Query 013865
Match_columns 435
No_of_seqs 333 out of 1618
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 08:10:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013865.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013865hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0556 Aspartyl-tRNA syntheta 100.0 1E-107 2E-112 806.8 31.5 407 13-435 6-415 (533)
2 PLN02850 aspartate-tRNA ligase 100.0 4.4E-93 9.5E-98 752.3 38.3 407 13-435 5-412 (530)
3 PTZ00401 aspartyl-tRNA synthet 100.0 1.1E-87 2.3E-92 711.9 37.6 390 18-435 7-432 (550)
4 KOG1885 Lysyl-tRNA synthetase 100.0 5.2E-80 1.1E-84 618.9 17.3 381 18-429 5-404 (560)
5 COG0017 AsnS Aspartyl/asparagi 100.0 7.7E-76 1.7E-80 597.5 31.8 310 92-432 4-317 (435)
6 PLN02502 lysyl-tRNA synthetase 100.0 2.2E-74 4.8E-79 610.8 32.9 371 16-425 3-395 (553)
7 TIGR00458 aspS_arch aspartyl-t 100.0 9.1E-73 2E-77 586.6 33.5 311 94-433 2-313 (428)
8 PRK05159 aspC aspartyl-tRNA sy 100.0 1.6E-72 3.5E-77 586.7 35.2 314 92-434 4-318 (437)
9 PLN02221 asparaginyl-tRNA synt 100.0 4.8E-70 1E-74 577.7 31.3 303 100-432 46-455 (572)
10 PRK03932 asnC asparaginyl-tRNA 100.0 1.1E-68 2.3E-73 559.3 32.9 309 94-432 5-334 (450)
11 TIGR00499 lysS_bact lysyl-tRNA 100.0 3.5E-69 7.7E-74 567.6 28.4 302 76-414 21-332 (496)
12 TIGR00457 asnS asparaginyl-tRN 100.0 2.7E-67 5.8E-72 548.7 32.7 302 101-432 13-336 (453)
13 PTZ00417 lysine-tRNA ligase; P 100.0 2.7E-67 5.9E-72 558.6 31.4 325 53-405 74-410 (585)
14 PRK12445 lysyl-tRNA synthetase 100.0 3.8E-67 8.1E-72 552.5 31.3 306 64-408 18-337 (505)
15 PRK00484 lysS lysyl-tRNA synth 100.0 8.5E-67 1.8E-71 549.3 32.9 300 76-414 22-329 (491)
16 PLN02603 asparaginyl-tRNA synt 100.0 1.9E-66 4.1E-71 550.3 31.7 300 101-432 104-447 (565)
17 PTZ00425 asparagine-tRNA ligas 100.0 2.9E-65 6.2E-70 540.6 31.3 305 101-432 78-469 (586)
18 PLN02532 asparagine-tRNA synth 100.0 3.3E-65 7.2E-70 542.6 30.7 284 117-432 130-516 (633)
19 PTZ00385 lysyl-tRNA synthetase 100.0 3.2E-64 6.9E-69 537.0 32.1 322 81-430 81-413 (659)
20 PRK02983 lysS lysyl-tRNA synth 100.0 1.1E-63 2.4E-68 563.9 29.7 300 76-414 629-932 (1094)
21 PLN02903 aminoacyl-tRNA ligase 100.0 3.1E-62 6.8E-67 522.0 30.8 278 92-405 60-344 (652)
22 TIGR00459 aspS_bact aspartyl-t 100.0 2.1E-61 4.5E-66 513.5 33.2 270 93-406 4-279 (583)
23 COG1190 LysU Lysyl-tRNA synthe 100.0 5.2E-62 1.1E-66 498.7 23.1 297 76-413 29-336 (502)
24 PRK00476 aspS aspartyl-tRNA sy 100.0 1E-60 2.2E-65 511.2 30.8 277 93-415 6-288 (588)
25 PRK12820 bifunctional aspartyl 100.0 9.9E-61 2.1E-65 514.9 30.9 286 93-407 7-297 (706)
26 COG0173 AspS Aspartyl-tRNA syn 100.0 1.9E-59 4.1E-64 482.2 27.9 273 93-406 4-282 (585)
27 KOG0554 Asparaginyl-tRNA synth 100.0 5E-57 1.1E-61 446.7 21.4 298 99-432 15-333 (446)
28 KOG0555 Asparaginyl-tRNA synth 100.0 3.1E-56 6.8E-61 439.5 26.1 368 15-433 50-429 (545)
29 cd00776 AsxRS_core Asx tRNA sy 100.0 2.9E-50 6.3E-55 404.5 18.7 206 226-433 2-209 (322)
30 KOG2411 Aspartyl-tRNA syntheta 100.0 2.8E-47 6.1E-52 384.9 22.4 282 92-413 35-324 (628)
31 PRK06462 asparagine synthetase 100.0 6.5E-48 1.4E-52 389.2 17.0 201 226-432 8-217 (335)
32 PF00152 tRNA-synt_2: tRNA syn 100.0 8.3E-47 1.8E-51 381.5 14.6 194 227-430 1-216 (335)
33 TIGR00462 genX lysyl-tRNA synt 100.0 2.3E-41 4.9E-46 337.5 14.4 163 248-434 1-186 (304)
34 cd00775 LysRS_core Lys_tRNA sy 100.0 2.7E-40 5.8E-45 333.2 18.8 178 242-430 2-182 (329)
35 cd00669 Asp_Lys_Asn_RS_core As 100.0 4E-37 8.6E-42 302.0 14.6 152 248-408 1-154 (269)
36 cd00777 AspRS_core Asp tRNA sy 100.0 5.4E-36 1.2E-40 295.6 15.9 151 248-421 1-154 (280)
37 PRK09350 poxB regulator PoxA; 100.0 9.9E-34 2.2E-38 282.9 15.2 163 245-433 2-190 (306)
38 COG2269 Truncated, possibly in 99.9 1.9E-27 4.1E-32 228.4 10.7 141 246-414 14-161 (322)
39 cd04317 EcAspRS_like_N EcAspRS 99.9 1.1E-23 2.5E-28 186.3 13.4 128 94-243 4-134 (135)
40 cd04322 LysRS_N LysRS_N: N-ter 99.9 3.9E-22 8.5E-27 170.0 13.7 107 106-239 1-108 (108)
41 cd04320 AspRS_cyto_N AspRS_cyt 99.8 5.3E-20 1.2E-24 155.2 14.2 100 106-205 1-102 (102)
42 cd04316 ND_PkAspRS_like_N ND_P 99.8 3.3E-19 7.1E-24 152.0 13.8 103 95-204 3-106 (108)
43 cd04319 PhAsnRS_like_N PhAsnRS 99.8 4E-19 8.7E-24 150.2 13.7 103 106-237 1-103 (103)
44 cd04100 Asp_Lys_Asn_RS_N Asp_L 99.7 4.3E-16 9.4E-21 127.0 11.8 85 106-195 1-85 (85)
45 cd04323 AsnRS_cyto_like_N AsnR 99.6 3.1E-15 6.8E-20 121.8 12.2 84 106-195 1-84 (84)
46 cd04321 ScAspRS_mt_like_N ScAs 99.6 2.5E-14 5.3E-19 117.1 12.4 85 106-195 1-86 (86)
47 cd04318 EcAsnRS_like_N EcAsnRS 99.6 3.4E-14 7.3E-19 115.0 11.6 79 106-194 1-81 (82)
48 PRK09537 pylS pyrolysyl-tRNA s 99.4 3.1E-13 6.7E-18 139.3 10.0 136 225-365 179-333 (417)
49 cd00768 class_II_aaRS-like_cor 99.2 5.8E-11 1.3E-15 110.6 7.9 115 250-365 1-132 (211)
50 PF01336 tRNA_anti-codon: OB-f 99.0 6.5E-09 1.4E-13 81.4 11.5 75 107-193 1-75 (75)
51 TIGR02367 PylS pyrrolysyl-tRNA 98.9 4.2E-09 9.1E-14 108.9 11.2 111 251-365 242-369 (453)
52 cd00496 PheRS_alpha_core Pheny 98.6 2E-07 4.3E-12 89.1 9.1 108 253-366 5-132 (218)
53 PF01409 tRNA-synt_2d: tRNA sy 98.5 5.3E-07 1.2E-11 87.9 10.1 115 253-368 21-156 (247)
54 cd00773 HisRS-like_core Class 98.4 1.4E-06 3E-11 85.3 10.5 101 248-349 2-116 (261)
55 PF00587 tRNA-synt_2b: tRNA sy 98.4 1.3E-06 2.9E-11 80.1 8.2 115 250-366 1-135 (173)
56 PRK00488 pheS phenylalanyl-tRN 98.3 4.1E-06 8.9E-11 84.8 10.9 119 252-372 111-244 (339)
57 TIGR00468 pheS phenylalanyl-tR 98.2 7.1E-06 1.5E-10 82.1 10.5 111 251-367 74-203 (294)
58 PRK00037 hisS histidyl-tRNA sy 98.2 9.6E-06 2.1E-10 84.4 11.2 118 246-364 16-150 (412)
59 cd00670 Gly_His_Pro_Ser_Thr_tR 98.2 7.1E-06 1.5E-10 78.4 9.4 102 248-349 2-125 (235)
60 TIGR00442 hisS histidyl-tRNA s 98.1 1.5E-05 3.3E-10 82.5 10.9 118 246-364 12-149 (397)
61 PRK04172 pheS phenylalanyl-tRN 98.0 3.5E-05 7.5E-10 82.4 11.2 116 249-365 233-401 (489)
62 PTZ00326 phenylalanyl-tRNA syn 98.0 2.6E-05 5.6E-10 82.6 9.9 51 314-365 357-408 (494)
63 cd00778 ProRS_core_arch_euk Pr 98.0 1.4E-05 3.1E-10 78.4 7.2 117 246-363 30-169 (261)
64 cd00772 ProRS_core Prolyl-tRNA 98.0 7E-05 1.5E-09 73.8 11.7 121 247-369 31-178 (264)
65 cd00771 ThrRS_core Threonyl-tR 97.9 5.4E-05 1.2E-09 75.8 10.5 102 246-347 28-147 (298)
66 PLN02853 Probable phenylalanyl 97.9 4.1E-05 8.8E-10 80.9 9.4 50 315-365 343-393 (492)
67 TIGR00409 proS_fam_II prolyl-t 97.9 0.00011 2.3E-09 80.0 12.4 123 246-369 45-188 (568)
68 TIGR00443 hisZ_biosyn_reg ATP 97.9 6.3E-05 1.4E-09 75.8 9.9 116 247-364 7-139 (314)
69 COG0016 PheS Phenylalanyl-tRNA 97.9 6.5E-05 1.4E-09 75.9 9.6 114 253-368 115-246 (335)
70 cd00779 ProRS_core_prok Prolyl 97.9 5.4E-05 1.2E-09 74.2 8.8 115 247-362 30-162 (255)
71 PRK09194 prolyl-tRNA synthetas 97.9 9.9E-05 2.2E-09 80.2 11.7 123 246-369 45-188 (565)
72 PF13393 tRNA-synt_His: Histid 97.9 0.00011 2.4E-09 73.4 11.1 117 246-363 8-139 (311)
73 cd00774 GlyRS-like_core Glycyl 97.8 3.9E-05 8.6E-10 75.0 7.5 96 247-348 31-143 (254)
74 cd00770 SerRS_core Seryl-tRNA 97.8 6.4E-05 1.4E-09 75.3 8.9 115 246-364 50-185 (297)
75 PRK12293 hisZ ATP phosphoribos 97.8 0.00014 3E-09 72.4 10.3 113 246-365 17-139 (281)
76 PLN02908 threonyl-tRNA synthet 97.8 0.00012 2.5E-09 81.4 10.4 120 245-366 318-455 (686)
77 PLN02788 phenylalanine-tRNA sy 97.8 0.00013 2.7E-09 75.7 9.7 111 254-368 73-213 (402)
78 PRK12292 hisZ ATP phosphoribos 97.7 0.00017 3.6E-09 75.0 10.6 119 246-365 15-151 (391)
79 PRK12305 thrS threonyl-tRNA sy 97.7 0.00014 3E-09 79.2 10.0 102 246-348 204-324 (575)
80 TIGR00414 serS seryl-tRNA synt 97.7 0.00019 4.1E-09 75.2 10.7 115 246-364 171-306 (418)
81 PRK05431 seryl-tRNA synthetase 97.7 0.00023 4.9E-09 74.8 10.5 115 246-364 168-304 (425)
82 PRK00413 thrS threonyl-tRNA sy 97.7 0.00027 5.9E-09 77.8 11.4 101 246-346 268-387 (638)
83 PLN02972 Histidyl-tRNA synthet 97.7 0.00028 6E-09 78.4 11.3 120 244-364 337-470 (763)
84 CHL00201 syh histidine-tRNA sy 97.6 0.00028 6.1E-09 74.2 10.3 118 246-364 16-154 (430)
85 PRK12420 histidyl-tRNA synthet 97.6 0.00033 7.2E-09 73.4 10.8 119 246-365 16-152 (423)
86 TIGR00418 thrS threonyl-tRNA s 97.6 0.00022 4.7E-09 77.4 9.6 116 247-363 199-339 (563)
87 PRK12444 threonyl-tRNA synthet 97.6 0.00029 6.2E-09 77.7 10.4 112 249-362 275-404 (639)
88 PRK14799 thrS threonyl-tRNA sy 97.6 0.00031 6.7E-09 75.9 10.0 119 246-366 166-302 (545)
89 PRK08661 prolyl-tRNA synthetas 97.6 0.00019 4.2E-09 76.4 8.3 116 246-363 42-180 (477)
90 PRK12421 ATP phosphoribosyltra 97.5 0.00076 1.7E-08 70.2 11.5 119 246-365 19-154 (392)
91 PLN02530 histidine-tRNA ligase 97.5 0.00057 1.2E-08 73.1 10.5 117 246-365 82-217 (487)
92 PRK12325 prolyl-tRNA synthetas 97.5 0.0006 1.3E-08 72.0 10.3 115 247-362 46-178 (439)
93 PRK03991 threonyl-tRNA synthet 97.5 0.00066 1.4E-08 74.4 10.9 121 246-367 225-364 (613)
94 TIGR00408 proS_fam_I prolyl-tR 97.5 0.0003 6.5E-09 74.9 8.0 115 248-363 38-175 (472)
95 PRK12295 hisZ ATP phosphoribos 97.3 0.0016 3.4E-08 67.4 10.3 109 253-365 9-133 (373)
96 PLN02837 threonine-tRNA ligase 97.1 0.0021 4.6E-08 70.6 9.7 119 245-365 244-381 (614)
97 COG0124 HisS Histidyl-tRNA syn 97.1 0.0031 6.6E-08 66.3 10.4 117 247-364 17-153 (429)
98 PLN02678 seryl-tRNA synthetase 97.0 0.0016 3.4E-08 68.9 7.5 116 246-363 172-310 (448)
99 cd04489 ExoVII_LU_OBF ExoVII_L 97.0 0.0088 1.9E-07 47.2 10.2 74 107-191 2-75 (78)
100 KOG2784 Phenylalanyl-tRNA synt 97.0 0.0011 2.3E-08 67.1 5.4 59 303-364 322-383 (483)
101 PF13742 tRNA_anti_2: OB-fold 96.7 0.016 3.5E-07 48.6 9.8 76 104-191 21-98 (99)
102 PRK04173 glycyl-tRNA synthetas 96.6 0.0071 1.5E-07 64.2 8.8 30 248-277 38-69 (456)
103 cd04487 RecJ_OBF2_like RecJ_OB 96.5 0.021 4.6E-07 45.3 8.9 73 107-193 1-73 (73)
104 COG0442 ProS Prolyl-tRNA synth 96.5 0.007 1.5E-07 64.7 7.8 116 247-363 46-179 (500)
105 PRK12294 hisZ ATP phosphoribos 96.5 0.027 5.9E-07 55.9 11.0 95 245-347 4-109 (272)
106 PLN02320 seryl-tRNA synthetase 96.4 0.0081 1.7E-07 64.2 7.6 117 247-367 232-370 (502)
107 TIGR00470 sepS O-phosphoseryl- 96.4 0.0053 1.1E-07 64.6 5.8 52 314-365 207-259 (533)
108 cd04485 DnaE_OBF DnaE_OBF: A s 96.3 0.044 9.6E-07 42.8 9.4 72 109-193 2-77 (84)
109 PRK07373 DNA polymerase III su 96.2 0.034 7.5E-07 58.9 10.6 85 95-192 271-359 (449)
110 COG1107 Archaea-specific RecJ- 96.1 0.0068 1.5E-07 64.7 4.9 88 92-194 202-289 (715)
111 cd03524 RPA2_OBF_family RPA2_O 96.0 0.12 2.5E-06 38.8 10.3 69 109-190 2-73 (75)
112 TIGR00415 serS_MJ seryl-tRNA s 95.9 0.047 1E-06 58.3 10.0 117 246-364 221-386 (520)
113 PRK00960 seryl-tRNA synthetase 95.9 0.02 4.3E-07 61.5 7.1 117 246-364 221-386 (517)
114 cd04478 RPA2_DBD_D RPA2_DBD_D: 95.8 0.11 2.4E-06 42.6 10.0 78 107-195 2-79 (95)
115 cd04482 RPA2_OBF_like RPA2_OBF 95.5 0.095 2.1E-06 43.3 8.5 75 107-196 1-77 (91)
116 COG0172 SerS Seryl-tRNA synthe 95.4 0.049 1.1E-06 57.1 7.8 117 246-364 172-307 (429)
117 cd04492 YhaM_OBF_like YhaM_OBF 95.1 0.52 1.1E-05 36.9 11.4 64 118-195 15-78 (83)
118 cd04474 RPA1_DBD_A RPA1_DBD_A: 95.0 0.23 5E-06 41.8 9.5 86 95-189 2-98 (104)
119 KOG2324 Prolyl-tRNA synthetase 94.9 0.094 2E-06 53.4 7.8 122 247-369 51-194 (457)
120 PRK07374 dnaE DNA polymerase I 94.8 0.16 3.4E-06 59.9 10.5 86 95-193 991-1080(1170)
121 cd04483 hOBFC1_like hOBFC1_lik 94.7 0.44 9.6E-06 39.4 10.1 76 109-192 2-91 (92)
122 PRK05673 dnaE DNA polymerase I 94.4 0.18 4E-06 59.2 9.8 88 94-194 967-1058(1135)
123 PF04076 BOF: Bacterial OB fol 94.2 0.33 7.3E-06 41.2 8.5 79 93-191 23-102 (103)
124 COG0423 GRS1 Glycyl-tRNA synth 94.2 0.11 2.4E-06 55.3 6.8 29 249-277 41-71 (558)
125 PRK06920 dnaE DNA polymerase I 94.0 0.33 7.1E-06 56.9 10.7 79 102-193 941-1023(1107)
126 PRK09616 pheT phenylalanyl-tRN 94.0 0.29 6.4E-06 53.3 9.8 111 253-364 363-488 (552)
127 cd04490 PolII_SU_OBF PolII_SU_ 93.9 1.1 2.4E-05 36.0 10.7 57 107-171 2-62 (79)
128 PRK05672 dnaE2 error-prone DNA 93.8 0.32 6.9E-06 56.8 10.2 86 97-195 946-1033(1046)
129 PRK06826 dnaE DNA polymerase I 93.7 0.48 1E-05 55.8 11.4 79 103-193 990-1072(1151)
130 COG0441 ThrS Threonyl-tRNA syn 93.5 0.1 2.2E-06 57.0 5.2 116 249-366 221-354 (589)
131 PRK07279 dnaE DNA polymerase I 93.1 0.59 1.3E-05 54.3 10.7 75 104-191 884-963 (1034)
132 TIGR00156 conserved hypothetic 93.0 0.71 1.5E-05 40.6 8.8 79 93-191 46-125 (126)
133 PF10451 Stn1: Telomere regula 92.6 0.45 9.8E-06 46.8 7.8 76 104-194 66-148 (256)
134 TIGR00389 glyS_dimeric glycyl- 92.5 0.14 3.1E-06 55.5 4.5 30 248-277 37-67 (551)
135 TIGR00469 pheS_mito phenylalan 92.5 0.74 1.6E-05 48.8 9.6 52 289-343 101-161 (460)
136 PRK10053 hypothetical protein; 92.1 1.1 2.4E-05 39.6 8.9 79 93-191 50-129 (130)
137 COG1570 XseA Exonuclease VII, 92.0 0.6 1.3E-05 49.1 8.2 75 105-191 24-99 (440)
138 COG3111 Periplasmic protein wi 91.8 1.2 2.5E-05 38.9 8.4 84 90-193 43-127 (128)
139 cd00769 PheRS_beta_core Phenyl 91.6 0.46 1E-05 44.5 6.4 109 253-365 4-137 (198)
140 cd04479 RPA3 RPA3: A subfamily 91.5 1.7 3.6E-05 36.6 9.0 55 100-170 11-65 (101)
141 COG3705 HisZ ATP phosphoribosy 91.4 0.52 1.1E-05 49.0 7.0 115 248-363 17-146 (390)
142 TIGR00617 rpa1 replication fac 91.3 1.9 4.2E-05 47.6 11.8 98 90-196 178-285 (608)
143 PRK10917 ATP-dependent DNA hel 90.9 1.2 2.6E-05 49.8 9.9 67 98-171 53-122 (681)
144 KOG1936 Histidyl-tRNA syntheta 90.8 0.8 1.7E-05 47.9 7.6 101 246-347 72-184 (518)
145 PF08661 Rep_fac-A_3: Replicat 89.8 1.9 4.2E-05 36.6 8.0 57 101-172 15-72 (109)
146 cd04488 RecG_wedge_OBF RecG_we 89.7 4.4 9.5E-05 30.6 9.4 56 109-171 2-60 (75)
147 COG4085 Predicted RNA-binding 89.6 1.7 3.8E-05 40.7 8.0 67 101-171 48-118 (204)
148 PRK07459 single-stranded DNA-b 89.4 9.4 0.0002 33.2 12.2 85 106-196 5-104 (121)
149 PRK15491 replication factor A; 88.6 3 6.5E-05 43.3 9.9 90 92-196 57-156 (374)
150 TIGR00237 xseA exodeoxyribonuc 88.6 2 4.3E-05 45.5 8.8 76 106-192 19-94 (432)
151 KOG2509 Seryl-tRNA synthetase 88.4 0.91 2E-05 47.5 5.9 117 245-363 182-319 (455)
152 cd04484 polC_OBF polC_OBF: A s 88.2 12 0.00026 30.1 11.2 74 107-191 2-80 (82)
153 PRK06863 single-stranded DNA-b 88.0 13 0.00027 34.4 12.6 57 134-196 53-111 (168)
154 PRK00286 xseA exodeoxyribonucl 87.7 2.6 5.6E-05 44.5 9.0 77 104-192 23-100 (438)
155 PF12869 tRNA_anti-like: tRNA_ 87.6 2 4.2E-05 37.9 6.9 65 101-170 64-130 (144)
156 PF00436 SSB: Single-strand bi 87.2 13 0.00028 30.4 11.3 54 134-193 49-104 (104)
157 PRK08486 single-stranded DNA-b 86.7 13 0.00029 34.7 12.1 44 153-196 63-108 (182)
158 PRK07275 single-stranded DNA-b 85.9 16 0.00034 33.6 12.0 85 106-196 4-106 (162)
159 PF03590 AsnA: Aspartate-ammon 85.4 16 0.00035 35.6 12.1 118 253-371 8-144 (244)
160 PRK06461 single-stranded DNA-b 84.9 13 0.00028 32.6 10.6 85 92-195 4-100 (129)
161 PRK06751 single-stranded DNA-b 84.9 19 0.00042 33.4 12.1 57 134-196 48-106 (173)
162 TIGR00643 recG ATP-dependent D 84.5 4.8 0.0001 44.6 9.4 66 97-171 25-95 (630)
163 PRK02801 primosomal replicatio 84.0 24 0.00053 29.5 12.1 52 134-193 49-100 (101)
164 PRK06293 single-stranded DNA-b 83.8 29 0.00062 31.9 12.6 58 133-196 43-102 (161)
165 PRK07274 single-stranded DNA-b 83.7 30 0.00064 30.4 12.4 44 153-196 61-105 (131)
166 PRK14699 replication factor A; 83.2 8.2 0.00018 41.5 10.2 88 93-196 58-156 (484)
167 COG1200 RecG RecG-like helicas 82.8 13 0.00028 41.4 11.5 83 97-194 53-139 (677)
168 PRK06752 single-stranded DNA-b 82.4 30 0.00064 29.4 12.4 57 134-196 48-106 (112)
169 KOG3108 Single-stranded DNA-bi 82.4 7.9 0.00017 38.4 8.9 75 105-191 69-143 (265)
170 COG5235 RFA2 Single-stranded D 82.1 9.7 0.00021 36.3 8.9 61 106-171 68-128 (258)
171 KOG1035 eIF-2alpha kinase GCN2 81.9 4.1 8.8E-05 47.9 7.6 119 246-368 930-1058(1351)
172 PRK13732 single-stranded DNA-b 81.9 32 0.00069 32.0 12.3 44 153-196 68-115 (175)
173 PRK13480 3'-5' exoribonuclease 81.8 14 0.00031 37.5 10.8 79 104-196 11-93 (314)
174 TIGR00621 ssb single stranded 81.7 35 0.00076 31.1 12.5 58 133-196 51-110 (164)
175 PRK12366 replication factor A; 81.6 7.8 0.00017 43.1 9.6 94 91-193 278-380 (637)
176 PRK07135 dnaE DNA polymerase I 80.8 7.3 0.00016 45.4 9.2 62 103-171 896-960 (973)
177 PRK07211 replication factor A; 79.9 16 0.00034 39.3 10.8 81 93-189 54-145 (485)
178 PRK08763 single-stranded DNA-b 79.5 46 0.001 30.6 12.4 44 153-196 66-111 (164)
179 PRK06958 single-stranded DNA-b 78.9 42 0.00092 31.4 12.1 58 133-196 52-111 (182)
180 PF03100 CcmE: CcmE; InterPro 77.1 23 0.00049 31.2 9.3 58 102-170 48-109 (131)
181 PRK12366 replication factor A; 76.2 15 0.00033 40.9 9.8 84 91-189 62-154 (637)
182 cd04496 SSB_OBF SSB_OBF: A sub 75.7 21 0.00045 28.8 8.3 56 132-193 43-100 (100)
183 PRK07080 hypothetical protein; 75.6 3.5 7.6E-05 41.7 4.2 48 316-365 153-201 (317)
184 TIGR00471 pheT_arch phenylalan 74.9 11 0.00024 41.1 8.3 112 251-365 364-491 (551)
185 PF15072 DUF4539: Domain of un 73.2 16 0.00035 29.9 6.8 56 108-170 6-61 (86)
186 PTZ00213 asparagine synthetase 72.9 44 0.00096 34.2 11.1 118 252-370 12-147 (348)
187 cd00645 AsnA Asparagine synthe 72.9 23 0.0005 35.6 9.1 106 264-370 18-136 (309)
188 PRK05813 single-stranded DNA-b 71.9 98 0.0021 29.8 13.4 86 104-196 109-210 (219)
189 PRK14699 replication factor A; 70.3 23 0.00049 38.2 9.0 91 93-196 277-376 (484)
190 PRK15491 replication factor A; 70.1 23 0.00049 36.9 8.8 81 104-196 176-266 (374)
191 cd04491 SoSSB_OBF SoSSB_OBF: A 68.1 47 0.001 26.1 8.5 54 122-191 23-77 (82)
192 PRK13254 cytochrome c-type bio 68.1 38 0.00082 30.6 8.7 58 102-170 49-109 (148)
193 COG1571 Predicted DNA-binding 66.9 30 0.00065 36.5 8.8 75 104-194 266-342 (421)
194 PRK14894 glycyl-tRNA synthetas 65.4 4.1 9E-05 43.9 2.3 31 316-346 167-199 (539)
195 PLN02265 probable phenylalanyl 64.2 21 0.00046 39.4 7.6 113 251-364 399-527 (597)
196 PRK08402 replication factor A; 64.1 45 0.00098 34.5 9.5 92 92-196 62-162 (355)
197 PRK05733 single-stranded DNA-b 64.0 1.2E+02 0.0027 28.0 12.2 56 134-195 54-113 (172)
198 PRK05813 single-stranded DNA-b 64.0 93 0.002 30.0 11.0 85 103-196 7-103 (219)
199 PRK06642 single-stranded DNA-b 63.6 1.1E+02 0.0025 27.5 11.8 44 153-196 68-117 (152)
200 TIGR02930 vnfG_nitrog V-contai 63.4 12 0.00025 32.0 4.1 50 386-435 41-90 (109)
201 cd00673 AlaRS_core Alanyl-tRNA 63.2 30 0.00064 33.7 7.4 96 252-364 2-109 (232)
202 PRK07217 replication factor A; 62.6 98 0.0021 31.5 11.2 92 92-201 72-167 (311)
203 PRK08182 single-stranded DNA-b 62.6 1.2E+02 0.0026 27.3 13.0 63 134-202 55-120 (148)
204 PRK06386 replication factor A; 62.6 78 0.0017 32.8 10.8 90 92-196 107-197 (358)
205 PRK07772 single-stranded DNA-b 62.5 1.4E+02 0.003 28.1 12.1 51 134-190 54-106 (186)
206 PRK09010 single-stranded DNA-b 62.3 1.4E+02 0.0029 27.9 12.1 57 134-196 55-116 (177)
207 TIGR02929 anfG_nitrog Fe-only 62.0 13 0.00029 31.6 4.2 50 386-435 41-90 (109)
208 TIGR00594 polc DNA-directed DN 61.8 14 0.00031 43.4 5.9 37 103-139 980-1021(1022)
209 PRK07211 replication factor A; 61.3 46 0.00099 35.9 9.2 79 104-196 171-259 (485)
210 PRK04036 DNA polymerase II sma 61.1 36 0.00077 36.8 8.5 73 95-171 143-216 (504)
211 PF03139 AnfG_VnfG: Vanadium/a 60.5 20 0.00044 30.7 5.1 51 385-435 43-93 (112)
212 PLN02734 glycyl-tRNA synthetas 60.1 3.3 7.2E-05 46.2 0.4 30 316-345 277-308 (684)
213 PRK05425 asparagine synthetase 58.2 1.2E+02 0.0025 31.0 10.8 106 264-370 29-147 (327)
214 TIGR00669 asnA aspartate--ammo 57.6 2.3E+02 0.0049 29.0 13.2 117 253-370 10-145 (330)
215 PRK13150 cytochrome c-type bio 56.9 1.6E+02 0.0035 27.0 10.6 72 102-196 55-130 (159)
216 PRK13165 cytochrome c-type bio 56.3 1.6E+02 0.0036 27.0 11.1 58 102-170 55-116 (160)
217 cd05694 S1_Rrp5_repeat_hs2_sc2 55.5 33 0.00072 26.9 5.4 48 108-167 7-54 (74)
218 PF13567 DUF4131: Domain of un 55.4 88 0.0019 27.0 8.8 60 104-174 75-146 (176)
219 TIGR01405 polC_Gram_pos DNA po 53.5 1.1E+02 0.0024 36.9 11.4 81 104-193 7-91 (1213)
220 PF11736 DUF3299: Protein of u 53.5 1.4E+02 0.003 26.9 9.6 85 99-191 50-143 (146)
221 cd05707 S1_Rrp5_repeat_sc11 S1 52.0 41 0.00089 25.3 5.3 51 108-166 3-54 (68)
222 COG2965 PriB Primosomal replic 49.5 71 0.0015 27.0 6.5 73 119-193 24-102 (103)
223 PRK00448 polC DNA polymerase I 48.2 1.5E+02 0.0031 36.5 11.4 90 93-193 227-320 (1437)
224 PF01411 tRNA-synt_2c: tRNA sy 47.3 68 0.0015 35.2 7.9 96 254-363 2-111 (552)
225 COG3689 Predicted membrane pro 46.7 49 0.0011 32.7 6.0 96 99-199 170-266 (271)
226 KOG2298 Glycyl-tRNA synthetase 45.5 5 0.00011 42.7 -1.0 29 317-345 212-242 (599)
227 cd05703 S1_Rrp5_repeat_hs12_sc 45.3 48 0.001 25.7 4.8 54 108-167 3-57 (73)
228 PRK06253 O-phosphoseryl-tRNA s 45.0 27 0.00058 37.9 4.2 50 316-365 210-260 (529)
229 PRK07218 replication factor A; 44.7 1.2E+02 0.0026 32.1 9.0 83 92-194 58-147 (423)
230 PRK00036 primosomal replicatio 44.4 91 0.002 26.7 6.6 52 133-195 47-98 (107)
231 cd04486 YhcR_OBF_like YhcR_OBF 43.8 1.6E+02 0.0035 23.3 8.4 54 108-171 1-59 (78)
232 PRK07218 replication factor A; 43.4 2.4E+02 0.0053 29.9 11.0 76 104-196 172-254 (423)
233 COG2502 AsnA Asparagine synthe 41.7 3.7E+02 0.008 26.8 11.4 117 253-370 14-145 (330)
234 cd05705 S1_Rrp5_repeat_hs14 S1 40.8 78 0.0017 24.7 5.4 51 108-166 6-60 (74)
235 cd05698 S1_Rrp5_repeat_hs6_sc5 40.4 65 0.0014 24.2 4.8 50 109-166 4-54 (70)
236 cd05687 S1_RPS1_repeat_ec1_hs1 38.7 60 0.0013 24.5 4.4 51 108-166 3-54 (70)
237 KOG1637 Threonyl-tRNA syntheta 37.7 52 0.0011 35.2 4.9 93 249-346 193-308 (560)
238 PRK01584 alanyl-tRNA synthetas 36.9 83 0.0018 34.9 6.6 98 252-364 4-110 (594)
239 cd05706 S1_Rrp5_repeat_sc10 S1 36.8 93 0.002 23.6 5.2 51 108-166 6-57 (73)
240 cd04452 S1_IF2_alpha S1_IF2_al 36.3 89 0.0019 23.7 5.1 53 108-166 6-59 (76)
241 CHL00192 syfB phenylalanyl-tRN 35.1 96 0.0021 35.1 6.9 111 253-365 402-530 (704)
242 cd04480 RPA1_DBD_A_like RPA1_D 35.0 2.3E+02 0.0049 22.4 8.6 72 109-187 7-80 (86)
243 PRK06341 single-stranded DNA-b 34.9 3.7E+02 0.0079 24.8 12.2 44 153-196 68-117 (166)
244 PF00970 FAD_binding_6: Oxidor 33.5 75 0.0016 25.5 4.4 62 101-169 30-94 (99)
245 cd05697 S1_Rrp5_repeat_hs5 S1_ 32.6 1E+02 0.0022 23.1 4.8 51 108-166 3-54 (69)
246 cd04472 S1_PNPase S1_PNPase: P 31.8 92 0.002 22.9 4.4 51 108-166 3-54 (68)
247 PF12569 NARP1: NMDA receptor- 31.6 81 0.0017 34.3 5.4 25 18-42 404-428 (517)
248 COG0072 PheT Phenylalanyl-tRNA 31.6 83 0.0018 35.2 5.7 113 250-366 352-488 (650)
249 cd05691 S1_RPS1_repeat_ec6 S1_ 31.1 1.1E+02 0.0023 23.0 4.7 50 109-166 4-54 (73)
250 PRK00629 pheT phenylalanyl-tRN 30.9 1.3E+02 0.0029 34.4 7.2 108 254-365 492-622 (791)
251 PF15513 DUF4651: Domain of un 30.5 57 0.0012 25.2 2.9 23 249-271 2-24 (62)
252 COG0587 DnaE DNA polymerase II 30.3 1.9E+02 0.004 34.7 8.4 62 104-171 976-1042(1139)
253 TIGR00472 pheT_bact phenylalan 30.1 1.1E+02 0.0024 35.0 6.5 106 256-365 498-629 (798)
254 COG2176 PolC DNA polymerase II 29.5 6.3E+02 0.014 30.7 12.1 78 106-194 241-324 (1444)
255 cd04454 S1_Rrp4_like S1_Rrp4_l 29.2 2.2E+02 0.0047 22.2 6.3 51 109-166 10-60 (82)
256 cd05693 S1_Rrp5_repeat_hs1_sc1 28.9 1.5E+02 0.0033 24.6 5.5 51 108-166 6-76 (100)
257 PRK13159 cytochrome c-type bio 28.5 3.4E+02 0.0074 24.8 8.0 58 102-170 49-110 (155)
258 PF12857 TOBE_3: TOBE-like dom 28.4 2.5E+02 0.0053 20.8 7.0 49 108-166 6-56 (58)
259 PRK13902 alaS alanyl-tRNA synt 28.1 90 0.0019 36.4 5.3 99 252-364 62-175 (900)
260 PLN02900 alanyl-tRNA synthetas 28.0 1.5E+02 0.0034 34.6 7.2 101 252-363 14-129 (936)
261 cd05685 S1_Tex S1_Tex: The C-t 27.3 1.3E+02 0.0028 21.9 4.5 51 108-166 3-54 (68)
262 cd05708 S1_Rrp5_repeat_sc12 S1 26.3 1.2E+02 0.0026 22.9 4.3 52 109-166 6-57 (77)
263 TIGR03683 A-tRNA_syn_arch alan 26.0 1.2E+02 0.0025 35.5 5.7 97 252-362 59-170 (902)
264 cd05702 S1_Rrp5_repeat_hs11_sc 25.9 1.7E+02 0.0037 22.1 5.0 53 108-166 3-56 (70)
265 PRK08582 hypothetical protein; 24.7 1.6E+02 0.0035 26.1 5.3 54 103-166 5-59 (139)
266 PF03459 TOBE: TOBE domain; I 24.1 2.9E+02 0.0063 20.2 8.0 50 108-166 6-56 (64)
267 cd05689 S1_RPS1_repeat_ec4 S1_ 24.0 1.3E+02 0.0027 22.8 3.9 28 108-141 6-33 (72)
268 TIGR00638 Mop molybdenum-pteri 23.9 3E+02 0.0066 20.3 7.3 50 108-166 8-58 (69)
269 PF08496 Peptidase_S49_N: Pept 23.8 98 0.0021 28.2 3.7 23 19-41 61-83 (155)
270 KOG0188 Alanyl-tRNA synthetase 23.1 91 0.002 35.3 3.9 97 252-366 5-117 (895)
271 cd04461 S1_Rrp5_repeat_hs8_sc7 22.7 1.6E+02 0.0036 23.0 4.5 55 102-166 13-68 (83)
272 COG0013 AlaS Alanyl-tRNA synth 22.5 1.1E+02 0.0023 35.5 4.4 96 253-363 10-115 (879)
273 COG1098 VacB Predicted RNA bin 22.3 2.5E+02 0.0054 24.8 5.7 51 108-166 8-59 (129)
274 cd04497 hPOT1_OB1_like hPOT1_O 22.1 4.2E+02 0.009 23.2 7.4 71 92-170 3-82 (138)
275 KOG2851 Eukaryotic-type DNA pr 21.8 1E+02 0.0022 32.0 3.6 53 302-356 68-124 (412)
276 cd05690 S1_RPS1_repeat_ec5 S1_ 21.7 1.3E+02 0.0028 22.3 3.6 28 108-141 3-30 (69)
277 PRK05853 hypothetical protein; 21.4 5E+02 0.011 23.7 7.9 53 132-190 42-96 (161)
278 PRK00252 alaS alanyl-tRNA synt 20.3 2.5E+02 0.0055 32.6 6.9 97 252-364 5-112 (865)
No 1
>KOG0556 consensus Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1e-107 Score=806.75 Aligned_cols=407 Identities=56% Similarity=0.823 Sum_probs=382.5
Q ss_pred ccCCCccccChhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCcccCChhhhhccCCCCCCcccccccCcce
Q 013865 13 EVDSSSQSISKKAAKKEAAKKAKEERRKEAEAAASAASALSIEEEGPLANNYGDVPLQELQSVNDPQTGKWSEAVNGREW 92 (435)
Q Consensus 13 ~~~~~~~~~sk~~lkk~~k~~~k~~kka~~~~~~~~~~~~~~~~~d~~~~~Yg~~~~~~~~~~~~~~p~~~~~~~~~~~~ 92 (435)
..+++|+ +|||++||.+|+++|..+|++++..+. ++..++++|.++++||++++.++|+. +++.|
T Consensus 6 ~~gE~gk-~SKK~~kk~a~~~eK~~~k~e~~~~~~--~a~~~~~ed~~~~~yg~~~l~~s~~~------------~~~~~ 70 (533)
T KOG0556|consen 6 ALGEDGK-LSKKALKKLAKKLEKLRKKQEREETAA--KAREAEAEDYAKERYGDLSLIQSQSK------------EGREL 70 (533)
T ss_pred hcccccc-ccHHHHHHHHHHHHHHHhhhhhhhhhh--hhhhhhhhhHHhhhcCcccccccccc------------cccce
Confidence 3456677 999999999999999999988654222 22335678889999999999988873 77899
Q ss_pred EEeccccCCCCCCEEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCC-CCcHHHHHHHhcCCCCcEEEEEEEEec
Q 013865 93 TVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPD-SVSKEMVRFVRSLSNESIVDVIGVVSV 171 (435)
Q Consensus 93 ~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~-~~s~~~~k~~~~l~~esiV~V~G~v~~ 171 (435)
+.+.+|+.+..|+.||||||||+.|.+| |+||++||+++.+|||++..+.. .+|++|++|+++|++||||+|.|+|++
T Consensus 71 ~~v~dl~~~~~~~~V~vRgrVhtsr~~G-K~~FlvLRq~~~tVQ~~~~~~~~~~isk~Mvkf~~~is~ESiV~v~g~v~k 149 (533)
T KOG0556|consen 71 TDVSDLDESNDGSEVLVRGRVHTSRLKG-KLCFLVLRQQGSTVQCLVAVNEDGTISKQMVKFAGSISKESIVDVRGVVVK 149 (533)
T ss_pred eehhhhhhhcCCceEEEEEEEeeccccc-eEEEEEEeccCceEEEEEEcCCCchHHHHHHHHHhhcCcceEEEEEEEEec
Confidence 9999999999999999999999999999 99999999999999999988765 389999999999999999999999999
Q ss_pred CCcccCCCc-eeEEEEEeEEEEeecC-CCCCcccccccchHHHHHhhhhcCCCCCCCCccccccccccccccHHHHHHHH
Q 013865 172 PDVEIKGAT-QQVEVQIKKLYCVSRA-AKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFR 249 (435)
Q Consensus 172 ~~~~~~~~t-~~lEi~v~~i~vls~~-~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~etrl~~R~Ldlr~~~~~~i~~ 249 (435)
++.+++||| +.+||+|.+|+|||.+ +.||++++||++++.+.+++.+.+..+.++++|||||||.||||||++|+|||
T Consensus 150 ~~~~i~scT~qdvEi~v~~iyviS~a~~~LPl~veDasrse~~eE~a~~~~~~~~~Vn~dtRLdnRvlDLRtptnqAiFr 229 (533)
T KOG0556|consen 150 VKEPIKSCTVQDVEIHVRKIYVISIALPNLPLQVEDASRSEPDEEKAAEPESTLARVNLDTRLDNRVLDLRTPTNQAIFR 229 (533)
T ss_pred CCCcccccccceeEEEEEEEEEEecccccCCeeehhhcccccchhhhcCCccccceecccccccceeeecccccchheee
Confidence 999999998 6699999999999999 99999999999987666666666667889999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCeEEeeCceeeccCCCCCcceeEeccCCCceeeccChHHHHhhhccCCCceeEEEecceecCCC
Q 013865 250 IQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDS 329 (435)
Q Consensus 250 ~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~~~~~~~L~~Spql~lq~~i~~g~~rVfeIgp~FR~E~s 329 (435)
+++.||.+||+||..+||+|||||+|+++++|||+++|.|+||+.++||+|||||||||+|||||+|||+||||||||+|
T Consensus 230 iq~gvc~~FRe~L~~kgF~EIhTpKli~asSEGGanvF~v~Yfk~~A~LAQSPQLyKQMaI~gdf~rVyeIGpVfRAEdS 309 (533)
T KOG0556|consen 230 IQAGVCFAFREYLRSKGFVEIHTPKLIGASSEGGANVFRVSYFKQKAYLAQSPQLYKQMAICGDFERVYEIGPVFRAEDS 309 (533)
T ss_pred hHHHHHHHHHHHHHhcCcceecccccccccCCCCceeEEEEeccCcchhhcChHHHHHHHHhcchhheeeecceeecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccccccceeeeeccccHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhcCCCcccCCCCCCceeeHHHHHHHHHH
Q 013865 330 YTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKD 409 (435)
Q Consensus 330 ~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~rit~~eai~lL~~ 409 (435)
||+|||+||++||+||+|..||||+|+++.+|+.+||+.|.++|+++|+.++.+||+++++|..|..|+||.||++||++
T Consensus 310 nthRhltEFvGLD~EMaf~~hYhEVm~~i~~lfv~IF~~l~ery~~Eie~Vr~qyp~e~fkf~~~~lrl~~~e~v~mLre 389 (533)
T KOG0556|consen 310 NTHRHLTEFVGLDLEMAFNEHYHEVMDTIGELFVFIFKGLRERYAKEIETVRKQYPFEPFKFLEPPLRLTFKEGVAMLRE 389 (533)
T ss_pred chhhhhHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCceEeehHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCcHHHHHHHHHhhcC
Q 013865 410 AGVEIDPLGDLNTESERKLGQLVLEK 435 (435)
Q Consensus 410 ~g~~~~~~~dl~te~E~~L~~~vkek 435 (435)
+|+++++.+||||+.||+||++|+||
T Consensus 390 aGvE~g~~dDlsTe~Ek~LG~lV~ek 415 (533)
T KOG0556|consen 390 AGVEMGDEDDLSTESEKKLGQLVREK 415 (533)
T ss_pred cCcccCCccccCChhHHHHHHHHHHH
Confidence 99999999999999999999999986
No 2
>PLN02850 aspartate-tRNA ligase
Probab=100.00 E-value=4.4e-93 Score=752.30 Aligned_cols=407 Identities=72% Similarity=1.074 Sum_probs=365.1
Q ss_pred ccCCCccccChhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCcccCChhhhhccCCCCCCcccccccCcce
Q 013865 13 EVDSSSQSISKKAAKKEAAKKAKEERRKEAEAAASAASALSIEEEGPLANNYGDVPLQELQSVNDPQTGKWSEAVNGREW 92 (435)
Q Consensus 13 ~~~~~~~~~sk~~lkk~~k~~~k~~kka~~~~~~~~~~~~~~~~~d~~~~~Yg~~~~~~~~~~~~~~p~~~~~~~~~~~~ 92 (435)
.++..++.+|||++||++|+++|++++++++++. ++ ...++|..+++||++|+.++++. .+.++|
T Consensus 5 ~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~yg~~~~~~~~~~-----------~~~~~~ 69 (530)
T PLN02850 5 AVEESGEKISKKAAKKAAAKAEKLRREATAKAAA-AS---LEDEDDPLASNYGDVPLEELQSK-----------VTGREW 69 (530)
T ss_pred cccccCCCcCHHHHHHHHHHHHHHHHHHHHHHHH-hh---hccccchhhccCCcccccccccc-----------cCCceE
Confidence 3455677799999999999999998876633211 11 12356888999999999876641 255789
Q ss_pred EEeccccCCCCCCEEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecC
Q 013865 93 TVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVP 172 (435)
Q Consensus 93 ~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~ 172 (435)
+.|++|+..+.|++|+|+||||++|.+| +++|++|||++++||||+..+...++++|++|+..|+.||+|.|+|+|+.+
T Consensus 70 ~~i~~l~~~~~g~~V~v~Grv~~~R~~g-k~~Fl~Lrd~~~~iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~ 148 (530)
T PLN02850 70 TDVSDLGEELAGSEVLIRGRVHTIRGKG-KSAFLVLRQSGFTVQCVVFVSEVTVSKGMVKYAKQLSRESVVDVEGVVSVP 148 (530)
T ss_pred eEhhhcchhhCCCEEEEEEEEEEEccCC-CeEEEEEEeCCcCEEEEEECCccccCHHHHHHHhCCCCCCEEEEEEEEEcc
Confidence 9999999999999999999999999999 699999999999999999876544789999999999999999999999998
Q ss_pred CcccCCCceeEEEEEeEEEEeecC-CCCCcccccccchHHHHHhhhhcCCCCCCCCccccccccccccccHHHHHHHHHH
Q 013865 173 DVEIKGATQQVEVQIKKLYCVSRA-AKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQ 251 (435)
Q Consensus 173 ~~~~~~~t~~lEi~v~~i~vls~~-~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~etrl~~R~Ldlr~~~~~~i~~~r 251 (435)
+.+++++++++||++++|+|||+| ++||++++|+++++.+.++....+..++++++++||+|||||||++.+++|||+|
T Consensus 149 ~~~~~~~t~~~El~~~~i~vls~a~~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~rl~~R~LdlR~~~~qaifrir 228 (530)
T PLN02850 149 KKPVKGTTQQVEIQVRKIYCVSKALATLPFNVEDAARSESEIEKALQTGEQLVRVGQDTRLNNRVLDLRTPANQAIFRIQ 228 (530)
T ss_pred CcCCCCCCccEEEEEeEEEEEeCCCCCCCCChhhcccccccccccccccccccccChhhhhcchhhhhcCHHHHHHHHHH
Confidence 888889999999999999999999 9999999998876543322111233467789999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCeEEeeCceeeccCCCCCcceeEeccCCCceeeccChHHHHhhhccCCCceeEEEecceecCCCCC
Q 013865 252 SQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYT 331 (435)
Q Consensus 252 s~i~~~~r~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~~~~~~~L~~Spql~lq~~i~~g~~rVfeIgp~FR~E~s~t 331 (435)
|.|+++||+||.++||+||+||+|+++++|||+++|.|+|||+++||+|||||||||++++|++|||+||||||||+|+|
T Consensus 229 s~i~~~~R~fl~~~gF~EV~TP~L~~~~~egga~~F~v~yf~~~~~L~qSpql~kq~li~~g~~rVfeIgp~FRaE~s~t 308 (530)
T PLN02850 229 SQVCNLFREFLLSKGFVEIHTPKLIAGASEGGSAVFRLDYKGQPACLAQSPQLHKQMAICGDFRRVFEIGPVFRAEDSFT 308 (530)
T ss_pred HHHHHHHHHHHHHCCcEEEeCCccccCCCccccceeeeccCCcceecCCCHHHHHHHHHHhcCCceEEEecccccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccccceeeeeccccHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhcCCCcccCCCCCCceeeHHHHHHHHHHcC
Q 013865 332 HRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKDAG 411 (435)
Q Consensus 332 ~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~rit~~eai~lL~~~g 411 (435)
+|||||||||||||+|.++|+|+|+++|+||++++..+.++|..+|+.++.++|++.+.+..+++|+||.||++||++.|
T Consensus 309 ~RHl~EFt~Le~Em~~~~~y~evm~~~E~ll~~i~~~l~~~~~~el~~i~~~~~~~~~~~~~~~~rit~~ea~~~L~~~g 388 (530)
T PLN02850 309 HRHLCEFTGLDLEMEIKEHYSEVLDVVDELFVAIFDGLNERCKKELEAIREQYPFEPLKYLPKTLRLTFAEGIQMLKEAG 388 (530)
T ss_pred CccchhhccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhcccCCcchhhhcCCcccCCHHHHHHHHHHcC
Confidence 99999999999999998889999999999999999999999999999998888888888888999999999999999999
Q ss_pred CCCCCCCCCCcHHHHHHHHHhhcC
Q 013865 412 VEIDPLGDLNTESERKLGQLVLEK 435 (435)
Q Consensus 412 ~~~~~~~dl~te~E~~L~~~vkek 435 (435)
+++++++||++++|+.||++|+++
T Consensus 389 ~~~~~~~dl~~~~E~~Lg~~v~~~ 412 (530)
T PLN02850 389 VEVDPLGDLNTESERKLGQLVKEK 412 (530)
T ss_pred CCCCCCCCcchHHHHHHHHHHHHh
Confidence 998889999999999999999864
No 3
>PTZ00401 aspartyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.1e-87 Score=711.88 Aligned_cols=390 Identities=43% Similarity=0.680 Sum_probs=342.7
Q ss_pred ccccChhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCcccCChhhhhccCCCCCCcccccccCcceEEecc
Q 013865 18 SQSISKKAAKKEAAKKAKEERRKEAEAAASAASALSIEEEGPLANNYGDVPLQELQSVNDPQTGKWSEAVNGREWTVVGA 97 (435)
Q Consensus 18 ~~~~sk~~lkk~~k~~~k~~kka~~~~~~~~~~~~~~~~~d~~~~~Yg~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~ 97 (435)
....+|+++||++|+++|++++++++++...++ .++|..+++||.+|+.|++. .+.++|+.|++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~g~~~~~~~~~------------~~~~~~~~i~~ 70 (550)
T PTZ00401 7 DAGAPAVEKKQSDKEARKAARLAEEKARAAEKA----ALVEKYKDVFGAAPMVQSTT------------YKSRTFIPVAV 70 (550)
T ss_pred ccCcchhhHHHHHHHHHhHHHHHHHHHHHHhhh----hccchhhccCCccccccccc------------cCCCceEEHHH
Confidence 456789999999999999988887543222211 15688899999999987654 35678999999
Q ss_pred ccCCC-CCCEEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCccc
Q 013865 98 LNGSL-KDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEI 176 (435)
Q Consensus 98 l~~~~-~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~~~ 176 (435)
|+..+ .|++|+|+|||+++|.+| |++|++|||++++||||+..+. .++++|++|+..|+.||+|+|+|+|+.++.++
T Consensus 71 l~~~~~~g~~V~v~Grv~~~R~~G-k~~Fl~LRd~~~~iQ~v~~~~~-~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~~ 148 (550)
T PTZ00401 71 LSKPELVDKTVLIRARVSTTRKKG-KMAFMVLRDGSDSVQAMAAVEG-DVPKEMIDFIGQIPTESIVDVEATVCKVEQPI 148 (550)
T ss_pred CCccccCCCEEEEEEEEEEEecCC-CeEEEEEEeCCcCEEEEEECCC-ccCHHHHHHHhcCCCCCEEEEEEEEEecCccC
Confidence 98777 899999999999999999 7899999999999999997643 26889999999999999999999999887777
Q ss_pred CCCc-eeEEEEEeEEEEeecC-CCCCcccccccchHHHHHhhhhcCCCCCCCCccccccccccccccHHHHHHHHHHHHH
Q 013865 177 KGAT-QQVEVQIKKLYCVSRA-AKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQV 254 (435)
Q Consensus 177 ~~~t-~~lEi~v~~i~vls~~-~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~etrl~~R~Ldlr~~~~~~i~~~rs~i 254 (435)
++++ +++||++++|+|||+| .+||++++|+++++. .....++++|||+|||||||++.++++|++||.|
T Consensus 149 ~~~~~~~~El~v~~i~vls~a~~~lP~~~~d~~~~~~---------~~~~~~~~dtrl~~R~LdlR~~~~~~i~r~rs~i 219 (550)
T PTZ00401 149 TSTSHSDIELKVKKIHTVTESLRTLPFTLEDASRKES---------DEGAKVNFDTRLNSRWMDLRTPASGAIFRLQSRV 219 (550)
T ss_pred CCCCCccEEEEeeEEEEEeCCCCCCCCCccccccccc---------ccccccChhhhhhhhhhhhcCHHHHHHHHHHHHH
Confidence 6666 6799999999999999 899999998876432 1234578999999999999999999999999999
Q ss_pred HHHHHHHhhcCCeEEeeCceeeccCCCCCcceeEeccCCCceeeccChHHHHhhhccCCCceeEEEecceecCCCCCCcc
Q 013865 255 GNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRH 334 (435)
Q Consensus 255 ~~~~r~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~~~~~~~L~~Spql~lq~~i~~g~~rVfeIgp~FR~E~s~t~rH 334 (435)
+++||+||.++||+||+||+|+++++|||+++|.++|||.++||+|||||||||+++||++|||+||||||||+++|+||
T Consensus 220 ~~~~R~fl~~~gFiEV~TP~L~~~~~egga~~F~v~yf~~~~~L~qSpql~kq~li~~g~~rVfeI~p~FRaE~s~T~RH 299 (550)
T PTZ00401 220 CQYFRQFLIDSDFCEIHSPKIINAPSEGGANVFKLEYFNRFAYLAQSPQLYKQMVLQGDVPRVFEVGPVFRSENSNTHRH 299 (550)
T ss_pred HHHHHHHHHHCCCEEEeCCccccCCCCccccccccccCCCCeecCCCHHHHHHHHHhcCCCCEEEEeCeEeCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccceeeeeccccHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhcCCCcccCCC----------------------
Q 013865 335 LCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYK---------------------- 392 (435)
Q Consensus 335 l~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~---------------------- 392 (435)
|||||||||||+|.++|+|+|+++|+||.+++..+.++ ..+++.++.++|++++.|.
T Consensus 300 l~EFt~Le~E~~~~~~y~evm~~~e~l~~~i~~~l~~~-~~ei~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 378 (550)
T PTZ00401 300 LTEFVGLDVEMRINEHYYEVLDLAESLFNYIFERLATH-TKELKAVCQQYPFEPLVWKLTPERMKELGVGVISEGVEPTD 378 (550)
T ss_pred ccchhhhhhhhHhcCCHHHHHHHHHHHHHHHHHHHHcc-chhhhhhccccccccccccccHHHHHhcCCCcccccccchH
Confidence 99999999999998789999999999999999999876 4567667666665543221
Q ss_pred ----------CCCceeeHHHHHHHHHHcC-CCCCCCCCCCcHHHHHHHHHhhcC
Q 013865 393 ----------PKTLRLTFEEGVQMLKDAG-VEIDPLGDLNTESERKLGQLVLEK 435 (435)
Q Consensus 393 ----------~p~~rit~~eai~lL~~~g-~~~~~~~dl~te~E~~L~~~vkek 435 (435)
.||+||+|.||++||++.| .+++|++||++++|+.|+++|+++
T Consensus 379 ~l~~~~~~~~~~~~rl~y~eai~lL~~~~~~~~~~~~dl~~~~E~~L~~~v~~~ 432 (550)
T PTZ00401 379 KYQARVHNMDSRMLRINYMHCIELLNTVLEEKMAPTDDINTTNEKLLGKLVKER 432 (550)
T ss_pred HHHHHHHhcCCCcccccHHHHHHHHHHhcccCCCcccccCchHHHHHHHHHHHh
Confidence 2489999999999999986 567888999999999999999864
No 4
>KOG1885 consensus Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.2e-80 Score=618.86 Aligned_cols=381 Identities=23% Similarity=0.344 Sum_probs=323.1
Q ss_pred ccccChhHHHHHHHHHHHHHHHHHHHHHHH------HHhhccccccCCCCCCcccCChhhhhcc----CCCCCCcccccc
Q 013865 18 SQSISKKAAKKEAAKKAKEERRKEAEAAAS------AASALSIEEEGPLANNYGDVPLQELQSV----NDPQTGKWSEAV 87 (435)
Q Consensus 18 ~~~~sk~~lkk~~k~~~k~~kka~~~~~~~------~~~~~~~~~~d~~~~~Yg~~~~~~~~~~----~~~~p~~~~~~~ 87 (435)
.+++||++|||+.++.+|+..++++++... .+......+++.++.+|+++|.+.++++ .|||||||++++
T Consensus 5 s~~~sk~~lkrr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~d~~qy~~~R~r~i~~l~~s~~~Pyphkf~vs~ 84 (560)
T KOG1885|consen 5 SEMLSKNELKRRSLAKQKALEKAKKASSKAAAPSVAAAKSVSKSEETSDPEQYFKIRSRAIEELRASGLNPYPHKFHVSI 84 (560)
T ss_pred hhhhhHHHHHHhHHHhhHHHHHHHhhhhccCCCccccccccccccccCCHHHHHHHHHHHHHHHhhcCCCCCcchhhccc
Confidence 478999999999999888776665332111 1111345677889999999999988765 499999999999
Q ss_pred cCcceE-Eeccc--cCCCCCCEEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEE
Q 013865 88 NGREWT-VVGAL--NGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVD 164 (435)
Q Consensus 88 ~~~~~~-~i~~l--~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~ 164 (435)
+..+|. ++..+ +++..+..|+|+||||++|.+|+||+|++|++++.+||+|++.+....+.++....+.|++||||+
T Consensus 85 si~~fieky~~l~~ge~~~n~~~svaGRI~s~R~sGsKL~Fydl~~~g~klQvm~~~~~~~~~~~F~~~~~~lkrGDiig 164 (560)
T KOG1885|consen 85 SIPDFIEKYLHLATGEHLDNEIVSVAGRIHSKRESGSKLVFYDLHGDGVKLQVMANAKKITSEEDFEQLHKFLKRGDIIG 164 (560)
T ss_pred cHHHHHHHhcCcccccccccceeeeeeeEeeeeccCCceEEEEEecCCeEEEEEEehhhcCCHHHHHHHHhhhhccCEEe
Confidence 986542 22222 455667789999999999999999999999999999999999876544455666778899999999
Q ss_pred EEEEEecCCcccCCCceeEEEEEeEEEEeecC-CCCCcccccccchHHHHHhhhhcCCCCCCCCcccccccccccccc-H
Q 013865 165 VIGVVSVPDVEIKGATQQVEVQIKKLYCVSRA-AKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRT-L 242 (435)
Q Consensus 165 V~G~v~~~~~~~~~~t~~lEi~v~~i~vls~~-~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~etrl~~R~Ldlr~-~ 242 (435)
|.|.+++ +.+++++|.+++|.+|||| ++||.. +++++|+|+|+++|||||+. +
T Consensus 165 ~~G~pgr------t~~gELSi~~~~~~lLspcLh~lP~~-------------------~~gLkD~EtRyrqRylDlilN~ 219 (560)
T KOG1885|consen 165 VSGYPGR------TKSGELSIIPNEIILLSPCLHMLPHE-------------------HFGLKDKETRYRKRYLDLILNP 219 (560)
T ss_pred eecCCCc------CCCceEEEeecchheecchhccCChh-------------------hcCCCcHHHHHHHHHHHHHcCH
Confidence 9997654 3457999999999999999 999942 67889999999999999987 7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCCCCCc--ceeEec--cCCCceeeccChHHHHhhhccCCCceeE
Q 013865 243 ANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGS--AVFRLD--YKGQSACLAQSPQLHKQMSICGDFGRVF 318 (435)
Q Consensus 243 ~~~~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~egga--~~F~v~--~~~~~~~L~~Spql~lq~~i~~g~~rVf 318 (435)
.++..|++|+.|+.+||.||+++||+||+||+|+.. .||| .||.+. .++.++|||+|||||+|||++||++|||
T Consensus 220 ~~r~~f~~RakII~~iRkfld~rgFlEVETPmmn~i--aGGA~AkPFIT~hndldm~LylRiAPEL~lK~LvVGGldrVY 297 (560)
T KOG1885|consen 220 EVRDRFRIRAKIISYIRKFLDSRGFLEVETPMMNMI--AGGATAKPFITHHNDLDMDLYLRIAPELYLKMLVVGGLDRVY 297 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcCceEecchhhccc--cCccccCceeecccccCcceeeeechHHHHHHHHhccHHHHH
Confidence 899999999999999999999999999999999754 4555 499984 5889999999999999999999999999
Q ss_pred EEecceecCCCCCCccccccccceeeeeccccHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhcCCCcccCCCCCCcee
Q 013865 319 ETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRL 398 (435)
Q Consensus 319 eIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~ri 398 (435)
|||++||||+. +.+||||||.|||||||+| |+|+|+++|+|++++++.+.+.|+......+...+.-.++|.+||+||
T Consensus 298 EIGr~FRNEGI-DlTHNPEFTTcEfY~AYad-y~dlm~~TE~l~s~mv~~i~G~~~i~y~p~~~~~~~~eldf~~pfrri 375 (560)
T KOG1885|consen 298 EIGRQFRNEGI-DLTHNPEFTTCEFYMAYAD-YEDLMDMTEELLSGMVKNITGSYKITYHPNGPEEPELELDFTRPFRRI 375 (560)
T ss_pred HHHHHhhhcCc-ccccCCCcchHHHHHHHhh-HHHHHHHHHHHHHHHHHhhcCceeEeecCCCCCCCceeeeccCCeeee
Confidence 99999999996 8999999999999999997 999999999999999999998887655443333344458899999999
Q ss_pred eHHHHHHHHHHcCCCCCCCCCCCcHHHHHHH
Q 013865 399 TFEEGVQMLKDAGVEIDPLGDLNTESERKLG 429 (435)
Q Consensus 399 t~~eai~lL~~~g~~~~~~~dl~te~E~~L~ 429 (435)
+|.+.++ ++.|++++++++|++++-+.+-
T Consensus 376 ~mi~~L~--k~lgi~l~~~~~l~~~e~~~~L 404 (560)
T KOG1885|consen 376 EMIEELE--KELGIKLPPGSTLHTEETRELL 404 (560)
T ss_pred eHHHHHH--HHhCCCCCCccccCchhhHHHH
Confidence 9999998 8899999999999998875543
No 5
>COG0017 AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.7e-76 Score=597.53 Aligned_cols=310 Identities=35% Similarity=0.568 Sum_probs=281.8
Q ss_pred eEEeccccCCCCCCEEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEec
Q 013865 92 WTVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSV 171 (435)
Q Consensus 92 ~~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~ 171 (435)
.+.+.++.....|+.|+|+|||+++|.+| +++|+.|||+++.||||+.++. +.+++++ ++.|+.||+|.|+|+|+.
T Consensus 4 ~~~i~di~~~~~~~~V~v~GWV~~~R~~g-~i~Fi~lrDgsg~iQ~v~~~~~--~~~~~~~-~~~L~~es~v~V~G~v~~ 79 (435)
T COG0017 4 RTYIKDIKPHVGGQEVTVRGWVHNKRDLG-KIIFLVLRDGSGFIQAVVPKNK--VYEELFK-AKKLTLESSVVVTGIVKA 79 (435)
T ss_pred eeeHHhhhccCCCcEEEEEEEeeeecccC-CeEEEEEEcCCcEEEEEEECCC--CcHHHhh-hhcCCCccEEEEEEEEEc
Confidence 35566776656669999999999999999 7999999999999999998642 3577888 899999999999999998
Q ss_pred CCcccCCCceeEEEEEeEEEEeecC-CCCCcccccccchHHHHHhhhhcCCCCCCCCccccccccccccccHHHHHHHHH
Q 013865 172 PDVEIKGATQQVEVQIKKLYCVSRA-AKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRI 250 (435)
Q Consensus 172 ~~~~~~~~t~~lEi~v~~i~vls~~-~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~etrl~~R~Ldlr~~~~~~i~~~ 250 (435)
.++ +.|.+||++++|.|++.+ .++|++.+.+ +++++|++|||||||++..++||++
T Consensus 80 ~~~----a~~g~El~v~~i~Vl~~a~~~~Pi~~~~~-------------------~~~e~lld~rhL~lR~~~~~Av~ki 136 (435)
T COG0017 80 SPK----APQGFELQVEKIEVLGEADPPYPIDKKEH-------------------SELETLLDNRHLDLRTPKIQAVFKI 136 (435)
T ss_pred CCC----CCCCEEEEEEEEEEeeccCCCCCcCcccc-------------------cCHHHHHhchheeccccchHHHHhH
Confidence 663 347899999999999999 7899986542 2689999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCeEEeeCceeeccCCCCCcceeEeccCCCceeeccChHHHHhhhccCCCceeEEEecceecCCCC
Q 013865 251 QSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSY 330 (435)
Q Consensus 251 rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~~~~~~~L~~Spql~lq~~i~~g~~rVfeIgp~FR~E~s~ 330 (435)
||.|++++|+||.++||+||+||+|+++++|||+++|.++||+.++||+||||||||+++++ |+|||+|||+||||+|+
T Consensus 137 rs~i~~a~~eff~~~gF~eV~tP~i~~~~~EGg~elF~v~yf~~~a~LtqS~QLyke~~~~a-l~rVf~igP~FRAE~s~ 215 (435)
T COG0017 137 RSSILRAIREFFYENGFTEVHTPIITASATEGGGELFKVDYFDKEAYLTQSPQLYKEALAAA-LERVFTIGPTFRAEKSN 215 (435)
T ss_pred HHHHHHHHHHHHHhCCcEEecCceEeccCCCCCceeEEEeecCcceEEecCHHHHHHHHHHH-hCceEEecCceecCCCC
Confidence 99999999999999999999999999999999999999999999999999999999988776 99999999999999999
Q ss_pred CCccccccccceeeeeccccHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhcCCCcccCC--CCCCceeeHHHHHHHHH
Q 013865 331 THRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKY--KPKTLRLTFEEGVQMLK 408 (435)
Q Consensus 331 t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~--~~p~~rit~~eai~lL~ 408 (435)
|.|||+||||+|.||+|++ ++|+|+++|+||+++++.+.++|..+|+.+++ +...+.. ..||+||||+||+++|+
T Consensus 216 T~RHL~EF~~ld~Emaf~~-~~d~m~l~E~~i~~i~~~v~e~~~~el~~l~~--~~~~l~~~~~~pf~ritY~eAieiL~ 292 (435)
T COG0017 216 TRRHLSEFWMLDPEMAFAD-LNDVMDLAEELIKYLFKKVLEECADELEFLGR--DNSELKRPESAPFPRITYKEAIEILE 292 (435)
T ss_pred CcchhhhHheecceeccCc-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhc--cchhhcccccCCccEEEHHHHHHHHH
Confidence 9999999999999999997 99999999999999999999999999999875 2223333 35899999999999999
Q ss_pred HcCCC-CCCCCCCCcHHHHHHHHHh
Q 013865 409 DAGVE-IDPLGDLNTESERKLGQLV 432 (435)
Q Consensus 409 ~~g~~-~~~~~dl~te~E~~L~~~v 432 (435)
+.|.+ ++|++||++++||+|++..
T Consensus 293 ~~~~e~~~~GdDl~~e~Er~l~e~~ 317 (435)
T COG0017 293 EKGFEKVEWGDDLGTEHERYLGEEY 317 (435)
T ss_pred hcCCcccCCCCccCCHHHHHHHHHh
Confidence 99998 9999999999999999653
No 6
>PLN02502 lysyl-tRNA synthetase
Probab=100.00 E-value=2.2e-74 Score=610.78 Aligned_cols=371 Identities=23% Similarity=0.353 Sum_probs=299.6
Q ss_pred CCccccChhHHHHHHHHHHHHHHHHHHHHHHHHH---h-----h--ccccccCCCCCCcccCChhhhhcc----CCCCCC
Q 013865 16 SSSQSISKKAAKKEAAKKAKEERRKEAEAAASAA---S-----A--LSIEEEGPLANNYGDVPLQELQSV----NDPQTG 81 (435)
Q Consensus 16 ~~~~~~sk~~lkk~~k~~~k~~kka~~~~~~~~~---~-----~--~~~~~~d~~~~~Yg~~~~~~~~~~----~~~~p~ 81 (435)
..++++||+++||++|++++++++++++++++++ . . .+++.+++++++|..+|+..++.+ .|||||
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~g~~pyp~ 82 (553)
T PLN02502 3 SNGEPLSKNALKKRLKAKQAEEEKAAKEEAKAAAAAAAAKGRSRKSAAADDETMDPTQYRANRLKKVEALRAKGVEPYPY 82 (553)
T ss_pred CCcccccHHHHHHHHhhhhhhHHHhhhHhhcccccccccCccccccccccccccCHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence 4678999999999999999998887654322110 0 0 111223456778988888876653 399999
Q ss_pred cccccccCcceE-Eeccc--cCCCCCCEEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCc-HHHHHHHhcC
Q 013865 82 KWSEAVNGREWT-VVGAL--NGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVS-KEMVRFVRSL 157 (435)
Q Consensus 82 ~~~~~~~~~~~~-~i~~l--~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s-~~~~k~~~~l 157 (435)
+|+++++..++. .+..+ +....|++|+|+|||+++|.+| |++|++|||+++.||||+..+....+ ..+..+...|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~GrV~~~R~~G-k~~F~~LrD~~g~iQv~~~~~~~~~~~~~~~~~~~~l 161 (553)
T PLN02502 83 KFDVTHTAPELQEKYGSLENGEELEDVSVSVAGRIMAKRAFG-KLAFYDLRDDGGKIQLYADKKRLDLDEEEFEKLHSLV 161 (553)
T ss_pred CCCCCccHHHHHHHhhccccccccCCCEEEEEEEEEEEecCC-CeEEEEEecCCccEEEEEECccccchhHHHHHHHhCC
Confidence 999998775542 23333 3456789999999999999999 89999999999999999986532111 2355555679
Q ss_pred CCCcEEEEEEEEecCCcccCCCceeEEEEEeEEEEeecC-CCCCcccccccchHHHHHhhhhcCCCCCCCCccccccccc
Q 013865 158 SNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRA-AKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRV 236 (435)
Q Consensus 158 ~~esiV~V~G~v~~~~~~~~~~t~~lEi~v~~i~vls~~-~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~etrl~~R~ 236 (435)
+.||+|.|+|++.+++ ++++||++++|.|||+| .+||.... +.+++++||++||
T Consensus 162 ~~gdiV~V~G~~~~t~------~gelel~~~~i~vLs~~l~plP~k~~-------------------~~~d~e~r~r~Ry 216 (553)
T PLN02502 162 DRGDIVGVTGTPGKTK------KGELSIFPTSFEVLTKCLLMLPDKYH-------------------GLTDQETRYRQRY 216 (553)
T ss_pred CCCcEEEEEEEEEecC------CCCEEEEEeEEEEEeccCCCCCcccc-------------------cccchhhhccchh
Confidence 9999999999998643 46899999999999999 89997533 3478999999999
Q ss_pred cccc-cHHHHHHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCCCCCcceeEe--ccCCCceeeccChHHHHhhhccCC
Q 013865 237 IDIR-TLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRL--DYKGQSACLAQSPQLHKQMSICGD 313 (435)
Q Consensus 237 Ldlr-~~~~~~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~egga~~F~v--~~~~~~~~L~~Spql~lq~~i~~g 313 (435)
|||| ++.++++|++||.|+++||+||+++||+||+||+|+++++++++.||.+ +||+.++||+||||||+|++++||
T Consensus 217 Ldl~~n~~~~~i~r~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~~gGA~a~pF~t~~n~~~~~~yL~~Spel~lK~L~v~g 296 (553)
T PLN02502 217 LDLIANPEVRDIFRTRAKIISYIRRFLDDRGFLEVETPMLNMIAGGAAARPFVTHHNDLNMDLYLRIATELHLKRLVVGG 296 (553)
T ss_pred hhhhcCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCeeeccCCCccccceeeecccCCcceeeecCHHHHHHHHHHhc
Confidence 9996 6999999999999999999999999999999999987643333458988 789999999999999999999999
Q ss_pred CceeEEEecceecCCCCCCccccccccceeeeeccccHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhcCCCcccCCCC
Q 013865 314 FGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKP 393 (435)
Q Consensus 314 ~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 393 (435)
++|||+||||||||+++ .|||||||||||||+|++ |+|+|+++|+||++++..+.+.|...+ ....+++..
T Consensus 297 ~~rVfeIg~~FRnE~~~-~rH~pEFtmlE~y~a~~d-~~dlm~~~E~li~~i~~~v~~~~~~~~-------~~~~i~~~~ 367 (553)
T PLN02502 297 FERVYEIGRQFRNEGIS-TRHNPEFTTCEFYQAYAD-YNDMMELTEEMVSGMVKELTGSYKIKY-------HGIEIDFTP 367 (553)
T ss_pred cCCEEEEcCeeeCCCCC-CccccceeehhhhhhcCC-HHHHHHHHHHHHHHHHHHHhccccccc-------CCccccCCC
Confidence 99999999999999986 599999999999999995 999999999999999999987765432 233567788
Q ss_pred CCceeeHHHHHHHHHHcCCCCCCCCCCCcHHH
Q 013865 394 KTLRLTFEEGVQMLKDAGVEIDPLGDLNTESE 425 (435)
Q Consensus 394 p~~rit~~eai~lL~~~g~~~~~~~dl~te~E 425 (435)
||+|+||.||++ +..|++++. |++.++.
T Consensus 368 p~~rit~~e~l~--~~~g~~~~~--~~~~~~~ 395 (553)
T PLN02502 368 PFRRISMISLVE--EATGIDFPA--DLKSDEA 395 (553)
T ss_pred CceeccHHHHHH--HHhCCCCCc--CCCHHHH
Confidence 999999999997 445766543 3444433
No 7
>TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_arch, represents aspartyl-tRNA synthetases from the eukaryotic cytosol and from the Archaea. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn).
Probab=100.00 E-value=9.1e-73 Score=586.64 Aligned_cols=311 Identities=38% Similarity=0.606 Sum_probs=281.2
Q ss_pred EeccccCCCCCCEEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCC
Q 013865 94 VVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPD 173 (435)
Q Consensus 94 ~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~ 173 (435)
.+++++..+.|++|+|+|||+++|.+| |++|++|||+++.||||++.+. +++++++++..|+.||+|.|+|+|+..+
T Consensus 2 ~~~~l~~~~~g~~v~i~G~v~~~R~~g-~~~Fi~lrd~~g~iQ~v~~~~~--~~~~~~~~~~~l~~~s~v~v~G~v~~~~ 78 (428)
T TIGR00458 2 YSADIKPEMDGQEVTFMGWVHEIRDLG-GLIFVLLRDREGLIQITAPAKK--VSKNLFKWAKKLNLESVVAVRGIVKIKE 78 (428)
T ss_pred chhhCchhhCCCEEEEEEEEEEEecCC-CcEEEEEEeCCeeEEEEEECCc--CCHHHHHHHhCCCCCcEEEEEEEEEecC
Confidence 356677778899999999999999999 6999999999999999998643 5778999999999999999999998643
Q ss_pred cccCCCceeEEEEEeEEEEeecC-CCCCcccccccchHHHHHhhhhcCCCCCCCCccccccccccccccHHHHHHHHHHH
Q 013865 174 VEIKGATQQVEVQIKKLYCVSRA-AKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQS 252 (435)
Q Consensus 174 ~~~~~~t~~lEi~v~~i~vls~~-~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~etrl~~R~Ldlr~~~~~~i~~~rs 252 (435)
+ .++++||++++|+|||+| .+||++.++.. ..++++|++|||||||++..+++|++||
T Consensus 79 ~----~~~~~el~~~~i~vl~~~~~~lP~~~~~~~-----------------~~~~~~r~~~R~ldlr~~~~~~~~r~Rs 137 (428)
T TIGR00458 79 K----APGGFEIIPTKIEVINEAKEPLPLDPTEKV-----------------PAELDTRLDYRFLDLRRPTVQAIFRIRS 137 (428)
T ss_pred C----CCCcEEEEEeEEEEEecCCCCCCCCccccC-----------------CCCHHHHhhhhhhhhCCHHHHHHHHHHH
Confidence 2 346899999999999999 89999876531 2578999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCeEEeeCceeeccCCCCCcceeEeccCCCceeeccChHHHHhhhccCCCceeEEEecceecCCCCCC
Q 013865 253 QVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTH 332 (435)
Q Consensus 253 ~i~~~~r~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~~~~~~~L~~Spql~lq~~i~~g~~rVfeIgp~FR~E~s~t~ 332 (435)
.|++++|+||.++||+||+||+|+++++|||+++|.++||+.++||+||||||||+++++|++|||+||||||||+++|+
T Consensus 138 ~i~~~iR~ff~~~gf~EV~TP~L~~~~~eg~~~~f~v~~~~~~~yL~~Spql~~q~li~~g~~rVf~i~~~FR~E~~~t~ 217 (428)
T TIGR00458 138 GVLESVREFLAEEGFIEVHTPKLVASATEGGTELFPITYFEREAFLGQSPQLYKQQLMAAGFERVYEIGPIFRAEEHNTH 217 (428)
T ss_pred HHHHHHHHHHHHCCCEEEeCCceecCCCCCCcceeeeEecCCcEEECcCHHHHHHHHHhcccCcEEEEecccccCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999889
Q ss_pred ccccccccceeeeeccccHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhcCCCcccCCCCCCceeeHHHHHHHHHHcCC
Q 013865 333 RHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKDAGV 412 (435)
Q Consensus 333 rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~rit~~eai~lL~~~g~ 412 (435)
|||||||||||||+|++ |+|+|+++|+||.+++..+.++|..+++.++..++. ...||+||||.||+++|++.|.
T Consensus 218 rHl~EFt~lE~e~a~~~-~~dlm~~~e~li~~i~~~~~~~~~~~~~~~~~~~~~----~~~pf~rity~eA~~~l~~~g~ 292 (428)
T TIGR00458 218 RHLNEATSIDIEMAFED-HHDVMDILEELVVRVFEDVPERCAHQLETLEFKLEK----PEGKFVRLTYDEAIEMANAKGV 292 (428)
T ss_pred cchheeeEeeeeeccCC-HHHHHHHHHHHHHHHHHHHHhcchhhhhhccccccc----CCCCceEEEHHHHHHHHHHcCC
Confidence 99999999999999996 999999999999999999999988877654332211 1358999999999999999999
Q ss_pred CCCCCCCCCcHHHHHHHHHhh
Q 013865 413 EIDPLGDLNTESERKLGQLVL 433 (435)
Q Consensus 413 ~~~~~~dl~te~E~~L~~~vk 433 (435)
+++|++||++++|+.|++.+.
T Consensus 293 ~~~~~~~l~~~~E~~l~~~~~ 313 (428)
T TIGR00458 293 EIGWGEDLSTEAEKALGEEMD 313 (428)
T ss_pred CCCCccccchHHHHHHHHHhC
Confidence 999999999999999998653
No 8
>PRK05159 aspC aspartyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.6e-72 Score=586.70 Aligned_cols=314 Identities=39% Similarity=0.623 Sum_probs=285.9
Q ss_pred eEEeccccCCCCCCEEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEec
Q 013865 92 WTVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSV 171 (435)
Q Consensus 92 ~~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~ 171 (435)
.+.+++|.....|++|+|+|||+++|.+| |++|++|||+++.||||++.+. + ++++++++.|+.||+|.|+|+|..
T Consensus 4 ~~~~~~l~~~~~g~~V~i~GrV~~~R~~g-k~~Fl~LrD~~g~iQ~v~~~~~--~-~~~~~~~~~L~~gs~V~v~G~v~~ 79 (437)
T PRK05159 4 RHLTSELTPELDGEEVTLAGWVHEIRDLG-GIAFLILRDRSGIIQVVVKKKV--D-EELFETIKKLKRESVVSVTGTVKA 79 (437)
T ss_pred eeEhhhCChhhCCCEEEEEEEeEeeecCC-CeEEEEEEcCCcEEEEEEeCCc--c-HHHHHHHhCCCCCcEEEEEEEEEc
Confidence 46888999888999999999999999999 8999999999999999998643 2 678889999999999999999987
Q ss_pred CCcccCCCceeEEEEEeEEEEeecC-CCCCcccccccchHHHHHhhhhcCCCCCCCCccccccccccccccHHHHHHHHH
Q 013865 172 PDVEIKGATQQVEVQIKKLYCVSRA-AKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRI 250 (435)
Q Consensus 172 ~~~~~~~~t~~lEi~v~~i~vls~~-~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~etrl~~R~Ldlr~~~~~~i~~~ 250 (435)
+++ ..+++||++++|.|||+| .++|+...+. ...+.++|++|||||||++.++++|++
T Consensus 80 ~~~----~~~~~el~~~~i~vls~a~~~~P~~~~~~-----------------~~~~~~~~~~~r~Ldlr~~~~~~~l~~ 138 (437)
T PRK05159 80 NPK----APGGVEVIPEEIEVLNKAEEPLPLDISGK-----------------VLAELDTRLDNRFLDLRRPRVRAIFKI 138 (437)
T ss_pred CCC----CCCCEEEEEeEEEEEeCCCCCCCCCcccc-----------------ccCCHHHHhhCcceecCCHHHHHHHHH
Confidence 542 236799999999999999 7999875432 114689999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCeEEeeCceeeccCCCCCcceeEeccCCCceeeccChHHHHhhhccCCCceeEEEecceecCCCC
Q 013865 251 QSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSY 330 (435)
Q Consensus 251 rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~~~~~~~L~~Spql~lq~~i~~g~~rVfeIgp~FR~E~s~ 330 (435)
||.|++++|+||.++||+||+||+|+++++|||++.|.++|||.++||+||||||||+++++|++|||+||||||||+++
T Consensus 139 Rs~i~~~iR~ff~~~gf~EV~TP~L~~~~~eg~~~~f~~~~~~~~~~L~~Spql~~q~l~~~g~~rVf~i~~~FR~E~~~ 218 (437)
T PRK05159 139 RSEVLRAFREFLYENGFTEIFTPKIVASGTEGGAELFPIDYFEKEAYLAQSPQLYKQMMVGAGFERVFEIGPVFRAEEHN 218 (437)
T ss_pred HHHHHHHHHHHHHHCCCEEEeCCcccccCCCCCcceEeEEecCCceEecCCHHHHHHHHHhcCCCcEEEEeceeeCCCCC
Confidence 99999999999999999999999999889999999999999999999999999999999999999999999999999998
Q ss_pred CCccccccccceeeeeccccHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhcCCCcccCCCCCCceeeHHHHHHHHHHc
Q 013865 331 THRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKDA 410 (435)
Q Consensus 331 t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~rit~~eai~lL~~~ 410 (435)
|+|||||||||||||+|.++|+|+|+++|+||.++++.+.+++..++..++..++ .+..||+||||.||+++|++.
T Consensus 219 t~rHl~EFt~lE~e~a~~~~~~~lm~~~e~lv~~i~~~~~~~~~~~i~~~~~~~~----~~~~~f~rit~~eA~~~l~~~ 294 (437)
T PRK05159 219 TSRHLNEYTSIDVEMGFIDDHEDVMDLLENLLRYMYEDVAENCEKELELLGIELP----VPETPIPRITYDEAIEILKSK 294 (437)
T ss_pred CcccchhhheeeeeeeecccHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhccCCC----cCCCCceEeEHHHHHHHHHHc
Confidence 8999999999999999997799999999999999999999988888877664332 134699999999999999999
Q ss_pred CCCCCCCCCCCcHHHHHHHHHhhc
Q 013865 411 GVEIDPLGDLNTESERKLGQLVLE 434 (435)
Q Consensus 411 g~~~~~~~dl~te~E~~L~~~vke 434 (435)
|.+++|++|+++++|+.|++++.+
T Consensus 295 ~~~~~~~~~~~~~~e~~l~~~~~~ 318 (437)
T PRK05159 295 GNEISWGDDLDTEGERLLGEYVKE 318 (437)
T ss_pred CCCCCCCCCCCcHHHHHHHHHHhh
Confidence 999999999999999999999865
No 9
>PLN02221 asparaginyl-tRNA synthetase
Probab=100.00 E-value=4.8e-70 Score=577.73 Aligned_cols=303 Identities=27% Similarity=0.394 Sum_probs=265.3
Q ss_pred CCCCCCEEEEEEEEeeeecCCC-ceEEEEEEeCC--eEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCccc
Q 013865 100 GSLKDQEVLIRGRVHTTRPVGN-KLAFVVVRERV--STVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEI 176 (435)
Q Consensus 100 ~~~~g~~V~v~GrV~~~R~~G~-kl~Fl~Lrd~~--~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~~~ 176 (435)
..+.|+.|+|+||||++|.+|+ +++|++|||++ +.||||+..+.. .....|+.||+|.|+|+|+.++. .
