BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013865
(435 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ASY|A Chain A, Class Ii Aminoacyl Transfer Rna Synthetases: Crystal
Structure Of Yeast Aspartyl-Trna Synthetase Complexed
With Trna Asp
pdb|1ASY|B Chain B, Class Ii Aminoacyl Transfer Rna Synthetases: Crystal
Structure Of Yeast Aspartyl-Trna Synthetase Complexed
With Trna Asp
pdb|1ASZ|A Chain A, The Active Site Of Yeast Aspartyl-Trna Synthetase:
Structural And Functional Aspects Of The Aminoacylation
Reaction
pdb|1ASZ|B Chain B, The Active Site Of Yeast Aspartyl-Trna Synthetase:
Structural And Functional Aspects Of The Aminoacylation
Reaction
Length = 490
Score = 307 bits (786), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 176/379 (46%), Positives = 234/379 (61%), Gaps = 19/379 (5%)
Query: 62 NNYGDVPLQELQSVNDPQTGKWSEAVNGREWTVVGALNGSLKDQEVLIRGRVHTTRPVGN 121
+NYG +PL +QS + +TG+ + V D+EVL R RVH TR G
Sbjct: 6 DNYGKLPL--IQSRDSDRTGQ-------KRVKFVDLDEAKDSDKEVLFRARVHNTRQQGA 56
Query: 122 KLAFVVVRERVSTVQCLATV-KPDSVSKEMVRFVRSLSNEXXXXXXXXXXXXXXEIKGAT 180
LAF+ +R++ S +Q L K ++SK MV++ SL+ E IK AT
Sbjct: 57 TLAFLTLRQQASLIQGLVKANKEGTISKNMVKWAGSLNLESIVLVRGIVKKVDEPIKSAT 116
Query: 181 -QQVEVQIKKLYCVSRAAKT-PITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVID 238
Q +E+ I K+Y +S + PI +EDASRSEAE E A LP VN DTRL+ RVID
Sbjct: 117 VQNLEIHITKIYTISETPEALPILLEDASRSEAEAEAAG-----LPVVNLDTRLDYRVID 171
Query: 239 IRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACL 298
+RT+ NQ IFRIQ+ V +FR++L ++ F E+HTPKL+ SEGGS+VF + Y A L
Sbjct: 172 LRTVTNQAIFRIQAGVCELFREYLATKKFTEVHTPKLLGAPSEGGSSVFEVTYFKGKAYL 231
Query: 299 AQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIV 358
AQSPQ +KQ I DF RV+E GPVFRAE+S THRH+ EFTGLD+EM ++HY EV+D +
Sbjct: 232 AQSPQFNKQQLIVADFERVYEIGPVFRAENSNTHRHMTEFTGLDMEMAFEEHYHEVLDTL 291
Query: 359 DRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKP--KTLRLTFEEGVQMLKDAGVEIDP 416
LFV IF L E+E V KQYP E K K +RLT++EG++ML+ AG EI
Sbjct: 292 SELFVFIFSELPKRFAHEIELVRKQYPVEEFKLPKDGKMVRLTYKEGIEMLRAAGKEIGD 351
Query: 417 LGDLNTESERKLGQLVLEK 435
DL+TE+E+ LG+LV +K
Sbjct: 352 FEDLSTENEKFLGKLVRDK 370
>pdb|1EOV|A Chain A, Free Aspartyl-Trna Synthetase (Asprs) (E.C. 6.1.1.12) From
Yeast
Length = 487
Score = 307 bits (786), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 176/379 (46%), Positives = 234/379 (61%), Gaps = 19/379 (5%)
Query: 62 NNYGDVPLQELQSVNDPQTGKWSEAVNGREWTVVGALNGSLKDQEVLIRGRVHTTRPVGN 121
+NYG +PL +QS + +TG+ + V D+EVL R RVH TR G
Sbjct: 3 DNYGKLPL--IQSRDSDRTGQ-------KRVKFVDLDEAKDSDKEVLFRARVHNTRQQGA 53
Query: 122 KLAFVVVRERVSTVQCLATV-KPDSVSKEMVRFVRSLSNEXXXXXXXXXXXXXXEIKGAT 180
LAF+ +R++ S +Q L K ++SK MV++ SL+ E IK AT
Sbjct: 54 TLAFLTLRQQASLIQGLVKANKEGTISKNMVKWAGSLNLESIVLVRGIVKKVDEPIKSAT 113
Query: 181 -QQVEVQIKKLYCVSRAAKT-PITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVID 238
Q +E+ I K+Y +S + PI +EDASRSEAE E A LP VN DTRL+ RVID
Sbjct: 114 VQNLEIHITKIYTISETPEALPILLEDASRSEAEAEAAG-----LPVVNLDTRLDYRVID 168
Query: 239 IRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACL 298
+RT+ NQ IFRIQ+ V +FR++L ++ F E+HTPKL+ SEGGS+VF + Y A L
Sbjct: 169 LRTVTNQAIFRIQAGVCELFREYLATKKFTEVHTPKLLGAPSEGGSSVFEVTYFKGKAYL 228
Query: 299 AQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIV 358
AQSPQ +KQ I DF RV+E GPVFRAE+S THRH+ EFTGLD+EM ++HY EV+D +
Sbjct: 229 AQSPQFNKQQLIVADFERVYEIGPVFRAENSNTHRHMTEFTGLDMEMAFEEHYHEVLDTL 288
Query: 359 DRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKP--KTLRLTFEEGVQMLKDAGVEIDP 416
LFV IF L E+E V KQYP E K K +RLT++EG++ML+ AG EI
Sbjct: 289 SELFVFIFSELPKRFAHEIELVRKQYPVEEFKLPKDGKMVRLTYKEGIEMLRAAGKEIGD 348
Query: 417 LGDLNTESERKLGQLVLEK 435
DL+TE+E+ LG+LV +K
Sbjct: 349 FEDLSTENEKFLGKLVRDK 367
>pdb|3I7F|A Chain A, Aspartyl Trna Synthetase From Entamoeba Histolytica
pdb|3I7F|B Chain B, Aspartyl Trna Synthetase From Entamoeba Histolytica
Length = 548
Score = 268 bits (685), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 160/388 (41%), Positives = 225/388 (57%), Gaps = 43/388 (11%)
Query: 88 NGREWTVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVS 147
G ++T + L ++ ++ V IR RV R GN + F+ +R+ + T Q L +K +++S
Sbjct: 46 TGLKYTEIEELVPAMAEKTVTIRARVQAVRGKGN-MVFLFLRKGIYTCQALV-MKSETIS 103
Query: 148 KEMVRFVRSLSNEXXXXXXXXXXXXXXEIKGATQQ-VEVQIKKLYCVSRA-AKTPITIED 205
KE V+F + +S E I+ ATQQ VE+ + + VS A P+ IED
Sbjct: 104 KEFVQFCQKISAESICDITGIVKAVEKPIEKATQQDVEIHVTSIAVVSLAEYPLPMQIED 163
Query: 206 AS-------RSEAEIEKASK---------EGVQLPR----------------------VN 227
+ + E +I K + EG L + V+
Sbjct: 164 LTFPSSVFKKQEEDIAKVDEKIAKFLKDNEGKDLTKRPLKDEYAKLLKEKASAQKYVKVS 223
Query: 228 QDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVF 287
QDTRL+NR++D+RT+ N IFRIQS +FR+FL S+ FVEIHTPKLI SSEGGS +F
Sbjct: 224 QDTRLDNRMLDLRTVTNIAIFRIQSACCGLFREFLTSQKFVEIHTPKLIGCSSEGGSNIF 283
Query: 288 RLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEI 347
