Query 013864
Match_columns 435
No_of_seqs 149 out of 240
Neff 4.7
Searched_HMMs 13730
Date Mon Mar 25 18:32:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013864.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/013864hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2efka1 a.238.1.4 (A:10-288) C 73.5 25 0.0018 29.7 14.9 19 409-427 254-272 (279)
2 d1fxka_ a.2.5.1 (A:) Prefoldin 71.5 19 0.0014 27.6 10.8 29 272-300 71-99 (107)
3 d2efla1 a.238.1.4 (A:1-288) Fo 69.9 30 0.0022 29.2 16.2 13 408-420 262-274 (288)
4 d1fxka_ a.2.5.1 (A:) Prefoldin 69.0 11 0.00079 29.2 8.5 33 221-253 69-101 (107)
5 d1seta1 a.2.7.1 (A:1-110) Sery 67.1 22 0.0016 27.3 10.0 67 217-289 28-94 (110)
6 d1fxkc_ a.2.5.1 (C:) Prefoldin 63.9 19 0.0014 28.3 9.2 27 177-203 16-42 (133)
7 d1seta1 a.2.7.1 (A:1-110) Sery 59.3 34 0.0025 26.1 10.7 23 181-203 33-55 (110)
8 d1qvra2 c.37.1.20 (A:149-535) 53.4 34 0.0025 32.1 10.4 23 164-187 180-202 (387)
9 d2azeb1 e.63.1.2 (B:201-301) T 53.1 11 0.00079 29.6 5.6 32 228-259 5-36 (101)
10 d1qvra2 c.37.1.20 (A:149-535) 52.4 24 0.0017 33.2 9.1 13 24-36 39-51 (387)
11 d1lrza1 a.2.7.4 (A:245-309) Me 47.9 36 0.0026 24.5 7.4 10 283-292 47-56 (65)
12 d2efla1 a.238.1.4 (A:1-288) Fo 46.7 77 0.0056 26.4 14.2 18 185-202 106-123 (288)
13 d2efka1 a.238.1.4 (A:10-288) C 40.1 96 0.007 25.7 15.0 26 178-203 90-115 (279)
14 d1ivsa1 a.2.7.3 (A:797-862) Va 37.6 37 0.0027 23.8 6.0 13 227-239 7-19 (66)
15 d1nkpa_ a.38.1.1 (A:) Myc prot 36.8 29 0.0021 25.6 5.5 31 219-249 54-84 (88)
16 d1wu9a1 a.245.1.1 (A:191-249) 35.8 22 0.0016 25.4 4.4 26 178-203 10-35 (59)
17 d2azeb1 e.63.1.2 (B:201-301) T 34.0 34 0.0025 26.6 5.7 17 243-259 6-22 (101)
18 d1fxkc_ a.2.5.1 (C:) Prefoldin 30.4 1.1E+02 0.008 23.4 13.9 30 270-299 99-128 (133)
19 d2ap3a1 a.24.27.1 (A:12-196) H 29.8 99 0.0072 22.8 16.1 13 231-243 116-128 (185)
20 d1ez3a_ a.47.2.1 (A:) Syntaxin 28.8 1.1E+02 0.0082 23.2 8.2 28 213-240 6-33 (124)
21 d1ykhb1 a.252.1.1 (B:2-130) RN 27.6 1.4E+02 0.01 23.7 9.8 31 211-241 85-115 (129)
22 d1ivsa1 a.2.7.3 (A:797-862) Va 27.6 90 0.0066 21.6 7.5 22 182-203 3-24 (66)
23 d1nkpb_ a.38.1.1 (B:) Max prot 25.9 35 0.0025 24.8 4.2 30 220-249 50-79 (83)
24 d1vf7a_ f.46.1.1 (A:) Multidru 24.2 94 0.0069 25.2 7.3 25 274-298 85-109 (237)
25 d2cupa3 g.39.1.3 (A:8-34) Four 23.4 13 0.00093 22.6 0.9 14 24-40 1-14 (27)
26 d1gqea_ e.38.1.1 (A:) Polypept 22.7 2.7E+02 0.02 25.4 13.9 21 289-309 100-120 (362)
27 d1nkpa_ a.38.1.1 (A:) Myc prot 22.3 1.2E+02 0.0084 22.0 6.7 28 226-253 54-81 (88)
28 d2inca1 a.25.1.2 (A:2-492) Tol 21.8 16 0.0011 36.0 1.8 21 13-34 386-406 (491)
29 d1bjta_ e.11.1.1 (A:) DNA topo 20.8 77 0.0056 32.3 7.1 11 13-23 355-365 (760)
No 1
>d2efka1 a.238.1.4 (A:10-288) CDC42-interacting protein 4, CIP4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=73.52 E-value=25 Score=29.71 Aligned_cols=19 Identities=16% Similarity=0.097 Sum_probs=8.4
Q ss_pred HHHHHHHhhcCcCCCCCCC
Q 013864 409 KDFAEFANSKDQENNIPPD 427 (435)
Q Consensus 409 ~Q~~e~v~~~d~~~~~p~~ 427 (435)
.++..|+...-.....|++
T Consensus 254 ~D~~~f~~~~~t~~~~p~~ 272 (279)
T d2efka1 254 NDSHVLIELHKSGFARPGD 272 (279)
T ss_dssp HHHHHHHHHTGGGCCCCCC
T ss_pred HHHHHHHHHcCCCCCCCCC