T Consensus 46 ~~~~g~~V~I~GWV~~iR~~Gk~~i~Fl~LRDgs~~g~iQvVv~~~~~-------~~~~~L~~ES~V~V~G~V~~~~~-~ 117 (572)
T PLN02221 46 AGLAGQKVRIGGWVKTGREQGKGTFAFLEVNDGSCPANLQVMVDSSLY-------DLSTLVATGTCVTVDGVLKVPPE-G 117 (572)
T ss_pred hhcCCCEEEEEEEEEehhhCCCceEEEEEEeCCcccccEEEEEcCchh-------hHHhcCCCceEEEEEEEEEeCCc-c
Confidence 5688999999999999999996 48999999999 799999975311 11236899999999999987654 3
Q ss_pred CCCceeEEEEEeEEEEeecC-C-CCCcccccccchHHHHHhhhhcCCCCCCCCccccccccccccccHHHHHHHHHHHHH
Q 013865 177 KGATQQVEVQIKKLYCVSRA-A-KTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQV 254 (435)
Q Consensus 177 ~~~t~~lEi~v~~i~vls~~-~-~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~etrl~~R~Ldlr~~~~~~i~~~rs~i 254 (435)
++++|++||++++|.|||+| . ++|++... .+.++++++|||++|++..+++||+||.|
T Consensus 118 ~~~~~~iEl~v~~i~vl~~a~~~~~Pi~~~~--------------------~~~e~lrr~~hLR~R~~~~~Ai~RiRS~i 177 (572)
T PLN02221 118 KGTKQKIELSVEKVIDVGTVDPTKYPLPKTK--------------------LTLEFLRDVLHLRSRTNSISAVARIRNAL 177 (572)
T ss_pred CCCCccEEEEEeEEEEEecCCCCCCCCCCCc--------------------CChHHHhhcchhhcCCHHHHHHHHHHHHH
Confidence 45678999999999999999 3 78886432 35788889999999999999999999999
Q ss_pred HHHHHHHhhcCCeEEeeCceeeccCCCCCcceeEe---------------------------------------------
Q 013865 255 GNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRL--------------------------------------------- 289 (435)
Q Consensus 255 ~~~~r~fl~~~gF~EV~TP~l~~~~~egga~~F~v--------------------------------------------- 289 (435)
+++||+||.++||+||+||+|++++||||++.|.|
T Consensus 178 ~~aiR~ff~~~gFiEI~TP~Lt~s~~EGg~e~F~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (572)
T PLN02221 178 AFATHSFFQEHSFLYIHTPIITTSDCEGAGEMFQVTTLINYTERLEQDLIDNPPPTEADVEAARLIVKERGEVVAQLKAA 257 (572)
T ss_pred HHHHHHHHHHCCCEEEeCCeeccccCCCCccceeeeecccccccccccccccCcccchhhhhhhhhhhhhcchhhhhhcc
Confidence 99999999999999999999999999999999886
Q ss_pred ---------------------------------------------ccCCCceeeccChHHHHhhhccCCCceeEEEecce
Q 013865 290 ---------------------------------------------DYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVF 324 (435)
Q Consensus 290 ---------------------------------------------~~~~~~~~L~~Spql~lq~~i~~g~~rVfeIgp~F 324 (435)
+|||+++||+||||||||+++ +|++|||+|||+|
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dyFg~~ayLtqS~QLy~e~~~-~~l~rVfeIgP~F 336 (572)
T PLN02221 258 KASKEEITAAVAELKIAKESLAHIEERSKLKPGLPKKDGKIDYSKDFFGRQAFLTVSGQLQVETYA-CALSSVYTFGPTF 336 (572)
T ss_pred ccchhhhhhhhhhhhhhhhhhhhhhhhhhcccCCcccccccccccccCCCCeeeccCHHHHHHHHH-HhcCCeEEEccce
Confidence 799999999999999999865 5799999999999
Q ss_pred ecCCCCCCccccccccceeeeeccccHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhcCCCcc---c--CCCCCCceee
Q 013865 325 RAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEP---L--KYKPKTLRLT 399 (435)
Q Consensus 325 R~E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~---~--~~~~p~~rit 399 (435)
|||+++|+||||||||||+||+|.+ |+|+|+++|+||+++++.+.++|.++|+.+...++... + .+..||+|||
T Consensus 337 RAE~s~T~RHL~EFtmlE~Emaf~d-~~dvm~l~E~lv~~i~~~l~~~~~~~l~~l~~~~~~~~~~~l~~~~~~pf~RIt 415 (572)
T PLN02221 337 RAENSHTSRHLAEFWMVEPEIAFAD-LEDDMNCAEAYVKYMCKWLLDKCFDDMELMAKNFDSGCIDRLRMVASTPFGRIT 415 (572)
T ss_pred ecCCCCCCcccccccceeeeeecCC-HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcCchhhhhhhhccCCCceEEE
Confidence 9999999999999999999999996 99999999999999999999999999988765543211 1 1346999999
Q ss_pred HHHHHHHHHHc---CC----CCCCCCCCCcHHHHHHHHHh
Q 013865 400 FEEGVQMLKDA---GV----EIDPLGDLNTESERKLGQLV 432 (435)
Q Consensus 400 ~~eai~lL~~~---g~----~~~~~~dl~te~E~~L~~~v 432 (435)
|.||+++|++. |. ++.|++||++++|++|++++
T Consensus 416 y~EAi~~L~~~~~~g~~~~~~~~~G~dl~~e~Er~L~~~~ 455 (572)
T PLN02221 416 YTEAIELLEEAVAKGKEFDNNVEWGIDLASEHERYLTEVL 455 (572)
T ss_pred HHHHHHHHHhhhhcCCCCCCCcchhhhhhHHHHHHHHHHh
Confidence 99999999984 54 34689999999999999985
No 10
>PRK03932 asnC asparaginyl-tRNA synthetase; Validated
Probab=100.00 E-value=1.1e-68 Score=559.31 Aligned_cols=309 Identities=27% Similarity=0.407 Sum_probs=274.9
Q ss_pred Eeccc-cCCCCCCEEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecC
Q 013865 94 VVGAL-NGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVP 172 (435)
Q Consensus 94 ~i~~l-~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~ 172 (435)
.++++ ...+.|++|+|+|||+++|.+| |++|++|||+++.+|+++..+. +.+++++++.|+.||+|.|+|++..+
T Consensus 5 ~~~~~~~~~~~~~~V~i~G~v~~~R~~g-~~~Fi~lrD~~g~iq~~~~~~~---~~~~~~~~~~l~~~s~v~v~G~v~~~ 80 (450)
T PRK03932 5 SIKDILKGKYVGQEVTVRGWVRTKRDSG-KIAFLQLRDGSCFKQLQVVKDN---GEEYFEEIKKLTTGSSVIVTGTVVES 80 (450)
T ss_pred EHHHhcccccCCCEEEEEEEEEEEEeCC-CeEEEEEECCCCcEEEEEEcCC---ChHHHHHHhcCCCCcEEEEEEEEEcC
Confidence 35555 4578899999999999999998 8999999999999999997643 46788889999999999999999875
Q ss_pred CcccCCCceeEEEEEeEEEEeecC-CCCCcccccccchHHHHHhhhhcCCCCCCCCccccccccccccccHHHHHHHHHH
Q 013865 173 DVEIKGATQQVEVQIKKLYCVSRA-AKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQ 251 (435)
Q Consensus 173 ~~~~~~~t~~lEi~v~~i~vls~~-~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~etrl~~R~Ldlr~~~~~~i~~~r 251 (435)
+. .++++||++++|.||++| .++|+..++ .+.++|+++||||||++.++++|++|
T Consensus 81 ~~----~~~~~el~~~~i~vl~~~~~~~p~~~~~--------------------~~~~~~~~~r~l~lR~~~~~~~l~~R 136 (450)
T PRK03932 81 PR----AGQGYELQATKIEVIGEDPEDYPIQKKR--------------------HSIEFLREIAHLRPRTNKFGAVMRIR 136 (450)
T ss_pred CC----CCCCEEEEEEEEEEccCCCCCCCCCccc--------------------cChHHHhhCceeeccCHHHHHHHHHH
Confidence 42 346899999999999999 889987543 24688999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCeEEeeCceeeccCCCCCcceeEe---------ccCCCceeeccChHHHHhhhccCCCceeEEEec
Q 013865 252 SQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRL---------DYKGQSACLAQSPQLHKQMSICGDFGRVFETGP 322 (435)
Q Consensus 252 s~i~~~~r~fl~~~gF~EV~TP~l~~~~~egga~~F~v---------~~~~~~~~L~~Spql~lq~~i~~g~~rVfeIgp 322 (435)
|.|++++|+||.++||+||+||+|+++++||++++|.| +|||.++||+||||||||++ ++|++|||+|||
T Consensus 137 s~i~~~iR~f~~~~gf~EV~TP~L~~~~~eg~~~~F~v~~~~~~~~~~~~~~~~~L~~Spql~lq~l-~~g~~rVf~i~~ 215 (450)
T PRK03932 137 NTLAQAIHEFFNENGFVWVDTPIITASDCEGAGELFRVTTLDLDFSKDFFGKEAYLTVSGQLYAEAY-AMALGKVYTFGP 215 (450)
T ss_pred HHHHHHHHHHHHHCCCEEecCCceeccCCCCCCCceEeecccccccccccCCCcccccCHHHHHHHH-HhccCCeEEeee
Confidence 99999999999999999999999999999999999999 89999999999999999975 579999999999
Q ss_pred ceecCCCCCCccccccccceeeeeccccHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhcCCCcccC-----CCCCCce
Q 013865 323 VFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLK-----YKPKTLR 397 (435)
Q Consensus 323 ~FR~E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~-----~~~p~~r 397 (435)
|||||+++|+|||||||||||||+|++ ++|+|+++|+||+++++.+.+++..+|+.++.+.+...++ ...||+|
T Consensus 216 ~FR~E~~~t~rHl~EFt~lE~e~~~~~-~~~~m~~~e~li~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~~r 294 (450)
T PRK03932 216 TFRAENSNTRRHLAEFWMIEPEMAFAD-LEDNMDLAEEMLKYVVKYVLENCPDDLEFLNRRVDKGDIERLENFIESPFPR 294 (450)
T ss_pred ccccCCCCCccccccccccceEEeccC-HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccccCchHHHHHHhhcCCCceE
Confidence 999999999999999999999999996 9999999999999999999999998998887655433221 2369999
Q ss_pred eeHHHHHHHHHHcCCC----CCCCCCCCcHHHHHHHH-Hh
Q 013865 398 LTFEEGVQMLKDAGVE----IDPLGDLNTESERKLGQ-LV 432 (435)
Q Consensus 398 it~~eai~lL~~~g~~----~~~~~dl~te~E~~L~~-~v 432 (435)
|||.||+++|++.|.+ +.|+.||++++|++|++ .+
T Consensus 295 ity~eA~~~l~~~~~~~~~~~~~g~~l~~~~e~~l~~~~~ 334 (450)
T PRK03932 295 ITYTEAIEILQKSGKKFEFPVEWGDDLGSEHERYLAEEHF 334 (450)
T ss_pred eEHHHHHHHHHHcCCCcCCCCCcccccChHHHHHHHHHhc
Confidence 9999999999998764 36889999999999998 44
No 11
>TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial. This model represents the lysyl-tRNA synthetases that are class II amino-acyl tRNA synthetases. It includes all eukaryotic and most bacterial examples of the enzyme, but not archaeal or spirochete forms.
Probab=100.00 E-value=3.5e-69 Score=567.62 Aligned_cols=302 Identities=24% Similarity=0.376 Sum_probs=256.3
Q ss_pred CCCCCCcccccccCcce-EEeccccC---CCCCCEEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHH
Q 013865 76 NDPQTGKWSEAVNGREW-TVVGALNG---SLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMV 151 (435)
Q Consensus 76 ~~~~p~~~~~~~~~~~~-~~i~~l~~---~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~ 151 (435)
.+||||+|.++++..++ ..+.++.. ...|++|+|+|||+++|.+| |++|++|||++++||+|++.+. ++.+++
T Consensus 21 ~~~yp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Grv~~~R~~g-k~~F~~l~D~~g~iQ~~~~~~~--~~~~~~ 97 (496)
T TIGR00499 21 NNPYLNKFERTHSSQEFQEEYADLSNEELEDKNIEVSIAGRIMARRSMG-KATFITLQDESGQIQLYVNKDD--LPEDFY 97 (496)
T ss_pred CCCCCCCCCCCcCHHHHHHHhhccCccchhcCCCEEEEEEEEEEEecCC-CeEEEEEEcCCccEEEEEECCc--CcHHHH
Confidence 38999999998776443 12222221 24488999999999999988 8999999999999999998643 456777
Q ss_pred HHHh-cCCCCcEEEEEEEEecCCcccCCCceeEEEEEeEEEEeecC-CCCCcccccccchHHHHHhhhhcCCCCCCCCcc
Q 013865 152 RFVR-SLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRA-AKTPITIEDASRSEAEIEKASKEGVQLPRVNQD 229 (435)
Q Consensus 152 k~~~-~l~~esiV~V~G~v~~~~~~~~~~t~~lEi~v~~i~vls~~-~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~e 229 (435)
++.. .|+.||+|.|+|++.+++ +|++||++++|.+||+| .+||....+ .++++
T Consensus 98 ~~~~~~l~~gd~V~v~G~~~~t~------~gelel~~~~i~ilsk~~~plP~k~~~-------------------~~d~e 152 (496)
T TIGR00499 98 EFDEYLLDLGDIIGVTGYPFKTK------TGELSVHVTELQILTKALRPLPDKFHG-------------------LTDQE 152 (496)
T ss_pred HHHHhcCCCCCEEEEEEEEEECC------CCcEEEEeeEEEEEecCCCCCCccccc-------------------cCChh
Confidence 7766 489999999999997643 47899999999999999 899976432 36889
Q ss_pred cccccccccccc-HHHHHHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCCCCCcceeEecc--CCCceeeccChHHHH
Q 013865 230 TRLNNRVIDIRT-LANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDY--KGQSACLAQSPQLHK 306 (435)
Q Consensus 230 trl~~R~Ldlr~-~~~~~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~--~~~~~~L~~Spql~l 306 (435)
+||++||||||+ +.++++|++||.|+++||+||.++||+||+||+|++..+++++.||.+.| |+.++||+|||||||
T Consensus 153 ~r~r~R~Ldl~~n~~~~~~~r~Rs~i~~~iR~fl~~~gF~EVeTP~L~~~~gga~a~pF~t~~~~~~~~~yLriSpELyl 232 (496)
T TIGR00499 153 TRYRQRYLDLIVNPDSRQTFLVRSKIIKAIRRFLDDRGFIEVETPMLQVIPGGANARPFITHHNALDMDLYLRIAPELYL 232 (496)
T ss_pred hhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHCcCEEEeCCeeecCCCCccceeEEeecccCCCceEEecCHHHHH
Confidence 999999999996 89999999999999999999999999999999998664333346899865 999999999999999
Q ss_pred hhhccCCCceeEEEecceecCCCCCCccccccccceeeeeccccHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhcCCC
Q 013865 307 QMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPF 386 (435)
Q Consensus 307 q~~i~~g~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~ 386 (435)
|++++||++||||||||||||+++ .|||||||||||||+|++ |+|+|+++|+||++++..+.+.+... ++.
T Consensus 233 KrlivgG~~rVfeIg~~FRnE~~~-~rH~pEFTmlE~y~a~~d-~~dlm~~~E~li~~i~~~l~~~~~~~-------~~~ 303 (496)
T TIGR00499 233 KRLIVGGFEKVYEIGRNFRNEGVD-TTHNPEFTMIEFYQAYAD-YEDLMDLTENLFKFLAQELLGTTKIT-------YGE 303 (496)
T ss_pred HHHHhCCCCceEEEecceecCCCC-CcccchhheeehhhhcCC-HHHHHHHHHHHHHHHHHHHhccccee-------cCc
Confidence 999999999999999999999984 699999999999999995 99999999999999999997766543 233
Q ss_pred cccCCCCCCceeeHHHHHHHHHH-cCCCC
Q 013865 387 EPLKYKPKTLRLTFEEGVQMLKD-AGVEI 414 (435)
Q Consensus 387 ~~~~~~~p~~rit~~eai~lL~~-~g~~~ 414 (435)
..+++..||+||||.||+++|.+ .|+++
T Consensus 304 ~~~~~~~pf~rit~~eai~~~~~~~g~~~ 332 (496)
T TIGR00499 304 LEIDFKKPFKRITMVEAIKKYDMETGIDF 332 (496)
T ss_pred eeccCCCCceEEEHHHHHHHHHHhcCCCc
Confidence 34567789999999999998854 67764
No 12
>TIGR00457 asnS asparaginyl-tRNA synthetase. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, asnS, represents asparaginyl-tRNA synthetases from the three domains of life. Some species lack this enzyme and charge tRNA(asn) by misacylation with Asp, followed by transamidation of Asp to Asn.
Probab=100.00 E-value=2.7e-67 Score=548.66 Aligned_cols=302 Identities=26% Similarity=0.410 Sum_probs=267.9
Q ss_pred CCCCCEEEEEEEEeeeecCCCceEEEEEEeCC--eEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCcccCC
Q 013865 101 SLKDQEVLIRGRVHTTRPVGNKLAFVVVRERV--STVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKG 178 (435)
Q Consensus 101 ~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~--~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~~~~~ 178 (435)
.+.|++|+|+|||+++|.+| |++|++|||++ +.||||++.+ .+.++++++..|+.||+|.|+|+|..++ +
T Consensus 13 ~~~g~~v~v~Gwv~~~R~~~-~~~F~~lrD~~~~g~iQ~v~~~~---~~~~~~~~~~~l~~gs~V~v~G~v~~~~----~ 84 (453)
T TIGR00457 13 KFVGDEVTVSGWVRTKRSSK-KIIFLELNDGSSLGPIQAVINGE---DNPYLFQLLKSLTTGSSVSVTGKVVESP----G 84 (453)
T ss_pred hcCCCEEEEEEEeEEEEcCC-CeEEEEEECCCCCccEEEEEeCC---cChHHHHHHHcCCCCcEEEEEEEEEcCC----C
Confidence 56799999999999999887 99999999999 9999999864 2457788889999999999999998743 2
Q ss_pred CceeEEEEEeEEEEeecCC--CCCcccccccchHHHHHhhhhcCCCCCCCCccccccccccccccHHHHHHHHHHHHHHH
Q 013865 179 ATQQVEVQIKKLYCVSRAA--KTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGN 256 (435)
Q Consensus 179 ~t~~lEi~v~~i~vls~~~--~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~etrl~~R~Ldlr~~~~~~i~~~rs~i~~ 256 (435)
.++++||.+++|.||++|. ++|++.++ .+.++|+++||||+|++..+++|++||.|++
T Consensus 85 ~~~~~El~~~~i~vl~~~~~~~~P~~~~~--------------------~~~~~~~~~r~l~lR~~~~~~~lr~Rs~i~~ 144 (453)
T TIGR00457 85 KGQPVELQVKKIEVVGEAEPDDYPLQKKE--------------------HSLEFLRDIAHLRLRTNTLGAVMRVRNALSQ 144 (453)
T ss_pred CCCCEEEEEeEEEEEecCCccCCCCCccc--------------------cChhhHhhCcceecCCHHHHHHHHHHHHHHH
Confidence 3478999999999999993 78887543 3467899999999999999999999999999
Q ss_pred HHHHHhhcCCeEEeeCceeeccCCCCCcceeEec---------cCCCceeeccChHHHHhhhccCCCceeEEEecceecC
Q 013865 257 IFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLD---------YKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAE 327 (435)
Q Consensus 257 ~~r~fl~~~gF~EV~TP~l~~~~~egga~~F~v~---------~~~~~~~L~~Spql~lq~~i~~g~~rVfeIgp~FR~E 327 (435)
++|+||.++||+||+||+|+++++|||+++|.|. |||.++||+||||||||++ ++|++|||+||||||||
T Consensus 145 ~~r~~~~~~gf~eV~TP~l~~~~~eg~~~~F~v~~~~~~~~~~~~~~~~yL~~Spql~lq~l-~~g~~rVf~i~~~FR~E 223 (453)
T TIGR00457 145 AIHRYFQENGFTWVSPPILTSNDCEGAGELFRVSTDGIDFSQDFFGKEAYLTVSGQLYLETY-ALALSKVYTFGPTFRAE 223 (453)
T ss_pred HHHHHHHHCCCEEecCCeEeecCCCCCCCceEecccccccchhccCCccccccCHHHHHHHH-hhcccCceEeeeccccC
Confidence 9999999999999999999999999999999987 9999999999999999976 68999999999999999
Q ss_pred CCCCCccccccccceeeeeccccHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhcCCCcccC-----CCCCCceeeHHH
Q 013865 328 DSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLK-----YKPKTLRLTFEE 402 (435)
Q Consensus 328 ~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~-----~~~p~~rit~~e 402 (435)
+++|+|||||||||||||+|++ |+|+|+++|+||+++++.+.+++..+++.++..++...+. ...||+||||.|
T Consensus 224 ~~~t~rHl~EFt~le~e~~~~~-~~dvm~~~E~lv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~rit~~e 302 (453)
T TIGR00457 224 KSNTSRHLSEFWMIEPEMAFAN-LNDLLQLAETLIKYIIKAVLENCSQELKFLEKNFDKDLIKRLENIINNKFARITYTD 302 (453)
T ss_pred CCCCCcCcchhccceeeeecCC-HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhccCCchHHHHHHHhcCCCCceeEHHH
Confidence 9988999999999999999996 9999999999999999999998988887766544322111 124899999999
Q ss_pred HHHHHHHcCC----CCCCCCCCCcHHHHHHHHHh
Q 013865 403 GVQMLKDAGV----EIDPLGDLNTESERKLGQLV 432 (435)
Q Consensus 403 ai~lL~~~g~----~~~~~~dl~te~E~~L~~~v 432 (435)
|+++|++.|. +..|++||++++|++|++.+
T Consensus 303 a~~~l~~~~~~~~~~~~~g~~l~~~~e~~L~~~~ 336 (453)
T TIGR00457 303 AIEILKESDKNFEYEDFWGDDLQTEHERFLAEEY 336 (453)
T ss_pred HHHHHHhcCCCCcCCCCCCCCCCcHHHHHHHHHh
Confidence 9999999864 34688999999999999875
No 13
>PTZ00417 lysine-tRNA ligase; Provisional
Probab=100.00 E-value=2.7e-67 Score=558.61 Aligned_cols=325 Identities=18% Similarity=0.261 Sum_probs=263.6
Q ss_pred cccccCCCCCCcccCChhhhhcc----CCCCCCcccccccCcce-EEecccc--CCCCCCEEEEEEEEeeeecCCCceEE
Q 013865 53 SIEEEGPLANNYGDVPLQELQSV----NDPQTGKWSEAVNGREW-TVVGALN--GSLKDQEVLIRGRVHTTRPVGNKLAF 125 (435)
Q Consensus 53 ~~~~~d~~~~~Yg~~~~~~~~~~----~~~~p~~~~~~~~~~~~-~~i~~l~--~~~~g~~V~v~GrV~~~R~~G~kl~F 125 (435)
..+++|.+++.|...|...++.+ .|||||+|.++++..++ ..+.++. ....++.|+|+|||+++|.+|+|++|
T Consensus 74 ~~~~~~~~~~~~~~~r~~k~~~l~~~g~~pyp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Grv~~~R~~G~k~~F 153 (585)
T PTZ00417 74 KEEEAEVDPRLYYENRSKFIQEQKAKGINPYPHKFERTITVPEFVEKYQDLASGEHLEDTILNVTGRIMRVSASGQKLRF 153 (585)
T ss_pred ccccccCChHHHHHHHHHHHHHHHhcCCCCCCCCCcCCcCHHHHHHHhhccCccccccCCeEEEEEEEEeeecCCCCCEE
Confidence 34667899999999998876654 39999999998776543 1223322 22345679999999999999988999
Q ss_pred EEEEeCCeEEEEEEeeCCCCCcHHHHH-HHhcCCCCcEEEEEEEEecCCcccCCCceeEEEEEeEEEEeecC-CCCCccc
Q 013865 126 VVVRERVSTVQCLATVKPDSVSKEMVR-FVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRA-AKTPITI 203 (435)
Q Consensus 126 l~Lrd~~~~iQvv~~~~~~~~s~~~~k-~~~~l~~esiV~V~G~v~~~~~~~~~~t~~lEi~v~~i~vls~~-~~lP~~~ 203 (435)
++|||++++||||++.+....+.+.+. +.+.|+.||+|.|+|.+.+ +.+|++||.+++|.+|++| .+||+..
T Consensus 154 ~~L~d~~g~iQv~~~~~~~~~~~~~~~~~~~~l~~Gd~V~V~G~~~~------t~~gel~i~~~~i~llsk~l~~lP~~~ 227 (585)
T PTZ00417 154 FDLVGDGAKIQVLANFAFHDHTKSNFAECYDKIRRGDIVGIVGFPGK------SKKGELSIFPKETIILSPCLHMLPMKY 227 (585)
T ss_pred EEEEeCCeeEEEEEECCccCCCHHHHHHHHhcCCCCCEEEEEeEEcC------CCCceEEEEEEEEEEEecCCCCCCccc
Confidence 999999999999998643222233333 3578999999999999764 3357999999999999999 8999752
Q ss_pred ccccchHHHHHhhhhcCCCCCCCCccccccccccccc-cHHHHHHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCCCC
Q 013865 204 EDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIR-TLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEG 282 (435)
Q Consensus 204 ~d~~~~~~~~~~~~~~~~~~~~~~~etrl~~R~Ldlr-~~~~~~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~eg 282 (435)
+..+.++|+++|||||| ++.++++|++||.|+++||+||.++||+||+||+|++...+.
T Consensus 228 --------------------g~~d~e~r~r~RyLdL~~n~~~~~ifr~RS~Ii~aiR~Ff~~rGFlEVeTPiL~~~~GGA 287 (585)
T PTZ00417 228 --------------------GLKDTEIRYRQRYLDLMINESTRSTFITRTKIINYLRNFLNDRGFIEVETPTMNLVAGGA 287 (585)
T ss_pred --------------------CCCCcccccccchhhhhcCHHHHHHHHHHHHHHHHHHHHHHHCCeEEEeCCeeeccCCcc
Confidence 34678999999999999 589999999999999999999999999999999999763222
Q ss_pred CcceeEe--ccCCCceeeccChHHHHhhhccCCCceeEEEecceecCCCCCCccccccccceeeeeccccHHHHHHHHHH
Q 013865 283 GSAVFRL--DYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDR 360 (435)
Q Consensus 283 ga~~F~v--~~~~~~~~L~~Spql~lq~~i~~g~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~ 360 (435)
++.||.+ ++++.++||++|||||+|++++||++||||||||||||++ +.||||||||||||++|+| |+|+|+++|+
T Consensus 288 ~a~PF~T~~n~~d~~lYLriSpEL~lKrLlvgG~~rVfeIgp~FRnE~~-~~rHnpEFTmlE~y~ay~d-y~dlM~l~E~ 365 (585)
T PTZ00417 288 NARPFITHHNDLDLDLYLRIATELPLKMLIVGGIDKVYEIGKVFRNEGI-DNTHNPEFTSCEFYWAYAD-FYDLIKWSED 365 (585)
T ss_pred cceeEEecccCCCcceEEeecHHHHHHHHHHhCCCCEEEEcccccCCCC-CCCccceeeeeeeeeecCC-HHHHHHHHHH
Confidence 3348987 6899999999999999999999999999999999999998 4699999999999999995 9999999999
Q ss_pred HHHHHHhhhhhhhHHHHHHhhhcCCCcccCCCCCCceeeHHHHHH
Q 013865 361 LFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQ 405 (435)
Q Consensus 361 li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~rit~~eai~ 405 (435)
||++++..+.+.+...+...+.......+++..||+|+||.||++
T Consensus 366 Li~~v~~~v~g~~~~~~~~~g~~~~~~~i~~~~pf~rit~~ea~~ 410 (585)
T PTZ00417 366 FFSQLVMHLFGTYKILYNKDGPEKDPIEIDFTPPYPKVSIVEELE 410 (585)
T ss_pred HHHHHHHHhcCcceeeecccccccccccccCCCCceeccHHHHHH
Confidence 999999988765433222111111112356778999999888876
No 14
>PRK12445 lysyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=3.8e-67 Score=552.48 Aligned_cols=306 Identities=20% Similarity=0.316 Sum_probs=253.8
Q ss_pred cccCChhhhhc---cCCCCCCcccccccCcce-EEeccccC---CCCCCEEEEEEEEeeeecCCCceEEEEEEeCCeEEE
Q 013865 64 YGDVPLQELQS---VNDPQTGKWSEAVNGREW-TVVGALNG---SLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQ 136 (435)
Q Consensus 64 Yg~~~~~~~~~---~~~~~p~~~~~~~~~~~~-~~i~~l~~---~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQ 136 (435)
|-..|+..++. .+.||||+|.++++...+ ..+.++.. ...|++|+|+|||+++|.+| |++|++|||++++||
T Consensus 18 ~~~~r~~k~~~l~~~g~py~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Grv~~~R~~G-k~~F~~lrD~~g~iQ 96 (505)
T PRK12445 18 ELRNRREKLAALRQQGVAFPNDFRRDHTSDQLHEEFDAKDNQELESLNIEVSVAGRMMTRRIMG-KASFVTLQDVGGRIQ 96 (505)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCcCccCHHHHHHHhhccCcchhhcCCCEEEEEEEEEEEecCC-CcEEEEEEeCCccEE
Confidence 44455544332 234999999998877543 12222221 24488999999999999999 889999999999999
Q ss_pred EEEeeCCCCCcHHHHH-HHhcCCCCcEEEEEEEEecCCcccCCCceeEEEEEeEEEEeecC-CCCCcccccccchHHHHH
Q 013865 137 CLATVKPDSVSKEMVR-FVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRA-AKTPITIEDASRSEAEIE 214 (435)
Q Consensus 137 vv~~~~~~~~s~~~~k-~~~~l~~esiV~V~G~v~~~~~~~~~~t~~lEi~v~~i~vls~~-~~lP~~~~d~~~~~~~~~ 214 (435)
||+..+. ++.+.++ ....|..||+|.|+|++.++. +|++||++++|.+||+| .+||....+
T Consensus 97 ~~~~~~~--~~~~~~~~~~~~l~~Gd~V~v~G~~~~t~------~gelel~~~~~~llsk~~~plP~~~~~--------- 159 (505)
T PRK12445 97 LYVARDS--LPEGVYNDQFKKWDLGDIIGARGTLFKTQ------TGELSIHCTELRLLTKALRPLPDKFHG--------- 159 (505)
T ss_pred EEEECCc--cchhhHHHHHhcCCCCCEEEEEEEEEecC------CCcEEEEEeEEEEEecCCCCCCccccc---------
Confidence 9998542 2333332 456799999999999998743 57899999999999999 999986433
Q ss_pred hhhhcCCCCCCCCcccccccccccccc-HHHHHHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCCCCCcc--eeEe--
Q 013865 215 KASKEGVQLPRVNQDTRLNNRVIDIRT-LANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSA--VFRL-- 289 (435)
Q Consensus 215 ~~~~~~~~~~~~~~etrl~~R~Ldlr~-~~~~~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~egga~--~F~v-- 289 (435)
..+.++|+++||||||+ +.++++|++||.|+++||+||.++||+||+||+|++. +|||. ||.+
T Consensus 160 ----------~~d~e~r~r~Ryldl~~n~~~r~~~r~Rs~i~~~iR~f~~~~gFiEVeTPiL~~~--~gGa~a~pF~t~~ 227 (505)
T PRK12445 160 ----------LQDQEVRYRQRYLDLIANDKSRQTFVVRSKILAAIRQFMVARGFMEVETPMMQVI--PGGASARPFITHH 227 (505)
T ss_pred ----------ccChhhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHCCCEEeeCCeeEec--CCCCcccceeccc
Confidence 36789999999999996 9999999999999999999999999999999999854 45554 8875
Q ss_pred ccCCCceeeccChHHHHhhhccCCCceeEEEecceecCCCCCCccccccccceeeeeccccHHHHHHHHHHHHHHHHhhh
Q 013865 290 DYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGL 369 (435)
Q Consensus 290 ~~~~~~~~L~~Spql~lq~~i~~g~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~ 369 (435)
+||+.++||+||||||||++++||++||||||||||||++ |.|||||||||||||+|++ |+|+|+++|+||++++..+
T Consensus 228 ~~~~~~~yL~~SpELylKrlivgG~~rVfeIg~~FRnE~~-~~rH~pEFTmlE~y~a~~d-~~d~m~l~E~li~~l~~~~ 305 (505)
T PRK12445 228 NALDLDMYLRIAPELYLKRLVVGGFERVFEINRNFRNEGI-SVRHNPEFTMMELYMAYAD-YHDLIELTESLFRTLAQEV 305 (505)
T ss_pred ccCCcceeeecCHHHHHHHHHhccCCcEEEEehhccCCCC-CCCcCcccceeeeeeecCC-HHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999999999999999997 9999999999999999995 9999999999999999888
Q ss_pred hhhhHHHHHHhhhcCCCcccCCCCCCceeeHHHHHHHHH
Q 013865 370 NNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLK 408 (435)
Q Consensus 370 ~~~~~~~l~~~~~~~~~~~~~~~~p~~rit~~eai~lL~ 408 (435)
.+.+... +....+++..||+||||.||++.+.
T Consensus 306 ~~~~~~~-------~~~~~i~~~~pf~rit~~eai~~~~ 337 (505)
T PRK12445 306 LGTTKVT-------YGEHVFDFGKPFEKLTMREAIKKYR 337 (505)
T ss_pred hccccee-------cCceeccCCCCceEEEHHHHHHHHh
Confidence 7654322 2333456778999999999998664
No 15
>PRK00484 lysS lysyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=8.5e-67 Score=549.34 Aligned_cols=300 Identities=24% Similarity=0.356 Sum_probs=250.6
Q ss_pred CCCCCCcccccccCcce----EEeccccCCCCCCEEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHH
Q 013865 76 NDPQTGKWSEAVNGREW----TVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMV 151 (435)
Q Consensus 76 ~~~~p~~~~~~~~~~~~----~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~ 151 (435)
.|||||+|.++++..+. ..+..-.....+++|+|+|||+++|.+| +++|++|||++++||||++.+. ++.+++
T Consensus 22 ~~~yp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~G~v~~~R~~g-~~~Fi~lrD~~g~iQ~v~~~~~--~~~~~~ 98 (491)
T PRK00484 22 IDPYPNKFERTHTAAELRAKYDDKEKEELEELEIEVSVAGRVMLKRVMG-KASFATLQDGSGRIQLYVSKDD--VGEEAL 98 (491)
T ss_pred CCCCCCCCcCccCHHHHHHHhccccchhhcccCcEEEEEEEEEEEecCC-ceEEEEEEcCCccEEEEEECCc--CCHHHH
Confidence 48999999998776432 2222101112347899999999999999 8999999999999999998642 456777
Q ss_pred HHHhcCCCCcEEEEEEEEecCCcccCCCceeEEEEEeEEEEeecC-CCCCcccccccchHHHHHhhhhcCCCCCCCCccc
Q 013865 152 RFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRA-AKTPITIEDASRSEAEIEKASKEGVQLPRVNQDT 230 (435)
Q Consensus 152 k~~~~l~~esiV~V~G~v~~~~~~~~~~t~~lEi~v~~i~vls~~-~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~et 230 (435)
+.+..|+.||+|.|+|+|..++ +|++||+++++.+||+| .+||+...+ ..+.++
T Consensus 99 ~~~~~l~~g~~v~v~G~v~~t~------~ge~el~~~~~~vls~~~~plP~~~~~-------------------~~~~~~ 153 (491)
T PRK00484 99 EAFKKLDLGDIIGVEGTLFKTK------TGELSVKATELTLLTKSLRPLPDKFHG-------------------LTDVET 153 (491)
T ss_pred HHHhcCCCCCEEEEEEEEEEcC------CCcEEEEEeEEEEEeccCCCCCccccc-------------------ccchhh
Confidence 7777899999999999998643 47899999999999999 899986432 357899
Q ss_pred cccccccccc-cHHHHHHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCCCCCcceeEe--ccCCCceeeccChHHHHh
Q 013865 231 RLNNRVIDIR-TLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRL--DYKGQSACLAQSPQLHKQ 307 (435)
Q Consensus 231 rl~~R~Ldlr-~~~~~~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~egga~~F~v--~~~~~~~~L~~Spql~lq 307 (435)
|+++|||||| ++.++++|++||.|+++||+||.++||+||+||+|+++.+++++.+|.+ +||+.++||+||||||||
T Consensus 154 r~r~R~lDl~~~~~~~~~~r~Rs~i~~~iR~f~~~~gF~EVeTPiL~~~~~Ga~a~pF~t~~~~~~~~~yL~~Spql~lk 233 (491)
T PRK00484 154 RYRQRYVDLIVNPESRETFRKRSKIISAIRRFLDNRGFLEVETPMLQPIAGGAAARPFITHHNALDIDLYLRIAPELYLK 233 (491)
T ss_pred hccceeeehhcCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCceeccCCCccceeeeeccccCCCceEeccCHHHHHH
Confidence 9999999998 5999999999999999999999999999999999986533333469975 789999999999999999
Q ss_pred hhccCCCceeEEEecceecCCCCCCccccccccceeeeeccccHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhcCCCc
Q 013865 308 MSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFE 387 (435)
Q Consensus 308 ~~i~~g~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~ 387 (435)
++++||++|||+||||||||+++ .|||||||||||||+|.+ |+|+|+++|+||+++++.+.+++. +. +...
T Consensus 234 ~l~v~g~~rVfei~~~FR~E~~~-~rH~pEFt~lE~e~a~~d-~~d~m~~~E~li~~i~~~~~~~~~--i~-----~~~~ 304 (491)
T PRK00484 234 RLIVGGFERVYEIGRNFRNEGID-TRHNPEFTMLEFYQAYAD-YNDMMDLTEELIRHLAQAVLGTTK--VT-----YQGT 304 (491)
T ss_pred HHHhccCCcEEEEecceecCCCC-CCcCCceEEEEEEEecCC-HHHHHHHHHHHHHHHHHHHhCCce--Ee-----cCCE
Confidence 99999999999999999999985 599999999999999995 999999999999999999876422 21 1222
Q ss_pred ccCCCCCCceeeHHHHHHHHHHcCCCC
Q 013865 388 PLKYKPKTLRLTFEEGVQMLKDAGVEI 414 (435)
Q Consensus 388 ~~~~~~p~~rit~~eai~lL~~~g~~~ 414 (435)
.+++..||+||||.||++.+ .|+++
T Consensus 305 ~~~~~~pf~rity~eai~~~--~g~~~ 329 (491)
T PRK00484 305 EIDFGPPFKRLTMVDAIKEY--TGVDF 329 (491)
T ss_pred eecCCCCceEEEHHHHHHHH--hCCCc
Confidence 35566799999999999864 35543
No 16
>PLN02603 asparaginyl-tRNA synthetase
Probab=100.00 E-value=1.9e-66 Score=550.30 Aligned_cols=300 Identities=23% Similarity=0.354 Sum_probs=261.6
Q ss_pred CCCCCEEEEEEEEeeeecCCCceEEEEEEeCCe--EEEEEEeeCCCCCcHHHHHHHh--cCCCCcEEEEEEEEecCCccc
Q 013865 101 SLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVS--TVQCLATVKPDSVSKEMVRFVR--SLSNESIVDVIGVVSVPDVEI 176 (435)
Q Consensus 101 ~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~--~iQvv~~~~~~~~s~~~~k~~~--~l~~esiV~V~G~v~~~~~~~ 176 (435)
.+.|++|+|+|||+++|.+| +++|++|||+++ .||||+..+. ..++.+. .|+.||+|.|+|+|+.++
T Consensus 104 ~~~g~~V~v~GwV~~iR~~g-~~~Fi~l~Dgs~~~~lQ~v~~~~~-----~~~~~l~~~~l~~gs~V~V~G~v~~~~--- 174 (565)
T PLN02603 104 ARVGKTLNVMGWVRTLRAQS-SVTFIEVNDGSCLSNMQCVMTPDA-----EGYDQVESGLITTGASVLVQGTVVSSQ--- 174 (565)
T ss_pred ccCCCEEEEEEEEEEEEeCC-CeEEEEEECCCCCEeEEEEEECcH-----HHHHHHhhcCCCCCCEEEEEEEEEecC---
Confidence 57799999999999999998 899999999885 6999997532 1123333 499999999999998754
Q ss_pred CCCceeEEEEEeEEEEeecC-CCCCcccccccchHHHHHhhhhcCCCCCCCCccccccccccccccHHHHHHHHHHHHHH
Q 013865 177 KGATQQVEVQIKKLYCVSRA-AKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVG 255 (435)
Q Consensus 177 ~~~t~~lEi~v~~i~vls~~-~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~etrl~~R~Ldlr~~~~~~i~~~rs~i~ 255 (435)
++.+.+||++++|.+|++| .++|++.++ .+.+.+..++|||+|++.++++||+||.|+
T Consensus 175 -~~~~~~EL~v~~i~vlg~a~~~~Pi~~~~--------------------~s~e~lr~~~hLr~Rt~~~~ai~RiRS~i~ 233 (565)
T PLN02603 175 -GGKQKVELKVSKIVVVGKSDPSYPIQKKR--------------------VSREFLRTKAHLRPRTNTFGAVARVRNALA 233 (565)
T ss_pred -CCCccEEEEEeEEEEEECCCCCCCCcccc--------------------cchhhhhhhhhhhhccHHHHHHHHHHHHHH
Confidence 3346799999999999999 899987544 235667789999999999999999999999
Q ss_pred HHHHHHhhcCCeEEeeCceeeccCCCCCcceeEe------------------------------ccCCCceeeccChHHH
Q 013865 256 NIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRL------------------------------DYKGQSACLAQSPQLH 305 (435)
Q Consensus 256 ~~~r~fl~~~gF~EV~TP~l~~~~~egga~~F~v------------------------------~~~~~~~~L~~Spql~ 305 (435)
+++|+||.++||+||+||+|++++||||++.|.| +|||+++||+||||||
T Consensus 234 ~air~ff~~~gF~eV~TPiLt~s~~EGA~e~F~Vttl~~~~~~~~~~~~~~lp~~~~~~~~~~~dyF~~~~~LtvS~QL~ 313 (565)
T PLN02603 234 YATHKFFQENGFVWVSSPIITASDCEGAGEQFCVTTLIPNSAENGGSLVDDIPKTKDGLIDWSQDFFGKPAFLTVSGQLN 313 (565)
T ss_pred HHHHHHHHHCCCEEEECCeecccCCCccccCceeeeccccccccccccccccccCcccccccchhhhCcceeeccCchHH
Confidence 9999999999999999999999999999998854 6899999999999999
Q ss_pred HhhhccCCCceeEEEecceecCCCCCCccccccccceeeeeccccHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhcCC
Q 013865 306 KQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYP 385 (435)
Q Consensus 306 lq~~i~~g~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~ 385 (435)
||++ ++||+|||+||||||||+|+|+|||+||||||+||+|++ ++|+|+++|++|+++++.+.++|..+|+.++...+
T Consensus 314 ~E~~-~~~l~rVy~igp~FRaE~s~T~RHL~EF~mlE~E~af~d-l~d~m~~~E~~l~~~~~~v~~~~~~el~~~~~~~~ 391 (565)
T PLN02603 314 GETY-ATALSDVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD-LNDDMACATAYLQYVVKYILENCKEDMEFFNTWIE 391 (565)
T ss_pred HHHH-HhcccceEEEecceeCCCCCCccccccceeeeeeeecCC-HHHHHHHHHHHHHHHHHHHHcccHhHHHhcCCccc
Confidence 9975 678999999999999999999999999999999999996 99999999999999999999999999988765443
Q ss_pred CcccC-----CCCCCceeeHHHHHHHHHHcC----CCCCCCCCCCcHHHHHHHHHh
Q 013865 386 FEPLK-----YKPKTLRLTFEEGVQMLKDAG----VEIDPLGDLNTESERKLGQLV 432 (435)
Q Consensus 386 ~~~~~-----~~~p~~rit~~eai~lL~~~g----~~~~~~~dl~te~E~~L~~~v 432 (435)
...++ ...||+||||.||+++|++.+ ..++|++||++++|++|++.+
T Consensus 392 ~~~~~~l~~~~~~~f~rity~EAi~iL~~~~~~~~~~~~~g~dl~~e~Er~L~~~~ 447 (565)
T PLN02603 392 KGIIDRLSDVVEKNFVQLSYTDAIELLLKAKKKFEFPVKWGLDLQSEHERYITEEA 447 (565)
T ss_pred ccHHHHHHHhcCCCCCCCCHHHHHHHHHHhccccCCCCCccccccHHHHHHHHHHh
Confidence 22111 235899999999999999874 357899999999999999876
No 17
>PTZ00425 asparagine-tRNA ligase; Provisional
Probab=100.00 E-value=2.9e-65 Score=540.57 Aligned_cols=305 Identities=21% Similarity=0.316 Sum_probs=260.4
Q ss_pred CCCCCEEEEEEEEeeeecCCC-ceEEEEEEeCCe--EEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCcc--
Q 013865 101 SLKDQEVLIRGRVHTTRPVGN-KLAFVVVRERVS--TVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVE-- 175 (435)
Q Consensus 101 ~~~g~~V~v~GrV~~~R~~G~-kl~Fl~Lrd~~~--~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~~-- 175 (435)
.+.|++|+|+|||+++|.+|+ +++|++|||+++ .||||+... ...+..+..|+.||+|.|+|+|...+..
T Consensus 78 ~~~g~~Vtl~GWv~~iR~~g~~~~~Fv~lrDgsg~~~iQiVv~~~-----~~~~~~l~~l~~gs~v~v~G~v~~~~~~~~ 152 (586)
T PTZ00425 78 KYIDQIITVCGWSKAVRKQGGGRFCFVNLNDGSCHLNLQIIVDQS-----IENYEKLLKCGVGCCFRFTGKLIISPVQNE 152 (586)
T ss_pred ccCCCEEEEEEEEeehhhcCCceEEEEEEECCCCCcceEEEECCc-----hHHHHHHhcCCCccEEEEEEEEEcCCcccc
Confidence 467999999999999999985 599999999997 699999643 1223455789999999999999864322
Q ss_pred -cCC-CceeEEEEE-----eEEEEeecC-C--CCCcccccccchHHHHHhhhhcCCCCCCCCccccccccccccccHHHH
Q 013865 176 -IKG-ATQQVEVQI-----KKLYCVSRA-A--KTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQ 245 (435)
Q Consensus 176 -~~~-~t~~lEi~v-----~~i~vls~~-~--~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~etrl~~R~Ldlr~~~~~ 245 (435)
..| .++.+||++ +++.||+.+ . ++|++.+. .+.|+++++||||+|++..+
T Consensus 153 n~~g~~~~~~El~~~~~~~~~~~ilg~~~d~~~yPi~~k~--------------------~~~e~lr~~rhL~lR~~~~~ 212 (586)
T PTZ00425 153 NKKGLLKENVELALKDNSIHNFEIYGENLDPQKYPLSKKN--------------------HGKEFLREVAHLRPRSYFIS 212 (586)
T ss_pred CcCCCCCccEEEEEecCCCceEEEEeccCCCCCCCCCCcc--------------------CChhhhhhccceeccCHHHH
Confidence 112 246799998 799999988 4 57765332 35788899999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCCCCCcceeEe------------------------------------
Q 013865 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRL------------------------------------ 289 (435)
Q Consensus 246 ~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~egga~~F~v------------------------------------ 289 (435)
++||+||.|..++|+||.++||+||+||+|++++||||++.|.|
T Consensus 213 avlRiRs~l~~a~r~ff~~~gF~eI~TPiit~s~~EGa~elF~V~t~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 292 (586)
T PTZ00425 213 SVIRIRNALAIATHLFFQSRGFLYIHTPLITTSDCEGGGEMFTVTTLLGEDADYRAIPRVNKKNKKGEKREDILNTCNAN 292 (586)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEeeCCeecccCCCCCcceEEeeecccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999999999999999999999987
Q ss_pred ---------------------------ccCCCceeeccChHHHHhhhccCCCceeEEEecceecCCCCCCccccccccce
Q 013865 290 ---------------------------DYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLD 342 (435)
Q Consensus 290 ---------------------------~~~~~~~~L~~Spql~lq~~i~~g~~rVfeIgp~FR~E~s~t~rHl~EFt~lE 342 (435)
+|||+++||+||||||||++ ++|++|||+||||||||+++|+|||+||||||
T Consensus 293 ~~~~~~~~~~~~~~~q~~~~~~~~~~~~yF~k~ayL~~S~QLylE~~-~~g~~rVf~i~p~FRaE~s~t~RHL~EFt~lE 371 (586)
T PTZ00425 293 NNNGNSSSSNAVSSPAYPDQYLIDYKKDFFSKQAFLTVSGQLSLENL-CSSMGDVYTFGPTFRAENSHTSRHLAEFWMIE 371 (586)
T ss_pred ccccccccccccccccccccccccccccccCcceEEEcCchHHHHHH-HhccCCEEEEeceEeCCCCCCCCCCcccceEE
Confidence 59999999999999999976 57899999999999999999999999999999
Q ss_pred eeeeccccHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhcCCCccc-----CCCCCCceeeHHHHHHHHHHcC----CC
Q 013865 343 VEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPL-----KYKPKTLRLTFEEGVQMLKDAG----VE 413 (435)
Q Consensus 343 ~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~-----~~~~p~~rit~~eai~lL~~~g----~~ 413 (435)
+||+|++ ++|+|+++|+||+++++.+.++|..+|..++.......+ .+..||+||||.||+++|++.| .+
T Consensus 372 ~E~af~d-~~d~m~~~E~li~~v~~~vl~~~~~~i~~~~~~~~~~l~~~l~~~~~~pf~rIty~EAi~iL~~~~~~~~~~ 450 (586)
T PTZ00425 372 PEIAFAD-LYDNMELAESYIKYCIGYVLNNNFDDIYYFEENVETGLISRLKNILDEDFAKITYTNVIDLLQPYSDSFEVP 450 (586)
T ss_pred EEEecCC-HHHHHHHHHHHHHHHHHHHhcccccccccccccccccHHHHHHHhcCCCCCcCCHHHHHHHHHHhHHhcCCC
Confidence 9999996 999999999999999999998888887665432211111 1235899999999999998864 46
Q ss_pred CCCCCCCCcHHHHHHHHHh
Q 013865 414 IDPLGDLNTESERKLGQLV 432 (435)
Q Consensus 414 ~~~~~dl~te~E~~L~~~v 432 (435)
++|++||++++|++|++.+
T Consensus 451 ~~~G~dL~~e~Er~L~~~~ 469 (586)
T PTZ00425 451 VKWGMDLQSEHERFVAEQI 469 (586)
T ss_pred CCcccccchHHHHHHHHHh
Confidence 7899999999999999985
No 18
>PLN02532 asparagine-tRNA synthetase
Probab=100.00 E-value=3.3e-65 Score=542.56 Aligned_cols=284 Identities=19% Similarity=0.312 Sum_probs=246.8
Q ss_pred ecCCCceEEEEEEeCCeE--EEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCcccCCCceeEEEEEeEEEEee
Q 013865 117 RPVGNKLAFVVVRERVST--VQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVS 194 (435)
Q Consensus 117 R~~G~kl~Fl~Lrd~~~~--iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~~~~~~t~~lEi~v~~i~vls 194 (435)
|.+| +++||+|||+++. ||||+..... . ....|+.|++|.|+|+|+....+ ..+|.+||.+++|.||+
T Consensus 130 r~~g-~i~FI~LrDGSg~~~lQvVv~~~~~--~-----~~~~L~~Es~V~V~G~V~~~~~~--~~~g~iEl~v~~i~VLg 199 (633)
T PLN02532 130 PPPP-SVAYLLISDGSCVASLQVVVDSALA--P-----LTQLMATGTCILAEGVLKLPLPA--QGKHVIELEVEKILHIG 199 (633)
T ss_pred ccCC-CcEEEEEECCCCccceEEEEeCCcc--c-----HhhcCCCceEEEEEEEEEecCCC--CCCCcEEEEeeEEEEEe
Confidence 6777 8999999999987 9999975421 1 12689999999999999875322 34578999999999999
Q ss_pred cC--CCCCcccccccchHHHHHhhhhcCCCCCCCCccccccccccccccHHHHHHHHHHHHHHHHHHHHhhcCCeEEeeC
Q 013865 195 RA--AKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHT 272 (435)
Q Consensus 195 ~~--~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~etrl~~R~Ldlr~~~~~~i~~~rs~i~~~~r~fl~~~gF~EV~T 272 (435)
++ .++|++.+. .+.|+++++||||||++..+++||+||.|++++|+||.++||+||+|
T Consensus 200 ~a~~~p~Pi~~k~--------------------~~~E~LR~~RhLdLRt~~~~ailRiRS~i~~aiR~ff~~~GFiEV~T 259 (633)
T PLN02532 200 TVDPEKYPLSKKR--------------------LPLDMLRDFSHFRPRTTTVASVTRVRSALTHATHTFFQDHGFLYVQV 259 (633)
T ss_pred cCCCCCCcccccc--------------------CCHHHHhhCcceecCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEeeC
Confidence 97 478876432 35678889999999999999999999999999999999999999999
Q ss_pred ceeeccCCCCCcce------------------------------------------------------------------
Q 013865 273 PKLIAGSSEGGSAV------------------------------------------------------------------ 286 (435)
Q Consensus 273 P~l~~~~~egga~~------------------------------------------------------------------ 286 (435)
|+|++++||||++.
T Consensus 260 PiLT~s~~EGa~elF~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (633)
T PLN02532 260 PIITTTDATGFGEMFRVTTLLGKSDDKEEKKPVHETEGISLEAVKAAIKEKTNLVEELKRSESNREALVAAEQDLRKTNQ 339 (633)
T ss_pred CeecccCCCccccccceeccccccccccccccccccccccchhhhhhhhccccccccccccccccccccccccccccccc
Confidence 99999999999976
Q ss_pred -----------------------eEeccCCCceeeccChHHHHhhhccCCCceeEEEecceecCCCCCCcccccccccee
Q 013865 287 -----------------------FRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDV 343 (435)
Q Consensus 287 -----------------------F~v~~~~~~~~L~~Spql~lq~~i~~g~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~ 343 (435)
|.++|||+++||+||||||||+++ +||+|||+|||+||||+++|+|||+||||||+
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~f~~dyFg~~ayLtqS~QLylE~~~-~gl~rVYeIgP~FRAE~s~T~RHL~EFtmlE~ 418 (633)
T PLN02532 340 LASQLEAKEKLKTGTSVKADKLSFSKDFFSRPTYLTVSGRLHLESYA-CALGNVYTFGPRFRADRIDSARHLAEMWMVEV 418 (633)
T ss_pred ccccccccccccccccccccccccccccCCCCeeeccCHHHHHHHHH-HhcCceEEEccceecCCCCCCcccccccceee
Confidence 566799999999999999999865 58999999999999999999999999999999
Q ss_pred eeeccccHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhcCCCcc-----cCCCCCCceeeHHHHHHHHHHcC-----CC
Q 013865 344 EMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEP-----LKYKPKTLRLTFEEGVQMLKDAG-----VE 413 (435)
Q Consensus 344 e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~-----~~~~~p~~rit~~eai~lL~~~g-----~~ 413 (435)
||+|++ |+|+|+++|+||+++++.+.++|..+|+.++..+.... ..+..||+||||.||+++|++.+ .+
T Consensus 419 Emaf~d-~~dvM~l~E~lI~~v~k~v~~~~~~el~~l~~~~~~~~~~~le~~~~~pf~RIty~EAi~iL~~~~~~~~e~~ 497 (633)
T PLN02532 419 EMAFSE-LEDAMNCAEDYFKFLCKWVLENCSEDMKFVSKRIDKTISTRLEAIISSSLQRISYTEAVDLLKQATDKKFETK 497 (633)
T ss_pred eehhcC-HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccCCcchhhhhhcccCCCceEEEHHHHHHHHHHhcCCCcccc
Confidence 999996 99999999999999999999999999988765443211 12446999999999999998864 33
Q ss_pred CCCCCCCCcHHHHHHHHHh
Q 013865 414 IDPLGDLNTESERKLGQLV 432 (435)
Q Consensus 414 ~~~~~dl~te~E~~L~~~v 432 (435)
++|++||++++|++|++.+
T Consensus 498 ~~~g~dL~~e~Er~L~~~~ 516 (633)
T PLN02532 498 PEWGIALTTEHLSYLADEI 516 (633)
T ss_pred cccCCccChHHHHHHHHHH
Confidence 6799999999999999873
No 19
>PTZ00385 lysyl-tRNA synthetase; Provisional
Probab=100.00 E-value=3.2e-64 Score=537.04 Aligned_cols=322 Identities=21% Similarity=0.291 Sum_probs=256.2
Q ss_pred CcccccccCcce-EEeccc--cCCCCCCEEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHH-hc
Q 013865 81 GKWSEAVNGREW-TVVGAL--NGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFV-RS 156 (435)
Q Consensus 81 ~~~~~~~~~~~~-~~i~~l--~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~-~~ 156 (435)
|+|.++++..++ ..+.++ +....++.|+|+|||+++|.+| |++|++|||+++.||||+..+.. ++++++++. ..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~vaGrV~~~R~~G-k~~F~~LrD~~G~IQvv~~~~~~-~~~~~~~~~~~~ 158 (659)
T PTZ00385 81 SSFRGITPISEVRERYGYLASGDRAAQATVRVAGRVTSVRDIG-KIIFVTIRSNGNELQVVGQVGEH-FTREDLKKLKVS 158 (659)
T ss_pred ccCcccccHHHHHHHhhccccccccCCCEEEEEEEEEeeeccC-CeEEEEEEECCceEEEEEECCcc-CCHHHHHHHHhC
Confidence 466666555332 122332 2223366799999999999999 79999999999999999986431 356666665 57
Q ss_pred CCCCcEEEEEEEEecCCcccCCCceeEEEEEeEEEEeecC--CCCCcccccccchHHHHHhhhhcCCCCCCCCccccccc
Q 013865 157 LSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRA--AKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNN 234 (435)
Q Consensus 157 l~~esiV~V~G~v~~~~~~~~~~t~~lEi~v~~i~vls~~--~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~etrl~~ 234 (435)
|+.||+|.|+|+|.+. .+|++||++++|.+||++ ..+|+.... ....+..+.++||+|
T Consensus 159 l~~gdiV~V~G~v~~t------~~GeleI~~~~i~lLska~~~~~~~~p~~--------------~k~~~~~d~e~R~r~ 218 (659)
T PTZ00385 159 LRVGDIIGADGVPCRM------QRGELSVAASRMLILSPYVCTDQVVCPNL--------------RGFTVLQDNDVKYRY 218 (659)
T ss_pred CCCCCEEEEEEEEEec------CCceEEEEeeEEEEechhhhccccCCCCC--------------ccccccCChhhhccc
Confidence 9999999999999853 358999999999999995 233221100 002345789999999
Q ss_pred cccccc-cHHHHHHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCCCCCcceeEe--ccCCCceeeccChHHHHhhhcc
Q 013865 235 RVIDIR-TLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRL--DYKGQSACLAQSPQLHKQMSIC 311 (435)
Q Consensus 235 R~Ldlr-~~~~~~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~egga~~F~v--~~~~~~~~L~~Spql~lq~~i~ 311 (435)
|||||| ++.++++|++||.|+++||+||.++||+||+||+|+++++++|+.+|.+ ++|+.++||+||||||||+|++
T Consensus 219 RyLDL~~n~~~~~ifr~Rs~I~~aiR~ff~~~gFlEVeTPiL~~~~~ga~a~pF~t~~n~~~~~~yL~~SPELylKrLiv 298 (659)
T PTZ00385 219 RFTDMMTNPCVIETIKKRHVMLQALRDYFNERNFVEVETPVLHTVASGANAKSFVTHHNANAMDLFLRVAPELHLKQCIV 298 (659)
T ss_pred ceeeeecCHHHHHHHHHHHHHHHHHHHHHHHCCCEEeeCCEeeccCCCCCccceEeecccCCCCEEecCChHHHHHHHhh
Confidence 999997 5889999999999999999999999999999999998888889999998 4589999999999999999999
Q ss_pred CCCceeEEEecceecCCCCCCccccccccceeeeeccccHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhc--CCCccc
Q 013865 312 GDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQ--YPFEPL 389 (435)
Q Consensus 312 ~g~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~--~~~~~~ 389 (435)
||++||||||||||||++ +.||||||||||||++|++ |+|+|+++|+||++++..+.+.....+ ...+ .....+
T Consensus 299 gG~erVyeIg~~FRnE~~-~~rH~pEFTmlE~y~a~~d-~~d~m~l~E~li~~~~~~v~g~~~~~~--~~~~~~g~~~~i 374 (659)
T PTZ00385 299 GGMERIYEIGKVFRNEDA-DRSHNPEFTSCEFYAAYHT-YEDLMPMTEDIFRQLAMRVNGTTVVQI--YPENAHGNPVTV 374 (659)
T ss_pred cccCCEEEEeceecCCCC-CCCccccccceeeeeecCC-HHHHHHHHHHHHHHHHHHhcCCeeEEe--eccccCCCcccc
Confidence 999999999999999998 5899999999999999995 999999999999999998876432111 0000 000135
Q ss_pred CCCCCCceeeHHHHHHHHHHcCCCCCCCCCCCcHHHHHHHH
Q 013865 390 KYKPKTLRLTFEEGVQMLKDAGVEIDPLGDLNTESERKLGQ 430 (435)
Q Consensus 390 ~~~~p~~rit~~eai~lL~~~g~~~~~~~dl~te~E~~L~~ 430 (435)
++..||+||||.+++. +..|+++++++||++++|..++.
T Consensus 375 ~~~~Pf~Rit~~d~~~--e~~G~d~~~~~dl~~~~e~~~~~ 413 (659)
T PTZ00385 375 DLGKPFRRVSVYDEIQ--RMSGVEFPPPNELNTPKGIAYMS 413 (659)
T ss_pred cCCCCceEEeHHHHHH--HHhCCCCCccccCCCHHHHHHHH
Confidence 6778999999766664 45699888888999988875543
No 20
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.1e-63 Score=563.93 Aligned_cols=300 Identities=20% Similarity=0.251 Sum_probs=251.0
Q ss_pred CCCCCCcccccccCcceEEeccccCCCCCCEEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHh
Q 013865 76 NDPQTGKWSEAVNGREWTVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVR 155 (435)
Q Consensus 76 ~~~~p~~~~~~~~~~~~~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~ 155 (435)
.|||||+|+.+++ ++++.+...|++|+|+|||+++|.+| |++|++|||++++||||++.+.. .+..+..|..
T Consensus 629 ~~pyp~~~~~~~~------~~~~~~~~~~~~V~v~Grv~~~R~~G-~~~F~~lrD~~g~iQ~v~~~~~~-~~~~~~~~~~ 700 (1094)
T PRK02983 629 VDPYPVGVPPTHT------VAEALDAPTGEEVSVSGRVLRIRDYG-GVLFADLRDWSGELQVLLDASRL-EQGSLADFRA 700 (1094)
T ss_pred CCCCCCCCcCccC------HHHHHHhcCCCEEEEEEEEEEEeeCC-CeEEEEEEeCCeeEEEEEECCcc-chhhHHHHHh
Confidence 3999999998755 44454457799999999999999999 89999999999999999986532 1234555667
Q ss_pred cCCCCcEEEEEEEEecCCcccCCCceeEEEEEeEEEEeecC-CCCCcccccccchHHHHHhhhhcCCCCCCCCccccccc
Q 013865 156 SLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRA-AKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNN 234 (435)
Q Consensus 156 ~l~~esiV~V~G~v~~~~~~~~~~t~~lEi~v~~i~vls~~-~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~etrl~~ 234 (435)
.|+.||+|.|+|++.+++ +|++||++++|.++++| .+||.... +..++++|+++
T Consensus 701 ~l~~gd~V~v~G~v~~t~------~ge~ei~~~~i~ll~k~~~plP~k~~-------------------~~~d~e~R~r~ 755 (1094)
T PRK02983 701 AVDLGDLVEVTGTMGTSR------NGTLSLLVTSWRLAGKCLRPLPDKWK-------------------GLTDPEARVRQ 755 (1094)
T ss_pred cCCCCCEEEEEEEEEEcC------CCCEEEEEeEEEEEeccCcCCCCccc-------------------cCCChhhcchh
Confidence 899999999999998743 47899999999999999 89997532 34788999999
Q ss_pred ccccccc-HHHHHHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCCCCCcceeEe--ccCCCceeeccChHHHHhhhcc
Q 013865 235 RVIDIRT-LANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRL--DYKGQSACLAQSPQLHKQMSIC 311 (435)
Q Consensus 235 R~Ldlr~-~~~~~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~egga~~F~v--~~~~~~~~L~~Spql~lq~~i~ 311 (435)
||||||+ +.++++|++||.|+++||+||.++||+||+||+|++..++++++||.+ +|||.++||+||||||||++++
T Consensus 756 R~lDL~~n~~~~~~~r~Rs~i~~~iR~fl~~~gFlEVeTPiL~~~~gGa~a~pF~t~~~~~~~~~yLriSPELylKrLiv 835 (1094)
T PRK02983 756 RYLDLAVNPEARDLLRARSAVVRAVRETLVARGFLEVETPILQQVHGGANARPFVTHINAYDMDLYLRIAPELYLKRLCV 835 (1094)
T ss_pred hhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCCEeeccCCCcccceeEeeecCCCccchhhcChHHHHHHHHh
Confidence 9999986 899999999999999999999999999999999996655445678954 7999999999999999999999
Q ss_pred CCCceeEEEecceecCCCCCCccccccccceeeeeccccHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhcCCCcccCC
Q 013865 312 GDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKY 391 (435)
Q Consensus 312 ~g~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~ 391 (435)
||++||||||||||||+++ .||||||||||+||+|.| |+|+|+++|+||+++++.+.+..... .-+.......+++
T Consensus 836 gG~erVFEIg~~FRnE~~~-~rHnpEFTmLE~y~a~~d-y~d~m~l~E~li~~i~~~v~~~~~~~--~~~~~~~~~~i~~ 911 (1094)
T PRK02983 836 GGVERVFELGRNFRNEGVD-ATHNPEFTLLEAYQAHAD-YDTMRDLTRELIQNAAQAAHGAPVVM--RPDGDGVLEPVDI 911 (1094)
T ss_pred cccCceEEEcceecCCCCC-CCccccccchhhhhhcCC-HHHHHHHHHHHHHHHHHHHhCCcEEe--eCCcccccccccc
Confidence 9999999999999999984 699999999999999985 99999999999999999886542110 0010111223567
Q ss_pred CCCCceeeHHHHHHHHHHcCCCC
Q 013865 392 KPKTLRLTFEEGVQMLKDAGVEI 414 (435)
Q Consensus 392 ~~p~~rit~~eai~lL~~~g~~~ 414 (435)
..||+||||.||++ +..|+++
T Consensus 912 ~~pf~rit~~eai~--~~~g~~~ 932 (1094)
T PRK02983 912 SGPWPVVTVHDAVS--EALGEEI 932 (1094)
T ss_pred CCCceEEEHHHHHH--HHhCCCC
Confidence 78999999999997 3445443
No 21
>PLN02903 aminoacyl-tRNA ligase
Probab=100.00 E-value=3.1e-62 Score=521.98 Aligned_cols=278 Identities=28% Similarity=0.407 Sum_probs=240.6
Q ss_pred eEEeccccCCCCCCEEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEec
Q 013865 92 WTVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSV 171 (435)
Q Consensus 92 ~~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~ 171 (435)
.+.|++|...+.|++|+|+|||+++|.+| +++|++|||+++.+|||++.+. +.++++++..|+.||+|.|+|+|..
T Consensus 60 t~~cg~l~~~~~gk~V~l~GWV~~~R~~G-~l~FidLRD~~G~iQvV~~~~~---~~~~~~~~~~L~~esvV~V~G~V~~ 135 (652)
T PLN02903 60 SHLCGALSVNDVGSRVTLCGWVDLHRDMG-GLTFLDVRDHTGIVQVVTLPDE---FPEAHRTANRLRNEYVVAVEGTVRS 135 (652)
T ss_pred CCchhhcchhhCCCEEEEEEEEEEEecCC-CcEEEEEEcCCccEEEEEeCCc---cHHHHHHHhcCCCCCEEEEEEEEEe
Confidence 36789999999999999999999999999 8999999999999999997542 3567888899999999999999986
Q ss_pred CC-ccc--CCCceeEEEEEeEEEEeecC-CCCCcccccccchHHHHHhhhhcCCCCCCCCccccccccccccccHHHHHH
Q 013865 172 PD-VEI--KGATQQVEVQIKKLYCVSRA-AKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGI 247 (435)
Q Consensus 172 ~~-~~~--~~~t~~lEi~v~~i~vls~~-~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~etrl~~R~Ldlr~~~~~~i 247 (435)
++ .++ +..+|++||.+++|+||++| .+||+.+.+... ....++.++|++|||||||++.++++
T Consensus 136 r~~~~~n~~~~tGeiEl~~~~i~VL~~a~~~lPf~i~~~~~-------------~~~~~~ee~Rl~~RyLDLR~~~~q~~ 202 (652)
T PLN02903 136 RPQESPNKKMKTGSVEVVAESVDILNVVTKSLPFLVTTADE-------------QKDSIKEEVRLRYRVLDLRRPQMNAN 202 (652)
T ss_pred CCCcCcCCCCCCCCEEEEEeEEEEEecCCCCCCcccccccc-------------ccccCChhhhhccceeecCCHHHHHH
Confidence 42 222 33458899999999999999 889988764211 01126789999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhc-CCeEEeeCceeeccCCCCCcceeEeccC--CCceeeccChHHHHhhhccCCCceeEEEecce
Q 013865 248 FRIQSQVGNIFRQFLLS-ENFVEIHTPKLIAGSSEGGSAVFRLDYK--GQSACLAQSPQLHKQMSICGDFGRVFETGPVF 324 (435)
Q Consensus 248 ~~~rs~i~~~~r~fl~~-~gF~EV~TP~l~~~~~egga~~F~v~~~--~~~~~L~~Spql~lq~~i~~g~~rVfeIgp~F 324 (435)
|++||.|++++|+||.+ +||+||+||+|+.+++||+.+.|...++ +..+||+||||||||++|++|++|||+|||||
T Consensus 203 lr~Rs~i~~~iR~fl~~~~gFiEVeTPiL~~st~eGardf~v~~~~~~g~~y~L~qSPQlykQ~Lm~~G~~RvFqIa~~F 282 (652)
T PLN02903 203 LRLRHRVVKLIRRYLEDVHGFVEIETPILSRSTPEGARDYLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDRYYQIARCF 282 (652)
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEECCeeccCCCCCCcccEEeeecCCCcccccCCCHHHHHHHHHhccCCcEEEEehhh
Confidence 99999999999999997 9999999999999889886654444443 56778999999999999999999999999999
Q ss_pred ecCCCCCCccccccccceeeeeccccHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhcCCCcccCCCCCCceeeHHHHH
Q 013865 325 RAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGV 404 (435)
Q Consensus 325 R~E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~rit~~eai 404 (435)
|||++++.|| ||||||||||+|++ |+|+|+++|+||+++++.+.+ +++..||+||||.||+
T Consensus 283 R~E~~~t~Rh-pEFTqLE~E~sf~d-~~dvm~~~E~li~~v~~~~~~-----------------~~~~~PF~rity~eA~ 343 (652)
T PLN02903 283 RDEDLRADRQ-PEFTQLDMELAFTP-LEDMLKLNEDLIRQVFKEIKG-----------------VQLPNPFPRLTYAEAM 343 (652)
T ss_pred ccCCCCCCcc-cceeeeeeeecCCC-HHHHHHHHHHHHHHHHHHHhC-----------------CCCCCCceEEEHHHHH
Confidence 9999999888 99999999999996 999999999999999987652 1223599999999999
Q ss_pred H
Q 013865 405 Q 405 (435)
Q Consensus 405 ~ 405 (435)
+
T Consensus 344 ~ 344 (652)
T PLN02903 344 S 344 (652)
T ss_pred H
Confidence 7
No 22
>TIGR00459 aspS_bact aspartyl-tRNA synthetase, bacterial type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_bact, represents aspartyl-tRNA synthetases from the Bacteria and from mitochondria. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). This model generates very low scores for the archaeal type of aspS and for asnS; scores between the trusted and noise cutoffs represent fragmentary sequences.
Probab=100.00 E-value=2.1e-61 Score=513.47 Aligned_cols=270 Identities=27% Similarity=0.454 Sum_probs=235.3
Q ss_pred EEeccccCCCCCCEEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecC
Q 013865 93 TVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVP 172 (435)
Q Consensus 93 ~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~ 172 (435)
+.|+++...+.|++|+|+|||+++|.+| +++|++|||+++.||||++.+ .++++++..|+.||+|.|+|+|...
T Consensus 4 ~~~~~l~~~~~g~~V~l~GwV~~~R~~G-kl~Fi~LrD~sg~iQvv~~~~-----~~~~~~~~~L~~esvV~V~G~v~~r 77 (583)
T TIGR00459 4 HYCGQLRTEHLGQTVTLAGWVNRRRDLG-GLIFIDLRDRSGIVQVVCDPD-----ADALKLAKGLRNEDVVQVKGKVSAR 77 (583)
T ss_pred eeHhhcchhhCCCEEEEEEEEEEEEcCC-CcEEEEEEeCCccEEEEEeCC-----HHHHHHHhcCCCCCEEEEEEEEEeC
Confidence 4677888788999999999999999999 799999999999999999753 4567788899999999999999853
Q ss_pred C-cccC--CCceeEEEEEeEEEEeecCCCCCcccccccchHHHHHhhhhcCCCCCCCCccccccccccccccHHHHHHHH
Q 013865 173 D-VEIK--GATQQVEVQIKKLYCVSRAAKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFR 249 (435)
Q Consensus 173 ~-~~~~--~~t~~lEi~v~~i~vls~~~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~etrl~~R~Ldlr~~~~~~i~~ 249 (435)
+ .++. .++|++||.+++|.+|++|..+|+.+.+ ..++.++|+++||||||++.++++|+
T Consensus 78 ~~~~~n~~~~tg~iEl~~~~i~iL~~a~~~P~~~~~------------------~~~~~~~Rl~~RyLDLR~~~~~~~lr 139 (583)
T TIGR00459 78 PEGNINRNLDTGEIEILAESITLLNKSKTPPLIIEK------------------TDAEEEVRLKYRYLDLRRPEMQQRLK 139 (583)
T ss_pred CccccCccCCCCcEEEEEeEEEEeecCCCCCCcccc------------------cccchhhhcccceEEcCCHHHHHHHH
Confidence 2 2222 4568999999999999999667876542 12567999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCeEEeeCceeeccCCCCCcceeEecc--CCCce-eeccChHHHHhhhccCCCceeEEEecceec
Q 013865 250 IQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDY--KGQSA-CLAQSPQLHKQMSICGDFGRVFETGPVFRA 326 (435)
Q Consensus 250 ~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~--~~~~~-~L~~Spql~lq~~i~~g~~rVfeIgp~FR~ 326 (435)
+||.|++++|+||.++||+||+||+|+++++||+ .+|.+.+ ++..+ +|+||||||||+++++|++|||+|||||||
T Consensus 140 ~Rs~i~~~iR~ff~~~gFiEVeTP~L~~s~~eGa-r~f~vp~~~~~~~~y~L~qSpQlykq~l~v~G~ervfqI~~~FR~ 218 (583)
T TIGR00459 140 LRHKVTKAVRNFLDQQGFLEIETPMLTKSTPEGA-RDYLVPSRVHKGEFYALPQSPQLFKQLLMVSGVDRYYQIARCFRD 218 (583)
T ss_pred HHHHHHHHHHHHHHHCCCEEEECCeeccCCCCCC-cceeeeeecCCCceeecCCCHHHHHHHHHhcccCcEEEEcceeeC
Confidence 9999999999999999999999999998888875 4576654 45554 599999999999999999999999999999
Q ss_pred CCCCCCccccccccceeeeeccccHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhcCCCcccCCCCCCceeeHHHHHHH
Q 013865 327 EDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQM 406 (435)
Q Consensus 327 E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~rit~~eai~l 406 (435)
|++++.|| ||||||||||+|++ |+|+|+++|+||+++++.+.+ +++..||+||||.||++.
T Consensus 219 E~~~t~r~-pEFT~le~E~af~d-~~dvm~~~E~li~~v~~~v~~-----------------~~~~~pf~r~ty~ea~~~ 279 (583)
T TIGR00459 219 EDLRADRQ-PEFTQIDMEMSFMT-QEDVMELIEKLVSHVFLEVKG-----------------IDLKKPFPVMTYAEAMER 279 (583)
T ss_pred CCCCCCCC-cccCcceeeecCCC-HHHHHHHHHHHHHHHHHHHhC-----------------CCCCCCceEEEHHHHHHH
Confidence 99999888 99999999999996 999999999999999988763 223579999999999973
No 23
>COG1190 LysU Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.2e-62 Score=498.71 Aligned_cols=297 Identities=23% Similarity=0.353 Sum_probs=252.7
Q ss_pred CCCCCCcccccccCcc----eEEeccccCCCCCCEEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHH
Q 013865 76 NDPQTGKWSEAVNGRE----WTVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMV 151 (435)
Q Consensus 76 ~~~~p~~~~~~~~~~~----~~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~ 151 (435)
.||||+.|..+.+..+ |.....-........|+|+|||+++|.+| |++|++|.|++++||++++.+. +..+.+
T Consensus 29 ~~~yp~~~~~~~~~~~l~~~~~~~~~~el~~~~~~v~vAGRi~~~R~~G-K~~F~~i~d~~gkiQ~yi~k~~--~~~~~~ 105 (502)
T COG1190 29 IDPYPNDFERTHTSADLREKYADKTKEELEALNIEVSVAGRIMTIRNMG-KASFADLQDGSGKIQLYVNKDE--VGEEVF 105 (502)
T ss_pred CCCCCCcCcccccHHHHHHHHhccchhhhhhccceeEEecceeeecccC-ceeEEEEecCCceEEEEEeccc--cchhhH
Confidence 5899999998876533 32221000111233499999999999999 8999999999999999999753 344555
Q ss_pred H-HHhcCCCCcEEEEEEEEecCCcccCCCceeEEEEEeEEEEeecC-CCCCcccccccchHHHHHhhhhcCCCCCCCCcc
Q 013865 152 R-FVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRA-AKTPITIEDASRSEAEIEKASKEGVQLPRVNQD 229 (435)
Q Consensus 152 k-~~~~l~~esiV~V~G~v~~~~~~~~~~t~~lEi~v~~i~vls~~-~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~e 229 (435)
+ +.+.+..||||.|+|.+.++ .+|+++|.++++.+|++| .+||-. .++++++|
T Consensus 106 ~~~~~~~dlGDiigv~G~~~~T------~~GelSv~v~~~~lLsKsL~pLPeK-------------------~hgL~D~E 160 (502)
T COG1190 106 EALFKKLDLGDIIGVEGPLFKT------KTGELSVSVEELRLLSKSLRPLPEK-------------------FHGLTDKE 160 (502)
T ss_pred HHHHhccccCCEEeeeeeeeec------CCCceEEEEEEEeeecccCCCCChh-------------------hcCCccHH
Confidence 5 66789999999999999763 468999999999999999 999965 34568999
Q ss_pred cccccccccccc-HHHHHHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCCCCCc--ceeEe--ccCCCceeeccChHH
Q 013865 230 TRLNNRVIDIRT-LANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGS--AVFRL--DYKGQSACLAQSPQL 304 (435)
Q Consensus 230 trl~~R~Ldlr~-~~~~~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~egga--~~F~v--~~~~~~~~L~~Spql 304 (435)
+|||+|||||.. +.++.+|..||.|+++||+||+++||+||+||+|+. ..||| .||.+ |.++.++|||+||+|
T Consensus 161 ~RyR~RylDLi~N~e~r~~f~~Rs~ii~~iR~fl~~~gFlEVETP~lq~--i~GGA~ArPF~ThhNald~dlyLRIApEL 238 (502)
T COG1190 161 IRYRQRYLDLIVNPESRQTFIKRSKIIRAIREFLDDRGFLEVETPMLQP--IPGGAAARPFITHHNALDMDLYLRIAPEL 238 (502)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHCCCeEeccccccc--cCCCcccccceeeecccCCceEEeeccHH
Confidence 999999999998 789999999999999999999999999999999985 44555 49988 569999999999999
Q ss_pred HHhhhccCCCceeEEEecceecCCCCCCccccccccceeeeeccccHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhcC
Q 013865 305 HKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQY 384 (435)
Q Consensus 305 ~lq~~i~~g~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~ 384 (435)
|||+||+|||+||||||++||||+. +.||||||||||+|+||+| |+|+|+++|+||++++..+.+.. .-.|
T Consensus 239 yLKRliVGG~erVfEIgr~FRNEGi-d~tHNPEFTmlE~Y~AYaD-y~D~m~ltE~Li~~~a~~v~gt~-------~v~y 309 (502)
T COG1190 239 YLKRLIVGGFERVFEIGRNFRNEGI-DTTHNPEFTMLEFYQAYAD-YEDLMDLTEELIKELAKEVNGTT-------KVTY 309 (502)
T ss_pred HHHHHHhcCchhheeeccccccCCC-ccccCcchhhHHHHHHHhH-HHHHHHHHHHHHHHHHHHhcCCe-------EEEE
Confidence 9999999999999999999999996 8999999999999999997 99999999999999999987532 1234
Q ss_pred CCcccCCCCCCceeeHHHHHHHHHHcCCC
Q 013865 385 PFEPLKYKPKTLRLTFEEGVQMLKDAGVE 413 (435)
Q Consensus 385 ~~~~~~~~~p~~rit~~eai~lL~~~g~~ 413 (435)
+...++|.+||.||++.+|+. ...|+.
T Consensus 310 ~~~~id~~~pf~ri~m~dal~--e~~g~~ 336 (502)
T COG1190 310 GGQEIDFSKPFKRITMVDALK--EYLGVD 336 (502)
T ss_pred CCEeEecCCCeeeeehHHHHH--HHhCcc
Confidence 556689999999999999996 566764
No 24
>PRK00476 aspS aspartyl-tRNA synthetase; Validated
Probab=100.00 E-value=1e-60 Score=511.19 Aligned_cols=277 Identities=29% Similarity=0.451 Sum_probs=241.7
Q ss_pred EEeccccCCCCCCEEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecC
Q 013865 93 TVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVP 172 (435)
Q Consensus 93 ~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~ 172 (435)
+.++++...+.|++|+|+|||+++|.+| +++|++|||+++.||||++. . .++++++..|+.||+|.|+|+|...