+ Y + A LAQSPQL+KQM+I GDF +VFE GPVFRAE+S T RHL EF GLD+EMEI
Sbjct: 284 EVKYFDRKAYLAQSPQLYKQMAIMGDFRKVFEVGPVFRAENSNTRRHLTEFEGLDIEMEI 343
Query: 348 KKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQML 407
++Y E +D++++LF IFD + EL+ + KQYPFE L Y+P LRLT++E ++ML
Sbjct: 344 VENYHECIDVMEKLFTFIFDEIPKRFPDELKVIRKQYPFEDLIYRP-FLRLTYKEAIEML 402
Query: 408 KDAGVEIDPLGDLNTESERKLGQLVLEK 435
+ +G I D T E KLG+L+ K
Sbjct: 403 RASGETIGDYDDFTTPQEVKLGELIKAK 430
>pdb|3NEL|A Chain A, Aspartyl-Trna Synthetase Complexed With Aspartic Acid
pdb|3NEL|B Chain B, Aspartyl-Trna Synthetase Complexed With Aspartic Acid
pdb|3NEM|A Chain A, Aspartyl-Trna Synthetase Complexed With Aspartyl Adenylate
pdb|3NEM|B Chain B, Aspartyl-Trna Synthetase Complexed With Aspartyl Adenylate
pdb|3NEN|A Chain A, Unliganded Aspartyl-Trna Synthetase From Thermococcus
Kodakarensis
pdb|3NEN|B Chain B, Unliganded Aspartyl-Trna Synthetase From Thermococcus
Kodakarensis
Length = 438
Score = 155 bits (393), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 108/334 (32%), Positives = 173/334 (51%), Gaps = 29/334 (8%)
Query: 102 LKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNEX 161
L Q+V + G V + +G + F+ +R+R VQ A K V E+ + + L +E
Sbjct: 14 LNGQKVKVAGWVWEVKDLGG-IKFLWIRDRDGIVQITAPKK--KVDPELFKLIPKLRSED 70
Query: 162 XXXXXXXXXXXXXEIKGATQQVEVQIKKLYCVSRAAKTPITIEDASRSEAEIEKASKEGV 221
A E+ +K+ ++RA +TP+ ++ + +AE+
Sbjct: 71 VVAVEGVVNFTPK----AKLGFEILPEKIVVLNRA-ETPLPLDPTGKVKAEL-------- 117
Query: 222 QLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSE 281
DTRL+NR +D+R IF+I+S V R F F+EIHTPK+IA ++E
Sbjct: 118 -------DTRLDNRFMDLRRPEVMAIFKIRSSVFKAVRDFFHENGFIEIHTPKIIATATE 170
Query: 282 GGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGL 341
GG+ +F + Y + A LAQSPQL+KQ+ + RV+E P+FRAE+ T RHL E +
Sbjct: 171 GGTELFPMKYFEEDAFLAQSPQLYKQIMMASGLDRVYEIAPIFRAEEHNTTRHLNEAWSI 230
Query: 342 DVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFE 401
D EM + EVM ++RL + + KEL+ + FE + K R++++
Sbjct: 231 DSEMAFIEDEEEVMSFLERLVAHAINYVREHNAKELDILN----FELEEPKLPFPRVSYD 286
Query: 402 EGVQMLKDAGVEIDPLG-DLNTESERKLGQLVLE 434
+ +++L D G EI P G D++TE ER LG+ ++E
Sbjct: 287 KALEILGDLGKEI-PWGEDIDTEGERLLGKYMME 319
>pdb|1B8A|A Chain A, Aspartyl-trna Synthetase
pdb|1B8A|B Chain B, Aspartyl-trna Synthetase
Length = 438
Score = 155 bits (391), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 107/334 (32%), Positives = 173/334 (51%), Gaps = 29/334 (8%)
Query: 102 LKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNEX 161
L Q+V + G V + +G + F+ +R+R VQ A K V E+ + + L +E
Sbjct: 14 LNGQKVKVAGWVWEVKDLGG-IKFLWIRDRDGIVQITAPKK--KVDPELFKLIPKLRSED 70
Query: 162 XXXXXXXXXXXXXEIKGATQQVEVQIKKLYCVSRAAKTPITIEDASRSEAEIEKASKEGV 221
A E+ +K+ ++RA +TP+ ++ + +AE+
Sbjct: 71 VVAVEGVVNFTPK----AKLGFEILPEKIVVLNRA-ETPLPLDPTGKVKAEL-------- 117
Query: 222 QLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSE 281
DTRLNNR +D+R IF+I+S V R F F+EIHTPK+IA ++E
Sbjct: 118 -------DTRLNNRFMDLRRPEVMAIFKIRSSVFKAVRDFFHENGFIEIHTPKIIATATE 170
Query: 282 GGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGL 341
GG+ +F + Y + A LA+SPQL+K++ + RV+E P+FRAE+ T RHL E +
Sbjct: 171 GGTELFPMKYFEEDAFLAESPQLYKEIMMASGLDRVYEIAPIFRAEEHNTTRHLNEAWSI 230
Query: 342 DVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFE 401
D EM + EVM ++RL + + KEL+ + FE + K R++++
Sbjct: 231 DSEMAFIEDEEEVMSFLERLVAHAINYVREHNAKELDILN----FELEEPKLPFPRVSYD 286
Query: 402 EGVQMLKDAGVEIDPLG-DLNTESERKLGQLVLE 434
+ +++L D G EI P G D++TE ER LG+ ++E
Sbjct: 287 KALEILGDLGKEI-PWGEDIDTEGERLLGKYMME 319
>pdb|1WYD|A Chain A, Crystal Structure Of Aspartyl-Trna Synthetase From
Sulfolobus Tokodaii
pdb|1WYD|B Chain B, Crystal Structure Of Aspartyl-Trna Synthetase From
Sulfolobus Tokodaii
Length = 429
Score = 148 bits (374), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 103/326 (31%), Positives = 168/326 (51%), Gaps = 32/326 (9%)
Query: 105 QEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNEXXXX 164
+EV+ G VH R +G K F+++R++ Q + V K F +S E
Sbjct: 17 KEVIWAGWVHLLRDLGGK-KFIILRDKTGLGQVV-------VDKNSSAF--GISQELTQE 66
Query: 165 XXXXXXXXXXEIKGATQQVEVQIKKLYCVSRAAKTPITIEDASRSEAEIEKASKEGVQLP 224
K A + +E+ +++ +S+A K P+ ++ + + +A+I
Sbjct: 67 SVIQVRGIVKADKRAPRGIELHAEEITLLSKA-KAPLPLDVSGKVKADI----------- 114
Query: 225 RVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGS 284
DTRL RV+D+R Q + +IQS FR+ L E F+EI TPK+IA ++EGG+
Sbjct: 115 ----DTRLRERVLDLRRQEMQAVIKIQSLALKAFRETLYKEGFIEIFTPKIIASATEGGA 170
Query: 285 AVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVE 344
+F + Y G+ A LAQSPQL+K++ + G RVFE P +RAE+S T HL EF +DVE
Sbjct: 171 QLFPVIYFGKEAFLAQSPQLYKEL-MAGVVERVFEVAPAWRAEESDTPFHLAEFISMDVE 229
Query: 345 MEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGV 404
M Y++VM +++++ I + K+EL+ + +EP + K RL + E +
Sbjct: 230 MAF-ADYNDVMQLLEKILHNIVKTIKEEGKEELKILN----YEPPEVKIPIKRLKYTEAI 284
Query: 405 QMLKDAGVEIDPLGDLNTESERKLGQ 430
++L+ G I D+ T R L +
