Query 013864
Match_columns 435
No_of_seqs 149 out of 240
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 08:09:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013864.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013864hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2751 Beclin-like protein [S 100.0 1.1E-95 2E-100 740.4 32.3 391 33-435 1-397 (447)
2 PF04111 APG6: Autophagy prote 100.0 1.3E-81 2.7E-86 627.8 23.0 260 168-435 1-269 (314)
3 PF10186 Atg14: UV radiation r 99.5 2.1E-11 4.5E-16 118.4 25.7 245 166-413 10-273 (302)
4 KOG2751 Beclin-like protein [S 98.9 3.3E-09 7.1E-14 110.0 8.6 246 103-377 36-307 (447)
5 KOG2896 UV radiation resistanc 98.8 1.3E-06 2.9E-11 89.4 21.8 123 251-386 137-284 (377)
6 PF04111 APG6: Autophagy prote 97.7 0.013 2.7E-07 59.8 22.3 214 189-419 42-312 (314)
7 COG1579 Zn-ribbon protein, pos 97.0 0.038 8.3E-07 54.6 16.0 29 177-205 11-39 (239)
8 KOG0250 DNA repair protein RAD 96.9 0.059 1.3E-06 62.4 18.7 86 218-303 380-466 (1074)
9 TIGR02169 SMC_prok_A chromosom 96.6 0.12 2.6E-06 59.3 19.0 68 232-299 435-502 (1164)
10 COG1579 Zn-ribbon protein, pos 96.1 0.37 7.9E-06 47.8 16.6 101 215-327 94-202 (239)
11 PRK03918 chromosome segregatio 96.1 0.31 6.8E-06 55.0 18.3 24 263-286 304-327 (880)
12 PF04849 HAP1_N: HAP1 N-termin 96.0 0.49 1.1E-05 48.5 17.2 158 145-303 116-306 (306)
13 TIGR02169 SMC_prok_A chromosom 96.0 0.39 8.5E-06 55.2 18.5 21 324-344 526-547 (1164)
14 PF04156 IncA: IncA protein; 95.9 0.55 1.2E-05 43.7 16.1 96 177-278 89-184 (191)
15 KOG0979 Structural maintenance 95.9 0.47 1E-05 54.9 18.3 111 170-281 197-312 (1072)
16 PRK11637 AmiB activator; Provi 95.8 0.21 4.5E-06 52.5 14.3 75 179-259 43-117 (428)
17 COG1196 Smc Chromosome segrega 95.8 0.15 3.3E-06 60.1 14.5 99 237-343 438-540 (1163)
18 PF11932 DUF3450: Protein of u 95.7 1.9 4E-05 42.3 19.5 54 300-355 166-234 (251)
19 PHA02562 46 endonuclease subun 95.6 0.31 6.8E-06 52.1 14.9 13 166-178 283-295 (562)
20 PRK11637 AmiB activator; Provi 95.3 1.2 2.7E-05 46.7 18.1 65 222-286 175-239 (428)
21 KOG0996 Structural maintenance 95.3 0.55 1.2E-05 55.2 16.3 56 224-279 535-590 (1293)
22 TIGR02168 SMC_prok_B chromosom 95.3 1.2 2.7E-05 50.9 19.2 21 395-415 1025-1045(1179)
23 PF08317 Spc7: Spc7 kinetochor 95.2 1.2 2.7E-05 45.4 17.1 46 143-188 78-127 (325)
24 PRK09039 hypothetical protein; 94.9 1.4 3E-05 45.6 16.7 17 178-194 48-64 (343)
25 PF07888 CALCOCO1: Calcium bin 94.8 1.4 3.1E-05 48.4 17.1 33 225-257 200-232 (546)
26 KOG0994 Extracellular matrix g 94.8 1 2.3E-05 53.0 16.5 80 231-313 1225-1307(1758)
27 COG4942 Membrane-bound metallo 94.8 0.8 1.7E-05 48.8 14.8 85 167-261 26-110 (420)
28 PF09789 DUF2353: Uncharacteri 94.7 2.6 5.7E-05 43.5 17.8 129 174-303 84-232 (319)
29 smart00787 Spc7 Spc7 kinetocho 94.6 3.4 7.3E-05 42.5 18.4 159 143-301 73-260 (312)
30 PF04156 IncA: IncA protein; 94.6 3.6 7.8E-05 38.2 17.2 66 180-251 85-150 (191)
31 PF10168 Nup88: Nuclear pore c 94.4 1.5 3.1E-05 49.8 16.6 169 165-356 529-708 (717)
32 KOG0250 DNA repair protein RAD 94.4 1.5 3.3E-05 51.3 16.8 76 222-297 377-453 (1074)
33 PF07888 CALCOCO1: Calcium bin 94.4 1.9 4E-05 47.5 16.7 31 216-246 205-235 (546)
34 PRK03918 chromosome segregatio 94.4 1.7 3.7E-05 49.2 17.2 8 161-168 133-140 (880)
35 PHA02562 46 endonuclease subun 94.4 1.4 3.1E-05 47.1 15.8 13 332-344 385-397 (562)
36 PF00261 Tropomyosin: Tropomyo 94.3 2.1 4.5E-05 41.8 15.6 80 222-301 125-204 (237)
37 PRK02224 chromosome segregatio 94.3 1.7 3.7E-05 49.3 17.1 16 279-294 673-688 (880)
38 TIGR01843 type_I_hlyD type I s 94.1 2 4.3E-05 43.8 15.6 21 280-300 246-266 (423)
39 PRK02224 chromosome segregatio 94.1 1.3 2.9E-05 50.2 15.6 26 147-174 433-458 (880)
40 PF10146 zf-C4H2: Zinc finger- 94.0 2.2 4.8E-05 42.1 15.0 43 215-257 37-79 (230)
41 COG1196 Smc Chromosome segrega 93.9 2.8 6.1E-05 49.7 18.3 57 143-200 148-217 (1163)
42 PRK10884 SH3 domain-containing 93.9 1.6 3.4E-05 42.4 13.5 81 176-265 93-173 (206)
43 COG4026 Uncharacterized protei 93.8 0.37 8.1E-06 47.6 9.1 74 214-287 139-212 (290)
44 PF13851 GAS: Growth-arrest sp 93.8 5.3 0.00012 38.4 17.0 26 177-202 28-53 (201)
45 PF10473 CENP-F_leu_zip: Leuci 93.8 5.2 0.00011 36.8 16.0 82 180-261 21-103 (140)
46 PRK04863 mukB cell division pr 93.8 2.3 4.9E-05 51.9 17.5 13 338-350 491-503 (1486)
47 TIGR01843 type_I_hlyD type I s 93.7 6 0.00013 40.4 18.2 22 179-200 84-105 (423)
48 TIGR02894 DNA_bind_RsfA transc 93.7 1.3 2.8E-05 41.6 12.0 17 177-193 55-71 (161)
49 KOG0995 Centromere-associated 93.6 4.6 9.9E-05 44.6 17.7 17 286-302 377-393 (581)
50 PF11559 ADIP: Afadin- and alp 93.5 4.2 9E-05 36.8 14.9 6 295-300 141-146 (151)
51 COG4372 Uncharacterized protei 93.5 3.7 8.1E-05 43.6 16.1 29 229-257 149-177 (499)
52 PF00261 Tropomyosin: Tropomyo 93.5 7 0.00015 38.2 17.4 84 217-300 127-210 (237)
53 KOG0964 Structural maintenance 93.4 6.1 0.00013 46.2 18.8 173 213-404 414-617 (1200)
54 KOG0999 Microtubule-associated 93.1 3.6 7.9E-05 45.4 15.8 32 215-246 154-185 (772)
55 KOG0999 Microtubule-associated 93.0 3.9 8.4E-05 45.2 15.9 61 218-278 108-182 (772)
56 PF08317 Spc7: Spc7 kinetochor 93.0 4.4 9.6E-05 41.4 15.9 29 175-203 148-176 (325)
57 PRK04778 septation ring format 93.0 2.6 5.6E-05 46.3 15.0 55 145-201 254-311 (569)
58 TIGR01000 bacteriocin_acc bact 92.9 4.1 8.9E-05 43.2 16.1 27 178-204 174-200 (457)
59 COG2433 Uncharacterized conser 92.9 2 4.4E-05 47.7 13.8 90 215-304 420-512 (652)
60 PF08614 ATG16: Autophagy prot 92.7 0.84 1.8E-05 43.2 9.6 23 178-200 76-98 (194)
61 PF10481 CENP-F_N: Cenp-F N-te 92.7 6 0.00013 40.3 15.7 113 178-307 20-136 (307)
62 PRK10884 SH3 domain-containing 92.7 2.9 6.2E-05 40.6 13.2 29 276-304 142-170 (206)
63 PF15619 Lebercilin: Ciliary p 92.6 6.2 0.00013 38.0 15.3 14 181-194 24-37 (194)
64 KOG0995 Centromere-associated 92.6 9.3 0.0002 42.3 18.2 30 176-205 259-288 (581)
65 PF06156 DUF972: Protein of un 92.6 0.49 1.1E-05 41.5 7.2 15 304-319 81-95 (107)
66 PF15285 BH3: Beclin-1 BH3 dom 92.6 0.04 8.6E-07 36.5 0.3 20 143-162 6-25 (25)
67 TIGR03185 DNA_S_dndD DNA sulfu 92.5 4.3 9.4E-05 45.1 16.1 67 181-255 181-247 (650)
68 PRK04863 mukB cell division pr 92.5 3 6.5E-05 50.9 15.8 37 266-302 442-478 (1486)
69 KOG4360 Uncharacterized coiled 92.5 5.5 0.00012 43.6 16.1 123 188-313 193-315 (596)
70 COG4985 ABC-type phosphate tra 92.2 4.3 9.3E-05 40.6 13.8 107 213-342 160-270 (289)
71 PF12325 TMF_TATA_bd: TATA ele 92.2 4.5 9.7E-05 36.2 12.8 32 175-206 15-46 (120)
72 KOG0243 Kinesin-like protein [ 92.1 4.3 9.3E-05 47.7 15.8 71 218-288 484-554 (1041)
73 PF12718 Tropomyosin_1: Tropom 92.1 9.3 0.0002 34.9 15.6 30 271-300 113-142 (143)
74 PF05266 DUF724: Protein of un 92.0 10 0.00022 36.3 16.0 56 235-290 128-183 (190)
75 KOG0964 Structural maintenance 92.0 5.2 0.00011 46.8 16.0 63 223-285 410-472 (1200)
76 PRK04778 septation ring format 91.9 5.4 0.00012 43.8 15.8 74 217-290 355-428 (569)
77 KOG0933 Structural maintenance 91.9 9.4 0.0002 44.9 17.9 38 264-301 813-850 (1174)
78 PF00038 Filament: Intermediat 91.7 15 0.00033 36.6 19.2 72 221-295 213-284 (312)
79 KOG2391 Vacuolar sorting prote 91.7 7 0.00015 40.8 15.3 55 189-249 224-278 (365)
80 KOG0977 Nuclear envelope prote 91.7 10 0.00022 41.9 17.4 24 396-419 353-376 (546)
81 KOG4673 Transcription factor T 91.7 15 0.00032 41.9 18.5 52 153-206 388-439 (961)
82 PRK01156 chromosome segregatio 91.6 6.4 0.00014 45.1 16.6 35 268-302 411-445 (895)
83 PF07926 TPR_MLP1_2: TPR/MLP1/ 91.4 10 0.00022 33.9 16.7 33 267-299 99-131 (132)
84 PF15035 Rootletin: Ciliary ro 91.4 13 0.00028 35.4 15.9 81 176-256 16-113 (182)
85 PF06120 Phage_HK97_TLTM: Tail 91.2 8 0.00017 39.8 15.1 73 180-253 38-110 (301)
86 TIGR00606 rad50 rad50. This fa 91.1 12 0.00025 45.2 18.7 39 212-250 824-862 (1311)
87 PF10146 zf-C4H2: Zinc finger- 91.1 13 0.00028 36.8 16.0 68 228-302 36-103 (230)
88 PRK09039 hypothetical protein; 91.0 12 0.00025 38.9 16.2 26 175-200 80-105 (343)
89 PRK01156 chromosome segregatio 90.8 9.2 0.0002 43.8 16.9 34 153-188 152-185 (895)
90 PF10212 TTKRSYEDQ: Predicted 90.7 13 0.00028 40.9 16.8 78 222-302 439-516 (518)
91 TIGR00606 rad50 rad50. This fa 90.6 5.5 0.00012 47.9 15.4 15 311-325 1149-1164(1311)
92 COG4372 Uncharacterized protei 90.6 16 0.00034 39.1 16.7 33 225-257 117-149 (499)
93 PF10211 Ax_dynein_light: Axon 90.5 16 0.00036 34.8 15.9 67 226-298 122-188 (189)
94 TIGR01010 BexC_CtrB_KpsE polys 90.4 23 0.0005 36.3 19.1 126 174-300 168-305 (362)
95 TIGR02680 conserved hypothetic 90.4 7.9 0.00017 47.0 16.4 10 150-159 180-189 (1353)
96 PF10498 IFT57: Intra-flagella 90.3 11 0.00023 39.6 15.5 45 214-258 249-293 (359)
97 PF09726 Macoilin: Transmembra 90.0 18 0.00038 41.3 17.8 30 175-204 417-446 (697)
98 KOG0161 Myosin class II heavy 89.9 17 0.00037 45.7 18.7 14 68-81 656-671 (1930)
99 PF10473 CENP-F_leu_zip: Leuci 89.9 12 0.00026 34.5 13.6 22 182-203 9-30 (140)
100 PF09726 Macoilin: Transmembra 89.8 7.3 0.00016 44.2 14.6 21 233-253 547-567 (697)
101 KOG0804 Cytoplasmic Zn-finger 89.7 17 0.00036 39.4 16.3 8 66-73 182-189 (493)
102 TIGR03752 conj_TIGR03752 integ 89.7 4.7 0.0001 43.7 12.4 74 227-300 69-143 (472)
103 PF08614 ATG16: Autophagy prot 89.6 9.2 0.0002 36.2 13.2 11 274-284 166-176 (194)
104 PF09755 DUF2046: Uncharacteri 89.5 20 0.00042 37.2 16.1 7 269-275 181-187 (310)
105 KOG1853 LIS1-interacting prote 89.5 16 0.00034 37.1 15.0 79 225-306 53-134 (333)
106 COG2433 Uncharacterized conser 89.4 6.8 0.00015 43.7 13.5 77 217-293 429-508 (652)
107 TIGR02977 phageshock_pspA phag 89.4 18 0.00039 34.9 15.2 45 151-197 3-52 (219)
108 PF09789 DUF2353: Uncharacteri 89.2 26 0.00056 36.4 16.9 167 180-356 13-223 (319)
109 PF00038 Filament: Intermediat 89.2 25 0.00054 35.0 17.9 35 266-300 103-137 (312)
110 PF12325 TMF_TATA_bd: TATA ele 89.2 16 0.00035 32.7 16.4 43 215-257 21-63 (120)
111 PF05384 DegS: Sensor protein 89.0 20 0.00043 33.6 16.0 65 215-279 46-118 (159)
112 KOG2264 Exostosin EXT1L [Signa 89.0 3 6.5E-05 46.2 10.4 71 228-312 90-160 (907)
113 KOG0161 Myosin class II heavy 89.0 24 0.00053 44.4 19.1 33 235-267 954-986 (1930)
114 PF09755 DUF2046: Uncharacteri 88.9 32 0.00068 35.7 17.3 58 177-234 136-202 (310)
115 COG5185 HEC1 Protein involved 88.8 22 0.00049 38.9 16.5 26 142-172 153-178 (622)
116 KOG1962 B-cell receptor-associ 88.8 6.6 0.00014 38.6 11.7 50 222-271 149-198 (216)
117 KOG0982 Centrosomal protein Nu 88.7 15 0.00032 39.6 15.0 29 274-302 361-389 (502)
118 PF09730 BicD: Microtubule-ass 88.6 19 0.00041 41.1 16.7 36 215-250 81-116 (717)
119 PF15070 GOLGA2L5: Putative go 88.3 21 0.00045 40.2 16.6 23 337-359 199-221 (617)
120 PF12718 Tropomyosin_1: Tropom 88.3 20 0.00044 32.7 16.7 28 223-250 34-61 (143)
121 PF06160 EzrA: Septation ring 88.2 18 0.00038 39.9 15.9 181 170-355 276-487 (560)
122 KOG0980 Actin-binding protein 88.1 39 0.00085 39.5 18.7 79 224-302 438-516 (980)
123 TIGR03185 DNA_S_dndD DNA sulfu 88.1 35 0.00075 38.1 18.3 43 216-258 427-469 (650)
124 PF09730 BicD: Microtubule-ass 87.9 20 0.00044 40.9 16.4 78 215-292 67-147 (717)
125 PF11180 DUF2968: Protein of u 87.8 18 0.00039 35.0 13.7 76 228-303 109-184 (192)
126 KOG2072 Translation initiation 87.7 18 0.00039 41.9 15.7 147 151-301 520-698 (988)
127 PRK09841 cryptic autophosphory 87.7 55 0.0012 37.1 22.4 119 172-301 263-398 (726)
128 PF00769 ERM: Ezrin/radixin/mo 87.7 14 0.0003 36.6 13.5 39 222-260 59-97 (246)
129 PRK00409 recombination and DNA 87.6 11 0.00024 43.2 14.4 21 20-40 299-323 (782)
130 KOG0288 WD40 repeat protein Ti 87.5 18 0.00038 38.9 14.6 107 180-286 10-117 (459)
131 TIGR01069 mutS2 MutS2 family p 87.2 8.8 0.00019 44.0 13.3 20 21-40 295-318 (771)
132 KOG0933 Structural maintenance 87.1 31 0.00068 40.8 17.3 16 72-87 571-586 (1174)
133 PF04849 HAP1_N: HAP1 N-termin 87.0 31 0.00067 35.7 15.7 85 213-297 163-265 (306)
134 COG4942 Membrane-bound metallo 87.0 13 0.00028 40.0 13.4 12 291-302 116-127 (420)
135 TIGR02894 DNA_bind_RsfA transc 87.0 11 0.00024 35.6 11.5 34 226-259 99-132 (161)
136 PF07106 TBPIP: Tat binding pr 87.0 19 0.00042 33.1 13.2 70 170-239 66-138 (169)
137 KOG0977 Nuclear envelope prote 87.0 26 0.00056 38.9 16.0 23 180-202 110-132 (546)
138 TIGR01069 mutS2 MutS2 family p 86.9 9.6 0.00021 43.7 13.4 9 395-403 701-709 (771)
139 PF10168 Nup88: Nuclear pore c 86.9 52 0.0011 37.6 19.0 26 273-298 639-664 (717)
140 PF06005 DUF904: Protein of un 86.8 16 0.00035 29.9 11.5 43 220-262 7-49 (72)
141 PF11932 DUF3450: Protein of u 86.6 25 0.00053 34.5 14.4 16 403-418 220-235 (251)
142 PRK10698 phage shock protein P 86.4 34 0.00074 33.4 16.5 50 246-295 100-149 (222)
143 PF04012 PspA_IM30: PspA/IM30 86.4 31 0.00067 32.9 18.2 51 246-296 99-149 (221)
144 PF05700 BCAS2: Breast carcino 86.2 5.8 0.00013 38.5 9.8 45 215-259 173-217 (221)
145 TIGR01000 bacteriocin_acc bact 85.7 53 0.0011 34.9 17.9 24 179-202 100-123 (457)
146 COG5185 HEC1 Protein involved 85.4 63 0.0014 35.6 17.7 55 221-275 334-391 (622)
147 PF12329 TMF_DNA_bd: TATA elem 85.3 15 0.00032 30.1 10.2 28 227-254 15-42 (74)
148 KOG0996 Structural maintenance 85.2 39 0.00085 40.6 17.0 7 17-23 20-26 (1293)
149 PF06005 DUF904: Protein of un 85.2 19 0.00042 29.5 11.6 35 224-258 18-52 (72)
150 PF05701 WEMBL: Weak chloropla 85.1 53 0.0012 35.9 17.5 7 336-342 421-427 (522)
151 PF10186 Atg14: UV radiation r 85.1 39 0.00085 32.9 18.5 142 217-362 70-225 (302)
152 PF05266 DUF724: Protein of un 84.9 38 0.00082 32.5 15.7 108 185-292 64-178 (190)
153 PRK11519 tyrosine kinase; Prov 84.9 76 0.0016 36.0 22.3 31 174-204 265-295 (719)
154 PF10267 Tmemb_cc2: Predicted 84.8 20 0.00043 38.2 13.6 29 176-204 212-240 (395)
155 PRK08032 fliD flagellar cappin 84.8 3.8 8.2E-05 43.9 8.4 51 235-288 410-460 (462)
156 PRK13169 DNA replication intia 84.7 3.7 8E-05 36.3 6.9 15 304-319 78-92 (110)
157 PRK00409 recombination and DNA 84.6 20 0.00043 41.2 14.5 20 142-161 388-407 (782)
158 PF05667 DUF812: Protein of un 84.6 50 0.0011 37.0 17.1 95 242-348 423-517 (594)
159 KOG0804 Cytoplasmic Zn-finger 84.5 37 0.0008 36.9 15.3 16 281-296 429-444 (493)
160 PRK09841 cryptic autophosphory 84.4 38 0.00082 38.4 16.5 25 225-249 305-329 (726)
161 PF11559 ADIP: Afadin- and alp 84.4 31 0.00067 31.1 13.6 31 266-296 119-149 (151)
162 TIGR03017 EpsF chain length de 84.3 50 0.0011 34.5 16.3 19 177-195 255-273 (444)
163 PF15254 CCDC14: Coiled-coil d 84.1 34 0.00073 39.5 15.5 77 222-301 467-543 (861)
164 TIGR02231 conserved hypothetic 84.0 19 0.00042 38.9 13.5 35 267-301 139-173 (525)
165 TIGR03752 conj_TIGR03752 integ 83.9 12 0.00026 40.7 11.6 73 227-299 62-135 (472)
166 TIGR02231 conserved hypothetic 83.9 14 0.0003 40.0 12.3 24 276-299 141-164 (525)
167 KOG3647 Predicted coiled-coil 83.9 41 0.0009 34.5 14.6 33 143-175 53-85 (338)
168 KOG1029 Endocytic adaptor prot 83.9 12 0.00027 43.0 12.0 11 363-373 695-706 (1118)
169 KOG0612 Rho-associated, coiled 83.7 30 0.00065 41.6 15.4 20 397-416 751-770 (1317)
170 PF14662 CCDC155: Coiled-coil 83.7 45 0.00097 32.4 16.3 44 214-257 71-114 (193)
171 TIGR03007 pepcterm_ChnLen poly 83.5 66 0.0014 34.2 21.6 62 241-302 320-384 (498)
172 PF00769 ERM: Ezrin/radixin/mo 83.4 50 0.0011 32.7 16.8 76 222-297 45-120 (246)
173 KOG1899 LAR transmembrane tyro 83.3 22 0.00049 40.1 13.5 14 365-378 329-342 (861)
174 KOG4438 Centromere-associated 83.2 50 0.0011 35.7 15.5 111 218-354 174-286 (446)
175 TIGR00570 cdk7 CDK-activating 83.1 26 0.00057 36.2 13.2 14 165-178 26-39 (309)
176 TIGR02680 conserved hypothetic 83.1 47 0.001 40.6 17.3 23 178-200 232-261 (1353)
177 PRK06798 fliD flagellar cappin 82.8 5 0.00011 43.0 8.3 54 232-288 380-433 (440)
178 PF05278 PEARLI-4: Arabidopsis 82.7 19 0.00042 36.5 11.9 154 143-303 93-265 (269)
179 KOG4674 Uncharacterized conser 82.7 61 0.0013 40.8 17.9 119 178-299 131-250 (1822)
180 COG1382 GimC Prefoldin, chaper 82.6 25 0.00054 31.7 11.3 25 179-203 16-40 (119)
181 KOG0239 Kinesin (KAR3 subfamil 82.3 51 0.0011 37.5 16.2 62 222-283 232-293 (670)
182 PRK10361 DNA recombination pro 82.0 85 0.0018 34.4 18.1 30 222-251 90-119 (475)
183 PRK11519 tyrosine kinase; Prov 82.0 35 0.00076 38.6 14.9 33 268-300 365-397 (719)
184 KOG0971 Microtubule-associated 81.8 1.2E+02 0.0026 36.0 23.1 71 222-294 281-353 (1243)
185 TIGR03007 pepcterm_ChnLen poly 81.7 53 0.0011 35.0 15.5 69 176-244 161-231 (498)
186 PF14662 CCDC155: Coiled-coil 81.6 54 0.0012 31.9 18.4 43 215-257 86-128 (193)
187 PF13851 GAS: Growth-arrest sp 81.4 53 0.0011 31.6 17.3 75 218-292 49-133 (201)
188 PF15619 Lebercilin: Ciliary p 81.3 53 0.0011 31.6 17.5 31 269-299 153-183 (194)
189 KOG4360 Uncharacterized coiled 81.3 48 0.001 36.6 14.8 71 215-285 231-301 (596)
190 PF02403 Seryl_tRNA_N: Seryl-t 81.3 22 0.00049 30.1 10.3 39 215-253 27-65 (108)
191 PF11414 Suppressor_APC: Adeno 81.3 24 0.00051 29.9 10.1 54 216-269 6-61 (84)
192 PF12128 DUF3584: Protein of u 81.2 68 0.0015 38.6 17.6 11 36-46 55-65 (1201)
193 PF12128 DUF3584: Protein of u 81.1 73 0.0016 38.4 17.9 15 339-353 777-791 (1201)
194 cd00632 Prefoldin_beta Prefold 80.9 28 0.00061 29.7 10.8 37 220-256 66-102 (105)
195 TIGR02338 gimC_beta prefoldin, 80.8 28 0.00061 30.1 10.8 36 220-255 70-105 (110)
196 PF03961 DUF342: Protein of un 80.7 15 0.00032 39.2 10.9 87 162-248 320-406 (451)
197 KOG4673 Transcription factor T 80.7 59 0.0013 37.3 15.5 21 331-351 656-682 (961)
198 PF10234 Cluap1: Clusterin-ass 80.5 39 0.00084 34.3 13.1 33 219-251 185-217 (267)
199 PRK11281 hypothetical protein; 80.2 51 0.0011 39.6 15.9 27 178-204 82-108 (1113)
200 KOG1937 Uncharacterized conser 80.0 98 0.0021 33.9 16.6 68 230-297 344-427 (521)
201 PF10234 Cluap1: Clusterin-ass 80.0 68 0.0015 32.6 14.7 30 221-250 173-202 (267)
202 KOG0612 Rho-associated, coiled 79.9 21 0.00046 42.8 12.4 22 395-416 670-691 (1317)
203 KOG0980 Actin-binding protein 79.7 97 0.0021 36.4 17.1 10 320-329 563-572 (980)
204 TIGR00634 recN DNA repair prot 79.4 1E+02 0.0022 33.9 17.0 93 216-313 307-402 (563)
205 TIGR01005 eps_transp_fam exopo 79.4 50 0.0011 37.3 15.1 29 272-300 375-403 (754)
206 TIGR00998 8a0101 efflux pump m 79.3 28 0.0006 34.7 11.8 15 182-196 79-93 (334)
207 PF06160 EzrA: Septation ring 79.3 1E+02 0.0022 34.1 17.0 154 143-302 164-335 (560)
208 KOG0979 Structural maintenance 79.3 58 0.0013 38.6 15.4 36 218-253 263-298 (1072)
209 PF01920 Prefoldin_2: Prefoldi 79.2 12 0.00027 31.0 7.9 76 180-255 16-100 (106)
210 PF09787 Golgin_A5: Golgin sub 79.2 95 0.0021 33.9 16.6 19 178-196 223-241 (511)
211 PF08172 CASP_C: CASP C termin 79.1 23 0.00049 35.4 10.9 39 266-304 86-124 (248)
212 PF05149 Flagellar_rod: Parafl 79.0 82 0.0018 32.4 15.9 113 217-350 52-164 (289)
213 COG4026 Uncharacterized protei 78.9 58 0.0012 32.7 13.3 12 150-161 73-84 (290)
214 PF08826 DMPK_coil: DMPK coile 78.9 13 0.00029 29.7 7.4 42 216-257 17-58 (61)
215 PF15066 CAGE1: Cancer-associa 78.6 96 0.0021 34.0 15.9 38 258-295 488-525 (527)
216 PF09738 DUF2051: Double stran 78.5 53 0.0012 33.8 13.6 28 220-247 108-135 (302)
217 PRK12704 phosphodiesterase; Pr 78.5 1.1E+02 0.0024 33.7 18.4 13 308-320 213-225 (520)
218 KOG4643 Uncharacterized coiled 78.5 1.1E+02 0.0023 36.6 17.1 13 181-193 413-425 (1195)
219 PF05701 WEMBL: Weak chloropla 78.2 1.1E+02 0.0024 33.6 16.8 34 266-299 407-440 (522)
220 PF10174 Cast: RIM-binding pro 78.1 1.3E+02 0.0029 34.9 17.9 32 222-253 334-365 (775)
221 KOG0982 Centrosomal protein Nu 78.1 79 0.0017 34.4 14.9 10 294-303 410-419 (502)
222 PRK03947 prefoldin subunit alp 78.0 50 0.0011 29.4 12.9 21 183-203 6-26 (140)
223 PF03962 Mnd1: Mnd1 family; I 78.0 38 0.00083 32.3 11.7 26 225-250 104-129 (188)
224 PF03962 Mnd1: Mnd1 family; I 77.8 27 0.00059 33.3 10.6 30 221-250 66-95 (188)
225 PF07111 HCR: Alpha helical co 77.5 1.4E+02 0.0031 34.3 17.4 85 216-300 175-276 (739)
226 PF03961 DUF342: Protein of un 77.3 13 0.00029 39.5 9.3 75 224-299 334-408 (451)
227 COG1345 FliD Flagellar capping 77.0 8.6 0.00019 41.9 7.9 54 237-300 428-481 (483)
228 PF12777 MT: Microtubule-bindi 77.0 9.4 0.0002 39.3 7.9 63 232-294 222-284 (344)
229 COG1730 GIM5 Predicted prefold 76.9 54 0.0012 30.4 11.9 85 175-259 19-136 (145)
230 PRK07737 fliD flagellar cappin 76.9 10 0.00022 41.3 8.4 51 235-288 445-495 (501)
231 KOG0240 Kinesin (SMY1 subfamil 76.8 1.3E+02 0.0029 33.7 18.6 65 223-287 413-484 (607)
232 PF05667 DUF812: Protein of un 76.5 69 0.0015 35.9 14.8 26 178-203 330-355 (594)
233 KOG3800 Predicted E3 ubiquitin 76.4 13 0.00029 38.0 8.5 15 164-178 22-36 (300)
234 TIGR01005 eps_transp_fam exopo 76.4 81 0.0017 35.7 15.6 28 174-201 192-219 (754)
235 PF05911 DUF869: Plant protein 75.9 1.5E+02 0.0033 34.4 17.6 37 265-301 147-183 (769)
236 PRK06664 fliD flagellar hook-a 75.9 8.7 0.00019 43.3 7.8 54 233-289 602-655 (661)
237 cd07674 F-BAR_FCHO1 The F-BAR 75.8 87 0.0019 31.0 17.0 18 320-337 244-261 (261)
238 PF09744 Jnk-SapK_ap_N: JNK_SA 75.7 71 0.0015 29.9 13.1 54 221-274 86-139 (158)
239 PRK10929 putative mechanosensi 75.7 1.5E+02 0.0033 35.8 18.0 18 332-349 260-277 (1109)
240 PF07106 TBPIP: Tat binding pr 75.6 58 0.0013 30.0 11.9 29 222-250 77-105 (169)
241 PF15294 Leu_zip: Leucine zipp 75.5 75 0.0016 32.5 13.5 79 215-293 130-228 (278)
242 PF15070 GOLGA2L5: Putative go 75.0 86 0.0019 35.4 15.1 9 399-407 345-353 (617)
243 TIGR03017 EpsF chain length de 74.9 95 0.0021 32.4 14.8 31 174-204 169-199 (444)
244 COG4477 EzrA Negative regulato 74.8 79 0.0017 35.2 14.3 107 240-355 377-490 (570)
245 COG3879 Uncharacterized protei 74.8 36 0.00078 34.2 10.9 50 278-329 137-186 (247)
246 PF10481 CENP-F_N: Cenp-F N-te 74.6 54 0.0012 33.6 12.1 28 273-300 88-115 (307)
247 KOG4572 Predicted DNA-binding 74.6 1E+02 0.0022 36.3 15.3 55 258-312 994-1048(1424)
248 PF05911 DUF869: Plant protein 74.5 51 0.0011 38.1 13.4 17 337-353 734-750 (769)
249 TIGR02449 conserved hypothetic 74.5 28 0.00061 28.2 8.3 30 222-251 5-34 (65)
250 PRK11578 macrolide transporter 74.4 50 0.0011 33.8 12.3 22 279-300 157-178 (370)
251 PF05010 TACC: Transforming ac 74.3 90 0.002 30.5 17.5 22 221-242 73-94 (207)
252 cd07593 BAR_MUG137_fungi The B 74.3 66 0.0014 31.5 12.5 58 227-300 145-202 (215)
253 PF05529 Bap31: B-cell recepto 74.3 28 0.00061 32.7 9.7 33 225-257 155-187 (192)
254 COG0419 SbcC ATPase involved i 74.0 1.6E+02 0.0036 34.2 17.6 30 171-200 166-195 (908)
255 KOG0972 Huntingtin interacting 73.8 87 0.0019 32.6 13.4 44 214-257 256-299 (384)
256 PRK09343 prefoldin subunit bet 73.7 56 0.0012 29.0 10.9 32 222-253 76-107 (121)
257 KOG0976 Rho/Rac1-interacting s 73.5 1.3E+02 0.0028 35.4 15.8 51 148-199 227-282 (1265)
258 PF07926 TPR_MLP1_2: TPR/MLP1/ 72.7 70 0.0015 28.5 16.4 33 258-290 97-129 (132)
259 KOG2129 Uncharacterized conser 72.7 35 0.00075 36.9 10.7 28 62-90 15-42 (552)
260 KOG2077 JNK/SAPK-associated pr 72.4 1.8E+02 0.0038 33.0 17.1 122 154-282 274-422 (832)
261 KOG3119 Basic region leucine z 72.4 22 0.00048 35.7 9.0 57 214-270 205-261 (269)
262 PF14712 Snapin_Pallidin: Snap 72.2 54 0.0012 27.0 12.3 78 223-301 13-92 (92)
263 PRK08724 fliD flagellar cappin 72.1 18 0.0004 40.9 9.1 51 234-287 620-670 (673)
264 KOG2391 Vacuolar sorting prote 72.0 37 0.00079 35.7 10.5 14 26-39 66-80 (365)
265 PRK13182 racA polar chromosome 72.0 37 0.0008 32.2 9.8 70 228-306 82-151 (175)
266 PF12761 End3: Actin cytoskele 72.0 71 0.0015 31.1 11.8 22 275-296 162-183 (195)
267 COG4717 Uncharacterized conser 71.9 1.7E+02 0.0036 34.7 16.4 98 224-321 774-879 (984)
268 PF05557 MAD: Mitotic checkpoi 71.8 6 0.00013 44.6 5.3 124 175-298 398-535 (722)
269 PF10037 MRP-S27: Mitochondria 71.7 1.4E+02 0.0029 32.4 15.1 31 243-273 370-400 (429)
270 KOG4460 Nuclear pore complex, 71.6 1.8E+02 0.0039 32.8 17.9 29 270-298 659-687 (741)
271 PLN02678 seryl-tRNA synthetase 71.5 38 0.00082 36.7 11.0 73 215-291 31-103 (448)
272 COG1340 Uncharacterized archae 71.5 1.3E+02 0.0028 31.1 16.4 82 216-297 164-245 (294)
273 KOG1029 Endocytic adaptor prot 71.5 1.3E+02 0.0027 35.3 15.1 10 402-411 602-611 (1118)
274 KOG4403 Cell surface glycoprot 71.4 1.3E+02 0.0028 32.9 14.6 45 272-316 346-391 (575)
275 KOG4674 Uncharacterized conser 71.2 1.1E+02 0.0025 38.5 15.8 21 180-200 63-83 (1822)
276 PF02388 FemAB: FemAB family; 71.2 13 0.00028 39.1 7.4 41 275-315 275-315 (406)
277 PF04012 PspA_IM30: PspA/IM30 70.9 98 0.0021 29.5 14.6 46 250-295 96-141 (221)
278 PF07061 Swi5: Swi5; InterPro 70.9 16 0.00035 30.7 6.4 10 263-272 43-52 (83)
279 KOG0978 E3 ubiquitin ligase in 70.8 2E+02 0.0044 33.1 16.8 74 229-302 543-616 (698)
280 PF14197 Cep57_CLD_2: Centroso 70.8 56 0.0012 26.6 10.0 32 269-300 36-67 (69)
281 KOG4593 Mitotic checkpoint pro 70.3 2.1E+02 0.0045 33.0 17.1 68 180-247 423-491 (716)
282 COG3206 GumC Uncharacterized p 70.3 1.3E+02 0.0027 32.1 14.5 43 233-279 344-386 (458)
283 cd00890 Prefoldin Prefoldin is 70.2 57 0.0012 28.0 10.0 37 219-255 89-125 (129)
284 PF09763 Sec3_C: Exocyst compl 70.0 90 0.0019 35.2 14.0 111 174-304 3-113 (701)
285 PF09304 Cortex-I_coil: Cortex 70.0 80 0.0017 28.1 13.3 6 237-242 50-55 (107)
286 smart00787 Spc7 Spc7 kinetocho 69.5 1.4E+02 0.0031 30.8 17.7 21 275-295 227-247 (312)
287 PF06248 Zw10: Centromere/kine 69.4 1.1E+02 0.0024 33.8 14.3 33 171-203 9-46 (593)
288 PRK06800 fliH flagellar assemb 69.3 70 0.0015 31.3 11.0 7 350-356 139-145 (228)
289 PF13514 AAA_27: AAA domain 69.2 2.5E+02 0.0054 33.6 17.9 27 178-204 745-771 (1111)
290 PF15188 CCDC-167: Coiled-coil 68.9 18 0.00039 30.7 6.3 24 280-303 43-66 (85)
291 PF14197 Cep57_CLD_2: Centroso 68.9 62 0.0013 26.3 10.4 18 273-290 47-64 (69)
292 KOG0993 Rab5 GTPase effector R 68.9 66 0.0014 34.8 11.7 47 212-258 136-182 (542)
293 PRK10929 putative mechanosensi 68.8 2.3E+02 0.0051 34.3 17.5 41 269-309 282-322 (1109)
294 PF09403 FadA: Adhesion protei 68.7 92 0.002 28.2 11.8 7 252-258 73-79 (126)
295 TIGR02977 phageshock_pspA phag 68.4 1.2E+02 0.0025 29.3 14.6 50 246-295 100-149 (219)
296 KOG0946 ER-Golgi vesicle-tethe 68.3 85 0.0018 36.7 13.1 56 221-276 661-716 (970)
297 PRK13729 conjugal transfer pil 68.2 17 0.00038 39.5 7.5 13 364-376 211-223 (475)
298 COG3074 Uncharacterized protei 68.1 69 0.0015 26.6 10.5 31 236-267 37-67 (79)
299 cd00584 Prefoldin_alpha Prefol 68.1 74 0.0016 27.8 10.4 27 177-203 14-40 (129)
300 KOG0978 E3 ubiquitin ligase in 67.8 2.3E+02 0.0051 32.6 17.4 82 223-304 544-625 (698)
301 KOG1003 Actin filament-coating 67.8 1.3E+02 0.0028 29.6 16.5 69 233-301 104-172 (205)
302 KOG1899 LAR transmembrane tyro 67.8 91 0.002 35.5 12.9 22 151-172 83-105 (861)
303 PF13514 AAA_27: AAA domain 67.7 2.4E+02 0.0052 33.7 17.4 23 331-353 1019-1041(1111)
304 cd07666 BAR_SNX7 The Bin/Amphi 67.4 1.4E+02 0.003 29.9 17.7 56 145-200 87-152 (243)
305 KOG4571 Activating transcripti 67.4 21 0.00046 36.6 7.6 42 223-264 247-288 (294)
306 PF10779 XhlA: Haemolysin XhlA 67.3 58 0.0013 26.1 8.8 53 214-266 3-55 (71)
307 COG4477 EzrA Negative regulato 67.3 2.1E+02 0.0046 32.0 15.4 26 174-199 283-308 (570)
308 PF14257 DUF4349: Domain of un 67.1 1.2E+02 0.0026 29.8 12.7 63 275-346 164-226 (262)
309 PF09728 Taxilin: Myosin-like 67.1 1.6E+02 0.0034 30.3 15.7 21 390-410 260-280 (309)
310 KOG0971 Microtubule-associated 66.9 1.2E+02 0.0025 36.1 13.8 39 221-259 400-438 (1243)
311 PF02841 GBP_C: Guanylate-bind 66.7 1.5E+02 0.0032 29.9 13.6 31 171-201 150-184 (297)
312 PF10805 DUF2730: Protein of u 66.7 44 0.00095 29.0 8.5 32 268-299 67-98 (106)
313 PF11365 DUF3166: Protein of u 66.5 18 0.00038 31.5 5.9 89 212-303 3-92 (96)
314 PF14257 DUF4349: Domain of un 66.3 40 0.00086 33.1 9.2 50 150-200 105-156 (262)
315 KOG0018 Structural maintenance 65.9 2.3E+02 0.0051 34.1 16.2 60 233-292 418-477 (1141)
316 PF10211 Ax_dynein_light: Axon 65.9 1.3E+02 0.0027 28.8 14.5 55 220-274 123-178 (189)
317 KOG0163 Myosin class VI heavy 65.8 1.7E+02 0.0036 34.4 14.6 10 194-203 904-913 (1259)
318 TIGR02473 flagell_FliJ flagell 65.8 91 0.002 27.1 15.1 89 179-270 30-121 (141)
319 PRK05431 seryl-tRNA synthetase 65.7 57 0.0012 34.8 10.8 36 216-251 27-62 (425)
320 KOG0243 Kinesin-like protein [ 65.6 2.5E+02 0.0054 33.8 16.5 29 223-251 482-510 (1041)
321 PF02996 Prefoldin: Prefoldin 65.6 61 0.0013 27.6 9.2 80 178-257 5-117 (120)
322 PLN03188 kinesin-12 family pro 65.6 2.9E+02 0.0063 34.0 17.1 18 259-276 1172-1190(1320)
323 KOG4302 Microtubule-associated 65.3 52 0.0011 37.4 10.8 40 222-261 101-140 (660)
324 PF05529 Bap31: B-cell recepto 65.2 49 0.0011 31.1 9.2 8 189-196 99-106 (192)
325 TIGR00414 serS seryl-tRNA synt 65.2 62 0.0013 34.5 11.0 36 216-251 29-64 (418)
326 KOG1103 Predicted coiled-coil 65.1 1.3E+02 0.0028 32.2 12.8 36 226-261 240-275 (561)
327 KOG0288 WD40 repeat protein Ti 64.7 1.6E+02 0.0035 31.9 13.6 14 343-356 206-219 (459)
328 PF07058 Myosin_HC-like: Myosi 64.3 65 0.0014 33.6 10.3 25 178-202 2-26 (351)
329 PF13166 AAA_13: AAA domain 64.2 2.4E+02 0.0052 31.4 18.2 24 326-354 494-517 (712)
330 TIGR00634 recN DNA repair prot 64.1 2E+02 0.0042 31.7 14.8 11 401-411 480-490 (563)
331 PF15397 DUF4618: Domain of un 64.0 1.7E+02 0.0037 29.7 16.8 43 215-257 65-107 (258)
332 KOG0962 DNA repair protein RAD 63.8 3.1E+02 0.0067 33.8 17.0 24 213-236 822-845 (1294)
333 TIGR01730 RND_mfp RND family e 63.8 48 0.001 32.4 9.2 20 281-300 110-129 (322)
334 PF09798 LCD1: DNA damage chec 63.6 40 0.00086 38.3 9.5 60 229-294 2-61 (654)
335 PF07303 Occludin_ELL: Occludi 63.4 46 0.00099 28.9 7.9 71 226-301 24-94 (101)
336 KOG4603 TBP-1 interacting prot 63.3 1.3E+02 0.0028 29.1 11.4 34 218-251 80-113 (201)
337 PF09731 Mitofilin: Mitochondr 63.0 2.4E+02 0.0051 30.9 18.6 10 394-403 536-545 (582)
338 KOG2196 Nuclear porin [Nuclear 62.8 1.8E+02 0.0039 29.5 15.5 42 215-256 118-159 (254)
339 KOG0946 ER-Golgi vesicle-tethe 62.4 2.1E+02 0.0045 33.7 14.7 24 145-168 584-609 (970)
340 PF05130 FlgN: FlgN protein; 62.3 98 0.0021 26.3 10.2 60 188-249 10-69 (143)
341 PRK00106 hypothetical protein; 62.3 2.6E+02 0.0056 31.2 18.2 21 225-245 102-122 (535)
342 KOG4302 Microtubule-associated 62.1 2.4E+02 0.0051 32.4 15.1 16 144-159 15-30 (660)
343 PF12777 MT: Microtubule-bindi 62.0 1.3E+02 0.0028 31.0 12.4 26 277-302 79-104 (344)
344 KOG1103 Predicted coiled-coil 62.0 89 0.0019 33.3 11.0 28 145-172 57-85 (561)
345 PF14817 HAUS5: HAUS augmin-li 62.0 1.1E+02 0.0025 34.6 12.6 48 226-273 81-128 (632)
346 COG4717 Uncharacterized conser 61.8 2.6E+02 0.0057 33.1 15.4 39 318-357 811-849 (984)
347 PF15372 DUF4600: Domain of un 61.7 1.3E+02 0.0028 27.5 12.4 39 227-268 54-92 (129)
348 TIGR02971 heterocyst_DevB ABC 61.5 1.8E+02 0.0039 29.0 14.5 20 278-297 184-203 (327)
349 PF02403 Seryl_tRNA_N: Seryl-t 61.4 83 0.0018 26.6 9.2 6 182-187 35-40 (108)
350 PRK10698 phage shock protein P 61.4 1.7E+02 0.0036 28.6 14.6 22 173-194 28-49 (222)
351 PRK00888 ftsB cell division pr 61.3 28 0.0006 30.3 6.3 31 221-251 31-61 (105)
352 PF10224 DUF2205: Predicted co 61.3 50 0.0011 27.8 7.5 42 226-268 18-59 (80)
353 PRK10636 putative ABC transpor 61.0 52 0.0011 36.7 9.9 23 231-253 563-585 (638)
354 PF15290 Syntaphilin: Golgi-lo 60.5 1.8E+02 0.0038 30.2 12.5 23 237-259 107-131 (305)
355 TIGR03319 YmdA_YtgF conserved 60.4 2.7E+02 0.0058 30.7 18.2 37 229-265 92-128 (514)
356 TIGR03794 NHPM_micro_HlyD NHPM 60.3 2.2E+02 0.0048 29.8 17.6 47 280-327 227-273 (421)
357 KOG4001 Axonemal dynein light 60.1 1.1E+02 0.0024 30.4 10.6 32 222-253 183-214 (259)
358 PF03980 Nnf1: Nnf1 ; InterPr 59.9 1.1E+02 0.0024 26.1 10.5 77 176-252 14-108 (109)
359 COG1340 Uncharacterized archae 59.8 2.2E+02 0.0047 29.5 19.4 18 225-242 132-149 (294)
360 KOG3091 Nuclear pore complex, 59.8 1.1E+02 0.0023 33.8 11.5 23 181-203 339-361 (508)
361 PF05276 SH3BP5: SH3 domain-bi 59.5 2E+02 0.0042 28.8 14.2 62 238-299 149-217 (239)
362 PF12761 End3: Actin cytoskele 59.4 76 0.0017 30.9 9.4 83 219-301 98-195 (195)
363 KOG3564 GTPase-activating prot 59.4 71 0.0015 35.2 10.0 82 172-259 17-98 (604)
364 PF11180 DUF2968: Protein of u 59.2 1.8E+02 0.0039 28.4 13.8 56 223-278 125-180 (192)
365 PLN02372 violaxanthin de-epoxi 59.1 1.4E+02 0.003 32.4 12.0 24 249-272 407-430 (455)
366 PF15290 Syntaphilin: Golgi-lo 59.0 2.2E+02 0.0049 29.4 13.8 75 222-305 106-182 (305)
367 PRK12765 flagellar capping pro 58.8 47 0.001 37.1 9.0 57 233-292 534-590 (595)
368 PF09731 Mitofilin: Mitochondr 58.7 2.8E+02 0.0061 30.4 17.0 11 149-159 225-235 (582)
369 KOG4809 Rab6 GTPase-interactin 58.6 3.1E+02 0.0068 30.9 15.0 19 153-171 214-232 (654)
370 PRK05771 V-type ATP synthase s 58.6 41 0.00089 37.5 8.6 34 223-256 92-125 (646)
371 PF02050 FliJ: Flagellar FliJ 58.6 1E+02 0.0022 25.2 14.5 86 178-267 14-102 (123)
372 PF14723 SSFA2_C: Sperm-specif 58.6 1.3E+02 0.0027 29.0 10.4 20 184-203 106-125 (179)
373 KOG0249 LAR-interacting protei 58.5 2.3E+02 0.005 32.9 14.1 38 221-258 220-257 (916)
374 PF07889 DUF1664: Protein of u 58.4 1.5E+02 0.0031 27.0 11.8 56 245-300 68-123 (126)
375 KOG4005 Transcription factor X 58.3 1.1E+02 0.0024 31.0 10.4 14 397-410 213-226 (292)
376 KOG3091 Nuclear pore complex, 58.3 2.4E+02 0.0053 31.2 13.8 36 168-203 330-365 (508)
377 COG3074 Uncharacterized protei 58.1 1.1E+02 0.0024 25.5 10.7 28 232-259 26-53 (79)
378 PRK14160 heat shock protein Gr 58.1 1.9E+02 0.0042 28.4 12.1 48 226-273 49-96 (211)
379 PF08647 BRE1: BRE1 E3 ubiquit 58.1 1.2E+02 0.0025 25.8 12.8 64 183-252 3-66 (96)
380 PF01496 V_ATPase_I: V-type AT 57.9 7.3 0.00016 44.2 2.7 24 288-311 154-177 (759)
381 PF05010 TACC: Transforming ac 57.8 1.9E+02 0.0042 28.3 16.3 78 222-299 109-194 (207)
382 PF07716 bZIP_2: Basic region 57.8 39 0.00085 25.6 5.9 32 222-253 23-54 (54)
383 PF06632 XRCC4: DNA double-str 57.8 1.8E+02 0.0039 30.6 12.5 24 263-286 184-207 (342)
384 PF05377 FlaC_arch: Flagella a 57.6 48 0.001 26.1 6.3 34 221-254 4-37 (55)
385 PF03148 Tektin: Tektin family 57.5 2.5E+02 0.0055 29.5 16.8 29 274-302 325-353 (384)
386 PLN02320 seryl-tRNA synthetase 57.3 84 0.0018 34.7 10.4 33 217-249 93-125 (502)
387 PF05557 MAD: Mitotic checkpoi 57.2 3.5 7.6E-05 46.4 0.0 21 181-201 310-330 (722)
388 PRK03947 prefoldin subunit alp 56.9 1.4E+02 0.0031 26.5 13.5 22 277-298 112-133 (140)
389 TIGR03495 phage_LysB phage lys 56.9 1.6E+02 0.0035 27.1 11.3 36 279-317 67-102 (135)
390 PF06120 Phage_HK97_TLTM: Tail 56.8 2.4E+02 0.0051 29.3 13.0 28 174-201 86-113 (301)
391 PRK10869 recombination and rep 56.8 3.1E+02 0.0067 30.4 14.8 12 400-411 469-480 (553)
392 PF02994 Transposase_22: L1 tr 56.6 34 0.00074 35.9 7.1 16 399-414 294-309 (370)
393 PRK10246 exonuclease subunit S 56.6 3.7E+02 0.008 32.1 16.3 25 176-200 184-208 (1047)
394 PF14817 HAUS5: HAUS augmin-li 56.6 3.5E+02 0.0076 30.8 15.4 40 317-358 471-514 (632)
395 PF07195 FliD_C: Flagellar hoo 56.4 39 0.00085 32.9 7.1 46 229-277 191-236 (239)
396 KOG4196 bZIP transcription fac 55.9 46 0.001 30.6 6.8 30 222-251 79-108 (135)
397 KOG4796 RNA polymerase II elon 55.8 25 0.00054 39.0 6.1 48 227-274 518-566 (604)
398 KOG1853 LIS1-interacting prote 55.5 2.5E+02 0.0054 28.8 17.0 9 318-326 221-229 (333)
399 PF09403 FadA: Adhesion protei 55.3 1.1E+02 0.0024 27.7 9.2 20 279-298 88-107 (126)
400 PF12126 DUF3583: Protein of u 55.2 2.6E+02 0.0057 29.1 12.8 37 222-258 51-88 (324)
401 PF10267 Tmemb_cc2: Predicted 55.1 3E+02 0.0064 29.6 13.8 20 338-357 344-363 (395)
402 KOG4677 Golgi integral membran 54.8 2E+02 0.0044 31.6 12.4 89 230-328 322-422 (554)
403 KOG2196 Nuclear porin [Nuclear 54.8 2.4E+02 0.0053 28.5 13.7 29 275-303 221-249 (254)
404 KOG2264 Exostosin EXT1L [Signa 54.7 1.2E+02 0.0026 34.4 10.9 42 217-258 93-134 (907)
405 KOG0962 DNA repair protein RAD 54.5 3.6E+02 0.0079 33.3 15.6 23 296-318 947-969 (1294)
406 PRK11578 macrolide transporter 54.5 1.9E+02 0.0041 29.6 12.1 26 274-299 159-184 (370)
407 COG4985 ABC-type phosphate tra 54.3 1E+02 0.0022 31.2 9.4 25 175-203 160-184 (289)
408 TIGR01010 BexC_CtrB_KpsE polys 54.3 1.9E+02 0.0041 29.6 12.0 121 174-294 175-306 (362)
409 PF13166 AAA_13: AAA domain 54.1 3.5E+02 0.0076 30.1 18.8 8 292-299 464-471 (712)
410 PF07200 Mod_r: Modifier of ru 54.0 1.6E+02 0.0036 26.3 14.0 63 184-253 8-70 (150)
411 PF04977 DivIC: Septum formati 54.0 42 0.00092 26.4 5.8 29 222-250 22-50 (80)
412 PRK05689 fliJ flagellar biosyn 53.2 1.7E+02 0.0036 26.1 15.4 90 181-273 35-127 (147)
413 KOG4787 Uncharacterized conser 53.1 1.2E+02 0.0027 34.3 10.7 73 178-251 461-542 (852)
414 KOG2077 JNK/SAPK-associated pr 53.1 1.1E+02 0.0024 34.5 10.4 48 213-260 325-372 (832)
415 PF02388 FemAB: FemAB family; 53.0 95 0.0021 32.8 9.8 15 189-203 214-228 (406)
416 COG3206 GumC Uncharacterized p 53.0 3.1E+02 0.0067 29.2 15.6 33 268-300 368-400 (458)
417 PRK11281 hypothetical protein; 52.9 84 0.0018 37.9 10.2 16 335-350 283-298 (1113)
418 PF08286 Spc24: Spc24 subunit 52.4 5 0.00011 35.2 0.2 41 221-261 3-43 (118)
419 smart00338 BRLZ basic region l 52.3 61 0.0013 25.2 6.3 30 228-257 30-59 (65)
420 PRK10636 putative ABC transpor 52.2 86 0.0019 35.0 9.8 26 216-241 562-587 (638)
421 PF01920 Prefoldin_2: Prefoldi 52.1 1.3E+02 0.0029 24.7 10.9 28 274-301 70-97 (106)
422 PRK09343 prefoldin subunit bet 51.8 1.7E+02 0.0037 25.9 12.0 22 180-201 4-25 (121)
423 PRK10476 multidrug resistance 51.8 2.7E+02 0.0059 28.2 14.1 22 181-202 84-105 (346)
424 PF06008 Laminin_I: Laminin Do 51.7 2.5E+02 0.0054 27.7 15.6 28 262-289 181-208 (264)
425 PRK03598 putative efflux pump 51.6 2.6E+02 0.0056 28.1 12.3 89 210-300 74-172 (331)
426 PF04977 DivIC: Septum formati 51.6 32 0.00069 27.1 4.7 31 227-257 20-50 (80)
427 PF13863 DUF4200: Domain of un 51.5 1.6E+02 0.0035 25.4 13.7 93 213-305 21-113 (126)
428 KOG1760 Molecular chaperone Pr 51.4 2E+02 0.0043 26.4 10.1 75 179-253 33-117 (131)
429 KOG0018 Structural maintenance 51.4 4.1E+02 0.0089 32.2 15.0 35 167-202 724-763 (1141)
430 PF00170 bZIP_1: bZIP transcri 51.3 88 0.0019 24.3 7.1 41 220-260 22-62 (64)
431 KOG0796 Spliceosome subunit [R 51.3 2.7E+02 0.0059 29.1 12.3 32 172-203 56-89 (319)
432 COG0172 SerS Seryl-tRNA synthe 50.7 2.1E+02 0.0046 31.0 12.0 93 215-315 27-119 (429)
433 KOG1854 Mitochondrial inner me 50.5 4.4E+02 0.0095 30.2 16.0 26 348-373 474-500 (657)
434 PF08172 CASP_C: CASP C termin 50.4 2.8E+02 0.006 27.8 13.1 82 178-259 1-121 (248)
435 PRK06800 fliH flagellar assemb 49.9 1.7E+02 0.0037 28.7 9.9 25 220-244 41-65 (228)
436 PRK10869 recombination and rep 49.9 4E+02 0.0086 29.5 18.0 77 232-313 318-397 (553)
437 PF03245 Phage_lysis: Bacterio 49.8 1.4E+02 0.003 26.7 8.9 40 238-277 14-53 (125)
438 KOG3850 Predicted membrane pro 49.7 3.7E+02 0.008 29.1 13.9 20 338-357 393-412 (455)
439 PF06785 UPF0242: Uncharacteri 49.0 3.6E+02 0.0078 28.7 15.5 15 145-159 45-59 (401)
440 PF13747 DUF4164: Domain of un 48.9 1.7E+02 0.0036 24.8 11.7 26 215-240 37-62 (89)
441 COG4467 Regulator of replicati 48.7 32 0.0007 30.6 4.6 15 304-319 82-96 (114)
442 PF05837 CENP-H: Centromere pr 48.7 1.8E+02 0.0039 25.2 10.5 40 220-259 6-45 (106)
443 COG3883 Uncharacterized protei 48.5 3.1E+02 0.0068 27.9 19.7 27 178-204 33-59 (265)
444 KOG4438 Centromere-associated 48.3 4E+02 0.0086 29.1 13.3 16 400-415 331-346 (446)
445 TIGR03545 conserved hypothetic 48.3 3.2E+02 0.007 30.5 13.3 60 190-251 191-257 (555)
446 KOG3595 Dyneins, heavy chain [ 48.3 5.9E+02 0.013 31.6 16.5 52 152-203 676-727 (1395)
447 KOG4005 Transcription factor X 48.2 3.1E+02 0.0068 27.9 12.2 16 184-199 60-75 (292)
448 PF14988 DUF4515: Domain of un 48.2 2.7E+02 0.0058 27.1 15.8 25 170-194 16-40 (206)
449 KOG0994 Extracellular matrix g 48.1 6.3E+02 0.014 31.3 17.4 22 145-166 1520-1542(1758)
450 PF03954 Lectin_N: Hepatic lec 48.0 1.2E+02 0.0027 28.0 8.4 27 264-290 110-136 (138)
451 PF09340 NuA4: Histone acetylt 48.0 43 0.00092 27.9 5.0 33 231-266 2-34 (80)
452 KOG3990 Uncharacterized conser 48.0 1E+02 0.0022 31.5 8.4 13 13-25 120-132 (305)
453 KOG2129 Uncharacterized conser 47.8 4.1E+02 0.009 29.1 16.9 23 220-242 256-278 (552)
454 PRK14127 cell division protein 47.5 73 0.0016 28.3 6.6 53 213-265 33-102 (109)
455 PF09738 DUF2051: Double stran 47.1 3.5E+02 0.0075 28.0 12.5 85 214-298 81-165 (302)
456 PLN02678 seryl-tRNA synthetase 47.0 1.6E+02 0.0034 32.0 10.4 28 223-250 77-104 (448)
457 PF12072 DUF3552: Domain of un 46.4 2.7E+02 0.0059 26.6 13.9 84 213-299 60-143 (201)
458 KOG4460 Nuclear pore complex, 46.4 4.9E+02 0.011 29.6 17.4 42 139-182 525-569 (741)
459 PRK10722 hypothetical protein; 46.3 78 0.0017 31.9 7.4 33 230-262 175-207 (247)
460 PF09321 DUF1978: Domain of un 46.1 3.3E+02 0.0071 27.5 14.7 67 243-310 152-228 (241)
461 PF05622 HOOK: HOOK protein; 45.9 6.8 0.00015 44.1 0.0 25 276-300 394-418 (713)
462 KOG3758 Uncharacterized conser 45.7 5.1E+02 0.011 29.6 15.7 133 153-302 16-152 (655)
463 PF11488 Lge1: Transcriptional 45.7 1.7E+02 0.0037 24.1 8.5 25 273-299 53-77 (80)
464 PF12999 PRKCSH-like: Glucosid 45.6 79 0.0017 30.3 7.0 69 166-240 100-176 (176)
465 PF10498 IFT57: Intra-flagella 45.6 3.9E+02 0.0085 28.2 14.1 15 19-33 48-62 (359)
466 KOG2891 Surface glycoprotein [ 45.4 3.8E+02 0.0082 28.0 12.2 98 182-282 315-434 (445)
467 PF14362 DUF4407: Domain of un 45.2 2.4E+02 0.0053 28.2 10.9 20 271-290 194-213 (301)
468 COG5283 Phage-related tail pro 45.0 6.8E+02 0.015 30.8 16.5 77 178-254 24-108 (1213)
469 PF07407 Seadorna_VP6: Seadorn 44.8 1.3E+02 0.0028 31.8 8.8 13 395-407 242-254 (420)
470 PF01519 DUF16: Protein of unk 44.8 2.2E+02 0.0048 25.1 9.3 18 283-300 84-101 (102)
471 PF04124 Dor1: Dor1-like famil 44.7 3.7E+02 0.0079 27.6 13.8 14 332-345 146-159 (338)
472 PF04899 MbeD_MobD: MbeD/MobD 44.6 1.8E+02 0.0038 23.9 8.7 35 266-300 28-62 (70)
473 PF10458 Val_tRNA-synt_C: Valy 44.5 1.4E+02 0.003 23.6 7.2 22 182-203 3-24 (66)
474 PF12329 TMF_DNA_bd: TATA elem 44.5 1.7E+02 0.0038 23.8 10.9 27 227-253 36-62 (74)
475 PF05008 V-SNARE: Vesicle tran 44.4 1.6E+02 0.0034 23.5 7.7 28 231-258 25-52 (79)
476 PF07851 TMPIT: TMPIT-like pro 44.4 2.7E+02 0.0059 29.2 11.3 75 228-302 1-83 (330)
477 PRK05431 seryl-tRNA synthetase 44.4 1.7E+02 0.0038 31.2 10.2 70 175-247 34-103 (425)
478 PF01486 K-box: K-box region; 44.2 2E+02 0.0042 24.3 11.0 87 178-277 14-100 (100)
479 PF15188 CCDC-167: Coiled-coil 44.2 1.3E+02 0.0028 25.7 7.3 61 183-246 5-65 (85)
480 COG3334 Uncharacterized conser 44.0 2.7E+02 0.0059 27.1 10.5 70 212-302 58-127 (192)
481 KOG3859 Septins (P-loop GTPase 43.8 3.8E+02 0.0082 28.2 11.9 82 186-279 322-404 (406)
482 TIGR02971 heterocyst_DevB ABC 43.8 1.8E+02 0.0038 29.1 9.7 74 229-302 53-126 (327)
483 PF10205 KLRAQ: Predicted coil 43.3 2.3E+02 0.0051 25.0 11.5 74 215-288 3-76 (102)
484 PF04799 Fzo_mitofusin: fzo-li 43.3 2.3E+02 0.0051 27.1 9.7 65 221-289 102-167 (171)
485 KOG1265 Phospholipase C [Lipid 43.0 6.7E+02 0.015 30.2 15.4 125 174-298 1039-1164(1189)
486 PF15369 KIAA1328: Uncharacter 43.0 3.7E+02 0.008 28.3 11.8 105 213-317 11-119 (328)
487 PRK00888 ftsB cell division pr 42.9 56 0.0012 28.4 5.2 32 227-258 30-61 (105)
488 PF08647 BRE1: BRE1 E3 ubiquit 42.9 2.1E+02 0.0046 24.3 11.6 79 222-300 1-79 (96)
489 PF07407 Seadorna_VP6: Seadorn 42.7 1.2E+02 0.0027 32.0 8.4 63 232-306 33-95 (420)
490 PF06428 Sec2p: GDP/GTP exchan 42.7 37 0.0008 29.6 4.0 79 224-302 1-80 (100)
491 PHA03161 hypothetical protein; 42.7 92 0.002 29.2 6.8 87 230-332 53-146 (150)
492 TIGR00293 prefoldin, archaeal 42.6 2.3E+02 0.0049 24.6 11.2 82 175-256 12-125 (126)
493 PRK10361 DNA recombination pro 42.5 5.1E+02 0.011 28.6 17.7 111 178-301 38-154 (475)
494 KOG0963 Transcription factor/C 42.4 5.7E+02 0.012 29.2 15.1 116 178-302 244-359 (629)
495 PF01576 Myosin_tail_1: Myosin 42.3 8.4 0.00018 44.6 0.0 118 178-301 133-250 (859)
496 PF13600 DUF4140: N-terminal d 42.2 57 0.0012 27.4 5.1 35 224-258 70-104 (104)
497 PRK15136 multidrug efflux syst 42.2 4.3E+02 0.0092 27.7 13.3 91 210-300 92-185 (390)
498 TIGR00999 8a0102 Membrane Fusi 42.0 1.6E+02 0.0036 28.0 8.8 87 231-321 16-103 (265)
499 PF11471 Sugarporin_N: Maltopo 42.0 46 0.00099 26.4 4.1 31 229-259 30-60 (60)
500 KOG4572 Predicted DNA-binding 41.8 2.7E+02 0.0059 33.0 11.4 117 178-300 956-1072(1424)
No 1
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-95 Score=740.38 Aligned_cols=391 Identities=52% Similarity=0.849 Sum_probs=361.0
Q ss_pred EeecCcchhhccccccCCcCCCccccccccccccCCCCCceeeccCCCC-CCCCCCCCCCCCCCCcccccCCCCCccceE
Q 013864 33 IVGVDSYADKYLNDSSRSTMHGSSIHASNSVLGSTRMDNSFVVLPKQRP-QSHGVPPRPRGSSAQSEASQSGKAMDESFV 111 (435)
Q Consensus 33 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~d~s~vvl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~eS~v 111 (435)
++|+|+|..+++..|..+--.+.++|+..++.++++|+++++|+|.+.+ ++.+.|+++|++.. +++. ++.++.+|||
T Consensus 1 ~~g~~~s~~~~~q~~~~~~r~~~~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~t~~~~a~~-~~~~-~~~~~~~~~~ 78 (447)
T KOG2751|consen 1 IVGVDSSANKFFQVPFPCQRCLQPIHLDNSLLGSDRMDISELVLPLHKPPQSQGGPTRPRGASS-GDAT-SGKTPQESSV 78 (447)
T ss_pred CcccccccccccCCChhhhhccchhhhhhhhccccccchhhccCCCCCCccccCCCccCccccC-cccc-CCcchhhccc
Confidence 5899999999999998888889999999999999999999999999965 99999999999887 5555 8899999999
Q ss_pred EEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchHHHHHHHHHhhcCCcccCCcchHHHHHHHHHHHHHHHHHHHHH
Q 013864 112 VIYKSESASDGGGPHIPPPEGGTNGPMQPNNSGFHSTITVLKRAFEIATSQTQVEQPLCLECMRVLSDKLDKEVDDVTRD 191 (435)
Q Consensus 112 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~i~~l~~lFdILSs~s~IDhPLC~eC~d~Lle~Ld~qle~~~~E 191 (435)
+++...+..+....+-++...+..++.+.+.+++++++++++++|+|||++++||||+|.||++.|++.|+++++.+++|
T Consensus 79 ~~~~~~p~r~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~f~i~~~qt~~d~PlC~eC~d~l~~~ld~e~~~~~~e 158 (447)
T KOG2751|consen 79 VVYFSPPVRDSDTEHNLSFELGENGSDGSNTKTLSATINVLTRLFDILSSQTQVDHPLCEECMDVLLNKLDKEVEDAEDE 158 (447)
T ss_pred eecccCcccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988766655555555555555556677899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 013864 192 IEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNF 271 (435)
Q Consensus 192 ~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~~eE~~~w~e~n~~ 271 (435)
+++|++|+++|+++..+ .+++++.+|++.++.||++|.++|++++++.++++.++.+++.+..++.++|.+||++||.+
T Consensus 159 ~~~Y~~~l~~Le~~~~~-~~~~~~~~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~~~~~~~e~~~~~~~ey~~~ 237 (447)
T KOG2751|consen 159 VDTYKACLQRLEQQNQD-VSEEDLLKELKNLKEEEERLLQQLEELEKEEAELDHQLKELEFKAERLNEEEDQYWREYNNF 237 (447)
T ss_pred HHHHHHHHHHHhhcCcc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999977543 37889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCceeeeecCCeeeeccccCCCCCCCCCChhHHHHHHHHHHHHHHH
Q 013864 272 QFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHT 351 (435)
Q Consensus 272 q~qL~~~~ee~~sl~~q~~~~~~qLdkLrktNV~Nd~F~I~hdG~fGTINGlRLGrlp~~~V~W~EINAAwGQ~~LLL~t 351 (435)
++++.+++++++|+++|+++++.||++|++|||||.+|||||+|+|||||||||||+|.+||+|+||||||||+||||++
T Consensus 238 ~~q~~~~~del~Sle~q~~~s~~qldkL~ktNv~n~~F~I~~~G~fgtIN~FRLG~lp~~pVew~EINAA~GQ~vLLL~~ 317 (447)
T KOG2751|consen 238 QRQLIEHQDELDSLEAQIEYSQAQLDKLRKTNVFNATFHIWHDGEFGTINNFRLGRLPSVPVEWDEINAAWGQTVLLLHT 317 (447)
T ss_pred HHhhhcccchHHHHHHHHHHHHHHHHHHHhhhhhhheeeEeecccccccccceeccccCCCcCHHHHHHHhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCCCceeEEecCCcceeeccCC---ceeecc--cCCCCcccccchHHHHHHHHHHHHHHHHHhhcCcCCCCCC
Q 013864 352 MCQYFRPKFPYRIKIIPMGSYPRIMDSNN---NTYELF--GPVNLFWSTRYDKAMTLFLSCLKDFAEFANSKDQENNIPP 426 (435)
Q Consensus 352 la~kl~~kF~~~YkLvPmGS~SkI~~~~~---~~~eLy--g~~~lf~~~kFD~AMvaFLdCL~Q~~e~v~~~d~~~~~p~ 426 (435)
|++|+|++|+ +|+||||||||+|++... ..++|| |+.+|||++|||+||+|||+||+||+++++++|+
T Consensus 318 l~~kig~~~~-~y~lvp~GshSyI~~~~~~~~~el~l~~sgg~~~f~~tkfD~amvafLd~L~qf~~e~~~k~~------ 390 (447)
T KOG2751|consen 318 LANKIGLNFV-RYRLVPMGSHSYIKKRMVNLPYELPLFQSGGLKFFWSTKFDKAMVAFLDCLKQFADELEKKDT------ 390 (447)
T ss_pred HHHhcCcccc-eeeeecccchhHHHHhccCCCccchhhcCCCceeeeccccCHHHHHHHHHHHHHHHHHHhcCc------
Confidence 9999999999 999999999999997643 457777 5568999999999999999999999999999984
Q ss_pred CCCCCCCCC
Q 013864 427 DKCFKLPYK 435 (435)
Q Consensus 427 ~~~f~LPYk 435 (435)
.|++||+
T Consensus 391 --~~~lPy~ 397 (447)
T KOG2751|consen 391 --SFNLPYD 397 (447)
T ss_pred --ccCCcch
Confidence 4777874
No 2
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=100.00 E-value=1.3e-81 Score=627.80 Aligned_cols=260 Identities=45% Similarity=0.847 Sum_probs=184.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 168 PLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAEL 247 (435)
Q Consensus 168 PLC~eC~d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el 247 (435)
|||.||++.|++.|+++++++++|+++|..||++++.+.....+..++.+++.+|++||++|.++|++||++++++++|+
T Consensus 1 PlC~eC~~~l~~~l~~~~~~~~~E~~~Y~~fL~~l~~~~~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el 80 (314)
T PF04111_consen 1 PLCQECTDLLLEQLDKQLEQAEKERDTYQEFLKKLEEESDSEEDIEELEEELEKLEQEEEELLQELEELEKEREELDQEL 80 (314)
T ss_dssp -----------------------------------------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999853322223466788999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCceeeeecCCeeeeccccCCC
Q 013864 248 KELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGR 327 (435)
Q Consensus 248 ~~le~e~~~L~~eE~~~w~e~n~~q~qL~~~~ee~~sl~~q~~~~~~qLdkLrktNV~Nd~F~I~hdG~fGTINGlRLGr 327 (435)
.+++.+.++++++|++||+++|.+++++.+++++++++++||+++++||++|+||||||++|||||||+|||||||||||
T Consensus 81 ~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~ktNv~n~~F~I~hdG~fGTINGlRLGr 160 (314)
T PF04111_consen 81 EELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLRKTNVYNDTFHIWHDGPFGTINGLRLGR 160 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT--TTTTT--EEEETTEEEETTEEE--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhceeeEeecCCeeeECCeeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHhhcCCCCCCceeEEecCCcceeeccC----CceeecccCC-----CCcccccch
Q 013864 328 LPKIPVEWDEINAAWGQACLLLHTMCQYFRPKFPYRIKIIPMGSYPRIMDSN----NNTYELFGPV-----NLFWSTRYD 398 (435)
Q Consensus 328 lp~~~V~W~EINAAwGQ~~LLL~tla~kl~~kF~~~YkLvPmGS~SkI~~~~----~~~~eLyg~~-----~lf~~~kFD 398 (435)
+|++||+|+||||||||+||||++||++++++|+ +|+|+||||||+|++.. +.+|+|||++ ++|++++||
T Consensus 161 l~~~~V~W~EINAA~Gq~~LLL~~la~~l~~~f~-~y~l~P~Gs~S~I~~~~~~~~~~~~~ly~~~~~~~~~~f~~~~Fd 239 (314)
T PF04111_consen 161 LPNVPVEWNEINAAWGQTALLLQTLAKKLNFKFQ-RYRLVPMGSFSKIEKLEGDKDKTTYPLYSSGSFSLGRLFSSRKFD 239 (314)
T ss_dssp BTTB---HHHHHHHHHHHHHHHHHHHHHCT---S-SEEEE--GGG-EEEECS---TCEEEESS--SS----GGG--SHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHHHhCCCcc-cceeEecCCCCEEEEeccCCCCeEEecccCCCchhhhhhhhcchH
Confidence 9999999999999999999999999999999999 99999999999999875 5789999876 469999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCcCCCCCCCCCCCCCCC
Q 013864 399 KAMTLFLSCLKDFAEFANSKDQENNIPPDKCFKLPYK 435 (435)
Q Consensus 399 ~AMvaFLdCL~Q~~e~v~~~d~~~~~p~~~~f~LPYk 435 (435)
.||+|||+||+||++|+.++||. .|+|||+
T Consensus 240 ~am~~~L~~~~q~~~~~~~~~~~-------~~~lPy~ 269 (314)
T PF04111_consen 240 KAMVAFLDCLQQLAEFVEKRDPQ-------SFELPYK 269 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH------------SS-
T ss_pred HHHHHHHHHHHHHHHHHHhcCCc-------cccccee
Confidence 99999999999999999998852 5899995
No 3
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=99.48 E-value=2.1e-11 Score=118.43 Aligned_cols=245 Identities=18% Similarity=0.214 Sum_probs=140.4
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 166 EQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEAR--DVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEV 243 (435)
Q Consensus 166 DhPLC~eC~d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~--~~~~ee~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l 243 (435)
-..+|..|+..=+-.++..+.++..+.+....-++.+-.... .......+..+...++.....+..+++.+.++.++.