T Consensus 6 ~~~~~l~~~~~g~~V~l~GwV~~~R~~g-~l~Fi~LrD~~g~iQ~v~~~----~-~~~~~~~~~l~~es~V~V~G~v~~~ 79 (588)
T PRK00476 6 HYCGELRESHVGQTVTLCGWVHRRRDHG-GLIFIDLRDREGIVQVVFDP----D-AEAFEVAESLRSEYVIQVTGTVRAR 79 (588)
T ss_pred eeHHHhhHHhCCCEEEEEEEEEEEEeCC-CeEEEEEEeCCceEEEEEeC----C-HHHHHHHhCCCCCCEEEEEEEEEec
Confidence 5677787788999999999999999999 89999999999999999974 1 4677888999999999999999864
Q ss_pred C-ccc--CCCceeEEEEEeEEEEeecCCCCCcccccccchHHHHHhhhhcCCCCCCCCccccccccccccccHHHHHHHH
Q 013865 173 D-VEI--KGATQQVEVQIKKLYCVSRAAKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFR 249 (435)
Q Consensus 173 ~-~~~--~~~t~~lEi~v~~i~vls~~~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~etrl~~R~Ldlr~~~~~~i~~ 249 (435)
+ ..+ +..+|++||.+++|.+|++|.++|+.+.+.. ..+.++|+++||||||++..+++|+
T Consensus 80 ~~~~~n~~~~~g~~El~~~~i~il~~a~~lP~~~~~~~-----------------~~~~~~Rl~~R~LdlR~~~~~~~l~ 142 (588)
T PRK00476 80 PEGTVNPNLPTGEIEVLASELEVLNKSKTLPFPIDDEE-----------------DVSEELRLKYRYLDLRRPEMQKNLK 142 (588)
T ss_pred CCcccCccCCCCcEEEEEeEEEEEecCCCCCCcccccc-----------------cCChhhhhhcceEeecCHHHHHHHH
Confidence 3 222 2236889999999999999977888764321 1568999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCeEEeeCceeeccCCCCCcceeEec---cCCCceeeccChHHHHhhhccCCCceeEEEecceec
Q 013865 250 IQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLD---YKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRA 326 (435)
Q Consensus 250 ~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~egga~~F~v~---~~~~~~~L~~Spql~lq~~i~~g~~rVfeIgp~FR~ 326 (435)
+||.|++++|+||.++||+||+||+|+.+++|| |.+|.+. +.+..+||+||||||||+++++|++|||+|||||||
T Consensus 143 ~Rs~i~~~iR~ff~~~gFiEV~TP~L~~s~~eg-a~~f~v~~~~~~~~~~~L~qSpql~kq~l~~~g~~rvfqi~~~FR~ 221 (588)
T PRK00476 143 LRSKVTSAIRNFLDDNGFLEIETPILTKSTPEG-ARDYLVPSRVHPGKFYALPQSPQLFKQLLMVAGFDRYYQIARCFRD 221 (588)
T ss_pred HHHHHHHHHHHHHHHCCCEEEECCeeecCCCCC-CccceecccccCCceeecCCCHHHHHHHHHhcccCceEEEeceeec
Confidence 999999999999999999999999999888876 5568876 678888999999999999999999999999999999
Q ss_pred CCCCCCccccccccceeeeeccccHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhcCCCcccCCCCCCceeeHHHHHHH
Q 013865 327 EDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQM 406 (435)
Q Consensus 327 E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~rit~~eai~l 406 (435)
|++++.||+ |||||||||+|.+ |+|+|+++|+||+++++.+.+. ++..||+||||.||++
T Consensus 222 E~~~~~r~~-EFt~le~e~af~~-~~dvm~~~E~li~~i~~~~~~~-----------------~~~~pf~r~ty~ea~~- 281 (588)
T PRK00476 222 EDLRADRQP-EFTQIDIEMSFVT-QEDVMALMEGLIRHVFKEVLGV-----------------DLPTPFPRMTYAEAMR- 281 (588)
T ss_pred CCCCCCcCc-ccccceeeecCCC-HHHHHHHHHHHHHHHHHHHhCc-----------------cCCCCceEEEHHHHHH-
Confidence 999999987 9999999999996 9999999999999999887521 1246899999999996
Q ss_pred HHHcCCCCC
Q 013865 407 LKDAGVEID 415 (435)
Q Consensus 407 L~~~g~~~~ 415 (435)
..|.+-|
T Consensus 282 --~yg~dkP 288 (588)
T PRK00476 282 --RYGSDKP 288 (588)
T ss_pred --HHCCCCC
Confidence 5565544
No 25
>PRK12820 bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional
Probab=100.00 E-value=9.9e-61 Score=514.87 Aligned_cols=286 Identities=27% Similarity=0.380 Sum_probs=238.2
Q ss_pred EEeccccCCCCCCEEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecC
Q 013865 93 TVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVP 172 (435)
Q Consensus 93 ~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~ 172 (435)
+.|++|...+.|++|+|+|||+++|.+| +++|++|||+++.||||++.+. ++.++++++..|+.||+|.|+|+|..+
T Consensus 7 ~~cg~l~~~~~g~~V~l~GWV~~~R~~G-~l~FidLRD~~G~iQvV~~~~~--~~~~~~~~~~~L~~EsvV~V~G~v~~r 83 (706)
T PRK12820 7 SFCGHLSLDDTGREVCLAGWVDAFRDHG-ELLFIHLRDRNGFIQAVFSPEA--APADVYELAASLRAEFCVALQGEVQKR 83 (706)
T ss_pred cccccCChhhCCCEEEEEEEEEEEEcCC-CcEEEEEEeCCccEEEEEeCCc--CCHHHHHHHhcCCCCCEEEEEeEEecc
Confidence 6789999999999999999999999999 8999999999999999998542 466788899999999999999999874
Q ss_pred Cccc---CCCceeEEEEEeEEEEeecCCCCCcccccccchHHHHHhhhhcCCCCCCCCccccccccccccccHHHHHHHH
Q 013865 173 DVEI---KGATQQVEVQIKKLYCVSRAAKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFR 249 (435)
Q Consensus 173 ~~~~---~~~t~~lEi~v~~i~vls~~~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~etrl~~R~Ldlr~~~~~~i~~ 249 (435)
+... ...+|++||.+++|.||++|..+|+.+.+...+.. ..+..+..++.++|++|||||||++..+++|+
T Consensus 84 ~~~~~n~~~~tg~iEl~~~~i~iL~~a~~lP~~i~~~~~~~~------~~~~~~~~~~e~~Rl~~RyLDLR~~~~~~~lr 157 (706)
T PRK12820 84 LEETENPHIETGDIEVFVRELSILAASEALPFAISDKAMTAG------AGSAGADAVNEDLRLQYRYLDIRRPAMQDHLA 157 (706)
T ss_pred CccccCCCCCCCcEEEEeeEEEEEecCCCCCCCCcccccccc------cccccccccCHhhhhhCceeecCCHHHHHHHH
Confidence 3221 22358899999999999999667776554211000 00011223678999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCeEEeeCceeeccCCCCCcce-eEeccCCCce-eeccChHHHHhhhccCCCceeEEEecceecC
Q 013865 250 IQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAV-FRLDYKGQSA-CLAQSPQLHKQMSICGDFGRVFETGPVFRAE 327 (435)
Q Consensus 250 ~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~egga~~-F~v~~~~~~~-~L~~Spql~lq~~i~~g~~rVfeIgp~FR~E 327 (435)
+||.|+++||+||.++||+||+||+|+.++++|+.+. +...+++..+ +|+||||||||+++++|++|||+||||||||
T Consensus 158 ~Rs~i~~~iR~fl~~~gFiEVeTPiL~~s~~eGAr~~~~p~~~~~~~~y~L~qSPQlykq~lm~~G~~rvfqI~~~FR~E 237 (706)
T PRK12820 158 KRHRIIKCARDFLDSRGFLEIETPILTKSTPEGARDYLVPSRIHPKEFYALPQSPQLFKQLLMIAGFERYFQLARCFRDE 237 (706)
T ss_pred HHHHHHHHHHHHHHHCCCEEEeCCccccCCCCCCcceEEeeecCCCcceecCCCHHHHHHHHHhccCCcEEEEechhcCC
Confidence 9999999999999999999999999999888876553 2334455554 5999999999999999999999999999999
Q ss_pred CCCCCccccccccceeeeeccccHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhcCCCcccCCCCCCceeeHHHHHHHH
Q 013865 328 DSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQML 407 (435)
Q Consensus 328 ~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~rit~~eai~lL 407 (435)
++++.|| ||||||||||+|++ ++|+|+++|+||+++++ +. + .++..||+||||.||++.+
T Consensus 238 ~~~t~r~-pEFT~LE~E~af~d-~~dvm~l~E~li~~v~~-~~----------~-------~~~~~pf~r~ty~eA~~~y 297 (706)
T PRK12820 238 DLRPNRQ-PEFTQLDIEASFID-EEFIFELIEELTARMFA-IG----------G-------IALPRPFPRMPYAEAMDTT 297 (706)
T ss_pred CCCCCcC-ccccccceeeccCC-HHHHHHHHHHHHHHHHH-hc----------C-------cCCCCCceEEEHHHHHHHh
Confidence 9988877 99999999999996 99999999999999985 11 0 1234699999999999744
No 26
>COG0173 AspS Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.9e-59 Score=482.21 Aligned_cols=273 Identities=30% Similarity=0.467 Sum_probs=246.3
Q ss_pred EEeccccCCCCCCEEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecC
Q 013865 93 TVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVP 172 (435)
Q Consensus 93 ~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~ 172 (435)
+.|++|..+++|++|+++||||+.|.+| +|+|++|||..|.+|||++.. .+++.++.+..|+.|++|.|+|+|...
T Consensus 4 ~~cg~l~~~~vG~~V~L~GWV~r~Rd~G-gliFiDLRDr~GivQvv~~~~---~~~~~~~~a~~lr~E~vi~V~G~V~~R 79 (585)
T COG0173 4 HYCGELRESHVGQTVTLSGWVHRRRDHG-GLIFIDLRDREGIVQVVFDPE---DSPEAFEVASRLRNEFVIQVTGTVRAR 79 (585)
T ss_pred eeccccCHHHCCCEEEEEeeeeeccccC-CeEEEEcccCCCeEEEEECCc---cCHHHHHHHHhcCceEEEEEEEEEEec
Confidence 6788999999999999999999999999 799999999999999999853 367888999999999999999988753
Q ss_pred Cc---ccCCCceeEEEEEeEEEEeecCCCCCcccccccchHHHHHhhhhcCCCCCCCCccccccccccccccHHHHHHHH
Q 013865 173 DV---EIKGATQQVEVQIKKLYCVSRAAKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFR 249 (435)
Q Consensus 173 ~~---~~~~~t~~lEi~v~~i~vls~~~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~etrl~~R~Ldlr~~~~~~i~~ 249 (435)
+. ..+-.||++||++++|.||+.|..|||.+.|.. .++.|+||.|||||||.+.++..++
T Consensus 80 ~e~~~N~~l~TGeiEv~a~~i~vln~s~~lPf~i~d~~-----------------~~~Ee~RLkYRyLDLRR~~m~~~l~ 142 (585)
T COG0173 80 PEGTINPNLPTGEIEVLAEEIEVLNASKTLPFQIEDET-----------------NASEEIRLKYRYLDLRRPEMQKNLK 142 (585)
T ss_pred CccccCCCCCcceEEEEeeeEEEEecCCCCCcCCCCCC-----------------CcchhhhhhhhhhhhcCHHHHHHHH
Confidence 32 234567999999999999999999999987631 2678999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCeEEeeCceeeccCCCCCcceeEec---cCCCceeeccChHHHHhhhccCCCceeEEEecceec
Q 013865 250 IQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLD---YKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRA 326 (435)
Q Consensus 250 ~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~egga~~F~v~---~~~~~~~L~~Spql~lq~~i~~g~~rVfeIgp~FR~ 326 (435)
+||.++.++|+||+++||+||+||+|+.+++|| |..|-|. +-|..+-|.||||||||.||++||+|+|+|++|||+
T Consensus 143 lR~kv~~~iR~~ld~~gF~EiETPiLtkSTPEG-ARDfLVPSRv~~G~FYALPQSPQlfKQLLMvsGfdRYyQIarCFRD 221 (585)
T COG0173 143 LRSKVTKAIRNFLDDQGFLEIETPILTKSTPEG-ARDFLVPSRVHPGKFYALPQSPQLFKQLLMVAGFDRYYQIARCFRD 221 (585)
T ss_pred HHHHHHHHHHHHHhhcCCeEeecCccccCCCcc-ccccccccccCCCceeecCCCHHHHHHHHHHhcccceeeeeeeecc
Confidence 999999999999999999999999999988885 8888885 467889999999999999999999999999999999
Q ss_pred CCCCCCccccccccceeeeeccccHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhcCCCcccCCCCCCceeeHHHHHHH
Q 013865 327 EDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQM 406 (435)
Q Consensus 327 E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~rit~~eai~l 406 (435)
|+.+..|. |||||+|+||+|.+ -+|+|+++|+|+.++|+.+.+ +++..||+||||.||+.-
T Consensus 222 EDlRaDRQ-PEFTQiD~EmSF~~-~edv~~~~E~l~~~vf~~~~~-----------------i~l~~pFprmtY~eAm~~ 282 (585)
T COG0173 222 EDLRADRQ-PEFTQIDLEMSFVD-EEDVMELIEKLLRYVFKEVKG-----------------IELKTPFPRMTYAEAMRR 282 (585)
T ss_pred cccccccC-CcceeEeEEeecCC-HHHHHHHHHHHHHHHHHHhcC-----------------CccCCCcccccHHHHHHH
Confidence 99999999 99999999999997 799999999999999998753 233459999999999963
No 27
>KOG0554 consensus Asparaginyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5e-57 Score=446.75 Aligned_cols=298 Identities=27% Similarity=0.404 Sum_probs=263.4
Q ss_pred cCCCCCCEEEEEEEEeeeecCCCceEEEEEEeCC--eEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCccc
Q 013865 99 NGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERV--STVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEI 176 (435)
Q Consensus 99 ~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~--~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~~~ 176 (435)
.....|++++|.|||.++|.+| +.+|++|.||+ ..+|||++. ...+.+..|+.|.|.|.+..+
T Consensus 15 ~~~~~g~~~~i~GWvKsvr~~~-~~~Fl~i~DGs~~~~lQvVv~~----------~~~q~la~Gt~i~~~g~l~~~---- 79 (446)
T KOG0554|consen 15 GHPRAGDTISIGGWVKSVRKLK-KVTFLDINDGSCPSPLQVVVDS----------EQSQLLATGTCISAEGVLKVS---- 79 (446)
T ss_pred cCCCCCCceeecchhhhccccc-ceEEEEecCCCCCcceEEEech----------HHhhhccccceEEEEeeEEec----
Confidence 4456799999999999999999 78999999997 489999985 234679999999999999876
Q ss_pred CCCceeEEEEEeEEEEeecC-CCCCcccccccchHHHHHhhhhcCCCCCCCCccccccccccccccHHHHHHHHHHHHHH
Q 013865 177 KGATQQVEVQIKKLYCVSRA-AKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVG 255 (435)
Q Consensus 177 ~~~t~~lEi~v~~i~vls~~-~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~etrl~~R~Ldlr~~~~~~i~~~rs~i~ 255 (435)
++..+++|+.+.+|.+++.+ +.+|++.+. ..++...+.-||+.||....+++|+||.+.
T Consensus 80 ~~~~q~iel~~eki~~vG~v~~~ypl~Kk~--------------------lt~e~LR~~~HLR~Rt~~~~av~RvRs~~~ 139 (446)
T KOG0554|consen 80 KGAKQQIELNAEKIKVVGTVDESYPLQKKK--------------------LTPEMLRDKLHLRSRTAKVGAVLRVRSALA 139 (446)
T ss_pred cchheeeeeeeeEEEEEeecCCCCCCcccc--------------------CCHHHHhhcccccchhhHHHHHHHHHHHHH
Confidence 46678999999999999999 789987553 345666688899999999999999999999
Q ss_pred HHHHHHhhcCCeEEeeCceeeccCCCCCcceeEe--------ccCCCceeeccChHHHHhhhccCCCceeEEEecceecC
Q 013865 256 NIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRL--------DYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAE 327 (435)
Q Consensus 256 ~~~r~fl~~~gF~EV~TP~l~~~~~egga~~F~v--------~~~~~~~~L~~Spql~lq~~i~~g~~rVfeIgp~FR~E 327 (435)
.++|.||.++||++|+||+|+.++|||++++|.| +|||+++||++|.|||++ +++.++.|||.+||+||||
T Consensus 140 ~a~h~ffq~~~F~~i~tPiiTt~DCEGaGE~F~vtt~~d~~~~fFg~p~fLTVSgQLhlE-~~a~~LsrvyTfgP~FRAE 218 (446)
T KOG0554|consen 140 FATHSFFQSHDFTYINTPIITTNDCEGAGEVFQVTTLTDYSKDFFGRPAFLTVSGQLHLE-AMACALSRVYTFGPTFRAE 218 (446)
T ss_pred HHHHHHHHHcCceEecCcEeeccCCCCCcceEEEEecCcccccccCCceEEEEeceehHH-HHHhhhcceEeeccceecc
Confidence 9999999999999999999999999999999987 589999999999999999 4567899999999999999
Q ss_pred CCCCCccccccccceeeeeccccHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhcCCCcc-----cCCCCCCceeeHHH
Q 013865 328 DSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEP-----LKYKPKTLRLTFEE 402 (435)
Q Consensus 328 ~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~-----~~~~~p~~rit~~e 402 (435)
+|+++|||.||||+|.|+||++.++|+|.++|.+++++++.+.++|.++++...+...... ..+..+|.||||.|
T Consensus 219 nS~tsRHLAEFwMlEaE~AF~~sl~d~m~~~e~~~K~mik~llek~~edmel~~k~~~~~~~~rl~~~~~~~~~~~tYte 298 (446)
T KOG0554|consen 219 NSHTSRHLAEFWMLEAELAFAESLDDLMSCAEAYIKHMIKYLLEKCIEDMELMHKNEDPGSIDRLELVAKENLLRITYTE 298 (446)
T ss_pred cCCchhHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhheeccccCCCccchhhhhccchhhhccHHH
Confidence 9999999999999999999998899999999999999999999999988876555432111 11234689999999
Q ss_pred HHHHHHHcC-----CCCCCCCCCCcHHHHHHHHHh
Q 013865 403 GVQMLKDAG-----VEIDPLGDLNTESERKLGQLV 432 (435)
Q Consensus 403 ai~lL~~~g-----~~~~~~~dl~te~E~~L~~~v 432 (435)
||++|.+++ .++.||.||++|||++|++..
T Consensus 299 Aie~L~~a~t~~fk~~~kwG~~l~~ehe~yL~~~~ 333 (446)
T KOG0554|consen 299 AIELLQKAVTKKFKTPPKWGIDLSTEHEKYLVEEC 333 (446)
T ss_pred HHHHHHHhcccccccCcccccccchhhHHHHHHHh
Confidence 999999976 357899999999999999875
No 28
>KOG0555 consensus Asparaginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.1e-56 Score=439.55 Aligned_cols=368 Identities=23% Similarity=0.307 Sum_probs=285.8
Q ss_pred CCCccccChhHHHHHHHHHHHHHHHHHHHH----HHHHHhhcc-ccccCCCCCCcccCChhhhhccCCCCCCcccccccC
Q 013865 15 DSSSQSISKKAAKKEAAKKAKEERRKEAEA----AASAASALS-IEEEGPLANNYGDVPLQELQSVNDPQTGKWSEAVNG 89 (435)
Q Consensus 15 ~~~~~~~sk~~lkk~~k~~~k~~kka~~~~----~~~~~~~~~-~~~~d~~~~~Yg~~~~~~~~~~~~~~p~~~~~~~~~ 89 (435)
++.=++.||++|||.+|.=..+.+|.+++. ++..+..++ ++.....-..+-.+ +.
T Consensus 50 ~e~~e~~sk~~Lkk~~kg~~~~~~k~~k~~~~ea~~~ek~~~~le~a~ki~ised~sl--------------------p~ 109 (545)
T KOG0555|consen 50 SEEYEPISKSALKKIKKGWVRECKKSAKASQKEAEASEKREKNLEEAKKITISEDKSL--------------------PA 109 (545)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHhhhcccccCCCCC--------------------ch
Confidence 334468999999999987766665554321 111111110 01111111112122 22
Q ss_pred cceEEeccccCCCCCCEEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEE
Q 013865 90 REWTVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVV 169 (435)
Q Consensus 90 ~~~~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v 169 (435)
.+-++|.+. .+..|+.|.|.||||+.|.+ ++|+||+|||+++.||||++.+-. .+- + +-.|+.+|.|.|.|++
T Consensus 110 ak~iki~~s-~~~r~qrVkv~gWVhrlR~q-k~l~FivLrdg~gflqCVl~~kl~-~~y---d-~~~Ls~essv~vYG~i 182 (545)
T KOG0555|consen 110 AKKIKIYDS-TENRGQRVKVFGWVHRLRRQ-KSLIFIVLRDGTGFLQCVLSDKLC-QSY---D-ALTLSTESSVTVYGTI 182 (545)
T ss_pred hheeeeccc-ccccCceEEeehhhHhhhhc-CceEEEEEecCCceEEEEEcchhh-hhh---c-cccccccceEEEEEEE
Confidence 344566553 35789999999999999999 599999999999999999985321 111 1 1258999999999999
Q ss_pred ecCCcccCCCceeEEEEEeEEEEeecCCCCCcccccccchHHHHHhhhhcCCCCCCCCccccccccccccccHHHHHHHH
Q 013865 170 SVPDVEIKGATQQVEVQIKKLYCVSRAAKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFR 249 (435)
Q Consensus 170 ~~~~~~~~~~t~~lEi~v~~i~vls~~~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~etrl~~R~Ldlr~~~~~~i~~ 249 (435)
++.+. .|++.++.||.|.-+.|++.++.--+... .. --.+.+..|+||||-+|....+.+++
T Consensus 183 ~~~p~-GK~apgghEl~vdy~Eiig~Apag~~~n~---ln--------------e~s~~~~~LdnrHl~iRge~~s~vLK 244 (545)
T KOG0555|consen 183 KKLPE-GKSAPGGHELNVDYWEIIGLAPAGGFDNP---LN--------------EESDVDVLLDNRHLVIRGENASKVLK 244 (545)
T ss_pred ecCcC-CCCCCCCceEEeeeeeeecccCCCccccc---cc--------------ccCCcceEeccceeEEechhHHHHHH
Confidence 87643 34567899999999999988722111100 00 01466788999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCeEEeeCceeeccCCCCCcceeEeccCCCceeeccChHHHHhhhccCCCceeEEEecceecCCC
Q 013865 250 IQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDS 329 (435)
Q Consensus 250 ~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~~~~~~~L~~Spql~lq~~i~~g~~rVfeIgp~FR~E~s 329 (435)
+|+.+++++|++|.++|+.||.+|.|.....|||+..|+++|||.++||+||.||||+.++. .+++||+|.++||||.|
T Consensus 245 ~Ra~~lr~~Rd~y~~~~ytEVtPPtmVQTQVEGGsTLFkldYyGEeAyLTQSSQLYLEtclp-Algdvy~I~~SyRAEkS 323 (545)
T KOG0555|consen 245 ARAALLRAMRDHYFERGYTEVTPPTMVQTQVEGGSTLFKLDYYGEEAYLTQSSQLYLETCLP-ALGDVYCIQQSYRAEKS 323 (545)
T ss_pred HHHHHHHHHHHHHHhcCceecCCCceEEEEecCcceEEeecccCchhhccchhHHHHHHhhh-hcCceeEecHhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999998875 59999999999999999
Q ss_pred CCCccccccccceeeeeccccHHHHHHHHHHHHHHHHhhhhhhhH-HHHHHhhhcCCCcccCCCCCCceeeHHHHHHHHH
Q 013865 330 YTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCK-KELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLK 408 (435)
Q Consensus 330 ~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~-~~l~~~~~~~~~~~~~~~~p~~rit~~eai~lL~ 408 (435)
.|.|||+|||++|+|++|.+ ++|+|+.+|.|++..+..+.+.-. ..+..++..+.. ...||.||.|+|||+.|+
T Consensus 324 rTRRHLsEytHVEaE~aflt-fd~ll~~iE~lvc~~vdr~l~dp~~~li~~lnP~f~~----P~~PFkRm~Y~dAI~wLk 398 (545)
T KOG0555|consen 324 RTRRHLSEYTHVEAECAFLT-FDDLLDRIEALVCDSVDRLLEDPIAPLIKQLNPDFKA----PKRPFKRMNYSDAIEWLK 398 (545)
T ss_pred hhhhhhhhheeeeeeccccc-HHHHHHHHHHHHHHHHHHHHhChhhhhHHHhCCCCCC----CCCchhcCCHHHHHHHHH
Confidence 99999999999999999997 999999999999999999876533 345555443322 135999999999999999
Q ss_pred HcCCC------CCCCCCCCcHHHHHHHHHhh
Q 013865 409 DAGVE------IDPLGDLNTESERKLGQLVL 433 (435)
Q Consensus 409 ~~g~~------~~~~~dl~te~E~~L~~~vk 433 (435)
++++. .+.|+|+....||++.+-|.
T Consensus 399 e~~vk~edg~~fefGdDI~eAaER~mtdtIg 429 (545)
T KOG0555|consen 399 EHDVKKEDGTDFEFGDDIPEAAERKMTDTIG 429 (545)
T ss_pred hcCCcCccCcccccccchhhHHHHhhhhhcC
Confidence 98654 56679999999999988764
No 29
>cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain. Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=100.00 E-value=2.9e-50 Score=404.52 Aligned_cols=206 Identities=47% Similarity=0.715 Sum_probs=189.8
Q ss_pred CCccccccccccccccHHHHHHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCCCCCcceeEeccCCCceeeccChHHH
Q 013865 226 VNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLH 305 (435)
Q Consensus 226 ~~~etrl~~R~Ldlr~~~~~~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~~~~~~~L~~Spql~ 305 (435)
+++++|++|||||+|++..++++++||.|++++|+||.++||+||+||+|+++++||++++|.++|||.++||++|||||
T Consensus 2 ~~~~~~~~~r~l~lr~~~~~~~~~~rs~i~~~ir~~f~~~gf~eV~TP~l~~~~~e~~~~~f~~~~~~~~~yL~~Spql~ 81 (322)
T cd00776 2 ANLETLLDNRHLDLRTPKVQAIFRIRSEVLRAFREFLRENGFTEVHTPKITSTDTEGGAELFKVSYFGKPAYLAQSPQLY 81 (322)
T ss_pred CChHhhhhCceeeeCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEeeCCceecCCCCccCCccccccCCCcceecCCHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhccCCCceeEEEecceecCCCCCCccccccccceeeeeccccHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhcCC
Q 013865 306 KQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYP 385 (435)
Q Consensus 306 lq~~i~~g~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~ 385 (435)
||++++| ++|||+||||||||+++++|||||||||||||+|+++|+|+|+++|+||+++++.+.+.|..++..++ .+.
T Consensus 82 lk~l~~~-~~~vf~i~~~FR~E~~~~~rHl~EFtmlE~e~~~~~~~~dlm~~~e~ll~~~~~~l~~~~~~~~~~~~-~~~ 159 (322)
T cd00776 82 KEMLIAA-LERVYEIGPVFRAEKSNTRRHLSEFWMLEAEMAFIEDYNEVMDLIEELIKYIFKRVLERCAKELELVN-QLN 159 (322)
T ss_pred HHHHHHh-hhhhEEeccccccCCCCcCCCcceeeccceeeeccCCHHHHHHHHHHHHHHHHHHHHhccHHHHhhhh-ccC
Confidence 9999987 99999999999999998999999999999999999569999999999999999999999988876642 222
Q ss_pred CcccCCCCCCceeeHHHHHHHHHHcCC--CCCCCCCCCcHHHHHHHHHhh
Q 013865 386 FEPLKYKPKTLRLTFEEGVQMLKDAGV--EIDPLGDLNTESERKLGQLVL 433 (435)
Q Consensus 386 ~~~~~~~~p~~rit~~eai~lL~~~g~--~~~~~~dl~te~E~~L~~~vk 433 (435)
.....+..||+||||.||+++|.+.|. +++|++||++++|++|+++++
T Consensus 160 ~~~~~~~~~~~rit~~eA~~~l~~~~~~~~~~~~~~l~~~~e~~l~~~~~ 209 (322)
T cd00776 160 RELLKPLEPFPRITYDEAIELLREKGVEEEVKWGEDLSTEHERLLGEIVK 209 (322)
T ss_pred cccccCCCCceEEEHHHHHHHHHHcCCCCCCCccchhcHHHHHHHHHHhC
Confidence 223345679999999999999999987 788999999999999999873
No 30
>KOG2411 consensus Aspartyl-tRNA synthetase, mitochondrial [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.8e-47 Score=384.90 Aligned_cols=282 Identities=25% Similarity=0.390 Sum_probs=239.4
Q ss_pred eEEeccccCCCCCCEEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEec
Q 013865 92 WTVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSV 171 (435)
Q Consensus 92 ~~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~ 171 (435)
.+.|++|....+|+.|.++|||.-.|.+| .+.|..|||..|.||+.++.+.. . ...+....++.||+|.|.|+|..
T Consensus 35 t~~~~el~~~~vg~kv~l~GWl~~~~~~k-~~~F~~LRD~~G~vq~lls~~s~--~-l~~~~~~~v~~e~vv~v~gtvv~ 110 (628)
T KOG2411|consen 35 TSLCGELSVNDVGKKVVLCGWLELHRVHK-MLTFFNLRDAYGIVQQLLSPDSF--P-LAQKLENDVPLEDVVQVEGTVVS 110 (628)
T ss_pred hccchhhccCccCCEEEEeeeeeeeeccc-cceEEEeeccCcceEEEecchhh--h-HHhcccCCCChhheEeeeeeEec
Confidence 36788888889999999999999999996 89999999999999999885421 0 11233456899999999999874
Q ss_pred -CC--cccCCCceeEEEEEeEEEEeecC-CCCCcccccccchHHHHHhhhhcCCCCCCCCccccccccccccccHHHHHH
Q 013865 172 -PD--VEIKGATQQVEVQIKKLYCVSRA-AKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGI 247 (435)
Q Consensus 172 -~~--~~~~~~t~~lEi~v~~i~vls~~-~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~etrl~~R~Ldlr~~~~~~i 247 (435)
|. .+.+..+|.+|+..+++++++++ ..+|+.+.|....+ -+.+..+||++||||||.+..|..
T Consensus 111 Rp~~sin~km~tg~vev~~e~~~vln~~~~~~p~~v~df~~ld-------------~~~~er~rl~~RyldLR~~kmq~n 177 (628)
T KOG2411|consen 111 RPNESINSKMKTGFVEVVAEKVEVLNPVNKKLPFEVTDFKELD-------------DLAGERIRLRFRYLDLRRPKMQNN 177 (628)
T ss_pred ccccccCccccccceEEEeeeeEEecCccCCCccchhhhhhhh-------------ccccccccchhhhhhhccHHHHHH
Confidence 33 34456678999999999999999 99999988764211 125678899999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcC-CeEEeeCceeeccCCCCCcceeEecc---CCCceeeccChHHHHhhhccCCCceeEEEecc
Q 013865 248 FRIQSQVGNIFRQFLLSE-NFVEIHTPKLIAGSSEGGSAVFRLDY---KGQSACLAQSPQLHKQMSICGDFGRVFETGPV 323 (435)
Q Consensus 248 ~~~rs~i~~~~r~fl~~~-gF~EV~TP~l~~~~~egga~~F~v~~---~~~~~~L~~Spql~lq~~i~~g~~rVfeIgp~ 323 (435)
+|+||.+...+|+||.++ ||+||+||+|-.. +.|||..|.|.- -|..+-|.||||.||||||+||++|+|+|++|
T Consensus 178 LrlRS~~v~~iR~yl~n~~GFvevETPtLFkr-TPgGA~EFvVPtr~~~g~FYaLpQSPQQfKQlLMvsGidrYyQiARC 256 (628)
T KOG2411|consen 178 LRLRSNVVKKIRRYLNNRHGFVEVETPTLFKR-TPGGAREFVVPTRTPRGKFYALPQSPQQFKQLLMVSGIDRYYQIARC 256 (628)
T ss_pred HHHHHHHHHHHHHHHhhhcCeeeccCcchhcc-CCCccceeecccCCCCCceeecCCCHHHHHHHHHHhchhhHHhHHhh
Confidence 999999999999999875 7999999999875 556788898854 36788899999999999999999999999999
Q ss_pred eecCCCCCCccccccccceeeeeccccHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhcCCCcccCCCCCCceeeHHHH
Q 013865 324 FRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEG 403 (435)
Q Consensus 324 FR~E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~rit~~ea 403 (435)
||+|++...|. |||||+|+||+|.+ .+|+|.++|+++.+++...... ....||+||||.+|
T Consensus 257 fRDEdlR~DRQ-PEFTQvD~EMsF~~-~~dim~liEdll~~~ws~~k~~-----------------~l~~PF~riTY~~A 317 (628)
T KOG2411|consen 257 FRDEDLRADRQ-PEFTQVDMEMSFTD-QEDIMKLIEDLLRYVWSEDKGI-----------------QLPVPFPRITYADA 317 (628)
T ss_pred hcccccCcccC-CcceeeeeEEeccC-HHHHHHHHHHHHHHhchhhcCC-----------------CCCCCcccccHHHH
Confidence 99999988888 99999999999997 7999999999999999875431 23469999999999
Q ss_pred HHHHHHcCCC
Q 013865 404 VQMLKDAGVE 413 (435)
Q Consensus 404 i~lL~~~g~~ 413 (435)
++ ..|.+
T Consensus 318 m~---~YG~D 324 (628)
T KOG2411|consen 318 MD---KYGSD 324 (628)
T ss_pred HH---HhCCC
Confidence 97 55544
No 31
>PRK06462 asparagine synthetase A; Reviewed
Probab=100.00 E-value=6.5e-48 Score=389.22 Aligned_cols=201 Identities=29% Similarity=0.427 Sum_probs=181.5
Q ss_pred CCccccccccccccccHHHHHHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCCCC---C----cceeEeccCCCceee
Q 013865 226 VNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEG---G----SAVFRLDYKGQSACL 298 (435)
Q Consensus 226 ~~~etrl~~R~Ldlr~~~~~~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~eg---g----a~~F~v~~~~~~~~L 298 (435)
.+.++|++||+||+|++..+++|++||.|++++|+||.++||+||+||+|++++++| | +..|.++|||+++||
T Consensus 8 ~~~~~~~~~r~~~lr~~~~~~il~~Rs~i~~~iR~ff~~~~f~EV~TP~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~yL 87 (335)
T PRK06462 8 KEYEEFLRMSWKHISSEKYRKVLKVQSSILRYTREFLDGRGFVEVLPPIISPSTDPLMGLGSDLPVKQISIDFYGVEYYL 87 (335)
T ss_pred cchhhhhhhHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCCeEecCCCCCCCccccCCccccccccCCCceee
Confidence 578999999999999999999999999999999999999999999999999876653 2 335778899999999
Q ss_pred ccChHHHHhhhccCCCceeEEEecceecCCCCC--CccccccccceeeeeccccHHHHHHHHHHHHHHHHhhhhhhhHHH
Q 013865 299 AQSPQLHKQMSICGDFGRVFETGPVFRAEDSYT--HRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKE 376 (435)
Q Consensus 299 ~~Spql~lq~~i~~g~~rVfeIgp~FR~E~s~t--~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~ 376 (435)
++|||||||++ ++|++|||+||||||||++++ +|||||||||||||+|++ |+|+|+++|+||++++..+.++|..+
T Consensus 88 ~~Spql~k~ll-~~g~~rVfeI~p~FR~E~~~~~~~rHl~EFtmlE~e~~~~d-~~dlm~~~e~lv~~i~~~~~~~~~~~ 165 (335)
T PRK06462 88 ADSMILHKQLA-LRMLGKIFYLSPNFRLEPVDKDTGRHLYEFTQLDIEIEGAD-LDEVMDLIEDLIKYLVKELLEEHEDE 165 (335)
T ss_pred ccCHHHHHHHH-HhhcCcEEEEeccccCCCCCCCCCCCCCchheeeehhhcCC-HHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 99999998865 567999999999999999977 799999999999999985 99999999999999999999999988
Q ss_pred HHHhhhcCCCcccCCCCCCceeeHHHHHHHHHHcCCCCCCCCCCCcHHHHHHHHHh
Q 013865 377 LEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKDAGVEIDPLGDLNTESERKLGQLV 432 (435)
Q Consensus 377 l~~~~~~~~~~~~~~~~p~~rit~~eai~lL~~~g~~~~~~~dl~te~E~~L~~~v 432 (435)
|..++...+ .+..||+||||.||+++|++.|.+.++++||++++|++|++++
T Consensus 166 i~~~~~~~~----~~~~p~~rit~~eA~~~l~~~~~~~~~~~~l~~~~E~~l~~~~ 217 (335)
T PRK06462 166 LEFFGRDLP----HLKRPFKRITHKEAVEILNEEGCRGIDLEELGSEGEKSLSEHF 217 (335)
T ss_pred HHhcCCccc----cCCCCCeEEEHHHHHHHHHhcCCCcchHHHHhHHHHHHHHHHh
Confidence 877655332 2356999999999999999999888888999999999999876
No 32
>PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry includes the asparagine, aspartic acid and lysine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1N9W_B 1BBU_A 1BBW_A 4EX5_B 3E9I_A 3E9H_C 3A74_C 1NNH_A 3M4P_C 3M4Q_B ....
Probab=100.00 E-value=8.3e-47 Score=381.49 Aligned_cols=194 Identities=37% Similarity=0.580 Sum_probs=165.7
Q ss_pred CccccccccccccccHHHHHHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCCCCCcceeEec-----cCCCceeeccC
Q 013865 227 NQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLD-----YKGQSACLAQS 301 (435)
Q Consensus 227 ~~etrl~~R~Ldlr~~~~~~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~egga~~F~v~-----~~~~~~~L~~S 301 (435)
++|+|++|||||+|++..+++|++||.|+++||+||.++||+||+||+|++++++||+++|.|+ |||.++||++|
T Consensus 1 ~~e~~~~~r~l~~r~~~~~~~~~~rs~i~~~ir~ff~~~~f~Ev~tP~l~~~~~~~~~~~F~v~~~~~~~~~~~~~L~~S 80 (335)
T PF00152_consen 1 DEETRLDNRHLDLRTPAMSSILRIRSAILQAIREFFDKRGFIEVDTPILTSSTCEGGAEPFSVDSEPGKYFGEPAYLTQS 80 (335)
T ss_dssp -HHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTT-EEE---SEESSSSSSSSCSEEEEESTTEETTEEEEE-SS
T ss_pred ChhhhhhccceeccCcHHHHHHHHHHHHHHHHHHHHHhCCceEEcCceeeccccCccccccccccchhhhcccceecCcC
Confidence 3689999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred hHHHHhhhccCCCceeEEEecceecCCCCCCccccccccceeeeeccccHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhh
Q 013865 302 PQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVA 381 (435)
Q Consensus 302 pql~lq~~i~~g~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~ 381 (435)
||||||+++++|++|||+||||||||+++|.|||||||||||||+|++ ++++|+++|+||+++++.+..+.. .+ .+
T Consensus 81 pql~~k~ll~~g~~~vf~i~~~FR~E~~~~~rHl~EFtmLE~e~a~~~-~~~lm~~~e~li~~i~~~~~~~~~-~~-~~- 156 (335)
T PF00152_consen 81 PQLYLKRLLAAGLERVFEIGPCFRNEESRTRRHLPEFTMLEWEMAFAD-YDDLMDLIEELIKYIFKELLENAK-EL-SL- 156 (335)
T ss_dssp SHHHHHHHHHTTHSEEEEEEEEE-BSSSCBTTBSSEEEEEEEEEETSS-HHHHHHHHHHHHHHHHHHHHHHHH-HH-HT-
T ss_pred hHHHHhhhccccchhhhheecceeccCcccccchhhhhhhhhccccCc-HHHhHHHHHHHHHHHHHHHhccCc-cc-cc-
Confidence 999999999999999999999999999999999999999999999997 889999999999999999976522 21 11
Q ss_pred hcCCCcccCCCCCCceeeHHHHHHHHHHcCCCCCC-----------------CCCCCcHHHHHHHH
Q 013865 382 KQYPFEPLKYKPKTLRLTFEEGVQMLKDAGVEIDP-----------------LGDLNTESERKLGQ 430 (435)
Q Consensus 382 ~~~~~~~~~~~~p~~rit~~eai~lL~~~g~~~~~-----------------~~dl~te~E~~L~~ 430 (435)
.+++..||+||||.||++++...+.++.. +.+|++..|+.|+.
T Consensus 157 ------~~~~~~~f~ri~~~ea~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~e~~L~~ 216 (335)
T PF00152_consen 157 ------NIDLPKPFPRITYEEAFEIYGGDKPDLRFDEELDDLAEIEELEFEVGRLLSEEVEPYLVE 216 (335)
T ss_dssp ------CEESSSS-EEEEHHHHHHHHHHTTTTTTTCHHHHHHHHHHHTTHHCHHHHHHHHHHHHHH
T ss_pred ------cccccCCceEeeehHHHHHhhcccccchhHHHHHHHHHHhcccchHHHHHHHHHHHHhhh
Confidence 23445689999999999999987755443 34577778877763
No 33
>TIGR00462 genX lysyl-tRNA synthetase-like protein GenX. Many Gram-negative bacteria have a protein closely homologous to the C-terminal region of lysyl-tRNA synthetase (LysS). Multiple sequence alignment of these proteins with the homologous regions of collected LysS proteins shows that these proteins form a distinct set rather than just similar truncations of LysS. The protein is termed GenX after its designation in E. coli. Interestingly, genX often is located near a homolog of lysine-2,3-aminomutase. Its function is unknown.
Probab=100.00 E-value=2.3e-41 Score=337.54 Aligned_cols=163 Identities=21% Similarity=0.306 Sum_probs=148.0
Q ss_pred HHHHHHHHHHHHHHhhcCCeEEeeCceeecc-CCCCCcceeEeccCC-----CceeeccChHHHHhhhccCCCceeEEEe
Q 013865 248 FRIQSQVGNIFRQFLLSENFVEIHTPKLIAG-SSEGGSAVFRLDYKG-----QSACLAQSPQLHKQMSICGDFGRVFETG 321 (435)
Q Consensus 248 ~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~-~~egga~~F~v~~~~-----~~~~L~~Spql~lq~~i~~g~~rVfeIg 321 (435)
+++||.|++++|+||.++||+||+||+|+++ .+|+|+++|+++||+ +++||+||||||+|+++++|++|||+||
T Consensus 1 l~~rs~i~~~ir~~f~~~gF~EV~TP~l~~~~~~e~~~~~F~~~y~~~~~~~~~~yL~~Spql~lk~ll~~g~~rVfeig 80 (304)
T TIGR00462 1 LRARARLLAAIRAFFAERGVLEVETPLLSPAPVTDPHLDAFATEFLGPDGEGRPLYLQTSPEYAMKRLLAAGSGPIFQIC 80 (304)
T ss_pred ChHHHHHHHHHHHHHHHCCCEEEECCeEecCCCCCcCCcceeeeccCCCCCCcceeeecCHHHHHHHHHhccCCCEEEEc
Confidence 4789999999999999999999999999987 588899999999876 6999999999999999999999999999
Q ss_pred cceecCCCCCCccccccccceeeeeccccHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhcCCCcccCCCCCCceeeHH
Q 013865 322 PVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFE 401 (435)
Q Consensus 322 p~FR~E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~rit~~ 401 (435)
||||||++ ++||||||||||||++|.+ |+|+|+++|+||++++..+ ..||+||||.
T Consensus 81 p~FRaE~~-~~rHl~EFtmLE~e~~~~d-~~d~m~~~e~li~~i~~~~----------------------~~~~~~it~~ 136 (304)
T TIGR00462 81 KVFRNGER-GRRHNPEFTMLEWYRPGFD-YHDLMDEVEALLQELLGDP----------------------FAPWERLSYQ 136 (304)
T ss_pred CceeCCCC-CCCcccHHHhHHHHHHcCC-HHHHHHHHHHHHHHHHHhc----------------------CCCcEEEEHH
Confidence 99999998 6899999999999999985 9999999999999998751 2467888888
Q ss_pred HHHH-----------------HHHHcCCCCCCCCCCCcHHHHHHHHHhhc
Q 013865 402 EGVQ-----------------MLKDAGVEIDPLGDLNTESERKLGQLVLE 434 (435)
Q Consensus 402 eai~-----------------lL~~~g~~~~~~~dl~te~E~~L~~~vke 434 (435)
||++ ++++.|+++++++|+++.+|+.|+++|+.
T Consensus 137 ea~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~~~e~~l~~~ie~ 186 (304)
T TIGR00462 137 EAFLRYAGIDPLTASLDELAAAAAAHGVRASEEDDRDDLLDLLFSEKVEP 186 (304)
T ss_pred HHHHHHhCCCcccCCHHHHHHHHHHcCCCCCCCCChhHHHHHHHHHHHHH
Confidence 8754 67788888888899999999999999864
No 34
>cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain. Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three characteristic sequence motifs in the core domain. It is found in eukaryotes as well as some prokaryotes and archaea. However, LysRS belongs to class I aaRS's in some prokaryotes and archaea. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=100.00 E-value=2.7e-40 Score=333.20 Aligned_cols=178 Identities=24% Similarity=0.370 Sum_probs=149.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCCCCCcceeEe--ccCCCceeeccChHHHHhhhccCCCceeEE
Q 013865 242 LANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRL--DYKGQSACLAQSPQLHKQMSICGDFGRVFE 319 (435)
Q Consensus 242 ~~~~~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~egga~~F~v--~~~~~~~~L~~Spql~lq~~i~~g~~rVfe 319 (435)
+.++++|++||.|+++||+||.++||+||+||+|+++.+++++.+|.+ +||+.++||+||||||+|+++++|++|||+
T Consensus 2 ~~~~~~l~~Rs~i~~~iR~ff~~~gf~EV~TP~L~~~~~~~~~~~f~~~~~~~~~~~yL~~Spql~~k~ll~~g~~~vf~ 81 (329)
T cd00775 2 EEVRQTFIVRSKIISYIRKFLDDRGFLEVETPMLQPIAGGAAARPFITHHNALDMDLYLRIAPELYLKRLIVGGFERVYE 81 (329)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCccccCCCCccceeEEeccCCCCcceeeccCHHHHHHHHHhcCCCcEEE
Confidence 578999999999999999999999999999999998766667789988 789999999999999999999999999999
Q ss_pred EecceecCCCCCCccccccccceeeeeccccHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhcCCCcccCCCCCCceee
Q 013865 320 TGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLT 399 (435)
Q Consensus 320 Igp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~rit 399 (435)
||||||||++ +.|||||||||||||+|++ |+|+|+++|+||+++++.+.+.+ ++... ...+.+..||+|||
T Consensus 82 i~~~FR~E~~-~~rHl~EFt~le~e~~~~~-~~~~m~~~e~li~~i~~~~~~~~--~~~~~-----~~~~~~~~pf~rit 152 (329)
T cd00775 82 IGRNFRNEGI-DLTHNPEFTMIEFYEAYAD-YNDMMDLTEDLFSGLVKKINGKT--KIEYG-----GKELDFTPPFKRVT 152 (329)
T ss_pred EeccccCCCC-CCCCCCceEEEEEeeecCC-HHHHHHHHHHHHHHHHHHHhCCc--eeecC-----CccccCCCCceEEE
Confidence 9999999998 6899999999999999985 99999999999999999887653 22222 12233446999999
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCcH-HHHHHHH
Q 013865 400 FEEGVQMLKDAGVEIDPLGDLNTE-SERKLGQ 430 (435)
Q Consensus 400 ~~eai~lL~~~g~~~~~~~dl~te-~E~~L~~ 430 (435)
|.||++. ..|+++.+.++..++ .++.++.
T Consensus 153 y~eA~~~--~~g~~~~~~~~~~~~~~~~~~~~ 182 (329)
T cd00775 153 MVDALKE--KTGIDFPELDLEQPEELAKLLAK 182 (329)
T ss_pred HHHHHHH--HhCCCcccccccCCHHHHHHHHH
Confidence 9999984 468776555555443 4444444
No 35
>cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain. This domain is the core catalytic domain of class II aminoacyl-tRNA synthetases of the subgroup containing aspartyl, lysyl, and asparaginyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. Nearly all class II tRNA synthetases are dimers and enzymes in this subgroup are homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=100.00 E-value=4e-37 Score=301.98 Aligned_cols=152 Identities=30% Similarity=0.474 Sum_probs=138.3
Q ss_pred HHHHHHHHHHHHHHhhcCCeEEeeCceeeccCCCCCcceeEeccC--CCceeeccChHHHHhhhccCCCceeEEEeccee
Q 013865 248 FRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYK--GQSACLAQSPQLHKQMSICGDFGRVFETGPVFR 325 (435)
Q Consensus 248 ~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~~--~~~~~L~~Spql~lq~~i~~g~~rVfeIgp~FR 325 (435)
|++||.|++.+|+||.++||+||+||+|+++.+++|+++|.++|+ |+++||++|||||+|+++++|++|||+||||||
T Consensus 1 ~~~rs~i~~~ir~~f~~~gf~ev~tP~l~~~~~~~~~~~f~~~~~~~g~~~~L~~Spql~~~~~~~~~~~~vf~i~~~fR 80 (269)
T cd00669 1 FKVRSKIIKAIRDFMDDRGFLEVETPMLQKITGGAGARPFLVKYNALGLDYYLRISPQLFKKRLMVGGLDRVFEINRNFR 80 (269)
T ss_pred CcHHHHHHHHHHHHHHHCCCEEEECCEEeccCCccccceEEeeecCCCCcEEeecCHHHHHHHHHhcCCCcEEEEeccee
Confidence 579999999999999999999999999998889999999999998 999999999999999999999999999999999
Q ss_pred cCCCCCCccccccccceeeeeccccHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhcCCCcccCCCCCCceeeHHHHHH
Q 013865 326 AEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQ 405 (435)
Q Consensus 326 ~E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~rit~~eai~ 405 (435)
+| +.|.||++||||||+||+|. +|+|+|+++|+||+++++.+.+++..++.. ...++..||+||||.||++
T Consensus 81 ~e-~~~~~hl~EF~~le~e~~~~-~~~dvm~~~e~lv~~i~~~~~~~~~~~~~~-------~~~~~~~~~~rit~~ea~~ 151 (269)
T cd00669 81 NE-DLRARHQPEFTMMDLEMAFA-DYEDVIELTERLVRHLAREVLGVTAVTYGF-------ELEDFGLPFPRLTYREALE 151 (269)
T ss_pred CC-CCCCCcccceeEEEEEEecC-CHHHHHHHHHHHHHHHHHHHhccccccccc-------cccccCCCceEeeHHHHHH
Confidence 99 57999999999999999999 499999999999999999998877665421 1223457999999999999
Q ss_pred HHH
Q 013865 406 MLK 408 (435)
Q Consensus 406 lL~ 408 (435)
+|.
T Consensus 152 ~~~ 154 (269)
T cd00669 152 RYG 154 (269)
T ss_pred HhC
Confidence 885
No 36
>cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain.
Probab=100.00 E-value=5.4e-36 Score=295.58 Aligned_cols=151 Identities=32% Similarity=0.514 Sum_probs=131.4
Q ss_pred HHHHHHHHHHHHHHhhcCCeEEeeCceeeccCCCCCcceeEeccC---CCceeeccChHHHHhhhccCCCceeEEEecce
Q 013865 248 FRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYK---GQSACLAQSPQLHKQMSICGDFGRVFETGPVF 324 (435)
Q Consensus 248 ~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~~---~~~~~L~~Spql~lq~~i~~g~~rVfeIgp~F 324 (435)
+++||.|+++||+||.++||+||+||+|++++++|+ .+|.+.|+ +..+||+||||||||+++++|++|||+|||||
T Consensus 1 l~~Rs~i~~~iR~f~~~~gfiEV~TP~L~~~~~~g~-~~f~~~~~~~~~~~~~L~~Spql~lk~ll~~g~~~v~~i~~~f 79 (280)
T cd00777 1 LRLRSRVIKAIRNFLDEQGFVEIETPILTKSTPEGA-RDFLVPSRLHPGKFYALPQSPQLFKQLLMVSGFDRYFQIARCF 79 (280)
T ss_pred CchHHHHHHHHHHHHHHCCCEEEeCCeeecCCCCCC-CCceeccccCCCceeecccCHHHHHHHHHhcCcCcEEEeccce
Confidence 478999999999999999999999999998888755 55998885 45566999999999999999999999999999
Q ss_pred ecCCCCCCccccccccceeeeeccccHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhcCCCcccCCCCCCceeeHHHHH
Q 013865 325 RAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGV 404 (435)
Q Consensus 325 R~E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~rit~~eai 404 (435)
|+|++++.||+ ||||||||++|.+ |+|+|+++|+||++++..+.+. .+..||+||||.||+
T Consensus 80 R~e~~~~~r~~-Ef~~~e~e~~~~~-~~dlm~~~e~li~~i~~~~~~~-----------------~~~~p~~rity~eA~ 140 (280)
T cd00777 80 RDEDLRADRQP-EFTQIDIEMSFVD-QEDIMSLIEGLLKYVFKEVLGV-----------------ELTTPFPRMTYAEAM 140 (280)
T ss_pred eCCCCCCCccc-eeEEeEeeeccCC-HHHHHHHHHHHHHHHHHHHhCC-----------------CCCCCCceeeHHHHH
Confidence 99999887775 9999999999995 9999999999999999877532 124689999999999
Q ss_pred HHHHHcCCCCCCCCCCC
Q 013865 405 QMLKDAGVEIDPLGDLN 421 (435)
Q Consensus 405 ~lL~~~g~~~~~~~dl~ 421 (435)
+. .|.++.|+.|+.
T Consensus 141 ~~---~~~~~~~~~d~~ 154 (280)
T cd00777 141 ER---YGFKFLWIVDFP 154 (280)
T ss_pred HH---hCCCCccccCCc
Confidence 84 466667777764
No 37
>PRK09350 poxB regulator PoxA; Provisional
Probab=100.00 E-value=9.9e-34 Score=282.88 Aligned_cols=163 Identities=20% Similarity=0.259 Sum_probs=136.2
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCC-CCCcceeEeccC------CCceeeccChHHHHhhhccCCCcee
Q 013865 245 QGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS-EGGSAVFRLDYK------GQSACLAQSPQLHKQMSICGDFGRV 317 (435)
Q Consensus 245 ~~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~-egga~~F~v~~~------~~~~~L~~Spql~lq~~i~~g~~rV 317 (435)
..+|++|+.|++.||+||.++||+||+||+|+.... +....+|.++|+ |+.+||+||||+|+|+++++|++||
T Consensus 2 ~~~l~~r~~i~~~ir~~f~~~gf~EV~TP~l~~~~~~~~~~~~f~~~y~~~~~~~~~~~~L~~SPe~~~kr~la~~~~rv 81 (306)
T PRK09350 2 IPNLLKRAKIIAEIRRFFADRGVLEVETPILSQATVTDIHLVPFETRFVGPGASQGKTLWLMTSPEYHMKRLLAAGSGPI 81 (306)
T ss_pred hHHHHHHHHHHHHHHHHHHHCCCEEEECCeEecccCCCccCCceeeeeccccccCCcceEEecCHHHHHHHHhhccccce
Confidence 468999999999999999999999999999986543 234457999887 7999999999999999999999999
Q ss_pred EEEecceecCCCCCCccccccccceeeeeccccHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhcCCCcccCCCCCCce
Q 013865 318 FETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLR 397 (435)
Q Consensus 318 feIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~r 397 (435)
|+||||||||++ |.||++||||||||++|.+ |+|+|+++|+||++++.. .||++
T Consensus 82 f~i~~~FR~e~~-~~~H~~EFt~lE~y~~~~d-~~dlm~~~E~li~~i~~~------------------------~~~~~ 135 (306)
T PRK09350 82 FQICKSFRNEEA-GRYHNPEFTMLEWYRPHYD-MYRLMNEVDDLLQQVLDC------------------------EPAES 135 (306)
T ss_pred EEecceeecCCC-CCCCCcHHHhhhhhhhCCC-HHHHHHHHHHHHHHHHhc------------------------CCceE
Confidence 999999999998 9999999999999999995 999999999999998752 24566
Q ss_pred eeHHHHH-----------------HHHHHcCC--CCCCCCCCCcHHHHHHHHHhh
Q 013865 398 LTFEEGV-----------------QMLKDAGV--EIDPLGDLNTESERKLGQLVL 433 (435)
Q Consensus 398 it~~eai-----------------~lL~~~g~--~~~~~~dl~te~E~~L~~~vk 433 (435)
|||.||+ +++.+.|. ..++.+|+.+..++.++.+|.
T Consensus 136 i~~~eaf~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~ve 190 (306)
T PRK09350 136 LSYQQAFLRYLGIDPLSADKTQLREVAAKLGLSNIADEEEDRDTLLQLLFTFGVE 190 (306)
T ss_pred EEHHHHHHHHhCCCCCcCCHHHHHHHHHHcCCCCcCCCCCCHHHHHHHHHHHHHH
Confidence 6666654 44455565 334556777777777777764
No 38
>COG2269 Truncated, possibly inactive, lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=1.9e-27 Score=228.36 Aligned_cols=141 Identities=23% Similarity=0.382 Sum_probs=122.4
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccC-CCCCcceeEeccCC------CceeeccChHHHHhhhccCCCceeE
Q 013865 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS-SEGGSAVFRLDYKG------QSACLAQSPQLHKQMSICGDFGRVF 318 (435)
Q Consensus 246 ~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~-~egga~~F~v~~~~------~~~~L~~Spql~lq~~i~~g~~rVf 318 (435)
..+..|+.|++.||.||.++||+||+||.|+.+. +|..-.+|.+.|++ .++||+.|||+++|.|+++|-+++|
T Consensus 14 ~~ll~Ra~i~~~iR~FF~erg~lEVeTp~Ls~a~vtd~hL~~F~Te~~~~~~~~~~~l~L~TSPEy~mKrLLAag~~~if 93 (322)
T COG2269 14 DNLLKRAAIIAAIRRFFAERGVLEVETPALSVAPVTDIHLHPFETEFLGPGGAKGKPLWLHTSPEYHMKRLLAAGSGPIF 93 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHcCceEecchHhhcCCCCccceeeeeeEEeccCccccceeeeecCcHHHHHHHHHccCCcch
Confidence 3478899999999999999999999999998654 45556689998853 7899999999999999999999999
Q ss_pred EEecceecCCCCCCccccccccceeeeeccccHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhcCCCcccCCCCCCcee
Q 013865 319 ETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRL 398 (435)
Q Consensus 319 eIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~ri 398 (435)
+||+||||+. .+.+|+|||||||||..+.+ |+-+|+.+.+|+..++... ++.++
T Consensus 94 ql~kvfRN~E-~G~~H~PEFTMLEWYrv~~d-~~~lm~e~~~Ll~~vl~~~------------------------~~E~l 147 (322)
T COG2269 94 QLGKVFRNEE-MGRLHNPEFTMLEWYRVGCD-YYRLMNEVDDLLQLVLECV------------------------EAERL 147 (322)
T ss_pred hhhHHHhccc-ccccCCCceeEeeeeccCCc-HHHHHHHHHHHHHHHHccC------------------------Cccee
Confidence 9999999999 59999999999999999996 9999999999998887542 35788
Q ss_pred eHHHHHHHHHHcCCCC
Q 013865 399 TFEEGVQMLKDAGVEI 414 (435)
Q Consensus 399 t~~eai~lL~~~g~~~ 414 (435)
||.||+. +-.|+++
T Consensus 148 s~~eaF~--r~~gid~ 161 (322)
T COG2269 148 SYQEAFL--RYLGIDP 161 (322)
T ss_pred eHHHHHH--HHhCCCc
Confidence 8888875 5566553
No 39
>cd04317 EcAspRS_like_N EcAspRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli aspartyl-tRNA synthetase (AspRS), the human mitochondrial (mt) AspRS-2, the discriminating (D) Thermus thermophilus AspRS-1, and the nondiscriminating (ND) Helicobacter pylori AspRS. These homodimeric enzymes are class2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic synthesis, wh
Probab=99.91 E-value=1.1e-23 Score=186.35 Aligned_cols=128 Identities=30% Similarity=0.435 Sum_probs=104.1
Q ss_pred EeccccCCCCCCEEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCC
Q 013865 94 VVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPD 173 (435)
Q Consensus 94 ~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~ 173 (435)
.++++.....|+.|+|+|||+++|.+| +++|++|||+++.+|||+..+.. .+ ++++..|+.||+|.|+|++..++
T Consensus 4 ~~~~~~~~~~g~~V~i~Gwv~~~R~~g-k~~Fi~LrD~~g~~Q~v~~~~~~---~~-~~~~~~l~~gs~V~V~G~~~~~~ 78 (135)
T cd04317 4 YCGELRESHVGQEVTLCGWVQRRRDHG-GLIFIDLRDRYGIVQVVFDPEEA---PE-FELAEKLRNESVIQVTGKVRARP 78 (135)
T ss_pred ehhhCChhHCCCEEEEEEeEehhcccC-CEEEEEEecCCeeEEEEEeCCch---hH-HHHHhCCCCccEEEEEEEEECCC
Confidence 355666667799999999999999999 69999999999999999975421 22 57788999999999999998643
Q ss_pred c-cc--CCCceeEEEEEeEEEEeecCCCCCcccccccchHHHHHhhhhcCCCCCCCCccccccccccccccHH
Q 013865 174 V-EI--KGATQQVEVQIKKLYCVSRAAKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLA 243 (435)
Q Consensus 174 ~-~~--~~~t~~lEi~v~~i~vls~~~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~etrl~~R~Ldlr~~~ 243 (435)
. ++ .+.++++||++++|.+|++|.++|+..++.. ..+.++|++|||||||++.
T Consensus 79 ~~~~~~~~~~~~~El~~~~i~vl~~~~~lP~~~~~~~-----------------~~~~~~r~~~R~LdLR~~~ 134 (135)
T cd04317 79 EGTVNPKLPTGEIEVVASELEVLNKAKTLPFEIDDDV-----------------NVSEELRLKYRYLDLRRPK 134 (135)
T ss_pred ccccCCCCCCCcEEEEEeEEEEEECCCCCCCcccccc-----------------CCCHHHhhhcceeecCCCC
Confidence 2 11 1234679999999999999988999876531 2678999999999999863
No 40
>cd04322 LysRS_N LysRS_N: N-terminal, anticodon recognition domain of lysyl-tRNA synthetases (LysRS). These enzymes are homodimeric class 2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Included in this group are E. coli LysS and LysU. These two isoforms of LysRS are encoded by distinct genes which are differently regulated. Eukaryotes contain 2 sets of aaRSs, both of which encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein
Probab=99.88 E-value=3.9e-22 Score=169.99 Aligned_cols=107 Identities=22% Similarity=0.362 Sum_probs=90.3
Q ss_pred EEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCcccCCCceeEEE
Q 013865 106 EVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEV 185 (435)
Q Consensus 106 ~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~~~~~~t~~lEi 185 (435)
+|+|+|||+++|.+| +++|++|||+++.||||++.+.. .+..|.++.+.|+.||+|.|+|++..++ ++++||
T Consensus 1 ~v~v~GwV~~~R~~g-~~~Fi~lrd~~~~lQ~v~~~~~~-~~~~~~~~~~~l~~g~~V~v~G~v~~~~------~g~~El 72 (108)
T cd04322 1 EVSVAGRIMSKRGSG-KLSFADLQDESGKIQVYVNKDDL-GEEEFEDFKKLLDLGDIIGVTGTPFKTK------TGELSI 72 (108)
T ss_pred CEEEEEEEEEEecCC-CeEEEEEEECCeEEEEEEECCCC-CHHHHHHHHhcCCCCCEEEEEEEEEecC------CCCEEE
Confidence 489999999999999 69999999999999999976532 2345556666699999999999998754 267999
Q ss_pred EEeEEEEeecC-CCCCcccccccchHHHHHhhhhcCCCCCCCCcccccccccccc
Q 013865 186 QIKKLYCVSRA-AKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDI 239 (435)
Q Consensus 186 ~v~~i~vls~~-~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~etrl~~R~Ldl 239 (435)
+++++++||+| .+||+...+ ..+.++|+++|||||
T Consensus 73 ~~~~~~ils~~~~plP~~~~~-------------------~~~~~~r~~~R~ldl 108 (108)
T cd04322 73 FVKEFTLLSKSLRPLPEKFHG-------------------LTDVETRYRQRYLDL 108 (108)
T ss_pred EeCEeEEeeccCCCCCCCccC-------------------cCChhheeecccccC
Confidence 99999999999 899986543 257899999999996
No 41
>cd04320 AspRS_cyto_N AspRS_cyto_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces cerevisiae and human cytoplasmic aspartyl-tRNA synthetase (AspRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis.
Probab=99.84 E-value=5.3e-20 Score=155.21 Aligned_cols=100 Identities=50% Similarity=0.734 Sum_probs=85.7
Q ss_pred EEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCcccCCC-ceeEE
Q 013865 106 EVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGA-TQQVE 184 (435)
Q Consensus 106 ~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~~~~~~-t~~lE 184 (435)
.|+|+|||+++|.+|++++|++|||+++.||||+..+....+++|+++++.|+.||+|.|+|++..++++++++ ++++|
T Consensus 1 ~V~i~Gwv~~~R~~g~k~~Fi~LrD~sg~iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~~~~~~E 80 (102)
T cd04320 1 EVLIRARVHTSRAQGAKLAFLVLRQQGYTIQGVLAASAEGVSKQMVKWAGSLSKESIVDVEGTVKKPEEPIKSCTQQDVE 80 (102)
T ss_pred CEEEEEEEEEeecCCCceEEEEEecCCceEEEEEeCCcccCCHHHHHHHhcCCCccEEEEEEEEECCCCcccCCCcCcEE
Confidence 48999999999999989999999999999999998653224678889999999999999999998866554443 37899
Q ss_pred EEEeEEEEeecC-CCCCccccc
Q 013865 185 VQIKKLYCVSRA-AKTPITIED 205 (435)
Q Consensus 185 i~v~~i~vls~~-~~lP~~~~d 205 (435)
|++++|++|++| .+||++..|
T Consensus 81 l~~~~i~il~~~~~~~P~~~~d 102 (102)
T cd04320 81 LHIEKIYVVSEAAEPLPFQLED 102 (102)
T ss_pred EEEEEEEEEecCCCCCCCCCCC
Confidence 999999999999 889997653
No 42
>cd04316 ND_PkAspRS_like_N ND_PkAspRS_like_N: N-terminal, anticodon recognition domain of the type found in the homodimeric non-discriminating (ND) Pyrococcus kodakaraensis aspartyl-tRNA synthetase (AspRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. P. kodakaraensis AspRS is a class 2b aaRS. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. P. kodakaraensis ND-AspRS can charge both tRNAAsp and tRNAAsn. Some of the enzymes in this group may be discriminating, based on the presence of homologs of asparaginyl-tRNA synthetase (AsnRS) in their completed genomes.
Probab=99.81 E-value=3.3e-19 Score=152.03 Aligned_cols=103 Identities=32% Similarity=0.486 Sum_probs=89.0
Q ss_pred eccccCCCCCCEEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCc
Q 013865 95 VGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDV 174 (435)
Q Consensus 95 i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~ 174 (435)
++++.....|++|+|+|||+++|.+| +++|++|||+++.+|||+..+ ..++++++++..|+.||+|.|+|++...+.
T Consensus 3 ~~~l~~~~~g~~V~v~Gwv~~~R~~g-~~~Fi~LrD~~g~iQ~v~~~~--~~~~~~~~~~~~l~~es~V~V~G~v~~~~~ 79 (108)
T cd04316 3 SAEITPELDGEEVTVAGWVHEIRDLG-GIKFVILRDREGIVQVTAPKK--KVDKELFKTVRKLSRESVISVTGTVKAEPK 79 (108)
T ss_pred hhhCchhhCCCEEEEEEEEEeeeccC-CeEEEEEecCCeeEEEEEeCC--CCCHHHHHHHhCCCCcCEEEEEEEEEeCCC
Confidence 45666667899999999999999999 799999999999999999843 246788999999999999999999987543
Q ss_pred ccCCCceeEEEEEeEEEEeecC-CCCCcccc
Q 013865 175 EIKGATQQVEVQIKKLYCVSRA-AKTPITIE 204 (435)
Q Consensus 175 ~~~~~t~~lEi~v~~i~vls~~-~~lP~~~~ 204 (435)
+ .+++||+++++.+|++| .+||++..
T Consensus 80 ~----~~~~Ei~~~~i~il~~~~~~~P~~~~ 106 (108)
T cd04316 80 A----PNGVEIIPEEIEVLSEAKTPLPLDPT 106 (108)
T ss_pred C----CCCEEEEEeEEEEEeCCCCCCCcCcC
Confidence 2 25799999999999999 89998754
No 43
>cd04319 PhAsnRS_like_N PhAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Pyrococcus horikoshii AsnRS asparaginyl-tRNA synthetase (AsnRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The archeal enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose.
Probab=99.81 E-value=4e-19 Score=150.23 Aligned_cols=103 Identities=29% Similarity=0.346 Sum_probs=87.6
Q ss_pred EEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCcccCCCceeEEE
Q 013865 106 EVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEV 185 (435)
Q Consensus 106 ~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~~~~~~t~~lEi 185 (435)
+|+|+|||+++|.+| |++|++|||+++.+|||+..+ .++++++.+..|+.||+|.|+|++...+.+ .+++||
T Consensus 1 ~V~v~Gwv~~~R~~g-k~~Fi~lrD~~g~iQ~v~~~~---~~~~~~~~~~~l~~~s~v~V~G~v~~~~~~----~~~~Ei 72 (103)
T cd04319 1 KVTLAGWVYRKREVG-KKAFIVLRDSTGIVQAVFSKD---LNEEAYREAKKVGIESSVIVEGAVKADPRA----PGGAEV 72 (103)
T ss_pred CEEEEEEEEeEEcCC-CeEEEEEecCCeeEEEEEeCC---CCHHHHHHHhCCCCCCEEEEEEEEEECCCC----CCCEEE
Confidence 489999999999999 789999999999999999754 356777778899999999999999875432 246999
Q ss_pred EEeEEEEeecCCCCCcccccccchHHHHHhhhhcCCCCCCCCcccccccccc
Q 013865 186 QIKKLYCVSRAAKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVI 237 (435)
Q Consensus 186 ~v~~i~vls~~~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~etrl~~R~L 237 (435)
++++|.+|++|.++|++.+ .+.++|+++|||
T Consensus 73 ~~~~i~vl~~a~~~pi~~~---------------------~~~~~~~~~rhL 103 (103)
T cd04319 73 HGEKLEIIQNVEFFPITED---------------------ASDEFLLDVRHL 103 (103)
T ss_pred EEEEEEEEecCCCCccCCC---------------------CCHHHHhhccCC
Confidence 9999999999977887622 267899999997
No 44
>cd04100 Asp_Lys_Asn_RS_N Asp_Lys_Asn_RS_N: N-terminal, anticodon recognition domain of class 2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. Class 2b aaRSs include the homodimeric aspartyl-, asparaginyl-, and lysyl-tRNA synthetases (AspRS, AsnRS, and LysRS). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. Included in this group are archeal and archeal-like A
Probab=99.68 E-value=4.3e-16 Score=126.99 Aligned_cols=85 Identities=31% Similarity=0.381 Sum_probs=72.8
Q ss_pred EEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCcccCCCceeEEE
Q 013865 106 EVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEV 185 (435)
Q Consensus 106 ~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~~~~~~t~~lEi 185 (435)
.|+|+|||+++|.+| +++|++|||+++.+|++++.+. ..+|++++..|+.||+|.|+|++..++.+. ++++++||
T Consensus 1 ~V~i~Gwv~~~R~~g-~~~Fi~Lrd~~~~iQ~v~~~~~---~~~~~~~~~~l~~~s~V~v~G~~~~~~~~~-~~~~~~El 75 (85)
T cd04100 1 EVTLAGWVHSRRDHG-GLIFIDLRDGSGIVQVVVNKEE---LGEFFEEAEKLRTESVVGVTGTVVKRPEGN-LATGEIEL 75 (85)
T ss_pred CEEEEEEEehhccCC-CEEEEEEEeCCeeEEEEEECCc---ChHHHHHHhCCCCCCEEEEEeEEEECCCCC-CCCCCEEE
Confidence 389999999999999 6999999999999999998643 233788899999999999999998765433 45678999
Q ss_pred EEeEEEEeec
Q 013865 186 QIKKLYCVSR 195 (435)
Q Consensus 186 ~v~~i~vls~ 195 (435)
+++++++|++
T Consensus 76 ~~~~i~il~~ 85 (85)
T cd04100 76 QAEELEVLSK 85 (85)
T ss_pred EEeEEEEECC
Confidence 9999999975
No 45
>cd04323 AsnRS_cyto_like_N AsnRS_cyto_like_N: N-terminal, anticodon recognition domain of the type found in human and Saccharomyces cerevisiae cytoplasmic asparaginyl-tRNA synthetase (AsnRS), in Brugia malayai AsnRs and, in various putative bacterial AsnRSs. This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic synthesis, whereas the other exclusively with
Probab=99.64 E-value=3.1e-15 Score=121.77 Aligned_cols=84 Identities=31% Similarity=0.368 Sum_probs=70.0
Q ss_pred EEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCcccCCCceeEEE
Q 013865 106 EVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEV 185 (435)
Q Consensus 106 ~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~~~~~~t~~lEi 185 (435)
.|+|+|||+++|.+| +++|++|||+++.+|+++..+.. + . +++++.|+.||+|.|+|++..++.+. ...+++||
T Consensus 1 ~V~v~Gwv~~~R~~g-~~~Fi~LrD~~~~iQ~v~~~~~~--~-~-~~~~~~l~~es~V~V~G~v~~~~~~~-~~~~~~Ei 74 (84)
T cd04323 1 RVKVFGWVHRLRSQK-KLMFLVLRDGTGFLQCVLSKKLV--T-E-FYDAKSLTQESSVEVTGEVKEDPRAK-QAPGGYEL 74 (84)
T ss_pred CEEEEEEEEEEecCC-CcEEEEEEcCCeEEEEEEcCCcc--h-h-HHHHhcCCCcCEEEEEEEEEECCccc-CCCCCEEE
Confidence 489999999999998 89999999999999999975421 2 2 57788999999999999998765443 22367999
Q ss_pred EEeEEEEeec
Q 013865 186 QIKKLYCVSR 195 (435)
Q Consensus 186 ~v~~i~vls~ 195 (435)
+++++++|+.
T Consensus 75 ~~~~i~vl~~ 84 (84)
T cd04323 75 QVDYLEIIGE 84 (84)
T ss_pred EEEEEEEEcC
Confidence 9999999974
No 46
>cd04321 ScAspRS_mt_like_N ScAspRS_mt_like_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces cerevisiae mitochondrial (mt) aspartyl-tRNA synthetase (AspRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this fungal group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. Mutations in the gene for
Probab=99.58 E-value=2.5e-14 Score=117.14 Aligned_cols=85 Identities=20% Similarity=0.361 Sum_probs=68.0
Q ss_pred EEEEEEEEeeeecCCCceEEEEEEeCCe-EEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCcccCCCceeEE
Q 013865 106 EVLIRGRVHTTRPVGNKLAFVVVRERVS-TVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVE 184 (435)
Q Consensus 106 ~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~-~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~~~~~~t~~lE 184 (435)
+|+|+|||+++|..+++++|++|||+++ .+||+++.+ .+.++.+..|+.||+|.|+|++...+......++++|
T Consensus 1 ~V~v~Gwv~~~R~~~~~~~Fi~LrD~~g~~iQvv~~~~-----~~~~~~~~~l~~~s~V~V~G~v~~~~~~~~~~~~~~E 75 (86)
T cd04321 1 KVTLNGWIDRKPRIVKKLSFADLRDPNGDIIQLVSTAK-----KDAFSLLKSITAESPVQVRGKLQLKEAKSSEKNDEWE 75 (86)
T ss_pred CEEEEEeEeeEeCCCCceEEEEEECCCCCEEEEEECCC-----HHHHHHHhcCCCCcEEEEEEEEEeCCCcCCCCCCCEE
Confidence 4899999999999544899999999999 699998643 1344556789999999999999875432223347899
Q ss_pred EEEeEEEEeec
Q 013865 185 VQIKKLYCVSR 195 (435)
Q Consensus 185 i~v~~i~vls~ 195 (435)
|.+++|.+|++
T Consensus 76 i~~~~i~il~~ 86 (86)
T cd04321 76 LVVDDIQTLNA 86 (86)
T ss_pred EEEEEEEEecC
Confidence 99999999974
No 47
>cd04318 EcAsnRS_like_N EcAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli asparaginyl-tRNA synthetase (AsnRS) and, in Arabidopsis thaliana and Saccharomyces cerevisiae mitochondrial (mt) AsnRS. This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial
Probab=99.56 E-value=3.4e-14 Score=115.03 Aligned_cols=79 Identities=23% Similarity=0.325 Sum_probs=66.9
Q ss_pred EEEEEEEEeeeecCCCceEEEEEEeCCe--EEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCcccCCCceeE
Q 013865 106 EVLIRGRVHTTRPVGNKLAFVVVRERVS--TVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQV 183 (435)
Q Consensus 106 ~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~--~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~~~~~~t~~l 183 (435)
.|+|+|||+++|.+| +++|++|||+++ .|||+++.+.. . ++++..|+.||+|.|+|.+..++.+ .+++
T Consensus 1 ~v~v~Gwv~~~R~~g-~~~Fi~LrD~s~~~~lQvv~~~~~~--~---~~~~~~l~~gs~V~v~G~v~~~~~~----~~~~ 70 (82)
T cd04318 1 EVTVNGWVRSVRDSK-KISFIELNDGSCLKNLQVVVDKELT--N---FKEILKLSTGSSIRVEGVLVKSPGA----KQPF 70 (82)
T ss_pred CEEEEEeEEEEEcCC-cEEEEEEECCCCccCEEEEEeCccc--C---HHHHhcCCCceEEEEEEEEEeCCCC----CCCE
Confidence 389999999999998 899999999987 59999986422 1 4677889999999999999875532 3689
Q ss_pred EEEEeEEEEee
Q 013865 184 EVQIKKLYCVS 194 (435)
Q Consensus 184 Ei~v~~i~vls 194 (435)
||+++++.+++
T Consensus 71 El~~~~i~il~ 81 (82)
T cd04318 71 ELQAEKIEVLG 81 (82)
T ss_pred EEEEEEEEEec
Confidence 99999999986
No 48
>PRK09537 pylS pyrolysyl-tRNA synthetase; Reviewed
Probab=99.44 E-value=3.1e-13 Score=139.27 Aligned_cols=136 Identities=21% Similarity=0.344 Sum_probs=102.7
Q ss_pred CCCccccccccccccccHHHHHHHHH-----HHHHHHHHHHHhhcCCeEEeeCceeeccC------CCCCcce-eEeccC
Q 013865 225 RVNQDTRLNNRVIDIRTLANQGIFRI-----QSQVGNIFRQFLLSENFVEIHTPKLIAGS------SEGGSAV-FRLDYK 292 (435)
Q Consensus 225 ~~~~etrl~~R~Ldlr~~~~~~i~~~-----rs~i~~~~r~fl~~~gF~EV~TP~l~~~~------~egga~~-F~v~~~ 292 (435)
..++|+||++| |.+..+++|.+ .+.+.+++|+||...||.||.||.|+... ..+|... ..+.++
T Consensus 179 ~~~~e~~l~~r----r~~~~~~~~~~g~~~~~s~Le~aIR~~f~~~GF~EV~TPtLt~ee~~e~~g~~~g~~i~~~my~i 254 (417)
T PRK09537 179 FKELESELVSR----RKNDLKQMYEEDREDYLGKLERDITKFFVDRGFLEIKSPILIPAEYIERMGIDNDTELSKQIFRV 254 (417)
T ss_pred hhhHHHHHHHh----cchhhHHhhccCCCCHHHHHHHHHHHHHHHCCCEEEECCeeecHHHHHHhCCCCcccchhhheee
Confidence 36789999999 88999999999 99999999999999999999999997432 1112110 111124
Q ss_pred CCceeec--cChHHHHhhhc----cCCCceeEEEecceecCCCCCCccccccccceeeeeccc-cHHHHHHHHHHHHHHH
Q 013865 293 GQSACLA--QSPQLHKQMSI----CGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKK-HYSEVMDIVDRLFVTI 365 (435)
Q Consensus 293 ~~~~~L~--~Spql~lq~~i----~~g~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~-~~~d~m~~~e~li~~i 365 (435)
+...+|| ..|.|+..... ...--|+|+||+|||+|.. +.+|++||+|+++++...+ .+.|++.++++++..+
T Consensus 255 deel~LRpsLtPsLlr~la~n~k~~~~P~RIFEIG~VFR~E~~-g~~hlrEf~Ql~~~iiGs~~~f~dL~~lleeLL~~L 333 (417)
T PRK09537 255 DKNFCLRPMLAPGLYNYLRKLDRILPDPIKIFEIGPCYRKESD-GKEHLEEFTMVNFCQMGSGCTRENLENIIDDFLKHL 333 (417)
T ss_pred CCceEehhhhHHHHHHHHHhhhhcccCCeeEEEEeceEecCCC-CCCCcceEEEEEEEEeCCchHHHHHHHHHHHHHHHC
Confidence 6789999 78999876321 1112489999999999985 7889999999999988642 3667776666666654
No 49
>cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. These enzymes are usually homodimers. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. The substrate specificity of this reaction is further determined by additional domains. Intererestingly, this domain is also found is asparagine synthase A (AsnA), in the accessory subunit of mitochondrial polymerase gamma and in the bacterial ATP phosphoribosyltransferase regulatory subunit HisZ.
Probab=99.17 E-value=5.8e-11 Score=110.58 Aligned_cols=115 Identities=23% Similarity=0.328 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHhhcCCeEEeeCceeeccC-CCC-C-c--ceeE-eccCCCceeeccChHHHHhhhccC----CCceeEE
Q 013865 250 IQSQVGNIFRQFLLSENFVEIHTPKLIAGS-SEG-G-S--AVFR-LDYKGQSACLAQSPQLHKQMSICG----DFGRVFE 319 (435)
Q Consensus 250 ~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~-~eg-g-a--~~F~-v~~~~~~~~L~~Spql~lq~~i~~----g~~rVfe 319 (435)
+|+.+.+.+|++|...||.||.||.|+... .+. | . .... .+..+...+||.|+...+...+.. .--|+||
T Consensus 1 ~~~~~~~~~r~~l~~~Gf~Ev~t~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~LR~s~~~~l~~~~~~n~~~~~~~lfe 80 (211)
T cd00768 1 IRSKIEQKLRRFMAELGFQEVETPIVEREPLLEKAGHEPKDLLPVGAENEEDLYLRPTLEPGLVRLFVSHIRKLPLRLAE 80 (211)
T ss_pred CHHHHHHHHHHHHHHcCCEEeEcceecHHHHHHHcCccHhheeeeecCCCCEEEECCCCcHHHHHHHHhhcccCCEEEEE
Confidence 367899999999999999999999997642 111 1 1 1222 234677899999999999877654 3469999
Q ss_pred EecceecCCCCCC--ccccccccceeeeecccc-----HHHHHHHHHHHHHHH
Q 013865 320 TGPVFRAEDSYTH--RHLCEFTGLDVEMEIKKH-----YSEVMDIVDRLFVTI 365 (435)
Q Consensus 320 Igp~FR~E~s~t~--rHl~EFt~lE~e~a~~~~-----~~d~m~~~e~li~~i 365 (435)
||+|||+|.+ +. +|+.||+|+++++..... +.+++.++++++..+
T Consensus 81 ig~vfr~e~~-~~~~~~~~ef~~l~~~~~g~~~~~~~~~~~~~~~~~~~l~~l 132 (211)
T cd00768 81 IGPAFRNEGG-RRGLRRVREFTQLEGEVFGEDGEEASEFEELIELTEELLRAL 132 (211)
T ss_pred EcceeecCCC-ccccccceeEEEcCEEEEcCCchhHHHHHHHHHHHHHHHHHc
Confidence 9999999975 43 789999999999998642 567888888887655
No 50
>PF01336 tRNA_anti-codon: OB-fold nucleic acid binding domain; InterPro: IPR004365 The OB-fold (oligonucleotide/oligosaccharide-binding fold) is found in all three kingdoms and its common architecture presents a binding face that has adapted to bind different ligands. The OB-fold is a five/six-stranded closed beta-barrel formed by 70-80 amino acid residues. The strands are connected by loops of varying length which form the functional appendages of the protein. The majority of OB-fold proteins use the same face for ligand binding or as an active site. Different OB-fold proteins use this 'fold-related binding face' to, variously, bind oligosaccharides, oligonucleotides, proteins, metal ions and catalytic substrates. This entry contains OB-fold domains that bind to nucleic acids []. It includes the anti-codon binding domain of lysyl, aspartyl, and asparaginyl-tRNA synthetases (See IPR004364 from INTERPRO). Aminoacyl-tRNA synthetases catalyse the addition of an amino acid to the appropriate tRNA molecule 6.1.1 from EC. This domain is found in RecG helicase involved in DNA repair. Replication factor A is a heterotrimeric complex, that contains a subunit in this family [, ]. This domain is also found at the C terminus of bacterial DNA polymerase III alpha chain.; GO: 0003676 nucleic acid binding; PDB: 1BBU_A 1KRS_A 1BBW_A 1KRT_A 1EQR_B 1IL2_B 1C0A_A 3KFU_A 1EOV_A 1ASY_A ....
Probab=98.99 E-value=6.5e-09 Score=81.44 Aligned_cols=75 Identities=27% Similarity=0.415 Sum_probs=63.1
Q ss_pred EEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCcccCCCceeEEEE
Q 013865 107 VLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQ 186 (435)
Q Consensus 107 V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~~~~~~t~~lEi~ 186 (435)
|+|.|||.+++..|++++|+.|+|+++.|||++.. ..+..+...|..|++|.|.|.+.... .++++|.
T Consensus 1 V~v~G~V~~~~~~~~~~~~~~l~D~tg~i~~~~~~------~~~~~~~~~l~~g~~v~v~G~v~~~~------~~~~~l~ 68 (75)
T PF01336_consen 1 VTVEGRVTSIRRSGGKIVFFTLEDGTGSIQVVFFN------EEYERFREKLKEGDIVRVRGKVKRYN------GGELELI 68 (75)
T ss_dssp EEEEEEEEEEEEEETTEEEEEEEETTEEEEEEEET------HHHHHHHHTS-TTSEEEEEEEEEEET------TSSEEEE
T ss_pred CEEEEEEEEEEcCCCCEEEEEEEECCccEEEEEcc------HHhhHHhhcCCCCeEEEEEEEEEEEC------CccEEEE
Confidence 78999999996556699999999999999999984 35667888999999999999998642 1259999
Q ss_pred EeEEEEe
Q 013865 187 IKKLYCV 193 (435)
Q Consensus 187 v~~i~vl 193 (435)
+.++.+|
T Consensus 69 ~~~i~~l 75 (75)
T PF01336_consen 69 VPKIEIL 75 (75)
T ss_dssp EEEEEEE
T ss_pred ECEEEEC
Confidence 9999876
No 51
>TIGR02367 PylS pyrrolysyl-tRNA synthetase. PylS is the archaeal enzyme responsible for charging the pyrrolysine tRNA, PylT, by ligating a free molecule of pyrrolysine. Pyrrolysine is encoded at an in-frame UAG (amber) at least in several corrinoid-dependent methyltransferases of the archaeal genera Methanosarcina and Methanococcoides, such as trimethylamine methyltransferase.
Probab=98.95 E-value=4.2e-09 Score=108.94 Aligned_cols=111 Identities=24% Similarity=0.431 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHhhcCCeEEeeCceeeccC------CCCCc----ceeEeccCCCceeec--cChHHHHhhhc----cCCC
Q 013865 251 QSQVGNIFRQFLLSENFVEIHTPKLIAGS------SEGGS----AVFRLDYKGQSACLA--QSPQLHKQMSI----CGDF 314 (435)
Q Consensus 251 rs~i~~~~r~fl~~~gF~EV~TP~l~~~~------~egga----~~F~v~~~~~~~~L~--~Spql~lq~~i----~~g~ 314 (435)
.+.+.+.+|++|...||.||.||+|+... .+++. ..|. ++...+|| +.|+|+..... ...-
T Consensus 242 ~~~Led~IRevfvg~GFqEV~TPtLt~eE~~E~m~~~~g~eI~n~Iyk---~ee~lvLRPdLTPsLaR~La~N~~~l~~P 318 (453)
T TIGR02367 242 LGKLERDITKFFVDRGFLEIKSPILIPAEYIERMGIDNDTELSKQIFR---VDKNFCLRPMLAPNLYNYLRKLDRALPDP 318 (453)
T ss_pred HHHHHHHHHHHHHHCCCEEEECCeecchHHHHhhcCccCCcccccceE---ecCceEecccCHHHHHHHHHHhhhhccCC
Confidence 46789999999999999999999996211 11121 2343 45678999 88999864322 1123
Q ss_pred ceeEEEecceecCCCCCCccccccccceeeeeccc-cHHHHHHHHHHHHHHH
Q 013865 315 GRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKK-HYSEVMDIVDRLFVTI 365 (435)
Q Consensus 315 ~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~-~~~d~m~~~e~li~~i 365 (435)
-|+|+||+|||+|.. +.+|+.||+|++++++..+ .+.|+..++.+++..+
T Consensus 319 qKIFEIGkVFR~E~~-~~thlREF~QL~~eIaG~~atfaDlealL~e~Lr~L 369 (453)
T TIGR02367 319 IKIFEIGPCYRKESD-GKEHLEEFTMLNFCQMGSGCTRENLEAIIKDFLDHL 369 (453)
T ss_pred eeEEEEcCeEecCCC-CCCCcCeEEEEEEEEECCCCCHHHHHHHHHHHHHHC
Confidence 499999999999985 7899999999999988642 3777777666666554
No 52
>cd00496 PheRS_alpha_core Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer.
