RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 013862
(435 letters)
>gnl|CDD|153249 cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like.
Lysophospholipid acyltransferase (LPLAT) superfamily
member: acyltransferases of de novo and remodeling
pathways of glycerophospholipid biosynthesis which
catalyze the incorporation of an acyl group from either
acylCoAs or acyl-acyl carrier proteins (acylACPs) into
acceptors such as glycerol 3-phosphate, dihydroxyacetone
phosphate or lyso-phosphatidic acid. Included in this
suubgroup are such LPLATs as 2-acylglycerol
O-acyltransferase (MGAT), and similar proteins.
Length = 212
Score = 128 bits (323), Expect = 8e-35
Identities = 54/153 (35%), Positives = 73/153 (47%), Gaps = 9/153 (5%)
Query: 279 GKIVRGLSGIPSEGPVLLVGNHMLLGLEALPMVPTFV-IERNILVRAIAHPMVFFNAKDG 337
VRGL IP EGP LLV H L ++ + F+ + L RA+A +F
Sbjct: 7 VYEVRGLENIPDEGPALLVHPHGGLPIDGALLAAAFLLLFPGRLPRALADHFLF------ 60
Query: 338 GLPDLVTYDTFRIMGSVPVSAINFYKLVSSKAHVLLYPGGVREAFHRKGEEYKLFWPESS 397
P D R +G+VP S N +L+ VL++PGG REA K EEY L W +
Sbjct: 61 --PLPGLRDLLRRLGAVPGSRENCVRLLREGELVLIFPGGAREALKSKREEYYLLWKKRK 118
Query: 398 EFVRVAAAFGGKIVPFGVVGEDDLAQVIKLEYF 430
F R+A G IVP GE++L +V+
Sbjct: 119 GFARLALRAGAPIVPVFTFGEEELFRVLGDPDG 151
>gnl|CDD|223669 COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta
hydrolase superfamily) [General function prediction
only].
Length = 282
Score = 55.8 bits (133), Expect = 1e-08
Identities = 47/195 (24%), Positives = 65/195 (33%), Gaps = 7/195 (3%)
Query: 36 RPVYLVGESLGACLALAVAARNPDMDLVLILANPATSFRKSLLQTIMPIPAELMSGQMTL 95
V LVG S+G +ALA+A R+PD L+L PA P A ++ L
Sbjct: 88 EKVVLVGHSMGGAVALALALRHPDRVRGLVLIGPAPPPGLLEAALRQPAGAAPLAALADL 147
Query: 96 TLSYLLSLLTGDPLKMAMDSIVKGLFLQSTIQERSQDFVAMSSYLPVLANILPKETLLWK 155
LL L + + + ++ A A L
Sbjct: 148 ----LLGLDAAAFAALLAALGLLAALAAAARAGLAEALRAPLLGAAAAAFARAARADLAA 203
Query: 156 LELLKSASAYANARLDAVKAQTLILCSGRDQLLPSEEEGDRLCRALPN-CQTRRFGGGGH 214
L A L + TLI+ D ++P E RL ALPN + G GH
Sbjct: 204 ALLALLDRDLR-AALARITVPTLIIHGEDDPVVP-AELARRLAAALPNDARLVVIPGAGH 261
Query: 215 FLFLEDGVDLVTTIK 229
F LE +
Sbjct: 262 FPHLEAPEAFAAALL 276
>gnl|CDD|225176 COG2267, PldB, Lysophospholipase [Lipid metabolism].
Length = 298
Score = 47.8 bits (114), Expect = 4e-06
Identities = 38/209 (18%), Positives = 67/209 (32%), Gaps = 24/209 (11%)
Query: 14 HFTGLLKLIERTIRSENCRSSNRPVYLVGESLGACLALAVAARNPD-MDLVLILANPATS 72
+ L TI + PV+L+G S+G +AL AR P +D + +L++PA
Sbjct: 88 DYVDDLDAFVETIAEPDPG---LPVFLLGHSMGGLIALLYLARYPPRIDGL-VLSSPA-- 141
Query: 73 FRKSLLQTIMPIPAELMSGQMTLTLSYLLSLLTGDPLKMAMDSIVKGLFLQSTIQERSQD 132
+ + + + + + + S R
Sbjct: 142 LGLGGAILRLILARLALKLLGRIRPKLPVDSNLLEGVLTDDLS-------------RDPA 188
Query: 133 FVAMSSYLPVLANILPKETLLWKLELLKSASAYANARLDAVKAQTLILCSGRDQLLPSEE 192
VA Y + W L + A A+ L+L G D+++ + E
Sbjct: 189 EVAA--YEADPLIGVGGPVSRWVDLALLAGRVPALRDAPAIALPVLLLQGGDDRVVDNVE 246
Query: 193 EGDRLCRAL--PNCQTRRFGGGGHFLFLE 219
R P+ + + G H L E
Sbjct: 247 GLARFFERAGSPDKELKVIPGAYHELLNE 275
>gnl|CDD|221720 pfam12697, Abhydrolase_6, Alpha/beta hydrolase family. This family
contains alpha/beta hydrolase enzymes of diverse
specificity.
