Query 013864
Match_columns 435
No_of_seqs 149 out of 240
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 18:32:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013864.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013864hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ddp_A Beclin-1; ECD, autophag 100.0 3.1E-64 1.1E-68 475.3 13.2 150 277-435 2-155 (210)
2 3vp7_A Vacuolar protein sortin 100.0 3.4E-56 1.2E-60 422.8 11.1 133 302-435 1-174 (220)
3 3q8t_A Beclin-1; autophagy, AT 99.8 9.7E-18 3.3E-22 141.2 15.0 90 213-302 7-96 (96)
4 2p1l_B Beclin 1; apoptosis, au 98.4 6E-08 2E-12 66.0 1.1 27 142-168 5-31 (31)
5 1c1g_A Tropomyosin; contractIl 96.6 0.2 6.8E-06 44.9 18.3 20 181-200 4-23 (284)
6 2v71_A Nuclear distribution pr 96.5 0.31 1.1E-05 45.4 19.6 60 176-244 17-76 (189)
7 1c1g_A Tropomyosin; contractIl 96.2 0.56 1.9E-05 41.9 19.1 10 184-193 28-37 (284)
8 2efr_A General control protein 96.0 0.82 2.8E-05 41.4 20.1 83 220-302 73-155 (155)
9 3q8t_A Beclin-1; autophagy, AT 95.9 0.38 1.3E-05 40.1 14.9 87 192-291 6-92 (96)
10 3oja_B Anopheles plasmodium-re 95.6 0.15 5E-06 53.0 14.0 29 220-248 512-540 (597)
11 3oja_B Anopheles plasmodium-re 95.4 0.26 8.8E-06 51.2 14.8 39 263-301 527-565 (597)
12 2dfs_A Myosin-5A; myosin-V, in 95.3 0.13 4.4E-06 58.8 13.4 24 230-253 983-1006(1080)
13 3na7_A HP0958; flagellar bioge 95.2 1.2 4E-05 42.4 17.9 11 366-376 222-232 (256)
14 3na7_A HP0958; flagellar bioge 95.0 1.9 6.5E-05 41.0 18.6 35 216-250 96-130 (256)
15 2v71_A Nuclear distribution pr 95.0 1.7 5.7E-05 40.5 17.4 110 188-300 8-125 (189)
16 3hnw_A Uncharacterized protein 94.8 0.38 1.3E-05 42.6 12.2 68 215-282 66-133 (138)
17 3vkg_A Dynein heavy chain, cyt 94.6 0.75 2.5E-05 58.0 18.0 68 229-296 2012-2079(3245)
18 3o0z_A RHO-associated protein 94.0 3.7 0.00013 37.6 17.7 55 243-297 95-153 (168)
19 2efr_A General control protein 93.3 4.4 0.00015 36.5 17.3 32 266-297 98-129 (155)
20 3vkg_A Dynein heavy chain, cyt 91.9 2.6 8.7E-05 53.4 16.7 34 171-204 1898-1931(3245)
21 3oja_A Leucine-rich immune mol 91.3 3.3 0.00011 42.0 14.5 42 237-278 427-468 (487)
22 3s4r_A Vimentin; alpha-helix, 90.5 6.4 0.00022 32.4 13.0 69 231-301 23-91 (93)
23 2v4h_A NF-kappa-B essential mo 90.5 4.9 0.00017 34.4 12.3 22 278-299 88-109 (110)
24 3bas_A Myosin heavy chain, str 90.2 6.2 0.00021 32.1 12.4 68 217-298 14-81 (89)
25 1ic2_A Tropomyosin alpha chain 89.8 6.5 0.00022 31.3 12.6 35 267-301 42-76 (81)
26 3hnw_A Uncharacterized protein 89.4 4.3 0.00015 35.7 11.6 39 222-260 66-104 (138)
27 1l8d_A DNA double-strand break 89.4 8 0.00027 31.8 13.7 30 267-296 72-101 (112)
28 3bas_A Myosin heavy chain, str 88.1 9.4 0.00032 31.0 12.3 37 217-253 21-57 (89)
29 3a7p_A Autophagy protein 16; c 88.0 9.1 0.00031 34.5 12.8 21 232-252 69-89 (152)
30 3iox_A AGI/II, PA; alpha helix 87.3 7.4 0.00025 41.0 13.5 95 189-288 8-102 (497)
31 3u1c_A Tropomyosin alpha-1 cha 87.1 12 0.0004 31.1 14.7 23 178-200 4-26 (101)
32 2ocy_A RAB guanine nucleotide 87.0 17 0.00058 32.7 16.5 32 270-301 112-143 (154)
33 3u59_A Tropomyosin beta chain; 86.8 12 0.00041 30.8 14.5 18 179-196 5-22 (101)
34 3oja_A Leucine-rich immune mol 85.6 26 0.00088 35.4 16.4 22 181-202 358-379 (487)
35 3ghg_A Fibrinogen alpha chain; 85.0 8.1 0.00028 41.0 12.4 16 344-359 181-196 (562)
36 3nmd_A CGMP dependent protein 85.0 3 0.0001 33.3 7.1 45 213-257 22-66 (72)
37 3ghg_A Fibrinogen alpha chain; 84.3 22 0.00076 37.8 15.3 10 163-172 29-38 (562)
38 2jee_A YIIU; FTSZ, septum, coi 84.1 14 0.00047 30.1 10.8 19 232-250 28-46 (81)
39 2zqm_A Prefoldin beta subunit 83.9 7.6 0.00026 32.0 9.6 39 217-255 70-108 (117)
40 1l8d_A DNA double-strand break 82.9 18 0.00062 29.6 11.6 34 220-253 67-100 (112)
41 3mq9_A Bone marrow stromal ant 82.7 12 0.0004 37.8 12.4 26 231-256 443-468 (471)
42 3s9g_A Protein hexim1; cyclin 82.4 21 0.00073 30.1 11.8 63 194-261 18-81 (104)
43 3swk_A Vimentin; cytoskeleton, 81.9 19 0.00065 29.1 12.7 35 267-301 50-84 (86)
44 1deq_A Fibrinogen (alpha chain 81.7 39 0.0013 34.6 15.4 41 289-336 181-222 (390)
45 3a7p_A Autophagy protein 16; c 81.7 21 0.00073 32.1 12.2 61 218-285 69-129 (152)
46 3ol1_A Vimentin; structural ge 81.5 24 0.00081 30.0 13.8 28 176-203 20-47 (119)
47 1ic2_A Tropomyosin alpha chain 81.3 15 0.00052 29.1 10.1 20 181-200 4-23 (81)
48 3tnu_B Keratin, type II cytosk 80.5 26 0.00088 29.9 12.1 34 218-251 37-70 (129)
49 1ci6_A Transcription factor AT 80.2 6.1 0.00021 30.2 7.1 39 221-259 20-58 (63)
50 3cvf_A Homer-3, homer protein 79.9 15 0.00051 29.7 9.5 25 228-252 10-34 (79)
51 3tnu_A Keratin, type I cytoske 78.7 23 0.00079 30.4 11.2 30 221-250 42-71 (131)
52 3uux_B Mitochondrial division 77.9 22 0.00075 34.2 11.6 74 220-293 152-225 (242)
53 1fxk_A Prefoldin; archaeal pro 77.2 12 0.0004 30.4 8.5 37 218-254 66-102 (107)
54 3mq9_A Bone marrow stromal ant 77.1 39 0.0013 33.9 14.1 69 229-301 402-471 (471)
55 3ajw_A Flagellar FLIJ protein; 75.8 35 0.0012 28.8 13.2 55 218-272 75-129 (150)
56 1m1j_C Fibrinogen gamma chain; 75.5 41 0.0014 34.6 13.7 15 331-345 204-218 (409)
57 2b5u_A Colicin E3; high resolu 75.4 37 0.0013 35.9 13.4 25 233-257 316-340 (551)
58 3cvf_A Homer-3, homer protein 74.8 27 0.00092 28.2 9.7 59 216-274 12-70 (79)
59 1wt6_A Myotonin-protein kinase 74.4 13 0.00043 30.3 7.6 41 217-257 31-71 (81)
60 2w83_C C-JUN-amino-terminal ki 73.9 27 0.00093 28.1 9.3 43 213-255 33-75 (77)
61 3u1c_A Tropomyosin alpha-1 cha 73.8 37 0.0013 28.0 15.0 69 228-296 27-95 (101)
62 3cve_A Homer protein homolog 1 73.5 32 0.0011 27.3 11.1 39 219-257 9-47 (72)
63 2oto_A M protein; helical coil 72.9 48 0.0017 29.0 14.4 58 180-243 26-83 (155)
64 3fpp_A Macrolide-specific effl 72.6 15 0.00052 35.1 9.3 28 273-300 121-148 (341)
65 3viq_B Mating-type switching p 72.6 11 0.00037 30.9 6.9 45 228-272 5-54 (85)
66 2ve7_A Kinetochore protein HEC 72.6 12 0.00041 36.9 8.7 25 230-254 184-208 (315)
67 4dk0_A Putative MACA; alpha-ha 72.3 20 0.00068 34.6 10.1 30 272-301 121-150 (369)
68 3opc_A Uncharacterized protein 72.3 47 0.0016 28.6 12.5 111 188-301 13-131 (154)
69 3u59_A Tropomyosin beta chain; 72.1 40 0.0014 27.7 15.3 70 228-297 27-96 (101)
70 3iv1_A Tumor susceptibility ge 71.7 37 0.0013 27.3 9.8 36 223-258 38-73 (78)
71 3mq7_A Bone marrow stromal ant 71.3 50 0.0017 28.6 13.2 21 283-303 81-101 (121)
72 1hjb_A Ccaat/enhancer binding 71.2 20 0.00068 29.3 8.3 39 221-259 33-71 (87)
73 2i1j_A Moesin; FERM, coiled-co 70.6 1.8 6E-05 46.2 2.3 9 178-186 302-310 (575)
74 2v4h_A NF-kappa-B essential mo 70.3 51 0.0017 28.2 12.7 69 231-303 38-106 (110)
75 2zqm_A Prefoldin beta subunit 69.8 44 0.0015 27.2 11.1 15 283-297 87-101 (117)
76 2i1j_A Moesin; FERM, coiled-co 68.5 4.1 0.00014 43.4 4.6 17 187-203 332-348 (575)
77 2avr_X Adhesion A; antiparalle 68.1 29 0.001 30.0 9.0 19 280-298 71-89 (119)
78 2p22_A Suppressor protein STP2 67.8 57 0.0019 29.8 11.4 80 216-295 48-137 (174)
79 3ibp_A Chromosome partition pr 67.1 51 0.0017 32.7 11.6 74 178-251 26-103 (302)
80 1t2k_D Cyclic-AMP-dependent tr 67.0 21 0.00071 26.8 7.1 36 223-258 21-56 (61)
81 3o0z_A RHO-associated protein 66.6 77 0.0026 28.9 18.5 67 180-252 10-76 (168)
82 4etp_A Kinesin-like protein KA 66.2 17 0.00059 36.9 8.5 14 398-411 324-337 (403)
83 1wle_A Seryl-tRNA synthetase; 66.1 35 0.0012 35.9 11.0 38 216-253 69-106 (501)
84 2v66_B Nuclear distribution pr 65.4 64 0.0022 27.5 14.8 84 179-267 6-89 (111)
85 3ol1_A Vimentin; structural ge 65.0 64 0.0022 27.3 16.1 9 195-203 18-26 (119)
86 4emc_A Monopolin complex subun 64.7 26 0.00088 32.6 8.5 32 295-326 80-121 (190)
87 4etp_A Kinesin-like protein KA 64.3 23 0.0008 35.9 9.1 23 231-253 10-32 (403)
88 2fup_A Hypothetical protein PA 64.2 30 0.001 29.5 8.6 114 187-303 11-134 (157)
89 3lss_A Seryl-tRNA synthetase; 64.0 31 0.0011 36.1 10.1 37 216-252 36-72 (484)
90 1ik9_A DNA repair protein XRCC 63.2 54 0.0019 30.6 10.7 8 151-158 122-129 (213)
91 2dq0_A Seryl-tRNA synthetase; 63.2 30 0.001 35.7 9.7 91 214-313 28-118 (455)
92 2k48_A Nucleoprotein; viral pr 62.7 51 0.0018 28.0 9.2 18 280-297 82-99 (107)
93 3jsv_C NF-kappa-B essential mo 62.0 68 0.0023 26.7 10.3 22 279-300 67-88 (94)
94 3qne_A Seryl-tRNA synthetase, 61.8 22 0.00075 37.3 8.4 88 216-314 32-121 (485)
95 1gu4_A CAAT/enhancer binding p 61.5 28 0.00097 27.8 7.2 39 220-258 32-70 (78)
96 3nmd_A CGMP dependent protein 61.2 33 0.0011 27.2 7.4 13 289-301 56-68 (72)
97 3cve_A Homer protein homolog 1 60.9 61 0.0021 25.7 11.1 65 228-299 4-68 (72)
98 3swk_A Vimentin; cytoskeleton, 60.9 64 0.0022 26.0 10.4 19 230-248 6-24 (86)
99 2wt7_A Proto-oncogene protein 60.8 25 0.00086 26.6 6.6 34 225-258 24-57 (63)
100 1go4_E MAD1 (mitotic arrest de 60.5 38 0.0013 28.4 8.1 27 177-203 13-39 (100)
101 2l5g_B Putative uncharacterize 60.4 21 0.00073 25.6 5.5 29 229-257 7-35 (42)
102 3u06_A Protein claret segregat 60.2 23 0.00079 36.2 8.1 30 222-251 8-37 (412)
103 2e7s_A RAB guanine nucleotide 59.7 49 0.0017 29.2 9.0 15 286-300 116-130 (135)
104 3fpp_A Macrolide-specific effl 59.5 45 0.0015 31.7 9.7 30 268-297 123-152 (341)
105 3ljm_A Coil Ser L9C; de novo d 58.7 13 0.00046 24.4 3.9 25 233-257 3-27 (31)
106 2pms_C Pneumococcal surface pr 58.6 66 0.0023 28.1 9.5 112 180-299 10-122 (125)
107 1fxk_C Protein (prefoldin); ar 58.1 83 0.0028 26.4 10.2 82 176-257 15-128 (133)
108 3qh9_A Liprin-beta-2; coiled-c 57.5 76 0.0026 25.8 10.8 38 221-258 23-60 (81)
109 4dzn_A Coiled-coil peptide CC- 57.2 23 0.00077 23.7 4.8 21 237-257 8-28 (33)
110 1uix_A RHO-associated kinase; 57.1 71 0.0024 25.3 10.6 46 230-275 3-48 (71)
111 4h22_A Leucine-rich repeat fli 56.6 90 0.0031 26.4 10.8 24 227-250 33-56 (103)
112 4dk0_A Putative MACA; alpha-ha 56.3 28 0.00095 33.5 7.7 32 267-298 123-154 (369)
113 3tnu_B Keratin, type II cytosk 56.2 93 0.0032 26.4 13.0 29 223-251 35-63 (129)
114 3mq7_A Bone marrow stromal ant 56.1 1E+02 0.0034 26.7 13.5 29 230-258 70-98 (121)
115 3etw_A Adhesin A; antiparallel 55.1 68 0.0023 27.7 9.0 14 284-297 75-88 (119)
116 2xnx_M M protein, M1-BC1; cell 55.0 79 0.0027 28.2 9.6 20 289-308 96-115 (146)
117 3ter_A Mammalian stromal inter 55.0 65 0.0022 28.5 9.0 44 271-314 43-87 (136)
118 2yy0_A C-MYC-binding protein; 54.6 21 0.00072 26.5 5.0 28 220-247 22-49 (53)
119 1go4_E MAD1 (mitotic arrest de 54.5 22 0.00077 29.9 5.7 32 225-256 13-44 (100)
120 1jnm_A Proto-oncogene C-JUN; B 53.3 17 0.00058 27.4 4.4 35 224-258 22-56 (62)
121 2aze_B Transcription factor E2 52.1 28 0.00094 29.3 6.0 34 226-259 8-41 (106)
122 2lw1_A ABC transporter ATP-bin 52.1 88 0.003 24.9 9.6 21 218-238 23-43 (89)
123 2oto_A M protein; helical coil 51.4 1.2E+02 0.0042 26.4 18.6 20 181-200 34-53 (155)
124 1ci6_A Transcription factor AT 50.2 45 0.0015 25.3 6.4 29 216-244 29-57 (63)
125 3qne_A Seryl-tRNA synthetase, 49.9 83 0.0029 32.9 10.4 24 225-248 79-102 (485)
126 1gmj_A ATPase inhibitor; coile 49.4 78 0.0027 25.8 7.9 9 242-250 62-70 (84)
127 2dq0_A Seryl-tRNA synthetase; 48.9 93 0.0032 32.0 10.6 26 224-249 76-101 (455)
128 1s1c_X RHO-associated, coiled- 48.9 98 0.0033 24.5 9.9 35 228-262 3-37 (71)
129 3u06_A Protein claret segregat 48.4 46 0.0016 33.9 8.1 34 225-258 4-37 (412)
130 2f1m_A Acriflavine resistance 48.0 42 0.0014 31.0 7.2 22 276-297 108-129 (277)
131 1ses_A Seryl-tRNA synthetase; 47.8 46 0.0016 33.9 8.0 34 216-249 27-60 (421)
132 4e61_A Protein BIM1; EB1-like 47.7 1.3E+02 0.0044 25.5 11.3 43 230-272 10-52 (106)
133 1a93_B MAX protein, coiled coi 47.6 28 0.00095 24.0 4.2 25 227-251 10-34 (34)
134 1x79_B RAB GTPase binding effe 47.4 1.3E+02 0.0046 25.6 12.0 37 256-292 60-96 (112)
135 1deq_A Fibrinogen (alpha chain 46.7 2E+02 0.0069 29.4 12.2 18 344-361 184-201 (390)
136 2lw1_A ABC transporter ATP-bin 46.6 81 0.0028 25.1 7.8 18 223-240 62-79 (89)
137 1yke_B RNA polymerase II holoe 45.8 1.4E+02 0.0049 26.4 10.0 31 211-241 86-116 (151)
138 1ses_A Seryl-tRNA synthetase; 45.6 1.2E+02 0.004 30.9 10.6 29 175-204 28-56 (421)
139 1hjb_A Ccaat/enhancer binding 45.4 40 0.0014 27.5 5.8 36 214-249 40-75 (87)
140 3a2a_A Voltage-gated hydrogen 45.3 77 0.0026 24.1 6.7 35 218-252 12-46 (58)
141 3ra3_B P2F; coiled coil domain 45.2 18 0.00061 23.4 2.8 21 237-257 6-26 (28)
142 3jsv_C NF-kappa-B essential mo 45.0 1.3E+02 0.0046 24.9 11.1 21 282-302 63-83 (94)
143 1nlw_A MAD protein, MAX dimeri 44.3 28 0.00096 27.7 4.6 31 219-249 49-79 (80)
144 1x79_B RAB GTPase binding effe 44.3 1.5E+02 0.0051 25.3 11.9 8 295-302 92-99 (112)
145 1lwu_C Fibrinogen gamma chain; 44.3 66 0.0023 32.0 8.3 15 331-345 126-140 (323)
146 2eqb_B RAB guanine nucleotide 44.2 1.4E+02 0.0048 24.9 13.3 20 181-200 10-29 (97)
147 1m1j_B Fibrinogen beta chain; 43.0 3.1E+02 0.011 28.6 15.2 27 178-204 88-114 (464)
148 2qyw_A Vesicle transport throu 42.2 1.4E+02 0.0049 24.4 10.1 27 231-257 49-75 (102)
149 1ykh_B RNA polymerase II holoe 42.1 1.7E+02 0.0057 25.2 10.4 32 211-242 86-117 (132)
150 2b9c_A Striated-muscle alpha t 42.0 1.8E+02 0.0062 25.6 13.0 23 181-203 22-44 (147)
151 2wt7_A Proto-oncogene protein 41.8 72 0.0025 24.0 6.4 24 220-243 33-56 (63)
152 2yy0_A C-MYC-binding protein; 41.8 44 0.0015 24.8 5.0 22 217-238 26-47 (53)
153 1m1j_B Fibrinogen beta chain; 41.7 3.2E+02 0.011 28.4 17.3 16 330-345 266-281 (464)
154 1f5n_A Interferon-induced guan 41.6 3.5E+02 0.012 28.8 19.3 16 287-302 567-582 (592)
155 4fi5_A Nucleoprotein; structur 41.6 1.4E+02 0.0049 25.5 8.7 30 210-239 22-51 (113)
156 1t2k_D Cyclic-AMP-dependent tr 41.5 65 0.0022 24.0 6.0 24 220-243 32-55 (61)
157 1nkp_B MAX protein, MYC proto- 41.5 29 0.00098 27.3 4.2 30 220-249 50-79 (83)
158 1nkp_A C-MYC, MYC proto-oncoge 41.0 38 0.0013 27.3 4.9 32 219-250 54-85 (88)
159 3onj_A T-snare VTI1; helix, HA 40.9 1.4E+02 0.0049 24.1 10.5 27 231-257 34-60 (97)
160 2eqb_B RAB guanine nucleotide 40.6 1.6E+02 0.0055 24.6 14.5 30 224-253 26-55 (97)
161 2e7s_A RAB guanine nucleotide 39.7 37 0.0013 30.0 5.0 16 181-196 20-35 (135)
162 4dzn_A Coiled-coil peptide CC- 39.1 65 0.0022 21.5 4.8 22 229-250 7-28 (33)
163 3tkl_B LIDA protein, substrate 39.0 62 0.0021 30.9 6.7 46 177-222 43-90 (267)
164 1g6u_A Domain swapped dimer; d 38.9 1E+02 0.0036 22.0 6.8 21 227-247 23-43 (48)
165 2ykt_A Brain-specific angiogen 38.9 2.6E+02 0.0089 26.5 15.4 111 179-303 39-151 (253)
166 2dq3_A Seryl-tRNA synthetase; 38.2 17 0.00059 37.1 3.1 91 214-313 27-117 (425)
167 2ic6_A Nucleocapsid protein; h 38.0 1.6E+02 0.0054 23.7 8.7 18 280-297 52-69 (78)
168 3m9b_A Proteasome-associated A 37.9 38 0.0013 32.8 5.2 23 231-253 61-83 (251)
169 1t3j_A Mitofusin 1; coiled coi 37.6 1.6E+02 0.0053 24.6 8.2 10 246-255 55-64 (96)
170 1gmj_A ATPase inhibitor; coile 37.0 1E+02 0.0036 25.1 6.9 24 227-250 54-77 (84)
171 3mov_A Lamin-B1; LMNB1, B-type 36.8 1.1E+02 0.0038 25.1 7.2 9 248-256 47-55 (95)
172 3etv_A Protein transport prote 36.7 1.1E+02 0.0037 31.0 8.4 87 181-269 14-102 (355)
173 3iv1_A Tumor susceptibility ge 36.0 1.7E+02 0.0058 23.5 10.9 64 175-244 10-73 (78)
174 3i00_A HIP-I, huntingtin-inter 36.0 2.1E+02 0.0071 24.5 11.8 17 221-237 19-35 (120)
175 3lss_A Seryl-tRNA synthetase; 35.8 1.6E+02 0.0053 30.9 9.8 22 181-202 49-70 (484)
176 1f5n_A Interferon-induced guan 35.8 4.3E+02 0.015 28.1 20.1 18 278-295 565-582 (592)
177 1wle_A Seryl-tRNA synthetase; 35.6 2.7E+02 0.0094 29.0 11.7 20 398-417 345-364 (501)
178 3vmx_A Voltage-gated hydrogen 34.4 1.4E+02 0.0047 22.0 7.1 35 218-252 5-39 (48)
179 1j1d_C Troponin I, TNI; THIN f 33.6 2.4E+02 0.0083 24.6 11.8 20 178-197 28-47 (133)
180 3rrk_A V-type ATPase 116 kDa s 32.9 1.6E+02 0.0054 28.4 8.9 48 220-269 95-143 (357)
181 1zxa_A CGMP-dependent protein 32.8 77 0.0026 24.8 5.3 28 230-257 24-51 (67)
182 3tnf_B LIDA, RAS-related prote 32.5 1.1E+02 0.0038 30.4 7.5 48 175-222 24-73 (384)
183 1joc_A EEA1, early endosomal a 32.5 2.3E+02 0.0078 24.0 9.6 13 232-244 19-31 (125)
184 4b4t_K 26S protease regulatory 32.4 63 0.0022 33.0 6.1 7 332-338 168-174 (428)
185 2ic9_A Nucleocapsid protein; h 32.2 2.2E+02 0.0075 23.7 8.7 9 285-293 57-65 (96)
186 3uux_B Mitochondrial division 32.0 1.2E+02 0.0041 29.1 7.5 32 221-252 188-219 (242)
187 1m1j_C Fibrinogen gamma chain; 31.9 4.3E+02 0.015 27.0 14.2 29 273-301 105-133 (409)
188 1t6f_A Geminin; coiled-coil, c 31.7 85 0.0029 21.9 4.7 21 234-254 10-30 (37)
189 3i00_A HIP-I, huntingtin-inter 31.4 2.5E+02 0.0084 24.0 10.8 20 175-194 14-33 (120)
190 2v66_B Nuclear distribution pr 31.3 2.4E+02 0.0083 23.9 13.3 33 229-261 40-72 (111)
191 3m9b_A Proteasome-associated A 30.7 58 0.002 31.5 5.2 7 323-329 122-128 (251)
192 3haj_A Human pacsin2 F-BAR; pa 30.6 4.4E+02 0.015 26.7 14.4 22 320-342 287-308 (486)
193 2gd5_A Charged multivesicular 30.4 2.9E+02 0.0098 24.5 11.2 39 213-251 10-48 (179)
194 2v0o_A FCHO2, FCH domain only 30.1 3.2E+02 0.011 24.8 18.0 22 181-202 131-152 (276)
195 2w6a_A ARF GTPase-activating p 30.1 1.9E+02 0.0064 22.3 8.3 41 221-261 17-57 (63)
196 3rrk_A V-type ATPase 116 kDa s 29.9 1E+02 0.0034 29.9 6.9 33 214-246 96-128 (357)
197 2zdi_C Prefoldin subunit alpha 29.8 2.7E+02 0.0091 23.9 9.8 42 216-257 97-138 (151)
198 1ik9_A DNA repair protein XRCC 29.8 3.4E+02 0.012 25.2 13.4 47 233-279 148-195 (213)
199 2wt7_B Transcription factor MA 29.7 2.3E+02 0.008 23.2 9.4 27 232-258 49-75 (90)
200 2fic_A Bridging integrator 1; 29.6 3.2E+02 0.011 24.8 13.9 15 173-187 109-123 (251)
201 3iox_A AGI/II, PA; alpha helix 29.6 5.2E+02 0.018 27.2 15.9 54 233-286 36-93 (497)
202 2dgc_A Protein (GCN4); basic d 29.3 73 0.0025 24.2 4.6 25 227-251 33-57 (63)
203 1lwu_C Fibrinogen gamma chain; 29.3 1E+02 0.0035 30.7 6.8 7 308-314 100-106 (323)
204 2p22_A Suppressor protein STP2 29.1 2.4E+02 0.0082 25.7 8.7 44 258-301 48-91 (174)
205 1g6u_A Domain swapped dimer; d 29.0 1.6E+02 0.0054 21.0 6.7 19 233-251 22-40 (48)
206 3ghg_C Fibrinogen gamma chain; 28.8 4.9E+02 0.017 26.7 14.7 28 177-204 25-52 (411)
207 4dci_A Uncharacterized protein 28.6 3.1E+02 0.011 24.3 11.1 23 280-302 84-106 (150)
208 4h22_A Leucine-rich repeat fli 28.1 2.7E+02 0.0093 23.4 10.8 19 229-247 28-46 (103)