T Consensus 10 ~~~~C~~C~~~~L~~~~~~l~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~ 89 (302)
T PF10186_consen 10 RRFYCANCVNNRLLELRSELQQLKEENEELRRRIEEILESDSNGQLLEIQQLKREIEELRERLERLRERIERLRKRIEQK 89 (302)
T ss_pred CCeECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356899999999999999999999999888775544322100 000112222333334444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hcccCCCceeeee--------
Q 013864 244 NAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLK--RTNVLNDAFPIWH-------- 313 (435)
Q Consensus 244 ~~el~~le~e~~~L~~eE~~~w~e~n~~q~qL~~~~ee~~sl~~q~~~~~~qLdkLr--ktNV~Nd~F~I~h-------- 313 (435)
.+.+.++..+.......-..+.........++....++......++.....++..-| ...-+...|.|..
T Consensus 90 r~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~r~~l~~~l~~ifpI~~~~~~~~~~ 169 (302)
T PF10186_consen 90 RERLEELRESLEQRRSRLSASQDLVESRQEQLEELQNELEERKQRLSQLQSQLARRRRQLIQELSEIFPIEQVSSPRRPS 169 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCceeecccccCC
Confidence 444444433333322211122222222233333333333333333333222222211 1222456899932
Q ss_pred ---cCCeeeeccccCCCCCC-CCCChhHHHHHHHHHHHHHHHHHhhcCCCCCCceeEEecCCcceeecc---CCceeecc
Q 013864 314 ---DGEFGTINNFRLGRLPK-IPVEWDEINAAWGQACLLLHTMCQYFRPKFPYRIKIIPMGSYPRIMDS---NNNTYELF 386 (435)
Q Consensus 314 ---dG~fGTINGlRLGrlp~-~~V~W~EINAAwGQ~~LLL~tla~kl~~kF~~~YkLvPmGS~SkI~~~---~~~~~eLy 386 (435)
.+.|. |.|++|-...+ ...+=.+|+||+|.++.|+..+|.+|++. ++|++.|+||+|.|.+. ....++.+
T Consensus 170 ~~~~~~~~-I~~~~lp~~~~~~~~~~~~isaALgyvahlv~lls~yL~v~--Lpy~i~~~gs~s~i~d~~~~~~~~~~~~ 246 (302)
T PF10186_consen 170 DSSSSEYT-ICGLPLPNSRDFNSLPDEEISAALGYVAHLVSLLSRYLGVP--LPYPITPSGSRSTIIDFSPSIDRPLPSL 246 (302)
T ss_pred CCCCCCee-ecCcccCCCcccccCCHHHHHHHHHHHHHHHHHHHHHhCCC--CCCCcccCccccchhhcccccCCcchhh
Confidence 35665 99998876532 34556899999999999999999999765 58999999999999871 11112211
Q ss_pred cCCCCcccccchHHHHHHHHHHHHHHH
Q 013864 387 GPVNLFWSTRYDKAMTLFLSCLKDFAE 413 (435)
Q Consensus 387 g~~~lf~~~kFD~AMvaFLdCL~Q~~e 413 (435)
....--...+|..|+..+-.-+.|++.
T Consensus 247 ~~~~~~~~~~f~~~v~lLn~nI~~L~~ 273 (302)
T PF10186_consen 247 SYESGVDRQRFEYAVFLLNKNIAQLCF 273 (302)
T ss_pred hccccccHHHHHHHHHHHHHHHHHHHH
Confidence 111111246899999999999999996
No 4
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=98.91 E-value=3.3e-09 Score=109.96 Aligned_cols=246 Identities=11% Similarity=-0.009 Sum_probs=142.3
Q ss_pred CCCCccceEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchHHHHHHHHHhhcCCcccCCcchHHHHHHHHHHHH
Q 013864 103 GKAMDESFVVIYKSESASDGGGPHIPPPEGGTNGPMQPNNSGFHSTITVLKRAFEIATSQTQVEQPLCLECMRVLSDKLD 182 (435)
Q Consensus 103 ~~~~~eS~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~i~~l~~lFdILSs~s~IDhPLC~eC~d~Lle~Ld 182 (435)
+..|.|+++.++.. .+++++-+..+..+.++....-.....++....+-...|+-.++++.++||.|..|...+...+-
T Consensus 36 ~~~~~~~~~p~~~~-~~~~~~~t~~~~a~~~~~~~~~~~~~~~~~~~~~~p~r~~~~~~~~~~~~~~~~~~~~~~~~~s~ 114 (447)
T KOG2751|consen 36 RMDISELVLPLHKP-PQSQGGPTRPRGASSGDATSGKTPQESSVVVYFSPPVRDSDTEHNLSFELGENGSDGSNTKTLSA 114 (447)
T ss_pred ccchhhccCCCCCC-ccccCCCccCccccCccccCCcchhhccceecccCcccccccccccccccccccchhhhhHHHHH
Confidence 34555666666554 23333222222222122221122334566677777888999999999999999999998877544
Q ss_pred HHHHHHHHHHHHHHH----------HHHHH----hcccccCCCHHH-HHHHHHHHHH-----HHHHHHHHHHHHHHHHHH
Q 013864 183 KEVDDVTRDIEAYEA----------CLQRL----EGEARDVLSEAD-FLKEKLKIEE-----EERKLEAAIEETEKQNAE 242 (435)
Q Consensus 183 ~qle~~~~E~d~Y~~----------fL~~L----~~~~~~~~~ee~-l~~e~~~Le~-----EE~~L~~eL~~lE~e~~~ 242 (435)
+=...+....-.|.. |.+.| ..+......+-+ ..+-+..||+ ++..+..|++++..|..+
T Consensus 115 ~~~~~~~~f~i~~~qt~~d~PlC~eC~d~l~~~ld~e~~~~~~e~~~Y~~~l~~Le~~~~~~~~~~~~~e~~~l~~eE~~ 194 (447)
T KOG2751|consen 115 TINVLTRLFDILSSQTQVDHPLCEECMDVLLNKLDKEVEDAEDEVDTYKACLQRLEQQNQDVSEEDLLKELKNLKEEEER 194 (447)
T ss_pred HHHHHHHHHHHhhccCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHH
Confidence 333332222222211 11111 111100000000 0111111211 344455555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCcee------eeecCC
Q 013864 243 VNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFP------IWHDGE 316 (435)
Q Consensus 243 l~~el~~le~e~~~L~~eE~~~w~e~n~~q~qL~~~~ee~~sl~~q~~~~~~qLdkLrktNV~Nd~F~------I~hdG~ 316 (435)
+-+++++++++...++.++.+. -...++.+++.++|.+-|. |-|+|.
T Consensus 195 L~q~lk~le~~~~~l~~~l~e~---------------------------~~~~~~~~e~~~~~~~ey~~~~~q~~~~~de 247 (447)
T KOG2751|consen 195 LLQQLEELEKEEAELDHQLKEL---------------------------EFKAERLNEEEDQYWREYNNFQRQLIEHQDE 247 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---------------------------HHHHHHHHHHHHHHHHHHHHHHHhhhcccch
Confidence 5555555555544444333211 1112333334444444443 567899
Q ss_pred eeeeccccCCCCCCCCCChhHHHHHHHHHHHHHHHHHhhcCCCCCCceeEEecCCcceeec
Q 013864 317 FGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMCQYFRPKFPYRIKIIPMGSYPRIMD 377 (435)
Q Consensus 317 fGTINGlRLGrlp~~~V~W~EINAAwGQ~~LLL~tla~kl~~kF~~~YkLvPmGS~SkI~~ 377 (435)
..+|++.|.++++...+-|.+++++||-.+.+.-.++...||... +|..+|.|+.+-+..
T Consensus 248 l~Sle~q~~~s~~qldkL~ktNv~n~~F~I~~~G~fgtIN~FRLG-~lp~~pVew~EINAA 307 (447)
T KOG2751|consen 248 LDSLEAQIEYSQAQLDKLRKTNVFNATFHIWHDGEFGTINNFRLG-RLPSVPVEWDEINAA 307 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhheeeEeecccccccccceec-cccCCCcCHHHHHHH
Confidence 999999999999999999999999999999999999999988777 999999998886653
No 5
>KOG2896 consensus UV radiation resistance associated protein [General function prediction only]
Probab=98.77 E-value=1.3e-06 Score=89.43 Aligned_cols=123 Identities=24% Similarity=0.311 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCC---CceeeeecC-Ce---------
Q 013864 251 ELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLN---DAFPIWHDG-EF--------- 317 (435)
Q Consensus 251 e~e~~~L~~eE~~~w~e~n~~q~qL~~~~ee~~sl~~q~~~~~~qLdkLrktNV~N---d~F~I~hdG-~f--------- 317 (435)
+.-...|+....++-...-+++.++.++.+.+. .|...++++..- ++|.|..+| +.
T Consensus 137 ~k~~~kL~~kr~q~~~~q~~l~k~~k~l~e~~~-----------~l~a~re~fL~~~~~~~~~irq~~~~~s~i~~l~~~ 205 (377)
T KOG2896|consen 137 EKTKQKLEDKRQQFNASQVKLQKQLKSLIELRN-----------ELVAKRELFLEQRIQDTFKIRQDGSPLSKILPLQFS 205 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-----------HHHHHHHhhHhHHHhhhhhhhccCcchheeecCCcc
Confidence 333334444555555555555555444444443 344445554443 678888876 22
Q ss_pred -----eeeccccCCCCCCCCC-ChhHHHHHHHHHHHHHHHHHhhcCCCCCCceeEEecCCcceeeccCCc------eeec
Q 013864 318 -----GTINNFRLGRLPKIPV-EWDEINAAWGQACLLLHTMCQYFRPKFPYRIKIIPMGSYPRIMDSNNN------TYEL 385 (435)
Q Consensus 318 -----GTINGlRLGrlp~~~V-~W~EINAAwGQ~~LLL~tla~kl~~kF~~~YkLvPmGS~SkI~~~~~~------~~eL 385 (435)
-||-|++|--.+...- +=.|+-||+|.++.|+++||+.|. +-+||.|++-||.|+|.|.-+. .++|
T Consensus 206 ~~~~v~tIrGl~lp~~~d~~~~s~~~~aaALGylaHLv~~Is~~L~--~pLRYPIl~~~Sks~I~D~i~~~~~ttr~fpl 283 (377)
T KOG2896|consen 206 YCHLVFTIRGLKLPFIEDKQNKSEQETAAALGYLAHLVSMISKYLE--VPLRYPILLAGSKSYIRDYIPDIETTTREFPL 283 (377)
T ss_pred cchhhhhhhcccCCchhhhhccchHHHHHHHHHHHHHHHHHHHHhc--cccccccccccccceecccCCccccccccccC
Confidence 2566777665544222 356899999999999999999994 4568999999999999975321 2677
Q ss_pred c
Q 013864 386 F 386 (435)
Q Consensus 386 y 386 (435)
|
T Consensus 284 y 284 (377)
T KOG2896|consen 284 Y 284 (377)
T ss_pred c
Confidence 7
No 6
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=97.66 E-value=0.013 Score=59.81 Aligned_cols=214 Identities=21% Similarity=0.267 Sum_probs=122.9
Q ss_pred HHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 189 TRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEF 268 (435)
Q Consensus 189 ~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~~eE~~~w~e~ 268 (435)
..+.+.+..-++.++.+ ++.+.+++.+|+.|..++.++|.+++.+.++++++......+...++.+-.++-.+.
T Consensus 42 ~~~~~~~~~el~~le~E------e~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~ 115 (314)
T PF04111_consen 42 EEDIEELEEELEKLEQE------EEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEER 115 (314)
T ss_dssp HH--HHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566666666543 356778888899999999999999999888888777777666666655555555566
Q ss_pred hHHHHHHHHHHHHHHHHH-----------------------------------HHHHHHHHH----HHHH-hhcccCCCc
Q 013864 269 NNFQFQLIAHQEERDAIS-----------------------------------SKIEVSQAH----LELL-KRTNVLNDA 308 (435)
Q Consensus 269 n~~q~qL~~~~ee~~sl~-----------------------------------~q~~~~~~q----LdkL-rktNV~Nd~ 308 (435)
..++.+.....++++.|. +.+..|--| |..| ++.|+=-..
T Consensus 116 ~sl~~q~~~~~~~L~~L~ktNv~n~~F~I~hdG~fGTINGlRLGrl~~~~V~W~EINAA~Gq~~LLL~~la~~l~~~f~~ 195 (314)
T PF04111_consen 116 DSLKNQYEYASNQLDRLRKTNVYNDTFHIWHDGPFGTINGLRLGRLPNVPVEWNEINAAWGQTALLLQTLAKKLNFKFQR 195 (314)
T ss_dssp HHHHHHHHHHHHHHHCHHT--TTTTT--EEEETTEEEETTEEE--BTTB---HHHHHHHHHHHHHHHHHHHHHCT---SS
T ss_pred HHHHHHHHHHHHHHHHHHhcCchhceeeEeecCCeeeECCeeeccCCCCCCChHHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence 666666555555555443 222233323 2222 344543355
Q ss_pred eeeeecCCeeeeccccCCC-------CCC------CCCChhHHHHHHHHHHHHHHHHHhhcC---C-CCCCceeEEecCC
Q 013864 309 FPIWHDGEFGTINNFRLGR-------LPK------IPVEWDEINAAWGQACLLLHTMCQYFR---P-KFPYRIKIIPMGS 371 (435)
Q Consensus 309 F~I~hdG~fGTINGlRLGr-------lp~------~~V~W~EINAAwGQ~~LLL~tla~kl~---~-kF~~~YkLvPmGS 371 (435)
|.|---|.|.+|=-+.-+. ..+ ....+..+|.|+--.+-+|.-++..+. . .|.+-|+|.
T Consensus 196 y~l~P~Gs~S~I~~~~~~~~~~~~~ly~~~~~~~~~~f~~~~Fd~am~~~L~~~~q~~~~~~~~~~~~~~lPy~i~---- 271 (314)
T PF04111_consen 196 YRLVPMGSFSKIEKLEGDKDKTTYPLYSSGSFSLGRLFSSRKFDKAMVAFLDCLQQLAEFVEKRDPQSFELPYKID---- 271 (314)
T ss_dssp EEEE--GGG-EEEECS---TCEEEESS--SS----GGG--SHHHHHHHHHHHHHHHHHHHHHHHHH-----SS-EC----
T ss_pred ceeEecCCCCEEEEeccCCCCeEEecccCCCchhhhhhhhcchHHHHHHHHHHHHHHHHHHHhcCCcccccceecc----
Confidence 7777777777765554111 001 124688999999888888888877653 1 344345442
Q ss_pred cceeeccCCceeecccCCCCcccccchHHHHHHHHHHHHHHHHHhhcC
Q 013864 372 YPRIMDSNNNTYELFGPVNLFWSTRYDKAMTLFLSCLKDFAEFANSKD 419 (435)
Q Consensus 372 ~SkI~~~~~~~~eLyg~~~lf~~~kFD~AMvaFLdCL~Q~~e~v~~~d 419 (435)
.-+|-+ .++-+. +-....+-+||..+|.+|+-+..++.++.
T Consensus 272 ~~~I~~---~si~~~----~~~~~~WT~AlK~lLtnlKw~l~~~s~~~ 312 (314)
T PF04111_consen 272 KDKIGG---VSIKLQ----FNSEEEWTKALKYLLTNLKWLLAWVSSQL 312 (314)
T ss_dssp TTEECT---CES-ST----TS-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccCC---eeeeec----CCChhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 223322 111111 01245889999999999999999987653
No 7
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=96.96 E-value=0.038 Score=54.60 Aligned_cols=29 Identities=28% Similarity=0.367 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 013864 177 LSDKLDKEVDDVTRDIEAYEACLQRLEGE 205 (435)
Q Consensus 177 Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~ 205 (435)
.++.+|.+++.+...++.|..+|++++.+
T Consensus 11 ~iq~lD~e~~rl~~~~~~~~~~l~k~~~e 39 (239)
T COG1579 11 AIQKLDLEKDRLEPRIKEIRKALKKAKAE 39 (239)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 46678888888888888888888777643
No 8
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=96.88 E-value=0.059 Score=62.38 Aligned_cols=86 Identities=20% Similarity=0.216 Sum_probs=61.4
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 218 EKLKIEEEE-RKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHL 296 (435)
Q Consensus 218 e~~~Le~EE-~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~~eE~~~w~e~n~~q~qL~~~~ee~~sl~~q~~~~~~qL 296 (435)
.+..++++. ..+..++.+.+.+.+.|..|.++++.....|.++++.+-.++..-+-++...+.+...+..++++.+.+|
T Consensus 380 ~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l 459 (1074)
T KOG0250|consen 380 QIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEEL 459 (1074)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444 5555666667777777777777777777777777777777777777777777777778888999999999
Q ss_pred HHHhhcc
Q 013864 297 ELLKRTN 303 (435)
Q Consensus 297 dkLrktN 303 (435)
..|++++
T Consensus 460 ~~lk~~k 466 (1074)
T KOG0250|consen 460 KDLKKTK 466 (1074)
T ss_pred HHHHhcc
Confidence 9999764
No 9
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=96.61 E-value=0.12 Score=59.28 Aligned_cols=68 Identities=18% Similarity=0.229 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 232 AIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELL 299 (435)
Q Consensus 232 eL~~lE~e~~~l~~el~~le~e~~~L~~eE~~~w~e~n~~q~qL~~~~ee~~sl~~q~~~~~~qLdkL 299 (435)
++.+++.+...+..++..++.+...+...-..++...+.++.++..+.+++..+..++.......+.+
T Consensus 435 ~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~~l~~l~~~~~~l~~~~~~~ 502 (1164)
T TIGR02169 435 KINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARAS 502 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333444444444444444444444445555555555555555555555555554444443333
No 10
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=96.11 E-value=0.37 Score=47.83 Aligned_cols=101 Identities=17% Similarity=0.196 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 215 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQA 294 (435)
Q Consensus 215 l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~~eE~~~w~e~n~~q~qL~~~~ee~~sl~~q~~~~~~ 294 (435)
|..|+..++.....|..+|.++..+.+.+..++..+..+ +..+|..+-.....+...+....++..++..+......
T Consensus 94 L~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~---~~~~e~~~~e~~~~~e~e~~~i~e~~~~~~~~~~~L~~ 170 (239)
T COG1579 94 LNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKER---LERLEKNLAEAEARLEEEVAEIREEGQELSSKREELKE 170 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555556666666666666666666666665555543 33444445555555555555555555555444444433
Q ss_pred --------HHHHHhhcccCCCceeeeecCCeeeeccccCCC
Q 013864 295 --------HLELLKRTNVLNDAFPIWHDGEFGTINNFRLGR 327 (435)
Q Consensus 295 --------qLdkLrktNV~Nd~F~I~hdG~fGTINGlRLGr 327 (435)
.-+++++.+ -+-..+.|+|=+=|.
T Consensus 171 ~l~~ell~~yeri~~~~---------kg~gvvpl~g~~C~G 202 (239)
T COG1579 171 KLDPELLSEYERIRKNK---------KGVGVVPLEGRVCGG 202 (239)
T ss_pred hcCHHHHHHHHHHHhcC---------CCceEEeecCCcccC
Confidence 345555532 022456666655553
No 11
>PRK03918 chromosome segregation protein; Provisional
Probab=96.08 E-value=0.31 Score=54.98 Aligned_cols=24 Identities=25% Similarity=0.407 Sum_probs=12.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHH
Q 013864 263 RYWQEFNNFQFQLIAHQEERDAIS 286 (435)
Q Consensus 263 ~~w~e~n~~q~qL~~~~ee~~sl~ 286 (435)
.|+..++.++.++..++.+...+.
T Consensus 304 ~l~~~~~~l~~~~~~l~~~~~~l~ 327 (880)
T PRK03918 304 EYLDELREIEKRLSRLEEEINGIE 327 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555544444433
No 12
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=95.97 E-value=0.49 Score=48.46 Aligned_cols=158 Identities=12% Similarity=0.172 Sum_probs=81.6
Q ss_pred ccchHHHHHHHHHhhcCCcccCCcchHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCC
Q 013864 145 FHSTITVLKRAFEIATSQTQVEQPLCLEC--------------MRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVL 210 (435)
Q Consensus 145 ls~~i~~l~~lFdILSs~s~IDhPLC~eC--------------~d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~ 210 (435)
|.|-+..-..+.-|.|+..+ +.--+..| ...-++.|++++..++.|......-..+|..++...-
T Consensus 116 LrHeL~~kdeLL~~ys~~~e-e~~~~~~~~~~~~~~~~~~~~~~~~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~E 194 (306)
T PF04849_consen 116 LRHELSMKDELLQIYSNDDE-ESEPESSESTPLRRNESSLSSQKCIQLEALQEKLKSLEEENEQLRSEASQLKTETDTYE 194 (306)
T ss_pred HHHHHHHHHHHHHhcCcHhh-hcccccCCCccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcc
Confidence 45555566667777764332 11112222 2345788999999999998888877777764432110
Q ss_pred C-H----HHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhHH
Q 013864 211 S-E----ADFLKE-------KLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK-------ELEERYWQEFNNF 271 (435)
Q Consensus 211 ~-e----e~l~~e-------~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~-------~eE~~~w~e~n~~ 271 (435)
. + .++.++ +..|.+|..+...+...-..|...+-+++-+++.+.+.+- ..-...-..-+.+
T Consensus 195 ekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L 274 (306)
T PF04849_consen 195 EKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQL 274 (306)
T ss_pred HHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 0 0 011111 1222333333333333333333333344444433333332 1111122233445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 013864 272 QFQLIAHQEERDAISSKIEVSQAHLELLKRTN 303 (435)
Q Consensus 272 q~qL~~~~ee~~sl~~q~~~~~~qLdkLrktN 303 (435)
+.++.++++...-..+.+.-++.+|..||+.|
T Consensus 275 ~aEL~elqdkY~E~~~mL~EaQEElk~lR~~~ 306 (306)
T PF04849_consen 275 QAELQELQDKYAECMAMLHEAQEELKTLRKRT 306 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 55666666666666677777999999999876
No 13
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=95.95 E-value=0.39 Score=55.16 Aligned_cols=21 Identities=19% Similarity=0.340 Sum_probs=10.9
Q ss_pred cCCCCCCCCCCh-hHHHHHHHH
Q 013864 324 RLGRLPKIPVEW-DEINAAWGQ 344 (435)
Q Consensus 324 RLGrlp~~~V~W-~EINAAwGQ 344 (435)
++|.+=.++-.| .=|-+|+|.
T Consensus 526 ~l~dli~v~~~y~~Aie~~lg~ 547 (1164)
T TIGR02169 526 TVAQLGSVGERYATAIEVAAGN 547 (1164)
T ss_pred cHHHhcCcCHHHHHHHHHHhhh
Confidence 455554555444 335566664
No 14
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=95.90 E-value=0.55 Score=43.67 Aligned_cols=96 Identities=20% Similarity=0.320 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 177 LSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKR 256 (435)
Q Consensus 177 Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~ 256 (435)
.+..+.+++++.++........+..++... ....+.++..+++...+....+.+.++..++.+++.+.+.+...
T Consensus 89 ~l~~l~~el~~l~~~~~~~~~~l~~~~~~~------~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~ 162 (191)
T PF04156_consen 89 QLQQLQEELDQLQERIQELESELEKLKEDL------QELRELLKSVEERLDSLDESIKELEKEIRELQKELQDSREEVQE 162 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444443221 11122333344444555555555555555555455555555555
Q ss_pred HHHHHHHHHHHHhHHHHHHHHH
Q 013864 257 FKELEERYWQEFNNFQFQLIAH 278 (435)
Q Consensus 257 L~~eE~~~w~e~n~~q~qL~~~ 278 (435)
+...-++.+..++.++..+.+.
T Consensus 163 ~~~~~~~~~~~~~~l~~~~~~~ 184 (191)
T PF04156_consen 163 LRSQLERLQENLQQLEEKIQEL 184 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5554445555555555444333
No 15
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.89 E-value=0.47 Score=54.93 Aligned_cols=111 Identities=14% Similarity=0.178 Sum_probs=51.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----cccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 170 CLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGE-----ARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVN 244 (435)
Q Consensus 170 C~eC~d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~-----~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~ 244 (435)
|..|+..| ..|+.+.+...++...|..+...+..- ...-+.-.+...+...+.+.-.++.++++.++++...++
T Consensus 197 ~~~~~~~l-~~L~~~~~~l~kdVE~~rer~~~~~~Ie~l~~k~~~v~y~~~~~ey~~~k~~~~r~k~~~r~l~k~~~pi~ 275 (1072)
T KOG0979|consen 197 LTTKTEKL-NRLEDEIDKLEKDVERVRERERKKSKIELLEKKKKWVEYKKHDREYNAYKQAKDRAKKELRKLEKEIKPIE 275 (1072)
T ss_pred HHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 55666554 347777777777777766654433210 001111222223333344444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 013864 245 AELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEE 281 (435)
Q Consensus 245 ~el~~le~e~~~L~~eE~~~w~e~n~~q~qL~~~~ee 281 (435)
.-++.|+.+..++...=.+-|.++|.......+..++
T Consensus 276 ~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek 312 (1072)
T KOG0979|consen 276 DKKEELESEKKETRSKISQKQRELNEALAKVQEKFEK 312 (1072)
T ss_pred hhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444443344455555444443333333
No 16
>PRK11637 AmiB activator; Provisional
Probab=95.78 E-value=0.21 Score=52.48 Aligned_cols=75 Identities=19% Similarity=0.308 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 179 DKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (435)
Q Consensus 179 e~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~ 258 (435)
+.+++++++++++++....-++.++.+. .++..++..++.+...+..+|.+++++...++++|..++.++..++
T Consensus 43 ~~~~~~l~~l~~qi~~~~~~i~~~~~~~------~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q 116 (428)
T PRK11637 43 SDNRDQLKSIQQDIAAKEKSVRQQQQQR------ASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLE 116 (428)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677788888877777777666555332 2233444445555555555555555555555555555555444444
Q ss_pred H
Q 013864 259 E 259 (435)
Q Consensus 259 ~ 259 (435)
.
T Consensus 117 ~ 117 (428)
T PRK11637 117 Q 117 (428)
T ss_pred H
Confidence 3
No 17
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=95.77 E-value=0.15 Score=60.09 Aligned_cols=99 Identities=19% Similarity=0.319 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCc---eeeee
Q 013864 237 EKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDA---FPIWH 313 (435)
Q Consensus 237 E~e~~~l~~el~~le~e~~~L~~eE~~~w~e~n~~q~qL~~~~ee~~sl~~q~~~~~~qLdkLrktNV~Nd~---F~I~h 313 (435)
+.+.+++..++..++.....+...-...|+++...+..+..+..+..++..++..+.+.... .+..-.+ .....
T Consensus 438 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~ 514 (1163)
T COG1196 438 QTELEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRA---SQGVRAVLEALESGL 514 (1163)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hhhHHHHHHHHhccC
Confidence 33344444444444444444444455666666666666666666666665555554444333 0100011 11123
Q ss_pred cCCeeeeccccCCCCCCCCCChhH-HHHHHH
Q 013864 314 DGEFGTINNFRLGRLPKIPVEWDE-INAAWG 343 (435)
Q Consensus 314 dG~fGTINGlRLGrlp~~~V~W~E-INAAwG 343 (435)
.|.||+ +|-+-.++..|.- |-+|+|
T Consensus 515 ~Gv~G~-----v~~li~v~~~y~~Aie~alG 540 (1163)
T COG1196 515 PGVYGP-----VAELIKVKEKYETALEAALG 540 (1163)
T ss_pred CCccch-----HHHhcCcChHHHHHHHHHcc
Confidence 455654 4444455667776 777777
No 18
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=95.67 E-value=1.9 Score=42.32 Aligned_cols=54 Identities=17% Similarity=0.340 Sum_probs=38.1
Q ss_pred hhcccCCCceeeeecCCeeeeccccCCCCCC---------------CCCChhHHHHHHHHHHHHHHHHHhh
Q 013864 300 KRTNVLNDAFPIWHDGEFGTINNFRLGRLPK---------------IPVEWDEINAAWGQACLLLHTMCQY 355 (435)
Q Consensus 300 rktNV~Nd~F~I~hdG~fGTINGlRLGrlp~---------------~~V~W~EINAAwGQ~~LLL~tla~k 355 (435)
+...+|..+..| ||.=-+.+=|||||+.- ..=.|..+...+...+--..-||++
T Consensus 166 ~~i~~~~~~i~~--dG~~~~V~~LrlGr~~l~~~t~Dg~~~g~~~~~~~~W~~l~~~~~~~i~~ai~ia~k 234 (251)
T PF11932_consen 166 RTIEVYQGTITL--DGEERQVDFLRLGRVALYYQTLDGSQAGVWDPATGQWQWLPDSYRREIRKAIRIARK 234 (251)
T ss_pred CceeEEEEEEeE--CCeEEEEEEEeecchhheeECCCccceeeecCCCCCCeECCHHHHHHHHHHHHHHhC
Confidence 444555555555 88888899999998731 2236888877888777777777775
No 19
>PHA02562 46 endonuclease subunit; Provisional
Probab=95.57 E-value=0.31 Score=52.05 Aligned_cols=13 Identities=23% Similarity=0.652 Sum_probs=8.0
Q ss_pred CCcchHHHHHHHH
Q 013864 166 EQPLCLECMRVLS 178 (435)
Q Consensus 166 DhPLC~eC~d~Ll 178 (435)
.+..|.-|...+-
T Consensus 283 ~~~~Cp~C~~~~~ 295 (562)
T PHA02562 283 KGGVCPTCTQQIS 295 (562)
T ss_pred CCCCCCCCCCcCC
Confidence 3567777765553
No 20
>PRK11637 AmiB activator; Provisional
Probab=95.33 E-value=1.2 Score=46.73 Aligned_cols=65 Identities=12% Similarity=0.237 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 013864 222 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAIS 286 (435)
Q Consensus 222 Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~~eE~~~w~e~n~~q~qL~~~~ee~~sl~ 286 (435)
+....++|.....+++.+.++++..+.+++.+..+|+.+..+.-.....++.++...+.++..+.
T Consensus 175 l~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~ 239 (428)
T PRK11637 175 LKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELR 239 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444455555555555555555555445544444433334444433333333333333
No 21
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.32 E-value=0.55 Score=55.16 Aligned_cols=56 Identities=14% Similarity=0.270 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 013864 224 EEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQ 279 (435)
Q Consensus 224 ~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~~eE~~~w~e~n~~q~qL~~~~ 279 (435)
+...+...+|..++.+...+..++.+.++++..+..++.++-...+.+...+.+..
T Consensus 535 ~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~k 590 (1293)
T KOG0996|consen 535 ESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAK 590 (1293)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445566666666667777777777777777777766666666655544443
No 22
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=95.29 E-value=1.2 Score=50.92 Aligned_cols=21 Identities=14% Similarity=0.007 Sum_probs=12.3
Q ss_pred ccchHHHHHHHHHHHHHHHHH
Q 013864 395 TRYDKAMTLFLSCLKDFAEFA 415 (435)
Q Consensus 395 ~kFD~AMvaFLdCL~Q~~e~v 415 (435)
+.|+..+.+|..+...|.+..
T Consensus 1025 ~~f~~~~~~F~~v~~~f~~~F 1045 (1179)
T TIGR02168 1025 EIDREARERFKDTFDQVNENF 1045 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666555544
No 23
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=95.22 E-value=1.2 Score=45.41 Aligned_cols=46 Identities=17% Similarity=0.148 Sum_probs=28.7
Q ss_pred CcccchHHHHHHHHHhhcCCcccCCcchH-HH---HHHHHHHHHHHHHHH
Q 013864 143 SGFHSTITVLKRAFEIATSQTQVEQPLCL-EC---MRVLSDKLDKEVDDV 188 (435)
Q Consensus 143 ~~ls~~i~~l~~lFdILSs~s~IDhPLC~-eC---~d~Lle~Ld~qle~~ 188 (435)
..|...|....++|.=+...+..+.|-.. |= ..-....|+.|+..+
T Consensus 78 ~EL~~~I~egr~~~~~~E~~~~~~nPpLf~EY~~a~~d~r~~m~~q~~~v 127 (325)
T PF08317_consen 78 RELKKYISEGRQIFEEIEEETYESNPPLFREYYTADPDMRLLMDNQFQLV 127 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44777788888888777777777777765 21 122334455555553
No 24
>PRK09039 hypothetical protein; Validated
Probab=94.93 E-value=1.4 Score=45.61 Aligned_cols=17 Identities=18% Similarity=0.266 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 013864 178 SDKLDKEVDDVTRDIEA 194 (435)
Q Consensus 178 le~Ld~qle~~~~E~d~ 194 (435)
+..++++++.++.++..
T Consensus 48 i~~~~~eL~~L~~qIa~ 64 (343)
T PRK09039 48 ISGKDSALDRLNSQIAE 64 (343)
T ss_pred HhhHHHHHHHHHHHHHH
Confidence 34444444444444443
No 25
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=94.84 E-value=1.4 Score=48.40 Aligned_cols=33 Identities=27% Similarity=0.341 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 225 EERKLEAAIEETEKQNAEVNAELKELELKSKRF 257 (435)
Q Consensus 225 EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L 257 (435)
....+..+.+.|..+.++..+.|.+|+.++..+
T Consensus 200 ~~e~l~~E~~~L~~q~~e~~~ri~~LEedi~~l 232 (546)
T PF07888_consen 200 SSEELKEERESLKEQLAEARQRIRELEEDIKTL 232 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444
No 26
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=94.82 E-value=1 Score=53.02 Aligned_cols=80 Identities=16% Similarity=0.149 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCC
Q 013864 231 AAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEF---NNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLND 307 (435)
Q Consensus 231 ~eL~~lE~e~~~l~~el~~le~e~~~L~~eE~~~w~e~---n~~q~qL~~~~ee~~sl~~q~~~~~~qLdkLrktNV~Nd 307 (435)
+.|++|-...++++.+|.++.+. |-++|...=..+ +.-..+|..+|.+...|...+.....|+++|+..||+.+
T Consensus 1225 ~~i~~l~~~~~~lr~~l~~~~e~---L~~~E~~Lsdi~~~~~~a~~~LesLq~~~~~l~~~~keL~e~~~~ik~sdi~GA 1301 (1758)
T KOG0994|consen 1225 EDIAQLASATESLRRQLQALTED---LPQEEETLSDITNSLPLAGKDLESLQREFNGLLTTYKELREQLEKIKESDILGA 1301 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh---hhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchhH
Confidence 34445555555555555544432 333443333333 334488899999999999999999999999999999865
Q ss_pred ceeeee
Q 013864 308 AFPIWH 313 (435)
Q Consensus 308 ~F~I~h 313 (435)
.=-|.|
T Consensus 1302 ~~~~r~ 1307 (1758)
T KOG0994|consen 1302 FNSTRH 1307 (1758)
T ss_pred HHHHHH
Confidence 433444
No 27
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=94.81 E-value=0.8 Score=48.79 Aligned_cols=85 Identities=19% Similarity=0.249 Sum_probs=58.8
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 167 QPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAE 246 (435)
Q Consensus 167 hPLC~eC~d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~e 246 (435)
+|.|..| ....+++++++.+|+..-..-+....++ -..|++++..++++...+..+|.+.+.++.++++.
T Consensus 26 ~~~~s~s----~~a~~~~l~q~q~ei~~~~~~i~~~~~~------~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~ 95 (420)
T COG4942 26 VLAAAFS----AAADDKQLKQIQKEIAALEKKIREQQDQ------RAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQ 95 (420)
T ss_pred ccccchh----HHhHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhh
Confidence 5667777 4445577788777776666555543322 23466777778888888888888888888888888
Q ss_pred HHHHHHHHHHHHHHH
Q 013864 247 LKELELKSKRFKELE 261 (435)
Q Consensus 247 l~~le~e~~~L~~eE 261 (435)
|.+++..+..|+.++
T Consensus 96 I~~~~~~l~~l~~q~ 110 (420)
T COG4942 96 IADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888777777666554
No 28
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=94.70 E-value=2.6 Score=43.53 Aligned_cols=129 Identities=19% Similarity=0.251 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-----cCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 174 MRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEAR-----DVLS-EADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAEL 247 (435)
Q Consensus 174 ~d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~-----~~~~-ee~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el 247 (435)
...-++.|.+++.+++.|++.+..-+.+.+.... ..++ .+++..+++++...-..|+.++..+-.|.+++..|.
T Consensus 84 L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ER 163 (319)
T PF09789_consen 84 LKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQSLLDEKEELVTER 163 (319)
T ss_pred HHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445678999999999999999988877653221 1122 356777888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHHH--------------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 013864 248 KELELKSKRFKELEE--------------RYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTN 303 (435)
Q Consensus 248 ~~le~e~~~L~~eE~--------------~~w~e~n~~q~qL~~~~ee~~sl~~q~~~~~~qLdkLrktN 303 (435)
...+.+..+|+.+-. ...-+-.-++-++...++|...+...+.--..-|++ ++.|
T Consensus 164 D~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~qeE~~l~k~~i~KYK~~le~-k~~~ 232 (319)
T PF09789_consen 164 DAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKERLKQLQEEKELLKQTINKYKSALER-KRKK 232 (319)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hccc
Confidence 888888888754321 112222334456888899999888888777888885 4443
No 29
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=94.64 E-value=3.4 Score=42.47 Aligned_cols=159 Identities=15% Similarity=0.184 Sum_probs=92.6
Q ss_pred CcccchHHHHHHHHHhhcCCcccCCcc-hHHHH---HHHHHHHHHHHHH------HHHHHHHHHHHHHHHhcccc---cC
Q 013864 143 SGFHSTITVLKRAFEIATSQTQVEQPL-CLECM---RVLSDKLDKEVDD------VTRDIEAYEACLQRLEGEAR---DV 209 (435)
Q Consensus 143 ~~ls~~i~~l~~lFdILSs~s~IDhPL-C~eC~---d~Lle~Ld~qle~------~~~E~d~Y~~fL~~L~~~~~---~~ 209 (435)
.-|..+|..-.++|.=+...+.++.|. =.|=+ .-.-..|+.|+.- ++....=|..=.+-+++-.. ..
T Consensus 73 ~EL~~~I~egr~~~~~~E~et~~~nPpLF~EY~~a~~d~r~lm~~Qf~lvK~~aRl~ak~~WYeWR~kllegLk~~L~~~ 152 (312)
T smart00787 73 KELKKYISEGRDLFKEIEEETLINNPPLFKEYFSASPDVKLLMDKQFQLVKTFARLEAKKMWYEWRMKLLEGLKEGLDEN 152 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 336777777888888888888877764 22222 1223334444443 34445556554443332110 00
Q ss_pred ---C-CH-HHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 013864 210 ---L-SE-ADFL-------KEKLKIEEEERKLEAAIEETEKQNAEVNA----ELKELELKSKRFKELEERYWQEFNNFQF 273 (435)
Q Consensus 210 ---~-~e-e~l~-------~e~~~Le~EE~~L~~eL~~lE~e~~~l~~----el~~le~e~~~L~~eE~~~w~e~n~~q~ 273 (435)
+ .+ +-|. .-+-.+.+....|..++..|.+-..+++. ++..++.++..++.+-...-+....++.
T Consensus 153 ~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~ 232 (312)
T smart00787 153 LEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEE 232 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00 1111 11223455555666666666665555543 6677777777776666667777777888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013864 274 QLIAHQEERDAISSKIEVSQAHLELLKR 301 (435)
Q Consensus 274 qL~~~~ee~~sl~~q~~~~~~qLdkLrk 301 (435)
++.+.........++..-.+.++..+++
T Consensus 233 ~l~~l~~~I~~~~~~k~e~~~~I~~ae~ 260 (312)
T smart00787 233 ELQELESKIEDLTNKKSELNTEIAEAEK 260 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8887777777777777777777777776
No 30
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=94.58 E-value=3.6 Score=38.23 Aligned_cols=66 Identities=17% Similarity=0.401 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 180 KLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELE 251 (435)
Q Consensus 180 ~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le 251 (435)
..++++..+.+|.+.....+..+..+- .++......+.++.+...+++..++...+.+.+++.++.
T Consensus 85 ~~~~~l~~l~~el~~l~~~~~~~~~~l------~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 85 ELQQQLQQLQEELDQLQERIQELESEL------EKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555544433211 112222223334444445555555555555555555554
No 31
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.45 E-value=1.5 Score=49.81 Aligned_cols=169 Identities=15% Similarity=0.209 Sum_probs=97.2
Q ss_pred cCCcchHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 165 VEQPLCLECMRVLSDKLDKEV-------DDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETE 237 (435)
Q Consensus 165 IDhPLC~eC~d~Lle~Ld~ql-------e~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~lE 237 (435)
-..|.=.||...|.+..+.=- +.+..|.+.....|+....+... .-.++.++++.|.+.-++|.+.++++.
T Consensus 529 ~~~p~~~E~l~lL~~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~--~L~~l~e~~~~l~~~ae~LaeR~e~a~ 606 (717)
T PF10168_consen 529 SSSPSPQECLELLSQATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLK--ELQELQEERKSLRESAEKLAERYEEAK 606 (717)
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677899988876533222 22233333333333332221110 113344555556666666677777777
Q ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCceeeee
Q 013864 238 KQNAEVNAELKELELKSKR----FKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWH 313 (435)
Q Consensus 238 ~e~~~l~~el~~le~e~~~----L~~eE~~~w~e~n~~q~qL~~~~ee~~sl~~q~~~~~~qLdkLrktNV~Nd~F~I~h 313 (435)
...+.+.+.++.+-..... +-.-|++|-++...++.++..++...+.+++++++.+.|++ ++.+.-.
T Consensus 607 d~Qe~L~~R~~~vl~~l~~~~P~LS~AEr~~~~EL~~~~~~l~~l~~si~~lk~k~~~Q~~~i~--~~~~~~~------- 677 (717)
T PF10168_consen 607 DKQEKLMKRVDRVLQLLNSQLPVLSEAEREFKKELERMKDQLQDLKASIEQLKKKLDYQQRQIE--SQKSPKK------- 677 (717)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccccccC-------
Confidence 6666666655554332222 45667778787777777777777777777777777666665 2222211
Q ss_pred cCCeeeeccccCCCCCCCCCChhHHHHHHHHHHHHHHHHHhhc
Q 013864 314 DGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMCQYF 356 (435)
Q Consensus 314 dG~fGTINGlRLGrlp~~~V~W~EINAAwGQ~~LLL~tla~kl 356 (435)
.+|+ +| .--+..|-.++.|-.--+..+.+++
T Consensus 678 ----~s~~------L~--~~Q~~~I~~iL~~~~~~I~~~v~~i 708 (717)
T PF10168_consen 678 ----KSIV------LS--ESQKRTIKEILKQQGEEIDELVKQI 708 (717)
T ss_pred ----CCcc------CC--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 22 3578899999999888888777655
No 32
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=94.41 E-value=1.5 Score=51.26 Aligned_cols=76 Identities=20% Similarity=0.293 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 222 IEEEERKLEAAI-EETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLE 297 (435)
Q Consensus 222 Le~EE~~L~~eL-~~lE~e~~~l~~el~~le~e~~~L~~eE~~~w~e~n~~q~qL~~~~ee~~sl~~q~~~~~~qLd 297 (435)
+++....+.++. ..+..++.+.+.+++.|+.+.+.++.+..+.=.++|.++..+..-++++..++..+......++
T Consensus 377 l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~ 453 (1074)
T KOG0250|consen 377 LEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIE 453 (1074)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 333444444444 4555556666666777777777777777777777777777777777777777666665555443
No 33
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=94.40 E-value=1.9 Score=47.49 Aligned_cols=31 Identities=16% Similarity=0.223 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 216 LKEKLKIEEEERKLEAAIEETEKQNAEVNAE 246 (435)
Q Consensus 216 ~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~e 246 (435)
.+|...|..+..++.+.|.+||.+...+.+.