Confidence 4555565543333333433
No 2
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=71.47 E-value=19 Score=27.62 Aligned_cols=29 Identities=21% Similarity=0.139 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013864 272 QFQLIAHQEERDAISSKIEVSQAHLELLK 300 (435)
Q Consensus 272 q~qL~~~~ee~~sl~~q~~~~~~qLdkLr 300 (435)
...+..+..+...+..++.....+++.++
T Consensus 71 ~~~~e~l~~~i~~l~~q~~~l~~~l~~~~ 99 (107)
T d1fxka_ 71 QEKLETLQLREKTIERQEERVMKKLQEMQ 99 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444555555555555555544
No 3
>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=69.93 E-value=30 Score=29.20 Aligned_cols=13 Identities=8% Similarity=-0.061 Sum_probs=6.7
Q ss_pred HHHHHHHHhhcCc
Q 013864 408 LKDFAEFANSKDQ 420 (435)
Q Consensus 408 L~Q~~e~v~~~d~ 420 (435)
-.++..||+..-+
T Consensus 262 ~~D~~~fi~~~~t 274 (288)
T d2efla1 262 KNDSQLVIEAYKS 274 (288)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHHHcCC
Confidence 4455556654433
No 4
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=69.04 E-value=11 Score=29.16 Aligned_cols=33 Identities=21% Similarity=0.389 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 221 KIEEEERKLEAAIEETEKQNAEVNAELKELELK 253 (435)
Q Consensus 221 ~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e 253 (435)
.|.+..+.+..+|+.++++...+..++.+++.+
T Consensus 69 ~l~~~~e~l~~~i~~l~~q~~~l~~~l~~~~~~ 101 (107)
T d1fxka_ 69 ELQEKLETLQLREKTIERQEERVMKKLQEMQVN 101 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555555555544
No 5
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=67.09 E-value=22 Score=27.26 Aligned_cols=67 Identities=10% Similarity=0.138 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 013864 217 KEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKI 289 (435)
Q Consensus 217 ~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~L~~eE~~~w~e~n~~q~qL~~~~ee~~sl~~q~ 289 (435)
.++.+|.++.+++..++++|..++.++..++.....+. . ...-.+...+.-++..++.+...++.++
T Consensus 28 d~i~~ld~~rr~l~~~~e~l~~~rN~~sk~i~k~~~~~--~----~~l~~~~k~lk~~i~~le~~~~~~~~~l 94 (110)
T d1seta1 28 EALLALDREVQELKKRLQEVQTERNQVAKRVPKAPPEE--K----EALIARGKALGEEAKRLEEALREKEARL 94 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCHHH--H----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc--h----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677888888899999999998888888776543221 0 1123344444444444444444444443
No 6
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=63.92 E-value=19 Score=28.25 Aligned_cols=27 Identities=15% Similarity=0.245 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013864 177 LSDKLDKEVDDVTRDIEAYEACLQRLE 203 (435)
Q Consensus 177 Lle~Ld~qle~~~~E~d~Y~~fL~~L~ 203 (435)
-++.|+.+++.++.....|....+.|+
T Consensus 16 ~l~~l~~~i~~l~~~~~e~~~~~~~L~ 42 (133)
T d1fxkc_ 16 QVELIQQQMEAVRATISELEILEKTLS 42 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666666666666765555543
No 7
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=59.28 E-value=34 Score=26.09 Aligned_cols=23 Identities=17% Similarity=0.447 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 013864 181 LDKEVDDVTRDIEAYEACLQRLE 203 (435)
Q Consensus 181 Ld~qle~~~~E~d~Y~~fL~~L~ 203 (435)
|+.+...+..+.+...+--+.+.