209 2w83_C C-JUN-amino-terminal ki 27.9 2.3E+02 0.008 22.7 10.6 36 222-257 28-63 (77)
210 2l5g_B Putative uncharacterize 27.9 1.2E+02 0.0043 21.7 5.2 25 213-237 5-29 (42)
211 2dq3_A Seryl-tRNA synthetase; 27.7 78 0.0027 32.2 5.9 28 175-203 30-57 (425)
212 1jnm_A Proto-oncogene C-JUN; B 27.4 58 0.002 24.4 3.7 19 222-240 34-52 (62)
213 1zhc_A Hypothetical protein HP 27.4 1.4E+02 0.0049 23.3 6.1 40 220-260 20-59 (76)
214 2aze_B Transcription factor E2 27.3 1.1E+02 0.0037 25.6 5.7 21 299-319 56-76 (106)
215 3bbp_D GRIP and coiled-coil do 27.1 40 0.0014 26.7 2.8 35 227-261 32-66 (71)
216 1fmh_A General control protein 27.0 1E+02 0.0035 20.5 4.2 9 235-243 12-20 (33)
217 3ra3_A P1C; coiled coil domain 26.9 32 0.0011 22.2 1.7 18 237-254 6-23 (28)
218 2p22_C Protein SRN2; endosome, 26.8 3.7E+02 0.013 24.6 11.3 23 246-268 91-113 (192)
219 3hhm_B NISH2 P85alpha; PI3KCA, 26.7 5E+02 0.017 26.0 15.5 61 218-285 199-259 (373)
220 1lrz_A FEMA, factor essential 26.5 1.8E+02 0.006 29.0 8.2 13 303-315 311-323 (426)
221 1vcs_A Vesicle transport throu 26.3 57 0.0019 26.8 3.8 26 232-257 39-64 (102)
222 1wlq_A Geminin; coiled-coil; 2 25.9 1.3E+02 0.0044 24.5 5.6 41 263-303 20-61 (83)
223 3ghg_C Fibrinogen gamma chain; 25.8 5.5E+02 0.019 26.3 13.8 28 176-203 38-68 (411)
224 1m1j_A Fibrinogen alpha subuni 25.8 6E+02 0.02 26.7 17.6 19 289-307 179-197 (491)
225 2gd5_A Charged multivesicular 25.7 3.5E+02 0.012 23.9 13.3 25 214-238 25-49 (179)
226 2dgc_A Protein (GCN4); basic d 25.6 1.2E+02 0.0039 23.1 5.1 29 229-257 28-56 (63)
227 3tq7_B Microtubule-associated 25.4 82 0.0028 25.5 4.4 27 177-203 9-35 (82)
228 3mov_A Lamin-B1; LMNB1, B-type 25.4 1.6E+02 0.0055 24.1 6.3 24 230-253 36-59 (95)
229 1gu4_A CAAT/enhancer binding p 25.2 1.4E+02 0.0047 23.8 5.7 30 215-244 41-70 (78)
230 3etw_A Adhesin A; antiparallel 25.1 3.3E+02 0.011 23.4 13.1 10 295-304 103-112 (119)
231 3m91_A Proteasome-associated A 24.8 2.1E+02 0.0072 21.1 7.2 31 228-258 13-43 (51)
232 3viq_B Mating-type switching p 24.8 71 0.0024 26.1 3.9 23 215-237 6-28 (85)
233 3m91_A Proteasome-associated A 24.4 2.1E+02 0.0073 21.0 6.5 31 218-248 17-47 (51)
234 1j1e_C Troponin I, TNI; THIN f 24.1 4.2E+02 0.014 24.3 11.6 20 178-197 28-47 (180)
235 2ve7_C Kinetochore protein NUF 24.0 11 0.00038 36.0 -1.1 62 213-274 144-205 (250)
236 3qh9_A Liprin-beta-2; coiled-c 23.9 2.9E+02 0.0099 22.3 10.8 7 189-195 8-14 (81)
237 2xnx_M M protein, M1-BC1; cell 23.8 1E+02 0.0035 27.5 5.1 23 233-255 82-104 (146)
238 3haj_A Human pacsin2 F-BAR; pa 23.5 5.9E+02 0.02 25.8 13.7 8 173-180 82-89 (486)
239 4etp_B Spindle POLE BODY-assoc 23.3 2.1E+02 0.0072 28.7 7.8 54 233-293 5-58 (333)
240 3frt_A Charged multivesicular 23.3 4.6E+02 0.016 24.4 12.4 40 212-251 9-48 (218)
241 3ga8_A HTH-type transcriptiona 23.2 12 0.0004 29.2 -1.0 21 9-30 25-45 (78)
242 2f1m_A Acriflavine resistance 23.1 1.7E+02 0.0057 26.8 6.8 28 274-301 99-126 (277)
243 3ajw_A Flagellar FLIJ protein; 22.9 3.3E+02 0.011 22.6 12.2 31 223-253 18-48 (150)
244 1fzc_C Fibrin; blood coagulati 22.8 47 0.0016 33.0 3.0 14 332-345 118-131 (319)
245 2r2v_A GCN4 leucine zipper; co 22.6 1.7E+02 0.0059 20.0 4.8 22 236-257 6-27 (34)
246 1gk4_A Vimentin; intermediate 22.3 2.9E+02 0.0098 21.7 10.3 60 232-294 2-61 (84)
247 1nkp_B MAX protein, MYC proto- 22.1 91 0.0031 24.4 4.1 26 228-253 51-76 (83)
248 1zhc_A Hypothetical protein HP 21.8 1.1E+02 0.0039 23.9 4.5 20 232-251 18-37 (76)
249 1i6z_A BAG-family molecular ch 21.7 4.1E+02 0.014 23.3 11.6 14 291-304 118-131 (135)
250 3n5l_A Binding protein compone 21.5 3.5E+02 0.012 25.4 8.8 28 176-204 216-243 (310)
251 1uii_A Geminin; human, DNA rep 21.3 2.4E+02 0.0083 22.9 6.4 54 196-251 27-80 (83)
252 2pms_C Pneumococcal surface pr 21.2 1.6E+02 0.0055 25.6 5.7 23 279-301 67-89 (125)
253 1qvr_A CLPB protein; coiled co 21.2 3.1E+02 0.011 29.8 9.5 12 165-176 329-340 (854)
254 3ghg_B Fibrinogen beta chain; 21.1 5.3E+02 0.018 26.9 10.5 36 169-205 75-110 (461)
255 3dyt_A Sorting nexin-9; 3-heli 21.0 5.9E+02 0.02 24.9 12.5 17 285-301 342-358 (366)
256 2ocy_A RAB guanine nucleotide 20.6 4.6E+02 0.016 23.4 16.5 23 270-292 119-141 (154)
257 2wvr_A Geminin; DNA replicatio 20.5 2.9E+02 0.0099 26.0 7.6 61 198-260 98-158 (209)
258 2wuj_A Septum site-determining 20.5 79 0.0027 23.5 3.2 28 227-254 30-57 (57)
259 2xdj_A Uncharacterized protein 20.5 3.3E+02 0.011 21.8 9.7 36 227-262 23-58 (83)
No 1
>4ddp_A Beclin-1; ECD, autophagy, membrane binding, membrane protein; 1.55A {Homo sapiens}
Probab=100.00 E-value=3.1e-64 Score=475.31 Aligned_cols=150 Identities=42% Similarity=0.878 Sum_probs=132.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccCCCceeeeecCCeeeeccccCCCCCCCCCChhHHHHHHHHHHHHHHHHHhhc
Q 013864 277 AHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMCQYF 356 (435)
Q Consensus 277 ~~~ee~~sl~~q~~~~~~qLdkLrktNV~Nd~F~I~hdG~fGTINGlRLGrlp~~~V~W~EINAAwGQ~~LLL~tla~kl 356 (435)
++++|++|+++||+++++|||+|+||||||+||||||||+|||||||||||+|++||+|+||||||||+||||+|||+++
T Consensus 2 ~~~~e~~sl~~q~~~~~~~L~~L~~tNv~n~~F~I~hdG~fgtINglRLGrlp~~~V~W~EINAAwGq~~LLL~tla~~l 81 (210)
T 4ddp_A 2 ELDDELKSVENQMRYAQTQLDKLKKTNVFNATFHIWHSGQFGTINNFRLGRLPSVPVEWNEINAAWGQTVLLLHALANKM 81 (210)
T ss_dssp ------CCHHHHHHHHHHHHHTC----CCSSCCCEEEETTEEEETTEECCCBTTBCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhcccccceeEEEecCCceeEcccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCceeEEecCCcceeeccCC--ceeecccC--CCCcccccchHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCCCCC
Q 013864 357 RPKFPYRIKIIPMGSYPRIMDSNN--NTYELFGP--VNLFWSTRYDKAMTLFLSCLKDFAEFANSKDQENNIPPDKCFKL 432 (435)
Q Consensus 357 ~~kF~~~YkLvPmGS~SkI~~~~~--~~~eLyg~--~~lf~~~kFD~AMvaFLdCL~Q~~e~v~~~d~~~~~p~~~~f~L 432 (435)
+++|+ +|+|+||||||+|++..+ .+|+|||+ .++||++|||.||+|||+||+||++++++.| ++|+|
T Consensus 82 ~~~f~-~y~L~P~GS~S~I~~~~~~~~~l~Ly~sg~~~~f~~~kFD~Am~afL~cl~q~~~~~~~~~--------~~~~l 152 (210)
T 4ddp_A 82 GLKFQ-RYRLVPYGNHSYLESLTDKSKELPLYCSGGLRFFWDNKFDHAMVAFLDCVQQFKEEVEKGE--------TRFCL 152 (210)
T ss_dssp TCCCS-SEEEECCGGGCEEEESSCTTCCEESCCCSSCGGGCCSHHHHHHHHHHHHHHHHHHHHHCC---------CCCCC
T ss_pred CCCcc-ceeEEecCCcceeeEecCCCeEEeceeCCCccccccccccHHHHHHHHHHHHHHHHHhcCC--------CCCCC
Confidence 99999 999999999999998653 58999965 5789999999999999999999999999755 56999
Q ss_pred CCC
Q 013864 433 PYK 435 (435)
Q Consensus 433 PYk 435 (435)
||+
T Consensus 153 PY~ 155 (210)
T 4ddp_A 153 PYR 155 (210)
T ss_dssp SSC
T ss_pred CeE
Confidence 996
No 2
>3vp7_A Vacuolar protein sorting-associated protein 30; targeting, PI3-kinase complex I, PRE-autophagosomal structur protein transport; 2.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.4e-56 Score=422.81 Aligned_cols=133 Identities=32% Similarity=0.570 Sum_probs=111.4
Q ss_pred cccCCCceeeeecCCeeeeccccCCCCCCCCCChhHHHHHHHHHHHHHHHHHhhcCCCCCCceeEEecCCcceeec----
Q 013864 302 TNVLNDAFPIWHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMCQYFRPKFPYRIKIIPMGSYPRIMD---- 377 (435)
Q Consensus 302 tNV~Nd~F~I~hdG~fGTINGlRLGrlp~~~V~W~EINAAwGQ~~LLL~tla~kl~~kF~~~YkLvPmGS~SkI~~---- 377 (435)
||||||+|||||||+|||||||||||+|++||+|+||||||||+||||+|||++++++|+ +|||+||||||+|++
T Consensus 1 tNV~Nd~F~I~hdg~fgTINglRLGrl~~~~V~W~EINAAwGq~~LLL~tla~kl~~~f~-~Y~L~PmGS~S~I~~~~~~ 79 (220)
T 3vp7_A 1 INIFNATFKISHSGPFATINGLRLGSIPESVVPWKEINAALGQLILLLATINKNLKINLV-DYELQPMGSFSKIKKRMVN 79 (220)
T ss_dssp CCTTTTTCCEEEETTEEEETTEEECCBTTBCCCHHHHHHHHHHHHHHHHHHHHHTTCCCS-SEEEECCGGGCEEEEEC--
T ss_pred CccccceeEEeecCCceeEcccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcc-cceEEeCCCcceEeecccc
Confidence 799999999999999999999999999999999999999999999999999999999999 999999999999998
Q ss_pred ---cC---------CceeecccCCC-----Ccc-cccchHHHHHHHHHHHHHHHHHhhcCc------------------C
Q 013864 378 ---SN---------NNTYELFGPVN-----LFW-STRYDKAMTLFLSCLKDFAEFANSKDQ------------------E 421 (435)
Q Consensus 378 ---~~---------~~~~eLyg~~~-----lf~-~~kFD~AMvaFLdCL~Q~~e~v~~~d~------------------~ 421 (435)
.+ ..+|+|||+++ +|+ ++|||+||+|||+||+||++++++.++ .
T Consensus 80 ~~~~~~~~~~~~~~~~~l~Ly~s~~~~lg~~f~~~~kFD~aMvafL~cl~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (220)
T 3vp7_A 80 SVEYNNSTTNAPGDWLILPVYYDENFNLGRIFRKETKFDKSLETTLEIISEITRQLSTIASSYSSQTLTTSQDESSMNNA 159 (220)
T ss_dssp -------------CEEEEESSCCC-----------CHHHHHHHHHHHHHHHHHHHHHHHHHC------------------
T ss_pred cccccccccccCCCCeEEecccCCCcccccccccccchhHHHHHHHHHHHHHHHHHHhcCcccccccccccccccccccc
Confidence 32 25799998764 575 579999999999999999999987554 1
Q ss_pred CCCCCCCC-CCCCCC
Q 013864 422 NNIPPDKC-FKLPYK 435 (435)
Q Consensus 422 ~~~p~~~~-f~LPYk 435 (435)
++++++++ |+|||+
T Consensus 160 ~~~~~~~~~l~LPY~ 174 (220)
T 3vp7_A 160 NDVENSTSILELPYI 174 (220)
T ss_dssp ---------CCCSSC
T ss_pred ccccCCCCcccCCeE
Confidence 22333444 999997
No 3
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=99.76 E-value=9.7e-18 Score=141.23 Aligned_cols=90 Identities=22% Similarity=0.429 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 213 ADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVS 292 (435)
Q Consensus 213 e~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~~eE~~~w~e~n~~q~qL~~~~ee~~sl~~q~~~~ 292 (435)
+.+.+++..|+.+|.+|.++|++||++++.++++|..++.+..+|+.+|.+||++||.|++++++|+++++|+++||.|+
T Consensus 7 ~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~ 86 (96)
T 3q8t_A 7 EQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYA 86 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhc
Q 013864 293 QAHLELLKRT 302 (435)
Q Consensus 293 ~~qLdkLrkt 302 (435)
++||++|+|.
T Consensus 87 ~~qLdkL~K~ 96 (96)
T 3q8t_A 87 QMQLDKLKKK 96 (96)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHhhcC
Confidence 9999999983
No 4
>2p1l_B Beclin 1; apoptosis, autophagy, BH3 domain, BCL; 2.50A {Homo sapiens} PDB: 3dvu_C 2pon_A
Probab=98.40 E-value=6e-08 Score=66.03 Aligned_cols=27 Identities=26% Similarity=0.471 Sum_probs=18.6
Q ss_pred CCcccchHHHHHHHHHhhcCCcccCCc
Q 013864 142 NSGFHSTITVLKRAFEIATSQTQVEQP 168 (435)
Q Consensus 142 ~~~ls~~i~~l~~lFdILSs~s~IDhP 168 (435)
..+||++++++++||||||++++||||
T Consensus 5 ~~~ls~~~~~~~~lFdILS~~sdIDhP 31 (31)
T 2p1l_B 5 MENLSRRLKVTGDLFDIMSGQTDVDHP 31 (31)
T ss_dssp HHHHHHHHHHHHHHHHHTTC-------
T ss_pred cccHHHHHHHHHHHHHHHhCCCcCCCC
Confidence 467999999999999999999999999
No 5
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=96.58 E-value=0.2 Score=44.89 Aligned_cols=20 Identities=15% Similarity=0.086 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 013864 181 LDKEVDDVTRDIEAYEACLQ 200 (435)
Q Consensus 181 Ld~qle~~~~E~d~Y~~fL~ 200 (435)
+++.+..+..+++.+..-+.
T Consensus 4 ~~~~~~~l~~~~~~~~~~~~ 23 (284)
T 1c1g_A 4 IKKKMQMLKLDKENALDRAD 23 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHH
Confidence 33333333333333333333
No 6
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=96.54 E-value=0.31 Score=45.45 Aligned_cols=60 Identities=15% Similarity=0.272 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 176 VLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVN 244 (435)
Q Consensus 176 ~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~ 244 (435)
.+...+..++++++.|.+.|+..=+.|+. ++.+++..++.....|...+..|..+...+.
T Consensus 17 ~~~~~~~q~~~~le~El~EFqesSrELE~---------ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k 76 (189)
T 2v71_A 17 ELSMKYKQSFQEARDELVEFQEGSRELEA---------ELEAQLVQAEQRNRDLQADNQRLKYEVEALK 76 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566777888888888887777666653 2344444444444444444444444444433
No 7
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=96.22 E-value=0.56 Score=41.89 Aligned_cols=10 Identities=0% Similarity=0.003 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 013864 184 EVDDVTRDIE 193 (435)
Q Consensus 184 qle~~~~E~d 193 (435)
++..+..+..
T Consensus 28 ~l~~l~~~~~ 37 (284)
T 1c1g_A 28 DKKAAEDRSK 37 (284)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 8
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=96.05 E-value=0.82 Score=41.35 Aligned_cols=83 Identities=16% Similarity=0.144 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 220 LKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELL 299 (435)
Q Consensus 220 ~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~~eE~~~w~e~n~~q~qL~~~~ee~~sl~~q~~~~~~qLdkL 299 (435)
...+.+.+.|...|++.|.--+..+.....|+.++.+|+..=...=..|-..+..|-....++.++.+.+.+..+.+.+|
T Consensus 73 d~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~~~~~~~~ 152 (155)
T 2efr_A 73 DKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLENEVARL 152 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHh
Confidence 34555666666666666666666666666666666666544333344455566667777777888888888888888888
Q ss_pred hhc
Q 013864 300 KRT 302 (435)
Q Consensus 300 rkt 302 (435)
++.
T Consensus 153 ~~~ 155 (155)
T 2efr_A 153 KKL 155 (155)
T ss_dssp HTC
T ss_pred hcC
Confidence 863
No 9
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=95.88 E-value=0.38 Score=40.05 Aligned_cols=87 Identities=14% Similarity=0.226 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 013864 192 IEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNF 271 (435)
Q Consensus 192 ~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~~eE~~~w~e~n~~ 271 (435)
+.+-..-|+.|+.+ +..+..++.+|+.+...+..+|..++.+...++.+-.....+...+.-.-- .|
T Consensus 6 ~~~l~~eL~~l~~e------E~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~-------e~ 72 (96)
T 3q8t_A 6 SEQLQRELKELALE------EERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQL-------EL 72 (96)
T ss_dssp HHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HH
T ss_pred HHHHHHHHHHHHHH------HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH-------HH
Confidence 34445556666542 456788999999999999999999999999988888877777666554333 34
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 013864 272 QFQLIAHQEERDAISSKIEV 291 (435)
Q Consensus 272 q~qL~~~~ee~~sl~~q~~~ 291 (435)
+-++..+..+.+-..++++.
T Consensus 73 ~dE~~Sl~~q~~~~~~qLdk 92 (96)
T 3q8t_A 73 DDELKSVENQMRYAQMQLDK 92 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444443
No 10
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=95.59 E-value=0.15 Score=53.04 Aligned_cols=29 Identities=7% Similarity=0.051 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 220 LKIEEEERKLEAAIEETEKQNAEVNAELK 248 (435)
Q Consensus 220 ~~Le~EE~~L~~eL~~lE~e~~~l~~el~ 248 (435)
+++++..+.++.+++..+++.++..++++
T Consensus 512 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (597)
T 3oja_B 512 THLKERQAFKLRETQARRTEADAKQKETE 540 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhHHHHHHHHHhhhhhhcchh
Confidence 33333333333333333333333333333
No 11
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=95.35 E-value=0.26 Score=51.19 Aligned_cols=39 Identities=15% Similarity=0.113 Sum_probs=20.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013864 263 RYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 301 (435)
Q Consensus 263 ~~w~e~n~~q~qL~~~~ee~~sl~~q~~~~~~qLdkLrk 301 (435)
++-++.+..+.++..+++|+..++.+++..+.++..|++
T Consensus 527 ~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~ 565 (597)
T 3oja_B 527 ARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQ 565 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHH
Confidence 344444444455555555555666555555555554443
No 12
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=95.32 E-value=0.13 Score=58.75 Aligned_cols=24 Identities=13% Similarity=0.217 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 230 EAAIEETEKQNAEVNAELKELELK 253 (435)
Q Consensus 230 ~~eL~~lE~e~~~l~~el~~le~e 253 (435)
++++..|+++.+++++++.++.+|
T Consensus 983 ~~~v~~L~~e~~~l~~~~~~~~ke 1006 (1080)
T 2dfs_A 983 TNRVLSLQEEIAKLRKELHQTQTE 1006 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444333
No 13
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=95.22 E-value=1.2 Score=42.45 Aligned_cols=11 Identities=27% Similarity=0.353 Sum_probs=8.3
Q ss_pred EEecCCcceee
Q 013864 366 IIPMGSYPRIM 376 (435)
Q Consensus 366 LvPmGS~SkI~ 376 (435)
++.|=++.+|.
T Consensus 222 Iv~Cp~CgRIL 232 (256)
T 3na7_A 222 MITCPYCGRIL 232 (256)
T ss_dssp CEECTTTCCEE
T ss_pred EEECCCCCeeE
Confidence 67777787775
No 14
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=95.01 E-value=1.9 Score=40.99 Aligned_cols=35 Identities=14% Similarity=0.139 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 216 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKEL 250 (435)
Q Consensus 216 ~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~l 250 (435)
.+|+..++.+...++.++.++..+.+.+..++..+
T Consensus 96 ~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~ 130 (256)
T 3na7_A 96 NIEEDIAKERSNQANREIENLQNEIKRKSEKQEDL 130 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444344443444444444433333333333333
No 15
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=94.95 E-value=1.7 Score=40.54 Aligned_cols=110 Identities=14% Similarity=0.242 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHHhcccccC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH
Q 013864 188 VTRDIEAYEACLQRLEGEARDV-LSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF----KELEE 262 (435)
Q Consensus 188 ~~~E~d~Y~~fL~~L~~~~~~~-~~ee~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L----~~eE~ 262 (435)
.+.|+..|..........-... ..-++|...- .+=|..|+++|+.+++....+...+..|..+.... +..-.
T Consensus 8 ~~ee~~ywk~~~~~~~q~~~~le~El~EFqesS---rELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~ 84 (189)
T 2v71_A 8 LKEETAYWKELSMKYKQSFQEARDELVEFQEGS---RELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYA 84 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777766544443221000 0012333222 22234455666666666666666666665555443 33333
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHh
Q 013864 263 RYWQEFNNFQFQLIAHQEERDAISSKI---EVSQAHLELLK 300 (435)
Q Consensus 263 ~~w~e~n~~q~qL~~~~ee~~sl~~q~---~~~~~qLdkLr 300 (435)
+.-+..|.++.++..+....+.+..++ ++++..|++=.