T Consensus 205 ~~E~~~L~~q~~e~~~ri~~LEedi~~l~qk 235 (546)
T PF07888_consen 205 KEERESLKEQLAEARQRIRELEEDIKTLTQK 235 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444455555555444444333
No 34
>PRK03918 chromosome segregation protein; Provisional
Probab=94.38 E-value=1.7 Score=49.17 Aligned_cols=8 Identities=13% Similarity=0.256 Sum_probs=3.6
Q ss_pred CCcccCCc
Q 013864 161 SQTQVEQP 168 (435)
Q Consensus 161 s~s~IDhP 168 (435)
.|..++.+
T Consensus 133 ~Qg~~~~~ 140 (880)
T PRK03918 133 RQGEIDAI 140 (880)
T ss_pred eccchHHH
Confidence 34444444
No 35
>PHA02562 46 endonuclease subunit; Provisional
Probab=94.37 E-value=1.4 Score=47.14 Aligned_cols=13 Identities=23% Similarity=0.164 Sum_probs=6.9
Q ss_pred CCChhHHHHHHHH
Q 013864 332 PVEWDEINAAWGQ 344 (435)
Q Consensus 332 ~V~W~EINAAwGQ 344 (435)
...|.++++...+
T Consensus 385 ~~~l~~~~~~~~~ 397 (562)
T PHA02562 385 QDELDKIVKTKSE 397 (562)
T ss_pred HHHHHHHHHHHHH
Confidence 3466666655443
No 36
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=94.33 E-value=2.1 Score=41.78 Aligned_cols=80 Identities=19% Similarity=0.285 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013864 222 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 301 (435)
Q Consensus 222 Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~~eE~~~w~e~n~~q~qL~~~~ee~~sl~~q~~~~~~qLdkLrk 301 (435)
++.+..+....++.++....+++.+|..+...+..|+..+.++-.-...+..++..+...+..+..+++.+.....+|.+
T Consensus 125 ~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~ 204 (237)
T PF00261_consen 125 LEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEK 204 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555555666666555555555555555555555555555555555555556666665555555544
No 37
>PRK02224 chromosome segregation protein; Provisional
Probab=94.31 E-value=1.7 Score=49.35 Aligned_cols=16 Identities=31% Similarity=0.559 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 013864 279 QEERDAISSKIEVSQA 294 (435)
Q Consensus 279 ~ee~~sl~~q~~~~~~ 294 (435)
..++..+..+|.....
T Consensus 673 ~~~~~~l~~~i~~~~~ 688 (880)
T PRK02224 673 REERDDLQAEIGAVEN 688 (880)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444443333
No 38
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=94.11 E-value=2 Score=43.83 Aligned_cols=21 Identities=14% Similarity=0.215 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 013864 280 EERDAISSKIEVSQAHLELLK 300 (435)
Q Consensus 280 ee~~sl~~q~~~~~~qLdkLr 300 (435)
+++..+..++..++.+++.++
T Consensus 246 ~~l~~~~~~l~~~~~~l~~~~ 266 (423)
T TIGR01843 246 EELTEAQARLAELRERLNKAR 266 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666544
No 39
>PRK02224 chromosome segregation protein; Provisional
Probab=94.08 E-value=1.3 Score=50.20 Aligned_cols=26 Identities=27% Similarity=0.419 Sum_probs=11.1
Q ss_pred chHHHHHHHHHhhcCCcccCCcchHHHH
Q 013864 147 STITVLKRAFEIATSQTQVEQPLCLECM 174 (435)
Q Consensus 147 ~~i~~l~~lFdILSs~s~IDhPLC~eC~ 174 (435)
+.++.+...-+.+.. -+....|.-|-
T Consensus 433 ~~~~~~~~~l~~~~~--~l~~~~Cp~C~ 458 (880)
T PRK02224 433 ATLRTARERVEEAEA--LLEAGKCPECG 458 (880)
T ss_pred HHHHHHHHHHHHHHH--HHhcccCCCCC
Confidence 333444444444431 12344555554
No 40
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=94.00 E-value=2.2 Score=42.05 Aligned_cols=43 Identities=12% Similarity=0.156 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 215 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 257 (435)
Q Consensus 215 l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L 257 (435)
+.+|+..|..|.....++|.++......++..|+.++.+..+.
T Consensus 37 ~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~ 79 (230)
T PF10146_consen 37 YRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKR 79 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555555555555444433
No 41
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=93.92 E-value=2.8 Score=49.71 Aligned_cols=57 Identities=14% Similarity=0.155 Sum_probs=35.9
Q ss_pred CcccchHHHHHHHHHhhcCCcccCC-------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 143 SGFHSTITVLKRAFEIATSQTQVEQ-------------PLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQ 200 (435)
Q Consensus 143 ~~ls~~i~~l~~lFdILSs~s~IDh-------------PLC~eC~d~Lle~Ld~qle~~~~E~d~Y~~fL~ 200 (435)
.-++.+......||+-+++-+..+. --|..| +.++..++.+++.++++.+.-.+|.+
T Consensus 148 ~i~~~kp~err~iiEEaaGv~~y~~r~~ea~~~L~~~~~nl~~~-~~~~~el~~~l~~L~~q~~~a~~y~~ 217 (1163)
T COG1196 148 EIINAKPEERRKLIEEAAGVSKYKERKEEAERKLERTEENLERL-EDLLEELEKQLEKLERQAEKAERYQE 217 (1163)
T ss_pred HHHcCCHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666667777766443321 225554 44566688888888888887766654
No 42
>PRK10884 SH3 domain-containing protein; Provisional
Probab=93.91 E-value=1.6 Score=42.40 Aligned_cols=81 Identities=10% Similarity=0.138 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 176 VLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSK 255 (435)
Q Consensus 176 ~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~ 255 (435)
..+..|++|++.++.+.+.-..-++.. ..++...+...+.+..+|.++.++|.++.+.+.+++..++.+..
T Consensus 93 ~rlp~le~el~~l~~~l~~~~~~~~~~---------~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~ 163 (206)
T PRK10884 93 TRVPDLENQVKTLTDKLNNIDNTWNQR---------TAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLD 163 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567777777765554432221110 12233333444445555556666666666666666666666655
Q ss_pred HHHHHHHHHH
Q 013864 256 RFKELEERYW 265 (435)
Q Consensus 256 ~L~~eE~~~w 265 (435)
+++..+..-|
T Consensus 164 ~~~~~~~~~w 173 (206)
T PRK10884 164 DKQRTIIMQW 173 (206)
T ss_pred HHHHHHHHHH
Confidence 5555554333
No 43
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=93.84 E-value=0.37 Score=47.58 Aligned_cols=74 Identities=19% Similarity=0.275 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 013864 214 DFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISS 287 (435)
Q Consensus 214 ~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~~eE~~~w~e~n~~q~qL~~~~ee~~sl~~ 287 (435)
++...++.+.+|...|..+++++|.+.++++..|+.++.|..+|++.-+..--+|.+++..+.++++.....+.
T Consensus 139 e~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~~El~e~ 212 (290)
T COG4026 139 ELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGVELPEE 212 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcccccchHH
Confidence 34444566777888899999999999999999999999999999888777777888888888777776655543
No 44
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=93.83 E-value=5.3 Score=38.40 Aligned_cols=26 Identities=19% Similarity=0.372 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 177 LSDKLDKEVDDVTRDIEAYEACLQRL 202 (435)
Q Consensus 177 Lle~Ld~qle~~~~E~d~Y~~fL~~L 202 (435)
||..|+.++.+..+.......-+..+
T Consensus 28 lIksLKeei~emkk~e~~~~k~m~ei 53 (201)
T PF13851_consen 28 LIKSLKEEIAEMKKKEERNEKLMAEI 53 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666665555444444444433
No 45
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=93.81 E-value=5.2 Score=36.77 Aligned_cols=82 Identities=17% Similarity=0.268 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 180 KLDKEVDDVTRDIEAYEACLQRLEGEARDVL-SEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (435)
Q Consensus 180 ~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~-~ee~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~ 258 (435)
.|+.++..+++|...-+.-+..+..+..+.- .-+.+..++..+-.+.+.|..+|..+-.++..+.+++...+.++..|+
T Consensus 21 sle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE 100 (140)
T PF10473_consen 21 SLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELE 100 (140)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555554444444432221100 012234445555556666666666666666666666666666555555
Q ss_pred HHH
Q 013864 259 ELE 261 (435)
Q Consensus 259 ~eE 261 (435)
...
T Consensus 101 ~~~ 103 (140)
T PF10473_consen 101 SLN 103 (140)
T ss_pred HHh
Confidence 433
No 46
>PRK04863 mukB cell division protein MukB; Provisional
Probab=93.80 E-value=2.3 Score=51.93 Aligned_cols=13 Identities=38% Similarity=0.506 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHH
Q 013864 338 INAAWGQACLLLH 350 (435)
Q Consensus 338 INAAwGQ~~LLL~ 350 (435)
.++||-.+.-+|.
T Consensus 491 ~~~a~~~~~~~~~ 503 (1486)
T PRK04863 491 RSEAWDVARELLR 503 (1486)
T ss_pred HHHHHHHHHHHHH
Confidence 4555555544443
No 47
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=93.72 E-value=6 Score=40.35 Aligned_cols=22 Identities=14% Similarity=0.219 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 013864 179 DKLDKEVDDVTRDIEAYEACLQ 200 (435)
Q Consensus 179 e~Ld~qle~~~~E~d~Y~~fL~ 200 (435)
..++.++..+..+...+..+++
T Consensus 84 ~~l~~~~~~l~a~~~~l~~~~~ 105 (423)
T TIGR01843 84 AELESQVLRLEAEVARLRAEAD 105 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc
Confidence 3455555555555555555444
No 48
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=93.66 E-value=1.3 Score=41.62 Aligned_cols=17 Identities=0% Similarity=0.235 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 013864 177 LSDKLDKEVDDVTRDIE 193 (435)
Q Consensus 177 Lle~Ld~qle~~~~E~d 193 (435)
+-.+++..++.+.++++
T Consensus 55 VRkqY~~~i~~AKkqRk 71 (161)
T TIGR02894 55 VRKQYEEAIELAKKQRK 71 (161)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 44556666666666554
No 49
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=93.58 E-value=4.6 Score=44.61 Aligned_cols=17 Identities=12% Similarity=0.010 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHhhc
Q 013864 286 SSKIEVSQAHLELLKRT 302 (435)
Q Consensus 286 ~~q~~~~~~qLdkLrkt 302 (435)
+.++......+.+|...
T Consensus 377 e~~~~~~~~l~~~i~l~ 393 (581)
T KOG0995|consen 377 EKKFIDLNSLIRRIKLG 393 (581)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333444445555544
No 50
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=93.50 E-value=4.2 Score=36.77 Aligned_cols=6 Identities=50% Similarity=0.661 Sum_probs=2.8
Q ss_pred HHHHHh
Q 013864 295 HLELLK 300 (435)
Q Consensus 295 qLdkLr 300 (435)
++++|+
T Consensus 141 E~~kLk 146 (151)
T PF11559_consen 141 EIEKLK 146 (151)
T ss_pred HHHHHH
Confidence 444544
No 51
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=93.47 E-value=3.7 Score=43.59 Aligned_cols=29 Identities=17% Similarity=0.374 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 229 LEAAIEETEKQNAEVNAELKELELKSKRF 257 (435)
Q Consensus 229 L~~eL~~lE~e~~~l~~el~~le~e~~~L 257 (435)
|..+|..|-.++.+++++...|..+.+.|
T Consensus 149 lqtrl~~l~~qr~ql~aq~qsl~a~~k~L 177 (499)
T COG4372 149 LQTRLKTLAEQRRQLEAQAQSLQASQKQL 177 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444433333
No 52
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=93.47 E-value=7 Score=38.15 Aligned_cols=84 Identities=20% Similarity=0.317 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 217 KEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHL 296 (435)
Q Consensus 217 ~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~~eE~~~w~e~n~~q~qL~~~~ee~~sl~~q~~~~~~qL 296 (435)
..+...+.--..+...+.+|+.+...+...|+.++.......+.|..|=.....+..++.+.....+.++........++
T Consensus 127 ~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~i 206 (237)
T PF00261_consen 127 QELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEI 206 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666677777777777777777777777766666666666767777777776666666666666655555555
Q ss_pred HHHh
Q 013864 297 ELLK 300 (435)
Q Consensus 297 dkLr 300 (435)
+.|.
T Consensus 207 d~le 210 (237)
T PF00261_consen 207 DRLE 210 (237)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5553
No 53
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=93.37 E-value=6.1 Score=46.24 Aligned_cols=173 Identities=21% Similarity=0.317 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 013864 213 ADFLKEKLKIEEEERKLEAAIEETEKQNA-------EVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAI 285 (435)
Q Consensus 213 e~l~~e~~~Le~EE~~L~~eL~~lE~e~~-------~l~~el~~le~e~~~L~~eE~~~w~e~n~~q~qL~~~~ee~~sl 285 (435)
+.+.+++..++.+..+...++++++.... +..++...+..+..++...-+..|++-+.++..+....++
T Consensus 414 ~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~d---- 489 (1200)
T KOG0964|consen 414 NILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWREEKKLRSLIANLEED---- 489 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 44556666666666666666666655554 4445555555666666666678899988887766555554
Q ss_pred HHHHHHHHHHHHHHhhcccCCCceee-------eecCCeeeecccc-------C------C-CCCCCCCChhHHHHHHHH
Q 013864 286 SSKIEVSQAHLELLKRTNVLNDAFPI-------WHDGEFGTINNFR-------L------G-RLPKIPVEWDEINAAWGQ 344 (435)
Q Consensus 286 ~~q~~~~~~qLdkLrktNV~Nd~F~I-------~hdG~fGTINGlR-------L------G-rlp~~~V~W~EINAAwGQ 344 (435)
+..++.+|...-..+|+|-.=.| ...|.|||.-.|= - | +|=++-|+=+||-
T Consensus 490 ---l~~~~~~L~~~~~r~v~nGi~~v~~I~e~~k~ngv~G~v~eL~~v~~~f~tavEvtaGNsLF~iVVdndevA----- 561 (1200)
T KOG0964|consen 490 ---LSRAEKNLRATMNRSVANGIDSVRKIKEELKPNGVFGTVYELIKVPNKFKTAVEVTAGNSLFNIVVDNDEVA----- 561 (1200)
T ss_pred ---HHHHHHHHHHhccchhhhhhHHHHHHHHHhcccccceehhhhhcCCHHHHhHHhhhcccceEEEEecccHHH-----
Confidence 44455555555555555522111 1467777743221 0 0 2224678888883
Q ss_pred HHHHHHHHHhhcCCCCCCceeEEecC--Ccceeecc-CCceeecccCCCCcccccchHHHHHH
Q 013864 345 ACLLLHTMCQYFRPKFPYRIKIIPMG--SYPRIMDS-NNNTYELFGPVNLFWSTRYDKAMTLF 404 (435)
Q Consensus 345 ~~LLL~tla~kl~~kF~~~YkLvPmG--S~SkI~~~-~~~~~eLyg~~~lf~~~kFD~AMvaF 404 (435)
..+|..+- ++ ++. |..++||- +++.+.-. +.+..||-.- +=.+.+||+|+.+.
T Consensus 562 -TkIl~~~n-~m--~~G-rVTF~PLNrl~~r~v~yp~~sdaiPli~k--l~y~p~fdka~k~V 617 (1200)
T KOG0964|consen 562 -TKILRKLN-KM--KGG-RVTFMPLNRLKARDVEYPKDSDAIPLISK--LRYEPQFDKALKHV 617 (1200)
T ss_pred -HHHHHHHH-hc--cCC-eeEEeecccCchhhccCCCCCCccchHHH--hCcchhhHHHHHHH
Confidence 33444332 34 444 78899997 33322211 2234455221 11356888887764
No 54
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.06 E-value=3.6 Score=45.42 Aligned_cols=32 Identities=19% Similarity=0.223 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 215 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAE 246 (435)
Q Consensus 215 l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~e 246 (435)
+..|++..+..|.+|..+..+||.|.-.+.++
T Consensus 154 lr~elKe~KfRE~RllseYSELEEENIsLQKq 185 (772)
T KOG0999|consen 154 LRDELKEYKFREARLLSEYSELEEENISLQKQ 185 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 45577777888888888888887766554443
No 55
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.03 E-value=3.9 Score=45.23 Aligned_cols=61 Identities=21% Similarity=0.357 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 013864 218 EKLKIEEEERKLEAAIEETEKQNAE--------------VNAELKELELKSKRFKELEERYWQEFNNFQFQLIAH 278 (435)
Q Consensus 218 e~~~Le~EE~~L~~eL~~lE~e~~~--------------l~~el~~le~e~~~L~~eE~~~w~e~n~~q~qL~~~ 278 (435)
.+.+|+.|.+.++++|.....|++. ++.+...|..++++++.-|.+...+|+.+.-+-+.+
T Consensus 108 kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsL 182 (772)
T KOG0999|consen 108 KILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEENISL 182 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH
Confidence 3344566666666665555444443 445556666777777777888888887776443333
No 56
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=93.02 E-value=4.4 Score=41.37 Aligned_cols=29 Identities=17% Similarity=0.366 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013864 175 RVLSDKLDKEVDDVTRDIEAYEACLQRLE 203 (435)
Q Consensus 175 d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~ 203 (435)
+.|.+.|+..++.++.|.......+..+.
T Consensus 148 ~gl~~~L~~~~~~L~~D~~~L~~~~~~l~ 176 (325)
T PF08317_consen 148 EGLKEGLEENLELLQEDYAKLDKQLEQLD 176 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666665554
No 57
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=92.99 E-value=2.6 Score=46.25 Aligned_cols=55 Identities=15% Similarity=0.239 Sum_probs=31.4
Q ss_pred ccchHHHHHHHHHh-hc--CCcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 145 FHSTITVLKRAFEI-AT--SQTQVEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQR 201 (435)
Q Consensus 145 ls~~i~~l~~lFdI-LS--s~s~IDhPLC~eC~d~Lle~Ld~qle~~~~E~d~Y~~fL~~ 201 (435)
+..+|..+.+-..= +. +..+++. ..+=.+.+-+.++.-++..++|..++....+.
T Consensus 254 i~~~i~~l~~~i~~~~~~l~~l~l~~--~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~ 311 (569)
T PRK04778 254 IEKEIQDLKEQIDENLALLEELDLDE--AEEKNEEIQERIDQLYDILEREVKARKYVEKN 311 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcChHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55555555544322 11 1223333 56666667777777777788888887655443
No 58
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=92.93 E-value=4.1 Score=43.20 Aligned_cols=27 Identities=15% Similarity=0.437 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013864 178 SDKLDKEVDDVTRDIEAYEACLQRLEG 204 (435)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~fL~~L~~ 204 (435)
++.++.++..++.+...|...++.+++
T Consensus 174 ~~~~~~~i~~~~~~~~~~~~~~~~~~~ 200 (457)
T TIGR01000 174 KAQLDQQISKTDQKLQDYQALKNAISN 200 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444556666666666667666665554
No 59
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=92.90 E-value=2 Score=47.65 Aligned_cols=90 Identities=20% Similarity=0.287 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH--HHhHHHHHHHHHHHHHHHHHHHHHH
Q 013864 215 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEE-RYWQ--EFNNFQFQLIAHQEERDAISSKIEV 291 (435)
Q Consensus 215 l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~~eE~-~~w~--e~n~~q~qL~~~~ee~~sl~~q~~~ 291 (435)
..+++.+++..-++|..+...|+.+.++++++++.|+.+++.+...++ ..|+ ++..+++....++.++.--....+.
T Consensus 420 ~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~ 499 (652)
T COG2433 420 YEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEE 499 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666677777777777777777777777777776653333 3443 2333344444444444333444455
Q ss_pred HHHHHHHHhhccc
Q 013864 292 SQAHLELLKRTNV 304 (435)
Q Consensus 292 ~~~qLdkLrktNV 304 (435)
....|.+|++.+-
T Consensus 500 L~~~l~~l~k~~~ 512 (652)
T COG2433 500 LERKLAELRKMRK 512 (652)
T ss_pred HHHHHHHHHHHHh
Confidence 5555555555443
No 60
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=92.75 E-value=0.84 Score=43.20 Aligned_cols=23 Identities=22% Similarity=0.245 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 013864 178 SDKLDKEVDDVTRDIEAYEACLQ 200 (435)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~fL~ 200 (435)
+-.+..++.++.+.+.....-|.
T Consensus 76 ~~~l~~ELael~r~~~el~~~L~ 98 (194)
T PF08614_consen 76 LAKLQEELAELYRSKGELAQQLV 98 (194)
T ss_dssp -----------------------
T ss_pred ccccccccccccccccccccccc
Confidence 33456666666555555444443
No 61
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=92.69 E-value=6 Score=40.28 Aligned_cols=113 Identities=18% Similarity=0.279 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc----ccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 178 SDKLDKEVDDVTRDIEAYEACLQRLEG----EARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELK 253 (435)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~fL~~L~~----~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e 253 (435)
|++|+.|++.+.+|++.-+=-|+.|+. +...+ ++-..+...|+.|-..|....+.||+.+..+..++.--+.
T Consensus 20 IqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~---e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~- 95 (307)
T PF10481_consen 20 IQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKV---EEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKES- 95 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH---HHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHH-
Confidence 677888999998888775555555542 11100 1111233334555555666666666666655553332222
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCC
Q 013864 254 SKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLND 307 (435)
Q Consensus 254 ~~~L~~eE~~~w~e~n~~q~qL~~~~ee~~sl~~q~~~~~~qLdkLrktNV~Nd 307 (435)
.+|-+.-+|.......+.++..+.....+|+|.+..+.-.+
T Consensus 96 -------------qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~~~~ 136 (307)
T PF10481_consen 96 -------------QVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAASSGD 136 (307)
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 23334444444444555566667777778888888777444
No 62
>PRK10884 SH3 domain-containing protein; Provisional
Probab=92.66 E-value=2.9 Score=40.57 Aligned_cols=29 Identities=14% Similarity=0.163 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 013864 276 IAHQEERDAISSKIEVSQAHLELLKRTNV 304 (435)
Q Consensus 276 ~~~~ee~~sl~~q~~~~~~qLdkLrktNV 304 (435)
.++.+++..+.++.+.+..+++.++++..
T Consensus 142 ~~L~~~l~~~~~~~~~l~~~~~~~~~~~~ 170 (206)
T PRK10884 142 QKLKNQLIVAQKKVDAANLQLDDKQRTII 170 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455555555566666666443
No 63
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=92.62 E-value=6.2 Score=37.95 Aligned_cols=14 Identities=7% Similarity=0.482 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHH
Q 013864 181 LDKEVDDVTRDIEA 194 (435)
Q Consensus 181 Ld~qle~~~~E~d~ 194 (435)
++.+++++..|...
T Consensus 24 lq~~l~~l~~ENk~ 37 (194)
T PF15619_consen 24 LQRKLQELRKENKT 37 (194)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444433
No 64
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=92.59 E-value=9.3 Score=42.30 Aligned_cols=30 Identities=10% Similarity=0.324 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 013864 176 VLSDKLDKEVDDVTRDIEAYEACLQRLEGE 205 (435)
Q Consensus 176 ~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~ 205 (435)
.-++-|.+....++.|..-|+.++..++..
T Consensus 259 ~~~eslre~~~~L~~D~nK~~~y~~~~~~k 288 (581)
T KOG0995|consen 259 GKEESLREKKARLQDDVNKFQAYVSQMKSK 288 (581)
T ss_pred chHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 346677888888888998899888877643
No 65
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=92.59 E-value=0.49 Score=41.46 Aligned_cols=15 Identities=20% Similarity=0.580 Sum_probs=12.2
Q ss_pred cCCCceeeeecCCeee
Q 013864 304 VLNDAFPIWHDGEFGT 319 (435)
Q Consensus 304 V~Nd~F~I~hdG~fGT 319 (435)
+|++=|||.| -.||.
T Consensus 81 LY~EGFHICn-~~yG~ 95 (107)
T PF06156_consen 81 LYQEGFHICN-VHYGS 95 (107)
T ss_pred HHhcCeeeCc-HHhCC
Confidence 5999999988 56664
No 66
>PF15285 BH3: Beclin-1 BH3 domain, Bcl-2-interacting; PDB: 3BL2_C 2P1L_H 3DVU_C 2PON_A.
Probab=92.56 E-value=0.04 Score=36.50 Aligned_cols=20 Identities=20% Similarity=0.368 Sum_probs=16.6
Q ss_pred CcccchHHHHHHHHHhhcCC
Q 013864 143 SGFHSTITVLKRAFEIATSQ 162 (435)
Q Consensus 143 ~~ls~~i~~l~~lFdILSs~ 162 (435)
.++|+|+++.+.+|||+|++
T Consensus 6 e~ls~rlkvtg~lfdimsGq 25 (25)
T PF15285_consen 6 ENLSRRLKVTGDLFDIMSGQ 25 (25)
T ss_dssp HHHHHHHHHHHHHHCCTT--
T ss_pred cccchhheecccccccccCC
Confidence 35899999999999999985
No 67
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=92.51 E-value=4.3 Score=45.10 Aligned_cols=67 Identities=19% Similarity=0.227 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 181 LDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSK 255 (435)
Q Consensus 181 Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~ 255 (435)
|+. ++.+..+.+.|..-.+ ++. ...++.+++.+++.+...+..+++.++.+.+.+++++.+++.+..
T Consensus 181 l~~-~~~L~~dl~~~~~~~~---~~~----~~~~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~ 247 (650)
T TIGR03185 181 LDL-IDRLAGDLTNVLRRRK---KSE----LPSSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLE 247 (650)
T ss_pred cHH-HHHHHHHHHHHHHHHH---hcc----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444 6666666666644322 111 123345566666666666666666666666666666666655433
No 68
>PRK04863 mukB cell division protein MukB; Provisional
Probab=92.49 E-value=3 Score=50.95 Aligned_cols=37 Identities=22% Similarity=0.237 Sum_probs=23.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 013864 266 QEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRT 302 (435)
Q Consensus 266 ~e~n~~q~qL~~~~ee~~sl~~q~~~~~~qLdkLrkt 302 (435)
...++|.-++.+.+.++..++.++..++..++.+++.
T Consensus 442 ~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~ 478 (1486)
T PRK04863 442 DWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQA 478 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666777777777766666554
No 69
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=92.48 E-value=5.5 Score=43.60 Aligned_cols=123 Identities=11% Similarity=0.109 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 188 VTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQE 267 (435)
Q Consensus 188 ~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~~eE~~~w~e 267 (435)
.++|-..|--|+++|..-.. .-.-+.+++...-+|..++.+|+..|+.+...++.+++.+.-|.+.+++.-..|-..
T Consensus 193 ~~keq~~y~~~~KelrdtN~---q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da 269 (596)
T KOG4360|consen 193 EEKEQQLYGDCVKELRDTNT---QARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDA 269 (596)
T ss_pred hHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45666677777777652110 011234455555555666666666666666666666666655555555544444444
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCceeeee
Q 013864 268 FNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWH 313 (435)
Q Consensus 268 ~n~~q~qL~~~~ee~~sl~~q~~~~~~qLdkLrktNV~Nd~F~I~h 313 (435)
-..++.++.+.+++..-....++-++..|..|+.+...+.+..-.|
T Consensus 270 ~~ql~aE~~EleDkyAE~m~~~~EaeeELk~lrs~~~p~~~s~~~~ 315 (596)
T KOG4360|consen 270 QRQLTAELEELEDKYAECMQMLHEAEEELKCLRSCDAPKLISQEAL 315 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHHHH
Confidence 4445555566666666666778888889999999888887665444
No 70
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=92.22 E-value=4.3 Score=40.55 Aligned_cols=107 Identities=23% Similarity=0.408 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 013864 213 ADFLKEKLKIEEEERKLEAAIEETE-KQNAEVNAELKELELKSKRFK---ELEERYWQEFNNFQFQLIAHQEERDAISSK 288 (435)
Q Consensus 213 e~l~~e~~~Le~EE~~L~~eL~~lE-~e~~~l~~el~~le~e~~~L~---~eE~~~w~e~n~~q~qL~~~~ee~~sl~~q 288 (435)
..+..|+++--.+-+.|..++..++ .+..-++.+++.|..+..+|+ ++..++...| .-|+..++.+
T Consensus 160 d~l~~eLqkr~~~v~~l~~q~~k~~~~qv~~in~qlErLRL~krrlQl~g~Ld~~~q~~~----------~ae~seLq~r 229 (289)
T COG4985 160 DPLERELQKRLLEVETLRDQVDKMVEQQVRVINSQLERLRLEKRRLQLNGQLDDEFQQHY----------VAEKSELQKR 229 (289)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHH----------HHHHHHHHHH
Confidence 4566677776666666777776664 455567788888876666653 2222222222 1222333344
Q ss_pred HHHHHHHHHHHhhcccCCCceeeeecCCeeeeccccCCCCCCCCCChhHHHHHH
Q 013864 289 IEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGRLPKIPVEWDEINAAW 342 (435)
Q Consensus 289 ~~~~~~qLdkLrktNV~Nd~F~I~hdG~fGTINGlRLGrlp~~~V~W~EINAAw 342 (435)
+...+.+|+.|+. -++.-|-.|.|-. |+ .++|+-+|||-||
T Consensus 230 ~~~l~~~L~~L~~--e~~r~~l~~~Dm~---------G~--~~~vpLsei~~aw 270 (289)
T COG4985 230 LAQLQTELDALRA--ELERQFLYLVDMQ---------GE--TVSVPLSEILDAW 270 (289)
T ss_pred HHHHHHHHHHHhh--hhhhceEEEEccC---------CC--EeeccHHHHHHhh
Confidence 4444555555543 2556677888743 22 2578889999998
No 71
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=92.19 E-value=4.5 Score=36.23 Aligned_cols=32 Identities=22% Similarity=0.401 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 013864 175 RVLSDKLDKEVDDVTRDIEAYEACLQRLEGEA 206 (435)
Q Consensus 175 d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~ 206 (435)
-.+++.|..++...+.|+..++.-+.+|..+.
T Consensus 15 ~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r 46 (120)
T PF12325_consen 15 VQLVERLQSQLRRLEGELASLQEELARLEAER 46 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46889999999999999999999888887543
No 72
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=92.15 E-value=4.3 Score=47.67 Aligned_cols=71 Identities=20% Similarity=0.217 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 013864 218 EKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSK 288 (435)
Q Consensus 218 e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~~eE~~~w~e~n~~q~qL~~~~ee~~sl~~q 288 (435)
++.+++.....-..+++.++.+..++...|+.-+.-+.+++..|...-+.-..++..+...++...++-.+
T Consensus 484 ~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii~~~~~se~~l~~~a~~l~~~~~~s~~d~s~l~~k 554 (1041)
T KOG0243|consen 484 EKEKLKSKLQNKNKELESLKEELQQAKATLKEEEEIISQQEKSEEKLVDRATKLRRSLEESQDDLSSLFEK 554 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444455555555554444444445555555555555555666666665555555444
No 73
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=92.10 E-value=9.3 Score=34.91 Aligned_cols=30 Identities=27% Similarity=0.299 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013864 271 FQFQLIAHQEERDAISSKIEVSQAHLELLK 300 (435)
Q Consensus 271 ~q~qL~~~~ee~~sl~~q~~~~~~qLdkLr 300 (435)
|.++...++.+++..+.+|+-...++..++
T Consensus 113 ~eRkv~~le~~~~~~E~k~eel~~k~~~~k 142 (143)
T PF12718_consen 113 FERKVKALEQERDQWEEKYEELEEKYKEAK 142 (143)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHhc
Confidence 344455555566666666666666655544
No 74
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=92.05 E-value=10 Score=36.35 Aligned_cols=56 Identities=21% Similarity=0.262 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 013864 235 ETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIE 290 (435)
Q Consensus 235 ~lE~e~~~l~~el~~le~e~~~L~~eE~~~w~e~n~~q~qL~~~~ee~~sl~~q~~ 290 (435)
++|.+..+++..|.+++.+...+...-+..+.+.+.++-......++...++.+++
T Consensus 128 ~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F~ 183 (190)
T PF05266_consen 128 ELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELEFQ 183 (190)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444434445556666666655555555555555444
No 75
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=92.04 E-value=5.2 Score=46.79 Aligned_cols=63 Identities=29% Similarity=0.310 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 013864 223 EEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAI 285 (435)
Q Consensus 223 e~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~~eE~~~w~e~n~~q~qL~~~~ee~~sl 285 (435)
...+..|..++..++++..+...++++++..+......=.+|-.+++.++.++.++++.|..+
T Consensus 410 ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~l 472 (1200)
T KOG0964|consen 410 KEQENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKEL 472 (1200)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556667777888888888888888888877777666555567788888888888888877765
No 76
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=91.93 E-value=5.4 Score=43.82 Aligned_cols=74 Identities=16% Similarity=0.257 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 013864 217 KEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIE 290 (435)
Q Consensus 217 ~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~~eE~~~w~e~n~~q~qL~~~~ee~~sl~~q~~ 290 (435)
+++..++..-..+...+........++..++.++..+...++.+...++...+.+...-.+..+....+..++.
T Consensus 355 keL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~ 428 (569)
T PRK04778 355 KQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLH 428 (569)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444445555666666666666665556666666655554444444444433333
No 77
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=91.92 E-value=9.4 Score=44.86 Aligned_cols=38 Identities=16% Similarity=0.264 Sum_probs=23.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013864 264 YWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 301 (435)
Q Consensus 264 ~w~e~n~~q~qL~~~~ee~~sl~~q~~~~~~qLdkLrk 301 (435)
--.+|..++++..+++.++.+.+.++.....+++.|+.
T Consensus 813 ~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~ 850 (1174)
T KOG0933|consen 813 RENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKS 850 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666666666666666655555543
No 78
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=91.75 E-value=15 Score=36.57 Aligned_cols=72 Identities=21% Similarity=0.299 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 221 KIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAH 295 (435)
Q Consensus 221 ~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~~eE~~~w~e~n~~q~qL~~~~ee~~sl~~q~~~~~~q 295 (435)
.+..|..++...+..|+.+...+......|+.. +.+.|.+|=.+...++..+..++.++..+..++......
T Consensus 213 ~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~---l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~e 284 (312)
T PF00038_consen 213 SAKEELKELRRQIQSLQAELESLRAKNASLERQ---LRELEQRLDEEREEYQAEIAELEEELAELREEMARQLRE 284 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhHHHHHHhhhhHhhhhhhccccchhhhhhh---HHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444433 223333333444444444555555555554444444433
No 79
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.73 E-value=7 Score=40.85 Aligned_cols=55 Identities=18% Similarity=0.283 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 189 TRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKE 249 (435)
Q Consensus 189 ~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~ 249 (435)
++|.+.+..-...|+. .++++..-.++|+.++++|++++..|.++.+-+..-.++
T Consensus 224 eeeme~~~aeq~slkR------t~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~e 278 (365)
T KOG2391|consen 224 EEEMERLQAEQESLKR------TEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVRE 278 (365)
T ss_pred HHHHHHHHHHHHHHHh------hHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3455555555555542 245566666777777777777777777777766655544
No 80
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=91.72 E-value=10 Score=41.89 Aligned_cols=24 Identities=13% Similarity=0.081 Sum_probs=12.1
Q ss_pred cchHHHHHHHHHHHHHHHHHhhcC
Q 013864 396 RYDKAMTLFLSCLKDFAEFANSKD 419 (435)
Q Consensus 396 kFD~AMvaFLdCL~Q~~e~v~~~d 419 (435)
++-.=|...+.-|+.|++.-...|
T Consensus 353 ~mReec~~l~~Elq~LlD~ki~Ld 376 (546)
T KOG0977|consen 353 KMREECQQLSVELQKLLDTKISLD 376 (546)
T ss_pred HHHHHHHHHHHHHHHhhchHhHHH
Confidence 444445555555555555544433
No 81
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=91.72 E-value=15 Score=41.88 Aligned_cols=52 Identities=19% Similarity=0.294 Sum_probs=38.5
Q ss_pred HHHHHhhcCCcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 013864 153 KRAFEIATSQTQVEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEA 206 (435)
Q Consensus 153 ~~lFdILSs~s~IDhPLC~eC~d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~ 206 (435)
.+.|-.-+..+.| .|+-.|-+..+.. +++++..+.+|||+..+-.+.|+++.
T Consensus 388 ~e~~~~k~~~s~~-ssl~~e~~QRva~-lEkKvqa~~kERDalr~e~kslk~el 439 (961)
T KOG4673|consen 388 TEDLKRKSNESEV-SSLREEYHQRVAT-LEKKVQALTKERDALRREQKSLKKEL 439 (961)
T ss_pred HHHHHHHhhcccc-cchHHHHHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3444455555544 4777888877765 89999999999999999888777553
No 82
>PRK01156 chromosome segregation protein; Provisional
Probab=91.64 E-value=6.4 Score=45.05 Aligned_cols=35 Identities=17% Similarity=0.341 Sum_probs=25.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 013864 268 FNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRT 302 (435)
Q Consensus 268 ~n~~q~qL~~~~ee~~sl~~q~~~~~~qLdkLrkt 302 (435)
++.....+..+..+...++.++......++.|++.
T Consensus 411 ~~e~~~~~~~l~~~i~~l~~~i~~l~~~~~el~~~ 445 (895)
T PRK01156 411 LNEINVKLQDISSKVSSLNQRIRALRENLDELSRN 445 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666777778888888888888777777753
No 83
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=91.44 E-value=10 Score=33.91 Aligned_cols=33 Identities=12% Similarity=0.217 Sum_probs=20.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 267 EFNNFQFQLIAHQEERDAISSKIEVSQAHLELL 299 (435)
Q Consensus 267 e~n~~q~qL~~~~ee~~sl~~q~~~~~~qLdkL 299 (435)
....++.++...+...+.|..|-...-+||+.|
T Consensus 99 qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~l 131 (132)
T PF07926_consen 99 QKEQLEKELSELEQRIEDLNEQNKLLHDQLESL 131 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344556666666666666776666666666654
No 84
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=91.44 E-value=13 Score=35.42 Aligned_cols=81 Identities=21% Similarity=0.345 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---hcccc----cCCCHHHHHHHHHHHHHHHHH----------HHHHHHHHHH
Q 013864 176 VLSDKLDKEVDDVTRDIEAYEACLQRL---EGEAR----DVLSEADFLKEKLKIEEEERK----------LEAAIEETEK 238 (435)
Q Consensus 176 ~Lle~Ld~qle~~~~E~d~Y~~fL~~L---~~~~~----~~~~ee~l~~e~~~Le~EE~~----------L~~eL~~lE~ 238 (435)
.|+..|+.++.+-.+-|..+..-+..- ..... +.....++..-+.+|++|..+ |...|++.-.
T Consensus 16 ~Lv~~LQ~KV~qYr~rc~ele~~l~~~~~l~~~~~~~~~~~e~s~dLe~~l~rLeEEqqR~~~L~qvN~lLReQLEq~~~ 95 (182)
T PF15035_consen 16 QLVQRLQAKVLQYRKRCAELEQQLSASQVLESPSQRRRSEEEHSPDLEEALIRLEEEQQRSEELAQVNALLREQLEQARK 95 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCcCcccccccccccCcccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 577788888887777777777666211 10000 001123444455556555533 6667777777
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 013864 239 QNAEVNAELKELELKSKR 256 (435)
Q Consensus 239 e~~~l~~el~~le~e~~~ 256 (435)
....|..+|..+..+...
T Consensus 96 ~N~~L~~dl~klt~~~~~ 113 (182)
T PF15035_consen 96 ANEALQEDLQKLTQDWER 113 (182)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777888888777655554
No 85
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=91.24 E-value=8 Score=39.76 Aligned_cols=73 Identities=15% Similarity=0.255 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 180 KLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELK 253 (435)
Q Consensus 180 ~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e 253 (435)
.|-++-+++.++--.|-.-|+.+..... .++..++...+.++++........|++++++.+.+..+++..+..
T Consensus 38 ~~yQ~~EQAr~~A~~fA~~ld~~~~kl~-~Ms~~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~ 110 (301)
T PF06120_consen 38 YFYQNAEQARQEAIEFADSLDELKEKLK-EMSSTQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQQ 110 (301)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHH-hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888888888888888764432 356666666666666666666677777777777776666655443
No 86
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=91.14 E-value=12 Score=45.21 Aligned_cols=39 Identities=18% Similarity=0.187 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 212 EADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKEL 250 (435)
Q Consensus 212 ee~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~l 250 (435)
-+++..++..++.+.+.+..+++.+..+.+.+..+|..|
T Consensus 824 ~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~L 862 (1311)
T TIGR00606 824 VQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHL 862 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666666666666555555555555555555555
No 87
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=91.13 E-value=13 Score=36.77 Aligned_cols=68 Identities=15% Similarity=0.168 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 013864 228 KLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRT 302 (435)
Q Consensus 228 ~L~~eL~~lE~e~~~l~~el~~le~e~~~L~~eE~~~w~e~n~~q~qL~~~~ee~~sl~~q~~~~~~qLdkLrkt 302 (435)
++.+|.+.|..|+....++|+.+...+..|+..=.+-|.+.+..+.....+.+| |.-+..+++.+++.
T Consensus 36 e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~ee-------y~~Lk~~in~~R~e 103 (230)
T PF10146_consen 36 EYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEE-------YKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 344566666666666666666666666666666666677777776666665555 44444555555555
No 88
>PRK09039 hypothetical protein; Validated
Probab=90.95 E-value=12 Score=38.92 Aligned_cols=26 Identities=12% Similarity=0.095 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 175 RVLSDKLDKEVDDVTRDIEAYEACLQ 200 (435)
Q Consensus 175 d~Lle~Ld~qle~~~~E~d~Y~~fL~ 200 (435)
+.-+..+..+++.+++++..-+..+.
T Consensus 80 ~~~l~~l~~~l~~a~~~r~~Le~~~~ 105 (343)
T PRK09039 80 QDSVANLRASLSAAEAERSRLQALLA 105 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44456667777777776665554444
No 89
>PRK01156 chromosome segregation protein; Provisional
Probab=90.85 E-value=9.2 Score=43.83 Aligned_cols=34 Identities=15% Similarity=0.266 Sum_probs=16.3
Q ss_pred HHHHHhhcCCcccCCcchHHHHHHHHHHHHHHHHHH
Q 013864 153 KRAFEIATSQTQVEQPLCLECMRVLSDKLDKEVDDV 188 (435)
Q Consensus 153 ~~lFdILSs~s~IDhPLC~eC~d~Lle~Ld~qle~~ 188 (435)
..+||-+.+-..+. -|.+.....+..++.++...
T Consensus 152 ~~~ld~~~~~~~~~--~~~~~~~~~~~~~~~ei~~l 185 (895)
T PRK01156 152 KKILDEILEINSLE--RNYDKLKDVIDMLRAEISNI 185 (895)
T ss_pred HHHHHHHhChHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 34444444333332 25555555565555555444
No 90
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=90.69 E-value=13 Score=40.88 Aligned_cols=78 Identities=22% Similarity=0.311 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013864 222 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 301 (435)
Q Consensus 222 Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~~eE~~~w~e~n~~q~qL~~~~ee~~sl~~q~~~~~~qLdkLrk 301 (435)
...|-+.|...|...|++++.+..+++.+......|++ +.-....+++-||....|.+.+++.++.....+++.||.
T Consensus 439 f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqD---EL~TTr~NYE~QLs~MSEHLasmNeqL~~Q~eeI~~LK~ 515 (518)
T PF10212_consen 439 FYAECRALQKRLESAEKEKESLEEELKEANQNISRLQD---ELETTRRNYEEQLSMMSEHLASMNEQLAKQREEIQTLKL 515 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45566667777777777777777777777665555543 333566677888888999999999999999999999985
Q ss_pred c
Q 013864 302 T 302 (435)
Q Consensus 302 t 302 (435)
.
T Consensus 516 ~ 516 (518)
T PF10212_consen 516 A 516 (518)
T ss_pred c
Confidence 4
No 91
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=90.61 E-value=5.5 Score=47.89 Aligned_cols=15 Identities=20% Similarity=0.565 Sum_probs=9.9
Q ss_pred eeecCCeee-eccccC
Q 013864 311 IWHDGEFGT-INNFRL 325 (435)
Q Consensus 311 I~hdG~fGT-INGlRL 325 (435)
+|..-.-|| |.++|+
T Consensus 1149 ~w~~~~~~~~~~~i~~ 1164 (1311)
T TIGR00606 1149 LWRSTYRGQDIEYIEI 1164 (1311)
T ss_pred HHHHHcCccHHHHhhc
Confidence 565433344 899999
No 92
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=90.60 E-value=16 Score=39.10 Aligned_cols=33 Identities=15% Similarity=0.288 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 225 EERKLEAAIEETEKQNAEVNAELKELELKSKRF 257 (435)
Q Consensus 225 EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L 257 (435)
|.+...+++.++.+++....+++..+.++..+|
T Consensus 117 e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~l 149 (499)
T COG4372 117 EREAVRQELAAARQNLAKAQQELARLTKQAQDL 149 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333
No 93
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=90.50 E-value=16 Score=34.75 Aligned_cols=67 Identities=31% Similarity=0.399 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 226 ERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLEL 298 (435)
Q Consensus 226 E~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~~eE~~~w~e~n~~q~qL~~~~ee~~sl~~q~~~~~~qLdk 298 (435)
...+..++.+|+++..++..++.+++.+.+.++..+++. .+.....+++|.+-+..+..+..++|++
T Consensus 122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~------~~~~~k~~~~ei~~lk~~~~ql~~~l~~ 188 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEEL------RQEEEKKHQEEIDFLKKQNQQLKAQLEQ 188 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345556666666666666666666655544444333211 1122233455555555555555555543
No 94
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=90.43 E-value=23 Score=36.30 Aligned_cols=126 Identities=13% Similarity=0.151 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCC-HHH---HHHHHHHHHHHHHHHHHHHHHHHHH-------HHH
Q 013864 174 MRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLS-EAD---FLKEKLKIEEEERKLEAAIEETEKQ-------NAE 242 (435)
Q Consensus 174 ~d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~-ee~---l~~e~~~Le~EE~~L~~eL~~lE~e-------~~~ 242 (435)
+..-++.+++|++.++++.+.-+.-|...+.... .++ +.+ ....+..|+.+..+++.+|.++... ...
T Consensus 168 ~~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~-~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~~~~~~~P~v~~ 246 (362)
T TIGR01010 168 RKDTIAFAENEVKEAEQRLNATKAELLKYQIKNK-VFDPKAQSSAQLSLISTLEGELIRVQAQLAQLRSITPEQNPQVPS 246 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchHH
Confidence 4556677888888877777777666666654332 122 111 2233444555555555555554321 122
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013864 243 VNAELKELELKSKRFKE-LEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLK 300 (435)
Q Consensus 243 l~~el~~le~e~~~L~~-eE~~~w~e~n~~q~qL~~~~ee~~sl~~q~~~~~~qLdkLr 300 (435)
+.+++..++.++.+... .....=...+....++.+++.+.+.....|+.+...++.++
T Consensus 247 l~~~i~~l~~~i~~e~~~i~~~~~~~l~~~~~~~~~L~re~~~a~~~y~~~l~r~~~a~ 305 (362)
T TIGR01010 247 LQARIKSLRKQIDEQRNQLSGGLGDSLNEQTADYQRLVLQNELAQQQLKAALTSLQQTR 305 (362)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444433322211 00000113566666777777788888888888888887777
No 95
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=90.40 E-value=7.9 Score=46.98 Aligned_cols=10 Identities=0% Similarity=0.069 Sum_probs=5.2
Q ss_pred HHHHHHHHhh
Q 013864 150 TVLKRAFEIA 159 (435)
Q Consensus 150 ~~l~~lFdIL 159 (435)
.....+|..|
T Consensus 180 ~ry~~l~~~l 189 (1353)
T TIGR02680 180 ERYAALLDLL 189 (1353)
T ss_pred HHHHHHHHHH
Confidence 3444555555
No 96
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=90.34 E-value=11 Score=39.59 Aligned_cols=45 Identities=27% Similarity=0.299 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 214 DFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (435)
Q Consensus 214 ~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~ 258 (435)
++.+-+++++..|+-+-.+++.+-.+...+.+++.+++.+.....
T Consensus 249 ~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s 293 (359)
T PF10498_consen 249 DISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQAS 293 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345556667777777777777777777777666666666555444
No 97
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=90.00 E-value=18 Score=41.26 Aligned_cols=30 Identities=13% Similarity=0.253 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013864 175 RVLSDKLDKEVDDVTRDIEAYEACLQRLEG 204 (435)
Q Consensus 175 d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~ 204 (435)
...+..|+.+++.+..|+..=...-+.|+.
T Consensus 417 ~~a~~rLE~dvkkLraeLq~~Rq~E~ELRs 446 (697)
T PF09726_consen 417 PDAISRLEADVKKLRAELQSSRQSEQELRS 446 (697)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 334446777777777777766555555543
No 98
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=89.95 E-value=17 Score=45.73 Aligned_cols=14 Identities=14% Similarity=0.508 Sum_probs=8.2
Q ss_pred CCCCce--eeccCCCC
Q 013864 68 RMDNSF--VVLPKQRP 81 (435)
Q Consensus 68 ~~d~s~--vvl~~~~~ 81 (435)
..-+-| .++|.+..
T Consensus 656 ~T~phFvRCiIPn~~K 671 (1930)
T KOG0161|consen 656 STHPHFVRCIIPNEEK 671 (1930)
T ss_pred cCCCceeEEeccCccc
Confidence 344466 67887643
No 99
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=89.93 E-value=12 Score=34.46 Aligned_cols=22 Identities=14% Similarity=0.397 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 013864 182 DKEVDDVTRDIEAYEACLQRLE 203 (435)
Q Consensus 182 d~qle~~~~E~d~Y~~fL~~L~ 203 (435)
..++..+.++.+....-...|+
T Consensus 9 ~~kLK~~~~e~dsle~~v~~LE 30 (140)
T PF10473_consen 9 EEKLKESESEKDSLEDHVESLE 30 (140)
T ss_pred HHHHHHHHHhHhhHHHHHHHHH
Confidence 3455555555555555444444
No 100
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=89.76 E-value=7.3 Score=44.20 Aligned_cols=21 Identities=24% Similarity=0.253 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 013864 233 IEETEKQNAEVNAELKELELK 253 (435)
Q Consensus 233 L~~lE~e~~~l~~el~~le~e 253 (435)
..+||.|...|..|++..+++
T Consensus 547 ~~~lE~E~~~lr~elk~kee~ 567 (697)
T PF09726_consen 547 RRQLESELKKLRRELKQKEEQ 567 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444433
No 101
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=89.74 E-value=17 Score=39.45 Aligned_cols=8 Identities=50% Similarity=0.517 Sum_probs=5.7
Q ss_pred cCCCCCce
Q 013864 66 STRMDNSF 73 (435)
Q Consensus 66 ~~~~d~s~ 73 (435)
--|||.|.
T Consensus 182 LERMD~s~ 189 (493)
T KOG0804|consen 182 LERMDSST 189 (493)
T ss_pred HhhcCccc
Confidence 45788876
No 102
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=89.66 E-value=4.7 Score=43.72 Aligned_cols=74 Identities=15% Similarity=0.195 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013864 227 RKLEAAIEETEKQNAEVNAELKELELKSKRFKELEE-RYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLK 300 (435)
Q Consensus 227 ~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~~eE~-~~w~e~n~~q~qL~~~~ee~~sl~~q~~~~~~qLdkLr 300 (435)
++++.++..|+++.+.+.+|-+.|+++...+++.-. .+-.+...++.+..+++++++.+..++...+.+|+-+.
T Consensus 69 k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l~~~~ 143 (472)
T TIGR03752 69 KELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQRRLAGVL 143 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 334444444444444444444444443333332211 22222334444555556666666666666666666443
No 103
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=89.62 E-value=9.2 Score=36.19 Aligned_cols=11 Identities=27% Similarity=0.296 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 013864 274 QLIAHQEERDA 284 (435)
Q Consensus 274 qL~~~~ee~~s 284 (435)
.+..++.|.+.
T Consensus 166 k~~~l~~En~~ 176 (194)
T PF08614_consen 166 KLRKLEEENRE 176 (194)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 104
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=89.54 E-value=20 Score=37.16 Aligned_cols=7 Identities=29% Similarity=0.268 Sum_probs=2.7
Q ss_pred hHHHHHH
Q 013864 269 NNFQFQL 275 (435)
Q Consensus 269 n~~q~qL 275 (435)
|.+..+.
T Consensus 181 N~L~Kqm 187 (310)
T PF09755_consen 181 NRLWKQM 187 (310)
T ss_pred HHHHHHH
Confidence 3333333
No 105
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=89.51 E-value=16 Score=37.11 Aligned_cols=79 Identities=15% Similarity=0.274 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhh
Q 013864 225 EERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAIS---SKIEVSQAHLELLKR 301 (435)
Q Consensus 225 EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~~eE~~~w~e~n~~q~qL~~~~ee~~sl~---~q~~~~~~qLdkLrk 301 (435)
+...++.....|+.+..++.-|++.++. +++.+--+|++..+.+..++.......+++. ..++++..-|++-++
T Consensus 53 qL~q~etrnrdl~t~nqrl~~E~e~~Ke---k~e~q~~q~y~q~s~Leddlsqt~aikeql~kyiReLEQaNDdLErakR 129 (333)
T KOG1853|consen 53 QLDQLETRNRDLETRNQRLTTEQERNKE---KQEDQRVQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQANDDLERAKR 129 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHhhh
Confidence 3333344444444444444443333332 2333334566666666665555444444332 456677777888777
Q ss_pred cccCC
Q 013864 302 TNVLN 306 (435)
Q Consensus 302 tNV~N 306 (435)
--||.
T Consensus 130 ati~s 134 (333)
T KOG1853|consen 130 ATIYS 134 (333)
T ss_pred hhhhh
Confidence 66654
No 106
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=89.44 E-value=6.8 Score=43.72 Aligned_cols=77 Identities=16% Similarity=0.261 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 217 KEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKR--FKELEE-RYWQEFNNFQFQLIAHQEERDAISSKIEVSQ 293 (435)
Q Consensus 217 ~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~--L~~eE~-~~w~e~n~~q~qL~~~~ee~~sl~~q~~~~~ 293 (435)
+..++|+.|-..|..+|++++++.+.|.+++..+..+... ....|- ..-+..+.++..|.+-..+.+.|+.++..+.
T Consensus 429 ~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 429 ETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666666666666666666666655443321 111111 1223566788888888888888877776655
No 107
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=89.37 E-value=18 Score=34.90 Aligned_cols=45 Identities=18% Similarity=0.323 Sum_probs=23.4
Q ss_pred HHHHHHHhhcCCc-----ccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 151 VLKRAFEIATSQT-----QVEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEA 197 (435)
Q Consensus 151 ~l~~lFdILSs~s-----~IDhPLC~eC~d~Lle~Ld~qle~~~~E~d~Y~~ 197 (435)
.+++|++|++++- .+.-|. .=.+.++..|+..+..+.........
T Consensus 3 if~Rl~~iv~a~~n~~~dk~EDP~--~~l~q~irem~~~l~~ar~~lA~~~a 52 (219)
T TIGR02977 3 IFSRFADIVNSNLNALLDKAEDPE--KMIRLIIQEMEDTLVEVRTTSARTIA 52 (219)
T ss_pred HHHHHHHHHHHHHHHHHHhccCHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666665421 122343 24566677777766666555444433
No 108
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=89.25 E-value=26 Score=36.41 Aligned_cols=167 Identities=13% Similarity=0.240 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc-------cc---------c--CC----CHHHH-------HHHHHHHHHHHHHHH
Q 013864 180 KLDKEVDDVTRDIEAYEACLQRLEGE-------AR---------D--VL----SEADF-------LKEKLKIEEEERKLE 230 (435)
Q Consensus 180 ~Ld~qle~~~~E~d~Y~~fL~~L~~~-------~~---------~--~~----~ee~l-------~~e~~~Le~EE~~L~ 230 (435)
.|-++|+....|+|.|..-.+.|... .. . .. ....+ .++...|..|-..|.
T Consensus 13 IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev~~Lr 92 (319)
T PF09789_consen 13 ILSQELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEVEELR 92 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47778888888888887766555411 00 0 00 01122 233445666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH------------HHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 231 AAIEETEKQNAEVNAELKELEL------------KSKRF-KELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLE 297 (435)
Q Consensus 231 ~eL~~lE~e~~~l~~el~~le~------------e~~~L-~~eE~~~w~e~n~~q~qL~~~~ee~~sl~~q~~~~~~qLd 297 (435)
+.|.+++.+..-+...+...+. +.++| .++ ++.+..+..+++++....+|..-+....++-+...+
T Consensus 93 qkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qL-Ek~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~ 171 (319)
T PF09789_consen 93 QKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQL-EKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAH 171 (319)
T ss_pred HHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666665555555544331 11122 233 245556666666666666666666655566665566
Q ss_pred HHhhcccCCCceee--eecCCeeeeccccCCCCCCCCCChhHHHHHHHHHHHHHHHHHhhc
Q 013864 298 LLKRTNVLNDAFPI--WHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMCQYF 356 (435)
Q Consensus 298 kLrktNV~Nd~F~I--~hdG~fGTINGlRLGrlp~~~V~W~EINAAwGQ~~LLL~tla~kl 356 (435)
||..- ..+| +++..+..|.+|-+=. ..==..|+.+-.-.-|+..+|.+|-
T Consensus 172 RLN~E-----Ln~~L~g~~~rivDIDaLi~EN----RyL~erl~q~qeE~~l~k~~i~KYK 223 (319)
T PF09789_consen 172 RLNHE-----LNYILNGDENRIVDIDALIMEN----RYLKERLKQLQEEKELLKQTINKYK 223 (319)
T ss_pred HHHHH-----HHHHhCCCCCCcccHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65321 1111 1112333344443221 2223468888899999999999864
No 109
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=89.24 E-value=25 Score=35.01 Aligned_cols=35 Identities=23% Similarity=0.346 Sum_probs=15.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013864 266 QEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLK 300 (435)
Q Consensus 266 ~e~n~~q~qL~~~~ee~~sl~~q~~~~~~qLdkLr 300 (435)
.+.+.+..++....-.+..+++++...+.+|+.|+
T Consensus 103 ~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~ 137 (312)
T PF00038_consen 103 EELESLRKDLDEETLARVDLENQIQSLKEELEFLK 137 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444455555555444444
No 110
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=89.18 E-value=16 Score=32.73 Aligned_cols=43 Identities=16% Similarity=0.277 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 215 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 257 (435)
Q Consensus 215 l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L 257 (435)
+...+..++.|...+..++..+++++.++.+||-.+-.+.+++
T Consensus 21 L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~ 63 (120)
T PF12325_consen 21 LQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEEL 63 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666666666666666666666666655444444
No 111
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=89.04 E-value=20 Score=33.64 Aligned_cols=65 Identities=18% Similarity=0.287 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 013864 215 FLKEKLKIEEEERKLEAAIEETEKQNAE--------VNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQ 279 (435)
Q Consensus 215 l~~e~~~Le~EE~~L~~eL~~lE~e~~~--------l~~el~~le~e~~~L~~eE~~~w~e~n~~q~qL~~~~ 279 (435)
..++..+|+..++.....|-++.+.... .=.+-..++.++.-+.+.|.+.-.-.+.+++.|..+.
