Query 013865
Match_columns 435
No_of_seqs 333 out of 1618
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 18:33:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013865.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013865hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3i7f_A Aspartyl-tRNA synthetas 100.0 3.6E-84 1.2E-88 683.3 37.6 368 54-434 22-429 (548)
2 1eov_A ASPRS, aspartyl-tRNA sy 100.0 6.1E-76 2.1E-80 617.7 39.3 357 61-434 2-366 (487)
3 3nem_A Aspartyl-tRNA synthetas 100.0 3.9E-75 1.3E-79 603.8 34.9 314 93-434 5-319 (438)
4 3bju_A Lysyl-tRNA synthetase; 100.0 1.1E-72 3.8E-77 596.6 26.1 327 76-432 24-359 (521)
5 3m4p_A Ehasnrs, asparaginyl-tR 100.0 3.9E-71 1.3E-75 576.4 32.8 315 89-433 16-340 (456)
6 4ex5_A Lysine--tRNA ligase; st 100.0 1.2E-69 4.2E-74 571.6 26.6 310 60-408 35-357 (529)
7 1wyd_A Hypothetical aspartyl-t 100.0 9E-69 3.1E-73 555.4 31.6 309 93-434 5-314 (429)
8 2xgt_A Asparaginyl-tRNA synthe 100.0 1.8E-68 6.1E-73 554.5 29.3 307 94-433 2-319 (435)
9 1e1o_A Lysyl-tRNA synthetase, 100.0 1.8E-68 6.3E-73 562.1 25.4 296 76-408 32-336 (504)
10 1x54_A Asparaginyl-tRNA synthe 100.0 5.1E-68 1.8E-72 550.7 28.3 310 93-432 5-316 (434)
11 1n9w_A Aspartyl-tRNA synthetas 100.0 2.1E-67 7.1E-72 544.2 28.4 300 93-433 3-304 (422)
12 3a74_A Lysyl-tRNA synthetase; 100.0 2.2E-67 7.4E-72 552.9 27.0 296 76-408 24-327 (493)
13 1l0w_A Aspartyl-tRNA synthetas 100.0 8.5E-64 2.9E-68 534.4 29.6 278 93-407 5-286 (580)
14 1c0a_A Aspartyl tRNA synthetas 100.0 2.6E-62 8.7E-67 524.1 29.6 270 93-407 4-279 (585)
15 4ah6_A Aspartate--tRNA ligase, 100.0 2.4E-60 8.1E-65 507.8 27.9 274 93-413 13-292 (617)
16 3a5y_A GENX, putative lysyl-tR 100.0 5E-42 1.7E-46 346.0 15.7 170 238-434 27-222 (345)
17 1nnh_A Asparaginyl-tRNA synthe 100.0 2.8E-37 9.6E-42 305.5 15.2 157 233-405 1-168 (294)
18 3qtc_A Pyrrolysyl-tRNA synthet 99.9 6.3E-25 2.2E-29 216.5 2.3 165 178-365 22-206 (290)
19 2rhq_A Phenylalanyl-tRNA synth 99.1 4.2E-10 1.4E-14 110.9 10.9 113 251-367 55-185 (294)
20 1b7y_A Phers, protein (phenyla 99.0 2.1E-09 7.1E-14 108.3 10.9 113 252-367 104-246 (350)
21 12as_A Asparagine synthetase; 98.8 5.5E-08 1.9E-12 95.4 13.3 154 248-407 5-177 (330)
22 3dsq_A Pyrrolysyl-tRNA synthet 98.8 7.5E-09 2.6E-13 101.7 7.1 112 252-365 74-202 (288)
23 2dq3_A Seryl-tRNA synthetase; 98.3 3.3E-06 1.1E-10 87.1 11.1 114 246-363 170-304 (425)
24 1evl_A Threonyl-tRNA synthetas 98.2 2E-06 6.9E-11 87.7 8.9 108 246-356 28-154 (401)
25 1qe0_A Histidyl-tRNA synthetas 98.2 1.4E-06 4.8E-11 89.1 7.6 118 246-364 14-153 (420)
26 3pco_A Phenylalanyl-tRNA synth 98.2 1.8E-06 6.3E-11 86.0 7.7 110 254-367 112-236 (327)
27 2i4l_A Proline-tRNA ligase; al 98.2 5.8E-06 2E-10 86.0 10.6 104 246-349 65-186 (458)
28 1z7m_A ATP phosphoribosyltrans 98.2 5.3E-06 1.8E-10 83.2 9.9 117 246-363 34-168 (344)
29 1wu7_A Histidyl-tRNA synthetas 98.1 1.2E-05 4E-10 82.8 12.0 104 246-350 18-134 (434)
30 1nyr_A Threonyl-tRNA synthetas 98.1 7.7E-06 2.6E-10 88.5 9.2 101 246-348 269-390 (645)
31 1h4v_B Histidyl-tRNA synthetas 98.1 1.3E-05 4.6E-10 81.9 10.4 116 247-363 16-152 (421)
32 1hc7_A Prolyl-tRNA synthetase; 98.0 2E-05 6.9E-10 82.4 11.6 115 246-361 42-178 (477)
33 3od1_A ATP phosphoribosyltrans 98.0 1.6E-05 5.5E-10 81.3 10.3 118 246-364 22-155 (400)
34 1htt_A Histidyl-tRNA synthetas 98.0 1.3E-05 4.6E-10 81.9 9.1 116 247-363 17-152 (423)
35 4e51_A Histidine--tRNA ligase; 98.0 1.4E-05 4.8E-10 83.3 9.3 118 246-364 44-182 (467)
36 3net_A Histidyl-tRNA synthetas 98.0 9.4E-06 3.2E-10 84.5 7.4 119 246-365 24-175 (465)
37 2j3l_A Prolyl-tRNA synthetase; 97.9 2.9E-05 1E-09 82.7 10.3 111 246-359 45-175 (572)
38 1nj8_A Proline-tRNA synthetase 97.9 4.1E-05 1.4E-09 79.6 11.2 111 246-357 36-170 (459)
39 3rac_A Histidine-tRNA ligase; 97.9 3.3E-05 1.1E-09 78.3 10.1 117 248-364 37-176 (373)
40 3lc0_A Histidyl-tRNA synthetas 97.9 4E-05 1.4E-09 79.7 10.5 116 247-364 42-175 (456)
41 1ses_A Seryl-tRNA synthetase; 97.9 7.7E-05 2.6E-09 76.8 12.5 115 246-362 164-299 (421)
42 3uh0_A Threonyl-tRNA synthetas 97.9 3.8E-05 1.3E-09 79.9 10.2 115 246-362 62-198 (460)
43 3vbb_A Seryl-tRNA synthetase, 97.9 5.1E-05 1.7E-09 79.8 11.0 100 246-345 199-328 (522)
44 2dq0_A Seryl-tRNA synthetase; 97.9 3.2E-05 1.1E-09 80.4 9.5 114 246-363 191-325 (455)
45 1qf6_A THRRS, threonyl-tRNA sy 97.8 3.9E-05 1.3E-09 83.0 9.6 102 246-349 269-389 (642)
46 1nj1_A PROR, proline-tRNA synt 97.8 4.3E-05 1.5E-09 80.4 9.2 115 246-362 69-207 (501)
47 3l4g_A Phenylalanyl-tRNA synth 97.8 3.5E-05 1.2E-09 80.8 8.2 50 315-365 348-398 (508)
48 3err_A Fusion protein of micro 97.8 0.00014 4.7E-09 77.0 12.7 118 245-364 272-410 (536)
49 3a32_A Probable threonyl-tRNA 97.7 6.4E-05 2.2E-09 78.3 9.0 102 246-347 47-169 (471)
50 3lss_A Seryl-tRNA synthetase; 97.7 9.9E-05 3.4E-09 77.0 9.8 117 245-363 205-344 (484)
51 4g84_A Histidine--tRNA ligase, 97.7 0.00015 5.3E-09 74.8 11.1 118 246-364 26-159 (464)
52 3ial_A Prolyl-tRNA synthetase; 97.7 8.2E-05 2.8E-09 78.4 8.7 116 246-362 53-191 (518)
53 1usy_A ATP phosphoribosyltrans 97.7 0.0001 3.6E-09 71.4 8.9 105 254-364 6-119 (275)
54 3qne_A Seryl-tRNA synthetase, 97.7 0.00012 4E-09 76.5 9.6 116 246-363 183-321 (485)
55 1wle_A Seryl-tRNA synthetase; 97.7 0.00019 6.6E-09 75.3 11.2 119 246-364 217-357 (501)
56 4g85_A Histidine-tRNA ligase, 97.6 0.00015 5E-09 76.4 10.0 118 246-364 79-212 (517)
57 2cja_A Seryl-tRNA synthetase; 97.6 0.00017 5.7E-09 76.1 9.5 115 246-362 229-393 (522)
58 4hvc_A Bifunctional glutamate/ 97.6 0.00015 5.2E-09 76.4 9.3 117 246-363 59-198 (519)
59 3mf2_A BLL0957 protein; aminoa 97.1 0.00093 3.2E-08 66.6 8.2 118 245-365 61-217 (346)
60 1ati_A Glycyl-tRNA synthetase; 97.1 0.00081 2.8E-08 70.7 7.7 34 246-279 37-72 (505)
61 2du7_A O-phosphoseryl-tRNA syn 97.0 0.002 6.9E-08 67.9 10.1 50 316-365 219-269 (549)
62 2du3_A O-phosphoseryl-tRNA syn 97.0 0.0015 5.1E-08 68.9 8.2 51 315-365 206-257 (534)
63 3cmq_A Phenylalanyl-tRNA synth 96.9 0.0027 9.3E-08 65.1 10.0 88 254-344 53-161 (415)
64 2zt5_A Glycyl-tRNA synthetase; 96.8 0.0016 5.6E-08 70.9 6.9 32 246-277 99-131 (693)
65 2odr_B Phosphoseryl-tRNA synth 96.6 0.0041 1.4E-07 66.3 8.4 51 315-365 225-276 (648)
66 2k50_A Replication factor A re 96.6 0.0075 2.6E-07 50.3 8.5 89 93-196 8-105 (115)
67 2odr_A Phosphoseryl-tRNA synth 96.6 0.0044 1.5E-07 66.3 8.4 51 315-365 225-276 (665)
68 2odr_D Phosphoseryl-tRNA synth 96.6 0.0045 1.6E-07 66.2 8.4 51 315-365 225-276 (685)
69 2odr_C Phosphoseryl-tRNA synth 96.5 0.0052 1.8E-07 65.9 8.2 51 315-365 225-276 (701)
70 3ikl_A DNA polymerase subunit 96.4 0.0057 1.9E-07 63.4 8.0 91 248-345 104-209 (459)
71 3kf6_A Protein STN1; OB fold, 96.4 0.038 1.3E-06 49.2 11.9 80 105-195 48-128 (159)
72 1ynx_A Replication factor-A pr 96.3 0.021 7E-07 47.9 9.2 97 91-196 3-109 (114)
73 3dm3_A Replication factor A; p 96.2 0.092 3.1E-06 43.4 12.6 89 90-196 3-100 (105)
74 1g5h_A Mitochondrial DNA polym 96.1 0.013 4.3E-07 60.8 8.5 116 247-364 61-216 (454)
75 3kdf_D Replication protein A 3 95.6 0.09 3.1E-06 45.0 10.5 79 105-195 32-111 (132)
76 3e0e_A Replication protein A; 95.6 0.19 6.6E-06 40.7 11.9 83 94-196 4-96 (97)
77 3ig2_A Phenylalanyl-tRNA synth 95.5 0.057 1.9E-06 50.0 9.6 113 253-365 8-151 (213)
78 3l4g_B Phenylalanyl-tRNA synth 95.4 0.049 1.7E-06 58.2 9.8 112 253-365 395-522 (589)
79 3au7_A TIAS, putative uncharac 95.2 0.19 6.5E-06 51.1 13.0 80 101-196 281-362 (402)
80 4gop_B Putative uncharacterize 95.1 0.16 5.4E-06 43.7 10.4 79 105-194 37-115 (136)
81 1nnx_A Protein YGIW; structura 95.1 0.084 2.9E-06 44.1 8.2 81 94-194 27-108 (109)
82 2rhq_B Phenylalanyl-tRNA synth 94.6 0.2 6.7E-06 55.4 12.1 111 253-365 497-632 (795)
83 3ica_A Phenylalanyl-tRNA synth 94.6 0.25 8.7E-06 45.6 11.1 113 253-365 8-151 (213)
84 1o7i_A SSB, SSO2364, single st 93.8 0.44 1.5E-05 39.8 10.1 89 93-201 3-103 (119)
85 1jmc_A Protein (replication pr 92.9 0.32 1.1E-05 45.5 8.7 98 90-196 6-113 (246)
86 2kbn_A Conserved protein; nucl 91.6 1.2 4.2E-05 36.6 9.6 87 92-196 5-94 (109)
87 1txy_A Primosomal replication 91.3 2.6 8.9E-05 34.2 11.3 53 135-195 50-102 (104)
88 2pi2_A Replication protein A 3 90.9 1.3 4.3E-05 42.4 10.4 79 105-195 72-151 (270)
89 3kdf_A Replication protein A 1 90.7 1.2 4.2E-05 37.6 8.8 72 100-195 18-89 (121)
90 2hpi_A DNA polymerase III alph 90.0 0.46 1.6E-05 54.7 7.3 79 102-194 1040-1122(1220)
91 1b7y_B Phers, protein (phenyla 89.8 1.4 4.7E-05 48.6 10.8 105 252-365 492-620 (785)
92 4gop_C Putative uncharacterize 89.1 0.67 2.3E-05 47.4 7.2 96 92-196 3-108 (444)
93 2k75_A Uncharacterized protein 88.7 3.7 0.00013 33.5 10.2 89 92-202 3-100 (106)
94 3kf8_A Protein STN1; OB fold; 88.2 3.1 0.00011 38.7 10.4 89 105-196 86-185 (220)
95 3vdy_A SSB, single-stranded DN 87.8 7.3 0.00025 32.0 11.6 58 133-196 50-109 (116)
96 3fhw_A Primosomal replication 87.8 10 0.00034 31.6 12.4 56 134-200 48-104 (115)
97 3tqy_A Single-stranded DNA-bin 87.8 6.8 0.00023 34.4 11.9 57 133-196 56-115 (158)
98 2vw9_A Single-stranded DNA bin 87.2 6.5 0.00022 33.4 11.2 57 133-196 49-108 (134)
99 4gop_A Putative uncharacterize 82.9 2.6 8.8E-05 35.1 6.4 54 101-171 15-69 (114)
100 1z9f_A Single-strand binding p 82.8 13 0.00043 32.5 11.1 58 133-196 63-122 (153)
101 2pi2_E Replication protein A 1 82.4 6.7 0.00023 34.0 9.0 57 100-171 39-96 (142)
102 3f2b_A DNA-directed DNA polyme 81.2 12 0.00042 42.3 12.9 92 93-195 8-103 (1041)
103 3ulp_A Single-strand binding p 77.9 29 0.00098 28.8 11.6 56 134-195 55-119 (124)
104 1j6q_A Cytochrome C maturation 76.7 22 0.00076 30.4 10.4 73 101-196 29-106 (136)
105 1sr3_A APO-CCME; OB fold, beta 75.6 17 0.00058 31.2 9.3 75 101-198 25-104 (136)
106 1qvc_A Single stranded DNA bin 75.1 26 0.0009 30.0 10.7 84 106-196 7-115 (145)
107 2fxq_A Single-strand binding p 72.4 21 0.00071 33.6 10.2 85 105-196 129-230 (264)
108 2fxq_A Single-strand binding p 72.0 33 0.0011 32.2 11.5 57 134-196 53-110 (264)
109 1se8_A Single-strand binding p 71.3 31 0.0011 33.3 11.2 83 106-195 131-233 (301)
110 3lgj_A Single-stranded DNA-bin 68.8 58 0.002 28.6 11.6 85 106-196 25-135 (169)
111 4gs3_A Single-stranded DNA-bin 68.1 44 0.0015 27.3 9.9 80 105-194 12-106 (107)
112 1gm5_A RECG; helicase, replica 68.0 2.8 9.5E-05 46.2 3.3 66 98-171 159-229 (780)
113 1se8_A Single-strand binding p 67.2 42 0.0014 32.4 11.2 57 134-196 53-112 (301)
114 3k8a_A Putative primosomal rep 64.4 55 0.0019 26.4 11.9 47 135-193 55-101 (103)
115 3eiv_A Single-stranded DNA-bin 64.1 85 0.0029 28.5 12.5 54 133-192 53-108 (199)
116 3pco_B Phenylalanyl-tRNA synth 63.9 7.8 0.00027 42.7 5.8 111 254-365 494-628 (795)
117 3pgz_A Single-stranded DNA-bin 61.4 76 0.0026 28.7 11.0 57 134-196 75-138 (193)
118 3mxn_B RECQ-mediated genome in 60.9 70 0.0024 27.7 10.0 74 104-196 58-131 (150)
119 1wjj_A Hypothetical protein F2 58.7 42 0.0014 28.9 8.5 89 90-196 14-120 (145)
120 3afp_A Single-stranded DNA-bin 54.0 1.1E+02 0.0038 26.6 12.0 52 133-190 53-106 (168)
121 4dam_A Single-stranded DNA-bin 51.0 1.1E+02 0.0037 25.6 9.7 53 133-191 63-116 (128)
122 3ull_A DNA binding protein; DN 50.8 21 0.00072 30.0 5.2 43 154-196 83-127 (132)
123 2k52_A Uncharacterized protein 47.4 53 0.0018 24.7 6.6 52 103-167 5-56 (80)
124 3koj_A Uncharacterized protein 46.7 1.2E+02 0.0039 24.7 12.3 80 105-191 12-107 (108)
125 1ou8_A Stringent starvation pr 37.3 32 0.0011 28.4 4.0 54 250-308 8-62 (111)
126 2kqr_A Asparaginyl-tRNA synthe 37.2 12 0.0004 31.2 1.3 23 19-41 54-76 (113)
127 1yfn_A Stringent starvation pr 36.7 36 0.0012 28.5 4.2 55 250-309 9-64 (118)
128 3en2_A Probable primosomal rep 34.3 1.5E+02 0.0053 23.7 7.6 48 133-191 48-95 (101)
129 1kl9_A Eukaryotic translation 34.3 50 0.0017 29.4 5.2 56 103-166 15-71 (182)
130 2eqs_A ATP-dependent RNA helic 33.3 37 0.0013 27.1 3.8 60 102-167 11-71 (103)
131 1ou9_A Stringent starvation pr 32.9 40 0.0014 28.6 3.9 54 250-308 8-62 (129)
132 1v1q_A Primosomal replication 31.0 91 0.0031 26.4 6.0 55 134-196 66-120 (134)
133 2k4k_A GSP13, general stress p 30.3 50 0.0017 27.5 4.3 54 103-166 7-61 (130)
134 2kct_A Cytochrome C-type bioge 29.5 2.1E+02 0.0072 22.6 8.9 73 101-196 5-85 (94)
135 2khi_A 30S ribosomal protein S 27.9 32 0.0011 28.0 2.5 57 102-166 29-85 (115)
136 2b29_A Replication protein A 7 27.2 2.1E+02 0.0071 23.7 7.5 62 125-196 46-108 (123)
137 2a19_A EIF-2- alpha, eukaryoti 26.2 59 0.002 28.7 4.1 56 103-166 15-71 (175)
138 3f1z_A Putative nucleic acid-b 25.3 1.1E+02 0.0038 24.5 5.1 66 100-171 45-117 (133)
139 1eqq_A Single stranded DNA bin 24.6 37 0.0013 30.2 2.5 55 134-195 55-115 (178)
140 1xjv_A Protection of telomeres 23.3 2E+02 0.0067 27.2 7.6 69 92-170 6-81 (294)
141 3hy0_A Alanyl-tRNA synthetase; 22.8 2.4E+02 0.0082 28.7 8.3 96 252-363 5-115 (441)
142 1wi5_A RRP5 protein homolog; S 22.7 1.4E+02 0.0047 24.1 5.6 52 102-166 20-77 (119)
No 1
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=100.00 E-value=3.6e-84 Score=683.30 Aligned_cols=368 Identities=43% Similarity=0.689 Sum_probs=315.9
Q ss_pred ccccCCCCCCcccCChhhhhccCCCCCCcccccccCcceEEeccccCCCCCCEEEEEEEEeeeecCCCceEEEEEEeCCe
Q 013865 54 IEEEGPLANNYGDVPLQELQSVNDPQTGKWSEAVNGREWTVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVS 133 (435)
Q Consensus 54 ~~~~d~~~~~Yg~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~ 133 (435)
.+++|.++++||++|+.|+|.. ..++++|+.|++|...+.|++|+|+|||+++|.+| |++|++|||+++
T Consensus 22 ~~~~~~~~~~yg~~~~~~~~~~----------~~~~~~~~~i~~l~~~~~g~~V~v~Gwv~~~R~~g-kl~Fi~LrD~~g 90 (548)
T 3i7f_A 22 KTPELVSGENFKVMPMHQSQPC----------YKTGLKYTEIEELVPAMAEKTVTIRARVQAVRGKG-NMVFLFLRKGIY 90 (548)
T ss_dssp BCCCCCCCSSEEECCCCSSCGG----------GCCCCCBCCGGGCSGGGTTCEEEEEEEEEEEEECS-SEEEEEEEETTE
T ss_pred ccccchhhhhcCcCcccccccc----------ccCCCceEEhhhcchhcCCCEEEEEEEEEEEecCC-CeEEEEEEECCe
Confidence 4567899999999999987721 24678999999999889999999999999999999 999999999999
Q ss_pred EEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCcccCCCc-eeEEEEEeEEEEeecC-CCCCcccccccchHH
Q 013865 134 TVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGAT-QQVEVQIKKLYCVSRA-AKTPITIEDASRSEA 211 (435)
Q Consensus 134 ~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~~~~~~t-~~lEi~v~~i~vls~~-~~lP~~~~d~~~~~~ 211 (435)
+||||++.+. .++++|++|++.|+.||+|.|+|+|.+++.++++++ |++||++++|+|||+| .+||++++|+++++.