Sbjct: 285 EILRSKGYNIKFGDDIGTPELRILNE 310
>pdb|1N9W|A Chain A, Crystal Structure Of The Non-Discriminating And Archaeal-
Type Aspartyl-Trna Synthetase From Thermus Thermophilus
pdb|1N9W|B Chain B, Crystal Structure Of The Non-Discriminating And Archaeal-
Type Aspartyl-Trna Synthetase From Thermus Thermophilus
pdb|3KFU|A Chain A, Crystal Structure Of The Transamidosome
pdb|3KFU|B Chain B, Crystal Structure Of The Transamidosome
pdb|3KFU|C Chain C, Crystal Structure Of The Transamidosome
pdb|3KFU|D Chain D, Crystal Structure Of The Transamidosome
Length = 422
Score = 130 bits (326), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 104/334 (31%), Positives = 167/334 (50%), Gaps = 44/334 (13%)
Query: 105 QEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNEXXXX 164
QEV + G +H R +G ++ F+++R+R VQ + + + +R VR L E
Sbjct: 14 QEVELLGFLHWRRDLG-RIQFLLLRDRSGVVQVVTGGLKLPLPESALR-VRGLVVENAK- 70
Query: 165 XXXXXXXXXXEIKGATQQVEVQIKKLYCVSRAAK-TPITIEDASRSEAEIEKASKEGVQL 223
A +EVQ K++ +S A + TP+ EI K
Sbjct: 71 --------------APGGLEVQAKEVEVLSPALEPTPV----------EIPKEEW----- 101
Query: 224 PRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGG 283
R N DT L R + +R + ++Q+ + FR++L ++F EI TPK++ +EGG
Sbjct: 102 -RANPDTLLEYRYVTLRGEKARAPLKVQAALVRGFRRYLDRQDFTEIFTPKVVRAGAEGG 160
Query: 284 SAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDV 343
S +F +DY + A LAQSPQL+KQ+ + G F RV+E PV+R E+ +T RHL E+ LDV
Sbjct: 161 SGLFGVDYFEKRAYLAQSPQLYKQI-MVGVFERVYEVAPVWRMEEHHTSRHLNEYLSLDV 219
Query: 344 EMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEG 403
EM ++M + + L + + N E+ + +P + RLT E
Sbjct: 220 EMGFIADEEDLMRLEEALLAEMLEEALNTAGDEIRLLGATWP----SFPQDIPRLTHAEA 275
Query: 404 VQMLKDAGVEID-PLG-DLNTESERKLGQLVLEK 435
++LK+ E+ P+G DL+ E+ER LG+ E+
Sbjct: 276 KRILKE---ELGYPVGQDLSEEAERLLGEYAKER 306
>pdb|1X54|A Chain A, Crystal Structure Of Asparaginyl-trna Synthetase From
Pyrococcus Horikoshii Complexed With
Asparaginyl-adenylate
pdb|1X55|A Chain A, Crystal Structure Of Asparaginyl-Trna Synthetase From
Pyrococcus Horikoshii Complexed With
Asparaginyl-Adenylate Analogue
pdb|1X56|A Chain A, Crystal Structure Of Asparaginyl-Trna Synthetase From
Pyrococcus Horikoshii
Length = 434
Score = 104 bits (260), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 91/330 (27%), Positives = 154/330 (46%), Gaps = 30/330 (9%)
Query: 102 LKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNEX 161
L ++V + G V+T VG K+ F+ +R+ VQ A V + V +E + L E
Sbjct: 14 LDGKKVRLAGWVYTNMRVGKKI-FLWIRDSTGIVQ--AVVAKNVVGEETFEKAKKLGRES 70
Query: 162 XXXXXXXXXXXXXEIKGATQQVEVQIKKLYCVSRAAKTPITIEDASRSEAEIEKASKEGV 221
GA EV ++KL + ++ PI E+AS E +
Sbjct: 71 SVIVEGIVKADERAPGGA----EVHVEKLEVIQAVSEFPIP--------ENPEQASPELL 118
Query: 222 QLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSE 281
L+ R + IRT I +++ + R++LL + + E+ P L+ G+ E
Sbjct: 119 ----------LDYRHLHIRTPKASAIMKVKETLIMAAREWLLKDGWHEVFPPILVTGAVE 168
Query: 282 GGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGL 341
GG+ +F+L Y + A L+QS QL+ + +I G +V+ P FRAE S T RHL EF L
Sbjct: 169 GGATLFKLKYFDKYAYLSQSAQLYLEAAIFG-LEKVWSLTPSFRAEKSRTRRHLTEFWHL 227
Query: 342 DVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLK-YKPKTLRLTF 400
++E + ++M + + L + + KKE+E LK +P R+++
Sbjct: 228 ELEAAWMDLW-DIMKVEEELVSYMVQRTLELRKKEIEMFRDD--LTTLKNTEPPFPRISY 284
Query: 401 EEGVQMLKDAGVEIDPLGDLNTESERKLGQ 430
+E + +L+ GV ++ DL + ER L +
Sbjct: 285 DEAIDILQSKGVNVEWGDDLGADEERVLTE 314
>pdb|3M4P|A Chain A, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs)
In Complex With Asparaginyl-Adenylate
pdb|3M4P|B Chain B, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs)
In Complex With Asparaginyl-Adenylate
pdb|3M4P|C Chain C, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs)
In Complex With Asparaginyl-Adenylate
pdb|3M4P|D Chain D, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs)
In Complex With Asparaginyl-Adenylate
pdb|3M4Q|A Chain A, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs)
pdb|3M4Q|B Chain B, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs)
Length = 456
Score = 91.7 bits (226), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 78/336 (23%), Positives = 146/336 (43%), Gaps = 31/336 (9%)
Query: 100 GSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSN 159
L+ + V +G + R L FV +R+ QC+ K +++ R S
Sbjct: 26 AGLEGKLVTFKGWAYHIRKARKTLIFVELRDGSGYCQCVIFGKELCEPEKVKLLTRECSL 85
Query: 160 EXXXXXXXXXXXXXXEIKGATQQVEVQIKKLYCVSRAAKTPITIEDASRSEAEIEKASKE 219
E +E+Q+ + + ++PI +E+ ++ I +
Sbjct: 86 EITGRLNAYAGKNHPPEIADILNLEMQVTEWKVI---GESPIDLENIINKDSSIPQ---- 138
Query: 220 GVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS 279
++ NR I IR+ Q + +++S++ FR++ +F EI P ++
Sbjct: 139 -----------KMQNRHIVIRSEHTQQVLQLRSEIQWYFRKYYHDNHFTEIQPPTIVKTQ 187
Query: 280 SEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFT 339
EGGS +F+L Y + A L QS QL+ + S+ G+ F +RAE S T RHL E+
Sbjct: 188 CEGGSTLFKLQYFNEPAYLTQSSQLYLE-SVIASLGKSFCMLSSYRAEQSRTVRHLAEYL 246