Length = 187
Score = 45.1 bits (107), Expect = 2e-05
Identities = 27/89 (30%), Positives = 38/89 (42%), Gaps = 4/89 (4%)
Query: 134 VAMSSYLPVLANILPKETLLWKLELLKSASAYANAR--LDAVKAQTLILCSGRDQLLPSE 191
V +S L L +L + L LL++A A+ R L + L++ D L+P
Sbjct: 94 VLISPPLRDLEELLAADAAAL-LALLRAALLDADLREALARLTVPVLVIHGEDDPLVP-P 151
Query: 192 EEGDRLCRALPNCQTRRFGGGGHFLFLED 220
E RL ALP + G GH LE
Sbjct: 152 EAARRLAEALPGAELVVLPGAGHLPHLEH 180
Score = 36.3 bits (84), Expect = 0.013
Identities = 20/44 (45%), Positives = 25/44 (56%)
Query: 36 RPVYLVGESLGACLALAVAARNPDMDLVLILANPATSFRKSLLQ 79
PV LVG SLG +ALA AAR P+ L+L +P + LL
Sbjct: 65 GPVVLVGHSLGGAVALAAAARRPERVAGLVLISPPLRDLEELLA 108
>gnl|CDD|201306 pfam00561, Abhydrolase_1, alpha/beta hydrolase fold. This
catalytic domain is found in a very wide range of
enzymes.
Length = 226
Score = 44.8 bits (106), Expect = 3e-05
Identities = 42/187 (22%), Positives = 60/187 (32%), Gaps = 14/187 (7%)
Query: 36 RPVYLVGESLGACLALAVAARNPDMDLV--LILANPATSFRKSLLQTIMPIPAELMSGQM 93
V LVG S+G +ALA AA+ P D V L+L L + G +
Sbjct: 42 DKVNLVGHSMGGLIALAYAAKYP--DRVKALVLVGTVHPA---GLSS-----PLTPRGNL 91
Query: 94 TLTLSYLLSLLTGDPLKMAMDSIVKGLFLQSTIQERSQDFVAMSSYLPVLANILPKETLL 153
L D ++ + +K S L L + LL
Sbjct: 92 LGLLLDNFFNRLYDSVEALLGRAIKQFQALGRPFVSDFLKQFELSSLIRFGETLALDGLL 151
Query: 154 WKLELLKSASAYANARLDAVKAQTLILCSGRDQLLPSEEEGDRLCRALPNCQTRRFGGGG 213
+ A L + TLI+ D L+P + ++L PN Q G
Sbjct: 152 GYALGYDLVWDRS-AALKDIDVPTLIIWGDDDPLVP-PDASEKLAALFPNAQLVVIDDAG 209
Query: 214 HFLFLED 220
H LE
Sbjct: 210 HLAQLEK 216
>gnl|CDD|221718 pfam12695, Abhydrolase_5, Alpha/beta hydrolase family. This family
contains a diverse range of alpha/beta hydrolase
enzymes.
Length = 145
Score = 40.1 bits (94), Expect = 4e-04
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 36 RPVYLVGESLGACLALAVAARNPDMDLVLILANPATSFRKSLLQTIMPIPAELMSGQ 92
+ LVG SLG +AL +AAR+P + ++LA L + +P ++ G
Sbjct: 58 ERIVLVGHSLGGGVALLLAARDPRVKAAVVLAAGDPPDALDDLAKL-TVPVLIIHGT 113
Score = 28.5 bits (64), Expect = 4.0
Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Query: 165 YANARLDAVKAQTLILCSGRDQLLPSEEEGDRLCRALPN-CQTRRFGGGGHF 215
A L + LI+ RD ++P EE + L ALP + G GH
Sbjct: 95 DALDDLAKLTVPVLIIHGTRDGVVPP-EEAEALAAALPGPAELVVIEGAGHS 145
>gnl|CDD|132386 TIGR03343, biphenyl_bphD, 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate
hydrolase. Members of this family are
2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or
HOPD hydrolase, the BphD protein of biphenyl
degradation. BphD acts on the product of ring
meta-cleavage by BphC. Many species carrying bphC and
bphD are capable of degrading polychlorinated biphenyls
as well as biphenyl itself.