T Consensus 91 ~iQ~v~~~~~-~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~~~~~~El~~~~i~vls~a~~~lP~~~~d~~~~~~ 169 (548)
T 3i7f_A 91 TCQALVMKSE-TISKEFVQFCQKISAESICDITGIVKAVEKPIEKATQQDVEIHVTSIAVVSLAEYPLPMQIEDLTFPSS 169 (548)
T ss_dssp EEEEEEECSS-SSCHHHHHHHHTCCTTEEEEEEEEEEECSSCCTTSSSCSEEEEEEEEEEEECCCBSCSSCSGGGSCCHH
T ss_pred eEEEEEECCC-ccCHHHHHHHhCCCCCCEEEEEEEEEeCCcccccCCCCcEEEEEeEEEEEecCCCCCCCCchhcccccc
Confidence 9999998643 367899999999999999999999999877776774 8899999999999999 899999999988765
Q ss_pred HHHhh--------------------------------------hhcCCCCCCCCccccccccccccccHHHHHHHHHHHH
Q 013865 212 EIEKA--------------------------------------SKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQ 253 (435)
Q Consensus 212 ~~~~~--------------------------------------~~~~~~~~~~~~etrl~~R~Ldlr~~~~~~i~~~rs~ 253 (435)
+.++. ......++.+++++||+|||||||++.++++|++||.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~e~rl~~R~LdLR~~~~~~~~r~Rs~ 249 (548)
T 3i7f_A 170 VFKKQEEDIAKVDEKIAKFLKDNEGKDLTKRPLKDEYAKLLKEKASAQKYVKVSQDTRLDNRMLDLRTVTNIAIFRIQSA 249 (548)
T ss_dssp HHHHHHHHTTCC-------------------------------CCCCCCCCCCCHHHHHTTHHHHTTSHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccCCHHHhhhchhhccCCHHHHHHHHHHHH
Confidence 43321 0001234568999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCeEEeeCceeeccCCCCCcceeEeccCCCceeeccChHHHHhhhccCCCceeEEEecceecCCCCCCc
Q 013865 254 VGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHR 333 (435)
Q Consensus 254 i~~~~r~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~~~~~~~L~~Spql~lq~~i~~g~~rVfeIgp~FR~E~s~t~r 333 (435)
|+++||+||.++||+||+||+|+++++|||+++|.++||+.++||+||||||||+++++|++|||+||||||||+++|+|
T Consensus 250 i~~~iR~ff~~~gF~EVeTPiL~~~~~egga~~F~v~~~~~~~yL~~Spql~~k~ll~~g~~rVfeI~~~FR~E~~~t~R 329 (548)
T 3i7f_A 250 CCGLFREFLTSQKFVEIHTPKLIGCSSEGGSNIFEVKYFDRKAYLAQSPQLYKQMAIMGDFRKVFEVGPVFRAENSNTRR 329 (548)
T ss_dssp HHHHHHHHHHHTTCEECCCCSBC-------------------CCBCSCTHHHHHHHHTTTCCEEEEEEEECCCSCCCSSS
T ss_pred HHHHHHHHHHhCCCEEEeCCEEecccCCCCcceeEEecCCCceEeccCHHHHHHHHHhcCcCcEEEEeeeEecCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccceeeeeccccHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhcCCCcccCCCCCCceeeHHHHHHHHHHcCCC
Q 013865 334 HLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKDAGVE 413 (435)
Q Consensus 334 Hl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~rit~~eai~lL~~~g~~ 413 (435)
||||||||||||+|.++|+|+|+++|+||+++++.+.++|..+++.++.+++...+.+ .||+||||.||+++|++.|++
T Consensus 330 Hl~EFtmlE~e~af~~d~~d~m~~~E~li~~i~~~~~~~~~~el~~~~~~~~~~~~~~-~pf~rit~~eai~~l~~~g~~ 408 (548)
T 3i7f_A 330 HLTEFEGLDIEMEIVENYHECIDVMEKLFTFIFDEIPKRFPDELKVIRKQYPFEDLIY-RPFLRLTYKEAIEMLRASGET 408 (548)
T ss_dssp CCSCEEEEEEEEECSSCTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHSCCCCCCC-CSCEEEEHHHHHHHHHHTTCC
T ss_pred cchhhhchhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhcCCcccccc-CCcceeEHHHHHHHHHHcCCC
Confidence 9999999999999986799999999999999999999999999988888888777766 799999999999999999999
Q ss_pred CCCCCCCCcHHHHHHHHHhhc
Q 013865 414 IDPLGDLNTESERKLGQLVLE 434 (435)
Q Consensus 414 ~~~~~dl~te~E~~L~~~vke 434 (435)
++|++||++++|+.|+++|.+
T Consensus 409 ~~~~~dl~~~~e~~l~~~i~~ 429 (548)
T 3i7f_A 409 IGDYDDFTTPQEVKLGELIKA 429 (548)
T ss_dssp CCTTCCCCHHHHHHHHHHHHH
T ss_pred CCCccccchHHHHHHHHHHHH
Confidence 999999999999999999865
No 2
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=100.00 E-value=6.1e-76 Score=617.72 Aligned_cols=357 Identities=49% Similarity=0.767 Sum_probs=317.1
Q ss_pred CCCcccCChhhhh--ccCCCCCCcccccccCcceEEeccccCC-CCCCEEEEEEEEeeeecCCCceEEEEEEeCCeEEEE
Q 013865 61 ANNYGDVPLQELQ--SVNDPQTGKWSEAVNGREWTVVGALNGS-LKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQC 137 (435)
Q Consensus 61 ~~~Yg~~~~~~~~--~~~~~~p~~~~~~~~~~~~~~i~~l~~~-~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQv 137 (435)
+++||++|+.|++ . .+..+++.|++|... +.|++|+|+|||+++|.+|+.|+|++|||+++.|||
T Consensus 2 ~~~yG~~~~~~s~~~~------------~~~~~~~~~~~l~~~~~~g~~V~v~GwV~~~R~~g~~l~Fi~LrD~~g~iQv 69 (487)
T 1eov_A 2 KDNYGKLPLIQSRDSD------------RTGQKRVKFVDLDEAKDSDKEVLFRARVHNTRQQGATLAFLTLRQQASLIQG 69 (487)
T ss_dssp CSSEEECCCCCCCGGG------------CCCCCCCCGGGCCTTTTTTCEEEEEEEEEEEEECSSSEEEEEEEETTEEEEE
T ss_pred Cccccccccccccccc------------ccccceeEHHHhcccccCCCEEEEEEEEEEeeccCCccEEEEEEECCccEEE
Confidence 5689999999775 3 245677889998776 889999999999999999954599999999999999
Q ss_pred EEeeCCCC-CcHHHHHHHhcCCCCcEEEEEEEEecCCcccCCC-ceeEEEEEeEEEEeecC-CCCCcccccccchHHHHH
Q 013865 138 LATVKPDS-VSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGA-TQQVEVQIKKLYCVSRA-AKTPITIEDASRSEAEIE 214 (435)
Q Consensus 138 v~~~~~~~-~s~~~~k~~~~l~~esiV~V~G~v~~~~~~~~~~-t~~lEi~v~~i~vls~~-~~lP~~~~d~~~~~~~~~ 214 (435)
|++.+... ++++++++++.|+.||+|.|+|+|..++.+++++ +|++||++++|.|||+| ++||++++++++.+.+.
T Consensus 70 v~~~~~~~~~~~~~~~~~~~l~~e~~V~V~G~v~~~~~~~~~~~~g~~El~~~~i~vl~~a~~~lP~~~~~~~~~~~~~- 148 (487)
T 1eov_A 70 LVKANKEGTISKNMVKWAGSLNLESIVLVRGIVKKVDEPIKSATVQNLEIHITKIYTISETPEALPILLEDASRSEAEA- 148 (487)
T ss_dssp EEECCSSSSSCHHHHHHHTTCCTTCEEEEEEEEEECSSCCTTSSEEEEEEEEEEEEEEECCCSSCSSCHHHHTSCHHHH-
T ss_pred EEeccccccccHHHHHHHhcCCCCCEEEEEEEEEeCCCCCcCCCCCcEEEEEEEEEEeecccccCCcchhhcccccccc-
Confidence 99864322 5678889999999999999999998876544433 48899999999999999 89999988765422100
Q ss_pred hhhhcCCCCCCCCccccccccccccccHHHHHHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCCCCCcceeEeccCCC
Q 013865 215 KASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQ 294 (435)
Q Consensus 215 ~~~~~~~~~~~~~~etrl~~R~Ldlr~~~~~~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~~~~ 294 (435)
+...++++++|+||+|||||||++.++++|++||.|++++|+||.++||+||+||+|+++++++||++|.++|||+
T Consensus 149 ----~~~~~~~~~~e~r~~~R~LdLr~~~~~~~~~~rs~i~~~ir~~~~~~gF~EV~TPil~~~~~~~ga~~f~~~~~~~ 224 (487)
T 1eov_A 149 ----EAAGLPVVNLDTRLDYRVIDLRTVTNQAIFRIQAGVCELFREYLATKKFTEVHTPKLLGAPSEGGSSVFEVTYFKG 224 (487)
T ss_dssp ----HHTTCCCCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCSSSSSCCCEEEETTE
T ss_pred ----cccccccCChhhhhhcceeecCCHHHHHHHHHHHHHHHHHHHHHHhCCcEEEeCCEEEEecCCCCcccceeccCCc
Confidence 0123556899999999999999999999999999999999999999999999999999988999999999999999
Q ss_pred ceeeccChHHHHhhhccCCCceeEEEecceecCCCCCCccccccccceeeeeccccHHHHHHHHHHHHHHHHhhhhhhhH
Q 013865 295 SACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCK 374 (435)
Q Consensus 295 ~~~L~~Spql~lq~~i~~g~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~ 374 (435)
++||+||||||+|+++++|++|||+||||||||+++++||+||||||||||+|.++|+|+|+++|+||+++++.+.++|.
T Consensus 225 ~~~L~~Spql~~k~l~~~g~~rvy~ig~~FR~E~~~~~Rh~pEFt~le~e~af~~~~~dlm~l~E~ll~~l~~~v~~~~~ 304 (487)
T 1eov_A 225 KAYLAQSPQFNKQQLIVADFERVYEIGPVFRAENSNTHRHMTEFTGLDMEMAFEEHYHEVLDTLSELFVFIFSELPKRFA 304 (487)
T ss_dssp EEEECSCTHHHHHHHHHTTCCEEEEEEEEECCCCCCCTTCCSEEEEEEEEEECSSCTHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred cEEcccChHHHHHHHHhcCCCceEEEeccEecCCCCCCccchhhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHhhch
Confidence 99999999999999999999999999999999999999999999999999999866999999999999999999999999
Q ss_pred HHHHHhhhcCCCcccCCCC--CCceeeHHHHHHHHHHcCCCCCCCCCCCcHHHHHHHHHhhc
Q 013865 375 KELEAVAKQYPFEPLKYKP--KTLRLTFEEGVQMLKDAGVEIDPLGDLNTESERKLGQLVLE 434 (435)
Q Consensus 375 ~~l~~~~~~~~~~~~~~~~--p~~rit~~eai~lL~~~g~~~~~~~dl~te~E~~L~~~vke 434 (435)
.+|..+...++...+++.. ||+||||.||+++|++.|++++|+.|+++++|+.||+++.+
T Consensus 305 ~~l~~~~~~~~~~~~~~~~~~~~~ri~~~ea~~~l~~~g~~~~~~~d~~~~~e~~l~~~~~~ 366 (487)
T 1eov_A 305 HEIELVRKQYPVEEFKLPKDGKMVRLTYKEGIEMLRAAGKEIGDFEDLSTENEKFLGKLVRD 366 (487)
T ss_dssp HHHHHHHHHSCCCCCCCCTTCCCEEEEHHHHHHHHHHTTCCCCTTCCCCHHHHHHHHHHHHH
T ss_pred hHHHhhhhhcCCcceecccCCCeeEEEHHHHHHHHHHhCCCCCcccchhhHHHHHHHHHHHH
Confidence 9998888877776677765 89999999999999999999999999999999999998754
No 3
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=100.00 E-value=3.9e-75 Score=603.82 Aligned_cols=314 Identities=34% Similarity=0.525 Sum_probs=288.0
Q ss_pred EEeccccCCCCCCEEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecC
Q 013865 93 TVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVP 172 (435)
Q Consensus 93 ~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~ 172 (435)
+.|++|...+.|++|+|+|||+++|.+| |++|++|||+++.||||++.+ .++++++++++.|+.||+|.|+|+|..+
T Consensus 5 ~~~~~l~~~~~g~~V~v~Gwv~~~R~~g-~~~Fi~LrD~~g~iQ~v~~~~--~~~~~~~~~~~~l~~~~~V~V~G~v~~~ 81 (438)
T 3nem_A 5 HYSSEITEELNGQKVKVAGWVWEVKDLG-GIKFLWIRDRDGIVQITAPKK--KVDPELFKLIPKLRSEDVVAVEGVVNFT 81 (438)
T ss_dssp CCGGGCCGGGTTCEEEEEEEEEEEEEET-TEEEEEEEETTEEEEEEEETT--TSCHHHHHHGGGCCTTCEEEEEEEEEEC
T ss_pred EEHHHcchhcCCCEEEEEEEEEEEecCC-CeEEEEEEECCeeEEEEEeCC--cCCHHHHHHHhcCCCCCEEEEEEEEEeC
Confidence 5678888778899999999999999999 899999999999999999864 3567888999999999999999999876
Q ss_pred CcccCCCceeEEEEEeEEEEeecC-CCCCcccccccchHHHHHhhhhcCCCCCCCCccccccccccccccHHHHHHHHHH
Q 013865 173 DVEIKGATQQVEVQIKKLYCVSRA-AKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQ 251 (435)
Q Consensus 173 ~~~~~~~t~~lEi~v~~i~vls~~-~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~etrl~~R~Ldlr~~~~~~i~~~r 251 (435)
+. .+|++||++++|.+||+| .+||+++++. ..+++++|+++||||||++.++++|++|
T Consensus 82 ~~----~~~~~el~~~~i~vl~~~~~~lP~~~~~~-----------------~~~~~e~r~~~R~Ldlr~~~~~~~~~~R 140 (438)
T 3nem_A 82 PK----AKLGFEILPEKIVVLNRAETPLPLDPTGK-----------------VKAELDTRLDNRFMDLRRPEVMAIFKIR 140 (438)
T ss_dssp TT----STTSEEEEEEEEEEEECBCSSCSSCTTSS-----------------SCCCHHHHHHTHHHHTTSHHHHHHHHHH
T ss_pred CC----CCCcEEEEEEEEEEEecCCCCCCCCcccc-----------------ccCCHHHHhhchHHHhcCHHHHHHHHHH
Confidence 42 236899999999999999 8999987642 1267899999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCeEEeeCceeeccCCCCCcceeEeccCCCceeeccChHHHHhhhccCCCceeEEEecceecCCCCC
Q 013865 252 SQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYT 331 (435)
Q Consensus 252 s~i~~~~r~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~~~~~~~L~~Spql~lq~~i~~g~~rVfeIgp~FR~E~s~t 331 (435)
|.|++++|+||.++||+||+||+|+++++|||++.|.++|||+++||+||||||||+++++|++|||+||||||||++++
T Consensus 141 s~i~~~iR~f~~~~gF~EVeTPiL~~~~~eg~~~~f~~~~~~~~~yL~~Spql~~q~l~~~g~~rvf~i~~~FR~E~~~t 220 (438)
T 3nem_A 141 SSVFKAVRDFFHENGFIEIHTPKIIATATEGGTELFPMKYFEEDAFLAQSPQLYKQIMMASGLDRVYEIAPIFRAEEHNT 220 (438)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEESSCSSCSSSCCEEEETTEEEEECSCSHHHHHHGGGTTCCEEEEEEEEECCCSSCC
T ss_pred HHHHHHHHHHHHHCCcEEEeCCEEecCCCCCCccceeEeeCCccEEEecChHHHHHHHHhcCCCceEEEcceEECCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccccceeeeeccccHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhcCCCcccCCCCCCceeeHHHHHHHHHHcC
Q 013865 332 HRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKDAG 411 (435)
Q Consensus 332 ~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~rit~~eai~lL~~~g 411 (435)
.|||||||||||||+|.++|+|+|+++|+||+++++.+.++|..+++.++..++ .+..||+||||.||+++|++.|
T Consensus 221 ~RH~pEFt~le~e~a~~~~~~d~m~~~E~li~~~~~~v~~~~~~~l~~~~~~l~----~~~~pf~rity~eai~~l~~~g 296 (438)
T 3nem_A 221 TRHLNEAWSIDSEMAFIEDEEEVMSFLERLVAHAINYVREHNAKELDILNFELE----EPKLPFPRVSYDKALEILGDLG 296 (438)
T ss_dssp TTCCSEEEEEEEEEESCSSHHHHHHHHHHHHHHHHHHHHHHCHHHHHHTTCCCC----CCCSSCCEEEHHHHHHHHHHTT
T ss_pred cccccceeeeeeeeccCccHHHHHHHHHHHHHHHHHHHHhhhhhhHhhcccccc----cCCCCceEEEHHHHHHHHHHcC
Confidence 999999999999999997799999999999999999999988888877765432 1246899999999999999999
Q ss_pred CCCCCCCCCCcHHHHHHHHHhhc
Q 013865 412 VEIDPLGDLNTESERKLGQLVLE 434 (435)
Q Consensus 412 ~~~~~~~dl~te~E~~L~~~vke 434 (435)
++++|++||++++|++|++++.+
T Consensus 297 ~~~~~~~dl~~~~e~~l~~~~~~ 319 (438)
T 3nem_A 297 KEIPWGEDIDTEGERLLGKYMME 319 (438)
T ss_dssp CCCCTTSCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCcHHHHHHHHHhhh
Confidence 99999999999999999999864
No 4
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=100.00 E-value=1.1e-72 Score=596.64 Aligned_cols=327 Identities=21% Similarity=0.300 Sum_probs=269.1
Q ss_pred CCCCCCcccccccCcceE-Eecccc--CCCCCCEEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHH-HH
Q 013865 76 NDPQTGKWSEAVNGREWT-VVGALN--GSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKE-MV 151 (435)
Q Consensus 76 ~~~~p~~~~~~~~~~~~~-~i~~l~--~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~-~~ 151 (435)
.|||||+|.++++..++. .+.++. +...|++|+|+|||+++|.+|+|++|++|||+++.||||++.+.. .+++ +.
T Consensus 24 ~~pyp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~Grv~~~R~~gkk~~F~~LrD~sg~iQvv~~~~~~-~~~~~~~ 102 (521)
T 3bju_A 24 EDPYPHKFHVDISLTDFIQKYSHLQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNY-KSEEEFI 102 (521)
T ss_dssp CCSSCSCCCCCSCHHHHHHHHTTCCTTCBCSSCCEEEEEEEEEEEESSSSEEEEEEEETTEEEEEEEEGGGS-SCHHHHH
T ss_pred CCCCCCcCcCccchHHHHHHhhhhccccccCCcEEEEEEEEEEEecCCCCcEEEEEEECCEEEEEEEECCcc-CCHHHHH
Confidence 489999999998875542 333342 345689999999999999999899999999999999999986421 1333 33
Q ss_pred HHHhcCCCCcEEEEEEEEecCCcccCCCceeEEEEEeEEEEeecC-CCCCcccccccchHHHHHhhhhcCCCCCCCCccc
Q 013865 152 RFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRA-AKTPITIEDASRSEAEIEKASKEGVQLPRVNQDT 230 (435)
Q Consensus 152 k~~~~l~~esiV~V~G~v~~~~~~~~~~t~~lEi~v~~i~vls~~-~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~et 230 (435)
++.+.|+.||+|.|+|+|.+++ +|++||++++|.+|++| .+||++.. +..++++
T Consensus 103 ~~~~~l~~gd~V~V~G~v~~t~------~ge~ei~~~~i~~l~~~~~~lP~~~~-------------------~~~~~e~ 157 (521)
T 3bju_A 103 HINNKLRRGDIIGVQGNPGKTK------KGELSIIPYEITLLSPCLHMLPHLHF-------------------GLKDKET 157 (521)
T ss_dssp HHHHHCCTTCEEEEEEEEEECT------TCCEEEEEEEEEEEECCCSCCCCC-----------------------CCHHH
T ss_pred HHHhcCCCCCEEEEEEEEEecC------CCCEEEEEeEEEEeecCCCCCCCccc-------------------cccChhh
Confidence 4567899999999999998753 47899999999999999 89997633 2368899
Q ss_pred cccccccccc-cHHHHHHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCCCCCcceeEe--ccCCCceeeccChHHHHh
Q 013865 231 RLNNRVIDIR-TLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRL--DYKGQSACLAQSPQLHKQ 307 (435)
Q Consensus 231 rl~~R~Ldlr-~~~~~~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~egga~~F~v--~~~~~~~~L~~Spql~lq 307 (435)
|+++|||||| ++.++++|++||.|+++||+||.++||+||+||+|+++.+++++.+|.+ +|||.++||+||||||||
T Consensus 158 r~r~RyLdLr~~~~~~~~~r~Rs~i~~~iR~f~~~~gF~EVeTPiL~~~~gGa~a~~F~t~~~~~~~~~yL~~SpqL~lk 237 (521)
T 3bju_A 158 RYRQRYLDLILNDFVRQKFIIRSKIITYIRSFLDELGFLEIETPMMNIIPGGAVAKPFITYHNELDMNLYMRIAPELYHK 237 (521)
T ss_dssp HHHCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCCSSSCCCCEEEETTTTEEEEECSCSHHHHH
T ss_pred hhhhhhhhHhcCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCceeeccCCCccccceeeecccCCcceEeeCCHHHHHH
Confidence 9999999999 5999999999999999999999999999999999997654444679988 789999999999999999
Q ss_pred hhccCCCceeEEEecceecCCCCCCccccccccceeeeeccccHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhcCCCc
Q 013865 308 MSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFE 387 (435)
Q Consensus 308 ~~i~~g~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~ 387 (435)
++++||++||||||||||||++++ |||||||||||||||++ |+|+|+++|+||+++++.+.+.+...+...+.+.+..
T Consensus 238 ~liv~g~~rVyeig~~FR~E~~~t-rH~pEFtmlE~e~af~d-~~dlm~l~E~li~~v~~~v~~~~~~~~~~~~~d~~~~ 315 (521)
T 3bju_A 238 MLVVGGIDRVYEIGRQFRNEGIDL-THNPEFTTCEFYMAYAD-YHDLMEITEKMVSGMVKHITGSYKVTYHPDGPEGQAY 315 (521)
T ss_dssp HHHHTTCCEEEEEEEEECCSCCBT-TBCSEEEEEEEEEETCC-HHHHHHHHHHHHHHHHHHHHSSSEEEECTTCTTSCCE
T ss_pred HHHhcCcCceEEEEcceeCCCCCC-ccchhhhhhhhhhhcCC-HHHHHHHHHHHHHHHHHHHhCCceEEecccccccccc
Confidence 999999999999999999999866 99999999999999996 9999999999999999999876532221111111222
Q ss_pred ccCCCCCCceeeHHHHHHHHHHcCCCCCCCCCCCcHHH-HHHHHHh
Q 013865 388 PLKYKPKTLRLTFEEGVQMLKDAGVEIDPLGDLNTESE-RKLGQLV 432 (435)
Q Consensus 388 ~~~~~~p~~rit~~eai~lL~~~g~~~~~~~dl~te~E-~~L~~~v 432 (435)
.+++..||+||||.||++.+ .|+++++++||+++++ ..|.++.