Probab=98.58 E-value=2e-07 Score=89.14 Aligned_cols=108 Identities=17% Similarity=0.279 Sum_probs=77.8
Q ss_pred HHHHHHHHHhhcCCeEEeeCceeeccCCCCC-c------------ceeEeccCCC--ceeeccC--hHHHHhhhccC--C
Q 013865 253 QVGNIFRQFLLSENFVEIHTPKLIAGSSEGG-S------------AVFRLDYKGQ--SACLAQS--PQLHKQMSICG--D 313 (435)
Q Consensus 253 ~i~~~~r~fl~~~gF~EV~TP~l~~~~~egg-a------------~~F~v~~~~~--~~~L~~S--pql~lq~~i~~--g 313 (435)
.+.+.+|++|...||.||.|+.+++...+-. . .++.+ .. -.+||.| |.|.. .++. .
T Consensus 5 ~~~~~ir~~L~~~Gf~Ev~tys~~~~~~~~~~~~~~~~~~~~~~~~~v~l---~NP~~~~LR~sLlp~LL~--~l~~N~~ 79 (218)
T cd00496 5 KVIEEIEDIFVSMGFTEVEGPEVETDFYNFDALNIPQDHPARDMQDTFYI---NDPARLLLRTHTSAVQAR--ALAKLKP 79 (218)
T ss_pred HHHHHHHHHHHHCCCEEEeCCcccccchhhhhcCCCCCCcccccCceEEE---CCCceEEEeccCcHHHHH--HHHhcCC
Confidence 3567789999999999999999976521100 0 11111 12 3677755 55543 3343 4
Q ss_pred CceeEEEecceecCCCCCCccccccccceeeeeccc-cHHHHHHHHHHHHHHHH
Q 013865 314 FGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKK-HYSEVMDIVDRLFVTIF 366 (435)
Q Consensus 314 ~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~-~~~d~m~~~e~li~~i~ 366 (435)
--|+||||+|||++.+ +..|+|||+++.+.+++.. ++.|++.+++.++..+-
T Consensus 80 ~~~lFEiG~Vf~~~~~-~~~~~~E~~~l~~~~~g~~~df~dlkg~ve~ll~~l~ 132 (218)
T cd00496 80 PIRIFSIGRVYRNDEI-DATHLPEFHQIEGLVVDKGLTFADLKGTLEEFAKELF 132 (218)
T ss_pred CeeEEEEcCeEECCCC-CCCcCCccEEEEEEEECCCCCHHHHHHHHHHHHHHhc
Confidence 5699999999999874 5578999999999999861 48999999999997664
No 53
>PF01409 tRNA-synt_2d: tRNA synthetases class II core domain (F); InterPro: IPR002319 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Phenylalanyl-tRNA synthetase (6.1.1.20 from EC) is an alpha2/beta2 tetramer composed of 2 subunits that belongs to class IIc. In eubacteria, a small subunit (pheS gene) can be designated as beta (E. coli) or alpha subunit (nomenclature adopted in InterPro). Reciprocally the large subunit (pheT gene) can be designated as alpha (E. coli) or beta (see IPR004531 from INTERPRO and IPR004532 from INTERPRO). In all other kingdoms the two subunits have equivalent length in eukaryota, and can be identified by specific signatures. The enzyme from Thermus thermophilus has an alpha 2 beta 2 type quaternary structure and is one of the most complicated members of the synthetase family. Identification of phenylalanyl-tRNA synthetase as a member of class II aaRSs was based only on sequence alignment of the small alpha-subunit with other synthetases [].; GO: 0000049 tRNA binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3TUP_A 3HFV_A 3CMQ_A 3TEG_A 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B ....
Probab=98.51 E-value=5.3e-07 Score=87.92 Aligned_cols=115 Identities=19% Similarity=0.321 Sum_probs=80.4
Q ss_pred HHHHHHHHHhhcCCeEEeeCceeeccC--------CCC-Cc----ceeEe--ccC--CCceeecc--ChHHHHhh-hccC
Q 013865 253 QVGNIFRQFLLSENFVEIHTPKLIAGS--------SEG-GS----AVFRL--DYK--GQSACLAQ--SPQLHKQM-SICG 312 (435)
Q Consensus 253 ~i~~~~r~fl~~~gF~EV~TP~l~~~~--------~eg-ga----~~F~v--~~~--~~~~~L~~--Spql~lq~-~i~~ 312 (435)
.+++.+|++|...||.||.+|.+.+.. ... -+ +.|-+ .+- .....||. ||-+..-+ .-..
T Consensus 21 ~~~~~i~~~~~~~Gf~e~~~~~v~s~~~nFD~Ln~p~dHpaR~~~Dtfyi~~p~~~~~~~~vLRThts~~~~~~l~~~~~ 100 (247)
T PF01409_consen 21 KFIREIRDIFVGMGFQEVEGPEVESEFYNFDALNIPQDHPARDMQDTFYISNPYSAEEDYSVLRTHTSPGQLRTLNKHRP 100 (247)
T ss_dssp HHHHHHHHHHHCTTSEEESTTSEEEHHHHTGGGTSTTTSCGGCGTTSEBSCSSSBCECSSEEE-SSTHHHHHHHHTTTSH
T ss_pred HHHHHHHHHHHHCCCeEeeCCeEEeeHHHHHhhCcCCCccccccccceeeeccccccchhhhhhhhhhHHHHHHHHHhcC
Confidence 377889999999999999999995321 111 11 12433 111 57777874 55444432 1122
Q ss_pred CCceeEEEecceecCCCCCCccccccccceeeeecc-ccHHHHHHHHHHHHHHHHhh
Q 013865 313 DFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIK-KHYSEVMDIVDRLFVTIFDG 368 (435)
Q Consensus 313 g~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~-~~~~d~m~~~e~li~~i~~~ 368 (435)
.--|+|+||+|||+|.. +.+|+|+|.|+|.-+... -++.++..+++.+++++|..
T Consensus 101 ~p~kif~iG~VyR~D~~-D~th~~~f~Qleg~~~~~~~~f~~Lk~~l~~l~~~lfG~ 156 (247)
T PF01409_consen 101 PPIKIFEIGKVYRRDEI-DATHLPEFHQLEGLVVDKNVTFEDLKGTLEELLKELFGI 156 (247)
T ss_dssp SSEEEEEEEEEESSSCS-BSSBESEEEEEEEEEEETTE-HHHHHHHHHHHHHHHHTT
T ss_pred CCeEEEecCceEecCCc-ccccCccceeEeeEEEecccchhHHHHHHHHHHHHHhhc
Confidence 34799999999999995 899999999999976653 24889999999999999754
No 54
>cd00773 HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain. HisRS is a homodimer. It is responsible for the attachment of histidine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ. HisZ along with HisG catalyze the first reaction in histidine biosynthesis. HisZ is found only in a subset of bacteria and differs from HisRS in lacking a C-terminal anti-codon binding domain.
Probab=98.42 E-value=1.4e-06 Score=85.29 Aligned_cols=101 Identities=19% Similarity=0.272 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHHhhcCCeEEeeCceeeccCC--C-----CCcceeEe-ccCCCceeec--cChHHHHhhhc--c--CC
Q 013865 248 FRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS--E-----GGSAVFRL-DYKGQSACLA--QSPQLHKQMSI--C--GD 313 (435)
Q Consensus 248 ~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~--e-----gga~~F~v-~~~~~~~~L~--~Spql~lq~~i--~--~g 313 (435)
.+++..|.+.+++.|.++||.||.||.|..... . ...+.|++ +-.|+.+.|| ..|++..-.+- . ..
T Consensus 2 ~~~~~~l~~~l~~~f~~~Gy~~v~tP~le~~~~~~~~~~~~~~~~~~~~~d~~g~~l~LRpd~T~~iaR~~a~~~~~~~~ 81 (261)
T cd00773 2 AALRRYIEDTLREVFERYGYEEIDTPVFEYTELFLRKSGDEVSKEMYRFKDKGGRDLALRPDLTAPVARAVAENLLSLPL 81 (261)
T ss_pred hHHHHHHHHHHHHHHHHcCCEEeeccceeeHHHhcccccccccceEEEEECCCCCEEEeCCCCcHHHHHHHHhcCccCCC
Confidence 367889999999999999999999999976542 1 12236765 4457888888 34444432111 1 12
Q ss_pred CceeEEEecceecCCCCCCccccccccceeeeeccc
Q 013865 314 FGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKK 349 (435)
Q Consensus 314 ~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~ 349 (435)
--|.|++|+|||.|.+ ...|..||+|+++|+-..+
T Consensus 82 p~k~~y~g~vfR~e~~-~~g~~re~~Q~g~Eiig~~ 116 (261)
T cd00773 82 PLKLYYIGPVFRYERP-QKGRYREFYQVGVEIIGSD 116 (261)
T ss_pred CeEEEEEcCEEecCCC-CCCCccceEEeceeeeCCC
Confidence 3499999999999986 4668899999999987654
No 55
>PF00587 tRNA-synt_2b: tRNA synthetase class II core domain (G, H, P, S and T) This Prosite entry contains all class II enzymes. seryl tRNA synthetase structure; InterPro: IPR002314 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain includes the glycine, histidine, proline, threonine and serine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3UH0_A 3UGT_C 3UGQ_A 1B76_B 1GGM_B 1ATI_A 1ADY_C 1ADJ_C 2I4O_A 2I4M_B ....
Probab=98.36 E-value=1.3e-06 Score=80.09 Aligned_cols=115 Identities=20% Similarity=0.341 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHhh-cCCeEEeeCceeeccCC---CC-----CcceeEeccCC-CceeeccChHHH-----Hhhhcc--C
Q 013865 250 IQSQVGNIFRQFLL-SENFVEIHTPKLIAGSS---EG-----GSAVFRLDYKG-QSACLAQSPQLH-----KQMSIC--G 312 (435)
Q Consensus 250 ~rs~i~~~~r~fl~-~~gF~EV~TP~l~~~~~---eg-----ga~~F~v~~~~-~~~~L~~Spql~-----lq~~i~--~ 312 (435)
++.+|.+.+++.+. +.||.||.||.|.+... -| ....|.+.--+ ..++|+-+.+.. +..... .
T Consensus 1 l~~~l~~~~~~~~~~~~G~~ev~~P~l~~~~~~~~sg~~~~~~~~~~~~~~~~~~~~~L~pt~~~~~~~~~~~~~~~~~~ 80 (173)
T PF00587_consen 1 LRNALERFIREEFVLKFGFQEVDTPILIPSEVWEKSGHWDNFSDEMFKVKDRGDEEYCLRPTSEPGIYSLFKNEIRSSYR 80 (173)
T ss_dssp HHHHHHHHHHHHHHHHTTEEEEB--SEEEHHHHHHHSHHHHHGGGSEEEEETTTEEEEE-SSSHHHHHHHHHHHEEBHGG
T ss_pred CHHHHHHHHHHHhHHhcCCEEEECCeEEehHHhhhccccccccCCeeeeeecccccEEeccccccceeeeecceeeeccc
Confidence 57889999999999 99999999999986541 11 12356664433 568998665432 222222 1
Q ss_pred CC-ceeEEEecceecCC--CCCCccccccccceeeeeccccHHHHHHHHHHHHHHHH
Q 013865 313 DF-GRVFETGPVFRAED--SYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIF 366 (435)
Q Consensus 313 g~-~rVfeIgp~FR~E~--s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~ 366 (435)
.+ =|+|+||+|||+|. ..+...+-||+|.|++....+ ++..+..++++..+.
T Consensus 81 ~LP~~~~~~g~~fR~E~~~~~gl~R~reF~~~e~~~f~~~--~~~~~~~~~~~~~~~ 135 (173)
T PF00587_consen 81 DLPLKLYQIGTCFRNEARPTRGLFRLREFTMDEMHIFCTP--EQSEEEFEELLELYK 135 (173)
T ss_dssp GSSEEEEEEEEEEBSSSSSBSTTTS-SEEEEEEEEEEESS--HHHHHHHHHHHHHHH
T ss_pred cCCeEEeecccccccccccccccceeeEeeeeceEEEeCC--cccHHHHHHHHHHHH
Confidence 23 38999999999993 234778889999999987653 677777766665444
No 56
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=98.30 E-value=4.1e-06 Score=84.79 Aligned_cols=119 Identities=13% Similarity=0.191 Sum_probs=83.2
Q ss_pred HHHHHHHHHHhhcCCeEEeeCceeeccC--------CCC-Cc-ceeEeccCCCceeec--cChHHHHhhhccCCC-ceeE
Q 013865 252 SQVGNIFRQFLLSENFVEIHTPKLIAGS--------SEG-GS-AVFRLDYKGQSACLA--QSPQLHKQMSICGDF-GRVF 318 (435)
Q Consensus 252 s~i~~~~r~fl~~~gF~EV~TP~l~~~~--------~eg-ga-~~F~v~~~~~~~~L~--~Spql~lq~~i~~g~-~rVf 318 (435)
+.+...||++|...||.|+.+|.|.+.- ... -| +.-.+-|.+....|| .||-+-.-|.- ... -|+|
T Consensus 111 ~~~~~~Ir~if~~mGF~ev~gpeIes~~~NFdaLn~P~dHPaR~~~DTfyI~~~~lLRThTSp~qir~L~~-~~~Pirif 189 (339)
T PRK00488 111 TQTIEEIEDIFVGMGFEVAEGPEIETDYYNFEALNIPKDHPARDMQDTFYIDDGLLLRTHTSPVQIRTMEK-QKPPIRII 189 (339)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCccccHHHHHHHhCCCCCCcccccCceEEEcCCceeeccCcHHHHHHHHh-cCCCeEEE
Confidence 3478889999999999999999986311 111 11 111122345556676 67765444332 223 3999
Q ss_pred EEecceecCCCCCCccccccccceeeeecc-ccHHHHHHHHHHHHHHHHh-hhhhh
Q 013865 319 ETGPVFRAEDSYTHRHLCEFTGLDVEMEIK-KHYSEVMDIVDRLFVTIFD-GLNNV 372 (435)
Q Consensus 319 eIgp~FR~E~s~t~rHl~EFt~lE~e~a~~-~~~~d~m~~~e~li~~i~~-~~~~~ 372 (435)
++|+|||++.. +.+|.|+|+|+|.-+... -++.|+..+++.+++.+|. .+.-+
T Consensus 190 ~~G~VyR~D~~-DatH~~~FhQleglvvd~~vtf~dLK~~L~~fl~~~fg~~~~~R 244 (339)
T PRK00488 190 APGRVYRNDSD-DATHSPMFHQVEGLVVDKNISFADLKGTLEDFLKAFFGEDVKIR 244 (339)
T ss_pred EeeeEEEcCCC-CcccCcceeeEEEEEEeCCCCHHHHHHHHHHHHHHHcCCCCeEE
Confidence 99999999984 889999999999755542 2489999999999999996 44433
No 57
>TIGR00468 pheS phenylalanyl-tRNA synthetase, alpha subunit. Most phenylalanyl-tRNA synthetases are heterodimeric, with 2 alpha (pheS) and 2 beta (pheT) subunits. This model describes the alpha subunit, which shows some similarity to class II aminoacyl-tRNA ligases. Mitochondrial phenylalanyl-tRNA synthetase is a single polypeptide chain, active as a monomer, and similar to this chain rather than to the beta chain, but excluded from this model. An interesting feature of the alignment of all sequences captured by this model is a deep split between non-spirochete bacterial examples and all other examples; supporting this split is a relative deletion of about 50 residues in the former set between two motifs well conserved throughout the alignment.
Probab=98.22 E-value=7.1e-06 Score=82.07 Aligned_cols=111 Identities=18% Similarity=0.296 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHhhcCCeEEeeCceeeccC--CCC---Cc--------ceeEeccCCCceeeccC--hHHHHhhhccCCC-
Q 013865 251 QSQVGNIFRQFLLSENFVEIHTPKLIAGS--SEG---GS--------AVFRLDYKGQSACLAQS--PQLHKQMSICGDF- 314 (435)
Q Consensus 251 rs~i~~~~r~fl~~~gF~EV~TP~l~~~~--~eg---ga--------~~F~v~~~~~~~~L~~S--pql~lq~~i~~g~- 314 (435)
...+.+.+|++|...||.|+.||.+.+.. .+. .. ++|.+. ...+||.| |-+-. .+....
T Consensus 74 ~~~~~~~ir~~l~~~Gf~Ev~~~~~~s~~~~fd~l~~~~~hpar~~~d~~~l~---d~~vLRtsl~p~ll~--~l~~N~~ 148 (294)
T TIGR00468 74 LTRVIDEIRDIFLGLGFTEEKGPEVETDFWNFDALNIPQDHPARDMQDTFYIK---DRLLLRTHTTAVQLR--TMEENEK 148 (294)
T ss_pred HHHHHHHHHHHHHHCCCEEeeCCceeccHHHHHHhCCCCCCcchhhccceeec---CCcceecccHHHHHH--HHHhcCC
Confidence 34567788999999999999999997541 000 00 123232 34566654 43332 233334
Q ss_pred --ceeEEEecceecCCCCCCccccccccceeeeecc-ccHHHHHHHHHHHHHHHHh
Q 013865 315 --GRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIK-KHYSEVMDIVDRLFVTIFD 367 (435)
Q Consensus 315 --~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~-~~~~d~m~~~e~li~~i~~ 367 (435)
-|+||||+|||++.. +.+|+|||++++.-+... -++.|+..+++.++..+.-
T Consensus 149 ~pirlFEiGrVfr~d~~-d~~~~pef~ql~gl~~~~~~~f~dLKg~le~ll~~l~~ 203 (294)
T TIGR00468 149 PPIRIFSPGRVFRNDTV-DATHLPEFHQVEGLVIDKNVSFTNLKGFLEEFLKKMFG 203 (294)
T ss_pred CCceEEEecceEEcCCC-CCccCChhhEEEEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence 499999999999874 678999999999876642 1488999999999987754
No 58
>PRK00037 hisS histidyl-tRNA synthetase; Reviewed
Probab=98.19 E-value=9.6e-06 Score=84.40 Aligned_cols=118 Identities=19% Similarity=0.241 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCC----CC------CcceeEe-ccCCCceeec--cChHHHHhhhccC
Q 013865 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS----EG------GSAVFRL-DYKGQSACLA--QSPQLHKQMSICG 312 (435)
Q Consensus 246 ~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~----eg------ga~~F~v-~~~~~~~~L~--~Spql~lq~~i~~ 312 (435)
.-.+.+..+...+++.|..+||.||.||++..... .| ..+.|.+ +--|+.+.|| ..|++..-.+--.
T Consensus 16 ~~~~~~~~i~~~i~~~~~~~Gy~ei~tP~le~~~~~~~~~g~~~~~~~~~~~~~~d~~g~~l~LRpd~T~~~ar~~~~~~ 95 (412)
T PRK00037 16 EESAKWQYVEDTIREVFERYGFSEIRTPIFEYTELFKRKVGEETDIVEKEMYTFQDKGGRSLTLRPEGTAPVVRAVIEHK 95 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCeEeeccccchHHHhccccCcccccccceeEEEEcCCCCEEEecCCCcHHHHHHHHhCC
Confidence 45667788999999999999999999999964321 11 2335664 3357888888 3455554322111
Q ss_pred -CCceeEEEecceecCCCCCCccccccccceeeeeccccH---HHHHHHHHHHHHH
Q 013865 313 -DFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHY---SEVMDIVDRLFVT 364 (435)
Q Consensus 313 -g~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~---~d~m~~~e~li~~ 364 (435)
.--|.|++|+|||+|.+ ...|.-||+|+++|+-..++. -|++.++.+++..
T Consensus 96 ~~p~r~~~~g~vfR~e~~-~~gr~ref~Q~g~ei~g~~~~~~d~E~i~~~~~~l~~ 150 (412)
T PRK00037 96 LQPFKLYYIGPMFRYERP-QKGRYRQFHQFGVEVIGSDSPLADAEVIALAADILKA 150 (412)
T ss_pred CCCeEEEEEcCccccCCC-CCCcccceEEcCeeeeCCCCcchhHHHHHHHHHHHHH
Confidence 33599999999999986 445778999999998654321 4566666655544
No 59
>cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain. This domain is the core catalytic domain of tRNA synthetases of the subgroup containing glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. These enzymes belong to class II aminoacyl-tRNA synthetases (aaRS) based upon their structure and the presence of three characteristic sequence motifs in the core domain. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ and the accessory subunit of mitochondrial polymerase gamma (Pol gamma b) . Most class II tRNA synthetases are dimers, with this subgroup consisting of mostly homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=98.19 E-value=7.1e-06 Score=78.37 Aligned_cols=102 Identities=17% Similarity=0.178 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHHhhcCCeEEeeCceeeccCC-C-CC-c-----ceeEeccC-----CCceeeccChH--HH---Hhhh
Q 013865 248 FRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS-E-GG-S-----AVFRLDYK-----GQSACLAQSPQ--LH---KQMS 309 (435)
Q Consensus 248 ~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~-e-gg-a-----~~F~v~~~-----~~~~~L~~Spq--l~---lq~~ 309 (435)
.+++..|.+.+++.|...||.||.||.|..... + +| . ..|.+..- +..++|+-... ++ ....
T Consensus 2 ~~~~~~l~~~~~~~~~~~G~~ei~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LrP~~~~~i~~~~~~~~ 81 (235)
T cd00670 2 TALWRALERFLDDRMAEYGYQEILFPFLAPTVLFFKGGHLDGYRKEMYTFEDKGRELRDTDLVLRPAACEPIYQIFSGEI 81 (235)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEECCeEcCHHHHhhcCCcccchhhcCeeccCcccccCCeEEEecCCCHHHHHHHhccC
Confidence 357889999999999999999999999986441 1 11 1 24555332 46788884433 22 2221
Q ss_pred cc-CCC-ceeEEEecceecCCCC--CCccccccccceeeeeccc
Q 013865 310 IC-GDF-GRVFETGPVFRAEDSY--THRHLCEFTGLDVEMEIKK 349 (435)
Q Consensus 310 i~-~g~-~rVfeIgp~FR~E~s~--t~rHl~EFt~lE~e~a~~~ 349 (435)
.. ..+ -|+|++|+|||+|.+. +..-+-||+|.|++.-..+
T Consensus 82 ~~~~~lP~r~~~~g~~fR~E~~~~~gl~R~reF~q~e~~~~~~~ 125 (235)
T cd00670 82 LSYRALPLRLDQIGPCFRHEPSGRRGLMRVREFRQVEYVVFGEP 125 (235)
T ss_pred ccchhcCeeeeeecccccCCCCCCCCChhheeeeeceEEEEcCH
Confidence 11 123 3899999999999863 1334579999999987643
No 60
>TIGR00442 hisS histidyl-tRNA synthetase. This model finds a histidyl-tRNA synthetase in every completed genome. Apparent second copies from Bacillus subtilis, Synechocystis sp., and Aquifex aeolicus are slightly shorter, more closely related to each other than to other hisS proteins, and actually serve as regulatory subunits for an enzyme of histidine biosynthesis. They were excluded from the seed alignment and score much lower than do single copy histidyl-tRNA synthetases of other genomes not included in the seed alignment. These putative second copies of HisS score below the trusted cutoff. The regulatory protein kinase GCN2 of Saccharomyces cerevisiae (YDR283c), and related proteins from other species designated eIF-2 alpha kinase, have a domain closely related to histidyl-tRNA synthetase that may serve to detect and respond to uncharged tRNA(his), an indicator of amino acid starvation; these regulatory proteins are not orthologous and so score below the noise cutoff.
Probab=98.12 E-value=1.5e-05 Score=82.52 Aligned_cols=118 Identities=17% Similarity=0.223 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCC---CCC-------cceeEe-ccCCCceeec--cChHHHHhhhc--
Q 013865 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS---EGG-------SAVFRL-DYKGQSACLA--QSPQLHKQMSI-- 310 (435)
Q Consensus 246 ~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~---egg-------a~~F~v-~~~~~~~~L~--~Spql~lq~~i-- 310 (435)
.-.+++..+...+++.|.++||.||.||++..... .+| .+.|.+ +.-|+.+.|| ..|++....+-
T Consensus 12 ~~~~~~~~i~~~i~~~f~~~Gy~~i~~P~le~~~~~~~~~g~~~~~~~~~~~~~~d~~g~~l~LRpD~T~~iaR~~~~~~ 91 (397)
T TIGR00442 12 EEMIKWQYIEETIREVFELYGFKEIRTPIFEYTELFARKVGEETDIVEKEMYTFKDKGGRSLTLRPEGTAPVARAVIENK 91 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCeEecCcccchHHHhhhccCccccccccceEEEECCCCCEEeecCCCcHHHHHHHHhcc
Confidence 45677888999999999999999999999964321 111 235664 4467888887 44555433111
Q ss_pred -cCCC-ceeEEEecceecCCCCCCccccccccceeeeeccccH---HHHHHHHHHHHHH
Q 013865 311 -CGDF-GRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHY---SEVMDIVDRLFVT 364 (435)
Q Consensus 311 -~~g~-~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~---~d~m~~~e~li~~ 364 (435)
...+ -|.|++|+|||.|.+. ..|.-||+|+++|+...++. -|++.++.+++..
T Consensus 92 ~~~~~p~r~~y~g~vfR~e~~~-~gr~ref~Q~g~eiig~~~~~~d~E~i~l~~e~l~~ 149 (397)
T TIGR00442 92 LLLPKPFKLYYIGPMFRYERPQ-KGRYRQFHQFGVEVIGSDSPLADAEIIALAAEILKE 149 (397)
T ss_pred cccCCCeEEEEEcCeecCCCCC-CCcccceEEcCeeeeCCCCHHHHHHHHHHHHHHHHH
Confidence 1112 4999999999999864 44668999999998765432 2455555555543
No 61
>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional
Probab=98.01 E-value=3.5e-05 Score=82.36 Aligned_cols=116 Identities=17% Similarity=0.279 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHhhcCCeEEeeCceeecc----------CCCCC---cceeEecc------------------------
Q 013865 249 RIQSQVGNIFRQFLLSENFVEIHTPKLIAG----------SSEGG---SAVFRLDY------------------------ 291 (435)
Q Consensus 249 ~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~----------~~egg---a~~F~v~~------------------------ 291 (435)
.....+++.||+.|...||.||.||.+.+. ..+++ .+.|-++.
T Consensus 233 ~~~~~~~~~~~~~f~~~Gf~e~~~p~vE~~~~nfd~lf~p~~hpaR~~~dtf~~~~~~~~~~~~~~~~~v~~~he~g~~~ 312 (489)
T PRK04172 233 HPYREFIDEVRDILVEMGFEEMKGPLVETEFWNFDALFQPQDHPAREMQDTFYLKYPGIGDLPEELVERVKEVHEHGGDT 312 (489)
T ss_pred ChHHHHHHHHHHHHHHCCCEEeeCCeeeecCcccccccCCCCCCCCCccceEEECCcccccCcHHHHHHHHHHHhccCCC
Confidence 345678999999999999999999998743 00000 01221110
Q ss_pred ------------CCCceeeccC--hHHHHhhhcc-CCCceeEEEecceecCCCCCCccccccccceeeeeccc-cHHHHH
Q 013865 292 ------------KGQSACLAQS--PQLHKQMSIC-GDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKK-HYSEVM 355 (435)
Q Consensus 292 ------------~~~~~~L~~S--pql~lq~~i~-~g~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~-~~~d~m 355 (435)
.++.+.||.. |-+-.-.+-- ..=-|+|+||+|||+|.. +..|++||++++..+...+ ++.+++
T Consensus 313 ~~~~~~y~~~~~~~~~~~LR~~~T~~~~r~l~~~~~~p~rlFeiGrVFR~e~~-d~~~l~Ef~ql~~~i~G~~~~f~elk 391 (489)
T PRK04172 313 GSRGWGYKWDEDIAKRLVLRTHTTALSARYLASRPEPPQKYFSIGRVFRPDTI-DATHLPEFYQLEGIVMGEDVSFRDLL 391 (489)
T ss_pred CCccccCCcchhhhhccccccCChHHHHHHHHhcCCCCeEEEEecceEcCCCC-CcccCCchheEEEEEEeCCCCHHHHH
Confidence 0234456522 2222111101 112499999999999985 6688999999999998742 367888
Q ss_pred HHHHHHHHHH
Q 013865 356 DIVDRLFVTI 365 (435)
Q Consensus 356 ~~~e~li~~i 365 (435)
.++++++..+
T Consensus 392 g~l~~ll~~l 401 (489)
T PRK04172 392 GILKEFYKRL 401 (489)
T ss_pred HHHHHHHHHh
Confidence 8888888765
No 62
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional
Probab=98.00 E-value=2.6e-05 Score=82.61 Aligned_cols=51 Identities=22% Similarity=0.355 Sum_probs=40.9
Q ss_pred CceeEEEecceecCCCCCCccccccccceeeeeccc-cHHHHHHHHHHHHHHH
Q 013865 314 FGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKK-HYSEVMDIVDRLFVTI 365 (435)
Q Consensus 314 ~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~-~~~d~m~~~e~li~~i 365 (435)
--|+|.||+|||+|.. +.+|++||+|+|..+...+ ...+++.++.+++..+
T Consensus 357 P~k~fsigrVfR~d~~-DatH~~eFhQ~Eg~vi~~~~s~~~L~~~l~~f~~~l 408 (494)
T PTZ00326 357 PKKYFSIDRVFRNETL-DATHLAEFHQVEGFVIDRNLTLGDLIGTIREFFRRI 408 (494)
T ss_pred CceEEecCCEecCCCC-CCCcCceeEEEEEEEEeCCCCHHHHHHHHHHHHHhc
Confidence 3599999999999995 8999999999999877643 3567777777666655
No 63
>cd00778 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from archaea, the cytoplasm of eukaryotes and some bacteria.
Probab=97.98 E-value=1.4e-05 Score=78.45 Aligned_cols=117 Identities=17% Similarity=0.119 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCC---CC------CcceeEeccCC-----CceeeccChHH-----HH
Q 013865 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS---EG------GSAVFRLDYKG-----QSACLAQSPQL-----HK 306 (435)
Q Consensus 246 ~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~---eg------ga~~F~v~~~~-----~~~~L~~Spql-----~l 306 (435)
.-.+++..|.+.+++.+...||.||.||.|..... ++ +.+.|.+.--+ .+++|+-..+- +.
T Consensus 30 ~g~~l~~~l~~~~~~~~~~~G~~ev~~P~l~~~~~~~~~sg~~~~f~~~~f~~~~~~~~~~~~~~~L~Pt~e~~~~~~~~ 109 (261)
T cd00778 30 YGYAIWENIQKILDKEIKETGHENVYFPLLIPESELEKEKEHIEGFAPEVAWVTHGGLEELEEPLALRPTSETAIYPMFS 109 (261)
T ss_pred cHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHhhhhhcchhhcCcceEEEEecCCcccCCcEEEcCCCCHHHHHHHH
Confidence 45678889999999999999999999999976542 12 22357664322 46888876432 22
Q ss_pred hhhcc-CCC-ceeEEEecceecCCCCC--CccccccccceeeeeccccHHHHHHHHHHHHH
Q 013865 307 QMSIC-GDF-GRVFETGPVFRAEDSYT--HRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFV 363 (435)
Q Consensus 307 q~~i~-~g~-~rVfeIgp~FR~E~s~t--~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~ 363 (435)
..... .++ =|+|+||+|||+|.+.+ .-=.-||+|.|.+..+.+ .+++.+..++++.
T Consensus 110 ~~i~s~r~LPlr~~~~~~~fR~E~~~~~Gl~R~reF~~~d~h~~~~~-~e~~~~~~~~~~~ 169 (261)
T cd00778 110 KWIRSYRDLPLKINQWVNVFRWETKTTRPFLRTREFLWQEGHTAHAT-EEEAEEEVLQILD 169 (261)
T ss_pred hhccchhhcCHHHHhhhhhccCCCCCCCceeEeeeeeeeceeeccCC-HHHHHHHHHHHHH
Confidence 22111 123 28999999999998632 223459999999988875 6777776666654
No 64
>cd00772 ProRS_core Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=97.97 E-value=7e-05 Score=73.80 Aligned_cols=121 Identities=16% Similarity=0.113 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCC---CC-----C-cceeEeccCC-----CceeeccChHH-----HHh
Q 013865 247 IFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS---EG-----G-SAVFRLDYKG-----QSACLAQSPQL-----HKQ 307 (435)
Q Consensus 247 i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~---eg-----g-a~~F~v~~~~-----~~~~L~~Spql-----~lq 307 (435)
-.+++..|.+.+++-+...||.||.||.|..... .| + .+.|.+.--+ .+++|+-..+- |..
T Consensus 31 g~~i~~~I~~~i~~~~~~~G~~ev~~P~l~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~~~~l~LrPt~e~~~~~~~~~ 110 (264)
T cd00772 31 AKAILDKIENVLDKMFKEHGAQNALFPFFILASFLEKEAEHDEGFSKELAVFKDAGDEELEEDFALRPTLEENIGEIAAK 110 (264)
T ss_pred HHHHHHHHHHHHHHHHHHcCCeEEECCeeccHHHHhhcCCcccccCccceEEEeCCCCccCceEEECCCCCHHHHHHHHh
Confidence 3456788999999999999999999999976431 11 1 2345553322 67899865543 222
Q ss_pred hhcc-CCCc-eeEEEecceecCCCCCCc---cccccccceeeeeccccHHHHHHHHHHHH---HHHHhhh
Q 013865 308 MSIC-GDFG-RVFETGPVFRAEDSYTHR---HLCEFTGLDVEMEIKKHYSEVMDIVDRLF---VTIFDGL 369 (435)
Q Consensus 308 ~~i~-~g~~-rVfeIgp~FR~E~s~t~r---Hl~EFt~lE~e~a~~~~~~d~m~~~e~li---~~i~~~~ 369 (435)
.... ..+. |+|++|+|||.|.. +.+ =.-||+|.|.+....+ .++....++.++ ..+++.+
T Consensus 111 ~i~s~~~LPlrl~~~~~~fR~E~r-~~~Gl~R~reF~~~e~~~~~~~-~e~a~~e~~~~~~~~~~i~~~l 178 (264)
T cd00772 111 FIKSWKDLPQHLNQIGNKFRDEIR-PRFGFLRAREFIMKDGHSAHAD-AEEADEEFLNMLSAYAEIARDL 178 (264)
T ss_pred hhhhhhccCeeEEEEeCeEeCcCC-CCCCcceeeEEEEeeeEEecCC-HHHHHHHHHHHHHHHHHHHHhc
Confidence 2211 2343 99999999999953 222 2469999999876665 677777777666 3445443
No 65
>cd00771 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain. ThrRS is a homodimer. It is responsible for the attachment of threonine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=97.94 E-value=5.4e-05 Score=75.80 Aligned_cols=102 Identities=20% Similarity=0.239 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccC----C---CC-CcceeEeccCCCceeeccChH-----HHHhhhcc-
Q 013865 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS----S---EG-GSAVFRLDYKGQSACLAQSPQ-----LHKQMSIC- 311 (435)
Q Consensus 246 ~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~----~---eg-ga~~F~v~~~~~~~~L~~Spq-----l~lq~~i~- 311 (435)
.-.+++..|.+.+++.+.+.||.||.||.|.... + ++ ..+.|.++--+..++|+-... +|......
T Consensus 28 ~g~~l~~~l~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sg~~~~~~~~my~~~~~~~~l~LRP~~~~~~~~~~~~~~~s~ 107 (298)
T cd00771 28 KGAIIRNELEDFLRELQRKRGYQEVETPIIYNKELWETSGHWDHYRENMFPFEEEDEEYGLKPMNCPGHCLIFKSKPRSY 107 (298)
T ss_pred cHHHHHHHHHHHHHHHHHHcCCEEEECCeecCHHHHhhCCCccccccCceEeccCCceEEEcccCCHHHHHHHHhhccch
Confidence 3466778899999999999999999999997543 1 11 123677755557888874332 22222111
Q ss_pred CCCc-eeEEEecceecCCCCCCc---cccccccceeeeec
Q 013865 312 GDFG-RVFETGPVFRAEDSYTHR---HLCEFTGLDVEMEI 347 (435)
Q Consensus 312 ~g~~-rVfeIgp~FR~E~s~t~r---Hl~EFt~lE~e~a~ 347 (435)
..+. |.|++|+|||+|.+.+.+ =.-||+|.|.++-.
T Consensus 108 ~~LPlr~~~~g~vfR~E~~~~~~Gl~R~reF~q~e~~i~~ 147 (298)
T cd00771 108 RDLPLRLAEFGTVHRYEQSGALHGLTRVRGFTQDDAHIFC 147 (298)
T ss_pred hhCCeEEEEecCcccCCCCCCCCCccccccEEECCEEEEe
Confidence 1343 999999999999863211 23599999999763
No 66
>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain
Probab=97.91 E-value=4.1e-05 Score=80.87 Aligned_cols=50 Identities=22% Similarity=0.431 Sum_probs=41.0
Q ss_pred ceeEEEecceecCCCCCCccccccccceeeeecc-ccHHHHHHHHHHHHHHH
Q 013865 315 GRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIK-KHYSEVMDIVDRLFVTI 365 (435)
Q Consensus 315 ~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~-~~~~d~m~~~e~li~~i 365 (435)
-|+|.||+|||+|.. |.+|+|||.|+|--+.-. =++.+++.++..++..+
T Consensus 343 ~k~fsigrVfR~d~i-DatH~~eFhQ~EG~vvd~~~t~~~L~g~l~~f~~~l 393 (492)
T PLN02853 343 KRYFSIDRVFRNEAV-DRTHLAEFHQVEGLVCDRGLTLGDLIGVLEDFFSRL 393 (492)
T ss_pred cEEEeccceecCCCC-CcccCccceeEEEEEEeCCCCHHHHHHHHHHHHHHc
Confidence 499999999999995 899999999999655432 14788888888888775
No 67
>TIGR00409 proS_fam_II prolyl-tRNA synthetase, family II. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent groups. This group includes enzymes from Escherichia coli, Bacillus subtilis, Aquifex aeolicus, the spirochete Treponema pallidum, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae. The other group includes the Pro-specific domain of a human multifunctional tRNA ligase and the prolyl-tRNA synthetases from the Archaea, the Mycoplasmas, and the spirochete Borrelia burgdorferi.
Probab=97.89 E-value=0.00011 Score=79.98 Aligned_cols=123 Identities=20% Similarity=0.239 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCC--C------CCcceeEec-cCCCceeeccCh-----HHHHhhhcc
Q 013865 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS--E------GGSAVFRLD-YKGQSACLAQSP-----QLHKQMSIC 311 (435)
Q Consensus 246 ~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~--e------gga~~F~v~-~~~~~~~L~~Sp-----ql~lq~~i~ 311 (435)
.-.+++..|.+.+|+.|...||.||.||.|..... + -|.+.|.+. -.+..++|+-.. .++...+..
T Consensus 45 ~g~rv~~~I~~~i~~~~~~~G~~ei~~P~l~~~el~~~sg~~~~~~~emf~~~dr~~~~l~LrPT~Ee~~t~~~~~~i~s 124 (568)
T TIGR00409 45 LGLRVLKKVENIVREEMNKDGAIEVLLPALQPAELWQESGRWDTYGPELLRLKDRKGREFVLGPTHEEVITDLARNEIKS 124 (568)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCEEEECCccchHHHHhhcCCCCccchhcEEEecCCCCEEEEcCCCcHHHHHHHHHHHhh
Confidence 34667889999999999999999999999986431 1 134578873 457788998642 233322211
Q ss_pred -CCCc-eeEEEecceecCC-CC-CCccccccccceeeeeccccHHHHHHHHHHHH---HHHHhhh
Q 013865 312 -GDFG-RVFETGPVFRAED-SY-THRHLCEFTGLDVEMEIKKHYSEVMDIVDRLF---VTIFDGL 369 (435)
Q Consensus 312 -~g~~-rVfeIgp~FR~E~-s~-t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li---~~i~~~~ 369 (435)
..+. |+|+|+++||.|. .. +.-=.-||+|.|.|.-..+ ..++....+.|+ ..+|+.+
T Consensus 125 yr~LPlrlyqi~~~fR~E~rpr~Gl~R~REF~~~d~~~f~~~-~~~a~~e~~~~~~~y~~if~~L 188 (568)
T TIGR00409 125 YKQLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHSD-EESLDATYQKMYQAYSNIFSRL 188 (568)
T ss_pred ccccCeEEEEeeCEeeCCCCCCCCccccccEEEEEEEEEeCC-hHHHHHHHHHHHHHHHHHHHHh
Confidence 1344 9999999999993 21 1112459999999998775 455555555444 5566655
No 68
>TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit. Apparant second copies of histidyl-tRNA synthetase, found in Bacillus subtilis, Synechocystis sp., Aquifex aeolicus, and others, are in fact a regulatory subunit of ATP phosphoribosyltransferase, and usually encoded by a gene adjacent to that encoding the catalytic subunit.
Probab=97.88 E-value=6.3e-05 Score=75.76 Aligned_cols=116 Identities=22% Similarity=0.217 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCC---CC---CcceeEe-ccCCCceeec--cChHHHHhhhcc-----C
Q 013865 247 IFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS---EG---GSAVFRL-DYKGQSACLA--QSPQLHKQMSIC-----G 312 (435)
Q Consensus 247 i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~---eg---ga~~F~v-~~~~~~~~L~--~Spql~lq~~i~-----~ 312 (435)
-.+++..|...+++.|.++||.+|.||++..... .+ ..+.|.+ +--|+.+.|| ..|++-.- +.. .
T Consensus 7 ~~~~~~~i~~~l~~~~~~~Gy~~i~tP~le~~~~~~~~~~~~~~~~~~~~d~~g~~l~LRpD~T~~iaR~-~~~~~~~~~ 85 (314)
T TIGR00443 7 EAARKEEIERQLQDVFRSWGYQEIITPTLEYLDTLSAGGGILNEDLFKLFDSLGRVLGLRPDMTTPIARA-VSTRLRDRP 85 (314)
T ss_pred HHHHHHHHHHHHHHHHHHcCCeeccCcchhhHHHhcccCCcchhceEEEECCCCCEEeecCcCcHHHHHH-HHHhcccCC
Confidence 4567889999999999999999999999875331 11 2235655 3357788888 35554442 221 1
Q ss_pred CCceeEEEecceecCCCCCCccccccccceeeeeccccH---HHHHHHHHHHHHH
Q 013865 313 DFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHY---SEVMDIVDRLFVT 364 (435)
Q Consensus 313 g~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~---~d~m~~~e~li~~ 364 (435)
.--|+|++|+|||.|.. ...+.-||+|+++|+-..++. -|++.++-+.+..
T Consensus 86 ~p~r~~y~g~VfR~~~~-~~gr~re~~Q~g~Eiig~~~~~adaEvi~l~~~~l~~ 139 (314)
T TIGR00443 86 LPLRLCYAGNVFRTNES-GAGRSREFTQAGVELIGAGGPAADAEVIALLIEALKA 139 (314)
T ss_pred CCeEEEEeceEeecCCC-cCCCcccccccceEEeCCCCchhHHHHHHHHHHHHHH
Confidence 23599999999999986 455788999999997654322 2566666655554
No 69
>COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=97.87 E-value=6.5e-05 Score=75.87 Aligned_cols=114 Identities=15% Similarity=0.245 Sum_probs=74.8
Q ss_pred HHHHHHHHHhhcCCeEEeeCceeeccCCC-----------CCcceeEeccCCCc---eeec--cChHHHHhhhccCC-Cc
Q 013865 253 QVGNIFRQFLLSENFVEIHTPKLIAGSSE-----------GGSAVFRLDYKGQS---ACLA--QSPQLHKQMSICGD-FG 315 (435)
Q Consensus 253 ~i~~~~r~fl~~~gF~EV~TP~l~~~~~e-----------gga~~F~v~~~~~~---~~L~--~Spql~lq~~i~~g-~~ 315 (435)
.++..++++|.+.||.++..|-+.. +-- +.-+.--+-|++.. .-|| +||=--..|.--.. =-
T Consensus 115 ~~~e~i~~iF~~mGF~~~~gp~IE~-d~~NFDaLn~P~dHPARdmqDTFy~~~~~~~~lLRTHTs~vq~R~l~~~~~~P~ 193 (335)
T COG0016 115 QTIEEIEDIFLGMGFTEVEGPEIET-DFYNFDALNIPQDHPARDMQDTFYLKDDREKLLLRTHTSPVQARTLAENAKIPI 193 (335)
T ss_pred HHHHHHHHHHHHcCceeccCCcccc-cccchhhhcCCCCCCcccccceEEEcCCCCceeecccCcHhhHHHHHhCCCCCc
Confidence 4788899999999999999995532 110 10011112244432 3555 44422222211111 46
Q ss_pred eeEEEecceecCCCCCCcccccccccee-eeeccccHHHHHHHHHHHHHHHHhh
Q 013865 316 RVFETGPVFRAEDSYTHRHLCEFTGLDV-EMEIKKHYSEVMDIVDRLFVTIFDG 368 (435)
Q Consensus 316 rVfeIgp~FR~E~s~t~rHl~EFt~lE~-e~a~~~~~~d~m~~~e~li~~i~~~ 368 (435)
|+|++|+|||++.. +.+|+|+|.|+|- .+.-.-++.+|+.+++++++.++..
T Consensus 194 k~~~~grvyR~D~~-DaTHs~~FhQiEGlvvd~~~s~~~Lkg~L~~f~~~~fg~ 246 (335)
T COG0016 194 KIFSPGRVYRNDTV-DATHSPEFHQIEGLVVDKNISFADLKGTLEEFAKKFFGE 246 (335)
T ss_pred eEecccceecCCCC-CcccchheeeeEEEEEeCCccHHHHHHHHHHHHHHhcCC
Confidence 99999999999985 8999999999995 3332224789999999999999953
No 70
>cd00779 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from prokaryotes and from the mitochondria of eukaryotes.
Probab=97.87 E-value=5.4e-05 Score=74.15 Aligned_cols=115 Identities=19% Similarity=0.221 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHHHHhhcCCeEEeeCceeeccC--CC-C-----CcceeEec-cCCCceeeccChH-----HHHhhhcc-
Q 013865 247 IFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS--SE-G-----GSAVFRLD-YKGQSACLAQSPQ-----LHKQMSIC- 311 (435)
Q Consensus 247 i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~--~e-g-----ga~~F~v~-~~~~~~~L~~Spq-----l~lq~~i~- 311 (435)
-.+++..|.+.+++.|...||.||.||+|.... .. | +.+.|.+. --+.+++|+...+ ++......
T Consensus 30 g~~l~~~i~~~~~~~~~~~G~~ei~~P~l~~~~~~~~sg~~~~~~~emy~~~d~~~~~l~LrPt~e~~~t~~~~~~i~s~ 109 (255)
T cd00779 30 GLRVLKKIENIIREEMNKIGAQEILMPILQPAELWKESGRWDAYGPELLRLKDRHGKEFLLGPTHEEVITDLVANEIKSY 109 (255)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHhcCCccccCcccEEEecCCCCeEEEecCCcHHHHHHHHhccccH
Confidence 456788899999999999999999999997532 11 1 22367763 3457889986532 33332221
Q ss_pred CCCc-eeEEEecceecCCCCCC--ccccccccceeeeeccccHHHHHHHHHHHH
Q 013865 312 GDFG-RVFETGPVFRAEDSYTH--RHLCEFTGLDVEMEIKKHYSEVMDIVDRLF 362 (435)
Q Consensus 312 ~g~~-rVfeIgp~FR~E~s~t~--rHl~EFt~lE~e~a~~~~~~d~m~~~e~li 362 (435)
..+. |+|++|+|||+|..... -=.-||+|+|.+....+ -.+.....++++
T Consensus 110 ~~LPlr~~~~~~~FR~E~~~~~Gl~R~reF~q~e~~~~~~~-~~~a~~~~~~i~ 162 (255)
T cd00779 110 KQLPLNLYQIQTKFRDEIRPRFGLMRGREFLMKDAYSFDID-EESLEETYEKMY 162 (255)
T ss_pred hhCCHHHHhCcceecCCCCCCCceeeeeeEeHhhheeccCC-HHHHHHHHHHHH
Confidence 1344 99999999999942111 13469999999988764 345555444443
No 71
>PRK09194 prolyl-tRNA synthetase; Provisional
Probab=97.86 E-value=9.9e-05 Score=80.23 Aligned_cols=123 Identities=21% Similarity=0.230 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccC--CC------CCcceeEe-ccCCCceeeccChH-----HHHhhhcc
Q 013865 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS--SE------GGSAVFRL-DYKGQSACLAQSPQ-----LHKQMSIC 311 (435)
Q Consensus 246 ~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~--~e------gga~~F~v-~~~~~~~~L~~Spq-----l~lq~~i~ 311 (435)
.-++++..|.+.+|+.|...||.||.||.|.... .. -+.+.|.+ +-.+++++|+-..+ ++...+..
T Consensus 45 ~g~~~~~~i~~~i~~~~~~~G~~ei~~P~l~~~~l~~~sg~~~~~~~emf~~~d~~~~~l~LrPt~e~~~~~~~~~~~~s 124 (565)
T PRK09194 45 LGLRVLRKIENIVREEMNKIGAQEVLMPALQPAELWQESGRWEEYGPELLRLKDRHGRDFVLGPTHEEVITDLVRNEIKS 124 (565)
T ss_pred cHHHHHHHHHHHHHHHHHHcCCEEEECcccCcHHHHhhcCCccccchhceEEecCCCCEEEECCCChHHHHHHHHhhhhh
Confidence 3466888999999999999999999999998443 11 13457776 44578899986333 33332221
Q ss_pred -CCC-ceeEEEecceecCC-CCCC-ccccccccceeeeeccccHHHHHHHHHHHH---HHHHhhh
Q 013865 312 -GDF-GRVFETGPVFRAED-SYTH-RHLCEFTGLDVEMEIKKHYSEVMDIVDRLF---VTIFDGL 369 (435)
Q Consensus 312 -~g~-~rVfeIgp~FR~E~-s~t~-rHl~EFt~lE~e~a~~~~~~d~m~~~e~li---~~i~~~~ 369 (435)
..+ -|.|+|+++||.|. .... -=.-||+|.|.|....+ -.+.....+.++ ..+|+.+
T Consensus 125 ~~~LP~r~yqi~~~fR~E~rp~~Gl~R~reF~q~d~~~f~~~-~~~a~~~~~~~~~~~~~i~~~l 188 (565)
T PRK09194 125 YKQLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHAD-EESLDETYDAMYQAYSRIFDRL 188 (565)
T ss_pred cccCCeEEEEeeCCccCCCCCCCcccccccEEEeeEEEEcCC-hHHHHHHHHHHHHHHHHHHHHh
Confidence 122 39999999999994 2111 02469999999998764 334443444444 4555544
No 72
>PF13393 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI_E 3HRK_A 3LC0_A 1Z7N_A 1Z7M_D 3NET_A 1H4V_B 3OD1_A 4E51_B 3RAC_A ....
Probab=97.85 E-value=0.00011 Score=73.41 Aligned_cols=117 Identities=21% Similarity=0.298 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccC------CCCCcceeEe-ccCCCceeec--cChHHHHhhhc---cCC
Q 013865 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS------SEGGSAVFRL-DYKGQSACLA--QSPQLHKQMSI---CGD 313 (435)
Q Consensus 246 ~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~------~egga~~F~v-~~~~~~~~L~--~Spql~lq~~i---~~g 313 (435)
.-++.+..|.+.+++.|..+||.+|.||++.... .+...+.|.+ +--|..+.|| ..+++-.-.+. ...
T Consensus 8 ~~~~~~~~i~~~l~~~f~~~Gy~~i~~P~le~~~~~~~~~~~~~~~~~~~~D~~G~~l~LR~D~T~~iaR~~a~~~~~~~ 87 (311)
T PF13393_consen 8 EEARKRERIESKLREVFERHGYEEIETPLLEYYELFLDKSGEDSDNMYRFLDRSGRVLALRPDLTVPIARYVARNLNLPR 87 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-EE-B--SEEEHHHHHCHSSTTGGCSEEEECTTSSEEEE-SSSHHHHHHHHHHCCGSSS
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEECCeEeecHHhhhccccchhhhEEEEecCCcEeccCCCCcHHHHHHHHHhcCcCC
Confidence 4567788999999999999999999999997542 1112245655 3466777777 33344332221 234
Q ss_pred CceeEEEecceecCCCCCCccccccccceeeeeccccHH---HHHHHHHHHHH
Q 013865 314 FGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYS---EVMDIVDRLFV 363 (435)
Q Consensus 314 ~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~~---d~m~~~e~li~ 363 (435)
.-|+|.+|+|||.+.. ...+.-||+|+.+|.-..++.. |++.++.+++.
T Consensus 88 ~~r~~y~g~vfR~~~~-~~g~~re~~Q~g~Eiig~~~~~~daEvi~l~~e~l~ 139 (311)
T PF13393_consen 88 PKRYYYIGPVFRYERP-GKGRPREFYQCGFEIIGSSSLEADAEVIKLADEILD 139 (311)
T ss_dssp SEEEEEEEEEEEEETT-TTTBESEEEEEEEEEESSSSHHHHHHHHHHHHHHHH
T ss_pred CceEEEEcceeecccc-CCCCCceeEEEEEEEECCCCHHHHHHHHHHHHHHHH
Confidence 5799999999999975 3446689999999987765454 77777777775
No 73
>cd00774 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP binding and hydrolysis. This alignment contains only sequences from the GlyRS form which homodimerizes. The heterotetramer glyQ is in a different family of class II aaRS. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the N-terminus of the accessory subunit of mitochondrial polymerase gamma (Pol gamma b). Pol gamma b stimulates processive DNA synthesis and is functional as a homodimer, which can associate with the catalytic subunit Pol gamma alpha to form a heterotrimer. Despite significant both structural and sequence similarity with Gly
Probab=97.85 E-value=3.9e-05 Score=75.05 Aligned_cols=96 Identities=20% Similarity=0.280 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHHHhhcCC--eEEeeCceeeccCCCCCcceeEec-----cCCCceeecc--Ch---HHHHhhhccC--
Q 013865 247 IFRIQSQVGNIFRQFLLSEN--FVEIHTPKLIAGSSEGGSAVFRLD-----YKGQSACLAQ--SP---QLHKQMSICG-- 312 (435)
Q Consensus 247 i~~~rs~i~~~~r~fl~~~g--F~EV~TP~l~~~~~egga~~F~v~-----~~~~~~~L~~--Sp---ql~lq~~i~~-- 312 (435)
-.+++..|.+.+|+.|...| |.||.||+|... +.|.+. .-+..+||+- .| -.++......
T Consensus 31 g~~l~~~i~~~~~~~~~~~g~~~~~i~tP~i~~~------~mf~~~~g~~d~~~~~~~Lrp~~~~~~~~~~~~~~~~~~~ 104 (254)
T cd00774 31 GVELKNNIKSAWRKSFVLEEEDMLEIDSPIITPE------LMFKTSIGPVESGGNLGYLRPETAQGIFVNFKNLLEFNRR 104 (254)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCeEEEeccccCCH------HHheeeecccCCCCcccccCCcccchHHHHHHHHHHHhCC
Confidence 45678899999999999885 999999999753 566664 3456788874 32 1222222211
Q ss_pred CC-ceeEEEecceecCCCCC--Cccccccccceeeeecc
Q 013865 313 DF-GRVFETGPVFRAEDSYT--HRHLCEFTGLDVEMEIK 348 (435)
Q Consensus 313 g~-~rVfeIgp~FR~E~s~t--~rHl~EFt~lE~e~a~~ 348 (435)
.+ =|+|+||+|||+|.+.. .-=.-||||+|+|.-..
T Consensus 105 ~lP~~~~qig~~fR~E~~~~~gl~R~ReF~q~d~~~f~~ 143 (254)
T cd00774 105 KLPFGVAQIGKSFRNEISPRNGLFRVREFTQAEIEFFVD 143 (254)
T ss_pred CCCchhhhhchhhccccCcccceeeeccchhhheeeeEC
Confidence 23 28999999999998522 12457999999987543
No 74
>cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain. SerRS is responsible for the attachment of serine to the 3' OH group of ribose of the appropriate tRNA. This domain It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. SerRS synthetase is a homodimer.
Probab=97.83 E-value=6.4e-05 Score=75.27 Aligned_cols=115 Identities=15% Similarity=0.229 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCC---CC-----CcceeEeccCCCceeeccChHHHHhhhccC-----
Q 013865 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS---EG-----GSAVFRLDYKGQSACLAQSPQLHKQMSICG----- 312 (435)
Q Consensus 246 ~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~---eg-----ga~~F~v~~~~~~~~L~~Spql~lq~~i~~----- 312 (435)
.-.+++.+|.+++++.+.+.||.||.||.|..... .| +.+.|.++ +.+++|+-..+..+=.+...
T Consensus 50 ~g~~l~~~l~~~~~~~~~~~G~~ev~~P~l~~~~l~~~sg~~~~~~~~~f~v~--~~~~~L~pt~e~~~~~l~~~~~~s~ 127 (297)
T cd00770 50 DGALLERALINFALDFLTKRGFTPVIPPFLVRKEVMEGTGQLPKFDEQLYKVE--GEDLYLIATAEVPLAALHRDEILEE 127 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEECcccccHHHHhhcCcCccChhcccEec--CCCEEEeecCCHHHHHHHhcccCCH
Confidence 46788899999999999999999999999986541 11 23456664 37788886665544433322
Q ss_pred -CC-ceeEEEecceecCCC------CCCccccccccceeeeeccccHHHHHHHHHHHHHH
Q 013865 313 -DF-GRVFETGPVFRAEDS------YTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVT 364 (435)
Q Consensus 313 -g~-~rVfeIgp~FR~E~s------~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~ 364 (435)
.+ =|+|++|+|||+|.+ .+.--.-||+|.|.+ .|... ++..+..++++..
T Consensus 128 ~~LPlr~~~~~~~fR~E~~~~g~~~~GL~R~reF~~~e~~-~f~~~-e~~~~~~~~~l~~ 185 (297)
T cd00770 128 EELPLKYAGYSPCFRKEAGSAGRDTRGLFRVHQFEKVEQF-VFTKP-EESWEELEELISN 185 (297)
T ss_pred hhCCchheecChhHhCccccCCCCCCCceEEEeeeeeeEE-EEECc-hHHHHHHHHHHHH
Confidence 12 389999999999975 233356799999996 45432 5555555555543
No 75
>PRK12293 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=97.78 E-value=0.00014 Score=72.39 Aligned_cols=113 Identities=19% Similarity=0.321 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCCC---CCcceeEe-ccCCCceeec--cChHHHHhhhc---cCC-Cc
Q 013865 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSE---GGSAVFRL-DYKGQSACLA--QSPQLHKQMSI---CGD-FG 315 (435)
Q Consensus 246 ~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~e---gga~~F~v-~~~~~~~~L~--~Spql~lq~~i---~~g-~~ 315 (435)
.-...+..|.+.+++.|...||-+|.||++-....- ...+.|++ +.-|+.+-|| ..+++-.-.+- -.. --
T Consensus 17 ~e~~~~~~i~~~l~~vf~~~Gy~~I~tP~lE~~e~~~~~~~~~~y~~~D~~g~~l~LRpD~T~~iaR~~a~~~~~~~~p~ 96 (281)
T PRK12293 17 KSAKLKREIENVASEILYENGFEEIVTPFFSYHQHQSIADEKELIRFSDEKNHQISLRADSTLDVVRIVTKRLGRSTEHK 96 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCeEeeccceeehhhhcccchhceEEEECCCCCEEEECCcCCHHHHHHHHHhcccCCCce
Confidence 445577889999999999999999999999643321 12346665 3356777777 44444432111 011 23
Q ss_pred eeEEEecceecCCCCCCccccccccceeeeeccccHHHHHHHHHHHHHHH
Q 013865 316 RVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTI 365 (435)
Q Consensus 316 rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i 365 (435)
|.|.+|+|||.|. .||+|+.+|+-..++..|++.++-+.+..+
T Consensus 97 r~~Y~g~vfR~~~-------rEf~Q~GvEliG~~~~~Evi~la~~~l~~l 139 (281)
T PRK12293 97 KWFYIQPVFRYPS-------NEIYQIGAELIGEEDLSEILNIAAEIFEEL 139 (281)
T ss_pred eEEEeccEEecCC-------CcccccCeEeeCCCCHHHHHHHHHHHHHHc
Confidence 9999999999874 599999999998877777777777766654
No 76
>PLN02908 threonyl-tRNA synthetase
Probab=97.76 E-value=0.00012 Score=81.44 Aligned_cols=120 Identities=15% Similarity=0.136 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCC--CC------CcceeEeccCCCceeeccChH-----HHHhhhcc
Q 013865 245 QGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS--EG------GSAVFRLDYKGQSACLAQSPQ-----LHKQMSIC 311 (435)
Q Consensus 245 ~~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~--eg------ga~~F~v~~~~~~~~L~~Spq-----l~lq~~i~ 311 (435)
-.-.+++..|++.+|+.+..+||.||.||.|..... .+ +.+.|.++--+..++|+-... +|......
T Consensus 318 P~g~~i~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sGh~~~~~~~mf~~~~~~~~~~Lrp~~~~~~~~~~~~~~~s 397 (686)
T PLN02908 318 PHGARIYNKLMDFIREQYWERGYDEVITPNIYNMDLWETSGHAAHYKENMFVFEIEKQEFGLKPMNCPGHCLMFAHRVRS 397 (686)
T ss_pred chHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHhhcCCccccchhccEEecCCeeEEEcCCCcHHHHHHHhccccC
Confidence 356788999999999999999999999999975431 11 123566554467888884432 22222211
Q ss_pred C-CC-ceeEEEecceecCCCC---CCccccccccceeeeeccccHHHHHHHHHHHHHHHH
Q 013865 312 G-DF-GRVFETGPVFRAEDSY---THRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIF 366 (435)
Q Consensus 312 ~-g~-~rVfeIgp~FR~E~s~---t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~ 366 (435)
- .+ =|+|++|+|||+|.+. +..=.-||||.|.+. |+. .+++.+.+++++..+.
T Consensus 398 ~r~LPlr~~~~g~~fR~E~~~~l~Gl~RvReF~q~d~~i-f~~-~~q~~~e~~~~l~~~~ 455 (686)
T PLN02908 398 YRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHI-FCR-EDQIKDEVKGVLDFLD 455 (686)
T ss_pred hhhCCHhHEEeeccccCCCCcCCcCccccccEEEeeEEE-EcC-HHHHHHHHHHHHHHHH
Confidence 1 22 2899999999999863 333456999999998 654 5667776666665444
No 77
>PLN02788 phenylalanine-tRNA synthetase
Probab=97.75 E-value=0.00013 Score=75.75 Aligned_cols=111 Identities=13% Similarity=0.188 Sum_probs=74.4
Q ss_pred HHHHHHHHhhcC---CeEEee--CceeeccC---------CCCCcceeEeccCCCceeec--cChHHHHhhhccCCCcee
Q 013865 254 VGNIFRQFLLSE---NFVEIH--TPKLIAGS---------SEGGSAVFRLDYKGQSACLA--QSPQLHKQMSICGDFGRV 317 (435)
Q Consensus 254 i~~~~r~fl~~~---gF~EV~--TP~l~~~~---------~egga~~F~v~~~~~~~~L~--~Spql~lq~~i~~g~~rV 317 (435)
+...|+++|... ||.+++ .|+.+..- -+++-+.--+-|.+...-|| .|+--.. ++..+-.|+
T Consensus 73 ~~~~i~~~f~~~~~~gf~~~~~~~~iv~~~~NFD~L~~P~dHPaR~~~DTfy~~~~~lLRTHTSa~q~~--~l~~~~~~~ 150 (402)
T PLN02788 73 LKNAIYDYFDENYSNKFKKFDDLSPIVSTKQNFDDVLVPPDHVSRSYNDTYYVDAQTVLRCHTSAHQAE--LLRAGHTHF 150 (402)
T ss_pred HHHHHHHHHhhcccCCcEEecCCCCccchhhhhhhhCCCCCCCccCccceEEecCCccccCCCcHHHHH--HHHhCCCcE
Confidence 556677788776 999998 56543210 01111122234667777777 4442221 222356799
Q ss_pred EEEecceecCCCCCCccccccccceeeeec--------------cccHHHHHHHHHHHHHHHHhh
Q 013865 318 FETGPVFRAEDSYTHRHLCEFTGLDVEMEI--------------KKHYSEVMDIVDRLFVTIFDG 368 (435)
Q Consensus 318 feIgp~FR~E~s~t~rHl~EFt~lE~e~a~--------------~~~~~d~m~~~e~li~~i~~~ 368 (435)
+.+|.|||++.. +.+|.|+|.|+|.-+.+ . ...++...++.++..+|..
T Consensus 151 ~~~g~VyRrD~i-D~tH~p~FhQ~EG~~v~~~~~~~~~~~~~~~~-~~~dLKg~Le~l~~~lfg~ 213 (402)
T PLN02788 151 LVTGDVYRRDSI-DATHYPVFHQMEGVRVFSPEEWEASGLDGTDL-AAEDLKKTLEGLARHLFGD 213 (402)
T ss_pred EEEeeEeecCCC-CcccCccceeEEEEEEeccccccccccccccc-CHHHHHHHHHHHHHHhcCC
Confidence 999999999995 89999999999987765 2 2568888889988888654
No 78
>PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=97.74 E-value=0.00017 Score=74.99 Aligned_cols=119 Identities=20% Similarity=0.214 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCC--C-C----CcceeEe-cc-CCCceeec--cChHHHHhhhcc---
Q 013865 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS--E-G----GSAVFRL-DY-KGQSACLA--QSPQLHKQMSIC--- 311 (435)
Q Consensus 246 ~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~--e-g----ga~~F~v-~~-~~~~~~L~--~Spql~lq~~i~--- 311 (435)
.-.+.+..+...+++.|..+||.||.||++-.... . + ..+.|.+ +- -|+.+.|| ..+++-.-.+-.
T Consensus 15 ~~~~~~~~i~~~l~~~f~~~Gy~~i~tP~lE~~e~~~~~~g~~~~~~~~~f~d~~~g~~l~LRpD~T~~iaR~~a~~~~~ 94 (391)
T PRK12292 15 EEARKIEEIRRRLLDLFRRWGYEEVITPTLEYLDTLLAGGGAILDLRTFKLVDQLSGRTLGLRPDMTAQIARIAATRLAN 94 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCceeeCcchhhHHHHhccCCccchhhhEEEeecCCCCEEEECCCCcHHHHHHHHHhccC
Confidence 45567888999999999999999999999963221 1 1 1225655 33 46777887 455554321111
Q ss_pred -CCCceeEEEecceecCCCCCCccccccccceeeeeccccH---HHHHHHHHHHHHHH
Q 013865 312 -GDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHY---SEVMDIVDRLFVTI 365 (435)
Q Consensus 312 -~g~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~---~d~m~~~e~li~~i 365 (435)
..--|.|++|+|||.|.. ..-+.-||+|+.+|+-..++. -|++.++-+++..+
T Consensus 95 ~~~p~r~~y~g~vfR~~~~-~~gr~ref~Q~g~EiiG~~~~~aDaEvi~l~~~~l~~l 151 (391)
T PRK12292 95 RPGPLRLCYAGNVFRAQER-GLGRSREFLQSGVELIGDAGLEADAEVILLLLEALKAL 151 (391)
T ss_pred CCCCeEEEeeceeeecCCC-cCCCccchhccceEEeCCCCchHHHHHHHHHHHHHHHc
Confidence 112399999999999985 344578999999998665433 46677776666554
No 79
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed
Probab=97.72 E-value=0.00014 Score=79.15 Aligned_cols=102 Identities=20% Similarity=0.187 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCC--C-CC-----cceeEe-ccCCCceeecc-ChHH----HHhhhcc
Q 013865 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS--E-GG-----SAVFRL-DYKGQSACLAQ-SPQL----HKQMSIC 311 (435)
Q Consensus 246 ~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~--e-gg-----a~~F~v-~~~~~~~~L~~-Spql----~lq~~i~ 311 (435)
.-.+++..|.+.+++.+...||.||.||+|..... . |. .+.|.+ +--|+.++||- +... |.+....
T Consensus 204 ~~~~~~~~l~~~~~~~~~~~Gy~ev~tP~le~~~l~~~sg~~~~~~~~my~~~d~~~~~~~LRP~~~~~~~~~~~~~~~s 283 (575)
T PRK12305 204 KGAIIRREIEDYLRKEHLKRGYEFVYTPHIGKSDLWKTSGHLDNYKENMFPPMEIDEEEYYLKPMNCPGHILIYKSRLRS 283 (575)
T ss_pred cHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhhcCCcccchhhcccccccCCceEEEecCCCHHHHHHHhcccCC
Confidence 45667899999999999999999999999975431 1 21 235655 33467888882 2222 2222111
Q ss_pred -CCCc-eeEEEecceecCCCCCCc---cccccccceeeeecc
Q 013865 312 -GDFG-RVFETGPVFRAEDSYTHR---HLCEFTGLDVEMEIK 348 (435)
Q Consensus 312 -~g~~-rVfeIgp~FR~E~s~t~r---Hl~EFt~lE~e~a~~ 348 (435)
..+. |.|++|+|||+|.+...+ =.-||+|+|++. |.
T Consensus 284 ~~~lP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~~~~i-f~ 324 (575)
T PRK12305 284 YRDLPLRLAEFGTVYRYEKSGVLHGLTRVRGFTQDDAHI-FC 324 (575)
T ss_pred hhhCCHhhEEecccccCCCCCCCcCcccccCeEEcceEE-Ee
Confidence 1333 999999999999863211 235999999995 43
No 80
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=97.72 E-value=0.00019 Score=75.25 Aligned_cols=115 Identities=16% Similarity=0.272 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCC-C--C-----CcceeEeccCCCceeeccChHHHHhhhccC-----
Q 013865 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS-E--G-----GSAVFRLDYKGQSACLAQSPQLHKQMSICG----- 312 (435)
Q Consensus 246 ~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~-e--g-----ga~~F~v~~~~~~~~L~~Spql~lq~~i~~----- 312 (435)
.-.++..+|++++++.+.+.||.||.||.|..... + | +.+.|.+. +.++||+-..+..+-.+...
T Consensus 171 ~g~~l~~aL~~~~~~~~~~~G~~~v~~P~lv~~~~~~~~G~~~~f~~~~y~i~--~~~~~L~pTsE~~~~~~~~~~i~s~ 248 (418)
T TIGR00414 171 DGAKLERALINFMLDLLEKNGYQEIYPPYLVNEESLDGTGQLPKFEEDIFKLE--DTDLYLIPTAEVPLTNLHRNEILEE 248 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHhhcCccccccccceEec--CCCEEEEeCCcHHHHHHHhCcCCCh
Confidence 45777889999999999999999999999986541 1 1 23356664 46788887765444322221
Q ss_pred -CC-ceeEEEecceecCCCC------CCccccccccceeeeeccccHHHHHHHHHHHHHH
Q 013865 313 -DF-GRVFETGPVFRAEDSY------THRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVT 364 (435)
Q Consensus 313 -g~-~rVfeIgp~FR~E~s~------t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~ 364 (435)
.+ =|+|++|+|||+|-+. +.-=.-||++.|. ..|.. -++..+..++++..
T Consensus 249 ~~LPlr~~~~s~~FR~E~g~~G~~t~GL~Rv~qF~k~E~-~~f~~-~e~s~~~~~~~~~~ 306 (418)
T TIGR00414 249 EELPIKYTAHSPCFRSEAGSYGKDTKGLIRVHQFNKVEL-VKFCK-PEESAEELEEMTSD 306 (418)
T ss_pred HhCCeeEEEEcccccCCCCccCCCCCccccccceeeeeE-EEEcC-HHHHHHHHHHHHHH
Confidence 22 3899999999999631 2223459999999 55664 56777777766654
No 81
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=97.68 E-value=0.00023 Score=74.83 Aligned_cols=115 Identities=12% Similarity=0.221 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHHHHhh-cCCeEEeeCceeeccCC-C--C-----CcceeEeccCCCceeeccChHHHHhhhccCC---
Q 013865 246 GIFRIQSQVGNIFRQFLL-SENFVEIHTPKLIAGSS-E--G-----GSAVFRLDYKGQSACLAQSPQLHKQMSICGD--- 313 (435)
Q Consensus 246 ~i~~~rs~i~~~~r~fl~-~~gF~EV~TP~l~~~~~-e--g-----ga~~F~v~~~~~~~~L~~Spql~lq~~i~~g--- 313 (435)
.-.++..+|++++++.+. +.||.||.||.|..... + | +.+.|.+. +.++||+-..+..+=.+....
T Consensus 168 ~ga~L~~aL~~~~~~~~~~~~G~~ev~~P~lv~~~~~~~~G~~~~f~~~ly~i~--~~~~~L~pTsE~~l~~l~~~~~~s 245 (425)
T PRK05431 168 DGARLERALIQFMLDLHTEEHGYTEVIPPYLVNEESMYGTGQLPKFEEDLYKIE--DDDLYLIPTAEVPLTNLHRDEILD 245 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCEEEeccccccHHHHhhcCccccchhhceEec--CCCEEEEeCCcHHHHHHHhcccCC
Confidence 456688899999999998 99999999999986431 1 1 22367664 578899876655543222221
Q ss_pred ---C-ceeEEEecceecCCCC------CCccccccccceeeeeccccHHHHHHHHHHHHHH
Q 013865 314 ---F-GRVFETGPVFRAEDSY------THRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVT 364 (435)
Q Consensus 314 ---~-~rVfeIgp~FR~E~s~------t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~ 364 (435)
+ =|+|++++|||.|-+. +.-=.-||+|.|.+ .|.. -++..+..++|+..
T Consensus 246 ~~dLPlr~~~~s~~fR~Eag~~g~~~~GL~Rv~qF~k~E~~-~f~~-~e~s~~~~~~~l~~ 304 (425)
T PRK05431 246 EEELPLKYTAYSPCFRSEAGSAGRDTRGLIRVHQFDKVELV-KFTK-PEDSYAELEELTAN 304 (425)
T ss_pred HHhCCeeEEEEcCEecCCCCcCCCCCCceeeeeeeeeeeEE-EEEC-HHHHHHHHHHHHHH
Confidence 2 3899999999999742 11134599999998 5664 47777777766654
No 82
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed
Probab=97.67 E-value=0.00027 Score=77.77 Aligned_cols=101 Identities=24% Similarity=0.317 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccC---CCC-----CcceeEe-ccCCCceeeccC--hH---HHHhhhcc
Q 013865 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS---SEG-----GSAVFRL-DYKGQSACLAQS--PQ---LHKQMSIC 311 (435)
Q Consensus 246 ~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~---~eg-----ga~~F~v-~~~~~~~~L~~S--pq---l~lq~~i~ 311 (435)
.-.+++..|.+.+++.|...||.||.||+|.... ..| ..+.|.+ +--|+.+.||-- |. +|.+....
T Consensus 268 ~~~~~~~~i~~~~~~~~~~~Gy~ei~tP~le~~~l~~~~g~~~~~~~~my~~~d~~~~~~~LRP~~~~~~~r~~~~~~~s 347 (638)
T PRK00413 268 KGWTIRRELERYIRRKLRKAGYQEVKTPQILDRELWETSGHWDHYRENMFPTTESDGEEYALKPMNCPGHVQIYKQGLRS 347 (638)
T ss_pred cHHHHHHHHHHHHHHHHHHCCCEEEECCeeCCHHHHHhcCChhhhhhccceeecCCCcEEEEecCCcHHHHHHHhCcCCC
Confidence 4566789999999999999999999999997543 112 1235664 334678888732 22 23332211
Q ss_pred -CCCc-eeEEEecceecCCCCC---Cccccccccceeeee
Q 013865 312 -GDFG-RVFETGPVFRAEDSYT---HRHLCEFTGLDVEME 346 (435)
Q Consensus 312 -~g~~-rVfeIgp~FR~E~s~t---~rHl~EFt~lE~e~a 346 (435)
..+. |.|++|+|||.|.+.. ..=.-||||+|++.-
T Consensus 348 ~~~lP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~~~~~~ 387 (638)
T PRK00413 348 YRDLPLRLAEFGTVHRYEPSGALHGLMRVRGFTQDDAHIF 387 (638)
T ss_pred hhhCCceeeeccCeecCCCCCCCcCcceeeeeEEeeEEEE
Confidence 1333 9999999999998632 112359999999973
No 83
>PLN02972 Histidyl-tRNA synthetase
Probab=97.66 E-value=0.00028 Score=78.36 Aligned_cols=120 Identities=14% Similarity=0.255 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCC------CCCcceeEe-ccCCCceeec--cChHHHHhhhccC-C
Q 013865 244 NQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS------EGGSAVFRL-DYKGQSACLA--QSPQLHKQMSICG-D 313 (435)
Q Consensus 244 ~~~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~------egga~~F~v-~~~~~~~~L~--~Spql~lq~~i~~-g 313 (435)
.-.-..+|..|...+++.|..+||.||.||++-.... +.....|.+ +.-|+.+.|| ..+.+-.-.+.-. .
T Consensus 337 lP~e~~~re~I~~~L~~vFk~hGy~eI~TPvfE~~Ell~~k~Ged~k~mY~f~D~gGr~LaLRPDlTvPiAR~vA~n~~~ 416 (763)
T PLN02972 337 AKEQMAIREKAFSIITSVFKRHGATALDTPVFELRETLMGKYGEDSKLIYDLADQGGELCSLRYDLTVPFARYVAMNGIT 416 (763)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCEEccCCcccchHHhhcccCcchhheEEEECCCCCEEEeCCCChHHHHHHHHhCCCC
Confidence 3456778999999999999999999999999864321 111125654 3456777777 3333332111101 1
Q ss_pred CceeEEEecceecCCCCCCccccccccceeeeecc-ccH---HHHHHHHHHHHHH
Q 013865 314 FGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIK-KHY---SEVMDIVDRLFVT 364 (435)
Q Consensus 314 ~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~-~~~---~d~m~~~e~li~~ 364 (435)
--|.|+||+|||.|... .-+.-||+||++|+... +.. -|++.++-+.+..
T Consensus 417 p~KrYyiG~VFR~e~pq-kGR~REF~Q~G~EIIG~~~~~~aDAEVI~La~E~L~~ 470 (763)
T PLN02972 417 SFKRYQIAKVYRRDNPS-KGRYREFYQCDFDIAGVYEPMGPDFEIIKVLTELLDE 470 (763)
T ss_pred cceEEEeccEEecCCCC-CCCCccceEEeEEEEcCCCcchhhHHHHHHHHHHHHh
Confidence 24888999999999863 34578999999999774 221 4677777777654
No 84
>CHL00201 syh histidine-tRNA synthetase; Provisional
Probab=97.63 E-value=0.00028 Score=74.24 Aligned_cols=118 Identities=20% Similarity=0.294 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCC--C--C-C-----cceeEe-ccCCCceeec--cChHHHHh---hh
Q 013865 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS--E--G-G-----SAVFRL-DYKGQSACLA--QSPQLHKQ---MS 309 (435)
Q Consensus 246 ~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~--e--g-g-----a~~F~v-~~~~~~~~L~--~Spql~lq---~~ 309 (435)
.-...+..|.+.+++.|...||.||.||++-.... . | . .+.|.+ +.-|+.+.|| ..|++..- ..
T Consensus 16 ~~~~~~~~i~~~i~~~~~~~Gy~~I~TP~~E~~e~~~~~~G~~~~~~~~~my~~~d~~g~~l~LRpd~T~~iaR~~~~~~ 95 (430)
T CHL00201 16 DEINYWQFIHDKALTLLSLANYSEIRTPIFENSSLYDRGIGETTDIVNKEMYRFTDRSNRDITLRPEGTAGIVRAFIENK 95 (430)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCeeecCcccchHHHHhcccCCcccccccceEEEEcCCCCEEEeCCCCcHHHHHHHHHcc
Confidence 34556888999999999999999999999875331 1 1 1 235665 3456778888 44544432 11
Q ss_pred cc-CCCc-eeEEEecceecCCCCCCccccccccceeeeeccccH---HHHHHHHHHHHHH
Q 013865 310 IC-GDFG-RVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHY---SEVMDIVDRLFVT 364 (435)
Q Consensus 310 i~-~g~~-rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~---~d~m~~~e~li~~ 364 (435)
.. .... |.|++|+|||.|.+...|- -||+|+++|+-..++. -|++.++-+.+..
T Consensus 96 ~~~~~~p~R~~y~g~vfR~e~~q~GR~-Ref~Q~g~EiiG~~~~~aD~Evi~l~~~~l~~ 154 (430)
T CHL00201 96 MDYHSNLQRLWYSGPMFRYERPQSGRQ-RQFHQLGIEFIGSIDARADTEVIHLAMQIFNE 154 (430)
T ss_pred ccccCCCeEEEEEcceecCCCCcCCcc-ceeEEeceEEECCCChhhHHHHHHHHHHHHHH
Confidence 11 1233 9999999999998765554 5999999998765432 2566666666554
No 85
>PRK12420 histidyl-tRNA synthetase; Provisional
Probab=97.62 E-value=0.00033 Score=73.43 Aligned_cols=119 Identities=19% Similarity=0.283 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccC--C---CCCc----ceeEe-ccCCCceeec--cChHHHHhhhccC-
Q 013865 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS--S---EGGS----AVFRL-DYKGQSACLA--QSPQLHKQMSICG- 312 (435)
Q Consensus 246 ~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~--~---egga----~~F~v-~~~~~~~~L~--~Spql~lq~~i~~- 312 (435)
.-..++..|.+.+++.|..+||.||.||.|.... . .++. ..|.+ +--|+.+.|| ..+++-.-.+.-.
T Consensus 16 ~~~~~~~~i~~~l~~~f~~~Gy~~i~tP~lE~~~~~~~~~~~~~~~~~~~~~~~D~~g~~l~LRpD~T~~iaR~va~~~~ 95 (423)
T PRK12420 16 EEQVLRNKIKRALEDVFERYGCKPLETPTLNMYELMSSKYGGGDEILKEIYTLTDQGKRDLALRYDLTIPFAKVVAMNPN 95 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEeccccccchHHHHhcccCCCcccccceEEEecCCCceecccccccHHHHHHHHhCcC
Confidence 4556678899999999999999999999997542 1 1121 25654 3456777777 3444432211111
Q ss_pred -CCc-eeEEEecceecCCCCCCccccccccceeeeeccccH---HHHHHHHHHHHHHH
Q 013865 313 -DFG-RVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHY---SEVMDIVDRLFVTI 365 (435)
Q Consensus 313 -g~~-rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~---~d~m~~~e~li~~i 365 (435)
.+. |.|++|+|||.|... .-+.-||+|+.+|+-..++. -|++.++-+.+..+
T Consensus 96 ~~~p~r~~y~g~vfR~~~~~-~gr~rE~~Q~g~EiiG~~~~~adaEvi~la~~~l~~l 152 (423)
T PRK12420 96 IRLPFKRYEIGKVFRDGPIK-QGRFREFIQCDVDIVGVESVMAEAELMSMAFELFRRL 152 (423)
T ss_pred CCCCeeEEEEcceECCCCCC-CCccceeEECCeeeECCCCCcccHHHHHHHHHHHHHC
Confidence 223 899999999999853 44678999999998654322 46777776666643
No 86
>TIGR00418 thrS threonyl-tRNA synthetase. This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether..
Probab=97.62 E-value=0.00022 Score=77.41 Aligned_cols=116 Identities=17% Similarity=0.220 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCC--C-C-----CcceeEecc-CCCceeeccChHH-----HHhhhcc-
Q 013865 247 IFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS--E-G-----GSAVFRLDY-KGQSACLAQSPQL-----HKQMSIC- 311 (435)
Q Consensus 247 i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~--e-g-----ga~~F~v~~-~~~~~~L~~Spql-----~lq~~i~- 311 (435)
-.+++..|.+.+|+.+...||.||.||+|..... . | +.+.|.+.- -|+.++||-...- |.+....
T Consensus 199 g~~~~~~i~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~emy~~~d~~~~~~~LrP~~~~~i~~~~~~~~~s~ 278 (563)
T TIGR00418 199 GATIRNLLEDFVRQKQIKYGYMEVETPIMYDLELWEISGHWDNYKERMFPFTELDNREFMLKPMNCPGHFLIFKSSLRSY 278 (563)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHhcCCcccchhhcceeccCCCceEEEecCCCHHHHHHHhCcCCCh
Confidence 4557789999999999999999999999975431 1 2 122455422 3578899844432 3332222
Q ss_pred CCCc-eeEEEecceecCCCCCC----ccccccccceeeeeccc-----cHHHHHHHHHHHHH
Q 013865 312 GDFG-RVFETGPVFRAEDSYTH----RHLCEFTGLDVEMEIKK-----HYSEVMDIVDRLFV 363 (435)
Q Consensus 312 ~g~~-rVfeIgp~FR~E~s~t~----rHl~EFt~lE~e~a~~~-----~~~d~m~~~e~li~ 363 (435)
..+. |+|++|+|||.|.+ +. -=+-||+|.|+|.-... .+.+++.++.+++.