T Consensus 33 ld~~rr~l~~~~e~l~~~rN~~s 55 (110)
T d1seta1 33 LDREVQELKKRLQEVQTERNQVA 55 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555544444443
No 8
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}
Probab=53.36 E-value=34 Score=32.08 Aligned_cols=23 Identities=17% Similarity=0.294 Sum_probs=14.7
Q ss_pred ccCCcchHHHHHHHHHHHHHHHHH
Q 013864 164 QVEQPLCLECMRVLSDKLDKEVDD 187 (435)
Q Consensus 164 ~IDhPLC~eC~d~Lle~Ld~qle~ 187 (435)
.|+-|-=.++... +..+...++.
T Consensus 180 ~v~ep~~~~~~~i-l~~~~~~~e~ 202 (387)
T d1qvra2 180 YVDEPTVEETISI-LRGLKEKYEV 202 (387)
T ss_dssp EECCCCHHHHHHH-HHHHHHHHHH
T ss_pred cCCCCcHHHHHHH-HHHHHHHHHh
Confidence 5667766676665 4456666664
No 9
>d2azeb1 e.63.1.2 (B:201-301) Transcription factor E2F1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=53.15 E-value=11 Score=29.59 Aligned_cols=32 Identities=6% Similarity=0.162 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 228 KLEAAIEETEKQNAEVNAELKELELKSKRFKE 259 (435)
Q Consensus 228 ~L~~eL~~lE~e~~~l~~el~~le~e~~~L~~ 259 (435)
.|.+||+.|+.+..+|++.+..++.++..+.+
T Consensus 5 ~L~~El~~L~~~E~~LD~li~~~~~~L~~lte 36 (101)
T d2azeb1 5 GLTQDLRQLQESEQQLDHLMNICTTQLRLLSE 36 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 35556666666666666666665555555543
No 10
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}
Probab=52.42 E-value=24 Score=33.19 Aligned_cols=13 Identities=8% Similarity=0.230 Sum_probs=5.5
Q ss_pred ccccCcceEEeec
Q 013864 24 CQNCRHFLCIVGV 36 (435)
Q Consensus 24 cq~c~~~l~i~~~ 36 (435)
|-.=++...+||-
T Consensus 39 ~r~~k~n~llvG~ 51 (387)
T d1qvra2 39 LRRTKNNPVLIGE 51 (387)
T ss_dssp HCSSCCCCEEEEC
T ss_pred hcCCCCCCeEECC
Confidence 4333343444453
No 11
>d1lrza1 a.2.7.4 (A:245-309) Methicillin resistance protein FemA probable tRNA-binding arm {Staphylococcus aureus [TaxId: 1280]}
Probab=47.90 E-value=36 Score=24.53 Aligned_cols=10 Identities=50% Similarity=0.468 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 013864 283 DAISSKIEVS 292 (435)
Q Consensus 283 ~sl~~q~~~~ 292 (435)
++...++.-|
T Consensus 47 ~s~~~ki~Ea 56 (65)
T d1lrza1 47 DANEQKIEEG 56 (65)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 12
>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=46.75 E-value=77 Score=26.42 Aligned_cols=18 Identities=6% Similarity=0.045 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 013864 185 VDDVTRDIEAYEACLQRL 202 (435)
Q Consensus 185 le~~~~E~d~Y~~fL~~L 202 (435)
..+.++.++.+.....++
T Consensus 106 ~~~~~~~~K~~~~~~~k~ 123 (288)
T d2efla1 106 VQELKQERKSNFHDGRKA 123 (288)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344444444444433
No 13
>d2efka1 a.238.1.4 (A:10-288) CDC42-interacting protein 4, CIP4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=40.06 E-value=96 Score=25.67 Aligned_cols=26 Identities=12% Similarity=0.020 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013864 178 SDKLDKEVDDVTRDIEAYEACLQRLE 203 (435)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~fL~~L~ 203 (435)
++.|..-+.+.++.++.+....+++.