T Consensus 316 ~~d~~~pf~rit~~eai~~~--~g~~~~~~~~l~~~~~~~~l~~~~ 359 (521)
T 3bju_A 316 DVDFTPPFRRINMVEELEKA--LGMKLPETNLFETEETRKILDDIC 359 (521)
T ss_dssp EEECCSSCEEEEHHHHHHHH--HTSCCCCGGGTTSHHHHHHHHHHH
T ss_pred eeccCCCcccccHHHHHHHH--hCCCCCccccCCcHHHHHHHHHHH
Confidence 45677899999999999854 4777777788988653 4444443
No 5
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=100.00 E-value=3.9e-71 Score=576.40 Aligned_cols=315 Identities=22% Similarity=0.364 Sum_probs=266.9
Q ss_pred CcceEEeccccCCCCCCEEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEE
Q 013865 89 GREWTVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGV 168 (435)
Q Consensus 89 ~~~~~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~ 168 (435)
..+++.|+++ ..+.|++|+|+|||+++|.+|++++|++|||+++.||||++.+. +++. ..+..|+.||+|.|+|+
T Consensus 16 ~~~~~~i~~~-~~~~g~~V~v~Gwv~~~R~~Gk~~~Fi~LrD~sg~iQvv~~~~~--~~~~--~~~~~l~~g~~V~V~G~ 90 (456)
T 3m4p_A 16 TPIVCNIRDA-AGLEGKLVTFKGWAYHIRKARKTLIFVELRDGSGYCQCVIFGKE--LCEP--EKVKLLTRECSLEITGR 90 (456)
T ss_dssp CCCCEECCST-TCCCSSEEEEEEEEEEEECCSSSEEEEEEECSSCEEEEEEESTT--TTCH--HHHTTCCTTCEEEEEEE
T ss_pred cceEEEhhhh-hhcCCCEEEEEEEEEEEecCCCceEEEEEEeCCccEEEEEeccc--chhh--HHhhcCCCccEEEEEeE
Confidence 4577899998 56889999999999999999978999999999999999998632 2221 23458999999999999
Q ss_pred EecCCccc---CCCc-eeEEEEEeEEEEeecC-CCCCcccccccchHHHHHhhhhcCCCCCCCCccccccccccccccHH
Q 013865 169 VSVPDVEI---KGAT-QQVEVQIKKLYCVSRA-AKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLA 243 (435)
Q Consensus 169 v~~~~~~~---~~~t-~~lEi~v~~i~vls~~-~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~etrl~~R~Ldlr~~~ 243 (435)
|..++... +.++ |++||++++|.||++| .++|.... ...++|+|+++||||||++.
T Consensus 91 v~~~~~~~~~~~~~t~g~~El~~~~i~vl~~a~~~~~~~~~-------------------~~~~~e~r~~~R~LdlR~~~ 151 (456)
T 3m4p_A 91 LNAYAGKNHPPEIADILNLEMQVTEWKVIGESPIDLENIIN-------------------KDSSIPQKMQNRHIVIRSEH 151 (456)
T ss_dssp EECCCSSSCCCSCTTBCSSEEEEEEEEEEECCCGGGTTTSC-------------------TTCCHHHHHHTHHHHTTSHH
T ss_pred EEecCCcccCcccCCCCcEEEEEeEEEEEecCCCCCccccc-------------------ccCCHHHHhhchHHhhhcHH
Confidence 98654321 1223 8899999999999999 55552211 23678999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCCCCCcceeEeccCCCceeeccChHHHHhhhccCCCceeEEEecc
Q 013865 244 NQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPV 323 (435)
Q Consensus 244 ~~~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~~~~~~~L~~Spql~lq~~i~~g~~rVfeIgp~ 323 (435)
++++|++||.|+++||+||.++||+||+||+|+++++|||+++|.++|||+++||+||||||||++++ |++|||+||||
T Consensus 152 ~~~~lr~Rs~i~~~iR~ff~~~gF~EVeTPiL~~s~~eGg~~~f~~~~~~~~~~L~~SpqL~lq~l~~-g~~rVyeig~~ 230 (456)
T 3m4p_A 152 TQQVLQLRSEIQWYFRKYYHDNHFTEIQPPTIVKTQCEGGSTLFKLQYFNEPAYLTQSSQLYLESVIA-SLGKSFCMLSS 230 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEC------CCCCEEEETTEEEEECSCCHHHHHTTHH-HHSSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCEEEeCCeeecCCCCCccccccccccCCCcccccCHHHHHHHHHh-ccCcEEEEEhh
Confidence 99999999999999999999999999999999998999999999999999999999999999999876 69999999999
Q ss_pred eecCCCCCCccccccccceeeeeccccHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhcCCCcccCCCCCCceeeHHHH
Q 013865 324 FRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEG 403 (435)
Q Consensus 324 FR~E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~rit~~ea 403 (435)
||||+++|.|||||||||||||+|++ |+|+|+++|+||+++++.+.+++...+..+...+. ....||+||||.||
T Consensus 231 FR~E~~~t~rH~pEFtmlE~e~af~d-~~d~m~~~E~li~~~~~~v~~~~~~~~~~~~~~~~----~~~~pf~rity~eA 305 (456)
T 3m4p_A 231 YRAEQSRTVRHLAEYLHLEAELPFIS-FEDLLNHLEDLVCTVIDNVMAVHGDKIRKMNPHLK----LPTRPFKRMTYADA 305 (456)
T ss_dssp ECCCSCCCSSCCSEEEEEEEEEESCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCC----CCCSSCEEEEHHHH
T ss_pred eecCCCCCCcchHHHHHhHHHHhcCC-HHHHHHHHHHHHHHHHHHHhhhhhhhHhhcCcccc----cCCCCCeEeeHHHH
Confidence 99999999999999999999999996 99999999999999999999888776655443221 12458999999999
Q ss_pred HHHHHHcCCC-----CCCCCCCCcHHHHHHHHHhh
Q 013865 404 VQMLKDAGVE-----IDPLGDLNTESERKLGQLVL 433 (435)
Q Consensus 404 i~lL~~~g~~-----~~~~~dl~te~E~~L~~~vk 433 (435)
+++|++.|++ ..|++||++++|++|++.++
T Consensus 306 i~~l~~~g~~~~~~~~~~g~~l~~~~e~~l~~~~~ 340 (456)
T 3m4p_A 306 IKYCNDHGILNKDKPFEYGEDISEKPERQMTDEIG 340 (456)
T ss_dssp HHHHHHHTCCSSSSCCCTTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHcCCCccccCcchHHHHHHHHHHHHHHHhC
Confidence 9999998864 35889999999999998774
No 6
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis}
Probab=100.00 E-value=1.2e-69 Score=571.63 Aligned_cols=310 Identities=24% Similarity=0.302 Sum_probs=256.0
Q ss_pred CCCCcccCChhhhh---ccCCCCCCcccccccCcceE-EeccccCC---CCCCEEEEEEEEeeeecCCCceEEEEEEeCC
Q 013865 60 LANNYGDVPLQELQ---SVNDPQTGKWSEAVNGREWT-VVGALNGS---LKDQEVLIRGRVHTTRPVGNKLAFVVVRERV 132 (435)
Q Consensus 60 ~~~~Yg~~~~~~~~---~~~~~~p~~~~~~~~~~~~~-~i~~l~~~---~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~ 132 (435)
+++.|-..|...++ +.+.||||+|.++++..+.. ...++... ..|++|+|+|||+++|.+| |++|++|||++
T Consensus 35 ~~~~~~~~r~~k~~~l~~~g~~yp~~~~~t~~~~~~~~~~~~~~~~~~~~~g~~V~v~GwV~~~R~~G-k~~Fi~LrD~s 113 (529)
T 4ex5_A 35 DENQIVAERRDKLRALRDQGIAYPNDFQPTHHAADLQTAYADADKEALEAKSLEVAIAGRMMLKRVMG-KASFATVQDGS 113 (529)
T ss_dssp -CHHHHHHHHHHHHHHHHTSCSSCCCCCCCCCHHHHHHHTTTCCHHHHHHHCCEEEEEEEEEEEEEET-TEEEEEEECSS
T ss_pred ChHHHHHHHHHHHHHHHHcCCCCCCCCcCceEHHHHHHHhhccCccccccCCcEEEEEEEEEeeecCC-CeEEEEEEeCC
Confidence 44455555554433 23569999999987764432 22222211 2389999999999999999 89999999999
Q ss_pred eEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCcccCCCceeEEEEEeEEEEeecC-CCCCcccccccchHH
Q 013865 133 STVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRA-AKTPITIEDASRSEA 211 (435)
Q Consensus 133 ~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~~~~~~t~~lEi~v~~i~vls~~-~~lP~~~~d~~~~~~ 211 (435)
+.||||++.+ .++++++++++.|+.||+|.|+|+|.+++ +|++||++++|.|||+| .+||+...+
T Consensus 114 g~iQvv~~~~--~~~~~~~~~~~~l~~gd~V~V~G~v~~t~------~gelel~~~~i~vLs~a~~plP~k~~~------ 179 (529)
T 4ex5_A 114 GQIQFFVTPA--DVGAETYDAFKKWDLGDIVAARGVLFRTN------KGELSVKCTQLRLLAKALRPLPDKFHG------ 179 (529)
T ss_dssp CEEEEEECHH--HHCHHHHHHHHTCCTTCEEEEEEEEEECT------TSCEEEEEEEEEEEECCSSCCCC----------
T ss_pred eeEEEEEECC--cCCHHHHHHHhcCCCCCEEEEEEEEEEcC------CCcEEEEEEEEEEEecCCCCCCccccC------
Confidence 9999999864 24567788888999999999999998743 47899999999999999 899986432
Q ss_pred HHHhhhhcCCCCCCCCccccccccccccc-cHHHHHHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCCCCCc--ceeE
Q 013865 212 EIEKASKEGVQLPRVNQDTRLNNRVIDIR-TLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGS--AVFR 288 (435)
Q Consensus 212 ~~~~~~~~~~~~~~~~~etrl~~R~Ldlr-~~~~~~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~egga--~~F~ 288 (435)
..++++||++|||||| ++.++++|++||.|+++||+||+++||+||+||+|+++ +||| .+|.
T Consensus 180 -------------l~d~e~r~r~RyLdLr~~~~~~~~fr~Rs~i~~~iR~ff~~~gFlEVeTPiL~~~--~gGA~a~pF~ 244 (529)
T 4ex5_A 180 -------------LADQETRYRQRYVDLIVTPETRTTFRARTKAIASIRKFMGDADFMEVETPMLHPI--PGGAAAKPFV 244 (529)
T ss_dssp ---------------CTTHHHHTHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESS--CCSSSSCCCE
T ss_pred -------------CcChhhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCCeeecc--CCCCcccccc
Confidence 3678999999999998 69999999999999999999999999999999999854 4444 6897
Q ss_pred e--ccCCCceeeccChHHHHhhhccCCCceeEEEecceecCCCCCCccccccccceeeeeccccHHHHHHHHHHHHHHHH
Q 013865 289 L--DYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIF 366 (435)
Q Consensus 289 v--~~~~~~~~L~~Spql~lq~~i~~g~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~ 366 (435)
+ ++|+.++||+||||||||+|+++|++|||+||||||||+++ .|||||||||||||+|++ |+|+|+++|+||++++
T Consensus 245 t~~n~~~~~~yL~~SpqLylk~L~v~G~~rVyeIg~~FR~E~~~-~rH~pEFtmlE~e~af~d-~~dlm~l~E~li~~v~ 322 (529)
T 4ex5_A 245 THHNALDMEMFLRIAPELYLKRLIVGGFERVFEINRNFRNEGVS-PRHNPEFTMMEFYAAYTD-YRWLMDFTERLIRQAA 322 (529)
T ss_dssp EEETTTTEEEEECSCSHHHHHHHHHTTCSEEEEEEEEECCSCCB-TTBCSEEEEEEEEEETCC-HHHHHHHHHHHHHHHH
T ss_pred cccccCCcceecccCHHHHHHHHHhcCCCcEEEeehheecCCCC-CCcccHhHhhhhhhhcCC-HHHHHHHHHHHHHHHH
Confidence 6 68999999999999999999999999999999999999984 799999999999999996 9999999999999999
Q ss_pred hhhhhhhHHHHHHhhhcCCCcccCCCCCCceeeHHHHHHHHH
Q 013865 367 DGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLK 408 (435)
Q Consensus 367 ~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~rit~~eai~lL~ 408 (435)
+.+.+.+.. .+....+++..||+||||.||++++.
T Consensus 323 ~~v~~~~~~-------~~~~~~id~~~pf~Rity~eAi~~~~ 357 (529)
T 4ex5_A 323 VDALGTATI-------QYQGRELDLAQPFHRLTITQAIQKYA 357 (529)
T ss_dssp HHHHSCSEE-------EETTEEEETTSCCEEEEHHHHHHHHC
T ss_pred HHHhCcCce-------ecCceeeccCCCceEEEHHHHHHHHh
Confidence 999876421 12233466778999999999998653
No 7
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=100.00 E-value=9e-69 Score=555.41 Aligned_cols=309 Identities=32% Similarity=0.536 Sum_probs=279.2
Q ss_pred EEeccccCCCCCCEEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecC
Q 013865 93 TVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVP 172 (435)
Q Consensus 93 ~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~ 172 (435)
+.|+++...+.|++|+|+|||+++|.+| |++|++|||+++.||||++.+. +++++++.|+.||+|.|+|+|..+
T Consensus 5 ~~~~~l~~~~~~~~V~v~Gwv~~~R~~g-~~~F~~lrD~~g~iQ~v~~~~~-----~~~~~~~~l~~~~~v~v~G~v~~~ 78 (429)
T 1wyd_A 5 HFIADVTPEYDGKEVIWAGWVHLLRDLG-GKKFIILRDKTGLGQVVVDKNS-----SAFGISQELTQESVIQVRGIVKAD 78 (429)
T ss_dssp SCTTTCCGGGTTCEEEEEEEEEEEEEET-TEEEEEEEETTEEEEEEECTTS-----TTHHHHTTCCTTCEEEEEEEEEEC
T ss_pred EEHHHhhHHhCCCEEEEEEEEEEEecCC-CeEEEEEEECCeeEEEEEeCCh-----HHHHHHHhCCCCCEEEEEEEEEec
Confidence 3467776678899999999999999999 7999999999999999997542 456777899999999999999876
Q ss_pred CcccCCCceeEEEEEeEEEEeecC-CCCCcccccccchHHHHHhhhhcCCCCCCCCccccccccccccccHHHHHHHHHH
Q 013865 173 DVEIKGATQQVEVQIKKLYCVSRA-AKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQ 251 (435)
Q Consensus 173 ~~~~~~~t~~lEi~v~~i~vls~~-~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~etrl~~R~Ldlr~~~~~~i~~~r 251 (435)
+. .+|++||++++|.|||+| .+||++.++. ...+.|+|+++||||||++.++++|++|
T Consensus 79 ~~----~~~~~el~~~~~~vl~~~~~~~P~~~~~~-----------------~~~~~e~r~~~R~Ldlr~~~~~~~~~~r 137 (429)
T 1wyd_A 79 KR----APRGIELHAEEITLLSKAKAPLPLDVSGK-----------------VKADIDTRLRERVLDLRRQEMQAVIKIQ 137 (429)
T ss_dssp SS----SGGGEEEEEEEEEEEECCCSSCSSCSSSC-----------------CCCCHHHHHHTHHHHHTSHHHHHHHHHH
T ss_pred CC----CCccEEEEEeEEEEeccCCCCCCCCcccc-----------------ccCChhHhhhccceeccCHHHHHHHHHH
Confidence 52 357899999999999999 9999876531 1267899999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCeEEeeCceeeccCCCCCcceeEeccCCCceeeccChHHHHhhhccCCCceeEEEecceecCCCCC
Q 013865 252 SQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYT 331 (435)
Q Consensus 252 s~i~~~~r~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~~~~~~~L~~Spql~lq~~i~~g~~rVfeIgp~FR~E~s~t 331 (435)
|.|++++|+||.++||+||+||+|+.+++||++++|.++|+|+++||+||||||+|+ +++|++|||+||||||+|++++
T Consensus 138 s~i~~~ir~ff~~~gF~eV~TP~l~~~~~e~~~~~f~~~~~~~~~~L~~Spql~~~~-~~~g~~rvf~ig~~FR~E~~~~ 216 (429)
T 1wyd_A 138 SLALKAFRETLYKEGFIEIFTPKIIASATEGGAQLFPVIYFGKEAFLAQSPQLYKEL-MAGVVERVFEVAPAWRAEESDT 216 (429)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEESSCSSTTCCCCEEEETTEEEEECSCCHHHHHH-HHHHHSEEEEEEEEECCCCCCS
T ss_pred HHHHHHHHHHHhhCCCEEEECCEEEeeCCCCCceeEEEecCCceEEecCCcHHHHHH-HHhCcCceEEEcccccccCCcc
Confidence 999999999999999999999999999999999999999999999999999999998 6778999999999999999989
Q ss_pred CccccccccceeeeeccccHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhcCCCcccCCCCCCceeeHHHHHHHHHHcC
Q 013865 332 HRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKDAG 411 (435)
Q Consensus 332 ~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~rit~~eai~lL~~~g 411 (435)
.||+|||||||+||+|.+ ++|+|+++|+|++++++.+.++|..+++.++..++. +..||+||||.||++++.+.|
T Consensus 217 ~RH~pEFtqle~e~~~~~-~~dlm~~~e~ll~~l~~~~~~~~~~~l~~~~~~~~~----l~~pf~rity~eA~~~~~~~g 291 (429)
T 1wyd_A 217 PFHLAEFISMDVEMAFAD-YNDVMQLLEKILHNIVKTIKEEGKEELKILNYEPPE----VKIPIKRLKYTEAIEILRSKG 291 (429)
T ss_dssp SSCCSEEEEEEEEEETCC-HHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCCCCC----CCSSCEEEEHHHHHHHHHHSS
T ss_pred ccccceeeEeeeeecCCC-HHHHHHHHHHHHHHHHHHHhccchhhhhhccccccc----CCCCccEEEHHHHHHHHHhcC
Confidence 999999999999999996 999999999999999999999888888877654432 246999999999999999999
Q ss_pred CCCCCCCCCCcHHHHHHHHHhhc
Q 013865 412 VEIDPLGDLNTESERKLGQLVLE 434 (435)
Q Consensus 412 ~~~~~~~dl~te~E~~L~~~vke 434 (435)
+++.|++||++++|+.|++.+.+
T Consensus 292 ~~~~~~~~l~~~~e~~l~~~~~~ 314 (429)
T 1wyd_A 292 YNIKFGDDIGTPELRILNEELKE 314 (429)
T ss_dssp CCCCTTSCCCHHHHHHHHHHHCC
T ss_pred CCcccCcccCcHHHHHHHHHhcc
Confidence 98899999999999999998753
No 8
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A*
Probab=100.00 E-value=1.8e-68 Score=554.53 Aligned_cols=307 Identities=24% Similarity=0.390 Sum_probs=256.9
Q ss_pred EeccccCCCCCCEEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCC
Q 013865 94 VVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPD 173 (435)
Q Consensus 94 ~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~ 173 (435)
+|+++. .+.|++|+|+|||+++|.+|++++|++|||+++.||||++.+ .++ .++. ..|+.||+|.|+|+|..++
T Consensus 2 ~i~~~~-~~~~~~V~v~Gwv~~~R~~Gk~~~Fi~LrD~~g~iQvv~~~~---~~~-~~~~-~~l~~~~~v~v~G~v~~~~ 75 (435)
T 2xgt_A 2 KIRDLV-KHRNERVCIKGWIHRMRRQGKSLMFFILRDGTGFLQVLLMDK---LCQ-TYDA-LTVNTECTVEIYGAIKEVP 75 (435)
T ss_dssp CGGGGG-GGTTSEEEEEEEEEEEEECTTSEEEEEEECSSCEEEEEEEGG---GGS-SHHH-HHCCTTCEEEEEEEEEECC
T ss_pred chhhhh-hcCCCEEEEEEEEEEecccCCCcEEEEEEECCceEEEEECCc---chh-HHHH-hcCCCCCEEEEEEEEEecC
Confidence 355664 478999999999999999987899999999999999999843 121 1222 3699999999999998754
Q ss_pred cccCCCceeEEEEEeEEEEeecC-C--CCCcccccccchHHHHHhhhhcCCCCCCCCccccccccccccccHHHHHHHHH
Q 013865 174 VEIKGATQQVEVQIKKLYCVSRA-A--KTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRI 250 (435)
Q Consensus 174 ~~~~~~t~~lEi~v~~i~vls~~-~--~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~etrl~~R~Ldlr~~~~~~i~~~ 250 (435)
.. ++.+|++||+++++.+|+++ + ..|+..+ .++.|+|+++||||||++.++++|++
T Consensus 76 ~~-~~~~g~~El~~~~~~vl~~~~p~~~~pl~~~--------------------~~~~e~r~~~R~Ldlr~~~~~~~~r~ 134 (435)
T 2xgt_A 76 EG-KEAPNGHELIADFWKIIGNAPPGGIDNVLNE--------------------EASVDKMLDNRHLVIRGENAAALLRL 134 (435)
T ss_dssp -------TTEEEEEEEEEEEECCCTTHHHHHCC----------------------CCHHHHHHTHHHHTTSHHHHHHHHH
T ss_pred CC-cCCCCcEEEEEEEEEEeecCCCccccccccc--------------------CCCHHHHhhCeeeeecCHHHHHHHHH
Confidence 21 24468899999999999986 2 1232211 26889999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCeEEeeCceeeccCCCCCcceeEeccCCCceeeccChHHHHhhhccCCCceeEEEecceecCCCC
Q 013865 251 QSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSY 330 (435)
Q Consensus 251 rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~~~~~~~L~~Spql~lq~~i~~g~~rVfeIgp~FR~E~s~ 330 (435)
||.|++++|+||.++||+||+||+|++++++||+++|.++|||+++||+||||||||++++ |++||||||||||||+++
T Consensus 135 Rs~i~~~iR~ff~~~gFlEVeTPiL~~s~~eG~~~~F~~~~~g~~~~L~~SpqLylq~l~~-g~~rvfeIg~~FR~E~~~ 213 (435)
T 2xgt_A 135 RAAATRAMREHFYNAGYVEVAPPTLVQTQVEGGSTLFNLDYFGEQSFLTQSSQLYLETCIP-TLGDVFCIAQSYRAEKSR 213 (435)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEESCCSSCTTSCCEEEETTEEEEECSCSHHHHHHHHH-HHCSEEEEEEEECCCSSC
T ss_pred HHHHHHHHHHHHHHCCCEEEECCeEeeccCCCchhceeeccCCcccccCCChHHHHHHhhh-ccCceEEEecceecCCCC
Confidence 9999999999999999999999999998899999999999999999999999999999885 799999999999999999
Q ss_pred CCccccccccceeeeeccccHHHHHHHHHHHHHHHHhhhhhhhHH--HHHHhhhcCCCcccCCCCCCceeeHHHHHHHHH
Q 013865 331 THRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKK--ELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLK 408 (435)
Q Consensus 331 t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~--~l~~~~~~~~~~~~~~~~p~~rit~~eai~lL~ 408 (435)
++||+||||||||||+|++ |+|+|+++|+||+++++.+.+.+.. .++.+...+. ....||+||||.||+++|+
T Consensus 214 t~RH~~EFT~lE~e~af~d-~~d~m~~~E~li~~~~~~v~~~~~~~~~~~~~~~~~~----~~~~pf~rity~ea~~~~~ 288 (435)
T 2xgt_A 214 TRRHLAEYAHVEAECPFIT-LDDLMEKIEELVCDTVDRLLADEEAKKLLEHINPKFQ----PPERPFLRMEYKDAIKWLQ 288 (435)
T ss_dssp CTTCCSEEEEEEEEEESCC-HHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHSTTCC----CCCSSCEEEEHHHHHHHHH
T ss_pred ccccccceeEEEEEEecCC-HHHHHHHHHHHHHHHHHHHhccccchhhhhhcccccc----ccCCCceEEEHHHHHHHHH
Confidence 9999999999999999996 9999999999999999999876543 2333322111 1135899999999999999
Q ss_pred HcCCC------CCCCCCCCcHHHHHHHHHhh
Q 013865 409 DAGVE------IDPLGDLNTESERKLGQLVL 433 (435)
Q Consensus 409 ~~g~~------~~~~~dl~te~E~~L~~~vk 433 (435)
..|+. +.|++|+++++|++|++.+.