T Consensus 85 e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~ 125 (189)
T 2v71_A 85 QSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAK 125 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 455567888888777777777776553 44444444433
No 16
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=94.83 E-value=0.38 Score=42.58 Aligned_cols=68 Identities=18% Similarity=0.246 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 013864 215 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEER 282 (435)
Q Consensus 215 l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~~eE~~~w~e~n~~q~qL~~~~ee~ 282 (435)
+..++.++..+-..|.++++++++|...+..++..++.+.+.+.++-+++-++.+.++.++..++.++
T Consensus 66 iadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~ 133 (138)
T 3hnw_A 66 IADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETEL 133 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677778888888888999888888888888888888888887777777778888877776665443
No 17
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=94.56 E-value=0.75 Score=58.03 Aligned_cols=68 Identities=18% Similarity=0.240 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 229 LEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHL 296 (435)
Q Consensus 229 L~~eL~~lE~e~~~l~~el~~le~e~~~L~~eE~~~w~e~n~~q~qL~~~~ee~~sl~~q~~~~~~qL 296 (435)
++++|.++|++.++..+++.+++.++.++++.=+++-.+|.....+...++++.+..+.+++.|..-+
T Consensus 2012 kr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li 2079 (3245)
T 3vkg_A 2012 LREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALL 2079 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777777777777777777666666677777777777777777777777777665533
No 18
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=93.95 E-value=3.7 Score=37.59 Aligned_cols=55 Identities=24% Similarity=0.239 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Q 013864 243 VNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAIS----SKIEVSQAHLE 297 (435)
Q Consensus 243 l~~el~~le~e~~~L~~eE~~~w~e~n~~q~qL~~~~ee~~sl~----~q~~~~~~qLd 297 (435)
+...+..|+.+++++..-+.+.-.+...++-.+..++.+..+++ -++..++..++
T Consensus 95 lq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~eid~~~eLKalQ~~~e 153 (168)
T 3o0z_A 95 LQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLEIDLNYKLKSLQQRLE 153 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 33445555566666666666666666666666666666666665 44444444443
No 19
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=93.32 E-value=4.4 Score=36.53 Aligned_cols=32 Identities=9% Similarity=0.092 Sum_probs=19.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 266 QEFNNFQFQLIAHQEERDAISSKIEVSQAHLE 297 (435)
Q Consensus 266 ~e~n~~q~qL~~~~ee~~sl~~q~~~~~~qLd 297 (435)
+....++..+-.+++++.+-..+|...+..||
T Consensus 98 Rsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd 129 (155)
T 2efr_A 98 RSVTKLEKSIDDLEDELYAQKLKYKAISEEMK 129 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666666666666666655
No 20
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=91.91 E-value=2.6 Score=53.40 Aligned_cols=34 Identities=12% Similarity=0.227 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013864 171 LECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEG 204 (435)
Q Consensus 171 ~eC~d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~ 204 (435)
.|-...-..-|.++.+++...++.|..=|++|..
T Consensus 1898 Leli~~y~~ll~~K~~el~~~~~rl~~GL~KL~e 1931 (3245)
T 3vkg_A 1898 LDFINQVVLLINEKRDQLEEEQLHLNIGLKKLRD 1931 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566667777777778888888877753
No 21
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=91.28 E-value=3.3 Score=42.01 Aligned_cols=42 Identities=10% Similarity=0.073 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 013864 237 EKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAH 278 (435)
Q Consensus 237 E~e~~~l~~el~~le~e~~~L~~eE~~~w~e~n~~q~qL~~~ 278 (435)
|.+++...++.+....+.+.+.++.++.-++..++..++.+.
T Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (487)
T 3oja_A 427 QSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASA 468 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhc
Confidence 333333334444444444444443333334444444444333
No 22
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=90.54 E-value=6.4 Score=32.39 Aligned_cols=69 Identities=17% Similarity=0.208 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013864 231 AAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 301 (435)
Q Consensus 231 ~eL~~lE~e~~~l~~el~~le~e~~~L~~eE~~~w~e~n~~q~qL~~~~ee~~sl~~q~~~~~~qLdkLrk 301 (435)
.....||++...|+.++..+.... -.....-|..+.+.++.++.....++..+..+++.....++.+++
T Consensus 23 dKVR~LEqqN~~Le~~i~~l~~~~--~~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~ 91 (93)
T 3s4r_A 23 DKVRFLEQQNKILLAELEQLKGQG--KSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLRE 91 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcc--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444555555555554443221 223445588888889999999999999999999998888888875
No 23
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=90.53 E-value=4.9 Score=34.45 Aligned_cols=22 Identities=18% Similarity=0.296 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 013864 278 HQEERDAISSKIEVSQAHLELL 299 (435)
Q Consensus 278 ~~ee~~sl~~q~~~~~~qLdkL 299 (435)
...+.+.+..++.+.+.++.+|
T Consensus 88 l~~eKe~L~~ql~~Lq~q~~~l 109 (110)
T 2v4h_A 88 LVEKKEYLQEQLEQLQREFNKL 109 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHhHHHHHHHHHHHHHHHHHhc
Confidence 3455556666666666666554
No 24
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=90.22 E-value=6.2 Score=32.05 Aligned_cols=68 Identities=13% Similarity=0.098 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 217 KEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHL 296 (435)
Q Consensus 217 ~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~~eE~~~w~e~n~~q~qL~~~~ee~~sl~~q~~~~~~qL 296 (435)
+++.+++.+-..+...+...++.+.++......+..+ .|+++.++.+.++.+..+.++-.....+|
T Consensus 14 eEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~e--------------k~~L~~ql~eaEe~~~~L~~~K~eLE~~l 79 (89)
T 3bas_A 14 EEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQ--------------KNDLFGSMKQLEDKVEELLSKNYHLENEV 79 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555554444444444444444333 34444445555555555555544444444
Q ss_pred HH
Q 013864 297 EL 298 (435)
Q Consensus 297 dk 298 (435)
.-
T Consensus 80 ~e 81 (89)
T 3bas_A 80 AR 81 (89)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 25
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=89.78 E-value=6.5 Score=31.27 Aligned_cols=35 Identities=29% Similarity=0.374 Sum_probs=25.1
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013864 267 EFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 301 (435)
Q Consensus 267 e~n~~q~qL~~~~ee~~sl~~q~~~~~~qLdkLrk 301 (435)
++..+++.+..++++++.++.++..++..|+.-.+
T Consensus 42 ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeeaek 76 (81)
T 1ic2_A 42 ELVALQKKLKGTEDELDKYSESLKDAQEKLELADK 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667777777888888888888877776544
No 26
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=89.40 E-value=4.3 Score=35.75 Aligned_cols=39 Identities=10% Similarity=0.043 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 222 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKEL 260 (435)
Q Consensus 222 Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~~e 260 (435)
+--|--++..+.+.|+.+.+++..|+..|..++..++..
T Consensus 66 iadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k 104 (138)
T 3hnw_A 66 IADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIK 104 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555555554444433
No 27
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=89.39 E-value=8 Score=31.81 Aligned_cols=30 Identities=10% Similarity=0.224 Sum_probs=12.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 267 EFNNFQFQLIAHQEERDAISSKIEVSQAHL 296 (435)
Q Consensus 267 e~n~~q~qL~~~~ee~~sl~~q~~~~~~qL 296 (435)
+...++.++..+.++...+...+.....++
T Consensus 72 ~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~ 101 (112)
T 1l8d_A 72 DLNNSKNTLAKLIDRKSELERELRRIDMEI 101 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334344444444444444443333
No 28
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=88.11 E-value=9.4 Score=30.98 Aligned_cols=37 Identities=27% Similarity=0.216 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 217 KEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELK 253 (435)
Q Consensus 217 ~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e 253 (435)
+++.+++....+.....++++.....+.++..+|..+
T Consensus 21 eel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~q 57 (89)
T 3bas_A 21 KQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGS 57 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555666666666666666666554
No 29
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=88.01 E-value=9.1 Score=34.51 Aligned_cols=21 Identities=14% Similarity=0.219 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 013864 232 AIEETEKQNAEVNAELKELEL 252 (435)
Q Consensus 232 eL~~lE~e~~~l~~el~~le~ 252 (435)
.|..|++++..+..++..++.
T Consensus 69 ~I~~L~~El~~l~~ki~dLee 89 (152)
T 3a7p_A 69 TLAILQKELKSKEQEIRRLKE 89 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444443333
No 30
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=87.34 E-value=7.4 Score=41.00 Aligned_cols=95 Identities=20% Similarity=0.341 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 189 TRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEF 268 (435)
Q Consensus 189 ~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~~eE~~~w~e~ 268 (435)
+.+..+|+.-|.++++...+ -.++.++.+.++..+-++..+|.+.+++..++..+.- ++++++.++.-..|-++.
T Consensus 8 q~~la~yq~elarvqkana~--aka~Ye~~~ae~~a~n~~i~aeNeaikkrNa~aka~Y---e~~l~kY~~dlakY~~~~ 82 (497)
T 3iox_A 8 QAKLTAYQTELARVQKANAD--AKAAYEAAVAANNAANAALTAENTAIKKRNADAKADY---EAKLAKYQADLAKYQKDL 82 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 45666788888887754221 1233444455556666666666666666655544322 222333333334455556
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 013864 269 NNFQFQLIAHQEERDAISSK 288 (435)
Q Consensus 269 n~~q~qL~~~~ee~~sl~~q 288 (435)
.+++.+|...++++..+...
T Consensus 83 AeY~~kl~aYe~~~~~~~k~ 102 (497)
T 3iox_A 83 ADYPVKLKAYEDEQTSIKAA 102 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66666666666665544433
No 31
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=87.11 E-value=12 Score=31.07 Aligned_cols=23 Identities=17% Similarity=0.128 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 013864 178 SDKLDKEVDDVTRDIEAYEACLQ 200 (435)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~fL~ 200 (435)
++.+++.+..+..|.+.+..-..
T Consensus 4 MdaIKkKm~~lk~e~e~a~drae 26 (101)
T 3u1c_A 4 MDAIKKKMQMLKLDKENALDRAE 26 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555444333
No 32
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=86.95 E-value=17 Score=32.74 Aligned_cols=32 Identities=13% Similarity=0.109 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013864 270 NFQFQLIAHQEERDAISSKIEVSQAHLELLKR 301 (435)
Q Consensus 270 ~~q~qL~~~~ee~~sl~~q~~~~~~qLdkLrk 301 (435)
.++.....++.+..-....++..+.||..|+.
T Consensus 112 ~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~ 143 (154)
T 2ocy_A 112 AIEILNKRLTEQLREKDTLLDTLTLQLKNLKK 143 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33433444444455555667777777877775
No 33
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=86.81 E-value=12 Score=30.85 Aligned_cols=18 Identities=17% Similarity=0.191 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 013864 179 DKLDKEVDDVTRDIEAYE 196 (435)
Q Consensus 179 e~Ld~qle~~~~E~d~Y~ 196 (435)
+..++.+..+..|.+.+.
T Consensus 5 d~iKkKm~~lk~e~e~a~ 22 (101)
T 3u59_A 5 EAIKKKMQMLKLDKENAI 22 (101)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444433
No 34
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=85.56 E-value=26 Score=35.43 Aligned_cols=22 Identities=5% Similarity=-0.032 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 013864 181 LDKEVDDVTRDIEAYEACLQRL 202 (435)
Q Consensus 181 Ld~qle~~~~E~d~Y~~fL~~L 202 (435)
++++-...+.+.+.+...+.++
T Consensus 358 ~~~~~~~l~~~~~~le~~~~~~ 379 (487)
T 3oja_A 358 RKQAKITLEQKKKALDEQVSNG 379 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444433
No 35
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=85.00 E-value=8.1 Score=41.04 Aligned_cols=16 Identities=19% Similarity=0.204 Sum_probs=11.0
Q ss_pred HHHHHHHHHHhhcCCC
Q 013864 344 QACLLLHTMCQYFRPK 359 (435)
Q Consensus 344 Q~~LLL~tla~kl~~k 359 (435)
|==.|.+.+|.-|-..
T Consensus 181 ~QKQLeQv~a~dL~p~ 196 (562)
T 3ghg_A 181 QQKQLEQVIAKDLLPS 196 (562)
T ss_dssp HHHHHHHHHTTCCCCS
T ss_pred HHHHHHHHhhcccCCc
Confidence 4557788888877553
No 36
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=84.96 E-value=3 Score=33.31 Aligned_cols=45 Identities=20% Similarity=0.210 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 213 ADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 257 (435)
Q Consensus 213 e~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L 257 (435)
.+++..+.+..+|.+..+..|+++|++..+.+++|..|+.++..+
T Consensus 22 ~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 22 RDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444455555566666778888888888888888887776544
No 37
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=84.26 E-value=22 Score=37.78 Aligned_cols=10 Identities=20% Similarity=0.723 Sum_probs=6.7
Q ss_pred cccCCcchHH
Q 013864 163 TQVEQPLCLE 172 (435)
Q Consensus 163 s~IDhPLC~e 172 (435)
.+-+-|+|.|
T Consensus 29 ke~~WPfCaD 38 (562)
T 3ghg_A 29 KDSDWPFCSD 38 (562)
T ss_dssp CCCCCCBCCS
T ss_pred ccCCCCcccc
Confidence 3677787764
No 38
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=84.05 E-value=14 Score=30.07 Aligned_cols=19 Identities=26% Similarity=0.468 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 013864 232 AIEETEKQNAEVNAELKEL 250 (435)
Q Consensus 232 eL~~lE~e~~~l~~el~~l 250 (435)
|+++|..+...+.++..++
T Consensus 28 EieELKekN~~L~~e~~e~ 46 (81)
T 2jee_A 28 EIEELKEKNNSLSQEVQNA 46 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 39
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=83.85 E-value=7.6 Score=31.96 Aligned_cols=39 Identities=28% Similarity=0.427 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 217 KEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSK 255 (435)
Q Consensus 217 ~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~ 255 (435)
.-...|+...+.+..+|+.|+++...+..++.+++.++.
T Consensus 70 ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~ 108 (117)
T 2zqm_A 70 KAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQ 108 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334446666666667777777777776666666665543
No 40
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=82.91 E-value=18 Score=29.64 Aligned_cols=34 Identities=12% Similarity=0.278 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 220 LKIEEEERKLEAAIEETEKQNAEVNAELKELELK 253 (435)
Q Consensus 220 ~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e 253 (435)
...+.+...+..++..+..+...++.++..++.+
T Consensus 67 ~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~ 100 (112)
T 1l8d_A 67 SKYHLDLNNSKNTLAKLIDRKSELERELRRIDME 100 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555555544444443
No 41
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=82.72 E-value=12 Score=37.78 Aligned_cols=26 Identities=23% Similarity=0.363 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 231 AAIEETEKQNAEVNAELKELELKSKR 256 (435)
Q Consensus 231 ~eL~~lE~e~~~l~~el~~le~e~~~ 256 (435)
+.++++|.|..+++++|+.++.+.++
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (471)
T 3mq9_A 443 KKVEELEGEITTLNHKLQDASAEVER 468 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555554454444444444433
No 42
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=82.43 E-value=21 Score=30.07 Aligned_cols=63 Identities=24% Similarity=0.439 Sum_probs=37.5
Q ss_pred HHHHHH-HHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 194 AYEACL-QRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELE 261 (435)
Q Consensus 194 ~Y~~fL-~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~~eE 261 (435)
+|.++- .+|. .++-.+|..+-..||....+++.+-..+..........+.+|+.|+++|..+.
T Consensus 18 ~YE~~h~ErL~-----~mSKqELIqEYl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~EN 81 (104)
T 3s9g_A 18 TYERYHTESLQ-----NMSKQELIKEYLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAEN 81 (104)
T ss_dssp HHHHHHHHHHH-----TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-----hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHH
Confidence 566643 4444 34566776666666666666666655555555555566666666666665433
No 43
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=81.88 E-value=19 Score=29.11 Aligned_cols=35 Identities=20% Similarity=0.310 Sum_probs=22.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013864 267 EFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 301 (435)
Q Consensus 267 e~n~~q~qL~~~~ee~~sl~~q~~~~~~qLdkLrk 301 (435)
+++.++..+-...--+-.++++++..+.+|.-||+
T Consensus 50 d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fLkk 84 (86)
T 3swk_A 50 TLQSFRQDVDNASLARLDLERKVESLQEEIAFLKK 84 (86)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45555555555555555667777777777777776
No 44
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=81.73 E-value=39 Score=34.60 Aligned_cols=41 Identities=20% Similarity=0.331 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHhhcccCCCceeeeecCCeeeeccccCCCCCC-CCCChh
Q 013864 289 IEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGRLPK-IPVEWD 336 (435)
Q Consensus 289 ~~~~~~qLdkLrktNV~Nd~F~I~hdG~fGTINGlRLGrlp~-~~V~W~ 336 (435)
|+..+.||+.+..+|.+... .+ -++..|..+-+++ +|-+|.
T Consensus 181 ye~qqKQL~qv~a~~llP~~-~~------q~lp~LK~~p~kd~vP~~fK 222 (390)
T 1deq_A 181 YKNQQKQLEQVIAINLLPSR-DI------QYLPILKMSTITGPVPREFK 222 (390)
T ss_pred HHHHHHHHHhhhhhcccccc-cc------ccccccccccccccCChhhc
Confidence 55556678888888888742 11 2356666666655 333565
No 45
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=81.66 E-value=21 Score=32.08 Aligned_cols=61 Identities=18% Similarity=0.090 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 013864 218 EKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAI 285 (435)
Q Consensus 218 e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~~eE~~~w~e~n~~q~qL~~~~ee~~sl 285 (435)
.+..|+.|...|..+|.+++.+..+..+.+..+..|...|.- ++|.++-.+..++.|.+.|
T Consensus 69 ~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLql-------q~n~lE~kl~kLq~EN~~L 129 (152)
T 3a7p_A 69 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTI-------ENNVLQQKLSDLKKEHSQL 129 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555544444444444444333322 2344444444444444444
No 46
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=81.53 E-value=24 Score=30.01 Aligned_cols=28 Identities=25% Similarity=0.253 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013864 176 VLSDKLDKEVDDVTRDIEAYEACLQRLE 203 (435)
Q Consensus 176 ~Lle~Ld~qle~~~~E~d~Y~~fL~~L~ 203 (435)
.-+..|.++++.+..|+.....-++.+.
T Consensus 20 ~~I~~LR~qid~~~~e~a~l~leldn~~ 47 (119)
T 3ol1_A 20 EEMRELRRQVDQLTNDKARVEVERDNLA 47 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666555555544
No 47
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=81.31 E-value=15 Score=29.06 Aligned_cols=20 Identities=15% Similarity=0.099 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 013864 181 LDKEVDDVTRDIEAYEACLQ 200 (435)
Q Consensus 181 Ld~qle~~~~E~d~Y~~fL~ 200 (435)
+++.+..+..|.+.+..-+.
T Consensus 4 ikkKm~~lk~e~d~a~~~~~ 23 (81)
T 1ic2_A 4 IKKKMQMLKLDKENALDRAE 23 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444333
No 48
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=80.52 E-value=26 Score=29.94 Aligned_cols=34 Identities=24% Similarity=0.360 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 218 EKLKIEEEERKLEAAIEETEKQNAEVNAELKELE 251 (435)
Q Consensus 218 e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le 251 (435)
|+.++...-..|..+|+.+...++.++..|.+++
T Consensus 37 Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e 70 (129)
T 3tnu_B 37 EISEMNRMIQRLRAEIDNVKKQCANLQNAIADAE 70 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4444444455555555555555555555444443
No 49
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=80.18 E-value=6.1 Score=30.21 Aligned_cols=39 Identities=23% Similarity=0.319 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 221 KIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKE 259 (435)
Q Consensus 221 ~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~~ 259 (435)
+-..+...|..+.++|+++..+|..++..|+.|...|.+
T Consensus 20 KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ 58 (63)
T 1ci6_A 20 KKRAEQEALTGECKELEKKNEALKERADSLAKEIQYLKD 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777888888888888888888888877766654
No 50
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=79.89 E-value=15 Score=29.70 Aligned_cols=25 Identities=24% Similarity=0.490 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 228 KLEAAIEETEKQNAEVNAELKELEL 252 (435)
Q Consensus 228 ~L~~eL~~lE~e~~~l~~el~~le~ 252 (435)
++.+.|+++|.+...++..+..++.
T Consensus 10 ~~~~klq~~E~rN~~Le~~v~~le~ 34 (79)
T 3cvf_A 10 ETQQKVQDLETRNAELEHQLRAMER 34 (79)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3334444444444444444444443
No 51
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=78.73 E-value=23 Score=30.38 Aligned_cols=30 Identities=17% Similarity=0.294 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 221 KIEEEERKLEAAIEETEKQNAEVNAELKEL 250 (435)
Q Consensus 221 ~Le~EE~~L~~eL~~lE~e~~~l~~el~~l 250 (435)
.+...-..|..+|+.+...++.++..|.++
T Consensus 42 elrr~iq~L~~el~~l~~~~~sLE~~l~e~ 71 (131)
T 3tnu_A 42 ELRRTMQNLEIELQSQLSMKASLENSLEET 71 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 333344444444444444444444444333
No 52
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=77.86 E-value=22 Score=34.22 Aligned_cols=74 Identities=11% Similarity=0.257 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 220 LKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQ 293 (435)
Q Consensus 220 ~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~~eE~~~w~e~n~~q~qL~~~~ee~~sl~~q~~~~~ 293 (435)
..|..+-..+..+|+-|+-.+.-...||.++..++++|+..-+........++.+-..+++++.-+..+++..+
T Consensus 152 ~~Lkk~~~~i~~~LelL~IRK~ma~sEI~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL~~V~~Rief~q 225 (242)
T 3uux_B 152 SALKSFSQTLVNSLEFLNIQKNSTLSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNLKQIDDRLDFLE 225 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 34566667777888888888888888888888888888877776777677777666666666666666655443
No 53
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=77.16 E-value=12 Score=30.36 Aligned_cols=37 Identities=19% Similarity=0.282 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 218 EKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKS 254 (435)
Q Consensus 218 e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~ 254 (435)
-...|+...+.+..+|+.++++...+..++.+++..+
T Consensus 66 ~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l 102 (107)
T 1fxk_A 66 LTEELQEKLETLQLREKTIERQEERVMKKLQEMQVNI 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444666666666777777777777777666666543
No 54
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=77.10 E-value=39 Score=33.91 Aligned_cols=69 Identities=20% Similarity=0.239 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013864 229 LEAAIEETEKQNAEVNAELKELELKSKRF-KELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 301 (435)
Q Consensus 229 L~~eL~~lE~e~~~l~~el~~le~e~~~L-~~eE~~~w~e~n~~q~qL~~~~ee~~sl~~q~~~~~~qLdkLrk 301 (435)
|.++|.++++...+++++-.......-.| +.+|+ +.+.-+....+++.|..-++.+++.+..++++||+
T Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (471)
T 3mq9_A 402 LQQELTEAQKGFQDVEAQAATANHTVMALMASLDA----EKAQGQKKVEELEGEITTLNHKLQDASAEVERLRR 471 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 44445555555554444433332222222 23333 23333346777788888899999999999999885
No 55
>3ajw_A Flagellar FLIJ protein; flagellum, type III secretion, coiled-coil, protein transpor; 2.10A {Salmonella typhimurium}
Probab=75.83 E-value=35 Score=28.77 Aligned_cols=55 Identities=7% Similarity=0.004 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 013864 218 EKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQ 272 (435)
Q Consensus 218 e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~~eE~~~w~e~n~~q 272 (435)
=+..|+.........+..++.+.+....++.+...+.+.++.+.++...++....
T Consensus 75 fi~~L~~~I~~q~~~l~~~~~~~e~~r~~l~~a~~~~k~~e~L~er~~~~~~~~~ 129 (150)
T 3ajw_A 75 FIQTLEKAIEQHRLQLTQWTQKVDLALKSWREKKQRLQAWQTLQDRQTAAALLAE 129 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455777777777888888888888888888888888888888777777665444
No 56
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=75.53 E-value=41 Score=34.56 Aligned_cols=15 Identities=13% Similarity=0.508 Sum_probs=12.1
Q ss_pred CCCChhHHHHHHHHH
Q 013864 331 IPVEWDEINAAWGQA 345 (435)
Q Consensus 331 ~~V~W~EINAAwGQ~ 345 (435)
-.-.|.|-=.++|..
T Consensus 204 F~R~W~~Yk~GFG~~ 218 (409)
T 1m1j_C 204 FRRNWVQYKEGFGHL 218 (409)
T ss_dssp CCCCHHHHHHCEEEE
T ss_pred ccCCHHHHHhhhCCc
Confidence 345899999999987
No 57
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=75.39 E-value=37 Score=35.92 Aligned_cols=25 Identities=24% Similarity=0.319 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 233 IEETEKQNAEVNAELKELELKSKRF 257 (435)
Q Consensus 233 L~~lE~e~~~l~~el~~le~e~~~L 257 (435)
++.+|++.+++.+||...++-.+++
T Consensus 316 ~~~Aer~~e~a~ael~~a~k~~a~~ 340 (551)
T 2b5u_A 316 VEAAERNYERARAELNQANEDVARN 340 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555554433333
No 58
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=74.81 E-value=27 Score=28.19 Aligned_cols=59 Identities=17% Similarity=0.183 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 013864 216 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQ 274 (435)
Q Consensus 216 ~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~~eE~~~w~e~n~~q~q 274 (435)
...++.+|.+-..|+..+..++.+.+.-..+...++.|++.+-+.=..-..+.++|...