Length = 282
Score = 41.1 bits (96), Expect = 6e-04
Identities = 48/187 (25%), Positives = 75/187 (40%), Gaps = 37/187 (19%)
Query: 39 YLVGESLGACLALAVAARNPDMDLVLILANPATSFRKSLLQTIMPIPAE-------LMSG 91
+LVG S+G AL A PD LIL P SL P+P E L +
Sbjct: 104 HLVGNSMGGATALNFALEYPDRIGKLILMGPG-GLGPSLFA---PMPMEGIKLLFKLYAE 159
Query: 92 QMTLTLSYLLSLLTGDPLKMAMDSIVKGLFLQSTIQERS---QDFVAMSSYLPVLANILP 148
TL +L++ D + + +++G + IQ + ++F+ S P+
Sbjct: 160 PSYETLKQMLNVFLFDQ-SLITEELLQGRW--ENIQRQPEHLKNFLISSQKAPLST---- 212
Query: 149 KETLLWKLELLKSASAYANARLDAVKAQTLILCSGRDQLLPSEEEGDRLCRALPNCQTRR 208
W + ARL +KA+TL+ GRD + G +L +P+ Q
Sbjct: 213 -----WDV----------TARLGEIKAKTLVTW-GRDDRFVPLDHGLKLLWNMPDAQLHV 256
Query: 209 FGGGGHF 215
F GH+
Sbjct: 257 FSRCGHW 263
>gnl|CDD|178380 PLN02783, PLN02783, diacylglycerol O-acyltransferase.
Length = 315
Score = 40.8 bits (96), Expect = 0.001
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Query: 351 MGSVPVSAINFYKLVSSKAHVLLYPGGVREAFHRKGEEYKLFWPESSEFVRVAAAFGGKI 410
+G P S NF L+ + ++ PGGV+E + + + FV++A G +
Sbjct: 153 LGLDPASRKNFTSLLKAGYSCIIVPGGVQECLYMEHGSEVAYLKSRKGFVKIAMETGAPL 212
Query: 411 VP---FG 414
VP FG
Sbjct: 213 VPVFCFG 219
>gnl|CDD|211851 TIGR03611, RutD, pyrimidine utilization protein D. This protein is
observed in operons extremely similar to that
characterized in E. coli K-12 responsible for the import
and catabolism of pyrimidines, primarily uracil. This
protein is a member of the hydrolase, alpha/beta fold
family defined by pfam00067.
Length = 248
Score = 39.7 bits (93), Expect = 0.002
Identities = 43/195 (22%), Positives = 67/195 (34%), Gaps = 63/195 (32%)
Query: 41 VGESLGACLALAVAARNPDMDLVLIL------ANPAT----SFRKSLL-----------Q 79
VG +LG + L +A P+ L+L +P T R +LL Q
Sbjct: 84 VGHALGGLIGLQLALDYPERLTSLVLINGWSRPDPHTRRCFDVRIALLYHAGPEAYVHAQ 143
Query: 80 TIMPIPAELMSGQMTLTLSYLLSLLTGDPLKMAMDSIVKGLFLQSTIQERSQDFVAMSSY 139
+ PA+ +S L D
Sbjct: 144 PLFLYPADWISENAPR--------LAADEAHA---------------------------- 167
Query: 140 LPVLANILPKETLLWKLELLKSASAYANARLDAVKAQTLILCSGRDQLLPSEEEGDRLCR 199
LA+ K +L ++ L++ +ARLD ++ L++ + D L+P RL
Sbjct: 168 ---LAHFPGKNNVLRRINALEAFDV--SARLDRIRHPVLLIAARDDMLVPYTCS-LRLAA 221
Query: 200 ALPNCQTRRFGGGGH 214
ALPN Q + GGH
Sbjct: 222 ALPNAQLKLLPYGGH 236
>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine
acyltransferase; Validated.
Length = 1146
Score = 39.5 bits (93), Expect = 0.003
Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 23/82 (28%)
Query: 282 VRGLSGIPSEGPVLLVGNHM-----LLGLEALPMVPTFVIERNILVRAIAHPMVFFNAKD 336
V G IP++G LL+GNH+ L A P FV+ER+I +
Sbjct: 431 VEGRENIPAKGGALLLGNHVSWIDWALLQAASPRPIRFVMERSIYEKWYLKWF------- 483
Query: 337 GGLPDLVTYDTFRIMGSVPVSA 358
F++ G +P+S+
Sbjct: 484 -----------FKLFGVIPISS 494
>gnl|CDD|215315 PLN02578, PLN02578, hydrolase.