T Consensus 289 ~~~~~~~~~~~~~~g~~l~~~~e~~l~~~~~ 319 (435)
T 2xgt_A 289 EHNVENEFGNTFTYGEDIAEAAERFMTDTIN 319 (435)
T ss_dssp HTTCBCTTSCBCCTTSCCCHHHHHHHHHHHT
T ss_pred hcCCCcccccccchhhHHHHHHHHHHHHhcC
Confidence 88764 45778999999999988764
No 9
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Probab=100.00 E-value=1.8e-68 Score=562.06 Aligned_cols=296 Identities=20% Similarity=0.317 Sum_probs=246.0
Q ss_pred CCCCCCcccccccCcceE-EeccccC-C--CCCCEEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHH
Q 013865 76 NDPQTGKWSEAVNGREWT-VVGALNG-S--LKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMV 151 (435)
Q Consensus 76 ~~~~p~~~~~~~~~~~~~-~i~~l~~-~--~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~ 151 (435)
.+||||+|.++++..+.. ...++.. . ..|++|+|+|||+++|.+| |++|++|||+++.||||++.+. ++++++
T Consensus 32 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~Gwv~~~R~~g-k~~F~~LrD~sg~iQvv~~~~~--~~~~~~ 108 (504)
T 1e1o_A 32 GVAFPNDFRRDHTSDQLHEEFDAKDNQELESLNIEVSVAGRMMTRRIMG-KASFVTLQDVGGRIQLYVARDS--LPEGVY 108 (504)
T ss_dssp SCSSCCCCCCSCCHHHHHHHHTTCCHHHHHHHCCEEEEEEEEEEEEEET-TEEEEEEEETTEEEEEEEETTT--SSTTHH
T ss_pred CCCCCCCCcCceEHHHHHHHhhccCccccccCCCEEEEEEEEEEEecCC-CcEEEEEEECCeeEEEEEECCc--CCHHHH
Confidence 479999999886654321 1222211 1 1288999999999999999 8999999999999999998542 345566
Q ss_pred H-HHhcCCCCcEEEEEEEEecCCcccCCCceeEEEEEeEEEEeecC-CCCCcccccccchHHHHHhhhhcCCCCCCCCcc
Q 013865 152 R-FVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRA-AKTPITIEDASRSEAEIEKASKEGVQLPRVNQD 229 (435)
Q Consensus 152 k-~~~~l~~esiV~V~G~v~~~~~~~~~~t~~lEi~v~~i~vls~~-~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~e 229 (435)
+ .++.|+.||+|.|+|+|..++ +|++||++++|.||++| .+||.... +.++.+
T Consensus 109 ~~~~~~l~~g~~V~V~G~v~~~~------~ge~ei~~~~i~vl~~a~~plP~k~~-------------------~~~~~e 163 (504)
T 1e1o_A 109 NDQFKKWDLGDIIGARGTLFKTQ------TGELSIHCTELRLLTKALRPLPDKFH-------------------GLQDQE 163 (504)
T ss_dssp HHTGGGCCTTCEEEEEEEEEECT------TCCEEEEEEEEEEEECCSSCCCC--------------------------TT
T ss_pred HHHHhcCCCCCEEEEEEEEEecC------CceEEEEEEEEEEecccCCCCCcccc-------------------CCcChh
Confidence 6 678899999999999998753 47899999999999999 89995421 236789
Q ss_pred ccccccccccc-cHHHHHHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCCCCCcceeEe--ccCCCceeeccChHHHH
Q 013865 230 TRLNNRVIDIR-TLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRL--DYKGQSACLAQSPQLHK 306 (435)
Q Consensus 230 trl~~R~Ldlr-~~~~~~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~egga~~F~v--~~~~~~~~L~~Spql~l 306 (435)
+|+++|||||| ++.++++|++||.|+++||+||.++||+||+||+|+++.+++++.+|.| ++||.++||+|||||||
T Consensus 164 ~r~r~RyLdL~~~~~~~~~~r~Rs~i~~~iR~f~~~~gFlEVeTPiL~~~~~Ga~ar~F~t~~~~~~~~~yL~~SpqLyl 243 (504)
T 1e1o_A 164 VRYRQRYLDLIANDKSRQTFVVRSKILAAIRQFMVARGFMEVETPMMQVIPGGASARPFITHHNALDLDMYLRIAPELYL 243 (504)
T ss_dssp HHHHTHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTTTCEECCCCSEESSCCSSCCCCCEEEETTTTEEEEECSCSHHHH
T ss_pred hhhhccchhhhcCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCeEEecCCCCcccceEeccCCCCceEEeccCHHHHH
Confidence 99999999996 7999999999999999999999999999999999996543334679998 78999999999999999
Q ss_pred hhhccCCCceeEEEecceecCCCCCCccccccccceeeeeccccHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhcCCC
Q 013865 307 QMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPF 386 (435)
Q Consensus 307 q~~i~~g~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~ 386 (435)
|+|+++|++||||||||||||+++ .||||||||||+||+|++ |+|+|+++|+||+++++.+.++|. +. +..
T Consensus 244 k~L~v~G~~rVyeIg~~FR~E~~~-~rH~pEFt~lE~e~af~d-~~dlm~l~E~li~~~~~~v~~~~~--i~-----~~~ 314 (504)
T 1e1o_A 244 KRLVVGGFERVFEINRNFRNEGIS-VRHNPEFTMMELYMAYAD-YHDLIELTESLFRTLAQEVLGTTK--VT-----YGE 314 (504)
T ss_dssp HHHHHHTCCEEEEEEEEECCCCCC-C-CCSEEEEEEEEEESCC-HHHHHHHHHHHHHHHHHHHHSSSE--EE-----ETT
T ss_pred HHHhhcCCCcEEEEcccccCCCCC-ccccCceeeeeeeecCCC-HHHHHHHHHHHHHHHHHHHhCCce--ee-----eCC
Confidence 999999999999999999999985 499999999999999996 999999999999999999987763 22 222
Q ss_pred cccCCCCCCceeeHHHHHHHHH
Q 013865 387 EPLKYKPKTLRLTFEEGVQMLK 408 (435)
Q Consensus 387 ~~~~~~~p~~rit~~eai~lL~ 408 (435)
..+++..||+||||.||++.+.
T Consensus 315 ~~i~~~~pf~rity~eAi~~~~ 336 (504)
T 1e1o_A 315 HVFDFGKPFEKLTMREAIKKYR 336 (504)
T ss_dssp EEEETTSCCEEEEHHHHHHHHS
T ss_pred EeeccCCCceEEeHHHHHHHHc
Confidence 2355677999999999998664
No 10
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A
Probab=100.00 E-value=5.1e-68 Score=550.72 Aligned_cols=310 Identities=28% Similarity=0.419 Sum_probs=278.1
Q ss_pred EEeccccCCCCCCEEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecC
Q 013865 93 TVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVP 172 (435)
Q Consensus 93 ~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~ 172 (435)
+.|+++...+.|++|+|+|||+++|.+| |++|++|||+++.||||++.+ .++++++++++.|+.||+|.|+|+|..+
T Consensus 5 ~~~~~l~~~~~~~~V~v~G~v~~~R~~g-~~~F~~lrD~~g~iQ~v~~~~--~~~~~~~~~~~~l~~~~~v~v~G~v~~~ 81 (434)
T 1x54_A 5 VYCQEVKPELDGKKVRLAGWVYTNMRVG-KKIFLWIRDSTGIVQAVVAKN--VVGEETFEKAKKLGRESSVIVEGIVKAD 81 (434)
T ss_dssp CCGGGCCGGGTTCEEEEEEEEEEEEEET-TEEEEEEEETTEEEEEEECHH--HHCHHHHHHHHTCCTTCEEEEEEEEEEC
T ss_pred EEHHHhhHHhCCCEEEEEEEEEEEecCC-CeEEEEEEECCEEEEEEEECC--cCCHHHHHHHhcCCCCCEEEEEEEEEec
Confidence 4567777678899999999999999999 899999999999999999753 2456778888999999999999999876
Q ss_pred CcccCCCceeEEEEEeEEEEeecCCCCCc--ccccccchHHHHHhhhhcCCCCCCCCccccccccccccccHHHHHHHHH
Q 013865 173 DVEIKGATQQVEVQIKKLYCVSRAAKTPI--TIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRI 250 (435)
Q Consensus 173 ~~~~~~~t~~lEi~v~~i~vls~~~~lP~--~~~d~~~~~~~~~~~~~~~~~~~~~~~etrl~~R~Ldlr~~~~~~i~~~ 250 (435)
+. .+|++||++++|.|||+|.+||+ +.+. ++.|+|+++||||||++.++++|++
T Consensus 82 ~~----~~~~~el~~~~~~vl~~~~~~P~~~~~~~--------------------~~~e~r~~~R~Ldlr~~~~~~~~~~ 137 (434)
T 1x54_A 82 ER----APGGAEVHVEKLEVIQAVSEFPIPENPEQ--------------------ASPELLLDYRHLHIRTPKASAIMKV 137 (434)
T ss_dssp TT----SGGGEEEEEEEEEEEECCSCCSSCSSGGG--------------------SCHHHHHHTHHHHTTSHHHHHHHHH
T ss_pred CC----CCccEEEEEeEEEEeecCCCCCCcccccC--------------------CCHHHhhhceeeeecCHHHHHHHHH
Confidence 42 35789999999999999988998 5432 5789999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCeEEeeCceeeccCCCCCcceeEeccCCCceeeccChHHHHhhhccCCCceeEEEecceecCCCC
Q 013865 251 QSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSY 330 (435)
Q Consensus 251 rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~~~~~~~L~~Spql~lq~~i~~g~~rVfeIgp~FR~E~s~ 330 (435)
||.|++++|+||.++||+||+||+|+.+.+||++++|.++|+|+++||+||||||+|+ +++|++|||+||||||+|+++
T Consensus 138 rs~i~~~ir~~f~~~gF~eVeTP~l~~~~~e~~~~~f~~~~~~~~~~Lr~Spel~~~~-~~~g~~rvf~ig~~FR~E~~~ 216 (434)
T 1x54_A 138 KETLIMAAREWLLKDGWHEVFPPILVTGAVEGGATLFKLKYFDKYAYLSQSAQLYLEA-AIFGLEKVWSLTPSFRAEKSR 216 (434)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEESCCSSCGGGCCEEEETTEEEEECSCSHHHHHH-HHHHHSEEEEEEEEECCCCCC
T ss_pred HHHHHHHHHHHHHHCCCEEEeCcEEEeecCCCCceeEEEeecCCcEEeccChHHHHHH-HhcCccceEEEecceecCCCC
Confidence 9999999999999999999999999998899999999999999999999999999998 677899999999999999998
Q ss_pred CCccccccccceeeeeccccHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhcCCCcccCCCCCCceeeHHHHHHHHHHc
Q 013865 331 THRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKDA 410 (435)
Q Consensus 331 t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~rit~~eai~lL~~~ 410 (435)
+.||+|||||||+||+|.+ ++|+|+++|+|++++++.+.++|..+|+.++..++.-. .+..||+||||.||++++++.
T Consensus 217 ~~RH~pEFtqle~e~~~~~-~~dlm~~~e~ll~~l~~~v~~~~~~~i~~~~~~~~~~~-~~~~pf~rity~ea~~~~~~~ 294 (434)
T 1x54_A 217 TRRHLTEFWHLELEAAWMD-LWDIMKVEEELVSYMVQRTLELRKKEIEMFRDDLTTLK-NTEPPFPRISYDEAIDILQSK 294 (434)
T ss_dssp CSSCCSEEEEEEEEEETCC-HHHHHHHHHHHHHHHHHHHHHHCHHHHHTTCSCCHHHH-TCCSSCCEEEHHHHHHHHHHT
T ss_pred CcccccEEEEeeEEEcCCC-HHHHHHHHHHHHHHHHHHHhhhchhhhhhcCccccccc-ccCCCCcEEEHHHHHHHHHhc
Confidence 8999999999999999996 99999999999999999999888888877665433100 134699999999999999999
Q ss_pred CCCCCCCCCCCcHHHHHHHHHh
Q 013865 411 GVEIDPLGDLNTESERKLGQLV 432 (435)
Q Consensus 411 g~~~~~~~dl~te~E~~L~~~v 432 (435)
|+++.|++||++++|++|++.+
T Consensus 295 g~~~~~~~dl~~~~e~~l~~~~ 316 (434)
T 1x54_A 295 GVNVEWGDDLGADEERVLTEEF 316 (434)
T ss_dssp TCCCCTTCCCCHHHHHHHHTTC
T ss_pred CCCcccCCccChHHHHHHHHHh
Confidence 9988999999999999998754
No 11
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Probab=100.00 E-value=2.1e-67 Score=544.16 Aligned_cols=300 Identities=34% Similarity=0.488 Sum_probs=220.3
Q ss_pred EEeccccCCCCCCEEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCC-CCcEEEEEEEEec
Q 013865 93 TVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLS-NESIVDVIGVVSV 171 (435)
Q Consensus 93 ~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~-~esiV~V~G~v~~ 171 (435)
+.|++|. .+.|++|+|+|||+++|.+| |++|++|||+++.||||++. +.|+ .||+|.|+|+|..
T Consensus 3 ~~~~~l~-~~~~~~V~v~Gwv~~~R~~g-~~~F~~lrD~~g~iQ~v~~~-------------~~l~~~~~~v~v~G~v~~ 67 (422)
T 1n9w_A 3 VLVRDLK-AHVGQEVELLGFLHWRRDLG-RIQFLLLRDRSGVVQVVTGG-------------LKLPLPESALRVRGLVVE 67 (422)
T ss_dssp CCGGGGG-GCTTSEEEEEEEEEEEEECS-SEEEEEEEETTEEEEEEEES-------------CCCCCTTCEEEEEEEEEE
T ss_pred EEHHHHH-hcCCCEEEEEEEEEEEecCC-CeEEEEEEECCEEEEEEEEc-------------cccCCCCCEEEEEEEEEe
Confidence 4567777 67899999999999999999 89999999999999999973 3699 9999999999987
Q ss_pred CCcccCCCceeEEEEEeEEEEeecC-CCCCcccccccchHHHHHhhhhcCCCCCCCCccccccccccccccHHHHHHHHH
Q 013865 172 PDVEIKGATQQVEVQIKKLYCVSRA-AKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRI 250 (435)
Q Consensus 172 ~~~~~~~~t~~lEi~v~~i~vls~~-~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~etrl~~R~Ldlr~~~~~~i~~~ 250 (435)
++. .+|++||++++|.|||+| .+||++.++. .+..+.|+|+++||||||++.++++|++
T Consensus 68 ~~~----~~~~~el~~~~~~vl~~~~~~~P~~~~~~----------------~~~~~~e~r~~~R~Ldlr~~~~~~~~~~ 127 (422)
T 1n9w_A 68 NAK----APGGLEVQAKEVEVLSPALEPTPVEIPKE----------------EWRANPDTLLEYRYVTLRGEKARAPLKV 127 (422)
T ss_dssp CTT----STTSEEEEEEEEEEEECCCSCCC---------------------------------CHHHHTTSHHHHHHHHH
T ss_pred cCC----CCccEEEEEeEEEEeccCCcCCCCCcccc----------------ccCCCHHHHhhhhHHhhcCHHHHHHHHH
Confidence 652 247899999999999999 9999876531 1236789999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCeEEeeCceeeccCCCCCcceeEeccCCCceeeccChHHHHhhhccCCCceeEEEecceecCCCC
Q 013865 251 QSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSY 330 (435)
Q Consensus 251 rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~~~~~~~L~~Spql~lq~~i~~g~~rVfeIgp~FR~E~s~ 330 (435)
||.|++++|+||.++||+||+||+|+.+++||++++|.++|+|.++||+||||||+|+++ +|++|||+||||||+|+++
T Consensus 128 rs~i~~~ir~~f~~~gF~EV~TPil~~~~~e~~~~~f~~~~~g~~~~L~~Spel~~~~l~-~g~~rvf~ig~~FR~E~~~ 206 (422)
T 1n9w_A 128 QAALVRGFRRYLDRQDFTEIFTPKVVRAGAEGGSGLFGVDYFEKRAYLAQSPQLYKQIMV-GVFERVYEVAPVWRMEEHH 206 (422)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCC----------------------------CHHHHHHHH-HHHSEEEEEEEC-------
T ss_pred HHHHHHHHHHHHHHCCCEEEECCEEEEeCCCCCceeEEEeeCCCcEEeeeCHHHHHHHHh-hCCCceeEEeCceECCCCC
Confidence 999999999999999999999999999889999999999999999999999999999987 7799999999999999998
Q ss_pred CCccccccccceeeeeccccHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhcCCCcccCCCCCCceeeHHHHHHHHHHc
Q 013865 331 THRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKDA 410 (435)
Q Consensus 331 t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~rit~~eai~lL~~~ 410 (435)
+.||+|||||||+||+|.++|+|+|+++|+|++++++.+.++|..+|+.++..++.. ..||+||||.||+++|++.
T Consensus 207 ~~RH~pEFtqle~e~~~~~d~~dlm~l~e~ll~~l~~~~~~~~~~~i~~~~~~~~~~----~~pf~rity~eA~~~~~~~ 282 (422)
T 1n9w_A 207 TSRHLNEYLSLDVEMGFIADEEDLMRLEEALLAEMLEEALNTAGDEIRLLGATWPSF----PQDIPRLTHAEAKRILKEE 282 (422)
T ss_dssp ------CCEEEEEEEESCSSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHTTCCCCCC----SSSCCEEEHHHHHHHHHHT
T ss_pred CCcccceeEEeeeeeeCCCCHHHHHHHHHHHHHHHHHHHhccchhhhhhcCcccccc----CCCcceeEHHHHHHHHHhc
Confidence 899999999999999999459999999999999999999988888888776544321 1589999999999999988
Q ss_pred CCCCCCCCCCCcHHHHHHHHHhh
Q 013865 411 GVEIDPLGDLNTESERKLGQLVL 433 (435)
Q Consensus 411 g~~~~~~~dl~te~E~~L~~~vk 433 (435)
| ++.|++|+++++|++|++.+.
T Consensus 283 ~-~~~~~~dl~~~~e~~l~~~~~ 304 (422)
T 1n9w_A 283 L-GYPVGQDLSEEAERLLGEYAK 304 (422)
T ss_dssp S-CCCCCSSCCHHHHHHHHHHHH
T ss_pred C-CcccccccCcHHHHHHHHHHH
Confidence 8 778899999999999999885
No 12
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Probab=100.00 E-value=2.2e-67 Score=552.95 Aligned_cols=296 Identities=20% Similarity=0.323 Sum_probs=249.0
Q ss_pred CCCCCCcccccccCcceE-EeccccC-C--CCCCEEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHH
Q 013865 76 NDPQTGKWSEAVNGREWT-VVGALNG-S--LKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMV 151 (435)
Q Consensus 76 ~~~~p~~~~~~~~~~~~~-~i~~l~~-~--~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~ 151 (435)
.+||||+|.++++..+.. ...++.. . ..|++|+|+|||+++|.+| |++|++|||+++.||||++.+ .++++++
T Consensus 24 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~Gwv~~~R~~g-k~~F~~LrD~sg~iQvv~~~~--~~~~~~~ 100 (493)
T 3a74_A 24 VDPFGKRFERTHKAEELFELYGDLSKEELEEQQIEVAVAGRIMTKRGMG-KAGFAHIQDVTGQIQIYVRQD--DVGEQQY 100 (493)
T ss_dssp CCTTCCCCCCSCCHHHHHHHHTTSCHHHHHHHCCEEEEEEEEEEEEEET-TEEEEEEEETTEEEEEEEEHH--HHHHHHH
T ss_pred CCCCCCCCcCceehHHHHHhhccccchhhccCCCEEEEEEEEEEEecCC-CcEEEEEEECCEeEEEEEECC--cCCHHHH
Confidence 489999999886654321 1222211 0 1288999999999999999 899999999999999999753 2345667
Q ss_pred HHHhcCCCCcEEEEEEEEecCCcccCCCceeEEEEEeEEEEeecC-CCCCcccccccchHHHHHhhhhcCCCCCCCCccc
Q 013865 152 RFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRA-AKTPITIEDASRSEAEIEKASKEGVQLPRVNQDT 230 (435)
Q Consensus 152 k~~~~l~~esiV~V~G~v~~~~~~~~~~t~~lEi~v~~i~vls~~-~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~et 230 (435)
+.++.|+.||+|.|+|+|..++ +|++||++++|.||++| .+||.... +.+++++
T Consensus 101 ~~~~~l~~g~~v~V~G~v~~~~------~ge~ei~~~~i~vl~~~~~plP~k~~-------------------~~~~~e~ 155 (493)
T 3a74_A 101 ELFKISDLGDIVGVRGTMFKTK------VGELSIKVSSYEFLTKALRPLPEKYH-------------------GLKDIEQ 155 (493)
T ss_dssp HHHHHCCTTCEEEEEEEEEECT------TCCEEEEEEEEEEEECCSSCCCCC------------------------CHHH
T ss_pred HHHhcCCCCCEEEEEEEEEeCC------CCcEEEEEEEEEEcccccCCCCcccc-------------------CCCCHhh
Confidence 7778999999999999998753 47899999999999999 89995421 2367899
Q ss_pred cccccccccc-cHHHHHHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCCCCCcceeEe--ccCCCceeeccChHHHHh
Q 013865 231 RLNNRVIDIR-TLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRL--DYKGQSACLAQSPQLHKQ 307 (435)
Q Consensus 231 rl~~R~Ldlr-~~~~~~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~egga~~F~v--~~~~~~~~L~~Spql~lq 307 (435)
|+++|||||| ++.++++|++||.|+++||+||.++||+||+||+|+++.+++++++|.+ ++||+++||+||||||+|
T Consensus 156 r~r~RyldL~~~~~~~~~~r~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~~Ga~a~~F~~~~~~~~~~~yLr~SpqLylk 235 (493)
T 3a74_A 156 RYRQRYLDLIMNPESKKTFITRSLIIQSMRRYLDSHGYLEVETPMMHAVAGGAAARPFITHHNALDMTLYMRIAIELHLK 235 (493)
T ss_dssp HHHTHHHHHHHCTHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCCSSSSCCCEEEETTTTEEEEECSCSHHHHH
T ss_pred hhhcchhhhhcCHHHHHHHHHHHHHHHHHHHHHHhCCeEEEECCeEEecCCCCcccceEecccCCCceeEEecCHHHHHH
Confidence 9999999996 7999999999999999999999999999999999996644445679988 789999999999999999
Q ss_pred hhccCCCceeEEEecceecCCCCCCccccccccceeeeeccccHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhcCCCc
Q 013865 308 MSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFE 387 (435)
Q Consensus 308 ~~i~~g~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~ 387 (435)
+++++|++|||+||||||||+++ .||||||||||+||+|++ |+|+|+++|+||+++++.+.++|. +. +...