T Consensus 12 ~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqg 70 (79)
T 3cvf_A 12 QQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREG 70 (79)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 34555666666777777777777777776666666666666655444444444444433
No 59
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=74.41 E-value=13 Score=30.33 Aligned_cols=41 Identities=17% Similarity=0.405 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 217 KEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 257 (435)
Q Consensus 217 ~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L 257 (435)
+|+.++...-.....+|.+.++...+|..+++.++.+.++|
T Consensus 31 EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eel 71 (81)
T 1wt6_A 31 REMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444455566666666666666666666655543
No 60
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=73.87 E-value=27 Score=28.08 Aligned_cols=43 Identities=16% Similarity=0.294 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 213 ADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSK 255 (435)
Q Consensus 213 e~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~ 255 (435)
.||....+.|--|...|..||..+..-+..++..+.+++.|++
T Consensus 33 ~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeElk 75 (77)
T 2w83_C 33 NDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEELR 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555555555566666666666666665555555555443
No 61
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=73.82 E-value=37 Score=28.05 Aligned_cols=69 Identities=13% Similarity=0.238 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 228 KLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHL 296 (435)
Q Consensus 228 ~L~~eL~~lE~e~~~l~~el~~le~e~~~L~~eE~~~w~e~n~~q~qL~~~~ee~~sl~~q~~~~~~qL 296 (435)
.+...++.++....+++.++..|..+...++.+=+.+...+...+..|..........++.....+..+
T Consensus 27 ~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~Rri 95 (101)
T 3u1c_A 27 QAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRI 95 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555556666665555555444334444444444444443333333333333333333
No 62
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=73.51 E-value=32 Score=27.27 Aligned_cols=39 Identities=18% Similarity=0.275 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 219 KLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 257 (435)
Q Consensus 219 ~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L 257 (435)
++.+|.+-..|+..+..++...+.-..+...++.|++.+
T Consensus 9 Lq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~ 47 (72)
T 3cve_A 9 LQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTL 47 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444443333
No 63
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=72.88 E-value=48 Score=29.01 Aligned_cols=58 Identities=19% Similarity=0.260 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 180 KLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEV 243 (435)
Q Consensus 180 ~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l 243 (435)
.+..+-+.+..+.+.|..-+..+... .+++..+...|+..-..|..+++++..+.+.+
T Consensus 26 ~l~~eN~~Lk~e~e~l~~~~~~~~~~------~~eL~~~~~~Le~~n~~L~~~lke~~~~~~~l 83 (155)
T 2oto_A 26 RLRHENKDLKARLENAMEVAGRDFKR------AEELEKAKQALEDQRKDLETKLKELQQDYDLA 83 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666777777766555444321 13444555556666666666666666555444
No 64
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=72.61 E-value=15 Score=35.07 Aligned_cols=28 Identities=25% Similarity=0.340 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013864 273 FQLIAHQEERDAISSKIEVSQAHLELLK 300 (435)
Q Consensus 273 ~qL~~~~ee~~sl~~q~~~~~~qLdkLr 300 (435)
.++...+.++.++++++..++.+|+.++
T Consensus 121 ~~~~~~~a~l~~~~a~l~~a~a~l~~a~ 148 (341)
T 3fpp_A 121 TEMAVKQAQIGTIDAQIKRNQASLDTAK 148 (341)
T ss_dssp HHHHHTHHHHHHHHHHHHHTHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455556666666666665544
No 65
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=72.61 E-value=11 Score=30.93 Aligned_cols=45 Identities=18% Similarity=0.266 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHhHHH
Q 013864 228 KLEAAIEETEKQNAEVNAELKELELKSKRF-----KELEERYWQEFNNFQ 272 (435)
Q Consensus 228 ~L~~eL~~lE~e~~~l~~el~~le~e~~~L-----~~eE~~~w~e~n~~q 272 (435)
+|.+++..|+.+..++++++..++.++.+. -+.=-+..++||+.+
T Consensus 5 ~L~~~i~~L~~q~~~L~~ei~~~~a~L~~~~~~~~~~~hI~~Lh~YNeiK 54 (85)
T 3viq_B 5 QLESRVHLLEQQKEQLESSLQDALAKLKNRDAKQTVQKHIDLLHTYNEIR 54 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhHHH
Confidence 344444444444444444444444332221 111114567788775
No 66
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=72.58 E-value=12 Score=36.87 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 230 EAAIEETEKQNAEVNAELKELELKS 254 (435)
Q Consensus 230 ~~eL~~lE~e~~~l~~el~~le~e~ 254 (435)
.++++.|+.+.+++.+|+++|+.+.
T Consensus 184 ~~eie~L~~~~~~L~eEi~~Le~~~ 208 (315)
T 2ve7_A 184 AFKLESLEAKNRALNEQIARLEQER 208 (315)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555443
No 67
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=72.30 E-value=20 Score=34.58 Aligned_cols=30 Identities=13% Similarity=0.214 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013864 272 QFQLIAHQEERDAISSKIEVSQAHLELLKR 301 (435)
Q Consensus 272 q~qL~~~~ee~~sl~~q~~~~~~qLdkLrk 301 (435)
+.++...+.++.++++++..++.+|+.++.
T Consensus 121 ~~~~~~a~a~~~~~~~~l~~~~~~l~~a~~ 150 (369)
T 4dk0_A 121 KATLNNAKAEMDVVQENIKQAEIEVNTAET 150 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455556666666666666666553
No 68
>3opc_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, chaperone; HET: MSE; 2.09A {Bordetella pertussis}
Probab=72.29 E-value=47 Score=28.60 Aligned_cols=111 Identities=14% Similarity=0.182 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHHHhcccccCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHH
Q 013864 188 VTRDIEAYEACLQRLEGEARDVLSE-ADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELK------ELELKSKRFKEL 260 (435)
Q Consensus 188 ~~~E~d~Y~~fL~~L~~~~~~~~~e-e~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~------~le~e~~~L~~e 260 (435)
++.+.+.|..++.-|+++.. .+.. -++ ..+..+-++...+...|..++.++.++.+++. .+..=.. ....
T Consensus 13 L~~~~~~l~~L~~lL~~E~~-~L~~~~d~-~~L~~i~~~K~~ll~~L~~~~~~R~~~l~~lgl~~~~~g~~~~~~-~~~~ 89 (154)
T 3opc_A 13 LERENALVVEFLHALEAETE-ALMDRRAH-ESLQAAVQRKETLADDLAQLGAERDALLSGAGLASGPAGTDAAAA-AHPE 89 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHH-HCGG
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHhcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChhHHHHHHH-hChH
Confidence 45566778888877775542 1212 222 35667788888888888888888887755321 0110001 1111
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhh
Q 013864 261 EERYWQEFNNFQFQLIAHQEERD-AISSKIEVSQAHLELLKR 301 (435)
Q Consensus 261 E~~~w~e~n~~q~qL~~~~ee~~-sl~~q~~~~~~qLdkLrk 301 (435)
=...|.....+-.+..+.-+... -+..++.+.+.-|+-|+.
T Consensus 90 l~~~w~~l~~l~~~c~~~N~~Ng~Li~~~l~~~~~~L~~L~~ 131 (154)
T 3opc_A 90 LGPLWQALQANAAQAREHNQRNGTLIAVNLRHTQESLDALRQ 131 (154)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 13578877766655554433333 235567777777888873
No 69
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=72.11 E-value=40 Score=27.68 Aligned_cols=70 Identities=16% Similarity=0.215 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 228 KLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLE 297 (435)
Q Consensus 228 ~L~~eL~~lE~e~~~l~~el~~le~e~~~L~~eE~~~w~e~n~~q~qL~~~~ee~~sl~~q~~~~~~qLd 297 (435)
.+..+++.++....+++.++..|+.+...++.+=+.+...+...+..|......+...++.....+..+.
T Consensus 27 ~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRriq 96 (101)
T 3u59_A 27 QAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRIQ 96 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555556666666665555554444444444444444444443333333444444444333
No 70
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=71.68 E-value=37 Score=27.34 Aligned_cols=36 Identities=22% Similarity=0.401 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 223 EEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (435)
Q Consensus 223 e~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~ 258 (435)
..--.+|..-|..|++|.++++..+..++.+.++|+
T Consensus 38 ~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~ 73 (78)
T 3iv1_A 38 KKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELS 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344555556666666666666666665544443
No 71
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=71.34 E-value=50 Score=28.56 Aligned_cols=21 Identities=29% Similarity=0.498 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHhhcc
Q 013864 283 DAISSKIEVSQAHLELLKRTN 303 (435)
Q Consensus 283 ~sl~~q~~~~~~qLdkLrktN 303 (435)
.-++.++.-+...+++||+-|
T Consensus 81 ~~Lnq~Lq~a~ae~erlr~~~ 101 (121)
T 3mq7_A 81 TTLNHKLQDASAEVERLRREN 101 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 333333444444444444443
No 72
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=71.23 E-value=20 Score=29.32 Aligned_cols=39 Identities=10% Similarity=0.205 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 221 KIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKE 259 (435)
Q Consensus 221 ~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~~ 259 (435)
+-...+..+..+.++|+++.+.|.+++..|+.|...|..
T Consensus 33 krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ 71 (87)
T 1hjb_A 33 KAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRN 71 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666778888888888888888888877766654
No 73
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=70.59 E-value=1.8 Score=46.20 Aligned_cols=9 Identities=0% Similarity=0.217 Sum_probs=4.3
Q ss_pred HHHHHHHHH
Q 013864 178 SDKLDKEVD 186 (435)
Q Consensus 178 le~Ld~qle 186 (435)
+++|+.|-.
T Consensus 302 ~qqm~~~a~ 310 (575)
T 2i1j_A 302 VQQMKAQAR 310 (575)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 345555443
No 74
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=70.34 E-value=51 Score=28.19 Aligned_cols=69 Identities=19% Similarity=0.195 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 013864 231 AAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTN 303 (435)
Q Consensus 231 ~eL~~lE~e~~~l~~el~~le~e~~~L~~eE~~~w~e~n~~q~qL~~~~ee~~sl~~q~~~~~~qLdkLrktN 303 (435)
+.|.....++.++.+++...++..++..-++.+.---..+|+.+ ...|.-+....+..+.+|..|++-|
T Consensus 38 eaL~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~DF~aE----RadREkl~~eKe~L~~ql~~Lq~q~ 106 (110)
T 2v4h_A 38 EALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAE----RHAREKLVEKKEYLQEQLEQLQREF 106 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc----hhhHHHHHhHHHHHHHHHHHHHHHH
Confidence 33334444444444444444443333333332222222233333 3344556667788888888887754
No 75
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=69.76 E-value=44 Score=27.23 Aligned_cols=15 Identities=13% Similarity=0.226 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHHH
Q 013864 283 DAISSKIEVSQAHLE 297 (435)
Q Consensus 283 ~sl~~q~~~~~~qLd 297 (435)
..++.++.+...++.
T Consensus 87 ~~le~~~~~l~~~l~ 101 (117)
T 2zqm_A 87 NALERQEKKLNEKLK 101 (117)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 76
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=68.52 E-value=4.1 Score=43.35 Aligned_cols=17 Identities=12% Similarity=0.417 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHh
Q 013864 187 DVTRDIEAYEACLQRLE 203 (435)
Q Consensus 187 ~~~~E~d~Y~~fL~~L~ 203 (435)
++++++..|..-|..++
T Consensus 332 ~~~~~~~~~~~~~~~~~ 348 (575)
T 2i1j_A 332 RAEKKQQEYQDRLRQMQ 348 (575)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHH
Confidence 35555666665555554
No 77
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=68.12 E-value=29 Score=30.03 Aligned_cols=19 Identities=26% Similarity=0.289 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 013864 280 EERDAISSKIEVSQAHLEL 298 (435)
Q Consensus 280 ee~~sl~~q~~~~~~qLdk 298 (435)
++-..|..+|.-....||+
T Consensus 71 ~eY~~L~KkYk~~~~~Ld~ 89 (119)
T 2avr_X 71 SQYQELASKYEDALKKLEA 89 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555543
No 78
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=67.83 E-value=57 Score=29.84 Aligned_cols=80 Identities=15% Similarity=0.106 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHhHHHHHHHHHHHHHHHH
Q 013864 216 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEER----------YWQEFNNFQFQLIAHQEERDAI 285 (435)
Q Consensus 216 ~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~~eE~~----------~w~e~n~~q~qL~~~~ee~~sl 285 (435)
..-...|..+..++..+++.||++...++.++..++.+...+++.+.. .--.-..+..|++++..+-.++
T Consensus 48 ~~~~~~l~~g~~~L~~~~~~Le~~~~~L~~~i~~l~~~~~k~~e~~~~~~~~~~diD~~v~~~~~l~~Qll~l~Aed~Ai 127 (174)
T 2p22_A 48 ARFHEIIAIDKNHLRAVEQAIEQTMHSLNAQIDVLTANRAKVQQFSSTSHVDDEDVNSIAVAKTDGLNQLYNLVAQDYAL 127 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTSSCCCSSCGGGTEECSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhcCCcHHHHHHHHHHHHHHHH
Confidence 333445667777777778888888888888777777755544433311 0001123456777777776666
Q ss_pred HHHHHHHHHH
Q 013864 286 SSKIEVSQAH 295 (435)
Q Consensus 286 ~~q~~~~~~q 295 (435)
+.-+-+...-
T Consensus 128 eDaIy~L~~a 137 (174)
T 2p22_A 128 TDTIECLSRM 137 (174)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6655554443
No 79
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=67.10 E-value=51 Score=32.67 Aligned_cols=74 Identities=18% Similarity=0.267 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHhcccccCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 178 SDKLDKEVDDVTR---DIEAYEACLQRLEGEARDVL-SEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELE 251 (435)
Q Consensus 178 le~Ld~qle~~~~---E~d~Y~~fL~~L~~~~~~~~-~ee~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le 251 (435)
.++|+.++..+++ .+-++...|.+|..+....+ +..++...++...+.|+++..+-.++...+++|+.+|+.|-
T Consensus 26 ~eql~~~i~~L~~~ap~W~~aq~al~rL~eq~g~~~~ds~~v~~~mq~~Le~Ere~~~~Rd~~a~~k~~Le~~ierLs 103 (302)
T 3ibp_A 26 QEQLQSRIQSLMQRAPVWLAAQNSLNQLSEQCGEEFTSSQDVTEYLQQLLEREREAIVERDEVGARKNAVDEEIERLS 103 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHChHHHHHHHHHHHHHHHhCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 5566666666655 44556778888876543223 34567666655433336666666666666666666666553
No 80
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=67.04 E-value=21 Score=26.76 Aligned_cols=36 Identities=19% Similarity=0.230 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 223 EEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (435)
Q Consensus 223 e~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~ 258 (435)
......|+.+.+.|+.+..+|..++..|+.|...|.
T Consensus 21 k~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk 56 (61)
T 1t2k_D 21 KVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLK 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455566666666777777666666666655554
No 81
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=66.59 E-value=77 Score=28.88 Aligned_cols=67 Identities=15% Similarity=0.249 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 180 KLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELEL 252 (435)
Q Consensus 180 ~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~ 252 (435)
.|++|++++..-+.+=..--.++++.. .++.+.+..++.--++|...+..|+.++..+++++..|+.
T Consensus 10 ~LekQL~E~n~kLk~EsE~~~rlkK~~------tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa 76 (168)
T 3o0z_A 10 QLQKQLEEANDLLRTESDTAVRLRKSH------TEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQA 76 (168)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777666666555555555432 2333344444444455555555555555555555554443
No 82
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=66.15 E-value=17 Score=36.90 Aligned_cols=14 Identities=7% Similarity=0.306 Sum_probs=6.5
Q ss_pred hHHHHHHHHHHHHH
Q 013864 398 DKAMTLFLSCLKDF 411 (435)
Q Consensus 398 D~AMvaFLdCL~Q~ 411 (435)
++.+.++=+|+.-+
T Consensus 324 NkSL~aLg~vI~aL 337 (403)
T 4etp_A 324 NKSLSALGDVIHAL 337 (403)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444554443
No 83
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=66.13 E-value=35 Score=35.86 Aligned_cols=38 Identities=21% Similarity=0.309 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 216 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELK 253 (435)
Q Consensus 216 ~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e 253 (435)
..++.+|.++.+++..++++|+.++.++.++|.++...
T Consensus 69 ~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~~~~ 106 (501)
T 1wle_A 69 LPGIISTWQELRQLREQIRSLEEEKEAVTEAVRALVVN 106 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34667788888999999999999999999988876543
No 84
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=65.37 E-value=64 Score=27.51 Aligned_cols=84 Identities=13% Similarity=0.196 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 179 DKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (435)
Q Consensus 179 e~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~ 258 (435)
..|+.....+.-|++.|..-++....+... ....+++++..|..+...+...|.+||.....++..-+... .-|.
T Consensus 6 rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~--~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~---~SLe 80 (111)
T 2v66_B 6 RDLQADNQRLKYEVEALKEKLEHQYAQSYK--QVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATI---VSLE 80 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHH---hhHH
Confidence 457888888999999998877766544321 12457788888888888888999998888888876544433 3455
Q ss_pred HHHHHHHHH
Q 013864 259 ELEERYWQE 267 (435)
Q Consensus 259 ~eE~~~w~e 267 (435)
+.|.+|=+.
T Consensus 81 D~E~k~n~a 89 (111)
T 2v66_B 81 DFEQRLNQA 89 (111)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555443
No 85
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=65.00 E-value=64 Score=27.32 Aligned_cols=9 Identities=33% Similarity=0.648 Sum_probs=3.7
Q ss_pred HHHHHHHHh
Q 013864 195 YEACLQRLE 203 (435)
Q Consensus 195 Y~~fL~~L~ 203 (435)
|...+..|.
T Consensus 18 ye~~I~~LR 26 (119)
T 3ol1_A 18 YEEEMRELR 26 (119)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444433
No 86
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=64.66 E-value=26 Score=32.62 Aligned_cols=32 Identities=25% Similarity=0.374 Sum_probs=17.4
Q ss_pred HHHHHhhcccCCCc----eeeeecCCeee------eccccCC
Q 013864 295 HLELLKRTNVLNDA----FPIWHDGEFGT------INNFRLG 326 (435)
Q Consensus 295 qLdkLrktNV~Nd~----F~I~hdG~fGT------INGlRLG 326 (435)
+|-=|+=.|+.++- |.+..-|.=|+ +--|+||
T Consensus 80 ~LTGl~V~~~~ed~~~~~FDc~Qtg~nG~~~~~~~tl~ykL~ 121 (190)
T 4emc_A 80 YLCNVRVHKSYEDDSGLWFDISQGTHSGGSSDDYSIMDYKLG 121 (190)
T ss_dssp HHHSEECCCCCCCSSCEEEEEEESCCC-----CCCCCCEEEE
T ss_pred HccCcEEEEEEEcCCCeEEEEEecCCCCCcCCcceEEEEEEe
Confidence 35556677777754 55545455551 3346666
No 87
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=64.32 E-value=23 Score=35.91 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 013864 231 AAIEETEKQNAEVNAELKELELK 253 (435)
Q Consensus 231 ~eL~~lE~e~~~l~~el~~le~e 253 (435)
.+|+.|+++.+++++++++++.+
T Consensus 10 ~~~~~l~~~~~~l~~~~~~~~~~ 32 (403)
T 4etp_A 10 EKIAALKEKIAALKEKIKDTELG 32 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444433
No 88
>2fup_A Hypothetical protein PA3352; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.48A {Pseudomonas aeruginosa} SCOP: a.47.5.1
Probab=64.25 E-value=30 Score=29.51 Aligned_cols=114 Identities=14% Similarity=0.108 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHH
Q 013864 187 DVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAEL---------KELELKSKRF 257 (435)
Q Consensus 187 ~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el---------~~le~e~~~L 257 (435)
.+.++.+.|..++.-|+++..- +..-+ ...+..+-+++..|..+|..++.++.++.+.+ .++-.. ...
T Consensus 11 ~L~~~~~~l~~L~~lL~~E~~~-L~~~d-~~~L~~i~~~k~~ll~~L~~~~~~R~~~l~~lg~~~~~~~~~~l~~~-~~~ 87 (157)
T 2fup_A 11 LFAEDIGHANQLLQLVDEEFQA-LERRE-LPVLQQLLGAKQPLMQQLERNGRARAEILREAGVSLDREGLARYARE-RAD 87 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHTTC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSHHHHHHHHTT-CTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHcCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHhc-ccc
Confidence 3456677788888777755421 10011 12667788888899999999999988775543 111000 011
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcc
Q 013864 258 KELEERYWQEFNNFQFQLIAHQEERDAI-SSKIEVSQAHLELLKRTN 303 (435)
Q Consensus 258 ~~eE~~~w~e~n~~q~qL~~~~ee~~sl-~~q~~~~~~qLdkLrktN 303 (435)
..+=...|......-.++.+.-+....+ ...+++.+.-|+-|+..+
T Consensus 88 ~~~l~~~~~~l~~l~~~~~~~N~~Ng~Li~~~l~~~~~~L~~L~~~~ 134 (157)
T 2fup_A 88 GAELLARGDELGELLERCQQANLRNGRIIRANQASTGSLLNILRGQD 134 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC--CTTHHHHHHHHHHC---
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 1222357887776666655543333332 456778888888887643
No 89
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=63.96 E-value=31 Score=36.12 Aligned_cols=37 Identities=8% Similarity=0.076 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 216 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELEL 252 (435)
Q Consensus 216 ~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~ 252 (435)
..++.+|.++-+++..++++|..++.++.++|..+..
T Consensus 36 ~d~~~~ld~~~r~~~~~~~~l~~~rN~~sk~i~~~~~ 72 (484)
T 3lss_A 36 VDAIIEADKKWRRTQFLTEASKKLINICSKAVGAKKK 72 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4566778888888999999999999998888877654
No 90
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=63.21 E-value=54 Score=30.64 Aligned_cols=8 Identities=13% Similarity=0.351 Sum_probs=3.9
Q ss_pred HHHHHHHh
Q 013864 151 VLKRAFEI 158 (435)
Q Consensus 151 ~l~~lFdI 158 (435)
++..+||.
T Consensus 122 ~i~elfd~ 129 (213)
T 1ik9_A 122 VIRELIAY 129 (213)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33455554
No 91
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=63.20 E-value=30 Score=35.72 Aligned_cols=91 Identities=14% Similarity=0.230 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 214 DFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQ 293 (435)
Q Consensus 214 ~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~~eE~~~w~e~n~~q~qL~~~~ee~~sl~~q~~~~~ 293 (435)
++..++..|.++.+++..++++|..++.++.++|..+....++. ++...+...+..++.+++++...++.++....
T Consensus 28 ~~~~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (455)
T 2dq0_A 28 KWVDEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPV----DELLAKSREIVKRIGELENEVEELKKKIDYYL 103 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCT----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567778888889999999999999999999888764332111 12333344444444444444444444333222
Q ss_pred HHHHHHhhcccCCCceeeee
Q 013864 294 AHLELLKRTNVLNDAFPIWH 313 (435)
Q Consensus 294 ~qLdkLrktNV~Nd~F~I~h 313 (435)
|+==|+..+.=.|+.
T Consensus 104 -----~~ipN~~~~~vP~g~ 118 (455)
T 2dq0_A 104 -----WRLPNITHPSVPVGK 118 (455)
T ss_dssp -----TTSCCCCCTTSCCCS
T ss_pred -----HhCCCCCCccCCCCC
Confidence 222366655545543
No 92
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=62.68 E-value=51 Score=27.97 Aligned_cols=18 Identities=11% Similarity=0.204 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 013864 280 EERDAISSKIEVSQAHLE 297 (435)
Q Consensus 280 ee~~sl~~q~~~~~~qLd 297 (435)
.+..++++++...+.+|.
T Consensus 82 ~~Vsalq~KiaeLKrqLA 99 (107)
T 2k48_A 82 AAVSTLETKLGELKRQLA 99 (107)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344455555555555543
No 93
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=62.00 E-value=68 Score=26.68 Aligned_cols=22 Identities=23% Similarity=0.373 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 013864 279 QEERDAISSKIEVSQAHLELLK 300 (435)
Q Consensus 279 ~ee~~sl~~q~~~~~~qLdkLr 300 (435)
..+...+..++.+++.++.+|+
T Consensus 67 ~~eKe~L~~ql~~lq~q~~~L~ 88 (94)
T 3jsv_C 67 VEKKEYLQEQLEQLQREFNKLK 88 (94)
T ss_dssp HHTTSHHHHHHHHHHHTTC---
T ss_pred HhHHHHHHHHHHHHHHHHHHHH
Confidence 4444555666666666655554
No 94
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=61.76 E-value=22 Score=37.31 Aligned_cols=88 Identities=18% Similarity=0.156 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 216 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAH 295 (435)
Q Consensus 216 ~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~~eE~~~w~e~n~~q~qL~~~~ee~~sl~~q~~~~~~q 295 (435)
..++..|.++.+++..++++|..++.++.++|..+....++.+ ....+...+ .++...++.++.....+
T Consensus 32 ~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~----~l~~~~~~l-------~~~i~~le~~~~~~~~~ 100 (485)
T 3qne_A 32 VDEIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAK----DLIAEKEKL-------SNEKKEIIEKEAEADKN 100 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCH----HHHHHHHHH-------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHH----HHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 4566778888888999999999999988888877654321111 122233333 44444444444444444
Q ss_pred HHHHhh--cccCCCceeeeec
Q 013864 296 LELLKR--TNVLNDAFPIWHD 314 (435)
Q Consensus 296 LdkLrk--tNV~Nd~F~I~hd 314 (435)
|+.+-- =|+..+.=.|+-|
T Consensus 101 ~~~~l~~iPN~~~~~vP~g~~ 121 (485)
T 3qne_A 101 LRSKINQVGNIVHESVVDSQD 121 (485)
T ss_dssp HHHHHTTSCCCCCTTSCCCSC
T ss_pred HHHHHHhCCCCCCccCCCCCC
Confidence 433222 4777766666643
No 95
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=61.55 E-value=28 Score=27.82 Aligned_cols=39 Identities=10% Similarity=0.163 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 220 LKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (435)
Q Consensus 220 ~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~ 258 (435)
++-...+..+..+.++|+++...|..++..|+.|...|.