Length = 354
Score = 36.7 bits (85), Expect = 0.018
Identities = 17/52 (32%), Positives = 22/52 (42%)
Query: 36 RPVYLVGESLGACLALAVAARNPDMDLVLILANPATSFRKSLLQTIMPIPAE 87
P LVG SLG AL+ A P++ + L N A F + I E
Sbjct: 152 EPAVLVGNSLGGFTALSTAVGYPELVAGVALLNSAGQFGSESREKEEAIVVE 203
>gnl|CDD|216567 pfam01553, Acyltransferase, Acyltransferase. This family contains
acyltransferases involved in phospholipid biosynthesis
and other proteins of unknown function. This family also
includes tafazzin, the Barth syndrome gene.
Length = 131
Score = 35.0 bits (81), Expect = 0.024
Identities = 37/145 (25%), Positives = 58/145 (40%), Gaps = 27/145 (18%)
Query: 282 VRGLSGIPSEGPVLLVGNHMLLGLEALPMVPTFVIERNILVRAIAHPMVFFNAKDGGLPD 341
V GL +P GP ++V NH L+ L + ++L+ P+VF AKD L
Sbjct: 4 VHGLENLPRGGPAIVVANH-QSYLDPLLL--------SLLLPKRGRPLVFV-AKDELLNL 53
Query: 342 LVTYDTFRIMGSVPVSAINFYKLVSSKAH----------VLLYPGGVREAFHRKGEEYKL 391
+ R++G + + N ++ + VL++P G R R GE
Sbjct: 54 PLLGWLMRLLGCIFIDRKNAKDAANTLEYLVELLREGELVLIFPEGTR---SRGGE---- 106
Query: 392 FWPESSEFVRVAAAFGGKIVPFGVV 416
P R+A G IVP +
Sbjct: 107 LLPFKKGAFRLAREAGVPIVPVAIS 131
>gnl|CDD|112781 pfam03982, DAGAT, Diacylglycerol acyltransferase. The terminal
step of triacylglycerol (TAG) formation is catalyzed by
the enzyme diacylglycerol acyltransferase (DAGAT).
Length = 297
Score = 35.5 bits (82), Expect = 0.039
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Query: 352 GSVPVSAINFYKLVSSKAH---VLLYPGGVREAFHRKGEEYKLFWPESSEFVRVAAAFGG 408
G + VS + ++ V+L GG EA ++ L FVR+A G
Sbjct: 121 GLIEVSRESIEYVLDKCGKGRAVVLVVGGAAEALEAHPGKHTLTLKNRKGFVRIALKTGA 180
Query: 409 KIVPFGVVGEDDL 421
+VP GE+D+
Sbjct: 181 DLVPVYSFGENDV 193
>gnl|CDD|165193 PHA02857, PHA02857, monoglyceride lipase; Provisional.
Length = 276
Score = 34.9 bits (80), Expect = 0.068
Identities = 13/35 (37%), Positives = 24/35 (68%)
Query: 35 NRPVYLVGESLGACLALAVAARNPDMDLVLILANP 69
PV+L+G S+GA +++ A +NP++ +IL +P
Sbjct: 96 GVPVFLLGHSMGATISILAAYKNPNLFTAMILMSP 130
>gnl|CDD|223282 COG0204, PlsC, 1-acyl-sn-glycerol-3-phosphate acyltransferase
[Lipid metabolism].
Length = 255
Score = 34.5 bits (79), Expect = 0.082
Identities = 40/150 (26%), Positives = 58/150 (38%), Gaps = 36/150 (24%)
Query: 282 VRGLSGIPSEGPVLLVGNH-----MLLGLEALPMVPTFVIERNILVRAIAHPMVFFNAKD 336
V GL +P GP L+V NH LL ALP R VR +A +F
Sbjct: 54 VEGLENLPKGGPALVVANHQSFLDPLLLSLALP--------RRGPVRFVAKKELFKVPLL 105
Query: 337 GGLPDLVTYDTFRIMGSVPVSAIN---------FYKLVSSKAHVLLYPGGVREAFHRKGE 387
G L R++G++PV N +L + ++++P G R +
Sbjct: 106 GWL--------LRLLGAIPVDRENPDDETLRAAVARLKAGGRSLVIFPEGTRSRGGEELL 157
Query: 388 EYKLFWPESSEFVRVAAAFGGKIVPFGVVG 417
+K R+A G IVP +VG
Sbjct: 158 PFK------RGAARLALEAGVPIVPVAIVG 181
>gnl|CDD|130799 TIGR01738, bioH, pimelyl-[acyl-carrier protein] methyl ester
esterase. This CoA-binding enzyme is required for the
production of pimeloyl-coenzyme A, the substrate of the
BioF protein early in the biosynthesis of biotin. Its
exact function is unknown, but is proposed in ref 2.
This enzyme belongs to the alpha/beta hydrolase fold
family (Pfam model pfam00561). Members of this family
are restricted to the Proteobacteria [Biosynthesis of
cofactors, prosthetic groups, and carriers, Biotin].