T Consensus 90 ~~~l~~~~~~~~~~~k~~~~~~~~~~ 115 (279)
T d2efka1 90 CLELTKYSQEMKQERKMHFQEGRRAQ 115 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444555555555444
No 14
>d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS) C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=37.65 E-value=37 Score=23.80 Aligned_cols=13 Identities=23% Similarity=0.256 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q 013864 227 RKLEAAIEETEKQ 239 (435)
Q Consensus 227 ~~L~~eL~~lE~e 239 (435)
.+|..+|..++++
T Consensus 7 ~RL~K~l~kl~~~ 19 (66)
T d1ivsa1 7 RRQEKRLKELLAL 19 (66)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 15
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=36.75 E-value=29 Score=25.62 Aligned_cols=31 Identities=23% Similarity=0.367 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 219 KLKIEEEERKLEAAIEETEKQNAEVNAELKE 249 (435)
Q Consensus 219 ~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~ 249 (435)
+..|+.+..+|..+++.+.++.+.+.+++..
T Consensus 54 I~~L~~~~~~l~~~~~~l~~~~~~L~~~l~~ 84 (88)
T d1nkpa_ 54 ILSVQAEEQKLISEEDLLRKRREQLKHKLEQ 84 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555655555555555555554443
No 16
>d1wu9a1 a.245.1.1 (A:191-249) Microtubule-associated protein EB1, C-terminal dimerization domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=35.79 E-value=22 Score=25.37 Aligned_cols=26 Identities=23% Similarity=0.405 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013864 178 SDKLDKEVDDVTRDIEAYEACLQRLE 203 (435)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~fL~~L~ 203 (435)
+..|+..++.+++|||-|-.-|..++
T Consensus 10 i~elk~~v~~lEkERdFYF~KLRdIE 35 (59)
T d1wu9a1 10 VNVLKLTVEDLEKERDFYFGKLRNIE 35 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45688899999999999999888876
No 17
>d2azeb1 e.63.1.2 (B:201-301) Transcription factor E2F1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=33.98 E-value=34 Score=26.56 Aligned_cols=17 Identities=12% Similarity=0.438 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 013864 243 VNAELKELELKSKRFKE 259 (435)
Q Consensus 243 l~~el~~le~e~~~L~~ 259 (435)
|.+|++.|+.+..+|++
T Consensus 6 L~~El~~L~~~E~~LD~ 22 (101)
T d2azeb1 6 LTQDLRQLQESEQQLDH 22 (101)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444444
No 18
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=30.41 E-value=1.1e+02 Score=23.44 Aligned_cols=30 Identities=20% Similarity=0.130 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 270 NFQFQLIAHQEERDAISSKIEVSQAHLELL 299 (435)
Q Consensus 270 ~~q~qL~~~~ee~~sl~~q~~~~~~qLdkL 299 (435)
.++..+..+.++...+..++.....++++|
T Consensus 99 ~l~~~~~~l~~~~~~~~~~i~~l~~~~~~l 128 (133)
T d1fxkc_ 99 ELESTLQKMGENLRAITDIMMKLSPQAEEL 128 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555555555555555554
No 19
>d2ap3a1 a.24.27.1 (A:12-196) Hypothetical protein MW0975 (SA0943) {Staphylococcus aureus [TaxId: 1280]}
Probab=29.82 E-value=99 Score=22.76 Aligned_cols=13 Identities=8% Similarity=-0.005 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q 013864 231 AAIEETEKQNAEV 243 (435)
Q Consensus 231 ~eL~~lE~e~~~l 243 (435)
..+..+......+
T Consensus 116 ~~~~~~~~~~~~~ 128 (185)
T d2ap3a1 116 KLHSDYAKAYKKA 128 (185)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 20
>d1ez3a_ a.47.2.1 (A:) Syntaxin 1A N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=28.83 E-value=1.1e+02 Score=23.17 Aligned_cols=28 Identities=18% Similarity=0.362 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 213 ADFLKEKLKIEEEERKLEAAIEETEKQN 240 (435)
Q Consensus 213 e~l~~e~~~Le~EE~~L~~eL~~lE~e~ 240 (435)
++|..+...++.+...+...+.++....