T Consensus 32 ~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr 70 (78)
T 1gu4_A 32 DKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLR 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555666778888899999999998888888877664
No 96
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=61.19 E-value=33 Score=27.24 Aligned_cols=13 Identities=23% Similarity=0.388 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHhh
Q 013864 289 IEVSQAHLELLKR 301 (435)
Q Consensus 289 ~~~~~~qLdkLrk 301 (435)
+...+.+||+++.
T Consensus 56 I~~LqseLDKfrS 68 (72)
T 3nmd_A 56 IQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhhc
Confidence 3444455565554
No 97
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=60.86 E-value=61 Score=25.69 Aligned_cols=65 Identities=18% Similarity=0.246 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 228 KLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELL 299 (435)
Q Consensus 228 ~L~~eL~~lE~e~~~l~~el~~le~e~~~L~~eE~~~w~e~n~~q~qL~~~~ee~~sl~~q~~~~~~qLdkL 299 (435)
++.+.|+++|.+...++..+..++..++.=.... +.++.++..+.+.++.-...+......|.+|
T Consensus 4 ~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q-------~~~~~Elk~~~e~Ld~KI~eL~elrq~LakL 68 (72)
T 3cve_A 4 NSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQ-------DAFRSNLKTLLEILDGKIFELTELRDNLAKL 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 3557778888888888887777776655443322 3344444444444444444444445555554
No 98
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=60.86 E-value=64 Score=25.96 Aligned_cols=19 Identities=16% Similarity=0.305 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 013864 230 EAAIEETEKQNAEVNAELK 248 (435)
Q Consensus 230 ~~eL~~lE~e~~~l~~el~ 248 (435)
+.+|..+..+++.+..|+.
T Consensus 6 r~qi~~l~~e~~~l~~e~d 24 (86)
T 3swk_A 6 RRQVDQLTNDKARVEVERD 24 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHH
Confidence 3333333333333333333
No 99
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=60.85 E-value=25 Score=26.58 Aligned_cols=34 Identities=15% Similarity=0.322 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 225 EERKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (435)
Q Consensus 225 EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~ 258 (435)
....|..+.+.|+.+...|..++..|+.+...|.
T Consensus 24 ~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk 57 (63)
T 2wt7_A 24 LTDTLQAETDQLEDEKSALQTEIANLLKEKEKLE 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555666666666666666666655554443
No 100
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=60.51 E-value=38 Score=28.45 Aligned_cols=27 Identities=22% Similarity=0.263 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013864 177 LSDKLDKEVDDVTRDIEAYEACLQRLE 203 (435)
Q Consensus 177 Lle~Ld~qle~~~~E~d~Y~~fL~~L~ 203 (435)
=+..+.++++.++.|++...+..+.|+
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE 39 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLE 39 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666666666666666554
No 101
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=60.36 E-value=21 Score=25.63 Aligned_cols=29 Identities=14% Similarity=0.354 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 229 LEAAIEETEKQNAEVNAELKELELKSKRF 257 (435)
Q Consensus 229 L~~eL~~lE~e~~~l~~el~~le~e~~~L 257 (435)
|.+.+..+.+|.+..+++|.+++.+...|
T Consensus 7 l~qkI~kVdrEI~Kte~kI~~lqkKlkeL 35 (42)
T 2l5g_B 7 LIQNMDRVDREITMVEQQISKLKKKQQQL 35 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555556666665554444
No 102
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=60.19 E-value=23 Score=36.19 Aligned_cols=30 Identities=27% Similarity=0.270 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 222 IEEEERKLEAAIEETEKQNAEVNAELKELE 251 (435)
Q Consensus 222 Le~EE~~L~~eL~~lE~e~~~l~~el~~le 251 (435)
|+.|..+|.+++++++++.+++.++++.++
T Consensus 8 l~~el~~~~~~~~~l~~~~~~~~~~~~~~~ 37 (412)
T 3u06_A 8 LSTEVVHLRQRTEELLRCNEQQAAELETCK 37 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444555555554444444444443
No 103
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=59.67 E-value=49 Score=29.17 Aligned_cols=15 Identities=20% Similarity=0.220 Sum_probs=1.6
Q ss_pred HHHHHHHHHHHHHHh
Q 013864 286 SSKIEVSQAHLELLK 300 (435)
Q Consensus 286 ~~q~~~~~~qLdkLr 300 (435)
...++..+.||..|+
T Consensus 116 e~ll~~lq~QL~~LK 130 (135)
T 2e7s_A 116 DMLLDTLTLQLKNLK 130 (135)
T ss_dssp HHCC-----------
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444555565555
No 104
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=59.50 E-value=45 Score=31.74 Aligned_cols=30 Identities=10% Similarity=0.123 Sum_probs=15.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 268 FNNFQFQLIAHQEERDAISSKIEVSQAHLE 297 (435)
Q Consensus 268 ~n~~q~qL~~~~ee~~sl~~q~~~~~~qLd 297 (435)
+...+.++...+.++..+.++++.++.+|+
T Consensus 123 ~~~~~a~l~~~~a~l~~a~a~l~~a~~~l~ 152 (341)
T 3fpp_A 123 MAVKQAQIGTIDAQIKRNQASLDTAKTNLD 152 (341)
T ss_dssp HHHTHHHHHHHHHHHHHTHHHHTTTTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 333444455555555555666665555553
No 105
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=58.68 E-value=13 Score=24.44 Aligned_cols=25 Identities=32% Similarity=0.389 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 233 IEETEKQNAEVNAELKELELKSKRF 257 (435)
Q Consensus 233 L~~lE~e~~~l~~el~~le~e~~~L 257 (435)
-+.||+.++.++..+..++.+++.|
T Consensus 3 wealekkcaalesklqalekkleal 27 (31)
T 3ljm_A 3 WEALEKKCAALESKLQALEKKLEAL 27 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777777777776665554
No 106
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=58.64 E-value=66 Score=28.05 Aligned_cols=112 Identities=17% Similarity=0.269 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 180 KLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLK-EKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (435)
Q Consensus 180 ~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~-e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~ 258 (435)
.|.+.+..++++...+..-++.+..........+-+.. -...|+..+.+| ..|++|.....+++.++..++.++..++
T Consensus 10 ~l~~KvAElekkv~~lek~lk~~~e~d~e~y~ke~~~~~~qsele~k~aeL-e~leeL~~ki~eL~~kvA~le~e~~~~e 88 (125)
T 2pms_C 10 APQAKIAELENQVHRLEQELKEIDESESEDYAKEGFRAPLQSKLDAKKAKL-SKLEELSDKIDELDAEIAKLEDQLKAAE 88 (125)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTTTCC------------CHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888888888777665533221100011100 001122222222 1235566666777777777776666554
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 259 ELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELL 299 (435)
Q Consensus 259 ~eE~~~w~e~n~~q~qL~~~~ee~~sl~~q~~~~~~qLdkL 299 (435)
.... ... .-+..++..+..-.+.++-++..|+.+
T Consensus 89 ~~~~-----~~~--~~~e~le~~la~KkAEleKtqa~Ld~a 122 (125)
T 2pms_C 89 ENNN-----VED--YFKEGLEKTIAAKKAELEKTEADLKKA 122 (125)
T ss_dssp C---------CH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccc-----chH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3110 000 012333444444455556666666654
No 107
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=58.08 E-value=83 Score=26.40 Aligned_cols=82 Identities=11% Similarity=0.251 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc----cccc--------------CCC--------------HHHHHHHHHHHH
Q 013864 176 VLSDKLDKEVDDVTRDIEAYEACLQRLEG----EARD--------------VLS--------------EADFLKEKLKIE 223 (435)
Q Consensus 176 ~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~----~~~~--------------~~~--------------ee~l~~e~~~Le 223 (435)
..++.+..++..+......|...++.|+. ...+ ..+ +-++.+.+.-++
T Consensus 15 ~~~~~l~~~~~~l~~~i~e~~~~~e~l~~l~~~~~~~~lvplg~~~yv~a~i~~~~~V~v~lG~g~~vE~~~~eA~~~l~ 94 (133)
T 1fxk_C 15 SQVELIQQQMEAVRATISELEILEKTLSDIQGKDGSETLVPVGAGSFIKAELKDTSEVIMSVGAGVAIKKNFEDAMESIK 94 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCEEEEEEETTEEEEEECCSTTEEEEEEETTEEEEEEHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCeEEEEcCCCcEEEEEECCCCEEEEEcCCCEEEEeeHHHHHHHHH
Confidence 34556666677777777778777766652 1100 000 112234444566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 224 EEERKLEAAIEETEKQNAEVNAELKELELKSKRF 257 (435)
Q Consensus 224 ~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L 257 (435)
...+.+...++.++++.+.+.+++..++.++.++
T Consensus 95 ~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~ 128 (133)
T 1fxk_C 95 SQKNELESTLQKMGENLRAITDIMMKLSPQAEEL 128 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666777777777777777777777776665444
No 108
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=57.55 E-value=76 Score=25.76 Aligned_cols=38 Identities=21% Similarity=0.334 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 221 KIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (435)
Q Consensus 221 ~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~ 258 (435)
.|-+|.+.|.-.+.++|.|+.+.+..|+.-++|+..|.
T Consensus 23 ~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq 60 (81)
T 3qh9_A 23 ELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQ 60 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 46677777888888888888888877777765555443
No 109
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=57.19 E-value=23 Score=23.66 Aligned_cols=21 Identities=14% Similarity=0.316 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 013864 237 EKQNAEVNAELKELELKSKRF 257 (435)
Q Consensus 237 E~e~~~l~~el~~le~e~~~L 257 (435)
.+|.+.+..|+..|+-|+..|
T Consensus 8 kqeiaalkkeiaalkfeiaal 28 (33)
T 4dzn_A 8 KQEIAALKKEIAALKFEIAAL 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444443
No 110
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=57.15 E-value=71 Score=25.30 Aligned_cols=46 Identities=24% Similarity=0.261 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 013864 230 EAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQL 275 (435)
Q Consensus 230 ~~eL~~lE~e~~~l~~el~~le~e~~~L~~eE~~~w~e~n~~q~qL 275 (435)
...+..+.+|++++...++.++.+...+.++|.+.-.....|..+|
T Consensus 3 ~k~v~~l~~E~eel~~klk~~~ee~~~~~eee~~~~~~k~~lek~L 48 (71)
T 1uix_A 3 TSDVANLANEKEELNNKLKEAQEQLSRLKDEEISAAAIKAQFEKQL 48 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777777777777777776655544333333444443
No 111
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=56.65 E-value=90 Score=26.36 Aligned_cols=24 Identities=29% Similarity=0.278 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 227 RKLEAAIEETEKQNAEVNAELKEL 250 (435)
Q Consensus 227 ~~L~~eL~~lE~e~~~l~~el~~l 250 (435)
.-|.-.|+++|...+++..+.++.
T Consensus 33 dlLKD~LEe~eE~~aql~Re~~eK 56 (103)
T 4h22_A 33 DTLKDMLLELEEQLAESRRQYEEK 56 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444333333
No 112
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=56.26 E-value=28 Score=33.52 Aligned_cols=32 Identities=16% Similarity=0.220 Sum_probs=20.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 267 EFNNFQFQLIAHQEERDAISSKIEVSQAHLEL 298 (435)
Q Consensus 267 e~n~~q~qL~~~~ee~~sl~~q~~~~~~qLdk 298 (435)
.+...+.++...+.++..++++++.++.+|++
T Consensus 123 ~~~~a~a~~~~~~~~l~~~~~~l~~a~~~l~~ 154 (369)
T 4dk0_A 123 TLNNAKAEMDVVQENIKQAEIEVNTAETNLGY 154 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34444555566666677777777777776643
No 113
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=56.21 E-value=93 Score=26.39 Aligned_cols=29 Identities=14% Similarity=0.236 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 223 EEEERKLEAAIEETEKQNAEVNAELKELE 251 (435)
Q Consensus 223 e~EE~~L~~eL~~lE~e~~~l~~el~~le 251 (435)
+.|..++...|..|+.+.+.+......|+
T Consensus 35 k~Ei~elrr~iq~L~~el~~l~~~~~~LE 63 (129)
T 3tnu_B 35 KHEISEMNRMIQRLRAEIDNVKKQCANLQ 63 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 33444444444444444444444333333
No 114
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=56.13 E-value=1e+02 Score=26.72 Aligned_cols=29 Identities=21% Similarity=0.399 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 230 EAAIEETEKQNAEVNAELKELELKSKRFK 258 (435)
Q Consensus 230 ~~eL~~lE~e~~~l~~el~~le~e~~~L~ 258 (435)
.+.+++|+.|...++++|.++.++.++|.
T Consensus 70 q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr 98 (121)
T 3mq7_A 70 QKKVEELEGEITTLNHKLQDASAEVERLR 98 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777777777777777666666654
No 115
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=55.14 E-value=68 Score=27.67 Aligned_cols=14 Identities=36% Similarity=0.396 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHH
Q 013864 284 AISSKIEVSQAHLE 297 (435)
Q Consensus 284 sl~~q~~~~~~qLd 297 (435)
.+-.+|.-...+|+
T Consensus 75 ~l~k~Y~~~~keLd 88 (119)
T 3etw_A 75 ELASKYEDALKKLE 88 (119)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444443
No 116
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=55.01 E-value=79 Score=28.24 Aligned_cols=20 Identities=20% Similarity=0.150 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHhhcccCCCc
Q 013864 289 IEVSQAHLELLKRTNVLNDA 308 (435)
Q Consensus 289 ~~~~~~qLdkLrktNV~Nd~ 308 (435)
+......+.+|..-|-+.++
T Consensus 96 ~~~LeAE~aKLeEekQIseA 115 (146)
T 2xnx_M 96 KEQLTIEKAKLEEEKQISDA 115 (146)
T ss_dssp HHHHHHHHHHHGGGTTTC--
T ss_pred HHHHHHHHHHHHHHHHHhHH
Confidence 33455667777777766654
No 117
>3ter_A Mammalian stromal interaction molecule-1; dimer, metal binding protein; 2.55A {Caenorhabditis elegans}
Probab=54.99 E-value=65 Score=28.45 Aligned_cols=44 Identities=5% Similarity=0.119 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cCCCceeeeec
Q 013864 271 FQFQLIAHQEERDAISSKIEVSQAHLELLKRTN-VLNDAFPIWHD 314 (435)
Q Consensus 271 ~q~qL~~~~ee~~sl~~q~~~~~~qLdkLrktN-V~Nd~F~I~hd 314 (435)
++.+...+...+.....++..|....+||+|.+ -+=-+|++-|.
T Consensus 43 ~E~E~q~~~~kk~~Aekql~~Ake~~eKlkKKrsSv~gs~~~aHs 87 (136)
T 3ter_A 43 CENEMAFLEKQRQDCFKEMKEAIEMVDRLQKKQGSVLSSLKLATG 87 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------CCCCCCS
T ss_pred hHHHHHHHHHccccHHHHHHHHHHHHHHHHHhhhchheeeeeecC
Confidence 344445556677778889999999999999873 23345555554
No 118
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=54.64 E-value=21 Score=26.52 Aligned_cols=28 Identities=18% Similarity=0.223 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 220 LKIEEEERKLEAAIEETEKQNAEVNAEL 247 (435)
Q Consensus 220 ~~Le~EE~~L~~eL~~lE~e~~~l~~el 247 (435)
.+|..|-.+|.+++++|.++.+++.+++
T Consensus 22 eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 22 ELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666666655544
No 119
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=54.48 E-value=22 Score=29.86 Aligned_cols=32 Identities=28% Similarity=0.395 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 225 EERKLEAAIEETEKQNAEVNAELKELELKSKR 256 (435)
Q Consensus 225 EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~ 256 (435)
+-..|.++|+.|+.|...|.+++..|+.++..
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777777777777777766544
No 120
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=53.27 E-value=17 Score=27.39 Aligned_cols=35 Identities=23% Similarity=0.325 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 224 EEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (435)
Q Consensus 224 ~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~ 258 (435)
.....|+.+++.|+.+..+|..++..|+.+...|.
T Consensus 22 ~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk 56 (62)
T 1jnm_A 22 ERIARLEEKVKTLKAQNSELASTANMLREQVAQLK 56 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666677777777776666666655443
No 121
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=52.07 E-value=28 Score=29.28 Aligned_cols=34 Identities=6% Similarity=0.130 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 226 ERKLEAAIEETEKQNAEVNAELKELELKSKRFKE 259 (435)
Q Consensus 226 E~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~~ 259 (435)
...|.+||+.|+.+...|++.|..++..++.+.+
T Consensus 8 ~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~~lte 41 (106)
T 2aze_B 8 LEGLTQDLRQLQESEQQLDHLMNICTTQLRLLSE 41 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3456666777777777777777766666665554
No 122
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=52.07 E-value=88 Score=24.90 Aligned_cols=21 Identities=24% Similarity=0.256 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 013864 218 EKLKIEEEERKLEAAIEETEK 238 (435)
Q Consensus 218 e~~~Le~EE~~L~~eL~~lE~ 238 (435)
|+..|+.+..+|++++.+|+.
T Consensus 23 Ele~le~~Ie~LE~~i~~le~ 43 (89)
T 2lw1_A 23 ELEQLPQLLEDLEAKLEALQT 43 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444433
No 123
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=51.45 E-value=1.2e+02 Score=26.36 Aligned_cols=20 Identities=5% Similarity=-0.044 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 013864 181 LDKEVDDVTRDIEAYEACLQ 200 (435)
Q Consensus 181 Ld~qle~~~~E~d~Y~~fL~ 200 (435)
|+.+.+.+..+...+..-..
T Consensus 34 Lk~e~e~l~~~~~~~~~~~~ 53 (155)
T 2oto_A 34 LKARLENAMEVAGRDFKRAE 53 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHH
Confidence 55555555444444433333
No 124
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=50.19 E-value=45 Score=25.31 Aligned_cols=29 Identities=14% Similarity=0.168 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 216 LKEKLKIEEEERKLEAAIEETEKQNAEVN 244 (435)
Q Consensus 216 ~~e~~~Le~EE~~L~~eL~~lE~e~~~l~ 244 (435)
..+...|+.+-..|..++..|+.|...+.
T Consensus 29 e~~~~~L~~~N~~L~~~i~~L~~E~~~Lk 57 (63)
T 1ci6_A 29 TGECKELEKKNEALKERADSLAKEIQYLK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444445555555544444443
No 125
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=49.86 E-value=83 Score=32.94 Aligned_cols=24 Identities=29% Similarity=0.429 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 225 EERKLEAAIEETEKQNAEVNAELK 248 (435)
Q Consensus 225 EE~~L~~eL~~lE~e~~~l~~el~ 248 (435)
+-+.|.++|+++|.+..++++++.
T Consensus 79 ~~~~l~~~i~~le~~~~~~~~~~~ 102 (485)
T 3qne_A 79 EKEKLSNEKKEIIEKEAEADKNLR 102 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444443
No 126
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=49.41 E-value=78 Score=25.84 Aligned_cols=9 Identities=11% Similarity=0.320 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 013864 242 EVNAELKEL 250 (435)
Q Consensus 242 ~l~~el~~l 250 (435)
.++.+|...
T Consensus 62 ~le~~i~rh 70 (84)
T 1gmj_A 62 RLQKEIERH 70 (84)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 127
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=48.94 E-value=93 Score=32.05 Aligned_cols=26 Identities=19% Similarity=0.312 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 224 EEERKLEAAIEETEKQNAEVNAELKE 249 (435)
Q Consensus 224 ~EE~~L~~eL~~lE~e~~~l~~el~~ 249 (435)
++-+.+.++|++++.+..++++++..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (455)
T 2dq0_A 76 AKSREIVKRIGELENEVEELKKKIDY 101 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444433
No 128
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=48.85 E-value=98 Score=24.47 Aligned_cols=35 Identities=31% Similarity=0.280 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 228 KLEAAIEETEKQNAEVNAELKELELKSKRFKELEE 262 (435)
Q Consensus 228 ~L~~eL~~lE~e~~~l~~el~~le~e~~~L~~eE~ 262 (435)
.|...+..+.+|.+++...++.++.+...+.++|.
T Consensus 3 ~L~k~i~~l~~E~eel~~klk~~~ee~~~~~eee~ 37 (71)
T 1s1c_X 3 MLTKDIEILRRENEELTEKMKKAEEEYKLEKEEEI 37 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777778888888888888777777764443
No 129
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=48.44 E-value=46 Score=33.95 Aligned_cols=34 Identities=9% Similarity=0.049 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 225 EERKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (435)
Q Consensus 225 EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~ 258 (435)
|...|..||.++.+..++++++++.++.+.+.+.
T Consensus 4 ~~~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~ 37 (412)
T 3u06_A 4 MHAALSTEVVHLRQRTEELLRCNEQQAAELETCK 37 (412)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666666666665544443
No 130
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=47.96 E-value=42 Score=31.01 Aligned_cols=22 Identities=14% Similarity=0.182 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 013864 276 IAHQEERDAISSKIEVSQAHLE 297 (435)
Q Consensus 276 ~~~~ee~~sl~~q~~~~~~qLd 297 (435)
...+.++.+++++++.++.+|+
T Consensus 108 ~~a~a~l~~a~a~l~~a~~~l~ 129 (277)
T 2f1m_A 108 QQANAAVTAAKAAVETARINLA 129 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 3334444455555555554443
No 131
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=47.81 E-value=46 Score=33.89 Aligned_cols=34 Identities=18% Similarity=0.393 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 216 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKE 249 (435)
Q Consensus 216 ~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~ 249 (435)
..++..+.++.+++..++++|+.++.++.++|.+
T Consensus 27 ~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~ 60 (421)
T 1ses_A 27 LEALLALDREVQELKKRLQEVQTERNQVAKRVPK 60 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3566677888888889999999888888888765
No 132
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=47.66 E-value=1.3e+02 Score=25.50 Aligned_cols=43 Identities=12% Similarity=0.312 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 013864 230 EAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQ 272 (435)
Q Consensus 230 ~~eL~~lE~e~~~l~~el~~le~e~~~L~~eE~~~w~e~n~~q 272 (435)
.++|.+...+.+++.+++.+++...+.++.+-.-||.-..+.+
T Consensus 10 ~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkERDFYF~KLRdIE 52 (106)
T 4e61_A 10 QAELTKSQETIGSLNEEIEQYKGTVSTLEIEREFYFNKLRDIE 52 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555666666555555554444554444433
No 133
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=47.57 E-value=28 Score=23.98 Aligned_cols=25 Identities=20% Similarity=0.407 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 227 RKLEAAIEETEKQNAEVNAELKELE 251 (435)
Q Consensus 227 ~~L~~eL~~lE~e~~~l~~el~~le 251 (435)
....++|++++++.+.|+.+++.||
T Consensus 10 ~a~qqDIddlkrQN~~Le~Qir~le 34 (34)
T 1a93_B 10 DTHQQDIDDLKRQNALLEQQVRALX 34 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HhhHhhHHHHHHHHHHHHHHHHhcC
Confidence 4456778888888888877776653
No 134
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=47.38 E-value=1.3e+02 Score=25.60 Aligned_cols=37 Identities=19% Similarity=0.209 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 256 RFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVS 292 (435)
Q Consensus 256 ~L~~eE~~~w~e~n~~q~qL~~~~ee~~sl~~q~~~~ 292 (435)
.|.++-..|-+-.++.+.+|..+...|..+..++...
T Consensus 60 ~L~~Lqq~fsq~q~~vq~qL~~Lt~~Re~V~~eL~rL 96 (112)
T 1x79_B 60 LLEELQQGLSQAKRDVQEQMAVLMQSREQVSEELVRL 96 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666666666666666666666555543333
No 135
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=46.68 E-value=2e+02 Score=29.37 Aligned_cols=18 Identities=17% Similarity=0.073 Sum_probs=11.5
Q ss_pred HHHHHHHHHHhhcCCCCC
Q 013864 344 QACLLLHTMCQYFRPKFP 361 (435)
Q Consensus 344 Q~~LLL~tla~kl~~kF~ 361 (435)
|-=.|+.+++..|-...+
T Consensus 184 qqKQL~qv~a~~llP~~~ 201 (390)
T 1deq_A 184 QQKQLEQVIAINLLPSRD 201 (390)
T ss_pred HHHHHHhhhhhccccccc
Confidence 333488888887755443
No 136
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=46.63 E-value=81 Score=25.14 Aligned_cols=18 Identities=11% Similarity=0.058 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 013864 223 EEEERKLEAAIEETEKQN 240 (435)
Q Consensus 223 e~EE~~L~~eL~~lE~e~ 240 (435)
-.+...+.++|+++....