Length = 245
Score = 33.6 bits (77), Expect = 0.16
Identities = 46/191 (24%), Positives = 70/191 (36%), Gaps = 32/191 (16%)
Query: 36 RPVYLVGESLGACLALAVAARNPDM--DLVLILANPATSFRKSLLQTIMPIPAELMSGQM 93
P +G SLG +AL +AA +PD LV + ++P S R+ + I P Q+
Sbjct: 65 DPAIWLGWSLGGLVALHIAATHPDRVRALVTVASSPCFSAREDWPEGIKPDVLTGFQQQL 124
Query: 94 ----TLTLSYLLSLLT-GDPLKMAMDSIVKGLFLQSTIQERSQDFVAMSSYLPVLANILP 148
T+ L+L T G P + L Q +LA P
Sbjct: 125 SDDYQRTIERFLALQTLGTP---TARQDARAL---------KQT---------LLARPTP 163
Query: 149 K-ETLLWKLELLKSASAYANARLDAVKAQTLILCSGRDQLLPSEEEGDRLCRALPNCQTR 207
+ L LE+L + L + L L D L+P+ + L + P+ +
Sbjct: 164 NVQVLQAGLEILATVD--LRQPLQNISVPFLRLYGYLDGLVPA-KVVPYLDKLAPHSELY 220
Query: 208 RFGGGGHFLFL 218
F H FL
Sbjct: 221 IFAKAAHAPFL 231
>gnl|CDD|234315 TIGR03695, menH_SHCHC,
2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate
synthase. This protein catalyzes the formation of
SHCHC, or (1 R,6
R)-2-succinyl-6-hydroxy-2,
4-cyclohexadiene-1-carboxylate, by elmination of
pyruvate from
2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-
carboxylate (SEPHCHC). Note that SHCHC synthase activity
previously was attributed to MenD, which in fact is
SEPHCHC synthase [Biosynthesis of cofactors, prosthetic
groups, and carriers, Menaquinone and ubiquinone].
Length = 252
Score = 33.0 bits (76), Expect = 0.20
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 32 RSSNRPVYLVGESLGACLALAVAARNPDMDLVLIL--ANP 69
+ P +LVG S+G +AL A + P+ LIL +P
Sbjct: 67 QLGIEPFFLVGYSMGGRIALYYALQYPERVQGLILESGSP 106
>gnl|CDD|153244 cd06551, LPLAT, Lysophospholipid acyltransferases (LPLATs) of
glycerophospholipid biosynthesis. Lysophospholipid
acyltransferase (LPLAT) superfamily members are
acyltransferases of de novo and remodeling pathways of
glycerophospholipid biosynthesis. These proteins
catalyze the incorporation of an acyl group from either
acylCoAs or acyl-acyl carrier proteins (acylACPs) into
acceptors such as glycerol 3-phosphate, dihydroxyacetone
phosphate or lyso-phosphatidic acid. Included in this
superfamily are LPLATs such as glycerol-3-phosphate
1-acyltransferase (GPAT, PlsB),
1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT,
PlsC), lysophosphatidylcholine acyltransferase 1
(LPCAT-1), lysophosphatidylethanolamine acyltransferase
(LPEAT, also known as, MBOAT2, membrane-bound
O-acyltransferase domain-containing protein 2), lipid A
biosynthesis lauroyl/myristoyl acyltransferase,
2-acylglycerol O-acyltransferase (MGAT),
dihydroxyacetone phosphate acyltransferase (DHAPAT, also
known as 1 glycerol-3-phosphate O-acyltransferase 1) and
Tafazzin (the protein product of the Barth syndrome
(TAZ) gene).
Length = 187
Score = 31.2 bits (71), Expect = 0.59
Identities = 30/153 (19%), Positives = 51/153 (33%), Gaps = 29/153 (18%)
Query: 282 VRGLSGIPSEGPVLLVGNHMLLGLEALPMVPTFVIERNILVRAIAHPMVFFNAKDGGLPD 341
V+G P GPVL V NH + L + +L+ V+ +
Sbjct: 16 VKGPPPPPGGGPVLFVSNHSSW-WDGLIL--------FLLLERGLRRDVYGLMDE---EL 63
Query: 342 LVTYDTFRIMGSVPVSAINFYKLVSSKAH-----------VLLYPGGVREAFHRKGEEYK 390
L Y F +G+ V + S + V ++P G R + ++
Sbjct: 64 LERYPFFTRLGAFSVDRDSPRSAAKSLKYVARLLSKPGSVVWIFPEGTRT----RRDKRP 119
Query: 391 LFWPESSEFVRVAAAFGGKIVPFGVVGEDDLAQ 423
L + +A G IVP + +L +
Sbjct: 120 LQF--KPGVAHLAEKAGVPIVPVALRYTFELFE 150
>gnl|CDD|153254 cd07992, LPLAT_AAK14816-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis: Unknown
AAK14816-like. Lysophospholipid acyltransferase (LPLAT)
superfamily member: acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins (acylACPs)
into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
Included in this subgroup are uncharacterized
glycerol-3-phosphate acyltransferases such as the
Plasmodium falciparum locus AAK14816 putative
acyltransferase, and similar proteins.