T Consensus 236 ~l~v~G~~rVyeig~~FR~E~~~-~rH~pEFT~lE~e~af~d-~~dlm~l~E~ll~~l~~~v~~~~~--i~-----~~~~ 306 (493)
T 3a74_A 236 RLIVGGLEKVYEIGRVFRNEGIS-TRHNPEFTMLELYEAYAD-FRDIMKLTENLIAHIATEVLGTTK--IQ-----YGEH 306 (493)
T ss_dssp HHHHTTCCEEEEEEEEECCCCCB-TTBCSEEEEEEEEEETCC-HHHHHHHHHHHHHHHHHHHHSCSE--EE-----ETTE
T ss_pred HHhhcccCceEEECccccCCCCC-cccCCceeEEEEEecCCC-HHHHHHHHHHHHHHHHHHHhCCce--Ee-----eCCE
Confidence 99999999999999999999985 499999999999999996 999999999999999999987763 22 1222
Q ss_pred ccCCCCCCceeeHHHHHHHHH
Q 013865 388 PLKYKPKTLRLTFEEGVQMLK 408 (435)
Q Consensus 388 ~~~~~~p~~rit~~eai~lL~ 408 (435)
.+++..||+||||.||++.+.
T Consensus 307 ~i~~~~pf~rity~eai~~~~ 327 (493)
T 3a74_A 307 LVDLTPEWRRLHMVDAIKEYV 327 (493)
T ss_dssp EEECCSSCEEEEHHHHHHHHT
T ss_pred eeccCCCcceeeHHHHHHHHh
Confidence 355667999999999998654
No 13
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Probab=100.00 E-value=8.5e-64 Score=534.37 Aligned_cols=278 Identities=28% Similarity=0.423 Sum_probs=237.5
Q ss_pred EEeccccCCCCCCEEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecC
Q 013865 93 TVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVP 172 (435)
Q Consensus 93 ~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~ 172 (435)
+.+++|...+.|++|+|+|||+++|.+| +++|++|||+++.||||++.+. + ++++++.|+.||+|.|+|+|..+
T Consensus 5 ~~~~~l~~~~~g~~V~l~GwV~~~R~~G-~~~Fi~LrD~~g~iQvv~~~~~----~-~~~~~~~l~~e~~V~V~G~v~~~ 78 (580)
T 1l0w_A 5 HYAGSLRETHVGEEVVLEGWVNRRRDLG-GLIFLDLRDREGLVQLVAHPAS----P-AYATAERVRPEWVVRAKGLVRLR 78 (580)
T ss_dssp SCGGGCCGGGTTCEEEEEEEEEEEEECS-SCEEEEEEETTEEEEEEECTTS----T-THHHHTTCCTTCEEEEEEEEEEC
T ss_pred EEHHHhHHHhCCCEEEEEEEEEEEecCC-CeEEEEEEECCeeEEEEEeCCh----h-HHHHHhcCCCCcEEEEEEEEEcC
Confidence 4567787778899999999999999999 8999999999999999997532 2 56778899999999999999876
Q ss_pred CcccCC-CceeEEEEEeEEEEeecCCCCCcccccccchHHHHHhhhhcCCCCCCCCccccccccccccccHHHHHHHHHH
Q 013865 173 DVEIKG-ATQQVEVQIKKLYCVSRAAKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQ 251 (435)
Q Consensus 173 ~~~~~~-~t~~lEi~v~~i~vls~~~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~etrl~~R~Ldlr~~~~~~i~~~r 251 (435)
+..... .+|++||++++|.|||+|.++|+.+.+..++ .....++.++||+|||||||++.++++|++|
T Consensus 79 ~~~~~~~~~ge~Ei~~~~i~vl~~a~~lP~~i~~~~~~-----------~~~~~~~~e~Rl~~RyLdLR~~~~~~~l~~R 147 (580)
T 1l0w_A 79 PEPNPRLATGRVEVELSALEVLAEAKTPPFPVDAGWRG-----------EEEKEASEELRLKYRYLDLRRRRMQENLRLR 147 (580)
T ss_dssp SSCCTTSTTTTEEEEEEEEEEEECCCCCSSCCSSGGGT-----------CCCCCCCHHHHHHTHHHHTTSHHHHHHHHHH
T ss_pred CCcCccCCCccEEEEEeEEEEeccCcCCCCCcchhccc-----------cccccCCHHHhhhhhHHHhcCHHHHHHHHHH
Confidence 422222 4688999999999999996677776553221 0123478999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCeEEeeCceeeccCCCCCcceeEecc--CCCce-eeccChHHHHhhhccCCCceeEEEecceecCC
Q 013865 252 SQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDY--KGQSA-CLAQSPQLHKQMSICGDFGRVFETGPVFRAED 328 (435)
Q Consensus 252 s~i~~~~r~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~--~~~~~-~L~~Spql~lq~~i~~g~~rVfeIgp~FR~E~ 328 (435)
|.|+++||+||.++||+||+||+|+++++|| |.+|.|.+ ++..+ ||+||||||||+||++|++||||||||||||+
T Consensus 148 s~i~~~iR~fl~~~gF~EVeTPiL~~s~~eG-Ar~F~v~~~~~~~~~y~L~qSPQl~kq~Lmv~G~~rvfqI~~~FR~E~ 226 (580)
T 1l0w_A 148 HRVIKAIWDFLDREGFVQVETPFLTKSTPEG-ARDFLVPYRHEPGLFYALPQSPQLFKQMLMVAGLDRYFQIARCFRDED 226 (580)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSSBCCCSSS-SCCCEEECTTSTTEEEECCSCSHHHHHHHHHTTCSEEEEEEEEECCCC
T ss_pred HHHHHHHHHHHHhCCcEEEeCCEEecCCCCC-CCCccccccccCCceeECccCHHHHHHHHHHhccCCeEEEeceeeCCC
Confidence 9999999999999999999999999877775 67798854 44444 59999999999999999999999999999999
Q ss_pred CCCCccccccccceeeeeccccHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhcCCCcccCCCCCCceeeHHHHHHHH
Q 013865 329 SYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQML 407 (435)
Q Consensus 329 s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~rit~~eai~lL 407 (435)
+++.|| ||||||||||+|.+ |+|+|+++|+||+++++.+.+ .++..||+||||.||++.+
T Consensus 227 ~~~~r~-pEFT~lE~e~af~d-~~dvm~~~E~li~~i~~~v~~-----------------~~~~~pf~rity~eA~~~~ 286 (580)
T 1l0w_A 227 LRADRQ-PDFTQLDLEMSFVE-VEDVLELNERLMAHVFREALG-----------------VELPLPFPRLSYEEAMERY 286 (580)
T ss_dssp CCSSCC-SEEEEEEEEEESCC-HHHHHHHHHHHHHHHHHHHTC-----------------CCCCSSCCEEEHHHHHHHH
T ss_pred CCCCcC-CCccceeeeecCCC-HHHHHHHHHHHHHHHHHHHhC-----------------CccCCCccEEEHHHHHHHh
Confidence 977666 59999999999996 999999999999999998753 1233589999999999865
No 14
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A*
Probab=100.00 E-value=2.6e-62 Score=524.11 Aligned_cols=270 Identities=27% Similarity=0.409 Sum_probs=233.4
Q ss_pred EEeccccCCCCCCEEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecC
Q 013865 93 TVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVP 172 (435)
Q Consensus 93 ~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~ 172 (435)
+.+++|...+.|++|+|+|||+++|.+| +++|++|||+++.||||++.+ ..+++++++.|+.||+|.|+|+|..+
T Consensus 4 ~~~~~l~~~~~g~~V~l~GwV~~~R~~G-~~~Fi~LrD~~g~iQvv~~~~----~~~~~~~~~~l~~e~~V~V~G~v~~~ 78 (585)
T 1c0a_A 4 EYCGQLRLSHVGQQVTLCGWVNRRRDLG-SLIFIDMRDREGIVQVFFDPD----RADALKLASELRNEFCIQVTGTVRAR 78 (585)
T ss_dssp SCGGGCCGGGTTCEEEEEEEEEEEEECS-SCEEEEEEETTEEEEEEECGG----GHHHHHHHTTCCTTCEEEEEEEEEEC
T ss_pred eEHHHHHHHhCCCEEEEEEEEEEEecCC-CcEEEEEEECCeeEEEEEeCC----chHHHHHHhcCCCCCEEEEEeEEEcc
Confidence 3567777778899999999999999999 899999999999999999753 25677888899999999999999875
Q ss_pred Ccc---cCCCceeEEEEEeEEEEeecCCCCCcccccccchHHHHHhhhhcCCCCCCCCccccccccccccccHHHHHHHH
Q 013865 173 DVE---IKGATQQVEVQIKKLYCVSRAAKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFR 249 (435)
Q Consensus 173 ~~~---~~~~t~~lEi~v~~i~vls~~~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~etrl~~R~Ldlr~~~~~~i~~ 249 (435)
+.. .+..+|++||++++|.|||+|.++|+.+.+ .++.++||+|||||||++.++++|+
T Consensus 79 ~~~~~n~~~~~geiEl~~~~i~vl~~a~~lP~~~~~-------------------~~~~e~Rl~~R~LdLR~~~~~~~l~ 139 (585)
T 1c0a_A 79 DEKNINRDMATGEIEVLASSLTIINRADVLPLDSNH-------------------VNTEEARLKYRYLDLRRPEMAQRLK 139 (585)
T ss_dssp CTTTCCTTSTTTTEEEEEEEEEEEECCCSCSSCTTS-------------------CCCHHHHHHTHHHHTTSHHHHHHHH
T ss_pred CcccccccCCCccEEEEEeEEEEEeccCCCCCCccc-------------------cCCHhHhhhchHhhhcCHHHHHHHH
Confidence 432 122468899999999999999667876543 2678999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCeEEeeCceeeccCCCCCcceeEecc--C-CCceeeccChHHHHhhhccCCCceeEEEecceec
Q 013865 250 IQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDY--K-GQSACLAQSPQLHKQMSICGDFGRVFETGPVFRA 326 (435)
Q Consensus 250 ~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~--~-~~~~~L~~Spql~lq~~i~~g~~rVfeIgp~FR~ 326 (435)
+||.|+++||+||+++||+||+||+|+++++|| |.+|.|.+ + +..+||+||||||||+||++|++|||||||||||
T Consensus 140 ~Rs~i~~~iR~fl~~~gFlEVeTPiL~~s~~eG-Ar~F~v~~~~~~~~~y~L~qSPQl~kq~Lmv~G~~rvfqI~~~FR~ 218 (585)
T 1c0a_A 140 TRAKITSLVRRFMDDHGFLDIETPMLTKATPEG-ARDYLVPSRVHKGKFYALPQSPQLFKQLLMMSGFDRYYQIVKCFRD 218 (585)
T ss_dssp HHHHHHHHHHHHHHHTTCEECCCCSSBCCCSSS-SCCCEEECSSSTTCEEECCSCSHHHHHHHHHTTCCEEEEEEEEECC
T ss_pred HHHHHHHHHHHHHHhCCcEEEeCCEEecCCCCC-CccceecccccCCceEeCccCHHHHHHHHHhcCCCceEEEeceeec
Confidence 999999999999999999999999999887775 66798853 4 4445699999999999999999999999999999
Q ss_pred CCCCCCccccccccceeeeeccccHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhcCCCcccCCCCCCceeeHHHHHHH
Q 013865 327 EDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQM 406 (435)
Q Consensus 327 E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~rit~~eai~l 406 (435)
|++++.|| ||||||||||+|++ |+|+|+++|+||+++++.+.+. ++.. |+||||.||++.
T Consensus 219 E~~~t~r~-pEFT~lE~e~af~d-~~dvm~~~E~li~~i~~~v~~~-----------------~~~~-f~r~ty~ea~~~ 278 (585)
T 1c0a_A 219 EDLRADRQ-PEFTQIDVETSFMT-APQVREVMEALVRHLWLEVKGV-----------------DLGD-FPVMTFAEAERR 278 (585)
T ss_dssp CCCBTTBC-SEEEEEEEEEESCC-HHHHHHHHHHHHHHHHHHHHSC-----------------CCCS-CCEEEHHHHHHH
T ss_pred CCCCCCcC-cccceeeeeecCCC-HHHHHHHHHHHHHHHHHHHhCC-----------------Cccc-cceeeHHHHHHH
Confidence 99977666 59999999999996 9999999999999999987532 1122 899999999974
Q ss_pred H
Q 013865 407 L 407 (435)
Q Consensus 407 L 407 (435)
+
T Consensus 279 ~ 279 (585)
T 1c0a_A 279 Y 279 (585)
T ss_dssp H
T ss_pred h
Confidence 4
No 15
>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens}
Probab=100.00 E-value=2.4e-60 Score=507.77 Aligned_cols=274 Identities=26% Similarity=0.375 Sum_probs=238.0
Q ss_pred EEeccccCCCCCCEEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecC
Q 013865 93 TVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVP 172 (435)
Q Consensus 93 ~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~ 172 (435)
+.+++|...+.|++|+|+|||+++|.+ +|++|||+++.||||++.+ ..+++++++++.|+.||+|.|+|+|...
T Consensus 13 ~~~~~l~~~~~g~~V~l~GwV~~~R~~----~Fi~LrD~~g~iQvv~~~~--~~~~~~~~~~~~l~~e~~V~V~G~v~~~ 86 (617)
T 4ah6_A 13 NTCGELRSSHLGQEVTLCGWIQYRRQN----TFLVLRDFDGLVQVIIPQD--ESAASVKKILCEAPVESVVQVSGTVISR 86 (617)
T ss_dssp SCGGGCCGGGTTCEEEEEEEECCCCTT----TEEEEECSSCEEEEECCCS--SSSHHHHHHHHHCCSSCEEEEEEEEEEC
T ss_pred eEHHHhHHHhCCCEEEEEEEeeeecCe----EEEEEEeCCcCEEEEEeCC--cCcHHHHHHHhcCCCCCEEEEEEEEEeC
Confidence 567888888899999999999999963 4999999999999999854 2356788899999999999999999864
Q ss_pred Cc---ccCCCceeEEEEEeEEEEeecCCCCCcccccccchHHHHHhhhhcCCCCCCCCccccccccccccccHHHHHHHH
Q 013865 173 DV---EIKGATQQVEVQIKKLYCVSRAAKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFR 249 (435)
Q Consensus 173 ~~---~~~~~t~~lEi~v~~i~vls~~~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~etrl~~R~Ldlr~~~~~~i~~ 249 (435)
+. ..+..+|++||++++|.||++|.+||++++++. .++.++||+|||||||++..+++|+
T Consensus 87 ~~~~~n~~~~tgeiEl~~~~i~vL~~a~~lP~~~~~~~-----------------~~~ee~Rl~~R~LdLR~~~~~~~lr 149 (617)
T 4ah6_A 87 PAGQENPKMPTGEIEIKVKTAELLNACKKLPFEIKNFV-----------------KKTEALRLQYRYLDLRSFQMQYNLR 149 (617)
T ss_dssp STTCCCTTSTTTTEEEEEEEEEEEECBCCCSSCTTTTC-----------------CSCHHHHHHTHHHHTTSHHHHHHHH
T ss_pred CccccCccCCCCcEEEEEeEEEEeecCCCCCccccccc-----------------ccChhhhccceeeeecchHHHHHHH
Confidence 32 123456899999999999999988999876532 2578999999999999999999999
Q ss_pred HHHHHHHHHHHHhh-cCCeEEeeCceeeccCCCCCcceeEecc--CCCceeeccChHHHHhhhccCCCceeEEEecceec
Q 013865 250 IQSQVGNIFRQFLL-SENFVEIHTPKLIAGSSEGGSAVFRLDY--KGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRA 326 (435)
Q Consensus 250 ~rs~i~~~~r~fl~-~~gF~EV~TP~l~~~~~egga~~F~v~~--~~~~~~L~~Spql~lq~~i~~g~~rVfeIgp~FR~ 326 (435)
+||.|+++||+||. ++||+||+||+|+++. .+||.+|.+.+ +|..+||+||||||||+|+++|++|||+|||||||
T Consensus 150 ~Rs~i~~~iR~f~~~~~gF~EVeTPiL~~st-~~GA~~F~v~~~~~g~~~~L~qSpql~kq~l~v~g~~rvfqi~~~FR~ 228 (617)
T 4ah6_A 150 LRSQMVMKMREYLCNLHGFVDIETPTLFKRT-PGGAKEFLVPSREPGKFYSLPQSPQQFKQLLMVGGLDRYFQVARCYRD 228 (617)
T ss_dssp HHHHHHHHHHHHHHTTSCCEECCCCSSBCCC-CSSSCCCEEECSSTTCEEECCSSTTHHHHHHHHTSCSEEEEEEEEECC
T ss_pred HHHHHHHHHHHHHHhcCCeEEEeCCeeccCC-CCCCcCceeccccCCcccccccCHHHHHHHHHhcccCcEEEEEhheec
Confidence 99999999999996 7999999999999764 45678899876 68999999999999999999999999999999999
Q ss_pred CCCCCCccccccccceeeeeccccHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhcCCCcccCCCCCCceeeHHHHHHH
Q 013865 327 EDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQM 406 (435)
Q Consensus 327 E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~rit~~eai~l 406 (435)
|++++ +|+||||||||||+|.+ ++|+|+++|+||+++++.+. .++..||+||||.||+.
T Consensus 229 E~~~t-~r~pEFt~lE~e~af~d-~~d~m~~~E~l~~~~~~~~~------------------~~~~~pf~r~ty~eA~~- 287 (617)
T 4ah6_A 229 EGSRP-DRQPEFTQIDIEMSFVD-QTGIQSLIEGLLQYSWPNDK------------------DPVVVPFPTMTFAEVLA- 287 (617)
T ss_dssp CSSCS-SSCSEEEEEEEEEESCC-HHHHHHHHHHHHHHHSCSSS------------------CCCCSSCCEEEHHHHHH-
T ss_pred ccCCC-CcCcceecceeeecCCC-HHHHHHHHHHHHHHHHHHhc------------------CccCCCceEeEHHHHHH-
Confidence 99865 56999999999999996 99999999999999987542 12346899999999996
Q ss_pred HHHcCCC
Q 013865 407 LKDAGVE 413 (435)
Q Consensus 407 L~~~g~~ 413 (435)
..|.+
T Consensus 288 --~ygsD 292 (617)
T 4ah6_A 288 --TYGTD 292 (617)
T ss_dssp --HTSSS
T ss_pred --HHcCC
Confidence 55543
No 16
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A*
Probab=100.00 E-value=5e-42 Score=346.03 Aligned_cols=170 Identities=19% Similarity=0.211 Sum_probs=140.0
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCCC-CCcceeEeccCC------CceeeccChHHHHhhhc
Q 013865 238 DIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSE-GGSAVFRLDYKG------QSACLAQSPQLHKQMSI 310 (435)
Q Consensus 238 dlr~~~~~~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~e-gga~~F~v~~~~------~~~~L~~Spql~lq~~i 310 (435)
..|++ ++++|++||.|+++||+||.++||+||+||+|++++++ +++.+|.++||+ .++||+||||||||+++
T Consensus 27 ~~~~~-~~~~lr~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~~~~a~~~~F~~~~~~~~~~~~~~~yL~~Spql~~k~l~ 105 (345)
T 3a5y_A 27 WQPSA-SIPNLLKRAAIMAEIRRFFADRGVLEVETPCMSQATVTDIHLVPFETRFVGPGHSQGMNLWLMTSPEYHMKRLL 105 (345)
T ss_dssp TSCSS-CHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCCCCTTCCCCEEEECCSTTSCCEEEEECSCSHHHHHHHH
T ss_pred cCCch-HHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEecCCCCCccceEEEEecCcccccCCCEeecCCHHHHHHHHH
Confidence 34555 88999999999999999999999999999999987765 467899999997 78999999999999999
Q ss_pred cCCCceeEEEecceecCCCCCCccccccccceeeeeccccHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhcCCCcccC
Q 013865 311 CGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLK 390 (435)
Q Consensus 311 ~~g~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~ 390 (435)
++|++||||||||||||++ |.||+||||||||||+|.+ |+|+|+++|+||+++++.