T Consensus 62 ~~~l~~~e~eLe~~~erW 79 (89)
T 2lw1_A 62 LADMAAAEQELEQAFERW 79 (89)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333344444443333
No 137
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=45.84 E-value=1.4e+02 Score=26.36 Aligned_cols=31 Identities=16% Similarity=0.145 Sum_probs=14.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 211 SEADFLKEKLKIEEEERKLEAAIEETEKQNA 241 (435)
Q Consensus 211 ~ee~l~~e~~~Le~EE~~L~~eL~~lE~e~~ 241 (435)
++++-.+.+.+|++|-+...+++++.-++.+
T Consensus 86 seeeQ~~ri~~Le~E~~~~~~el~~~v~eae 116 (151)
T 1yke_B 86 SAEEQLRKIDMLQKKLVEVEDEKIEAIKKKE 116 (151)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445445555555555544444444433333
No 138
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=45.62 E-value=1.2e+02 Score=30.93 Aligned_cols=29 Identities=17% Similarity=0.367 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013864 175 RVLSDKLDKEVDDVTRDIEAYEACLQRLEG 204 (435)
Q Consensus 175 d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~ 204 (435)
+.+++ ++.+...+..+.+..++--+.+.+
T Consensus 28 ~~~~~-~~~~~r~~~~~~~~l~~~~n~~sk 56 (421)
T 1ses_A 28 EALLA-LDREVQELKKRLQEVQTERNQVAK 56 (421)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44443 555555555555555554444443
No 139
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=45.37 E-value=40 Score=27.48 Aligned_cols=36 Identities=14% Similarity=0.326 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 214 DFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKE 249 (435)
Q Consensus 214 ~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~ 249 (435)
++..+...|+.|-..|..+|++|++|...+..-+..
T Consensus 40 e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~ 75 (87)
T 1hjb_A 40 ETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQ 75 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666666777777666666665554443
No 140
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=45.35 E-value=77 Score=24.06 Aligned_cols=35 Identities=23% Similarity=0.329 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 218 EKLKIEEEERKLEAAIEETEKQNAEVNAELKELEL 252 (435)
Q Consensus 218 e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~ 252 (435)
.+.+|++--..|...+..||..+.+.++||..|.+
T Consensus 12 q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~ 46 (58)
T 3a2a_A 12 QLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNK 46 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777888899999999999998888877764
No 141
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=45.17 E-value=18 Score=23.37 Aligned_cols=21 Identities=24% Similarity=0.433 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 013864 237 EKQNAEVNAELKELELKSKRF 257 (435)
Q Consensus 237 E~e~~~l~~el~~le~e~~~L 257 (435)
.+..+.+.+||..|+-|+..|
T Consensus 6 kqknarlkqeiaaleyeiaal 26 (28)
T 3ra3_B 6 KQKNARLKQEIAALEYEIAAL 26 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHHHh
Confidence 334444444455554444443
No 142
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=45.01 E-value=1.3e+02 Score=24.93 Aligned_cols=21 Identities=38% Similarity=0.485 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhc
Q 013864 282 RDAISSKIEVSQAHLELLKRT 302 (435)
Q Consensus 282 ~~sl~~q~~~~~~qLdkLrkt 302 (435)
|.-+....+..+.+|..|++-
T Consensus 63 REkl~~eKe~L~~ql~~lq~q 83 (94)
T 3jsv_C 63 REKLVEKKEYLQEQLEQLQRE 83 (94)
T ss_dssp HHHHHHTTSHHHHHHHHHHHT
T ss_pred HHHHHhHHHHHHHHHHHHHHH
Confidence 334445555566666666654
No 143
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=44.32 E-value=28 Score=27.69 Aligned_cols=31 Identities=19% Similarity=0.416 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 219 KLKIEEEERKLEAAIEETEKQNAEVNAELKE 249 (435)
Q Consensus 219 ~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~ 249 (435)
+..|+.++.++..+++.|.++...+.++|..
T Consensus 49 I~~L~~~~~~l~~e~~~L~~e~~~L~~~L~~ 79 (80)
T 1nlw_A 49 IKKLEDSDRKAVHQIDQLQREQRHLKRQLEK 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3456777777777777777777776666543
No 144
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=44.27 E-value=1.5e+02 Score=25.29 Aligned_cols=8 Identities=25% Similarity=0.355 Sum_probs=0.4
Q ss_pred HHHHHhhc
Q 013864 295 HLELLKRT 302 (435)
Q Consensus 295 qLdkLrkt 302 (435)
+|.+|++-
T Consensus 92 eL~rLQ~e 99 (112)
T 1x79_B 92 ELVRLQKD 99 (112)
T ss_dssp C-------
T ss_pred HHHHHHhh
Confidence 33444433
No 145
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=44.25 E-value=66 Score=31.98 Aligned_cols=15 Identities=13% Similarity=0.461 Sum_probs=11.8
Q ss_pred CCCChhHHHHHHHHH
Q 013864 331 IPVEWDEINAAWGQA 345 (435)
Q Consensus 331 ~~V~W~EINAAwGQ~ 345 (435)
-.-.|.|-=.+.|..
T Consensus 126 F~R~W~~Yk~GFG~~ 140 (323)
T 1lwu_C 126 FTRDWVSYREGFGYL 140 (323)
T ss_dssp CCCCHHHHHHCEEEE
T ss_pred ccCCHHHHhhhhCCc
Confidence 345899999999886
No 146
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=44.22 E-value=1.4e+02 Score=24.91 Aligned_cols=20 Identities=10% Similarity=0.375 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 013864 181 LDKEVDDVTRDIEAYEACLQ 200 (435)
Q Consensus 181 Ld~qle~~~~E~d~Y~~fL~ 200 (435)
+..++..++.+...+..-++
T Consensus 10 lre~l~~le~~~~~~~~e~~ 29 (97)
T 2eqb_B 10 LKEDYNTLKRELSDRDDEVK 29 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHH
Confidence 44444444444444333333
No 147
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=42.97 E-value=3.1e+02 Score=28.57 Aligned_cols=27 Identities=11% Similarity=0.147 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013864 178 SDKLDKEVDDVTRDIEAYEACLQRLEG 204 (435)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~fL~~L~~ 204 (435)
.+-|-++-+.+.++++.-+..|..|+.
T Consensus 88 ~D~L~k~q~~V~~~LqeLe~~l~~lsn 114 (464)
T 1m1j_B 88 QTTLLKQEKTVKPVLRDLKDRVAKFSD 114 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhHhHHHHHHHHHHHHhh
Confidence 455555556666777777777777754
No 148
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=42.19 E-value=1.4e+02 Score=24.44 Aligned_cols=27 Identities=19% Similarity=0.300 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 231 AAIEETEKQNAEVNAELKELELKSKRF 257 (435)
Q Consensus 231 ~eL~~lE~e~~~l~~el~~le~e~~~L 257 (435)
+.|.+++...++.+.-|..++.|...+
T Consensus 49 ~~i~~ie~~ldEA~eLl~qMelE~r~~ 75 (102)
T 2qyw_A 49 KLVRDFDEKQQEANETLAEMEEELRYA 75 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 345555555555555555555555444
No 149
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=42.10 E-value=1.7e+02 Score=25.23 Aligned_cols=32 Identities=16% Similarity=0.153 Sum_probs=15.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 211 SEADFLKEKLKIEEEERKLEAAIEETEKQNAE 242 (435)
Q Consensus 211 ~ee~l~~e~~~Le~EE~~L~~eL~~lE~e~~~ 242 (435)
++++-.+.+.+|++|-+...+++++.-++.+.
T Consensus 86 see~Q~~ri~~L~~E~~~~~~el~~~v~e~e~ 117 (132)
T 1ykh_B 86 SAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEK 117 (132)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44554455555555555555554444443333
No 150
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=42.03 E-value=1.8e+02 Score=25.58 Aligned_cols=23 Identities=9% Similarity=0.245 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 013864 181 LDKEVDDVTRDIEAYEACLQRLE 203 (435)
Q Consensus 181 Ld~qle~~~~E~d~Y~~fL~~L~ 203 (435)
...+|+.+++.-+.-.+-.+.|+
T Consensus 22 a~~kLeeaek~adE~eR~~k~lE 44 (147)
T 2b9c_A 22 ALQKLEEAEKAADESERGMKVIE 44 (147)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555444455554
No 151
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=41.84 E-value=72 Score=24.00 Aligned_cols=24 Identities=21% Similarity=0.371 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 220 LKIEEEERKLEAAIEETEKQNAEV 243 (435)
Q Consensus 220 ~~Le~EE~~L~~eL~~lE~e~~~l 243 (435)
..|+.+-..|..+|..|..+...+
T Consensus 33 ~~L~~~n~~L~~ei~~L~~e~~~L 56 (63)
T 2wt7_A 33 DQLEDEKSALQTEIANLLKEKEKL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444433333
No 152
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=41.82 E-value=44 Score=24.76 Aligned_cols=22 Identities=9% Similarity=0.081 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 013864 217 KEKLKIEEEERKLEAAIEETEK 238 (435)
Q Consensus 217 ~e~~~Le~EE~~L~~eL~~lE~ 238 (435)
.|...|+.+-..|.++++++.+
T Consensus 26 ~E~~eLk~k~~~L~~~~~el~~ 47 (53)
T 2yy0_A 26 LELAEMKEKYEAIVEENKKLKA 47 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444433
No 153
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=41.66 E-value=3.2e+02 Score=28.43 Aligned_cols=16 Identities=25% Similarity=0.642 Sum_probs=12.0
Q ss_pred CCCCChhHHHHHHHHH
Q 013864 330 KIPVEWDEINAAWGQA 345 (435)
Q Consensus 330 ~~~V~W~EINAAwGQ~ 345 (435)
+--=.|+|-=.++|.+
T Consensus 266 ~F~R~W~~Yk~GFG~~ 281 (464)
T 1m1j_B 266 NFGRAWDEYKRGFGNI 281 (464)
T ss_dssp CCCCCHHHHHHCEECC
T ss_pred ccccCHHHHHHHhCCc
Confidence 3345899998888876
No 154
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=41.63 E-value=3.5e+02 Score=28.78 Aligned_cols=16 Identities=6% Similarity=0.192 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHhhc
Q 013864 287 SKIEVSQAHLELLKRT 302 (435)
Q Consensus 287 ~q~~~~~~qLdkLrkt 302 (435)
++....+++++.|++.
T Consensus 567 ~~~~~~~~ei~~l~~~ 582 (592)
T 1f5n_A 567 KESRIMKNEIQDLQTK 582 (592)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4555666777777776
No 155
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=41.56 E-value=1.4e+02 Score=25.50 Aligned_cols=30 Identities=17% Similarity=0.185 Sum_probs=15.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 210 LSEADFLKEKLKIEEEERKLEAAIEETEKQ 239 (435)
Q Consensus 210 ~~ee~l~~e~~~Le~EE~~L~~eL~~lE~e 239 (435)
++-++|++|+...|.+.-...+.|++.++.
T Consensus 22 ~~ieeLq~Ei~~~E~QL~~ArQKLkdA~~~ 51 (113)
T 4fi5_A 22 MTMEELQREINAHEGQLVIARQKVRDAEKQ 51 (113)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556655555555554444444444433
No 156
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=41.55 E-value=65 Score=23.98 Aligned_cols=24 Identities=8% Similarity=0.166 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 220 LKIEEEERKLEAAIEETEKQNAEV 243 (435)
Q Consensus 220 ~~Le~EE~~L~~eL~~lE~e~~~l 243 (435)
..|+.+-..|..++..|..|...+
T Consensus 32 ~~L~~~n~~L~~~i~~L~~e~~~L 55 (61)
T 1t2k_D 32 EDLSSLNGQLQSEVTLLRNEVAQL 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444433
No 157
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=41.51 E-value=29 Score=27.33 Aligned_cols=30 Identities=13% Similarity=0.318 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 220 LKIEEEERKLEAAIEETEKQNAEVNAELKE 249 (435)
Q Consensus 220 ~~Le~EE~~L~~eL~~lE~e~~~l~~el~~ 249 (435)
..|+.+...|..++++|.++...+.+++..
T Consensus 50 ~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~ 79 (83)
T 1nkp_B 50 QYMRRKNHTHQQDIDDLKRQNALLEQQVRA 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666666666555543
No 158
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=40.96 E-value=38 Score=27.33 Aligned_cols=32 Identities=25% Similarity=0.397 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 219 KLKIEEEERKLEAAIEETEKQNAEVNAELKEL 250 (435)
Q Consensus 219 ~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~l 250 (435)
+..|+.++.++..+++.|.++...|.++|.+|
T Consensus 54 I~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L 85 (88)
T 1nkp_A 54 ILSVQAEEQKLISEEDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45577777777788887777777777776665
No 159
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=40.87 E-value=1.4e+02 Score=24.13 Aligned_cols=27 Identities=15% Similarity=0.310 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 231 AAIEETEKQNAEVNAELKELELKSKRF 257 (435)
Q Consensus 231 ~eL~~lE~e~~~l~~el~~le~e~~~L 257 (435)
+.|.+++....+...-|..++.|...+
T Consensus 34 ~~i~~ie~~ldEA~ell~qMelE~~~~ 60 (97)
T 3onj_A 34 TTLKHVEQQQDELFDLLDQMDVEVNNS 60 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 334555555555555555555555444
No 160
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=40.56 E-value=1.6e+02 Score=24.55 Aligned_cols=30 Identities=17% Similarity=0.343 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 224 EEERKLEAAIEETEKQNAEVNAELKELELK 253 (435)
Q Consensus 224 ~EE~~L~~eL~~lE~e~~~l~~el~~le~e 253 (435)
.|..+|..+|.+-...+..++.+...++.|
T Consensus 26 ~e~~~L~~~l~eE~~~R~~aE~~~~~ie~E 55 (97)
T 2eqb_B 26 DEVKRLREDIAKENELRTKAEEEADKLNKE 55 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444433333333344444444433
No 161
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=39.66 E-value=37 Score=29.99 Aligned_cols=16 Identities=13% Similarity=0.279 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 013864 181 LDKEVDDVTRDIEAYE 196 (435)
Q Consensus 181 Ld~qle~~~~E~d~Y~ 196 (435)
....+...+..+..|.
T Consensus 20 ~~~~~~~le~l~~~l~ 35 (135)
T 2e7s_A 20 QKAAIENYNQLKEDYN 35 (135)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444333333
No 162
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=39.07 E-value=65 Score=21.46 Aligned_cols=22 Identities=27% Similarity=0.360 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 013864 229 LEAAIEETEKQNAEVNAELKEL 250 (435)
Q Consensus 229 L~~eL~~lE~e~~~l~~el~~l 250 (435)
|.+|+..|.+|.+.+.=|+..|
T Consensus 7 lkqeiaalkkeiaalkfeiaal 28 (33)
T 4dzn_A 7 LKQEIAALKKEIAALKFEIAAL 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444
No 163
>3tkl_B LIDA protein, substrate of the DOT/ICM system; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Legionella pneumophila}
Probab=38.98 E-value=62 Score=30.91 Aligned_cols=46 Identities=22% Similarity=0.290 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc--ccCCCHHHHHHHHHHH
Q 013864 177 LSDKLDKEVDDVTRDIEAYEACLQRLEGEA--RDVLSEADFLKEKLKI 222 (435)
Q Consensus 177 Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~--~~~~~ee~l~~e~~~L 222 (435)
=++.|++|-..++...+.|..-|....+.. .+.++.+++.+++.++
T Consensus 43 rl~kLE~qq~~lt~KY~~Ye~sL~eF~~~sd~yeal~~e~ine~i~~~ 90 (267)
T 3tkl_B 43 KLDKLERQGKDLEDKYKTYEENLEGFEKLLTDSEELSLSEINEKMKAF 90 (267)
T ss_dssp --------------------------------CCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhcCHHHHHHHHHHH
Confidence 355666666677777777887777665433 2345566665444433
No 164
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=38.93 E-value=1e+02 Score=21.96 Aligned_cols=21 Identities=29% Similarity=0.438 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 013864 227 RKLEAAIEETEKQNAEVNAEL 247 (435)
Q Consensus 227 ~~L~~eL~~lE~e~~~l~~el 247 (435)
..|+.||..+|+..+.+...+
T Consensus 23 aaleselqalekklaalkskl 43 (48)
T 1g6u_A 23 AALESELQALEKKLAALKSKL 43 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555554444433
No 165
>2ykt_A Brain-specific angiogenesis inhibitor 1-associate protein 2; signaling protein, NPY motif, binding pocket; 2.11A {Homo sapiens} PDB: 1y2o_A 1wdz_A
Probab=38.89 E-value=2.6e+02 Score=26.53 Aligned_cols=111 Identities=20% Similarity=0.280 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH-HHHHHHHH
Q 013864 179 DKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQN-AEVNAELK-ELELKSKR 256 (435)
Q Consensus 179 e~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~lE~e~-~~l~~el~-~le~e~~~ 256 (435)
..+.+.+..+..=-.+|...++++...........++-..+.++-..-+.+...++..-+.. .++-..|+ .++.-.+.
T Consensus 39 ~kY~~al~~~~~a~~~f~dal~kia~~A~~s~gs~elG~~L~~i~~~~r~ie~~l~~~~~~~~~~li~pL~~kie~d~K~ 118 (253)
T 2ykt_A 39 KNYEKALAGVTYAAKGYFDALVKMGELASESQGSKELGDVLFQMAEVHRQIQNQLEEMLKSFHNELLTQLEQKVELDSRY 118 (253)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 45677777777777778888877764322211225666666666555555555555443332 12222222 23444455
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 013864 257 FKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTN 303 (435)
Q Consensus 257 L~~eE~~~w~e~n~~q~qL~~~~ee~~sl~~q~~~~~~qLdkLrktN 303 (435)
+...++.|+++|....-. ++-++..+-||+|..
T Consensus 119 v~~~~K~~~~e~k~~~~~--------------l~K~~~e~~kl~KK~ 151 (253)
T 2ykt_A 119 LSAALKKYQTEQRSKGDA--------------LDKCQAELKKLRKKS 151 (253)
T ss_dssp HHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHhHhH--------------HHHHHHHHHHHHhhc
Confidence 667777777777654333 455566677777653
No 166
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=38.24 E-value=17 Score=37.06 Aligned_cols=91 Identities=12% Similarity=0.239 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 214 DFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQ 293 (435)
Q Consensus 214 ~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~~eE~~~w~e~n~~q~qL~~~~ee~~sl~~q~~~~~ 293 (435)
++..++..|.++.+++..++++|..++.++.++|..+....++. +....+...+..++.+++++...++.++....
T Consensus 27 ~~~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (425)
T 2dq3_A 27 SLVDKVLELDKRRREIIKRLEALRSERNKLSKEIGKLKREGKDT----TEIQNRVKELKEEIDRLEEELRKVEEELKNTL 102 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSSCSCT----TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567778888999999999999999999988887653321110 11222333344444444444444444433222
Q ss_pred HHHHHHhhcccCCCceeeee
Q 013864 294 AHLELLKRTNVLNDAFPIWH 313 (435)
Q Consensus 294 ~qLdkLrktNV~Nd~F~I~h 313 (435)
|+=-|+.++.=.++.
T Consensus 103 -----~~ipN~~~~~vp~g~ 117 (425)
T 2dq3_A 103 -----LWIPNLPHPSVPVGE 117 (425)
T ss_dssp -----HTSCCCCCTTSCCCS
T ss_pred -----HhCCCCCCCCCCCCC
Confidence 233566666555543
No 167
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=38.03 E-value=1.6e+02 Score=23.73 Aligned_cols=18 Identities=17% Similarity=0.222 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 013864 280 EERDAISSKIEVSQAHLE 297 (435)
Q Consensus 280 ee~~sl~~q~~~~~~qLd 297 (435)
.+...+++++...+.+|.
T Consensus 52 ~~V~~lq~Ki~elkrqlA 69 (78)
T 2ic6_A 52 AAVSALETKLGELKRELA 69 (78)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344445555555555543
No 168
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=37.86 E-value=38 Score=32.77 Aligned_cols=23 Identities=26% Similarity=0.349 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 013864 231 AAIEETEKQNAEVNAELKELELK 253 (435)
Q Consensus 231 ~eL~~lE~e~~~l~~el~~le~e 253 (435)
.++..|+.+.+.|.+++++++.|
T Consensus 61 ~ql~~L~arNe~L~~~Lk~ar~E 83 (251)
T 3m9b_A 61 ARIDSLAARNSKLMETLKEARQQ 83 (251)
T ss_dssp HHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 169
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=37.56 E-value=1.6e+02 Score=24.55 Aligned_cols=10 Identities=20% Similarity=0.282 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 013864 246 ELKELELKSK 255 (435)
Q Consensus 246 el~~le~e~~ 255 (435)
||++|+.++.
T Consensus 55 EI~~L~~eI~ 64 (96)
T 1t3j_A 55 EIARLSKEID 64 (96)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 170
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=37.00 E-value=1e+02 Score=25.07 Aligned_cols=24 Identities=21% Similarity=0.266 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 227 RKLEAAIEETEKQNAEVNAELKEL 250 (435)
Q Consensus 227 ~~L~~eL~~lE~e~~~l~~el~~l 250 (435)
..-.++|+.+|++.......|+.|
T Consensus 54 ~~h~~ei~~le~~i~rhk~~i~~l 77 (84)
T 1gmj_A 54 SHHAKEIERLQKEIERHKQSIKKL 77 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333344444444444444444443
No 171
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=36.76 E-value=1.1e+02 Score=25.09 Aligned_cols=9 Identities=11% Similarity=0.073 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 013864 248 KELELKSKR 256 (435)
Q Consensus 248 ~~le~e~~~ 256 (435)
..++.++..
T Consensus 47 ~~lE~eL~~ 55 (95)
T 3mov_A 47 TDKEREMAE 55 (95)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 172
>3etv_A Protein transport protein TIP20,linker,protein transport protein DSL1; TIP20P-DSL1P complex, endoplasmic reticulum, ER-golgi transport; 1.94A {Saccharomyces cerevisiae} PDB: 3etu_A
Probab=36.74 E-value=1.1e+02 Score=31.02 Aligned_cols=87 Identities=14% Similarity=0.146 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 181 LDKEVDDVTRDIEAYEACLQRLEGEARDVLSEA--DFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (435)
Q Consensus 181 Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee--~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~ 258 (435)
++.+++++++||+.-..-|+..+.......++. +....+..|.+++..|.+||..+- +.+-+..=|.+.+... +|-
T Consensus 14 id~~I~~i~~eRd~La~~lq~~~~~~~~~~~~~~~~~~~d~e~llkre~~Lt~EL~~l~-~LK~Vs~Li~EfktN~-ell 91 (355)
T 3etv_A 14 INDRIKQVQNERNELASKLQNLKQSLASNDTGGGSGGGSDSSDLLQREAILANELNILD-NLKTFLNLIKEVKTNL-NIL 91 (355)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC---------------------CTTHHHHHHHHHHHH-HHHHHHHHHHHHHHHH-HTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcccccccccCCCcchhhHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHhhH-HHH
Confidence 789999999999999999988774221111111 222334456666666777765442 2333333333333321 233
Q ss_pred HHHHHHHHHHh
Q 013864 259 ELEERYWQEFN 269 (435)
Q Consensus 259 ~eE~~~w~e~n 269 (435)
++|.-|+-..|
T Consensus 92 ElENCyYSLqn 102 (355)
T 3etv_A 92 ELENCYYSLQS 102 (355)
T ss_dssp CHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 56666665444
No 173
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=36.01 E-value=1.7e+02 Score=23.50 Aligned_cols=64 Identities=16% Similarity=0.275 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 175 RVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVN 244 (435)
Q Consensus 175 d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~ 244 (435)
|.|--.|...+.+...|.++..+--+.|.... ..|..-+.+|+.|+..+...++-+....+++.
T Consensus 10 DKLRrrl~E~~~q~qaEl~sLrrT~~EL~~G~------~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~ 73 (78)
T 3iv1_A 10 DKLRWRMKEEMDRAQAELNALKRTEEDLKKGH------QKLEEMVTRLDQEVAEVDKNIELLKKKDEELS 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555554444333333211 12333445566666666666666665555554
No 174
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=35.95 E-value=2.1e+02 Score=24.50 Aligned_cols=17 Identities=24% Similarity=0.356 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 013864 221 KIEEEERKLEAAIEETE 237 (435)
Q Consensus 221 ~Le~EE~~L~~eL~~lE 237 (435)
.|..|-..|..+|+.+.