T Consensus 279 ~~lP~rl~~~g~~fR~E~~-g~~~Gl~R~reF~q~~~~~~~~~~~~~~e~~~~i~~~~~~~~ 339 (563)
T TIGR00418 279 RDLPLRIAELGYSHRYEQS-GELHGLMRVRGFTQDDAHIFCTEDQIKEEFKNQFRLIQKVYS 339 (563)
T ss_pred HHCCceeeEeccccCCCCC-cCCcCcccccceEEeeeEEEcCHHHHHHHHHHHHHHHHHHHH
Confidence 1233 99999999999964 31 12359999999976431 02335555555554
No 87
>PRK12444 threonyl-tRNA synthetase; Reviewed
Probab=97.60 E-value=0.00029 Score=77.73 Aligned_cols=112 Identities=17% Similarity=0.191 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHhhcCCeEEeeCceeeccC---CCCCc-----ceeEeccCCCceeeccChHHHHhhhccC------CC
Q 013865 249 RIQSQVGNIFRQFLLSENFVEIHTPKLIAGS---SEGGS-----AVFRLDYKGQSACLAQSPQLHKQMSICG------DF 314 (435)
Q Consensus 249 ~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~---~egga-----~~F~v~~~~~~~~L~~Spql~lq~~i~~------g~ 314 (435)
+++..|.+.+++.+...||.||.||+|.... ..|.. +.|.++--++.++|+-..+-..=.+... ++
T Consensus 275 ~~~~~i~~~~~~~~~~~G~~~v~tP~l~~~~l~~~sG~~~~~~~emy~~d~~~~~~~LrP~~~~~~~~~~~~~~~sy~~L 354 (639)
T PRK12444 275 IIRNELEAFLREIQKEYNYQEVRTPFMMNQELWERSGHWDHYKDNMYFSEVDNKSFALKPMNCPGHMLMFKNKLHSYREL 354 (639)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhhcCChhhhhhhcCeecCCCcEEEEccCCCHHHHHHHhCcccChhhC
Confidence 4556699999999999999999999998643 11221 2443333356778885543332222211 22
Q ss_pred -ceeEEEecceecCCCC---CCccccccccceeeeeccccHHHHHHHHHHHH
Q 013865 315 -GRVFETGPVFRAEDSY---THRHLCEFTGLDVEMEIKKHYSEVMDIVDRLF 362 (435)
Q Consensus 315 -~rVfeIgp~FR~E~s~---t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li 362 (435)
-|.|++|+|||.|.+. +.-=.-||+|.|.+ .|.. -+++...+++++
T Consensus 355 P~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~d~~-~f~~-~~~~~~e~~~~~ 404 (639)
T PRK12444 355 PIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAH-LFVT-PDQIEDEIKSVM 404 (639)
T ss_pred CceeEEeccccCCCCCcCCcCcceeeeeEEccEE-EECC-HHHHHHHHHHHH
Confidence 3999999999999863 21124589999999 6664 344444433333
No 88
>PRK14799 thrS threonyl-tRNA synthetase; Provisional
Probab=97.58 E-value=0.00031 Score=75.92 Aligned_cols=119 Identities=15% Similarity=0.147 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccC--CCCCc------ceeEeccCCCceeeccChH-----HHHhhhccC
Q 013865 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS--SEGGS------AVFRLDYKGQSACLAQSPQ-----LHKQMSICG 312 (435)
Q Consensus 246 ~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~--~egga------~~F~v~~~~~~~~L~~Spq-----l~lq~~i~~ 312 (435)
.=.++|..|...+|+.+.++||.||.||.|.... ..+|- +.|.++--+++++|+--.. +|.+...+-
T Consensus 166 ~G~~i~~~L~~~~r~~~~~~Gy~eV~TP~i~~~eL~k~SGh~~~y~~~mf~~~~~~e~~~LrPm~cp~~~~~~~~~~~Sy 245 (545)
T PRK14799 166 KGQTIRNELIAFMREINDSMGYQEVYTSHVFKTDIWKISGHYTLYRDKLIVFNMEGDEYGVKPMNCPAHILIYKSKPRTY 245 (545)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCeEEECCccchHHHHhhccccccchhhcceeeccCceEEeccCCCHHHHHHHhccccCh
Confidence 5678899999999999999999999999986433 11221 2355544467888884332 333322211
Q ss_pred -CCc-eeEEEecceecCCCCCC---ccccccccceeeeeccccHHHHHHHHHHHHHHHH
Q 013865 313 -DFG-RVFETGPVFRAEDSYTH---RHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIF 366 (435)
Q Consensus 313 -g~~-rVfeIgp~FR~E~s~t~---rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~ 366 (435)
.+. |.|++|+|||.|.+... .=.-||||.|... |+. .+.+.+.+.+++..+.
T Consensus 246 rdLPlR~~e~g~vfR~E~sg~l~GL~RvReF~Q~DaHi-f~~-~~q~~~E~~~~l~~i~ 302 (545)
T PRK14799 246 RDLPIRFSEFGHVYRWEKKGELYGLLRVRGFVQDDGHI-FLR-EDQLREEIKMLISKTV 302 (545)
T ss_pred hhCCHhhEEecceecCCCCCCccccccceeEEEcccEE-EeC-HHHHHHHHHHHHHHHH
Confidence 232 89999999999987431 2356999999998 765 4555455544444333
No 89
>PRK08661 prolyl-tRNA synthetase; Provisional
Probab=97.57 E-value=0.00019 Score=76.43 Aligned_cols=116 Identities=16% Similarity=0.068 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCC---CC------CcceeEeccC-----CCceeeccCh-----HHHH
Q 013865 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS---EG------GSAVFRLDYK-----GQSACLAQSP-----QLHK 306 (435)
Q Consensus 246 ~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~---eg------ga~~F~v~~~-----~~~~~L~~Sp-----ql~l 306 (435)
.-++++..|.+.+++.|...||.||.||.|..... ++ +.+.|.+.-- +.+++|+-.. .+|.
T Consensus 42 ~g~~i~~~i~~~~~~~~~~~G~~ev~~P~l~~~~~~~~~~~h~~~f~~e~~~v~~~~~~~~~e~l~LrPtsE~~i~~~~~ 121 (477)
T PRK08661 42 YGYAIWENIQKILDKLFKETGHENVYFPLLIPESLLEKEKEHVEGFAPEVAWVTHGGGEKLEEKLALRPTSETIIYPMYK 121 (477)
T ss_pred cHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhhhcCchhhcccccEEEEccCCCccCceEEEecCCcHHHHHHHH
Confidence 45678889999999999999999999999976542 22 2346776432 4689999655 3444
Q ss_pred hhhcc-CCC-ceeEEEecceecCCCCCC--ccccccccceeeeeccccHHHHHHHHHHHHH
Q 013865 307 QMSIC-GDF-GRVFETGPVFRAEDSYTH--RHLCEFTGLDVEMEIKKHYSEVMDIVDRLFV 363 (435)
Q Consensus 307 q~~i~-~g~-~rVfeIgp~FR~E~s~t~--rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~ 363 (435)
....+ .++ =|+|++|+|||.|.+ ++ -=.-||+|.|.+..+.+ .++....++.++.
T Consensus 122 ~~i~SyrdLPlrl~q~~~vfR~E~~-~rgl~R~rEF~~~E~h~~~~~-~eea~~e~~~~l~ 180 (477)
T PRK08661 122 KWIQSYRDLPLLYNQWVNVVRWETK-TRPFLRTREFLWQEGHTAHAT-EEEAEEETLEMLE 180 (477)
T ss_pred hhhcchhhcCHHHhcccceeeCCCC-CCCcceeeeEEEcceeeeeCC-HHHHHHHHHHHHH
Confidence 43322 133 289999999999996 43 24569999999998885 7777666666553
No 90
>PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=97.51 E-value=0.00076 Score=70.17 Aligned_cols=119 Identities=13% Similarity=0.122 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCC--C-CCc----ceeEecc--CCCceeec--cChHHHHhhh--cc-
Q 013865 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS--E-GGS----AVFRLDY--KGQSACLA--QSPQLHKQMS--IC- 311 (435)
Q Consensus 246 ~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~--e-gga----~~F~v~~--~~~~~~L~--~Spql~lq~~--i~- 311 (435)
.-.+.+..|.+.+++.|...||.||.||++-.... . .|. ..|++.. -|+.+-|| ..+++-.-.+ ..
T Consensus 19 ~e~~~~~~i~~~l~~~f~~~Gy~~I~tP~~E~~e~~~~~~g~~~~~~~y~f~D~~~g~~l~LRpD~T~~iaR~~a~~~~~ 98 (392)
T PRK12421 19 EEAQKIERLRRRLLDLFASRGYQLVMPPLIEYLESLLTGAGQDLKLQTFKLIDQLSGRLMGVRADITPQVARIDAHLLNR 98 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEeeCcchhhHHHHhccCCccchhceEEEEcCCCCcEEEECCcCCHHHHHHHHhhcCC
Confidence 44567888999999999999999999999864331 1 122 2565432 25666676 3444443111 01
Q ss_pred CCCceeEEEecceecCCCCCCccccccccceeeeeccccHH---HHHHHHHHHHHHH
Q 013865 312 GDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYS---EVMDIVDRLFVTI 365 (435)
Q Consensus 312 ~g~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~~---d~m~~~e~li~~i 365 (435)
..--|.|.+|+|||.+.....| .-||+|+.+|+-..++.. |++.++-+.+..+
T Consensus 99 ~~p~R~~Y~g~VfR~~~~~~gr-~rEf~Q~GvEiiG~~~~~aDaEvi~l~~e~l~~l 154 (392)
T PRK12421 99 EGVARLCYAGSVLHTLPQGLFG-SRTPLQLGAELYGHAGIEADLEIIRLMLGLLRNA 154 (392)
T ss_pred CCceEEEEeeeEEEcCCCcCCC-cCccceeceEEeCCCCchhHHHHHHHHHHHHHHc
Confidence 1235999999999998754444 479999999987755443 7777777777654
No 91
>PLN02530 histidine-tRNA ligase
Probab=97.49 E-value=0.00057 Score=73.06 Aligned_cols=117 Identities=17% Similarity=0.261 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCC--C-CCc----ceeEe-ccCCCceeec--cChHHHHhhhccC---
Q 013865 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS--E-GGS----AVFRL-DYKGQSACLA--QSPQLHKQMSICG--- 312 (435)
Q Consensus 246 ~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~--e-gga----~~F~v-~~~~~~~~L~--~Spql~lq~~i~~--- 312 (435)
.-.+.+..|...+++.|...||.||.||+|-.... . .|. +.|.+ +.-|+.+.|| ..|++..- ++.
T Consensus 82 ~~~~~~~~i~~~~~~~~~~~Gy~~I~tP~lE~~el~~~~~g~~~~~~~y~f~D~~g~~l~LRpD~T~~iaR~--~~~~~~ 159 (487)
T PLN02530 82 EDMRLRNWLFDHFREVSRLFGFEEVDAPVLESEELYIRKAGEEITDQLYNFEDKGGRRVALRPELTPSLARL--VLQKGK 159 (487)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEeccccccchHHHhccccCcccccceEEEECCCCCEEecCCCCcHHHHHH--HHhccc
Confidence 45667889999999999999999999999975321 1 122 25654 4456777777 33444322 211
Q ss_pred --CC-ceeEEEecceecCCCCCCccccccccceeeeecccc---HHHHHHHHHHHHHHH
Q 013865 313 --DF-GRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKH---YSEVMDIVDRLFVTI 365 (435)
Q Consensus 313 --g~-~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~---~~d~m~~~e~li~~i 365 (435)
.+ -|.|++|+|||.|..... +.-||+|+++|+-..++ --|++.++-+.+..+
T Consensus 160 ~~~~P~r~~y~g~vfR~e~~q~g-r~REf~Q~giEiiG~~~~~aDaEvi~l~~~~l~~l 217 (487)
T PLN02530 160 SLSLPLKWFAIGQCWRYERMTRG-RRREHYQWNMDIIGVPGVEAEAELLAAIVTFFKRV 217 (487)
T ss_pred ccCCCeEEEEEcCEEcCcCCCCC-CccceEEcCeeEeCCCCcchhHHHHHHHHHHHHHc
Confidence 12 389999999999986444 46799999999866442 246666666655543
No 92
>PRK12325 prolyl-tRNA synthetase; Provisional
Probab=97.48 E-value=0.0006 Score=71.99 Aligned_cols=115 Identities=17% Similarity=0.165 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHHHhhcCCeEEeeCceeeccC----CC---C-CcceeEe-ccCCCceeeccCh-----HHHHhhhcc-
Q 013865 247 IFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS----SE---G-GSAVFRL-DYKGQSACLAQSP-----QLHKQMSIC- 311 (435)
Q Consensus 247 i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~----~e---g-ga~~F~v-~~~~~~~~L~~Sp-----ql~lq~~i~- 311 (435)
=.+++..|.+.+|+-+...||.||.||.|.... ++ + +.+.|.+ +--+.+++|+... .++......
T Consensus 46 g~~i~~~i~~~i~~~~~~~G~~ev~~P~l~~~~l~~~sg~~~~~~~emf~~~d~~~~~~~L~Pt~e~~~~~~~~~~~~sy 125 (439)
T PRK12325 46 GLKVLKKIENIVREEQNRAGAIEILMPTIQPADLWRESGRYDAYGKEMLRIKDRHDREMLYGPTNEEMITDIFRSYVKSY 125 (439)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHhhcCCccccchhheEEecCCCCEEEEcCCCcHHHHHHHHHHhhhc
Confidence 367888999999999999999999999998542 11 1 3346776 3456788888532 333332221
Q ss_pred CCC-ceeEEEecceecCCCC--CCccccccccceeeeeccccHHHHHHHHHHHH
Q 013865 312 GDF-GRVFETGPVFRAEDSY--THRHLCEFTGLDVEMEIKKHYSEVMDIVDRLF 362 (435)
Q Consensus 312 ~g~-~rVfeIgp~FR~E~s~--t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li 362 (435)
..+ =|+|+||++||+|.+. +..=.-||+|-|.|....+ .+++.+...+++
T Consensus 126 rdLPlrl~q~~~~fR~E~~~~~GL~R~reF~~~D~h~f~~~-~~~a~~~~~~~~ 178 (439)
T PRK12325 126 KDLPLNLYHIQWKFRDEIRPRFGVMRGREFLMKDAYSFDLD-EEGARHSYNRMF 178 (439)
T ss_pred hhhchHheEecCEecCCCCCCCCccccceEeEeccEEEeCC-HHHHHHHHHHHH
Confidence 123 4899999999999641 1113579999999887664 455555444444
No 93
>PRK03991 threonyl-tRNA synthetase; Validated
Probab=97.47 E-value=0.00066 Score=74.42 Aligned_cols=121 Identities=17% Similarity=0.248 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEeeCceeecc---CC----CC-CcceeEeccCCCceeeccChH-----HHHhhhcc-
Q 013865 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAG---SS----EG-GSAVFRLDYKGQSACLAQSPQ-----LHKQMSIC- 311 (435)
Q Consensus 246 ~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~---~~----eg-ga~~F~v~~~~~~~~L~~Spq-----l~lq~~i~- 311 (435)
.-.+++..|.+++++.+.+.||.+|.||.|... .. ++ +.+.|.+.--+.+++|+-..+ +|+....+
T Consensus 225 ~G~~i~~~L~~~~~~~~~~~G~~~V~tP~~~~~~~~~~sgh~~~f~e~my~v~~~~e~l~Lrp~~c~~~~~~~~~~~~Sy 304 (613)
T PRK03991 225 KGRLIRDLLEDYVYNLVVELGAMPVETPIMYDLSHPAIREHADKFGERQYRVKSDKKDLMLRFAACFGQFLMLKDMTISY 304 (613)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEECCeecChhHHhhcccccccchhceEecCCCceEEEecCCCHHHHHHHhCCcCch
Confidence 567889999999999999999999999988422 11 11 345777765567888885544 22332211
Q ss_pred CCC-ceeEEEec-ceecCCCC---CCccccccccceeeeeccccHHHHHHHHHHHHHHHHh
Q 013865 312 GDF-GRVFETGP-VFRAEDSY---THRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFD 367 (435)
Q Consensus 312 ~g~-~rVfeIgp-~FR~E~s~---t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~ 367 (435)
..+ =|+|++|+ |||+|.+. +..=+-||||.|.+.-.. +.++.++.++.++..+..
T Consensus 305 rdLPlr~~e~~~~~fR~E~~g~l~GL~RvReF~~~D~h~f~~-~~eqa~~e~~~~l~~~~~ 364 (613)
T PRK03991 305 KNLPLKMYELSTYSFRLEQRGELVGLKRLRAFTMPDMHTLCK-DMEQAMEEFEKQYEMILE 364 (613)
T ss_pred hhCChhhheecchheeCCCCCCCcCcccccceEeeeEEEEEC-CHHHHHHHHHHHHHHHHH
Confidence 112 28999999 99999752 233456999999987654 367888887777766444
No 94
>TIGR00408 proS_fam_I prolyl-tRNA synthetase, family I. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent families. This family includes the archaeal enzyme, the Pro-specific domain of a human multifunctional tRNA ligase, and the enzyme from the spirochete Borrelia burgdorferi. The other family includes enzymes from Escherichia coli, Bacillus subtilis, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae.
Probab=97.47 E-value=0.0003 Score=74.92 Aligned_cols=115 Identities=22% Similarity=0.218 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHHHhhcCCeEEeeCceeeccC---CCC------CcceeEeccC-----CCceeeccChHHHH-----hh
Q 013865 248 FRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS---SEG------GSAVFRLDYK-----GQSACLAQSPQLHK-----QM 308 (435)
Q Consensus 248 ~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~---~eg------ga~~F~v~~~-----~~~~~L~~Spql~l-----q~ 308 (435)
.+++..|...+++-+.+.||.||.||.|.... .+| +.+.|.+.-. +.+++|+-..+-.. ..
T Consensus 38 ~~i~~~I~~~i~~~~~~~G~~ev~~P~l~~~~~~~~~~~h~~~f~~e~f~v~~~g~~~~~e~l~LrPt~e~~i~~~~~~~ 117 (472)
T TIGR00408 38 FKIWKNIQKILRNILDEIGHEEVYFPMLIPESELAKEKDHIKGFEPEVYWITHGGLSKLDEPLALRPTSETAMYPMFKKW 117 (472)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHhhcchhhhcchhcEEEecCCCCccCCcEEEeCCCcHHHHHHHhcc
Confidence 45588999999999999999999999997543 122 2346777543 47899986654332 22
Q ss_pred hcc-CCCc-eeEEEecceecCCCCC--CccccccccceeeeeccccHHHHHHHHHHHHH
Q 013865 309 SIC-GDFG-RVFETGPVFRAEDSYT--HRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFV 363 (435)
Q Consensus 309 ~i~-~g~~-rVfeIgp~FR~E~s~t--~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~ 363 (435)
... ..+. |+|++|+|||+|.+.+ .-=.-||+|.|.+..|.+ .+++...++.++.
T Consensus 118 i~S~rdLPlr~~q~~~vfR~E~~~~~gl~R~rEF~~~e~h~~~~~-~e~a~~e~~~~l~ 175 (472)
T TIGR00408 118 VKSYTDLPLKINQWVNVFRYETKHTRPFLRTREFTWQEAHTAHAT-AEEAEEQVLRALD 175 (472)
T ss_pred ccChhhcCHHHhheeeeecCCCCCCCCcceeeeeehhhhhhhhCC-HHHHHHHHHHHHH
Confidence 211 1232 8999999999998632 123569999999988875 6776666665554
No 95
>PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=97.26 E-value=0.0016 Score=67.38 Aligned_cols=109 Identities=18% Similarity=0.279 Sum_probs=72.7
Q ss_pred HHHHHHHHHhhcCCeEEeeCceeeccCC--C-CCc----ceeEe-ccCCCceeec--cChHHHHhhhc--cCCCceeEEE
Q 013865 253 QVGNIFRQFLLSENFVEIHTPKLIAGSS--E-GGS----AVFRL-DYKGQSACLA--QSPQLHKQMSI--CGDFGRVFET 320 (435)
Q Consensus 253 ~i~~~~r~fl~~~gF~EV~TP~l~~~~~--e-gga----~~F~v-~~~~~~~~L~--~Spql~lq~~i--~~g~~rVfeI 320 (435)
.|.+.+++.|..+||.||.||++-.... . .|. ..|.+ +--|+.+.|| ..+++-.-.+- ...--|.|.+
T Consensus 9 ~i~~~i~~~f~~~Gy~~I~tP~lE~~e~~~~~~g~~~~~~~~~f~D~~G~~l~LRpD~T~piaR~~~~~~~~~p~R~~Y~ 88 (373)
T PRK12295 9 AAAEALLASFEAAGAVRVDPPILQPAEPFLDLSGEDIRRRIFVTSDENGEELCLRPDFTIPVCRRHIATAGGEPARYAYL 88 (373)
T ss_pred HHHHHHHHHHHHcCCEEeeCCccccHHHhhhccCchhhcceEEEECCCCCEEeeCCCCcHHHHHHHHHcCCCCCeEEEEE
Confidence 6888899999999999999999965431 1 122 25654 3346777777 33333332110 1224599999
Q ss_pred ecceecCCCCCCccccccccceeeeecc-ccH---HHHHHHHHHHHHHH
Q 013865 321 GPVFRAEDSYTHRHLCEFTGLDVEMEIK-KHY---SEVMDIVDRLFVTI 365 (435)
Q Consensus 321 gp~FR~E~s~t~rHl~EFt~lE~e~a~~-~~~---~d~m~~~e~li~~i 365 (435)
|+|||.+.. ..-||+|+.+|+-.. +.. -|++.++-+.+..+
T Consensus 89 g~VfR~~~g----r~rEf~Q~GvEiiG~~~~~~aDaEvi~l~~~~L~~l 133 (373)
T PRK12295 89 GEVFRQRRD----RASEFLQAGIESFGRADPAAADAEVLALALEALAAL 133 (373)
T ss_pred ccEEECCCC----CCCcceEeeEEeeCCCCCccchHHHHHHHHHHHHHc
Confidence 999999832 347999999998764 222 37888887777553
No 96
>PLN02837 threonine-tRNA ligase
Probab=97.10 E-value=0.0021 Score=70.62 Aligned_cols=119 Identities=15% Similarity=0.132 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCC---CC-----CcceeEecc-CCCceeeccChH-----HHHhhhc
Q 013865 245 QGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS---EG-----GSAVFRLDY-KGQSACLAQSPQ-----LHKQMSI 310 (435)
Q Consensus 245 ~~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~---eg-----ga~~F~v~~-~~~~~~L~~Spq-----l~lq~~i 310 (435)
-.-.+++.+|.+++++....+||.+|.||.|..... -| +.+.|.+.- -+..+.|+.+.. +|++...
T Consensus 244 p~G~~l~~~L~~~~~~~~~~~G~~~v~tP~l~~~~l~~~sGh~~~~~~~mf~~~~~~~~~y~l~p~~~p~~~~~~~~~~~ 323 (614)
T PLN02837 244 PKGAIVRHIIEDSWKKMHFEHGYDLLYTPHVAKADLWKTSGHLDFYKENMYDQMDIEDELYQLRPMNCPYHILVYKRKLH 323 (614)
T ss_pred chHHHHHHHHHHHHHHHHHHCCCEEEECCccCCHHHHhhcCCcccchhhcccccCCCCceEEECCCCcHHHHHHHhCccC
Confidence 356788999999999999999999999999975431 11 223555422 234455664432 3333221
Q ss_pred c-CCC-ceeEEEecceecCCCCC---CccccccccceeeeeccccHHHHHHHHHHHHHHH
Q 013865 311 C-GDF-GRVFETGPVFRAEDSYT---HRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTI 365 (435)
Q Consensus 311 ~-~g~-~rVfeIgp~FR~E~s~t---~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i 365 (435)
. .++ =|+|++|+|||+|.+.. ..=.-||+|.|.+. |+. .+++.+.++.++..+
T Consensus 324 SyrdLPlr~~~~~~~~R~E~~g~~~GL~RvreF~~~e~h~-f~~-~~q~~~e~~~~l~~~ 381 (614)
T PLN02837 324 SYRDLPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHI-FCL-EDQIKDEIRGVLDLT 381 (614)
T ss_pred ChhHCCHhhEeecccccCCCCCCCcCcccccceEECeEEE-EeC-HHHHHHHHHHHHHHH
Confidence 1 122 38999999999998521 22345899999996 875 677777666666543
No 97
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.10 E-value=0.0031 Score=66.25 Aligned_cols=117 Identities=21% Similarity=0.277 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCCC---CCc-------ceeEecc-CCCceeec---cCh--HHHHhhhc
Q 013865 247 IFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSE---GGS-------AVFRLDY-KGQSACLA---QSP--QLHKQMSI 310 (435)
Q Consensus 247 i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~e---gga-------~~F~v~~-~~~~~~L~---~Sp--ql~lq~~i 310 (435)
=...+..|...+|+-+...||.||.||++-....= .|. +.|.... -|+.+-|| ++| -++.+-..
T Consensus 17 d~~~~~~i~~~~~~v~~~yGf~eI~TPifE~telf~r~~Ge~td~v~kemY~F~Dkggr~laLRpe~Tapv~R~~~en~~ 96 (429)
T COG0124 17 DMALREYIESTIRKVFESYGFSEIRTPIFEYTELFARKSGEETDVVEKEMYTFKDKGGRSLALRPELTAPVARAVAENKL 96 (429)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEeccCccccchhHhhhccCCcccccccceEEEEeCCCCEEEecccCcHHHHHHHHhccc
Confidence 45677889999999999999999999987543211 121 1333322 46777777 444 23332211
Q ss_pred c-CCCceeEEEecceecCCCCCCccccccccceeeeeccccH---HHHHHHHHHHHHH
Q 013865 311 C-GDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHY---SEVMDIVDRLFVT 364 (435)
Q Consensus 311 ~-~g~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~---~d~m~~~e~li~~ 364 (435)
. .---|.|.+|||||.|.....|- -||+||++|....++. -|++.++.+++..
T Consensus 97 ~~~~p~k~yy~g~vfRyErPQ~GR~-RqF~Q~g~E~iG~~~~~~DAEvi~l~~~~l~~ 153 (429)
T COG0124 97 DLPKPLKLYYFGPVFRYERPQKGRY-RQFYQFGVEVIGSDSPDADAEVIALAVEILEA 153 (429)
T ss_pred cccCCeeEEEecceecCCCCCCCCc-eeeEEcCeEEeCCCCcccCHHHHHHHHHHHHH
Confidence 1 12349999999999999877765 6999999998765421 3677777777764
No 98
>PLN02678 seryl-tRNA synthetase
Probab=97.02 E-value=0.0016 Score=68.85 Aligned_cols=116 Identities=14% Similarity=0.196 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCC-CC-------CcceeEeccCCCceeeccC---h--HHHHhhhc-c
Q 013865 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS-EG-------GSAVFRLDYKGQSACLAQS---P--QLHKQMSI-C 311 (435)
Q Consensus 246 ~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~-eg-------ga~~F~v~~~~~~~~L~~S---p--ql~lq~~i-~ 311 (435)
.-.+++.+|++++++++..+||.||.||.|..... ++ ....|.+.--|.+.||.-. | -+|....+ -
T Consensus 172 ~ga~L~~AL~~y~ld~~~~~Gy~~V~~P~lv~~~~~~~sG~~~~f~e~my~i~~~~~~~yLi~TaE~~l~~~h~~~~~s~ 251 (448)
T PLN02678 172 AGVLLNQALINFGLAFLRKRGYTPLQTPFFMRKDVMAKCAQLAQFDEELYKVTGEGDDKYLIATSEQPLCAYHRGDWIDP 251 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEECcccccHHHHhhcCCcccchhcCceecCCCCceeeecccccccChHHhcccCCH
Confidence 34788899999999999999999999999975431 11 1234555322235555432 1 12222111 1
Q ss_pred CCC-ceeEEEecceecCCCC---C---CccccccccceeeeeccccHHH--HHHHHHHHHH
Q 013865 312 GDF-GRVFETGPVFRAEDSY---T---HRHLCEFTGLDVEMEIKKHYSE--VMDIVDRLFV 363 (435)
Q Consensus 312 ~g~-~rVfeIgp~FR~E~s~---t---~rHl~EFt~lE~e~a~~~~~~d--~m~~~e~li~ 363 (435)
..+ =|++++|+|||+|-+. + ..-.-+|+++|.. .|.. -++ .....|+|+.
T Consensus 252 ~eLPlr~~~~s~cfR~Eags~G~~~~GL~RvhqF~KvE~f-~~~~-pe~~~s~~~~e~~l~ 310 (448)
T PLN02678 252 KELPIRYAGYSTCFRKEAGSHGRDTLGIFRVHQFEKVEQF-CITS-PNGNESWEMHEEMLK 310 (448)
T ss_pred HhCCceeEEeccccccccccCCCcCCcceEEEEEEEEEEE-EEEC-CCchhHHHHHHHHHH
Confidence 122 3899999999999752 1 1223489999994 4432 233 4455555544
No 99
>cd04489 ExoVII_LU_OBF ExoVII_LU_OBF: A subfamily of OB folds corresponding to the N-terminal OB-fold domain of Escherichia coli exodeoxyribonuclease VII (ExoVII) large subunit. E. coli ExoVII is composed of two non-identical subunits. E. coli ExoVII is a single-strand-specific exonuclease which degrades ssDNA from both 3-prime and 5-prime ends. ExoVII plays a role in methyl-directed mismatch repair in vivo. ExoVII may also guard the genome from mutagenesis by removing excess ssDNA, since the build up of ssDNA would lead to SOS induction and PolIV-dependent mutagenesis.
Probab=97.02 E-value=0.0088 Score=47.16 Aligned_cols=74 Identities=14% Similarity=0.214 Sum_probs=55.8
Q ss_pred EEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCcccCCCceeEEEE
Q 013865 107 VLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQ 186 (435)
Q Consensus 107 V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~~~~~~t~~lEi~ 186 (435)
++|.|-|.++|...++++|+.|.|.++.+.+++..+.. .++...|..|+.|.|.|.+...+. .+++.|.
T Consensus 2 ~~v~g~v~~i~~tk~g~~~~~L~D~~~~i~~~~f~~~~------~~~~~~l~~g~~v~v~g~v~~~~~-----~~~~~l~ 70 (78)
T cd04489 2 VWVEGEISNLKRPSSGHLYFTLKDEDASIRCVMWRSNA------RRLGFPLEEGMEVLVRGKVSFYEP-----RGGYQLI 70 (78)
T ss_pred EEEEEEEecCEECCCcEEEEEEEeCCeEEEEEEEcchh------hhCCCCCCCCCEEEEEEEEEEECC-----CCEEEEE
Confidence 68999999998633359999999999999999986421 123356899999999999974220 1457888
Q ss_pred EeEEE
Q 013865 187 IKKLY 191 (435)
Q Consensus 187 v~~i~ 191 (435)
+++|.
T Consensus 71 v~~i~ 75 (78)
T cd04489 71 VEEIE 75 (78)
T ss_pred EEEEE
Confidence 87764
No 100
>KOG2784 consensus Phenylalanyl-tRNA synthetase, beta subunit [Translation, ribosomal structure and biogenesis]
Probab=96.97 E-value=0.0011 Score=67.10 Aligned_cols=59 Identities=24% Similarity=0.385 Sum_probs=45.3
Q ss_pred HHHHhhhccCCC--ceeEEEecceecCCCCCCccccccccceeeeeccc-cHHHHHHHHHHHHHH
Q 013865 303 QLHKQMSICGDF--GRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKK-HYSEVMDIVDRLFVT 364 (435)
Q Consensus 303 ql~lq~~i~~g~--~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~-~~~d~m~~~e~li~~ 364 (435)
.||.- .-.|| .|.|.|-+|||||-. +.+||+||.++|--++-.+ .+-|+|.++++++..
T Consensus 322 mLy~L--Ak~~f~p~K~FSIDrVFRNEtv-DaTHLAEFHQVEGviad~gltLgdLig~l~~ff~~ 383 (483)
T KOG2784|consen 322 MLYRL--AKKGFKPAKYFSIDRVFRNETV-DATHLAEFHQVEGVIADKGLTLGDLIGILMEFFTK 383 (483)
T ss_pred HHHHH--HhCCCCcccccchhhhhhcccc-chHHHHHHhhhceeeecCCCcHHHHHHHHHHHHhc
Confidence 55542 24556 599999999999996 8999999999998776532 367888888777654
No 101
>PF13742 tRNA_anti_2: OB-fold nucleic acid binding domain
Probab=96.71 E-value=0.016 Score=48.60 Aligned_cols=76 Identities=13% Similarity=0.249 Sum_probs=59.7
Q ss_pred CCEEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHH--hcCCCCcEEEEEEEEecCCcccCCCce
Q 013865 104 DQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFV--RSLSNESIVDVIGVVSVPDVEIKGATQ 181 (435)
Q Consensus 104 g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~--~~l~~esiV~V~G~v~~~~~~~~~~t~ 181 (435)
-..|||.|=|.+.+..+++-+|++|+|+..+|+|++-.+.. ..+ ..+..|+-|.|.|.+..-. ..|
T Consensus 21 ~~~vwV~GEIs~~~~~~~gh~YftLkD~~a~i~~~~~~~~~-------~~i~~~~l~~G~~V~v~g~~~~y~-----~~G 88 (99)
T PF13742_consen 21 LPNVWVEGEISNLKRHSSGHVYFTLKDEEASISCVIFRSRA-------RRIRGFDLKDGDKVLVRGRVSFYE-----PRG 88 (99)
T ss_pred cCCEEEEEEEeecEECCCceEEEEEEcCCcEEEEEEEHHHH-------hhCCCCCCCCCCEEEEEEEEEEEC-----CCc
Confidence 47899999999999844467999999999999999986421 222 3689999999999987532 136
Q ss_pred eEEEEEeEEE
Q 013865 182 QVEVQIKKLY 191 (435)
Q Consensus 182 ~lEi~v~~i~ 191 (435)
.++|.+.+|.
T Consensus 89 ~~sl~v~~i~ 98 (99)
T PF13742_consen 89 SLSLIVEDID 98 (99)
T ss_pred EEEEEEEEeE
Confidence 7999988774
No 102
>PRK04173 glycyl-tRNA synthetase; Provisional
Probab=96.63 E-value=0.0071 Score=64.23 Aligned_cols=30 Identities=13% Similarity=0.424 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHhhc--CCeEEeeCceeec
Q 013865 248 FRIQSQVGNIFRQFLLS--ENFVEIHTPKLIA 277 (435)
Q Consensus 248 ~~~rs~i~~~~r~fl~~--~gF~EV~TP~l~~ 277 (435)
.++|..|.+++|+.+.. .||.||.||+|..
T Consensus 38 ~~l~~~i~~~~r~~~~~~~~~~~ev~tp~i~~ 69 (456)
T PRK04173 38 VELKNNIKRAWWKSFVQEREDVVGIDSPIIMP 69 (456)
T ss_pred HHHHHHHHHHHHHHHHhccCCEEEEeccccCC
Confidence 46788999999999987 7999999999875
No 103
>cd04487 RecJ_OBF2_like RecJ_OBF2_like: A subfamily of OB folds corresponding to the second OB fold (OBF2) of archaeal-specific proteins with similarity to eubacterial RecJ. RecJ is an ssDNA-specific exonuclease. Although the overall sequence similarity of these proteins to eubacterial RecJ proteins is marginal, they appear to carry motifs, which have been shown to be essential for nuclease function in Escherichia coli RecJ. In addition to this OB fold, most proteins in this subfamily contain: i) an N-terminal OB fold belonging to a different domain family (the ribosomal S1-like RNA-binding family); and ii) a domain, C-terminal to OBF2, characteristic of DHH family proteins. DHH family proteins include E. coli RecJ, and are predicted to have a phosphoesterase function.
Probab=96.55 E-value=0.021 Score=45.27 Aligned_cols=73 Identities=23% Similarity=0.309 Sum_probs=55.2
Q ss_pred EEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCcccCCCceeEEEE
Q 013865 107 VLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQ 186 (435)
Q Consensus 107 V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~~~~~~t~~lEi~ 186 (435)
|+|.|=|.+.+..|.. +|+.|+|+...|.|++-.... ......+..|+.|.|.|.+.. ..|.+.|.
T Consensus 1 v~v~GeVs~~~~~~GH-vyfsLkD~~a~i~cv~f~~~~------~~~~~~l~~Gd~V~v~G~v~~-------~~G~~ql~ 66 (73)
T cd04487 1 VHIEGEVVQIKQTSGP-TIFTLRDETGTVWAAAFEEAG------VRAYPEVEVGDIVRVTGEVEP-------RDGQLQIE 66 (73)
T ss_pred CEEEEEEeccccCCCC-EEEEEEcCCEEEEEEEEchhc------cCCcCCCCCCCEEEEEEEEec-------CCeEEEEE
Confidence 5789999876445435 889999999999999875421 111246899999999999864 13679999
Q ss_pred EeEEEEe
Q 013865 187 IKKLYCV 193 (435)
Q Consensus 187 v~~i~vl 193 (435)
+.++.+|
T Consensus 67 v~~i~~~ 73 (73)
T cd04487 67 VESLEVL 73 (73)
T ss_pred EeeEEEC
Confidence 9999875
No 104
>COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.51 E-value=0.007 Score=64.66 Aligned_cols=116 Identities=18% Similarity=0.221 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHHHHhhcCCeEEeeCceeeccC-------CCC-CcceeEecc-CCCceeeccChHHHHhhhc----c--
Q 013865 247 IFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS-------SEG-GSAVFRLDY-KGQSACLAQSPQLHKQMSI----C-- 311 (435)
Q Consensus 247 i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~-------~eg-ga~~F~v~~-~~~~~~L~~Spql~lq~~i----~-- 311 (435)
-++++..|.+.+|+-|++.|..||.-|+|+++. .+| |.++|.+.- -++++.|+-..|=-.--++ -
T Consensus 46 g~rv~~kI~~iir~em~~~G~~Evl~P~L~p~eLwkEs~r~~~f~~El~~v~drg~~~l~L~PTsEe~it~~~~~~i~SY 125 (500)
T COG0442 46 GLRVLEKIENIIREEMDKIGAQEVLFPTLIPAELWKESGRWEGFGPELFRVKDRGDRPLALRPTSEEVITDMFRKWIRSY 125 (500)
T ss_pred HHHHHHHHHHHHHHHHHhcCceEEechhcCHHHHHHHhChhhhcchhhEEEEccCCceeeeCCCcHHHHHHHHHHHhhhh
Confidence 577888999999999999999999999999843 123 556888754 5789999966653221111 1
Q ss_pred CCC-ceeEEEecceecCCC--CCCccccccccceeeeeccccHHHHHHHHHHHHH
Q 013865 312 GDF-GRVFETGPVFRAEDS--YTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFV 363 (435)
Q Consensus 312 ~g~-~rVfeIgp~FR~E~s--~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~ 363 (435)
.+| =++|+|..+||.|-- ...--.-||+|=|.|-.+.+ .+++....+.++.
T Consensus 126 kdLPl~lYQi~~kfRdE~rpr~gllR~REF~mkdaySfh~~-~e~a~~~y~~~~~ 179 (500)
T COG0442 126 KDLPLKLYQIQSKFRDEKRPRFGLLRGREFLMKDAYSFHAD-EEDAEETYEKMLD 179 (500)
T ss_pred hhCCcceeeeeeEEeccccCCCCccchheeeecccccccCC-HHHHHHHHHHHHH
Confidence 122 279999999999962 12234679999999999986 8888888877764
No 105
>PRK12294 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=96.45 E-value=0.027 Score=55.86 Aligned_cols=95 Identities=12% Similarity=0.055 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCC--CCCcc----eeE-e-ccCCCceeec--cChHHHHhhhc-cCC
Q 013865 245 QGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS--EGGSA----VFR-L-DYKGQSACLA--QSPQLHKQMSI-CGD 313 (435)
Q Consensus 245 ~~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~--egga~----~F~-v-~~~~~~~~L~--~Spql~lq~~i-~~g 313 (435)
+.-+..+..|.+.+++.|...||-+|.||++-.... .++.. .|. + +--|+.+-|| ..|++-.-.+. ..+
T Consensus 4 ~~~~~~~~~ie~~l~~~f~~~GY~~I~tP~~E~~d~~~~~~~~~~~~~~~~~~~~~Gr~laLRpD~T~~iAR~~a~~~~~ 83 (272)
T PRK12294 4 SEQLIALKESETAFLKYFNKADYELVDFSVIEKLDWKQLNHEDLQQMGERSFWQHEHQIYALRNDFTDQLLRYYSMYPTA 83 (272)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCeEeeCCcchhHHhhhccccchhhhheeeeecCCCCEEEEcCCCCHHHHHHHHhcCCC
Confidence 344556677889999999999999999999953322 12211 222 2 2246777787 55566552111 124
Q ss_pred CceeEEEecceecCCCCCCccccccccceeeeec
Q 013865 314 FGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEI 347 (435)
Q Consensus 314 ~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~ 347 (435)
..|.|.+|+|||.+. +|+|+.+|.-.
T Consensus 84 ~~Rl~Y~g~VfR~~~--------~~~Q~GvEliG 109 (272)
T PRK12294 84 ATKVAYAGLIIRNNE--------AAVQVGIENYA 109 (272)
T ss_pred CceEEEeccEeccCC--------CcceeceEEEC
Confidence 569999999999875 38999999876
No 106
>PLN02320 seryl-tRNA synthetase
Probab=96.43 E-value=0.0081 Score=64.17 Aligned_cols=117 Identities=18% Similarity=0.302 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCC-CC-Cc-------ceeEeccCCCceeeccChH-----HHHhhhcc-
Q 013865 247 IFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS-EG-GS-------AVFRLDYKGQSACLAQSPQ-----LHKQMSIC- 311 (435)
Q Consensus 247 i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~-eg-ga-------~~F~v~~~~~~~~L~~Spq-----l~lq~~i~- 311 (435)
..++..++++++++++..+||.||.||.|..... +| |- .+|.++ +.++||.-..| +|....+.
T Consensus 232 ~a~Le~ALi~f~ld~~~~~Gy~eV~tP~lv~~~l~~~sG~~p~~e~~~~y~ie--~ed~~Li~TaE~Pl~~~~~~~ils~ 309 (502)
T PLN02320 232 AVLLEMALVNWTLSEVMKKGFTPLTTPEIVRSSVVEKCGFQPRGDNTQVYSID--GSDQCLIGTAEIPVGGIHMDSILLE 309 (502)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCccchHHHHHhcCCCcccccCceeEEC--CCceEEeecccccccccccccccCH
Confidence 4446678999999999999999999999985442 22 21 123332 46677742222 33332221
Q ss_pred CCC-ceeEEEecceecCCCCCC------ccccccccceeeeeccccHHHHHHHHHHHHHHHHh
Q 013865 312 GDF-GRVFETGPVFRAEDSYTH------RHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFD 367 (435)
Q Consensus 312 ~g~-~rVfeIgp~FR~E~s~t~------rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~ 367 (435)
..+ =|++++|+|||.|-+... --.-+|+..|... |+. -++..+..++|+..+..
T Consensus 310 ~dLPlRy~~~s~cFR~EAgs~G~d~rGL~RvhQF~KvE~~i-f~~-peqs~~e~e~ll~~~e~ 370 (502)
T PLN02320 310 SALPLKYVAFSHCFRTEAGAAGAATRGLYRVHQFSKVEMFV-ICR-PEESESFHEELIQIEED 370 (502)
T ss_pred hhCCceeEEeccccccccccCCCcCCCceeeeeeecccEEE-EEC-HHHHHHHHHHHHHHHHH
Confidence 122 389999999999965111 1233799999854 443 57777777777765443
No 107
>TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase. This family of archaeal proteins resembles known phenylalanyl-tRNA synthetase alpha chains. Recently, it was shown to act in a proposed pathway of tRNA(Cys) indirect aminoacylation, resulting in Cys biosynthesis from O-phosphoserine, in certain archaea. It charges tRNA(Cys) with O-phosphoserine. The pscS gene product converts the phosphoserine to Cys.
Probab=96.39 E-value=0.0053 Score=64.58 Aligned_cols=52 Identities=13% Similarity=0.220 Sum_probs=44.3
Q ss_pred CceeEEEecceecCCCCCCccccccccceeeeeccc-cHHHHHHHHHHHHHHH
Q 013865 314 FGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKK-HYSEVMDIVDRLFVTI 365 (435)
Q Consensus 314 ~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~-~~~d~m~~~e~li~~i 365 (435)
=-|+|+||+|||+|...+.+|+++|.++|.-++..+ ++.|++.+++.|++.+
T Consensus 207 PiRIFsIGRVfRrD~~~DaTHl~eFhQlEGLVVdedVSf~DLKgvLe~LLr~L 259 (533)
T TIGR00470 207 PLKLFSIDRCFRREQREDRSHLMTYHSASCVVVDEEVSVDDGKAVAEGLLAQF 259 (533)
T ss_pred CeEEEeeeeEEecCCCCCCccCceeeeEEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 359999999999996457799999999998766532 4899999999999988
No 108
>cd04485 DnaE_OBF DnaE_OBF: A subfamily of OB folds corresponding to the C-terminal OB-fold nucleic acid binding domain of Thermus aquaticus and Escherichia coli type C replicative DNA polymerase III alpha subunit (DnaE). The DNA polymerase holoenzyme of E. coli contains two copies of this replicative polymerase, each of which copies a different DNA strand. This group also contains Bacillus subtilis DnaE. Replication in B. subtilis and Staphylococcus aureus requires two different type C polymerases, polC and DnaE, both of which are thought to be included in the DNA polymerase holoenzyme. At the B. subtilis replication fork, polC appears to be involved in leading strand synthesis and DnaE in lagging strand synthesis.
Probab=96.28 E-value=0.044 Score=42.80 Aligned_cols=72 Identities=17% Similarity=0.333 Sum_probs=50.8
Q ss_pred EEEEEeeee----cCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCcccCCCceeEE
Q 013865 109 IRGRVHTTR----PVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVE 184 (435)
Q Consensus 109 v~GrV~~~R----~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~~~~~~t~~lE 184 (435)
|.|.|.+++ ..|+.++|+.|.|+++.+.+++... ...++...+..|..|.|.|.+..-. +.++
T Consensus 2 i~g~v~~~~~~~~k~g~~~~~~~l~D~tg~~~~~~f~~------~~~~~~~~l~~g~~v~v~G~v~~~~-------~~~~ 68 (84)
T cd04485 2 VAGLVTSVRRRRTKKGKRMAFVTLEDLTGSIEVVVFPE------TYEKYRDLLKEDALLLVEGKVERRD-------GGLR 68 (84)
T ss_pred EEEEEEEeEEEEcCCCCEEEEEEEEeCCCeEEEEECHH------HHHHHHHHhcCCCEEEEEEEEEecC-------CceE
Confidence 455555432 3465789999999999999999732 1223456789999999999996421 3477
Q ss_pred EEEeEEEEe
Q 013865 185 VQIKKLYCV 193 (435)
Q Consensus 185 i~v~~i~vl 193 (435)
|.+.++..+
T Consensus 69 l~~~~i~~~ 77 (84)
T cd04485 69 LIAERIEDL 77 (84)
T ss_pred EEeeccccH
Confidence 887776544
No 109
>PRK07373 DNA polymerase III subunit alpha; Reviewed
Probab=96.17 E-value=0.034 Score=58.90 Aligned_cols=85 Identities=15% Similarity=0.198 Sum_probs=63.5
Q ss_pred eccccCCCCCCEEEEEEEEeeeec----CCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEe
Q 013865 95 VGALNGSLKDQEVLIRGRVHTTRP----VGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVS 170 (435)
Q Consensus 95 i~~l~~~~~g~~V~v~GrV~~~R~----~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~ 170 (435)
+.++.....|+.|+|.|.|.++|. .|+.|+|+.|.|.++.+.+++..+ ...++...|..+.+|.|+|.+.
T Consensus 271 ~~~l~~~~~~~~v~vaG~I~~ik~~~TKkG~~maf~~leD~tG~ie~vvFp~------~y~~~~~~l~~~~~v~v~G~v~ 344 (449)
T PRK07373 271 LSELEEQKEKTKVSAVVMLNEVKKIVTKKGDPMAFLQLEDLSGQSEAVVFPK------SYERISELLQVDARLIIWGKVD 344 (449)
T ss_pred HHHHhcccCCCEEEEEEEEEEeEecccCCCCEEEEEEEEECCCCEEEEECHH------HHHHHHHHhccCCEEEEEEEEE
Confidence 444433345889999999999874 366799999999999999999843 2334556799999999999996
Q ss_pred cCCcccCCCceeEEEEEeEEEE
Q 013865 171 VPDVEIKGATQQVEVQIKKLYC 192 (435)
Q Consensus 171 ~~~~~~~~~t~~lEi~v~~i~v 192 (435)
..+ +.+.|.+.+|.-
T Consensus 345 ~~~-------~~~~liv~~i~~ 359 (449)
T PRK07373 345 RRD-------DQVQLIVEDAEP 359 (449)
T ss_pred ecC-------CeEEEEEeEeec
Confidence 421 246677776643
No 110
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=96.10 E-value=0.0068 Score=64.74 Aligned_cols=88 Identities=19% Similarity=0.322 Sum_probs=66.2
Q ss_pred eEEeccccCCCCCCEEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEec
Q 013865 92 WTVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSV 171 (435)
Q Consensus 92 ~~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~ 171 (435)
++.+.+|+. +.|++|.|+|-|..++..+.- .-+.|+|+++.+++-+..... + .-...+..|++|.|+|.|..
T Consensus 202 r~~i~~id~-~ig~tV~I~GeV~qikqT~GP-TVFtltDetg~i~aAAFe~aG-v-----RAyP~IevGdiV~ViG~V~~ 273 (715)
T COG1107 202 RTLIDDLDE-MIGKTVRIEGEVTQIKQTSGP-TVFTLTDETGAIWAAAFEEAG-V-----RAYPEIEVGDIVEVIGEVTR 273 (715)
T ss_pred cccHHHHHh-hcCceEEEEEEEEEEEEcCCC-EEEEEecCCCceehhhhccCC-c-----ccCCCCCCCceEEEEEEEee
Confidence 345666766 899999999999999998734 556999999999998875422 1 22357999999999999975
Q ss_pred CCcccCCCceeEEEEEeEEEEee
Q 013865 172 PDVEIKGATQQVEVQIKKLYCVS 194 (435)
Q Consensus 172 ~~~~~~~~t~~lEi~v~~i~vls 194 (435)
.. |.+-|.+..++.|.
T Consensus 274 r~-------g~lQiE~~~me~L~ 289 (715)
T COG1107 274 RD-------GRLQIEIEAMEKLT 289 (715)
T ss_pred cC-------CcEEEeehhhHHhh
Confidence 32 45666666666654
No 111
>cd03524 RPA2_OBF_family RPA2_OBF_family: A family of oligonucleotide binding (OB) folds with similarity to the OB fold of the single strand (ss) DNA-binding domain (DBD)-D of human RPA2 (also called RPA32). RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). RPA contains six OB folds, which are involved in ssDNA binding and in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. This family also includes OB folds similar to those found in Escherichia coli SSB, the wedge domain of E. coli RecG (a branched-DNA-specific helicase), E. coli ssDNA specific exodeoxyribonuclease VII large subunit, Pyroco
Probab=96.00 E-value=0.12 Score=38.82 Aligned_cols=69 Identities=13% Similarity=0.174 Sum_probs=51.0
Q ss_pred EEEEEeeeecCC--CceEEEEEEeCC-eEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCcccCCCceeEEE
Q 013865 109 IRGRVHTTRPVG--NKLAFVVVRERV-STVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEV 185 (435)
Q Consensus 109 v~GrV~~~R~~G--~kl~Fl~Lrd~~-~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~~~~~~t~~lEi 185 (435)
|.|.|.+++... +.++++.|.|++ +.+.+++..+ ....+...+..|++|.|.|.+.... +...+
T Consensus 2 v~g~v~~~~~~~~~~~~~~~~l~D~~~~~i~~~~~~~------~~~~~~~~~~~g~~v~v~g~v~~~~-------~~~~l 68 (75)
T cd03524 2 IVGIVVAVEEIRTEGKVLIFTLTDGTGGTIRVTLFGE------LAEELENLLKEGQVVYIKGKVKKFR-------GRLQL 68 (75)
T ss_pred eEEEEEeecccccCCeEEEEEEEcCCCCEEEEEEEch------HHHHHHhhccCCCEEEEEEEEEecC-------CeEEE
Confidence 678888887654 578999999999 9999999853 1223446799999999999996421 34666
Q ss_pred EEeEE
Q 013865 186 QIKKL 190 (435)
Q Consensus 186 ~v~~i 190 (435)
.+.++
T Consensus 69 ~~~~~ 73 (75)
T cd03524 69 IVESI 73 (75)
T ss_pred Eeeee
Confidence 66543
No 112
>TIGR00415 serS_MJ seryl-tRNA synthetase, Methanococcus jannaschii family. The seryl-tRNA synthetases from a few of the Archaea, represented by this model, are very different from the set of mutually more closely related seryl-tRNA synthetases from Eubacteria, Eukaryotes, and other Archaea. Although distantly homologous, the present set differs enough not to be recognized by the pfam model tRNA-synt_2b that recognizes the remainder of seryl-tRNA synthetases among oither class II amino-acyl tRNA synthetases.
Probab=95.88 E-value=0.047 Score=58.32 Aligned_cols=117 Identities=16% Similarity=0.081 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHHHHHh-hcCCeEEeeCceeeccCC---CCC----c-ceeEecc-------C-----------------
Q 013865 246 GIFRIQSQVGNIFRQFL-LSENFVEIHTPKLIAGSS---EGG----S-AVFRLDY-------K----------------- 292 (435)
Q Consensus 246 ~i~~~rs~i~~~~r~fl-~~~gF~EV~TP~l~~~~~---egg----a-~~F~v~~-------~----------------- 292 (435)
..+++..++.+.+.+++ .+.||.||.+|.|++... +|- . +.|.|.. |
T Consensus 221 ~ga~L~rAL~~~~ld~~~~k~Gy~ev~fP~LIp~e~l~k~ghl~gF~~e~y~Vt~~~~d~d~~~~f~~~~~~~~eipi~~ 300 (520)
T TIGR00415 221 KITALFRALEEFFIEEIVKKIGFQECLFPKLIPLDIMNKMRYLEGLPEGMYYCCAPKRDPELFEEFKNELIIKKEIPIDK 300 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCeEEeCCcEecHHHHcccCCCCCCchhheEEecCCCCcchhhcccccccccccccccc
Confidence 45667788899997655 456999999999986542 111 1 1344421 0
Q ss_pred -----C-CceeeccChHHHHhhhcc------CCC-ceeEEEe-cceecCCC--CCCccccccccceeeeeccccHHHHHH
Q 013865 293 -----G-QSACLAQSPQLHKQMSIC------GDF-GRVFETG-PVFRAEDS--YTHRHLCEFTGLDVEMEIKKHYSEVMD 356 (435)
Q Consensus 293 -----~-~~~~L~~Spql~lq~~i~------~g~-~rVfeIg-p~FR~E~s--~t~rHl~EFt~lE~e~a~~~~~~d~m~ 356 (435)
. .+++|+-+.+..+=.+.. .++ -|+|++. +|||.|.. .+..=+-||+|.|.-. +.+ .++..+
T Consensus 301 L~~~le~~~~vL~PTSE~ply~~~a~~Ils~~dLPlk~~~~s~~CFR~EaGstrGL~RvhEF~kvE~v~-~~t-pEea~e 378 (520)
T TIGR00415 301 LKNGIKDPGYVIAPAQCEPFYQFFEGEVIDAEDKPIKFFDRSGWTYRWEAGGAKGLDRVHEFLRVECVW-IAE-PEETEE 378 (520)
T ss_pred ccccccCCceEEeCccHHHHHHHHhccccChhhCCeeEEEEecCeEeCCCCCCCCCceeeEEEEEEEEE-EeC-HHHHHH
Confidence 1 156687776655432222 233 3788845 79999983 3344456999999977 665 788888
Q ss_pred HHHHHHHH
Q 013865 357 IVDRLFVT 364 (435)
Q Consensus 357 ~~e~li~~ 364 (435)
..++++..
T Consensus 379 ~~e~mle~ 386 (520)
T TIGR00415 379 IRDKTLEL 386 (520)
T ss_pred HHHHHHHH
Confidence 88888754
No 113
>PRK00960 seryl-tRNA synthetase; Provisional
Probab=95.85 E-value=0.02 Score=61.54 Aligned_cols=117 Identities=15% Similarity=0.162 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHHHHH-hhcCCeEEeeCceeeccCC---CCCc-----ceeEeccCC--Cc------eeecc--------
Q 013865 246 GIFRIQSQVGNIFRQF-LLSENFVEIHTPKLIAGSS---EGGS-----AVFRLDYKG--QS------ACLAQ-------- 300 (435)
Q Consensus 246 ~i~~~rs~i~~~~r~f-l~~~gF~EV~TP~l~~~~~---egga-----~~F~v~~~~--~~------~~L~~-------- 300 (435)
.-.++..++.+++++. +...||.||.||.|..... .|-- +.|.|.-++ .+ .||..
T Consensus 221 ~Ga~L~~aL~~~i~d~~~~k~Gyeev~~P~Li~~ell~ksGhl~~F~e~my~V~~~~~d~e~~~~~~~~l~~T~Evpl~~ 300 (517)
T PRK00960 221 PMTKLFRAFEKLVIEEVLKPLGFDECLFPKLIPLEVMYKMRYLEGLPEGMYYVCPPKRDPEYFEEFVDEMMVKKEVPIEK 300 (517)
T ss_pred hHHHHHHHHHHHHHHhhHhhcCCeEEECCcccCHHHHhhcCCccCChhhceEeeccccccccccchhhhccccccccccc
Confidence 4567778899999887 4566999999999986431 1211 245553211 00 23221
Q ss_pred ----------------ChH---HHHhhhcc-CCCc-eeEE-EecceecCC--CCCCccccccccceeeeeccccHHHHHH
Q 013865 301 ----------------SPQ---LHKQMSIC-GDFG-RVFE-TGPVFRAED--SYTHRHLCEFTGLDVEMEIKKHYSEVMD 356 (435)
Q Consensus 301 ----------------Spq---l~lq~~i~-~g~~-rVfe-Igp~FR~E~--s~t~rHl~EFt~lE~e~a~~~~~~d~m~ 356 (435)
-|- +|....+. .++. |+|+ .|+|||+|. .++..=+-||+|.|.- .|+. .+++.+
T Consensus 301 ~~~~L~~~~yvLrPa~Cp~~y~~~~~~ils~rdLPLrl~e~sG~cFR~EsGs~~GL~RV~eF~kvE~h-~f~t-pEqs~e 378 (517)
T PRK00960 301 LKEKLRDPGYVLAPAQCEPFYQFFQGETVDVDELPIKFFDRSGWTYRWEGGGAHGLERVNEFHRIEIV-WLGT-PEQVEE 378 (517)
T ss_pred cccccccccccccccCcHHHHHHHhCCcCChhhCCHHHhhccCCceeCCCCCCCCCcccceeEEEEEE-EEeC-HHHHHH
Confidence 122 22222221 1221 7899 669999996 2333345699999997 6765 788888
Q ss_pred HHHHHHHH
Q 013865 357 IVDRLFVT 364 (435)
Q Consensus 357 ~~e~li~~ 364 (435)
..++++.+
T Consensus 379 e~e~ll~~ 386 (517)
T PRK00960 379 IRDELLKY 386 (517)
T ss_pred HHHHHHHH
Confidence 88888844
No 114
>cd04478 RPA2_DBD_D RPA2_DBD_D: A subfamily of OB folds corresponding to the OB fold of the central ssDNA-binding domain (DBD)-D of human RPA2 (also called RPA32). RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The major DNA binding activity of RPA is associated with RPA1 DBD-A and DBD-B; RPA2 DBD-D is a weak ssDNA-binding domain. RPA2 DBD-D is also involved in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. N-terminal to human RPA2 DBD-D is a domain containing all the known phosphorylation sites of RPA. Human RPA2 is phosphorylated in a cell cycle dependent manner in response to DNA dam
Probab=95.79 E-value=0.11 Score=42.55 Aligned_cols=78 Identities=13% Similarity=0.164 Sum_probs=57.5
Q ss_pred EEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCcccCCCceeEEEE
Q 013865 107 VLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQ 186 (435)
Q Consensus 107 V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~~~~~~t~~lEi~ 186 (435)
|++-|+|.++...+..+. +.|.|++++|-+.+-......+ ......+..|++|.|.|.+..-. +...|.
T Consensus 2 v~~vG~V~~~~~~~~~~~-~tL~D~TG~I~~~~W~~~~~~~---~~~~~~~~~g~~v~v~G~v~~~~-------g~~ql~ 70 (95)
T cd04478 2 VTLVGVVRNVEEQSTNIT-YTIDDGTGTIEVRQWLDDDNDD---SSEVEPIEEGTYVRVFGNLKSFQ-------GKKSIM 70 (95)
T ss_pred EEEEEEEEeeeEcccEEE-EEEECCCCcEEEEEeCCCCCcc---cccccccccCCEEEEEEEEcccC-------CeeEEE
Confidence 789999999999886655 5899999999999875332100 01135799999999999986421 457788
Q ss_pred EeEEEEeec
Q 013865 187 IKKLYCVSR 195 (435)
Q Consensus 187 v~~i~vls~ 195 (435)
+..+..+..
T Consensus 71 i~~i~~v~d 79 (95)
T cd04478 71 AFSIRPVTD 79 (95)
T ss_pred EEEEEEeCC
Confidence 888877654
No 115
>cd04482 RPA2_OBF_like RPA2_OBF_like: A subgroup of uncharacterized archaeal OB folds with similarity to the OB fold of the central ssDNA-binding domain (DBD)-D of human RPA2 (also called RPA32). RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The major DNA binding activity of RPA is associated with RPA1 DBD-A and DBD-B; RPA2 DBD-D is a weak ssDNA-binding domain. RPA2 DBD-D is also involved in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. N-terminal to human RPA2 DBD-D is a domain containing all the known phosphorylation sites of RPA. Human RPA2 is phosphorylated in a cell cycle depende
Probab=95.52 E-value=0.095 Score=43.31 Aligned_cols=75 Identities=23% Similarity=0.317 Sum_probs=54.5
Q ss_pred EEEEEEEeeeec--CCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCcccCCCceeEE
Q 013865 107 VLIRGRVHTTRP--VGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVE 184 (435)
Q Consensus 107 V~v~GrV~~~R~--~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~~~~~~t~~lE 184 (435)
.+|.|.|.+.+. .|.. +|+.|.|+++.|.|++..... .+......|..||.|.|.|.+..- + .
T Consensus 1 ~~v~GeVs~~~~~~~sGH-~yFtlkD~~~~i~cv~f~~~g----~~~~~~~~l~~Gd~V~v~G~v~~y---------~-q 65 (91)
T cd04482 1 YRVTGKVVEEPRTIEGGH-VFFKISDGTGEIDCAAYEPTK----EFRDVVRLLIPGDEVTVYGSVRPG---------T-T 65 (91)
T ss_pred CEEEEEEeCCeecCCCCC-EEEEEECCCcEEEEEEECccc----ccccccCCCCCCCEEEEEEEEecC---------C-E
Confidence 379999998754 3425 788999999999999875421 011233579999999999998542 1 5
Q ss_pred EEEeEEEEeecC
Q 013865 185 VQIKKLYCVSRA 196 (435)
Q Consensus 185 i~v~~i~vls~~ 196 (435)
|.++++.+++-.
T Consensus 66 l~ve~l~~~glg 77 (91)
T cd04482 66 LNLEKLRVIRLA 77 (91)
T ss_pred EEEEEEEECCCc
Confidence 888888887643
No 116
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=95.39 E-value=0.049 Score=57.13 Aligned_cols=117 Identities=17% Similarity=0.238 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCCCCCcc---eeEeccC---CCceeeccChHH-----HHhhhcc-CC
Q 013865 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSA---VFRLDYK---GQSACLAQSPQL-----HKQMSIC-GD 313 (435)
Q Consensus 246 ~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~egga~---~F~v~~~---~~~~~L~~Spql-----~lq~~i~-~g 313 (435)
.+.++--++++++=++..++||.|+.+|.|+...+.-|.- -|.=+.| +.++||.-..+. |-...+- ..
T Consensus 172 ~~a~L~rAL~~f~ld~~~~~Gf~e~~~P~lv~~e~m~gtgqlpkf~e~~y~v~~~~~~LipTaEvpl~~l~~~Eil~~~~ 251 (429)
T COG0172 172 KGARLERALIQFMLDLHTKHGFTEVLPPYLVNLESMFGTGQLPKFEEDLYKVEDPDLYLIPTAEVPLTNLHRDEILDEED 251 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHcCceEeeCceeecHHHhhccCCCCCCcccceEecCCCEEEEecchhhhHHhhccccccccc
Confidence 4666677888999999999999999999998654332221 1322222 226788765543 3333332 22
Q ss_pred C-ceeEEEecceecCCCCCC------ccccccccceeeeeccccHHHHHHHHHHHHHH
Q 013865 314 F-GRVFETGPVFRAEDSYTH------RHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVT 364 (435)
Q Consensus 314 ~-~rVfeIgp~FR~E~s~t~------rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~ 364 (435)
+ -+.+-.+||||.|.+... .-.-+|..+|.- .|.. .++-....|+|+..
T Consensus 252 LP~k~~~~S~cFR~EAGs~GrdtrGliRvHQF~KVE~v-~~~~-Pe~S~~~~E~m~~~ 307 (429)
T COG0172 252 LPIKYTAYSPCFRSEAGSAGKDTRGLIRVHQFDKVELV-VITK-PEESEEELEEMLGN 307 (429)
T ss_pred CCeeeEEEChhhhcccccccccccceeeeeeeeeEEEE-EEeC-cchhHHHHHHHHHH
Confidence 3 367778999999964211 123389999863 2332 45555555555543
No 117
>cd04492 YhaM_OBF_like YhaM_OBF_like: A subfamily of OB folds similar to that found in Bacillus subtilis YhaM and Staphylococcus aureus cmp-binding factor-1 (SaCBF1). Both these proteins are 3'-to-5'exoribonucleases. YhaM requires Mn2+ or Co2+ for activity and is inactive in the presence of Mg2+. YhaM also has a Mn2+ dependent 3'-to-5'single-stranded DNA exonuclease activity. SaCBF is also a double-stranded DNA binding protein, binding specifically to cmp, the replication enhancer found in S. aureus plasmid pT181. Proteins in this group combine an N-terminal OB fold with a C-terminal HD domain. The HD domain is found in metal-dependent phosphohydrolases.
Probab=95.10 E-value=0.52 Score=36.94 Aligned_cols=64 Identities=13% Similarity=0.197 Sum_probs=47.9
Q ss_pred cCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCcccCCCceeEEEEEeEEEEeec
Q 013865 118 PVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSR 195 (435)
Q Consensus 118 ~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~~~~~~t~~lEi~v~~i~vls~ 195 (435)
..|+.++++.|.|+++.+.+++..... .....+..|.+|.|.|.+..- .+..+|.+.++..+..
T Consensus 15 k~g~~~~~~~l~D~tg~i~~~~f~~~~-------~~~~~l~~g~~v~v~G~v~~~-------~~~~~l~~~~i~~l~~ 78 (83)
T cd04492 15 KNGKPYLALTLQDKTGEIEAKLWDASE-------EDEEKFKPGDIVHVKGRVEEY-------RGRLQLKIQRIRLVTE 78 (83)
T ss_pred cCCCcEEEEEEEcCCCeEEEEEcCCCh-------hhHhhCCCCCEEEEEEEEEEe-------CCceeEEEEEEEECCc
Confidence 346679999999999999999974211 224679999999999999641 1347888888876543
No 118
>cd04474 RPA1_DBD_A RPA1_DBD_A: A subfamily of OB folds corresponding to the second OB fold, the ssDNA-binding domain (DBD)-A, of human RPA1 (also called RPA70). RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). In addition to DBD-A, RPA1 contains three other OB folds: DBD-B, DBD-C, and RPA1N. The major DNA binding activity of human RPA (hRPA) and Saccharomyces cerevisiae RPA (ScRPA) is associated with DBD-A and DBD-B of RPA1. RPA1 DBD-C is involved in trimerization. The ssDNA-binding mechanism is believed to be multistep and to involve conformational change. Although ScRPA and the hRPA have similar ssDNA-binding properties, they differ funct
Probab=94.99 E-value=0.23 Score=41.85 Aligned_cols=86 Identities=14% Similarity=0.127 Sum_probs=58.3
Q ss_pred eccccCCCCCCEEEEEEEEee---ee---c---CCCceEEEEEEeC-CeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEE
Q 013865 95 VGALNGSLKDQEVLIRGRVHT---TR---P---VGNKLAFVVVRER-VSTVQCLATVKPDSVSKEMVRFVRSLSNESIVD 164 (435)
Q Consensus 95 i~~l~~~~~g~~V~v~GrV~~---~R---~---~G~kl~Fl~Lrd~-~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~ 164 (435)
|.+|.+.. ..++|+|||.+ +| . .| ++.-++|.|. ++.|+|.+-.. ...+|...|..|+++.
T Consensus 2 I~~L~p~~--~~~~I~~rV~~k~~~~~f~~~~~~g-~~~~~~l~De~~~~I~~t~~~~------~~~~f~~~l~eG~vy~ 72 (104)
T cd04474 2 ISSLNPYQ--NKWTIKARVTNKSDIRTWSNARGEG-KLFSFDLLDEDGGEIRATFFND------AVDKFYDLLEVGKVYY 72 (104)
T ss_pred hhHccCCC--CcEEEEEEEeeccccccccCCCCCc-EEEEEEEEECCCCEEEEEEehH------HHHHhhcccccccEEE
Confidence 34555432 35889999974 33 2 25 7888999999 89999999742 2345778899999999
Q ss_pred EEEEEecCCcc-cCCCceeEEEEEeE
Q 013865 165 VIGVVSVPDVE-IKGATQQVEVQIKK 189 (435)
Q Consensus 165 V~G~v~~~~~~-~~~~t~~lEi~v~~ 189 (435)
|.|--+++..+ -+.....+||....
T Consensus 73 i~~~~V~~a~~~y~~~~~~yeI~f~~ 98 (104)
T cd04474 73 ISKGSVKVANKKFNTLKNDYEITFNR 98 (104)
T ss_pred EeccEEeeccccCCCCCCcEEEEECC
Confidence 99755444322 22333568887764
No 119
>KOG2324 consensus Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=94.89 E-value=0.094 Score=53.42 Aligned_cols=122 Identities=22% Similarity=0.300 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHHHhhcCCeEEeeCceeeccC----C---C-CCcceeEec-cCCCceeeccChHHHHhhhccCCC---
Q 013865 247 IFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS----S---E-GGSAVFRLD-YKGQSACLAQSPQLHKQMSICGDF--- 314 (435)
Q Consensus 247 i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~----~---e-gga~~F~v~-~~~~~~~L~~Spql~lq~~i~~g~--- 314 (435)
-.|...++++.++.-|++-|=.+|.-|+|.+.. + + -|++.|.+. --|+.++|+-.-|=-.-.+|+.-.
T Consensus 51 g~R~~~K~~~~l~~~mqs~Ga~kIslp~ls~~~LWekTgRw~~~gsEl~rl~Dr~gkq~cL~pThEE~iT~lmat~~~ls 130 (457)
T KOG2324|consen 51 GLRVLNKLCRLLDNEMQSGGAQKISLPILSSKELWEKTGRWDAMGSELFRLHDRKGKQMCLTPTHEEDITALMATYIPLS 130 (457)
T ss_pred hHHHHHHHHHHHHHHHHhccCeeEeecccChHHHHHhcCcccccchhheEeeccCCCEeccCCchHHHHHHHHHhcCccc
Confidence 345667899999999999999999999997543 1 1 267889884 477888887544433222222211
Q ss_pred -----ceeEEEecceecCCC--CCCccccccccceeeeeccccHHHHHHHH---HHHHHHHHhhh
Q 013865 315 -----GRVFETGPVFRAEDS--YTHRHLCEFTGLDVEMEIKKHYSEVMDIV---DRLFVTIFDGL 369 (435)
Q Consensus 315 -----~rVfeIgp~FR~E~s--~t~rHl~EFt~lE~e~a~~~~~~d~m~~~---e~li~~i~~~~ 369 (435)
=+||+||+-||+|-- .+.----||.|=|+|- |..+-++.|.-- .+.-..||+.+
T Consensus 131 ykqlPi~vYQigrKfRDElrpRfGLlRgREFlMKDmYs-Fd~~~etA~qTy~~v~~aY~~iFkqL 194 (457)
T KOG2324|consen 131 YKQLPIRVYQIGRKFRDELRPRFGLLRGREFLMKDMYS-FDSDEETAQQTYQLVDQAYDRIFKQL 194 (457)
T ss_pred cccCcEEeeeechhhhhccCccccchhhHHHHHhhhhc-ccCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 279999999999951 1222336999999985 433455555432 22233455544
No 120
>PRK07374 dnaE DNA polymerase III subunit alpha; Validated
Probab=94.79 E-value=0.16 Score=59.86 Aligned_cols=86 Identities=14% Similarity=0.209 Sum_probs=63.6
Q ss_pred eccccCCCCCCEEEEEEEEeeeec----CCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEe
Q 013865 95 VGALNGSLKDQEVLIRGRVHTTRP----VGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVS 170 (435)
Q Consensus 95 i~~l~~~~~g~~V~v~GrV~~~R~----~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~ 170 (435)
+.++.....|.+|+|.|.|.++|. .|+.|+|+.|.|.++.+.+++..+ ...++...|..|.+|.|+|.|.
T Consensus 991 ~~~l~~~~~~~~v~v~g~i~~~k~~~Tk~G~~maf~~leD~tg~~e~vvFp~------~y~~~~~~l~~~~~~~v~g~v~ 1064 (1170)
T PRK07374 991 LSSLEEQPDKAKVSAIAMIPEMKQVTTRKGDRMAILQLEDLTGSCEAVVFPK------SYERLSDHLMTDTRLLVWAKVD 1064 (1170)
T ss_pred HHHHhcccCCCEEEEEEEEEEeEecccCCCCEEEEEEEEECCCCEEEEECHH------HHHHHHHHhccCCEEEEEEEEE
Confidence 344433345889999999999864 366799999999999999999843 2334556799999999999996
Q ss_pred cCCcccCCCceeEEEEEeEEEEe
Q 013865 171 VPDVEIKGATQQVEVQIKKLYCV 193 (435)
Q Consensus 171 ~~~~~~~~~t~~lEi~v~~i~vl 193 (435)
..+ +.+.|.+.++.-+
T Consensus 1065 ~~~-------~~~~~~~~~i~~l 1080 (1170)
T PRK07374 1065 RRD-------DRVQLIIDDCREI 1080 (1170)
T ss_pred ecC-------CeEEEEEeeeecH
Confidence 421 3466777776543
No 121
>cd04483 hOBFC1_like hOBFC1_like: A subfamily of OB folds similar to that found in human OB fold containing protein 1 (hOBFC1). Members of this group belong to the Replication protein A subunit 2 (RPA2) family of OB folds. RPA is a nuclear ssDNA binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The OB fold domain of RPA2 has dual roles in ssDNA binding and trimerization.
Probab=94.66 E-value=0.44 Score=39.44 Aligned_cols=76 Identities=17% Similarity=0.185 Sum_probs=52.0
Q ss_pred EEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCc-------------HHHH-HHHhcCCCCcEEEEEEEEecCCc
Q 013865 109 IRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVS-------------KEMV-RFVRSLSNESIVDVIGVVSVPDV 174 (435)
Q Consensus 109 v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s-------------~~~~-k~~~~l~~esiV~V~G~v~~~~~ 174 (435)
|-|+|.+++..... .-+.|.|+++.|-|++=......+ ..|. +....+..|++|.|.|.+..-.
T Consensus 2 ivG~V~sv~~~~~~-~~~tLdDgTG~Ie~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~G~vvrV~G~i~~fr- 79 (92)
T cd04483 2 ILGTVVSRRERETF-YSFGVDDGTGVVNCVCWKNLSYAEVSSRSDAARILKSALMALKQAKVLEIGDLLRVRGSIRTYR- 79 (92)
T ss_pred eEEEEEEEEecCCe-EEEEEecCCceEEEEEEcCcCcccccccccccccccccccccccccccCCCCEEEEEEEEeccC-
Confidence 67999999988745 456899999999999865422000 0010 2345799999999999997421
Q ss_pred ccCCCceeEEEEEeEEEE
Q 013865 175 EIKGATQQVEVQIKKLYC 192 (435)
Q Consensus 175 ~~~~~t~~lEi~v~~i~v 192 (435)
+...|.++.++.
T Consensus 80 ------g~~ql~i~~~~~ 91 (92)
T cd04483 80 ------GEREINASVVYK 91 (92)
T ss_pred ------CeeEEEEEEEEe
Confidence 356677776653
No 122
>PRK05673 dnaE DNA polymerase III subunit alpha; Validated
Probab=94.38 E-value=0.18 Score=59.22 Aligned_cols=88 Identities=20% Similarity=0.306 Sum_probs=65.7
Q ss_pred EeccccCCCCCCEEEEEEEEeeeecC----CCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEE
Q 013865 94 VVGALNGSLKDQEVLIRGRVHTTRPV----GNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVV 169 (435)
Q Consensus 94 ~i~~l~~~~~g~~V~v~GrV~~~R~~----G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v 169 (435)
.+.++.....|..|.+.|-|.++|.. |+.++|+.|.|.++.+.+++..+ ...++...|..|++|.|+|.|
T Consensus 967 ~~~~l~~~~~g~~V~v~G~I~~vk~~~TKkG~~mafltLeD~TG~iEvviFp~------~ye~~~~~L~~g~iV~V~GkV 1040 (1135)
T PRK05673 967 RLADLEPTEGGSVVTVAGLVVSVRRRVTKRGNKMAIVTLEDLSGRIEVMLFSE------ALEKYRDLLEEDRIVVVKGQV 1040 (1135)
T ss_pred CHHHHhccccCceEEEEEEEEEEEecccCCCCeEEEEEEEeCCCcEEEEECHH------HHHHHHHHhccCCEEEEEEEE
Confidence 34444333458899999999998753 66799999999999999999842 233556779999999999999
Q ss_pred ecCCcccCCCceeEEEEEeEEEEee
Q 013865 170 SVPDVEIKGATQQVEVQIKKLYCVS 194 (435)
Q Consensus 170 ~~~~~~~~~~t~~lEi~v~~i~vls 194 (435)
...+ +.+.|.++++.-+.
T Consensus 1041 e~~~-------~~~qlii~~I~~L~ 1058 (1135)
T PRK05673 1041 SFDD-------GGLRLTAREVMDLE 1058 (1135)
T ss_pred EecC-------CeEEEEEeecccHH
Confidence 6421 34677777776554
No 123
>PF04076 BOF: Bacterial OB fold (BOF) protein; InterPro: IPR005220 Proteins in this entry have an OB-fold fold (oligonucleotide/oligosaccharide binding motif). Analysis of the predicted nucleotide-binding site of the OB-fold suggests that they lack nucleic acid-binding properties. They contain an predicted N-terminal signal peptide which indicates that they localise to the periplasm where they may function to bind proteins, small molecules, or other typical OB-fold ligands. As hypothesised for the distantly related OB-fold containing bacterial enterotoxins, the loss of nucleotide-binding function and the rapid evolution of the OB-fold ligand-binding site may be associated with the presence of members in mobile genetic elements and their potential role in bacterial pathogenicity [].; PDB: 1NNX_A.
Probab=94.19 E-value=0.33 Score=41.16 Aligned_cols=79 Identities=14% Similarity=0.232 Sum_probs=51.4
Q ss_pred EEeccccCCCCCCEEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHH-hcCCCCcEEEEEEEEec
Q 013865 93 TVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFV-RSLSNESIVDVIGVVSV 171 (435)
Q Consensus 93 ~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~-~~l~~esiV~V~G~v~~ 171 (435)
+.+.++.....+..|++.|+|.+.-..- + |.++|+++.|+|-++... |. ..+++++.|.|.|.|-+
T Consensus 23 ~TV~~a~~~~Dd~~V~L~G~Iv~~l~~d-~---Y~F~D~TG~I~VeId~~~---------w~g~~vt~~~~Vri~GeVDk 89 (103)
T PF04076_consen 23 TTVAQAKNAKDDTPVTLEGNIVKQLGDD-K---YLFRDATGEIEVEIDDDV---------WRGQTVTPDDKVRISGEVDK 89 (103)
T ss_dssp --HHHHTTS-SSEEEEEEEEEEEEEETT-E---EEEEETTEEEEEE--GGG---------STT----TTSEEEEEEEEEE
T ss_pred EeHHHHhhCcCCCeEEEEEEEEEEecCC-E---EEEECCCCcEEEEEChhh---------cCCcccCCCCEEEEEEEEeC
Confidence 3444555567799999999987754332 3 789999999999988541 22 35899999999999974
Q ss_pred CCcccCCCceeEEEEEeEEE
Q 013865 172 PDVEIKGATQQVEVQIKKLY 191 (435)
Q Consensus 172 ~~~~~~~~t~~lEi~v~~i~ 191 (435)
.. ...+|.|..|.
T Consensus 90 ~~-------~~~~IdV~~I~ 102 (103)
T PF04076_consen 90 DW-------NKTEIDVDRIE 102 (103)
T ss_dssp ET-------TEEEEEEEEEE
T ss_pred CC-------CceEEEEEEEE
Confidence 32 24778777764
No 124
>COG0423 GRS1 Glycyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=94.18 E-value=0.11 Score=55.33 Aligned_cols=29 Identities=24% Similarity=0.597 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHhhc--CCeEEeeCceeec
Q 013865 249 RIQSQVGNIFRQFLLS--ENFVEIHTPKLIA 277 (435)
Q Consensus 249 ~~rs~i~~~~r~fl~~--~gF~EV~TP~l~~ 277 (435)
.++..|.++.|++|-. .+++||+||+|.+
T Consensus 41 ~LK~nI~~~Wrk~fV~~~e~~~eIdtpii~p 71 (558)
T COG0423 41 ELKNNIKEAWRKSFVTEREDVVEIDTPIILP 71 (558)
T ss_pred HHHHHHHHHHHHHHeeccCCeEEecccccCc
Confidence 4567899999999976 5899999999975
No 125
>PRK06920 dnaE DNA polymerase III DnaE; Reviewed
Probab=93.98 E-value=0.33 Score=56.89 Aligned_cols=79 Identities=16% Similarity=0.279 Sum_probs=60.9
Q ss_pred CCCCEEEEEEEEeeeec----CCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCcccC
Q 013865 102 LKDQEVLIRGRVHTTRP----VGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIK 177 (435)
Q Consensus 102 ~~g~~V~v~GrV~~~R~----~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~~~~ 177 (435)
..|..|+|.|.|.++|. .|+.|+|+.|.|.++.+.+++..+ ...++...|..+.+|.|+|.+...
T Consensus 941 ~~~~~v~v~g~i~~~~~~~tk~g~~maf~~leD~tg~~e~~vFp~------~y~~~~~~l~~~~~~~v~G~v~~~----- 1009 (1107)
T PRK06920 941 HKKKVQRAIVYITSVKVIRTKKGQKMAFITFCDQNDEMEAVVFPE------TYIHFSDKLQEGAIVLVDGTIELR----- 1009 (1107)
T ss_pred cCCCEEEEEEEEEEeEeecCCCCCeEEEEEEeeCCCcEEEEECHH------HHHHHHHHhccCCEEEEEEEEEec-----
Confidence 45789999999999864 367899999999999999999843 233455679999999999999642
Q ss_pred CCceeEEEEEeEEEEe
Q 013865 178 GATQQVEVQIKKLYCV 193 (435)
Q Consensus 178 ~~t~~lEi~v~~i~vl 193 (435)
.+...|.+.++.-+
T Consensus 1010 --~~~~~~~~~~i~~l 1023 (1107)
T PRK06920 1010 --NHKLQWIVNGLYPL 1023 (1107)
T ss_pred --CCcEEEEEeecccH
Confidence 13466777776543
No 126
>PRK09616 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed
Probab=93.95 E-value=0.29 Score=53.28 Aligned_cols=111 Identities=17% Similarity=0.238 Sum_probs=71.6
Q ss_pred HHHHHHHHHhhcCCeEEeeCceeeccCC--C----CCc-ceeEe-cc-CCCceeeccC--hHHHHhhhcc-CCC--ceeE
Q 013865 253 QVGNIFRQFLLSENFVEIHTPKLIAGSS--E----GGS-AVFRL-DY-KGQSACLAQS--PQLHKQMSIC-GDF--GRVF 318 (435)
Q Consensus 253 ~i~~~~r~fl~~~gF~EV~TP~l~~~~~--e----gga-~~F~v-~~-~~~~~~L~~S--pql~lq~~i~-~g~--~rVf 318 (435)
.+.+.+|++|...||.|+-|..+++..- + ... .+..+ |- -..-.+||.| |.|..-..-- .+. -|+|
T Consensus 363 ~~~~~ir~~L~~~Gf~Ev~tys~~s~~~~~~~~~~~~~~~~i~l~NPls~e~svLRtsLlpgLL~~~~~N~~~~~~~~lF 442 (552)
T PRK09616 363 KLERAIRDLMVGLGFQEVMNFTLTSEEVLFEKMNLEPEEDYVEVLNPISEDYTVVRTSLLPSLLEFLSNNKHREYPQKIF 442 (552)
T ss_pred HHHHHHHHHHHhCCcceeccceEechHHHHHHhCCCCCCCeEEEcCCCccchheEeccchHHHHHHHHhccCCCCCeeEE
Confidence 4566789999999999999999985411 1 011 12222 22 2344577766 4444332110 111 3899
Q ss_pred EEecceecCCCCCCccccccccceeeeecc-ccHHHHHHHHHHHHHH
Q 013865 319 ETGPVFRAEDSYTHRHLCEFTGLDVEMEIK-KHYSEVMDIVDRLFVT 364 (435)
Q Consensus 319 eIgp~FR~E~s~t~rHl~EFt~lE~e~a~~-~~~~d~m~~~e~li~~ 364 (435)
|||+||+.+.. +..|..|++++-+-++.. -++.|+..+++.++..
T Consensus 443 EiG~Vf~~~~~-~~~~~~e~~~l~~~~~g~~~df~dlKg~ve~ll~~ 488 (552)
T PRK09616 443 EIGDVVLIDES-TETGTRTERKLAAAIAHSEASFTEIKSVVQALLRE 488 (552)
T ss_pred EeeEEEecCCc-cccCcchhhEEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 99999998652 345778999998877763 1488888888888864
No 127
>cd04490 PolII_SU_OBF PolII_SU_OBF: A subfamily of OB folds corresponding to the OB fold found in Pyrococcus abyssi DNA polymerase II (PolII) small subunit. PolII is a family D DNA polymerase, having a 3-prime to 5-prime exonuclease activity. P. abyssi PolII is heterodimeric. The large subunit appears to be the polymerase, and the small subunit may be the exonuclease. The small subunit contains a calcineurin-like phosphatase superfamily domain C-terminal to this OB-fold domain.