T Consensus 46 ~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe~A~~lQ~~L~~~re~E~qLr~rRD~LErrl~~l~ 118 (159)
T PF05384_consen 46 VIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYEEAHELQVRLAMLREREKQLRERRDELERRLRNLE 118 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666666544422 1122233344444445556555555666665554443
No 112
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=89.03 E-value=3 Score=46.23 Aligned_cols=71 Identities=30% Similarity=0.382 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCC
Q 013864 228 KLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLND 307 (435)
Q Consensus 228 ~L~~eL~~lE~e~~~l~~el~~le~e~~~L~~eE~~~w~e~n~~q~qL~~~~ee~~sl~~q~~~~~~qLdkLrktNV~Nd 307 (435)
....||-++|..+++++.+|+++..++++++++ +.+.|-|+..++..+++++.+++.|+.+|--.-
T Consensus 90 sVs~EL~ele~krqel~seI~~~n~kiEelk~~--------------i~~~q~eL~~Lk~~ieqaq~~~~El~~~n~pkl 155 (907)
T KOG2264|consen 90 SVSLELTELEVKRQELNSEIEEINTKIEELKRL--------------IPQKQLELSALKGEIEQAQRQLEELRETNNPKL 155 (907)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH--------------HHHhHHHHHHHHhHHHHHHHHHHHHHhhcCCce
Confidence 334567777777777777777776666555433 233345667778889999999999999998777
Q ss_pred ceeee
Q 013864 308 AFPIW 312 (435)
Q Consensus 308 ~F~I~ 312 (435)
.-.|+
T Consensus 156 ~LP~s 160 (907)
T KOG2264|consen 156 FLPFS 160 (907)
T ss_pred eeccc
Confidence 66666
No 113
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=88.98 E-value=24 Score=44.43 Aligned_cols=33 Identities=21% Similarity=0.239 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 235 ETEKQNAEVNAELKELELKSKRFKELEERYWQE 267 (435)
Q Consensus 235 ~lE~e~~~l~~el~~le~e~~~L~~eE~~~w~e 267 (435)
+++.+...++.+++.|+.++..+++.....-++
T Consensus 954 k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~ke 986 (1930)
T KOG0161|consen 954 KLELEKNAAENKLKNLEEEINSLDENISKLSKE 986 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444443333333333
No 114
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=88.87 E-value=32 Score=35.68 Aligned_cols=58 Identities=33% Similarity=0.511 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccc---CCC-HH-----HHHHHHHHHHHHHHHHHHHHH
Q 013864 177 LSDKLDKEVDDVTRDIEAYEACLQRLEGEARD---VLS-EA-----DFLKEKLKIEEEERKLEAAIE 234 (435)
Q Consensus 177 Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~---~~~-ee-----~l~~e~~~Le~EE~~L~~eL~ 234 (435)
++..|.+++..+++|...|...|.+|..+..+ .+. +. -|.+.+.+|+.|.+.|...|+
T Consensus 136 ~V~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~ 202 (310)
T PF09755_consen 136 LVNKLQKKIERLEKEKSAKQEELERLRREKVDLENTLEQEQEALVNRLWKQMDKLEAEKRRLQEKLE 202 (310)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 46677777888888888888888877654422 010 11 134566667777777776665
No 115
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=88.82 E-value=22 Score=38.85 Aligned_cols=26 Identities=19% Similarity=0.416 Sum_probs=14.8
Q ss_pred CCcccchHHHHHHHHHhhcCCcccCCcchHH
Q 013864 142 NSGFHSTITVLKRAFEIATSQTQVEQPLCLE 172 (435)
Q Consensus 142 ~~~ls~~i~~l~~lFdILSs~s~IDhPLC~e 172 (435)
+-+|++|+. ..+..|| .++.||.|.+
T Consensus 153 ~f~F~~r~E--~eV~~~l---KnL~YPfl~s 178 (622)
T COG5185 153 GFGFTKRIE--NEVYQIL---KNLRYPFLES 178 (622)
T ss_pred CCCcchhhH--HHHHHHH---HhcCCchhhh
Confidence 456666664 3455555 3466777765
No 116
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=88.79 E-value=6.6 Score=38.61 Aligned_cols=50 Identities=26% Similarity=0.403 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 013864 222 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNF 271 (435)
Q Consensus 222 Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~~eE~~~w~e~n~~ 271 (435)
+++|...+.++++.|+.+.++...+++.++.+..+|..+-+..-++|+.+
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrL 198 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRL 198 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHH
Confidence 44455555555555555555555555555555555544444444444433
No 117
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=88.69 E-value=15 Score=39.63 Aligned_cols=29 Identities=38% Similarity=0.420 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 013864 274 QLIAHQEERDAISSKIEVSQAHLELLKRT 302 (435)
Q Consensus 274 qL~~~~ee~~sl~~q~~~~~~qLdkLrkt 302 (435)
.|..|++++.+.+.-++-...+|++|+..
T Consensus 361 ~Lrrfq~ekeatqELieelrkelehlr~~ 389 (502)
T KOG0982|consen 361 ILRRFQEEKEATQELIEELRKELEHLRRR 389 (502)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 35567888888877777777888888765
No 118
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=88.63 E-value=19 Score=41.15 Aligned_cols=36 Identities=19% Similarity=0.227 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 215 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKEL 250 (435)
Q Consensus 215 l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~l 250 (435)
+..+++.++..|.+|.++..+||.|.-.+.+++.-|
T Consensus 81 lr~e~ke~K~rE~rll~dyselEeENislQKqvs~L 116 (717)
T PF09730_consen 81 LREEIKEYKFREARLLQDYSELEEENISLQKQVSVL 116 (717)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 345556666677777777777777776666655555
No 119
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=88.31 E-value=21 Score=40.17 Aligned_cols=23 Identities=22% Similarity=0.274 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCC
Q 013864 337 EINAAWGQACLLLHTMCQYFRPK 359 (435)
Q Consensus 337 EINAAwGQ~~LLL~tla~kl~~k 359 (435)
|..+-+|++-.-|..+-.++..+
T Consensus 199 eL~~kl~~l~~~l~~~~e~le~K 221 (617)
T PF15070_consen 199 ELQKKLGELQEKLHNLKEKLELK 221 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 66677777777777776666444
No 120
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=88.27 E-value=20 Score=32.74 Aligned_cols=28 Identities=25% Similarity=0.343 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 223 EEEERKLEAAIEETEKQNAEVNAELKEL 250 (435)
Q Consensus 223 e~EE~~L~~eL~~lE~e~~~l~~el~~l 250 (435)
+.|...|...+..||.+.+.+..++..+
T Consensus 34 E~EI~sL~~K~~~lE~eld~~~~~l~~~ 61 (143)
T PF12718_consen 34 EQEITSLQKKNQQLEEELDKLEEQLKEA 61 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444333
No 121
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=88.20 E-value=18 Score=39.92 Aligned_cols=181 Identities=20% Similarity=0.264 Sum_probs=101.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------ccc------------cCCCHHH------HHHHHHH
Q 013864 170 CLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEG----------EAR------------DVLSEAD------FLKEKLK 221 (435)
Q Consensus 170 C~eC~d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~----------~~~------------~~~~ee~------l~~e~~~ 221 (435)
+.+=.+.+-+.++.=++.+++|.+++...-+.+.. ... =.+++.+ +.+++..
T Consensus 276 ~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~ 355 (560)
T PF06160_consen 276 VEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEKQLKE 355 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 66666667777777777788888876554443321 100 0111111 1222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013864 222 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 301 (435)
Q Consensus 222 Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~~eE~~~w~e~n~~q~qL~~~~ee~~sl~~q~~~~~~qLdkLrk 301 (435)
|+..-..+...+.+-..-...+...++++...+..++++-..+|.....+..+-....+....+...+...+..+++.+=
T Consensus 356 l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek~nL 435 (560)
T PF06160_consen 356 LEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLEKSNL 435 (560)
T ss_pred HHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 33333333333333333344567777777788888888888888888888888877777777777777777776654321
Q ss_pred ccc---CCCceeeeecCCeeeeccccCCCCCCCCCChhHHHHHHHHHHHHHHHHHhh
Q 013864 302 TNV---LNDAFPIWHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMCQY 355 (435)
Q Consensus 302 tNV---~Nd~F~I~hdG~fGTINGlRLGrlp~~~V~W~EINAAwGQ~~LLL~tla~k 355 (435)
-.+ |-+.|.-..+ .+.++. ..|..+|++-++||.-+=.+.--+.++..+
T Consensus 436 PGlp~~y~~~~~~~~~-~i~~l~----~~L~~~pinm~~v~~~l~~a~~~v~~L~~~ 487 (560)
T PF06160_consen 436 PGLPEDYLDYFFDVSD-EIEELS----DELNQVPINMDEVNKQLEEAEDDVETLEEK 487 (560)
T ss_pred CCCCHHHHHHHHHHHH-HHHHHH----HHHhcCCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 111 1112211111 111111 113346888999998888776666655443
No 122
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=88.13 E-value=39 Score=39.45 Aligned_cols=79 Identities=14% Similarity=0.216 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 013864 224 EEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRT 302 (435)
Q Consensus 224 ~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~~eE~~~w~e~n~~q~qL~~~~ee~~sl~~q~~~~~~qLdkLrkt 302 (435)
++...|.....+..++.+....-+.+++++..+|++.-++.-++.........+..+..+++...+...+.++++|+++
T Consensus 438 ~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~ 516 (980)
T KOG0980|consen 438 QEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRT 516 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444444444443333334333333344444555566677777778888888887
No 123
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=88.12 E-value=35 Score=38.09 Aligned_cols=43 Identities=23% Similarity=0.184 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 216 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (435)
Q Consensus 216 ~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~ 258 (435)
.+++..++.+..++..++..++.+..++..+++.++.++.++.
T Consensus 427 ~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 469 (650)
T TIGR03185 427 LEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDEKT 469 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555666666666666666666555554443
No 124
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=87.91 E-value=20 Score=40.94 Aligned_cols=78 Identities=22% Similarity=0.311 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 013864 215 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELE---ERYWQEFNNFQFQLIAHQEERDAISSKIEV 291 (435)
Q Consensus 215 l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~~eE---~~~w~e~n~~q~qL~~~~ee~~sl~~q~~~ 291 (435)
+.++...++.+..+|+.+|+++.--...+-++..+||+|--.|+.+= ++-.-+|-.++.++..+++|...++.|++-
T Consensus 67 ~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee 146 (717)
T PF09730_consen 67 LRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEE 146 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445556666666666666665444444444444443322222110 112235566666666777776666655544
Q ss_pred H
Q 013864 292 S 292 (435)
Q Consensus 292 ~ 292 (435)
+
T Consensus 147 ~ 147 (717)
T PF09730_consen 147 A 147 (717)
T ss_pred H
Confidence 3
No 125
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=87.79 E-value=18 Score=35.04 Aligned_cols=76 Identities=20% Similarity=0.200 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 013864 228 KLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTN 303 (435)
Q Consensus 228 ~L~~eL~~lE~e~~~l~~el~~le~e~~~L~~eE~~~w~e~n~~q~qL~~~~ee~~sl~~q~~~~~~qLdkLrktN 303 (435)
+|+.+-..+|+..++-++....|+..+..-..++.+.-..-...+.+...++.++....+|++.++.++..|++.+
T Consensus 109 ~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~q~ 184 (192)
T PF11180_consen 109 QLEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQRQA 184 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333334444444444444444444333333333333333333445566667777777788888888888777653
No 126
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=87.74 E-value=18 Score=41.88 Aligned_cols=147 Identities=16% Similarity=0.186 Sum_probs=76.0
Q ss_pred HHHHHHHhhcCCcccCCc--chHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHhcccccCCCHHHHH--
Q 013864 151 VLKRAFEIATSQTQVEQP--LCLECMRVLSDKLDKEVDDVTRDIEAY----------EACLQRLEGEARDVLSEADFL-- 216 (435)
Q Consensus 151 ~l~~lFdILSs~s~IDhP--LC~eC~d~Lle~Ld~qle~~~~E~d~Y----------~~fL~~L~~~~~~~~~ee~l~-- 216 (435)
.++.+...||.--.+-+| .|.+=.......+..=+..+.+|.+.- ...++++..+. +.++..
T Consensus 520 ~L~~m~~~L~~~~e~~dp~~~r~~~~~~~~~~v~~~~~~v~~E~krilaRk~liE~rKe~~E~~~~~r----e~Eea~~q 595 (988)
T KOG2072|consen 520 QLTAMAESLSKVVEELDPVIIRNSRAKKKEGAVTNYLKNVDKEHKRILARKSLIEKRKEDLEKQNVER----EAEEAQEQ 595 (988)
T ss_pred HHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhHHHHHHHHH----HHHHHHHH
Confidence 345556667766666677 487777666655555555555555443 22333332111 111111
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH-------------HHHHHHhHHHHHHHHH
Q 013864 217 --KEKLKIEEEERKLEAAIEETEKQNAEVNAE---LKELELKSKRFKELEE-------------RYWQEFNNFQFQLIAH 278 (435)
Q Consensus 217 --~e~~~Le~EE~~L~~eL~~lE~e~~~l~~e---l~~le~e~~~L~~eE~-------------~~w~e~n~~q~qL~~~ 278 (435)
++.+.-+.|+.+|.+++++=|+++...+.+ .+++++....+.+-|. +-..--.-.+.++.++
T Consensus 596 ~~e~~~~r~aE~kRl~ee~~Ere~~R~l~E~e~i~~k~~ke~~~~~~~te~~aK~~k~~d~ed~e~lD~d~i~~~q~eel 675 (988)
T KOG2072|consen 596 AKEQRQAREAEEKRLIEEKKEREAKRILREKEAIRKKELKERLEQLKQTEVGAKGGKEKDLEDLEKLDADQIKARQIEEL 675 (988)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCChHHhhhcCHHHHHHHHHHHH
Confidence 111223566777777777666555444333 2222222222221111 1111112234677788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 013864 279 QEERDAISSKIEVSQAHLELLKR 301 (435)
Q Consensus 279 ~ee~~sl~~q~~~~~~qLdkLrk 301 (435)
+.++..++.++.+.-..+|.+.+
T Consensus 676 ~Ke~kElq~rL~~q~KkiDh~ER 698 (988)
T KOG2072|consen 676 EKERKELQSRLQYQEKKIDHLER 698 (988)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHH
Confidence 88888888888888777666654
No 127
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=87.70 E-value=55 Score=37.11 Aligned_cols=119 Identities=11% Similarity=0.090 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-CCCH--HHHHHHHHHHHHHHHHHHHHHH--------------
Q 013864 172 ECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARD-VLSE--ADFLKEKLKIEEEERKLEAAIE-------------- 234 (435)
Q Consensus 172 eC~d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~-~~~e--e~l~~e~~~Le~EE~~L~~eL~-------------- 234 (435)
+=+...++.|++|+..+.++.+.-+.-|+..+.+..- .++. ..+..++.+++.+...+..++.
T Consensus 263 ~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~~~ea~~~l~~~~~l~~ql~~l~~~~~~l~~~~~~~hP~v~ 342 (726)
T PRK09841 263 AQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQIVNVDNQLNELTFREAEISQLYKKDHPTYR 342 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCchHH
Confidence 3455567778888888888777777777666543211 1111 1112233333333333332222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013864 235 ETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 301 (435)
Q Consensus 235 ~lE~e~~~l~~el~~le~e~~~L~~eE~~~w~e~n~~q~qL~~~~ee~~sl~~q~~~~~~qLdkLrk 301 (435)
.+..+.+.+++++..++.+.. .....+.++.+++.+.+..+..|....++.+.++=
T Consensus 343 ~l~~~~~~L~~~~~~l~~~~~-----------~~p~~e~~~~~L~R~~~~~~~lY~~lL~r~~e~~i 398 (726)
T PRK09841 343 ALLEKRQTLEQERKRLNKRVS-----------AMPSTQQEVLRLSRDVEAGRAVYLQLLNRQQELSI 398 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----------hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222333333333333333333 33444555566666666666677776665555443
No 128
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=87.68 E-value=14 Score=36.62 Aligned_cols=39 Identities=33% Similarity=0.498 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 222 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKEL 260 (435)
Q Consensus 222 Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~~e 260 (435)
++.+..+|..+....+.++..|.+++.+++.++..|.+.
T Consensus 59 aee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee 97 (246)
T PF00769_consen 59 AEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEE 97 (246)
T ss_dssp HHHHHHHHHH------------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444555555666666666655555443
No 129
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=87.55 E-value=11 Score=43.19 Aligned_cols=21 Identities=24% Similarity=0.161 Sum_probs=15.3
Q ss_pred ccccccccCcceE----EeecCcch
Q 013864 20 PRWVCQNCRHFLC----IVGVDSYA 40 (435)
Q Consensus 20 ~~~~cq~c~~~l~----i~~~d~~~ 40 (435)
+.+...+-+|||. +|..|..+
T Consensus 299 ~~i~l~~~rHPll~~~~~Vpndi~l 323 (782)
T PRK00409 299 GKIDLRQARHPLLDGEKVVPKDISL 323 (782)
T ss_pred CcEEEcCcCCceeccCceECceeEE
Confidence 3577889999997 56666555
No 130
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=87.54 E-value=18 Score=38.92 Aligned_cols=107 Identities=15% Similarity=0.127 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccc-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 180 KLDKEVDDVTRDIEAYEACLQRLEGEAR-DVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (435)
Q Consensus 180 ~Ld~qle~~~~E~d~Y~~fL~~L~~~~~-~~~~ee~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~ 258 (435)
+.|+++.+++.++.....--.++..+.. .....+.+.+.+.+.|.|.++|.+|..++-.++-..+++-+.+......++
T Consensus 10 ~~dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~a~~~~~t~~~~~~e 89 (459)
T KOG0288|consen 10 ENDQRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVREEATEKTLTVDVLIAE 89 (459)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777766654443333332210 001112333444455666666666666665555554444444444444445
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 013864 259 ELEERYWQEFNNFQFQLIAHQEERDAIS 286 (435)
Q Consensus 259 ~eE~~~w~e~n~~q~qL~~~~ee~~sl~ 286 (435)
.++-++..+...++.|-.+|.+.-..+.
T Consensus 90 n~~~r~~~eir~~~~q~~e~~n~~~~l~ 117 (459)
T KOG0288|consen 90 NLRIRSLNEIRELREQKAEFENAELALR 117 (459)
T ss_pred HHHHHHHHHHHHHHHhhhhhccchhhHH
Confidence 5555666666666666555555544444
No 131
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=87.19 E-value=8.8 Score=43.96 Aligned_cols=20 Identities=25% Similarity=0.305 Sum_probs=13.3
Q ss_pred cccccccCcceE----EeecCcch
Q 013864 21 RWVCQNCRHFLC----IVGVDSYA 40 (435)
Q Consensus 21 ~~~cq~c~~~l~----i~~~d~~~ 40 (435)
.+.+.+-+|||. +|..|..+
T Consensus 295 ~i~l~~~rhPll~~~~~vp~di~l 318 (771)
T TIGR01069 295 KIILENARHPLLKEPKVVPFTLNL 318 (771)
T ss_pred CEEEccccCceecCCceEeceeEe
Confidence 577788888876 44455444
No 132
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=87.12 E-value=31 Score=40.81 Aligned_cols=16 Identities=19% Similarity=0.331 Sum_probs=7.7
Q ss_pred ceeeccCCCCCCCCCC
Q 013864 72 SFVVLPKQRPQSHGVP 87 (435)
Q Consensus 72 s~vvl~~~~~~~~~~~ 87 (435)
-+-|||=.+-++..++
T Consensus 571 RvTiIPLnKI~s~~~s 586 (1174)
T KOG0933|consen 571 RVTIIPLNKIQSFVLS 586 (1174)
T ss_pred eeEEEechhhhhccCC
Confidence 3456665554334333
No 133
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=87.05 E-value=31 Score=35.70 Aligned_cols=85 Identities=22% Similarity=0.287 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 013864 213 ADFLKEKLKIEEEERKLEAAIEETE------------------KQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQ 274 (435)
Q Consensus 213 e~l~~e~~~Le~EE~~L~~eL~~lE------------------~e~~~l~~el~~le~e~~~L~~eE~~~w~e~n~~q~q 274 (435)
+.+.+.++.||+|-..|+.|...|. ++......++..|..++.+..++-.+.-.+...+..+
T Consensus 163 e~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~Llsq 242 (306)
T PF04849_consen 163 EALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQ 242 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555667777777777665554 3333444556666666555555555666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 013864 275 LIAHQEERDAISSKIEVSQAHLE 297 (435)
Q Consensus 275 L~~~~ee~~sl~~q~~~~~~qLd 297 (435)
+..++...+++-..-+-.+.+|.
T Consensus 243 ivdlQ~r~k~~~~EnEeL~q~L~ 265 (306)
T PF04849_consen 243 IVDLQQRCKQLAAENEELQQHLQ 265 (306)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHH
Confidence 66666666655544444444443
No 134
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=87.04 E-value=13 Score=39.96 Aligned_cols=12 Identities=25% Similarity=0.318 Sum_probs=5.4
Q ss_pred HHHHHHHHHhhc
Q 013864 291 VSQAHLELLKRT 302 (435)
Q Consensus 291 ~~~~qLdkLrkt 302 (435)
....+|+.+.++
T Consensus 116 ~La~~L~A~~r~ 127 (420)
T COG4942 116 RLAEQLAALQRS 127 (420)
T ss_pred HHHHHHHHHHhc
Confidence 333445555443
No 135
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=87.03 E-value=11 Score=35.55 Aligned_cols=34 Identities=21% Similarity=0.363 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 226 ERKLEAAIEETEKQNAEVNAELKELELKSKRFKE 259 (435)
Q Consensus 226 E~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~~ 259 (435)
...+..|.+.++.+.+++.++++.|+.|...|.+
T Consensus 99 ~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~ 132 (161)
T TIGR02894 99 DQALQKENERLKNQNESLQKRNEELEKELEKLRQ 132 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555444433
No 136
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=86.97 E-value=19 Score=33.12 Aligned_cols=70 Identities=19% Similarity=0.227 Sum_probs=44.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 170 CLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEA---RDVLSEADFLKEKLKIEEEERKLEAAIEETEKQ 239 (435)
Q Consensus 170 C~eC~d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~---~~~~~ee~l~~e~~~Le~EE~~L~~eL~~lE~e 239 (435)
+..|..-=+..|+.++.++..+........+.|+.+- ...++.+++...+..|++|...+...|+.|...
T Consensus 66 ~~~~s~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~ 138 (169)
T PF07106_consen 66 LEVPSPEELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRSG 138 (169)
T ss_pred cCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4445555566666666666666666666555554322 124567777777777777777777777777653
No 137
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=86.96 E-value=26 Score=38.90 Aligned_cols=23 Identities=17% Similarity=0.408 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 013864 180 KLDKEVDDVTRDIEAYEACLQRL 202 (435)
Q Consensus 180 ~Ld~qle~~~~E~d~Y~~fL~~L 202 (435)
.++.++..+..|.+.|..-+.+.
T Consensus 110 ~~e~ei~kl~~e~~elr~~~~~~ 132 (546)
T KOG0977|consen 110 KLEIEITKLREELKELRKKLEKA 132 (546)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHH
Confidence 34555555666666666544433
No 138
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=86.93 E-value=9.6 Score=43.66 Aligned_cols=9 Identities=22% Similarity=0.361 Sum_probs=5.2
Q ss_pred ccchHHHHH
Q 013864 395 TRYDKAMTL 403 (435)
Q Consensus 395 ~kFD~AMva 403 (435)
-++|.|+..
T Consensus 701 ~~~~eA~~~ 709 (771)
T TIGR01069 701 QRSEEALDR 709 (771)
T ss_pred CCHHHHHHH
Confidence 356777633
No 139
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=86.86 E-value=52 Score=37.65 Aligned_cols=26 Identities=15% Similarity=0.240 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 273 FQLIAHQEERDAISSKIEVSQAHLEL 298 (435)
Q Consensus 273 ~qL~~~~ee~~sl~~q~~~~~~qLdk 298 (435)
.+|..+.++.+.+.+.++.++.++++
T Consensus 639 ~EL~~~~~~l~~l~~si~~lk~k~~~ 664 (717)
T PF10168_consen 639 KELERMKDQLQDLKASIEQLKKKLDY 664 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444443
No 140
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=86.75 E-value=16 Score=29.95 Aligned_cols=43 Identities=23% Similarity=0.302 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 220 LKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEE 262 (435)
Q Consensus 220 ~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~~eE~ 262 (435)
.+||.--..+...|..|+.+.+++..+-..+..+...|.++.+
T Consensus 7 ~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~ 49 (72)
T PF06005_consen 7 EQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENE 49 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3444444455555555555555554444444444444444333
No 141
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=86.56 E-value=25 Score=34.51 Aligned_cols=16 Identities=6% Similarity=0.131 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHhhc
Q 013864 403 LFLSCLKDFAEFANSK 418 (435)
Q Consensus 403 aFLdCL~Q~~e~v~~~ 418 (435)
.+..-|.+..+-+.++
T Consensus 220 ~~~~~i~~ai~ia~kq 235 (251)
T PF11932_consen 220 SYRREIRKAIRIARKQ 235 (251)
T ss_pred HHHHHHHHHHHHHhCC
Confidence 5566666666666544
No 142
>PRK10698 phage shock protein PspA; Provisional
Probab=86.41 E-value=34 Score=33.38 Aligned_cols=50 Identities=14% Similarity=0.177 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 246 ELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAH 295 (435)
Q Consensus 246 el~~le~e~~~L~~eE~~~w~e~n~~q~qL~~~~ee~~sl~~q~~~~~~q 295 (435)
.+..++.+.......-.++-.....++..+.+...++..|.+++..+..+
T Consensus 100 ~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~ 149 (222)
T PRK10698 100 LIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSS 149 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444455556666666777777777777777665
No 143
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=86.40 E-value=31 Score=32.88 Aligned_cols=51 Identities=12% Similarity=0.241 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 246 ELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHL 296 (435)
Q Consensus 246 el~~le~e~~~L~~eE~~~w~e~n~~q~qL~~~~ee~~sl~~q~~~~~~qL 296 (435)
++..++.....+.....++-..+..++..+.+++.++..+.++...++.+.
T Consensus 99 ~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a~~ 149 (221)
T PF04012_consen 99 QAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAKAQK 149 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444445556666667777777777777766666553
No 144
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=86.23 E-value=5.8 Score=38.47 Aligned_cols=45 Identities=24% Similarity=0.234 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 215 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKE 259 (435)
Q Consensus 215 l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~~ 259 (435)
...++..|+..=.++....-++|..+.++++|+.+++.+...+++
T Consensus 173 ~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~~~~ 217 (221)
T PF05700_consen 173 AGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRKAAELKE 217 (221)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445666777777777777777788888887777777766555543
No 145
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=85.71 E-value=53 Score=34.93 Aligned_cols=24 Identities=13% Similarity=0.350 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 179 DKLDKEVDDVTRDIEAYEACLQRL 202 (435)
Q Consensus 179 e~Ld~qle~~~~E~d~Y~~fL~~L 202 (435)
+.++.++..+..+...+...++.+
T Consensus 100 ~~~~~~~~~~~~~~~rL~a~~~~~ 123 (457)
T TIGR01000 100 QLLEQQLDNLKDQKKSLDTLKQSI 123 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335555555555555555555544
No 146
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=85.43 E-value=63 Score=35.57 Aligned_cols=55 Identities=16% Similarity=0.230 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhHHHHHH
Q 013864 221 KIEEEERKLEAAIEETEKQNAEVNAELKELE---LKSKRFKELEERYWQEFNNFQFQL 275 (435)
Q Consensus 221 ~Le~EE~~L~~eL~~lE~e~~~l~~el~~le---~e~~~L~~eE~~~w~e~n~~q~qL 275 (435)
+|..|....++||+.|..+..+|..+++... .+.+...++-++..++.+...-+.
T Consensus 334 kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i~~~~ 391 (622)
T COG5185 334 KLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKINIQS 391 (622)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcchH
Confidence 3444555555566666666666555555442 223333344445566555554443
No 147
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=85.33 E-value=15 Score=30.11 Aligned_cols=28 Identities=25% Similarity=0.296 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 227 RKLEAAIEETEKQNAEVNAELKELELKS 254 (435)
Q Consensus 227 ~~L~~eL~~lE~e~~~l~~el~~le~e~ 254 (435)
..|..|-+.|.+........|+.|..+.
T Consensus 15 a~L~eEGekLSk~el~~~~~IKKLr~~~ 42 (74)
T PF12329_consen 15 AQLMEEGEKLSKKELKLNNTIKKLRAKI 42 (74)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3444444444444444444444444443
No 148
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=85.22 E-value=39 Score=40.61 Aligned_cols=7 Identities=29% Similarity=0.510 Sum_probs=3.8
Q ss_pred CCCcccc
Q 013864 17 PNVPRWV 23 (435)
Q Consensus 17 ~~~~~~~ 23 (435)
|.+|.+.
T Consensus 20 p~~p~~~ 26 (1293)
T KOG0996|consen 20 PDLPAPD 26 (1293)
T ss_pred CCCCccc
Confidence 6665544
No 149
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=85.22 E-value=19 Score=29.47 Aligned_cols=35 Identities=29% Similarity=0.360 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 224 EEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (435)
Q Consensus 224 ~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~ 258 (435)
.....|..++++|+.+...+..+...|+.+-.+|.
T Consensus 18 eti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~ 52 (72)
T PF06005_consen 18 ETIALLQMENEELKEKNNELKEENEELKEENEQLK 52 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444445544444444
No 150
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=85.13 E-value=53 Score=35.94 Aligned_cols=7 Identities=43% Similarity=0.264 Sum_probs=3.0
Q ss_pred hHHHHHH
Q 013864 336 DEINAAW 342 (435)
Q Consensus 336 ~EINAAw 342 (435)
.|++||=
T Consensus 421 ke~eaaK 427 (522)
T PF05701_consen 421 KEAEAAK 427 (522)
T ss_pred HHHHHHH
Confidence 3444443
No 151
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=85.07 E-value=39 Score=32.86 Aligned_cols=142 Identities=12% Similarity=0.137 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 013864 217 KEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAH- 295 (435)
Q Consensus 217 ~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~~eE~~~w~e~n~~q~qL~~~~ee~~sl~~q~~~~~~q- 295 (435)
..+..|+.+-.++.+++++..+..+++.+++......+....+..+.........+..+...+.....+..++...+.+
T Consensus 70 ~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~r~~l 149 (302)
T PF10186_consen 70 ERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLSASQDLVESRQEQLEELQNELEERKQRLSQLQSQLARRRRQL 149 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555556666666655555555555555444443333333333444444444444444444444445444433
Q ss_pred ------HHHH-------hhcccCCCceeeeecCCeeeeccccCCCCCCCCCChhHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 013864 296 ------LELL-------KRTNVLNDAFPIWHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMCQYFRPKFPY 362 (435)
Q Consensus 296 ------LdkL-------rktNV~Nd~F~I~hdG~fGTINGlRLGrlp~~~V~W~EINAAwGQ~~LLL~tla~kl~~kF~~ 362 (435)
+=-+ +..+.....|.|. ....+|+--.-..|.. .-..=+.-.+=-+.||-..+.-.|-+.+.+
T Consensus 150 ~~~l~~ifpI~~~~~~~~~~~~~~~~~~I~---~~~lp~~~~~~~~~~~-~isaALgyvahlv~lls~yL~v~Lpy~i~~ 225 (302)
T PF10186_consen 150 IQELSEIFPIEQVSSPRRPSDSSSSEYTIC---GLPLPNSRDFNSLPDE-EISAALGYVAHLVSLLSRYLGVPLPYPITP 225 (302)
T ss_pred HHHHHHHhCceeecccccCCCCCCCCeeec---CcccCCCcccccCCHH-HHHHHHHHHHHHHHHHHHHhCCCCCCCccc
Confidence 2222 2223346778887 3344666555556553 333445544544444444555556666643
No 152
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=84.91 E-value=38 Score=32.54 Aligned_cols=108 Identities=27% Similarity=0.331 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 185 VDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLK-------IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 257 (435)
Q Consensus 185 le~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~~-------Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L 257 (435)
+++-...-..|...|..|+...-++..--.-..++.. +..+.+.+++++.+-+.+..+++.++.+++.++.+|
T Consensus 64 idd~~~~f~~~~~tl~~LE~~GFnV~~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el 143 (190)
T PF05266_consen 64 IDDSRSSFESLMKTLSELEEHGFNVKFLRSRLNKLLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILEL 143 (190)
T ss_pred cCCcHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 3333444455666666666543322111111122222 333444455555555555555666666666666666
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 258 KELEERYWQEFNNFQFQLIAHQEERDAISSKIEVS 292 (435)
Q Consensus 258 ~~eE~~~w~e~n~~q~qL~~~~ee~~sl~~q~~~~ 292 (435)
++.....=........++.+++.....++..+..+
T Consensus 144 ~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~ 178 (190)
T PF05266_consen 144 QRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENA 178 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55554444444444444444444444444444443
No 153
>PRK11519 tyrosine kinase; Provisional
Probab=84.90 E-value=76 Score=36.00 Aligned_cols=31 Identities=13% Similarity=0.135 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013864 174 MRVLSDKLDKEVDDVTRDIEAYEACLQRLEG 204 (435)
Q Consensus 174 ~d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~ 204 (435)
+...++.|++|+..+.++.+.-+.-|+..+.
T Consensus 265 a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~ 295 (719)
T PRK11519 265 ASKSLAFLAQQLPEVRSRLDVAENKLNAFRQ 295 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677777777777776666666655554
No 154
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=84.85 E-value=20 Score=38.22 Aligned_cols=29 Identities=14% Similarity=0.281 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013864 176 VLSDKLDKEVDDVTRDIEAYEACLQRLEG 204 (435)
Q Consensus 176 ~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~ 204 (435)
..+..+..++.+..+....+..-+++|+.
T Consensus 212 ~~l~~~~~el~eik~~~~~L~~~~e~Lk~ 240 (395)
T PF10267_consen 212 LGLQKILEELREIKESQSRLEESIEKLKE 240 (395)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888888888888888874
No 155
>PRK08032 fliD flagellar capping protein; Reviewed
Probab=84.77 E-value=3.8 Score=43.95 Aligned_cols=51 Identities=8% Similarity=0.158 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 013864 235 ETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSK 288 (435)
Q Consensus 235 ~lE~e~~~l~~el~~le~e~~~L~~eE~~~w~e~n~~q~qL~~~~ee~~sl~~q 288 (435)
.+.++...++.+++.++. +++..|++||++|..++.-+..++.....|..|
T Consensus 410 ~l~~~i~~l~~~i~~~~~---rl~~~e~rl~~qF~ame~~~s~mns~~s~L~~q 460 (462)
T PRK08032 410 GVNKTLKKLTKQYNAVSD---SIDATIARYKAQFTQLDKLMTSLNSTSSYLTQQ 460 (462)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445555555555543 467788899999999988776666555555444
No 156
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=84.71 E-value=3.7 Score=36.33 Aligned_cols=15 Identities=20% Similarity=0.556 Sum_probs=12.4
Q ss_pred cCCCceeeeecCCeee
Q 013864 304 VLNDAFPIWHDGEFGT 319 (435)
Q Consensus 304 V~Nd~F~I~hdG~fGT 319 (435)
+|++=|||.+ -+||.
T Consensus 78 LY~EGFHICn-~~yG~ 92 (110)
T PRK13169 78 LYQEGFHICN-LHYGS 92 (110)
T ss_pred HHHcCceecH-HHhCC
Confidence 6999999988 57765
No 157
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=84.63 E-value=20 Score=41.22 Aligned_cols=20 Identities=30% Similarity=0.315 Sum_probs=12.9
Q ss_pred CCcccchHHHHHHHHHhhcC
Q 013864 142 NSGFHSTITVLKRAFEIATS 161 (435)
Q Consensus 142 ~~~ls~~i~~l~~lFdILSs 161 (435)
-++||..+..+..|...++.
T Consensus 388 lStfS~~m~~~~~Il~~~~~ 407 (782)
T PRK00409 388 LSTFSGHMTNIVRILEKADK 407 (782)
T ss_pred hhHHHHHHHHHHHHHHhCCc
Confidence 45677777777776665543
No 158
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=84.62 E-value=50 Score=37.03 Aligned_cols=95 Identities=17% Similarity=0.159 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCceeeeecCCeeeec
Q 013864 242 EVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTIN 321 (435)
Q Consensus 242 ~l~~el~~le~e~~~L~~eE~~~w~e~n~~q~qL~~~~ee~~sl~~q~~~~~~qLdkLrktNV~Nd~F~I~hdG~fGTIN 321 (435)
.+.++++.|+......+.+=.+-|.+.-.++.+..+...+...-+..+.....+++++.+. .|-.-++. .-+=+|.
T Consensus 423 pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~--~~Rs~Yt~--RIlEIv~ 498 (594)
T PF05667_consen 423 PLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKD--VNRSAYTR--RILEIVK 498 (594)
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC--CCHHHHHH--HHHHHHH
Confidence 3444444444433333333446778888888888888888888888888888899999887 34333221 1244466
Q ss_pred cccCCCCCCCCCChhHHHHHHHHHHHH
Q 013864 322 NFRLGRLPKIPVEWDEINAAWGQACLL 348 (435)
Q Consensus 322 GlRLGrlp~~~V~W~EINAAwGQ~~LL 348 (435)
++|==+ .||+-=|.-|--|
T Consensus 499 NI~KQk--------~eI~KIl~DTr~l 517 (594)
T PF05667_consen 499 NIRKQK--------EEIEKILSDTREL 517 (594)
T ss_pred hHHHHH--------HHHHHHHHHHHHH
Confidence 666543 4555555555444
No 159
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=84.53 E-value=37 Score=36.95 Aligned_cols=16 Identities=25% Similarity=0.160 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 013864 281 ERDAISSKIEVSQAHL 296 (435)
Q Consensus 281 e~~sl~~q~~~~~~qL 296 (435)
.+.+...++.-.+.||
T Consensus 429 ~~~s~d~~I~dLqEQl 444 (493)
T KOG0804|consen 429 ALGSKDEKITDLQEQL 444 (493)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444454444444
No 160
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=84.45 E-value=38 Score=38.39 Aligned_cols=25 Identities=20% Similarity=0.202 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 225 EERKLEAAIEETEKQNAEVNAELKE 249 (435)
Q Consensus 225 EE~~L~~eL~~lE~e~~~l~~el~~ 249 (435)
|-..+..++.+++.+..+++.++.+
T Consensus 305 ea~~~l~~~~~l~~ql~~l~~~~~~ 329 (726)
T PRK09841 305 EAKAVLEQIVNVDNQLNELTFREAE 329 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445566666666555544433
No 161
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=84.39 E-value=31 Score=31.12 Aligned_cols=31 Identities=19% Similarity=0.112 Sum_probs=12.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 266 QEFNNFQFQLIAHQEERDAISSKIEVSQAHL 296 (435)
Q Consensus 266 ~e~n~~q~qL~~~~ee~~sl~~q~~~~~~qL 296 (435)
+..+.++..-..+.-|..--+.+|+..+.+|
T Consensus 119 klk~~~~~~~tq~~~e~rkke~E~~kLk~rL 149 (151)
T PF11559_consen 119 KLKNQLQQRKTQYEHELRKKEREIEKLKERL 149 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333333334444444444444444444
No 162
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=84.34 E-value=50 Score=34.50 Aligned_cols=19 Identities=5% Similarity=0.275 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 013864 177 LSDKLDKEVDDVTRDIEAY 195 (435)
Q Consensus 177 Lle~Ld~qle~~~~E~d~Y 195 (435)
.+..|..++.+++.++...
T Consensus 255 ~i~~l~~~l~~le~~l~~l 273 (444)
T TIGR03017 255 IIQNLKTDIARAESKLAEL 273 (444)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555444
No 163
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=84.14 E-value=34 Score=39.49 Aligned_cols=77 Identities=21% Similarity=0.363 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013864 222 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 301 (435)
Q Consensus 222 Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~~eE~~~w~e~n~~q~qL~~~~ee~~sl~~q~~~~~~qLdkLrk 301 (435)
+++|-.++...+++-+++..+..+ ..+.|..+++.+=++-...+-.+++.|.+.+.|...|..-+.+--+++.||+.
T Consensus 467 q~~Enk~~~~~~~ekd~~l~~~kq---~~d~e~~rik~ev~eal~~~k~~q~kLe~sekEN~iL~itlrQrDaEi~RL~e 543 (861)
T PF15254_consen 467 QKEENKRLRKMFQEKDQELLENKQ---QFDIETTRIKIEVEEALVNVKSLQFKLEASEKENQILGITLRQRDAEIERLRE 543 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHH---HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhHHHHHHHHHHHHHH
Confidence 344444455544444444333222 22344455555555567778888888888888888887777777777777664
No 164
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=83.99 E-value=19 Score=38.88 Aligned_cols=35 Identities=11% Similarity=0.098 Sum_probs=20.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013864 267 EFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 301 (435)
Q Consensus 267 e~n~~q~qL~~~~ee~~sl~~q~~~~~~qLdkLrk 301 (435)
+...+..++.++..++..++.++..++++|..|..
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~ 173 (525)
T TIGR02231 139 EIERLLTEDREAERRIRELEKQLSELQNELNALLT 173 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 33444444555555556666666666777777754
No 165
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=83.95 E-value=12 Score=40.65 Aligned_cols=73 Identities=22% Similarity=0.231 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 227 RKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERY-WQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELL 299 (435)
Q Consensus 227 ~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~~eE~~~-w~e~n~~q~qL~~~~ee~~sl~~q~~~~~~qLdkL 299 (435)
+.|..++++++++.+.+.++=+.|.+|-++|.+.|... -+--+.++-...+++++++.+..+...++..|+.|
T Consensus 62 rTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l 135 (472)
T TIGR03752 62 RTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQL 135 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555544444444444444333211 11112222223333444444444444444444444
No 166
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=83.93 E-value=14 Score=39.98 Aligned_cols=24 Identities=17% Similarity=0.090 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 276 IAHQEERDAISSKIEVSQAHLELL 299 (435)
Q Consensus 276 ~~~~ee~~sl~~q~~~~~~qLdkL 299 (435)
.++..++..++.+++....+|++|
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~l~~l 164 (525)
T TIGR02231 141 ERLLTEDREAERRIRELEKQLSEL 164 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444
No 167
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=83.92 E-value=41 Score=34.46 Aligned_cols=33 Identities=30% Similarity=0.311 Sum_probs=24.6
Q ss_pred CcccchHHHHHHHHHhhcCCcccCCcchHHHHH
Q 013864 143 SGFHSTITVLKRAFEIATSQTQVEQPLCLECMR 175 (435)
Q Consensus 143 ~~ls~~i~~l~~lFdILSs~s~IDhPLC~eC~d 175 (435)
+-+++.|.-+...=++.|.-++--..+|.=-..
T Consensus 53 ~~i~~k~~e~r~~r~lat~l~~~g~~i~e~ls~ 85 (338)
T KOG3647|consen 53 SLIGDKIEELRKARELATDLTQRGTTICEMLSK 85 (338)
T ss_pred HHHHHHHHHHHHHHHHHhhccccchHHHHHHHH
Confidence 458888888888888888888777777764433
No 168
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=83.91 E-value=12 Score=42.98 Aligned_cols=11 Identities=9% Similarity=0.452 Sum_probs=6.7
Q ss_pred cee-EEecCCcc
Q 013864 363 RIK-IIPMGSYP 373 (435)
Q Consensus 363 ~Yk-LvPmGS~S 373 (435)
.|| |.|+-+.|
T Consensus 695 kyrAly~FeaRs 706 (1118)
T KOG1029|consen 695 KYRALYPFEARS 706 (1118)
T ss_pred EEeeecccccCC
Confidence 455 67776544
No 169
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=83.71 E-value=30 Score=41.63 Aligned_cols=20 Identities=15% Similarity=0.056 Sum_probs=8.6
Q ss_pred chHHHHHHHHHHHHHHHHHh
Q 013864 397 YDKAMTLFLSCLKDFAEFAN 416 (435)
Q Consensus 397 FD~AMvaFLdCL~Q~~e~v~ 416 (435)
=|..+..-|..-.++..+..
T Consensus 751 ~~~~~~~vl~Lq~~LEqe~~ 770 (1317)
T KOG0612|consen 751 KDQLITEVLKLQSMLEQEIS 770 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444433
No 170
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=83.68 E-value=45 Score=32.42 Aligned_cols=44 Identities=27% Similarity=0.376 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 214 DFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 257 (435)
Q Consensus 214 ~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L 257 (435)
++......|+++-+.|.++-..+|+|...+.+++..|+.+-..+
T Consensus 71 dLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl 114 (193)
T PF14662_consen 71 DLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKL 114 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 33334444566666666666666666666666666665544444
No 171
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=83.50 E-value=66 Score=34.24 Aligned_cols=62 Identities=19% Similarity=0.177 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 013864 241 AEVNAELKELELKSKRFKELEERYW---QEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRT 302 (435)
Q Consensus 241 ~~l~~el~~le~e~~~L~~eE~~~w---~e~n~~q~qL~~~~ee~~sl~~q~~~~~~qLdkLrkt 302 (435)
.+++.++..++.+...++++.+++= ..+...+.++..++.+.+.....|+....+++..+-.
T Consensus 320 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~el~~L~Re~~~~~~~Y~~l~~r~eea~~~ 384 (498)
T TIGR03007 320 AEAEAEIASLEARVAELTARIERLESLLRTIPEVEAELTQLNRDYEVNKSNYEQLLTRRESAEVS 384 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444444444444433322222 3345566677777788888888888888877776643
No 172
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=83.38 E-value=50 Score=32.74 Aligned_cols=76 Identities=18% Similarity=0.245 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 222 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLE 297 (435)
Q Consensus 222 Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~~eE~~~w~e~n~~q~qL~~~~ee~~sl~~q~~~~~~qLd 297 (435)
++.+-..|..+..+++.+...|..+....+.+...|...=..+-.....+.-.......+...+..++..++..+.
T Consensus 45 aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~ 120 (246)
T PF00769_consen 45 AEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEESERKEEEAEELQEELEEAREDEE 120 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444443333333333343333333344444444444444455555555555555433
No 173
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=83.33 E-value=22 Score=40.07 Aligned_cols=14 Identities=14% Similarity=0.247 Sum_probs=10.7
Q ss_pred eEEecCCcceeecc
Q 013864 365 KIIPMGSYPRIMDS 378 (435)
Q Consensus 365 kLvPmGS~SkI~~~ 378 (435)
..+|.||+|.+-..
T Consensus 329 e~~p~s~~S~~n~~ 342 (861)
T KOG1899|consen 329 ESFPVSSSSTTNNG 342 (861)
T ss_pred cccccccccccccc
Confidence 36889999888754
No 174
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=83.20 E-value=50 Score=35.69 Aligned_cols=111 Identities=18% Similarity=0.200 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 218 EKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEE-RYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHL 296 (435)
Q Consensus 218 e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~~eE~-~~w~e~n~~q~qL~~~~ee~~sl~~q~~~~~~qL 296 (435)
+.+++|++-.+|.+.|.++-.....+.. +..+....+. .+.+..|.+.+....+++.+.+|..++.+.=..|
T Consensus 174 e~kqlEe~ieeL~qsl~kd~~~~~~l~~-------e~n~~k~s~~s~~~k~l~al~llv~tLee~~~~LktqIV~sPeKL 246 (446)
T KOG4438|consen 174 EVKQLEENIEELNQSLLKDFNQQMSLLA-------EYNKMKKSSTSEKNKILNALKLLVVTLEENANCLKTQIVQSPEKL 246 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 3344444444444444444444433333 3333333333 3778888899988888888888887776553332
Q ss_pred -HHHhhcccCCCceeeeecCCeeeeccccCCCCCCCCCChhHHHHHHHHHHHHHHHHHh
Q 013864 297 -ELLKRTNVLNDAFPIWHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMCQ 354 (435)
Q Consensus 297 -dkLrktNV~Nd~F~I~hdG~fGTINGlRLGrlp~~~V~W~EINAAwGQ~~LLL~tla~ 354 (435)
+.|..++ ++||..-+..|+..|=-+.+|-.+=-+.|+-.
T Consensus 247 ~~~leemk-------------------~~l~k~k~~~~~l~~K~~iL~ekv~~~qti~~ 286 (446)
T KOG4438|consen 247 KEALEEMK-------------------DLLQKEKSAMVELQEKAKILEEKVTNLQTIEK 286 (446)
T ss_pred HHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Confidence 1222222 23344445566666666667766666666544
No 175
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=83.13 E-value=26 Score=36.21 Aligned_cols=14 Identities=29% Similarity=0.695 Sum_probs=8.2
Q ss_pred cCCcchHHHHHHHH
Q 013864 165 VEQPLCLECMRVLS 178 (435)
Q Consensus 165 IDhPLC~eC~d~Ll 178 (435)
=.|-+|..|.+.+.
T Consensus 26 CGH~~C~sCv~~l~ 39 (309)
T TIGR00570 26 CGHTLCESCVDLLF 39 (309)
T ss_pred CCCcccHHHHHHHh
Confidence 45666666666653
No 176
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=83.08 E-value=47 Score=40.57 Aligned_cols=23 Identities=13% Similarity=0.294 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHH-------HHHHHHHHH
Q 013864 178 SDKLDKEVDDVTRD-------IEAYEACLQ 200 (435)
Q Consensus 178 le~Ld~qle~~~~E-------~d~Y~~fL~ 200 (435)
++.+..+++.++++ +..|..|.+
T Consensus 232 ~~~~~~~le~l~~~~~~l~~i~~~y~~y~~ 261 (1353)
T TIGR02680 232 LDEYRDELERLEALERALRNFLQRYRRYAR 261 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555554444 444555554
No 177
>PRK06798 fliD flagellar capping protein; Validated
Probab=82.85 E-value=5 Score=42.97 Aligned_cols=54 Identities=7% Similarity=0.241 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 013864 232 AIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSK 288 (435)
Q Consensus 232 eL~~lE~e~~~l~~el~~le~e~~~L~~eE~~~w~e~n~~q~qL~~~~ee~~sl~~q 288 (435)
+++.++.+...++.+++.++. +++..|++||++|+.+...+..++.+...+.++
T Consensus 380 r~~~l~~~i~~l~~~~~~~e~---rl~~~e~~l~~qf~ale~~ms~lnsQ~s~l~~~ 433 (440)
T PRK06798 380 RSKSIDNRVSKLDLKITDIDT---QNKQKQDNIVDKYQKLESTLAALDSQLKTIKAM 433 (440)
T ss_pred hhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555554 366788899999999988877766555444443
No 178
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=82.73 E-value=19 Score=36.49 Aligned_cols=154 Identities=23% Similarity=0.329 Sum_probs=84.4
Q ss_pred CcccchHHHHHHHH----HhhcC---CcccCCcchHHHHHHHHHHHHHH-HHHH-HHHHHHHHHHHHHHhcccccC--CC
Q 013864 143 SGFHSTITVLKRAF----EIATS---QTQVEQPLCLECMRVLSDKLDKE-VDDV-TRDIEAYEACLQRLEGEARDV--LS 211 (435)
Q Consensus 143 ~~ls~~i~~l~~lF----dILSs---~s~IDhPLC~eC~d~Lle~Ld~q-le~~-~~E~d~Y~~fL~~L~~~~~~~--~~ 211 (435)
....+.+..+..|| ||.++ ++..=.-.+.+|-=.+++.|+.. +.++ ..+...-.+.|..|+.-.-++ +.
T Consensus 93 ~Vk~S~~silq~If~KHGDIAsNc~lkS~~~RS~yLe~Lc~IIqeLq~t~~~~LS~~dl~e~~~~l~DLesa~vkV~WLR 172 (269)
T PF05278_consen 93 QVKPSQVSILQKIFEKHGDIASNCKLKSQQFRSYYLECLCDIIQELQSTPLKELSESDLKEMIATLKDLESAKVKVDWLR 172 (269)
T ss_pred EEcHhHHHHHHHHHHhCccHhhccccCcHHHHHHHHHHHHHHHHHHhcCcHhhhhHHHHHHHHHHHHHHHHcCcchHHHH
Confidence 44566778888999 78865 56666667889999999999763 3333 334444445555555322110 00
Q ss_pred --HHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 013864 212 --EADFLK------EKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERD 283 (435)
Q Consensus 212 --ee~l~~------e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~~eE~~~w~e~n~~q~qL~~~~ee~~ 283 (435)
-+++.+ .....+.+.+.....|+..+.|.+....++.+.+++..++.+.. .+..-.|.+++.++-
T Consensus 173 ~~L~Ei~Ea~e~~~~~~~~e~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i-------~e~~~rl~~l~~~~~ 245 (269)
T PF05278_consen 173 SKLEEILEAKEIYDQHETREEEKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERI-------TEMKGRLGELEMEST 245 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 011111 11122333333444444444444444444444444444443322 334455777777777
Q ss_pred HHHHHHHHHHHHHHHHhhcc
Q 013864 284 AISSKIEVSQAHLELLKRTN 303 (435)
Q Consensus 284 sl~~q~~~~~~qLdkLrktN 303 (435)
.+.-.+.+++...++..--.
T Consensus 246 ~l~k~~~~~~sKV~kf~~~s 265 (269)
T PF05278_consen 246 RLSKTIKSIKSKVEKFHGKS 265 (269)
T ss_pred HHHHHHHHHHHHHHHhcCCc
Confidence 77777888888887765433
No 179
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=82.68 E-value=61 Score=40.77 Aligned_cols=119 Identities=14% Similarity=0.134 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 178 SDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLS-EADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKR 256 (435)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~-ee~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~ 256 (435)
++..+.+++.+..+.+.|..-|+.+.....+... -.....+....+.++.+|.++...|+.+..-|..+|...-.++..
T Consensus 131 le~~~~ele~l~~~n~~l~~ql~ss~~~~~e~e~r~~e~~s~~vs~q~k~~rl~QEksll~s~~~wL~~eL~~~~ekll~ 210 (1822)
T KOG4674|consen 131 LERQKAELEALESENKDLNDQLKSSTKTLSELEARLQETQSEDVSSQLKEERLEQEKSLLESENKWLSRELSKVNEKLLS 210 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 4555566677777777777777665432110000 000111111235555555555555555555555554444433322
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 257 FKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELL 299 (435)
Q Consensus 257 L~~eE~~~w~e~n~~q~qL~~~~ee~~sl~~q~~~~~~qLdkL 299 (435)
+ +++.=.++..++-+|.....+...+..++.....+...|
T Consensus 211 ~---~re~s~~~~~L~~~L~~~~~~~~~~q~~~~~l~q~~~eL 250 (1822)
T KOG4674|consen 211 L---RREHSIEVEQLEEKLSDLKESLAELQEKNKSLKQQNEEL 250 (1822)
T ss_pred H---HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 222222233344444444444444444444444333333
No 180
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=82.57 E-value=25 Score=31.66 Aligned_cols=25 Identities=24% Similarity=0.408 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 013864 179 DKLDKEVDDVTRDIEAYEACLQRLE 203 (435)
Q Consensus 179 e~Ld~qle~~~~E~d~Y~~fL~~L~ 203 (435)
+.|+.++..+.-+++.+..-|+.++
T Consensus 16 QqLq~ql~~~~~qk~~le~qL~E~~ 40 (119)
T COG1382 16 QQLQQQLQKVILQKQQLEAQLKEIE 40 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666665543
No 181
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=82.30 E-value=51 Score=37.47 Aligned_cols=62 Identities=24% Similarity=0.250 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 013864 222 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERD 283 (435)
Q Consensus 222 Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~~eE~~~w~e~n~~q~qL~~~~ee~~ 283 (435)
++..+....++|..|..+...+.+++..+..+...+.++-++.|+..+..+.+|........
T Consensus 232 l~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~ 293 (670)
T KOG0239|consen 232 LEGLESTIKKKIQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLV 293 (670)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555556677777777777777777777777777777888888887666655544433
No 182
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=82.02 E-value=85 Score=34.42 Aligned_cols=30 Identities=10% Similarity=0.314 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 222 IEEEERKLEAAIEETEKQNAEVNAELKELE 251 (435)
Q Consensus 222 Le~EE~~L~~eL~~lE~e~~~l~~el~~le 251 (435)
++.+.+...+++..+++-.+++..+.+.|-
T Consensus 90 le~~~~~~~ek~~~l~~~~~~L~~~F~~LA 119 (475)
T PRK10361 90 MEAAQQHADDKIRQMINSEQRLSEQFENLA 119 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555555555555555443
No 183
>PRK11519 tyrosine kinase; Provisional
Probab=81.97 E-value=35 Score=38.63 Aligned_cols=33 Identities=9% Similarity=0.008 Sum_probs=20.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013864 268 FNNFQFQLIAHQEERDAISSKIEVSQAHLELLK 300 (435)
Q Consensus 268 ~n~~q~qL~~~~ee~~sl~~q~~~~~~qLdkLr 300 (435)
.+..+.++.+++.+.+.....|+...+.++.++
T Consensus 365 lp~~e~~~~~L~Re~~~~~~lY~~lL~r~~e~~ 397 (719)
T PRK11519 365 MPKTQQEIVRLTRDVESGQQVYMQLLNKQQELK 397 (719)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444455556666666666667777766666554
No 184
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=81.77 E-value=1.2e+02 Score=36.00 Aligned_cols=71 Identities=13% Similarity=0.234 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 222 IEEEERKLEAAIEETEKQNAEVNAELKELEL--KSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQA 294 (435)
Q Consensus 222 Le~EE~~L~~eL~~lE~e~~~l~~el~~le~--e~~~L~~eE~~~w~e~n~~q~qL~~~~ee~~sl~~q~~~~~~ 294 (435)
|+.|..+.++|.+++..-.++...++.+... |...|+.+=.+ .---.+|.++..+++..++++.-++..+.
T Consensus 281 Lqrel~raR~e~keaqe~ke~~k~emad~ad~iEmaTldKEmAE--ERaesLQ~eve~lkEr~deletdlEILKa 353 (1243)
T KOG0971|consen 281 LQRELKRARKEAKEAQEAKERYKEEMADTADAIEMATLDKEMAE--ERAESLQQEVEALKERVDELETDLEILKA 353 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444432 22223221100 01234556666666666666555554443
No 185
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=81.73 E-value=53 Score=34.98 Aligned_cols=69 Identities=20% Similarity=0.307 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCC-C-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 176 VLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVL-S-EADFLKEKLKIEEEERKLEAAIEETEKQNAEVN 244 (435)
Q Consensus 176 ~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~-~-ee~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~ 244 (435)
...+.|++|+..++.+.+.-+.-|.....+..... + ...+..++..++.+...++.++.+++.....+.
T Consensus 161 ~~~~fl~~ql~~~~~~L~~ae~~l~~f~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~ 231 (498)
T TIGR03007 161 SAQRFIDEQIKTYEKKLEAAENRLKAFKQENGGILPDQEGDYYSEISEAQEELEAARLELNEAIAQRDALK 231 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777766666655555442221111 1 112233444444444444444444444444333
No 186
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=81.59 E-value=54 Score=31.88 Aligned_cols=43 Identities=30% Similarity=0.446 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 215 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 257 (435)
Q Consensus 215 l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L 257 (435)
+.++...+|.|-..|.+++..|..+...+..+...++.....|
T Consensus 86 L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL 128 (193)
T PF14662_consen 86 LLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKEL 128 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHH
Confidence 3444444556666666666666666665555555555555544
No 187
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=81.44 E-value=53 Score=31.65 Aligned_cols=75 Identities=23% Similarity=0.361 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHH---HHHHHHhHHHHHHHHHHHHHHHHHH
Q 013864 218 EKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK-------ELEE---RYWQEFNNFQFQLIAHQEERDAISS 287 (435)
Q Consensus 218 e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~-------~eE~---~~w~e~n~~q~qL~~~~ee~~sl~~ 287 (435)
.+..+..|-.+|.+-|..++.+.+++..++...+.....|. ..++ ..=.++..+.......+.||+.+..
T Consensus 49 ~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~ 128 (201)
T PF13851_consen 49 LMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYR 128 (201)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555554444433222221 1121 1112333444445555566666655
Q ss_pred HHHHH
Q 013864 288 KIEVS 292 (435)
Q Consensus 288 q~~~~ 292 (435)
++..+
T Consensus 129 kf~~~ 133 (201)
T PF13851_consen 129 KFESA 133 (201)
T ss_pred HHHHH
Confidence 55444
No 188
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=81.34 E-value=53 Score=31.62 Aligned_cols=31 Identities=16% Similarity=0.333 Sum_probs=12.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 269 NNFQFQLIAHQEERDAISSKIEVSQAHLELL 299 (435)
Q Consensus 269 n~~q~qL~~~~ee~~sl~~q~~~~~~qLdkL 299 (435)
+.|.+++..-......+...+.++...++.|
T Consensus 153 k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L 183 (194)
T PF15619_consen 153 KSFRRQLASEKKKHKEAQEEVKSLQEEIQRL 183 (194)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333443333333333333444444444444
No 189
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=81.32 E-value=48 Score=36.65 Aligned_cols=71 Identities=14% Similarity=0.164 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 013864 215 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAI 285 (435)
Q Consensus 215 l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~~eE~~~w~e~n~~q~qL~~~~ee~~sl 285 (435)
..+|..+|..+...+.++++.+--|.+++.+-|.+....-..+..++++.-..|....-.+.+.++|++.+
T Consensus 231 q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeELk~l 301 (596)
T KOG4360|consen 231 QQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEEELKCL 301 (596)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34566777777777777777777777776665555433333333333333333444444555667776665
No 190
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=81.27 E-value=22 Score=30.13 Aligned_cols=39 Identities=23% Similarity=0.440 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 215 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELK 253 (435)
Q Consensus 215 l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e 253 (435)
...++..+-++-+.+..+++.+..++.++.+++..+...
T Consensus 27 ~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~ 65 (108)
T PF02403_consen 27 DVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKA 65 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhC
Confidence 455667788888888899999988888888888877653
No 191
>PF11414 Suppressor_APC: Adenomatous polyposis coli tumour suppressor protein; PDB: 1M5I_A.
Probab=81.27 E-value=24 Score=29.89 Aligned_cols=54 Identities=15% Similarity=0.272 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHh
Q 013864 216 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEE--RYWQEFN 269 (435)
Q Consensus 216 ~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~~eE~--~~w~e~n 269 (435)
.+-++.||+|..-|.+.|+.+|++++=..++|..++.+...|-.... .||.+..