Query: 340 GLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLT 399
L+ E+ + ++++ ++ L T+ D NV + + K P L +P R+T
Sbjct: 247 HLEAELPFIS-FEDLLNHLEDLVCTVID---NVMAVHGDKIRKMNPHLKLPTRPFK-RMT 301
Query: 400 FEEGVQMLKDAGVEIDPLGDLNTESERKLGQLVLEK 435
+ + ++ D G+ LN + + G+ + EK
Sbjct: 302 YADAIKYCNDHGI-------LNKDKPFEYGEDISEK 330
>pdb|2XTI|A Chain A, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed
With Atp:mg And L-Asp-Beta-Noh Adenylate:ppi:mg
pdb|2XTI|B Chain B, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed
With Atp:mg And L-Asp-Beta-Noh Adenylate:ppi:mg
Length = 437
Score = 75.1 bits (183), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 84/322 (26%), Positives = 131/322 (40%), Gaps = 49/322 (15%)
Query: 103 KDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNEXX 162
+++ V I+G +H R G L F ++R+ +Q L K + + +L+
Sbjct: 12 RNERVCIKGWIHRMRRQGKSLMFFILRDGTGFLQVLLMDK-------LCQTYDALT---- 60
Query: 163 XXXXXXXXXXXXEIKGATQQVEVQIKKLYCVSRAAKTPITIEDASRSEAEIEKASKEGVQ 222
EI GA ++V A I D + + V
Sbjct: 61 -----VNTECTVEIYGAIKEVPEG-------KEAPNGHELIADFWKIIGNAPPGGIDNVL 108
Query: 223 LPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEG 282
+ D L+NR + IR + R+++ R+ + +VE+ P L+ EG
Sbjct: 109 NEEASVDKMLDNRHLVIRGENAAALLRLRAAATRAMREHFYNAGYVEVAPPTLVQTQVEG 168
Query: 283 GSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHL------- 335
GS +F LDY G+ + L QS QL+ + I G VF +RAE S T RHL
Sbjct: 169 GSTLFNLDYFGEQSFLTQSSQLYLETCI-PTLGDVFCIAQSYRAEKSRTRRHLAEYAHVE 227
Query: 336 --CEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQY--PFEPLKY 391
C F LD ME K V D VDRL + KK LE + ++ P P
Sbjct: 228 AECPFITLDDLME--KIEELVCDTVDRLLA------DEEAKKLLEHINPKFQPPERPF-- 277
Query: 392 KPKTLRLTFEEGVQMLKDAGVE 413
LR+ +++ ++ L++ VE
Sbjct: 278 ----LRMEYKDAIKWLQEHNVE 295
>pdb|2XGT|A Chain A, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed
With The Sulphamoyl Analogue Of Asparaginyl-Adenylate
pdb|2XGT|B Chain B, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed
With The Sulphamoyl Analogue Of Asparaginyl-Adenylate
Length = 435
Score = 74.7 bits (182), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 84/322 (26%), Positives = 131/322 (40%), Gaps = 49/322 (15%)
Query: 103 KDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNEXX 162
+++ V I+G +H R G L F ++R+ +Q L K + + +L+
Sbjct: 10 RNERVCIKGWIHRMRRQGKSLMFFILRDGTGFLQVLLMDK-------LCQTYDALT---- 58
Query: 163 XXXXXXXXXXXXEIKGATQQVEVQIKKLYCVSRAAKTPITIEDASRSEAEIEKASKEGVQ 222
EI GA ++V A I D + + V
Sbjct: 59 -----VNTECTVEIYGAIKEVPEG-------KEAPNGHELIADFWKIIGNAPPGGIDNVL 106
Query: 223 LPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEG 282
+ D L+NR + IR + R+++ R+ + +VE+ P L+ EG
Sbjct: 107 NEEASVDKMLDNRHLVIRGENAAALLRLRAAATRAMREHFYNAGYVEVAPPTLVQTQVEG 166
Query: 283 GSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHL------- 335
GS +F LDY G+ + L QS QL+ + I G VF +RAE S T RHL
Sbjct: 167 GSTLFNLDYFGEQSFLTQSSQLYLETCI-PTLGDVFCIAQSYRAEKSRTRRHLAEYAHVE 225
Query: 336 --CEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQY--PFEPLKY 391
C F LD ME K V D VDRL + KK LE + ++ P P
Sbjct: 226 AECPFITLDDLME--KIEELVCDTVDRLLA------DEEAKKLLEHINPKFQPPERPF-- 275
Query: 392 KPKTLRLTFEEGVQMLKDAGVE 413
LR+ +++ ++ L++ VE
Sbjct: 276 ----LRMEYKDAIKWLQEHNVE 293
>pdb|1EFW|A Chain A, Crystal Structure Of Aspartyl-Trna Synthetase From Thermus
Thermophilus Complexed To Trnaasp From Escherichia Coli
pdb|1EFW|B Chain B, Crystal Structure Of Aspartyl-Trna Synthetase From Thermus
Thermophilus Complexed To Trnaasp From Escherichia Coli
pdb|1G51|A Chain A, Aspartyl Trna Synthetase From Thermus Thermophilus At 2.4
A Resolution
pdb|1G51|B Chain B, Aspartyl Trna Synthetase From Thermus Thermophilus At 2.4
A Resolution
pdb|1L0W|A Chain A, Aspartyl-Trna Synthetase-1 From Space-Grown Crystals
pdb|1L0W|B Chain B, Aspartyl-Trna Synthetase-1 From Space-Grown Crystals
Length = 580
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 82/302 (27%), Positives = 129/302 (42%), Gaps = 32/302 (10%)
Query: 95 VGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLA-TVKPDSVSKEMVRF 153
G+L + +EV++ G V+ R +G L F+ +R+R VQ +A P + E VR
Sbjct: 7 AGSLRETHVGEEVVLEGWVNRRRDLGG-LIFLDLRDREGLVQLVAHPASPAYATAERVR- 64
Query: 154 VRSLSNEXXXXXXXXXXXXXXEIKGATQQVEVQIKKLYCVSRAAKTPITIEDASRSEAEI 213
+ AT +VEV++ L ++ A P ++ R
Sbjct: 65 ----PEWVVRAKGLVRLRPEPNPRLATGRVEVELSALEVLAEAKTPPFPVDAGWR----- 115
Query: 214 EKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTP 273
G + +++ RL R +D+R Q R++ +V FL E FV++ TP
Sbjct: 116 ------GEEEKEASEELRLKYRYLDLRRRRMQENLRLRHRVIKAIWDFLDREGFVQVETP 169
Query: 274 KLIAGSSEGGSAVFRLDYK---GQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSY 330
L + EG F + Y+ G L QSPQL KQM + R F+ FR ED
Sbjct: 170 FLTKSTPEGARD-FLVPYRHEPGLFYALPQSPQLFKQMLMVAGLDRYFQIARCFRDEDLR 228
Query: 331 THRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLK 390
R +FT LD+EM + +V+++ +RL +F +E V PF L