T Consensus 6 ~~Ff~eV~~Ir~~I~~i~~~v~~i~~~~ 33 (124)
T d1ez3a_ 6 DEFFEQVEEIRGFIDKIAENVEEVKRKH 33 (124)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555556666655555555555444
No 21
>d1ykhb1 a.252.1.1 (B:2-130) RNA polymerase II holoenzyme component SRB7 (MED21) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=27.59 E-value=1.4e+02 Score=23.67 Aligned_cols=31 Identities=16% Similarity=0.145 Sum_probs=14.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 211 SEADFLKEKLKIEEEERKLEAAIEETEKQNA 241 (435)
Q Consensus 211 ~ee~l~~e~~~Le~EE~~L~~eL~~lE~e~~ 241 (435)
++++-.+.+.+|++|-....+++++.-++.+
T Consensus 85 see~Q~~~i~~Le~E~~~~~~el~~~v~e~e 115 (129)
T d1ykhb1 85 SAEEQLRKIDMLQKKLVEVEDEKIEAIKKKE 115 (129)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444344445555555444444444433333
No 22
>d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS) C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=27.58 E-value=90 Score=21.56 Aligned_cols=22 Identities=9% Similarity=0.074 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 013864 182 DKEVDDVTRDIEAYEACLQRLE 203 (435)
Q Consensus 182 d~qle~~~~E~d~Y~~fL~~L~ 203 (435)
+.++..++++.+.+...+.++.
T Consensus 3 ~~E~~RL~K~l~kl~~~i~~~~ 24 (66)
T d1ivsa1 3 EEWRRRQEKRLKELLALAERSQ 24 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443
No 23
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.90 E-value=35 Score=24.83 Aligned_cols=30 Identities=13% Similarity=0.318 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 220 LKIEEEERKLEAAIEETEKQNAEVNAELKE 249 (435)
Q Consensus 220 ~~Le~EE~~L~~eL~~lE~e~~~l~~el~~ 249 (435)
..|..+...|..+++.+.++...+..++..
T Consensus 50 ~~L~~~~~~l~~~~~~l~~~~~~L~~~l~~ 79 (83)
T d1nkpb_ 50 QYMRRKNHTHQQDIDDLKRQNALLEQQVRA 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666665555555443
No 24
>d1vf7a_ f.46.1.1 (A:) Multidrug resistance protein MexA domain {Pseudomonas aeruginosa [TaxId: 287]}
Probab=24.23 E-value=94 Score=25.17 Aligned_cols=25 Identities=12% Similarity=0.097 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 274 QLIAHQEERDAISSKIEVSQAHLEL 298 (435)
Q Consensus 274 qL~~~~ee~~sl~~q~~~~~~qLdk 298 (435)
++...+.+...+..+++.++.+|++
T Consensus 85 ~~~~~~~~~~~a~~~l~~a~~~l~~ 109 (237)
T d1vf7a_ 85 QYADANAAYLQSKAAVEQARINLRY 109 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhhhhhhcchhHHHHHHHhhhhcc
Confidence 3334444455556666666665543
No 25
>d2cupa3 g.39.1.3 (A:8-34) Four and a half LIM domains protein 1, FHL-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.36 E-value=13 Score=22.64 Aligned_cols=14 Identities=43% Similarity=0.909 Sum_probs=10.6
Q ss_pred ccccCcceEEeecCcch
Q 013864 24 CQNCRHFLCIVGVDSYA 40 (435)
Q Consensus 24 cq~c~~~l~i~~~d~~~ 40 (435)
|-.|+.|+ |||+-.