Length = 203
Score = 31.5 bits (72), Expect = 0.59
Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 10/56 (17%)
Query: 282 VRGLSGIPSEGPVLLVGNHM------LLGLEALPMVPTFVIE----RNILVRAIAH 327
V G +P +GPV+ +GNH LL L F+ + +N L+ +
Sbjct: 18 VVGRENVPKDGPVIFLGNHPNALIDPLLLAATLRRPVRFLAKADLFKNPLIGWLLE 73
>gnl|CDD|219611 pfam07859, Abhydrolase_3, alpha/beta hydrolase fold. This
catalytic domain is found in a very wide range of
enzymes.
Length = 207
Score = 31.0 bits (71), Expect = 0.79
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 36 RPVYLVGESLGACLALAVAARNPDMDLVLILA 67
+ + G+S G LA AVA R D L L
Sbjct: 71 SRIAVAGDSAGGNLAAAVALRARDEGLPLPAG 102
>gnl|CDD|215567 PLN03087, PLN03087, BODYGUARD 1 domain containing hydrolase;
Provisional.
Length = 481
Score = 31.7 bits (72), Expect = 0.84
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 19 LKLIERTIRSENCRSSNRPVYLVGESLGACLALAVAARNPDMDLVLILANP 69
L++IER++ R + ++V SLG LALA+A ++P L L P
Sbjct: 260 LEMIERSVLE---RYKVKSFHIVAHSLGCILALALAVKHPGAVKSLTLLAP 307
>gnl|CDD|184875 PRK14875, PRK14875, acetoin dehydrogenase E2 subunit
dihydrolipoyllysine-residue acetyltransferase;
Provisional.
Length = 371
Score = 30.7 bits (70), Expect = 1.4
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 37 PVYLVGESLGACLALAVAARNPDMDLVLILANPA 70
+LVG S+G +AL +AAR P L L PA
Sbjct: 198 RAHLVGHSMGGAVALRLAARAPQRVASLTLIAPA 231
>gnl|CDD|153251 cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis:
AGPAT-like. Lysophospholipid acyltransferase (LPLAT)
superfamily member: acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins (acylACPs)
into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
Included in this subgroup are such LPLATs as
1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT,
PlsC), Tafazzin (product of Barth syndrome gene), and
similar proteins.
Length = 184
Score = 29.9 bits (68), Expect = 1.6
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 7/41 (17%)
Query: 282 VRGLSGIPSEGPVLLVGNH------MLLGLEALPMVPTFVI 316
V GL +P +GPV++V NH ++LG ALP FV
Sbjct: 14 VEGLENLPPKGPVIIVANHQSYLDPLVLGA-ALPRPIRFVA 53
>gnl|CDD|216080 pfam00721, TMV_coat, Virus coat protein (TMV like). This family
contains coat proteins from tobamoviruses,
hordeiviruses, Tobraviruses, Furoviruses and
Potyviruses.
Length = 146
Score = 29.6 bits (67), Expect = 1.7
Identities = 31/103 (30%), Positives = 44/103 (42%), Gaps = 20/103 (19%)
Query: 156 LELLKSASAYANARLDAVKAQTLILCSGRDQLLPSEEEGDRLCRALPNCQTRRFGGGGHF 215
L LL SA V QT +GRD + ++ L P +T+RF GG +
Sbjct: 24 LNLLTSALG--------VDFQTQ---AGRDTVR---DQLSDLGLDSPVSRTKRFPAGGFY 69
Query: 216 LFLEDGV--DLVTTIKGAGYYRRGRI-VDYVSDFIPPTTIEVN 255
++L D L+T + A + I V+ VS PTT E
Sbjct: 70 VYLNDPRLAPLLTALLAALDTKNRIIEVERVS---GPTTAETL 109
>gnl|CDD|234107 TIGR03101, hydr2_PEP, exosortase A system-associated hydrolase 2.
This group of proteins are members of the alpha/beta
hydrolase superfamily. These proteins are generally
found in genomes containing the exosortase/PEP-CTERM
protein expoert system , specifically the type 1 variant
of this system described by the Genome Property
GenProp0652. When found in this context they are
invariably present in the vicinity of a second,
relatively unrelated enzyme (ortholog 1, TIGR03100) of
the same superfamily.