Sbjct: 229 ADRQ-PDFTQLDLEMSFVE-VEDVLELNERLMAHVF--------REALGVELPLPFPRLS 278
Query: 391 YK 392
Y+
Sbjct: 279 YE 280
>pdb|1EQR|A Chain A, Crystal Structure Of Free Aspartyl-Trna Synthetase From
Escherichia Coli
pdb|1EQR|B Chain B, Crystal Structure Of Free Aspartyl-Trna Synthetase From
Escherichia Coli
pdb|1EQR|C Chain C, Crystal Structure Of Free Aspartyl-Trna Synthetase From
Escherichia Coli
pdb|1IL2|A Chain A, Crystal Structure Of The E. Coli Aspartyl-Trna
Synthetase:yeast Trnaasp:aspartyl-Adenylate Complex
pdb|1IL2|B Chain B, Crystal Structure Of The E. Coli Aspartyl-Trna
Synthetase:yeast Trnaasp:aspartyl-Adenylate Complex
Length = 590
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 68/255 (26%), Positives = 107/255 (41%), Gaps = 32/255 (12%)
Query: 96 GALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVR 155
G L S Q+V + G V+ R +G+ L F+ +R+R VQ PD + ++
Sbjct: 7 GQLRLSHVGQQVTLCGWVNRRRDLGS-LIFIDMRDREGIVQVF--FDPDRA--DALKLAS 61
Query: 156 SLSNE---XXXXXXXXXXXXXXEIKGATQQVEVQIKKLYCVSRAAKTPITIEDASRSEAE 212
L NE AT ++EV L ++RA P+ + EA
Sbjct: 62 ELRNEFCIQVTGTVRARDEKNINRDMATGEIEVLASSLTIINRADVLPLDSNHVNTEEA- 120
Query: 213 IEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHT 272
RL R +D+R + ++++ ++ R+F+ F++I T
Sbjct: 121 ------------------RLKYRYLDLRRPEMAQRLKTRAKITSLVRRFMDDHGFLDIET 162
Query: 273 PKLIAGSSEGGSAVF---RLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDS 329
P L + EG R+ +KG+ L QSPQL KQ+ + F R ++ FR ED
Sbjct: 163 PMLTKATPEGARDYLVPSRV-HKGKFYALPQSPQLFKQLLMMSGFDRYYQIVKCFRDEDL 221
Query: 330 YTHRHLCEFTGLDVE 344
R EFT +DVE
Sbjct: 222 RADRQ-PEFTQIDVE 235
>pdb|1C0A|A Chain A, Crystal Structure Of The E. Coli Aspartyl-Trna Synthetase
: Trnaasp : Aspartyl-Adenylate Complex
Length = 585
Score = 68.6 bits (166), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 68/255 (26%), Positives = 107/255 (41%), Gaps = 32/255 (12%)
Query: 96 GALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVR 155
G L S Q+V + G V+ R +G+ L F+ +R+R VQ PD + ++
Sbjct: 7 GQLRLSHVGQQVTLCGWVNRRRDLGS-LIFIDMRDREGIVQVF--FDPDRA--DALKLAS 61
Query: 156 SLSNE---XXXXXXXXXXXXXXEIKGATQQVEVQIKKLYCVSRAAKTPITIEDASRSEAE 212
L NE AT ++EV L ++RA P+ + EA
Sbjct: 62 ELRNEFCIQVTGTVRARDEKNINRDMATGEIEVLASSLTIINRADVLPLDSNHVNTEEA- 120
Query: 213 IEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHT 272
RL R +D+R + ++++ ++ R+F+ F++I T
Sbjct: 121 ------------------RLKYRYLDLRRPEMAQRLKTRAKITSLVRRFMDDHGFLDIET 162
Query: 273 PKLIAGSSEGGSAVF---RLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDS 329
P L + EG R+ +KG+ L QSPQL KQ+ + F R ++ FR ED
Sbjct: 163 PMLTKATPEGARDYLVPSRV-HKGKFYALPQSPQLFKQLLMMSGFDRYYQIVKCFRDEDL 221
Query: 330 YTHRHLCEFTGLDVE 344
R EFT +DVE
Sbjct: 222 RADRQ-PEFTQIDVE 235
>pdb|4AH6|A Chain A, Human Mitochondrial Aspartyl-Trna Synthetase
pdb|4AH6|B Chain B, Human Mitochondrial Aspartyl-Trna Synthetase
pdb|4AH6|C Chain C, Human Mitochondrial Aspartyl-Trna Synthetase
pdb|4AH6|D Chain D, Human Mitochondrial Aspartyl-Trna Synthetase
Length = 617
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 82/173 (47%), Gaps = 24/173 (13%)
Query: 177 KGATQQVEVQIKKLYCVSRAAKTPITIED-ASRSEAEIEKASKEGVQLPRVNQDTRLNNR 235
K T ++E+++K ++ K P I++ ++EA RL R
Sbjct: 94 KMPTGEIEIKVKTAELLNACKKLPFEIKNFVKKTEA------------------LRLQYR 135
Query: 236 VIDIRTLANQGIFRIQSQVGNIFRQFLLS-ENFVEIHTPKLIAGSSEGGSAVFRLDYK-- 292
+D+R+ Q R++SQ+ R++L + FV+I TP L + GG+ F + +
Sbjct: 136 YLDLRSFQMQYNLRLRSQMVMKMREYLCNLHGFVDIETPTLFK-RTPGGAKEFLVPSREP 194
Query: 293 GQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEM 345
G+ L QSPQ KQ+ + G R F+ +R E S R EFT +D+EM
Sbjct: 195 GKFYSLPQSPQQFKQLLMVGGLDRYFQVARCYRDEGSRPDRQ-PEFTQIDIEM 246
>pdb|1BBU|A Chain A, Lysyl-Trna Synthetase (Lyss) Complexed With Lysine
pdb|1BBW|A Chain A, Lysyl-Trna Synthetase (Lyss)
Length = 504
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 89/181 (49%), Gaps = 14/181 (7%)
Query: 227 NQDTRLNNRVID-IRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTP--KLIAGSSEGG 283
+Q+ R R +D I ++ F+++SQ+ + RQF+++ F+E+ TP ++I G +
Sbjct: 161 DQEARYRQRYLDLISNDESRNTFKVRSQILSGIRQFMVNRGFMEVETPMMQVIPGGAAAR 220
Query: 284 SAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDV 343
+ + L +P+L+ + + G F RVFE FR E + RH EFT +++
Sbjct: 221 PFITHHNALDLDMYLRIAPELYLKRLVVGGFERVFEINRNFRNE-GISVRHNPEFTMMEL 279
Query: 344 EMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQY--PFEPL-------KYKPK 394
M Y +++++ + LF T+ + + V + PFE L KY+P+
Sbjct: 280 YMAYAD-YKDLIELTESLFRTLAQDILGKTEVTYGDVTLDFGKPFEKLTMREAIKKYRPE 338
Query: 395 T 395
T
Sbjct: 339 T 339
>pdb|1LYL|A Chain A, Lysyl-Trna Synthetase (Lysu) (E.C.6.1.1.6) Complexed With
Lysine
pdb|1LYL|B Chain B, Lysyl-Trna Synthetase (Lysu) (E.C.6.1.1.6) Complexed With
Lysine
pdb|1LYL|C Chain C, Lysyl-Trna Synthetase (Lysu) (E.C.6.1.1.6) Complexed With
Lysine
pdb|1E1O|A Chain A, Lysyl-Trna Synthetase (Lysu) Hexagonal For, Complexed With
Lysine