T Consensus 19 ~Lkreie~lk~ele~l~ 35 (120)
T 3i00_A 19 RLYREISGLKAQLENMK 35 (120)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34555555555555543
No 175
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=35.82 E-value=1.6e+02 Score=30.88 Aligned_cols=22 Identities=5% Similarity=-0.062 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 013864 181 LDKEVDDVTRDIEAYEACLQRL 202 (435)
Q Consensus 181 Ld~qle~~~~E~d~Y~~fL~~L 202 (435)
+..+++.+.++++.-.+-+..+
T Consensus 49 ~~~~~~~l~~~rN~~sk~i~~~ 70 (484)
T 3lss_A 49 TQFLTEASKKLINICSKAVGAK 70 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555544443
No 176
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=35.80 E-value=4.3e+02 Score=28.11 Aligned_cols=18 Identities=22% Similarity=0.287 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 013864 278 HQEERDAISSKIEVSQAH 295 (435)
Q Consensus 278 ~~ee~~sl~~q~~~~~~q 295 (435)
|+++...+.+++...+.+
T Consensus 565 ~~~~~~~~~~ei~~l~~~ 582 (592)
T 1f5n_A 565 FQKESRIMKNEIQDLQTK 582 (592)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 555666666666666655
No 177
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=35.62 E-value=2.7e+02 Score=29.04 Aligned_cols=20 Identities=15% Similarity=0.124 Sum_probs=13.6
Q ss_pred hHHHHHHHHHHHHHHHHHhh
Q 013864 398 DKAMTLFLSCLKDFAEFANS 417 (435)
Q Consensus 398 D~AMvaFLdCL~Q~~e~v~~ 417 (435)
+.++..|-.++.-..++..+
T Consensus 345 e~s~~~~e~~l~~~~~il~~ 364 (501)
T 1wle_A 345 EQSSELLEEFLSLQMEILTE 364 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 47888887777666666543
No 178
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=34.39 E-value=1.4e+02 Score=22.01 Aligned_cols=35 Identities=20% Similarity=0.302 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 218 EKLKIEEEERKLEAAIEETEKQNAEVNAELKELEL 252 (435)
Q Consensus 218 e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~ 252 (435)
.+.+|++--..|...+.+|+..+.++++|+..|.+
T Consensus 5 ~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~ 39 (48)
T 3vmx_A 5 QILRLKQINIQLATKIQHLEFSCSEKEQEIERLNK 39 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 45567777777888888888888888887776654
No 179
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=33.63 E-value=2.4e+02 Score=24.62 Aligned_cols=20 Identities=10% Similarity=0.215 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 013864 178 SDKLDKEVDDVTRDIEAYEA 197 (435)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~ 197 (435)
.+.|+++-++...|+..|.+
T Consensus 28 ~e~l~kE~e~k~eeKkkiLa 47 (133)
T 1j1d_C 28 KQELEREAEERRGEKGRALS 47 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777655
No 180
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=32.89 E-value=1.6e+02 Score=28.44 Aligned_cols=48 Identities=21% Similarity=0.236 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHh
Q 013864 220 LKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQ-EFN 269 (435)
Q Consensus 220 ~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~~eE~~~w~-e~n 269 (435)
.++++.-.++..++.++++++.++++++.+++....-++.+ ..|. .++
T Consensus 95 ~~~e~~~~~l~~~~~~l~~~~~~L~~~~~~l~~~~~~l~~L--~p~~~~ld 143 (357)
T 3rrk_A 95 EEAEAVLRPVASRAEVLGKERAALEEEIQTIELFGKAAEKL--AALAHGLD 143 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH--hhhhccCC
Confidence 34455566666777777777777777777777663223333 3566 444
No 181
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=32.83 E-value=77 Score=24.77 Aligned_cols=28 Identities=36% Similarity=0.451 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 230 EAAIEETEKQNAEVNAELKELELKSKRF 257 (435)
Q Consensus 230 ~~eL~~lE~e~~~l~~el~~le~e~~~L 257 (435)
...+.+||.+..+.+++|.+|+.++.++
T Consensus 24 de~I~eLE~~L~~kd~eI~eLr~~LdK~ 51 (67)
T 1zxa_A 24 EERIKELEKRLSEKEEEIQELKRKLHKC 51 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666666554443
No 182
>3tnf_B LIDA, RAS-related protein RAB-8A; protein transport, vesicular trafficking, GTPase, vesicle recuitment, LCV, DRRA, SIDM; HET: GNP; 2.50A {Legionella pneumophila subsp}
Probab=32.52 E-value=1.1e+02 Score=30.41 Aligned_cols=48 Identities=21% Similarity=0.264 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--ccCCCHHHHHHHHHHH
Q 013864 175 RVLSDKLDKEVDDVTRDIEAYEACLQRLEGEA--RDVLSEADFLKEKLKI 222 (435)
Q Consensus 175 d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~--~~~~~ee~l~~e~~~L 222 (435)
+.=++.|++|-..++...+.|..-|....+.. .+.++.+++..++.++
T Consensus 24 ~~rl~kLE~qq~~lt~KY~~Ye~sL~eF~~~sd~yeal~~e~ine~ie~l 73 (384)
T 3tnf_B 24 EKKLDKLERQGKDLEDKYKTYEENLEGFEKLLTDSEELSLSEINEKMEAF 73 (384)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHHHHTSHHHHTTCCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHhHHHHHHhcchhhhcCHHHHHHHHHHH
Confidence 34456777777788888888888777665433 3355666665554444
No 183
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=32.50 E-value=2.3e+02 Score=23.95 Aligned_cols=13 Identities=23% Similarity=0.348 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q 013864 232 AIEETEKQNAEVN 244 (435)
Q Consensus 232 eL~~lE~e~~~l~ 244 (435)
|++.|..+..++.
T Consensus 19 e~~~l~~~~~el~ 31 (125)
T 1joc_A 19 EIEKLQTKVLELQ 31 (125)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 3333333333333
No 184
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=32.35 E-value=63 Score=33.04 Aligned_cols=7 Identities=14% Similarity=0.582 Sum_probs=5.1
Q ss_pred CCChhHH
Q 013864 332 PVEWDEI 338 (435)
Q Consensus 332 ~V~W~EI 338 (435)
.|.|+.|
T Consensus 168 ~v~~~di 174 (428)
T 4b4t_K 168 DVTYADV 174 (428)
T ss_dssp SCCGGGS
T ss_pred CCCHHHh
Confidence 4788876
No 185
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=32.22 E-value=2.2e+02 Score=23.71 Aligned_cols=9 Identities=11% Similarity=0.268 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 013864 285 ISSKIEVSQ 293 (435)
Q Consensus 285 l~~q~~~~~ 293 (435)
+++++...+
T Consensus 57 lq~Ki~elk 65 (96)
T 2ic9_A 57 LETKLGELK 65 (96)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 186
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=31.98 E-value=1.2e+02 Score=29.15 Aligned_cols=32 Identities=19% Similarity=0.350 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 221 KIEEEERKLEAAIEETEKQNAEVNAELKELEL 252 (435)
Q Consensus 221 ~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~ 252 (435)
.|..-.+.+.+.|..+|++...|+.+|..++.
T Consensus 188 ~L~~mR~~vl~RLA~lEqdEl~LE~eL~~V~~ 219 (242)
T 3uux_B 188 NLRQKKEKLLGKIANIEQNQLLLEDNLKQIDD 219 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 33333344444444445544444444444443
No 187
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=31.90 E-value=4.3e+02 Score=26.97 Aligned_cols=29 Identities=14% Similarity=0.053 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013864 273 FQLIAHQEERDAISSKIEVSQAHLELLKR 301 (435)
Q Consensus 273 ~qL~~~~ee~~sl~~q~~~~~~qLdkLrk 301 (435)
.++..++....++..+++..+.++..|..
T Consensus 105 ~~i~~l~~~~~~~~~~i~~l~~~i~~l~~ 133 (409)
T 1m1j_C 105 NTIQQLTDMHIMNSNKITQLKQKIAQLES 133 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 34444555555566666666666666654
No 188
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=31.70 E-value=85 Score=21.85 Aligned_cols=21 Identities=19% Similarity=0.311 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 013864 234 EETEKQNAEVNAELKELELKS 254 (435)
Q Consensus 234 ~~lE~e~~~l~~el~~le~e~ 254 (435)
+.|.++.++.+.||..|+.+-
T Consensus 10 ekLhk~ie~KdeeIa~Lk~eN 30 (37)
T 1t6f_A 10 EKLHKEIEQKDNEIARLKKEN 30 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 334444444444444444433
No 189
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=31.43 E-value=2.5e+02 Score=24.02 Aligned_cols=20 Identities=20% Similarity=0.415 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 013864 175 RVLSDKLDKEVDDVTRDIEA 194 (435)
Q Consensus 175 d~Lle~Ld~qle~~~~E~d~ 194 (435)
|.+|+.|+.+++.+..+.+.
T Consensus 14 D~~Ie~Lkreie~lk~ele~ 33 (120)
T 3i00_A 14 DHLIERLYREISGLKAQLEN 33 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56777777777766555444
No 190
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=31.30 E-value=2.4e+02 Score=23.91 Aligned_cols=33 Identities=18% Similarity=0.336 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 229 LEAAIEETEKQNAEVNAELKELELKSKRFKELE 261 (435)
Q Consensus 229 L~~eL~~lE~e~~~l~~el~~le~e~~~L~~eE 261 (435)
|..+|..|...+..+...|++|+..-..|+..+
T Consensus 40 Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~ 72 (111)
T 2v66_B 40 LEDDLSQTRAIKEQLHKYVRELEQANDDLERAK 72 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHH
Confidence 444444444444444444444444444444333
No 191
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=30.75 E-value=58 Score=31.48 Aligned_cols=7 Identities=43% Similarity=0.596 Sum_probs=2.8
Q ss_pred ccCCCCC
Q 013864 323 FRLGRLP 329 (435)
Q Consensus 323 lRLGrlp 329 (435)
+|..-.|
T Consensus 122 ~~V~Vsp 128 (251)
T 3m9b_A 122 MRLTCSP 128 (251)
T ss_dssp CEECBCT
T ss_pred EEEEeCC
Confidence 3444333
No 192
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=30.64 E-value=4.4e+02 Score=26.73 Aligned_cols=22 Identities=18% Similarity=0.025 Sum_probs=8.3
Q ss_pred eccccCCCCCCCCCChhHHHHHH
Q 013864 320 INNFRLGRLPKIPVEWDEINAAW 342 (435)
Q Consensus 320 INGlRLGrlp~~~V~W~EINAAw 342 (435)
|+..+-|--| .++...+.+..+
T Consensus 287 i~~~gtG~~~-~~p~Fe~y~~~~ 308 (486)
T 3haj_A 287 RANHGPGMAM-NWPQFEEWSADL 308 (486)
T ss_dssp HHHHSTTSCC-CCCCC-------
T ss_pred HHHhCCCCCC-CCCCceeCCchh
Confidence 5556666544 355555555433
No 193
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=30.42 E-value=2.9e+02 Score=24.48 Aligned_cols=39 Identities=21% Similarity=0.311 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 213 ADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELE 251 (435)
Q Consensus 213 e~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le 251 (435)
+.+.+....|....++|..++..++++...+..+|+..-
T Consensus 10 e~lr~~~~~L~~~~r~Ldr~~~kle~~ekk~~~~Ikka~ 48 (179)
T 2gd5_A 10 ELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAA 48 (179)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566777777777777777777777777666553
No 194
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens}
Probab=30.10 E-value=3.2e+02 Score=24.85 Aligned_cols=22 Identities=14% Similarity=0.184 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 013864 181 LDKEVDDVTRDIEAYEACLQRL 202 (435)
Q Consensus 181 Ld~qle~~~~E~d~Y~~fL~~L 202 (435)
++..+..+.+-++.|....+.+
T Consensus 131 ~~~~~~~l~Kak~~Y~~~c~e~ 152 (276)
T 2v0o_A 131 IQSITQALQKSKENYNAKCVEQ 152 (276)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444455555444333
No 195
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=30.07 E-value=1.9e+02 Score=22.26 Aligned_cols=41 Identities=17% Similarity=0.313 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 221 KIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELE 261 (435)
Q Consensus 221 ~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~~eE 261 (435)
+++.-...-++.+.+|-+-...+.+||+.++.++..|..+.
T Consensus 17 evK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen 57 (63)
T 2w6a_A 17 ELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAEN 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhh
Confidence 34444444456677777777777888888887777766543
No 196
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=29.92 E-value=1e+02 Score=29.88 Aligned_cols=33 Identities=6% Similarity=-0.056 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 214 DFLKEKLKIEEEERKLEAAIEETEKQNAEVNAE 246 (435)
Q Consensus 214 ~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~e 246 (435)
++.+.+.++..+-..+.+++.+|+.+..++.+.
T Consensus 96 ~~e~~~~~l~~~~~~l~~~~~~L~~~~~~l~~~ 128 (357)
T 3rrk_A 96 EAEAVLRPVASRAEVLGKERAALEEEIQTIELF 128 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 344444445555555555555555555555554
No 197
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=29.83 E-value=2.7e+02 Score=23.91 Aligned_cols=42 Identities=19% Similarity=0.241 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 216 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 257 (435)
Q Consensus 216 ~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L 257 (435)
.+.+.-++...+.+...++.+++..+.+.+++..++..+.++
T Consensus 97 ~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l 138 (151)
T 2zdi_C 97 DEAISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEV 138 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445666666667777777777777777666666655444
No 198
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=29.77 E-value=3.4e+02 Score=25.15 Aligned_cols=47 Identities=11% Similarity=0.157 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhHHHHHHHHHH
Q 013864 233 IEETEKQNAEVNAELKELELKSKRFK-ELEERYWQEFNNFQFQLIAHQ 279 (435)
Q Consensus 233 L~~lE~e~~~l~~el~~le~e~~~L~-~eE~~~w~e~n~~q~qL~~~~ 279 (435)
.+.++.+..++.++++++-....+++ ++=.+|-...|+-+..+.+++
T Consensus 148 ~~~l~~~~~~l~~qlE~~v~~K~~~E~~L~~KF~~lLNeKK~KIR~lq 195 (213)
T 1ik9_A 148 NERLLRDWNDVQGRFEKAVSAKEALETDLYKRFILVLNEKKTKIRSLH 195 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 33344444444444444433322222 223355556666665554444
No 199
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=29.65 E-value=2.3e+02 Score=23.18 Aligned_cols=27 Identities=11% Similarity=0.271 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 232 AIEETEKQNAEVNAELKELELKSKRFK 258 (435)
Q Consensus 232 eL~~lE~e~~~l~~el~~le~e~~~L~ 258 (435)
+...||.+...+..+++.|..|..++.
T Consensus 49 q~~~LE~e~~~L~~e~~~L~~e~~~~~ 75 (90)
T 2wt7_B 49 QKHHLENEKTQLIQQVEQLKQEVSRLA 75 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444433
No 200
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=29.65 E-value=3.2e+02 Score=24.80 Aligned_cols=15 Identities=13% Similarity=-0.037 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHH
Q 013864 173 CMRVLSDKLDKEVDD 187 (435)
Q Consensus 173 C~d~Lle~Ld~qle~ 187 (435)
+...+.+.++..+.+
T Consensus 109 ~~~~~~~~~~~~~~d 123 (251)
T 2fic_A 109 EANKIAENNDLLWMD 123 (251)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 333344444433333
No 201
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=29.62 E-value=5.2e+02 Score=27.23 Aligned_cols=54 Identities=15% Similarity=0.248 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 013864 233 IEETEKQNAEVNAELKELELKSK----RFKELEERYWQEFNNFQFQLIAHQEERDAIS 286 (435)
Q Consensus 233 L~~lE~e~~~l~~el~~le~e~~----~L~~eE~~~w~e~n~~q~qL~~~~ee~~sl~ 286 (435)
+.+...+.+++.+|-++++++-+ ..+..-++|-++.-.++.++.+.+.++..-+
T Consensus 36 ~ae~~a~n~~i~aeNeaikkrNa~aka~Ye~~l~kY~~dlakY~~~~AeY~~kl~aYe 93 (497)
T 3iox_A 36 VAANNAANAALTAENTAIKKRNADAKADYEAKLAKYQADLAKYQKDLADYPVKLKAYE 93 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444455555555442221 1233334566666777766666655544443
No 202
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=29.28 E-value=73 Score=24.19 Aligned_cols=25 Identities=28% Similarity=0.453 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 227 RKLEAAIEETEKQNAEVNAELKELE 251 (435)
Q Consensus 227 ~~L~~eL~~lE~e~~~l~~el~~le 251 (435)
..|..+++.|+.+...|..++..|.
T Consensus 33 ~~Le~~v~~L~~eN~~L~~ev~~Lr 57 (63)
T 2dgc_A 33 KQLEDKVEELLSKNYHLENEVARLK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555444443
No 203
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=29.26 E-value=1e+02 Score=30.65 Aligned_cols=7 Identities=14% Similarity=0.624 Sum_probs=3.0
Q ss_pred ceeeeec
Q 013864 308 AFPIWHD 314 (435)
Q Consensus 308 ~F~I~hd 314 (435)
.|.+.+|
T Consensus 100 pf~V~CD 106 (323)
T 1lwu_C 100 PFLVFCE 106 (323)
T ss_dssp CEEEEEE
T ss_pred cEEEEEe
Confidence 3444443
No 204
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=29.05 E-value=2.4e+02 Score=25.67 Aligned_cols=44 Identities=14% Similarity=0.142 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013864 258 KELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 301 (435)
Q Consensus 258 ~~eE~~~w~e~n~~q~qL~~~~ee~~sl~~q~~~~~~qLdkLrk 301 (435)
..-++.+-+..+.++.....++.++..++..+.....+.++++.
T Consensus 48 ~~~~~~l~~g~~~L~~~~~~Le~~~~~L~~~i~~l~~~~~k~~e 91 (174)
T 2p22_A 48 ARFHEIIAIDKNHLRAVEQAIEQTMHSLNAQIDVLTANRAKVQQ 91 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444455556666666666777777777777776666554
No 205
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=29.03 E-value=1.6e+02 Score=21.04 Aligned_cols=19 Identities=16% Similarity=0.282 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 013864 233 IEETEKQNAEVNAELKELE 251 (435)
Q Consensus 233 L~~lE~e~~~l~~el~~le 251 (435)
|..+|.|...++..+..++
T Consensus 22 laaleselqalekklaalk 40 (48)
T 1g6u_A 22 LAALESELQALEKKLAALK 40 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444443333333333
No 206
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=28.80 E-value=4.9e+02 Score=26.67 Aligned_cols=28 Identities=25% Similarity=0.445 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013864 177 LSDKLDKEVDDVTRDIEAYEACLQRLEG 204 (435)
Q Consensus 177 Lle~Ld~qle~~~~E~d~Y~~fL~~L~~ 204 (435)
|-+-|-++-..+.++.+.-+.-|+.+..
T Consensus 25 l~d~L~kye~~V~~~l~~L~~~l~~isn 52 (411)
T 3ghg_C 25 IADFLSTYQTKVDKDLQSLEDILHQVEN 52 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccchhhHHHHHHHHHHHHHh
Confidence 3445555555666666666666666554
No 207
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=28.65 E-value=3.1e+02 Score=24.34 Aligned_cols=23 Identities=4% Similarity=0.062 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Q 013864 280 EERDAISSKIEVSQAHLELLKRT 302 (435)
Q Consensus 280 ee~~sl~~q~~~~~~qLdkLrkt 302 (435)
.++.....+......+++.+.+.
T Consensus 84 ~ek~~r~e~k~~l~~ql~qv~~L 106 (150)
T 4dci_A 84 GKRSELEEQKRNLLQQQAQVREL 106 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Confidence 34444444455555555555544
No 208
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=28.06 E-value=2.7e+02 Score=23.44 Aligned_cols=19 Identities=11% Similarity=0.186 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 013864 229 LEAAIEETEKQNAEVNAEL 247 (435)
Q Consensus 229 L~~eL~~lE~e~~~l~~el 247 (435)
|.=+++-|....++++..+
T Consensus 28 l~YqVdlLKD~LEe~eE~~ 46 (103)
T 4h22_A 28 FMYQVDTLKDMLLELEEQL 46 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 209
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=27.93 E-value=2.3e+02 Score=22.67 Aligned_cols=36 Identities=14% Similarity=0.237 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 222 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 257 (435)
Q Consensus 222 Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L 257 (435)
|.--...|.+.+++|-.|++.+..|+.+++.-..++
T Consensus 28 Lnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~ 63 (77)
T 2w83_C 28 LNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKL 63 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 334445666677777777776666666665443333
No 210
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=27.89 E-value=1.2e+02 Score=21.67 Aligned_cols=25 Identities=12% Similarity=0.308 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 213 ADFLKEKLKIEEEERKLEAAIEETE 237 (435)
Q Consensus 213 e~l~~e~~~Le~EE~~L~~eL~~lE 237 (435)
++|...+.++-.|..+-+++|.++.
T Consensus 5 ~~l~qkI~kVdrEI~Kte~kI~~lq 29 (42)
T 2l5g_B 5 EELIQNMDRVDREITMVEQQISKLK 29 (42)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444443333333333333
No 211
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=27.67 E-value=78 Score=32.19 Aligned_cols=28 Identities=21% Similarity=0.367 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013864 175 RVLSDKLDKEVDDVTRDIEAYEACLQRLE 203 (435)
Q Consensus 175 d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~ 203 (435)
+.+++ |+.+...+..+.+.-++--+.+.
T Consensus 30 ~~~~~-~~~~~r~~~~~~~~l~~~~n~~s 57 (425)
T 2dq3_A 30 DKVLE-LDKRRREIIKRLEALRSERNKLS 57 (425)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34433 55555555555555544444443
No 212
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=27.41 E-value=58 Score=24.35 Aligned_cols=19 Identities=11% Similarity=0.216 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 013864 222 IEEEERKLEAAIEETEKQN 240 (435)
Q Consensus 222 Le~EE~~L~~eL~~lE~e~ 240 (435)
|+.+-..|..++..|..+.
T Consensus 34 L~~~n~~L~~~v~~L~~e~ 52 (62)
T 1jnm_A 34 LKAQNSELASTANMLREQV 52 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333444444333333
No 213
>1zhc_A Hypothetical protein HP1242; A-helical protein, unknown function; NMR {Helicobacter pylori}
Probab=27.37 E-value=1.4e+02 Score=23.28 Aligned_cols=40 Identities=28% Similarity=0.370 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 220 LKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKEL 260 (435)
Q Consensus 220 ~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~~e 260 (435)
.+|..+-..|..+|..+|..-.-.. ++..|+.+...|+++
T Consensus 20 ~~L~~eH~~LD~~I~~le~~~~~~~-~l~~LKk~KL~LKDe 59 (76)
T 1zhc_A 20 DKIFEKHNQLDDDIKTAEQQNASDA-EVSHMKKQKLKLKDE 59 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSCHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCChH-HHHHHHHHHHHhHHH
Confidence 3445555555555555554433233 555555544444443
No 214
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=27.35 E-value=1.1e+02 Score=25.62 Aligned_cols=21 Identities=10% Similarity=-0.021 Sum_probs=9.6
Q ss_pred HhhcccCCCceeeeecCCeee
Q 013864 299 LKRTNVLNDAFPIWHDGEFGT 319 (435)
Q Consensus 299 LrktNV~Nd~F~I~hdG~fGT 319 (435)
|++...|.+---|--..|-||
T Consensus 56 i~~i~~f~~qtviaIkAP~gT 76 (106)
T 2aze_B 56 LRSIADPAEQMVMVIKAPPET 76 (106)
T ss_dssp HHTTSCTTTEEEEEEECCTTC
T ss_pred HhcCcCCCcCeEEEEECCCCC
Confidence 344444554444444444444
No 215
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=27.13 E-value=40 Score=26.65 Aligned_cols=35 Identities=26% Similarity=0.356 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 227 RKLEAAIEETEKQNAEVNAELKELELKSKRFKELE 261 (435)
Q Consensus 227 ~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~~eE 261 (435)
.-+..=|.+-|...+.+..+++-|+.|+.+++.-+
T Consensus 32 ~Hl~~LL~EsEatnarL~eq~~lLK~EIRRlERnq 66 (71)
T 3bbp_D 32 DHLNGLLRETEATNAILMEQIKLLKSEIRRLERNQ 66 (71)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhhH
Confidence 33444556666777777777777777777776433
No 216
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=26.95 E-value=1e+02 Score=20.52 Aligned_cols=9 Identities=22% Similarity=0.457 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 013864 235 ETEKQNAEV 243 (435)
Q Consensus 235 ~lE~e~~~l 243 (435)
+.|.+.-++
T Consensus 12 qaeaenyql 20 (33)
T 1fmh_A 12 QAEAENYQL 20 (33)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhHH
Confidence 333333333
No 217
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=26.87 E-value=32 Score=22.18 Aligned_cols=18 Identities=22% Similarity=0.309 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 013864 237 EKQNAEVNAELKELELKS 254 (435)
Q Consensus 237 E~e~~~l~~el~~le~e~ 254 (435)
|=|...+++.|..|+.++
T Consensus 6 efendaleqkiaalkqki 23 (28)
T 3ra3_A 6 EFENDALEQKIAALKQKI 23 (28)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHH
Confidence 333334444444444333
No 218
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=26.77 E-value=3.7e+02 Score=24.58 Aligned_cols=23 Identities=13% Similarity=0.261 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 013864 246 ELKELELKSKRFKELEERYWQEF 268 (435)
Q Consensus 246 el~~le~e~~~L~~eE~~~w~e~ 268 (435)
....++..+..+..++.+|-..|
T Consensus 91 ~r~~l~~~l~~~~~L~~~~~~k~ 113 (192)
T 2p22_C 91 QKDKVQALLENARILESKYVASW 113 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555666666553333
No 219
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=26.66 E-value=5e+02 Score=26.01 Aligned_cols=61 Identities=21% Similarity=0.324 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 013864 218 EKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAI 285 (435)
Q Consensus 218 e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~~eE~~~w~e~n~~q~qL~~~~ee~~sl 285 (435)
|+..|..--+.|...|+++.....+++++|+...+....+ | ++.|.++-++.++...+|..