Length = 266
Score = 30.2 bits (68), Expect = 1.9
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 37 PVYLVGESLGACLALAVAARNPDMDLVLILANPATSFRKSLLQTI-MPIPAELMSGQ 92
PV L G LGA LAL A L+L P S ++ L Q + + + A + G+
Sbjct: 100 PVTLWGLRLGALLALDAANPLAAKCNRLVLWQPVVSGKQQLQQFLRLRLVARRLGGE 156
>gnl|CDD|220638 pfam10230, DUF2305, Uncharacterized conserved protein (DUF2305).
This family of proteins is conserved from plants to
humans. The function is unknown.
Length = 260
Score = 29.9 bits (68), Expect = 2.0
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 26 IRSENCRSSNRPVYLVGESLGACLALAVAARNP 58
+R+ + ++ + L+G S+GA +AL V R
Sbjct: 69 LRAFLPKKTDVKLILIGHSIGAYIALEVLKRLS 101
>gnl|CDD|214008 cd12809, Esterase_713_like-2, Uncharacterized enzymes similar to
novel bacterial esterase that cleaves esters on
halogenated cyclic compounds. This family contains
uncharacterized proteins similar to a novel bacterial
esterase (Alcaligenes esterase 713) with the alpha/beta
hydrolase fold but does not contain the GXSXXG
pentapeptide around the active site serine residue as
commonly seen in other enzymes of this class. Esterase
713 shows negligible sequence homology to other esterase
and lipase enzymes. It is active as a dimer and cleaves
esters on halogenated cyclic compounds though its
natural substrate is unknown.
Length = 280
Score = 29.9 bits (68), Expect = 2.3
Identities = 7/24 (29%), Positives = 9/24 (37%)
Query: 37 PVYLVGESLGACLALAVAARNPDM 60
P L+ S G A PD+
Sbjct: 172 PAILITHSQGGPFGWLAADARPDL 195
>gnl|CDD|216224 pfam00975, Thioesterase, Thioesterase domain. Peptide
synthetases are involved in the non-ribosomal synthesis
of peptide antibiotics. Next to the operons encoding
these enzymes, in almost all cases, are genes that
encode proteins that have similarity to the type II
fatty acid thioesterases of vertebrates. There are also
modules within the peptide synthetases that also share
this similarity. With respect to antibiotic production,
thioesterases are required for the addition of the last
amino acid to the peptide antibiotic, thereby forming a
cyclic antibiotic. Thioesterases (non-integrated) have
molecular masses of 25-29 kDa.
Length = 224
Score = 29.6 bits (67), Expect = 2.7
Identities = 10/20 (50%), Positives = 11/20 (55%)
Query: 37 PVYLVGESLGACLALAVAAR 56
P L G S+G LA VA R
Sbjct: 66 PYALFGHSMGGLLAFEVARR 85
>gnl|CDD|214830 smart00813, Alpha-L-AF_C, Alpha-L-arabinofuranosidase C-terminus.
This entry represents the C terminus (approximately 200
residues) of bacterial and eukaryotic
alpha-L-arabinofuranosidase. This catalyses the
hydrolysis of non-reducing terminal
alpha-L-arabinofuranosidic linkages in
L-arabinose-containing polysaccharides.
Length = 189
Score = 29.1 bits (66), Expect = 3.0
Identities = 17/84 (20%), Positives = 30/84 (35%), Gaps = 15/84 (17%)
Query: 114 DSIVKGLFLQSTIQERSQDFVAMSSYLPVLANILPKETLLWK--LELLKSASAYANARLD 171
D++ + FL ER+ D V M+SY ++ I P +L + ++ + Y
Sbjct: 22 DALAEAAFL--NGLERNSDRVKMASYAQLVNVINP--DMLTFNGGQAWRTTTYY------ 71
Query: 172 AVKAQTLILCSGRDQLLPSEEEGD 195
L +LP
Sbjct: 72 ---VFQLFSKHQGGTVLPVTISSP 92
>gnl|CDD|223067 PHA03380, PHA03380, transactivating tegument protein VP16;
Provisional.
Length = 432
Score = 29.6 bits (67), Expect = 3.9
Identities = 17/63 (26%), Positives = 23/63 (36%), Gaps = 15/63 (23%)
Query: 262 RWMVDLTSSV-----------MLSTLPDGKIVRGLSGIPSEGPVLLVGNHMLLGLEALPM 310
W DL S + +LST P + G + P+ P+ L H G E P
Sbjct: 74 TWNEDLFSCLPTNEDLYREAALLSTSPSEVVEAGDAPTPTRSPIDL-NAH---GSEPFPE 129
Query: 311 VPT 313
P
Sbjct: 130 PPA 132
>gnl|CDD|236855 PRK11126, PRK11126,
2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate
synthase; Provisional.