pdb|1E1T|A Chain A, Lysyl-Trna Synthetase (Lysu) Hexagonal Form Complexed With
The Lysyl_adenylate Intermediate
pdb|1E22|A Chain A, Lysyl-Trna Synthetase (Lysu) Hexagonal Form Complexed With
Lysine And The Non-Hydrolysable Atp Analogue Amp-Pcp
pdb|1E24|A Chain A, Lysyl-Trna Synthetase (Lysu) Hexagonal Form Complexed With
Lysine And Atp And Mn2+
Length = 504
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 88/183 (48%), Gaps = 18/183 (9%)
Query: 227 NQDTRLNNRVIDIRTLAN---QGIFRIQSQVGNIFRQFLLSENFVEIHTP--KLIAGSSE 281
+Q+ R R +D+ +AN + F ++S++ RQF+++ F+E+ TP ++I G +
Sbjct: 161 DQEVRYRQRYLDL--IANDKSRQTFVVRSKILAAIRQFMVARGFMEVETPMMQVIPGGAS 218
Query: 282 GGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGL 341
+ + L +P+L+ + + G F RVFE FR E + RH EFT +
Sbjct: 219 ARPFITHHNALDLDMYLRIAPELYLKRLVVGGFERVFEINRNFRNE-GISVRHNPEFTMM 277
Query: 342 DVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQY--PFEPL-------KYK 392
++ M Y +++++ + LF T+ + K + PFE L KY+
Sbjct: 278 ELYMAYAD-YHDLIELTESLFRTLAQEVLGTTKVTYGEHVFDFGKPFEKLTMREAIKKYR 336
Query: 393 PKT 395
P+T
Sbjct: 337 PET 339
>pdb|4EX5|A Chain A, Crystal Structure Of Lysyl-Trna Synthetase Lysrs From
Burkholderia Thailandensis Bound To Lysine
pdb|4EX5|B Chain B, Crystal Structure Of Lysyl-Trna Synthetase Lysrs From
Burkholderia Thailandensis Bound To Lysine
Length = 529
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 78/186 (41%), Gaps = 18/186 (9%)
Query: 226 VNQDTRLNNRVID-IRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKL--IAGSSEG 282
+Q+TR R +D I T + FR +++ R+F+ +F+E+ TP L I G +
Sbjct: 181 ADQETRYRQRYVDLIVTPETRTTFRARTKAIASIRKFMGDADFMEVETPMLHPIPGGAAA 240
Query: 283 GSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLD 342
V + L +P+L+ + I G F RVFE FR E + RH EFT
Sbjct: 241 KPFVTHHNALDMEMFLRIAPELYLKRLIVGGFERVFEINRNFRNE-GVSPRHNPEFT--- 296
Query: 343 VEMEIKKHYSE---VMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLT 399
ME Y++ +MD +RL + L QY L RLT
Sbjct: 297 -MMEFYAAYTDYRWLMDFTERL-------IRQAAVDALGTATIQYQGRELDLAQPFHRLT 348
Query: 400 FEEGVQ 405
+ +Q
Sbjct: 349 ITQAIQ 354
>pdb|4DPG|A Chain A, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|B Chain B, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|C Chain C, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|D Chain D, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|E Chain E, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|F Chain F, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|G Chain G, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|H Chain H, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
Length = 513
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 61/270 (22%), Positives = 104/270 (38%), Gaps = 43/270 (15%)
Query: 102 LKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNEX 161
L D + + GR+H R G KL F +R +Q +A + +E + L
Sbjct: 53 LTDITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNYKSEEEFIHINNKLRRGD 112
Query: 162 XXXXXXXXXXXXXEIKGATQQVEVQIKKLYCVSRAAKTPITIEDASRSEAEIEKASKEGV 221
G T++ E+ I EI S
Sbjct: 113 IIGVQGN--------PGKTKKGELSI---------------------IPYEITLLSPCLH 143
Query: 222 QLPRV-----NQDTRLNNRVIDIRTLANQGI---FRIQSQVGNIFRQFLLSENFVEIHTP 273
LP + +++TR R +D+ + N + F I+S++ R FL F+EI TP
Sbjct: 144 MLPHLHFGLKDKETRYRQRYLDL--ILNDFVRQKFIIRSKIITYIRSFLDELGFLEIETP 201
Query: 274 --KLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYT 331
+I G + + + + + +P+L+ +M + G RV+E G FR E
Sbjct: 202 MMNIIPGGAVAKPFITYHNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNE-GID 260
Query: 332 HRHLCEFTGLDVEMEIKKHYSEVMDIVDRL 361
H EFT + M Y ++M+I +++
Sbjct: 261 LTHNPEFTTCEFYMAYAD-YHDLMEITEKM 289
>pdb|3BJU|A Chain A, Crystal Structure Of Tetrameric Form Of Human Lysyl-Trna
Synthetase
pdb|3BJU|B Chain B, Crystal Structure Of Tetrameric Form Of Human Lysyl-Trna
Synthetase
pdb|3BJU|C Chain C, Crystal Structure Of Tetrameric Form Of Human Lysyl-Trna
Synthetase
pdb|3BJU|D Chain D, Crystal Structure Of Tetrameric Form Of Human Lysyl-Trna
Synthetase
Length = 521
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 61/270 (22%), Positives = 104/270 (38%), Gaps = 43/270 (15%)
Query: 102 LKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNEX 161
L D + + GR+H R G KL F +R +Q +A + +E + L
Sbjct: 53 LTDITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNYKSEEEFIHINNKLRRGD 112
Query: 162 XXXXXXXXXXXXXEIKGATQQVEVQIKKLYCVSRAAKTPITIEDASRSEAEIEKASKEGV 221
G T++ E+ I EI S
Sbjct: 113 IIGVQGN--------PGKTKKGELSI---------------------IPYEITLLSPCLH 143
Query: 222 QLPRV-----NQDTRLNNRVIDIRTLANQGI---FRIQSQVGNIFRQFLLSENFVEIHTP 273
LP + +++TR R +D+ + N + F I+S++ R FL F+EI TP
Sbjct: 144 MLPHLHFGLKDKETRYRQRYLDL--ILNDFVRQKFIIRSKIITYIRSFLDELGFLEIETP 201
Query: 274 --KLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYT 331
+I G + + + + + +P+L+ +M + G RV+E G FR E
Sbjct: 202 MMNIIPGGAVAKPFITYHNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNE-GID 260