Probab=93.92 E-value=1.1 Score=35.96 Aligned_cols=57 Identities=23% Similarity=0.288 Sum_probs=44.6
Q ss_pred EEEEEEEeeeec--CCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHH--HHHhcCCCCcEEEEEEEEec
Q 013865 107 VLIRGRVHTTRP--VGNKLAFVVVRERVSTVQCLATVKPDSVSKEMV--RFVRSLSNESIVDVIGVVSV 171 (435)
Q Consensus 107 V~v~GrV~~~R~--~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~--k~~~~l~~esiV~V~G~v~~ 171 (435)
|.++|-|.++|. .| +- |+.|-|.++++.+++.... .. ++...|..+.+|.|+|.+..
T Consensus 2 v~i~GiI~~v~~TK~g-~~-~~~leD~~G~~Ev~~F~~~------~~~~~~~~~l~~d~~v~v~g~v~~ 62 (79)
T cd04490 2 VSIIGMVNDVRSTKNG-HR-IVELEDTTGRITVLLTKDK------EELFEEAEDILPDEVIGVSGTVSK 62 (79)
T ss_pred EEEEEEEeEEEEcCCC-CE-EEEEECCCCEEEEEEeCch------hhhhhhhhhccCCCEEEEEEEEec
Confidence 678888888872 24 34 9999999999999998542 23 45667999999999999843
No 128
>PRK05672 dnaE2 error-prone DNA polymerase; Validated
Probab=93.79 E-value=0.32 Score=56.79 Aligned_cols=86 Identities=15% Similarity=0.117 Sum_probs=64.1
Q ss_pred cccCCCCCCEEEEEEEEeeeecC--CCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCc
Q 013865 97 ALNGSLKDQEVLIRGRVHTTRPV--GNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDV 174 (435)
Q Consensus 97 ~l~~~~~g~~V~v~GrV~~~R~~--G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~ 174 (435)
+|.....|..|+|+|.|..++.. .++|+|+.|-|.++.+.+++..+ ...++...|..|+++.|+|.+...
T Consensus 946 ~l~~~~~~~~v~v~g~i~~~~~~~TkkGmaf~~leD~~g~~e~~ifp~------~~~~~~~~l~~~~~~~v~g~v~~~-- 1017 (1046)
T PRK05672 946 ELLDVEDGRRVRVAGVVTHRQRPGTASGVTFLTLEDETGMVNVVVWPG------LWERQRREALGARLLLVRGRVQNA-- 1017 (1046)
T ss_pred HHhhccCCCEEEEEEEEEEEEEecCCCceEEEEEecCCCCEEEEECHH------HHHHHHHHhccCCEEEEEEEEEec--
Confidence 44333468899999999987664 33599999999999999999843 233455679999999999999642
Q ss_pred ccCCCceeEEEEEeEEEEeec
Q 013865 175 EIKGATQQVEVQIKKLYCVSR 195 (435)
Q Consensus 175 ~~~~~t~~lEi~v~~i~vls~ 195 (435)
.+.+.|.+.++.-+..
T Consensus 1018 -----~~~~~~~~~~i~~~~~ 1033 (1046)
T PRK05672 1018 -----EGVRHLVADRLEDLSP 1033 (1046)
T ss_pred -----CCeEEEEEeeeechHH
Confidence 1346788888765543
No 129
>PRK06826 dnaE DNA polymerase III DnaE; Reviewed
Probab=93.67 E-value=0.48 Score=55.85 Aligned_cols=79 Identities=18% Similarity=0.313 Sum_probs=60.9
Q ss_pred CCCEEEEEEEEeeeec----CCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCcccCC
Q 013865 103 KDQEVLIRGRVHTTRP----VGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKG 178 (435)
Q Consensus 103 ~g~~V~v~GrV~~~R~----~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~~~~~ 178 (435)
.|..|+|.|.|.++|. .|+.|+|+.|.|.++.+.+++..+ ...++...|..|.+|.|+|.+....
T Consensus 990 ~~~~v~v~g~i~~~~~~~tk~G~~maf~~leD~~g~~e~~vfp~------~~~~~~~~l~~~~~~~v~g~v~~~~----- 1058 (1151)
T PRK06826 990 DGDKVIIGGIITEVKRKTTRNNEMMAFLTLEDLYGTVEVIVFPK------VYEKYRSLLNEDNIVLIKGRVSLRE----- 1058 (1151)
T ss_pred CCcEEEEEEEEEEeEeeccCCCCeEEEEEEEECCCcEEEEECHH------HHHHHHHHhccCCEEEEEEEEEecC-----
Confidence 5789999999999874 366799999999999999999843 3345556799999999999996321
Q ss_pred CceeEEEEEeEEEEe
Q 013865 179 ATQQVEVQIKKLYCV 193 (435)
Q Consensus 179 ~t~~lEi~v~~i~vl 193 (435)
.+.+.|.+.++.-+
T Consensus 1059 -~~~~~~~~~~~~~l 1072 (1151)
T PRK06826 1059 -DEEPKLICEEIEPL 1072 (1151)
T ss_pred -CCceEEEEeeeecH
Confidence 12467777776544
No 130
>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=93.53 E-value=0.1 Score=57.04 Aligned_cols=116 Identities=21% Similarity=0.192 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHhhcCCeEEeeCceeeccC---CCCCcc-----eeEeccCCCceeeccCh-----HHHHhhhccC-CC
Q 013865 249 RIQSQVGNIFRQFLLSENFVEIHTPKLIAGS---SEGGSA-----VFRLDYKGQSACLAQSP-----QLHKQMSICG-DF 314 (435)
Q Consensus 249 ~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~---~egga~-----~F~v~~~~~~~~L~~Sp-----ql~lq~~i~~-g~ 314 (435)
.+|..+.+++|.-....||.||.||.|.... ..|... .|.+..-++.+.|+--- +.|+..+.+- .+
T Consensus 221 ~ir~~le~y~~~~~~~~Gy~~V~TP~~~~~~l~~~SGH~~~y~e~mf~~~~~~~~~~lKpmNCpgh~~ifk~~~~SYR~L 300 (589)
T COG0441 221 TIRNLLEDYVRTKLRSYGYQEVKTPVLADLELWELSGHWDNYKEDMFLTESDDREYALKPMNCPGHILIFKSGLRSYREL 300 (589)
T ss_pred cHHHHHHHHHHHHHHhcCceEecCCeeeecccchhccchhhccccceeeccCChhheeeeccCHhHHHHHhcCCcceecc
Confidence 5678899999999999999999999986432 122111 22222222333333211 2344432211 11
Q ss_pred -ceeEEEecceecCCCC---CCccccccccceeeeeccccHHHHHHHHHHHHHHHH
Q 013865 315 -GRVFETGPVFRAEDSY---THRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIF 366 (435)
Q Consensus 315 -~rVfeIgp~FR~E~s~---t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~ 366 (435)
-|.+|+|.|||.|.|. +.+=+-.|||=|.-+ |+. .+.+.+.+.+.+..+.
T Consensus 301 P~r~~E~g~v~R~E~SGal~GL~RvR~ftqdDaHi-fc~-~dQi~~E~~~~~~~i~ 354 (589)
T COG0441 301 PLRLAEFGYVYRYEKSGALHGLMRVRGFTQDDAHI-FCT-PDQIKDEFKGILELIL 354 (589)
T ss_pred chhhhhcceeecccCcchhhccccccceeecccce-ecc-HHHHHHHHHHHHHHHH
Confidence 2899999999999862 234467899988744 333 3455555444444433
No 131
>PRK07279 dnaE DNA polymerase III DnaE; Reviewed
Probab=93.06 E-value=0.59 Score=54.34 Aligned_cols=75 Identities=12% Similarity=0.244 Sum_probs=57.7
Q ss_pred CCEEEEEEEEeeeec-----CCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCcccCC
Q 013865 104 DQEVLIRGRVHTTRP-----VGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKG 178 (435)
Q Consensus 104 g~~V~v~GrV~~~R~-----~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~~~~~ 178 (435)
|..+.+.|+|.++|. .|+.|+|+.|.|.++.+.+++..+ ...++...|..+.+|.|+|.|...
T Consensus 884 ~~~~~~~~~i~~~~~~~tk~~g~~maf~~leD~~g~ie~~vFp~------~y~~~~~~l~~~~~~~v~G~v~~~------ 951 (1034)
T PRK07279 884 NSEATILVQIQSIRVIRTKTKGQQMAFLSVTDTKKKLDVTLFPE------TYRQYKDELKEGKFYYLKGKIQER------ 951 (1034)
T ss_pred CCcceEEEEEEEEEEEEEcCCCCeEEEEEEeeCCCcEEEEECHH------HHHHHHHHhccCCEEEEEEEEEec------
Confidence 677889999987652 577899999999999999999843 334556779999999999999642
Q ss_pred CceeEEEEEeEEE
Q 013865 179 ATQQVEVQIKKLY 191 (435)
Q Consensus 179 ~t~~lEi~v~~i~ 191 (435)
.+.+.|.++++.
T Consensus 952 -~~~~~l~~~~i~ 963 (1034)
T PRK07279 952 -DGRLQMVLQQIQ 963 (1034)
T ss_pred -CCeeEEEEeeee
Confidence 134667666664
No 132
>TIGR00156 conserved hypothetical protein TIGR00156. As of the last revision, this family consists only of two proteins from Escherichia coli and one from the related species Haemophilus influenzae.
Probab=93.00 E-value=0.71 Score=40.58 Aligned_cols=79 Identities=13% Similarity=0.247 Sum_probs=57.3
Q ss_pred EEeccccCCCCCCEEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHh-cCCCCcEEEEEEEEec
Q 013865 93 TVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVR-SLSNESIVDVIGVVSV 171 (435)
Q Consensus 93 ~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~-~l~~esiV~V~G~v~~ 171 (435)
+.+++......+..|++.|.|...-..- . |.+||++++|.|-++.. .|.. .+.+++-|.|.|.|-+
T Consensus 46 ~tV~~a~~~~Ddt~V~L~G~Iv~~l~~d-~---Y~F~D~TG~I~VeId~~---------~w~G~~v~p~d~V~I~GeVDk 112 (126)
T TIGR00156 46 MTVDFAKSMHDGASVTLRGNIISHIGDD-R---YVFRDKSGEINVVIPAA---------VWNGREVQPKDMVNISGSLDK 112 (126)
T ss_pred EeHHHHhhCCCCCEEEEEEEEEEEeCCc-e---EEEECCCCCEEEEECHH---------HcCCCcCCCCCEEEEEEEECC
Confidence 4555555567799999999998754432 2 78999999999998742 2443 5889999999999864
Q ss_pred CCcccCCCceeEEEEEeEEE
Q 013865 172 PDVEIKGATQQVEVQIKKLY 191 (435)
Q Consensus 172 ~~~~~~~~t~~lEi~v~~i~ 191 (435)
.- ...||-|..|.
T Consensus 113 ~~-------~~~~IdV~~I~ 125 (126)
T TIGR00156 113 KS-------APAEVDVTHIQ 125 (126)
T ss_pred CC-------CCeEEEEEEEE
Confidence 21 23677777664
No 133
>PF10451 Stn1: Telomere regulation protein Stn1; InterPro: IPR018856 The budding yeast protein Stn1 is a DNA-binding protein which has specificity for telomeric DNA. Structural profiling has predicted an OB-fold []. This entry represents the N-terminal part of the molecule, which adopts the OB fold. Protection of telomeres by multiple proteins with OB-fold domains is conserved in eukaryotic evolution [].; PDB: 3KF6_A 3KF8_A.
Probab=92.61 E-value=0.45 Score=46.83 Aligned_cols=76 Identities=17% Similarity=0.210 Sum_probs=53.0
Q ss_pred CCEEEEEEEEeeeecC----CCceEEEEEEeCCe--EEEEEEeeCCCC-CcHHHHHHHhcCCCCcEEEEEEEEecCCccc
Q 013865 104 DQEVLIRGRVHTTRPV----GNKLAFVVVRERVS--TVQCLATVKPDS-VSKEMVRFVRSLSNESIVDVIGVVSVPDVEI 176 (435)
Q Consensus 104 g~~V~v~GrV~~~R~~----G~kl~Fl~Lrd~~~--~iQvv~~~~~~~-~s~~~~k~~~~l~~esiV~V~G~v~~~~~~~ 176 (435)
=+.|.|.|.|..+.-. . +-.|+.|-|+++ .|.|++..+... .+. -+..+ .|++|.|.|.+..
T Consensus 66 I~~v~i~G~Vv~~~~~~~~~~-~~~~l~iDD~Sg~~~i~~~~~~~~~~~~~l----~~~~~-~G~~V~VkG~vsr----- 134 (256)
T PF10451_consen 66 IRWVRIVGVVVGIDYKWIENE-DRIILTIDDSSGANTIECKCSKSSYLSMGL----PINDL-IGKVVEVKGTVSR----- 134 (256)
T ss_dssp E-EEEEEEEEEEEEEEE-BBT-CEEEEEEE-SSCS-EEEEEEEHHHHHCCCH----HCTT--TT-EEEEEEEEES-----
T ss_pred cEEEEEEEEEEEEEEEeeccc-ceEEEEEeCCCCceeEEEEEEcccccccCC----CccCC-CCcEEEEEEEEcc-----
Confidence 3579999999998754 4 568899999998 899999864210 111 12345 9999999999972
Q ss_pred CCCceeEEEEEeEEEEee
Q 013865 177 KGATQQVEVQIKKLYCVS 194 (435)
Q Consensus 177 ~~~t~~lEi~v~~i~vls 194 (435)
+..+|.++.|.++.
T Consensus 135 ----~~~ql~ve~i~~~~ 148 (256)
T PF10451_consen 135 ----NERQLDVERIELVR 148 (256)
T ss_dssp ----SSEEEEEEEEEEET
T ss_pred ----CcEEEEEEEEEccC
Confidence 35789999988764
No 134
>TIGR00389 glyS_dimeric glycyl-tRNA synthetase, dimeric type. This model describes a glycyl-tRNA synthetase distinct from the two alpha and two beta chains of the tetrameric E. coli glycyl-tRNA synthetase. This enzyme is a homodimeric class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes His, Ser, Pro, and this set of glycyl-tRNA synthetases.
Probab=92.47 E-value=0.14 Score=55.51 Aligned_cols=30 Identities=27% Similarity=0.540 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHh-hcCCeEEeeCceeec
Q 013865 248 FRIQSQVGNIFRQFL-LSENFVEIHTPKLIA 277 (435)
Q Consensus 248 ~~~rs~i~~~~r~fl-~~~gF~EV~TP~l~~ 277 (435)
..++..|.+.+|++| ...|++||.||+|++
T Consensus 37 ~~lk~ni~~~wr~~~v~~~~~~ei~~~~i~~ 67 (551)
T TIGR00389 37 AVLKNNIKNAWRKFFIKNERVLEIDTPIITP 67 (551)
T ss_pred HHHHHHHHHHHHHHHHhcCCceEeeccccCC
Confidence 457788999999988 478999999999986
No 135
>TIGR00469 pheS_mito phenylalanyl-tRNA synthetase, mitochondrial. Unlike all other known phenylalanyl-tRNA synthetases, the mitochondrial form demonstrated from yeast is monomeric. It is similar to but longer than the alpha subunit (PheS) of the alpha 2 beta 2 form found in Bacteria, Archaea, and eukaryotes, and shares the characteristic motifs of class II aminoacyl-tRNA ligases. This alignment models the experimental example from Saccharomyces cerevisiae (designated MSF1) and its orthologs from other eukaryotic species.
Probab=92.45 E-value=0.74 Score=48.82 Aligned_cols=52 Identities=17% Similarity=0.231 Sum_probs=36.9
Q ss_pred eccCCCceeec--cChHHHHhhhccCCCc-------eeEEEecceecCCCCCCcccccccccee
Q 013865 289 LDYKGQSACLA--QSPQLHKQMSICGDFG-------RVFETGPVFRAEDSYTHRHLCEFTGLDV 343 (435)
Q Consensus 289 v~~~~~~~~L~--~Spql~lq~~i~~g~~-------rVfeIgp~FR~E~s~t~rHl~EFt~lE~ 343 (435)
+-|++....|| +|+-.-- +|-.+.+ ++...|.|||.+.. +.+|.|-|.|+|-
T Consensus 101 T~Yi~~~~lLRTHTSa~q~~--~~~~~~~~~~~~~~~~i~~G~VYRrD~i-DatH~p~FHQ~EG 161 (460)
T TIGR00469 101 CYYINEQHLLRAHTSAHELE--CFQGGLDDSDNIKSGFLISADVYRRDEI-DKTHYPVFHQADG 161 (460)
T ss_pred ceEecCCceeCCCCcHHHHH--HHHhccccCCCcceeeEeecceeeCCCC-ccccCccceeeEE
Confidence 34677888888 4552221 2222332 48899999999985 8999999999993
No 136
>PRK10053 hypothetical protein; Provisional
Probab=92.09 E-value=1.1 Score=39.58 Aligned_cols=79 Identities=14% Similarity=0.275 Sum_probs=57.4
Q ss_pred EEeccccCCCCCCEEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHh-cCCCCcEEEEEEEEec
Q 013865 93 TVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVR-SLSNESIVDVIGVVSV 171 (435)
Q Consensus 93 ~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~-~l~~esiV~V~G~v~~ 171 (435)
+.+.+......+..|++.|.|...= |.. =|.+||+++.|+|-++.. .|.. .+.+.+-|.|.|.|-+
T Consensus 50 ~tV~~a~~~~Dd~~V~L~G~Iv~~l--g~d--~Y~F~D~tG~I~VeID~~---------~w~G~~v~p~~kV~I~GevDk 116 (130)
T PRK10053 50 MTVEQAKTMHDGATVSLRGNLIDHK--GDD--RYVFRDKSGEINVIIPAA---------VFDGREVQPDQMININGSLDK 116 (130)
T ss_pred EEHHHhhcCcCCCeEEEEEEEEEEe--CCc--eEEEECCCCcEEEEeCHH---------HcCCCcCCCCCEEEEEEEECC
Confidence 3555555567799999999997643 322 278999999999998743 2443 6999999999999864
Q ss_pred CCcccCCCceeEEEEEeEEE
Q 013865 172 PDVEIKGATQQVEVQIKKLY 191 (435)
Q Consensus 172 ~~~~~~~~t~~lEi~v~~i~ 191 (435)
.- ...+|-|..|.
T Consensus 117 ~~-------~~~~IdV~~i~ 129 (130)
T PRK10053 117 KS-------APPVVRVTHLQ 129 (130)
T ss_pred CC-------CCeEEEEEEEe
Confidence 21 24677777764
No 137
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=91.97 E-value=0.6 Score=49.12 Aligned_cols=75 Identities=12% Similarity=0.219 Sum_probs=58.5
Q ss_pred CEEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEec-CCcccCCCceeE
Q 013865 105 QEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSV-PDVEIKGATQQV 183 (435)
Q Consensus 105 ~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~-~~~~~~~~t~~l 183 (435)
..|||+|-|.+++...+.-.|+.|.|....|+|++...... +.--.+.-|.-|.|.|.+.. ++ .|.+
T Consensus 24 ~~V~v~GEISn~t~~~sgH~YFtLKD~~A~i~c~mf~~~~~------~l~f~p~eG~~V~v~G~is~Y~~------rG~Y 91 (440)
T COG1570 24 GQVWVRGEISNFTRPASGHLYFTLKDERAQIRCVMFKGNNR------RLKFRPEEGMQVLVRGKISLYEP------RGDY 91 (440)
T ss_pred CeEEEEEEecCCccCCCccEEEEEccCCceEEEEEEcCccc------ccCCCccCCCEEEEEEEEEEEcC------CCce
Confidence 46999999999986655568999999999999999875431 11124789999999999873 33 2578
Q ss_pred EEEEeEEE
Q 013865 184 EVQIKKLY 191 (435)
Q Consensus 184 Ei~v~~i~ 191 (435)
.|.+.++.
T Consensus 92 Qi~~~~~~ 99 (440)
T COG1570 92 QIVAESME 99 (440)
T ss_pred EEEEecCC
Confidence 88888876
No 138
>COG3111 Periplasmic protein with OB-fold [Function unknown]
Probab=91.84 E-value=1.2 Score=38.95 Aligned_cols=84 Identities=18% Similarity=0.234 Sum_probs=60.8
Q ss_pred cceEEeccccCCCCCCEEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHH-hcCCCCcEEEEEEE
Q 013865 90 REWTVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFV-RSLSNESIVDVIGV 168 (435)
Q Consensus 90 ~~~~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~-~~l~~esiV~V~G~ 168 (435)
...+.+.+....+.+..|+++|-|-. ..|.- . |.+||++++|+|.++... |. ..+.+.+-|.|.|.
T Consensus 43 ~~~~TV~~Ak~~~Dda~V~l~GnIv~--qi~~D-~-y~FrD~sGeI~VeIdd~~---------w~g~tv~P~dkV~I~Ge 109 (128)
T COG3111 43 AKVTTVDQAKTLHDDAWVSLEGNIVR--QIGDD-R-YVFRDASGEINVDIDDKV---------WNGQTVTPKDKVRIQGE 109 (128)
T ss_pred cceeEHHHhhccccCCeEEEEeeEEE--eeCCc-e-EEEEcCCccEEEEecccc---------cCCcccCcccEEEEEeE
Confidence 34456665556678999999999865 33322 2 689999999999998542 33 35899999999999
Q ss_pred EecCCcccCCCceeEEEEEeEEEEe
Q 013865 169 VSVPDVEIKGATQQVEVQIKKLYCV 193 (435)
Q Consensus 169 v~~~~~~~~~~t~~lEi~v~~i~vl 193 (435)
|-+-- ...||-|..|..+
T Consensus 110 vDk~~-------~~~eIdV~~I~k~ 127 (128)
T COG3111 110 VDKDW-------NSVEIDVKHIEKL 127 (128)
T ss_pred EcCCC-------ccceeEhhheEec
Confidence 86421 2478888887764
No 139
>cd00769 PheRS_beta_core Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer. While the alpha chain contains a catalytic core domain, the beta chain has a non-catalytic core domain.
Probab=91.57 E-value=0.46 Score=44.48 Aligned_cols=109 Identities=21% Similarity=0.283 Sum_probs=61.3
Q ss_pred HHHHHHHHHhhcCCeEEeeCceeeccC-CC----CCcceeEe-cc-CCCceeeccC--hHHHHhhhc--cCC--CceeEE
Q 013865 253 QVGNIFRQFLLSENFVEIHTPKLIAGS-SE----GGSAVFRL-DY-KGQSACLAQS--PQLHKQMSI--CGD--FGRVFE 319 (435)
Q Consensus 253 ~i~~~~r~fl~~~gF~EV~TP~l~~~~-~e----gga~~F~v-~~-~~~~~~L~~S--pql~lq~~i--~~g--~~rVfe 319 (435)
.+.+.+|++|...||.||-|..+++.. .+ +...+.++ |- -..--+||.| |.|..-..- ..+ --|+||
T Consensus 4 ~~~~~ir~~L~~~G~~E~~tys~~~~~~~~~~~~~~~~~i~l~NPis~e~~~lR~sLlp~LL~~~~~N~~~~~~~~~lFE 83 (198)
T cd00769 4 KLERKLRRLLAGLGFQEVITYSLTSPEEAELFDGGLDEAVELSNPLSEEYSVLRTSLLPGLLDALARNLNRKNKPLRLFE 83 (198)
T ss_pred HHHHHHHHHHHHCCCceeecccCCCHHHHHhccCCCCCeEEEcCCCchhHHHHHHHHHHHHHHHHHHHhcCCCCCEeEEE
Confidence 456678999999999999999997541 11 11122222 11 2233456655 333332211 112 239999
Q ss_pred EecceecCCCCCCccccccccceeeeeccc------------cHHHHHHHHHHHHHHH
Q 013865 320 TGPVFRAEDSYTHRHLCEFTGLDVEMEIKK------------HYSEVMDIVDRLFVTI 365 (435)
Q Consensus 320 Igp~FR~E~s~t~rHl~EFt~lE~e~a~~~------------~~~d~m~~~e~li~~i 365 (435)
||+||..... +..|.+.+=.-++... ++.|+-..++.++..+
T Consensus 84 iG~vf~~~~~----~~~e~~~l~~~~~g~~~~~~w~~~~~~~~f~~~Kg~ve~ll~~l 137 (198)
T cd00769 84 IGRVFLKDED----GPEEEEHLAALLSGNREPESWQGKGRPVDFYDAKGILEALLRAL 137 (198)
T ss_pred eEeEEecCCC----CCcchheEEEEEECCCccccccCCCCccCHhhHHHHHHHHHHHc
Confidence 9999976431 2235554444333321 4777777777777543
No 140
>cd04479 RPA3 RPA3: A subfamily of OB folds similar to human RPA3 (also called RPA14). RPA3 is the smallest subunit of Replication protein A (RPA). RPA is a nuclear ssDNA binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). RPA3 is believed to have a structural role in assembly of the RPA heterotrimer.
Probab=91.45 E-value=1.7 Score=36.60 Aligned_cols=55 Identities=22% Similarity=0.238 Sum_probs=41.0
Q ss_pred CCCCCCEEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEe
Q 013865 100 GSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVS 170 (435)
Q Consensus 100 ~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~ 170 (435)
..+.|+.|++-|+|.+.+.. .+.....+++.++|.++.. ..+..+-+|.|.|+|.
T Consensus 11 ~~f~gk~V~ivGkV~~~~~~----~~~~~~~Dg~~v~v~l~~~------------~~~~~~~~vEViG~V~ 65 (101)
T cd04479 11 SQFVGKTVRIVGKVEKVDGD----SLTLISSDGVNVTVELNRP------------LDLPISGYVEVIGKVS 65 (101)
T ss_pred HhhCCCEEEEEEEEEEecCC----eEEEEcCCCCEEEEEeCCC------------CCcccCCEEEEEEEEC
Confidence 35789999999999999864 2333334456999998743 1466788999999985
No 141
>COG3705 HisZ ATP phosphoribosyltransferase involved in histidine biosynthesis [Amino acid transport and metabolism]
Probab=91.43 E-value=0.52 Score=49.04 Aligned_cols=115 Identities=20% Similarity=0.286 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHHhhcCCeEEeeCceeeccCC---CCCc----ceeEe-ccCCCceeec--cChHHHHhh--hccCCCc
Q 013865 248 FRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS---EGGS----AVFRL-DYKGQSACLA--QSPQLHKQM--SICGDFG 315 (435)
Q Consensus 248 ~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~---egga----~~F~v-~~~~~~~~L~--~Spql~lq~--~i~~g~~ 315 (435)
.+....|.+.++..|...||..|+||+|....+ +.|. ..|++ +-.|..++|| ..+++-..- .+.+.-.
T Consensus 17 ~~~~~~i~~~l~~~f~~~Gy~~v~tP~lE~~d~~l~~~g~~l~~~~f~l~d~~g~~l~LRpD~T~pVaR~~~~~~~~~P~ 96 (390)
T COG3705 17 ARRKEEIRDQLLALFRAWGYERVETPTLEPADPLLDGAGEDLRRRLFKLEDETGGRLGLRPDFTIPVARIHATLLAGTPL 96 (390)
T ss_pred HhhHHHHHHHHHHHHHHhCCccccccccchhhhhhhccchhhhhhheEEecCCCCeEEecccccHHHHHHHHHhcCCCCc
Confidence 345567888889999999999999999986652 2122 26876 4467778888 334433321 1233568
Q ss_pred eeEEEecceecCCCCCCccccccccceeeeeccccH---HHHHHHHHHHHH
Q 013865 316 RVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHY---SEVMDIVDRLFV 363 (435)
Q Consensus 316 rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~---~d~m~~~e~li~ 363 (435)
|++..|+|||+... -+.-..||+|.-+|+=+.+.. -+++.++-.+++
T Consensus 97 Rl~Y~G~Vfr~~~~-~~g~~~Ef~QaGiEllG~~~~~ADaEvi~la~~~L~ 146 (390)
T COG3705 97 RLSYAGKVFRAREG-RHGRRAEFLQAGIELLGDDSAAADAEVIALALAALK 146 (390)
T ss_pred eeeecchhhhcchh-ccCcccchhhhhhHHhCCCcchhhHHHHHHHHHHHH
Confidence 99999999998732 333345999998887553211 244444444443
No 142
>TIGR00617 rpa1 replication factor-a protein 1 (rpa1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=91.34 E-value=1.9 Score=47.59 Aligned_cols=98 Identities=13% Similarity=0.183 Sum_probs=70.0
Q ss_pred cceEEeccccCCCCCCEEEEEEEEee---eec------CCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCC
Q 013865 90 REWTVVGALNGSLKDQEVLIRGRVHT---TRP------VGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNE 160 (435)
Q Consensus 90 ~~~~~i~~l~~~~~g~~V~v~GrV~~---~R~------~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~e 160 (435)
..++.|.+|.+-. ...+|+|||.+ +|. .| ++.-++|.|.++.|++.+... ..-+|...|..|
T Consensus 178 ~~~~pI~~L~py~--~~wtIkaRV~~Ks~ir~~~~~~geg-kvfsv~L~Degg~Irat~f~~------~~dkf~~~l~eG 248 (608)
T TIGR00617 178 RRVMPIASLSPYQ--NKWTIKARVTNKSEIRTWSNARGEG-KLFNVELLDESGEIRATAFNE------QADKFYDIIQEG 248 (608)
T ss_pred cceEEHHHCCCCC--CceEEEEEEEeccccceecCCCCCc-eeeEEEEecCCCeEEEEECch------HHHHHhhhcccC
Confidence 3578999998743 34999999975 332 35 778889999999999999742 234677889999
Q ss_pred cEEEEEE-EEecCCcccCCCceeEEEEEeEEEEeecC
Q 013865 161 SIVDVIG-VVSVPDVEIKGATQQVEVQIKKLYCVSRA 196 (435)
Q Consensus 161 siV~V~G-~v~~~~~~~~~~t~~lEi~v~~i~vls~~ 196 (435)
++..|.+ .|+...+.-......+||....-..+.+|
T Consensus 249 ~VY~Is~~~Vk~an~~y~~~~~~yei~f~~~T~I~~~ 285 (608)
T TIGR00617 249 KVYYISKGSLKPANKQFTNLGNDYEMTLDRDTVIEEC 285 (608)
T ss_pred CEEEECceEEEEccccccCCCCCEEEEECCCeEEEEC
Confidence 9999965 45433222222335699999887777766
No 143
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=90.93 E-value=1.2 Score=49.79 Aligned_cols=67 Identities=16% Similarity=0.138 Sum_probs=50.8
Q ss_pred ccCCCCCCEEEEEEEEeeeecC--CCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHH-HhcCCCCcEEEEEEEEec
Q 013865 98 LNGSLKDQEVLIRGRVHTTRPV--GNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRF-VRSLSNESIVDVIGVVSV 171 (435)
Q Consensus 98 l~~~~~g~~V~v~GrV~~~R~~--G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~-~~~l~~esiV~V~G~v~~ 171 (435)
+.+...|+.|+|.|.|.+.+.. |+++.-+.+.|+++.++++..... . .| .+.++.|+.+.|.|++..
T Consensus 53 i~~l~~g~~vtv~g~V~~~~~~~~~~~~~~v~l~D~tg~i~l~~F~~n---~----~~~~~~l~~G~~~~v~Gkv~~ 122 (681)
T PRK10917 53 IAELRPGEKVTVEGEVLSAEVVFGKRRRLTVTVSDGTGNLTLRFFNFN---Q----PYLKKQLKVGKRVAVYGKVKR 122 (681)
T ss_pred HHHCCCCCEEEEEEEEEEEEEccCCceEEEEEEEECCeEEEEEEEccC---c----HHHHhhCCCCCEEEEEEEEEe
Confidence 4444569999999999886433 446677888999999999988310 1 24 367999999999999975
No 144
>KOG1936 consensus Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=90.82 E-value=0.8 Score=47.87 Aligned_cols=101 Identities=14% Similarity=0.196 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccC------CCCCcceeEecc-CCC----ceeeccChHHHHhhhccCCC
Q 013865 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS------SEGGSAVFRLDY-KGQ----SACLAQSPQLHKQMSICGDF 314 (435)
Q Consensus 246 ~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~------~egga~~F~v~~-~~~----~~~L~~Spql~lq~~i~~g~ 314 (435)
.=+.+|..|.+.|.+-|..+|...|.||++---. .|..--.+-+.. -|. .+=|+++=-=|+-|==+..+
T Consensus 72 ~qm~lRe~if~~i~~vFkrhGa~~iDTPVFElkeiL~gKYGEdskLiYdlkDQGGEl~SLRYDLTVPfARylAmNki~si 151 (518)
T KOG1936|consen 72 EQMALREKIFSTIKEVFKRHGAETIDTPVFELKEILTGKYGEDSKLIYDLKDQGGELCSLRYDLTVPFARYLAMNKITSI 151 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCeeccccchhHHHHHhhhcccccceeEehhhcCCcEEEeecccccHHHHHHHHcccccc
Confidence 4567899999999999999999999999863211 111101222211 122 23344544445443212223
Q ss_pred ceeEEEecceecCC-CCCCccccccccceeeeec
Q 013865 315 GRVFETGPVFRAED-SYTHRHLCEFTGLDVEMEI 347 (435)
Q Consensus 315 ~rVfeIgp~FR~E~-s~t~rHl~EFt~lE~e~a~ 347 (435)
+-|.|+++||-.. ..|.--.-||.||||-+|.
T Consensus 152 -kRy~iAkVyRRd~P~mtrGR~REFYQcDFDIAG 184 (518)
T KOG1936|consen 152 -KRYHIAKVYRRDQPAMTRGRYREFYQCDFDIAG 184 (518)
T ss_pred -eeeeEEEEEeccCchhhchhhhhhhccCccccc
Confidence 5599999999875 3455567899999999887
No 145
>PF08661 Rep_fac-A_3: Replication factor A protein 3; InterPro: IPR013970 Replication factor A is involved in eukaryotic DNA replication, recombination and repair. ; PDB: 2PI2_H 1L1O_D 3KDF_A 2Z6K_D 1QUQ_D 2PQA_D.
Probab=89.78 E-value=1.9 Score=36.57 Aligned_cols=57 Identities=21% Similarity=0.242 Sum_probs=37.7
Q ss_pred CCCCCEEEEEEEEeeeecCCCceEEEEEE-eCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecC
Q 013865 101 SLKDQEVLIRGRVHTTRPVGNKLAFVVVR-ERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVP 172 (435)
Q Consensus 101 ~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lr-d~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~ 172 (435)
.+.|+.|+|-|+|.+....| + . +.++ .+++.|+|.+... ..+..+.+|.|.|+|...
T Consensus 15 ~~~gk~VrivGkv~~~~~~g-~-~-~~l~~~d~~~V~v~l~~~------------~~~~~~~~vEviG~V~~~ 72 (109)
T PF08661_consen 15 QFVGKTVRIVGKVESVDPDG-G-S-ATLSTSDGGQVTVSLNPP------------SDEELSKYVEVIGKVNDD 72 (109)
T ss_dssp GGTTSEEEEEEEEEEE-TTS-S-E-EEEE-TTS-EEEEEESS--------------SS---SEEEEEEEE-TT
T ss_pred hhCCCeEEEEEEEeeEcCCC-C-E-EEEEcCCCCEEEEEeCCC------------CCCCCCCEEEEEEEEcCC
Confidence 57899999999999999777 3 3 3455 3566888877632 134568899999999653
No 146
>cd04488 RecG_wedge_OBF RecG_wedge_OBF: A subfamily of OB folds corresponding to the OB fold found in the N-terminal (wedge) domain of Escherichia coli RecG. RecG is a branched-DNA-specific helicase, which catalyzes the interconversion of a DNA replication fork to a four-stranded (Holliday) junction in vivo and in vitro. This interconversion provides a route to repair stalled forks. The RecG monomer contains three domains. The N-terminal domain is named for its wedge structure, and may provide the specificity of RecG for binding branched-DNA structures. During the reversal of fork to Holliday junction, the wedge domain is fixed at the junction of the fork where the leading and lagging strand duplex arms meet, and is thought to promote the unwinding of the nascent leading and lagging strands. In order to form the Holliday junction, these nascent strands would be annealed, and the parental strands reannealed. The wedge domain may also be a processivity factor of RecG on these branched cha
Probab=89.65 E-value=4.4 Score=30.58 Aligned_cols=56 Identities=18% Similarity=0.168 Sum_probs=39.2
Q ss_pred EEEEEeeeec--C-CCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEec
Q 013865 109 IRGRVHTTRP--V-GNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSV 171 (435)
Q Consensus 109 v~GrV~~~R~--~-G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~ 171 (435)
|.|+|.+.+. . |++..-+.+.|+++.|.++.... .. .....++.|+.+.|.|.+..
T Consensus 2 i~~~V~~~~~~~~~~~~~~~~~~~D~~g~i~~~~F~~----~~---~~~~~~~~G~~~~v~Gkv~~ 60 (75)
T cd04488 2 VEGTVVSVEVVPRRGRRRLKVTLSDGTGTLTLVFFNF----QP---YLKKQLPPGTRVRVSGKVKR 60 (75)
T ss_pred EEEEEEEEEeccCCCccEEEEEEEcCCCEEEEEEECC----CH---HHHhcCCCCCEEEEEEEEee
Confidence 5666655432 1 34566778899999999998742 11 11357999999999999965
No 147
>COG4085 Predicted RNA-binding protein, contains TRAM domain [General function prediction only]
Probab=89.59 E-value=1.7 Score=40.70 Aligned_cols=67 Identities=21% Similarity=0.385 Sum_probs=51.4
Q ss_pred CCCCCEEEEEEEEeeee-cCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHH---HhcCCCCcEEEEEEEEec
Q 013865 101 SLKDQEVLIRGRVHTTR-PVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRF---VRSLSNESIVDVIGVVSV 171 (435)
Q Consensus 101 ~~~g~~V~v~GrV~~~R-~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~---~~~l~~esiV~V~G~v~~ 171 (435)
-...+.|+|.|-|.+.+ ..|..+.|+.|.|++++|-+++..+. .+.... ..-+..|.+|.|+|.+..
T Consensus 48 G~l~e~v~vkg~V~~~~n~~~~gi~~l~lndgtGti~vva~~~t----ee~l~~n~~~p~~~eGe~veVtGrv~~ 118 (204)
T COG4085 48 GRLNEEVTVKGEVTADQNAIGGGIESLVLNDGTGTITVVASRST----EETLELNEGMPVTVEGEIVEVTGRVEE 118 (204)
T ss_pred ceeeccceeeeEEEeeecccccceEEEEEECCCCcEEEEEecCh----hHhHhhcCCCCccccCcEEEEEEEEEE
Confidence 35567889999999998 55668899999999999999998653 232221 113669999999998864
No 148
>PRK07459 single-stranded DNA-binding protein; Provisional
Probab=89.43 E-value=9.4 Score=33.17 Aligned_cols=85 Identities=12% Similarity=0.139 Sum_probs=50.8
Q ss_pred EEEEEEEEee---eec--CCCceEEEEEE-------eCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCC
Q 013865 106 EVLIRGRVHT---TRP--VGNKLAFVVVR-------ERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPD 173 (435)
Q Consensus 106 ~V~v~GrV~~---~R~--~G~kl~Fl~Lr-------d~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~ 173 (435)
.|.|.|||-+ +|. .|..++-+.|- +.+.-+.|++-.+ ......+.|.+|+.|.|+|.+....
T Consensus 5 ~v~LiGrL~~DPelr~t~~G~~v~~fslAv~~~~~~~~t~w~~v~~wg~------~Ae~~~~~l~KG~~V~V~G~l~~~~ 78 (121)
T PRK07459 5 SVTLVGRAGRDPEVRYFESGSVVCNLTLAVNRRSRDDEPDWFNLEIWGK------TAQVAADYVKKGSLIGITGSLKFDR 78 (121)
T ss_pred EEEEEEEccCCCEEEEcCCCCEEEEEEEEecccccCCCceEEEEEEehH------HHHHHHHHcCCCCEEEEEEEEEecc
Confidence 4666666665 332 33333333332 2244577777632 1122456799999999999997543
Q ss_pred cc-cC-CCc-eeEEEEEeEEEEeecC
Q 013865 174 VE-IK-GAT-QQVEVQIKKLYCVSRA 196 (435)
Q Consensus 174 ~~-~~-~~t-~~lEi~v~~i~vls~~ 196 (435)
-. .. |.+ ..+||.+.+|.+|++.
T Consensus 79 ~~d~d~G~~r~~~ei~a~~i~~L~~k 104 (121)
T PRK07459 79 WTDRNTGEDRSKPVIRVDRLELLGSK 104 (121)
T ss_pred eEcCCCCeEEEEEEEEEeEEEECcCC
Confidence 22 22 333 3499999999999754
No 149
>PRK15491 replication factor A; Provisional
Probab=88.60 E-value=3 Score=43.34 Aligned_cols=90 Identities=16% Similarity=0.206 Sum_probs=63.8
Q ss_pred eEEeccccCCCCCCEEEEEEEEeee-------ecCC--CceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHH-hcCCCCc
Q 013865 92 WTVVGALNGSLKDQEVLIRGRVHTT-------RPVG--NKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFV-RSLSNES 161 (435)
Q Consensus 92 ~~~i~~l~~~~~g~~V~v~GrV~~~-------R~~G--~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~-~~l~~es 161 (435)
..+|++|.+. ...|+|.|||.++ |..| .+++=+.|-|.+++|.+++-... . -.+. ..|..|+
T Consensus 57 ~~kI~dL~~~--~~~v~i~arVl~~~~~R~f~r~dGs~g~v~~~~v~DeTG~ir~tlW~~~--a----~~~~~~~le~G~ 128 (374)
T PRK15491 57 TTKIADINES--SSNVNFTAKVVSIFEPKEFNRNDGTTGRVGNIIVADETGSIRLTLWDDL--A----DLIKTGDIEVGK 128 (374)
T ss_pred cccHHHCCCC--CCceEEEEEEeeccCCeeeecCCCCceEEEEEEEEcCCCeEEEEEECch--h----hhhccCCcCCCC
Confidence 3567777643 3679999999986 3334 26666789999999999997431 1 1122 3599999
Q ss_pred EEEEEEEEecCCcccCCCceeEEEEEeEEEEeecC
Q 013865 162 IVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRA 196 (435)
Q Consensus 162 iV~V~G~v~~~~~~~~~~t~~lEi~v~~i~vls~~ 196 (435)
++.|.|.+.. +- +.+||.+.+-..+.+|
T Consensus 129 v~~I~~~~~~------~y-~g~Ei~i~~~~~i~~~ 156 (374)
T PRK15491 129 SLNISGYAKE------GY-SGIEVNIGRYGGISES 156 (374)
T ss_pred EEEEeeeecc------Cc-ccEEEEeCCCceeeec
Confidence 9999997432 11 2389999988888887
No 150
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=88.57 E-value=2 Score=45.49 Aligned_cols=76 Identities=14% Similarity=0.178 Sum_probs=57.5
Q ss_pred EEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCcccCCCceeEEE
Q 013865 106 EVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEV 185 (435)
Q Consensus 106 ~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~~~~~~t~~lEi 185 (435)
.|||.|=|.+.+...++=+|+.|.|....|-||+..+... ..+ -.+..|+-|.|.|.|..-+ ..|.+.|
T Consensus 19 ~v~V~GEisn~~~~~sGH~YFtLkD~~a~i~~vmf~~~~~----~l~--f~~~~G~~V~v~g~v~~y~-----~~G~~ql 87 (432)
T TIGR00237 19 QVWIQGEISNFTQPVSGHWYFTLKDENAQVRCVMFRGNNN----RLK--FRPQNGQQVLVRGGISVYE-----PRGDYQI 87 (432)
T ss_pred cEEEEEEecCCeeCCCceEEEEEEcCCcEEEEEEEcChhh----CCC--CCCCCCCEEEEEEEEEEEC-----CCCcEEE
Confidence 8999999999876433458899999999999999875321 011 2478999999999986421 1367999
Q ss_pred EEeEEEE
Q 013865 186 QIKKLYC 192 (435)
Q Consensus 186 ~v~~i~v 192 (435)
.|.+|.-
T Consensus 88 ~v~~i~~ 94 (432)
T TIGR00237 88 ICFEMQP 94 (432)
T ss_pred EEEEecc
Confidence 9999874
No 151
>KOG2509 consensus Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=88.36 E-value=0.91 Score=47.47 Aligned_cols=117 Identities=11% Similarity=0.159 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCC--------CCCcceeEeccCCCceeeccChHHHHhh-----hcc
Q 013865 245 QGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS--------EGGSAVFRLDYKGQSACLAQSPQLHKQM-----SIC 311 (435)
Q Consensus 245 ~~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~--------egga~~F~v~~~~~~~~L~~Spql~lq~-----~i~ 311 (435)
.....+..+++++.-+|+..+||+-+.||-|..... .+.-+.+.+---+.+.||.-..|.-+-. .+.
T Consensus 182 g~~a~LeqALi~yal~~l~~kGy~pl~~P~i~rkeVm~~cg~~~~~d~~~~y~ld~~~~~~LiaTaE~plAa~~~~e~~~ 261 (455)
T KOG2509|consen 182 GAGAFLEQALINYALDFLNAKGYTPLTTPDILRKEVMQKCGQLPRFDEEQYYVLDGGDEKYLIATAEQPLAAYHRDEWLE 261 (455)
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCccccCchhhhHHHHHHhccCcCCCcceEEeecCCccceeEeeccchhhhhhcccccc
Confidence 366777889999999999999999999999875431 1111112111112334554333322211 111
Q ss_pred C-CC-ceeEEEecceecCCCCC---Cc---cccccccceeeeeccccHHHHHHHHHHHHH
Q 013865 312 G-DF-GRVFETGPVFRAEDSYT---HR---HLCEFTGLDVEMEIKKHYSEVMDIVDRLFV 363 (435)
Q Consensus 312 ~-g~-~rVfeIgp~FR~E~s~t---~r---Hl~EFt~lE~e~a~~~~~~d~m~~~e~li~ 363 (435)
- .+ -|+--.+.|||+|-+.. .+ -.-+|+-+|.-. +. +-++--.+.|+|+.
T Consensus 262 ~~~lPiK~vg~S~CfR~EaGs~G~d~~GlyRVHqF~KVE~Fv-it-~Pe~S~~~~eEmi~ 319 (455)
T KOG2509|consen 262 EDQLPIKYVGVSRCFRAEAGSHGKDTKGLYRVHQFEKVEQFV-IT-GPEDSWEMLEEMIN 319 (455)
T ss_pred cccCceeeeehhHHHHHHhhhcccccccceeeeeeeeeEEEE-ec-CcchhHHHHHHHHH
Confidence 0 11 14556799999995222 22 123899998732 22 23444444444443
No 152
>cd04484 polC_OBF polC_OBF: A subfamily of OB folds corresponding to the N-terminal OB-fold nucleic acid binding domain of Bacillus subtilis type C replicative DNA polymerase III alpha subunit (polC). Replication in B. subtilis and Staphylococcus aureus requires two different polymerases, polC and DnaE. The holoenzyme is thought to include the two different polymerases. At the B. subtilis replication fork, polC appears to be involved in leading strand synthesis and DnaE in lagging strand synthesis.
Probab=88.19 E-value=12 Score=30.12 Aligned_cols=74 Identities=18% Similarity=0.253 Sum_probs=51.5
Q ss_pred EEEEEEEeeee----cCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCC-CCcEEEEEEEEecCCcccCCCce
Q 013865 107 VLIRGRVHTTR----PVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLS-NESIVDVIGVVSVPDVEIKGATQ 181 (435)
Q Consensus 107 V~v~GrV~~~R----~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~-~esiV~V~G~v~~~~~~~~~~t~ 181 (435)
|.|.|-|-.+- ..|+.+.-+.|.|.+.+|-|..... . . .+....|. .|+.|.|.|.+....- .+
T Consensus 2 v~i~G~Vf~~e~re~k~g~~i~~~~itD~t~Si~~K~F~~-~--~---~~~~~~ik~~G~~v~v~G~v~~D~f-----~~ 70 (82)
T cd04484 2 VVVEGEVFDLEIRELKSGRKILTFKVTDYTSSITVKKFLR-K--D---EKDKEELKSKGDWVRVRGKVQYDTF-----SK 70 (82)
T ss_pred EEEEEEEEEEEEEEecCCCEEEEEEEEcCCCCEEEEEecc-C--C---hhHHhhcccCCCEEEEEEEEEEccC-----CC
Confidence 77889987652 3565666688999998888887753 1 1 12236788 9999999999975421 24
Q ss_pred eEEEEEeEEE
Q 013865 182 QVEVQIKKLY 191 (435)
Q Consensus 182 ~lEi~v~~i~ 191 (435)
++.+.+..|.
T Consensus 71 e~~~~i~~i~ 80 (82)
T cd04484 71 ELVLMINDIE 80 (82)
T ss_pred ceEEEeeeEE
Confidence 6777776654
No 153
>PRK06863 single-stranded DNA-binding protein; Provisional
Probab=87.99 E-value=13 Score=34.43 Aligned_cols=57 Identities=16% Similarity=0.026 Sum_probs=39.2
Q ss_pred EEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCc-ccCCCc-eeEEEEEeEEEEeecC
Q 013865 134 TVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDV-EIKGAT-QQVEVQIKKLYCVSRA 196 (435)
Q Consensus 134 ~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~-~~~~~t-~~lEi~v~~i~vls~~ 196 (435)
-+.|++.. +....+...|++||.|.|+|.+....- ...|.+ ..++|.+.+|.+|+..
T Consensus 53 w~~Vv~fg------k~AE~v~~~LkKGs~V~VeGrL~~r~w~DkdG~~r~~~eI~a~~i~~L~~r 111 (168)
T PRK06863 53 WHRIVFYR------RQAEVAGEYLRKGSQVYVEGRLKTRKWQDQNGQDRYTTEIQGDVLQMLGGR 111 (168)
T ss_pred EEEEEEEh------HHHHHHHHHCCCCCEEEEEEEEEeCCccCCCCCEEEEEEEEEeEEEECCCC
Confidence 46676653 222345678999999999999975422 123444 3599999999998754
No 154
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=87.70 E-value=2.6 Score=44.49 Aligned_cols=77 Identities=13% Similarity=0.204 Sum_probs=59.2
Q ss_pred CCEEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEec-CCcccCCCcee
Q 013865 104 DQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSV-PDVEIKGATQQ 182 (435)
Q Consensus 104 g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~-~~~~~~~~t~~ 182 (435)
-..|||.|=|.+.+.++++=+|+.|.|....|-||+..+... +..-.+..|.-|.|.|.|.. ++ .|.
T Consensus 23 ~~~v~v~gEis~~~~~~sGH~Yf~Lkd~~a~i~~~~~~~~~~------~~~~~~~~G~~v~v~g~~~~y~~------~g~ 90 (438)
T PRK00286 23 LGQVWVRGEISNFTRHSSGHWYFTLKDEIAQIRCVMFKGSAR------RLKFKPEEGMKVLVRGKVSLYEP------RGD 90 (438)
T ss_pred CCcEEEEEEeCCCeeCCCCeEEEEEEcCCcEEEEEEEcChhh------cCCCCCCCCCEEEEEEEEEEECC------CCC
Confidence 468999999999876533458999999999999999875321 01124789999999999974 32 256
Q ss_pred EEEEEeEEEE
Q 013865 183 VEVQIKKLYC 192 (435)
Q Consensus 183 lEi~v~~i~v 192 (435)
+.|.|.+|..
T Consensus 91 ~ql~v~~i~~ 100 (438)
T PRK00286 91 YQLIVEEIEP 100 (438)
T ss_pred EEEEEEEeee
Confidence 9999999875
No 155
>PF12869 tRNA_anti-like: tRNA_anti-like; InterPro: IPR024422 The function of the proteins in this entry is not known, but they contain a novel variant of the nucleic acid-binding OB fold [].; PDB: 3F1Z_I.
Probab=87.58 E-value=2 Score=37.85 Aligned_cols=65 Identities=17% Similarity=0.208 Sum_probs=37.3
Q ss_pred CCCCCEEEEEEEEeeeecCCCceEEEEEEeC--CeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEe
Q 013865 101 SLKDQEVLIRGRVHTTRPVGNKLAFVVVRER--VSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVS 170 (435)
Q Consensus 101 ~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~--~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~ 170 (435)
...|+.|.|.|.|..++....+-.++...+. ...++|.+..+.. .......|..|+.|.|+|++.
T Consensus 64 kY~gK~i~vtG~V~~I~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~~~~~l~~G~~Vti~G~~~ 130 (144)
T PF12869_consen 64 KYKGKIIEVTGTVSSIDKGFGDNYVVLLGTENGFAGVQCYFSNDQE-----KRASVAKLKKGQKVTIKGICT 130 (144)
T ss_dssp HHTT-EEEEEEEEEEEEE-STT-EEEEEE-TT-S-S--EEEEEEGG-----GHHHHHH--TTSEEEEEEE--
T ss_pred hcCCCEEEEEEEEEEEEEcCCCcEEEEccCCCCceeEEEEEccchh-----hhhhHhcCCCCCEEEEEEEEE
Confidence 4679999999999999873324345555553 3468888875421 111234599999999999875
No 156
>PF00436 SSB: Single-strand binding protein family; InterPro: IPR000424 The Escherichia coli single-strand binding protein [] (gene ssb), also known as the helix-destabilising protein, is a protein of 177 amino acids. It binds tightly, as a homotetramer, to single-stranded DNA (ss-DNA) and plays an important role in DNA replication, recombination and repair. Closely related variants of SSB are encoded in the genome of a variety of large self-transmissible plasmids. SSB has also been characterised in bacteria such as Proteus mirabilis or Serratia marcescens. Eukaryotic mitochondrial proteins that bind ss-DNA and are probably involved in mitochondrial DNA replication are structurally and evolutionary related to prokaryotic SSB.; GO: 0003697 single-stranded DNA binding; PDB: 3UDG_B 1SE8_A 2CWA_A 3ULL_B 1S3O_A 2DUD_A 3AFP_A 3AFQ_A 3VDY_A 3EIV_C ....
Probab=87.20 E-value=13 Score=30.35 Aligned_cols=54 Identities=19% Similarity=0.117 Sum_probs=32.3
Q ss_pred EEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCccc-CCCc-eeEEEEEeEEEEe
Q 013865 134 TVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEI-KGAT-QQVEVQIKKLYCV 193 (435)
Q Consensus 134 ~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~~~-~~~t-~~lEi~v~~i~vl 193 (435)
-++|++-.. ..-.....+.+||.|.|.|.+....-.. .|.+ ..++|.+++|.+|
T Consensus 49 ~~~v~~~g~------~A~~~~~~l~kG~~V~V~G~l~~~~~~~~~G~~~~~~~i~a~~i~fl 104 (104)
T PF00436_consen 49 WINVVAWGK------LAENVAEYLKKGDRVYVEGRLRTRTYEDKDGQKRYRVEIIADNIEFL 104 (104)
T ss_dssp EEEEEEEHH------HHHHHHHH--TT-EEEEEEEEEEEEEESTTSSEEEEEEEEEEEEEE-
T ss_pred EEEEEeeee------cccccceEEcCCCEEEEEEEEEeeEEECCCCCEEEEEEEEEEEEEeC
Confidence 577777632 1223446699999999999987432222 2433 4599999999875
No 157
>PRK08486 single-stranded DNA-binding protein; Provisional
Probab=86.70 E-value=13 Score=34.66 Aligned_cols=44 Identities=14% Similarity=0.152 Sum_probs=32.6
Q ss_pred HHhcCCCCcEEEEEEEEecCCc-ccCCCc-eeEEEEEeEEEEeecC
Q 013865 153 FVRSLSNESIVDVIGVVSVPDV-EIKGAT-QQVEVQIKKLYCVSRA 196 (435)
Q Consensus 153 ~~~~l~~esiV~V~G~v~~~~~-~~~~~t-~~lEi~v~~i~vls~~ 196 (435)
+...|++|+.|.|+|.+....- ...+.+ -.+||.+.+|.+|++.
T Consensus 63 ~~~~l~KG~~V~VeGrL~~~~y~dkdG~~r~~~eI~a~~v~~L~~~ 108 (182)
T PRK08486 63 ANQYLSKGSKVLIEGRLTFESWMDQNGQKRSKHTITAESMQMLDSK 108 (182)
T ss_pred HHHHcCCCCEEEEEEEEEeCcEECCCCcEEEEEEEEEeEEEECCCC
Confidence 4567999999999999974321 223444 3499999999999765
No 158
>PRK07275 single-stranded DNA-binding protein; Provisional
Probab=85.93 E-value=16 Score=33.55 Aligned_cols=85 Identities=13% Similarity=0.223 Sum_probs=52.8
Q ss_pred EEEEEEEEee---eec--CCCceEEEEEE------e-----CCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEE
Q 013865 106 EVLIRGRVHT---TRP--VGNKLAFVVVR------E-----RVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVV 169 (435)
Q Consensus 106 ~V~v~GrV~~---~R~--~G~kl~Fl~Lr------d-----~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v 169 (435)
.|.|.|||.. +|- .|..++-+.|- + ...-|.|++-.+ .....++.|.+|+.|.|+|.+
T Consensus 4 ~v~LiGrL~~DPElr~t~sG~~v~~ftlAv~r~~~~~~ge~~tdfi~vv~wgk------~Ae~~~~~l~KG~~V~VeGrl 77 (162)
T PRK07275 4 NVVLVGRMTRDAELRYTPSNVAVATFTLAVNRTFKSQNGEREADFINCVIWRQ------QAENLANWAKKGALIGVTGRI 77 (162)
T ss_pred EEEEEEEECCCCeEEECCCCCEEEEEEEEEcCceecCCCCEeeeEEEEEEEcH------HHHHHHHHcCCCCEEEEEEEE
Confidence 4667777764 343 45444444442 1 124577777632 222345779999999999999
Q ss_pred ecCCc-ccCCCc-eeEEEEEeEEEEeecC
Q 013865 170 SVPDV-EIKGAT-QQVEVQIKKLYCVSRA 196 (435)
Q Consensus 170 ~~~~~-~~~~~t-~~lEi~v~~i~vls~~ 196 (435)
....- ...|.+ ..+||.+.+|.+|.+.
T Consensus 78 ~~r~y~dkdG~k~~~~evva~~i~~l~~~ 106 (162)
T PRK07275 78 QTRNYENQQGQRVYVTEVVADNFQMLESR 106 (162)
T ss_pred EeceEECCCCCEEEEEEEEEeEEEECCCC
Confidence 74321 123444 3499999999998754
No 159
>PF03590 AsnA: Aspartate-ammonia ligase; InterPro: IPR004618 Aspartate--ammonia ligase (asparagine synthetase) 6.3.1.1 from EC catalyses the conversion of L-aspartate to L-asparagine in the presence of ATP and ammonia. This family represents one of two non-homologous forms of aspartate--ammonia ligase found in Escherichia coli. This type is also found in Haemophilus influenzae, Treponema pallidum and Lactobacillus delbrueckii, but appears to have a very limited distribution. The fact that the protein from the H. influenzae is more than 70% identical to that from the spirochete T. pallidum, but less than 65% identical to that from the closely related E. coli, strongly suggests lateral transfer.; GO: 0004071 aspartate-ammonia ligase activity, 0006529 asparagine biosynthetic process, 0005737 cytoplasm; PDB: 11AS_B 12AS_A.
Probab=85.42 E-value=16 Score=35.56 Aligned_cols=118 Identities=14% Similarity=0.234 Sum_probs=68.2
Q ss_pred HHHHHHHHHhh-----cCCeEEeeCceeeccCCC-----CCcc---eeEeccC-CCceeeccChHHHHhhhcc-CCC---
Q 013865 253 QVGNIFRQFLL-----SENFVEIHTPKLIAGSSE-----GGSA---VFRLDYK-GQSACLAQSPQLHKQMSIC-GDF--- 314 (435)
Q Consensus 253 ~i~~~~r~fl~-----~~gF~EV~TP~l~~~~~e-----gga~---~F~v~~~-~~~~~L~~Spql~lq~~i~-~g~--- 314 (435)
..+..+.++|. ..+.+.|..|.+....++ .|.+ .|.+.-+ +..+-.-+|---||.+++. -||
T Consensus 8 ~aI~~iK~~F~~~L~~~LnL~rVsAPLfv~~~sGlNDnLnG~ErpVsF~~k~~~~~~~EIVhSLAKWKR~aL~~y~f~~g 87 (244)
T PF03590_consen 8 KAIKFIKDTFERELSKALNLTRVSAPLFVEKGSGLNDNLNGVERPVSFDIKDIPDETAEIVHSLAKWKRMALKRYGFPPG 87 (244)
T ss_dssp HHHHHHHHHHHHHHHHHC-EEE----SEEETTSS-S--TTST----EE--TTSTT--EEE-S--TTHHHHHHHHTT--TT
T ss_pred HHHHHHHHHHHHHHHHHhCceEecCCeEEecCCCCcCCCCCeEeeEEEEccCCCCceeeeehhHHHHHHHHHHHcCCCCC
Confidence 34555555554 469999999999865331 1333 3666555 6788888999999998874 244
Q ss_pred ceeEEEeccee-cCCCCCCccccccccceeeeeccccHHHHHHHHHHHHHHHHhhhhh
Q 013865 315 GRVFETGPVFR-AEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNN 371 (435)
Q Consensus 315 ~rVfeIgp~FR-~E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~ 371 (435)
+.+|+=..+.| .|..-+..|.-=.-|-|||+.+.. -+--++.+.+.+..|+..+..
T Consensus 88 eGlyTdMnAiR~~de~ld~~HSiYVDQWDWEkvI~~-~~Rnl~~Lk~tV~~Iy~aik~ 144 (244)
T PF03590_consen 88 EGLYTDMNAIRPDDEELDNIHSIYVDQWDWEKVISK-EDRNLEFLKETVRKIYKAIKE 144 (244)
T ss_dssp -EEEEEEEEE-TT-SS--SS--SEEEEEEEEEE--T-T--SHHHHHHHHHHHHHHHHH
T ss_pred ceEeecCceeecchhccCcceEEEecccCHhhhcCc-ccccHHHHHHHHHHHHHHHHH
Confidence 68999999999 887568899999999999999875 356677778888888777653
No 160
>PRK06461 single-stranded DNA-binding protein; Reviewed
Probab=84.92 E-value=13 Score=32.57 Aligned_cols=85 Identities=16% Similarity=0.171 Sum_probs=57.0
Q ss_pred eEEeccccCCCCCCEEEEEEEEeeee------cCCC--ceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEE
Q 013865 92 WTVVGALNGSLKDQEVLIRGRVHTTR------PVGN--KLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIV 163 (435)
Q Consensus 92 ~~~i~~l~~~~~g~~V~v~GrV~~~R------~~G~--kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV 163 (435)
..+|++|.+. ...|.+.|.|.++- ..|. .+.-+.|.|.+++|.+.+=.. . +..|..|++|
T Consensus 4 ~~kI~dL~~g--~~~v~~~~~V~~i~~~~~~~~k~~~~~v~~~~l~D~TG~I~~tlW~~-~---------a~~l~~GdvV 71 (129)
T PRK06461 4 ITKIKDLKPG--MERVNVTVRVLEVGEPKVIQTKGGPRTISEAVVGDETGRVKLTLWGE-Q---------AGSLKEGEVV 71 (129)
T ss_pred ceEHHHcCCC--CCceEEEEEEEEcCCceEEEeCCCceEEEEEEEECCCCEEEEEEeCC-c---------cccCCCCCEE
Confidence 4567777542 26789999998532 1232 366678889999999888532 1 2468899999
Q ss_pred EEE-EEEecCCcccCCCceeEEEEEeE---EEEeec
Q 013865 164 DVI-GVVSVPDVEIKGATQQVEVQIKK---LYCVSR 195 (435)
Q Consensus 164 ~V~-G~v~~~~~~~~~~t~~lEi~v~~---i~vls~ 195 (435)
.|. |.+..- .+.++|.+.+ |..+..
T Consensus 72 ~I~na~v~~f-------~G~lqL~i~~~~~i~~~~~ 100 (129)
T PRK06461 72 EIENAWTTLY-------RGKVQLNVGKYGSISESDD 100 (129)
T ss_pred EEECcEEeee-------CCEEEEEECCCEEEEECCc
Confidence 999 454421 2468899984 665554
No 161
>PRK06751 single-stranded DNA-binding protein; Provisional
Probab=84.86 E-value=19 Score=33.37 Aligned_cols=57 Identities=18% Similarity=0.214 Sum_probs=39.2
Q ss_pred EEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCcc-cCCCc-eeEEEEEeEEEEeecC
Q 013865 134 TVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVE-IKGAT-QQVEVQIKKLYCVSRA 196 (435)
Q Consensus 134 ~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~~-~~~~t-~~lEi~v~~i~vls~~ 196 (435)
-+-|++-.. ....+...|++|+.|.|+|.+....-. ..+.+ ..+||.+..|.+|.+.
T Consensus 48 wi~~v~wgk------~Ae~~~~~l~KG~~V~VeGrL~~r~yedkdG~~~~~~eVva~~i~~l~~r 106 (173)
T PRK06751 48 FINCVIWRK------QAENVANYLKKGSLAGVDGRLQTRNYEGQDGKRVYVTEVLAESVQFLEPR 106 (173)
T ss_pred EEEEEEeCc------HHHHHHHHcCCCCEEEEEEEEEeCccCCCCCcEEEEEEEEEEEEEeCcCC
Confidence 466776532 233456779999999999999754321 23444 3499999999998754
No 162
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=84.53 E-value=4.8 Score=44.64 Aligned_cols=66 Identities=17% Similarity=0.164 Sum_probs=48.6
Q ss_pred cccCCCCCCEEEEEEEEeeeec---CCCceEEEEEEe-CCeEEEEEEeeCCCCCcHHHHHHH-hcCCCCcEEEEEEEEec
Q 013865 97 ALNGSLKDQEVLIRGRVHTTRP---VGNKLAFVVVRE-RVSTVQCLATVKPDSVSKEMVRFV-RSLSNESIVDVIGVVSV 171 (435)
Q Consensus 97 ~l~~~~~g~~V~v~GrV~~~R~---~G~kl~Fl~Lrd-~~~~iQvv~~~~~~~~s~~~~k~~-~~l~~esiV~V~G~v~~ 171 (435)
.+.+-..|+.++|.|+|.+... .+.++.-+.+.| +++.+.++.... .|. +.++.|+.+.|.|++..
T Consensus 25 ~i~~~~~g~~~~~~~~v~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~F~~---------~~~~~~~~~g~~~~~~Gk~~~ 95 (630)
T TIGR00643 25 TIGELLPGERATIVGEVLSHCIFGFKRRKVLKLRLKDGGYKKLELRFFNR---------AFLKKKFKVGSKVVVYGKVKS 95 (630)
T ss_pred CHHHcCCCCEEEEEEEEEEeEeccCCCCceEEEEEEECCCCEEEEEEECC---------HHHHhhCCCCCEEEEEEEEEe
Confidence 3444466999999999875321 223456678899 999999998832 133 57999999999999974
No 163
>PRK02801 primosomal replication protein N; Provisional
Probab=83.95 E-value=24 Score=29.55 Aligned_cols=52 Identities=12% Similarity=0.238 Sum_probs=33.7
Q ss_pred EEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCcccCCCceeEEEEEeEEEEe
Q 013865 134 TVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCV 193 (435)
Q Consensus 134 ~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~~~~~~t~~lEi~v~~i~vl 193 (435)
.|+|++-.+ ......+.+.+|+.|.|+|.+..- +...|.+ .+.|+++.|..+
T Consensus 49 ~i~~va~G~------~Ae~~~~~l~kGs~v~V~G~L~~~-~~~~g~~-~~~v~~~~i~~l 100 (101)
T PRK02801 49 RMPVIVSGN------QFQAITQSITVGSKITVQGFISCH-QGRNGLS-KLVLHAEQIELI 100 (101)
T ss_pred EEEEEEEcH------HHHHHHhhcCCCCEEEEEEEEEEe-ECCCCCE-EEEEEEEEEEEC
Confidence 388887632 222334579999999999999751 2222322 255998888765
No 164
>PRK06293 single-stranded DNA-binding protein; Provisional
Probab=83.81 E-value=29 Score=31.87 Aligned_cols=58 Identities=16% Similarity=0.129 Sum_probs=38.4
Q ss_pred eEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCc-ccCCCc-eeEEEEEeEEEEeecC
Q 013865 133 STVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDV-EIKGAT-QQVEVQIKKLYCVSRA 196 (435)
Q Consensus 133 ~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~-~~~~~t-~~lEi~v~~i~vls~~ 196 (435)
.-+.|++-.+ ......+.|++|+.|.|+|.+....- .+.|.+ ..++|.+..|.+|+-.
T Consensus 43 ~wi~v~awg~------~Ae~v~~yL~KG~~V~VeGrL~~~~y~dkdG~kr~~~eIva~~I~fl~~~ 102 (161)
T PRK06293 43 VWCRCNIWGN------RYDKMLPYLKKGSGVIVAGEMSPESYVDKDGSPQSSLVVSVDTIKFSPFG 102 (161)
T ss_pred EEEEEEEEhH------HHHHHHHhCCCCCEEEEEEEEEeCccCCCCCCEEEEEEEEEeEEEECcCC
Confidence 3466666532 11234567999999999999974321 233444 3499999999998644
No 165
>PRK07274 single-stranded DNA-binding protein; Provisional
Probab=83.72 E-value=30 Score=30.39 Aligned_cols=44 Identities=18% Similarity=0.209 Sum_probs=32.8
Q ss_pred HHhcCCCCcEEEEEEEEecCCcccCCCc-eeEEEEEeEEEEeecC
Q 013865 153 FVRSLSNESIVDVIGVVSVPDVEIKGAT-QQVEVQIKKLYCVSRA 196 (435)
Q Consensus 153 ~~~~l~~esiV~V~G~v~~~~~~~~~~t-~~lEi~v~~i~vls~~ 196 (435)
..+.|.+||.|.|+|.+....-...|.+ ..+||.+.++.+|.+.
T Consensus 61 v~~~l~KG~~V~V~Grl~~~~y~kdG~~~~~~eviv~~i~~l~~k 105 (131)
T PRK07274 61 LASYASKGSLISIDGELRTRKYEKDGQTHYVTEVLCQSFQLLESR 105 (131)
T ss_pred HHHHcCCCCEEEEEEEEEeccCccCCcEEEEEEEEEEEEEECcCC
Confidence 4567999999999999975433333444 3489999999998643
No 166
>PRK14699 replication factor A; Provisional
Probab=83.18 E-value=8.2 Score=41.53 Aligned_cols=88 Identities=13% Similarity=0.190 Sum_probs=59.0
Q ss_pred EEeccccCCCCCCEEEEEEEEeee-------ecCCC--ceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHh--cCCCCc
Q 013865 93 TVVGALNGSLKDQEVLIRGRVHTT-------RPVGN--KLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVR--SLSNES 161 (435)
Q Consensus 93 ~~i~~l~~~~~g~~V~v~GrV~~~-------R~~G~--kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~--~l~~es 161 (435)
.+|++|.+ .+..|+|.|||.++ |..|. +++=+.|-|.+++|-+++=... ...+. .|..||
T Consensus 58 ~kI~di~~--~~~~v~i~~rVl~i~~~r~f~r~dG~~g~v~~~~iaDeTG~ir~tlW~~~-------a~~~~~g~l~~GD 128 (484)
T PRK14699 58 VKIENITP--ESGPVNFIARVVSVFDTKEFTRNDGTIGRVGNLIVGDETGKIKLTLWDNM-------ADLIKAGKIKAGQ 128 (484)
T ss_pred ccHhHccC--CCceEEEEEEEEEecCceEEecCCCCceEEEEEEEecCCCeEEEEEecCc-------cchhhhcCCCCCC
Confidence 46777754 35789999999997 34443 5666688899999999985321 11222 599999
Q ss_pred EEEEEEEEecCCcccCCCceeEEEEEeEEEEeecC
Q 013865 162 IVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRA 196 (435)
Q Consensus 162 iV~V~G~v~~~~~~~~~~t~~lEi~v~~i~vls~~ 196 (435)
+|.|.|.++. . - +.+||.+....++.++
T Consensus 129 vv~I~~~~r~-~-----~-~g~el~~~~~~~i~~~ 156 (484)
T PRK14699 129 TLQISGYAKQ-G-----Y-SGVEVNIGNNGVLTES 156 (484)
T ss_pred EEEEcceecc-C-----C-CCceEEeCCCceeecc
Confidence 9999996432 2 1 2367777665555554
No 167
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=82.82 E-value=13 Score=41.36 Aligned_cols=83 Identities=16% Similarity=0.112 Sum_probs=59.2
Q ss_pred cccCCCCCCEEEEEEEEeee--e-cCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHH-hcCCCCcEEEEEEEEecC
Q 013865 97 ALNGSLKDQEVLIRGRVHTT--R-PVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFV-RSLSNESIVDVIGVVSVP 172 (435)
Q Consensus 97 ~l~~~~~g~~V~v~GrV~~~--R-~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~-~~l~~esiV~V~G~v~~~ 172 (435)
.+.+...|..|+|.|.|.+. + ..++++.=+.+.|+++.|=+++.... . |+ +.++.|..|.|.|.+..-
T Consensus 53 ~i~~~~~g~~vti~g~V~~~~~~~~~~~~~l~v~~~d~~~~l~l~fFn~~----~----~l~~~~~~G~~v~v~Gk~~~~ 124 (677)
T COG1200 53 GIAEARPGEIVTIEGTVLSHEKFPFGKRKLLKVTLSDGTGVLTLVFFNFP----A----YLKKKLKVGERVIVYGKVKRF 124 (677)
T ss_pred ChhhcCCCceEEEEEEEEeeeccCCCCCceEEEEEecCcEEEEEEEECcc----H----HHHhhCCCCCEEEEEEEEeec
Confidence 34455679999999999664 4 33556566788899999999887432 1 33 579999999999999752
Q ss_pred CcccCCCceeEEEEEeEEEEee
Q 013865 173 DVEIKGATQQVEVQIKKLYCVS 194 (435)
Q Consensus 173 ~~~~~~~t~~lEi~v~~i~vls 194 (435)
.+..++.--++.+++
T Consensus 125 -------~~~~~~~hpe~~~~~ 139 (677)
T COG1200 125 -------KGGLQITHPEYIVND 139 (677)
T ss_pred -------cCceEEEcceEEecC
Confidence 234666666666654
No 168
>PRK06752 single-stranded DNA-binding protein; Validated
Probab=82.42 E-value=30 Score=29.42 Aligned_cols=57 Identities=18% Similarity=0.281 Sum_probs=38.5
Q ss_pred EEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCc-ccCCCc-eeEEEEEeEEEEeecC
Q 013865 134 TVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDV-EIKGAT-QQVEVQIKKLYCVSRA 196 (435)
Q Consensus 134 ~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~-~~~~~t-~~lEi~v~~i~vls~~ 196 (435)
-+-|++-.. ....+...+.+||.|.|+|.+....- ...|.+ ..+||.+.+|.+|++.
T Consensus 48 ~~~v~~wg~------~Ae~~~~~l~KG~~V~V~G~l~~~~~~~~~G~~~~~~ei~a~~i~~l~~~ 106 (112)
T PRK06752 48 FINCVVWRK------SAENVTEYCTKGSLVGITGRIHTRNYEDDQGKRIYITEVVIESITFLERR 106 (112)
T ss_pred EEEEEEehH------HHHHHHHhcCCCCEEEEEEEEEeCccCCCCCcEEEEEEEEEEEEEECCCC
Confidence 456666532 22234567999999999999975432 223444 3599999999998754
No 169
>KOG3108 consensus Single-stranded DNA-binding replication protein A (RPA), medium (30 kD) subunit [Replication, recombination and repair]
Probab=82.36 E-value=7.9 Score=38.36 Aligned_cols=75 Identities=15% Similarity=0.150 Sum_probs=53.3
Q ss_pred CEEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCcccCCCceeEE
Q 013865 105 QEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVE 184 (435)
Q Consensus 105 ~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~~~~~~t~~lE 184 (435)
..|++-|||.++-.+..+ .+|+|-|+++.|=|..=......+. ....|..|..|.|.|.++.+. |..+
T Consensus 69 ~~v~~VGivr~~e~~~t~-i~y~I~D~tg~id~r~W~~~~~~~~----e~~~l~~~~yVkv~G~Lk~f~-------Gk~s 136 (265)
T KOG3108|consen 69 SAVSIVGIVRNIEKSATN-ITYEIEDGTGQIDVRQWFHDNAESE----EMPALETGTYVKVYGHLKPFQ-------GKKS 136 (265)
T ss_pred EEEEEEEEEEeceecCcc-eEEEEecCcccEEEEEeccccchhh----hCcccccCcEEEeeecccCCC-------Ccee
Confidence 368899999999988766 6789999999876665433222222 235899999999999997543 3345
Q ss_pred EEEeEEE
Q 013865 185 VQIKKLY 191 (435)
Q Consensus 185 i~v~~i~ 191 (435)
|.+.+|.
T Consensus 137 l~~fkI~ 143 (265)
T KOG3108|consen 137 LQVFKIR 143 (265)
T ss_pred EEEEeee
Confidence 5555543
No 170
>COG5235 RFA2 Single-stranded DNA-binding replication protein A (RPA), medium (30 kD) subunit [DNA replication, recombination, and repair]
Probab=82.13 E-value=9.7 Score=36.32 Aligned_cols=61 Identities=13% Similarity=0.182 Sum_probs=47.0
Q ss_pred EEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEec
Q 013865 106 EVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSV 171 (435)
Q Consensus 106 ~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~ 171 (435)
.|.+-|||.++..+-.+ .|++|.||++.|-|-.=.... . ....++.+.-+-.|.|.|.++.
T Consensus 68 ~V~fVGvvrni~~~ttn-~~~~iEDGTG~Ievr~W~~~~---~-~~e~~~d~~~~~yvkV~G~lk~ 128 (258)
T COG5235 68 NVQFVGVVRNIKTSTTN-SMFVIEDGTGSIEVRFWPGNS---Y-EEEQCKDLEEQNYVKVNGSLKT 128 (258)
T ss_pred eEEEEEEEEeeeecccc-eEEEEecCCceEEEEecCCCc---h-HHHhccccccccEEEEecceee
Confidence 58899999999998755 789999999999988654322 1 1234566778889999998863
No 171
>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]
Probab=81.93 E-value=4.1 Score=47.90 Aligned_cols=119 Identities=13% Similarity=0.073 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEeeCceeecc-CCCC-CcceeEe-ccCCC----ceeeccChHHHHhhhccCCCceeE
Q 013865 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAG-SSEG-GSAVFRL-DYKGQ----SACLAQSPQLHKQMSICGDFGRVF 318 (435)
Q Consensus 246 ~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~-~~eg-ga~~F~v-~~~~~----~~~L~~Spql~lq~~i~~g~~rVf 318 (435)
..-.+|+.++..+-+-|..+|++|++||-+... +|-. ..++..+ +.-|. ++=||+---=|.-+=-+ -.-|-|
T Consensus 930 ~~~~l~~~v~e~~~~ifr~Hga~~l~tpp~~~~~~~~~~~~~~v~~ld~sG~~v~Lp~DLr~pfar~vs~N~~-~~~Kry 1008 (1351)
T KOG1035|consen 930 INNELREYVVEEVVKIFRKHGAIELETPPLSLRNACAYFSRKAVELLDHSGDVVELPYDLRLPFARYVSRNSV-LSFKRY 1008 (1351)
T ss_pred hHHHHHHHHHHHHHHHHHHhcceeccCCccccccccchhccceeeeecCCCCEEEeeccccchHHHHhhhchH-HHHHHh
Confidence 344567889999999999999999999976532 2221 1223222 22222 22233222222211001 123569
Q ss_pred EEecceecCCCCCCccccccccceeeeeccc-c--HHHHHHHHHHHHHHHHhh
Q 013865 319 ETGPVFRAEDSYTHRHLCEFTGLDVEMEIKK-H--YSEVMDIVDRLFVTIFDG 368 (435)
Q Consensus 319 eIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~-~--~~d~m~~~e~li~~i~~~ 368 (435)
+|++|||-+.+ + |--||+.|+|-+-.-. + --|++.++-+++..++.+
T Consensus 1009 ~i~rVyr~~~~--~-hP~~~~ec~fDii~~t~sl~~AE~L~vi~Ei~~~~l~~ 1058 (1351)
T KOG1035|consen 1009 CISRVYRPAIH--N-HPKECLECDFDIIGPTTSLTEAELLKVIVEITTEILHE 1058 (1351)
T ss_pred hhheeeccccc--C-CCccccceeeeEecCCCCccHHHHHHHHHHHHHHHhcc
Confidence 99999998883 3 8889999999754321 1 246777787777776554
No 172
>PRK13732 single-stranded DNA-binding protein; Provisional
Probab=81.93 E-value=32 Score=31.99 Aligned_cols=44 Identities=23% Similarity=0.209 Sum_probs=32.3
Q ss_pred HHhcCCCCcEEEEEEEEecCCcccCCCc-eeEEEEEe---EEEEeecC
Q 013865 153 FVRSLSNESIVDVIGVVSVPDVEIKGAT-QQVEVQIK---KLYCVSRA 196 (435)
Q Consensus 153 ~~~~l~~esiV~V~G~v~~~~~~~~~~t-~~lEi~v~---~i~vls~~ 196 (435)
....|.+||.|.|+|.+....-...|.+ ..+||.+. +|.+|++.
T Consensus 68 v~~~L~KG~~V~VeGrL~~r~ye~dG~kr~~~eIiv~~~g~~~fL~~~ 115 (175)
T PRK13732 68 AGEYLRKGAQVYIEGQLRTRSWEDNGITRYVTEILVKTTGTMQMLGRA 115 (175)
T ss_pred HHHhcCCCCEEEEEEEEEeeeEccCCeEEEEEEEEEeecCeEEEecCC
Confidence 4567999999999999874322223444 34899998 89999765
No 173
>PRK13480 3'-5' exoribonuclease YhaM; Provisional
Probab=81.83 E-value=14 Score=37.47 Aligned_cols=79 Identities=10% Similarity=0.112 Sum_probs=54.7
Q ss_pred CCEEEEEEEEeeee----cCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCcccCCC
Q 013865 104 DQEVLIRGRVHTTR----PVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGA 179 (435)
Q Consensus 104 g~~V~v~GrV~~~R----~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~~~~~~ 179 (435)
|+.|..-.-|.++. +.|+.-..+.|.|.+++|.+.+=.. +. .....+..|++|.|.|.+..-
T Consensus 11 g~~v~~~~lv~~~~~~~~knG~~yl~l~l~D~tG~I~ak~W~~----~~---~~~~~~~~g~vv~v~G~v~~y------- 76 (314)
T PRK13480 11 GEQVDHFLLIKSATKGVASNGKPFLTLILQDKSGDIEAKLWDV----SP---EDEATYVPETIVHVKGDIINY------- 76 (314)
T ss_pred CCEeeEEEEEEEceeeecCCCCeEEEEEEEcCCcEEEEEeCCC----Ch---hhHhhcCCCCEEEEEEEEEEE-------
Confidence 56665555555543 3365555677889999999998532 11 234679999999999998642
Q ss_pred ceeEEEEEeEEEEeecC
Q 013865 180 TQQVEVQIKKLYCVSRA 196 (435)
Q Consensus 180 t~~lEi~v~~i~vls~~ 196 (435)
.|.+.|.+..|..+.+.
T Consensus 77 ~g~~Ql~i~~i~~~~~~ 93 (314)
T PRK13480 77 RGRKQLKVNQIRLATEE 93 (314)
T ss_pred CCcceEEEEEeEECCCC
Confidence 14577889999888764
No 174
>TIGR00621 ssb single stranded DNA-binding protein (ssb). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=81.70 E-value=35 Score=31.14 Aligned_cols=58 Identities=14% Similarity=0.059 Sum_probs=38.1
Q ss_pred eEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCcc-cCCCc-eeEEEEEeEEEEeecC
Q 013865 133 STVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVE-IKGAT-QQVEVQIKKLYCVSRA 196 (435)
Q Consensus 133 ~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~~-~~~~t-~~lEi~v~~i~vls~~ 196 (435)
.-+-|++-. +....+...|.+|+.|.|+|.+....-. ..+.+ ..++|.+++|..|...
T Consensus 51 ~~~~v~~wg------~~Ae~~~~~l~KG~~V~V~G~L~~~~~~~kdG~~~~~~ev~a~~i~~L~~~ 110 (164)
T TIGR00621 51 EWHDIVIFG------RLAEVAAQYLKKGSLVYVEGRLRTRKWEDQNGQKRSKTEIIADNVQLLDLL 110 (164)
T ss_pred eEEEEEEeh------HHHHHHHHhCCCCCEEEEEEEEEeceEECCCCcEEEEEEEEEEEEeecccc
Confidence 356666542 2222355689999999999999753221 13444 3499999999887653
No 175
>PRK12366 replication factor A; Reviewed
Probab=81.62 E-value=7.8 Score=43.13 Aligned_cols=94 Identities=11% Similarity=0.081 Sum_probs=62.3
Q ss_pred ceEEeccccCCCCCCEEEEEEEEeeee---------cCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCc
Q 013865 91 EWTVVGALNGSLKDQEVLIRGRVHTTR---------PVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNES 161 (435)
Q Consensus 91 ~~~~i~~l~~~~~g~~V~v~GrV~~~R---------~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~es 161 (435)
...+|.+|.+-..|..++|+|||.++- ..| ++.=+.|.|+++.|.+++-... . -+| ..|..|+
T Consensus 278 ~~~pI~~L~~~~~g~~~~I~grV~~~~~~R~f~~~~g~g-kv~s~~l~D~tG~IR~t~w~~~--~----d~~-~~l~~G~ 349 (637)
T PRK12366 278 EIVNIEELTEFEDGEEVDVKGRIIAISDKREVERDDRTA-EVQDIELADGTGRVRVSFWGEK--A----KIL-ENLKEGD 349 (637)
T ss_pred CceeHHHCCcccCCCEEEEEEEEEecCCceEEEcCCCcE-EEEEEEEEcCCCeEEEEEeCch--h----hhh-cccCCCC
Confidence 345677776543688999999998862 235 7788899999999999997431 1 122 3468999
Q ss_pred EEEEEEEEecCCcccCCCceeEEEEEeEEEEe
Q 013865 162 IVDVIGVVSVPDVEIKGATQQVEVQIKKLYCV 193 (435)
Q Consensus 162 iV~V~G~v~~~~~~~~~~t~~lEi~v~~i~vl 193 (435)
++.|.|-..+.-... ...+++||.+..-..+
T Consensus 350 vy~is~~~vk~y~~~-~~~~~~El~~~~~s~I 380 (637)
T PRK12366 350 AVKIENCKVRTYYDN-EGEKRVDLNAGYSSEI 380 (637)
T ss_pred EEEEecCEEeecccc-CCCcCEEEEcCCceEE
Confidence 999997554411110 1124588888654433
No 176
>PRK07135 dnaE DNA polymerase III DnaE; Validated
Probab=80.80 E-value=7.3 Score=45.38 Aligned_cols=62 Identities=10% Similarity=0.102 Sum_probs=49.7
Q ss_pred CCCEEEEEEEEeeeec---CCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEec
Q 013865 103 KDQEVLIRGRVHTTRP---VGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSV 171 (435)
Q Consensus 103 ~g~~V~v~GrV~~~R~---~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~ 171 (435)
.++.|+|.|.|.++|. .|+.|+|+.|.|.++.+.+++..+ .++....+..++++.|+|....