T Consensus 6 lk~mkeLEqEkd~LLqgLe~~Er~r~Wy~~qL~~vq~rq~~Lg~~~~~~~~~~d~~ 61 (84)
T PF11414_consen 6 LKRMKELEQEKDVLLQGLEMEERERDWYQQQLQSVQERQRHLGRNGTQFDFQMDLH 61 (84)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---------HHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccCcccccc
Confidence 46677899999999999999999999999999999998888876665 5665543
No 192
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=81.20 E-value=68 Score=38.64 Aligned_cols=11 Identities=36% Similarity=0.492 Sum_probs=5.0
Q ss_pred cCcchhhcccc
Q 013864 36 VDSYADKYLND 46 (435)
Q Consensus 36 ~d~~~~~~~~~ 46 (435)
-+||.+-|++.
T Consensus 55 rksF~~yYLP~ 65 (1201)
T PF12128_consen 55 RKSFDDYYLPY 65 (1201)
T ss_pred hhhHHHHcCCC
Confidence 34444444444
No 193
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=81.15 E-value=73 Score=38.36 Aligned_cols=15 Identities=13% Similarity=-0.097 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHH
Q 013864 339 NAAWGQACLLLHTMC 353 (435)
Q Consensus 339 NAAwGQ~~LLL~tla 353 (435)
...+.++--.|..+.
T Consensus 777 ~~~i~~L~~~l~~ie 791 (1201)
T PF12128_consen 777 KQEIEQLEKELKRIE 791 (1201)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444333
No 194
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=80.89 E-value=28 Score=29.70 Aligned_cols=37 Identities=27% Similarity=0.442 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 220 LKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKR 256 (435)
Q Consensus 220 ~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~ 256 (435)
..|+.....+..+++.++++...+..++.+++.++.+
T Consensus 66 ~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~ 102 (105)
T cd00632 66 TELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQ 102 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355555555556666666666666655555555443
No 195
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=80.77 E-value=28 Score=30.07 Aligned_cols=36 Identities=25% Similarity=0.442 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 220 LKIEEEERKLEAAIEETEKQNAEVNAELKELELKSK 255 (435)
Q Consensus 220 ~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~ 255 (435)
..|+...+.+...++.++++...+..++.+++.++.
T Consensus 70 ~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~ 105 (110)
T TIGR02338 70 QELKEKKETLELRVKTLQRQEERLREQLKELQEKIQ 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555566666655555555555555433
No 196
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=80.68 E-value=15 Score=39.18 Aligned_cols=87 Identities=16% Similarity=0.306 Sum_probs=44.3
Q ss_pred CcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 162 QTQVEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNA 241 (435)
Q Consensus 162 ~s~IDhPLC~eC~d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~lE~e~~ 241 (435)
.|.+.--+...-....++.|+.+++.+..+.......+.++++.........+..+.+.++.+...++.+++++++.+..
T Consensus 320 ~T~i~vg~~~~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~ 399 (451)
T PF03961_consen 320 KTEIEVGVDRPELKEKLEELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELK 399 (451)
T ss_pred cEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444433324445556777777777777777777777666542211111223333444455555555555555555444
Q ss_pred HHHHHHH
Q 013864 242 EVNAELK 248 (435)
Q Consensus 242 ~l~~el~ 248 (435)
++.++++
T Consensus 400 ~l~~~l~ 406 (451)
T PF03961_consen 400 ELKEELE 406 (451)
T ss_pred HHHHHHH
Confidence 4444333
No 197
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=80.68 E-value=59 Score=37.33 Aligned_cols=21 Identities=19% Similarity=0.479 Sum_probs=12.7
Q ss_pred CCCChhH----HHHHHH--HHHHHHHH
Q 013864 331 IPVEWDE----INAAWG--QACLLLHT 351 (435)
Q Consensus 331 ~~V~W~E----INAAwG--Q~~LLL~t 351 (435)
..-.|+- .|--+| |+.|=...
T Consensus 656 ~~tawereE~~l~~rL~dSQtllr~~v 682 (961)
T KOG4673|consen 656 AATAWEREERSLNERLSDSQTLLRINV 682 (961)
T ss_pred hhhHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 4556765 677778 66554443
No 198
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=80.50 E-value=39 Score=34.32 Aligned_cols=33 Identities=24% Similarity=0.359 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 219 KLKIEEEERKLEAAIEETEKQNAEVNAELKELE 251 (435)
Q Consensus 219 ~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le 251 (435)
+..+..+|..|...|+.-..|.+...+.|..|+
T Consensus 185 l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq 217 (267)
T PF10234_consen 185 LNNLASDEANLEAKIEKKKQELERNQKRLQSLQ 217 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555555555444444444444444443
No 199
>PRK11281 hypothetical protein; Provisional
Probab=80.23 E-value=51 Score=39.62 Aligned_cols=27 Identities=15% Similarity=0.350 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013864 178 SDKLDKEVDDVTRDIEAYEACLQRLEG 204 (435)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~fL~~L~~ 204 (435)
.+.|+++++++.++.....+-|+++++
T Consensus 82 ~~~L~k~l~~Ap~~l~~a~~~Le~Lk~ 108 (1113)
T PRK11281 82 TEQLKQQLAQAPAKLRQAQAELEALKD 108 (1113)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhhc
Confidence 445666666666666666666666654
No 200
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.05 E-value=98 Score=33.89 Aligned_cols=68 Identities=13% Similarity=0.161 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 230 EAAIEETEKQNAEVNAELKELELKSKRFK----------------ELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQ 293 (435)
Q Consensus 230 ~~eL~~lE~e~~~l~~el~~le~e~~~L~----------------~eE~~~w~e~n~~q~qL~~~~ee~~sl~~q~~~~~ 293 (435)
..+|+++|.+...+.++++.-+...+.|- +--.++-....+..-+.....++...+.-+....+
T Consensus 344 ~~~IqeleqdL~a~~eei~~~eel~~~Lrsele~lp~dv~rk~ytqrikEi~gniRKq~~DI~Kil~etreLqkq~ns~s 423 (521)
T KOG1937|consen 344 IRRIQELEQDLEAVDEEIESNEELAEKLRSELEKLPDDVQRKVYTQRIKEIDGNIRKQEQDIVKILEETRELQKQENSES 423 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666653332222221 11112233333444445555666666666666666
Q ss_pred HHHH
Q 013864 294 AHLE 297 (435)
Q Consensus 294 ~qLd 297 (435)
.+|+
T Consensus 424 e~L~ 427 (521)
T KOG1937|consen 424 EALN 427 (521)
T ss_pred HHHh
Confidence 5554
No 201
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=80.04 E-value=68 Score=32.59 Aligned_cols=30 Identities=7% Similarity=0.289 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 221 KIEEEERKLEAAIEETEKQNAEVNAELKEL 250 (435)
Q Consensus 221 ~Le~EE~~L~~eL~~lE~e~~~l~~el~~l 250 (435)
.+..+-....+.|..+..+.+.|+..|+..
T Consensus 173 ~~~~~~~~~~~~l~~l~~de~~Le~KIekk 202 (267)
T PF10234_consen 173 AVQQQLQQTQQQLNNLASDEANLEAKIEKK 202 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555554444433
No 202
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=79.85 E-value=21 Score=42.79 Aligned_cols=22 Identities=5% Similarity=0.146 Sum_probs=15.4
Q ss_pred ccchHHHHHHHHHHHHHHHHHh
Q 013864 395 TRYDKAMTLFLSCLKDFAEFAN 416 (435)
Q Consensus 395 ~kFD~AMvaFLdCL~Q~~e~v~ 416 (435)
-+|+..+....+-++|....+.
T Consensus 670 ~~~e~~lk~~q~~~eq~~~E~~ 691 (1317)
T KOG0612|consen 670 IKLERKLKMLQNELEQENAEHH 691 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777777777665554
No 203
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=79.65 E-value=97 Score=36.42 Aligned_cols=10 Identities=30% Similarity=0.434 Sum_probs=7.8
Q ss_pred eccccCCCCC
Q 013864 320 INNFRLGRLP 329 (435)
Q Consensus 320 INGlRLGrlp 329 (435)
||.++|-+-.
T Consensus 563 i~ql~l~~~~ 572 (980)
T KOG0980|consen 563 INQLELDSSA 572 (980)
T ss_pred HHHhhccccc
Confidence 8999988653
No 204
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=79.39 E-value=1e+02 Score=33.92 Aligned_cols=93 Identities=17% Similarity=0.203 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 216 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELE---LKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVS 292 (435)
Q Consensus 216 ~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le---~e~~~L~~eE~~~w~e~n~~q~qL~~~~ee~~sl~~q~~~~ 292 (435)
...+..+..-.++-...++++-...+++.+++..++ .+.+.|+++.+++++.+...-.+|... |...-. ...
T Consensus 307 e~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL~~l~~~~~~le~L~~el~~l~~~l~~~a~~Ls~~---R~~~a~--~l~ 381 (563)
T TIGR00634 307 EERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQLDDSDESLEALEEEVDKLEEELDKAAVALSLI---RRKAAE--RLA 381 (563)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH--HHH
Confidence 333444444444444456666666666666666654 345566666667777776666555433 222222 222
Q ss_pred HHHHHHHhhcccCCCceeeee
Q 013864 293 QAHLELLKRTNVLNDAFPIWH 313 (435)
Q Consensus 293 ~~qLdkLrktNV~Nd~F~I~h 313 (435)
..-...|+..+.-+..|+|..
T Consensus 382 ~~v~~~l~~L~m~~~~f~v~~ 402 (563)
T TIGR00634 382 KRVEQELKALAMEKAEFTVEI 402 (563)
T ss_pred HHHHHHHHhCCCCCcEEEEEE
Confidence 233456677788888998864
No 205
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=79.37 E-value=50 Score=37.25 Aligned_cols=29 Identities=21% Similarity=0.059 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013864 272 QFQLIAHQEERDAISSKIEVSQAHLELLK 300 (435)
Q Consensus 272 q~qL~~~~ee~~sl~~q~~~~~~qLdkLr 300 (435)
+.++.+++.+.+.....|+....+++.++
T Consensus 375 ~~e~~~L~Re~~~~~~~Y~~ll~r~~e~~ 403 (754)
T TIGR01005 375 QVDLDALQRDAAAKRQLYESYLTNYRQAA 403 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566666666666666655555544
No 206
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=79.29 E-value=28 Score=34.70 Aligned_cols=15 Identities=7% Similarity=0.169 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHH
Q 013864 182 DKEVDDVTRDIEAYE 196 (435)
Q Consensus 182 d~qle~~~~E~d~Y~ 196 (435)
+.+++.++.+...-.
T Consensus 79 ~~~l~~a~a~l~~~~ 93 (334)
T TIGR00998 79 ELALAKAEANLAALV 93 (334)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444443333
No 207
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=79.28 E-value=1e+02 Score=34.09 Aligned_cols=154 Identities=18% Similarity=0.170 Sum_probs=72.2
Q ss_pred CcccchHHHHHHHHHhhcCCc-ccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--------------
Q 013864 143 SGFHSTITVLKRAFEIATSQT-QVEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEAR-------------- 207 (435)
Q Consensus 143 ~~ls~~i~~l~~lFdILSs~s-~IDhPLC~eC~d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~-------------- 207 (435)
..|..+++.+..-|+-...-+ +=|| .=+.-++..++.++..++...+.-=..++.+...-.
T Consensus 164 ~~Le~~L~~ie~~F~~f~~lt~~GD~----~~A~eil~~l~~~~~~l~~~~e~IP~l~~~l~~~~P~ql~eL~~gy~~m~ 239 (560)
T PF06160_consen 164 EELEKQLENIEEEFSEFEELTENGDY----LEAREILEKLKEETDELEEIMEDIPKLYKELQKEFPDQLEELKEGYREME 239 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCH----HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 345555666666554432211 1133 235566667777777776666654444443332100
Q ss_pred ---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 013864 208 ---DVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDA 284 (435)
Q Consensus 208 ---~~~~ee~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~~eE~~~w~e~n~~q~qL~~~~ee~~s 284 (435)
=.+...++.+++..+++....+...|+.+ +..++...+..+..++..|-+.=++=-..++.....+..+.+-..-
T Consensus 240 ~~gy~l~~~~i~~~i~~i~~~l~~~~~~L~~l--~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~ 317 (560)
T PF06160_consen 240 EEGYYLEHLDIEEEIEQIEEQLEEALALLKNL--ELDEVEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEH 317 (560)
T ss_pred HCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 01223345556666666666555555444 2223333444444444444211111112223333333444444445
Q ss_pred HHHHHHHHHHHHHHHhhc
Q 013864 285 ISSKIEVSQAHLELLKRT 302 (435)
Q Consensus 285 l~~q~~~~~~qLdkLrkt 302 (435)
+..+..+....+++|+..
T Consensus 318 ~~~~~~~l~~e~~~v~~s 335 (560)
T PF06160_consen 318 AKEQNKELKEELERVSQS 335 (560)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 555566666666666654
No 208
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=79.26 E-value=58 Score=38.64 Aligned_cols=36 Identities=25% Similarity=0.351 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 218 EKLKIEEEERKLEAAIEETEKQNAEVNAELKELELK 253 (435)
Q Consensus 218 e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e 253 (435)
++.+|+++-.......++||.+.+++..++..++.+
T Consensus 263 ~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~ 298 (1072)
T KOG0979|consen 263 ELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRE 298 (1072)
T ss_pred HHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHH
Confidence 333344444444444556666666555555555433
No 209
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=79.21 E-value=12 Score=31.00 Aligned_cols=76 Identities=29% Similarity=0.377 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccc---------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 180 KLDKEVDDVTRDIEAYEACLQRLEGEARD---------VLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKEL 250 (435)
Q Consensus 180 ~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~---------~~~ee~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~l 250 (435)
.+..++..++.+......-++.|..-..+ .+-..+...-...|+...+.+..+|+.++++...+..+++++
T Consensus 16 ~~~~q~~~l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~ 95 (106)
T PF01920_consen 16 QLEQQIQQLERQLRELELTLEELEKLDDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKEL 95 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSSTT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555432111 000011233344577777777778888888777777777777
Q ss_pred HHHHH
Q 013864 251 ELKSK 255 (435)
Q Consensus 251 e~e~~ 255 (435)
+.++.
T Consensus 96 ~~~l~ 100 (106)
T PF01920_consen 96 KKKLY 100 (106)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66543
No 210
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=79.15 E-value=95 Score=33.86 Aligned_cols=19 Identities=16% Similarity=0.344 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 013864 178 SDKLDKEVDDVTRDIEAYE 196 (435)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~ 196 (435)
++.++...+..+.|...|.
T Consensus 223 l~l~~~~~~~~~~el~~Yk 241 (511)
T PF09787_consen 223 LELLKAEGESEEAELQQYK 241 (511)
T ss_pred HHHHHHHhHHHHHHHHHHH
Confidence 3444444444555666666
No 211
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=79.08 E-value=23 Score=35.41 Aligned_cols=39 Identities=21% Similarity=0.228 Sum_probs=30.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 013864 266 QEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNV 304 (435)
Q Consensus 266 ~e~n~~q~qL~~~~ee~~sl~~q~~~~~~qLdkLrktNV 304 (435)
.++.-|+....++++|+.....++...+.++++|++-||
T Consensus 86 sQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~ 124 (248)
T PF08172_consen 86 SQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNV 124 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556777777888888888888888888999998887
No 212
>PF05149 Flagellar_rod: Paraflagellar rod protein; InterPro: IPR007824 This family consists of several eukaryotic paraflagellar rod component proteins. The eukaryotic flagellum represents one of the most complex macromolecular structures found in any organism and contains more than 250 proteins []. In addition to its locomotive role, the flagellum is probably involved in nutrient uptake since receptors for host low-density lipoproteins are localised on the flagellar membrane as well as on the flagellar pocket membrane [].; GO: 0005516 calmodulin binding, 0009434 microtubule-based flagellum
Probab=79.01 E-value=82 Score=32.39 Aligned_cols=113 Identities=20% Similarity=0.219 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 217 KEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHL 296 (435)
Q Consensus 217 ~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~~eE~~~w~e~n~~q~qL~~~~ee~~sl~~q~~~~~~qL 296 (435)
+.+.+..+....+-.+|.+|+++...+..+...+-..--++.++|++--..++.| +..+..|.
T Consensus 52 ~~l~~n~e~q~~lw~~i~el~~~L~~l~~er~~~v~~ri~~~eqE~~R~~~~~~F-----------------l~~~~qh~ 114 (289)
T PF05149_consen 52 KFLQKNEEQQQELWREIQELERELQDLAEERREEVERRIEMREQEAKRRTAAEEF-----------------LQAASQHK 114 (289)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHH
Confidence 4455566777777788888888888877777666444444455554444444444 44445555
Q ss_pred HHHhhcccCCCceeeeecCCeeeeccccCCCCCCCCCChhHHHHHHHHHHHHHH
Q 013864 297 ELLKRTNVLNDAFPIWHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLH 350 (435)
Q Consensus 297 dkLrktNV~Nd~F~I~hdG~fGTINGlRLGrlp~~~V~W~EINAAwGQ~~LLL~ 350 (435)
.+|++| +.|- .=|-+. -+.++++=....|..+=-|+-.+-|.+...+..+
T Consensus 115 q~L~~~-~~n~--~~~~~~-~~~~~~~V~~~~~~l~~~~d~~~~~~~el~~~~~ 164 (289)
T PF05149_consen 115 QRLRRC-EENC--DRALSC-AESLEEYVQEGCPKLPKKHDKAQEALAELLLEEA 164 (289)
T ss_pred HHHHHH-HHHH--HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555554 1110 011121 2557777666666655559999999998776654
No 213
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=78.88 E-value=58 Score=32.69 Aligned_cols=12 Identities=17% Similarity=0.252 Sum_probs=7.4
Q ss_pred HHHHHHHHhhcC
Q 013864 150 TVLKRAFEIATS 161 (435)
Q Consensus 150 ~~l~~lFdILSs 161 (435)
+...+.|+-|++
T Consensus 73 eLA~kf~eeLrg 84 (290)
T COG4026 73 ELAEKFFEELRG 84 (290)
T ss_pred HHHHHHHHHHHH
Confidence 344567777765
No 214
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=78.88 E-value=13 Score=29.66 Aligned_cols=42 Identities=24% Similarity=0.421 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 216 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 257 (435)
Q Consensus 216 ~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L 257 (435)
.+|+.+....-..+...|++.++...++.++|..|+.+.+.+
T Consensus 17 ~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~ 58 (61)
T PF08826_consen 17 QEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEEL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555555555666677777777777777777776665544
No 215
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=78.61 E-value=96 Score=34.05 Aligned_cols=38 Identities=24% Similarity=0.289 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 258 KELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAH 295 (435)
Q Consensus 258 ~~eE~~~w~e~n~~q~qL~~~~ee~~sl~~q~~~~~~q 295 (435)
+..|++|....-.||.--.+..+||+.|..+++-.-+|
T Consensus 488 e~~EqefLslqeEfQk~ekenl~ERqkLKs~leKLvaq 525 (527)
T PF15066_consen 488 ETREQEFLSLQEEFQKHEKENLEERQKLKSRLEKLVAQ 525 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 44555676666677766666777888887776655444
No 216
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=78.50 E-value=53 Score=33.82 Aligned_cols=28 Identities=21% Similarity=0.211 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 220 LKIEEEERKLEAAIEETEKQNAEVNAEL 247 (435)
Q Consensus 220 ~~Le~EE~~L~~eL~~lE~e~~~l~~el 247 (435)
..|--+-.-|...|+++|....++..++
T Consensus 108 ~~l~yqvd~Lkd~lee~eE~~~~~~re~ 135 (302)
T PF09738_consen 108 SALMYQVDLLKDKLEELEETLAQLQREY 135 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444
No 217
>PRK12704 phosphodiesterase; Provisional
Probab=78.50 E-value=1.1e+02 Score=33.66 Aligned_cols=13 Identities=23% Similarity=0.189 Sum_probs=5.6
Q ss_pred ceeeeecCCeeee
Q 013864 308 AFPIWHDGEFGTI 320 (435)
Q Consensus 308 ~F~I~hdG~fGTI 320 (435)
++++-.|.--|-|
T Consensus 213 ~v~lp~d~mkgri 225 (520)
T PRK12704 213 VVNLPNDEMKGRI 225 (520)
T ss_pred eeecCCchhhcce
Confidence 3444444444444
No 218
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=78.46 E-value=1.1e+02 Score=36.65 Aligned_cols=13 Identities=23% Similarity=0.322 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHH
Q 013864 181 LDKEVDDVTRDIE 193 (435)
Q Consensus 181 Ld~qle~~~~E~d 193 (435)
|.++.++++..+.
T Consensus 413 Ls~k~e~Leeri~ 425 (1195)
T KOG4643|consen 413 LSKKHEILEERIN 425 (1195)
T ss_pred HhHHHHHHHHHHH
Confidence 4444444444333
No 219
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=78.18 E-value=1.1e+02 Score=33.55 Aligned_cols=34 Identities=18% Similarity=0.182 Sum_probs=14.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 266 QEFNNFQFQLIAHQEERDAISSKIEVSQAHLELL 299 (435)
Q Consensus 266 ~e~n~~q~qL~~~~ee~~sl~~q~~~~~~qLdkL 299 (435)
......+..|.....+.....+--..+..++..|
T Consensus 407 a~i~t~E~rL~aa~ke~eaaKasEa~Ala~ik~l 440 (522)
T PF05701_consen 407 AAIKTAEERLEAALKEAEAAKASEALALAEIKAL 440 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333344444444444444444444444444444
No 220
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=78.15 E-value=1.3e+02 Score=34.90 Aligned_cols=32 Identities=22% Similarity=0.294 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 222 IEEEERKLEAAIEETEKQNAEVNAELKELELK 253 (435)
Q Consensus 222 Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e 253 (435)
.+.+...|..+++.|..+.++....+.+....
T Consensus 334 ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~ 365 (775)
T PF10174_consen 334 KEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQ 365 (775)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444433333
No 221
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=78.14 E-value=79 Score=34.39 Aligned_cols=10 Identities=20% Similarity=0.438 Sum_probs=5.2
Q ss_pred HHHHHHhhcc
Q 013864 294 AHLELLKRTN 303 (435)
Q Consensus 294 ~qLdkLrktN 303 (435)
..+.+||.-|
T Consensus 410 qevkrLrq~n 419 (502)
T KOG0982|consen 410 QEVKRLRQPN 419 (502)
T ss_pred HHHHHhcccc
Confidence 3455555554
No 222
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=78.03 E-value=50 Score=29.38 Aligned_cols=21 Identities=19% Similarity=0.528 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 013864 183 KEVDDVTRDIEAYEACLQRLE 203 (435)
Q Consensus 183 ~qle~~~~E~d~Y~~fL~~L~ 203 (435)
.++++.....+.|...+..|.
T Consensus 6 ~~l~~l~~~~~~l~~~~~~l~ 26 (140)
T PRK03947 6 QELEELAAQLQALQAQIEALQ 26 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555544443
No 223
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=78.03 E-value=38 Score=32.30 Aligned_cols=26 Identities=31% Similarity=0.437 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 225 EERKLEAAIEETEKQNAEVNAELKEL 250 (435)
Q Consensus 225 EE~~L~~eL~~lE~e~~~l~~el~~l 250 (435)
|...+.+++++|+++.+++.+++..+
T Consensus 104 eR~~~l~~l~~l~~~~~~l~~el~~~ 129 (188)
T PF03962_consen 104 EREELLEELEELKKELKELKKELEKY 129 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666666666665555543
No 224
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=77.83 E-value=27 Score=33.31 Aligned_cols=30 Identities=33% Similarity=0.446 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 221 KIEEEERKLEAAIEETEKQNAEVNAELKEL 250 (435)
Q Consensus 221 ~Le~EE~~L~~eL~~lE~e~~~l~~el~~l 250 (435)
.++....+|.++++.++.+.+++.+++...
T Consensus 66 ~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~ 95 (188)
T PF03962_consen 66 KRQNKLEKLQKEIEELEKKIEELEEKIEEA 95 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555544444
No 225
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=77.54 E-value=1.4e+02 Score=34.31 Aligned_cols=85 Identities=16% Similarity=0.205 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH-------------HHHHHHHhHHHHHHHHH
Q 013864 216 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF----KELE-------------ERYWQEFNNFQFQLIAH 278 (435)
Q Consensus 216 ~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L----~~eE-------------~~~w~e~n~~q~qL~~~ 278 (435)
.+.+..++........+|..+.++.+.|.+++..-+.+++.. +.+- ...|.+.-.+......+
T Consensus 175 e~~L~~le~~r~~e~~~La~~q~e~d~L~~qLsk~~~~le~q~tlv~~LR~YvGeq~p~~~~~~~we~Er~~L~~tVq~L 254 (739)
T PF07111_consen 175 EKSLESLETRRAGEAKELAEAQREADLLREQLSKTQEELEAQVTLVEQLRKYVGEQVPPEVHSQAWEPEREELLETVQHL 254 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhCCcccccHHHHHHHHHHHHHHHHH
Confidence 333333444333444555555556666666555554443332 1110 11245556666677778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 013864 279 QEERDAISSKIEVSQAHLELLK 300 (435)
Q Consensus 279 ~ee~~sl~~q~~~~~~qLdkLr 300 (435)
+++++++....+..+..+..|.
T Consensus 255 ~edR~~L~~T~ELLqVRvqSLt 276 (739)
T PF07111_consen 255 QEDRDALQATAELLQVRVQSLT 276 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999888877776665543
No 226
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=77.27 E-value=13 Score=39.45 Aligned_cols=75 Identities=19% Similarity=0.232 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 224 EEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELL 299 (435)
Q Consensus 224 ~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~~eE~~~w~e~n~~q~qL~~~~ee~~sl~~q~~~~~~qLdkL 299 (435)
++..+|.++++++..+.+++++.+..++.... ........-..+..+......+.++...+..++...+.+++++
T Consensus 334 ~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~-~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 334 EKLEELEEELEELKEELEKLKKNLKKLKKLKK-QGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc-cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33344444444444444444444444443111 1111112223445555555666666667777777777777776
No 227
>COG1345 FliD Flagellar capping protein [Cell motility and secretion]
Probab=77.05 E-value=8.6 Score=41.86 Aligned_cols=54 Identities=22% Similarity=0.343 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013864 237 EKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLK 300 (435)
Q Consensus 237 E~e~~~l~~el~~le~e~~~L~~eE~~~w~e~n~~q~qL~~~~ee~~sl~~q~~~~~~qLdkLr 300 (435)
.++...++.+++.+.. +++..|++||..||.+...+...+. |..+.+++|..++
T Consensus 428 ~~~i~~l~~~i~~~~~---rl~~~e~~~~~qf~~m~~~~~~m~s-------q~~~L~q~l~~~~ 481 (483)
T COG1345 428 NKQIKSLDKDIKSLDK---RLEAAEERYKTQFNTLDDMMTQMNS-------QSSYLTQQLVSVS 481 (483)
T ss_pred hHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhhcc
Confidence 3444445555555543 5788899999999999777655544 4555555554443
No 228
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=76.99 E-value=9.4 Score=39.29 Aligned_cols=63 Identities=21% Similarity=0.241 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 232 AIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQA 294 (435)
Q Consensus 232 eL~~lE~e~~~l~~el~~le~e~~~L~~eE~~~w~e~n~~q~qL~~~~ee~~sl~~q~~~~~~ 294 (435)
++++++.+.++..++|.+.+.++..++..-..+-++|.....+...++++......++..+..
T Consensus 222 ~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~ 284 (344)
T PF12777_consen 222 KLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEK 284 (344)
T ss_dssp HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHH
Confidence 333333333333333333333333333333333334444444444444444444444444443
No 229
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=76.87 E-value=54 Score=30.41 Aligned_cols=85 Identities=18% Similarity=0.284 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--c---cC--------------C--------------CHHHHHHHHHH
Q 013864 175 RVLSDKLDKEVDDVTRDIEAYEACLQRLEGEA--R---DV--------------L--------------SEADFLKEKLK 221 (435)
Q Consensus 175 d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~--~---~~--------------~--------------~ee~l~~e~~~ 221 (435)
+..++.|+.++..++.-+..++.+++.|+.-. . +. . -+.++.+..+-
T Consensus 19 ~~qie~L~~~i~~l~~~~~e~~~~~~tl~~lk~~~~g~E~LVpvGag~fv~~kv~~~~kviV~iGsg~~ae~~~~eAie~ 98 (145)
T COG1730 19 QSQIESLQAQIAALNAAISELQTAIETLENLKGAGEGKEVLVPVGAGLFVKAKVKDMDKVIVSIGSGYYAEKSADEAIEF 98 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCceEEEEeccCceEEEEcCCceeeeecHHHHHHH
Confidence 34567777777777777777777777665210 0 00 0 01223344445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 222 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKE 259 (435)
Q Consensus 222 Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~~ 259 (435)
|++..++|.+.++.++.+.+++.+.+..++.+...+..
T Consensus 99 l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q 136 (145)
T COG1730 99 LKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQ 136 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555666666666666666666655555555544443
No 230
>PRK07737 fliD flagellar capping protein; Validated
Probab=76.87 E-value=10 Score=41.26 Aligned_cols=51 Identities=16% Similarity=0.396 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 013864 235 ETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSK 288 (435)
Q Consensus 235 ~lE~e~~~l~~el~~le~e~~~L~~eE~~~w~e~n~~q~qL~~~~ee~~sl~~q 288 (435)
.|.++...++.++..++. +++..|++||+.|+.++.-+..++.+...|..+
T Consensus 445 ~l~~~i~~l~~~i~~~~~---rl~~~e~ry~~qf~ale~~~s~mnsq~s~L~~~ 495 (501)
T PRK07737 445 AIGKDLNQIETQIDRFQD---RLKQIEDRYYKKFSAMEKAIQKANEQSMYLMNA 495 (501)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666666664 356778899999999988776665554444333
No 231
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=76.84 E-value=1.3e+02 Score=33.71 Aligned_cols=65 Identities=25% Similarity=0.281 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----H--HHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 013864 223 EEEERKLEAAIEETEKQNAEVNAELKELELKSKRF-----K--ELEERYWQEFNNFQFQLIAHQEERDAISS 287 (435)
Q Consensus 223 e~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L-----~--~eE~~~w~e~n~~q~qL~~~~ee~~sl~~ 287 (435)
+.++..+.++++.|.+++.+.+.++.........| + +...---++|...+.++.++|++.+..+.
T Consensus 413 ~~~~~~~~e~~~~L~qqlD~kd~~~n~~sqL~~~lk~q~~~qee~~s~~~~~~e~~q~e~~~~Q~~~e~~~~ 484 (607)
T KOG0240|consen 413 EEEEDILTERIESLYQQLDQKDDQINKQSQLMEKLKEQLLDQEELLSSTRRLYEDIQQELSEIQEENEAAKD 484 (607)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667778888888887777666665543222222 2 22223345666666776666665544433
No 232
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=76.51 E-value=69 Score=35.95 Aligned_cols=26 Identities=27% Similarity=0.509 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013864 178 SDKLDKEVDDVTRDIEAYEACLQRLE 203 (435)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~fL~~L~ 203 (435)
++.|+.+++++..++..+...++.+.
T Consensus 330 l~~l~~~l~~l~~~i~~~~~~~~~l~ 355 (594)
T PF05667_consen 330 LEELQEQLDELESQIEELEAEIKMLK 355 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666555554
No 233
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=76.43 E-value=13 Score=38.01 Aligned_cols=15 Identities=20% Similarity=0.554 Sum_probs=12.3
Q ss_pred ccCCcchHHHHHHHH
Q 013864 164 QVEQPLCLECMRVLS 178 (435)
Q Consensus 164 ~IDhPLC~eC~d~Ll 178 (435)
.--|++|..|.|.|.
T Consensus 22 ~C~H~lCEsCvd~iF 36 (300)
T KOG3800|consen 22 ECGHRLCESCVDRIF 36 (300)
T ss_pred cccchHHHHHHHHHH
Confidence 667899999998884
No 234
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=76.39 E-value=81 Score=35.65 Aligned_cols=28 Identities=21% Similarity=0.242 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 174 MRVLSDKLDKEVDDVTRDIEAYEACLQR 201 (435)
Q Consensus 174 ~d~Lle~Ld~qle~~~~E~d~Y~~fL~~ 201 (435)
+....+.|+.|+.++.++...-+.-++.
T Consensus 192 ~~~a~~~L~~ql~~l~~~l~~aE~~l~~ 219 (754)
T TIGR01005 192 NTAAADFLAPEIADLSKQSRDAEAEVAA 219 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555554444443333
No 235
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=75.92 E-value=1.5e+02 Score=34.38 Aligned_cols=37 Identities=16% Similarity=0.179 Sum_probs=17.1
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013864 265 WQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 301 (435)
Q Consensus 265 w~e~n~~q~qL~~~~ee~~sl~~q~~~~~~qLdkLrk 301 (435)
=++.+.++.++..++.|+..-....++...--|...|
T Consensus 147 eken~~Lkye~~~~~keleir~~E~~~~~~~ae~a~k 183 (769)
T PF05911_consen 147 EKENSSLKYELHVLSKELEIRNEEREYSRRAAEAASK 183 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3455555555555555555444444444433333333
No 236
>PRK06664 fliD flagellar hook-associated protein FliD; Validated
Probab=75.92 E-value=8.7 Score=43.34 Aligned_cols=54 Identities=11% Similarity=0.209 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 013864 233 IEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKI 289 (435)
Q Consensus 233 L~~lE~e~~~l~~el~~le~e~~~L~~eE~~~w~e~n~~q~qL~~~~ee~~sl~~q~ 289 (435)
.+.|+++...++.++++++. +|+..|++||+.|..++..+..++.....|.+++
T Consensus 602 ~~~l~~~i~~l~~~i~~~e~---rl~~~e~rl~~QFtaME~~msqmnsqss~L~~~~ 655 (661)
T PRK06664 602 VKGLDERIADNNKKIEEYEK---KLESKERKLKGKYLTMDQTVKKMKEQSNYLKNFN 655 (661)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555556555555554 5778899999999999887766655544444443
No 237
>cd07674 F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 1 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH domain Only 1 (FCHO1) may be involved in clathrin-coated vesicle formation. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO2 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=75.80 E-value=87 Score=31.01 Aligned_cols=18 Identities=22% Similarity=0.298 Sum_probs=13.2
Q ss_pred eccccCCCCCCCCCChhH
Q 013864 320 INNFRLGRLPKIPVEWDE 337 (435)
Q Consensus 320 INGlRLGrlp~~~V~W~E 337 (435)
|+...-|.-|..||+..|
T Consensus 244 v~~~~tG~~~P~~~~fE~ 261 (261)
T cd07674 244 AESKGTGKERPGPVGFEE 261 (261)
T ss_pred HHhCCCCCCCCCCCCCCC
Confidence 677777888888877643
No 238
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=75.73 E-value=71 Score=29.95 Aligned_cols=54 Identities=26% Similarity=0.457 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 013864 221 KIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQ 274 (435)
Q Consensus 221 ~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~~eE~~~w~e~n~~q~q 274 (435)
.++.|.+.|...+..|+.+...+...++.+.....++++.|.+.-++|+.+.-.
T Consensus 86 ~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~~e~~~l~er 139 (158)
T PF09744_consen 86 QWRQERKDLQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELKKEYNRLHER 139 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHH
Confidence 356666666666777777666666555555555556666666655566665543
No 239
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=75.71 E-value=1.5e+02 Score=35.83 Aligned_cols=18 Identities=28% Similarity=-0.014 Sum_probs=12.3
Q ss_pred CCChhHHHHHHHHHHHHH
Q 013864 332 PVEWDEINAAWGQACLLL 349 (435)
Q Consensus 332 ~V~W~EINAAwGQ~~LLL 349 (435)
-..--|+|.+++|...=.
T Consensus 260 i~~~~~~N~~Ls~~L~~~ 277 (1109)
T PRK10929 260 IVAQFKINRELSQALNQQ 277 (1109)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455668899988865443
No 240
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=75.56 E-value=58 Score=29.97 Aligned_cols=29 Identities=28% Similarity=0.461 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 222 IEEEERKLEAAIEETEKQNAEVNAELKEL 250 (435)
Q Consensus 222 Le~EE~~L~~eL~~lE~e~~~l~~el~~l 250 (435)
+..+...|.+++.+++++...+..++..|
T Consensus 77 ld~ei~~L~~el~~l~~~~k~l~~eL~~L 105 (169)
T PF07106_consen 77 LDAEIKELREELAELKKEVKSLEAELASL 105 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444333
No 241
>PF15294 Leu_zip: Leucine zipper
Probab=75.51 E-value=75 Score=32.54 Aligned_cols=79 Identities=22% Similarity=0.305 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHhHHHHH
Q 013864 215 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF--------------------KELEERYWQEFNNFQFQ 274 (435)
Q Consensus 215 l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L--------------------~~eE~~~w~e~n~~q~q 274 (435)
+.+|+.+|.+|-.+|...|..+|++.-....|-..++.++..+ .++|...-..-+.|+..
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~a~lK~e~ek~ 209 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQKGKKDLSFKAQDLSDLENKMAALKSELEKA 209 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHHHHHH
Confidence 5678888888888888888888766554444444444333333 23455554444555554
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 013864 275 LIAHQEERDAISSKIEVSQ 293 (435)
Q Consensus 275 L~~~~ee~~sl~~q~~~~~ 293 (435)
+........+++.-+..+.
T Consensus 210 ~~d~~~~~k~L~e~L~~~K 228 (278)
T PF15294_consen 210 LQDKESQQKALEETLQSCK 228 (278)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444433
No 242
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=75.04 E-value=86 Score=35.39 Aligned_cols=9 Identities=33% Similarity=0.560 Sum_probs=4.6
Q ss_pred HHHHHHHHH
Q 013864 399 KAMTLFLSC 407 (435)
Q Consensus 399 ~AMvaFLdC 407 (435)
.||++|+.+
T Consensus 345 E~m~~f~~~ 353 (617)
T PF15070_consen 345 EAMVEFFNS 353 (617)
T ss_pred HHHHHHHHH
Confidence 455555543
No 243
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=74.90 E-value=95 Score=32.42 Aligned_cols=31 Identities=6% Similarity=0.081 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013864 174 MRVLSDKLDKEVDDVTRDIEAYEACLQRLEG 204 (435)
Q Consensus 174 ~d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~ 204 (435)
+....+.|+.|+..+.++.+..+.-|+..+.
T Consensus 169 ~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~ 199 (444)
T TIGR03017 169 AQKAALWFVQQIAALREDLARAQSKLSAYQQ 199 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445777888888888888877777766654
No 244
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=74.83 E-value=79 Score=35.19 Aligned_cols=107 Identities=16% Similarity=0.270 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-------CCCceeee
Q 013864 240 NAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNV-------LNDAFPIW 312 (435)
Q Consensus 240 ~~~l~~el~~le~e~~~L~~eE~~~w~e~n~~q~qL~~~~ee~~sl~~q~~~~~~qLdkLrktNV-------~Nd~F~I~ 312 (435)
...+...++.++..+...+....++-...+.+..+-.+.++....+..++.-....+ .|.|+ +...|+++
T Consensus 377 yS~lq~~l~~~~~~l~~i~~~q~~~~e~L~~LrkdEl~Are~l~~~~~~l~eikR~m---ek~nLPGlPe~~l~l~~~~~ 453 (570)
T COG4477 377 YSELQDNLEEIEKALTDIEDEQEKVQEHLTSLRKDELEARENLERLKSKLHEIKRYM---EKSNLPGLPETFLSLFFTAG 453 (570)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHcCCCCCcHHHHHHHHhhh
Confidence 334555566666666666665556666666666665555555555555555444433 55665 33456666
Q ss_pred ecCCeeeeccccCCCCCCCCCChhHHHHHHHHHHHHHHHHHhh
Q 013864 313 HDGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMCQY 355 (435)
Q Consensus 313 hdG~fGTINGlRLGrlp~~~V~W~EINAAwGQ~~LLL~tla~k 355 (435)
|.=. .+++ +|++ +|+.-..+++-|-++.-.++++...
T Consensus 454 ~~i~-~l~~--eLse---~pinm~~v~~~v~~a~~~m~~l~~~ 490 (570)
T COG4477 454 HEIQ-DLMK--ELSE---VPINMEAVSALVDIATEDMNTLEDE 490 (570)
T ss_pred hHHH-HHHH--HHhh---cCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 6411 1122 3444 5889999999999998888876543
No 245
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.81 E-value=36 Score=34.23 Aligned_cols=50 Identities=18% Similarity=0.272 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccCCCceeeeecCCeeeeccccCCCCC
Q 013864 278 HQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGRLP 329 (435)
Q Consensus 278 ~~ee~~sl~~q~~~~~~qLdkLrktNV~Nd~F~I~hdG~fGTINGlRLGrlp 329 (435)
+.+.++++-|.+..+.++.-...-.=|-+++ .|.+.|+|-||||-|+ ..|
T Consensus 137 ~~~dl~~viNeL~~sGAEaIsIn~~RI~~~t-~Ir~v~g~~~vdg~~~-~~P 186 (247)
T COG3879 137 HDDDLQAVINELNISGAEAISINGQRIGSNT-TIRCVGGTLLVDGRRL-SAP 186 (247)
T ss_pred CHHHHHHHHHHHHhccchheeECCEEeecce-EEEecCCeEEECCeec-CCC
Confidence 3344444444444444443333222222222 3555689999999999 444
No 246
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=74.61 E-value=54 Score=33.65 Aligned_cols=28 Identities=11% Similarity=0.294 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013864 273 FQLIAHQEERDAISSKIEVSQAHLELLK 300 (435)
Q Consensus 273 ~qL~~~~ee~~sl~~q~~~~~~qLdkLr 300 (435)
.+|...+-....++.|+..+..++++|.
T Consensus 88 hdlq~Ke~qv~~lEgQl~s~Kkqie~Le 115 (307)
T PF10481_consen 88 HDLQVKESQVNFLEGQLNSCKKQIEKLE 115 (307)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455566666666666666664
No 247
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=74.61 E-value=1e+02 Score=36.29 Aligned_cols=55 Identities=22% Similarity=0.292 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCceeee
Q 013864 258 KELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIW 312 (435)
Q Consensus 258 ~~eE~~~w~e~n~~q~qL~~~~ee~~sl~~q~~~~~~qLdkLrktNV~Nd~F~I~ 312 (435)
-..|+.|-.+...+.-.+.+...+++++.++++...+.+-.-+.--+.-+-|...
T Consensus 994 aRh~kefE~~mrdhrselEe~kKe~eaiineiee~eaeIiQekE~el~e~efka~ 1048 (1424)
T KOG4572|consen 994 ARHEKEFEIEMRDHRSELEEKKKELEAIINEIEELEAEIIQEKEGELIEDEFKAL 1048 (1424)
T ss_pred HHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHhhhc
Confidence 3455566667777777777778888888888887777666655555555555543
No 248
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=74.48 E-value=51 Score=38.08 Aligned_cols=17 Identities=29% Similarity=0.169 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 013864 337 EINAAWGQACLLLHTMC 353 (435)
Q Consensus 337 EINAAwGQ~~LLL~tla 353 (435)
||-||=|..|=.=-||+
T Consensus 734 EiaaAA~KLAECQeTI~ 750 (769)
T PF05911_consen 734 EIAAAAEKLAECQETIA 750 (769)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 89899888877766766
No 249
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=74.47 E-value=28 Score=28.20 Aligned_cols=30 Identities=17% Similarity=0.199 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 222 IEEEERKLEAAIEETEKQNAEVNAELKELE 251 (435)
Q Consensus 222 Le~EE~~L~~eL~~lE~e~~~l~~el~~le 251 (435)
|+..-..|....++|..|...+.+++..++
T Consensus 5 Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~ 34 (65)
T TIGR02449 5 LAAQVEHLLEYLERLKSENRLLRAQEKTWR 34 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444433333
No 250
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=74.44 E-value=50 Score=33.84 Aligned_cols=22 Identities=32% Similarity=0.398 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 013864 279 QEERDAISSKIEVSQAHLELLK 300 (435)
Q Consensus 279 ~ee~~sl~~q~~~~~~qLdkLr 300 (435)
+.+.+.+.+++..++.+|+.++
T Consensus 157 ~~~~~~~~~~l~~~~~~l~~~~ 178 (370)
T PRK11578 157 QAQIGTIDAQIKRNQASLDTAK 178 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555544
No 251
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=74.35 E-value=90 Score=30.52 Aligned_cols=22 Identities=23% Similarity=0.276 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 013864 221 KIEEEERKLEAAIEETEKQNAE 242 (435)
Q Consensus 221 ~Le~EE~~L~~eL~~lE~e~~~ 242 (435)
++..|...+.+.|..+|+....
T Consensus 73 ~~~~erdq~~~dL~s~E~sfsd 94 (207)
T PF05010_consen 73 KLLKERDQAYADLNSLEKSFSD 94 (207)
T ss_pred HHHhhHHHHHHHHHHHHhhHHH
Confidence 3333444444444444443333
No 252
>cd07593 BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) domain of Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This subfamily is composed predominantly of uncharacterized fungal proteins with similarity to Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein (MUG137), which may play a role in meiosis and sporulation in fission yeast. MUG137 contains an N-terminal BAR domain and a C-terminal SH3 domain, similar to endophilins. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invol
Probab=74.31 E-value=66 Score=31.50 Aligned_cols=58 Identities=17% Similarity=0.417 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013864 227 RKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLK 300 (435)
Q Consensus 227 ~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~~eE~~~w~e~n~~q~qL~~~~ee~~sl~~q~~~~~~qLdkLr 300 (435)
..++.||+..+.+.++- .+........+.+-|-.+++.+..| +++|++|.+.-.+.|+
T Consensus 145 ~~~eeElr~Ae~kfees---~E~a~~~M~~i~~~e~e~~~~L~~l-------------v~AQl~Yh~q~~e~L~ 202 (215)
T cd07593 145 SRLEEELRRAKAKYEES---SEDVEARMVAIKESEADQYRDLTDL-------------LDAELDYHQQSLDVLR 202 (215)
T ss_pred hhHHHHHHHHHHHHHHH---HHHHHHHHHHHHhcChHHHHHHHHH-------------HHHHHHHHHHHHHHHH
Confidence 34444444444443332 2233333334444445555555554 4556666655444443
No 253
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=74.25 E-value=28 Score=32.67 Aligned_cols=33 Identities=27% Similarity=0.423 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 225 EERKLEAAIEETEKQNAEVNAELKELELKSKRF 257 (435)
Q Consensus 225 EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L 257 (435)
+.+++.+|++++++|.++.+.+++.++++.+.+
T Consensus 155 ~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l 187 (192)
T PF05529_consen 155 ENKKLSEEIEKLKKELEKKEKEIEALKKQSEGL 187 (192)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555444444444444444433
No 254
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=74.05 E-value=1.6e+02 Score=34.21 Aligned_cols=30 Identities=30% Similarity=0.377 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 171 LECMRVLSDKLDKEVDDVTRDIEAYEACLQ 200 (435)
Q Consensus 171 ~eC~d~Lle~Ld~qle~~~~E~d~Y~~fL~ 200 (435)
.++-+.+...+...+..+......+...+.
T Consensus 166 l~~~e~~~~~l~e~~~~~~~~~e~l~~~~~ 195 (908)
T COG0419 166 LEKYEKLSELLKEVIKEAKAKIEELEGQLS 195 (908)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666666666666555
No 255
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=73.81 E-value=87 Score=32.63 Aligned_cols=44 Identities=23% Similarity=0.243 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 214 DFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 257 (435)
Q Consensus 214 ~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L 257 (435)
++.+.+++++..|+.|-.+|+-|-++..++..++.+++....++
T Consensus 256 eit~~LEkI~SREK~lNnqL~~l~q~fr~a~~~lse~~e~y~q~ 299 (384)
T KOG0972|consen 256 EITKALEKIASREKSLNNQLASLMQKFRRATDTLSELREKYKQA 299 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35566777888888888888888888888887777776655544
No 256
>PRK09343 prefoldin subunit beta; Provisional
Probab=73.65 E-value=56 Score=28.98 Aligned_cols=32 Identities=34% Similarity=0.454 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 222 IEEEERKLEAAIEETEKQNAEVNAELKELELK 253 (435)
Q Consensus 222 Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e 253 (435)
+++..+-+..+|+.+|++...+...+.+++.+
T Consensus 76 l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~ 107 (121)
T PRK09343 76 LKERKELLELRSRTLEKQEKKLREKLKELQAK 107 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444554444444444444443
No 257
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=73.53 E-value=1.3e+02 Score=35.42 Aligned_cols=51 Identities=29% Similarity=0.369 Sum_probs=29.4
Q ss_pred hHHHHHHHHHhhcCCcccCCcchHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Q 013864 148 TITVLKRAFEIATSQTQVEQPLCLECMRV-----LSDKLDKEVDDVTRDIEAYEACL 199 (435)
Q Consensus 148 ~i~~l~~lFdILSs~s~IDhPLC~eC~d~-----Lle~Ld~qle~~~~E~d~Y~~fL 199 (435)
+-+++.+.- -||++-+.=-|+=..|+.. -++.+-+.+++..++.++...-|
T Consensus 227 tq~vl~ev~-QLss~~q~ltp~rk~~s~i~E~d~~lq~sak~ieE~m~qlk~kns~L 282 (1265)
T KOG0976|consen 227 TQKVLKEVM-QLSSQKQTLTPLRKTCSMIEEQDMDLQASAKEIEEKMRQLKAKNSVL 282 (1265)
T ss_pred HHHHHHHHH-HHHHhHhhhhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444443 3567777778888899753 24444455555555555554443
No 258
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=72.74 E-value=70 Score=28.51 Aligned_cols=33 Identities=15% Similarity=0.317 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 013864 258 KELEERYWQEFNNFQFQLIAHQEERDAISSKIE 290 (435)
Q Consensus 258 ~~eE~~~w~e~n~~q~qL~~~~ee~~sl~~q~~ 290 (435)
+.++..|=++.+.++....++..+..-|..|++
T Consensus 97 ~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE 129 (132)
T PF07926_consen 97 EEQKEQLEKELSELEQRIEDLNEQNKLLHDQLE 129 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445555555666555555555555555554
No 259
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=72.71 E-value=35 Score=36.94 Aligned_cols=28 Identities=21% Similarity=0.216 Sum_probs=15.2
Q ss_pred cccccCCCCCceeeccCCCCCCCCCCCCC
Q 013864 62 SVLGSTRMDNSFVVLPKQRPQSHGVPPRP 90 (435)
Q Consensus 62 s~~~~~~~d~s~vvl~~~~~~~~~~~~~~ 90 (435)
+.=++.||+.||-+-..+- .+-++|+.|
T Consensus 15 ~~~as~~meSscss~ss~~-GG~~~p~sP 42 (552)
T KOG2129|consen 15 HIDASGRMESSCSSHSSHS-GGGHEPFSP 42 (552)
T ss_pred cccccccccCCcccccCCC-CCCCCCCCC
Confidence 4445677777775544442 233455555
No 260
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=72.45 E-value=1.8e+02 Score=33.04 Aligned_cols=122 Identities=25% Similarity=0.333 Sum_probs=62.1
Q ss_pred HHHHhhcC-----CcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhccc---ccCCC-HHHH-HHHHH
Q 013864 154 RAFEIATS-----QTQVEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEA---CLQRLEGEA---RDVLS-EADF-LKEKL 220 (435)
Q Consensus 154 ~lFdILSs-----~s~IDhPLC~eC~d~Lle~Ld~qle~~~~E~d~Y~~---fL~~L~~~~---~~~~~-ee~l-~~e~~ 220 (435)
.+|+=||+ -.+||-| +|+| .|-++++.+..|.-.... .|+-++.+- .+.++ +.++ .-|++
T Consensus 274 sl~eels~aGs~liGdvdeg-----Adll--GMGrEVeNLilENsqLLetKNALNiVKNDLIakVDeL~~E~~vLrgEle 346 (832)
T KOG2077|consen 274 SLFEELSSAGSGLIGDVDEG-----ADLL--GMGREVENLILENSQLLETKNALNIVKNDLIAKVDELTCEKDVLRGELE 346 (832)
T ss_pred chhhhhhhccccccccccch-----hhhh--cchHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHhhccHHHHHhhHHH
Confidence 56666654 3455544 5555 677777777666554332 222222110 11122 2222 23444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHH-HHHHHHhHHHHHHHHHHHHH
Q 013864 221 KIEEEERKLEAAIEETEKQNAEVNAELKELE-------------LKSKRFKELEE-RYWQEFNNFQFQLIAHQEER 282 (435)
Q Consensus 221 ~Le~EE~~L~~eL~~lE~e~~~l~~el~~le-------------~e~~~L~~eE~-~~w~e~n~~q~qL~~~~ee~ 282 (435)
..++-..+|++.|.++|.|...+.++..+.. ++.+++..-|- +..-++|.++-.|+++|+-.
T Consensus 347 a~kqak~Klee~i~elEEElk~~k~ea~~ar~~~~~~e~ddiPmAqRkRFTRvEMaRVLMeRNqYKErLMELqEav 422 (832)
T KOG2077|consen 347 AVKQAKLKLEEKIRELEEELKKAKAEAEDARQKAKDDEDDDIPMAQRKRFTRVEMARVLMERNQYKERLMELQEAV 422 (832)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4444444455555555555555544444432 22334444443 67778888888888887653
No 261
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=72.36 E-value=22 Score=35.67 Aligned_cols=57 Identities=16% Similarity=0.199 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 013864 214 DFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNN 270 (435)
Q Consensus 214 ~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~~eE~~~w~e~n~ 270 (435)
.+.+..++-+..+.+....+..||+|.+.+..++++|+.|+..+.....+||+..+.
T Consensus 205 A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~~~~~~~~~~~~~ 261 (269)
T KOG3119|consen 205 AVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLRRLFLQLPKPGGA 261 (269)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCC
Confidence 344445555666677788999999999999999999999999999998888876543
No 262
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=72.18 E-value=54 Score=27.01 Aligned_cols=78 Identities=14% Similarity=0.268 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013864 223 EEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEER--YWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLK 300 (435)
Q Consensus 223 e~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~~eE~~--~w~e~n~~q~qL~~~~ee~~sl~~q~~~~~~qLdkLr 300 (435)
+-.-.++.+.+.++.+....+...|..+..++.++.+.+.. .+..-. +...|..+..+..++..++...+..+++|+
T Consensus 13 ~P~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~~~~~~~~~~~~~-y~~KL~~ikkrm~~l~~~l~~lk~R~~~L~ 91 (92)
T PF14712_consen 13 EPDLDRLDQQLQELRQSQEELLQQIDRLNEKLKELNEVEQINEPFDLDP-YVKKLVNIKKRMSNLHERLQKLKKRADKLQ 91 (92)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34445555666666666666666666666665555543321 222222 555566666667777777777777777775
Q ss_pred h
Q 013864 301 R 301 (435)
Q Consensus 301 k 301 (435)
+
T Consensus 92 q 92 (92)
T PF14712_consen 92 Q 92 (92)
T ss_pred C
Confidence 3
No 263
>PRK08724 fliD flagellar capping protein; Validated
Probab=72.15 E-value=18 Score=40.95 Aligned_cols=51 Identities=22% Similarity=0.248 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 013864 234 EETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISS 287 (435)
Q Consensus 234 ~~lE~e~~~l~~el~~le~e~~~L~~eE~~~w~e~n~~q~qL~~~~ee~~sl~~ 287 (435)
+.|.++...++.+++.++. +++..|++||++|+.++..+..++.+..+|.+
T Consensus 620 ~sL~~~i~~l~dqi~~Le~---Rle~~E~Ry~~QFtAMD~~msqMnsQ~s~L~s 670 (673)
T PRK08724 620 KSLREQNYRLNDDQVALDR---RMESLEKRTHAKFAAMQDATGKMQGQLGGMMN 670 (673)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555666665554 46778899999999998877666555544443
No 264
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=71.99 E-value=37 Score=35.74 Aligned_cols=14 Identities=21% Similarity=0.154 Sum_probs=5.7
Q ss_pred ccCc-ceEEeecCcc
Q 013864 26 NCRH-FLCIVGVDSY 39 (435)
Q Consensus 26 ~c~~-~l~i~~~d~~ 39 (435)
+|.. |.+|-=.|+|
T Consensus 66 ~tYnIPV~iWlldty 80 (365)
T KOG2391|consen 66 VTYNIPVIIWLLDTY 80 (365)
T ss_pred CcccceEEEEecccC
Confidence 4443 4444333433
No 265
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=71.99 E-value=37 Score=32.24 Aligned_cols=70 Identities=20% Similarity=0.268 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCC
Q 013864 228 KLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLN 306 (435)
Q Consensus 228 ~L~~eL~~lE~e~~~l~~el~~le~e~~~L~~eE~~~w~e~n~~q~qL~~~~ee~~sl~~q~~~~~~qLdkLrktNV~N 306 (435)
.+.+.++.|+.+.+.+.++|.+|+...+.+.+.=- ..||+.|..|.+-+..++......+.++...++--
T Consensus 82 t~~~R~~lLe~~~~~l~~ri~eLe~~l~~kad~vv---------sYqll~hr~e~ee~~~~l~~le~~~~~~e~~~~~~ 151 (175)
T PRK13182 82 ISSVDFEQLEAQLNTITRRLDELERQLQQKADDVV---------SYQLLQHRREMEEMLERLQKLEARLKKLEPIYITP 151 (175)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---------hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 33455666777777777777777766655544221 34677888888888888888888888888766554
No 266
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=71.98 E-value=71 Score=31.10 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 013864 275 LIAHQEERDAISSKIEVSQAHL 296 (435)
Q Consensus 275 L~~~~ee~~sl~~q~~~~~~qL 296 (435)
+....++++.|+.|......+|
T Consensus 162 l~~v~~Dl~~ie~QV~~Le~~L 183 (195)
T PF12761_consen 162 LKSVREDLDTIEEQVDGLESHL 183 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555444
No 267
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=71.95 E-value=1.7e+02 Score=34.66 Aligned_cols=98 Identities=20% Similarity=0.289 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013864 224 EEERKLEAAIEETEKQNAEVNAELKELELKSKRFKE--LEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 301 (435)
Q Consensus 224 ~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~~--eE~~~w~e~n~~q~qL~~~~ee~~sl~~q~~~~~~qLdkLrk 301 (435)
+|-..|++.++.+..+..++.+++..+..+++.|+. .=...-+.+..++.++.+.-.+-.|+..-...+..+|..+++
T Consensus 774 ~E~~~lEe~~d~~~ee~~el~a~v~~~~~qi~~lE~g~~~a~lr~~~~slk~~l~e~ar~Wasl~~~~~vl~e~l~~~ke 853 (984)
T COG4717 774 EELALLEEAIDALDEEVEELHAQVAALSRQIAQLEGGGTVAELRQRRESLKEDLEEKARKWASLRLAVQVLEEALRLFKE 853 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444445555555556666655555555554431 001222344455555555555555666555666666666655
Q ss_pred c---ccCC---CceeeeecCCeeeec
Q 013864 302 T---NVLN---DAFPIWHDGEFGTIN 321 (435)
Q Consensus 302 t---NV~N---d~F~I~hdG~fGTIN 321 (435)
. -|++ ++|.==.||.|.+|+
T Consensus 854 ~rlP~vi~~A~~~F~hlT~G~Yt~Iy 879 (984)
T COG4717 854 RRLPAVIQEASEFFMHLTDGRYTGIY 879 (984)
T ss_pred hhchHHHHHHHHHHhhccCCceeeee
Confidence 3 2333 456433789999887
No 268
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=71.81 E-value=6 Score=44.60 Aligned_cols=124 Identities=23% Similarity=0.296 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC-CCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 175 RVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDV-LSEAD------FLKEKLKIEEEERKLEAAIEETEKQNAEVNAEL 247 (435)
Q Consensus 175 d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~-~~ee~------l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el 247 (435)
..++..|+++..-+.+||+.|.+-|+....+.... .+..+ +..-.+.+.....++...|+.++++........
T Consensus 398 ~~~~~RLerq~~L~~kE~d~LR~~L~syd~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ele~~l~~l~~~l~~~k~~~ 477 (722)
T PF05557_consen 398 KKLIRRLERQKALATKERDYLRAQLKSYDKEETTMNPSEQDTQRIKEIEDLEQLVDEYKAELEAQLEELEEELSEQKQRN 477 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCchhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 44567788888888999999998888776543211 01000 000011122222233334444444443333322
Q ss_pred HHHHHHHHHHHHHHH-------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 248 KELELKSKRFKELEE-------RYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLEL 298 (435)
Q Consensus 248 ~~le~e~~~L~~eE~-------~~w~e~n~~q~qL~~~~ee~~sl~~q~~~~~~qLdk 298 (435)
..++.+...+.+... .+=..++.++.++..++.+...+..++.....+|++
T Consensus 478 ~~~~~e~~~~~~~~~~~~~~~~~~~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~ 535 (722)
T PF05557_consen 478 ETLEAELKSLKEQLSSNDRSLSSLSEELNELQKEIEELERENERLRQELEELESELEK 535 (722)
T ss_dssp ----------------HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223333222221111 123455566666666666776666666666666665
No 269
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=71.65 E-value=1.4e+02 Score=32.40 Aligned_cols=31 Identities=26% Similarity=0.354 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 013864 243 VNAELKELELKSKRFKELEERYWQEFNNFQF 273 (435)
Q Consensus 243 l~~el~~le~e~~~L~~eE~~~w~e~n~~q~ 273 (435)
+.+++..++++..+++++|++.|..-|.-+.