Query: 332 HRHLCEFTGLDVEMEIKKHYSEVMDIVDRL 361
H EFT + M Y ++M+I +++
Sbjct: 261 LTHNPEFTTCEFYMAYAD-YHDLMEITEKM 289
>pdb|3E9H|A Chain A, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysylsulfamoyl Adenosine
pdb|3E9H|B Chain B, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysylsulfamoyl Adenosine
pdb|3E9H|C Chain C, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysylsulfamoyl Adenosine
pdb|3E9H|D Chain D, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysylsulfamoyl Adenosine
pdb|3E9I|A Chain A, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysine Hydroxamate-Amp
pdb|3E9I|B Chain B, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysine Hydroxamate-Amp
pdb|3E9I|C Chain C, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysine Hydroxamate-Amp
pdb|3E9I|D Chain D, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysine Hydroxamate-Amp
pdb|3A74|A Chain A, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With Diadenosine Tetraphosphate (Ap4a)
pdb|3A74|B Chain B, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With Diadenosine Tetraphosphate (Ap4a)
pdb|3A74|C Chain C, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With Diadenosine Tetraphosphate (Ap4a)
pdb|3A74|D Chain D, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With Diadenosine Tetraphosphate (Ap4a)
Length = 493
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/209 (22%), Positives = 88/209 (42%), Gaps = 30/209 (14%)
Query: 229 DTRLNNRVID-IRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKL--IAGSSEGGSA 285
+ R R +D I ++ F +S + R++L S ++E+ TP + +AG +
Sbjct: 154 EQRYRQRYLDLIMNPESKKTFITRSLIIQSMRRYLDSHGYLEVETPMMHAVAGGAAARPF 213
Query: 286 VFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEM 345
+ + + + + +LH + I G +V+E G VFR E T RH EFT L++
Sbjct: 214 ITHHNALDMTLYMRIAIELHLKRLIVGGLEKVYEIGRVFRNEGIST-RHNPEFTMLEL-Y 271
Query: 346 EIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTF----- 400
E + ++M + + L + ++ + L QY + P+ RL
Sbjct: 272 EAYADFRDIMKLTENL-------IAHIATEVLGTTKIQYGEHLVDLTPEWRRLHMVDAIK 324
Query: 401 -------------EEGVQMLKDAGVEIDP 416
EE ++ K+ GVE+ P
Sbjct: 325 EYVGVDFWRQMSDEEARELAKEHGVEVAP 353
>pdb|1NNH|A Chain A, Hypothetical Protein From Pyrococcus Furiosus Pfu-1801964
Length = 294
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 64/155 (41%), Gaps = 21/155 (13%)
Query: 250 IQSQVGNIFRQFLLSENF-------VEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSP 302
IQ+++ F + E F + T L + G ++ G L S
Sbjct: 17 IQTKILEYMTDFFVKEGFKWLLPVIISPITDPLWPDPAGEGMEPAEVEIYGVKMRLTHSM 76
Query: 303 QLHKQMSICGDFGRVFETGPVFRAEDSYTH--RHLCEFTGLDVEMEIKKHYSEVMDIVDR 360
LHKQ++I ++F P R E RH EFT LD E+E + ++M +++R
Sbjct: 77 ILHKQLAIAMGLKKIFVLSPNIRLESRQKDDGRHAYEFTQLDFEVE-RAKMEDIMRLIER 135
Query: 361 LFVTIFDGLNNVCKKELEAVAKQYP----FEPLKY 391
L +F +K E +++P FE +Y
Sbjct: 136 LVYGLF-------RKAEEWTGREFPKTKRFEVFEY 163
>pdb|3P8T|A Chain A, Crystal Structure Of The Archaeal Asparagine Synthetase A
pdb|3P8T|B Chain B, Crystal Structure Of The Archaeal Asparagine Synthetase A
pdb|3P8V|A Chain A, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Aspartic Acid
pdb|3P8V|B Chain B, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Aspartic Acid
pdb|3P8Y|A Chain A, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Asparagine
pdb|3P8Y|B Chain B, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Asparagine
pdb|3REU|A Chain A, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Aspartic Acid And Adenosine
Triphosphate
pdb|3REU|B Chain B, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Aspartic Acid And Adenosine
Triphosphate
pdb|3REX|A Chain A, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With Adenosine Monophosphate
pdb|3REX|B Chain B, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With Adenosine Monophosphate
pdb|3RL6|A Chain A, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Asparagine And Adenosine Monophosphate
pdb|3RL6|B Chain B, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Asparagine And Adenosine Monophosphate
Length = 294
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 45/99 (45%), Gaps = 10/99 (10%)
Query: 289 LDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTH--RHLCEFTGLDVEME 346
+D G L S LHKQ++I ++F P R E RH EFT LD E+E
Sbjct: 63 VDVYGVRMRLTHSMILHKQLAIAMGLEKIFVLSPNIRLESRRKDDGRHSYEFTQLDFEIE 122
Query: 347 IKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYP 385
K +VM +++ L +F +K E +++P
Sbjct: 123 GAKM-KDVMRLIEELIYGLF-------RKAEEWTGREFP 153
>pdb|3V0A|A Chain A, 2.7 Angstrom Crystal Structure Of BontAI IN COMPLEX WITH
NTNHA
pdb|3V0B|A Chain A, 3.9 Angstrom Crystal Structure Of BontAI IN COMPLEX WITH
NTNHA
Length = 1296
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 63 NYGDV--PLQELQSVNDPQTGKWSEAVNGRE----WTVVGALNGSLKDQEVLIRGRVHTT 116
NYG++ LQ+ Q + K+S+ +N + W V N L + ++ I GR+
Sbjct: 979 NYGEIIWTLQDTQEIKQRVVFKYSQMINISDYINRWIFVTITNNRLNNSKIYINGRLIDQ 1038