Length = 242
Score = 28.7 bits (65), Expect = 4.8
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 4/32 (12%)
Query: 20 KLIERTIRSENCRSSNRPVYLVGESLGACLAL 51
+L+ +T++S N P +LVG SLG +A+
Sbjct: 54 RLLSQTLQSYN----ILPYWLVGYSLGGRIAM 81
>gnl|CDD|225856 COG3319, COG3319, Thioesterase domains of type I polyketide
synthases or non-ribosomal peptide synthetases
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 257
Score = 28.9 bits (65), Expect = 4.9
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 37 PVYLVGESLGACLALAVAAR 56
P L+G SLG +A VAA+
Sbjct: 66 PYVLLGWSLGGAVAFEVAAQ 85
>gnl|CDD|145407 pfam02232, Alpha_TIF, Alpha trans-inducing protein (Alpha-TIF).
Alpha-TIF, a virion protein (VP16), is involved in
transcriptional activation of viral immediate early (IE)
promoters (alpha genes). Specificity of tegument protein
VP16 of human herpesvirus 2 for IE genes is conferred by
the 400 residue N-terminal, the 80 residue C-terminal is
responsible for transcriptional activation.
Length = 346
Score = 28.5 bits (64), Expect = 6.9
Identities = 20/63 (31%), Positives = 25/63 (39%), Gaps = 15/63 (23%)
Query: 262 RWMVDLTSSV-----------MLSTLPDGKIVRGLSGIPSEGPVLLVGNHMLLGLEALPM 310
W DL S + +LST PD I G + P+ P+ L H G E LP
Sbjct: 42 TWNEDLFSCLPTNEDLYREAKLLSTSPDEVIDAGDASTPNYSPIDL-NAH---GSEPLPS 97
Query: 311 VPT 313
P
Sbjct: 98 PPA 100
>gnl|CDD|216102 pfam00756, Esterase, Putative esterase. This family contains
Esterase D. However it is not clear if all members of
the family have the same function. This family is
related to the pfam00135 family.
Length = 245
Score = 28.2 bits (63), Expect = 8.3
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 5/32 (15%)
Query: 34 SNRPVY-----LVGESLGACLALAVAARNPDM 60
+N P L G+S+G AL +A + PD+
Sbjct: 102 ANFPTAPDGRALAGQSMGGLGALYLALKYPDL 133
>gnl|CDD|153248 cd07986, LPLAT_ACT14924-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis: Unknown
ACT14924. Lysophospholipid acyltransferase (LPLAT)
superfamily member: acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins (acylACPs)
into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
Included in this subgroup are uncharacterized
phospholipid/glycerol acyltransferases such as the
Pectobacterium carotovorum subsp. carotovorum PC1 locus
ACT14924 putative acyltransferase, and similar proteins.
Length = 210
Score = 27.6 bits (62), Expect = 9.5
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 284 GLSGIPSEGPVLLVGNHMLLGLEAL 308
GL IP +GPV++V NH L+ L
Sbjct: 14 GLENIPKDGPVVIVANHPFGILDGL 38
>gnl|CDD|214835 smart00824, PKS_TE, Thioesterase. Peptide synthetases are
involved in the non-ribosomal synthesis of peptide
antibiotics. Next to the operons encoding these
enzymes, in almost all cases, are genes that encode
proteins that have similarity to the type II fatty acid
thioesterases of vertebrates. There are also modules
within the peptide synthetases that also share this
similarity. With respect to antibiotic production,
thioesterases are required for the addition of the last
amino acid to the peptide antibiotic, thereby forming a
cyclic antibiotic. Thioesterases (non-integrated) have
molecular masses of 25-29 kDa.
Length = 212
Score = 28.0 bits (63), Expect = 9.5
Identities = 14/21 (66%), Positives = 14/21 (66%)
Query: 36 RPVYLVGESLGACLALAVAAR 56
RP LVG S G LA AVAAR
Sbjct: 64 RPFVLVGHSSGGLLAHAVAAR 84
>gnl|CDD|236668 PRK10252, entF, enterobactin synthase subunit F; Provisional.
Length = 1296
Score = 28.5 bits (64), Expect = 9.7
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 37 PVYLVGESLGACLALAVAAR 56
P +L+G SLG LA +AAR
Sbjct: 1134 PYHLLGYSLGGTLAQGIAAR 1153
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.140 0.412
Gapped
Lambda K H
0.267 0.0774 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 22,781,835
Number of extensions: 2292996
Number of successful extensions: 1994
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1984
Number of HSP's successfully gapped: 56
Length of query: 435
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 335
Effective length of database: 6,502,202
Effective search space: 2178237670
Effective search space used: 2178237670
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 60 (26.8 bits)