T Consensus 106 ~~g~~rvyqIg~~FR~E~~-~~rH~pEFt~lE~e~af~d-~~d~m~~~E~li~~v~~~---------------------- 161 (345)
T 3a5y_A 106 VAGCGPVFQLCRSFRNEEM-GRYHNPEFTMLEWYRPHYD-MYRLMNEVDDLLQQVLDC---------------------- 161 (345)
T ss_dssp HTTCCSEEEEEEEECCCCC-BTTBCSEEEEEEEEEETCC-HHHHHHHHHHHHHHHHCC----------------------
T ss_pred HcCCCcEEEEEcceeCCCC-cccccchhheeeeeeeCCC-HHHHHHHHHHHHHHHHcC----------------------
Confidence 9999999999999999998 9999999999999999996 999999999999999861
Q ss_pred CCCCCceeeHHHHHHH-----------------HHHcCCC-CCCC-CCCCcHHHHHHHHHhhc
Q 013865 391 YKPKTLRLTFEEGVQM-----------------LKDAGVE-IDPL-GDLNTESERKLGQLVLE 434 (435)
Q Consensus 391 ~~~p~~rit~~eai~l-----------------L~~~g~~-~~~~-~dl~te~E~~L~~~vke 434 (435)
.||+||||.||++. +++.|+. +.++ +|+.+..|+.|+++|.+
T Consensus 162 --~~~~rity~ea~~~~~g~d~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~e~~l~~~ve~ 222 (345)
T 3a5y_A 162 --PAAESLSYQQAFLRYLEIDPLSADKTQLREVAAKLDLSNVADTEEDRDTLLQLLFTFGVEP 222 (345)
T ss_dssp --CCCEEEEHHHHHHHHTCCCTTCCC------------------------HHHHHHHHHHTGG
T ss_pred --CCCcEeeHHHHHHHHhCCCCCCCCHHHHHHHHHHcCCcccCCCcCCHhHHHHHHHHHHHHH
Confidence 26788888888743 3444555 5555 67888999999988753
No 17
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A*
Probab=100.00 E-value=2.8e-37 Score=305.54 Aligned_cols=157 Identities=24% Similarity=0.335 Sum_probs=142.4
Q ss_pred cccccccccHHHHHHHHHHHHHHHHHHHHhhcCCeEEeeCceeecc--------CCCCCcceeEeccCCCceeeccChHH
Q 013865 233 NNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAG--------SSEGGSAVFRLDYKGQSACLAQSPQL 304 (435)
Q Consensus 233 ~~R~Ldlr~~~~~~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~--------~~egga~~F~v~~~~~~~~L~~Spql 304 (435)
+|||||||++ ++++|++|+.|++.+|+||.++||+||+||+|..+ .+|| +++|.++|+|+++||++|||+
T Consensus 1 ~~r~l~lr~~-~~~~~~~rs~i~~~ir~~f~~~GF~EVeTP~l~~~~~~~~~~~~~e~-a~~f~~~~~~~~~~L~~Spe~ 78 (294)
T 1nnh_A 1 MNAVEIISRE-ISPTLDIQTKILEYMTDFFVKEGFKWLLPVIISPITDPLWPDPAGEG-MEPAEVEIYGVKMRLTHSMIL 78 (294)
T ss_dssp -CHHHHHTSC-CHHHHHHHHHHHHHHHHHHHHTTCEEECCCCEESCCCCCCSCTTCCC-CCCCEEEETTEEEEECSCSHH
T ss_pred CchHHhhhcc-hHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEEccchhccCCCCCc-ceeEEEEcCCCCEEeccChHH
Confidence 5899999999 99999999999999999999999999999999998 7777 999999999999999999999
Q ss_pred HHhhhccCCCceeEEEecceecCC--CCCCccccccccceeeeeccccHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhh
Q 013865 305 HKQMSICGDFGRVFETGPVFRAED--SYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAK 382 (435)
Q Consensus 305 ~lq~~i~~g~~rVfeIgp~FR~E~--s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~ 382 (435)
|+|+++++|++|||+||||||+|+ +++.||+|||||||+|++|.+ ++|+|+++|+|++++++.+.+. ++.
T Consensus 79 ~~~~l~~~g~~rvf~ig~~FR~E~pq~~~~RH~~EFtqle~e~~~~~-~~~l~~~~e~l~~~l~~~~~~~-------~~~ 150 (294)
T 1nnh_A 79 HKQLAIAMGLKKIFVLSPNIRLESRQKDDGRHAYEFTQLDFEVERAK-MEDIMRLIERLVYGLFRKAEEW-------TGR 150 (294)
T ss_dssp HHHHHHHTTCCEEEEEEEEECCCCGGGCSSSCCSEEEEEEEEEETCC-HHHHHHHHHHHHHHHHHHHHHH-------HSS
T ss_pred HHHHHhhcCccceEEEEccEeCCCCCCCCCccccceeEEEEEecCCC-HHHHHHHHHHHHHHHHHHHHhh-------hcc
Confidence 999999999999999999999999 878999999999999999996 9999999999999999877542 111
Q ss_pred cCCCcccC-CCCCCceeeHHHHHH
Q 013865 383 QYPFEPLK-YKPKTLRLTFEEGVQ 405 (435)
Q Consensus 383 ~~~~~~~~-~~~p~~rit~~eai~ 405 (435)
. ++ +. +|+|+||.||++
T Consensus 151 ~-----i~~~~-~~~r~~y~ea~~ 168 (294)
T 1nnh_A 151 E-----FPKTK-RFEVFEYSEVLE 168 (294)
T ss_dssp C-----CCCCS-SCEEEEHHHHHH
T ss_pred c-----cccCC-CceEeEHHHHHH
Confidence 1 22 22 399999999995
No 18
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A*
Probab=99.89 E-value=6.3e-25 Score=216.52 Aligned_cols=165 Identities=19% Similarity=0.273 Sum_probs=132.1
Q ss_pred CCceeEEEEEeEEEEeecC-CCCCcccccccchHHHHHhhhhcCCCCCCCCccccccccccccccHHHHHHHHH-----H
Q 013865 178 GATQQVEVQIKKLYCVSRA-AKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRI-----Q 251 (435)
Q Consensus 178 ~~t~~lEi~v~~i~vls~~-~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~etrl~~R~Ldlr~~~~~~i~~~-----r 251 (435)
.+.|++||++++|.+|++| .+||+++++. ..|+++||||+|++..++++++ +
T Consensus 22 ~~~~~~ei~~~~~~vl~~a~~~~P~~~~~~----------------------~~~l~~r~l~~R~~~~~~i~~~g~~~~~ 79 (290)
T 3qtc_A 22 SAPALTKSQTDRLEVLLNPKDEISLNSGKP----------------------FRELESELLSRRKKDLQQIYAEERENYL 79 (290)
T ss_dssp --CCCCHHHHHHHHHHCCTTCC----CCSC----------------------HHHHHHHHHHHHHHHHHHHHHTTCCCHH
T ss_pred CCCceEEEEhhhhhhhccCCCCCCCCcchh----------------------hhhhhhHHHHhccchHHHHhccccccHH
Confidence 4458899999999999999 8999976431 2389999999999999999999 9
Q ss_pred HHHHHHHHHHhhcCCeEEeeCceeeccCCC------CCcceeE-eccCCCceeec--cChHHHHhhhc----cCCCceeE
Q 013865 252 SQVGNIFRQFLLSENFVEIHTPKLIAGSSE------GGSAVFR-LDYKGQSACLA--QSPQLHKQMSI----CGDFGRVF 318 (435)
Q Consensus 252 s~i~~~~r~fl~~~gF~EV~TP~l~~~~~e------gga~~F~-v~~~~~~~~L~--~Spql~lq~~i----~~g~~rVf 318 (435)
+.+.+.+|++|..+||.||.||+|++..+. ++...+. +.+|+..++|| +||+|+.++.. .++..|+|
T Consensus 80 ~~i~~~ir~~l~~~Gf~EV~Tp~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~LR~slsp~L~~~l~~n~~~~~~p~rlf 159 (290)
T 3qtc_A 80 GKLEREITRFFVDRGFLEIKSPILIPLEYIERMGIDNDTELSKQIFRVDKNFCLRPMLTPNLYNYLRKLDRALPDPIKIF 159 (290)
T ss_dssp HHHHHHHHHHHHHTTCEEECCCSEEETHHHHHTTCCTTSSGGGGCCEETTTEEECSCSHHHHHHHHHHHTTTSCSSEEEE
T ss_pred HHHHHHHHHHHHHCCCEEEECCceeeHHHHHhcCCCcCCchhhhheeeCCCeeEcccChHHHHHHHHHhhccCCCCeEEE
Confidence 999999999999999999999999876431 2221222 44678899999 99999976553 25668999
Q ss_pred EEecceecCCCCCCccccccccceeeeeccc-cHHHHHHHHHHHHHHH
Q 013865 319 ETGPVFRAEDSYTHRHLCEFTGLDVEMEIKK-HYSEVMDIVDRLFVTI 365 (435)
Q Consensus 319 eIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~-~~~d~m~~~e~li~~i 365 (435)
|||+|||+|+. +.+|++||||+|+++++.+ ++.++..+++.++..+
T Consensus 160 eiG~vFR~E~~-~~~~~~Ef~ql~~~~~g~~~~f~elkg~le~ll~~l 206 (290)
T 3qtc_A 160 EIGPCYRKESD-GKEHLEEFTMLVFWQMGSGCTRENLESIITDFLNHL 206 (290)
T ss_dssp EEEEEECCCSC-SSSCCSEEEEEEEEEESTTCCHHHHHHHHHHHHHHH
T ss_pred EEcCEEecCCC-CCcCcchheEEEEEEEcCChHHHHHHHHHHHHHHHc
Confidence 99999999974 7899999999999999853 4778888888887764
No 19
>2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A*
Probab=99.07 E-value=4.2e-10 Score=110.86 Aligned_cols=113 Identities=11% Similarity=0.120 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHhhcCCeEEeeCceeeccC----C--CCCc-------ceeEeccCCCceeeccChHHHHhhhccCC----
Q 013865 251 QSQVGNIFRQFLLSENFVEIHTPKLIAGS----S--EGGS-------AVFRLDYKGQSACLAQSPQLHKQMSICGD---- 313 (435)
Q Consensus 251 rs~i~~~~r~fl~~~gF~EV~TP~l~~~~----~--egga-------~~F~v~~~~~~~~L~~Spql~lq~~i~~g---- 313 (435)
.+.+.+.+|++|..+||.||.+|.+.... . -+.. ++|. .+...+||+|.-..+..+++.+
T Consensus 55 ~~~~~~~iR~~l~~~Gf~Ev~~s~l~~~~~nf~~l~~~~~~par~~~d~~~---l~e~~vLRtsl~p~ll~~l~~N~~~~ 131 (294)
T 2rhq_A 55 LTRTVEEIEDLFLGLGYEIVDGYEVEQDYYNFEALNLPKSHPARDMQDSFY---ITDEILMRTHTSPVQARTMEKRNGQG 131 (294)
T ss_dssp HHHHHHHHHHHHHTTTCEECCCCSEEEHHHHTGGGTCCTTCGGGCTTTSCB---SSSSEEECSSSHHHHHHHHHHTTTCS
T ss_pred HHHHHHHHHHHHHHCCCEEEcCcceeeehhhHHhhCCCCCccccccCCcEE---EcCcceeeccCHHHHHHHHHhcCCCC
Confidence 34578899999999999999999886421 0 0000 0232 2356788888777777777766
Q ss_pred CceeEEEecceecCCCCCCccccccccceeeeecc-ccHHHHHHHHHHHHHHHHh
Q 013865 314 FGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIK-KHYSEVMDIVDRLFVTIFD 367 (435)
Q Consensus 314 ~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~-~~~~d~m~~~e~li~~i~~ 367 (435)
--|+||||+|||+++. +.+|+|||+||++++++. -++.|++.+++.++..++.
T Consensus 132 ~~riFEiG~Vfr~d~~-d~~h~~Ef~~Le~~~~g~~~df~dlKg~le~ll~~l~g 185 (294)
T 2rhq_A 132 PVKIICPGKVYRRDSD-DATHSHQFTQIEGLVVDKNIKMSDLKGTLELVAKKLFG 185 (294)
T ss_dssp CEEEEEEEEEECCCCC-BTTBCSEEEEEEEEEEESSCCHHHHHHHHHHHHHHHHC
T ss_pred CccEEEEcCEEecCCC-CCCCCChhhEEEEEEECCCCCHHHHHHHHHHHHHHHhC
Confidence 6799999999998763 567999999999999983 1489999999999998864
No 20
>1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A* 2amc_A*
Probab=98.96 E-value=2.1e-09 Score=108.27 Aligned_cols=113 Identities=15% Similarity=0.132 Sum_probs=81.0
Q ss_pred HHHHHHHHHHhhcCCeEEeeCceeeccC-------CCC---C---cceeEecc-CC-----------Cceeec--cChHH
Q 013865 252 SQVGNIFRQFLLSENFVEIHTPKLIAGS-------SEG---G---SAVFRLDY-KG-----------QSACLA--QSPQL 304 (435)
Q Consensus 252 s~i~~~~r~fl~~~gF~EV~TP~l~~~~-------~eg---g---a~~F~v~~-~~-----------~~~~L~--~Spql 304 (435)
+.+.+.+|++|..+||.||.+|.+.... ... + .++|.+.- .. ....|| .||.+
T Consensus 104 ~~~~~~Ir~~f~~~Gf~Ev~~p~v~~~~~nfd~L~~p~~hpar~~~dt~~l~nP~s~~~~~~~~~~~~~~vLRt~tsp~l 183 (350)
T 1b7y_A 104 TLMERELVEIFRALGYQAVEGPEVESEFFNFDALNIPEHHPARDMWDTFWLTGEGFRLEGPLGEEVEGRLLLRTHTSPMQ 183 (350)
T ss_dssp HHHHHHHHHHHHTTTCEECCCCSEEEHHHHTTTTTCCSSSTTTTSSCCCBEECSSCCCBCTTSCBCCSCEEECSSSTHHH
T ss_pred HHHHHHHHHHHHHCCCEEEECcchhcchhHHHhhCCCCCCccccccccEEEcCccccccccccccccccceeeccchHHH
Confidence 3477889999999999999999886421 100 0 22344431 11 334455 56655
Q ss_pred HHhhhccCC-C-ceeEEEecceecCCCCCCccccccccceeeeeccc-cHHHHHHHHHHHHHHHHh
Q 013865 305 HKQMSICGD-F-GRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKK-HYSEVMDIVDRLFVTIFD 367 (435)
Q Consensus 305 ~lq~~i~~g-~-~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~-~~~d~m~~~e~li~~i~~ 367 (435)
. .++..+ . -|+||||+|||++.. +.+|+|||+|||+++.+.+ ++.|++..++.++..++.
T Consensus 184 l--r~l~~~~~piriFEiGrVFR~d~~-d~tH~pEF~qlegl~~g~~v~f~dLKg~le~ll~~lfG 246 (350)
T 1b7y_A 184 V--RYMVAHTPPFRIVVPGRVFRFEQT-DATHEAVFHQLEGLVVGEGIAMAHLKGAIYELAQALFG 246 (350)
T ss_dssp H--HHHHHCCSSEEEEEEEEEECCCCC-CSSCCSEEEEEEEEEEETTCCHHHHHHHHHHHHHHHSC
T ss_pred H--HHHHhcCCCeeEEEeeeEEECCCC-CCCCCChhHEEEEEEECCCCCHHHHHHHHHHHHHhhcC
Confidence 5 344432 3 489999999999874 6789999999999998851 489999999999998865
No 21
>12as_A Asparagine synthetase; ligase, nitrogen fixation; HET: AMP; 2.20A {Escherichia coli K12} SCOP: d.104.1.1 PDB: 11as_A*
Probab=98.78 E-value=5.5e-08 Score=95.35 Aligned_cols=154 Identities=12% Similarity=0.193 Sum_probs=116.6
Q ss_pred HHHHHHHHHHHHHHhh-----cCCeEEeeCceeeccCCC-----CC-cceeEeccC---CCceeeccChHHHHhhhccC-
Q 013865 248 FRIQSQVGNIFRQFLL-----SENFVEIHTPKLIAGSSE-----GG-SAVFRLDYK---GQSACLAQSPQLHKQMSICG- 312 (435)
Q Consensus 248 ~~~rs~i~~~~r~fl~-----~~gF~EV~TP~l~~~~~e-----gg-a~~F~v~~~---~~~~~L~~Spql~lq~~i~~- 312 (435)
++-....+.++++||. +.||++|..|++....+. .| ..|-.+++. |..+-+.+|--.||++++..
T Consensus 5 ~~~tq~aI~~iK~~f~~~l~~~L~L~rVsaPlfv~~~~GlnD~LnG~ErpV~f~i~~~~~~~~eivhSLaKWKR~aL~~y 84 (330)
T 12as_A 5 YIAKQRQISFVKSHFSRQLEERLGLIEVQAPILSRVGDGTQDNLSGAEKAVQVKVKALPDAQFEVVHSLAKWKRQTLGQH 84 (330)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCEEECCCCSEEETTSSCSCCTTTTCCCCEECCSSSTTCCEEECSCCTTHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcEEecCCEEecCCCCCCCCCCCceecceEecccCCCceEEEeeeHHHHHHHHHHhC
Confidence 4456678889999999 899999999999864321 13 234444433 78899999999999999864
Q ss_pred CC---ceeEEEecceecCCC-CCCccccccccceeeeeccccHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhcCCCcc
Q 013865 313 DF---GRVFETGPVFRAEDS-YTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEP 388 (435)
Q Consensus 313 g~---~rVfeIgp~FR~E~s-~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~ 388 (435)
|| +++|+-.++.|.+.. -+++|.-+|+|.|||..+.. .+..|++++++++.|+..+...- ..+...|...+
T Consensus 85 ~f~~geGlytdMnaIR~dee~ld~~HS~yvDQwDWE~vi~~-~~R~~~~Lk~tV~~Iy~~ik~tE----~~~~~~y~l~p 159 (330)
T 12as_A 85 DFSAGEGLYTHMKALRPDEDRLSPLHSVYVDQWDWERVMGD-GERQFSTLKSTVEAIWAGIKATE----AAVSEEFGLAP 159 (330)
T ss_dssp TCCTTCEEEEEEEEECTTCSCCCSSCCSEEEEEEEEEECCT-TCCSHHHHHHHHHHHHHHHHHHH----HHHHHHSCCCC
T ss_pred CCCCCCeeEecCcccccCcccCCCceeEEEeeeeeEEeccc-cchHHHHHHHHHHHHHHHHHHHH----HHHHHHhccCc
Confidence 58 999999999997654 68999999999999999976 57889999999888887765321 12344452211
Q ss_pred cCCCCCCceeeHHHHHHHH
Q 013865 389 LKYKPKTLRLTFEEGVQML 407 (435)
Q Consensus 389 ~~~~~p~~rit~~eai~lL 407 (435)
. +..++..||..|..+++
T Consensus 160 ~-Lp~~i~fitsqeL~~~Y 177 (330)
T 12as_A 160 F-LPDQIHFVHSQELLSRY 177 (330)
T ss_dssp C-SCSSCEEEEHHHHHHHS
T ss_pred C-CCCceEEEeHHHHHHHc
Confidence 1 45688999999988753
No 22
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A
Probab=98.77 E-value=7.5e-09 Score=101.66 Aligned_cols=112 Identities=22% Similarity=0.343 Sum_probs=79.8
Q ss_pred HHHHHHHHHHhhcCCeEEeeCceeeccC---CCCC-c--ceeE-eccCCCceeecc--ChHHHH--hhhccCCCc---ee
Q 013865 252 SQVGNIFRQFLLSENFVEIHTPKLIAGS---SEGG-S--AVFR-LDYKGQSACLAQ--SPQLHK--QMSICGDFG---RV 317 (435)
Q Consensus 252 s~i~~~~r~fl~~~gF~EV~TP~l~~~~---~egg-a--~~F~-v~~~~~~~~L~~--Spql~l--q~~i~~g~~---rV 317 (435)
..+.+.+|++|...||.||.||.|.... ..|. . +.|. +++.+..++||. +|.+.. ... ...-+ |+
T Consensus 74 ~~l~~~ir~~~~~~Gf~EV~tP~Le~~~l~~~~g~~~~~~m~~~~npl~e~~~LRp~l~p~l~~~~r~~-~~~~~~Plrl 152 (288)
T 3dsq_A 74 LELEEKLAKALHQQGFVQVVTPTIITKSALAKMTIGEDHPLFSQVFWLDGKKCLRPMLAPNLYTLWREL-ERLWDKPIRI 152 (288)
T ss_dssp HHHHHHHHHHHHTTTCEECCCCSEEEHHHHHTTSSCC--CCTTTSCEEETTEEECSCSHHHHHHHHHHH-TTTSCSCEEE
T ss_pred HHHHHHHHHHHHHCCCEEEECCeeecHHHHhhcCCCcccccEEeecccccchhhhhcChHHHHHHHHHH-HhCCCCCEEE
Confidence 5789999999999999999999998533 1111 1 2232 123446789994 566552 211 12233 99
Q ss_pred EEEecceecCCCCCCccccccccceeeeeccc---cHHHHHHHHHHHHHHH
Q 013865 318 FETGPVFRAEDSYTHRHLCEFTGLDVEMEIKK---HYSEVMDIVDRLFVTI 365 (435)
Q Consensus 318 feIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~---~~~d~m~~~e~li~~i 365 (435)
|+||+|||+|.. +..|++||+|+|+++.... ++.++..+++.++..+
T Consensus 153 feiG~vFR~E~~-~~~r~~EF~qle~~i~g~~~~~~f~elkg~le~ll~~L 202 (288)
T 3dsq_A 153 FEIGTCYRKESQ-GAQHLNEFTMLNLTELGTPLEERHQRLEDMARWVLEAA 202 (288)
T ss_dssp EEEEEEECSCCS-SSCCCSEEEEEEEEEETCCGGGHHHHHHHHHHHHHHHH
T ss_pred EEEeeEEecCCC-CCCcCccEEEEEEEEEcCCchhhHHHHHHHHHHHHHHc
Confidence 999999999986 6789999999999987641 2677888888887766
No 23
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=98.26 E-value=3.3e-06 Score=87.15 Aligned_cols=114 Identities=12% Similarity=0.186 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccC----C----CCCcceeEeccCCCceeeccChH-----HHHhhhccC
Q 013865 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS----S----EGGSAVFRLDYKGQSACLAQSPQ-----LHKQMSICG 312 (435)
Q Consensus 246 ~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~----~----egga~~F~v~~~~~~~~L~~Spq-----l~lq~~i~~ 312 (435)
.-.+++..|.+++++++...||.||.||.|.... + ..+.+.|.+. +..+||+-..+ +|....+..
T Consensus 170 ~ga~l~~~L~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sG~~~~f~~emy~~~--~~~l~LrPt~e~~i~~~~~~~i~s~ 247 (425)
T 2dq3_A 170 WGARLERALINFMLDLHTKKGYKEICPPHLVKPEILIGTGQLPKFEEDLYKCE--RDNLYLIPTAEVPLTNLYREEILKE 247 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHHHHSCTTTTGGGSCBCT--TTCCEECSSTHHHHHGGGTTEEEET
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHHhcCCCCcChhhheEec--CCeEEEcCCCcHHHHHHHHhhcccc
Confidence 4567789999999999999999999999998643 1 1122355543 67889985443 444443332
Q ss_pred -CC-ceeEEEecceecCCCCCC------ccccccccceeeeeccccHHHHHHHHHHHHH
Q 013865 313 -DF-GRVFETGPVFRAEDSYTH------RHLCEFTGLDVEMEIKKHYSEVMDIVDRLFV 363 (435)
Q Consensus 313 -g~-~rVfeIgp~FR~E~s~t~------rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~ 363 (435)
.+ -|+|++|+|||+|.+... --..||+|+|++.-.. -++..+..++++.