T Consensus 370 ~~~rl~~ie~~~~~l~e~e~~lwffen~~~i 400 (429)
T PF10037_consen 370 RKERLEEIEKEDKELYEQEQQLWFFENEDKI 400 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 5677778888888899999999987777554
No 270
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=71.58 E-value=1.8e+02 Score=32.79 Aligned_cols=29 Identities=14% Similarity=0.202 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 270 NFQFQLIAHQEERDAISSKIEVSQAHLEL 298 (435)
Q Consensus 270 ~~q~qL~~~~ee~~sl~~q~~~~~~qLdk 298 (435)
+|+.+++..-++.+++.+-++.+....+|
T Consensus 659 dFk~Elq~~~~~~~~L~~~iET~~~~~~K 687 (741)
T KOG4460|consen 659 DFKKELQLIPDQLRHLGNAIETVTMKKDK 687 (741)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 45555555666666666666666655554
No 271
>PLN02678 seryl-tRNA synthetase
Probab=71.54 E-value=38 Score=36.66 Aligned_cols=73 Identities=12% Similarity=0.272 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 013864 215 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEV 291 (435)
Q Consensus 215 l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~~eE~~~w~e~n~~q~qL~~~~ee~~sl~~q~~~ 291 (435)
...++.++.++.+++..+++.|..++.++.+++..+....+..+ ..-.+...+..++..++++++.++.++..
T Consensus 31 ~id~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~----~l~~~~~~Lk~ei~~le~~~~~~~~~l~~ 103 (448)
T PLN02678 31 LVDEVIALDKEWRQRQFELDSLRKEFNKLNKEVAKLKIAKEDAT----ELIAETKELKKEITEKEAEVQEAKAALDA 103 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677788889999999999999999999998876532221111 12223344444555555555555555443
No 272
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=71.49 E-value=1.3e+02 Score=31.09 Aligned_cols=82 Identities=13% Similarity=0.244 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 216 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAH 295 (435)
Q Consensus 216 ~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~~eE~~~w~e~n~~q~qL~~~~ee~~sl~~q~~~~~~q 295 (435)
.++...+..+-..+..++.+|-.+-.+.-.+|..+-.+...+...=..|..++-.+....-++.++.+.+.+.|.-....
T Consensus 164 ~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~k~ 243 (294)
T COG1340 164 KAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEKK 243 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555555555555555555555555555555566666666655555555555555555544443
Q ss_pred HH
Q 013864 296 LE 297 (435)
Q Consensus 296 Ld 297 (435)
|-
T Consensus 244 ik 245 (294)
T COG1340 244 IK 245 (294)
T ss_pred HH
Confidence 33
No 273
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=71.47 E-value=1.3e+02 Score=35.28 Aligned_cols=10 Identities=20% Similarity=0.066 Sum_probs=4.2
Q ss_pred HHHHHHHHHH
Q 013864 402 TLFLSCLKDF 411 (435)
Q Consensus 402 vaFLdCL~Q~ 411 (435)
..-|+.+.++
T Consensus 602 t~~lel~~~k 611 (1118)
T KOG1029|consen 602 TKALELIGEK 611 (1118)
T ss_pred HHHHHHHhhh
Confidence 3444444443
No 274
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=71.38 E-value=1.3e+02 Score=32.88 Aligned_cols=45 Identities=11% Similarity=0.211 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cccCCCceeeeecCC
Q 013864 272 QFQLIAHQEERDAISSKIEVSQAHLELLKR-TNVLNDAFPIWHDGE 316 (435)
Q Consensus 272 q~qL~~~~ee~~sl~~q~~~~~~qLdkLrk-tNV~Nd~F~I~hdG~ 316 (435)
+.+..-++.+|+..+.|+..|..--+||+| .+-+=-+||.-|...
T Consensus 346 E~E~q~~~kkrqnaekql~~Ake~~eklkKKrssv~gtl~vahgss 391 (575)
T KOG4403|consen 346 EVEVQYYNKKRQNAEKQLKEAKEMAEKLKKKRSSVFGTLHVAHGSS 391 (575)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhcchheeeeeccccc
Confidence 445555667888888999999999999975 455557888888654
No 275
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=71.25 E-value=1.1e+02 Score=38.54 Aligned_cols=21 Identities=19% Similarity=0.441 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 013864 180 KLDKEVDDVTRDIEAYEACLQ 200 (435)
Q Consensus 180 ~Ld~qle~~~~E~d~Y~~fL~ 200 (435)
.+.+++++...+++....-+.
T Consensus 63 ~l~q~~~~~~~q~~~~~~e~s 83 (1822)
T KOG4674|consen 63 RLEQRLSDLSRQAKLLRNELS 83 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 355556665555555544443
No 276
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=71.17 E-value=13 Score=39.14 Aligned_cols=41 Identities=17% Similarity=0.184 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCceeeeecC
Q 013864 275 LIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDG 315 (435)
Q Consensus 275 L~~~~ee~~sl~~q~~~~~~qLdkLrktNV~Nd~F~I~hdG 315 (435)
+.++++++.+++.++..+..-++.=...-++..++-|.+..
T Consensus 275 ~~~~~~q~~~~~k~~~~~~~~~~~~~~~~~la~~l~~~~g~ 315 (406)
T PF02388_consen 275 LKELEEQLASLEKRIEEAEELIAEYGDEIPLAGALFIYYGD 315 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-SEEEEEEEEEEEETT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcceEEEEEEEEECC
Confidence 33444455555555555555555555556788888887765
No 277
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=70.89 E-value=98 Score=29.45 Aligned_cols=46 Identities=20% Similarity=0.219 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 250 LELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAH 295 (435)
Q Consensus 250 le~e~~~L~~eE~~~w~e~n~~q~qL~~~~ee~~sl~~q~~~~~~q 295 (435)
++.+...++..=.++=.....++.++..++.++..+..+......+
T Consensus 96 ~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar 141 (221)
T PF04012_consen 96 LEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKAR 141 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444444433
No 278
>PF07061 Swi5: Swi5; InterPro: IPR010760 This entry represents Swi5 and is involved in meiotic DNA repair synthesis and meiotic joint molecule formation []. It is known to interact with Swi2, Rhp51 and Swi6 [].
Probab=70.87 E-value=16 Score=30.73 Aligned_cols=10 Identities=20% Similarity=0.637 Sum_probs=7.3
Q ss_pred HHHHHHhHHH
Q 013864 263 RYWQEFNNFQ 272 (435)
Q Consensus 263 ~~w~e~n~~q 272 (435)
+..++||+.+
T Consensus 43 ~lLheYNeiK 52 (83)
T PF07061_consen 43 KLLHEYNEIK 52 (83)
T ss_pred HHHHHHhHHH
Confidence 5667888876
No 279
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=70.77 E-value=2e+02 Score=33.05 Aligned_cols=74 Identities=16% Similarity=0.080 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 013864 229 LEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRT 302 (435)
Q Consensus 229 L~~eL~~lE~e~~~l~~el~~le~e~~~L~~eE~~~w~e~n~~q~qL~~~~ee~~sl~~q~~~~~~qLdkLrkt 302 (435)
+.+++..+..-.+.......++......|...-+..-..+..++.+..+...+++...-+..+++..+.+|++.
T Consensus 543 l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~k 616 (698)
T KOG0978|consen 543 LIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRK 616 (698)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444333333333333333333444444444444555555666666666666665555556666666666553
No 280
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=70.75 E-value=56 Score=26.56 Aligned_cols=32 Identities=25% Similarity=0.253 Sum_probs=15.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013864 269 NNFQFQLIAHQEERDAISSKIEVSQAHLELLK 300 (435)
Q Consensus 269 n~~q~qL~~~~ee~~sl~~q~~~~~~qLdkLr 300 (435)
+.+-.++...-.+...+...++....+|+.++
T Consensus 36 d~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 36 DSAERQLGDAYEENNKLKEENEALRKELEELR 67 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33344444444444445555555555555443
No 281
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=70.33 E-value=2.1e+02 Score=32.95 Aligned_cols=68 Identities=19% Similarity=0.303 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 180 KLDKEVDDVTRDIEAYEACLQRLEGEARD-VLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAEL 247 (435)
Q Consensus 180 ~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~-~~~ee~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el 247 (435)
.+..++..+.++++.|....+.+.+.... ..+.++...++..-+..-.+++.+++.|..+..+..+.+
T Consensus 423 rl~~~l~~~tk~reqlk~lV~~~~k~~~e~e~s~~~~~~~i~~~k~~~e~le~~~kdL~s~L~~~~q~l 491 (716)
T KOG4593|consen 423 RLAEELPQVTKEREQLKGLVQKVDKHSLEMEASMEELYREITGQKKRLEKLEHELKDLQSQLSSREQSL 491 (716)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666666666666555443321 112233333333333333344444444444444433333
No 282
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=70.29 E-value=1.3e+02 Score=32.08 Aligned_cols=43 Identities=19% Similarity=0.298 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 013864 233 IEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQ 279 (435)
Q Consensus 233 L~~lE~e~~~l~~el~~le~e~~~L~~eE~~~w~e~n~~q~qL~~~~ 279 (435)
++.++++.+.+.+++..++.+...+.+.+ ..++.+++++...+
T Consensus 344 ~~~l~~~~~~L~~~~~~l~~~~~~~~~~~----~~l~~L~Re~~~~r 386 (458)
T COG3206 344 LALLEQQEAALEKELAQLKGRLSKLPKLQ----VQLRELEREAEAAR 386 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchHhh----hHHHHHHHHHHHHH
Confidence 44455555555555555555555554444 24444544443333
No 283
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=70.24 E-value=57 Score=28.00 Aligned_cols=37 Identities=24% Similarity=0.283 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 219 KLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSK 255 (435)
Q Consensus 219 ~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~ 255 (435)
..-++.....+..+++.++++...+.+++..++..+.
T Consensus 89 ~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~ 125 (129)
T cd00890 89 IEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQ 125 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555556666666666666665555555433
No 284
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=70.00 E-value=90 Score=35.18 Aligned_cols=111 Identities=15% Similarity=0.176 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 174 MRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELK 253 (435)
Q Consensus 174 ~d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e 253 (435)
++.+.+.|.+++..++... ....+.. + .....|.....+..+|+++++......+.+|..+...
T Consensus 3 ad~~~~~L~~eL~~le~~n--i~~l~~s-~-------------~~v~~l~~~ld~a~~e~d~le~~l~~y~~~L~~~~~d 66 (701)
T PF09763_consen 3 ADAFEERLSKELSALEAAN--IHSLLES-E-------------KQVNSLMEYLDEALAECDELESWLSLYDVELNSVRDD 66 (701)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHh-h-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888888874322 2222221 0 1112233333444445555555555555555555444
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 013864 254 SKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNV 304 (435)
Q Consensus 254 ~~~L~~eE~~~w~e~n~~q~qL~~~~ee~~sl~~q~~~~~~qLdkLrktNV 304 (435)
++.++.+....-.+ + .+...+.++++.+..++.....+|+.|+..++
T Consensus 67 i~~IE~qn~~Lqvq-~---~N~k~L~~eL~~Ll~~l~i~~~~l~~L~~~~l 113 (701)
T PF09763_consen 67 IEYIESQNNGLQVQ-S---ANQKLLLNELENLLDTLSIPEEHLEALRNASL 113 (701)
T ss_pred HHHHHhhcCchhhH-H---HHHHHHHHHHHHHHHhcCCCHHHHHHHhcCCC
Confidence 44443333221111 1 11233456777788888888888888887655
No 285
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=70.00 E-value=80 Score=28.06 Aligned_cols=6 Identities=50% Similarity=0.579 Sum_probs=2.1
Q ss_pred HHHHHH
Q 013864 237 EKQNAE 242 (435)
Q Consensus 237 E~e~~~ 242 (435)
+.+.+.
T Consensus 50 ~~q~~s 55 (107)
T PF09304_consen 50 QAQNAS 55 (107)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 286
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=69.52 E-value=1.4e+02 Score=30.76 Aligned_cols=21 Identities=33% Similarity=0.292 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 013864 275 LIAHQEERDAISSKIEVSQAH 295 (435)
Q Consensus 275 L~~~~ee~~sl~~q~~~~~~q 295 (435)
+.++++++..+...++....+
T Consensus 227 l~e~~~~l~~l~~~I~~~~~~ 247 (312)
T smart00787 227 LEELEEELQELESKIEDLTNK 247 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444443333333
No 287
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=69.39 E-value=1.1e+02 Score=33.76 Aligned_cols=33 Identities=15% Similarity=0.397 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHh
Q 013864 171 LECMRVLSDKLDKEVDDVTRDIEA-----YEACLQRLE 203 (435)
Q Consensus 171 ~eC~d~Lle~Ld~qle~~~~E~d~-----Y~~fL~~L~ 203 (435)
.|=....+..|.+++++++.|... |..|...+.
T Consensus 9 ~edl~~~I~~L~~~i~~~k~eV~~~I~~~y~df~~~~~ 46 (593)
T PF06248_consen 9 KEDLRKSISRLSRRIEELKEEVHSMINKKYSDFSPSLQ 46 (593)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556667777777777666543 566665443
No 288
>PRK06800 fliH flagellar assembly protein H; Validated
Probab=69.29 E-value=70 Score=31.27 Aligned_cols=7 Identities=14% Similarity=0.188 Sum_probs=2.6
Q ss_pred HHHHhhc
Q 013864 350 HTMCQYF 356 (435)
Q Consensus 350 ~tla~kl 356 (435)
.-+.++|
T Consensus 139 t~viQ~L 145 (228)
T PRK06800 139 TGIVQTL 145 (228)
T ss_pred HHHHHHc
Confidence 3333333
No 289
>PF13514 AAA_27: AAA domain
Probab=69.16 E-value=2.5e+02 Score=33.60 Aligned_cols=27 Identities=19% Similarity=0.420 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013864 178 SDKLDKEVDDVTRDIEAYEACLQRLEG 204 (435)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~fL~~L~~ 204 (435)
+..+..+++..+++++.|..-+..|-.
T Consensus 745 ~~~~~~ri~~~~~~~~~f~~~~~~L~~ 771 (1111)
T PF13514_consen 745 IRELRRRIEQMEADLAAFEEQVAALAE 771 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888999998887766653
No 290
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=68.90 E-value=18 Score=30.75 Aligned_cols=24 Identities=29% Similarity=0.559 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcc
Q 013864 280 EERDAISSKIEVSQAHLELLKRTN 303 (435)
Q Consensus 280 ee~~sl~~q~~~~~~qLdkLrktN 303 (435)
+|..++..++..-..+|..|++-|
T Consensus 43 ~E~~~l~~~l~~~E~eL~~LrkEN 66 (85)
T PF15188_consen 43 KELNELKEKLENNEKELKLLRKEN 66 (85)
T ss_pred HHHHHHHHHhhccHHHHHHHHHhh
Confidence 455556666666666666776655
No 291
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=68.89 E-value=62 Score=26.31 Aligned_cols=18 Identities=22% Similarity=0.263 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 013864 273 FQLIAHQEERDAISSKIE 290 (435)
Q Consensus 273 ~qL~~~~ee~~sl~~q~~ 290 (435)
.+...+.+|.+.+..+++
T Consensus 47 ~e~~~Lk~E~e~L~~el~ 64 (69)
T PF14197_consen 47 EENNKLKEENEALRKELE 64 (69)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333334444444443333
No 292
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.88 E-value=66 Score=34.82 Aligned_cols=47 Identities=26% Similarity=0.338 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 212 EADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (435)
Q Consensus 212 ee~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~ 258 (435)
..+|..++++-.+.+++|..=.--+|++.+++.+.+.+.+..+.+|.
T Consensus 136 ~~~Lenem~ka~Ed~eKlrelv~pmekeI~elk~kl~~aE~~i~El~ 182 (542)
T KOG0993|consen 136 QLDLENEMDKAKEDEEKLRELVTPMEKEINELKKKLAKAEQRIDELS 182 (542)
T ss_pred hhhhHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHH
Confidence 46677888888888888877777778888888877777766555554
No 293
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=68.84 E-value=2.3e+02 Score=34.30 Aligned_cols=41 Identities=12% Similarity=0.131 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCce
Q 013864 269 NNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAF 309 (435)
Q Consensus 269 n~~q~qL~~~~ee~~sl~~q~~~~~~qLdkLrktNV~Nd~F 309 (435)
|.+..+..+..+..+.+...+...+.|++.|+-+.++...+
T Consensus 282 n~l~~~~~~~~~~l~~~~q~~~~i~eQi~~l~~S~~Lg~~L 322 (1109)
T PRK10929 282 DLIASQQRQAASQTLQVRQALNTLREQSQWLGVSNALGEAL 322 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHH
Confidence 33334444444444555555555566777777777776555
No 294
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=68.67 E-value=92 Score=28.24 Aligned_cols=7 Identities=29% Similarity=0.368 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 013864 252 LKSKRFK 258 (435)
Q Consensus 252 ~e~~~L~ 258 (435)
..+..+.
T Consensus 73 e~~~kl~ 79 (126)
T PF09403_consen 73 EKIEKLK 79 (126)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 295
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=68.39 E-value=1.2e+02 Score=29.34 Aligned_cols=50 Identities=12% Similarity=0.185 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 246 ELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAH 295 (435)
Q Consensus 246 el~~le~e~~~L~~eE~~~w~e~n~~q~qL~~~~ee~~sl~~q~~~~~~q 295 (435)
.+..++.+...+...-.++-.....++.++.++...+..+.++...++.+
T Consensus 100 ~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~ 149 (219)
T TIGR02977 100 LAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSR 149 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444455555555555555555555555555554
No 296
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.28 E-value=85 Score=36.66 Aligned_cols=56 Identities=23% Similarity=0.252 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 013864 221 KIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLI 276 (435)
Q Consensus 221 ~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~~eE~~~w~e~n~~q~qL~ 276 (435)
+++...+++..+++.+.+...++..|.++++++...+..+-.+.-++++.++.||.
T Consensus 661 kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg 716 (970)
T KOG0946|consen 661 KYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLG 716 (970)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34555566666666666666677777777777766666655566667777766655
No 297
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=68.16 E-value=17 Score=39.54 Aligned_cols=13 Identities=38% Similarity=0.823 Sum_probs=9.9
Q ss_pred eeEEecCCcceee
Q 013864 364 IKIIPMGSYPRIM 376 (435)
Q Consensus 364 YkLvPmGS~SkI~ 376 (435)
.--+|-|||.+-.
T Consensus 211 ~~YiPsgSf~~av 223 (475)
T PRK13729 211 LPYIPSGSFAKAM 223 (475)
T ss_pred CceeCCCCeEEEE
Confidence 4478999998765
No 298
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=68.15 E-value=69 Score=26.63 Aligned_cols=31 Identities=26% Similarity=0.457 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 236 TEKQNAEVNAELKELELKSKRFKELEERYWQE 267 (435)
Q Consensus 236 lE~e~~~l~~el~~le~e~~~L~~eE~~~w~e 267 (435)
|..|...+....++|+.+-+.|++ |..-|++
T Consensus 37 l~~e~q~~q~~reaL~~eneqlk~-e~~~WQe 67 (79)
T COG3074 37 LSQEVQNAQHQREALERENEQLKE-EQNGWQE 67 (79)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 333333333344444444444433 3345554
No 299
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=68.14 E-value=74 Score=27.78 Aligned_cols=27 Identities=26% Similarity=0.441 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013864 177 LSDKLDKEVDDVTRDIEAYEACLQRLE 203 (435)
Q Consensus 177 Lle~Ld~qle~~~~E~d~Y~~fL~~L~ 203 (435)
.++.+.++++.+...+..|...++.|+
T Consensus 14 ~i~~l~~~~~~l~~~~~e~~~~~~~l~ 40 (129)
T cd00584 14 EIEELQQELARLNEAIAEYEQAKETLE 40 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777778888888877666554
No 300
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=67.78 E-value=2.3e+02 Score=32.58 Aligned_cols=82 Identities=18% Similarity=0.309 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 013864 223 EEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRT 302 (435)
Q Consensus 223 e~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~~eE~~~w~e~n~~q~qL~~~~ee~~sl~~q~~~~~~qLdkLrkt 302 (435)
.+|...+...++...+.-.++...+..|+.+.......=++.-..|++....+.-+...+.-++..+......|.++++-
T Consensus 544 ~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k~~ 623 (698)
T KOG0978|consen 544 IKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERLKKE 623 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 44445555555555555555555555555554444433334444555555555555555555555556666666666655
Q ss_pred cc
Q 013864 303 NV 304 (435)
Q Consensus 303 NV 304 (435)
++
T Consensus 624 ~~ 625 (698)
T KOG0978|consen 624 ES 625 (698)
T ss_pred cc
Confidence 44
No 301
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=67.76 E-value=1.3e+02 Score=29.56 Aligned_cols=69 Identities=19% Similarity=0.296 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013864 233 IEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 301 (435)
Q Consensus 233 L~~lE~e~~~l~~el~~le~e~~~L~~eE~~~w~e~n~~q~qL~~~~ee~~sl~~q~~~~~~qLdkLrk 301 (435)
.+.-+..+.++..+++-+....+.|..-++.|....-.+..++..+.+.+.....+-+++.....+|.+
T Consensus 104 aE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE~aERsVakLek 172 (205)
T KOG1003|consen 104 AEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAETRAEFAERRVAKLEK 172 (205)
T ss_pred HHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcc
Confidence 333344445555555555555555555555566666666666666666555555555555555555444
No 302
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=67.75 E-value=91 Score=35.52 Aligned_cols=22 Identities=18% Similarity=0.185 Sum_probs=11.7
Q ss_pred HHHHHHHhhc-CCcccCCcchHH
Q 013864 151 VLKRAFEIAT-SQTQVEQPLCLE 172 (435)
Q Consensus 151 ~l~~lFdILS-s~s~IDhPLC~e 172 (435)
+.++|-+-|+ .-+.++++-|-+
T Consensus 83 taa~i~eWles~~p~~~~~s~~~ 105 (861)
T KOG1899|consen 83 TAARIAEWLESPSPSMSTVSCPE 105 (861)
T ss_pred HHHHHHHHHhccCCCCCCccCCc
Confidence 3345555553 345666666654
No 303
>PF13514 AAA_27: AAA domain
Probab=67.72 E-value=2.4e+02 Score=33.72 Aligned_cols=23 Identities=13% Similarity=0.079 Sum_probs=13.9
Q ss_pred CCCChhHHHHHHHHHHHHHHHHH
Q 013864 331 IPVEWDEINAAWGQACLLLHTMC 353 (435)
Q Consensus 331 ~~V~W~EINAAwGQ~~LLL~tla 353 (435)
..|+..+...+----+.|-.-||
T Consensus 1019 ~~~~~~~LS~GT~dQLYLALRLA 1041 (1111)
T PF13514_consen 1019 ERVPVEELSRGTRDQLYLALRLA 1041 (1111)
T ss_pred eEeeHHHhCHHHHHHHHHHHHHH
Confidence 46777777776655444444444
No 304
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=67.45 E-value=1.4e+02 Score=29.87 Aligned_cols=56 Identities=11% Similarity=0.414 Sum_probs=28.4
Q ss_pred ccchHHHHHHHHHhhcC-CcccCCcc-----hHH-HHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q 013864 145 FHSTITVLKRAFEIATS-QTQVEQPL-----CLE-CMRVLSDKL---DKEVDDVTRDIEAYEACLQ 200 (435)
Q Consensus 145 ls~~i~~l~~lFdILSs-~s~IDhPL-----C~e-C~d~Lle~L---d~qle~~~~E~d~Y~~fL~ 200 (435)
++--....+.+|..+|+ ...+.-|| |.| |+..+-+++ ...+.+..+|.-.|..-++
T Consensus 87 y~~~~~~fgk~~~lws~~E~~L~~~L~~~a~~~d~~~~~~~~~~~~l~~~f~~~Lkeyv~y~~slK 152 (243)
T cd07666 87 YFEELKEYGPIYTLWSASEEELADSLKGMASCIDRCCKATDKRMKGLSEQLLPVIHEYVLYSETLM 152 (243)
T ss_pred HHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445566777777763 55576666 333 333444433 3344444444444444443
No 305
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=67.39 E-value=21 Score=36.61 Aligned_cols=42 Identities=29% Similarity=0.349 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 223 EEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERY 264 (435)
Q Consensus 223 e~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~~eE~~~ 264 (435)
+.|-+.|+-|++.||+..++|..+..+++.|+..|++.=.++
T Consensus 247 Rae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~ 288 (294)
T KOG4571|consen 247 RAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLILEV 288 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566788888888888888888888888888777654433
No 306
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=67.29 E-value=58 Score=26.13 Aligned_cols=53 Identities=23% Similarity=0.382 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 214 DFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQ 266 (435)
Q Consensus 214 ~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~~eE~~~w~ 266 (435)
++.+.+..++...+.+...+..+|+..+..+.++..+...+.+++.--.=.|+
T Consensus 3 ~i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~kW~~r 55 (71)
T PF10779_consen 3 DIKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSNTKWIWR 55 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666677777777777777777777777666666554443443
No 307
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=67.29 E-value=2.1e+02 Score=31.99 Aligned_cols=26 Identities=19% Similarity=0.376 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 174 MRVLSDKLDKEVDDVTRDIEAYEACL 199 (435)
Q Consensus 174 ~d~Lle~Ld~qle~~~~E~d~Y~~fL 199 (435)
-..+-+.++.-++..++|..++..-.
T Consensus 283 l~~I~e~ie~lYd~lE~EveA~~~V~ 308 (570)
T COG4477 283 LGLIQEKIESLYDLLEREVEAKNVVE 308 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666666677777765543
No 308
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=67.13 E-value=1.2e+02 Score=29.81 Aligned_cols=63 Identities=17% Similarity=0.126 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCceeeeecCCeeeeccccCCCCCCCCCChhHHHHHHHHHH
Q 013864 275 LIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQAC 346 (435)
Q Consensus 275 L~~~~ee~~sl~~q~~~~~~qLdkLrktNV~Nd~F~I~hdG~fGTINGlRLGrlp~~~V~W~EINAAwGQ~~ 346 (435)
+++.++++..+..+++....++..|.+.-= -.+.+|....+-.. .|..+--|..|-.||....
T Consensus 164 ~l~ie~~L~~v~~eIe~~~~~~~~l~~~v~-~sti~i~l~~~~~~--------~~~~~~~~~~~~~al~~~~ 226 (262)
T PF14257_consen 164 LLEIERELSRVRSEIEQLEGQLKYLDDRVD-YSTITISLYEPESI--------KPESPSFGSRFRDALKNGW 226 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-eEEEEEEEEecCCC--------CCCCCCcchHHHHHHHHHH
Confidence 334444445555555555555555544322 24555555444110 1123445666655555443
No 309
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=67.09 E-value=1.6e+02 Score=30.33 Aligned_cols=21 Identities=14% Similarity=0.526 Sum_probs=17.1
Q ss_pred CCcccccchHHHHHHHHHHHH
Q 013864 390 NLFWSTRYDKAMTLFLSCLKD 410 (435)
Q Consensus 390 ~lf~~~kFD~AMvaFLdCL~Q 410 (435)
+.+|-+||+.+-.++++.+.+
T Consensus 260 ~~~~k~k~e~~n~~l~~m~ee 280 (309)
T PF09728_consen 260 NQTWKSKWEKSNKALIEMAEE 280 (309)
T ss_pred HHHHHHHHHHHhHHHHHHHHH
Confidence 377889999999988887665
No 310
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=66.94 E-value=1.2e+02 Score=36.10 Aligned_cols=39 Identities=28% Similarity=0.407 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 221 KIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKE 259 (435)
Q Consensus 221 ~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~~ 259 (435)
++.+|.+++..|+.+|++..+.|.+++..+|..+..|++
T Consensus 400 K~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkE 438 (1243)
T KOG0971|consen 400 KLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKE 438 (1243)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555556666666666666666666655555543
No 311
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=66.74 E-value=1.5e+02 Score=29.88 Aligned_cols=31 Identities=23% Similarity=0.246 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHH-HH---HHHHHHHHHHH
Q 013864 171 LECMRVLSDKLDKEVDDV-TR---DIEAYEACLQR 201 (435)
Q Consensus 171 ~eC~d~Lle~Ld~qle~~-~~---E~d~Y~~fL~~ 201 (435)
.++.-..++.+..+|... .+ =-..|..||+.
T Consensus 150 ~~~~~~~~~~~~~~Y~~~p~Kg~ka~evL~~fl~~ 184 (297)
T PF02841_consen 150 YQLFLKELDELEKEYEQEPGKGVKAEEVLQEFLQS 184 (297)
T ss_dssp HHHHHHHHHHHHHHHHHSS---TTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHH
Confidence 455556666666666554 11 23346667665
No 312
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=66.72 E-value=44 Score=29.01 Aligned_cols=32 Identities=22% Similarity=0.419 Sum_probs=15.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 268 FNNFQFQLIAHQEERDAISSKIEVSQAHLELL 299 (435)
Q Consensus 268 ~n~~q~qL~~~~ee~~sl~~q~~~~~~qLdkL 299 (435)
++.++..+.+..-+.+.+.++++....+++.|
T Consensus 67 v~~L~l~l~el~G~~~~l~~~l~~v~~~~~lL 98 (106)
T PF10805_consen 67 VHDLQLELAELRGELKELSARLQGVSHQLDLL 98 (106)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444455555555555444443
No 313
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=66.46 E-value=18 Score=31.47 Aligned_cols=89 Identities=19% Similarity=0.138 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHH
Q 013864 212 EADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQE-FNNFQFQLIAHQEERDAISSKIE 290 (435)
Q Consensus 212 ee~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~~eE~~~w~e-~n~~q~qL~~~~ee~~sl~~q~~ 290 (435)
..+|...++-.|+|-.-|...|.++|++...+..||.+++.+.-.++. .-|-. -..-.-.-..++.++.++..|+.
T Consensus 3 ~aeLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~~~g~~d~---~~~~~~g~~~~~~~~~l~~eLk~a~~qi~ 79 (96)
T PF11365_consen 3 SAELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKYKSKYGDLDS---LAKLSEGGSPSGREAELQEELKLAREQIN 79 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc---cccCCCCCCCccccHHHHHHHHHHHHHHH
Confidence 456766777678887888889999999999999999888876544432 11100 00000011234667788888888
Q ss_pred HHHHHHHHHhhcc
Q 013864 291 VSQAHLELLKRTN 303 (435)
Q Consensus 291 ~~~~qLdkLrktN 303 (435)
..+..+-+|+--|
T Consensus 80 ~Ls~kv~eLq~EN 92 (96)
T PF11365_consen 80 ELSGKVMELQYEN 92 (96)
T ss_pred HHhhHHHHHhhcc
Confidence 8888888887665
No 314
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=66.33 E-value=40 Score=33.11 Aligned_cols=50 Identities=10% Similarity=0.121 Sum_probs=25.9
Q ss_pred HHHHHHHHhhcCCcccCCcc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 150 TVLKRAFEIATSQTQVEQPL--CLECMRVLSDKLDKEVDDVTRDIEAYEACLQ 200 (435)
Q Consensus 150 ~~l~~lFdILSs~s~IDhPL--C~eC~d~Lle~Ld~qle~~~~E~d~Y~~fL~ 200 (435)
..+....+-|.+-..|.+-- =+|=|....+ ++.+++..+.+.+.|...|+
T Consensus 105 ~~~~~~l~~l~~~g~v~~~~~~~~DvT~~y~D-~~arl~~l~~~~~rl~~ll~ 156 (262)
T PF14257_consen 105 DKFDSFLDELSELGKVTSRNISSEDVTEQYVD-LEARLKNLEAEEERLLELLE 156 (262)
T ss_pred HHHHHHHHHHhccCceeeeeccccchHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444433443322 2344555554 56666666666666666665
No 315
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=65.93 E-value=2.3e+02 Score=34.13 Aligned_cols=60 Identities=12% Similarity=0.097 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 233 IEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVS 292 (435)
Q Consensus 233 L~~lE~e~~~l~~el~~le~e~~~L~~eE~~~w~e~n~~q~qL~~~~ee~~sl~~q~~~~ 292 (435)
++.+.+.+..+..-+.+++.....+...+...-..+.....+-.+..+++..+..|+.-+
T Consensus 418 ver~~~~~~~L~~~i~s~~~~~~e~~~d~~~l~~~~~~~~~~~~e~n~eL~~~~~ql~da 477 (1141)
T KOG0018|consen 418 VERLDKRRNKLAAKITSLSRSYEELKHDLDSLESLVSSAEEEPYELNEELVEVLDQLLDA 477 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhh
Confidence 333344444444444444444444444444444444444444444444444444444333
No 316
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=65.92 E-value=1.3e+02 Score=28.79 Aligned_cols=55 Identities=31% Similarity=0.391 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhHHHHH
Q 013864 220 LKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF-KELEERYWQEFNNFQFQ 274 (435)
Q Consensus 220 ~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L-~~eE~~~w~e~n~~q~q 274 (435)
..++.+...|..++++|+.+..++......++....+. ..+++.+-.+...++.+
T Consensus 123 ~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~ 178 (189)
T PF10211_consen 123 QELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQ 178 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666667777777777777777666666555543 33344444444444443
No 317
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=65.84 E-value=1.7e+02 Score=34.36 Aligned_cols=10 Identities=40% Similarity=0.796 Sum_probs=6.3
Q ss_pred HHHHHHHHHh
Q 013864 194 AYEACLQRLE 203 (435)
Q Consensus 194 ~Y~~fL~~L~ 203 (435)
.|+.+++++.
T Consensus 904 ~~e~~~~~l~ 913 (1259)
T KOG0163|consen 904 NYEKLVKRLD 913 (1259)
T ss_pred HHHHHHHHhh
Confidence 4666666665
No 318
>TIGR02473 flagell_FliJ flagellar export protein FliJ. Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Probab=65.75 E-value=91 Score=27.10 Aligned_cols=89 Identities=13% Similarity=0.219 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 179 DKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADF---LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSK 255 (435)
Q Consensus 179 e~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l---~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~ 255 (435)
+....+++.+...+..|..-+...... .++...+ ..=+..|..........+..++.+.+.....+.+...+.+
T Consensus 30 ~~~~~~l~~l~~~~~~~~~~~~~~~~~---g~~~~~l~~~~~f~~~l~~~i~~q~~~l~~~~~~~e~~r~~l~~a~~~~k 106 (141)
T TIGR02473 30 ERLETQLQQLIKYREEYEQQALEKVGA---GTSALELSNYQRFIRQLDQRIQQQQQELALLQQEVEAKRERLLEARRELK 106 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555554443322211 1233332 2334556777777778888888888888888888888888
Q ss_pred HHHHHHHHHHHHHhH
Q 013864 256 RFKELEERYWQEFNN 270 (435)
Q Consensus 256 ~L~~eE~~~w~e~n~ 270 (435)
.++.+.++...++..
T Consensus 107 ~lekL~ek~~~~~~~ 121 (141)
T TIGR02473 107 ALEKLKEKKQKEYRA 121 (141)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888777665555544
No 319
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=65.73 E-value=57 Score=34.81 Aligned_cols=36 Identities=25% Similarity=0.513 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 216 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELE 251 (435)
Q Consensus 216 ~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le 251 (435)
..++.++.++.+++..+++.|.+++.++.+++..+.
T Consensus 27 vd~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~ 62 (425)
T PRK05431 27 VDELLELDEERRELQTELEELQAERNALSKEIGQAK 62 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345667788888888999999999988888887743
No 320
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=65.63 E-value=2.5e+02 Score=33.81 Aligned_cols=29 Identities=24% Similarity=0.472 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 223 EEEERKLEAAIEETEKQNAEVNAELKELE 251 (435)
Q Consensus 223 e~EE~~L~~eL~~lE~e~~~l~~el~~le 251 (435)
.++..+++..|..-.++.+.+..++.+++
T Consensus 482 ~~~~~~~k~~L~~~~~el~~~~ee~~~~~ 510 (1041)
T KOG0243|consen 482 KEEKEKLKSKLQNKNKELESLKEELQQAK 510 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444443333
No 321
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=65.60 E-value=61 Score=27.65 Aligned_cols=80 Identities=23% Similarity=0.403 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh---c-ccc---------------cCCC--------------HHHHHHHHHHHHH
Q 013864 178 SDKLDKEVDDVTRDIEAYEACLQRLE---G-EAR---------------DVLS--------------EADFLKEKLKIEE 224 (435)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~fL~~L~---~-~~~---------------~~~~--------------ee~l~~e~~~Le~ 224 (435)
++.++.+++.++..++.|....+.|+ . ... .... +..+.+...-+..
T Consensus 5 l~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~lvplg~~~~v~g~i~~~~~vlV~lG~~~~vE~s~~eA~~~l~~ 84 (120)
T PF02996_consen 5 LENLQQQIEQLEEQIEEYEEAKETLEELKKEKKEHEILVPLGSGVFVPGKIPDTDKVLVSLGAGYYVEMSLEEAIEFLKK 84 (120)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--TT-EEEEEECTTEEEEEE-SSTTEEEEEEETTEEEEEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeeecCCCCeEEEEEeCCCCEEEEEeeCCeEEEecHHHHHHHHHH
Confidence 56788899999999999988776665 2 100 0000 0112334444555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 225 EERKLEAAIEETEKQNAEVNAELKELELKSKRF 257 (435)
Q Consensus 225 EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L 257 (435)
....+.+.++.++++...+.+++..++..+.++
T Consensus 85 r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~ 117 (120)
T PF02996_consen 85 RIKELEEQLEKLEKELAELQAQIEQLEQTLQQL 117 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666666666666554444
No 322
>PLN03188 kinesin-12 family protein; Provisional
Probab=65.55 E-value=2.9e+02 Score=34.00 Aligned_cols=18 Identities=44% Similarity=0.536 Sum_probs=11.4
Q ss_pred HHHHHHHHHHhH-HHHHHH
Q 013864 259 ELEERYWQEFNN-FQFQLI 276 (435)
Q Consensus 259 ~eE~~~w~e~n~-~q~qL~ 276 (435)
+-|.+||++-|. +|-||.
T Consensus 1172 eker~~~~~enk~l~~qlr 1190 (1320)
T PLN03188 1172 EKERRYLRDENKSLQAQLR 1190 (1320)
T ss_pred HHHHHHHHHhhHHHHHHHh
Confidence 557788888775 444443
No 323
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=65.35 E-value=52 Score=37.39 Aligned_cols=40 Identities=30% Similarity=0.321 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 222 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELE 261 (435)
Q Consensus 222 Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~~eE 261 (435)
|+++...+...|+++.+++.+-.+|+.++..+++.+-.+.
T Consensus 101 Lke~l~~l~~~le~lr~qk~eR~~ef~el~~qie~l~~~l 140 (660)
T KOG4302|consen 101 LKEQLESLKPYLEGLRKQKDERRAEFKELYHQIEKLCEEL 140 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445555555555555555555555555555555544433
No 324
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=65.21 E-value=49 Score=31.06 Aligned_cols=8 Identities=13% Similarity=0.127 Sum_probs=3.6
Q ss_pred HHHHHHHH
Q 013864 189 TRDIEAYE 196 (435)
Q Consensus 189 ~~E~d~Y~ 196 (435)
-.+|+.|.
T Consensus 99 raQRN~YI 106 (192)
T PF05529_consen 99 RAQRNMYI 106 (192)
T ss_pred HHHHhHHH
Confidence 33444444
No 325
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=65.21 E-value=62 Score=34.46 Aligned_cols=36 Identities=22% Similarity=0.467 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 216 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELE 251 (435)
Q Consensus 216 ~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le 251 (435)
..++..+.++.+++..+++.|..++..+.+++..+.
T Consensus 29 vd~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~ 64 (418)
T TIGR00414 29 LEKLIALDDERKKLLSEIEELQAKRNELSKQIGKAK 64 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456677888888888899999988888888887643
No 326
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=65.06 E-value=1.3e+02 Score=32.18 Aligned_cols=36 Identities=33% Similarity=0.342 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 226 ERKLEAAIEETEKQNAEVNAELKELELKSKRFKELE 261 (435)
Q Consensus 226 E~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~~eE 261 (435)
|...++.|+++..|++.+.++++..+...+-|+++-
T Consensus 240 eaqvek~i~EfdiEre~LRAel~ree~r~K~lKeEm 275 (561)
T KOG1103|consen 240 EAQVEKLIEEFDIEREFLRAELEREEKRQKMLKEEM 275 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666666666666666665555554433
No 327
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=64.70 E-value=1.6e+02 Score=31.93 Aligned_cols=14 Identities=21% Similarity=0.399 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHhhc
Q 013864 343 GQACLLLHTMCQYF 356 (435)
Q Consensus 343 GQ~~LLL~tla~kl 356 (435)
|..+=|..+|+..+
T Consensus 206 ~~k~~~~~tLaGs~ 219 (459)
T KOG0288|consen 206 GEKSELISTLAGSL 219 (459)
T ss_pred cchhhhhhhhhccC
Confidence 44455566666654
No 328
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=64.27 E-value=65 Score=33.60 Aligned_cols=25 Identities=16% Similarity=0.278 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 178 SDKLDKEVDDVTRDIEAYEACLQRL 202 (435)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~fL~~L 202 (435)
++.++.+-.++.+.+..|+.--+-|
T Consensus 2 Vdd~QN~N~EL~kQiEIcqEENkiL 26 (351)
T PF07058_consen 2 VDDVQNQNQELMKQIEICQEENKIL 26 (351)
T ss_pred chhhhhhcHHHHHHHHHHHHHHHHH
Confidence 4556666666667777776633333
No 329
>PF13166 AAA_13: AAA domain
Probab=64.24 E-value=2.4e+02 Score=31.42 Aligned_cols=24 Identities=17% Similarity=0.112 Sum_probs=15.3
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHHHh
Q 013864 326 GRLPKIPVEWDEINAAWGQACLLLHTMCQ 354 (435)
Q Consensus 326 Grlp~~~V~W~EINAAwGQ~~LLL~tla~ 354 (435)
|..|....+.-|=|+ +-|+++||.
T Consensus 494 ~~~~~~~LSEGEk~~-----iAf~yFla~ 517 (712)
T PF13166_consen 494 GSKPAKILSEGEKRA-----IAFAYFLAE 517 (712)
T ss_pred CCcccCccCHHHHHH-----HHHHHHHHH
Confidence 455667778888753 455666664
No 330
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=64.13 E-value=2e+02 Score=31.71 Aligned_cols=11 Identities=9% Similarity=0.054 Sum_probs=5.1
Q ss_pred HHHHHHHHHHH
Q 013864 401 MTLFLSCLKDF 411 (435)
Q Consensus 401 MvaFLdCL~Q~ 411 (435)
...|.+.|.++
T Consensus 480 ~~~~~~~l~~l 490 (563)
T TIGR00634 480 AQAIAKKLAQL 490 (563)
T ss_pred HHHHHHHHHHH
Confidence 33444555544
No 331
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=63.97 E-value=1.7e+02 Score=29.66 Aligned_cols=43 Identities=16% Similarity=0.269 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 215 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 257 (435)
Q Consensus 215 l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L 257 (435)
+.....+|.+=+++...++..|+++..++++.|....++..-|
T Consensus 65 l~~ak~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L 107 (258)
T PF15397_consen 65 LQQAKAELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFL 107 (258)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555556666777888888888888777777776655
No 332
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=63.79 E-value=3.1e+02 Score=33.83 Aligned_cols=24 Identities=38% Similarity=0.336 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 213 ADFLKEKLKIEEEERKLEAAIEET 236 (435)
Q Consensus 213 e~l~~e~~~Le~EE~~L~~eL~~l 236 (435)
.++.+|..++..+..++.++++.+
T Consensus 822 ~E~~~Ek~~~~~~~~~~rke~E~~ 845 (1294)
T KOG0962|consen 822 DELRKEKSKKQESLDKLRKEIECL 845 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444443
No 333
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=63.78 E-value=48 Score=32.37 Aligned_cols=20 Identities=20% Similarity=0.295 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 013864 281 ERDAISSKIEVSQAHLELLK 300 (435)
Q Consensus 281 e~~sl~~q~~~~~~qLdkLr 300 (435)
+.+.+.+++..++.+|+.++
T Consensus 110 ~~~~~~~~l~~~~~~l~~~~ 129 (322)
T TIGR01730 110 AVEAAQADLEAAKASLASAQ 129 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444555555544
No 334
>PF09798 LCD1: DNA damage checkpoint protein; InterPro: IPR018622 This is a family of proteins which regulate checkpoint kinases. In Schizosaccharomyces pombe (Fission yeast) this protein is called Rad26 and in Saccharomyces cerevisiae (Baker's yeast) it is called LCD1 [].
Probab=63.59 E-value=40 Score=38.27 Aligned_cols=60 Identities=17% Similarity=0.305 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 229 LEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQA 294 (435)
Q Consensus 229 L~~eL~~lE~e~~~l~~el~~le~e~~~L~~eE~~~w~e~n~~q~qL~~~~ee~~sl~~q~~~~~~ 294 (435)
|+.+|+.|++|+++ |+..+ ....++..+..-++.+.++..+..++||++-+.+....+.+
T Consensus 2 LRdkL~~Lq~ek~~---E~~~l---~~~~~~lk~~~~~el~~Lk~~vqkLEDEKKFL~nE~r~~s~ 61 (654)
T PF09798_consen 2 LRDKLELLQQEKQK---ERQAL---KSSVEELKESHEEELNKLKSEVQKLEDEKKFLNNELRSLSS 61 (654)
T ss_pred hHHHHHHHHHHHHH---HHHHH---HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45566667666544 22222 22344444455667888889999999999988887666554
No 335
>PF07303 Occludin_ELL: Occludin homology domain; InterPro: IPR010844 This represents a conserved region approximately 100 residues long within eukaryotic occludin proteins and the RNA polymerase II elongation factor ELL. Occludin is an integral membrane protein that localises to tight junctions [], while ELL is an elongation factor that can increase the catalytic rate of RNA polymerase II transcription by suppressing transient pausing by polymerase at multiple sites along the DNA []. This shared domain is thought to mediate protein interactions [].; PDB: 1WPA_A 3G7C_A 1XAW_A.
Probab=63.38 E-value=46 Score=28.88 Aligned_cols=71 Identities=24% Similarity=0.353 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013864 226 ERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 301 (435)
Q Consensus 226 E~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~~eE~~~w~e~n~~q~qL~~~~ee~~sl~~q~~~~~~qLdkLrk 301 (435)
=.+|-+++..+-+...+|+.+|..+..-..+-+..+ +.+.+|+.++..=-.++++ ..+..+..+.|..+++
T Consensus 24 Yk~L~~~v~~v~~~f~~L~~~l~~l~~~s~ey~~i~-~I~~eY~k~Kk~~p~y~~~----K~Rc~yL~~KL~HIK~ 94 (101)
T PF07303_consen 24 YKELHAEVDAVSRRFQELDSELKRLPPGSQEYKRIA-QILQEYNKKKKRDPNYQEK----KKRCEYLHNKLSHIKQ 94 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS-TTSHHHHHHH----HHHHHHHHTSHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHH-HHHHHHHHHHhcCccHHHH----HHHHHHHHHHHHHHHH
Confidence 345566666666777777777777765555666777 7888888885322233332 3344555555555443
No 336
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=63.31 E-value=1.3e+02 Score=29.14 Aligned_cols=34 Identities=24% Similarity=0.297 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 218 EKLKIEEEERKLEAAIEETEKQNAEVNAELKELE 251 (435)
Q Consensus 218 e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le 251 (435)
++..|..+..+|.+.+..|.+++.-+++||+.|.
T Consensus 80 el~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~ 113 (201)
T KOG4603|consen 80 ELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELS 113 (201)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556666666666666666666666654
No 337
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=63.03 E-value=2.4e+02 Score=30.95 Aligned_cols=10 Identities=30% Similarity=0.169 Sum_probs=5.9
Q ss_pred cccchHHHHH
Q 013864 394 STRYDKAMTL 403 (435)
Q Consensus 394 ~~kFD~AMva 403 (435)
..++|.|...
T Consensus 536 ~gdL~~A~~~ 545 (582)
T PF09731_consen 536 RGDLDKAARE 545 (582)
T ss_pred CCCHHHHHHH
Confidence 4567766543
No 338
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=62.77 E-value=1.8e+02 Score=29.46 Aligned_cols=42 Identities=24% Similarity=0.347 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 215 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKR 256 (435)
Q Consensus 215 l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~ 256 (435)
|..|..+++...++|.++|+-+..+..+|+.-+-.+|.+.+.
T Consensus 118 Ly~e~~~vk~~qkrLdq~L~~I~sqQ~ELE~~L~~lE~k~~~ 159 (254)
T KOG2196|consen 118 LYNEVVKVKLDQKRLDQELEFILSQQQELEDLLDPLETKLEL 159 (254)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344555556666666666666666555555555555544433
No 339
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.43 E-value=2.1e+02 Score=33.68 Aligned_cols=24 Identities=21% Similarity=0.254 Sum_probs=14.2
Q ss_pred ccchHHHHH--HHHHhhcCCcccCCc
Q 013864 145 FHSTITVLK--RAFEIATSQTQVEQP 168 (435)
Q Consensus 145 ls~~i~~l~--~lFdILSs~s~IDhP 168 (435)
|-+++..+. .+|.++|-+.+...|
T Consensus 584 f~srL~~lsr~e~ysra~~kqq~~l~ 609 (970)
T KOG0946|consen 584 FISRLQRLSRHELYSRASMKQQPQLK 609 (970)
T ss_pred HHHHHHHhhHhHHHHHHhhccCccCC
Confidence 445555544 367888777666333
No 340
>PF05130 FlgN: FlgN protein; InterPro: IPR007809 Flagella synthesis protein FlgN is an export chaperone involved in flagellar synthesis []. This entry represents a FlgN-like domain, consisting of a 4 long helices bundle, where the last helix is shorter than the three others.; GO: 0009296 flagellum assembly, 0019861 flagellum; PDB: 2FUP_A 3OPC_A.
Probab=62.28 E-value=98 Score=26.28 Aligned_cols=60 Identities=30% Similarity=0.385 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 188 VTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKE 249 (435)
Q Consensus 188 ~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~ 249 (435)
+.++++.|...+.-++++..- +...+ ...+..+-.++..+..+|.++++++..+-..+..
T Consensus 10 L~~~~~~~~~L~~ll~~e~~~-l~~~d-~~~l~~~~~~k~~l~~~l~~le~~r~~~~~~~~~ 69 (143)
T PF05130_consen 10 LEEQIELLQELLELLEEEREA-LISGD-IDELEELVEEKQELLEELRELEKQRQQLLAKLGA 69 (143)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHTTH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 445666677777666544321 11112 2345566777778888888888888776665443
No 341
>PRK00106 hypothetical protein; Provisional
Probab=62.28 E-value=2.6e+02 Score=31.17 Aligned_cols=21 Identities=10% Similarity=0.295 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 013864 225 EERKLEAAIEETEKQNAEVNA 245 (435)
Q Consensus 225 EE~~L~~eL~~lE~e~~~l~~ 245 (435)
.|++|.+..+.|++....+++
T Consensus 102 rE~rL~qREE~LekRee~Lek 122 (535)
T PRK00106 102 IESRLTERATSLDRKDENLSS 122 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333344433333333333333
No 342
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=62.14 E-value=2.4e+02 Score=32.36 Aligned_cols=16 Identities=6% Similarity=0.167 Sum_probs=8.8
Q ss_pred cccchHHHHHHHHHhh
Q 013864 144 GFHSTITVLKRAFEIA 159 (435)
Q Consensus 144 ~ls~~i~~l~~lFdIL 159 (435)
+-++.+.-|..|++-+
T Consensus 15 t~~~~~~eL~~IW~~i 30 (660)
T KOG4302|consen 15 TCGNLLNELQKIWDEI 30 (660)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3444455566666655
No 343
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=62.02 E-value=1.3e+02 Score=31.00 Aligned_cols=26 Identities=23% Similarity=0.313 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Q 013864 277 AHQEERDAISSKIEVSQAHLELLKRT 302 (435)
Q Consensus 277 ~~~ee~~sl~~q~~~~~~qLdkLrkt 302 (435)
+.+.++..+.-.++.|+.-|+.|++.
T Consensus 79 ~a~~~L~~a~P~L~~A~~al~~l~k~ 104 (344)
T PF12777_consen 79 EAEEELAEAEPALEEAQEALKSLDKS 104 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCS-HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence 34555555555666666555555543
No 344
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=62.00 E-value=89 Score=33.31 Aligned_cols=28 Identities=25% Similarity=0.504 Sum_probs=19.6
Q ss_pred ccchHHHHHHHHHhhcCCcc-cCCcchHH
Q 013864 145 FHSTITVLKRAFEIATSQTQ-VEQPLCLE 172 (435)
Q Consensus 145 ls~~i~~l~~lFdILSs~s~-IDhPLC~e 172 (435)
++.-+.+|.+=|.||-.+.+ -..|.|.+
T Consensus 57 inDP~~ALqRDf~~l~Ek~D~EK~p~ct~ 85 (561)
T KOG1103|consen 57 INDPFAALQRDFAILGEKIDEEKIPQCTE 85 (561)
T ss_pred cCChHHHHHHHHHHHhccccccccceecc
Confidence 55566788899999876543 34677776
No 345
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=61.97 E-value=1.1e+02 Score=34.61 Aligned_cols=48 Identities=19% Similarity=0.301 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 013864 226 ERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQF 273 (435)
Q Consensus 226 E~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~~eE~~~w~e~n~~q~ 273 (435)
..+|.++++.|..+..+++++|+..+.+....+..-++.|.+..+.+.
T Consensus 81 r~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~ 128 (632)
T PF14817_consen 81 RRELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRH 128 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555555444556655555543
No 346
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=61.78 E-value=2.6e+02 Score=33.11 Aligned_cols=39 Identities=21% Similarity=0.426 Sum_probs=26.4
Q ss_pred eeeccccCCCCCCCCCChhHHHHHHHHHHHHHHHHHhhcC
Q 013864 318 GTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMCQYFR 357 (435)
Q Consensus 318 GTINGlRLGrlp~~~V~W~EINAAwGQ~~LLL~tla~kl~ 357 (435)
||.-.+|.-+ -+..-.-.|+--.|--+.+....+.+.+.
T Consensus 811 ~~~a~lr~~~-~slk~~l~e~ar~Wasl~~~~~vl~e~l~ 849 (984)
T COG4717 811 GTVAELRQRR-ESLKEDLEEKARKWASLRLAVQVLEEALR 849 (984)
T ss_pred ChHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666543 12344667888888888888888887663
No 347
>PF15372 DUF4600: Domain of unknown function (DUF4600)
Probab=61.72 E-value=1.3e+02 Score=27.54 Aligned_cols=39 Identities=21% Similarity=0.405 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 227 RKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEF 268 (435)
Q Consensus 227 ~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~~eE~~~w~e~ 268 (435)
..|..-|++||+++..|..+++..+- +|+++.+.|.+..
T Consensus 54 ~~l~~llkqLEkeK~~Le~qlk~~e~---rLeQEsKAyhk~n 92 (129)
T PF15372_consen 54 ESLNQLLKQLEKEKRSLENQLKDYEW---RLEQESKAYHKAN 92 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHh
Confidence 56677788899999999998888875 4777777666543
No 348
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=61.45 E-value=1.8e+02 Score=29.04 Aligned_cols=20 Identities=25% Similarity=0.272 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 013864 278 HQEERDAISSKIEVSQAHLE 297 (435)
Q Consensus 278 ~~ee~~sl~~q~~~~~~qLd 297 (435)
.+.+..++.+++..++.+|+
T Consensus 184 ~~~~~~~~~~~l~~a~~~l~ 203 (327)
T TIGR02971 184 AQAEVKSALEAVQQAEALLE 203 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34455566666666666554
No 349
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=61.44 E-value=83 Score=26.63 Aligned_cols=6 Identities=33% Similarity=0.567 Sum_probs=2.1
Q ss_pred HHHHHH
Q 013864 182 DKEVDD 187 (435)
Q Consensus 182 d~qle~ 187 (435)
+.+...
T Consensus 35 d~~~r~ 40 (108)
T PF02403_consen 35 DQERRE 40 (108)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 350
>PRK10698 phage shock protein PspA; Provisional
Probab=61.35 E-value=1.7e+02 Score=28.64 Aligned_cols=22 Identities=9% Similarity=0.271 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 013864 173 CMRVLSDKLDKEVDDVTRDIEA 194 (435)
Q Consensus 173 C~d~Lle~Ld~qle~~~~E~d~ 194 (435)
=.+.++..|...+..+......
T Consensus 28 ~l~q~i~em~~~l~~~r~alA~ 49 (222)
T PRK10698 28 LVRLMIQEMEDTLVEVRSTSAR 49 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555333333
No 351
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=61.33 E-value=28 Score=30.30 Aligned_cols=31 Identities=13% Similarity=0.316 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 221 KIEEEERKLEAAIEETEKQNAEVNAELKELE 251 (435)
Q Consensus 221 ~Le~EE~~L~~eL~~lE~e~~~l~~el~~le 251 (435)
+++++...+.+++++++.+.++|..++..|+
T Consensus 31 ~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~ 61 (105)
T PRK00888 31 RVNDQVAAQQQTNAKLKARNDQLFAEIDDLK 61 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444555555555555555555555554444
No 352
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=61.30 E-value=50 Score=27.78 Aligned_cols=42 Identities=14% Similarity=0.326 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 226 ERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEF 268 (435)
Q Consensus 226 E~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~~eE~~~w~e~ 268 (435)
.++|.+++.+|+..+..|-..+...+.|-+.|+.+. +|.++|
T Consensus 18 k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN-~~Lq~Y 59 (80)
T PF10224_consen 18 KEELIQEILELQDSLEALSDRVEEVKEENEKLESEN-EYLQQY 59 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 466788888888888888888888888877776644 455555
No 353
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=61.02 E-value=52 Score=36.70 Aligned_cols=23 Identities=35% Similarity=0.407 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 013864 231 AAIEETEKQNAEVNAELKELELK 253 (435)
Q Consensus 231 ~eL~~lE~e~~~l~~el~~le~e 253 (435)
++++.+|++.+++++++.+++.+
T Consensus 563 ~~~~~~e~~i~~le~~~~~l~~~ 585 (638)
T PRK10636 563 KEIARLEKEMEKLNAQLAQAEEK 585 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444433
No 354
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=60.52 E-value=1.8e+02 Score=30.15 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHH--HHHHHHHHHHH
Q 013864 237 EKQNAEVNAELK--ELELKSKRFKE 259 (435)
Q Consensus 237 E~e~~~l~~el~--~le~e~~~L~~ 259 (435)
|.|+.++++||. +..+|+++|++
T Consensus 107 EEECHRVEAQLALKEARkEIkQLkQ 131 (305)
T PF15290_consen 107 EEECHRVEAQLALKEARKEIKQLKQ 131 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666543 33445555543
No 355
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=60.43 E-value=2.7e+02 Score=30.72 Aligned_cols=37 Identities=30% Similarity=0.387 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 229 LEAAIEETEKQNAEVNAELKELELKSKRFKELEERYW 265 (435)
Q Consensus 229 L~~eL~~lE~e~~~l~~el~~le~e~~~L~~eE~~~w 265 (435)
|..+.+.|++...+|++..++++.+.+.+++.++++.
T Consensus 92 Lekr~e~Lekre~~Le~ke~~L~~re~eLee~~~e~~ 128 (514)
T TIGR03319 92 LDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELE 128 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333344333334333344444443333
No 356
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=60.26 E-value=2.2e+02 Score=29.76 Aligned_cols=47 Identities=21% Similarity=0.351 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCCCceeeeecCCeeeeccccCCC
Q 013864 280 EERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGR 327 (435)
Q Consensus 280 ee~~sl~~q~~~~~~qLdkLrktNV~Nd~F~I~hdG~fGTINGlRLGr 327 (435)
+++..+++++..++.++..++..--++.+-.=-+||....++ +..|.