Query: 117 RPVGN 121
+P+ N
Sbjct: 1039 KPISN 1043
>pdb|3BTA|A Chain A, Crystal Structure Of Botulinum Neurotoxin Serotype A
pdb|2NYY|A Chain A, Crystal Structure Of Botulinum Neurotoxin Type A Complexed
With Monoclonal Antibody Cr1
pdb|2NZ9|A Chain A, Crystal Structure Of Botulinum Neurotoxin Type A Complexed
With Monoclonal Antibody Ar2
pdb|2NZ9|B Chain B, Crystal Structure Of Botulinum Neurotoxin Type A Complexed
With Monoclonal Antibody Ar2
Length = 1295
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 63 NYGDV--PLQELQSVNDPQTGKWSEAVNGRE----WTVVGALNGSLKDQEVLIRGRVHTT 116
NYG++ LQ+ Q + K+S+ +N + W V N L + ++ I GR+
Sbjct: 978 NYGEIIWTLQDTQEIKQRVVFKYSQMINISDYINRWIFVTITNNRLNNSKIYINGRLIDQ 1037
Query: 117 RPVGN 121
+P+ N
Sbjct: 1038 KPISN 1042
>pdb|3V0C|A Chain A, 4.3 Angstrom Crystal Structure Of An Inactive BontA
(E224qR363AY366F)
Length = 1312
Score = 33.1 bits (74), Expect = 0.29, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 63 NYGDV--PLQELQSVNDPQTGKWSEAVNGRE----WTVVGALNGSLKDQEVLIRGRVHTT 116
NYG++ LQ+ Q + K+S+ +N + W V N L + ++ I GR+
Sbjct: 979 NYGEIIWTLQDTQEIKQRVVFKYSQMINISDYINRWIFVTITNNRLNNSKIYINGRLIDQ 1038
Query: 117 RPVGN 121
+P+ N
Sbjct: 1039 KPISN 1043
>pdb|3FUO|A Chain A, The Crystal Structure Of Receptor Binding Domain Of
Botulinum Neurotoxin Serotype A
Length = 426
Score = 32.0 bits (71), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 63 NYGDV--PLQELQSVNDPQTGKWSEAVNGRE----WTVVGALNGSLKDQEVLIRGRVHTT 116
NYG++ LQ+ Q + K+S+ +N + W V N L + ++ I GR+
Sbjct: 109 NYGEIIWTLQDTQEIKQRVVFKYSQMINISDYINRWIFVTITNNRLNNSKIYINGRLIDQ 168
Query: 117 RPVGN 121
+P+ N
Sbjct: 169 KPISN 173
>pdb|2VU9|A Chain A, Crystal Structure Of Botulinum Neurotoxin Serotype A
Binding Domain In Complex With Gt1b
pdb|2VUA|A Chain A, Crystal Structure Of The Botulinum Neurotoxin Serotype A
Binding Domain
Length = 444
Score = 32.0 bits (71), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 63 NYGDV--PLQELQSVNDPQTGKWSEAVNGRE----WTVVGALNGSLKDQEVLIRGRVHTT 116
NYG++ LQ+ Q + K+S+ +N + W V N L + ++ I GR+
Sbjct: 126 NYGEIIWTLQDTQEIKQRVVFKYSQMINISDYINRWIFVTITNNRLNNSKIYINGRLIDQ 185
Query: 117 RPVGN 121
+P+ N
Sbjct: 186 KPISN 190
>pdb|3NKU|A Chain A, Crystal Structure Of The N-Terminal Domain Of DrraSIDM
FROM Legionella Pneumophila
pdb|3NKU|B Chain B, Crystal Structure Of The N-Terminal Domain Of DrraSIDM
FROM Legionella Pneumophila
Length = 213
Score = 31.6 bits (70), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 365 IFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKDAGV 412
+FD LNN+C++ A + YP +P+ P L T ++ LKD V
Sbjct: 124 VFDALNNLCQRIFTASNQIYP-DPIGINPSRLIGTPDDLFGXLKDGXV 170
>pdb|4AOD|A Chain A, Biomphalaria Glabrata Acetylcholine-Binding Protein Type 1
(Bgachbp1)
pdb|4AOD|B Chain B, Biomphalaria Glabrata Acetylcholine-Binding Protein Type 1
(Bgachbp1)
pdb|4AOD|C Chain C, Biomphalaria Glabrata Acetylcholine-Binding Protein Type 1
(Bgachbp1)
pdb|4AOD|D Chain D, Biomphalaria Glabrata Acetylcholine-Binding Protein Type 1
(Bgachbp1)
pdb|4AOD|E Chain E, Biomphalaria Glabrata Acetylcholine-Binding Protein Type 1
(Bgachbp1)
Length = 205
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 57/152 (37%), Gaps = 22/152 (14%)
Query: 256 NIFRQFL----LSENFVEIHTPKLIAGSSEGGSAVF--RLDYKGQSACLAQSPQLHKQMS 309
N F +F L+ EI TP + S G +F +L Q + PQL ++S
Sbjct: 66 NWFNEFTSFKELTVPIAEIWTPDIFIFDSVGAPEIFSDKLARVSQDGTVTYVPQLKVRLS 125
Query: 310 ICGDFGRVFETGPVFRAED-SYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDG 368
C ETG + S+TH E+ + +D+ D T F
Sbjct: 126 -CPLADLKLETGVTCSLKSGSWTHST----------QELTLEVNAKVDLGDYASDTRFQL 174
Query: 369 LNNVCKKELEAVAKQYPFEPLKYKPKTLRLTF 400
LN + KQYP P Y+ TL TF
Sbjct: 175 LNAT----QQVNRKQYPCCPETYEDTTLSFTF 202
>pdb|3G1Z|A Chain A, Structure Of Idp01693YJEA, A POTENTIAL T-Rna Synthetase
From Salmonella Typhimurium
pdb|3G1Z|B Chain B, Structure Of Idp01693YJEA, A POTENTIAL T-Rna Synthetase
From Salmonella Typhimurium
Length = 326
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 44/108 (40%), Gaps = 6/108 (5%)
Query: 292 KGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHY 351
+G + L SP+ H + + G VF+ FR E+ H H EFT L+ + HY
Sbjct: 68 QGINLYLMTSPEYHMKRLLAAGCGPVFQLCRSFRNEEMGRH-HNPEFTMLEW---YRPHY 123
Query: 352 S--EVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLR 397
+M+ VD L + D +A + +PL LR
Sbjct: 124 DMYRLMNEVDDLLQQVLDCQPAESLSYQQAFQRHLEIDPLSADKTQLR 171
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,534,072
Number of Sequences: 62578
Number of extensions: 397633
Number of successful extensions: 1153
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1105
Number of HSP's gapped (non-prelim): 40
length of query: 435
length of database: 14,973,337
effective HSP length: 102
effective length of query: 333
effective length of database: 8,590,381
effective search space: 2860596873
effective search space used: 2860596873
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)