T Consensus 1 c~ecrkpi---gad~ke 14 (27)
T d2cupa3 1 CVECRKPI---GADSKE 14 (27)
T ss_dssp CSSSCCBC---CSSSCE
T ss_pred CccccCCc---CcchHH
Confidence 88999995 668643
No 26
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]}
Probab=22.66 E-value=2.7e+02 Score=25.39 Aligned_cols=21 Identities=10% Similarity=0.319 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHhhcccCCCce
Q 013864 289 IEVSQAHLELLKRTNVLNDAF 309 (435)
Q Consensus 289 ~~~~~~qLdkLrktNV~Nd~F 309 (435)
+......+++|+-.-++++-+
T Consensus 100 l~~l~~~l~~le~~ll~~~~~ 120 (362)
T d1gqea_ 100 LDALEEKLAQLEFRRMFSGEY 120 (362)
T ss_dssp HHHHHHHHHHHGGGGGCCSTT
T ss_pred HHHHhhhhhHHHHhhcccCcc
Confidence 444555577777777776543
No 27
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.31 E-value=1.2e+02 Score=21.99 Aligned_cols=28 Identities=11% Similarity=0.076 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013864 226 ERKLEAAIEETEKQNAEVNAELKELELK 253 (435)
Q Consensus 226 E~~L~~eL~~lE~e~~~l~~el~~le~e 253 (435)
...|.+++..++.+.+.+..+...|..+
T Consensus 54 I~~L~~~~~~l~~~~~~l~~~~~~L~~~ 81 (88)
T d1nkpa_ 54 ILSVQAEEQKLISEEDLLRKRREQLKHK 81 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445544444444444444433
No 28
>d2inca1 a.25.1.2 (A:2-492) Toluene, o-xylene monooxygenase oxygenase subunit TouA {Pseudomonas stutzeri [TaxId: 316]}
Probab=21.85 E-value=16 Score=35.97 Aligned_cols=21 Identities=24% Similarity=0.599 Sum_probs=17.5
Q ss_pred cccCCCCccccccccCcceEEe
Q 013864 13 LSVDPNVPRWVCQNCRHFLCIV 34 (435)
Q Consensus 13 ~~~~~~~~~~~cq~c~~~l~i~ 34 (435)
....+.+|. .||.|+.|++++
T Consensus 386 ~~~~~~lp~-~C~~cq~P~~~~ 406 (491)
T d2inca1 386 LTVPETLPT-ICNMCNLPIAHT 406 (491)
T ss_dssp GGSCSSCBC-BCTTTCSBCBCC
T ss_pred cccCCCCCC-ccccCCCCcccC
Confidence 345678888 999999999986
No 29
>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment (residues 410-1202) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=20.82 E-value=77 Score=32.30 Aligned_cols=11 Identities=18% Similarity=0.344 Sum_probs=8.4
Q ss_pred cccCCCCcccc
Q 013864 13 LSVDPNVPRWV 23 (435)
Q Consensus 13 ~~~~~~~~~~~ 23 (435)
++-||.-|||.
T Consensus 355 ~g~~~AA~RYi 365 (760)
T d1bjta_ 355 GGKDAAAARYI 365 (760)
T ss_dssp TSTTCCCGGGC
T ss_pred CCCcchHHHHH
Confidence 46778888885
Done!