FVVGMSLGGLTAIRLAAMAPDLVGELVLVDVTPSALQRHAELTAEQRGTVALMHGE 204
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.140 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,560,307
Number of Sequences: 62578
Number of extensions: 440314
Number of successful extensions: 1163
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1154
Number of HSP's gapped (non-prelim): 19
length of query: 435
length of database: 14,973,337
effective HSP length: 102
effective length of query: 333
effective length of database: 8,590,381
effective search space: 2860596873
effective search space used: 2860596873
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (25.0 bits)