T Consensus 248 ~~LPlrl~~~g~~FR~E~~~~Gr~~~Gl~R~reF~q~E~~~f~~--pe~s~~~~~e~i~ 304 (425)
T 2dq3_A 248 ENLPIYLTAYTPCYRREAGAYGKDIRGIIRQHQFDKVELVKIVH--PDTSYDELEKLVK 304 (425)
T ss_dssp TTCCEEEEEEEEEECCCCSCCSSSCSSSSSCSEEEEEEEEEEEC--GGGHHHHHHHHHH
T ss_pred ccCCeEEEEecCEecCCCCcccccccCcccccceEEeeEEEECC--HHHHHHHHHHHHH
Confidence 23 499999999999985311 1345999999976432 2334444444443
No 24
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A*
Probab=98.24 E-value=2e-06 Score=87.73 Aligned_cols=108 Identities=19% Similarity=0.211 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCC---CC-----CcceeEeccCCCceeeccChHH-----HHhhhccC
Q 013865 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS---EG-----GSAVFRLDYKGQSACLAQSPQL-----HKQMSICG 312 (435)
Q Consensus 246 ~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~---eg-----ga~~F~v~~~~~~~~L~~Spql-----~lq~~i~~ 312 (435)
.-.+++..|.+.+|+.|...||.||.||+|..... -| +.+.|.++--+..++|+-...- |.+.+...
T Consensus 28 ~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~sG~~~~~~~em~~~d~~~~~~~LrP~~~~~~~~~~~~~~~s~ 107 (401)
T 1evl_A 28 DGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTSSENREYCIKPMNCPGHVQIFNQGLKSY 107 (401)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHTHHHHSGGGCCEEEETTEEEEECSCSHHHHHHHHTSSCCBG
T ss_pred hHHHHHHHHHHHHHHHHHHcCCEEEECCeeccHHHHHhcCcHhhhchhhEeEecCCceEEEcCCCCHHHHHHHHhhhhhh
Confidence 45677889999999999999999999999986430 01 2246665556788999966543 33322111
Q ss_pred -CC-ceeEEEecceecCCCCCCc----cccccccceeeeeccccHHHHHH
Q 013865 313 -DF-GRVFETGPVFRAEDSYTHR----HLCEFTGLDVEMEIKKHYSEVMD 356 (435)
Q Consensus 313 -g~-~rVfeIgp~FR~E~s~t~r----Hl~EFt~lE~e~a~~~~~~d~m~ 356 (435)
.+ -|+|+||+|||+|.+ +++ -..||+|+|+|. |.+ ..++..
T Consensus 108 ~~lP~r~~~~g~~fR~E~~-~p~~Gl~R~reF~q~d~~~-f~~-~~~~~~ 154 (401)
T 1evl_A 108 RDLPLRMAEFGSCHRNEPS-GSLHGLMRVRGFTQDDAHI-FCT-EEQIRD 154 (401)
T ss_dssp GGCSEEEEEEEEEECCCCG-GGCBTTTBCSEEEEEEEEE-EEC-GGGHHH
T ss_pred hhCChhhccccceecCCCC-cccccccccCcEEecceEE-eCC-HHHHHH
Confidence 22 499999999999985 223 357999999994 553 344433
No 25
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1
Probab=98.24 E-value=1.4e-06 Score=89.12 Aligned_cols=118 Identities=18% Similarity=0.248 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccC----CCCC------cceeEe-ccCCCceeeccCh--H---HHHhhh
Q 013865 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS----SEGG------SAVFRL-DYKGQSACLAQSP--Q---LHKQMS 309 (435)
Q Consensus 246 ~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~----~egg------a~~F~v-~~~~~~~~L~~Sp--q---l~lq~~ 309 (435)
.-.+++..|.+.+|+.|...||.||.||+|.... +-|| .+.|.+ +--|+.++|+--. . +|....
T Consensus 14 ~~~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~~~g~~~~~~~~~m~~~~D~~g~~~~Lrp~~t~~~~r~~~~~~ 93 (420)
T 1qe0_A 14 EDSKKWRYIENQLDELMTFYNYKEIRTPIFESTDLFARGVGDSTDVVQKEMYTFKDKGDRSITLRPEGTAAVVRSYIEHK 93 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCEECBCCSEEEHHHHCC-----------CCEEECHHHHCCEEECSCSHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEccCcccchHHHhhhccCCccchhhhheEEEEcCCCCEEEeCCCChHHHHHHHHhcc
Confidence 3567788999999999999999999999998643 1112 135655 3346778887332 2 222222
Q ss_pred cc--CCC-ceeEEEecceecCCCCCCccccccccceeeeeccccH---HHHHHHHHHHHHH
Q 013865 310 IC--GDF-GRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHY---SEVMDIVDRLFVT 364 (435)
Q Consensus 310 i~--~g~-~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~---~d~m~~~e~li~~ 364 (435)
.. ..+ -|+|+||+|||+|.+. .-+.-||+|+|+|.-..++. .+++.++.+++..
T Consensus 94 ~~~~~~lP~r~~~~g~vfR~E~~~-~gR~reF~q~~~e~~~~~~~~~d~e~i~~~~~~l~~ 153 (420)
T 1qe0_A 94 MQGNPNQPIKLYYNGPMFRYERKQ-KGRYRQFNQFGVEAIGAENPSVDAEVLAMVMHIYQS 153 (420)
T ss_dssp GGGCSSCSEEEEEEEEEECC--------CCEEEEEEEEEESCCCHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCCeEEEEecCEeecCCCc-CCCcccEEEeeEEEECCCCchhHHHHHHHHHHHHHH
Confidence 22 122 5999999999999753 34678999999998776533 3566666666654
No 26
>3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=98.22 E-value=1.8e-06 Score=85.95 Aligned_cols=110 Identities=12% Similarity=0.174 Sum_probs=76.5
Q ss_pred HHHHHHHHhhcCCeEEeeCceeeccC--------CCCC-cc-eeEeccCCCceeec--cChHHHHhhhccCCCc--eeEE
Q 013865 254 VGNIFRQFLLSENFVEIHTPKLIAGS--------SEGG-SA-VFRLDYKGQSACLA--QSPQLHKQMSICGDFG--RVFE 319 (435)
Q Consensus 254 i~~~~r~fl~~~gF~EV~TP~l~~~~--------~egg-a~-~F~v~~~~~~~~L~--~Spql~lq~~i~~g~~--rVfe 319 (435)
+.+.+|++|...||.|+.+|.+.... .+.+ +. .-.+-|.+....|| .||.+- + .+..+-. |+|+
T Consensus 112 ~~~~Ir~if~~~Gf~ev~~~~ve~~~~nFd~Ln~p~dhpaR~~~dt~~i~e~~vLRThtsp~~l-r-~l~~~~~pirife 189 (327)
T 3pco_A 112 TIDRIESFFGELGFTVATGPEIEDDYHNFDALNIPGHHPARADHDTFWFDTTRLLRTQTSGVQI-R-TMKAQQPPIRIIA 189 (327)
T ss_dssp HHHHHHHHHHTTTCBCCCCCSEECTCCCCCTTTCCSSSHHHHHTTCCBSSSSCEECSCTHHHHH-H-HHTTCCSSCCBCC
T ss_pred HHHHHHHHHHHCCCeEEECCCccCCHHHHHhhCCCCCChhhcccccEEeCCCceecccCCHHHH-H-HHHhCCCCeeEEe
Confidence 67889999999999999999885321 0111 00 00012334556676 456552 2 3343333 9999
Q ss_pred EecceecCCCCCCccccccccceeeeecc-ccHHHHHHHHHHHHHHHHh
Q 013865 320 TGPVFRAEDSYTHRHLCEFTGLDVEMEIK-KHYSEVMDIVDRLFVTIFD 367 (435)
Q Consensus 320 Igp~FR~E~s~t~rHl~EFt~lE~e~a~~-~~~~d~m~~~e~li~~i~~ 367 (435)
+|+|||++ .+.+|+|+|+|+|..+... -++.|+..+++.++..+|.
T Consensus 190 iGrVyR~d--~d~th~p~fhqlegl~v~~~v~f~dLKg~Le~~l~~lfg 236 (327)
T 3pco_A 190 PGRVYRND--YDQTHTPMFHQMEGLIVDTNISFTNLKGTLHDFLRNFFE 236 (327)
T ss_dssp EECCBCSC--CBTTBCSBCCEEEEEEEETTCCHHHHHHHHHHHHHHHHC
T ss_pred eccEEecC--CCcccCCcccEEEEEEECCCCCHHHHHHHHHHHHHHHhC
Confidence 99999997 3789999999999876532 1488999999999999975
No 27
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A*
Probab=98.17 E-value=5.8e-06 Score=85.97 Aligned_cols=104 Identities=15% Similarity=0.109 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccC----CC----CCcceeEe-ccCCCceeeccC-----hHHHHhhhcc
Q 013865 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS----SE----GGSAVFRL-DYKGQSACLAQS-----PQLHKQMSIC 311 (435)
Q Consensus 246 ~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~----~e----gga~~F~v-~~~~~~~~L~~S-----pql~lq~~i~ 311 (435)
.-.+++..|.+.+|+.|...||.||.||+|.... +. -+.+.|.+ +--|+.++|+.. +.++...+..
T Consensus 65 ~g~~~~~~i~~~ir~~~~~~G~~ei~tP~l~~~el~~~sg~~d~~~~em~~~~d~~~~~~~LrPt~ee~t~~i~r~~~~s 144 (458)
T 2i4l_A 65 LGHRVLKKIEQIVREEQNRAGAIELLMPTLQLADLWRESGRYDAYGPEMLRIADRHKRELLYGPTNEEMITEIFRAYIKS 144 (458)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHTHHHHSCTTSEEEECTTCCEEEECSCCHHHHHHHHHHHCCB
T ss_pred CHHHHHHHHHHHHHHHHHHcCCEEEEcCccCcHHHHHhcCCccccccceEEEEeCCCCeEEECCCChHHHHHHHHHHHhh
Confidence 5677888999999999999999999999998643 11 12345665 345788999863 2444443221
Q ss_pred C-CC-ceeEEEecceecCCCCCC--ccccccccceeeeeccc
Q 013865 312 G-DF-GRVFETGPVFRAEDSYTH--RHLCEFTGLDVEMEIKK 349 (435)
Q Consensus 312 ~-g~-~rVfeIgp~FR~E~s~t~--rHl~EFt~lE~e~a~~~ 349 (435)
. .+ -|+|+||+|||+|-+... --..||+|+|+|.-..+
T Consensus 145 ~~~lP~rl~~ig~~fR~E~~p~~Gl~R~REF~q~d~~~f~~~ 186 (458)
T 2i4l_A 145 YKSLPLNLYHIQWKFRDEQRPRFGVMRGREFLMKDAYSFDVD 186 (458)
T ss_dssp GGGCSEEEEEEEEEECCCSSCBTGGGBCSEEEEEEEEEEESS
T ss_pred ccccCeeeEEecCEeeCCCCCCCCcccccceEEeEEEEEECC
Confidence 1 12 499999999999942111 14589999999987654
No 28
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A*
Probab=98.17 E-value=5.3e-06 Score=83.23 Aligned_cols=117 Identities=17% Similarity=0.206 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCC------C----CCcceeEe-ccCCCceeecc--ChHHHHhhhcc-
Q 013865 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS------E----GGSAVFRL-DYKGQSACLAQ--SPQLHKQMSIC- 311 (435)
Q Consensus 246 ~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~------e----gga~~F~v-~~~~~~~~L~~--Spql~lq~~i~- 311 (435)
.-.+++..|.+.+|+.|...||.||.||++..... . .+.+.|++ +--|+.+.||- .|.+..-.+-.
T Consensus 34 ~~~~~~~~i~~~i~~~~~~~Gy~eI~tP~le~~el~~~s~~g~~~~~~~~my~~~D~~g~~l~LRpd~T~~~aR~~~~~~ 113 (344)
T 1z7m_A 34 NQVKSLRQIEGRLRKLFSLKNYQEVMPPSFEYTQLYTALESNGKTFNQEKMFQFIKHEGQSITLRYDFTLPLVRLYSQIK 113 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHHHHCSSSCCCTTSCCEEECTTCCEEEECCCSHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEecCcccCcHHHHhhccCCccccccccEEEEECCCCCEEecCCCCcHHHHHHHHhcC
Confidence 34567788999999999999999999999875321 1 12346765 44677888873 23322221111
Q ss_pred -CCCceeEEEecceecCCCCCCccccccccceeeeeccccH---HHHHHHHHHHHH
Q 013865 312 -GDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHY---SEVMDIVDRLFV 363 (435)
Q Consensus 312 -~g~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~---~d~m~~~e~li~ 363 (435)
..--|.|+||+|||+|.+. .-+.-||+|+++|.-..++. -+++.++.+++.
T Consensus 114 ~~~P~rl~y~g~vfR~e~p~-~gR~REF~Q~g~ei~g~~~~~aDaEvi~l~~~~l~ 168 (344)
T 1z7m_A 114 DSTSARYSYFGKIFRKEKRH-KGRSTENYQIGIELFGESADKSELEILSLALQVIE 168 (344)
T ss_dssp SCCCEEEEEEEECCCCCC--------CCEEEEEEEESSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECcEEccCCCC-CCCcceeEEEEEEEEcCCCcHHHHHHHHHHHHHHH
Confidence 1235999999999999763 44788999999998765432 245555544444
No 29
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Probab=98.14 E-value=1.2e-05 Score=82.81 Aligned_cols=104 Identities=14% Similarity=0.126 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccC---C-CC---CcceeEe-ccCCCceeecc--ChHHHHhhhccCC--
Q 013865 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS---S-EG---GSAVFRL-DYKGQSACLAQ--SPQLHKQMSICGD-- 313 (435)
Q Consensus 246 ~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~---~-eg---ga~~F~v-~~~~~~~~L~~--Spql~lq~~i~~g-- 313 (435)
.-.+++..|.+.+|+-|...||.||.||+|.... . -| +.+.|.+ +--|+.+.|+- .|.+..-.+-...
T Consensus 18 ~~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~~~em~~~~D~~g~~l~LrPd~t~~~aR~~~~~~~~~ 97 (434)
T 1wu7_A 18 EDMDVEKFIFKTAEEAAEAFGFRRIDFPSLEYLDLYRIKSGEELLQQTYSFVDKGGREVTLIPEATPSTVRMVTSRKDLQ 97 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECBCCSEEETHHHHTTSCTTGGGGSCEEECTTSCEEEECSCSHHHHHHHHTTCTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEeeccccccHHHhhhccCCccccceEEEECCCCCEEEeCCCChHHHHHHHHhcCCCC
Confidence 3456788999999999999999999999998643 1 11 2346776 44678888884 2333322111111
Q ss_pred C-ceeEEEecceecCCCCCCccccccccceeeeecccc
Q 013865 314 F-GRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKH 350 (435)
Q Consensus 314 ~-~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~ 350 (435)
+ -|.|+||++||.|.+.-. +.-||+|+++|.-..++
T Consensus 98 lP~rl~~~g~vfR~erp~~g-R~REF~Q~d~ei~g~~~ 134 (434)
T 1wu7_A 98 RPLRWYSFPKVWRYEEPQAG-RYREHYQFNADIFGSDS 134 (434)
T ss_dssp SSEEEEECCEEECCCCSCSS-CCSEEEEEEEEEESCCS
T ss_pred CCeEEEEEcCeecCCCCCCC-CccceEEeeEEEEcCCC
Confidence 2 499999999999976433 57899999999876654
No 30
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=98.06 E-value=7.7e-06 Score=88.54 Aligned_cols=101 Identities=17% Similarity=0.124 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCC---CCC-----cceeEe-ccCC-CceeeccChH-----HHHhhhc
Q 013865 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS---EGG-----SAVFRL-DYKG-QSACLAQSPQ-----LHKQMSI 310 (435)
Q Consensus 246 ~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~---egg-----a~~F~v-~~~~-~~~~L~~Spq-----l~lq~~i 310 (435)
.-.+++..|.+.+|+.|...||.||.||+|..... -|+ -+.|.+ +--+ +.++|+--.. +|.+...
T Consensus 269 ~g~~~~~~l~~~ir~~~~~~Gy~eV~tP~l~~~~l~~~sG~~d~~~~~mf~~~d~~~~~~~~LrP~~~~~~~~~~~~~~~ 348 (645)
T 1nyr_A 269 NGATIRREIERYIVDKEVSMGYDHVYTPVLANVDLYKTSGHWDHYQEDMFPPMQLDETESMVLRPMNCPHHMMIYANKPH 348 (645)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTEEECBCCSEEETHHHHHHTHHHHCTTSSCCCEEETTTEEEEECSSSHHHHHHHHHTSCC
T ss_pred CHHHHHHHHHHHHHHHHHHcCCEEEECCeeccHHHHhhCCCccccccCcceeEecCCCeEEEeCCCCCHHHHHHHHhhhh
Confidence 45788899999999999999999999999986431 121 234543 3346 7888885432 3333221
Q ss_pred c-CCC-ceeEEEecceecCCCCCCcc----ccccccceeeeecc
Q 013865 311 C-GDF-GRVFETGPVFRAEDSYTHRH----LCEFTGLDVEMEIK 348 (435)
Q Consensus 311 ~-~g~-~rVfeIgp~FR~E~s~t~rH----l~EFt~lE~e~a~~ 348 (435)
. ..+ -|+|+||+|||+|.+. .+| .-||||+|+|. |.
T Consensus 349 syr~LPlrl~~~g~~fR~E~~~-~~~GL~R~ReF~Q~d~~~-f~ 390 (645)
T 1nyr_A 349 SYRELPIRIAELGTMHRYEASG-AVSGLQRVRGMTLNDSHI-FV 390 (645)
T ss_dssp BGGGCCEEEEEEEEEECCCCTT-TCBTTTBCSEEEEEEEEE-EE
T ss_pred hccCCCeEEEEeccEEecCCCc-cccCcceeeeEEEccEEE-Ec
Confidence 1 122 3999999999999973 333 47999999998 54
No 31
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A
Probab=98.05 E-value=1.3e-05 Score=81.91 Aligned_cols=116 Identities=20% Similarity=0.294 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCC--CC-C-------cceeEe-ccCCCceeecc--ChHHHHhhh---c
Q 013865 247 IFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS--EG-G-------SAVFRL-DYKGQSACLAQ--SPQLHKQMS---I 310 (435)
Q Consensus 247 i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~--eg-g-------a~~F~v-~~~~~~~~L~~--Spql~lq~~---i 310 (435)
-.+++..|.+.+|+-|...||.||.||+|..... .+ | .+.|.+ +--|+.+.|+- .|.+..-.+ .
T Consensus 16 ~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~d~~~~em~~~~D~~g~~l~Lrpd~t~~~ar~~~~~~~ 95 (421)
T 1h4v_B 16 ELRMHQRIVATARKVLEAAGALELVTPIFEETQVFEKGVGAATDIVRKEMFTFQDRGGRSLTLRPEGTAAMVRAYLEHGM 95 (421)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEecccccccHHHhhhccCCcccccccceEEEECCCCCEEeeCCcchHHHHHHHHhccc
Confidence 4567888999999999999999999999976431 11 2 246765 44677888873 333333211 1
Q ss_pred c-CC-CceeEEEecceecCCCCCCccccccccceeeeeccccH---HHHHHHHHHHHH
Q 013865 311 C-GD-FGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHY---SEVMDIVDRLFV 363 (435)
Q Consensus 311 ~-~g-~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~---~d~m~~~e~li~ 363 (435)
. .. --|.|+||++||.|.+. .-+.-||+|+++|.-..++. .+++.++.+++.
T Consensus 96 ~~~~lP~rl~~~g~vfR~e~p~-~gR~REf~Q~g~e~~g~~~~~ad~e~i~~~~~~l~ 152 (421)
T 1h4v_B 96 KVWPQPVRLWMAGPMFRAERPQ-KGRYRQFHQVNYEALGSENPILDAEAVVLLYECLK 152 (421)
T ss_pred cccCCCeEEEEecCeecCCCCC-CCCcccEEEccEEEECCCChhhhHHHHHHHHHHHH
Confidence 1 11 24999999999999764 33568999999998765432 144444444443
No 32
>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A
Probab=98.04 E-value=2e-05 Score=82.40 Aligned_cols=115 Identities=13% Similarity=0.086 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCC---CCC------cceeEeccC-----CCceeeccChH-----HHH
Q 013865 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS---EGG------SAVFRLDYK-----GQSACLAQSPQ-----LHK 306 (435)
Q Consensus 246 ~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~---egg------a~~F~v~~~-----~~~~~L~~Spq-----l~l 306 (435)
.-.+++..|.+.+|+.|...||.||.||+|..... ++| .+.|.+..- +.+++||--.. +|.
T Consensus 42 ~g~~l~~~I~~~~r~~~~~~G~~ei~tP~l~~~el~~~~sgh~d~f~~emy~~~d~g~~~l~~~l~LRP~~~~~i~~~~~ 121 (477)
T 1hc7_A 42 YGYAIWENIQQVLDRMFKETGHQNAYFPLFIPMSFLRKEAEHVEGFSPELAVVTHAGGEELEEPLAVRPTSETVIGYMWS 121 (477)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECBCCSEEESTTC---------CCTTCEEEEEESSSEEEEEEEECSCSHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHcCCEEEecCccccHHHHhhcCCcccccccceEEEECCCCccCCCeEEEcCCCcHHHHHHHH
Confidence 34667889999999999999999999999987551 122 235665432 57899986554 566
Q ss_pred hhhccC-CC-ceeEEEecceecCCC-CCCccccccccceeeeeccccHHHHHHHHHHH
Q 013865 307 QMSICG-DF-GRVFETGPVFRAEDS-YTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRL 361 (435)
Q Consensus 307 q~~i~~-g~-~rVfeIgp~FR~E~s-~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~l 361 (435)
+.+... .+ -|+|+||+|||+|.+ .+.--.-||+|+|.+..+.+ ..++...+..|
T Consensus 122 ~~~~s~r~LP~rl~qig~vfR~E~~~rGl~R~REF~q~d~~~~~~~-~~~ad~E~~~~ 178 (477)
T 1hc7_A 122 KWIRSWRDLPQLLNQWGNVVRWEMRTRPFLRTSEFLWQEGHTAHAT-REEAEEEVRRM 178 (477)
T ss_dssp HHCCBGGGCCEEEEEEEEEECCCSSCBTTTBCSEEEEEEEEEEESS-HHHHHHHHHHH
T ss_pred hhhhccccCCeeeEeecCEEeCCCCCCCcceeEEEEEccEEEEeCC-HHHHHHHHHHH
Confidence 543321 33 399999999999964 12113469999999998875 55554444444
No 33
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans}
Probab=98.03 E-value=1.6e-05 Score=81.34 Aligned_cols=118 Identities=17% Similarity=0.197 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCC------CCCcceeEe-ccCCCceeecc--ChHHHH---hhhccCC
Q 013865 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS------EGGSAVFRL-DYKGQSACLAQ--SPQLHK---QMSICGD 313 (435)
Q Consensus 246 ~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~------egga~~F~v-~~~~~~~~L~~--Spql~l---q~~i~~g 313 (435)
.-.+++..|.+.+|+.|...||.||.||++..... ....+.|.+ +--|+.+.||- .|.+.. ..+-...