T Consensus 227 ~~~~~~~~~l~~~~~~l~~~~~~l~~~~~i~AP~dG~V~~~~-~~~G~ 273 (421)
T TIGR03794 227 KELETVEARIKEARYEIEELENKLNLNTRIVSQHSGRVIELN-YTPGQ 273 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEcCCCeEEEEee-CCCCC
Confidence 445566677777777777766554333333334566665555 35554
No 357
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=60.15 E-value=1.1e+02 Score=30.39 Aligned_cols=32 Identities=19% Similarity=0.306 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 222 IEEEERKLEAAIEETEKQNAEVNAELKELELK 253 (435)
Q Consensus 222 Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e 253 (435)
.++|...+..+++.+|.++.+|+..+.+++.+
T Consensus 183 ae~ek~~~~~~~k~le~~k~~Le~~ia~~k~K 214 (259)
T KOG4001|consen 183 AENEKTRATTEWKVLEDKKKELELKIAQLKKK 214 (259)
T ss_pred HhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 35555566666666666666666666655543
No 358
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=59.86 E-value=1.1e+02 Score=26.12 Aligned_cols=77 Identities=25% Similarity=0.374 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHhccc--------------ccCCCH-HHHHHHHH-HHHHHHHHHHHHHHHHH
Q 013864 176 VLSDKLDKEVDDVTRDIEAYEAC--LQRLEGEA--------------RDVLSE-ADFLKEKL-KIEEEERKLEAAIEETE 237 (435)
Q Consensus 176 ~Lle~Ld~qle~~~~E~d~Y~~f--L~~L~~~~--------------~~~~~e-e~l~~e~~-~Le~EE~~L~~eL~~lE 237 (435)
.|-+...++++..-+|++....+ |++|..+. .+.++. +.+..-+- .++.+..+|...|.+++
T Consensus 14 ~l~~~~~~Ef~~I~~Er~v~~kLneLd~Li~eA~~r~~~~~~~~~~~~~~l~P~~~i~a~l~~~~~~~~~~L~~~l~~l~ 93 (109)
T PF03980_consen 14 FLEENCKKEFEEILEERDVVEKLNELDKLIEEAKERKNSGEREKPVWRHSLTPEEDIRAHLAPYKKKEREQLNARLQELE 93 (109)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHhccccCCCCCCCCCChHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 34455667788888888877663 34442211 011232 33333332 35777788899999999
Q ss_pred HHHHHHHHHHHHHHH
Q 013864 238 KQNAEVNAELKELEL 252 (435)
Q Consensus 238 ~e~~~l~~el~~le~ 252 (435)
++...+.+++.+++.
T Consensus 94 ~eN~~L~~~i~~~r~ 108 (109)
T PF03980_consen 94 EENEALAEEIQEQRK 108 (109)
T ss_pred HHHHHHHHHHHHhhc
Confidence 999888888877654
No 359
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=59.85 E-value=2.2e+02 Score=29.50 Aligned_cols=18 Identities=39% Similarity=0.503 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 013864 225 EERKLEAAIEETEKQNAE 242 (435)
Q Consensus 225 EE~~L~~eL~~lE~e~~~ 242 (435)
+|.++.+.|.+|++++..
T Consensus 132 ~E~~lvq~I~~L~k~le~ 149 (294)
T COG1340 132 EERELVQKIKELRKELED 149 (294)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455556666555555544
No 360
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=59.78 E-value=1.1e+02 Score=33.83 Aligned_cols=23 Identities=4% Similarity=0.174 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 013864 181 LDKEVDDVTRDIEAYEACLQRLE 203 (435)
Q Consensus 181 Ld~qle~~~~E~d~Y~~fL~~L~ 203 (435)
|.+++.--..+.+.|+..|+.+.
T Consensus 339 L~~R~K~Q~q~~~~~r~ri~~i~ 361 (508)
T KOG3091|consen 339 LRQRLKVQDQEVKQHRIRINAIG 361 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444455555555543
No 361
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=59.54 E-value=2e+02 Score=28.84 Aligned_cols=62 Identities=23% Similarity=0.307 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Q 013864 238 KQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAI-------SSKIEVSQAHLELL 299 (435)
Q Consensus 238 ~e~~~l~~el~~le~e~~~L~~eE~~~w~e~n~~q~qL~~~~ee~~sl-------~~q~~~~~~qLdkL 299 (435)
.....++..+..|+.+...--.--+-|+.....|..+|.+.......+ +..|..+...|+.+
T Consensus 149 ~~~~~ae~~v~~Lek~lkr~I~KSrPYfe~K~~~~~~l~~~k~~v~~Le~~v~~aK~~Y~~ALrnLE~I 217 (239)
T PF05276_consen 149 RIYNEAEQRVQQLEKKLKRAIKKSRPYFELKAKFNQQLEEQKEKVEELEAKVKQAKSRYSEALRNLEQI 217 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555554444433333445555555555555554444444 44455555555554
No 362
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=59.36 E-value=76 Score=30.91 Aligned_cols=83 Identities=13% Similarity=0.266 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH-HHHHHHHHH----------HHhHHHHHHHHHHHHHH
Q 013864 219 KLKIEEEERKLEAAIEETEKQNAE----VNAELKELELKSKRF-KELEERYWQ----------EFNNFQFQLIAHQEERD 283 (435)
Q Consensus 219 ~~~Le~EE~~L~~eL~~lE~e~~~----l~~el~~le~e~~~L-~~eE~~~w~----------e~n~~q~qL~~~~ee~~ 283 (435)
.-.|+.|..+|+.+|..++++-.. -.....-++.|.+.| +-.++++-. ......-++...+++.+
T Consensus 98 evrLkrELa~Le~~l~~~~~~~~~~~~~~~~~~~lvk~e~EqLL~YK~~ql~~~~~~~~~~~~~l~~v~~Dl~~ie~QV~ 177 (195)
T PF12761_consen 98 EVRLKRELAELEEKLSKVEQAAESRRSDTDSKPALVKREFEQLLDYKERQLRELEEGRSKSGKNLKSVREDLDTIEEQVD 177 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHHHH
Confidence 344666666666666666655543 111112223332222 212222221 24556677777888888
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 013864 284 AISSKIEVSQAHLELLKR 301 (435)
Q Consensus 284 sl~~q~~~~~~qLdkLrk 301 (435)
.|+.-+..=+..|+.|+.
T Consensus 178 ~Le~~L~~k~~eL~~L~q 195 (195)
T PF12761_consen 178 GLESHLSSKKQELQQLRQ 195 (195)
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 888888777888888863
No 363
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=59.35 E-value=71 Score=35.24 Aligned_cols=82 Identities=15% Similarity=0.250 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 172 ECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELE 251 (435)
Q Consensus 172 eC~d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le 251 (435)
-|+..|-+.=+.|+..+.+..+.|.+-.+++..+. ..++.++.|.+.+...|+-.|+...++....-++.+.+|
T Consensus 17 r~~~~l~~g~e~ef~rl~k~fed~~ek~~r~~ae~------~~~~~~L~Ka~tk~~~ldvklkha~~~vda~ik~rr~ae 90 (604)
T KOG3564|consen 17 RDIEILGEGNEDEFIRLRKDFEDFEEKWKRTDAEL------GKYKDLLAKAETKRSALDVKLKHARNQVDAEIKRRRRAE 90 (604)
T ss_pred HHHHHhcCccHHHHHHHHHHHHHHHHHHhhhhHHH------HHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHh
Confidence 46666666666677777776666666555544322 223334444555555555555555554444434444444
Q ss_pred HHHHHHHH
Q 013864 252 LKSKRFKE 259 (435)
Q Consensus 252 ~e~~~L~~ 259 (435)
.+.+.++.
T Consensus 91 ~d~~~~E~ 98 (604)
T KOG3564|consen 91 ADCEKLET 98 (604)
T ss_pred hhHHHHHH
Confidence 44444433
No 364
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=59.25 E-value=1.8e+02 Score=28.35 Aligned_cols=56 Identities=14% Similarity=0.204 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 013864 223 EEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAH 278 (435)
Q Consensus 223 e~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~~eE~~~w~e~n~~q~qL~~~ 278 (435)
+....+|...|.-...+..++.........|...|+.+-...-...+.++.++..+
T Consensus 125 ~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~L 180 (192)
T PF11180_consen 125 EARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQL 180 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555556555666666666666666666666655554444444444444333
No 365
>PLN02372 violaxanthin de-epoxidase
Probab=59.08 E-value=1.4e+02 Score=32.43 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHH
Q 013864 249 ELELKSKRFKELEERYWQEFNNFQ 272 (435)
Q Consensus 249 ~le~e~~~L~~eE~~~w~e~n~~q 272 (435)
.+++..++|++.|..|.++.++-+
T Consensus 407 ~~~~~~~~l~~~~~~f~~~lskee 430 (455)
T PLN02372 407 ALEEGLKELEQDEENFLKELSKEE 430 (455)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHH
Confidence 344455555555555555444433
No 366
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=59.02 E-value=2.2e+02 Score=29.39 Aligned_cols=75 Identities=21% Similarity=0.340 Sum_probs=49.5
Q ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 222 IEEEERKLEA--AIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELL 299 (435)
Q Consensus 222 Le~EE~~L~~--eL~~lE~e~~~l~~el~~le~e~~~L~~eE~~~w~e~n~~q~qL~~~~ee~~sl~~q~~~~~~qLdkL 299 (435)
+|+|--+.++ .|++..+|..+|.+-++..+.-+.+.+.=-++|+.+.|--...| .++..-++.|++-. |
T Consensus 106 IEEECHRVEAQLALKEARkEIkQLkQvieTmrssL~ekDkGiQKYFvDINiQN~KL-------EsLLqsMElAq~g~--~ 176 (305)
T PF15290_consen 106 IEEECHRVEAQLALKEARKEIKQLKQVIETMRSSLAEKDKGIQKYFVDINIQNKKL-------ESLLQSMELAQSGS--L 176 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHhhhhhhHhHH-------HHHHHHHHHHHhcc--c
Confidence 3444444444 35677777777777777777777667777778999988765554 44555667777765 6
Q ss_pred hhcccC
Q 013864 300 KRTNVL 305 (435)
Q Consensus 300 rktNV~ 305 (435)
|.-+.+
T Consensus 177 rde~~l 182 (305)
T PF15290_consen 177 RDEGCL 182 (305)
T ss_pred cccCCc
Confidence 655544
No 367
>PRK12765 flagellar capping protein; Provisional
Probab=58.84 E-value=47 Score=37.11 Aligned_cols=57 Identities=5% Similarity=0.071 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 233 IEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVS 292 (435)
Q Consensus 233 L~~lE~e~~~l~~el~~le~e~~~L~~eE~~~w~e~n~~q~qL~~~~ee~~sl~~q~~~~ 292 (435)
-+-+.++...|+.+++.++ ++++..+++|++.|+.+..-+..+......|..++..+
T Consensus 534 ~~~l~~~~~~l~~~~~~~~---~rl~~~~~r~~~qf~alD~~i~~l~~t~s~l~~~~~~~ 590 (595)
T PRK12765 534 DESLTNEIKSLTTSKESTQ---ELIDTKYETMANKWLQYDSIIAKLEQQFSTLKNMINAA 590 (595)
T ss_pred hhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3344444444444444444 35788888999999999887777666666666555543
No 368
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=58.69 E-value=2.8e+02 Score=30.39 Aligned_cols=11 Identities=18% Similarity=0.166 Sum_probs=5.5
Q ss_pred HHHHHHHHHhh
Q 013864 149 ITVLKRAFEIA 159 (435)
Q Consensus 149 i~~l~~lFdIL 159 (435)
+..+..+|+-+
T Consensus 225 ~~el~~~~~~l 235 (582)
T PF09731_consen 225 VQELVSIFNDL 235 (582)
T ss_pred HHHHHHhccch
Confidence 34455555444
No 369
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.64 E-value=3.1e+02 Score=30.92 Aligned_cols=19 Identities=26% Similarity=0.385 Sum_probs=9.6
Q ss_pred HHHHHhhcCCcccCCcchH
Q 013864 153 KRAFEIATSQTQVEQPLCL 171 (435)
Q Consensus 153 ~~lFdILSs~s~IDhPLC~ 171 (435)
.+.|.|-|+...---..|.
T Consensus 214 nq~Le~~ssS~~g~~~~~~ 232 (654)
T KOG4809|consen 214 NQPLEINSSSAKGLGYTCL 232 (654)
T ss_pred cchhhhhhhcccCCCchHH
Confidence 3455666555554444454
No 370
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=58.59 E-value=41 Score=37.50 Aligned_cols=34 Identities=44% Similarity=0.593 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 223 EEEERKLEAAIEETEKQNAEVNAELKELELKSKR 256 (435)
Q Consensus 223 e~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~ 256 (435)
+.+-.++.+++.++.++.+++++++++++.+.+.
T Consensus 92 ~~~~~~~~~~i~~l~~~~~~L~~~~~~l~~~~~~ 125 (646)
T PRK05771 92 EEELEKIEKEIKELEEEISELENEIKELEQEIER 125 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555544333
No 371
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=58.59 E-value=1e+02 Score=25.24 Aligned_cols=86 Identities=17% Similarity=0.323 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 178 SDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADF---LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKS 254 (435)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l---~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~ 254 (435)
+.....++..+...+..|..-+.... . .++..++ ..-+..|+.....+..++..++.+.+.....+.+...+.
T Consensus 14 ~~~~~~~l~~L~~~~~~~~~~~~~~~-~---~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a~~~~ 89 (123)
T PF02050_consen 14 LQEAEEQLEQLQQERQEYQEQLSESQ-Q---GVSVAQLRNYQRYISALEQAIQQQQQELERLEQEVEQAREELQEARRER 89 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT------S---GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc-C---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555543332221 1 1222222 334556777778888888888888888888888887777
Q ss_pred HHHHHHHHHHHHH
Q 013864 255 KRFKELEERYWQE 267 (435)
Q Consensus 255 ~~L~~eE~~~w~e 267 (435)
+.++.+.++--..
T Consensus 90 k~~e~L~e~~~~~ 102 (123)
T PF02050_consen 90 KKLEKLKERRREE 102 (123)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777666543333
No 372
>PF14723 SSFA2_C: Sperm-specific antigen 2 C-terminus
Probab=58.56 E-value=1.3e+02 Score=29.04 Aligned_cols=20 Identities=20% Similarity=0.514 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 013864 184 EVDDVTRDIEAYEACLQRLE 203 (435)
Q Consensus 184 qle~~~~E~d~Y~~fL~~L~ 203 (435)
+++...+=++.|..-+..|+
T Consensus 106 Elq~mr~~ln~FR~qm~dlE 125 (179)
T PF14723_consen 106 ELQQMRRSLNSFREQMMDLE 125 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444555666665554
No 373
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=58.46 E-value=2.3e+02 Score=32.91 Aligned_cols=38 Identities=13% Similarity=0.400 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 221 KIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (435)
Q Consensus 221 ~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~ 258 (435)
.|++|++.+.+.+.++.++++.+...+++|..+++.|.
T Consensus 220 ~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 220 RLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLR 257 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 35666666666777777776666666666666555554
No 374
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=58.41 E-value=1.5e+02 Score=27.01 Aligned_cols=56 Identities=11% Similarity=0.213 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013864 245 AELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLK 300 (435)
Q Consensus 245 ~el~~le~e~~~L~~eE~~~w~e~n~~q~qL~~~~ee~~sl~~q~~~~~~qLdkLr 300 (435)
+.|..+..++++..+.-+..-.+.+..+.++..+..+.+++.....-....|+.|+
T Consensus 68 qRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie 123 (126)
T PF07889_consen 68 QRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIE 123 (126)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444444444455566666777777777777777666666666664
No 375
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=58.34 E-value=1.1e+02 Score=31.00 Aligned_cols=14 Identities=14% Similarity=-0.154 Sum_probs=5.2
Q ss_pred chHHHHHHHHHHHH
Q 013864 397 YDKAMTLFLSCLKD 410 (435)
Q Consensus 397 FD~AMvaFLdCL~Q 410 (435)
||..--+||...-+
T Consensus 213 ~~Is~~~~lt~~~~ 226 (292)
T KOG4005|consen 213 FDISRLEELTESLL 226 (292)
T ss_pred hhHHHHHHHHHHHH
Confidence 33333333333333
No 376
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=58.31 E-value=2.4e+02 Score=31.19 Aligned_cols=36 Identities=17% Similarity=0.194 Sum_probs=23.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013864 168 PLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLE 203 (435)
Q Consensus 168 PLC~eC~d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~ 203 (435)
|+=.-=..-|.++++-|.+++...+.....-.+++.
T Consensus 330 PVpvvGF~dL~~R~K~Q~q~~~~~r~ri~~i~e~v~ 365 (508)
T KOG3091|consen 330 PVPVVGFEDLRQRLKVQDQEVKQHRIRINAIGERVT 365 (508)
T ss_pred ceeccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444567788888888888777766655554443
No 377
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.15 E-value=1.1e+02 Score=25.50 Aligned_cols=28 Identities=18% Similarity=0.381 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 232 AIEETEKQNAEVNAELKELELKSKRFKE 259 (435)
Q Consensus 232 eL~~lE~e~~~l~~el~~le~e~~~L~~ 259 (435)
|+++|..+...+.+|...++...++|..
T Consensus 26 EieELKEknn~l~~e~q~~q~~reaL~~ 53 (79)
T COG3074 26 EIEELKEKNNSLSQEVQNAQHQREALER 53 (79)
T ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHHHH
Confidence 3444444444444444444433334433
No 378
>PRK14160 heat shock protein GrpE; Provisional
Probab=58.12 E-value=1.9e+02 Score=28.38 Aligned_cols=48 Identities=29% Similarity=0.365 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 013864 226 ERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQF 273 (435)
Q Consensus 226 E~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~~eE~~~w~e~n~~q~ 273 (435)
+..-+..+..++++...+.+++..++.+...+++.-.+.-.+|-+|++
T Consensus 49 ~~~~~~~~~~l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RK 96 (211)
T PRK14160 49 EESNEVKIEELKDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRK 96 (211)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344455555555556666666665555554433333444444443
No 379
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=58.07 E-value=1.2e+02 Score=25.84 Aligned_cols=64 Identities=16% Similarity=0.224 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 183 KEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELEL 252 (435)
Q Consensus 183 ~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~ 252 (435)
.++..++.+++....-+.....+ -..+...+.+|..|..+..++.-++++....+..+++.|..
T Consensus 3 ~EL~~~~~a~~~~~~~~~~k~~~------~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~ 66 (96)
T PF08647_consen 3 TELVSMEQAFKELSEQADKKVKE------LTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNT 66 (96)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 44555555555544444333221 12233444556666666666666666666666666666543
No 380
>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the 116kDa subunit (or subunit a) and subunit I found in the V0 or A0 complex of V- or A-ATPases, respectively. The 116kDa subunit is a transmembrane glycoprotein required for the assembly and proton transport activity of the ATPase complex. Several isoforms of the 116kDa subunit exist, providing a potential role in the differential targeting and regulation of the V-ATPase for specific organelles []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 2RPW_X 2NVJ_A 2JTW_A 3RRK_A.
Probab=57.93 E-value=7.3 Score=44.15 Aligned_cols=24 Identities=29% Similarity=0.142 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHhhcccCCCceee
Q 013864 288 KIEVSQAHLELLKRTNVLNDAFPI 311 (435)
Q Consensus 288 q~~~~~~qLdkLrktNV~Nd~F~I 311 (435)
+++..+..|.+.-+.|+|-..+.|
T Consensus 154 ~~~~f~~~l~r~~~~N~fi~~~~I 177 (759)
T PF01496_consen 154 KIESFERILWRATRGNIFIRFSEI 177 (759)
T ss_dssp HHHHHHHHHHHHHTT-----S---
T ss_pred hHHHHHHHHHHhccCCeEEEEEee
Confidence 455666778888889988766644
No 381
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=57.84 E-value=1.9e+02 Score=28.26 Aligned_cols=78 Identities=17% Similarity=0.230 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 222 IEEEERKLEAAIEETEKQNAEVNAELKELELKSK--------RFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQ 293 (435)
Q Consensus 222 Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~--------~L~~eE~~~w~e~n~~q~qL~~~~ee~~sl~~q~~~~~ 293 (435)
+...|..|.+.+++.+.......+....|+.-.. .+++....+=.+.-.++..|...+-...|++.++++-.
T Consensus 109 ~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~hAeekL~~ANeei~~v~~~~~~e~~aLqa~lkk~e~~~~SLe~~LeQK~ 188 (207)
T PF05010_consen 109 YKKNEETLKKCIEEYEERLKKEEQRYQALKAHAEEKLEKANEEIAQVRSKHQAELLALQASLKKEEMKVQSLEESLEQKT 188 (207)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555544444444433333322111 11222223333333444444444455555555555444
Q ss_pred HHHHHH
Q 013864 294 AHLELL 299 (435)
Q Consensus 294 ~qLdkL 299 (435)
...+-|
T Consensus 189 kEn~EL 194 (207)
T PF05010_consen 189 KENEEL 194 (207)
T ss_pred HHHHHH
Confidence 443333
No 382
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=57.84 E-value=39 Score=25.58 Aligned_cols=32 Identities=28% Similarity=0.512 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 222 IEEEERKLEAAIEETEKQNAEVNAELKELELK 253 (435)
Q Consensus 222 Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e 253 (435)
-...+..|..++..|+.+...|.+++..|+.|
T Consensus 23 kk~~~~~le~~~~~L~~en~~L~~~i~~L~~E 54 (54)
T PF07716_consen 23 KKQREEELEQEVQELEEENEQLRQEIAQLERE 54 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34555666677777777777777766666543
No 383
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=57.75 E-value=1.8e+02 Score=30.57 Aligned_cols=24 Identities=8% Similarity=0.037 Sum_probs=13.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHH
Q 013864 263 RYWQEFNNFQFQLIAHQEERDAIS 286 (435)
Q Consensus 263 ~~w~e~n~~q~qL~~~~ee~~sl~ 286 (435)
+|-...|.-+..+.++++.+.++.
T Consensus 184 KF~~vLNeKK~KIR~lq~~L~~~~ 207 (342)
T PF06632_consen 184 KFVLVLNEKKAKIRELQRLLASAK 207 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHhh
Confidence 455666666666655555554443
No 384
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=57.58 E-value=48 Score=26.12 Aligned_cols=34 Identities=24% Similarity=0.489 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 221 KIEEEERKLEAAIEETEKQNAEVNAELKELELKS 254 (435)
Q Consensus 221 ~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~ 254 (435)
+||.+-.++...+..+++|.+++..++++++.-.
T Consensus 4 elEn~~~~~~~~i~tvk~en~~i~~~ve~i~env 37 (55)
T PF05377_consen 4 ELENELPRIESSINTVKKENEEISESVEKIEENV 37 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555666666666666666666655555444
No 385
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=57.53 E-value=2.5e+02 Score=29.53 Aligned_cols=29 Identities=28% Similarity=0.444 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 013864 274 QLIAHQEERDAISSKIEVSQAHLELLKRT 302 (435)
Q Consensus 274 qL~~~~ee~~sl~~q~~~~~~qLdkLrkt 302 (435)
+...+.+-...|..++..+...+..|.++
T Consensus 325 Ev~~l~~~i~~L~~~L~~a~~~l~~L~~~ 353 (384)
T PF03148_consen 325 EVKELRESIEALQEKLDEAEASLQKLERT 353 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555556666666666666666543
No 386
>PLN02320 seryl-tRNA synthetase
Probab=57.27 E-value=84 Score=34.66 Aligned_cols=33 Identities=18% Similarity=0.243 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 217 KEKLKIEEEERKLEAAIEETEKQNAEVNAELKE 249 (435)
Q Consensus 217 ~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~ 249 (435)
.++..+.++.+++..++++|..++.++.+++..
T Consensus 93 d~l~~ld~~~r~~~~~~~~lr~ern~~sk~i~~ 125 (502)
T PLN02320 93 ELVLELYENMLALQKEVERLRAERNAVANKMKG 125 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345556666667777777777777777776654
No 387
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=57.19 E-value=3.5 Score=46.42 Aligned_cols=21 Identities=24% Similarity=0.477 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 013864 181 LDKEVDDVTRDIEAYEACLQR 201 (435)
Q Consensus 181 Ld~qle~~~~E~d~Y~~fL~~ 201 (435)
++-+...++.|+..|..+++.
T Consensus 310 lq~e~~~Le~el~sW~sl~~~ 330 (722)
T PF05557_consen 310 LQLENEKLEDELNSWESLLQD 330 (722)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 444555566677777776664
No 388
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=56.95 E-value=1.4e+02 Score=26.46 Aligned_cols=22 Identities=18% Similarity=0.223 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 013864 277 AHQEERDAISSKIEVSQAHLEL 298 (435)
Q Consensus 277 ~~~ee~~sl~~q~~~~~~qLdk 298 (435)
.++++...+..+++.....+.+
T Consensus 112 ~l~~~l~~~~~~~~~~~~~l~~ 133 (140)
T PRK03947 112 KLEEALQKLASRIAQLAQELQQ 133 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 389
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=56.86 E-value=1.6e+02 Score=27.05 Aligned_cols=36 Identities=19% Similarity=0.398 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccCCCceeeeecCCe
Q 013864 279 QEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEF 317 (435)
Q Consensus 279 ~ee~~sl~~q~~~~~~qLdkLrktNV~Nd~F~I~hdG~f 317 (435)
..++..+.+....-+.++++|++-| ++|.=|.|.+.
T Consensus 67 r~~~~~~~~~l~~re~~i~rL~~EN---e~lR~Wa~t~L 102 (135)
T TIGR03495 67 RQQLAQARALLAQREQRIERLKREN---EDLRRWADTPL 102 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcC---HHHHHHhcCCC
Confidence 4455556666677777788887764 56666776653
No 390
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=56.79 E-value=2.4e+02 Score=29.27 Aligned_cols=28 Identities=21% Similarity=0.430 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 174 MRVLSDKLDKEVDDVTRDIEAYEACLQR 201 (435)
Q Consensus 174 ~d~Lle~Ld~qle~~~~E~d~Y~~fL~~ 201 (435)
....++.++++++.++..++.|...+..
T Consensus 86 q~~~i~~l~~~i~~l~~~i~~y~~~~~~ 113 (301)
T PF06120_consen 86 QKRAIEDLQKKIDSLKDQIKNYQQQLAE 113 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445667777777777777777765543
No 391
>PRK10869 recombination and repair protein; Provisional
Probab=56.77 E-value=3.1e+02 Score=30.36 Aligned_cols=12 Identities=8% Similarity=0.174 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHH
Q 013864 400 AMTLFLSCLKDF 411 (435)
Q Consensus 400 AMvaFLdCL~Q~ 411 (435)
....+.+.|.++
T Consensus 469 ~~~~v~~~l~~l 480 (553)
T PRK10869 469 TAAVVGKLLRQL 480 (553)
T ss_pred HHHHHHHHHHHH
Confidence 333455555544
No 392
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=56.63 E-value=34 Score=35.87 Aligned_cols=16 Identities=19% Similarity=0.079 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 013864 399 KAMTLFLSCLKDFAEF 414 (435)
Q Consensus 399 ~AMvaFLdCL~Q~~e~ 414 (435)
.+-.+|.++.+.+.+.
T Consensus 294 ~kRr~~~~i~~~Lr~~ 309 (370)
T PF02994_consen 294 QKRRKFNPIKKKLREK 309 (370)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHc
Confidence 4556777777776654
No 393
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=56.61 E-value=3.7e+02 Score=32.11 Aligned_cols=25 Identities=12% Similarity=0.137 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 176 VLSDKLDKEVDDVTRDIEAYEACLQ 200 (435)
Q Consensus 176 ~Lle~Ld~qle~~~~E~d~Y~~fL~ 200 (435)
.+.+.+..+..+...+.+....-+.
T Consensus 184 ~~~~~l~er~k~~~~~l~~l~~~l~ 208 (1047)
T PRK10246 184 QISAMVFEQHKSARTELEKLQAQAS 208 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 5666666666666666655555553
No 394
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=56.61 E-value=3.5e+02 Score=30.84 Aligned_cols=40 Identities=18% Similarity=0.128 Sum_probs=25.3
Q ss_pred eeeeccccCCCCCCCCCChhHHHHHHHHHH----HHHHHHHhhcCC
Q 013864 317 FGTINNFRLGRLPKIPVEWDEINAAWGQAC----LLLHTMCQYFRP 358 (435)
Q Consensus 317 fGTINGlRLGrlp~~~V~W~EINAAwGQ~~----LLL~tla~kl~~ 358 (435)
+++|=-=|.|.+.-.||.|.-|+.= +.+ .-|..|++.|+|
T Consensus 471 l~~Ll~~~~~~~~~~P~~~lSI~rl--~~~~~~~~~l~~l~~~L~f 514 (632)
T PF14817_consen 471 LNALLRRRAGGLQRDPSADLSIHRL--HAASPYGASLISLLESLGF 514 (632)
T ss_pred HHHHHhhccCCCCCCCchhhHHHHh--cccCCCCchHHHHHHhcCC
Confidence 3456666778777789999999832 332 344555555543
No 395
>PF07195 FliD_C: Flagellar hook-associated protein 2 C-terminus; InterPro: IPR010809 The flagellar hook-associated protein 2 (HAP2 or FliD) forms the distal end of the flagella, and plays a role in mucin specific adhesion of the bacteria []. This alignment covers the C-terminal region of the flagellar hook-associated protein 2.; GO: 0007155 cell adhesion, 0009288 bacterial-type flagellum
Probab=56.41 E-value=39 Score=32.86 Aligned_cols=46 Identities=20% Similarity=0.386 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 013864 229 LEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIA 277 (435)
Q Consensus 229 L~~eL~~lE~e~~~l~~el~~le~e~~~L~~eE~~~w~e~n~~q~qL~~ 277 (435)
+......++++...++.++..++. +++..|++||+.|..++.-+..
T Consensus 191 i~~~~~~l~~~~~~~~~~i~~~~~---rl~~~~~~l~~qf~~me~~i~~ 236 (239)
T PF07195_consen 191 ITSRIDSLNSQIKSLDKQIEDLEE---RLESKEERLRKQFSAMESLISQ 236 (239)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666666665 4778888999999888765443
No 396
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=55.93 E-value=46 Score=30.55 Aligned_cols=30 Identities=23% Similarity=0.502 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 222 IEEEERKLEAAIEETEKQNAEVNAELKELE 251 (435)
Q Consensus 222 Le~EE~~L~~eL~~lE~e~~~l~~el~~le 251 (435)
||.+...|.++++.|..|.+++..|+..++
T Consensus 79 LE~~k~~L~qqv~~L~~e~s~~~~E~da~k 108 (135)
T KOG4196|consen 79 LEKEKAELQQQVEKLKEENSRLRRELDAYK 108 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444333333
No 397
>KOG4796 consensus RNA polymerase II elongation factor [Transcription]
Probab=55.82 E-value=25 Score=38.95 Aligned_cols=48 Identities=27% Similarity=0.482 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhHHHHH
Q 013864 227 RKLEAAIEETEKQNAEVNAELK-ELELKSKRFKELEERYWQEFNNFQFQ 274 (435)
Q Consensus 227 ~~L~~eL~~lE~e~~~l~~el~-~le~e~~~L~~eE~~~w~e~n~~q~q 274 (435)
++|-++++.+.....+|+++|+ .+-.-..+.++.|++.|++|..++..
T Consensus 518 reLharve~vs~rF~~Lea~L~srls~gS~ey~~i~~qI~qEYeki~~d 566 (604)
T KOG4796|consen 518 RELHARVETVSRRFRQLEAQLKSRLSPGSPEYKQIEKQILQEYEKIRKD 566 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHhhcC
Confidence 3444555555555555555555 33333344588899999999999843
No 398
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=55.48 E-value=2.5e+02 Score=28.83 Aligned_cols=9 Identities=22% Similarity=0.693 Sum_probs=4.5
Q ss_pred eeeccccCC
Q 013864 318 GTINNFRLG 326 (435)
Q Consensus 318 GTINGlRLG 326 (435)
|+-|-|...
T Consensus 221 gs~~~f~~p 229 (333)
T KOG1853|consen 221 GSKEEFKMP 229 (333)
T ss_pred CchhhcCCC
Confidence 445555544
No 399
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=55.34 E-value=1.1e+02 Score=27.71 Aligned_cols=20 Identities=15% Similarity=0.157 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 013864 279 QEERDAISSKIEVSQAHLEL 298 (435)
Q Consensus 279 ~ee~~sl~~q~~~~~~qLdk 298 (435)
.++-..+..+|.-..++|++
T Consensus 88 k~eYk~llk~y~~~~~~L~k 107 (126)
T PF09403_consen 88 KDEYKELLKKYKDLLNKLDK 107 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666554
No 400
>PF12126 DUF3583: Protein of unknown function (DUF3583); InterPro: IPR021978 This domain is found in eukaryotes, and is typically between 302 and 338 amino acids in length. It is found in association with PF00097 from PFAM and PF00643 from PFAM. Most members are promyelocytic leukemia proteins, and this family lies towards the C terminus.
Probab=55.20 E-value=2.6e+02 Score=29.10 Aligned_cols=37 Identities=27% Similarity=0.462 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 013864 222 IEEEERKLEAAIEE-TEKQNAEVNAELKELELKSKRFK 258 (435)
Q Consensus 222 Le~EE~~L~~eL~~-lE~e~~~l~~el~~le~e~~~L~ 258 (435)
++.+|++|.+.++. -+++++++..+|..|+.-+.++.
T Consensus 51 VqaqEreLLe~v~~rYqR~y~ema~~L~~LeavLqRir 88 (324)
T PF12126_consen 51 VQAQERELLEAVEARYQRDYEEMAGQLGRLEAVLQRIR 88 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 46666666666653 35666666666666666555553
No 401
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=55.12 E-value=3e+02 Score=29.62 Aligned_cols=20 Identities=20% Similarity=0.077 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHhhcC
Q 013864 338 INAAWGQACLLLHTMCQYFR 357 (435)
Q Consensus 338 INAAwGQ~~LLL~tla~kl~ 357 (435)
||--+--+.+||.+++.-++
T Consensus 344 inllL~l~~vlLv~vSt~~~ 363 (395)
T PF10267_consen 344 INLLLTLLTVLLVFVSTVAN 363 (395)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 44445555555555555543
No 402
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=54.83 E-value=2e+02 Score=31.59 Aligned_cols=89 Identities=10% Similarity=0.071 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCce
Q 013864 230 EAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAF 309 (435)
Q Consensus 230 ~~eL~~lE~e~~~l~~el~~le~e~~~L~~eE~~~w~e~n~~q~qL~~~~ee~~sl~~q~~~~~~qLdkLrktNV~Nd~F 309 (435)
.++++.+..+.-.|..+|.++|++...+ -+..+-|+..+.++..+..+........++.++..|=|-.+|
T Consensus 322 ~ed~~~~q~q~~~Lrs~~~d~EAq~r~l----------~s~~~~q~~~~h~~ka~~~~~~~~l~~~~ec~~~e~e~~~~~ 391 (554)
T KOG4677|consen 322 AEDSAHIQDQYTLLRSQIIDIEAQDRHL----------ESAGQTQIFRKHPRKASILNMPLVLTLFYECFYHETEAEGTF 391 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhH----------HHHhHHHHHHhhhHhhhhhhchHHHHHHHHHHHHHHHHhhhh
Confidence 3444555555555555555555443333 334566777777888888888888888888888777776666
Q ss_pred eeeecC------------CeeeeccccCCCC
Q 013864 310 PIWHDG------------EFGTINNFRLGRL 328 (435)
Q Consensus 310 ~I~hdG------------~fGTINGlRLGrl 328 (435)
--.... -=.+||-+|+--+
T Consensus 392 ~~r~~~~~qski~dk~~el~kl~~~l~~r~~ 422 (554)
T KOG4677|consen 392 SSRVNLKKQSKIPDKQYELTKLAARLKLRAW 422 (554)
T ss_pred hhhccchhhccCcchHHHHHHHHHHHHHHhh
Confidence 322211 1245788877543
No 403
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=54.82 E-value=2.4e+02 Score=28.52 Aligned_cols=29 Identities=17% Similarity=0.236 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 013864 275 LIAHQEERDAISSKIEVSQAHLELLKRTN 303 (435)
Q Consensus 275 L~~~~ee~~sl~~q~~~~~~qLdkLrktN 303 (435)
|..|.+.++.+..+.-....++|+++|.+
T Consensus 221 lnah~~sLqwl~d~st~~e~k~d~i~K~~ 249 (254)
T KOG2196|consen 221 LNAHMDSLQWLDDNSTQLEKKLDKIKKLK 249 (254)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhh
Confidence 44555555555555555555666666543
No 404
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=54.70 E-value=1.2e+02 Score=34.36 Aligned_cols=42 Identities=21% Similarity=0.307 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 217 KEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (435)
Q Consensus 217 ~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~ 258 (435)
.|+.++|....+|..+|+++-...+++.+.|...+.|+.+|+
T Consensus 93 ~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk 134 (907)
T KOG2264|consen 93 LELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALK 134 (907)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 344555555555556666665555555555555555555554
No 405
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=54.51 E-value=3.6e+02 Score=33.25 Aligned_cols=23 Identities=22% Similarity=0.378 Sum_probs=12.7
Q ss_pred HHHHhhcccCCCceeeeecCCee
Q 013864 296 LELLKRTNVLNDAFPIWHDGEFG 318 (435)
Q Consensus 296 LdkLrktNV~Nd~F~I~hdG~fG 318 (435)
...|+..+-.|..|..-++..+|
T Consensus 947 ~s~l~~~~~~~~~~~~~~~~~~~ 969 (1294)
T KOG0962|consen 947 VSLLHQIYKLNECFEQYGFDDLR 969 (1294)
T ss_pred HHHHHHHHHhHHHHHHHhhhhhc
Confidence 34444445555666666665555
No 406
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=54.48 E-value=1.9e+02 Score=29.63 Aligned_cols=26 Identities=8% Similarity=0.174 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 274 QLIAHQEERDAISSKIEVSQAHLELL 299 (435)
Q Consensus 274 qL~~~~ee~~sl~~q~~~~~~qLdkL 299 (435)
++...+.+...+.++++.++.+|+.+
T Consensus 159 ~~~~~~~~l~~~~~~l~~~~~~l~~~ 184 (370)
T PRK11578 159 QIGTIDAQIKRNQASLDTAKTNLDYT 184 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34444555566677777777776543
No 407
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=54.30 E-value=1e+02 Score=31.21 Aligned_cols=25 Identities=16% Similarity=0.267 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013864 175 RVLSDKLDKEVDDVTRDIEAYEACLQRLE 203 (435)
Q Consensus 175 d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~ 203 (435)
|.|..+|++.+-.++ +...-+.++.
T Consensus 160 d~l~~eLqkr~~~v~----~l~~q~~k~~ 184 (289)
T COG4985 160 DPLERELQKRLLEVE----TLRDQVDKMV 184 (289)
T ss_pred cHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 556666777666553 3333444444
No 408
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=54.27 E-value=1.9e+02 Score=29.64 Aligned_cols=121 Identities=6% Similarity=0.103 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccccc-CCCHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Q 013864 174 MRVLSDKLDKEVDDVTRDIEAYEACLQRLE--GEARD-VLSEADFLKEKLKIEEEERKLEA-------AIEETEKQNAEV 243 (435)
Q Consensus 174 ~d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~--~~~~~-~~~ee~l~~e~~~Le~EE~~L~~-------eL~~lE~e~~~l 243 (435)
.+.-++.++++++.++.....|+.--.-+. .+... ...-.++..++.+++.+...+.. ++..++.+.+.+
T Consensus 175 l~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~~~~~~~P~v~~l~~~i~~l 254 (362)
T TIGR01010 175 AENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRVQAQLAQLRSITPEQNPQVPSLQARIKSL 254 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHH
Confidence 344456666777777776666665211111 10000 00113344444555555444432 344555555555
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 244 NAELKELELKSKRF-KELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQA 294 (435)
Q Consensus 244 ~~el~~le~e~~~L-~~eE~~~w~e~n~~q~qL~~~~ee~~sl~~q~~~~~~ 294 (435)
.++|.+...+...- ......--.+|..++++..-.+.-..++..+++.++.
T Consensus 255 ~~~i~~e~~~i~~~~~~~l~~~~~~~~~L~re~~~a~~~y~~~l~r~~~a~~ 306 (362)
T TIGR01010 255 RKQIDEQRNQLSGGLGDSLNEQTADYQRLVLQNELAQQQLKAALTSLQQTRV 306 (362)
T ss_pred HHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555544333210 0011112235666666666666666666666666653
No 409
>PF13166 AAA_13: AAA domain
Probab=54.12 E-value=3.5e+02 Score=30.13 Aligned_cols=8 Identities=25% Similarity=0.264 Sum_probs=3.7
Q ss_pred HHHHHHHH
Q 013864 292 SQAHLELL 299 (435)
Q Consensus 292 ~~~qLdkL 299 (435)
-...|..|
T Consensus 464 iN~~L~~~ 471 (712)
T PF13166_consen 464 INEELKRL 471 (712)
T ss_pred HHHHHHHh
Confidence 33445555
No 410
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=54.01 E-value=1.6e+02 Score=26.28 Aligned_cols=63 Identities=21% Similarity=0.286 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 184 EVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELK 253 (435)
Q Consensus 184 qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e 253 (435)
+|.++..+-+.+..|+..+.. -.++......+..+-..|.+..-.++.+..++..++...-.+
T Consensus 8 eL~~Ll~d~~~l~~~v~~l~~-------~~~~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~ 70 (150)
T PF07200_consen 8 ELQELLSDEEKLDAFVKSLPQ-------VQELQQEREELLAENEELAEQNLSLEPELEELRSQLQELYEE 70 (150)
T ss_dssp HHHHHHHH-HHHHHHGGGGS---------HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCHHHHHHHHHcCHH-------HHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHH
Confidence 445555555556666554421 123334444444444444444444444444444444433333
No 411
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=53.99 E-value=42 Score=26.37 Aligned_cols=29 Identities=34% Similarity=0.578 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 222 IEEEERKLEAAIEETEKQNAEVNAELKEL 250 (435)
Q Consensus 222 Le~EE~~L~~eL~~lE~e~~~l~~el~~l 250 (435)
+..+..+|.+++++++++.+++.++++.+
T Consensus 22 ~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 22 LNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444444444444444444
No 412
>PRK05689 fliJ flagellar biosynthesis chaperone; Validated
Probab=53.23 E-value=1.7e+02 Score=26.10 Aligned_cols=90 Identities=10% Similarity=0.089 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 181 LDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADF---LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 257 (435)
Q Consensus 181 Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l---~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L 257 (435)
...+++.+...++.|..-+..... ..++...+ ..=+..|..........+..++.+.+.....+.+...+.+.+
T Consensus 35 ~~~~L~~L~~y~~~y~~~~~~~~~---~g~~~~~l~~~~~fi~~L~~~I~~q~~~v~~~~~~ve~~r~~~~~a~~~~k~l 111 (147)
T PRK05689 35 AEQQLKMLEDYRLEYRQQLNDRGS---AGMTSSWWINYQQFLQQLEKAITQQRQQLTQWTQKVDNARKYWQEKKQRLEAL 111 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc---CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444454445555443332211 12333333 223455677777777788888888888888888888888888
Q ss_pred HHHHHHHHHHHhHHHH
Q 013864 258 KELEERYWQEFNNFQF 273 (435)
Q Consensus 258 ~~eE~~~w~e~n~~q~ 273 (435)
+.+-++...+|...+.
T Consensus 112 EkL~ek~~~~~~~~e~ 127 (147)
T PRK05689 112 ETLQERYQTEARLAEN 127 (147)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888877777765543
No 413
>KOG4787 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.14 E-value=1.2e+02 Score=34.28 Aligned_cols=73 Identities=15% Similarity=0.124 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccc-cc-CCCHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Q 013864 178 SDKLDKEVDDVTRDIEAYEACLQRLEGEA-RD-VLSEADFLKEKLKIEEE-------ERKLEAAIEETEKQNAEVNAELK 248 (435)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~fL~~L~~~~-~~-~~~ee~l~~e~~~Le~E-------E~~L~~eL~~lE~e~~~l~~el~ 248 (435)
+..|.++|+++.+-|....--|+++.... +. .... .....++.||+| -.+|.+||+.+++-.++++....
T Consensus 461 ~~sL~~~LeqAsK~CRIL~~RL~K~~R~q~R~~~~~~-~d~~kIK~LE~e~R~S~~Ls~~L~~ElE~~~~~~~~~e~~~e 539 (852)
T KOG4787|consen 461 VISLATKLEQANKQCRILNERLNKLHRKQVRDGEIQY-SDELKIKILELEKRLSEKLAIDLVSELEGKIPTIDEIEQCCE 539 (852)
T ss_pred HHHHHHHHHHHhchhHHHHHHHhHHHHHHHhhhhhcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHhHHHHHHH
Confidence 34566777777777777666666665322 11 0110 001111222222 24566777777766666666555
Q ss_pred HHH
Q 013864 249 ELE 251 (435)
Q Consensus 249 ~le 251 (435)
.|-
T Consensus 540 vL~ 542 (852)
T KOG4787|consen 540 VLA 542 (852)
T ss_pred HHH
Confidence 553
No 414
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=53.13 E-value=1.1e+02 Score=34.49 Aligned_cols=48 Identities=19% Similarity=0.304 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 213 ADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKEL 260 (435)
Q Consensus 213 e~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~~e 260 (435)
.||.....+|--|..-|+-||+...+-...++.+|+++++|+++++.+
T Consensus 325 NDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~e 372 (832)
T KOG2077|consen 325 NDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAE 372 (832)
T ss_pred HHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666677777777888888888888888888888888888777643
No 415
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=53.02 E-value=95 Score=32.75 Aligned_cols=15 Identities=20% Similarity=0.383 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHh
Q 013864 189 TRDIEAYEACLQRLE 203 (435)
Q Consensus 189 ~~E~d~Y~~fL~~L~ 203 (435)
.+..+.|+.+++.+.
T Consensus 214 ~r~~~Yf~~l~~~f~ 228 (406)
T PF02388_consen 214 IRSLEYFENLYDAFG 228 (406)
T ss_dssp ---HHHHHHHHHHCC
T ss_pred ccCHHHHHHHHHhcC
Confidence 456677888888773
No 416
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=52.95 E-value=3.1e+02 Score=29.16 Aligned_cols=33 Identities=24% Similarity=0.214 Sum_probs=18.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013864 268 FNNFQFQLIAHQEERDAISSKIEVSQAHLELLK 300 (435)
Q Consensus 268 ~n~~q~qL~~~~ee~~sl~~q~~~~~~qLdkLr 300 (435)
++..+-++.+++.+.+....-|+......+.+.
T Consensus 368 ~~~~~~~l~~L~Re~~~~r~~ye~lL~r~qe~~ 400 (458)
T COG3206 368 LPKLQVQLRELEREAEAARSLYETLLQRYQELS 400 (458)
T ss_pred chHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455566666666666666666555444443
No 417
>PRK11281 hypothetical protein; Provisional
Probab=52.87 E-value=84 Score=37.90 Aligned_cols=16 Identities=31% Similarity=0.053 Sum_probs=10.4
Q ss_pred hhHHHHHHHHHHHHHH
Q 013864 335 WDEINAAWGQACLLLH 350 (435)
Q Consensus 335 W~EINAAwGQ~~LLL~ 350 (435)
-.++|.+++|..+=+.
T Consensus 283 ~~~~N~~Ls~~L~~~t 298 (1113)
T PRK11281 283 ELEINLQLSQRLLKAT 298 (1113)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3477888887765443
No 418
>PF08286 Spc24: Spc24 subunit of Ndc80; InterPro: IPR013252 Spc24 is a component of the evolutionarily conserved kinetochore-associated Ndc80 complex and is involved in chromosome segregation [].; PDB: 2VE7_D 2FV4_B 2FTX_B.
Probab=52.39 E-value=5 Score=35.22 Aligned_cols=41 Identities=22% Similarity=0.411 Sum_probs=0.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 221 KIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELE 261 (435)
Q Consensus 221 ~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~~eE 261 (435)
+|+.+.-++.+++..||.+...+..++.+++.+..+|+.++
T Consensus 3 ~Ld~~k~~laK~~~~LE~~l~~l~~el~~L~~~l~eLe~~~ 43 (118)
T PF08286_consen 3 ELDNEKFRLAKELSDLESELESLQSELEELKEELEELEEQE 43 (118)
T ss_dssp ----------------------------------------H
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455555566666666666666666666665555554433
No 419
>smart00338 BRLZ basic region leucin zipper.
Probab=52.31 E-value=61 Score=25.21 Aligned_cols=30 Identities=23% Similarity=0.461 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 228 KLEAAIEETEKQNAEVNAELKELELKSKRF 257 (435)
Q Consensus 228 ~L~~eL~~lE~e~~~l~~el~~le~e~~~L 257 (435)
.|+.++..|+.+..+|..++..++.+...|
T Consensus 30 ~Le~~~~~L~~en~~L~~~~~~l~~e~~~l 59 (65)
T smart00338 30 ELERKVEQLEAENERLKKEIERLRRELEKL 59 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444443333
No 420
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=52.23 E-value=86 Score=34.98 Aligned_cols=26 Identities=31% Similarity=0.422 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 216 LKEKLKIEEEERKLEAAIEETEKQNA 241 (435)
Q Consensus 216 ~~e~~~Le~EE~~L~~eL~~lE~e~~ 241 (435)
.+++.++|++..+|++++.+++.+.+
T Consensus 562 ~~~~~~~e~~i~~le~~~~~l~~~l~ 587 (638)
T PRK10636 562 RKEIARLEKEMEKLNAQLAQAEEKLG 587 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455566666666666666666654
No 421
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=52.10 E-value=1.3e+02 Score=24.73 Aligned_cols=28 Identities=14% Similarity=0.277 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013864 274 QLIAHQEERDAISSKIEVSQAHLELLKR 301 (435)
Q Consensus 274 qL~~~~ee~~sl~~q~~~~~~qLdkLrk 301 (435)
+...++.+...+..++.+...++..++.
T Consensus 70 ~~~~~~~~i~~l~~~~~~l~~~l~~~~~ 97 (106)
T PF01920_consen 70 RIEKLEKEIKKLEKQLKYLEKKLKELKK 97 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444455555555555554443
No 422
>PRK09343 prefoldin subunit beta; Provisional
Probab=51.83 E-value=1.7e+02 Score=25.88 Aligned_cols=22 Identities=18% Similarity=0.323 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 013864 180 KLDKEVDDVTRDIEAYEACLQR 201 (435)
Q Consensus 180 ~Ld~qle~~~~E~d~Y~~fL~~ 201 (435)
+|..+++....+.+.++.-++.
T Consensus 4 ~~~~~~q~~~~~~q~lq~~l~~ 25 (121)
T PRK09343 4 NIPPEVQAQLAQLQQLQQQLER 25 (121)
T ss_pred hhhHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444433
No 423
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=51.81 E-value=2.7e+02 Score=28.19 Aligned_cols=22 Identities=14% Similarity=0.170 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 013864 181 LDKEVDDVTRDIEAYEACLQRL 202 (435)
Q Consensus 181 Ld~qle~~~~E~d~Y~~fL~~L 202 (435)
++.++++++.+...-+.-++.+
T Consensus 84 ~~~~l~~a~a~l~~a~a~l~~~ 105 (346)
T PRK10476 84 YELTVAQAQADLALADAQIMTT 105 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666655555544
No 424
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=51.73 E-value=2.5e+02 Score=27.68 Aligned_cols=28 Identities=14% Similarity=0.258 Sum_probs=16.8
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 013864 262 ERYWQEFNNFQFQLIAHQEERDAISSKI 289 (435)
Q Consensus 262 ~~~w~e~n~~q~qL~~~~ee~~sl~~q~ 289 (435)
+..|...+.|.-.|..+++-++...++.
T Consensus 181 ~~i~~~L~~~~~kL~Dl~~~l~eA~~~~ 208 (264)
T PF06008_consen 181 EAIRDDLNDYNAKLQDLRDLLNEAQNKT 208 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467777777776666666555444433
No 425
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=51.58 E-value=2.6e+02 Score=28.14 Aligned_cols=89 Identities=13% Similarity=0.146 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH----------HHHHHHH
Q 013864 210 LSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQ----------FQLIAHQ 279 (435)
Q Consensus 210 ~~ee~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~~eE~~~w~e~n~~q----------~qL~~~~ 279 (435)
++..++..++...+.+...+..++..++.+.. .++++.++.+.+..+..-+...++|...+ .++.+.+
T Consensus 74 ld~~~~~~~l~~~~a~l~~~~~~l~~~~~~~~--~~~i~~~~~~l~~ak~~l~~a~~~~~r~~~L~~~g~vs~~~~~~~~ 151 (331)
T PRK03598 74 LDAAPYENALMQAKANVSVAQAQLDLMLAGYR--DEEIAQARAAVKQAQAAYDYAQNFYNRQQGLWKSRTISANDLENAR 151 (331)
T ss_pred EChHHHHHHHHHHHHHHHHHHHHHHHHHccCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 013864 280 EERDAISSKIEVSQAHLELLK 300 (435)
Q Consensus 280 ee~~sl~~q~~~~~~qLdkLr 300 (435)
.+.....+++..+...+..++
T Consensus 152 ~~~~~a~~~~~~a~~~~~~~~ 172 (331)
T PRK03598 152 SSRDQAQATLKSAQDKLSQYR 172 (331)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
No 426
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=51.56 E-value=32 Score=27.08 Aligned_cols=31 Identities=29% Similarity=0.382 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 227 RKLEAAIEETEKQNAEVNAELKELELKSKRF 257 (435)
Q Consensus 227 ~~L~~eL~~lE~e~~~l~~el~~le~e~~~L 257 (435)
..+.+++.+++++.+++.++..+|+.+.+.|
T Consensus 20 ~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 20 YQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555566665555555555555555555
No 427
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=51.47 E-value=1.6e+02 Score=25.39 Aligned_cols=93 Identities=19% Similarity=0.223 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 213 ADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVS 292 (435)
Q Consensus 213 e~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~~eE~~~w~e~n~~q~qL~~~~ee~~sl~~q~~~~ 292 (435)
+++......+..++..|.+.-..|+......+.=+++-+.+..+-...-++=-+.......++..+..+...+...+...
T Consensus 21 ~e~~~~~~~~~~~e~~L~~~e~~l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~ 100 (126)
T PF13863_consen 21 EEIERREEQLKQREEELEKKEQELEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKL 100 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhhcccC
Q 013864 293 QAHLELLKRTNVL 305 (435)
Q Consensus 293 ~~qLdkLrktNV~ 305 (435)
...+..++...-|
T Consensus 101 e~~l~~~~~Y~~f 113 (126)
T PF13863_consen 101 EEKLEEYKKYEEF 113 (126)
T ss_pred HHHHHHHHHHHHH
No 428
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=51.41 E-value=2e+02 Score=26.42 Aligned_cols=75 Identities=27% Similarity=0.374 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccc--CCC--HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 179 DKLDKEVDDVTRDIEAYEACLQRLEGEARD--VLS--EAD------FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELK 248 (435)
Q Consensus 179 e~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~--~~~--ee~------l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~ 248 (435)
..++..++....+++........++--..+ .+. --+ ..+-...||+-.+.+.++|+.||.+.+.+.+++.
T Consensus 33 ~~lk~dik~~k~~~enledA~~EieL~Dedd~~Ip~~vGdvF~~~~~~~~~~~LEe~ke~l~k~i~~les~~e~I~~~m~ 112 (131)
T KOG1760|consen 33 DDLKADIKEAKTEIENLEDASNEIELLDEDDEDIPFKVGDVFIHVKLDKLQDQLEEKKETLEKEIEELESELESISARMD 112 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhhcCccccccceehhhhheeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457777777777777777766666521111 000 000 1222345777778888888888888887777777
Q ss_pred HHHHH
Q 013864 249 ELELK 253 (435)
Q Consensus 249 ~le~e 253 (435)
+|+.-
T Consensus 113 ~LK~~ 117 (131)
T KOG1760|consen 113 ELKKV 117 (131)
T ss_pred HHHHH
Confidence 77653
No 429
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=51.36 E-value=4.1e+02 Score=32.22 Aligned_cols=35 Identities=14% Similarity=0.284 Sum_probs=17.6
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHH
Q 013864 167 QPLCLECMRVLSDKLDKEVDDVTRDIE-----AYEACLQRL 202 (435)
Q Consensus 167 hPLC~eC~d~Lle~Ld~qle~~~~E~d-----~Y~~fL~~L 202 (435)
.|--.+|.. -++..+.....++.... .|..|..++
T Consensus 724 ~p~i~~i~r-~l~~~e~~~~~L~~~~n~ved~if~~f~~~i 763 (1141)
T KOG0018|consen 724 GPEISEIKR-KLQNREGEMKELEERMNKVEDRIFKGFCRRI 763 (1141)
T ss_pred CchHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 344444444 55555555555544333 366666554
No 430
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=51.33 E-value=88 Score=24.28 Aligned_cols=41 Identities=27% Similarity=0.377 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 220 LKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKEL 260 (435)
Q Consensus 220 ~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~~e 260 (435)
.+-......|+.++..|+.+...+..++..|+.+...|..+
T Consensus 22 ~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e 62 (64)
T PF00170_consen 22 QRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSE 62 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 431
>KOG0796 consensus Spliceosome subunit [RNA processing and modification]
Probab=51.31 E-value=2.7e+02 Score=29.14 Aligned_cols=32 Identities=19% Similarity=0.350 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHh
Q 013864 172 ECMRVLSDKLDKEVDDVTRDIEAYEA--CLQRLE 203 (435)
Q Consensus 172 eC~d~Lle~Ld~qle~~~~E~d~Y~~--fL~~L~ 203 (435)
.|...--+.|+.+|+.+.++.+.+.. |+..|+
T Consensus 56 ~C~kvHd~~lk~~Ye~~~k~~~~~~E~d~~~~l~ 89 (319)
T KOG0796|consen 56 PCPKVHDEALKADYERASKERDYGYEWDALEILE 89 (319)
T ss_pred cccchhhHHHHHHHhhchHhhhhhhhHHHHHHHH
Confidence 47778889999999999998887433 444444
No 432
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=50.74 E-value=2.1e+02 Score=31.02 Aligned_cols=93 Identities=20% Similarity=0.320 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 215 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQA 294 (435)
Q Consensus 215 l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~~eE~~~w~e~n~~q~qL~~~~ee~~sl~~q~~~~~~ 294 (435)
...++.+|..+-+++..++++|..++.++.++|...-.+... .......+.+.+.-++.....+.+.++++++..
T Consensus 27 ~~~~~~~ld~~~r~~~~~~e~l~~~rn~~sk~ig~~~~~~~~---~~~~l~~e~~~l~~~l~~~e~~~~~~~~~l~~~-- 101 (429)
T COG0172 27 DVDKLLELDEERRKLLRELEELQAERNELSKEIGRALKRGED---DAEELIAEVKELKEKLKELEAALDELEAELDTL-- 101 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccch---hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH--
Confidence 345667788899999999999999999998888743222111 112344455555555555555544444443322
Q ss_pred HHHHHhhcccCCCceeeeecC
Q 013864 295 HLELLKRTNVLNDAFPIWHDG 315 (435)
Q Consensus 295 qLdkLrktNV~Nd~F~I~hdG 315 (435)
.|.--||-.+.=.++-|+
T Consensus 102 ---ll~ipNi~~~~VPvg~de 119 (429)
T COG0172 102 ---LLTIPNIPHESVPVGKDE 119 (429)
T ss_pred ---HHhCCCCCccccCcCCCc
Confidence 234457776666665543
No 433
>KOG1854 consensus Mitochondrial inner membrane protein (mitofilin) [Cell wall/membrane/envelope biogenesis]
Probab=50.50 E-value=4.4e+02 Score=30.18 Aligned_cols=26 Identities=15% Similarity=0.078 Sum_probs=14.6
Q ss_pred HHHHHHhhcCCCCC-CceeEEecCCcc
Q 013864 348 LLHTMCQYFRPKFP-YRIKIIPMGSYP 373 (435)
Q Consensus 348 LL~tla~kl~~kF~-~~YkLvPmGS~S 373 (435)
.+.+=+.+-.+++. |.-|..|.|+..