T Consensus 896 ~~~~~~v~g~i~~~~~~~K~g~~maf~~~eD~~~~~e~~~F~~-------~~~~~~~l~~~~~~~~~~~~~~ 960 (973)
T PRK07135 896 INTEYRLAIEVKNVKRLRKANKEYKKVILSDDSVEITIFVNDN-------DYLLFETLKKGDIYEFLISKSK 960 (973)
T ss_pred CCCeEEEEEEEEEEEEEeeCCCeEEEEEEEECCCcEEEEEcHH-------HHHHHHHhhcCCEEEEEEEEcC
Confidence 4778999999998654 477899999999999999999843 2333345888999999998754
No 177
>PRK07211 replication factor A; Reviewed
Probab=79.90 E-value=16 Score=39.35 Aligned_cols=81 Identities=17% Similarity=0.190 Sum_probs=57.7
Q ss_pred EEeccccCCCCCCEEEEEEEEeeeec-----------CCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCc
Q 013865 93 TVVGALNGSLKDQEVLIRGRVHTTRP-----------VGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNES 161 (435)
Q Consensus 93 ~~i~~l~~~~~g~~V~v~GrV~~~R~-----------~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~es 161 (435)
.+|.+|.+. ...|+|.|||.++-. .| +++=++|-|.++.|.+++-.. ...++...|..|+
T Consensus 54 ~~I~dL~pg--~~~vtI~aRV~~~~~~Rt~~~~~~~~eG-kv~~v~l~DeTG~Ir~TlW~d------~ad~~~~~Le~Gd 124 (485)
T PRK07211 54 NGIADIEPG--MDEVKFLAKVLSIGDLRTFERDGEDEDG-RVINVEVADETGSVRVAFWDE------QAVAAEEELEVGQ 124 (485)
T ss_pred ccHhhCCCC--CCceEEEEEEeEccCceEEEeCCCCCCc-EEEEEEEEcCCCeEEEEEech------HhHhhhcccCCCC
Confidence 356667542 256899999877522 34 888899999999999999742 2234667899999
Q ss_pred EEEEEEEEecCCcccCCCceeEEEEEeE
Q 013865 162 IVDVIGVVSVPDVEIKGATQQVEVQIKK 189 (435)
Q Consensus 162 iV~V~G~v~~~~~~~~~~t~~lEi~v~~ 189 (435)
++.|.|.++. . -..+||.+..
T Consensus 125 V~~I~~~~~~------~-ys~~El~i~~ 145 (485)
T PRK07211 125 VLRIKGRPKD------G-YNGLEVSVDK 145 (485)
T ss_pred EEEEeceEec------c-ccceEEEEee
Confidence 9999987642 1 1346888885
No 178
>PRK08763 single-stranded DNA-binding protein; Provisional
Probab=79.50 E-value=46 Score=30.59 Aligned_cols=44 Identities=11% Similarity=0.081 Sum_probs=32.2
Q ss_pred HHhcCCCCcEEEEEEEEecCCcc-cCCCc-eeEEEEEeEEEEeecC
Q 013865 153 FVRSLSNESIVDVIGVVSVPDVE-IKGAT-QQVEVQIKKLYCVSRA 196 (435)
Q Consensus 153 ~~~~l~~esiV~V~G~v~~~~~~-~~~~t-~~lEi~v~~i~vls~~ 196 (435)
....|++|+.|.|+|.+....-. ..|.+ ..+||.+..|.+|+..
T Consensus 66 v~~~L~KGs~V~VeGrL~~~~y~dkdG~kr~~~eIva~~i~~L~~~ 111 (164)
T PRK08763 66 AGEYLRKGSQCYIEGSIRYDKFTGQDGQERYVTEIVADEMQMLGGR 111 (164)
T ss_pred HHHhcCCCCEEEEEEEEEeceeECCCCCEEEEEEEEEeEEEECCCC
Confidence 34679999999999999754321 22433 3499999999998754
No 179
>PRK06958 single-stranded DNA-binding protein; Provisional
Probab=78.87 E-value=42 Score=31.41 Aligned_cols=58 Identities=10% Similarity=0.001 Sum_probs=39.1
Q ss_pred eEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCcc-cCCCc-eeEEEEEeEEEEeecC
Q 013865 133 STVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVE-IKGAT-QQVEVQIKKLYCVSRA 196 (435)
Q Consensus 133 ~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~~-~~~~t-~~lEi~v~~i~vls~~ 196 (435)
.-+.|++.. +......+.|++||.|.|+|.+....-. ..+.+ ..+||.+..|.+|...
T Consensus 52 ~w~~V~~fG------k~AE~v~~~LkKGs~V~VeGrL~~~~yeDkdG~kr~~~eVvA~~V~fL~sr 111 (182)
T PRK06958 52 EWHRVAFFG------RLAEIVGEYLKKGSSVYIEGRIRTRKWQGQDGQDRYSTEIVADQMQMLGGR 111 (182)
T ss_pred eEEEEEEeh------HHHHHHHHHhCCCCEEEEEEEEEeCceECCCCcEEEEEEEEEeEEEECCCC
Confidence 346666652 2222345679999999999999754321 22334 3599999999999754
No 180
>PF03100 CcmE: CcmE; InterPro: IPR004329 CcmE is the product of one of a cluster of Ccm genes that are necessary for cytochrome c biosynthesis in eubacteria. Expression of these proteins is induced when the organisms are grown under anaerobic conditions with nitrate or nitrite as the final electron acceptor.; GO: 0017003 protein-heme linkage, 0017004 cytochrome complex assembly, 0005886 plasma membrane; PDB: 1SR3_A 2KCT_A 1J6Q_A 1LM0_A.
Probab=77.06 E-value=23 Score=31.18 Aligned_cols=58 Identities=19% Similarity=0.173 Sum_probs=40.1
Q ss_pred CCCCEEEEEEEEe--eeec--CCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEe
Q 013865 102 LKDQEVLIRGRVH--TTRP--VGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVS 170 (435)
Q Consensus 102 ~~g~~V~v~GrV~--~~R~--~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~ 170 (435)
..|+.|+|.|.|. ++.. .+..+.| .|.|++..|.|+..... + ..+..|.-|.|+|...
T Consensus 48 ~~~~~vrv~G~V~~gSv~~~~~~~~~~F-~i~D~~~~i~V~Y~G~~---P-------d~F~eg~~VVv~G~~~ 109 (131)
T PF03100_consen 48 KVGRKVRVGGLVVEGSVEYDPDGNTLTF-TITDGGKEIPVVYTGPL---P-------DLFREGQGVVVEGRLG 109 (131)
T ss_dssp -TTSEEEEEEEEECTTEEE-TTSSEEEE-EEE-SS-EEEEEEES-----C-------TT--TTSEEEEEEEEC
T ss_pred cCCceEEEeeEEccCCEEEcCCCCEEEE-EEEECCcEEEEEECCCC---C-------ccccCCCeEEEEEEEC
Confidence 3799999999998 5443 3557776 67899999999987532 1 2467899999999883
No 181
>PRK12366 replication factor A; Reviewed
Probab=76.23 E-value=15 Score=40.87 Aligned_cols=84 Identities=18% Similarity=0.249 Sum_probs=59.6
Q ss_pred ceEEeccccCCCCCCEEEEEEEEeee-------ecCC--CceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCc
Q 013865 91 EWTVVGALNGSLKDQEVLIRGRVHTT-------RPVG--NKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNES 161 (435)
Q Consensus 91 ~~~~i~~l~~~~~g~~V~v~GrV~~~-------R~~G--~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~es 161 (435)
...+|++|.+. ...|+|.|||.++ |..| .+++=++|-|.+++|.+++-... .++...|..|+
T Consensus 62 ~~~~I~dl~p~--~~~v~i~arV~~~~~~r~~~~~~G~eGkv~~~~v~DetG~Ir~t~W~~~-------~~~~~~le~G~ 132 (637)
T PRK12366 62 EDFKISDIEEG--QINVEITGRIIEISNIKTFTRKDGSTGKLANITIADNTGTIRLTLWNDN-------AKLLKGLKEGD 132 (637)
T ss_pred ceeEHHHCcCC--CcceEEEEEEEEccCCeEEECCCCCccEEEEEEEEcCCCEEEEEEEchh-------hhhhccCCCCC
Confidence 45788888753 2469999999765 2323 37888899999999999997431 23456899999
Q ss_pred EEEEEEEEecCCcccCCCceeEEEEEeE
Q 013865 162 IVDVIGVVSVPDVEIKGATQQVEVQIKK 189 (435)
Q Consensus 162 iV~V~G~v~~~~~~~~~~t~~lEi~v~~ 189 (435)
++.|.|...+. -.+.+||.+..
T Consensus 133 v~~i~~~~v~~------~~~~~el~~~~ 154 (637)
T PRK12366 133 VIKIENARSRK------WNNDVELNSGS 154 (637)
T ss_pred EEEEeccEecc------cCCceEEEcCC
Confidence 99999865542 22457776643
No 182
>cd04496 SSB_OBF SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs bind with high affinity to ssDNA. They bind to and protect ssDNA intermediates during DNA metabolic pathways. All bacterial and eukaryotic SSBs studied to date oligomerize to bring together four OB folds in their active state. The majority (e.g. Escherichia coli SSB) have a single OB fold per monomer, which oligomerize to form a homotetramer. However, Deinococcus and Thermus SSB proteins have two OB folds per monomer, which oligomerize to form a homodimer. Mycobacterium tuberculosis SSB varies in quaternary structure from E. coli SSB. It forms a dimer of dimers having a unique dimer interface, which lends the protein greater stability. Included in this group are OB folds similar to Escherichia coli PriB. E.coli PriB is homodimeric with each monomer having a single OB fold. It does not appear to form higher order oligomers. PriB is an essential protein for the replication restart
Probab=75.69 E-value=21 Score=28.78 Aligned_cols=56 Identities=20% Similarity=0.149 Sum_probs=36.6
Q ss_pred CeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCcccC-CCc-eeEEEEEeEEEEe
Q 013865 132 VSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIK-GAT-QQVEVQIKKLYCV 193 (435)
Q Consensus 132 ~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~~~~-~~t-~~lEi~v~~i~vl 193 (435)
...++|.+-.+ ..-.+++.+.+||.|.|+|.+....-... +.+ ..++|.++.|.++
T Consensus 43 ~~~~~v~~~g~------~a~~~~~~~~kG~~V~v~G~l~~~~~~~~~g~~~~~~~i~~~~i~~~ 100 (100)
T cd04496 43 TDWIRVVAFGK------LAENAAKYLKKGDLVYVEGRLRTRSWEDKDGQKRYGTEVVADRIEFL 100 (100)
T ss_pred cEEEEEEEEhH------HHHHHHHHhCCCCEEEEEEEEEeceeECCCCCEEEEEEEEEEEEEEC
Confidence 44577777632 11234567999999999999975332222 333 4599999888764
No 183
>PRK07080 hypothetical protein; Validated
Probab=75.59 E-value=3.5 Score=41.72 Aligned_cols=48 Identities=13% Similarity=0.053 Sum_probs=37.3
Q ss_pred eeEEE-ecceecCCCCCCccccccccceeeeeccccHHHHHHHHHHHHHHH
Q 013865 316 RVFET-GPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTI 365 (435)
Q Consensus 316 rVfeI-gp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i 365 (435)
++|.+ |.|||.|++++.+-+-||+|-|+-.-. +-+.+.+.-+..+...
T Consensus 153 ~~~dv~g~CFR~E~s~dl~Rl~~F~mrE~V~iG--t~e~v~~~r~~w~e~~ 201 (317)
T PRK07080 153 RLVDVASYCFRHEPSLDPARMQLFRMREYVRIG--TPEQIVAFRQSWIERG 201 (317)
T ss_pred cEEEeeeeeeccCCCCCcHHHhheeeeEEEEec--CHHHHHHHHHHHHHHH
Confidence 66665 889999999999999999999986654 3567777766666543
No 184
>TIGR00471 pheT_arch phenylalanyl-tRNA synthetase, beta subunit. Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from eukaryotic cytosol, the Archaea, and spirochetes.
Probab=74.91 E-value=11 Score=41.10 Aligned_cols=112 Identities=19% Similarity=0.277 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHhhcCCeEEeeCceeeccC-C-C--C--CcceeEe-ccC-CCceeeccCh--HHHHhhhccCCC-----c
Q 013865 251 QSQVGNIFRQFLLSENFVEIHTPKLIAGS-S-E--G--GSAVFRL-DYK-GQSACLAQSP--QLHKQMSICGDF-----G 315 (435)
Q Consensus 251 rs~i~~~~r~fl~~~gF~EV~TP~l~~~~-~-e--g--ga~~F~v-~~~-~~~~~L~~Sp--ql~lq~~i~~g~-----~ 315 (435)
...+.+.+|++|...||.|+-|-.+++.. . + + +.....+ |-. ..--+||.|- .|-. .+.... -
T Consensus 364 ~~~~~~~ir~~L~~~Gf~E~itysf~s~~~~~~~~~~~~~~~v~l~NPis~e~s~lR~SLlp~LL~--~~~~N~~~~~~~ 441 (551)
T TIGR00471 364 LNKVSDIIREIMVGLGFQEVIPLTLTSEEVNFKRMRIEDNNDVKVANPKTLEYTIVRTSLLPGLLE--TLSENKHHELPQ 441 (551)
T ss_pred HHHHHHHHHHHHHhCCceeeccceEccHHHHHHHhccCCCCcEEeCCCCchhhhHhHhhhHHHHHH--HHHhcccCCCCe
Confidence 34566778999999999999999997541 1 1 0 0011111 221 2334566553 3332 222221 2
Q ss_pred eeEEEecceecCCCCCCccccccccceeeeec-cccHHHHHHHHHHHHHHH
Q 013865 316 RVFETGPVFRAEDSYTHRHLCEFTGLDVEMEI-KKHYSEVMDIVDRLFVTI 365 (435)
Q Consensus 316 rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~-~~~~~d~m~~~e~li~~i 365 (435)
|+||||+||...+... .+-.+|.++-+-++. .-++.|+...++.++..+
T Consensus 442 ~lFEiG~Vf~~~~~~~-~~e~~~~~l~~~~~g~~~df~d~Kg~ve~ll~~l 491 (551)
T TIGR00471 442 KIFEIGDVVVKDDKSE-TRSRVVTKLAVGITHSEANFNEIKSIVAALAREL 491 (551)
T ss_pred eEEEEEEEEEcCCccc-cccceeeEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 8999999996533111 133334555555543 114888888888888643
No 185
>PF15072 DUF4539: Domain of unknown function (DUF4539)
Probab=73.20 E-value=16 Score=29.92 Aligned_cols=56 Identities=16% Similarity=0.205 Sum_probs=43.6
Q ss_pred EEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEe
Q 013865 108 LIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVS 170 (435)
Q Consensus 108 ~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~ 170 (435)
.+.|.|.+++..+. =+|+.|+|.+|.+++.+..+- +..+-..|..|+++..+-+-.
T Consensus 6 ~l~v~Iks~~~~~~-D~~v~l~DpTG~i~~tiH~~v------~~~y~~~l~~GavLlLk~V~V 61 (86)
T PF15072_consen 6 CLVVIIKSIVPSSE-DAFVVLKDPTGEIRGTIHRKV------LEEYGDELSPGAVLLLKDVTV 61 (86)
T ss_pred EEEEEEEEeeccCC-CeEEEEECCCCcEEEEEeHHH------HhhcCCccccCEEEEEeeeeE
Confidence 58899999999986 589999999999999998531 123456788888888776543
No 186
>PTZ00213 asparagine synthetase A; Provisional
Probab=72.94 E-value=44 Score=34.16 Aligned_cols=118 Identities=13% Similarity=0.177 Sum_probs=81.8
Q ss_pred HHHHHHHHHHhh-----cCCeEEeeCceeeccCCC-----CCcc---eeEeccC-CCceeeccChHHHHhhhccC-CC--
Q 013865 252 SQVGNIFRQFLL-----SENFVEIHTPKLIAGSSE-----GGSA---VFRLDYK-GQSACLAQSPQLHKQMSICG-DF-- 314 (435)
Q Consensus 252 s~i~~~~r~fl~-----~~gF~EV~TP~l~~~~~e-----gga~---~F~v~~~-~~~~~L~~Spql~lq~~i~~-g~-- 314 (435)
-..+..+++||. ..+.+.|..|.+....++ .|.+ .|.+..+ +..+-.-+|---||.+++.- ||
T Consensus 12 q~aI~~iK~~F~~~L~~~LnL~rVsaPLfv~~~~GlnDnLnG~ErpV~f~~k~~~~~~~evVhSLAKWKR~aL~~y~f~~ 91 (348)
T PTZ00213 12 QEQILKVKQIFSEALAKELNLIRVEAPLLAEVGDGTQDNLSGVEKAVQVHVKGIPNSVFEVVHSLAKWKRLTLGEHKFPV 91 (348)
T ss_pred HHHHHHHHHHHHHHHHHHhCeeEecCCeEEcCCCCcccCCCCeeeeeEEecCCCCCceeEEehhhHHHHHHHHHhcCCCC
Confidence 334444555553 459999999999754321 1333 3666554 57777889999999988742 33
Q ss_pred -ceeEEEecceecCCCCCCccccccccceeeeeccccHHHHHHHHHHHHHHHHhhhh
Q 013865 315 -GRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLN 370 (435)
Q Consensus 315 -~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~ 370 (435)
+.+|+=.+..|....-++.|.-=--|-|||+.+.. -+-.++.+.+.+..|+..+.
T Consensus 92 geGlytdMnAiR~dE~ldn~HS~yVDQWDWEkvI~~-~~R~~~~Lk~tV~~iy~~ik 147 (348)
T PTZ00213 92 GEGIYTDMNALRVEEELDNIHSVYVDQWDWEMVIAP-ADRNLEYLKNTVRRLYAAIR 147 (348)
T ss_pred CceeeeccccccCCcccCccceeEeccccHHHhcCc-cccCHHHHHHHHHHHHHHHH
Confidence 67999888888654458899877889999998864 45567777777777776664
No 187
>cd00645 AsnA Asparagine synthetase (aspartate-ammonia ligase) (AsnA) catalyses the conversion of L-aspartate to L-asparagine in the presence of ATP and ammonia. AsnA is a homodimeric enzyme which is structurally similiar to the catalytic core domain of class II aminoacyl-tRNA synthetases. Ammonia-dependent AsnA is not homologous to the glutamine-dependent asparagine synthetase AsnB.
Probab=72.87 E-value=23 Score=35.64 Aligned_cols=106 Identities=14% Similarity=0.257 Sum_probs=76.6
Q ss_pred cCCeEEeeCceeeccCCC-----CCcc---eeEeccC-CCceeeccChHHHHhhhccC-CC---ceeEEEecceecCCCC
Q 013865 264 SENFVEIHTPKLIAGSSE-----GGSA---VFRLDYK-GQSACLAQSPQLHKQMSICG-DF---GRVFETGPVFRAEDSY 330 (435)
Q Consensus 264 ~~gF~EV~TP~l~~~~~e-----gga~---~F~v~~~-~~~~~L~~Spql~lq~~i~~-g~---~rVfeIgp~FR~E~s~ 330 (435)
..+.+.|..|.+....++ .|.+ .|.+..+ +..+-.-+|---||.+++.- || +.+|+=....|....-
T Consensus 18 ~LnL~rvsaPlfv~~~sGlnD~LnG~E~pV~f~~k~~~~~~~eiVhSLAKWKR~aL~~y~f~~geGlytdMnAiR~dE~l 97 (309)
T cd00645 18 ELNLIRVSAPLFVEKGSGLNDNLNGVEKPVSFKVKALPDATLEVVHSLAKWKRLALARYGFSLGEGLYTDMNAIRPDEDL 97 (309)
T ss_pred HhCeEEecCCeEEecCCCCccCCCCcccceEeecCCCCCceeEEeeehHHHHHHHHHhcCCCCCceeccCCccccCCccc
Confidence 459999999999865432 1333 3666555 57777888999999988742 44 6789988888864335
Q ss_pred CCccccccccceeeeeccccHHHHHHHHHHHHHHHHhhhh
Q 013865 331 THRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLN 370 (435)
Q Consensus 331 t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~ 370 (435)
++.|.-=--|-|||..+.. -+--++.+.+.+..|+..+.
T Consensus 98 dn~HS~yVDQWDWEkvI~~-~~R~~~~Lk~tV~~iy~~ik 136 (309)
T cd00645 98 DNIHSIYVDQWDWEKVISK-GERNLETLKETVNKIYKAIK 136 (309)
T ss_pred CccceeEeccccHHhhcCc-cccCHHHHHHHHHHHHHHHH
Confidence 8899877889999988864 45567777777777777664
No 188
>PRK05813 single-stranded DNA-binding protein; Provisional
Probab=71.92 E-value=98 Score=29.84 Aligned_cols=86 Identities=22% Similarity=0.338 Sum_probs=58.4
Q ss_pred CCEEEEEEEEee---eec--CCCceEEEEEEeC-----CeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCC
Q 013865 104 DQEVLIRGRVHT---TRP--VGNKLAFVVVRER-----VSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPD 173 (435)
Q Consensus 104 g~~V~v~GrV~~---~R~--~G~kl~Fl~Lrd~-----~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~ 173 (435)
-..|.+.|||-. +|. .|..++-+.|--. +.-|.|++-.. ...++..+.+||-|.|.|.+....
T Consensus 109 ~N~V~LiGrL~~DPelR~t~~G~~va~f~lAvnr~~~~td~i~~v~wg~-------~Ae~~~~l~KG~~V~V~GrL~sr~ 181 (219)
T PRK05813 109 PNEIFLDGYICKEPVYRTTPFGREIADLLLAVNRPYNKSDYIPCIAWGR-------NARFCKTLEVGDNIRVWGRVQSRE 181 (219)
T ss_pred ccEEEEEEEccCCCeEEECCCCCEEEEEEEEEcCCCCCceEEEEEEEhH-------HhHHHhhCCCCCEEEEEEEEEecc
Confidence 357999999986 454 4655666666532 45688887643 123456799999999999997542
Q ss_pred cc-cCC----Cc-eeEEEEEeEEEEeecC
Q 013865 174 VE-IKG----AT-QQVEVQIKKLYCVSRA 196 (435)
Q Consensus 174 ~~-~~~----~t-~~lEi~v~~i~vls~~ 196 (435)
-. ..+ .+ ..+||.+.++..|++.
T Consensus 182 y~~k~g~~~g~kr~~~eV~v~~i~~l~~~ 210 (219)
T PRK05813 182 YQKKLSEGEVVTKVAYEVSISKMEKVEKE 210 (219)
T ss_pred eEcCCCCccceEEEEEEEEEEEEEEcCCh
Confidence 21 122 12 3599999999998765
No 189
>PRK14699 replication factor A; Provisional
Probab=70.27 E-value=23 Score=38.21 Aligned_cols=91 Identities=15% Similarity=0.253 Sum_probs=63.3
Q ss_pred EEeccccCCCCCCEEEEEEEEeeee-------cCC--CceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEE
Q 013865 93 TVVGALNGSLKDQEVLIRGRVHTTR-------PVG--NKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIV 163 (435)
Q Consensus 93 ~~i~~l~~~~~g~~V~v~GrV~~~R-------~~G--~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV 163 (435)
..|.+|.+ .+..|+|.|||.++= ..| .++.=+.|-|+++.|.+++-... .++...|..|+.|
T Consensus 277 ~~I~~L~~--~~~~v~I~grV~~~~~~r~~~~~~Gseg~v~~~~l~DeTG~Ir~T~W~~~-------a~~~~~i~~Gd~v 347 (484)
T PRK14699 277 TPIEDIKA--DMNNINISGRVLDISEVRTFEKKDGSPGRVGNLLLGDSTGKIRLTLWDEK-------TNFLDEIDFDETV 347 (484)
T ss_pred cCHHHcCC--CCceeEEEEEEEEcCCCeEEEcCCCCeeEEEEEEEECCCCeEEEEEeCcc-------cccccccCCCceE
Confidence 34555543 367899999999652 233 26666889999999999986431 1345678899999
Q ss_pred EEEEEEecCCcccCCCceeEEEEEeEEEEeecC
Q 013865 164 DVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRA 196 (435)
Q Consensus 164 ~V~G~v~~~~~~~~~~t~~lEi~v~~i~vls~~ 196 (435)
.|.+.-++-. ...+.+||.+..-.++.+|
T Consensus 348 ~i~~~y~~~~----~~~~~~eL~~~~~t~I~~~ 376 (484)
T PRK14699 348 EVLNAYSREN----TFSQQVELNLGARGIIQKS 376 (484)
T ss_pred EEEeEEEEec----cCCccEEEEecCceeEeec
Confidence 8887543311 1235799999988888887
No 190
>PRK15491 replication factor A; Provisional
Probab=70.12 E-value=23 Score=36.90 Aligned_cols=81 Identities=17% Similarity=0.264 Sum_probs=56.2
Q ss_pred CCEEEEEEEEeeeec-------CCC--ceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEE-EecCC
Q 013865 104 DQEVLIRGRVHTTRP-------VGN--KLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGV-VSVPD 173 (435)
Q Consensus 104 g~~V~v~GrV~~~R~-------~G~--kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~-v~~~~ 173 (435)
+..|.|.|||.++-. .|. ++.=+.|-|.+++|.+++-... ......|..|+.|.|.+. ++..
T Consensus 176 ~~~V~I~g~V~~~~~~r~~~~~~G~~~~v~~~~l~DetG~Ir~t~W~~~-------a~~~~~l~~Gd~V~i~~~~~r~~- 247 (374)
T PRK15491 176 DSDINIVGKVLDISDVRTFQKKDGSQGRVRNITIGDETGKIRVTLWDGK-------TDLADKLENGDSVEIINGYARTN- 247 (374)
T ss_pred CccEEEEEEEEEccCceEEEecCCCeEEEEEEEEECCCCeEEEEEecch-------hcccccCCCCCEEEEEeceEEEe-
Confidence 345999999998742 343 5555888899999999886431 112256899999999764 4321
Q ss_pred cccCCCceeEEEEEeEEEEeecC
Q 013865 174 VEIKGATQQVEVQIKKLYCVSRA 196 (435)
Q Consensus 174 ~~~~~~t~~lEi~v~~i~vls~~ 196 (435)
...+.+||.+..-..+.+|
T Consensus 248 ----~~~g~~El~~~~~s~I~~~ 266 (374)
T PRK15491 248 ----NYSQEVEIQIGNHGSLRKT 266 (374)
T ss_pred ----ccCCCEEEEeCCCceEEEC
Confidence 1235799999877777777
No 191
>cd04491 SoSSB_OBF SoSSB_OBF: A subfamily of OB folds similar to the OB fold of the crenarchaeote Sulfolobus solfataricus single-stranded (ss) DNA-binding protein (SSoSSB). SSoSSB has a single OB fold, and it physically and functionally interacts with RNA polymerase. In vitro, SSoSSB can substitute for the basal transcription factor TBP, stimulating transcription from promoters under conditions in which TBP is limiting, and supporting transcription when TBP is absent. SSoSSB selectively melts the duplex DNA of promoter sequences. It also relieves transcriptional repression by the chromatin Alba. In addition, SSoSSB activates reverse gyrase activity, which involves DNA binding, DNA cleavage, strand passage and ligation. SSoSSB stimulates all these steps in the presence of the chromatin protein, Sul7d. SSoSSB antagonizes the inhibitory effect of Sul7d on reverse gyrase supercoiling activity. It also physically and functionally interacts with Mini-chromosome Maintenance (MCM), stimulating
Probab=68.15 E-value=47 Score=26.15 Aligned_cols=54 Identities=15% Similarity=0.123 Sum_probs=38.4
Q ss_pred ceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEE-EEEecCCcccCCCceeEEEEEeEEE
Q 013865 122 KLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVI-GVVSVPDVEIKGATQQVEVQIKKLY 191 (435)
Q Consensus 122 kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~-G~v~~~~~~~~~~t~~lEi~v~~i~ 191 (435)
++.=+.|.|+++.|.+++=.... ...+..|++|.+. |.+..- .+.++|.+.+..
T Consensus 23 ~~~~~~l~D~TG~i~~~~W~~~~---------~~~~~~G~vv~i~~~~v~~~-------~g~~ql~i~~~~ 77 (82)
T cd04491 23 KVQSGLVGDETGTIRFTLWDEKA---------ADDLEPGDVVRIENAYVREF-------NGRLELSVGKNS 77 (82)
T ss_pred EEEEEEEECCCCEEEEEEECchh---------cccCCCCCEEEEEeEEEEec-------CCcEEEEeCCce
Confidence 66667888999999998864210 3568999999999 766531 245778776543
No 192
>PRK13254 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=68.11 E-value=38 Score=30.64 Aligned_cols=58 Identities=19% Similarity=0.173 Sum_probs=43.5
Q ss_pred CCCCEEEEEEEEe--eeec-CCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEe
Q 013865 102 LKDQEVLIRGRVH--TTRP-VGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVS 170 (435)
Q Consensus 102 ~~g~~V~v~GrV~--~~R~-~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~ 170 (435)
..|+.|+|.|.|. ++.. .|..+.| .|.|++.+|.|..... .+ ..+.-|.-|.|+|.+.
T Consensus 49 ~~g~~vrvgG~V~~gSi~~~~~~~~~F-~ltD~~~~i~V~Y~G~---lP-------d~F~eg~~VVv~G~~~ 109 (148)
T PRK13254 49 PAGRRFRLGGLVEKGSVQRGDGLTVRF-VVTDGNATVPVVYTGI---LP-------DLFREGQGVVAEGRLQ 109 (148)
T ss_pred cCCCeEEEeEEEecCcEEeCCCCEEEE-EEEeCCeEEEEEECCC---CC-------ccccCCCEEEEEEEEC
Confidence 5699999999995 3433 5557777 7799999998888742 22 2466799999999985
No 193
>COG1571 Predicted DNA-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=66.88 E-value=30 Score=36.48 Aligned_cols=75 Identities=19% Similarity=0.245 Sum_probs=54.5
Q ss_pred CCEEEEEEEEee--eecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCcccCCCce
Q 013865 104 DQEVLIRGRVHT--TRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQ 181 (435)
Q Consensus 104 g~~V~v~GrV~~--~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~~~~~~t~ 181 (435)
...+.|.|+|.. ..--| +..|+.+.|+.+.|=+++... .+++-..+..|.+||.|.+.|.++. +
T Consensus 266 ~~~~~v~g~v~~~p~~ieG-ghv~v~i~d~~G~I~~~A~ep----tk~fr~~a~~L~pGD~i~~~G~~~~---------~ 331 (421)
T COG1571 266 YSKYRVVGRVEAEPRAIEG-GHVVVEITDGEGEIGAVAFEP----TKEFRELARKLIPGDEITVYGSVKP---------G 331 (421)
T ss_pred ccceEEEEEEecccEEeeC-CEEEEEecCCCceEEEEEecc----cccchHHHHhcCCCCEEEEecCccc---------c
Confidence 346788888766 33356 679999999999999988753 2344556789999999999998753 1
Q ss_pred eEEEEEeEEEEee
Q 013865 182 QVEVQIKKLYCVS 194 (435)
Q Consensus 182 ~lEi~v~~i~vls 194 (435)
. |.+++++++.
T Consensus 332 ~--~n~ek~~v~~ 342 (421)
T COG1571 332 T--LNLEKFQVLK 342 (421)
T ss_pred c--eeEEEEEEEE
Confidence 1 6666666654
No 194
>PRK14894 glycyl-tRNA synthetase; Provisional
Probab=65.36 E-value=4.1 Score=43.86 Aligned_cols=31 Identities=23% Similarity=0.311 Sum_probs=23.4
Q ss_pred eeEEEecceecCCC--CCCccccccccceeeee
Q 013865 316 RVFETGPVFRAEDS--YTHRHLCEFTGLDVEME 346 (435)
Q Consensus 316 rVfeIgp~FR~E~s--~t~rHl~EFt~lE~e~a 346 (435)
.+-+||++||||=+ +..--+-||+|+|+|.=
T Consensus 167 giaQIGk~FRNEIsPr~~l~R~REF~q~EiE~F 199 (539)
T PRK14894 167 GIAQVGKAFRNEINPRNFLFRVREFEQMEIEYF 199 (539)
T ss_pred eEEeeeccccCccCCCCceeecccchhheEEEE
Confidence 48899999999942 12224689999999863
No 195
>PLN02265 probable phenylalanyl-tRNA synthetase beta chain
Probab=64.20 E-value=21 Score=39.39 Aligned_cols=113 Identities=15% Similarity=0.142 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHhhcCCeEEeeCceeeccCC-------CC-CcceeEe-ccCC-CceeeccChHHHHhhhccCCC-----c
Q 013865 251 QSQVGNIFRQFLLSENFVEIHTPKLIAGSS-------EG-GSAVFRL-DYKG-QSACLAQSPQLHKQMSICGDF-----G 315 (435)
Q Consensus 251 rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~-------eg-ga~~F~v-~~~~-~~~~L~~Spql~lq~~i~~g~-----~ 315 (435)
...+.+.+|+.|...||.||-|-.|++... .. +.....+ |-.. .--+||.|-=--|=..+.... -
T Consensus 399 ~~~~~~~iR~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~~~~~v~I~NP~s~e~~vlRtSLlPgLL~~l~~N~~~~~p~ 478 (597)
T PLN02265 399 LNQFSDLLRAEVAMAGFTEVLTWILCSHKENFAMLNREDDGNSAVIIGNPRSADFEVVRTSLLPGLLKTLGHNKDAPKPI 478 (597)
T ss_pred HHHHHHHHHHHHHHCCceeeeceeeCChHHHHHhhcCCccCCceEEECCCcchhHHHHHHhhHHHHHHHHHHhhcCCCCe
Confidence 345667789999999999999999985420 00 1111222 2111 223466553222222232222 3
Q ss_pred eeEEEecceecCCCCCCccccccccceeeeecc-ccHHHHHHHHHHHHHH
Q 013865 316 RVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIK-KHYSEVMDIVDRLFVT 364 (435)
Q Consensus 316 rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~-~~~~d~m~~~e~li~~ 364 (435)
|+||||.||-.... ..+...|.++|=+-++.. .++.++-.+++.++..
T Consensus 479 klFEiG~V~~~~~~-~~~~~~e~~~la~~~~g~~~~f~~ikg~le~ll~~ 527 (597)
T PLN02265 479 KLFEVSDVVLLDES-KDVGARNSRRLAALYCGTTSGFEVIHGLVDRIMEV 527 (597)
T ss_pred eEEEeEeEEecCCc-ccCCcchhhEEEEEEECCCCCHhhHHHHHHHHHHH
Confidence 89999999954321 111112333443333332 1477888888888754
No 196
>PRK08402 replication factor A; Reviewed
Probab=64.08 E-value=45 Score=34.47 Aligned_cols=92 Identities=14% Similarity=0.167 Sum_probs=58.0
Q ss_pred eEEeccccCCCCCCEEEEEEEEeee---e----cCCC--ceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcE
Q 013865 92 WTVVGALNGSLKDQEVLIRGRVHTT---R----PVGN--KLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESI 162 (435)
Q Consensus 92 ~~~i~~l~~~~~g~~V~v~GrV~~~---R----~~G~--kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esi 162 (435)
..+|++|.+. .+.|++.|+|.++ | ..|. ++.=+.|-|.++++.+++=... .-++...|..|++
T Consensus 62 ~~kI~dl~~g--~~~V~v~~rVl~~~~~r~f~rrdG~~~~V~~i~l~DeTG~ir~TlW~~~------a~~~~~~l~~Gdv 133 (355)
T PRK08402 62 LMHISDLVPG--MRGVNIVGRVLRKYPPREYTKKDGSTGRVASLIIYDDTGRARVVLWDAK------VAKYYNKINVGDV 133 (355)
T ss_pred ccCHHHccCC--CceeeEEEEEEEccCCceeeccCCCcceEEEEEEEcCCCeEEEEEechh------hhhhcccCCCCCE
Confidence 3567777642 3689999999986 3 2232 3444899999999987765321 1123356999999
Q ss_pred EEEEEEEecCCcccCCCceeEEEEEeEEEEeecC
Q 013865 163 VDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRA 196 (435)
Q Consensus 163 V~V~G~v~~~~~~~~~~t~~lEi~v~~i~vls~~ 196 (435)
|.|.|.-+.- .-.|.+||++.+-..+...
T Consensus 134 i~I~~a~V~e-----~~~G~~eLsvg~~s~i~~~ 162 (355)
T PRK08402 134 IKVIDAQVRE-----SLSGLPELHINFRARIILN 162 (355)
T ss_pred EEEECCEEee-----cCCCcEEEEECCCceEEeC
Confidence 9998643321 1124468888765555444
No 197
>PRK05733 single-stranded DNA-binding protein; Provisional
Probab=64.00 E-value=1.2e+02 Score=28.02 Aligned_cols=56 Identities=14% Similarity=0.023 Sum_probs=37.4
Q ss_pred EEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCcccCCCc-eeEEEEEe---EEEEeec
Q 013865 134 TVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGAT-QQVEVQIK---KLYCVSR 195 (435)
Q Consensus 134 ~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~~~~~~t-~~lEi~v~---~i~vls~ 195 (435)
-+-|++-.. ......+.|.+|+.|.|+|.+....-...|.+ ..+||.+. .|.+|+.
T Consensus 54 w~~Vv~fgk------~Ae~v~~~l~KGs~V~VeGrLr~~~y~kdG~~r~~~eVvvd~~g~v~~L~~ 113 (172)
T PRK05733 54 WHRVSLFGK------VAEIAGEYLRKGSQVYIEGKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGG 113 (172)
T ss_pred EEEEEEehH------HHHHHHHHhCCCCEEEEEEEEEeCcEecCCEEEEEEEEEEeecCeEEECcC
Confidence 366666532 11234567999999999999975433333433 34899998 7898864
No 198
>PRK05813 single-stranded DNA-binding protein; Provisional
Probab=64.00 E-value=93 Score=29.99 Aligned_cols=85 Identities=12% Similarity=0.126 Sum_probs=56.0
Q ss_pred CCCEEEEEEEEee---eecCCCceEEEEEE-------eCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEe-c
Q 013865 103 KDQEVLIRGRVHT---TRPVGNKLAFVVVR-------ERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVS-V 171 (435)
Q Consensus 103 ~g~~V~v~GrV~~---~R~~G~kl~Fl~Lr-------d~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~-~ 171 (435)
....|.+.|||.+ .|-....-.|+.+. +....|.||+.... ...+. +..|+.|.|+|.+. .
T Consensus 7 ~~NkV~L~Grl~~d~e~~~~~~G~~~~~f~laV~R~s~~~D~i~v~v~~rl-------ae~~~-l~kG~~v~VeGqlrsy 78 (219)
T PRK05813 7 ENNKVYLEGKVVSELEFSHEMYGEGFYNFKLEVPRLSDSKDILPVTVSERL-------LAGMD-LKVGTLVIVEGQLRSY 78 (219)
T ss_pred hcCEEEEEEEEcCCceEEEEeCCeEEEEEEEEeeccCCCccEEEEEEEhhh-------hhhhc-ccCCCEEEEEEEEEEe
Confidence 4567899999876 34422234565553 44567899987532 22233 99999999999998 2
Q ss_pred CCcccCCC-ceeEEEEEeEEEEeecC
Q 013865 172 PDVEIKGA-TQQVEVQIKKLYCVSRA 196 (435)
Q Consensus 172 ~~~~~~~~-t~~lEi~v~~i~vls~~ 196 (435)
.... .+. .--+||.+.+|..|++.
T Consensus 79 ~~~~-~G~~R~vl~V~a~~i~~l~~~ 103 (219)
T PRK05813 79 NKFI-DGKNRLILTVFARNIEYCDER 103 (219)
T ss_pred ccCC-CCcEEEEEEEEEEEEEEccCC
Confidence 2211 122 23499999999998775
No 199
>PRK06642 single-stranded DNA-binding protein; Provisional
Probab=63.63 E-value=1.1e+02 Score=27.52 Aligned_cols=44 Identities=14% Similarity=0.192 Sum_probs=30.4
Q ss_pred HHhcCCCCcEEEEEEEEecCCc-ccCCCc-eeEEEEEeEE----EEeecC
Q 013865 153 FVRSLSNESIVDVIGVVSVPDV-EIKGAT-QQVEVQIKKL----YCVSRA 196 (435)
Q Consensus 153 ~~~~l~~esiV~V~G~v~~~~~-~~~~~t-~~lEi~v~~i----~vls~~ 196 (435)
..+.|.+||.|.|+|.+....- ...|.+ ...||.+.+| .+|+..
T Consensus 68 ~~~~l~KG~~V~V~GrL~~~~y~dkdG~~r~~~eVvv~~~~~~i~fl~~k 117 (152)
T PRK06642 68 VERYVTKGSKLYIEGSLQTRKWNDNSGQEKYTTEVVLQNFNSQLILLDSK 117 (152)
T ss_pred HHHhCCCCCEEEEEEEEEeCeeECCCCCEEEEEEEEEEecccceEeccCC
Confidence 3467999999999999975422 223444 3489999876 666644
No 200
>TIGR02930 vnfG_nitrog V-containing nitrogenase, delta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, VnfG, represents the delta subunit of the V-containing (vanadium) alternative nitrogenase. It is homologous to AnfG, the delta subunit of the Fe-only nitrogenase.
Probab=63.44 E-value=12 Score=31.99 Aligned_cols=50 Identities=12% Similarity=0.165 Sum_probs=41.8
Q ss_pred CcccCCCCCCceeeHHHHHHHHHHcCCCCCCCCCCCcHHHHHHHHHhhcC
Q 013865 386 FEPLKYKPKTLRLTFEEGVQMLKDAGVEIDPLGDLNTESERKLGQLVLEK 435 (435)
Q Consensus 386 ~~~~~~~~p~~rit~~eai~lL~~~g~~~~~~~dl~te~E~~L~~~vkek 435 (435)
.+++....|--|.=|.||+-|.......++|..+|+.++=+.|.+-+|++
T Consensus 41 GE~~~~~Tp~Dr~yy~DAv~la~~~k~rfpW~~~~~kdei~~l~~~lk~r 90 (109)
T TIGR02930 41 GEKINLETPMDKLFYADAKNLASDIKERFPWISELDKDQILELVESVKKR 90 (109)
T ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHhCcHHHhCCHHHHHHHHHHHHHH
Confidence 34455556788999999999888877889999999999999999888874
No 201
>cd00673 AlaRS_core Alanyl-tRNA synthetase (AlaRS) class II core catalytic domain. AlaRS is a homodimer. It is responsible for the attachment of alanine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its predicted structure and the presence of three characteristic sequence motifs.
Probab=63.25 E-value=30 Score=33.67 Aligned_cols=96 Identities=20% Similarity=0.338 Sum_probs=59.1
Q ss_pred HHHHHHHHHHhhcCCeEEeeCceeeccC-C-----CCCcceeEeccCCCceeeccChHHHHhhhccCCCceeEEEeccee
Q 013865 252 SQVGNIFRQFLLSENFVEIHTPKLIAGS-S-----EGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFR 325 (435)
Q Consensus 252 s~i~~~~r~fl~~~gF~EV~TP~l~~~~-~-----egga~~F~v~~~~~~~~L~~Spql~lq~~i~~g~~rVfeIgp~FR 325 (435)
+.|.+.+-+||.++|...|..--|++.. + ..|..+| +++||-+.+. ...|+-..-+|.|
T Consensus 2 ~eiR~~fl~FF~~kgH~~v~s~slvp~dDptllFtnAGM~~F------kp~f~G~~~p---------~~~r~~~~QkCiR 66 (232)
T cd00673 2 SEIRETFLSFFEKKGHTRVPSSPVVPRDDPTLLFTNAGMNQF------KPIFLGEVPP---------PANRLVNSQKCIR 66 (232)
T ss_pred hHHHHHHHHHHHhCCCEEeCCCCcCCCCCCchheeccchhhh------hHHhcCCCCC---------CCCceeeeeecee
Confidence 3567788899999999998877666321 0 1122222 2222222221 2357777888999
Q ss_pred cCC----CCCCccccccccceeeeeccccH--HHHHHHHHHHHHH
Q 013865 326 AED----SYTHRHLCEFTGLDVEMEIKKHY--SEVMDIVDRLFVT 364 (435)
Q Consensus 326 ~E~----s~t~rHl~EFt~lE~e~a~~~~~--~d~m~~~e~li~~ 364 (435)
.-+ ..|.||++=|.||-- .+|.+ | ++.+..+=+++..
T Consensus 67 ~~DienVG~t~rHhTfFEMLGN-fSFgd-YFK~eaI~~awe~LT~ 109 (232)
T cd00673 67 AGDIDNVGKTGRHHTFFEMLGN-FSFGD-YFKEEAIAFAWELLTE 109 (232)
T ss_pred cCChhhccccccchhhhhhhcc-cchhh-hhHHHHHHHHHHHHHh
Confidence 632 358999999999953 56654 4 5666666666544
No 202
>PRK07217 replication factor A; Reviewed
Probab=62.57 E-value=98 Score=31.45 Aligned_cols=92 Identities=12% Similarity=0.146 Sum_probs=65.1
Q ss_pred eEEeccccCCCCCCEEEEEEEEeee--ecCCCceEE-EEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEE
Q 013865 92 WTVVGALNGSLKDQEVLIRGRVHTT--RPVGNKLAF-VVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGV 168 (435)
Q Consensus 92 ~~~i~~l~~~~~g~~V~v~GrV~~~--R~~G~kl~F-l~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~ 168 (435)
-.+|++|.+ .++-|+|.|+|.++ +.++ .+.. -.|-|.+++|-.++=.+.. ...|..|+++.|.+.
T Consensus 72 ~~kI~Di~~--~~~~VsV~aKVl~l~e~~~~-si~qvGllgDETG~IkfT~W~~s~---------~~~leeGd~~rI~na 139 (311)
T PRK07217 72 LVNIADIDE--PEQWVDVTAKVVQLWEPSSD-SIAQVGLLGDETGTIKFTKWAKSD---------LPELEEGKSYLLKNV 139 (311)
T ss_pred ceeeeecCC--CCCcEEEEEEEEEecCCCCC-ceEEEEEEEcCCceEEEEEccCCC---------CCcccCCCEEEEEeE
Confidence 467888764 47789999999986 3334 4555 4577888999888754311 135889999999998
Q ss_pred EecCCcccCCCceeEEEEEeEEEEeecC-CCCCc
Q 013865 169 VSVPDVEIKGATQQVEVQIKKLYCVSRA-AKTPI 201 (435)
Q Consensus 169 v~~~~~~~~~~t~~lEi~v~~i~vls~~-~~lP~ 201 (435)
.+.- -.|.++|.+.+...+... ..++.
T Consensus 140 ~v~e------y~G~~~lnlg~~t~I~~~de~IeV 167 (311)
T PRK07217 140 VTDE------YQGRFSVKLNRTTSIEELDEDIEV 167 (311)
T ss_pred EEee------ECCEEEEEeCCceEEEeCCCCccc
Confidence 7642 125689999988888776 55543
No 203
>PRK08182 single-stranded DNA-binding protein; Provisional
Probab=62.56 E-value=1.2e+02 Score=27.31 Aligned_cols=63 Identities=8% Similarity=0.046 Sum_probs=40.8
Q ss_pred EEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCc-ccCCCc-eeEEEEEeEEEEeecC-CCCCcc
Q 013865 134 TVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDV-EIKGAT-QQVEVQIKKLYCVSRA-AKTPIT 202 (435)
Q Consensus 134 ~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~-~~~~~t-~~lEi~v~~i~vls~~-~~lP~~ 202 (435)
-+.|++-.. ........|.+|+.|.|+|.+....- ...|.+ ..++|.+.+|.+|... ...+..
T Consensus 55 w~~V~~wg~------~Ae~v~~~l~KG~~V~V~GrL~~~~w~dkdG~~r~~~eI~a~~i~~l~~r~~~~~~~ 120 (148)
T PRK08182 55 WAPVELWHR------DAEHWARLYQKGMRVLVEGRMERDEWTDNEDNERVTFKVEARRVGILPYRIESVTLS 120 (148)
T ss_pred EEEEEEEhH------HHHHHHHhcCCCCEEEEEEEEEecccCCCCCCEEEEEEEEEeEEEEcCCcccccEec
Confidence 466776532 12234567999999999999975422 222433 3499999999988654 444443
No 204
>PRK06386 replication factor A; Reviewed
Probab=62.56 E-value=78 Score=32.82 Aligned_cols=90 Identities=10% Similarity=0.069 Sum_probs=53.9
Q ss_pred eEEeccccCCCCCCEEEEEEEEeeeecCCCceEEEEEEeCC-eEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEe
Q 013865 92 WTVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERV-STVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVS 170 (435)
Q Consensus 92 ~~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~-~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~ 170 (435)
..+|++|.+. +.-|+|.|+|-.+ +.+ .++ ++++ +++|..+-..... .-.+..|...|..|++|.|.+..+
T Consensus 107 ~~KI~DL~~g--~~~v~V~akVle~---~e~--e~~-~~g~~~~v~sg~lgDeTG-rIr~TlW~~~l~eGd~v~i~na~v 177 (358)
T PRK06386 107 LVKIRDLSLV--TPYVSVIGKITGI---TKK--EYD-SDGTSKIVYQGYIEDDTA-RVRISSFGKPLEDNRFVRIENARV 177 (358)
T ss_pred ccEeEeccCC--CCceEEEEEEEEc---cCc--eEe-cCCCccEEEEEEEEcCCC-eEEEEEccccccCCCEEEEeeeEE
Confidence 3567777543 4568899999664 112 224 3333 4555444322111 111223555789999999999775
Q ss_pred cCCcccCCCceeEEEEEeEEEEeecC
Q 013865 171 VPDVEIKGATQQVEVQIKKLYCVSRA 196 (435)
Q Consensus 171 ~~~~~~~~~t~~lEi~v~~i~vls~~ 196 (435)
.. -.|.+||.+.....+.+.
T Consensus 178 ~e------~~G~~el~v~~~t~I~~~ 197 (358)
T PRK06386 178 SQ------YNGYIEISVGNKSVIKEV 197 (358)
T ss_pred Ec------cCCeEEEEeCCeEEEEEC
Confidence 42 236799999998888765
No 205
>PRK07772 single-stranded DNA-binding protein; Provisional
Probab=62.54 E-value=1.4e+02 Score=28.08 Aligned_cols=51 Identities=20% Similarity=0.260 Sum_probs=31.6
Q ss_pred EEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCcc-cCCCc-eeEEEEEeEE
Q 013865 134 TVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVE-IKGAT-QQVEVQIKKL 190 (435)
Q Consensus 134 ~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~~-~~~~t-~~lEi~v~~i 190 (435)
-|.|++-.. .....++.|++|+.|.|+|.+....-. ..+.+ ..+||.+.+|
T Consensus 54 fi~V~~Wg~------~Ae~va~~L~KGd~V~V~GrL~~r~wedkdG~~rt~~eV~a~~V 106 (186)
T PRK07772 54 FLRCSIWRQ------AAENVAESLTKGMRVIVTGRLKQRSYETREGEKRTVVELEVDEI 106 (186)
T ss_pred EEEEEEecH------HHHHHHHhcCCCCEEEEEEEEEcCceECCCCCEEEEEEEEEEEc
Confidence 567777632 222355789999999999999743211 22333 2377777664
No 206
>PRK09010 single-stranded DNA-binding protein; Provisional
Probab=62.30 E-value=1.4e+02 Score=27.90 Aligned_cols=57 Identities=14% Similarity=0.012 Sum_probs=36.8
Q ss_pred EEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCcc-cCCCc-eeEEEEEe---EEEEeecC
Q 013865 134 TVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVE-IKGAT-QQVEVQIK---KLYCVSRA 196 (435)
Q Consensus 134 ~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~~-~~~~t-~~lEi~v~---~i~vls~~ 196 (435)
-+.|++-.+ ......+.|++||.|.|+|.+....-. ..+.+ ..+||.+. ++.+|++.
T Consensus 55 w~~V~~fgk------~Ae~~~~~L~KGs~V~VeGrL~~~~yedkdG~~r~~~eVvv~~~~~~~~l~~r 116 (177)
T PRK09010 55 WHRVVLFGK------LAEVAGEYLRKGSQVYIEGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGR 116 (177)
T ss_pred EEEEEEehh------HHHHHHHhcCCCCEEEEEEEEEeccccCCCCCEEEEEEEEEecCCcEEEccCC
Confidence 456666532 122345679999999999999753221 22333 34888877 78888754
No 207
>TIGR02929 anfG_nitrog Fe-only nitrogenase, delta subunit. Nitrogenase, also called dinitrogenase, is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, AnfG, represents the delta subunit of the Fe-only alternative nitrogenase. It is homologous to VnfG, the delta subunit of the V-containing (vanadium) nitrogenase.
Probab=62.01 E-value=13 Score=31.65 Aligned_cols=50 Identities=18% Similarity=0.114 Sum_probs=41.6
Q ss_pred CcccCCCCCCceeeHHHHHHHHHHcCCCCCCCCCCCcHHHHHHHHHhhcC
Q 013865 386 FEPLKYKPKTLRLTFEEGVQMLKDAGVEIDPLGDLNTESERKLGQLVLEK 435 (435)
Q Consensus 386 ~~~~~~~~p~~rit~~eai~lL~~~g~~~~~~~dl~te~E~~L~~~vkek 435 (435)
.+++....|--|.=|.||+-|.......++|..+|+.++=+.|.+-+|++
T Consensus 41 GE~~~~~Tp~Dr~y~~DAv~la~~~k~rfpW~~~~~kdei~~l~~~lk~r 90 (109)
T TIGR02929 41 GENAREDTSADRCYWVDAVTLAGAYKRRFPWLEDMTKDEIKTLMQALHEK 90 (109)
T ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHhCcHHHhCCHHHHHHHHHHHHHH
Confidence 34455556788999999999888877889999999999999999888874
No 208
>TIGR00594 polc DNA-directed DNA polymerase III (polc). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=61.80 E-value=14 Score=43.41 Aligned_cols=37 Identities=16% Similarity=0.442 Sum_probs=31.6
Q ss_pred CCCEEEEEEEEeeeec-----CCCceEEEEEEeCCeEEEEEE
Q 013865 103 KDQEVLIRGRVHTTRP-----VGNKLAFVVVRERVSTVQCLA 139 (435)
Q Consensus 103 ~g~~V~v~GrV~~~R~-----~G~kl~Fl~Lrd~~~~iQvv~ 139 (435)
.|.+|+|.|.|.++|. .|..|+|+.|.|.++.+.+++
T Consensus 980 ~g~~v~v~G~i~~~~~~~~tkkG~~maf~tleD~tg~ie~vi 1021 (1022)
T TIGR00594 980 NDSQVRTLGGLNSVKKKITTKNGKPMAFLQLEDETGSIEVVV 1021 (1022)
T ss_pred CCCEEEEEEEEEEEEEecccCCCCEEEEEEEEECCCcEEEEe
Confidence 5788999999987654 355699999999999999987
No 209
>PRK07211 replication factor A; Reviewed
Probab=61.27 E-value=46 Score=35.89 Aligned_cols=79 Identities=16% Similarity=0.207 Sum_probs=54.9
Q ss_pred CCEEEEEEEEeee---e----cCC--CceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEE-EEecCC
Q 013865 104 DQEVLIRGRVHTT---R----PVG--NKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIG-VVSVPD 173 (435)
Q Consensus 104 g~~V~v~GrV~~~---R----~~G--~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G-~v~~~~ 173 (435)
...|.|.|||.++ | ..| .++.=+.|-|.+++|.+++-... ...+..|..|++|.|.| .|+.-
T Consensus 171 ~~~v~I~grV~~v~~iRtf~r~dGseGkv~sv~L~DeTG~IR~TlW~d~-------Ad~~~~le~G~Vv~I~~a~Vre~- 242 (485)
T PRK07211 171 LSDVTLVGVVLDTDSVRTFDRDDGSEGRVSNLTVGDETGRVRVTLWDDR-------ADLAEELDAGESVEIVDGYVRER- 242 (485)
T ss_pred CCceEEEEEEEEcCCCeEEECCCCCeeEEEEEEEEcCCCeEEEEEechh-------hhhhccCCCCCEEEEEeeEEEec-
Confidence 4568999999854 2 223 15666888899999999986421 12225699999999985 44321
Q ss_pred cccCCCceeEEEEEeEEEEeecC
Q 013865 174 VEIKGATQQVEVQIKKLYCVSRA 196 (435)
Q Consensus 174 ~~~~~~t~~lEi~v~~i~vls~~ 196 (435)
.+.+||.+..-..+.+|
T Consensus 243 ------~g~~ELsl~~~s~I~~~ 259 (485)
T PRK07211 243 ------DGSLELHVGDRGAVEEV 259 (485)
T ss_pred ------CCcEEEEECCCceEEEC
Confidence 25799999877777766
No 210
>PRK04036 DNA polymerase II small subunit; Validated
Probab=61.11 E-value=36 Score=36.85 Aligned_cols=73 Identities=21% Similarity=0.266 Sum_probs=50.4
Q ss_pred eccccCCC-CCCEEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEec
Q 013865 95 VGALNGSL-KDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSV 171 (435)
Q Consensus 95 i~~l~~~~-~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~ 171 (435)
+..|.+.. .|+.++|-|-|..+|...+.=..+.|-|.+++|+++...+. ++.......|-.|.+|.|.|.+..
T Consensus 143 i~~l~~~~~~~~~~~viG~v~~~~~~~~g~~~~~LED~sgrv~l~~~~~~----~~~~~~~~~lvtg~vv~v~G~~~~ 216 (504)
T PRK04036 143 IESLKKLKRGGEEVSIIGMVSDIRSTKNGHKIVELEDTTGTFPVLIMKDR----EDLAELADELLLDEVIGVEGTLSG 216 (504)
T ss_pred HHHHhcCccCCceEEEEEEEEEeecccCCceEEEEECCCCeEEEEeecch----hhhhhhhhcccCceEEEEEEEEcC
Confidence 33443333 57889999999999854322224789999999999985321 122333457889999999998653
No 211
>PF03139 AnfG_VnfG: Vanadium/alternative nitrogenase delta subunit; InterPro: IPR004349 The nitrogenase complex 1.18.6.1 from EC catalyses the conversion of molecular nitrogen to ammonia (nitrogen fixation). The complex is hexameric, consisting of 2 alpha, 2 beta, and 2 delta subunits. This family represents the delta subunit of a group of nitrogenases that do not utilise molybdenum (Mo) as a cofactor, but instead use either vanadium (V nitrogenases), or iron (alternative nitrogenases). ; GO: 0016163 nitrogenase activity, 0009399 nitrogen fixation, 0055114 oxidation-reduction process
Probab=60.53 E-value=20 Score=30.73 Aligned_cols=51 Identities=14% Similarity=0.133 Sum_probs=42.6
Q ss_pred CCcccCCCCCCceeeHHHHHHHHHHcCCCCCCCCCCCcHHHHHHHHHhhcC
Q 013865 385 PFEPLKYKPKTLRLTFEEGVQMLKDAGVEIDPLGDLNTESERKLGQLVLEK 435 (435)
Q Consensus 385 ~~~~~~~~~p~~rit~~eai~lL~~~g~~~~~~~dl~te~E~~L~~~vkek 435 (435)
-.+++....|--|.=|.||+-|.......++|..+++.++=+.|.+-+|++
T Consensus 43 ~gE~v~~eTp~Drcyw~DAv~la~~~k~rfpW~~~~~k~ei~~lm~~lk~r 93 (112)
T PF03139_consen 43 CGEPVDLETPADRCYWVDAVCLAEAFKERFPWINEMSKDEIKSLMQGLKER 93 (112)
T ss_pred cCCCCCCCCchhHHHHHHHHHHHHHHHHcCcHHHHCCHHHHHHHHHHHHHH
Confidence 345555567888999999999877777789999999999999999988874
No 212
>PLN02734 glycyl-tRNA synthetase
Probab=60.11 E-value=3.3 Score=46.16 Aligned_cols=30 Identities=30% Similarity=0.303 Sum_probs=23.2
Q ss_pred eeEEEecceecCCC--CCCccccccccceeee
Q 013865 316 RVFETGPVFRAEDS--YTHRHLCEFTGLDVEM 345 (435)
Q Consensus 316 rVfeIgp~FR~E~s--~t~rHl~EFt~lE~e~ 345 (435)
.+-+||++||||=| +..--+-||+|.|+|.
T Consensus 277 ~~AQIGk~FRNEIsPR~gl~R~REF~qaEiE~ 308 (684)
T PLN02734 277 AAAQIGQAFRNEISPRQGLLRVREFTLAEIEH 308 (684)
T ss_pred eeeeccHhhhcccCcccceeeechhhhhhhhe
Confidence 47899999999942 2333568999999986
No 213
>PRK05425 asparagine synthetase AsnA; Provisional
Probab=58.24 E-value=1.2e+02 Score=31.03 Aligned_cols=106 Identities=15% Similarity=0.235 Sum_probs=76.4
Q ss_pred cCCeEEeeCceeeccCCC-----CCcc---eeEeccCC-CceeeccChHHHHhhhcc-CCC---ceeEEEecceecCCCC
Q 013865 264 SENFVEIHTPKLIAGSSE-----GGSA---VFRLDYKG-QSACLAQSPQLHKQMSIC-GDF---GRVFETGPVFRAEDSY 330 (435)
Q Consensus 264 ~~gF~EV~TP~l~~~~~e-----gga~---~F~v~~~~-~~~~L~~Spql~lq~~i~-~g~---~rVfeIgp~FR~E~s~ 330 (435)
..+.+.|..|.+....++ .|.+ .|.+..++ ..+-.-+|---||.+++. -|| +.+|+=....|....-
T Consensus 29 ~LnL~rvsaPlfv~~~sGlnD~LnG~E~pV~F~~k~~~~~~~eiVhSLAKWKR~aL~~y~f~~geGlytdMnAiR~dE~l 108 (327)
T PRK05425 29 KLNLIRVSAPLFVRVGSGLNDNLNGVEKPVSFKVKDLPDATFEVVHSLAKWKRLALKRYGFSAGEGLYTDMNAIRPDEDL 108 (327)
T ss_pred hhCeeEecCCeEEcCCCCcccCCCCeecceEeeccCCCCCeeEEEeehHHHHHHHHHhcCCCCCceeccCCccccCCccc
Confidence 469999999999854322 1323 36665554 577788999999999875 244 5789988888864435
Q ss_pred CCccccccccceeeeeccccHHHHHHHHHHHHHHHHhhhh
Q 013865 331 THRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLN 370 (435)
Q Consensus 331 t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~ 370 (435)
++.|.-=--+-|||..+.. -+-.++.+.+.+..|+..+.
T Consensus 109 d~~HS~yVDQWDWEkvI~~-~~Rn~~~Lk~tV~~Iy~~ik 147 (327)
T PRK05425 109 DNTHSVYVDQWDWEKVIGK-EERNLDYLKETVEKIYKAIK 147 (327)
T ss_pred CcccceEeccccHHHhCCc-cccCHHHHHHHHHHHHHHHH
Confidence 8889877889999988864 45567777777777777664
No 214
>TIGR00669 asnA aspartate--ammonia ligase, AsnA-type. The fact that the protein from the H. influenzae is more than 70 % identical to that from the spirochete Treponema pallidum, but less than 65 % identical to that from the closely related E. coli, strongly suggests lateral transfer.
Probab=57.63 E-value=2.3e+02 Score=29.00 Aligned_cols=117 Identities=15% Similarity=0.164 Sum_probs=81.4
Q ss_pred HHHHHHHHHhh-----cCCeEEeeCceeeccCCC-----CCcc---eeEeccC-CCceeeccChHHHHhhhcc-CCC---
Q 013865 253 QVGNIFRQFLL-----SENFVEIHTPKLIAGSSE-----GGSA---VFRLDYK-GQSACLAQSPQLHKQMSIC-GDF--- 314 (435)
Q Consensus 253 ~i~~~~r~fl~-----~~gF~EV~TP~l~~~~~e-----gga~---~F~v~~~-~~~~~L~~Spql~lq~~i~-~g~--- 314 (435)
..+..+++||. ..+.+.|..|.+....++ .|.+ .|.+... +..+-.-+|---||.+++. -||
T Consensus 10 ~aI~~iK~~F~~~L~~~L~L~rVsAPLfv~~~sGlnD~LnG~ErpV~f~~k~~~~~~~evVhSLAKWKR~aL~~y~f~~g 89 (330)
T TIGR00669 10 QQISFVKSTFTQQLEERLGLIEVQGPILSQVGDGTQDNLSGREKAVQVKVKAIPDAQFEVVHSLAKWKRHTLARHDFSAG 89 (330)
T ss_pred HHHHHHHHHHHHHHHHHhCeEEeccceEEcCCCCCcCCCCCeecceEeecCCCCCceeEEehhhHHHHHHHHHhcCCCCC
Confidence 34444555553 459999999999754321 1323 3666554 5777888999999998875 244
Q ss_pred ceeEEEecceec-CCCCCCccccccccceeeeeccccHHHHHHHHHHHHHHHHhhhh
Q 013865 315 GRVFETGPVFRA-EDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLN 370 (435)
Q Consensus 315 ~rVfeIgp~FR~-E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~ 370 (435)
+.+|+=....|. |.+-++.|.-=--|-|||..+.. -+--++.+.+.+..|+..+.
T Consensus 90 eGlytdMnAiR~De~~ldn~HS~yVDQWDWEkvI~~-~~R~~~~Lk~tV~~Iy~~ik 145 (330)
T TIGR00669 90 EGLFVHMKALRPDEDRLDPLHSVYVDQWDWEKVMPD-GERNFAYLKSTVEAIYAAIR 145 (330)
T ss_pred ceeeeccccccCCccccCccceeeeccccHHHhcCc-ccccHHHHHHHHHHHHHHHH
Confidence 579998888886 55358889877788999988864 45567777777777776664
No 215
>PRK13150 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=56.92 E-value=1.6e+02 Score=27.03 Aligned_cols=72 Identities=15% Similarity=0.134 Sum_probs=50.7
Q ss_pred CCCCEEEEEEEEe--eeecCCC--ceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCcccC
Q 013865 102 LKDQEVLIRGRVH--TTRPVGN--KLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIK 177 (435)
Q Consensus 102 ~~g~~V~v~GrV~--~~R~~G~--kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~~~~ 177 (435)
..|+.|+|.|.|. ++...+. .+.| .|.|+..+|.|....- + + ..+.-|.-|.++|.+...+
T Consensus 55 ~~g~~iRvgG~V~~GSv~r~~~~~~v~F-~vtD~~~~v~V~Y~Gi---l-P------DlFrEG~gVVveG~~~~~g---- 119 (159)
T PRK13150 55 AVGQRLRVGGMVMPGSVRRDPDSLKVNF-SLYDAEGSVTVSYEGI---L-P------DLFREGQGVVVQGTLEKGN---- 119 (159)
T ss_pred CCCCEEEEeeEEeCCcEEECCCCcEEEE-EEEcCCcEEEEEEecc---C-C------ccccCCCeEEEEEEECCCC----
Confidence 4689999999998 6665432 4565 8899999999887642 1 2 2467789999999985321
Q ss_pred CCceeEEEEEeEEEEeecC
Q 013865 178 GATQQVEVQIKKLYCVSRA 196 (435)
Q Consensus 178 ~~t~~lEi~v~~i~vls~~ 196 (435)
-++++ .||.+|
T Consensus 120 ------~F~A~--evLAKh 130 (159)
T PRK13150 120 ------HVLAH--EVLAKH 130 (159)
T ss_pred ------EEEEe--EEEeCC
Confidence 13333 578888
No 216
>PRK13165 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=56.30 E-value=1.6e+02 Score=26.97 Aligned_cols=58 Identities=16% Similarity=0.139 Sum_probs=43.6
Q ss_pred CCCCEEEEEEEEe--eeecCCC--ceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEe
Q 013865 102 LKDQEVLIRGRVH--TTRPVGN--KLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVS 170 (435)
Q Consensus 102 ~~g~~V~v~GrV~--~~R~~G~--kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~ 170 (435)
..|+.|+|.|.|. ++...+. .+.| .|.|+..+|.|....- + + ..+.-|.-|.|+|.+.
T Consensus 55 ~~g~~iRvgG~V~~GSi~r~~~~l~v~F-~vtD~~~~v~V~Y~Gi---l-P------DlFrEG~gVVveG~~~ 116 (160)
T PRK13165 55 EVGQRLRVGGMVMPGSVQRDPNSLKVSF-TLYDAGGSVTVTYEGI---L-P------DLFREGQGIVAQGVLE 116 (160)
T ss_pred CCCCEEEEeeEEeCCcEEECCCCeEEEE-EEEcCCeEEEEEEccc---C-C------ccccCCCeEEEEEEEC
Confidence 4689999999998 6666554 3465 7889999999887632 1 2 2466799999999885
No 217
>cd05694 S1_Rrp5_repeat_hs2_sc2 S1_Rrp5_repeat_hs2_sc2: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 2 (hs2) and S. cerevisiae S1 repeat 2 (sc2). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=55.50 E-value=33 Score=26.89 Aligned_cols=48 Identities=10% Similarity=0.160 Sum_probs=34.2
Q ss_pred EEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEE
Q 013865 108 LIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIG 167 (435)
Q Consensus 108 ~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G 167 (435)
.|.|+|.++..+| +|+++- .+.+-+.+..+. ++. -..+..|+.+.+.=
T Consensus 7 ~v~g~V~si~d~G---~~v~~g--~~gv~Gfl~~~~--~~~-----~~~~~~Gq~v~~~V 54 (74)
T cd05694 7 VLSGCVSSVEDHG---YILDIG--IPGTTGFLPKKD--AGN-----FSKLKVGQLLLCVV 54 (74)
T ss_pred EEEEEEEEEeCCE---EEEEeC--CCCcEEEEEHHH--CCc-----ccccCCCCEEEEEE
Confidence 3899999999999 899992 223677776542 221 15689999888764
No 218
>PF13567 DUF4131: Domain of unknown function (DUF4131)
Probab=55.37 E-value=88 Score=26.98 Aligned_cols=60 Identities=18% Similarity=0.293 Sum_probs=39.3
Q ss_pred CCEEEEEEEEeeeecC-CCceEEEEEE------eC-----CeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEec
Q 013865 104 DQEVLIRGRVHTTRPV-GNKLAFVVVR------ER-----VSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSV 171 (435)
Q Consensus 104 g~~V~v~GrV~~~R~~-G~kl~Fl~Lr------d~-----~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~ 171 (435)
|+.+++.|.|.+.... +....|. ++ .+ .++|++.+..... ..+..||.+.++|.+..
T Consensus 75 ~~~~~v~g~V~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~----------~~l~~Gd~i~~~g~l~~ 143 (176)
T PF13567_consen 75 GKEVTVQGTVESVPQIDGRGQRFT-LRVERVLAGGNWIPVSGKILLYLPKDSQ----------PRLQPGDRIRVRGKLKP 143 (176)
T ss_pred CceEEEEEEEcccccccCceEEEE-EEEEEeeccccccccceeeEEEeccccc----------cccCCCCEEEEEEEEec
Confidence 8899999999887554 3233232 32 11 2467776664321 15899999999999987
Q ss_pred CCc
Q 013865 172 PDV 174 (435)
Q Consensus 172 ~~~ 174 (435)
|..
T Consensus 144 ~~~ 146 (176)
T PF13567_consen 144 PSG 146 (176)
T ss_pred CCC
Confidence 653
No 219
>TIGR01405 polC_Gram_pos DNA polymerase III, alpha chain, Gram-positive type. The N-terminal region of about 200 amino acids is rich in low-complexity sequence, poorly alignable, and not included n this model.
Probab=53.49 E-value=1.1e+02 Score=36.91 Aligned_cols=81 Identities=15% Similarity=0.210 Sum_probs=56.3
Q ss_pred CCEEEEEEEEeeeec----CCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCcccCCC
Q 013865 104 DQEVLIRGRVHTTRP----VGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGA 179 (435)
Q Consensus 104 g~~V~v~GrV~~~R~----~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~~~~~~ 179 (435)
+..|+|.|.|-.+-. .|+.+.-+.|.|.+..|-|....... ...+....|..|+.|.|.|.+....-
T Consensus 7 ~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~d~~~s~~~k~f~~~~----~~~~~~~~~~~g~~~~~~g~~~~d~~----- 77 (1213)
T TIGR01405 7 ENRVKIEGYIFKIEIKELKSGRTLLKIKVTDYTDSLILKKFLKSE----EDPEKFDGIKIGKWVRARGKIELDNF----- 77 (1213)
T ss_pred CCeEEEEEEEEEEEeEeccCCCEEEEEEEEcCCCCEEEEEecccc----cchHHHhhcCCCcEEEEEEEEeccCC-----
Confidence 568999999987532 46666668899999888887765322 11234477999999999999875421
Q ss_pred ceeEEEEEeEEEEe
Q 013865 180 TQQVEVQIKKLYCV 193 (435)
Q Consensus 180 t~~lEi~v~~i~vl 193 (435)
.+++.+.+..|..+
T Consensus 78 ~~~~~~~~~~~~~~ 91 (1213)
T TIGR01405 78 SRDLQMIIKDIEEI 91 (1213)
T ss_pred CCceEEEeeeeeec
Confidence 24566677666554
No 220
>PF11736 DUF3299: Protein of unknown function (DUF3299); InterPro: IPR021727 This is a family of bacterial proteins of unknown function.
Probab=53.47 E-value=1.4e+02 Score=26.94 Aligned_cols=85 Identities=18% Similarity=0.094 Sum_probs=48.4
Q ss_pred cCCCCCCEEEEEEEEeeeecCCCce-EEEEEEeCCe--------EEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEE
Q 013865 99 NGSLKDQEVLIRGRVHTTRPVGNKL-AFVVVRERVS--------TVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVV 169 (435)
Q Consensus 99 ~~~~~g~~V~v~GrV~~~R~~G~kl-~Fl~Lrd~~~--------~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v 169 (435)
...+.|+.|+|.|+|.-.-..+.++ -|+.+.+-+. -=|+|.-.....+ ..-..-+-|.|+|++
T Consensus 50 v~~L~Gk~V~i~Gf~vPle~~~~~v~eFlLvP~~gaC~h~PpPppNqiV~V~~~~~~--------~~~~~~~pv~V~G~l 121 (146)
T PF11736_consen 50 VKALDGKQVRIPGFMVPLEQEEGKVTEFLLVPYFGACIHVPPPPPNQIVHVKMPKPI--------PVDSLYDPVWVEGTL 121 (146)
T ss_pred hHHhCCCEEEEeeEEEeeccCCCcEEEEEEeccCCcCcCCCCCCCccEEEEEeCCCc--------cccccceeEEEEEEE
Confidence 3457799999999999988654333 6887777542 1244433211111 011234689999999
Q ss_pred ecCCcccCCCceeEEEEEeEEE
Q 013865 170 SVPDVEIKGATQQVEVQIKKLY 191 (435)
Q Consensus 170 ~~~~~~~~~~t~~lEi~v~~i~ 191 (435)
........-.+..+.+.+.+|.
T Consensus 122 ~~~~~~~~~~~~~Y~m~a~~v~ 143 (146)
T PF11736_consen 122 KVERSSSDLGTSGYSMDADSVE 143 (146)
T ss_pred EeccccchheeEEEEEEeeEEE
Confidence 7543221112234666666554
No 221
>cd05707 S1_Rrp5_repeat_sc11 S1_Rrp5_repeat_sc11: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes S. cerevisiae S1 repeat 11 (sc11). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=51.96 E-value=41 Score=25.31 Aligned_cols=51 Identities=20% Similarity=0.305 Sum_probs=34.7
Q ss_pred EEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHH-HHHHHhcCCCCcEEEEE
Q 013865 108 LIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKE-MVRFVRSLSNESIVDVI 166 (435)
Q Consensus 108 ~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~-~~k~~~~l~~esiV~V~ 166 (435)
.+.|+|.++...| +|+.|-++ +-+.+..+. ++.. ..+....++.|+.|.+.
T Consensus 3 ~v~g~V~~v~~~G---v~V~l~~~---~~G~v~~s~--l~~~~~~~~~~~~~~Gd~v~~~ 54 (68)
T cd05707 3 VVRGFVKNIANNG---VFVTLGRG---VDARVRVSE--LSDSYLKDWKKRFKVGQLVKGK 54 (68)
T ss_pred EEEEEEEEEECcc---EEEEeCCC---CEEEEEHHH--CCchhhcCHhhccCCCCEEEEE
Confidence 3799999999988 89999653 677776542 2221 11233458899988875
No 222
>COG2965 PriB Primosomal replication protein N [DNA replication, recombination, and repair]
Probab=49.54 E-value=71 Score=26.96 Aligned_cols=73 Identities=11% Similarity=0.162 Sum_probs=41.8
Q ss_pred CCCceEEEEEEeCC------eEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCcccCCCceeEEEEEeEEEE
Q 013865 119 VGNKLAFVVVRERV------STVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYC 192 (435)
Q Consensus 119 ~G~kl~Fl~Lrd~~------~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~~~~~~t~~lEi~v~~i~v 192 (435)
+|-..|=+.|...+ ..=|+-|.-.--..+.+...|..+|..|+.|.|.|.+..-.+. +.-..+-|+...|+.
T Consensus 24 sGIphc~f~Lehrs~q~Eag~~RQv~~~mpv~vsG~qa~~lt~~i~~Gs~i~v~GFla~~~~~--sg~~~lvlha~qi~~ 101 (103)
T COG2965 24 SGIPHCQFVLEHRSWQEEAGFQRQVWCEMPVRVSGRQAEELTQSITVGSYILVVGFLACHKRR--SGLSKLVLHAEQIEF 101 (103)
T ss_pred CCCeeEEEEEeecchhhhCCcceeEEEEccEEeechhhhhhhhccccccEEEEEEEEEeeccc--CCccEEEEEeeEEEe
Confidence 35445555565432 3445554421111234445577789999999999999753221 112457777777765
Q ss_pred e
Q 013865 193 V 193 (435)
Q Consensus 193 l 193 (435)
+
T Consensus 102 i 102 (103)
T COG2965 102 I 102 (103)
T ss_pred c
Confidence 4
No 223
>PRK00448 polC DNA polymerase III PolC; Validated
Probab=48.19 E-value=1.5e+02 Score=36.54 Aligned_cols=90 Identities=14% Similarity=0.247 Sum_probs=58.6
Q ss_pred EEeccccCCCCCCEEEEEEEEeee--e--cCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEE
Q 013865 93 TVVGALNGSLKDQEVLIRGRVHTT--R--PVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGV 168 (435)
Q Consensus 93 ~~i~~l~~~~~g~~V~v~GrV~~~--R--~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~ 168 (435)
+.+.++.. .+..|+|.|.|-.+ | ..|+.+.=+.|.|.++.|-|....... +..+....|+.|+.|.|.|.
T Consensus 227 ~~~~~i~~--~~~~v~i~G~if~~e~~~~k~~~~~~~~~~td~~~s~~~k~f~~~~----~~~~~~~~~~~g~~v~~~g~ 300 (1437)
T PRK00448 227 TPMKEINE--EERRVVVEGYVFKVEIKELKSGRHILTFKITDYTSSIIVKKFSRDK----EDLKKFDEIKKGDWVKVRGS 300 (1437)
T ss_pred ccHHHhhc--cCCeEEEEEEEEEEEEEeccCCCEEEEEEEEcCCCCEEEEEEecCc----chhHHHhcCCCCCEEEEEEE
Confidence 45555542 35689999999886 2 245455557788988877776665322 12244578999999999999
Q ss_pred EecCCcccCCCceeEEEEEeEEEEe
Q 013865 169 VSVPDVEIKGATQQVEVQIKKLYCV 193 (435)
Q Consensus 169 v~~~~~~~~~~t~~lEi~v~~i~vl 193 (435)
+....- .+++.+.+..|..+
T Consensus 301 ~~~d~~-----~~~~~~~~~~~~~~ 320 (1437)
T PRK00448 301 VQNDTF-----TRDLVMNAQDINEI 320 (1437)
T ss_pred EeccCC-----CCceEEEeeeeeec
Confidence 975321 23566666665543
No 224
>PF01411 tRNA-synt_2c: tRNA synthetases class II (A); InterPro: IPR018164 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Alanyl-tRNA synthetase (6.1.1.7 from EC) is an alpha4 tetramer that belongs to class IIc. ; GO: 0000166 nucleotide binding, 0004813 alanine-tRNA ligase activity, 0005524 ATP binding, 0006419 alanyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3HY1_A 3HXZ_C 3HXY_A 3HXU_A 3HY0_B 3HXV_A 3HXX_A 3HXW_A 2E1B_A 2ZZG_B ....
Probab=47.30 E-value=68 Score=35.19 Aligned_cols=96 Identities=14% Similarity=0.191 Sum_probs=53.0
Q ss_pred HHHHHHHHhhcCCeEEeeCceeeccCCCCCcceeEeccCCCceeeccChHHHHhhhccCC-----CceeEEEecceecC-
Q 013865 254 VGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGD-----FGRVFETGPVFRAE- 327 (435)
Q Consensus 254 i~~~~r~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~~~~~~~L~~Spql~lq~~i~~g-----~~rVfeIgp~FR~E- 327 (435)
|-+.|-+||.++|..-|..--|++. -+.+++++.|+--..|-.+.|+ ..|+-..-+|.|.-
T Consensus 2 iR~~fl~fF~~~gH~~v~s~~lvp~-------------~d~~llf~~Agm~~fkp~f~g~~~~p~~~r~~~~Q~CiR~~G 68 (552)
T PF01411_consen 2 IREKFLDFFEKKGHTIVPSSSLVPR-------------WDPTLLFTNAGMNQFKPYFLGGEVPPPANRLVSSQKCIRTGG 68 (552)
T ss_dssp HHHHHHHHHHTTT-EEE----SS-T-------------T-TTBSS--SGGGGGCCCCTTSSS--SSSCEEEEEEEE-EET
T ss_pred HHHHHHHHHHHCCCEEeccCCcccC-------------CCCCceeeHhhHHHHHHHhcCCCCCCCCCcccccceeeccCC
Confidence 4567788999999888776555431 1223333333333333233333 47999999999987
Q ss_pred ---C----CCCCccccccccceeeeeccccH-HHHHHHHHHHHH
Q 013865 328 ---D----SYTHRHLCEFTGLDVEMEIKKHY-SEVMDIVDRLFV 363 (435)
Q Consensus 328 ---~----s~t~rHl~EFt~lE~e~a~~~~~-~d~m~~~e~li~ 363 (435)
+ ..|.||++=|.||-- .+|.+.+ ++.+.++-+++.
T Consensus 69 khnDld~VG~t~rH~T~FEMlGn-~sfgdYfK~eai~~awe~lt 111 (552)
T PF01411_consen 69 KHNDLDNVGRTGRHHTFFEMLGN-FSFGDYFKEEAIEYAWEFLT 111 (552)
T ss_dssp TEECGGGTTTSSS--SEEEEEEE-EEECSS-HHHHHHHHHHHHH
T ss_pred CcchhhhcCCCceEeeehhhccc-cccccccHHHHHHHHHHHHH
Confidence 2 358999999999865 5665432 456666666665
No 225
>COG3689 Predicted membrane protein [Function unknown]
Probab=46.72 E-value=49 Score=32.73 Aligned_cols=96 Identities=10% Similarity=0.135 Sum_probs=59.5
Q ss_pred cCCCCCCEEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCcccCC
Q 013865 99 NGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKG 178 (435)
Q Consensus 99 ~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~~~~~ 178 (435)
.++..|++|.+.|.|.+=-..+++ -++..| .+-+=|++++...+.--++- --..++..++|.|+|++....-+. .