T Consensus 199 e~~~~~~n~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~---~----~~~~~lkp~l~ql~k~rd~~ 259 (373)
T 3hhm_B 199 EIQRIMHNYDKLKSRISEIIDSRRRLEEDLKKQAAEYREI---D----KRMNSIKPDLIQLRKTRDQY 259 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H----HHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H----HHhhccChHHHHHHHHHHHH
Confidence 3444555555666666666666666666555444333222 2 46677777777766666543
No 220
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=26.49 E-value=1.8e+02 Score=29.01 Aligned_cols=13 Identities=8% Similarity=-0.079 Sum_probs=9.1
Q ss_pred ccCCCceeeeecC
Q 013864 303 NVLNDAFPIWHDG 315 (435)
Q Consensus 303 NV~Nd~F~I~hdG 315 (435)
-++..++.|.+.+
T Consensus 311 ~~lAgal~~~~~~ 323 (426)
T 1lrz_A 311 LPISAGFFFINPF 323 (426)
T ss_dssp EEEEEEEEEECSS
T ss_pred ceeEEEEEEEECC
Confidence 4677778777654
No 221
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=26.31 E-value=57 Score=26.84 Aligned_cols=26 Identities=23% Similarity=0.408 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 232 AIEETEKQNAEVNAELKELELKSKRF 257 (435)
Q Consensus 232 eL~~lE~e~~~l~~el~~le~e~~~L 257 (435)
.|.+++...++.+.-|..++.|...+
T Consensus 39 ~i~~ie~~l~EA~ell~qMelE~r~~ 64 (102)
T 1vcs_A 39 MVANVEKQLEEARELLEQMDLEVREI 64 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 35555555555555555555554444
No 222
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=25.90 E-value=1.3e+02 Score=24.51 Aligned_cols=41 Identities=22% Similarity=0.497 Sum_probs=0.0
Q ss_pred HHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 013864 263 RYWQEFNNFQFQ-LIAHQEERDAISSKIEVSQAHLELLKRTN 303 (435)
Q Consensus 263 ~~w~e~n~~q~q-L~~~~ee~~sl~~q~~~~~~qLdkLrktN 303 (435)
+||+....-.+. |.+..+|...|...++.-...+.+|+.-|
T Consensus 20 ~YWk~lAE~Rr~AL~eaL~EN~~Lh~~ie~~~eEi~~Lk~en 61 (83)
T 1wlq_A 20 QYWKEVAEQRRKALYEALKENEKLHKEIEQKDSEIARLRKEN 61 (83)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 223
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=25.81 E-value=5.5e+02 Score=26.28 Aligned_cols=28 Identities=14% Similarity=0.121 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHh
Q 013864 176 VLSDKLDKEVDDV---TRDIEAYEACLQRLE 203 (435)
Q Consensus 176 ~Lle~Ld~qle~~---~~E~d~Y~~fL~~L~ 203 (435)
.=|+.|+..|+++ ..+...|...|+..-
T Consensus 38 ~~l~~L~~~l~~isn~Ts~~~~~v~~ik~~~ 68 (411)
T 3ghg_C 38 KDLQSLEDILHQVENKTSEVKQLIKAIQLTY 68 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHHHHhh
Confidence 3356666666554 557777877776553
No 224
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=25.80 E-value=6e+02 Score=26.67 Aligned_cols=19 Identities=21% Similarity=0.219 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHhhcccCCC
Q 013864 289 IEVSQAHLELLKRTNVLND 307 (435)
Q Consensus 289 ~~~~~~qLdkLrktNV~Nd 307 (435)
|+..|.||+.+..+|+++.
T Consensus 179 Ye~~QKqLeQv~a~dL~p~ 197 (491)
T 1m1j_A 179 YDNIQKHLTQASSIDMHPD 197 (491)
T ss_dssp THHHHHHHHHHTTCCCCCS
T ss_pred HHHHHHHHHHhhccccCCc
Confidence 5556889999999999884
No 225
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=25.72 E-value=3.5e+02 Score=23.92 Aligned_cols=25 Identities=20% Similarity=0.335 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 214 DFLKEKLKIEEEERKLEAAIEETEK 238 (435)
Q Consensus 214 ~l~~e~~~Le~EE~~L~~eL~~lE~ 238 (435)
+|..+..+|+.+|.++..+|+.+-+
T Consensus 25 ~Ldr~~~kle~~ekk~~~~Ikka~k 49 (179)
T 2gd5_A 25 VVDRQIRDIQREEEKVKRSVKDAAK 49 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666677777777777765543
No 226
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=25.63 E-value=1.2e+02 Score=23.08 Aligned_cols=29 Identities=17% Similarity=0.150 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 229 LEAAIEETEKQNAEVNAELKELELKSKRF 257 (435)
Q Consensus 229 L~~eL~~lE~e~~~l~~el~~le~e~~~L 257 (435)
..+.+.+||.+.+.|..+-..|..++..|
T Consensus 28 K~~~~~~Le~~v~~L~~eN~~L~~ev~~L 56 (63)
T 2dgc_A 28 KLQRMKQLEDKVEELLSKNYHLENEVARL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566665555555555555554444
No 227
>3tq7_B Microtubule-associated protein RP/EB family membe; CAP-Gly domain, protein-protein interaction, microtubule BIN cytoskeleton, protein binding; 2.30A {Homo sapiens} SCOP: a.245.1.1
Probab=25.40 E-value=82 Score=25.48 Aligned_cols=27 Identities=22% Similarity=0.289 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013864 177 LSDKLDKEVDDVTRDIEAYEACLQRLE 203 (435)
Q Consensus 177 Lle~Ld~qle~~~~E~d~Y~~fL~~L~ 203 (435)
-+..|+..++.+++||+-|-.-|+.++
T Consensus 9 ei~eLk~~ve~lEkERDFYF~KLRdIE 35 (82)
T 3tq7_B 9 QLVDLKLTVDGLEKERDFYFSKLRDIE 35 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356789999999999999999998876
No 228
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=25.37 E-value=1.6e+02 Score=24.08 Aligned_cols=24 Identities=8% Similarity=0.195 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 230 EAAIEETEKQNAEVNAELKELELK 253 (435)
Q Consensus 230 ~~eL~~lE~e~~~l~~el~~le~e 253 (435)
..++..+......+++++..++.+
T Consensus 36 ~~e~~~~q~~i~~lE~eL~~~r~e 59 (95)
T 3mov_A 36 AKEKDNSRRMLTDKEREMAEIRDQ 59 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444443
No 229
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=25.17 E-value=1.4e+02 Score=23.78 Aligned_cols=30 Identities=13% Similarity=0.318 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 215 FLKEKLKIEEEERKLEAAIEETEKQNAEVN 244 (435)
Q Consensus 215 l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~ 244 (435)
+......|+.|-..|..++..|++|...+.
T Consensus 41 ~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr 70 (78)
T 1gu4_A 41 TQHKVLELTAENERLQKKVEQLSRELSTLR 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444556666666666666665555443
No 230
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=25.08 E-value=3.3e+02 Score=23.39 Aligned_cols=10 Identities=20% Similarity=0.484 Sum_probs=6.1
Q ss_pred HHHHHhhccc
Q 013864 295 HLELLKRTNV 304 (435)
Q Consensus 295 qLdkLrktNV 304 (435)
.+.+||--|+
T Consensus 103 ~ik~lr~gn~ 112 (119)
T 3etw_A 103 KIQALRAGNL 112 (119)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHcCCc
Confidence 4666666665
No 231
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=24.81 E-value=2.1e+02 Score=21.07 Aligned_cols=31 Identities=26% Similarity=0.356 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 228 KLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (435)
Q Consensus 228 ~L~~eL~~lE~e~~~l~~el~~le~e~~~L~ 258 (435)
.|..++..|....++|.+.+++...++..|.
T Consensus 13 ~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lk 43 (51)
T 3m91_A 13 QLEARIDSLAARNSKLMETLKEARQQLLALR 43 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555444444443
No 232
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=24.81 E-value=71 Score=26.07 Aligned_cols=23 Identities=13% Similarity=0.316 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 013864 215 FLKEKLKIEEEERKLEAAIEETE 237 (435)
Q Consensus 215 l~~e~~~Le~EE~~L~~eL~~lE 237 (435)
+..++..|+.+...|.++|.+++
T Consensus 6 L~~~i~~L~~q~~~L~~ei~~~~ 28 (85)
T 3viq_B 6 LESRVHLLEQQKEQLESSLQDAL 28 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443
No 233
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=24.41 E-value=2.1e+02 Score=21.03 Aligned_cols=31 Identities=16% Similarity=0.224 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 218 EKLKIEEEERKLEAAIEETEKQNAEVNAELK 248 (435)
Q Consensus 218 e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~ 248 (435)
++..|.+.-.+|.+.|.+.-.+...+.+++.
T Consensus 17 ~l~~L~~rN~rL~~~L~~AR~el~~Lkeele 47 (51)
T 3m91_A 17 RIDSLAARNSKLMETLKEARQQLLALREEVD 47 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444433
No 234
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=24.15 E-value=4.2e+02 Score=24.29 Aligned_cols=20 Identities=10% Similarity=0.215 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 013864 178 SDKLDKEVDDVTRDIEAYEA 197 (435)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~ 197 (435)
.+.|+++-++...|+..|.+
T Consensus 28 ~e~L~~E~e~k~eEKkkiLa 47 (180)
T 1j1e_C 28 KQELEREAEERRGEKGRALS 47 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45566666776677766654
No 235
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=24.00 E-value=11 Score=36.00 Aligned_cols=62 Identities=13% Similarity=0.178 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 013864 213 ADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQ 274 (435)
Q Consensus 213 e~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~~eE~~~w~e~n~~q~q 274 (435)
+++.++.+.+.++.+.+.+++++++++.+++.+++.+.+.+.....+...+..+.....+++
T Consensus 144 ~e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e~~e~~te~~p~~k~~~qly~~vt~i~w~ 205 (250)
T 2ve7_C 144 MEFLWQYKSSADKMQQLNAAHQEALMKLERLEKEVDEDTTVTIPSAVYVAQLYHQVSKIEWE 205 (250)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHSCC-------------CTTTHHHHHHHHHHHCCEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhceee
No 236
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=23.86 E-value=2.9e+02 Score=22.34 Aligned_cols=7 Identities=0% Similarity=0.102 Sum_probs=0.4
Q ss_pred HHHHHHH
Q 013864 189 TRDIEAY 195 (435)
Q Consensus 189 ~~E~d~Y 195 (435)
++++..|
T Consensus 8 Ekd~~~~ 14 (81)
T 3qh9_A 8 EKEQREQ 14 (81)
T ss_dssp ------C
T ss_pred hhhhhhh
Confidence 3333333
No 237
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=23.80 E-value=1e+02 Score=27.52 Aligned_cols=23 Identities=9% Similarity=0.270 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 013864 233 IEETEKQNAEVNAELKELELKSK 255 (435)
Q Consensus 233 L~~lE~e~~~l~~el~~le~e~~ 255 (435)
+..++.+.+.+.+++.+|+.+..
T Consensus 82 kk~~ea~la~l~~~~~~LeAE~a 104 (146)
T 2xnx_M 82 LGNAKLELDQLSSEKEQLTIEKA 104 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHhhHHHHHHHHH
Confidence 33334444444444444444333
No 238
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=23.52 E-value=5.9e+02 Score=25.80 Aligned_cols=8 Identities=0% Similarity=0.011 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 013864 173 CMRVLSDK 180 (435)
Q Consensus 173 C~d~Lle~ 180 (435)
|-+.++..
T Consensus 82 aw~~~~~e 89 (486)
T 3haj_A 82 AWMAFMSE 89 (486)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33444333
No 239
>4etp_B Spindle POLE BODY-associated protein VIK1; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=23.34 E-value=2.1e+02 Score=28.67 Aligned_cols=54 Identities=22% Similarity=0.309 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 233 IEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQ 293 (435)
Q Consensus 233 L~~lE~e~~~l~~el~~le~e~~~L~~eE~~~w~e~n~~q~qL~~~~ee~~sl~~q~~~~~ 293 (435)
+.++++|.+.++.++++++.+ ....|..|=..|+.++.+++ .|+-|++-++-..
T Consensus 5 ~~~~~~e~~~~~~~~~~vq~k---A~~~E~~Yn~~~dKmeqE~l----rRRkLENSIdElK 58 (333)
T 4etp_B 5 IAALEKEIAALEKEIAALEKE---ISKQEKFYNDTYNTVCKELL----RSRRLENSIIEQK 58 (333)
T ss_dssp -CHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH----HHHHHhhhHHHhc
Confidence 334444444454555555543 23445556666666665533 3445555544433
No 240
>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}
Probab=23.26 E-value=4.6e+02 Score=24.43 Aligned_cols=40 Identities=20% Similarity=0.313 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 212 EADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELE 251 (435)
Q Consensus 212 ee~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le 251 (435)
.+.+.+....|..+.+.|..++..++++...+..+|+..-
T Consensus 9 ~e~~r~~~r~Lr~~~R~LdR~~~kle~eEkk~~~~IKkaa 48 (218)
T 3frt_A 9 KELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAA 48 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666777777777777777777777777777653
No 241
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=23.24 E-value=12 Score=29.23 Aligned_cols=21 Identities=19% Similarity=0.529 Sum_probs=15.3
Q ss_pred CCCccccCCCCccccccccCcc
Q 013864 9 KGRTLSVDPNVPRWVCQNCRHF 30 (435)
Q Consensus 9 ~~~~~~~~~~~~~~~cq~c~~~ 30 (435)
+|.+..| +++|.|.|+.|--.
T Consensus 25 ~G~~~~I-~~Vp~~~C~~CGE~ 45 (78)
T 3ga8_A 25 RGRKTVL-KGIHGLYCVHCEES 45 (78)
T ss_dssp TTEEEEE-EEEEEEEETTTCCE
T ss_pred CCEEEEE-cCceeEECCCCCCE
Confidence 4566555 68899999988754
No 242
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=23.09 E-value=1.7e+02 Score=26.82 Aligned_cols=28 Identities=7% Similarity=0.114 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013864 274 QLIAHQEERDAISSKIEVSQAHLELLKR 301 (435)
Q Consensus 274 qL~~~~ee~~sl~~q~~~~~~qLdkLrk 301 (435)
++.+.+.+....+++++.++.+|+.++.
T Consensus 99 ~~~~a~~~~~~a~a~l~~a~a~l~~a~~ 126 (277)
T 2f1m_A 99 EYDQALADAQQANAAVTAAKAAVETARI 126 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566777888888888888876654
No 243
>3ajw_A Flagellar FLIJ protein; flagellum, type III secretion, coiled-coil, protein transpor; 2.10A {Salmonella typhimurium}
Probab=22.86 E-value=3.3e+02 Score=22.58 Aligned_cols=31 Identities=19% Similarity=0.148 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 223 EEEERKLEAAIEETEKQNAEVNAELKELELK 253 (435)
Q Consensus 223 e~EE~~L~~eL~~lE~e~~~l~~el~~le~e 253 (435)
+.+++....+|.....+......+|..|...
T Consensus 18 ~~~ed~a~~~l~~a~~~~~~~~~~L~~L~~~ 48 (150)
T 3ajw_A 18 EKEVDDAARLLGEMRRGCQQAEEQLKMLIDY 48 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555555555555555443
No 244
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=22.76 E-value=47 Score=33.01 Aligned_cols=14 Identities=14% Similarity=0.513 Sum_probs=11.4
Q ss_pred CCChhHHHHHHHHH
Q 013864 332 PVEWDEINAAWGQA 345 (435)
Q Consensus 332 ~V~W~EINAAwGQ~ 345 (435)
-=.|.|-=.+.|..
T Consensus 118 ~R~W~~Yk~GFG~~ 131 (319)
T 1fzc_C 118 KKNWIQYKEGFGHL 131 (319)
T ss_dssp CCCHHHHHHCEEEE
T ss_pred ecCHHHHhHhhCCc
Confidence 34799999999886
No 245
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=22.60 E-value=1.7e+02 Score=20.04 Aligned_cols=22 Identities=18% Similarity=0.120 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 013864 236 TEKQNAEVNAELKELELKSKRF 257 (435)
Q Consensus 236 lE~e~~~l~~el~~le~e~~~L 257 (435)
||...+++..+...++.|..+|
T Consensus 6 ledKvEel~~~~~~l~nEv~Rl 27 (34)
T 2r2v_A 6 VADKLEEVASKLYHNANELARV 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHH
Confidence 3333333333333333333333
No 246
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=22.33 E-value=2.9e+02 Score=21.74 Aligned_cols=60 Identities=13% Similarity=0.190 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 232 AIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQA 294 (435)
Q Consensus 232 eL~~lE~e~~~l~~el~~le~e~~~L~~eE~~~w~e~n~~q~qL~~~~ee~~sl~~q~~~~~~ 294 (435)
+|+.+...++.++..+.+++.. ....-..+-...+.++-++.....+.......|+...+
T Consensus 2 el~~l~~~~~sLE~~l~e~e~~---~~~~~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~Lln 61 (84)
T 1gk4_A 2 EVDALKGTNESLERQMREMEEN---FAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLN 61 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 247
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=22.11 E-value=91 Score=24.36 Aligned_cols=26 Identities=8% Similarity=0.079 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 228 KLEAAIEETEKQNAEVNAELKELELK 253 (435)
Q Consensus 228 ~L~~eL~~lE~e~~~l~~el~~le~e 253 (435)
.|..++..++.+.+++..+...|+.+
T Consensus 51 ~L~~~~~~l~~e~~~L~~~~~~L~~~ 76 (83)
T 1nkp_B 51 YMRRKNHTHQQDIDDLKRQNALLEQQ 76 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444433
No 248
>1zhc_A Hypothetical protein HP1242; A-helical protein, unknown function; NMR {Helicobacter pylori}
Probab=21.82 E-value=1.1e+02 Score=23.90 Aligned_cols=20 Identities=10% Similarity=0.328 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 013864 232 AIEETEKQNAEVNAELKELE 251 (435)
Q Consensus 232 eL~~lE~e~~~l~~el~~le 251 (435)
.+..|..+...++.+|..++
T Consensus 18 ~f~~L~~eH~~LD~~I~~le 37 (76)
T 1zhc_A 18 HFDKIFEKHNQLDDDIKTAE 37 (76)
T ss_dssp THHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34455555555555555554
No 249
>1i6z_A BAG-family molecular chaperone regulator-1; triple helix bundle; NMR {Mus musculus} SCOP: a.7.7.1
Probab=21.74 E-value=4.1e+02 Score=23.32 Aligned_cols=14 Identities=29% Similarity=0.202 Sum_probs=10.8
Q ss_pred HHHHHHHHHhhccc
Q 013864 291 VSQAHLELLKRTNV 304 (435)
Q Consensus 291 ~~~~qLdkLrktNV 304 (435)
....++++|+.||.
T Consensus 118 ~~~~~~~~~q~~~~ 131 (135)
T 1i6z_A 118 YICQETERLQSTNL 131 (135)
T ss_dssp HHHHHHHHHCCCCC
T ss_pred HHHHHHHHHhhhhh
Confidence 34567889999996
No 250
>3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa}
Probab=21.51 E-value=3.5e+02 Score=25.36 Aligned_cols=28 Identities=14% Similarity=0.027 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013864 176 VLSDKLDKEVDDVTRDIEAYEACLQRLEG 204 (435)
Q Consensus 176 ~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~ 204 (435)
.+++.+.+-+..+.++ ..|.+.|+.+..
T Consensus 216 ~l~~~l~~al~~~~~d-~~~~~~l~~~g~ 243 (310)
T 3n5l_A 216 EQKNKLRDFFFKYGAN-AEQKKVLADLQW 243 (310)
T ss_dssp HHHHHHHHHHHHCCCS-HHHHHHHHHTTE
T ss_pred HHHHHHHHHHHhcCCC-hhHHHHHHhcCc
Confidence 4555666665555433 356777777653
No 251
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=21.33 E-value=2.4e+02 Score=22.87 Aligned_cols=54 Identities=20% Similarity=0.304 Sum_probs=0.0
Q ss_pred HHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 196 EACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELE 251 (435)
Q Consensus 196 ~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le 251 (435)
..|.+.|..+.+.++ .+..+|-.+|.++...|..++..+.++..++..-...++
T Consensus 27 e~YWk~lAE~RR~AL--~eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL~elae~~q 80 (83)
T 1uii_A 27 SQYWKEVAEKRRKAL--YEALKENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQ 80 (83)
T ss_dssp HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 252
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=21.21 E-value=1.6e+02 Score=25.59 Aligned_cols=23 Identities=13% Similarity=0.280 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 013864 279 QEERDAISSKIEVSQAHLELLKR 301 (435)
Q Consensus 279 ~ee~~sl~~q~~~~~~qLdkLrk 301 (435)
++.++.+.+++.-+..++..+..
T Consensus 67 ~~ki~eL~~kvA~le~e~~~~e~ 89 (125)
T 2pms_C 67 SDKIDELDAEIAKLEDQLKAAEE 89 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HhHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444444444443
No 253
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=21.18 E-value=3.1e+02 Score=29.81 Aligned_cols=12 Identities=25% Similarity=0.551 Sum_probs=5.1
Q ss_pred cCCcchHHHHHH
Q 013864 165 VEQPLCLECMRV 176 (435)
Q Consensus 165 IDhPLC~eC~d~ 176 (435)
|+.|-=.+....
T Consensus 329 l~~p~~~e~~~i 340 (854)
T 1qvr_A 329 VDEPTVEETISI 340 (854)
T ss_dssp ECCCCHHHHHHH
T ss_pred eCCCCHHHHHHH
Confidence 444543333333
No 254
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=21.08 E-value=5.3e+02 Score=26.90 Aligned_cols=36 Identities=11% Similarity=0.285 Sum_probs=22.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 013864 169 LCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGE 205 (435)
Q Consensus 169 LC~eC~d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~ 205 (435)
+|--=|. |-+-|-++-..+.++.+.-+.-|+.|+..
T Consensus 75 yCPTtCg-lad~L~kye~~V~~dl~~Le~~l~~isn~ 110 (461)
T 3ghg_B 75 LCPTGCQ-LQEALLQQERPIRNSVDELNNNVEAVSQT 110 (461)
T ss_dssp CEECHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcch-HHHHHHhcccchhhHHHHHHHHHHHHHhh
Confidence 4543332 45556666666777777777777777644
No 255
>3dyt_A Sorting nexin-9; 3-helix bundle, BAR domain, PX domain, phosphoprotein, protein transport, SH3 domain, transport, transport protein; 2.08A {Homo sapiens} PDB: 3dyu_A 2raj_A 2rai_A 2rak_A*
Probab=20.98 E-value=5.9e+02 Score=24.86 Aligned_cols=17 Identities=12% Similarity=0.321 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHhh
Q 013864 285 ISSKIEVSQAHLELLKR 301 (435)
Q Consensus 285 l~~q~~~~~~qLdkLrk 301 (435)
++.|+.+.+..++.|+.
T Consensus 342 l~~qi~~~k~~~~~w~~ 358 (366)
T 3dyt_A 342 LEQQVQFYETIAEKLRQ 358 (366)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45677788877777764
No 256
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=20.56 E-value=4.6e+02 Score=23.40 Aligned_cols=23 Identities=13% Similarity=0.115 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 013864 270 NFQFQLIAHQEERDAISSKIEVS 292 (435)
Q Consensus 270 ~~q~qL~~~~ee~~sl~~q~~~~ 292 (435)
.++.++.+.+.-++++..|+...
T Consensus 119 ~L~~ql~e~~~~l~~lq~ql~~L 141 (154)
T 2ocy_A 119 RLTEQLREKDTLLDTLTLQLKNL 141 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444433
No 257
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=20.54 E-value=2.9e+02 Score=25.95 Aligned_cols=61 Identities=20% Similarity=0.298 Sum_probs=0.0
Q ss_pred HHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 198 CLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKEL 260 (435)
Q Consensus 198 fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~~e 260 (435)
|.+.|..+.+.++ .+..+|-.+|.++...|..+|..|..+..++..-...++-=..-++++
T Consensus 98 YWk~lAE~RR~AL--~eaLeEN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q~la~vi~~l 158 (209)
T 2wvr_A 98 YWKEVAEKRRKAL--YEALKENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQYMAELIERL 158 (209)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 258
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=20.52 E-value=79 Score=23.45 Aligned_cols=28 Identities=18% Similarity=0.315 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 227 RKLEAAIEETEKQNAEVNAELKELELKS 254 (435)
Q Consensus 227 ~~L~~eL~~lE~e~~~l~~el~~le~e~ 254 (435)
.++..+++.+.++..++.+++..++.++
T Consensus 30 d~v~~~~~~l~~e~~~L~~~~~~l~~~l 57 (57)
T 2wuj_A 30 AQVRKDYEIVLRKKTELEAKVNELDERI 57 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 259
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=20.51 E-value=3.3e+02 Score=21.76 Aligned_cols=36 Identities=8% Similarity=0.260 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 227 RKLEAAIEETEKQNAEVNAELKELELKSKRFKELEE 262 (435)
Q Consensus 227 ~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~~eE~ 262 (435)
-.|...|+++..|.++|.-+++.+.-++..+.+.-+
T Consensus 23 ~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQr 58 (83)
T 2xdj_A 23 TQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQK 58 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 345555666666666666666665555555544443
Done!