T Consensus 474 w~ac~nlk~s~~~g~~e~r~~pLg~~v 500 (657)
T KOG1854|consen 474 WLACSNLKDSLNKGHYEMRRHPLGKHV 500 (657)
T ss_pred HHHHHHHHHhhhccccccccCchhHHH
Confidence 44444444444443 456789999665
No 434
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=50.43 E-value=2.8e+02 Score=27.82 Aligned_cols=82 Identities=12% Similarity=0.227 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccc---------CCCH-HHH----------------------------HHH-
Q 013864 178 SDKLDKEVDDVTRDIEAYEACLQRLEGEARD---------VLSE-ADF----------------------------LKE- 218 (435)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~---------~~~e-e~l----------------------------~~e- 218 (435)
++.|++++..++.+...-..-..+|+.+-.. ...+ ..+ ..-
T Consensus 1 l~~lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~sp~ss~~~~~~~~si 80 (248)
T PF08172_consen 1 LEELQKELSELEAKLEEQKELNAKLENDLAKVQASSSASRSFNDGASMASGATRQIPNSGRSGSLSPTSSIIGGGGDSSI 80 (248)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCcccccccchhhccCccccCCCCCCccCCCCCCcccH
Confidence 4679999999999999999988999864210 0000 000 001
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 219 KLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKE 259 (435)
Q Consensus 219 ~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~~ 259 (435)
+-=+-...++.++...+||.|.....+++..|+.|.+.|+.
T Consensus 81 LpIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~ 121 (248)
T PF08172_consen 81 LPIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRA 121 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11245667777777777887777777777777777666654
No 435
>PRK06800 fliH flagellar assembly protein H; Validated
Probab=49.93 E-value=1.7e+02 Score=28.69 Aligned_cols=25 Identities=4% Similarity=0.278 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 220 LKIEEEERKLEAAIEETEKQNAEVN 244 (435)
Q Consensus 220 ~~Le~EE~~L~~eL~~lE~e~~~l~ 244 (435)
..|+...+.|.+++..|+.+...++
T Consensus 41 ~~L~~~Q~~L~~e~~~l~~eqQ~l~ 65 (228)
T PRK06800 41 EELLAQQKSLHKELNQLRQEQQKLE 65 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 436
>PRK10869 recombination and repair protein; Provisional
Probab=49.92 E-value=4e+02 Score=29.52 Aligned_cols=77 Identities=16% Similarity=0.129 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCc
Q 013864 232 AIEETEKQNAEVNAELKELE---LKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDA 308 (435)
Q Consensus 232 eL~~lE~e~~~l~~el~~le---~e~~~L~~eE~~~w~e~n~~q~qL~~~~ee~~sl~~q~~~~~~qLdkLrktNV~Nd~ 308 (435)
.++++-.-.+++.+++..++ .....|+.+.++.++.+...-.+|.. .|...-.++. ..=...|+..+.=+..
T Consensus 318 ~~~~~~~~~~~l~~eL~~L~~~e~~l~~Le~e~~~l~~~l~~~A~~LS~---~R~~aA~~l~--~~v~~~L~~L~m~~a~ 392 (553)
T PRK10869 318 SPEELPQHHQQLLEEQQQLDDQEDDLETLALAVEKHHQQALETAQKLHQ---SRQRYAKELA--QLITESMHELSMPHGK 392 (553)
T ss_pred CHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH--HHHHHHHHHcCCCCcE
Confidence 45555555556666665554 33444444444555555444433322 2322222222 2224567888888999
Q ss_pred eeeee
Q 013864 309 FPIWH 313 (435)
Q Consensus 309 F~I~h 313 (435)
|+|..
T Consensus 393 f~v~~ 397 (553)
T PRK10869 393 FTIDV 397 (553)
T ss_pred EEEEE
Confidence 99886
No 437
>PF03245 Phage_lysis: Bacteriophage Rz lysis protein; InterPro: IPR004929 Many bacteriophages with Gram-negative hosts contain two auxiliary lysis genes Rz and Rz1. These genes are nested, with Rz1 occupying the last third of Rz in a +1 reading frame. Both of these genes are required for host cell lysis if the outer membrane is stabilised by millimolar concentrations of divalent cations, but are otherwise uneccessary []. The Rz protein is believed to posses endopeptidase activity, while Rz1 encodes a prolipoprotein which, after cleavage by a signal peptidase, is located in the outer membrane. It has been suggested that these two proteins may form a complex which cleaves the oligopeptide crosslinks between glycosidic strands in the peptidoglycan and the Lpp lipoproteins of the outer bacterial membrane. For more information see []. This entry represents the Rz protein and related sequences. This family is not considered to be a peptidase according to the MEROPs database.; GO: 0019835 cytolysis
Probab=49.76 E-value=1.4e+02 Score=26.74 Aligned_cols=40 Identities=13% Similarity=0.313 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 013864 238 KQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIA 277 (435)
Q Consensus 238 ~e~~~l~~el~~le~e~~~L~~eE~~~w~e~n~~q~qL~~ 277 (435)
.+.......++..+.....+.++..+|+++.++-+.+...
T Consensus 14 ~~~~~~~~~i~~~~~~~~~la~ld~k~tkEL~~Ak~e~~~ 53 (125)
T PF03245_consen 14 AALEAANAAIEDMQQRQQALAALDAKYTKELADAKAEIDR 53 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 3333344455556666667888888888888777665433
No 438
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=49.74 E-value=3.7e+02 Score=29.11 Aligned_cols=20 Identities=20% Similarity=0.132 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHhhcC
Q 013864 338 INAAWGQACLLLHTMCQYFR 357 (435)
Q Consensus 338 INAAwGQ~~LLL~tla~kl~ 357 (435)
||--+--+..||.+++.-++
T Consensus 393 iNiiLalm~VlLvfVSTIa~ 412 (455)
T KOG3850|consen 393 INIILALMTVLLVFVSTIAN 412 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 66666666667777776663
No 439
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=48.97 E-value=3.6e+02 Score=28.73 Aligned_cols=15 Identities=33% Similarity=0.370 Sum_probs=8.6
Q ss_pred ccchHHHHHHHHHhh
Q 013864 145 FHSTITVLKRAFEIA 159 (435)
Q Consensus 145 ls~~i~~l~~lFdIL 159 (435)
+.+.|..++=.|.|-
T Consensus 45 ~f~~iss~gwff~i~ 59 (401)
T PF06785_consen 45 VFSIISSLGWFFAIG 59 (401)
T ss_pred ehHHHHHhHHHHHhh
Confidence 344566666666654
No 440
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=48.86 E-value=1.7e+02 Score=24.84 Aligned_cols=26 Identities=12% Similarity=0.387 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 215 FLKEKLKIEEEERKLEAAIEETEKQN 240 (435)
Q Consensus 215 l~~e~~~Le~EE~~L~~eL~~lE~e~ 240 (435)
+..+++.|.....+|.++|...+...
T Consensus 37 ~e~ei~~l~~dr~rLa~eLD~~~ar~ 62 (89)
T PF13747_consen 37 LEEEIQRLDADRSRLAQELDQAEARA 62 (89)
T ss_pred HHHHHHHHHhhHHHHHHHHHhHHHHH
Confidence 33344444444444444444444433
No 441
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=48.72 E-value=32 Score=30.64 Aligned_cols=15 Identities=20% Similarity=0.580 Sum_probs=11.5
Q ss_pred cCCCceeeeecCCeee
Q 013864 304 VLNDAFPIWHDGEFGT 319 (435)
Q Consensus 304 V~Nd~F~I~hdG~fGT 319 (435)
+|++-|||.+ -+||.
T Consensus 82 lY~EGFHICn-~hyG~ 96 (114)
T COG4467 82 LYQEGFHICN-VHYGS 96 (114)
T ss_pred HHhccchhHH-HHhcc
Confidence 5899999977 56654
No 442
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=48.68 E-value=1.8e+02 Score=25.19 Aligned_cols=40 Identities=23% Similarity=0.400 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 220 LKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKE 259 (435)
Q Consensus 220 ~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~~ 259 (435)
.++..+-..+.++|..++++.-++.+.-.++-.+..++.+
T Consensus 6 ~~~~~~~~~l~~~L~~v~~~~l~l~~~n~el~~el~~l~~ 45 (106)
T PF05837_consen 6 LNLQQESRSLQEKLSDVEKKRLRLKRRNQELAQELLELAE 45 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556666666666666666655555555555543
No 443
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.54 E-value=3.1e+02 Score=27.95 Aligned_cols=27 Identities=7% Similarity=0.303 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013864 178 SDKLDKEVDDVTRDIEAYEACLQRLEG 204 (435)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~fL~~L~~ 204 (435)
+..=+.++..++++....+.-++.|..
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~ 59 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDN 59 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666666666666666543
No 444
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=48.33 E-value=4e+02 Score=29.13 Aligned_cols=16 Identities=19% Similarity=0.389 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 013864 400 AMTLFLSCLKDFAEFA 415 (435)
Q Consensus 400 AMvaFLdCL~Q~~e~v 415 (435)
+|+-|..-++|+-.+.
T Consensus 331 ~lk~~e~~~kqL~~~~ 346 (446)
T KOG4438|consen 331 KLKMFENLTKQLNELK 346 (446)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444555544443
No 445
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=48.28 E-value=3.2e+02 Score=30.50 Aligned_cols=60 Identities=20% Similarity=0.396 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHhcccccCCCHHHHH---HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Q 013864 190 RDIEAYEACLQRLEGEARDVLSEADFL---KEKLKIEEEERKLEAAIE----ETEKQNAEVNAELKELE 251 (435)
Q Consensus 190 ~E~d~Y~~fL~~L~~~~~~~~~ee~l~---~e~~~Le~EE~~L~~eL~----~lE~e~~~l~~el~~le 251 (435)
.+.+.|+.-++.|+... .-+..++. +++++|..|-+...+.++ +|+...+++.+++++++
T Consensus 191 ~~~~~yk~~v~~i~~~~--ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~~l~~~~~~~~~~~~~lk 257 (555)
T TIGR03545 191 QDLEEYKKRLEAIKKKD--IKNPLELQKIKEEFDKLKKEGKADKQKIKSAKNDLQNDKKQLKADLAELK 257 (555)
T ss_pred hhHHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34555666666666532 12344443 344445444444333333 34444445555555553
No 446
>KOG3595 consensus Dyneins, heavy chain [Cytoskeleton]
Probab=48.28 E-value=5.9e+02 Score=31.64 Aligned_cols=52 Identities=17% Similarity=0.210 Sum_probs=28.4
Q ss_pred HHHHHHhhcCCcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013864 152 LKRAFEIATSQTQVEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLE 203 (435)
Q Consensus 152 l~~lFdILSs~s~IDhPLC~eC~d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~ 203 (435)
....|+.++...-+-+--=.+=-.....-+......+...+..|..-|++|.
T Consensus 676 ~~~~~~~~~r~~~~tp~~~l~~i~~f~~ll~~k~~~~~~~~~r~~~gl~kl~ 727 (1395)
T KOG3595|consen 676 FASYFDRLSRHNYVTPTSYLEFIGTFKKLLKEKRSEVRLRKLRLELGLDKLK 727 (1395)
T ss_pred hHHHHHhcCceeecCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhh
Confidence 3344555544443333222233344455566666777777777777777765
No 447
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=48.24 E-value=3.1e+02 Score=27.85 Aligned_cols=16 Identities=13% Similarity=0.202 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 013864 184 EVDDVTRDIEAYEACL 199 (435)
Q Consensus 184 qle~~~~E~d~Y~~fL 199 (435)
+|+-+.-|-+.-.+-|
T Consensus 60 RL~HLS~EEK~~RrKL 75 (292)
T KOG4005|consen 60 RLDHLSWEEKVQRRKL 75 (292)
T ss_pred hhcccCHHHHHHHHHH
Confidence 3443333333333333
No 448
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=48.23 E-value=2.7e+02 Score=27.07 Aligned_cols=25 Identities=8% Similarity=0.177 Sum_probs=13.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 170 CLECMRVLSDKLDKEVDDVTRDIEA 194 (435)
Q Consensus 170 C~eC~d~Lle~Ld~qle~~~~E~d~ 194 (435)
|..=.+.|-+.+..+...+..+++.
T Consensus 16 ~~~~i~~L~~q~~~~~~~i~~~r~~ 40 (206)
T PF14988_consen 16 KEKKIEKLWKQYIQQLEEIQRERQE 40 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555556666666665554
No 449
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=48.07 E-value=6.3e+02 Score=31.34 Aligned_cols=22 Identities=9% Similarity=0.220 Sum_probs=11.5
Q ss_pred ccchHHHHHHHHHhhc-CCcccC
Q 013864 145 FHSTITVLKRAFEIAT-SQTQVE 166 (435)
Q Consensus 145 ls~~i~~l~~lFdILS-s~s~ID 166 (435)
+..++..|.++=.||+ ++.+|+
T Consensus 1520 I~e~v~sL~nVd~IL~~T~~di~ 1542 (1758)
T KOG0994|consen 1520 IQERVASLPNVDAILSRTKGDIA 1542 (1758)
T ss_pred HHHHHHhcccHHHHHHhhhhhHH
Confidence 4455555666666664 344443
No 450
>PF03954 Lectin_N: Hepatic lectin, N-terminal domain; InterPro: IPR005640 Animal lectins display a wide variety of architectures. They are classified according to the carbohydrate-recognition domain (CRD) of which there are two main types, S-type and C-type. C-type lectins display a wide range of specificities. They require Ca2+ for their activity They are found predominantly but not exclusively in vertebrates. This entry presents N-terminal domain, which is found in C-type lectins.; GO: 0005529 sugar binding, 0016020 membrane
Probab=48.01 E-value=1.2e+02 Score=28.03 Aligned_cols=27 Identities=4% Similarity=0.183 Sum_probs=19.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 013864 264 YWQEFNNFQFQLIAHQEERDAISSKIE 290 (435)
Q Consensus 264 ~w~e~n~~q~qL~~~~ee~~sl~~q~~ 290 (435)
+-.+.+.+.+.+..+-.++.++.+|+.
T Consensus 110 LkAdhS~lllhvk~~~~DLr~LsCQma 136 (138)
T PF03954_consen 110 LKADHSTLLLHVKQFPKDLRSLSCQMA 136 (138)
T ss_pred HhhhHHHHHHHHHHHHHHHhhhhhhhh
Confidence 334666777777777888888888765
No 451
>PF09340 NuA4: Histone acetyltransferase subunit NuA4; InterPro: IPR015418 The NuA4 histone acetyltransferase (HAT) multisubunit complex is responsible for acetylation of histone H4 and H2A N-terminal tails in yeast []. NuA4 complexes are highly conserved in eukaryotes and play primary roles in transcription, cellular response to DNA damage, and cell cycle control [].
Probab=48.00 E-value=43 Score=27.89 Aligned_cols=33 Identities=18% Similarity=0.326 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 231 AAIEETEKQNAEVNAELKELELKSKRFKELEERYWQ 266 (435)
Q Consensus 231 ~eL~~lE~e~~~l~~el~~le~e~~~L~~eE~~~w~ 266 (435)
++|.++-+.+.+|+.+|..+|.++ -+.|..|+.
T Consensus 2 ~~L~~l~~~k~~Le~~L~~lE~qI---y~~Et~YL~ 34 (80)
T PF09340_consen 2 KELKELLQKKKKLEKDLAALEKQI---YDKETSYLE 34 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 456666666777777777776653 334445555
No 452
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.99 E-value=1e+02 Score=31.49 Aligned_cols=13 Identities=31% Similarity=0.772 Sum_probs=9.9
Q ss_pred cccCCCCcccccc
Q 013864 13 LSVDPNVPRWVCQ 25 (435)
Q Consensus 13 ~~~~~~~~~~~cq 25 (435)
.+|||-++.|.|-
T Consensus 120 kkV~gkllcwlc~ 132 (305)
T KOG3990|consen 120 KKVDGKLLCWLCT 132 (305)
T ss_pred ccCCccccchhcc
Confidence 4788888888774
No 453
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=47.83 E-value=4.1e+02 Score=29.12 Aligned_cols=23 Identities=22% Similarity=0.326 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 013864 220 LKIEEEERKLEAAIEETEKQNAE 242 (435)
Q Consensus 220 ~~Le~EE~~L~~eL~~lE~e~~~ 242 (435)
++|..|-.+|+..|...+++..+
T Consensus 256 ~~l~~EveRlrt~l~~Aqk~~~e 278 (552)
T KOG2129|consen 256 DKLQAEVERLRTYLSRAQKSYQE 278 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555554443
No 454
>PRK14127 cell division protein GpsB; Provisional
Probab=47.55 E-value=73 Score=28.26 Aligned_cols=53 Identities=19% Similarity=0.245 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHH
Q 013864 213 ADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELK-----------------SKRFKELEERYW 265 (435)
Q Consensus 213 e~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e-----------------~~~L~~eE~~~w 265 (435)
+++.+....+..|-.+|..++..|+.+.+++..++...+.. +++|..+|+..+
T Consensus 33 d~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~~~~~~~~~~~~~~~~~tn~DiLKRls~LEk~VF 102 (109)
T PRK14127 33 DDVIKDYEAFQKEIEELQQENARLKAQVDELTKQVSVGASSSSVATTQPSSSATNYDILKRLSNLEKHVF 102 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccCCCCCcchHHHHHHHHHHHHHHh
No 455
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=47.05 E-value=3.5e+02 Score=28.01 Aligned_cols=85 Identities=14% Similarity=0.211 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 214 DFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQ 293 (435)
Q Consensus 214 ~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~~eE~~~w~e~n~~q~qL~~~~ee~~sl~~q~~~~~ 293 (435)
++..++..+|+-=++.+-..-+|..|+..+.-++.-|+.++..+++.=.+.-++|.....++.......+.+..++..++
T Consensus 81 ~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lr 160 (302)
T PF09738_consen 81 DLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELR 160 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444454445555555666666666666666666555555444444445555555555555556666666666666
Q ss_pred HHHHH
Q 013864 294 AHLEL 298 (435)
Q Consensus 294 ~qLdk 298 (435)
.+|..
T Consensus 161 e~L~~ 165 (302)
T PF09738_consen 161 EQLKQ 165 (302)
T ss_pred HHHHH
Confidence 66543
No 456
>PLN02678 seryl-tRNA synthetase
Probab=47.05 E-value=1.6e+02 Score=32.05 Aligned_cols=28 Identities=29% Similarity=0.346 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 223 EEEERKLEAAIEETEKQNAEVNAELKEL 250 (435)
Q Consensus 223 e~EE~~L~~eL~~lE~e~~~l~~el~~l 250 (435)
.++-++|.++|..+|.+..++++++.++
T Consensus 77 ~~~~~~Lk~ei~~le~~~~~~~~~l~~~ 104 (448)
T PLN02678 77 IAETKELKKEITEKEAEVQEAKAALDAK 104 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555555544443
No 457
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=46.39 E-value=2.7e+02 Score=26.57 Aligned_cols=84 Identities=17% Similarity=0.232 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 213 ADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVS 292 (435)
Q Consensus 213 e~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~~eE~~~w~e~n~~q~qL~~~~ee~~sl~~q~~~~ 292 (435)
+.+.+....++.|-..-..+|..+|+...+-+. .|..+...|+..|+..=..-..+..+...+......+.......
T Consensus 60 ee~~~~r~~~E~E~~~~~~el~~~E~rl~~rE~---~L~~~~~~L~~~e~~l~~~~~~l~~~~~~l~~~~~e~~~~~~~~ 136 (201)
T PF12072_consen 60 EEAQKLRQELERELKERRKELQRLEKRLQQREE---QLDRRLEQLEKREEELEKKEEELEQRKEELEEREEELEELIEEQ 136 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHH
Q 013864 293 QAHLELL 299 (435)
Q Consensus 293 ~~qLdkL 299 (435)
...|++.
T Consensus 137 ~~~Le~i 143 (201)
T PF12072_consen 137 QQELEEI 143 (201)
T ss_pred HHHHHHH
No 458
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=46.36 E-value=4.9e+02 Score=29.57 Aligned_cols=42 Identities=19% Similarity=0.258 Sum_probs=22.5
Q ss_pred CCCCCcccchHHHHHHHH---HhhcCCcccCCcchHHHHHHHHHHHH
Q 013864 139 QPNNSGFHSTITVLKRAF---EIATSQTQVEQPLCLECMRVLSDKLD 182 (435)
Q Consensus 139 ~~~~~~ls~~i~~l~~lF---dILSs~s~IDhPLC~eC~d~Lle~Ld 182 (435)
+.+...|+..|+.+-.+- -+|- .+...|--+||..+|.+..+
T Consensus 525 QE~~~~f~k~i~s~lqrsva~paL~--~~~SsP~~~E~~~lL~~a~~ 569 (741)
T KOG4460|consen 525 QETPDSFEKHIRSILQRSVANPALL--KASSAPPPEECLQLLSRATQ 569 (741)
T ss_pred hhcCCcHHHHHHHhhhhhcCChhcc--ccccCCCcHHHHHHHHHHHH
Confidence 344556666665443321 1111 12234558999999887544
No 459
>PRK10722 hypothetical protein; Provisional
Probab=46.26 E-value=78 Score=31.88 Aligned_cols=33 Identities=12% Similarity=0.290 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 230 EAAIEETEKQNAEVNAELKELELKSKRFKELEE 262 (435)
Q Consensus 230 ~~eL~~lE~e~~~l~~el~~le~e~~~L~~eE~ 262 (435)
+.+|+.+-++..++..++.....++++|.+.|+
T Consensus 175 D~qlD~lrqq~~~Lq~~L~~t~rKLEnLTdIER 207 (247)
T PRK10722 175 DSELDALRQQQQRLQYQLELTTRKLENLTDIER 207 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777777777777777777777777777775
No 460
>PF09321 DUF1978: Domain of unknown function (DUF1978); InterPro: IPR015400 This domain is found in various hypothetical proteins produced by the bacterium Chlamydia pneumoniae. Their exact function has not, as yet, been identified. This entry includes the IncA proteins
Probab=46.11 E-value=3.3e+02 Score=27.48 Aligned_cols=67 Identities=16% Similarity=0.304 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCcee
Q 013864 243 VNAELKELELKSKRFKELEERYWQEFNNFQFQ----------LIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFP 310 (435)
Q Consensus 243 l~~el~~le~e~~~L~~eE~~~w~e~n~~q~q----------L~~~~ee~~sl~~q~~~~~~qLdkLrktNV~Nd~F~ 310 (435)
|+.-...++.+.....+..+-||++.-....+ +.++++-+++|+..+.....+|+.++. -|++..|.
T Consensus 152 Le~~~e~IE~~y~~cv~eQe~YWke~e~~E~Efre~~~k~~s~ee~~~~l~~Le~~l~~~~~~L~~~e~-~i~~~~~e 228 (241)
T PF09321_consen 152 LEKAYENIEEEYQQCVREQEDYWKEEEKKEAEFREEGGKVLSLEEVQEGLQSLEDLLEAWSKQLDKAEK-HILKAELE 228 (241)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcccH
Confidence 34444556666666677777899988777633 356677777888888888888887764 24444443
No 461
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=45.88 E-value=6.8 Score=44.14 Aligned_cols=25 Identities=20% Similarity=0.205 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 013864 276 IAHQEERDAISSKIEVSQAHLELLK 300 (435)
Q Consensus 276 ~~~~ee~~sl~~q~~~~~~qLdkLr 300 (435)
..++++..++....+....+.+.|+
T Consensus 394 ~~L~ek~~~l~~eke~l~~e~~~L~ 418 (713)
T PF05622_consen 394 KQLEEKLEALEEEKERLQEERDSLR 418 (713)
T ss_dssp -------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333343333333333334444444
No 462
>KOG3758 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.70 E-value=5.1e+02 Score=29.60 Aligned_cols=133 Identities=14% Similarity=0.228 Sum_probs=70.4
Q ss_pred HHHHHhhcCCcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcccccCCCHHHHHHHHHHHHHHHHHHHH
Q 013864 153 KRAFEIATSQTQVEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACL-QRLEGEARDVLSEADFLKEKLKIEEEERKLEA 231 (435)
Q Consensus 153 ~~lFdILSs~s~IDhPLC~eC~d~Lle~Ld~qle~~~~E~d~Y~~fL-~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~ 231 (435)
.++--||++.+..|. +|...|-. +-.-+++...+- ++-| ..++... .-..+++.+|.+++.....+..+
T Consensus 16 ~K~~kiL~~~~~~dk----d~~~aL~~-ls~~~~eN~~~~---RRnLr~~iE~~~--l~iN~e~l~ef~~i~~~l~~v~e 85 (655)
T KOG3758|consen 16 NKLSKILNNRTYSDK----DALAALRA-LSTFFEENSLRA---RRNLRSDIESRL--LKINEEFLKEFKEIKRRLDRVSE 85 (655)
T ss_pred HHHHHHHHhcccCcH----HHHHHHHH-HHHHHHhhhHHH---HhhhhhHHHHHH--HHhhHHHHHHHHHHHHHHHHHHH
Confidence 566678999998886 55554433 334444432222 1111 1111110 01235566777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhc
Q 013864 232 AIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQE---ERDAISSKIEVSQAHLELLKRT 302 (435)
Q Consensus 232 eL~~lE~e~~~l~~el~~le~e~~~L~~eE~~~w~e~n~~q~qL~~~~e---e~~sl~~q~~~~~~qLdkLrkt 302 (435)
.+..+..-++.+..++.........|-+ .++.++.+....+. -..+....|...+..++.|..+
T Consensus 86 ~v~km~~t~~~l~s~ls~~k~~t~dli~-------~t~~l~~e~~~le~r~kii~~Fl~~fqLs~~E~~~L~~~ 152 (655)
T KOG3758|consen 86 DVEKMANTCDKLKSNLSTSKATTQDLIQ-------KTETLKEEAAQLELRKKIINAFLDNFQLSSEELDLLTES 152 (655)
T ss_pred HHHHHHHHHHHHHHHHhhccchHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHhcC
Confidence 7777777777766666555544444332 22233332222222 2234445666777788888874
No 463
>PF11488 Lge1: Transcriptional regulatory protein LGE1
Probab=45.65 E-value=1.7e+02 Score=24.08 Aligned_cols=25 Identities=24% Similarity=0.525 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 273 FQLIAHQEERDAISSKIEVSQAHLELL 299 (435)
Q Consensus 273 ~qL~~~~ee~~sl~~q~~~~~~qLdkL 299 (435)
..++.-+.+++.+.-|+. +..||-|
T Consensus 53 ~~~L~~~~~r~~l~vQlt--~EkLdel 77 (80)
T PF11488_consen 53 VKMLETQDPRDELNVQLT--QEKLDEL 77 (80)
T ss_pred HHHHHHhchhhHHhHHHH--HHhHHHH
Confidence 444445556666655544 4446554
No 464
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=45.63 E-value=79 Score=30.31 Aligned_cols=69 Identities=14% Similarity=0.309 Sum_probs=0.0
Q ss_pred CCcchHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 166 EQPLCLE--------CMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETE 237 (435)
Q Consensus 166 DhPLC~e--------C~d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~lE 237 (435)
||++|=| |.+.-.+..++..+..+.+...|..=++..++-. ++..+...+++.+..+|+++|++.+
T Consensus 100 Dy~~CCDGSDE~~~~C~N~C~e~~~~~~~~~~~~~~~~~~G~~~r~~~i------~~a~~~~~e~~~~l~~l~~ei~~~~ 173 (176)
T PF12999_consen 100 DYDICCDGSDESGGKCPNTCAELGKEYREELEEEEEIYKEGLKIRQELI------EEAKKKREELEKKLEELEKEIQAAK 173 (176)
T ss_pred cccccCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred HHH
Q 013864 238 KQN 240 (435)
Q Consensus 238 ~e~ 240 (435)
+|.
T Consensus 174 ~e~ 176 (176)
T PF12999_consen 174 QEK 176 (176)
T ss_pred ccC
No 465
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=45.57 E-value=3.9e+02 Score=28.20 Aligned_cols=15 Identities=7% Similarity=0.177 Sum_probs=9.6
Q ss_pred CccccccccCcceEE
Q 013864 19 VPRWVCQNCRHFLCI 33 (435)
Q Consensus 19 ~~~~~cq~c~~~l~i 33 (435)
+-.|.++-|.+++.-
T Consensus 48 L~~WL~~~~g~~f~~ 62 (359)
T PF10498_consen 48 LCAWLISKAGRKFEQ 62 (359)
T ss_pred HHHHHHHhcCCCCCC
Confidence 346777777766654
No 466
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=45.43 E-value=3.8e+02 Score=27.98 Aligned_cols=98 Identities=28% Similarity=0.306 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------
Q 013864 182 DKEVDDVTRDIEAYEA-CLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVN---------------- 244 (435)
Q Consensus 182 d~qle~~~~E~d~Y~~-fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~---------------- 244 (435)
++.+++++..+....+ -++.|+....+ +..-.+|-..-..-|++-..|+++++++....+
T Consensus 315 dk~~ed~e~kkrqlerqekqeleqmaee---ekkr~eeaeerqraeekeq~eaee~~ra~kr~egvkllkf~fekieare 391 (445)
T KOG2891|consen 315 DKHLEDAEIKKRQLERQEKQELEQMAEE---EKKREEEAEERQRAEEKEQKEAEELERARKREEGVKLLKFEFEKIEARE 391 (445)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 013864 245 -----AELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEER 282 (435)
Q Consensus 245 -----~el~~le~e~~~L~~eE~~~w~e~n~~q~qL~~~~ee~ 282 (435)
.+.+.|+.|...++++|++.-.+-..+.+-+...++-+
T Consensus 392 errkqkeeeklk~e~qkikeleek~~eeedal~~all~~qeir 434 (445)
T KOG2891|consen 392 ERRKQKEEEKLKAEEQKIKELEEKIKEEEDALLLALLNLQEIR 434 (445)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
No 467
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=45.25 E-value=2.4e+02 Score=28.16 Aligned_cols=20 Identities=25% Similarity=0.192 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 013864 271 FQFQLIAHQEERDAISSKIE 290 (435)
Q Consensus 271 ~q~qL~~~~ee~~sl~~q~~ 290 (435)
.+.++...+.+++...++++
T Consensus 194 ~~~~l~~l~~~~~~~~~~l~ 213 (301)
T PF14362_consen 194 AQAELDTLQAQIDAAIAALD 213 (301)
T ss_pred HHHHHHHHHHhHHHHHHHHH
Confidence 33444444444444444443
No 468
>COG5283 Phage-related tail protein [Function unknown]
Probab=45.00 E-value=6.8e+02 Score=30.79 Aligned_cols=77 Identities=16% Similarity=0.121 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccc-CCCHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 178 SDKLDKEVDDVTRDIEAYEACLQRLEGEARD-VLSEADFLKEKL-------KIEEEERKLEAAIEETEKQNAEVNAELKE 249 (435)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~-~~~ee~l~~e~~-------~Le~EE~~L~~eL~~lE~e~~~l~~el~~ 249 (435)
+..|+..+.+.+++.+.|+.-++.-...... ..-.+.|.+.++ .+.+|-.++-..+.+.++...+++++...
T Consensus 24 in~L~ssi~~~~~~~k~~e~q~k~t~~~ls~s~~k~~~l~eameK~k~~~~~~kqe~~evn~at~a~~kay~e~~~q~tq 103 (1213)
T COG5283 24 INVLKSSIKDSTQFWKMLEKQQKLTKDGLSASKGKYEGLSEAMEKQKKAYEDLKQEVKEVNRATQASKKAYQEYNAQYTQ 103 (1213)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4559999999999999999985543321110 000122322222 23444444444555556666666666666
Q ss_pred HHHHH
Q 013864 250 LELKS 254 (435)
Q Consensus 250 le~e~ 254 (435)
++...
T Consensus 104 ae~~~ 108 (1213)
T COG5283 104 AENKL 108 (1213)
T ss_pred HHHHH
Confidence 55443
No 469
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=44.83 E-value=1.3e+02 Score=31.84 Aligned_cols=13 Identities=31% Similarity=0.209 Sum_probs=9.4
Q ss_pred ccchHHHHHHHHH
Q 013864 395 TRYDKAMTLFLSC 407 (435)
Q Consensus 395 ~kFD~AMvaFLdC 407 (435)
.-||.||...|.-
T Consensus 242 ~~~~lai~H~lSH 254 (420)
T PF07407_consen 242 DINDLAIMHLLSH 254 (420)
T ss_pred CcchHHHHHHHhh
Confidence 4688888877763
No 470
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=44.77 E-value=2.2e+02 Score=25.13 Aligned_cols=18 Identities=11% Similarity=0.243 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 013864 283 DAISSKIEVSQAHLELLK 300 (435)
Q Consensus 283 ~sl~~q~~~~~~qLdkLr 300 (435)
+++...+......||++.
T Consensus 84 ~~I~~~L~~inkRLD~~E 101 (102)
T PF01519_consen 84 QLILKTLQSINKRLDKME 101 (102)
T ss_dssp HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhhcc
Confidence 445555566666666653
No 471
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=44.73 E-value=3.7e+02 Score=27.60 Aligned_cols=14 Identities=29% Similarity=0.138 Sum_probs=9.5
Q ss_pred CCChhHHHHHHHHH
Q 013864 332 PVEWDEINAAWGQA 345 (435)
Q Consensus 332 ~V~W~EINAAwGQ~ 345 (435)
.=-|.|+.++|-+.
T Consensus 146 ~~i~~ev~~~~~~m 159 (338)
T PF04124_consen 146 KSIAQEVEAALQQM 159 (338)
T ss_pred HHHHHHHHHHHHHH
Confidence 33588998887443
No 472
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=44.59 E-value=1.8e+02 Score=23.92 Aligned_cols=35 Identities=14% Similarity=0.294 Sum_probs=22.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013864 266 QEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLK 300 (435)
Q Consensus 266 ~e~n~~q~qL~~~~ee~~sl~~q~~~~~~qLdkLr 300 (435)
..|++++..+.....+...|.+++.....+++.|.
T Consensus 28 ~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls 62 (70)
T PF04899_consen 28 SSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLS 62 (70)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777766666666666666666666665554
No 473
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=44.55 E-value=1.4e+02 Score=23.60 Aligned_cols=22 Identities=27% Similarity=0.629 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 013864 182 DKEVDDVTRDIEAYEACLQRLE 203 (435)
Q Consensus 182 d~qle~~~~E~d~Y~~fL~~L~ 203 (435)
+.++..++++++.+...+.++.
T Consensus 3 ~~E~~rL~Kel~kl~~~i~~~~ 24 (66)
T PF10458_consen 3 EAEIERLEKELEKLEKEIERLE 24 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555544443
No 474
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=44.54 E-value=1.7e+02 Score=23.84 Aligned_cols=27 Identities=48% Similarity=0.601 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 227 RKLEAAIEETEKQNAEVNAELKELELK 253 (435)
Q Consensus 227 ~~L~~eL~~lE~e~~~l~~el~~le~e 253 (435)
.+|.+.+.++|++...+...+..++.+
T Consensus 36 KKLr~~~~e~e~~~~~l~~~~~~~e~~ 62 (74)
T PF12329_consen 36 KKLRAKIKELEKQIKELKKKLEELEKE 62 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444443333
No 475
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=44.40 E-value=1.6e+02 Score=23.48 Aligned_cols=28 Identities=29% Similarity=0.434 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 231 AAIEETEKQNAEVNAELKELELKSKRFK 258 (435)
Q Consensus 231 ~eL~~lE~e~~~l~~el~~le~e~~~L~ 258 (435)
..|.+++....+++.-|..++.|...+.
T Consensus 25 ~~i~~~e~~l~ea~~~l~qMe~E~~~~p 52 (79)
T PF05008_consen 25 SLIREIERDLDEAEELLKQMELEVRSLP 52 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTS-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4455556666666666666666655553
No 476
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=44.38 E-value=2.7e+02 Score=29.23 Aligned_cols=75 Identities=13% Similarity=0.153 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHH
Q 013864 228 KLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAI--------SSKIEVSQAHLELL 299 (435)
Q Consensus 228 ~L~~eL~~lE~e~~~l~~el~~le~e~~~L~~eE~~~w~e~n~~q~qL~~~~ee~~sl--------~~q~~~~~~qLdkL 299 (435)
+..+|.++|++|.+++++.-+....+.+++.+....--...+.-+.++.++....... ...++..+.++.+.
T Consensus 1 e~~eEW~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~~~~~~~e~~~~i~~L~~~Ik~r 80 (330)
T PF07851_consen 1 ECEEEWEELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRCKKSLSAEERELIEKLEEDIKER 80 (330)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHH
Q ss_pred hhc
Q 013864 300 KRT 302 (435)
Q Consensus 300 rkt 302 (435)
+..
T Consensus 81 ~~~ 83 (330)
T PF07851_consen 81 RCQ 83 (330)
T ss_pred Hhh
No 477
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=44.37 E-value=1.7e+02 Score=31.21 Aligned_cols=70 Identities=17% Similarity=0.278 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 175 RVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAEL 247 (435)
Q Consensus 175 d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el 247 (435)
+.-..++..+++.+.++++.-.+-+..+.+... ..+++.++..+|.++.+.|++++.+++.+..++-..|
T Consensus 34 d~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~---~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i 103 (425)
T PRK05431 34 DEERRELQTELEELQAERNALSKEIGQAKRKGE---DAEALIAEVKELKEEIKALEAELDELEAELEELLLRI 103 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
No 478
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=44.22 E-value=2e+02 Score=24.32 Aligned_cols=87 Identities=21% Similarity=0.297 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 178 SDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 257 (435)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L 257 (435)
.+.+..++..+..+.+.-..-+..+.++.-+.++ .+++..||.....-...+..-.. ..+..++..|
T Consensus 14 ~e~~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls----~~eL~~LE~~Le~aL~~VR~rK~---------~~l~~~i~~l 80 (100)
T PF01486_consen 14 HEELQQEIAKLRKENESLQKELRHLMGEDLESLS----LKELQQLEQQLESALKRVRSRKD---------QLLMEQIEEL 80 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccccccc----hHHHHHHHHhhhhhHHHHHHHHH---------HHHHHHHHHH
Q ss_pred HHHHHHHHHHHhHHHHHHHH
Q 013864 258 KELEERYWQEFNNFQFQLIA 277 (435)
Q Consensus 258 ~~eE~~~w~e~n~~q~qL~~ 277 (435)
...|...+.+.+.++.++.+
T Consensus 81 ~~ke~~l~~en~~L~~~~~e 100 (100)
T PF01486_consen 81 KKKERELEEENNQLRQKIEE 100 (100)
T ss_pred HHHHHHHHHHHHHHHHHhcC
No 479
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=44.16 E-value=1.3e+02 Score=25.71 Aligned_cols=61 Identities=21% Similarity=0.309 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 183 KEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAE 246 (435)
Q Consensus 183 ~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~e 246 (435)
+|++.+++....|..-|+.++..-....-..+-.+. +|+|...+...+...|++...+..|
T Consensus 5 ~eId~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~---lE~E~~~l~~~l~~~E~eL~~LrkE 65 (85)
T PF15188_consen 5 KEIDGLEEKLAQCRRRLEAVESRLRRRELSPEARRS---LEKELNELKEKLENNEKELKLLRKE 65 (85)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHcccCCChHHHHH---HHHHHHHHHHHhhccHHHHHHHHHh
No 480
>COG3334 Uncharacterized conserved protein [Function unknown]
Probab=44.01 E-value=2.7e+02 Score=27.10 Aligned_cols=70 Identities=33% Similarity=0.292 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 013864 212 EADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEV 291 (435)
Q Consensus 212 ee~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~~eE~~~w~e~n~~q~qL~~~~ee~~sl~~q~~~ 291 (435)
+.....-.+.+..+...+..++.+.+++.+.+++.++.|+.+..+++.+++ ++.-+...
T Consensus 58 ~k~~~~i~da~~dq~~~~q~e~~~~lk~~a~~~E~lk~lE~~kae~k~~~e------------------~re~~l~~--- 116 (192)
T COG3334 58 EKFCANIADAAADQLYALQKELLEKLKDLAEVNERLKALEKKKAELKDLEE------------------EREGILRS--- 116 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHH---
Q ss_pred HHHHHHHHhhc
Q 013864 292 SQAHLELLKRT 302 (435)
Q Consensus 292 ~~~qLdkLrkt 302 (435)
.+++.++|-++
T Consensus 117 ~qae~~klv~i 127 (192)
T COG3334 117 KQAEDGKLVKI 127 (192)
T ss_pred HHhhhhHHHHH
No 481
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=43.81 E-value=3.8e+02 Score=28.23 Aligned_cols=82 Identities=27% Similarity=0.302 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 013864 186 DDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKEL-ELKSKRFKELEERY 264 (435)
Q Consensus 186 e~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~l-e~e~~~L~~eE~~~ 264 (435)
+..+..+..+...+++-+.+.+ +..-+.-++.+.+|++.|++..+--..++.+ ++|...|++.-++.
T Consensus 322 et~eaKr~e~~~e~qrkEee~r------------qmFvqrvkekE~elke~Ekel~~kf~~lkr~h~eEk~kle~~rr~L 389 (406)
T KOG3859|consen 322 ETYEAKRNEFLGELQRKEEEMR------------QMFVQRVKEKEAELKEAEKELHEKFDRLKRLHQEEKKKLEEKRKQL 389 (406)
T ss_pred HHHHHHHHHHHHHHHHhHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhHHHHHHHHHH
Q 013864 265 WQEFNNFQFQLIAHQ 279 (435)
Q Consensus 265 w~e~n~~q~qL~~~~ 279 (435)
-.++++|+......+
T Consensus 390 eee~~~f~~rk~~~~ 404 (406)
T KOG3859|consen 390 EEEVNAFQRRKTAAE 404 (406)
T ss_pred HHHHHHHHHHHHHHh
No 482
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=43.79 E-value=1.8e+02 Score=29.08 Aligned_cols=74 Identities=15% Similarity=0.175 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 013864 229 LEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRT 302 (435)
Q Consensus 229 L~~eL~~lE~e~~~l~~el~~le~e~~~L~~eE~~~w~e~n~~q~qL~~~~ee~~sl~~q~~~~~~qLdkLrkt 302 (435)
....+..++.+.....+++..++......+....+.-...-.++.++...+.+...+++++..++.++++.++.
T Consensus 53 ~~~~~~~a~a~l~~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~R~~~L 126 (327)
T TIGR02971 53 RTAELDVARTQLDEAKARLAQVRAGAKKGEIAAQRAARAAAKLFKDVAAQQATLNRLEAELETAQREVDRYRSL 126 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 483
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=43.29 E-value=2.3e+02 Score=24.96 Aligned_cols=74 Identities=22% Similarity=0.272 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 013864 215 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSK 288 (435)
Q Consensus 215 l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~~eE~~~w~e~n~~q~qL~~~~ee~~sl~~q 288 (435)
+..|..+|...-.-|.+.+-+-+.....|..+|+.-+..+..++++-+.+=---..+......+++|.+...+.
T Consensus 3 la~eYsKLraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~~~~~~ 76 (102)
T PF10205_consen 3 LAQEYSKLRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELEESEQK 76 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
No 484
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=43.26 E-value=2.3e+02 Score=27.08 Aligned_cols=65 Identities=15% Similarity=0.264 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 013864 221 KIEEEERKLEAAIE-ETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKI 289 (435)
Q Consensus 221 ~Le~EE~~L~~eL~-~lE~e~~~l~~el~~le~e~~~L~~eE~~~w~e~n~~q~qL~~~~ee~~sl~~q~ 289 (435)
.+.+|...-...|. +++.-..+++.||++++.++..|+... .....++..-..++.|++...++|
T Consensus 102 QVqqeL~~tf~rL~~~Vd~~~~eL~~eI~~L~~~i~~le~~~----~~~k~LrnKa~~L~~eL~~F~~~y 167 (171)
T PF04799_consen 102 QVQQELSSTFARLCQQVDQTKNELEDEIKQLEKEIQRLEEIQ----SKSKTLRNKANWLESELERFQEQY 167 (171)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHh
No 485
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=43.04 E-value=6.7e+02 Score=30.19 Aligned_cols=125 Identities=15% Similarity=0.128 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 174 MRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELK 253 (435)
Q Consensus 174 ~d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e 253 (435)
+..|++.-..+++...+-++.|.+..=.+-.+-.......++.+-+..++.|-.++.+.+.....|....++-++.-.+.
T Consensus 1039 ~~el~~~~~~~~~~e~e~k~~hl~~~~~~l~kl~~eaq~~Q~k~LK~~~e~e~kElk~~l~kkr~e~ik~~~~~kdK~e~ 1118 (1189)
T KOG1265|consen 1039 TQELLEMRREQYEEEFELKEEHLKEQISLLRKLLSEAQTNQTKALKESLEKETKELKKKLDKKRMEDIKVDKVIKDKAER 1118 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccHHHH
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 013864 254 SKRFKELEERYWQEFNNFQFQLIAHQEERD-AISSKIEVSQAHLEL 298 (435)
Q Consensus 254 ~~~L~~eE~~~w~e~n~~q~qL~~~~ee~~-sl~~q~~~~~~qLdk 298 (435)
..+..+....+.+++=.-..+|.+.++.+. .|..+-.....||+.
T Consensus 1119 er~~rE~n~s~i~~~V~e~krL~~~~~k~~e~L~k~~~~~leql~e 1164 (1189)
T KOG1265|consen 1119 ERRKRELNSSNIKEFVEERKRLAEKQSKRQEQLVKKHLEVLEQLAE 1164 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 486
>PF15369 KIAA1328: Uncharacterised protein KIAA1328
Probab=42.97 E-value=3.7e+02 Score=28.27 Aligned_cols=105 Identities=16% Similarity=0.179 Sum_probs=0.0
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 013864 213 ADFLKEKLKI----EEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSK 288 (435)
Q Consensus 213 e~l~~e~~~L----e~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~~eE~~~w~e~n~~q~qL~~~~ee~~sl~~q 288 (435)
++|.+|+.++ |.-+.+|..+-+..|+...+|+++-.-+-.|.+.|..+=.+--....-+|.=|.+-++++.--.+.
T Consensus 11 ~~li~~la~~~~~~e~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~~~~~~~qyrecqell~lyq~ylseqq~kl~~s~~~ 90 (328)
T PF15369_consen 11 ANLIKELARVSEEKEVTEERLKAEQESFEKKIRQLEEQNELIIKEREDLQQQYRECQELLSLYQKYLSEQQEKLTMSLSE 90 (328)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Q ss_pred HHHHHHHHHHHhhcccCCCceeeeecCCe
Q 013864 289 IEVSQAHLELLKRTNVLNDAFPIWHDGEF 317 (435)
Q Consensus 289 ~~~~~~qLdkLrktNV~Nd~F~I~hdG~f 317 (435)
+..+..+=..+....-.-..=...-||.|
T Consensus 91 l~~~~~~~q~vsskKs~~qsss~eLDGSY 119 (328)
T PF15369_consen 91 LSAARMKEQQVSSKKSPLQSSSSELDGSY 119 (328)
T ss_pred hhhhhhhhccCCcCCCCCCCCCCCCCcch
No 487
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=42.90 E-value=56 Score=28.39 Aligned_cols=32 Identities=16% Similarity=0.265 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 227 RKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (435)
Q Consensus 227 ~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~ 258 (435)
.++.+++.+++++.+++.++-.+|+.+.+.|+
T Consensus 30 ~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~ 61 (105)
T PRK00888 30 WRVNDQVAAQQQTNAKLKARNDQLFAEIDDLK 61 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 488
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=42.86 E-value=2.1e+02 Score=24.30 Aligned_cols=79 Identities=23% Similarity=0.208 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013864 222 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLK 300 (435)
Q Consensus 222 Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~~eE~~~w~e~n~~q~qL~~~~ee~~sl~~q~~~~~~qLdkLr 300 (435)
|..|.-++.++.+++.......-.++..++....++..+=.+.=+.|-+..+..-.+..|...+..++.-.+.-++.|+
T Consensus 1 L~~EL~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~ 79 (96)
T PF08647_consen 1 LQTELVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLK 79 (96)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHH
No 489
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=42.73 E-value=1.2e+02 Score=31.96 Aligned_cols=63 Identities=11% Similarity=0.100 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCC
Q 013864 232 AIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLN 306 (435)
Q Consensus 232 eL~~lE~e~~~l~~el~~le~e~~~L~~eE~~~w~e~n~~q~qL~~~~ee~~sl~~q~~~~~~qLdkLrktNV~N 306 (435)
|.-.|..|.+.|.+|.++|..|.++| +.| +--....+...-++.+++.+..-+++.|+.+.|+
T Consensus 33 e~~aLr~EN~~LKkEN~~Lk~eVerL-E~e-----------~l~s~V~E~vet~dv~~d~i~Kimnk~Re~vlfq 95 (420)
T PF07407_consen 33 ENFALRMENHSLKKENNDLKIEVERL-ENE-----------MLRSHVCEDVETNDVIYDKIVKIMNKMRELVLFQ 95 (420)
T ss_pred hhhhHHHHhHHHHHHHHHHHHHHHHH-HHH-----------hhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhc
No 490
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=42.66 E-value=37 Score=29.58 Aligned_cols=79 Identities=19% Similarity=0.194 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 013864 224 EEERKLEAAIEETEKQNAEVNAELKELELKS-KRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRT 302 (435)
Q Consensus 224 ~EE~~L~~eL~~lE~e~~~l~~el~~le~e~-~~L~~eE~~~w~e~n~~q~qL~~~~ee~~sl~~q~~~~~~qLdkLrkt 302 (435)
++...-...-..+++++..++.|+++|...+ .+-+..=..=-++...++.....++.++.-....++..+.+|..|+..
T Consensus 1 ~~l~~e~~~r~~ae~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~k~~~le~~l~e~~~~l~~lq~qL~~LK~v 80 (100)
T PF06428_consen 1 KELEEERERREEAEQEKEQIESELEELTASLFEEANKMVADARRERAALEEKNEQLEKQLKEKEALLESLQAQLKELKTV 80 (100)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHCHCCCHCTSSSSHHHHC
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 491
>PHA03161 hypothetical protein; Provisional
Probab=42.66 E-value=92 Score=29.20 Aligned_cols=87 Identities=16% Similarity=0.227 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCce
Q 013864 230 EAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAF 309 (435)
Q Consensus 230 ~~eL~~lE~e~~~l~~el~~le~e~~~L~~eE~~~w~e~n~~q~qL~~~~ee~~sl~~q~~~~~~qLdkLrktNV~Nd~F 309 (435)
.....+++.-...++.+|+..+.|..-|......=....-+++-...++.++.+--...+...+..
T Consensus 53 ~~~~~~i~~~v~~l~~~I~~k~kE~~~L~~fd~kkl~~~E~L~drv~eLkeel~~ELe~l~~~q~~-------------- 118 (150)
T PHA03161 53 LKKQKSIEGMLQAVDLSIQEKKKELSLLKAFDRHKLSAAEDLQDKILELKEDIHFEIEALNHGQPS-------------- 118 (150)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc--------------
Q ss_pred eeeecCCee-------eeccccCCCCCCCC
Q 013864 310 PIWHDGEFG-------TINNFRLGRLPKIP 332 (435)
Q Consensus 310 ~I~hdG~fG-------TINGlRLGrlp~~~ 332 (435)
.|+...| ||=..||+++|.+|
T Consensus 119 --~~~~~~~~~~~~~dtI~~WRLE~lPrcP 146 (150)
T PHA03161 119 --SQEEENSSENSIPDTIMQWRIEALPRVP 146 (150)
T ss_pred --cCCCCCCccCchhhHHHHHHHhhCCCCC
No 492
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=42.55 E-value=2.3e+02 Score=24.59 Aligned_cols=82 Identities=20% Similarity=0.227 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCH--------------------------------HHHHHHHHHH
Q 013864 175 RVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSE--------------------------------ADFLKEKLKI 222 (435)
Q Consensus 175 d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~e--------------------------------e~l~~e~~~L 222 (435)
..-++.|..++..+......|...++.|+.-......+ .++.+.+.-+
T Consensus 12 ~~~i~~l~~~i~~l~~~i~e~~~~~~~L~~l~~~~~~~~lv~lg~~~~v~~~v~~~~~v~v~iG~g~~vE~~~~eA~~~l 91 (126)
T TIGR00293 12 QQQVESLQAQIAALRALIAELETAIETLEDLKGAEGKETLVPVGAGSFVKAKVKDTDKVLVSIGSGYYVEKDAEEAIEFL 91 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCeEEEEcCCCeEEEEEeCCCCEEEEEcCCCEEEEecHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 223 EEEERKLEAAIEETEKQNAEVNAELKELELKSKR 256 (435)
Q Consensus 223 e~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~ 256 (435)
+.....|.+.++.++++...+.+++..+...+..
T Consensus 92 ~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~~l~~ 125 (126)
T TIGR00293 92 KKRIEELEKAIEKLQEALAELASRAQQLEQEAQQ 125 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 493
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=42.52 E-value=5.1e+02 Score=28.61 Aligned_cols=111 Identities=17% Similarity=0.268 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 178 SDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 257 (435)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L 257 (435)
...+..++.....+...+......+.. +..++..+..+...+..++.+++...+.... ..+++...|
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~l~~~~~~~~~~~~~~~~l~~~le~~~~---~~~ek~~~l 104 (475)
T PRK10361 38 REEMVAELSAAKQQITQSEHWRAECEL----------LNNEVRSLQSINTSLEADLREVTTRMEAAQQ---HADDKIRQM 104 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHhh
Q 013864 258 KELEERYWQEFNNFQFQLIAHQEER------DAISSKIEVSQAHLELLKR 301 (435)
Q Consensus 258 ~~eE~~~w~e~n~~q~qL~~~~ee~------~sl~~q~~~~~~qLdkLrk 301 (435)
++.++++-.+|.++-.+..+...+. .++..-+.=.+.+|+..++
T Consensus 105 ~~~~~~L~~~F~~LA~~ile~k~~~f~~~~~~~l~~ll~Pl~e~l~~f~~ 154 (475)
T PRK10361 105 INSEQRLSEQFENLANRIFEHSNRRVDEQNRQSLNSLLSPLREQLDGFRR 154 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
No 494
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=42.43 E-value=5.7e+02 Score=29.19 Aligned_cols=116 Identities=11% Similarity=0.156 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 178 SDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 257 (435)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L 257 (435)
++.-++.+..+++|+..-..-+.+........ .-.++.+....|-.-+....+=..++++..+.+..+++....++..|
T Consensus 244 Le~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~-~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~l 322 (629)
T KOG0963|consen 244 LEDAQQRIVFLEREVEQLREQLAKANSSKKLA-KIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHKAQISAL 322 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhc-cCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 013864 258 KELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRT 302 (435)
Q Consensus 258 ~~eE~~~w~e~n~~q~qL~~~~ee~~sl~~q~~~~~~qLdkLrkt 302 (435)
+.+-..+-.+.+.++.+|...-+ |+-....|--|+..
T Consensus 323 e~~l~~~~~~leel~~kL~~~sD--------YeeIK~ELsiLk~i 359 (629)
T KOG0963|consen 323 EKELKAKISELEELKEKLNSRSD--------YEEIKKELSILKAI 359 (629)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcc--------HHHHHHHHHHHHHh
No 495
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=42.28 E-value=8.4 Score=44.63 Aligned_cols=118 Identities=19% Similarity=0.262 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 178 SDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 257 (435)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L 257 (435)
+..|..+++.+.+.+..-..--..|..+. +++..++..+.......+.....+|.+..++...+.+.+.....+
T Consensus 133 ~~eL~eqle~lqk~k~~lEK~k~~l~~e~------~dL~~~l~~~~k~k~~~Ek~~K~lE~qL~El~~klee~er~~~el 206 (859)
T PF01576_consen 133 VAELNEQLEQLQKQKAKLEKEKSQLEAEL------DDLQAQLDSLQKAKQEAEKKRKQLEAQLNELQAKLEESERQRNEL 206 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHH------HHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013864 258 KELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 301 (435)
Q Consensus 258 ~~eE~~~w~e~n~~q~qL~~~~ee~~sl~~q~~~~~~qLdkLrk 301 (435)
...-.++..+.+.+..++.+.+.....+.........+|+-+++
T Consensus 207 ~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~ 250 (859)
T PF01576_consen 207 TEQKAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLEELKR 250 (859)
T ss_dssp --------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
No 496
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=42.22 E-value=57 Score=27.45 Aligned_cols=35 Identities=26% Similarity=0.365 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 224 EEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (435)
Q Consensus 224 ~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~ 258 (435)
.+..+|.++|+.++++.+.+..++..++.+.+-|+
T Consensus 70 ~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~L~ 104 (104)
T PF13600_consen 70 PELKELEEELEALEDELAALQDEIQALEAQIAFLQ 104 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
No 497
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=42.21 E-value=4.3e+02 Score=27.65 Aligned_cols=91 Identities=9% Similarity=-0.028 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHH
Q 013864 210 LSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNN---FQFQLIAHQEERDAIS 286 (435)
Q Consensus 210 ~~ee~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~~eE~~~w~e~n~---~q~qL~~~~ee~~sl~ 286 (435)
++..++..++.+.+.+......++..+..+.+...+++...+.+....+..-+++-..+.. -+.++...+.+.....
T Consensus 92 LD~~~~~~~l~~A~a~l~~a~~~~~~~~~~~~~~~a~l~~a~a~l~~a~~~~~R~~~L~~~g~iS~~~ld~a~~~~~~a~ 171 (390)
T PRK15136 92 LDPTDAEQAFEKAKTALANSVRQTHQLMINSKQYQANIELQKTALAQAQSDLNRRVPLGNANLIGREELQHARDAVASAQ 171 (390)
T ss_pred ECcHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHh
Q 013864 287 SKIEVSQAHLELLK 300 (435)
Q Consensus 287 ~q~~~~~~qLdkLr 300 (435)
++++.++.++..++
T Consensus 172 a~l~~a~~~l~~~~ 185 (390)
T PRK15136 172 AQLDVAIQQYNANQ 185 (390)
T ss_pred HHHHHHHHHHHHHH
No 498
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=42.03 E-value=1.6e+02 Score=27.99 Aligned_cols=87 Identities=9% Similarity=0.037 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCc-e
Q 013864 231 AAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDA-F 309 (435)
Q Consensus 231 ~eL~~lE~e~~~l~~el~~le~e~~~L~~eE~~~w~e~n~~q~qL~~~~ee~~sl~~q~~~~~~qLdkLrktNV~Nd~-F 309 (435)
.++..++.+.++.++++...+.+.++.+.+-++-+-.-.++... +.+...+++++..++.+|+.++...-...+ .
T Consensus 16 ~~~~~~~a~l~~a~~~l~~a~~~~~r~~~L~~~~~~s~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i 91 (265)
T TIGR00999 16 PELAKMAAELKVAQKRVELARKTYEREKKLFEQGVIPRQEFESA----EYALEEAQAEVQAAKSELRSAREAKDGSYVEV 91 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHH----HHHHHHHHHHHHHHHHHHHhcCCccCCCeEEE
Q ss_pred eeeecCCeeeec
Q 013864 310 PIWHDGEFGTIN 321 (435)
Q Consensus 310 ~I~hdG~fGTIN 321 (435)
.=.+||....++
T Consensus 92 ~AP~dG~V~~~~ 103 (265)
T TIGR00999 92 RSPFDGYITQKS 103 (265)
T ss_pred ECCCCeEEEEEE
No 499
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=41.97 E-value=46 Score=26.43 Aligned_cols=31 Identities=16% Similarity=0.263 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 229 LEAAIEETEKQNAEVNAELKELELKSKRFKE 259 (435)
Q Consensus 229 L~~eL~~lE~e~~~l~~el~~le~e~~~L~~ 259 (435)
+++.|..||+...+.+++....+.+....++
T Consensus 30 iEqRLa~LE~rL~~ae~ra~~ae~~~~~~kq 60 (60)
T PF11471_consen 30 IEQRLAALEQRLQAAEQRAQAAEARAKQAKQ 60 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 500
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=41.78 E-value=2.7e+02 Score=32.96 Aligned_cols=117 Identities=22% Similarity=0.301 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 178 SDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 257 (435)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L 257 (435)
.+.+++=--+...+.+--.+-+..|+.....-..++-+....+.+|.+-+.+..+++++.++.+++..|+++++.++-+.
T Consensus 956 ~Ed~kkLhaE~daeLe~~~ael~eleqk~le~~eDea~aRh~kefE~~mrdhrselEe~kKe~eaiineiee~eaeIiQe 1035 (1424)
T KOG4572|consen 956 EEDKKKLHAEIDAELEKEFAELIELEQKALECKEDEAFARHEKEFEIEMRDHRSELEEKKKELEAIINEIEELEAEIIQE 1035 (1424)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013864 258 KELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLK 300 (435)
Q Consensus 258 ~~eE~~~w~e~n~~q~qL~~~~ee~~sl~~q~~~~~~qLdkLr 300 (435)
.+ .+.-..++......+-+..++..+..-.+..|+.+
T Consensus 1036 kE------~el~e~efka~d~Sd~r~kie~efAa~eaemdeik 1072 (1424)
T KOG4572|consen 1036 KE------GELIEDEFKALDESDPRAKIEDEFAAIEAEMDEIK 1072 (1424)
T ss_pred cc------chHHHHHhhhccccCcchhHHHHHHHHHhhhhhhh
Done!