T Consensus 170 pdef~Gk~Ie~tGFVy~~~~~~~N-~lflaR--FgiicC~ADa~vygl~v~~~-~~~~y~ndtWltvkGtl~~e~~~~-~ 244 (271)
T COG3689 170 PDEFAGKKIEFTGFVYNDESFPKN-YLFLAR--FGIICCAADAGVYGLLVELD-NQTDYKNDTWLTVKGTLSSEYLSD-F 244 (271)
T ss_pred chhhcCceEEEEEEEECCCCCCcc-eeehhh--hheeeeeccceeEEEEEEcc-ccccCCCCceEEEEeEEEeeecCc-h
Confidence 356789999999999996666655 333444 44555666544322100000 124689999999999997432111 1
Q ss_pred CceeEEEEEeEEEEeecC-CCC
Q 013865 179 ATQQVEVQIKKLYCVSRA-AKT 199 (435)
Q Consensus 179 ~t~~lEi~v~~i~vls~~-~~l 199 (435)
.....-|++.+++++.+. .|+
T Consensus 245 ~~~ipvi~v~sv~~I~kP~nPY 266 (271)
T COG3689 245 KKRIPVIEVDSVEVIPKPANPY 266 (271)
T ss_pred hhcCcEEEeeeeeecCCCCCCc
Confidence 123478999999998765 443
No 226
>KOG2298 consensus Glycyl-tRNA synthetase and related class II tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=45.49 E-value=5 Score=42.66 Aligned_cols=29 Identities=31% Similarity=0.298 Sum_probs=23.1
Q ss_pred eEEEecceecCCC--CCCccccccccceeee
Q 013865 317 VFETGPVFRAEDS--YTHRHLCEFTGLDVEM 345 (435)
Q Consensus 317 VfeIgp~FR~E~s--~t~rHl~EFt~lE~e~ 345 (435)
+-+||.+||||=| .+.-+..||||.|+|-
T Consensus 212 ~AqiG~~fRNEISpRsGLlRvrEF~maEIEH 242 (599)
T KOG2298|consen 212 SAQIGKSFRNEISPRSGLLRVREFTMAEIEH 242 (599)
T ss_pred HHHhchHhhhccCcccCceeEEEeehHHhhc
Confidence 3479999999953 3566889999999874
No 227
>cd05703 S1_Rrp5_repeat_hs12_sc9 S1_Rrp5_repeat_hs12_sc9: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 12 (hs12) and S. cerevisiae S1 repeat 9 (sc9). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=45.34 E-value=48 Score=25.74 Aligned_cols=54 Identities=7% Similarity=-0.028 Sum_probs=36.8
Q ss_pred EEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCc-HHHHHHHhcCCCCcEEEEEE
Q 013865 108 LIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVS-KEMVRFVRSLSNESIVDVIG 167 (435)
Q Consensus 108 ~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s-~~~~k~~~~l~~esiV~V~G 167 (435)
.|.|.|.++-..| +|+.|.++ |.+.+....-.-+ ...-++.+.++.|+.|.+.=
T Consensus 3 ~V~g~V~~i~~~g---~~V~l~~~---i~G~i~~~~ls~~~~~~~~~~~~~~vG~~v~~kV 57 (73)
T cd05703 3 EVTGFVNNVSKEF---VWLTISPD---VKGRIPLLDLSDDVSVLEHPEKKFPIGQALKAKV 57 (73)
T ss_pred EEEEEEEEEeCCE---EEEEeCCC---cEEEEEHHHcCCccccccCHHHhCCCCCEEEEEE
Confidence 3789999998887 89999553 7888875421101 11224567799999988763
No 228
>PRK06253 O-phosphoseryl-tRNA synthetase; Reviewed
Probab=45.02 E-value=27 Score=37.91 Aligned_cols=50 Identities=12% Similarity=0.224 Sum_probs=33.4
Q ss_pred eeEEEecceecCCCCCCccccccccceeeeec-cccHHHHHHHHHHHHHHH
Q 013865 316 RVFETGPVFRAEDSYTHRHLCEFTGLDVEMEI-KKHYSEVMDIVDRLFVTI 365 (435)
Q Consensus 316 rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~-~~~~~d~m~~~e~li~~i 365 (435)
|+||||+|||.+.....+|+.-+.+...-..- .-++.|+..+++.|+..+
T Consensus 210 RLFEIGRVFr~d~~eE~t~La~llsGs~W~~~e~vDFfDlKGiLE~LL~~L 260 (529)
T PRK06253 210 KLFSIDRCFRREQREDASRLMTYHSASCVIADEDVTVDDGKAVAEGLLSQF 260 (529)
T ss_pred EEEEEeeEEecCCccchhheeEEEEccccccCCCCCHHHHHHHHHHHHHHc
Confidence 99999999988632245677666555321111 114889999999998764
No 229
>PRK07218 replication factor A; Provisional
Probab=44.72 E-value=1.2e+02 Score=32.15 Aligned_cols=83 Identities=20% Similarity=0.133 Sum_probs=53.7
Q ss_pred eEEeccccCCCCCCEEEEEEEEeeee-----cCC--CceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEE
Q 013865 92 WTVVGALNGSLKDQEVLIRGRVHTTR-----PVG--NKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVD 164 (435)
Q Consensus 92 ~~~i~~l~~~~~g~~V~v~GrV~~~R-----~~G--~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~ 164 (435)
-.+|++|.+. ++.|.|.|||-++- ..| ..+.=+.|-|.+++|.+++=.. ..|..||+|.
T Consensus 58 ~~kI~Di~~~--~~~V~v~~kVl~i~~rt~r~dg~~g~v~~~~igDeTG~Ir~tlW~~------------~~l~~Gdvv~ 123 (423)
T PRK07218 58 SKDIKELSTD--DKNVTVTGRVLTIGERSIRYQGDDHVIYEGILADETGTISYTAWKD------------FGLSPGDTVT 123 (423)
T ss_pred CccHhhCCCC--CceeEEEEEEEEecceeEecCCCceEEEEEEEECCCCeEEEEEECC------------CCCCCCCEEE
Confidence 3567777654 57899999999882 112 1455556667777777766431 1399999999
Q ss_pred EEEEEecCCcccCCCceeEEEEEeEEEEee
Q 013865 165 VIGVVSVPDVEIKGATQQVEVQIKKLYCVS 194 (435)
Q Consensus 165 V~G~v~~~~~~~~~~t~~lEi~v~~i~vls 194 (435)
|.+.....- .+.++|.+.+-..+.
T Consensus 124 I~na~vre~------~g~~el~ig~~t~I~ 147 (423)
T PRK07218 124 IGNAGVREW------DGRPELNIGESTTVS 147 (423)
T ss_pred EeccEeecc------CCceEEeccCcceEE
Confidence 998654321 245888876544443
No 230
>PRK00036 primosomal replication protein N; Reviewed
Probab=44.42 E-value=91 Score=26.70 Aligned_cols=52 Identities=10% Similarity=0.177 Sum_probs=37.6
Q ss_pred eEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCcccCCCceeEEEEEeEEEEeec
Q 013865 133 STVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSR 195 (435)
Q Consensus 133 ~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~~~~~~t~~lEi~v~~i~vls~ 195 (435)
..||+++.. ++.+....++.|+.|.|+|.+.... . ....+=||++.|..+..
T Consensus 47 ~~i~ava~G-------~~a~~~~~l~~Gs~v~v~GFLa~~~--~--~~~~LVLHi~~Ie~i~~ 98 (107)
T PRK00036 47 LTISAVALG-------DLALLLADTPLGTEMQVQGFLAPAR--K--DSVKVKLHLQQARRIAG 98 (107)
T ss_pred EEEEEEEEh-------hHHHHhcccCCCCEEEEEEEEEECC--C--CCCcEEEEhHHeEEccc
Confidence 467787763 3455566799999999999998621 1 12458899999988744
No 231
>cd04486 YhcR_OBF_like YhcR_OBF_like: A subfamily of OB-fold domains similar to the OB folds of Bacillus subtilis YhcR. YhcR is a sugar-nonspecific nuclease, which is active in the presence of Ca2+ and Mn2+. It cleaves RNA endonucleolytically, producing 3'-monophosphate nucleosides. YhcR appears to be the major Ca2+ activated nuclease of B. subtilis. YhcR may be localized in the cell wall.
Probab=43.82 E-value=1.6e+02 Score=23.32 Aligned_cols=54 Identities=17% Similarity=0.200 Sum_probs=31.4
Q ss_pred EEEEEEeeeecCCCceEEEEEEeCC-----eEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEec
Q 013865 108 LIRGRVHTTRPVGNKLAFVVVRERV-----STVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSV 171 (435)
Q Consensus 108 ~v~GrV~~~R~~G~kl~Fl~Lrd~~-----~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~ 171 (435)
+|.|-|......+..-.|+ |.|.. .+-..+.-.... ...+..||.|.|+|+|..
T Consensus 1 ~v~GvVTa~~~~~~~~Gff-iQd~~~d~~~~ts~gifV~~~~---------~~~~~~Gd~V~vtG~v~e 59 (78)
T cd04486 1 TVEGVVTAVFSGGGLGGFY-IQDEDGDGDPATSEGIFVYTGS---------GADVAVGDLVRVTGTVTE 59 (78)
T ss_pred CeEEEEEEEcCCCCcCEEE-EEcCCCCCCCcccceEEEecCC---------CCCCCCCCEEEEEEEEEe
Confidence 3678888877643112455 66541 122333221110 246899999999999975
No 232
>PRK07218 replication factor A; Provisional
Probab=43.36 E-value=2.4e+02 Score=29.92 Aligned_cols=76 Identities=12% Similarity=0.091 Sum_probs=49.3
Q ss_pred CCEEEEEEEEeee--e----cCC-CceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCccc
Q 013865 104 DQEVLIRGRVHTT--R----PVG-NKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEI 176 (435)
Q Consensus 104 g~~V~v~GrV~~~--R----~~G-~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~~~ 176 (435)
+..|+|.|+|..+ | .-| ..+.=..|-|.+++|.+++=.. ...|..|++|.|.|....-
T Consensus 172 ~~~V~v~g~Vl~~~~r~f~~~dg~~~v~~giigDeTG~Ir~tlW~~-----------~~~l~~Gd~v~I~na~v~e---- 236 (423)
T PRK07218 172 DRGVNVEARVLELEHREIDGRDGETTILSGVLADETGRLPFTDWDP-----------LPEIEIGASIRIEDAYVRE---- 236 (423)
T ss_pred CCceEEEEEEEEecceeEEcCCCCeEEEEEEEECCCceEEEEEecc-----------cccCCCCCEEEEeeeEEec----
Confidence 4459999999977 1 112 1333345667777777776431 1258999999999977642
Q ss_pred CCCceeEEEEEeEEEEeecC
Q 013865 177 KGATQQVEVQIKKLYCVSRA 196 (435)
Q Consensus 177 ~~~t~~lEi~v~~i~vls~~ 196 (435)
-.|.+||.+.+-.-+...
T Consensus 237 --~~G~~elnv~~~t~I~~~ 254 (423)
T PRK07218 237 --FRGVPSVNVSEFTTVEAL 254 (423)
T ss_pred --cCCeEEEEECCceEEEEC
Confidence 125699999865555443
No 233
>COG2502 AsnA Asparagine synthetase A [Amino acid transport and metabolism]
Probab=41.69 E-value=3.7e+02 Score=26.81 Aligned_cols=117 Identities=16% Similarity=0.177 Sum_probs=74.8
Q ss_pred HHHHHHHHHhh-cCCeEEeeCceeeccCCC-----CCcc-e--eEeccCCC-ceeeccChHHHHhhhccC-C---CceeE
Q 013865 253 QVGNIFRQFLL-SENFVEIHTPKLIAGSSE-----GGSA-V--FRLDYKGQ-SACLAQSPQLHKQMSICG-D---FGRVF 318 (435)
Q Consensus 253 ~i~~~~r~fl~-~~gF~EV~TP~l~~~~~e-----gga~-~--F~v~~~~~-~~~L~~Spql~lq~~i~~-g---~~rVf 318 (435)
.+-+.|...|. ..|.+||..|+|...... .|.+ + |.+.-... .+-.-.|---||.+.++- | -+..|
T Consensus 14 fvKn~Ft~~l~~~L~lieVq~Pils~vg~G~qDnLsg~ekaVsv~vk~~p~a~fEvVhSLAKWKR~tL~r~~f~~~eGly 93 (330)
T COG2502 14 FVKNTFTQHLEERLGLIEVQAPILSRVGDGLQDNLSGTEKAVSVKVKKLPDATFEVVHSLAKWKRHTLARYGFSAGEGLY 93 (330)
T ss_pred HHHHHHHHHHHHhcCeEEeecceEeccCCcccccccccccceEEEEeecCCchhhhhHHHHHHHHHHHHhcCCcCCCcee
Confidence 34455555554 469999999999743211 1333 2 44433332 244557777888877642 3 36899
Q ss_pred EEecceec-CCCCCCccccccccceeeeeccccHHHHHHHHHHHHHHHHhhhh
Q 013865 319 ETGPVFRA-EDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLN 370 (435)
Q Consensus 319 eIgp~FR~-E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~ 370 (435)
.=....|. |++-+..|.-=--+-|||...-+ -+-.+..+.+.+..|...+.
T Consensus 94 thM~AlRpDeD~ld~~HSvYVDQWDWEkvi~~-g~rNl~yLK~tV~kIY~~ir 145 (330)
T COG2502 94 THMKALRPDEDRLDPIHSVYVDQWDWEKVIPD-GDRNLAYLKSTVEKIYAAIR 145 (330)
T ss_pred eechhcCCCcccccchheEEecccchhhhcCC-ccccHHHHHHHHHHHHHHHH
Confidence 99999996 66678889777778888877654 34556666666666666554
No 234
>cd05705 S1_Rrp5_repeat_hs14 S1_Rrp5_repeat_hs14: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 14 (hs14). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=40.83 E-value=78 Score=24.68 Aligned_cols=51 Identities=18% Similarity=0.307 Sum_probs=33.6
Q ss_pred EEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcH----HHHHHHhcCCCCcEEEEE
Q 013865 108 LIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSK----EMVRFVRSLSNESIVDVI 166 (435)
Q Consensus 108 ~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~----~~~k~~~~l~~esiV~V~ 166 (435)
.|.|.|.++...| +|++|.. .+.+.+.... +|. ...++.+.++.|+.|.++
T Consensus 6 ~V~g~V~~i~~~G---~fV~l~~---~v~G~v~~~~--ls~~~~~~~~~~~~~~~~G~~v~~k 60 (74)
T cd05705 6 LLRGYVSSVTKQG---VFFRLSS---SIVGRVLFQN--VTKYFVSDPSLYNKYLPEGKLLTAK 60 (74)
T ss_pred EEEEEEEEEeCCc---EEEEeCC---CCEEEEEHHH--ccCccccChhhHhcccCCCCEEEEE
Confidence 4789999999888 8999954 4566665321 111 111234678999998865
No 235
>cd05698 S1_Rrp5_repeat_hs6_sc5 S1_Rrp5_repeat_hs6_sc5: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 6 (hs6) and S. cerevisiae S1 repeat 5 (sc5). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=40.42 E-value=65 Score=24.19 Aligned_cols=50 Identities=16% Similarity=0.260 Sum_probs=34.5
Q ss_pred EEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHH-HHHhcCCCCcEEEEE
Q 013865 109 IRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMV-RFVRSLSNESIVDVI 166 (435)
Q Consensus 109 v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~-k~~~~l~~esiV~V~ 166 (435)
+.|+|.++...| +|+.|-++ +++++..+. .+.+-. .....+..|+.|.|.
T Consensus 4 ~~g~V~~v~~~G---~~V~l~~~---~~gli~~s~--l~~~~~~~~~~~~~~G~~i~v~ 54 (70)
T cd05698 4 THGTIVKVKPNG---CIVSFYNN---VKGFLPKSE--LSEAFIKDPEEHFRVGQVVKVK 54 (70)
T ss_pred EEEEEEEEecCc---EEEEECCC---CEEEEEHHH--cChhhcCCHHHcccCCCEEEEE
Confidence 789999999888 89999542 788887643 222111 122458889998886
No 236
>cd05687 S1_RPS1_repeat_ec1_hs1 S1_RPS1_repeat_ec1_hs1: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 1 of the Escherichia coli and Homo sapiens RPS1 (ec1 and hs1, respectively). Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Probab=38.69 E-value=60 Score=24.45 Aligned_cols=51 Identities=12% Similarity=0.126 Sum_probs=32.8
Q ss_pred EEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHH-HHHHHhcCCCCcEEEEE
Q 013865 108 LIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKE-MVRFVRSLSNESIVDVI 166 (435)
Q Consensus 108 ~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~-~~k~~~~l~~esiV~V~ 166 (435)
.|.|.|.++...| +|++|.. .+.+++..+.. +.. .......++.||.|.+.
T Consensus 3 iv~g~V~~i~~~~---~~v~l~~---~~~g~l~~~e~--~~~~~~~~~~~~~~Gd~i~~~ 54 (70)
T cd05687 3 IVKGTVVSVDDDE---VLVDIGY---KSEGIIPISEF--SDDPIENGEDEVKVGDEVEVY 54 (70)
T ss_pred EEEEEEEEEeCCE---EEEEeCC---CceEEEEHHHh--CccccCCHhHcCCCCCEEEEE
Confidence 3689999998876 8999943 35777765421 111 11123458899998876
No 237
>KOG1637 consensus Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=37.73 E-value=52 Score=35.22 Aligned_cols=93 Identities=18% Similarity=0.270 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHhhcCCeEEeeCceeeccC---CCCC-----cceeEecc----CC--------CceeeccChHHHHhh
Q 013865 249 RIQSQVGNIFRQFLLSENFVEIHTPKLIAGS---SEGG-----SAVFRLDY----KG--------QSACLAQSPQLHKQM 308 (435)
Q Consensus 249 ~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~---~egg-----a~~F~v~~----~~--------~~~~L~~Spql~lq~ 308 (435)
++...++.++|.=...+||.||-||.|-... .-|. -+.|+++- |+ .-+-.+.-|-=|.++
T Consensus 193 ~iyN~Lv~fir~ey~~rGf~EVitPniy~~~LWe~SGHwqnY~enmF~~e~eke~~~LKPMNCPgHcLmf~~r~rS~reL 272 (560)
T KOG1637|consen 193 RIYNTLVDFIRAEYRKRGFTEVITPNIYNKKLWETSGHWQNYSENMFKFEVEKEEFALKPMNCPGHCLMFAHRDRSYREL 272 (560)
T ss_pred hHHHHHHHHHHHHHHhcCCceecCcchhhhhhhhhccchhhhhhhceeeeechhhhccCccCCCccccccccCCccHhhC
Confidence 5677889999999999999999999886432 1222 12566532 11 111112222223331
Q ss_pred hccCCCceeEEEecceecCCCC---CCccccccccceeeee
Q 013865 309 SICGDFGRVFETGPVFRAEDSY---THRHLCEFTGLDVEME 346 (435)
Q Consensus 309 ~i~~g~~rVfeIgp~FR~E~s~---t~rHl~EFt~lE~e~a 346 (435)
= -|.=.+|+.-|||-|. +.+|+-.|.+=|.-+.
T Consensus 273 P-----lR~aDFg~LHRnE~SGaLsGLTRvRrFqQDDaHIF 308 (560)
T KOG1637|consen 273 P-----LRFADFGVLHRNEASGALSGLTRVRRFQQDDAHIF 308 (560)
T ss_pred C-----ccccCcceeeeccccccccccceeeeecccCceEE
Confidence 1 1444678899999652 5789999999887654
No 238
>PRK01584 alanyl-tRNA synthetase; Provisional
Probab=36.89 E-value=83 Score=34.86 Aligned_cols=98 Identities=16% Similarity=0.217 Sum_probs=57.8
Q ss_pred HHHHHHHHHHhhcCCeEEeeCceeeccCCCCCcceeEeccCCCceeeccChHHHHhhhccC----CCceeEEEecceec-
Q 013865 252 SQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICG----DFGRVFETGPVFRA- 326 (435)
Q Consensus 252 s~i~~~~r~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~~~~~~~L~~Spql~lq~~i~~----g~~rVfeIgp~FR~- 326 (435)
+.|-+.|-+||.++|-..|.+--|++.. +.+++++.|+--..|-.+.| ...|+=..-+|.|.
T Consensus 4 ~eiR~~fl~FF~~kgH~~~~s~slvp~~-------------d~tllftnAGm~~fk~~f~G~~~p~~~r~~~~QkCiR~~ 70 (594)
T PRK01584 4 DELRKKYIDFFKSKGHVEIAGKSLIPEN-------------DPTVLFTTAGMHPLVPYLLGEPHPSGTRLVDVQKCLRTG 70 (594)
T ss_pred HHHHHHHHHHHHhCCCEEcCCCCcCCCC-------------CCCeeeeccchhhhhHHhcCCCCCCCCCccccccccccc
Confidence 4566788899999998888876666421 11122222221111111111 13566677789997
Q ss_pred --CCCCCCccccccccceeeeeccccH--HHHHHHHHHHHHH
Q 013865 327 --EDSYTHRHLCEFTGLDVEMEIKKHY--SEVMDIVDRLFVT 364 (435)
Q Consensus 327 --E~s~t~rHl~EFt~lE~e~a~~~~~--~d~m~~~e~li~~ 364 (435)
|+..|.||++=|.||-- .+|.+ | ++.+.++=+||..
T Consensus 71 Dle~VG~~rHhTfFEMlGn-fSfgd-YfK~eai~~awe~lt~ 110 (594)
T PRK01584 71 DIDEVGDLSHLTFFEMLGN-WSLGA-YFKEESIKYSFEFLTS 110 (594)
T ss_pred cccccCCCcchhHHHhhcc-ccHhh-hhHHHHHHHHHHHhcc
Confidence 44447899998888864 56654 5 5566666555543
No 239
>cd05706 S1_Rrp5_repeat_sc10 S1_Rrp5_repeat_sc10: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes S. cerevisiae S1 repeat 10 (sc10). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=36.79 E-value=93 Score=23.59 Aligned_cols=51 Identities=14% Similarity=0.195 Sum_probs=33.7
Q ss_pred EEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHH-HHHhcCCCCcEEEEE
Q 013865 108 LIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMV-RFVRSLSNESIVDVI 166 (435)
Q Consensus 108 ~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~-k~~~~l~~esiV~V~ 166 (435)
.+.|.|..+...| +|+.|-.+ +++++..+.- +.+.. +....++.|+.|.+.
T Consensus 6 iv~g~V~~v~~~g---i~v~l~~~---~~g~v~~s~l--~~~~~~~~~~~~~~Gd~v~~~ 57 (73)
T cd05706 6 ILPGRVTKVNDRY---VLVQLGNK---VTGPSFITDA--LDDYSEALPYKFKKNDIVRAC 57 (73)
T ss_pred EEEEEEEEEeCCe---EEEEeCCC---cEEEEEhhhc--cCccccccccccCCCCEEEEE
Confidence 3689999998887 89998554 7888876432 21111 123457888888764
No 240
>cd04452 S1_IF2_alpha S1_IF2_alpha: The alpha subunit of translation Initiation Factor 2, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Eukaryotic and archaeal Initiation Factor 2 (e- and aIF2, respectively) are heterotrimeric proteins with three subunits (alpha, beta, and gamma). IF2 plays a crucial role in the process of translation initiation. The IF2 gamma subunit contains a GTP-binding site. The IF2 beta and gamma subunits together are thought to be responsible for binding methionyl-initiator tRNA. The ternary complex consisting of IF2, GTP, and the methionyl-initiator tRNA binds to the small subunit of the ribosome, as part of a pre-initiation complex that scans the mRNA to find the AUG start codon. The IF2-bound GTP is hydrolyzed to GDP when the methionyl-initiator tRNA binds the AUG start codon, at which time the IF2 is released with its bound GDP. The large ribosomal subunit then joins with the small subunit to c
Probab=36.32 E-value=89 Score=23.75 Aligned_cols=53 Identities=15% Similarity=0.177 Sum_probs=34.6
Q ss_pred EEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHH-HHHhcCCCCcEEEEE
Q 013865 108 LIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMV-RFVRSLSNESIVDVI 166 (435)
Q Consensus 108 ~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~-k~~~~l~~esiV~V~ 166 (435)
.+.|.|..+...| +|++|.+.. .+.+++..+. .+.+.+ .....++.|+.|.|.
T Consensus 6 ~~~g~V~~v~~~g---~~v~l~~~~-~~~gll~~s~--l~~~~~~~~~~~~~~Gd~v~vk 59 (76)
T cd04452 6 LVVVTVKSIADMG---AYVSLLEYG-NIEGMILLSE--LSRRRIRSIRKLVKVGRKEVVK 59 (76)
T ss_pred EEEEEEEEEEccE---EEEEEcCCC-CeEEEEEhHH--cCCcccCCHHHeeCCCCEEEEE
Confidence 3689999999988 899997532 2566766442 121111 123458999998876
No 241
>CHL00192 syfB phenylalanyl-tRNA synthetase beta chain; Provisional
Probab=35.10 E-value=96 Score=35.06 Aligned_cols=111 Identities=16% Similarity=0.126 Sum_probs=57.7
Q ss_pred HHHHHHHHHhhcCCeEEeeCceeeccCCCCCcceeEe-ccC-CCceeeccChHHHHhhhccCC------CceeEEEecce
Q 013865 253 QVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRL-DYK-GQSACLAQSPQLHKQMSICGD------FGRVFETGPVF 324 (435)
Q Consensus 253 ~i~~~~r~fl~~~gF~EV~TP~l~~~~~egga~~F~v-~~~-~~~~~L~~Spql~lq~~i~~g------~~rVfeIgp~F 324 (435)
.+.+.+|++|...||.|+-|-.+++... ....+..+ |-. ..--+||.|-=--+=..+... --|+||||.||
T Consensus 402 ~~~~~ir~~L~~~Gf~Evitysf~s~~~-~~~~~i~l~NPiS~e~s~lR~SLlpgLL~~~~~N~~r~~~~~rlFEiG~Vf 480 (704)
T CHL00192 402 NTRDKIRSYLRNLGLTELIHYSLVKQES-FSKNEIKLKNPLIKDYSTLRSSLLPGLIEAVQENLKQGNSTLEGFEIGHVF 480 (704)
T ss_pred HHHHHHHHHHHhCCCceEecccccChhh-cCCCcEEEeCCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCEeEEEeeeeE
Confidence 4556689999999999999999975421 11112222 222 233466655322221122211 23799999999
Q ss_pred ecCCC--CCCccccccccce------eeee--ccccHHHHHHHHHHHHHHH
Q 013865 325 RAEDS--YTHRHLCEFTGLD------VEME--IKKHYSEVMDIVDRLFVTI 365 (435)
Q Consensus 325 R~E~s--~t~rHl~EFt~lE------~e~a--~~~~~~d~m~~~e~li~~i 365 (435)
-..+. ...+|+.=...-. |.-. -. ++.|+-..++.++..+
T Consensus 481 ~~~~~~~~e~~~la~~~~g~~~~~~~w~~~~~~~-dF~d~Kg~le~ll~~l 530 (704)
T CHL00192 481 NLDSSSIIEETELAGGIFGGIDIRSSWSEKAQSL-NWFEAKGIIENFFQKL 530 (704)
T ss_pred cCCCccccccceEEEEEECCCcCccccCCCCCcc-CHHHHHHHHHHHHHHC
Confidence 43221 0112221111111 1000 11 4788888888888654
No 242
>cd04480 RPA1_DBD_A_like RPA1_DBD_A_like: A subgroup of uncharacterized plant OB folds with similarity to the second OB fold, the ssDNA-binding domain (DBD)-A, of human RPA1 (also called RPA70). RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). In addition to DBD-A, RPA1 contains three other OB folds: DBD-B, DBD-C, and RPA1N. The major DNA binding activity of RPA is associated with DBD-A and DBD-B of RPA1. RPA1 DBD-C is involved in trimerization. The ssDNA-binding mechanism is believed to be multistep and to involve conformational change.
Probab=35.05 E-value=2.3e+02 Score=22.44 Aligned_cols=72 Identities=10% Similarity=0.148 Sum_probs=43.1
Q ss_pred EEEEEeeeecCCCceEEEEEEeC-CeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCC-cccCCCceeEEEE
Q 013865 109 IRGRVHTTRPVGNKLAFVVVRER-VSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPD-VEIKGATQQVEVQ 186 (435)
Q Consensus 109 v~GrV~~~R~~G~kl~Fl~Lrd~-~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~-~~~~~~t~~lEi~ 186 (435)
++=|.+.....|..+.++ |.|. |..||+.+... ...+|...|..|.+..+.+.-..+. .+-+...+.++|.
T Consensus 7 ~r~W~~~~~~~~~~~~mi-L~De~G~~I~a~i~~~------~~~~f~~~L~eg~vy~is~f~v~~~~~~y~~~~~~y~I~ 79 (86)
T cd04480 7 LRLWDVYNNASGESLEMV-LVDEKGNRIHATIPKR------LAAKFRPLLKEGKWYTISNFEVAPNTGSYRPTDHPYKIK 79 (86)
T ss_pred EEEEcCcCCCCCcEEEEE-EEcCCCCEEEEEECHH------HHHhhhhhceeCCEEEEeeEEEEcCCCcccccCCcEEEE
Confidence 344444444466555544 5555 55999999743 2346778899999999997544433 2222333445554
Q ss_pred E
Q 013865 187 I 187 (435)
Q Consensus 187 v 187 (435)
.
T Consensus 80 f 80 (86)
T cd04480 80 F 80 (86)
T ss_pred e
Confidence 3
No 243
>PRK06341 single-stranded DNA-binding protein; Provisional
Probab=34.90 E-value=3.7e+02 Score=24.78 Aligned_cols=44 Identities=14% Similarity=0.140 Sum_probs=28.8
Q ss_pred HHhcCCCCcEEEEEEEEecCCc-ccCCCc-eeEEEEEeEE----EEeecC
Q 013865 153 FVRSLSNESIVDVIGVVSVPDV-EIKGAT-QQVEVQIKKL----YCVSRA 196 (435)
Q Consensus 153 ~~~~l~~esiV~V~G~v~~~~~-~~~~~t-~~lEi~v~~i----~vls~~ 196 (435)
..+.|++|+.|.|+|.+....- ...+.+ ..+||.+..| ..|.+.
T Consensus 68 ~~~~LkKG~~V~VeGrL~~r~w~dkdG~~r~~~eIiv~~~~~~l~~l~~~ 117 (166)
T PRK06341 68 AEQYLKKGAKVYIEGQLQTRKWTDQSGVERYSTEVVLQGFNSTLTMLDGR 117 (166)
T ss_pred HHHhcCCCCEEEEEEEEEeCcEECCCCCEEEEEEEEEEecccceEEcccC
Confidence 3467999999999999874321 122333 3488888764 666543
No 244
>PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain. To date, the 3D-structures of the flavoprotein domain of Zea mays (Maize) nitrate reductase [] and of pig NADH:cytochrome b5 reductase [] have been solved. The overall fold is similar to that of ferredoxin:NADP+ reductase []: the FAD-binding domain (N-terminal) has the topology of an anti-parallel beta-barrel, while the NAD(P)-binding domain (C-terminal) has the topology of a classical pyridine dinucleotide-binding fold (i.e. a central parallel beta-sheet flanked by 2 helices on each side).; PDB: 1JB9_A 3LVB_A 3LO8_A 1FRN_A 1FND_A 1BX1_A 1FNC_A 1FNB_A 1BX0_A 1FRQ_A ....
Probab=33.48 E-value=75 Score=25.53 Aligned_cols=62 Identities=13% Similarity=0.113 Sum_probs=38.6
Q ss_pred CCCCCEEEEEEEEeeeecCCCceEEEEEE---eCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEE
Q 013865 101 SLKDQEVLIRGRVHTTRPVGNKLAFVVVR---ERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVV 169 (435)
Q Consensus 101 ~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lr---d~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v 169 (435)
-..|+-|.|+..+.... -..-+.+- +..+.+++.+...... .+-.|+..++.||.|.|.|=.
T Consensus 30 ~~pGQ~v~v~~~~~~~~----~~R~yS~~s~~~~~~~~~~~ik~~~~G---~~S~~L~~l~~Gd~v~i~gP~ 94 (99)
T PF00970_consen 30 FKPGQFVSVRVPINGKQ----VSRPYSPASSPDDKGYLEFAIKRYPNG---RVSRYLHQLKPGDEVEIRGPY 94 (99)
T ss_dssp STTT-EEEEEEEETTEE----EEEEEEBCSSTTSSSEEEEEEEECTTS---HHHHHHHTSCTTSEEEEEEEE
T ss_pred cCcceEEEEEEccCCcc----eecceeEeeecCCCCcEEEEEEeccCC---HHHHHHHhCCCCCEEEEEEcc
Confidence 35599999998833221 11223322 2345788888865332 345678889999999999954
No 245
>cd05697 S1_Rrp5_repeat_hs5 S1_Rrp5_repeat_hs5: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 5 (hs5) and S. cerevisiae S1 repeat 5 (sc5). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=32.57 E-value=1e+02 Score=23.14 Aligned_cols=51 Identities=16% Similarity=0.275 Sum_probs=33.1
Q ss_pred EEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHH-HHHHHhcCCCCcEEEEE
Q 013865 108 LIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKE-MVRFVRSLSNESIVDVI 166 (435)
Q Consensus 108 ~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~-~~k~~~~l~~esiV~V~ 166 (435)
.+.|+|.++...| +|+.|-.+ +-+++..... +.. .......++.|+.|.+.
T Consensus 3 ~v~g~V~~v~~~G---v~V~l~~~---v~g~i~~~~l--~~~~~~~~~~~~~~Gd~i~~~ 54 (69)
T cd05697 3 VVKGTIRKLRPSG---IFVKLSDH---IKGLVPPMHL--ADVRLKHPEKKFKPGLKVKCR 54 (69)
T ss_pred EEEEEEEEEeccE---EEEEecCC---cEEEEEHHHC--CCccccCHHHcCCCCCEEEEE
Confidence 3789999999988 89999643 6677654321 111 11123468889888775
No 246
>cd04472 S1_PNPase S1_PNPase: Polynucleotide phosphorylase (PNPase), ), S1-like RNA-binding domain. PNPase is a polyribonucleotide nucleotidyl transferase that degrades mRNA. It is a trimeric multidomain protein. The C-terminus contains the S1 domain which binds ssRNA. This family is classified based on the S1 domain. PNPase nonspecifically removes the 3' nucleotides from mRNA, but is stalled by double-stranded RNA structures such as a stem-loop. Evidence shows that a minimum of 7-10 unpaired nucleotides at the 3' end, is required for PNPase degradation. It is suggested that PNPase also dephosphorylates the RNA 5' end. This additional activity may regulate the 5'-dependent activity of RNaseE in vivo.
Probab=31.84 E-value=92 Score=22.87 Aligned_cols=51 Identities=25% Similarity=0.283 Sum_probs=32.9
Q ss_pred EEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHH-HHHhcCCCCcEEEEE
Q 013865 108 LIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMV-RFVRSLSNESIVDVI 166 (435)
Q Consensus 108 ~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~-k~~~~l~~esiV~V~ 166 (435)
.+.|+|..+...| +|+.|-++ +.+++..+.. +...+ .....++.||.|.|.
T Consensus 3 ~~~g~V~~v~~~G---~~v~l~~~---~~g~l~~~~l--~~~~~~~~~~~~~~Gd~v~v~ 54 (68)
T cd04472 3 IYEGKVVKIKDFG---AFVEILPG---KDGLVHISEL--SDERVEKVEDVLKVGDEVKVK 54 (68)
T ss_pred EEEEEEEEEEEeE---EEEEeCCC---CEEEEEhHHc--CCccccCHHHccCCCCEEEEE
Confidence 3689999999988 89998654 5666664321 11111 111357889988876
No 247
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=31.64 E-value=81 Score=34.34 Aligned_cols=25 Identities=20% Similarity=0.319 Sum_probs=17.0
Q ss_pred ccccChhHHHHHHHHHHHHHHHHHH
Q 013865 18 SQSISKKAAKKEAAKKAKEERRKEA 42 (435)
Q Consensus 18 ~~~~sk~~lkk~~k~~~k~~kka~~ 42 (435)
...+|-.+.||..|++.|+++|+++
T Consensus 404 ~~~~~~~e~Kk~~kK~kK~~~k~~~ 428 (517)
T PF12569_consen 404 NENMSAAERKKAKKKAKKAAKKAKK 428 (517)
T ss_pred cccCChHHHHHHHHHHHHHHHHHhH
Confidence 3467777777777777777666553
No 248
>COG0072 PheT Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis]
Probab=31.60 E-value=83 Score=35.21 Aligned_cols=113 Identities=18% Similarity=0.123 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHhhcCCeEEeeCceeeccC----CCCCcc-eeEe-cc-CCCceeeccChHHHHhhhccC----C--Cce
Q 013865 250 IQSQVGNIFRQFLLSENFVEIHTPKLIAGS----SEGGSA-VFRL-DY-KGQSACLAQSPQLHKQMSICG----D--FGR 316 (435)
Q Consensus 250 ~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~----~egga~-~F~v-~~-~~~~~~L~~Spql~lq~~i~~----g--~~r 316 (435)
..+...+.+|++|...||.||-|-.|++.. ..++.. ...+ |- .-.--+||.|---.|-.++.- + --|
T Consensus 352 ~~~~~~r~vr~~l~~~G~~Evitysl~s~e~~~~~~~~~~~~~~l~NPiS~e~s~mR~sLlp~LL~~~~~N~~r~~~~~~ 431 (650)
T COG0072 352 PLQKFRRKVRRALVGLGFQEVITYSLTSPEEAKLFGLENDEALELANPISEEYSVLRTSLLPGLLEALSYNKNRKNPDVR 431 (650)
T ss_pred hHHHHHHHHHHHHHhCCcceEeeeccCCHHHHHHhccCCCcceEecCCcchhHHHHHHHHHHHHHHHHHHhhccCCCCee
Confidence 455677889999999999999999997542 111111 1111 11 112235565544443333321 1 258
Q ss_pred eEEEecceecCCCCCC--ccc---------cccccceeeeeccccHHHHHHHHHHHHHHHH
Q 013865 317 VFETGPVFRAEDSYTH--RHL---------CEFTGLDVEMEIKKHYSEVMDIVDRLFVTIF 366 (435)
Q Consensus 317 VfeIgp~FR~E~s~t~--rHl---------~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~ 366 (435)
+||||.+|-..+.... +|+ .+-|.-. .-. ++.|+-..++.++..+-
T Consensus 432 iFEiG~v~~~~~~~~~~~~~~~~l~~g~~~~~~w~~~---~~v-~f~d~Kg~ve~ll~~lg 488 (650)
T COG0072 432 IFEIGDVFVKDEEAERETRHLAGLAAGLAGEESWQGK---RPV-DFYDAKGDLEALLEALG 488 (650)
T ss_pred EEEeeeeEecCCcccchhHHHHHHhhccccccccccC---CCc-CHHHHHHHHHHHHHHhC
Confidence 9999999997532110 111 2222222 012 36788888888877653
No 249
>cd05691 S1_RPS1_repeat_ec6 S1_RPS1_repeat_ec6: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 6 (ec6) of the Escherichia coli RPS1. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Probab=31.10 E-value=1.1e+02 Score=22.96 Aligned_cols=50 Identities=18% Similarity=0.249 Sum_probs=33.7
Q ss_pred EEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHH-HHHhcCCCCcEEEEE
Q 013865 109 IRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMV-RFVRSLSNESIVDVI 166 (435)
Q Consensus 109 v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~-k~~~~l~~esiV~V~ 166 (435)
|.|.|..+...| +|+.|..+ +.+++..+. .+.+.+ +....++.|+.|.+.
T Consensus 4 v~g~V~~v~~~g---~~v~l~~~---~~g~i~~~~--~~~~~~~~~~~~~~~Gd~v~~~ 54 (73)
T cd05691 4 VTGKVTEVDAKG---ATVKLGDG---VEGFLRAAE--LSRDRVEDATERFKVGDEVEAK 54 (73)
T ss_pred EEEEEEEEECCe---EEEEeCCC---CEEEEEHHH--CCCccccCHHHccCCCCEEEEE
Confidence 689999999877 89998654 677776542 122111 223457899998876
No 250
>PRK00629 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed
Probab=30.94 E-value=1.3e+02 Score=34.43 Aligned_cols=108 Identities=15% Similarity=0.135 Sum_probs=58.1
Q ss_pred HHHHHHHHhhcCCeEEeeCceeeccC-CC--C-CcceeEe-ccC-CCceeeccChHHHHhhhc----cCCCc--eeEEEe
Q 013865 254 VGNIFRQFLLSENFVEIHTPKLIAGS-SE--G-GSAVFRL-DYK-GQSACLAQSPQLHKQMSI----CGDFG--RVFETG 321 (435)
Q Consensus 254 i~~~~r~fl~~~gF~EV~TP~l~~~~-~e--g-ga~~F~v-~~~-~~~~~L~~Spql~lq~~i----~~g~~--rVfeIg 321 (435)
+.+.+|++|...||.||-|-.+++.. .. + ......+ |-. ..--+||.|-=.-|=..+ ..+.. |+||||
T Consensus 492 ~~~~ir~~L~~~Gf~Ev~tysf~~~~~~~~~~~~~~~i~l~NPis~e~~~lR~SLlp~LL~~~~~N~~~~~~~i~lFEiG 571 (791)
T PRK00629 492 LLRRLRRALAALGYQEVITYSFVSPEDAKLFGLNPEPLLLLNPISEELSVMRTSLLPGLLEAVAYNLNRGNKDVALFEIG 571 (791)
T ss_pred HHHHHHHHHHHCCCcEEeccccCCHHHHHhcCCCCCeEEEeCCCchHHHHHHHhhHHHHHHHHHHHHhCCCCCEeEEeee
Confidence 44678999999999999999997541 11 0 0011222 222 233456655322222222 12332 899999
Q ss_pred cceecCCCCCCccccccccceeeeecc-----------ccHHHHHHHHHHHHHHH
Q 013865 322 PVFRAEDSYTHRHLCEFTGLDVEMEIK-----------KHYSEVMDIVDRLFVTI 365 (435)
Q Consensus 322 p~FR~E~s~t~rHl~EFt~lE~e~a~~-----------~~~~d~m~~~e~li~~i 365 (435)
+||.... + ...|-+.+=+-++.. -++.++-..++.++..+
T Consensus 572 ~Vf~~~~--~--~~~e~~~la~~~~g~~~~~~w~~~~~~df~~~Kg~le~ll~~l 622 (791)
T PRK00629 572 RVFLPDG--D--LPREPEHLAGVLTGNRVEESWGGKRPVDFFDLKGDVEALLEAL 622 (791)
T ss_pred eeeCCCC--C--CCcchhEEEEEEECCCccccccccCCCCHHHHHHHHHHHHHHc
Confidence 9996421 0 111323332222220 14778888888888644
No 251
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=30.52 E-value=57 Score=25.16 Aligned_cols=23 Identities=17% Similarity=0.270 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHhhcCCeEEee
Q 013865 249 RIQSQVGNIFRQFLLSENFVEIH 271 (435)
Q Consensus 249 ~~rs~i~~~~r~fl~~~gF~EV~ 271 (435)
+.|..|++.||+||...|=|.|.
T Consensus 2 ~kre~i~~~iR~~fs~lG~I~vL 24 (62)
T PF15513_consen 2 RKREEITAEIRQFFSQLGEIAVL 24 (62)
T ss_pred cHHHHHHHHHHHHHHhcCcEEEE
Confidence 46889999999999999977764
No 252
>COG0587 DnaE DNA polymerase III, alpha subunit [DNA replication, recombination, and repair]
Probab=30.34 E-value=1.9e+02 Score=34.72 Aligned_cols=62 Identities=24% Similarity=0.410 Sum_probs=46.4
Q ss_pred CCEEEEEEEEeeeec-----CCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEec
Q 013865 104 DQEVLIRGRVHTTRP-----VGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSV 171 (435)
Q Consensus 104 g~~V~v~GrV~~~R~-----~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~ 171 (435)
+..+.+.|=|..+|. .|++++|+.|.|.++.+=+|+.. ....++...+-.+.++.|.|.+..
T Consensus 976 ~~~~~~~~~i~~vr~~~tk~~G~~~~f~tl~D~~g~~e~v~f~------~~~~~~~~~l~~~~~~~v~g~v~~ 1042 (1139)
T COG0587 976 GRRVVLAGGIVAVRQRPTKAKGNKMAFLTLEDETGILEVVVFP------SEYERYRRLLLEGRLLIVKGKVQR 1042 (1139)
T ss_pred cceeEEEEEEEEEEEeeccCCCCEEEEEEEecCCCcEEEEEcH------HHHHHHHHHhccCcEEEEEEEEEe
Confidence 334777777777654 35569999999999988888763 244456667777799999999876
No 253
>TIGR00472 pheT_bact phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial. Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from Bacteria other than spirochetes, as well as a chloroplast-encoded form from Porphyra purpurea. The chloroplast-derived sequence is considerably shorter at the amino end, however.
Probab=30.10 E-value=1.1e+02 Score=35.04 Aligned_cols=106 Identities=18% Similarity=0.269 Sum_probs=57.0
Q ss_pred HHHHHHhhcCCeEEeeCceeeccC-CC----CCcc-eeEe-ccC-CCceeeccC--hHHHHhhhc--cCCCc--eeEEEe
Q 013865 256 NIFRQFLLSENFVEIHTPKLIAGS-SE----GGSA-VFRL-DYK-GQSACLAQS--PQLHKQMSI--CGDFG--RVFETG 321 (435)
Q Consensus 256 ~~~r~fl~~~gF~EV~TP~l~~~~-~e----gga~-~F~v-~~~-~~~~~L~~S--pql~lq~~i--~~g~~--rVfeIg 321 (435)
+.+|++|...||.||-|-.+++.. .. .... ...+ |-. ..--+||.| |.|-.-..- ..+.. |+||||
T Consensus 498 ~~~r~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~~~~i~l~NPis~e~s~lR~SLlpgLL~~~~~N~~~~~~~~~lFEiG 577 (798)
T TIGR00472 498 RKLRTLLVGLGLNEVITYSLVSSEKAEKFNFPKLENLVEIKNPLSNERSVLRTSLLPSLLEVLAYNQNRKNKDVKIFEIG 577 (798)
T ss_pred HHHHHHHHHCCCcEEeccccCCHHHHHhhcCCCCCceEEEeCCCchHHHHHHHhhHHHHHHHHHHHHhCCCCCEeEEeee
Confidence 467999999999999999997541 10 0000 1222 211 122355554 333332111 12333 899999
Q ss_pred cceecCCCCCCccccccccceeeeecc------------ccHHHHHHHHHHHHHHH
Q 013865 322 PVFRAEDSYTHRHLCEFTGLDVEMEIK------------KHYSEVMDIVDRLFVTI 365 (435)
Q Consensus 322 p~FR~E~s~t~rHl~EFt~lE~e~a~~------------~~~~d~m~~~e~li~~i 365 (435)
.||...+. . ..|.++|=+-++.. -++.|+-..++.++..+
T Consensus 578 ~V~~~~~~-~---~~e~~~La~~~~g~~~~~~~~~~~~~~df~d~Kg~le~ll~~l 629 (798)
T TIGR00472 578 KVFAKDGL-G---VKEQLRLAILISGEKNPSSWNHKEEKVDFYDLKGDVESLLELL 629 (798)
T ss_pred cccCCCCC-C---cchhhEEEEEEECCCCcccccCCCCcCChHHHHHHHHHHHHHc
Confidence 99954221 1 12333333322221 14788888888888644
No 254
>COG2176 PolC DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair]
Probab=29.52 E-value=6.3e+02 Score=30.65 Aligned_cols=78 Identities=15% Similarity=0.189 Sum_probs=54.0
Q ss_pred EEEEEEEEeee----ecCCCceEEEEEEeCCeE--EEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCcccCCC
Q 013865 106 EVLIRGRVHTT----RPVGNKLAFVVVRERVST--VQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGA 179 (435)
Q Consensus 106 ~V~v~GrV~~~----R~~G~kl~Fl~Lrd~~~~--iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~~~~~~ 179 (435)
.|.|.|-|-.+ ..+|+.+.=+.+.|.+.+ +|..+... +..+....|+.|.+|.|.|.|.... -
T Consensus 241 ~v~v~G~IF~~e~~~~ksGr~l~~i~vTD~t~Sl~~k~f~~~~------ed~~~~~~ik~g~wvk~~g~v~~d~-----f 309 (1444)
T COG2176 241 RVKVEGYIFKIEIKELKSGRTLLNIKVTDYTSSLILKKFLRDE------EDEKKFDGIKKGMWVKARGNVQLDT-----F 309 (1444)
T ss_pred ceEEEEEEEEEeeeecccCcEEEEEEEecCchheeehhhcccc------ccHHHHhhcccCcEEEEEEEEEecc-----c
Confidence 49999999875 446777777888888765 44444321 2245678999999999999997642 2
Q ss_pred ceeEEEEEeEEEEee
Q 013865 180 TQQVEVQIKKLYCVS 194 (435)
Q Consensus 180 t~~lEi~v~~i~vls 194 (435)
++++.+.+..|.-+.
T Consensus 310 ~~~l~m~i~~I~ei~ 324 (1444)
T COG2176 310 TRDLTMIINDINEIE 324 (1444)
T ss_pred ccceEEEhhhhhhhh
Confidence 345777776665544
No 255
>cd04454 S1_Rrp4_like S1_Rrp4_like: Rrp4-like, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Rrp4 protein, and Rrp40 and Csl4 proteins, also represented in this group, are subunits of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in eukarytes and archaea. Its functions include the removal of incorrectly processed RNA and the maintenance of proper levels of mRNA, rRNA and a number of small RNA species. In Saccharomyces cerevisiae, the exosome includes nine core components, six of which are homologous to bacterial RNase PH. These form a hexameric ring structure. The other three subunits (RrP4, Rrp40, and Csl4) contain an S1 RNA binding domain and are part of the "S1 pore structure".
Probab=29.19 E-value=2.2e+02 Score=22.21 Aligned_cols=51 Identities=12% Similarity=-0.007 Sum_probs=32.9
Q ss_pred EEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEE
Q 013865 109 IRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVI 166 (435)
Q Consensus 109 v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~ 166 (435)
|-|+|..+...| +++++.. ..++.+....-. .....+....++.||.|.+.
T Consensus 10 V~G~V~~v~~~~---~~V~i~~---~~~g~l~~~~~~-~~~~~~~~~~~~~GD~i~~~ 60 (82)
T cd04454 10 VIGIVTEVNSRF---WKVDILS---RGTARLEDSSAT-EKDKKEIRKSLQPGDLILAK 60 (82)
T ss_pred EEEEEEEEcCCE---EEEEeCC---CceEEeechhcc-CcchHHHHhcCCCCCEEEEE
Confidence 589999998766 7888844 366776654211 11122334568999998765
No 256
>cd05693 S1_Rrp5_repeat_hs1_sc1 S1_Rrp5_repeat_hs1_sc1: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 1 (hs1) and S. cerevisiae S1 repeat 1 (sc1). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=28.93 E-value=1.5e+02 Score=24.62 Aligned_cols=51 Identities=12% Similarity=0.167 Sum_probs=33.4
Q ss_pred EEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHH--------------------HhcCCCCcEEEEE
Q 013865 108 LIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRF--------------------VRSLSNESIVDVI 166 (435)
Q Consensus 108 ~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~--------------------~~~l~~esiV~V~ 166 (435)
.|-|+|.++...| +|+.|-.+ +.+.+..+. ++.....+ ...+..|++|.+.
T Consensus 6 vV~G~V~~v~~~g---l~v~L~~g---~~G~v~~se--is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~vGd~V~~k 76 (100)
T cd05693 6 LVLGQVKEITKLD---LVISLPNG---LTGYVPITN--ISDAYTERLEELDEESEEEDDEEELPDLEDLFSVGQLVRCK 76 (100)
T ss_pred EEEEEEEEEcCCC---EEEECCCC---cEEEEEHHH--hhHHHHHHHHHhhhhccccccccccCCHHHhccCCCEEEEE
Confidence 4789999999887 88988543 566665432 23222222 2457899988765
No 257
>PRK13159 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=28.52 E-value=3.4e+02 Score=24.81 Aligned_cols=58 Identities=17% Similarity=0.177 Sum_probs=42.5
Q ss_pred CCCCEEEEEEEEe--eeecCCC--ceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEe
Q 013865 102 LKDQEVLIRGRVH--TTRPVGN--KLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVS 170 (435)
Q Consensus 102 ~~g~~V~v~GrV~--~~R~~G~--kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~ 170 (435)
..++.++|.|.|. ++...+. .+.| .+.|+..+|.|....- -++ ..+-|.-|.++|.+.
T Consensus 49 ~~~~~~RlGG~V~~GSv~r~~~~~~v~F-~vtD~~~~v~V~Y~Gi----lPD------lFrEGqgVVaeG~~~ 110 (155)
T PRK13159 49 AGYQQFRLGGMVKAGSIQRAADSLKVSF-TVIDKNAATQVEYTGI----LPD------LFRDNQSVIANGRMQ 110 (155)
T ss_pred ccCCeEEEccEEecCcEEEcCCCcEEEE-EEEcCCcEEEEEEccC----CCc------cccCCCeEEEEEEEc
Confidence 3468999999998 6666654 4566 7789999998887632 122 456788899999884
No 258
>PF12857 TOBE_3: TOBE-like domain; InterPro: IPR024765 The TOBE (transport-associated OB) domain [] always occurs as a dimer and it is found in ABC transporters immediately after the ATPase domain. This entry represents a TOBE-like domain, found in the C terminus of ATPase subunit CysA. CysA is part of the CysATWP ABC transporter complex, involved in sulphate/thiosulphate import [, ].
Probab=28.38 E-value=2.5e+02 Score=20.78 Aligned_cols=49 Identities=16% Similarity=0.106 Sum_probs=36.4
Q ss_pred EEEEEEeeeecCCCceEEEEEEeC--CeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEE
Q 013865 108 LIRGRVHTTRPVGNKLAFVVVRER--VSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVI 166 (435)
Q Consensus 108 ~v~GrV~~~R~~G~kl~Fl~Lrd~--~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~ 166 (435)
.+.|+|..++..| -++.++|... +..|.+-++... ..-.+..|+.|.+.
T Consensus 6 ~l~a~V~~v~~~G-~~vRlEl~~~~~~~~iEvel~~~~---------~~l~l~~G~~V~l~ 56 (58)
T PF12857_consen 6 GLPARVRRVRPVG-PEVRLELKRLDDGEPIEVELPRER---------RQLGLQPGDRVYLR 56 (58)
T ss_pred cEeEEEEEEEecC-CeEEEEEEECCCCCEEEEEeCHhH---------HhcCCCCCCEEEEE
Confidence 4789999999999 7799999654 467888876431 12356779998875
No 259
>PRK13902 alaS alanyl-tRNA synthetase; Provisional
Probab=28.09 E-value=90 Score=36.39 Aligned_cols=99 Identities=16% Similarity=0.188 Sum_probs=62.6
Q ss_pred HHHHHHHHHHhhcCCeEEeeCceeeccCCCCCcceeEeccCCCceeeccChHHHHhhhccCC-----CceeEEEecceec
Q 013865 252 SQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGD-----FGRVFETGPVFRA 326 (435)
Q Consensus 252 s~i~~~~r~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~~~~~~~L~~Spql~lq~~i~~g-----~~rVfeIgp~FR~ 326 (435)
+.|-..|-+||.++|-.-|..--+++ -...+++|+.|+-.-.|-.+..| ..|+-..-||.|.
T Consensus 62 ~eiR~~Fl~FF~~~gH~~v~s~pvvp-------------rw~dDllft~Agm~~Fkp~f~~G~~~pp~~~~~~sQ~CiR~ 128 (900)
T PRK13902 62 KEMREKFLSFFEKHGHTRIERYPVVA-------------RWRDDVYLTIASIYDFQPWVTSGLVPPPANPLVISQPCIRL 128 (900)
T ss_pred HHHHHHHHHHHHhCCCEEcCCcCcCC-------------CCCCCeeeeecchhhhhHHhcCCCCCCCCCCceecccccch
Confidence 34556677899999966665433322 11223666666554444444322 4688888999998
Q ss_pred CC----CCCCccccccccceeeeecc-----cc-HHHHHHHHHHHHHH
Q 013865 327 ED----SYTHRHLCEFTGLDVEMEIK-----KH-YSEVMDIVDRLFVT 364 (435)
Q Consensus 327 E~----s~t~rHl~EFt~lE~e~a~~-----~~-~~d~m~~~e~li~~ 364 (435)
.+ ..|.||++=|.||-- .+|. +. -++.+.++-++|..
T Consensus 129 nDldnVG~t~rH~T~FEMlGn-~sFg~~~~~~YfK~eaI~~a~e~lt~ 175 (900)
T PRK13902 129 NDIDNVGRTGRHLTSFEMMAH-HAFNYPDKEVYWKDETVEYCFEFFTK 175 (900)
T ss_pred hhhhhccccCCchhhhhhccc-eeeCCCCcccccHHHHHHHHHHHHHh
Confidence 53 358999999999864 4453 21 15777777777765
No 260
>PLN02900 alanyl-tRNA synthetase
Probab=28.01 E-value=1.5e+02 Score=34.65 Aligned_cols=101 Identities=17% Similarity=0.209 Sum_probs=59.5
Q ss_pred HHHHHHHHHHhhcCCeEEeeCceeeccC------CCCCcceeEeccCCCceeeccChHHHHhhhccCCCceeEEEeccee
Q 013865 252 SQVGNIFRQFLLSENFVEIHTPKLIAGS------SEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFR 325 (435)
Q Consensus 252 s~i~~~~r~fl~~~gF~EV~TP~l~~~~------~egga~~F~v~~~~~~~~L~~Spql~lq~~i~~g~~rVfeIgp~FR 325 (435)
+.|-+.|-+||.++|-.-|.+--|++.. +..|..+| +++||-+.+-.+ =.+.+.|+=..-+|.|
T Consensus 14 ~eiR~~Fl~FF~~~gH~~v~s~slvp~~dptllftnAGm~~F------k~~f~G~~~p~~----~~~~~~R~~~~QkCiR 83 (936)
T PLN02900 14 DRIRRTFLSFFESKGHTFLPSSPLVPVDDPTLLFTNAGMNQF------KPIFLGTADPNT----PLRKLPRATNTQKCIR 83 (936)
T ss_pred HHHHHHHHHHHHhCCCEEeCCCCcCCCCCCCeeeeecchhhh------hhhhcCCCCCCC----CCCCCCceeeeccccc
Confidence 4455677789999999999877676521 01122233 334443332100 0123567888889999
Q ss_pred c-------CC-CCCCccccccccceeeeeccccH-HHHHHHHHHHHH
Q 013865 326 A-------ED-SYTHRHLCEFTGLDVEMEIKKHY-SEVMDIVDRLFV 363 (435)
Q Consensus 326 ~-------E~-s~t~rHl~EFt~lE~e~a~~~~~-~d~m~~~e~li~ 363 (435)
+ |+ ..|.||++=|-||-- ++|.+.+ ++.+.+.=+++-
T Consensus 84 ~gGKHnDlenVG~t~rHhTfFEMlGn-fSfgdYfK~eaI~~awe~lT 129 (936)
T PLN02900 84 AGGKHNDLDDVGKDTYHHTFFEMLGN-WSFGDYFKKEAIGWAWELLT 129 (936)
T ss_pred CCCCCCCHhhccCCCCchHHHHhhhc-cchhhhhHHHHHHHHHHHHH
Confidence 9 22 358999988888864 5565422 355555555443
No 261
>cd05685 S1_Tex S1_Tex: The C-terminal S1 domain of a transcription accessory factor called Tex, which has been characterized in Bordetella pertussis and Pseudomonas aeruginosa. The tex gene is essential in Bortella pertusis and is named for its role in toxin expression. Tex has two functional domains, an N-terminal domain homologous to the Escherichia coli maltose repression protein, which is a poorly defined transcriptional factor, and a C-terminal S1 RNA-binding domain. Tex is found in prokaryotes, eukaryotes, and archaea.
Probab=27.30 E-value=1.3e+02 Score=21.85 Aligned_cols=51 Identities=22% Similarity=0.274 Sum_probs=32.6
Q ss_pred EEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHH-HHHHHhcCCCCcEEEEE
Q 013865 108 LIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKE-MVRFVRSLSNESIVDVI 166 (435)
Q Consensus 108 ~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~-~~k~~~~l~~esiV~V~ 166 (435)
.+.|+|..+...| +|+.|.++ +.+++..... +.+ ....-..++.|+.|.|.
T Consensus 3 ~~~g~V~~i~~~G---~fv~l~~~---~~g~~~~~~l--~~~~~~~~~~~~~~Gd~v~v~ 54 (68)
T cd05685 3 VLEGVVTNVTDFG---AFVDIGVK---QDGLIHISKM--ADRFVSHPSDVVSVGDIVEVK 54 (68)
T ss_pred EEEEEEEEEeccc---EEEEcCCC---CEEEEEHHHC--CCccccCHHHhcCCCCEEEEE
Confidence 3789999999888 89999643 6677764321 111 00112347889888876
No 262
>cd05708 S1_Rrp5_repeat_sc12 S1_Rrp5_repeat_sc12: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes S. cerevisiae S1 repeat 12 (sc12). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=26.32 E-value=1.2e+02 Score=22.89 Aligned_cols=52 Identities=17% Similarity=0.202 Sum_probs=32.4
Q ss_pred EEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEE
Q 013865 109 IRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVI 166 (435)
Q Consensus 109 v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~ 166 (435)
+.|+|.++...| +|+.|.+ ..+.+++..+... ..........++.|+.|.|.
T Consensus 6 v~g~V~~i~~~g---~~v~l~~--~~~~g~i~~~~l~-~~~~~~~~~~~~~Gd~v~v~ 57 (77)
T cd05708 6 IDGTVRRVEDYG---VFIDIDG--TNVSGLCHKSEIS-DNRVADASKLFRVGDKVRAK 57 (77)
T ss_pred EEEEEEEEEcce---EEEEECC--CCeEEEEEHHHCC-CCccCCHhHeecCCCEEEEE
Confidence 789999999887 8998864 2356666543211 00001112457899998875
No 263
>TIGR03683 A-tRNA_syn_arch alanyl-tRNA synthetase. This family of alanyl-tRNA synthetases is limited to the archaea, and is a subset of those sequences identified by the model pfam07973 covering the second additional domain (SAD) of alanyl and threonyl tRNA synthetases.
Probab=26.03 E-value=1.2e+02 Score=35.53 Aligned_cols=97 Identities=15% Similarity=0.165 Sum_probs=61.2
Q ss_pred HHHHHHHHHHhhcCCeEEeeCceeeccCCCCCcceeEeccCCCceeeccChHHHHhhhccCC-----CceeEEEecceec
Q 013865 252 SQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGD-----FGRVFETGPVFRA 326 (435)
Q Consensus 252 s~i~~~~r~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~~~~~~~L~~Spql~lq~~i~~g-----~~rVfeIgp~FR~ 326 (435)
+.|-+.|-+||.++|-.-|..--+++ -...+++|+.|+-.-.|-.+..| ..|+-..-||.|.
T Consensus 59 ~eiR~~fl~FF~~~gH~~v~s~pvvp-------------rw~dDllft~Agm~~Fkp~f~~G~~~pp~~r~~~sQkCiR~ 125 (902)
T TIGR03683 59 DEMREAFLSFFEKHGHTRIKRYPVVA-------------RWRDDVYLTIASIADFQPWVTSGLVPPPANPLVISQPCIRL 125 (902)
T ss_pred HHHHHHHHHHHHhCCCEEeCCcCcCc-------------CCCCCeeEeecchhhhhHhhcCCCCCCCCCCceeccccccc
Confidence 34566777899999966665433332 11122555555544444444322 3678888899997
Q ss_pred CC----CCCCccccccccceeeeecc-----cc-HHHHHHHHHHHH
Q 013865 327 ED----SYTHRHLCEFTGLDVEMEIK-----KH-YSEVMDIVDRLF 362 (435)
Q Consensus 327 E~----s~t~rHl~EFt~lE~e~a~~-----~~-~~d~m~~~e~li 362 (435)
.+ ..|.||++=|.||-- .+|. +. -++.+.++-++|
T Consensus 126 nDldnVG~t~rH~TfFEMlGn-~sFg~~~~~dYfK~EaI~~a~e~l 170 (902)
T TIGR03683 126 NDIDNVGRTGRHLTCFEMMAH-HAFNYPDKEIYWKDETVEYCFEFL 170 (902)
T ss_pred cccccccCCCCcchhhhhccc-eeeCCCCcccCcHHHHHHHHHHHH
Confidence 53 358999999999864 4454 21 257788887777
No 264
>cd05702 S1_Rrp5_repeat_hs11_sc8 S1_Rrp5_repeat_hs11_sc8: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 11 (hs11) and S. cerevisiae S1 repeat 8 (sc8). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=25.91 E-value=1.7e+02 Score=22.09 Aligned_cols=53 Identities=11% Similarity=0.088 Sum_probs=31.5
Q ss_pred EEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcH-HHHHHHhcCCCCcEEEEE
Q 013865 108 LIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSK-EMVRFVRSLSNESIVDVI 166 (435)
Q Consensus 108 ~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~-~~~k~~~~l~~esiV~V~ 166 (435)
.|.|+|..+...| +|+.|-.+ +.+.+..+.-..+. ....-...+..|++|.+.
T Consensus 3 iV~g~V~~i~~~g---i~v~l~~~---i~g~i~~~~i~~~~~~~~~~~~~~~~Gd~i~~k 56 (70)
T cd05702 3 LVKAKVKSVKPTQ---LNVQLADN---VHGRIHVSEVFDEWPDGKNPLSKFKIGQKIKAR 56 (70)
T ss_pred EEEEEEEEEECCc---EEEEeCCC---cEEEEEHHHhccccccccChhHhCCCCCEEEEE
Confidence 3789999998877 78888543 66766543211000 011112457888887765
No 265
>PRK08582 hypothetical protein; Provisional
Probab=24.74 E-value=1.6e+02 Score=26.10 Aligned_cols=54 Identities=24% Similarity=0.335 Sum_probs=34.8
Q ss_pred CCCEEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHH-HHhcCCCCcEEEEE
Q 013865 103 KDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVR-FVRSLSNESIVDVI 166 (435)
Q Consensus 103 ~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k-~~~~l~~esiV~V~ 166 (435)
.|+. |.|.|..+...| +|+.|-.+ +.+++..+. ++...+. ....+..||.|.|.
T Consensus 5 vG~i--v~G~V~~I~~fG---~fV~L~~~---~~GlVhiSe--ls~~~v~~~~~~l~vGD~Vkvk 59 (139)
T PRK08582 5 VGSK--LQGKVTGITNFG---AFVELPEG---KTGLVHISE--VADNYVKDINDHLKVGDEVEVK 59 (139)
T ss_pred CCCE--EEEEEEEEECCe---EEEEECCC---CEEEEEeec--cCcccccccccccCCCCEEEEE
Confidence 3544 799999999998 89999653 555655432 2211111 12458899998775
No 266
>PF03459 TOBE: TOBE domain; InterPro: IPR005116 The TOBE domain [] (Transport-associated OB) always occurs as a dimer as the C-terminal strand of each domain is supplied by the partner. It is probably involved in the recognition of small ligands such as molybdenum (P46930 from SWISSPROT) and sulphate (P16676 from SWISSPROT), and is found in ABC transporters immediately after the ATPase domain.; GO: 0005215 transporter activity, 0005524 ATP binding, 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0006810 transport, 0043190 ATP-binding cassette (ABC) transporter complex; PDB: 1G29_2 1H9M_B 1H9J_A 1H9K_A 1H9R_B 1O7L_C 1H9S_A 1B9N_A 1B9M_A 1GUS_C ....
Probab=24.13 E-value=2.9e+02 Score=20.20 Aligned_cols=50 Identities=14% Similarity=0.036 Sum_probs=36.0
Q ss_pred EEEEEEeeeecCCCceEEEEEEeCCeE-EEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEE
Q 013865 108 LIRGRVHTTRPVGNKLAFVVVRERVST-VQCLATVKPDSVSKEMVRFVRSLSNESIVDVI 166 (435)
Q Consensus 108 ~v~GrV~~~R~~G~kl~Fl~Lrd~~~~-iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~ 166 (435)
.+.|+|..+...| ...++.++-+++. |-+.+... ... .-.|..|+-|.+.
T Consensus 6 ~l~g~V~~ie~~g-~~~~v~~~~~~~~~l~a~it~~------~~~--~L~L~~G~~V~~~ 56 (64)
T PF03459_consen 6 QLPGTVESIENLG-SEVEVTLDLGGGETLTARITPE------SAE--ELGLKPGDEVYAS 56 (64)
T ss_dssp EEEEEEEEEEESS-SEEEEEEEETTSEEEEEEEEHH------HHH--HCT-STT-EEEEE
T ss_pred EEEEEEEEEEECC-CeEEEEEEECCCCEEEEEEcHH------HHH--HcCCCCCCEEEEE
Confidence 5899999999999 7899999988877 88887642 111 1258899888764
No 267
>cd05689 S1_RPS1_repeat_ec4 S1_RPS1_repeat_ec4: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 4 (ec4) of the Escherichia coli RPS1. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Probab=24.02 E-value=1.3e+02 Score=22.76 Aligned_cols=28 Identities=32% Similarity=0.450 Sum_probs=21.9
Q ss_pred EEEEEEeeeecCCCceEEEEEEeCCeEEEEEEee
Q 013865 108 LIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATV 141 (435)
Q Consensus 108 ~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~ 141 (435)
.+.|+|..+...| +|+.|.++ +.+++..
T Consensus 6 ~~~g~V~~i~~~G---~fv~l~~~---~~Gl~~~ 33 (72)
T cd05689 6 RLFGKVTNLTDYG---CFVELEEG---VEGLVHV 33 (72)
T ss_pred EEEEEEEEEEeeE---EEEEcCCC---CEEEEEE
Confidence 4899999999998 89999653 5566654
No 268
>TIGR00638 Mop molybdenum-pterin binding domain. This model describes a multigene family of molybdenum-pterin binding proteins of about 70 amino acids in Clostridium pasteurianum, as a tandemly-repeated domain C-terminal to an unrelated domain in ModE, a molybdate transport gene repressor of E. coli, and in single or tandemly paired domains in several related proteins.
Probab=23.90 E-value=3e+02 Score=20.31 Aligned_cols=50 Identities=16% Similarity=0.060 Sum_probs=33.2
Q ss_pred EEEEEEeeeecCCCceEEEEEEeCCe-EEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEE
Q 013865 108 LIRGRVHTTRPVGNKLAFVVVRERVS-TVQCLATVKPDSVSKEMVRFVRSLSNESIVDVI 166 (435)
Q Consensus 108 ~v~GrV~~~R~~G~kl~Fl~Lrd~~~-~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~ 166 (435)
.+.|+|.++...| .++-+.|+-+++ +|.+.+.... . ..-.|..|+-|.+.
T Consensus 8 ~l~g~I~~i~~~g-~~~~v~l~~~~~~~l~a~i~~~~-------~-~~l~l~~G~~v~~~ 58 (69)
T TIGR00638 8 QLKGKVVAIEDGD-VNAEVDLLLGGGTKLTAVITLES-------V-AELGLKPGKEVYAV 58 (69)
T ss_pred EEEEEEEEEEECC-CeEEEEEEECCCCEEEEEecHHH-------H-hhCCCCCCCEEEEE
Confidence 5899999998877 566677776554 7777765321 0 11257888877654
No 269
>PF08496 Peptidase_S49_N: Peptidase family S49 N-terminal; InterPro: IPR013703 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found to the N terminus of bacterial signal peptidases that belong to the MEROPS peptidase family S49 (protease IV family, clan SK) (see also IPR002142 from INTERPRO) [, ]. ; GO: 0004252 serine-type endopeptidase activity, 0005886 plasma membrane
Probab=23.79 E-value=98 Score=28.21 Aligned_cols=23 Identities=30% Similarity=0.297 Sum_probs=16.8
Q ss_pred cccChhHHHHHHHHHHHHHHHHH
Q 013865 19 QSISKKAAKKEAAKKAKEERRKE 41 (435)
Q Consensus 19 ~~~sk~~lkk~~k~~~k~~kka~ 41 (435)
..++++++|+..|+.+|++|+.+
T Consensus 61 all~k~e~K~~~K~~KK~~K~~~ 83 (155)
T PF08496_consen 61 ALLDKKELKAWEKAEKKEEKAKA 83 (155)
T ss_pred HhcCHHHHHHHHHHHHHHHHHHh
Confidence 35788888888887777766544
No 270
>KOG0188 consensus Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=23.08 E-value=91 Score=35.29 Aligned_cols=97 Identities=20% Similarity=0.270 Sum_probs=61.1
Q ss_pred HHHHHHHHHHhhcCCeEEeeCceeeccC------CCCCcceeEeccCCCceeeccChHHHHhhhccCCCceeEEEeccee
Q 013865 252 SQVGNIFRQFLLSENFVEIHTPKLIAGS------SEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFR 325 (435)
Q Consensus 252 s~i~~~~r~fl~~~gF~EV~TP~l~~~~------~egga~~F~v~~~~~~~~L~~Spql~lq~~i~~g~~rVfeIgp~FR 325 (435)
+.|-+.|-+||.+++-.-|++--.++-. ...|.+-| +|.||-. .+.+.|+...-+|.|
T Consensus 5 ~evR~tFldfF~~k~H~~V~SSsViP~dDpTLLFaNAGMNQF------KpifLgt----------~a~lkRa~NsQKCIR 68 (895)
T KOG0188|consen 5 SEVRKTFLDFFKSKHHKIVHSSSVIPFDDPTLLFANAGMNQF------KPIFLGT----------MAKLKRAANSQKCIR 68 (895)
T ss_pred HHHHHHHHHHHHhcCceEeccCCcccCCCCeeEEeccchhhc------chhhhhc----------hhhhHhhhhhhhHHh
Confidence 5677788899999997777765444311 01233334 3444444 357999999999999
Q ss_pred cCC--------CCCCccccccccceeeeeccccH--HHHHHHHHHHHHHHH
Q 013865 326 AED--------SYTHRHLCEFTGLDVEMEIKKHY--SEVMDIVDRLFVTIF 366 (435)
Q Consensus 326 ~E~--------s~t~rHl~EFt~lE~e~a~~~~~--~d~m~~~e~li~~i~ 366 (435)
|-+ ..+..|-+=|-||-- |+|.| | ++.+.+.=+|+..+.
T Consensus 69 AGGKHNDLdDVGkD~yHhTfFEMlGN-WSFGd-YfK~Eac~~AwelLt~vy 117 (895)
T KOG0188|consen 69 AGGKHNDLDDVGKDFYHHTFFEMLGN-WSFGD-YFKEEACAWAWELLTFVY 117 (895)
T ss_pred ccCCcCChhHhchhccccCchhhcCC-CCcch-HHHHHHHHHHHHHHHHhh
Confidence 964 124457667777753 56664 4 456666666666554
No 271
>cd04461 S1_Rrp5_repeat_hs8_sc7 S1_Rrp5_repeat_hs8_sc7: Rrp5 Homo sapiens S1 repeat 8 (hs8) and Saccharomyces cerevisiae S1 repeat 7 (sc7)-like domains. Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in S. cerevisiae Rrp5 and 14 S1 repeats in H. sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 8 and S. cerevisiae S1 repeat 7. Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=22.71 E-value=1.6e+02 Score=22.98 Aligned_cols=55 Identities=22% Similarity=0.150 Sum_probs=36.8
Q ss_pred CCCCEEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHH-HHHHHhcCCCCcEEEEE
Q 013865 102 LKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKE-MVRFVRSLSNESIVDVI 166 (435)
Q Consensus 102 ~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~-~~k~~~~l~~esiV~V~ 166 (435)
..|+.+ .|.|.++...| +|++|-+ .+++++..+.- +.+ .......++.|+.|.|.
T Consensus 13 ~~G~i~--~g~V~~v~~~G---~fv~l~~---~~~g~v~~~el--~~~~~~~~~~~~~~Gd~v~vk 68 (83)
T cd04461 13 KPGMVV--HGYVRNITPYG---VFVEFLG---GLTGLAPKSYI--SDEFVTDPSFGFKKGQSVTAK 68 (83)
T ss_pred CCCCEE--EEEEEEEeece---EEEEcCC---CCEEEEEHHHC--CcccccCHHHhcCCCCEEEEE
Confidence 456654 69999999988 8999953 37788775432 111 11233568889988876
No 272
>COG0013 AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=22.51 E-value=1.1e+02 Score=35.52 Aligned_cols=96 Identities=16% Similarity=0.286 Sum_probs=56.0
Q ss_pred HHHHHHHHHhhcCCeEEeeCceeeccCCCCCcceeEeccCCCceeeccChHHHHhhhccCC----CceeEEEecceecCC
Q 013865 253 QVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGD----FGRVFETGPVFRAED 328 (435)
Q Consensus 253 ~i~~~~r~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~~~~~~~L~~Spql~lq~~i~~g----~~rVfeIgp~FR~E~ 328 (435)
.|-+.|=+||.++|-.-|.+--|++ .-+-+++|+.|+-.-.|-.+.|+ ..|.-..-||.|+.+
T Consensus 10 EiR~~FL~FF~~kgH~~v~s~slVP-------------~nDptLLftnAGm~~FK~~f~g~v~p~~~r~~~sQkcIR~ND 76 (879)
T COG0013 10 EIRQKFLDFFEKKGHTVVPSSPLVP-------------RNDPTLLFTNAGMVQFKPYFTGGVTPPANRAVTSQKCIRTND 76 (879)
T ss_pred HHHHHHHHHHHHCCCeecCCCCcCC-------------CCCCCeEEeecccccchhhhcCCCCCCCCCeeccccccccCc
Confidence 4556667899999966665444432 12233333333332222222232 236667778999753
Q ss_pred ----CCCCccccccccceeeeeccccH--HHHHHHHHHHHH
Q 013865 329 ----SYTHRHLCEFTGLDVEMEIKKHY--SEVMDIVDRLFV 363 (435)
Q Consensus 329 ----s~t~rHl~EFt~lE~e~a~~~~~--~d~m~~~e~li~ 363 (435)
..|.||++=|.||-- .+|.+ | ++.+.++-+|+-
T Consensus 77 ieNVG~T~RHhTfFEMLGN-fSFGd-YFKeeAI~~AwEflT 115 (879)
T COG0013 77 IDNVGYTARHHTFFEMLGN-FSFGD-YFKEEAIEFAWEFLT 115 (879)
T ss_pred hhhcCccccchhHHHhhhc-CchhH-HHHHHHHHHHHHHHH
Confidence 469999999999864 45554 4 456666666554
No 273
>COG1098 VacB Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]
Probab=22.32 E-value=2.5e+02 Score=24.80 Aligned_cols=51 Identities=22% Similarity=0.371 Sum_probs=36.0
Q ss_pred EEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHH-hcCCCCcEEEEE
Q 013865 108 LIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFV-RSLSNESIVDVI 166 (435)
Q Consensus 108 ~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~-~~l~~esiV~V~ 166 (435)
.+.|+|..+-.-| +|+.|-.+.. ..+--+ .+...+++-+ ..|..|+-|.|.
T Consensus 8 ~l~GkItgI~~yG---AFV~l~~g~t---GLVHIS--EIa~~fVkdI~d~L~vG~eV~vK 59 (129)
T COG1098 8 KLKGKITGITPYG---AFVELEGGKT---GLVHIS--EIADGFVKDIHDHLKVGQEVKVK 59 (129)
T ss_pred eEEEEEEeeEecc---eEEEecCCCc---ceEEeh--HhhhhhHHhHHHHhcCCCEEEEE
Confidence 3789999999999 8999988763 333322 1334455544 468999999887
No 274
>cd04497 hPOT1_OB1_like hPOT1_OB1_like: A subfamily of OB folds similar to the first OB fold (OB1) of human protection of telomeres 1 protein (hPOT1), the single OB fold of the N-terminal domain of Schizosaccharomyces pombe POT1 (SpPOT1), and the first OB fold of the N-terminal domain of the alpha subunit (OB1Nalpha) of Oxytricha nova telomere end binding protein (OnTEBP). POT1 proteins recognize single-stranded (ss) 3-prime ends of the telomere. A 3-prime ss overhang is conserved in ciliated protozoa, yeast, and mammals. SpPOT1 is essential for telomere maintenance. It binds specifically to the ss G-rich telomeric sequence (GGTTAC) of S. pombe. hPOT1 binds specifically to ss telomeric DNA repeats ending with the sequence GGTTAG. Deletion of the S. pombe pot1+ gene results in a rapid loss of telomere sequences, chromosome mis-segregation and chromosome circularization. hPOT1 is implicated in telomere length regulation. The hPOT1 monomer consists of two closely connected OB folds (OB1-OB
Probab=22.10 E-value=4.2e+02 Score=23.19 Aligned_cols=71 Identities=11% Similarity=0.057 Sum_probs=46.0
Q ss_pred eEEeccccCCCCCCEEEEEEEEeeeec----CCC-ceEEEEEEeCC----eEEEEEEeeCCCCCcHHHHHHHhcCCCCcE
Q 013865 92 WTVVGALNGSLKDQEVLIRGRVHTTRP----VGN-KLAFVVVRERV----STVQCLATVKPDSVSKEMVRFVRSLSNESI 162 (435)
Q Consensus 92 ~~~i~~l~~~~~g~~V~v~GrV~~~R~----~G~-kl~Fl~Lrd~~----~~iQvv~~~~~~~~s~~~~k~~~~l~~esi 162 (435)
|+.|+++.. ..|..|.|-|=|..... .|+ -.+-+.|.|.+ ..|.|.+..... ..+..+..||+
T Consensus 3 f~~i~~~~~-~~~~~v~vigVV~~~~~p~~s~g~d~~~tl~i~D~S~~~~~~l~v~~F~~~~-------~~LP~v~~GDV 74 (138)
T cd04497 3 YTPLSSALK-ESGGSVNVIGVVVDAGPPVRSKGTDYCCTLTITDPSLANSDGLTVKLFRPNE-------ESLPIVKVGDI 74 (138)
T ss_pred eEeHHHHHh-ccCCeEEEEEEEeecCCCcccCCCcEEEEEEEECCCCCCCCcEEEEEECCCh-------hhCCCCCCCCE
Confidence 566666654 56888999998887543 332 34455677764 347777765321 12345789999
Q ss_pred EEEEEEEe
Q 013865 163 VDVIGVVS 170 (435)
Q Consensus 163 V~V~G~v~ 170 (435)
|.+.+.-.
T Consensus 75 Ill~~~kv 82 (138)
T cd04497 75 ILLRRVKI 82 (138)
T ss_pred EEEEEEEE
Confidence 99999644
No 275
>KOG2851 consensus Eukaryotic-type DNA primase, catalytic (small) subunit [Replication, recombination and repair]
Probab=21.78 E-value=1e+02 Score=31.97 Aligned_cols=53 Identities=15% Similarity=0.339 Sum_probs=37.0
Q ss_pred hHHHHhhhccCCCceeEEEecceecCCCCCCc-cccccccceeeeecc---ccHHHHHH
Q 013865 302 PQLHKQMSICGDFGRVFETGPVFRAEDSYTHR-HLCEFTGLDVEMEIK---KHYSEVMD 356 (435)
Q Consensus 302 pql~lq~~i~~g~~rVfeIgp~FR~E~s~t~r-Hl~EFt~lE~e~a~~---~~~~d~m~ 356 (435)
.+|-++ |.+-..--++||++|+.+..+..+ -...|+-+|=|..|. ++|+++-.
T Consensus 68 ~~~~k~--i~s~nP~KiDIGaVY~~~P~~~~t~~~s~~~~vekELVFDIDmTDYD~VR~ 124 (412)
T KOG2851|consen 68 SEFEKE--ISSTNPDKIDIGAVYSHRPRNHKTLRKSDFQAVEKELVFDIDMTDYDDVRT 124 (412)
T ss_pred HHHHHH--HhhcCCcceeecccccCCccccccccccccceeeeeeEEecccccChHHhh
Confidence 344444 566678889999999998742221 247999999998883 45776654
No 276
>cd05690 S1_RPS1_repeat_ec5 S1_RPS1_repeat_ec5: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 5 (ec5) of the Escherichia coli RPS1. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Probab=21.74 E-value=1.3e+02 Score=22.30 Aligned_cols=28 Identities=18% Similarity=0.469 Sum_probs=21.6
Q ss_pred EEEEEEeeeecCCCceEEEEEEeCCeEEEEEEee
Q 013865 108 LIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATV 141 (435)
Q Consensus 108 ~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~ 141 (435)
.+.|+|.++...| +|+.|-++ +.+++..
T Consensus 3 ~~~g~V~~i~~~G---~fv~l~~~---~~Glv~~ 30 (69)
T cd05690 3 VVSGKIKSITDFG---IFVGLDGG---IDGLVHI 30 (69)
T ss_pred EEEEEEEEEEeee---EEEEeCCC---CEEEEEH
Confidence 3789999999988 89999653 5666654
No 277
>PRK05853 hypothetical protein; Validated
Probab=21.44 E-value=5e+02 Score=23.75 Aligned_cols=53 Identities=15% Similarity=0.136 Sum_probs=34.5
Q ss_pred CeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCcc-cCCCc-eeEEEEEeEE
Q 013865 132 VSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVE-IKGAT-QQVEVQIKKL 190 (435)
Q Consensus 132 ~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~~-~~~~t-~~lEi~v~~i 190 (435)
+.-+.|++-.+ ......+.|.+|+-|.|+|.+....-. ..+.+ ..+||.+++|
T Consensus 42 T~wi~V~~wg~------lAe~v~~~L~KG~~V~V~GrL~~~~wedkdG~~r~~~eV~a~~V 96 (161)
T PRK05853 42 SLFITVNCWGR------LVTGVGAALGKGAPVIVVGHVYTSEYEDRDGNRRSSLEMRATSV 96 (161)
T ss_pred ccEEEEEEEhH------HHHHHHHHcCCCCEEEEEEEEEccceECCCCCEEEEEEEEEEEe
Confidence 44577777632 112345779999999999999754221 22443 3488888876
No 278
>PRK00252 alaS alanyl-tRNA synthetase; Reviewed
Probab=20.32 E-value=2.5e+02 Score=32.63 Aligned_cols=97 Identities=20% Similarity=0.339 Sum_probs=60.3
Q ss_pred HHHHHHHHHHhhcCCeEEeeCceeeccC------CCCCcceeEeccCCCceeeccChHHHHhhhccCCCceeEEEeccee
Q 013865 252 SQVGNIFRQFLLSENFVEIHTPKLIAGS------SEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFR 325 (435)
Q Consensus 252 s~i~~~~r~fl~~~gF~EV~TP~l~~~~------~egga~~F~v~~~~~~~~L~~Spql~lq~~i~~g~~rVfeIgp~FR 325 (435)
+.|-+.|-+||.++|-.-|..--+++.. +..|..+| +++||-+.+ -...|+=..-+|.|
T Consensus 5 ~eiR~~fl~fF~~~~H~~v~s~~lvp~~d~~llf~nAGm~~f------k~~f~g~~~---------p~~~r~~~~QkCiR 69 (865)
T PRK00252 5 AEIRQKFLDFFESKGHTVVPSASLVPKNDPTLLFTNAGMVQF------KDYFLGQEK---------PPYPRATTSQKCIR 69 (865)
T ss_pred HHHHHHHHHHHHhCCCEEecCCCcCCCCCCCeeeeccchhhh------hHHhcCCCC---------CCCCCccccccccc
Confidence 4567788899999998888766555411 11122333 223332222 12467778889999
Q ss_pred cCC----CCCCccccccccceeeeeccccH-HHHHHHHHHHHHH
Q 013865 326 AED----SYTHRHLCEFTGLDVEMEIKKHY-SEVMDIVDRLFVT 364 (435)
Q Consensus 326 ~E~----s~t~rHl~EFt~lE~e~a~~~~~-~d~m~~~e~li~~ 364 (435)
+-+ ..|.||.+=|.||-- ++|.+.+ ++.+.++=+|+..
T Consensus 70 ~nDld~VG~t~rHhTfFEMlGn-~sfgdYfK~eai~~awe~lt~ 112 (865)
T PRK00252 70 TNDLENVGYTARHHTFFEMLGN-FSFGDYFKEEAIEWAWELLTS 112 (865)
T ss_pred ccchhhccCCCCchHHHHHhcc-cchhhhhHHHHHHHHHHHHHH
Confidence 843 458999998888864 5665422 4677777666654
Done!