T Consensus 22 ~~~~~~~~i~~~l~~~~~~~Gy~eI~tP~lE~~el~~~~g~~~~~~my~f~D~~g~~l~LRpd~T~~~aR~~~~~~~~~~ 101 (400)
T 3od1_A 22 EWYKTKKNICDQMTEEINLWGYDMIETPTLEYYETVGVVSAILDQQLFKLLDQQGNTLVLRPDMTAPIARLVASSLKDRA 101 (400)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECBCCSEEETTTHHHHSSSCGGGSCEEECTTSCEEEECSCSHHHHHHHHHHHCSSSC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHhhcCCccccceEEEECCCCCEEEECCCCHHHHHHHHHhhcccCC
Confidence 34567888999999999999999999999964331 112346765 44567777772 233322 1111122
Q ss_pred C-ceeEEEecceecCCCCCCccccccccceeeeeccccH---HHHHHHHHHHHHH
Q 013865 314 F-GRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHY---SEVMDIVDRLFVT 364 (435)
Q Consensus 314 ~-~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~---~d~m~~~e~li~~ 364 (435)
+ -|.|+||+|||.|.+. .-+.-||+|+++|.-..++. -+++.++.+++..
T Consensus 102 ~P~r~~y~g~vfR~e~~~-~gR~Ref~Q~g~ei~G~~~~~aDaEvi~l~~~~l~~ 155 (400)
T 3od1_A 102 YPLRLAYQSNVYRAQQNE-GGKPAEFEQLGVELIGDGTASADGEVIALMIAALKR 155 (400)
T ss_dssp SCEEEEEEEEEECCCC----CCCSEEEEEEEEEESCCSHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCEEeCCCCC-CCCCCccEEeEEEEECCCChHhHHHHHHHHHHHHHH
Confidence 3 4999999999999864 44678999999998765433 2566666666654
No 34
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A*
Probab=97.99 E-value=1.3e-05 Score=81.94 Aligned_cols=116 Identities=19% Similarity=0.233 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCC---C-CC------cceeEe-ccCCCceeecc--ChHHHHhhhcc--
Q 013865 247 IFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS---E-GG------SAVFRL-DYKGQSACLAQ--SPQLHKQMSIC-- 311 (435)
Q Consensus 247 i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~---e-gg------a~~F~v-~~~~~~~~L~~--Spql~lq~~i~-- 311 (435)
-.+++..|.+.+|+-|...||.||.||++..... . |. .+.|.+ +--|+.+.|+- .|.+..-.+-.
T Consensus 17 ~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~d~~~~em~~~~D~~g~~l~Lrpd~t~~~aR~~~~~~~ 96 (423)
T 1htt_A 17 ETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYTFEDRNGDSLTLRPEGTAGCVRAGIEHGL 96 (423)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCEECBCCSEEEHHHHHHHHCSSSHHHHHTCEEEECTTSCEEEECSCSHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEecccccCHHHHHhhccCCchhhhhhheEEEEcCCCCEEEeCCCchHHHHHHHHhccc
Confidence 4567888999999999999999999999986431 1 21 246776 44677888873 23332211101
Q ss_pred -CC-CceeEEEecceecCCCCCCccccccccceeeeeccccHH---HHHHHHHHHHH
Q 013865 312 -GD-FGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYS---EVMDIVDRLFV 363 (435)
Q Consensus 312 -~g-~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~~---d~m~~~e~li~ 363 (435)
.. --|.|+||++||.|.+. .-+.-||+|+++|.-..++.. +++.++.+++.
T Consensus 97 ~~~~P~rl~~~g~vfR~e~p~-~gR~Ref~Q~d~e~~g~~~~~ad~e~i~~~~~~l~ 152 (423)
T 1htt_A 97 LYNQEQRLWYIGPMFRHERPQ-KGRYRQFHQLGCEVFGLQGPDIDAELIMLTARWWR 152 (423)
T ss_dssp STTCCEEEEEEEEEECCCCCC-SSCCSEEEEEEEEEESCCSHHHHHHHHHHHHHHHH
T ss_pred ccCCCeEEEEEcCEecCCCCC-CCccceeEEeeEEEECCCCchhhHHHHHHHHHHHH
Confidence 12 25999999999999764 446789999999987755332 34444444443
No 35
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis}
Probab=97.99 E-value=1.4e-05 Score=83.34 Aligned_cols=118 Identities=18% Similarity=0.245 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCC---C-CC------cceeEe-ccC-CCceeecc--ChHHHH---hh
Q 013865 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS---E-GG------SAVFRL-DYK-GQSACLAQ--SPQLHK---QM 308 (435)
Q Consensus 246 ~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~---e-gg------a~~F~v-~~~-~~~~~L~~--Spql~l---q~ 308 (435)
.-.+++..|.+.+|+.|...||.||.||+|..... . |. .+.|.+ +-- |+.+.|+- .|.+.. +.
T Consensus 44 ~~~~~~~~l~~~i~~~~~~~Gy~eI~tP~le~~el~~~~~G~~~d~~~~~my~~~D~~~g~~l~LRPd~t~~~ar~~~~~ 123 (467)
T 4e51_A 44 QDAGLWEFFEATVKSLLRAYGYQNIRTPIVEHTPLFTRGIGEVTDIVEKEMYSFVDALNGENLTLRPENTAAVVRAAIEH 123 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHTCTTSHHHHHTCCEEECTTTCCEEEECSCSHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHhhhccCCcccccccceEEEecCCCCCEEEeCcccHHHHHHHHHHc
Confidence 34667889999999999999999999999975431 1 22 236765 334 77888883 333322 21
Q ss_pred hccCC-CceeEEEecceecCCCCCCccccccccceeeeeccccH---HHHHHHHHHHHHH
Q 013865 309 SICGD-FGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHY---SEVMDIVDRLFVT 364 (435)
Q Consensus 309 ~i~~g-~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~---~d~m~~~e~li~~ 364 (435)
..... --|.|+||+|||.|.+.. -+.-||+|+++|+-..++. .+++.++.+++..
T Consensus 124 ~~~~~lP~r~~~~g~vfR~E~~~~-gR~ReF~Q~d~ei~g~~~~~adaEvi~l~~~~l~~ 182 (467)
T 4e51_A 124 NMLYDGPKRLWYIGPMFRHERPQR-GRYRQFHQVGVEALGFAGPDADAEIVMMCQRLWED 182 (467)
T ss_dssp TTTTTSCEEEEEEEEEECCCCC----CCSEEEEEEEEEETCCCSHHHHHHHHHHHHHHHH
T ss_pred ccccCCCEEEEEEccEEccCCCCC-CCcCceEEEEEEEEeCCChHHHHHHHHHHHHHHHH
Confidence 11111 249999999999998644 4567999999998654321 3566666666654
No 36
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP}
Probab=97.97 E-value=9.4e-06 Score=84.54 Aligned_cols=119 Identities=16% Similarity=0.210 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccC-----CCCCcc-eeEeccC----------------CCceeecc--C
Q 013865 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS-----SEGGSA-VFRLDYK----------------GQSACLAQ--S 301 (435)
Q Consensus 246 ~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~-----~egga~-~F~v~~~----------------~~~~~L~~--S 301 (435)
.-.+++..|.+.+|+.|...||.||.||++-... .+...+ .|.+.-- |+.+.||- .
T Consensus 24 ~~~~~~~~i~~~l~~~~~~~Gy~~i~tP~~E~~~~~~~~G~~~ke~m~~~~d~~~~g~~~~~~~~~~~~g~~l~LRpd~T 103 (465)
T 3net_A 24 SEKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAKGNQGDNIIYGLEPILPPNRQAEKDKSGDTGSEARALKFDQT 103 (465)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHGGGCC--CBEEEEEEEC----------------CCEEECSCSH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEeeccccccHHHHhccCCCCccceEEEecccccccccccccccCCCCCEEEeCCCCh
Confidence 3456788899999999999999999999984321 122234 6765322 57788872 2
Q ss_pred hHH---HHhhhccCC-CceeEEEecceecCCCCCCccccccccceeeeeccccH-----HHHHHHHHHHHHHH
Q 013865 302 PQL---HKQMSICGD-FGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHY-----SEVMDIVDRLFVTI 365 (435)
Q Consensus 302 pql---~lq~~i~~g-~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~-----~d~m~~~e~li~~i 365 (435)
|.+ +.+...... --|.|+||||||.|.+. .-+.-||+|+++|+-..++. -|++.++-+++..+
T Consensus 104 ~~~aR~~~~~~~~~~~p~r~~y~g~vfR~e~~~-~gr~Ref~Q~g~ei~G~~~~~a~~DaEvi~l~~~~l~~l 175 (465)
T 3net_A 104 VPLAAYIARHLNDLTFPFARYQMDVVFRGERAK-DGRFRQFRQCDIDVVGREKLSLLYDAQMPAIITEIFEAV 175 (465)
T ss_dssp HHHHHHHHHHGGGSCSSEEEEECCEEECBC-------CCEEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccccCCCeEEEEeccEEecCCCC-CCCcceeEEeeEEEECCCCccchhhHHHHHHHHHHHHHc
Confidence 332 222221112 24999999999999864 44678999999998664321 15777776766543
No 37
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A*
Probab=97.92 E-value=2.9e-05 Score=82.71 Aligned_cols=111 Identities=19% Similarity=0.215 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCC--C-C-----CcceeEe-ccCCCceeeccCh-----HHHHhhhcc
Q 013865 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS--E-G-----GSAVFRL-DYKGQSACLAQSP-----QLHKQMSIC 311 (435)
Q Consensus 246 ~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~--e-g-----ga~~F~v-~~~~~~~~L~~Sp-----ql~lq~~i~ 311 (435)
.-.+++..|.+.+|+.|...||.||.||+|..... . | +.+.|.+ +--++.++|+--. .+|...+..
T Consensus 45 ~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~sG~~~~~~~~m~~~~d~~~~~~~LrP~~~~~~~~~~~~~~~s 124 (572)
T 2j3l_A 45 LANRVLEKLKTIMREEFEKIDAVEMLMPALLPAELWKESGRYETYGPNLYRLKDRNDRDYILGPTHEETFTELIRDEINS 124 (572)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCEECBCCSEEETHHHHHHSHHHHSCTTSCEEECTTCCEEEECSCCHHHHHHHHHHHCCB
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHHhcCCccccchheEEEecCCCCeEEEccccHHHHHHHHHhhccC
Confidence 45778889999999999999999999999986531 1 2 2245665 3456889998444 244443321
Q ss_pred -CCC-ceeEEEecceecCCCCCCcc----ccccccceeeeeccccHHHHHHHHH
Q 013865 312 -GDF-GRVFETGPVFRAEDSYTHRH----LCEFTGLDVEMEIKKHYSEVMDIVD 359 (435)
Q Consensus 312 -~g~-~rVfeIgp~FR~E~s~t~rH----l~EFt~lE~e~a~~~~~~d~m~~~e 359 (435)
..+ -|+|+||+|||+|.+ + +| .-||+|+|+|.-..+ -.++...+.
T Consensus 125 ~~~lP~r~~~~g~~fR~E~~-~-~~Gl~R~ReF~q~d~~~f~~~-~~~~~~e~~ 175 (572)
T 2j3l_A 125 YKRLPLNLYQIQTKYRDEKR-S-RSGLLRGREFIMKDGYSFHAD-EASLDQSYR 175 (572)
T ss_dssp GGGCCEEEEEEEEEECCCSS-C-CTGGGSCSEEEEEEEEEEESS-HHHHHHHHH
T ss_pred hhhcCHhhheecCeeccCcC-c-ccCccccceeEEeeeEEEcCC-HHHHHHHHH
Confidence 123 399999999999986 3 33 479999999987653 334433333
No 38
>1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1
Probab=97.92 E-value=4.1e-05 Score=79.61 Aligned_cols=111 Identities=18% Similarity=0.156 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCC----CC-----CcceeEeccC-----CCceeeccChH-----HHH
Q 013865 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS----EG-----GSAVFRLDYK-----GQSACLAQSPQ-----LHK 306 (435)
Q Consensus 246 ~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~----eg-----ga~~F~v~~~-----~~~~~L~~Spq-----l~l 306 (435)
.-.+++..|.+.+|+.|...||.||.||+|..... -| +.+.|.+..- +..++|+--.. +|.
T Consensus 36 ~g~~l~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~~~G~~~~~~~emy~~~d~g~~~~~~~l~LRP~~~~~i~~~~~ 115 (459)
T 1nj8_A 36 YGFKIRRYTFEIIRNLLDESGHDEALFPMLIPEDLLAKEAEHIKGFEDEVYWVTHGGKTQLDVKLALRPTSETPIYYMMK 115 (459)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHCSSSGGGGGGCEEEEESSSSEEEEEEEECSSSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHcCCEEeeCCcccCHHHHhhhcCcccccchhhEEEeccCcccCCCeeEECCCCcHHHHHHHH
Confidence 44667889999999999999999999999986431 11 2346776543 57889985443 344
Q ss_pred hhhccC-CC-ceeEEEecceecCCCCCCc--cccccc-cceeeeeccccHHHHHHH
Q 013865 307 QMSICG-DF-GRVFETGPVFRAEDSYTHR--HLCEFT-GLDVEMEIKKHYSEVMDI 357 (435)
Q Consensus 307 q~~i~~-g~-~rVfeIgp~FR~E~s~t~r--Hl~EFt-~lE~e~a~~~~~~d~m~~ 357 (435)
+..... .+ -|+|+||+|||+|.+.+.- -.-||+ |+|.+..+.+ ..++...
T Consensus 116 ~~~~s~r~LP~rl~qig~~fR~E~~~~rGl~R~REF~qq~d~~~~~~~-~~~a~~e 170 (459)
T 1nj8_A 116 LWVKVHTDLPIKIYQIVNTFRYETKHTRPLIRLREIMTFKEAHTAHST-KEEAENQ 170 (459)
T ss_dssp TTCCBTTSCCCCEEEEECCBCCCCSCCBTTTBCSBCSCEEEEEEEESS-HHHHHHH
T ss_pred HhhhhcccCCeEEEEEccEecCccCCCCCceEeeeeeccCcEEEEECC-HHHHHHH
Confidence 432221 23 3999999999999862111 346999 9999988875 4554444
No 39
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=97.91 E-value=3.3e-05 Score=78.32 Aligned_cols=117 Identities=14% Similarity=0.131 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHHhhcCCeEEeeCceeeccCC-----C-CC-cceeEe-ccCCCceeecc--ChHHHHh---hhc-cCC
Q 013865 248 FRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS-----E-GG-SAVFRL-DYKGQSACLAQ--SPQLHKQ---MSI-CGD 313 (435)
Q Consensus 248 ~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~-----e-gg-a~~F~v-~~~~~~~~L~~--Spql~lq---~~i-~~g 313 (435)
.+++..|...+|+.|...||.||.||++..... + .. .+.|.+ +--|+.+.||- .|++..- .+- ...
T Consensus 37 ~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~el~~~~g~~~~~~~my~~~D~~g~~l~LRpd~T~~~aR~~~~~~~~~~~ 116 (373)
T 3rac_A 37 AKRRRAVETRLLSFVEDAGYEPVTSGLFEYVDTLLRARSPESSRDWIRLFDGGGDAVALRPEMTPSIARMAAPRVAAGRT 116 (373)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHTTSCTTSCCCCCBCCCCSSSCEEECSSSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEECCceeeHHHHhhcCCccchhceEEEECCCCCEEEECCcCHHHHHHHHHhccccCCC
Confidence 566788999999999999999999999875421 1 12 345655 33467777762 2332221 110 122
Q ss_pred CceeEEEecceecCCCC-----CCccccccccceeeeeccc-cH---HHHHHHHHHHHHH
Q 013865 314 FGRVFETGPVFRAEDSY-----THRHLCEFTGLDVEMEIKK-HY---SEVMDIVDRLFVT 364 (435)
Q Consensus 314 ~~rVfeIgp~FR~E~s~-----t~rHl~EFt~lE~e~a~~~-~~---~d~m~~~e~li~~ 364 (435)
--|.|+||+|||.|.+. ..-+.-||+|+++|.-..+ +. -+++.++.+++..
T Consensus 117 P~r~~y~g~vfR~e~~g~~~~~~~gR~ReF~Q~g~ei~g~~d~~~aDaEvi~l~~~~l~~ 176 (373)
T 3rac_A 117 PIRWCYCERVYRRTDDPASLSWASGKAAESTQVGIERIGEEASVDVDMDVLRLLHEASAA 176 (373)
T ss_dssp CCEEEEEEEEEECC------------CEEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEcceEccCCCcccccccCCccceeEEeeeEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 46999999999999751 2346789999999986654 22 2566666666654
No 40
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A
Probab=97.89 E-value=4e-05 Score=79.68 Aligned_cols=116 Identities=15% Similarity=0.176 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCC--CC-Cc----ceeEe-ccCCCceeecc--ChHHHHhhhccCC---
Q 013865 247 IFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS--EG-GS----AVFRL-DYKGQSACLAQ--SPQLHKQMSICGD--- 313 (435)
Q Consensus 247 i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~--eg-ga----~~F~v-~~~~~~~~L~~--Spql~lq~~i~~g--- 313 (435)
-.+++..|...+|+.|...||.||.||++..... .+ |. +.|.+ +--|+.+.||- .|.+..- ++...
T Consensus 42 ~~~~~~~i~~~i~~~~~~~Gy~eI~tP~lE~~el~~~~~G~~~~~~my~f~D~~g~~l~LRpd~T~~~aR~-~~~~~~~~ 120 (456)
T 3lc0_A 42 AMRCRRHLFDVFHATAKTFGFEEYDAPVLESEELYIRKAGEEITEQMFNFITKGGHRVALRPEMTPSLARL-LLGKGRSL 120 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEEEGGGGCCCSCCHHHHTCEEEECSSSCEEEECSCSHHHHHHH-HHHSCTTC
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCcEeehhhhccccccchhhceEEEEcCCCCEEecCCcCHHHHHHH-HHhcCccc
Confidence 3467888999999999999999999999976542 11 22 35665 34567777772 2333221 11111
Q ss_pred --CceeEEEecceecCCCCCCccccccccceeeeeccccH---HHHHHHHHHHHHH
Q 013865 314 --FGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHY---SEVMDIVDRLFVT 364 (435)
Q Consensus 314 --~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~---~d~m~~~e~li~~ 364 (435)
--|.|+||+|||.|.+. .-+.-||+|+++|+-..++. -+++.++.+++..
T Consensus 121 ~~P~r~~y~g~vfR~e~~~-~gR~ReF~Q~g~ei~G~~~~~~DaEvi~l~~~~l~~ 175 (456)
T 3lc0_A 121 LLPAKWYSIPQCWRYEAIT-RGRRREHYQWNMDIVGVKSVSAEVELVCAACWAMRS 175 (456)
T ss_dssp CSSEEEEECCEEECCCC------CCEEEEEEEEEESCCSTHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEeccEEecCCCC-CCCccceEEEEEEEEcCCChHhhHHHHHHHHHHHHH
Confidence 35899999999999864 34678999999998764322 2466666666654
No 41
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=97.89 E-value=7.7e-05 Score=76.77 Aligned_cols=115 Identities=11% Similarity=0.150 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccC----C---C-CCcceeEeccCCCceeeccChHHHHhhhccC-----
Q 013865 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS----S---E-GGSAVFRLDYKGQSACLAQSPQLHKQMSICG----- 312 (435)
Q Consensus 246 ~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~----~---e-gga~~F~v~~~~~~~~L~~Spql~lq~~i~~----- 312 (435)
.-.+++.+|.+++++.+...||.||.||.|.... + + -+.+.|.+. +.++||+-..+-..-.++..
T Consensus 164 ~ga~l~~aL~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sG~~~~f~~emy~~~--d~~l~L~Pt~e~~~~~~~~~~~~s~ 241 (421)
T 1ses_A 164 DLALYELALLRFAMDFMARRGFLPMTLPSYAREKAFLGTGHFPAYRDQVWAIA--ETDLYLTGTAEVVLNALHSGEILPY 241 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHHHTCTTTTGGGSCBBT--TSSEEECSSTHHHHHHTTTTCEEEG
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEeCCceecHHHHHhcCCCCcCchhcEEEc--CCeEEEeecCcHHHHHHhcccccCc
Confidence 4566788999999999999999999999998543 1 0 122355553 56889987665444333222
Q ss_pred -CC-ceeEEEecceecCCC------CCCccccccccceeeeeccccHHHHHHHHHHHH
Q 013865 313 -DF-GRVFETGPVFRAEDS------YTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLF 362 (435)
Q Consensus 313 -g~-~rVfeIgp~FR~E~s------~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li 362 (435)
.+ -|+|++|+|||+|-+ .+.--.-||+|+|++.....+.++..+..++++
T Consensus 242 ~~LPlr~~~~g~~FR~E~g~~Gr~~~GL~R~rqF~q~E~~~f~~p~~e~s~~~~~e~~ 299 (421)
T 1ses_A 242 EALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDRAFQELL 299 (421)
T ss_dssp GGCSEEEEEEEEEECCCCSCCCSCCCTTSSCSEEEEEEEEEEECSCHHHHHHHHHHHH
T ss_pred hhCCEEEEecCCeecCCccccCcCCCCCeeeeeeeeeeEEEEeCCCHHHHHHHHHHHH
Confidence 12 399999999999952 121134699999987654321244444444444
No 42
>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A*
Probab=97.88 E-value=3.8e-05 Score=79.93 Aligned_cols=115 Identities=17% Similarity=0.165 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHHHHHh-hcCCeEEeeCceeeccC----C---CC-CcceeEecc---CCCceeeccChH-----HHHhh
Q 013865 246 GIFRIQSQVGNIFRQFL-LSENFVEIHTPKLIAGS----S---EG-GSAVFRLDY---KGQSACLAQSPQ-----LHKQM 308 (435)
Q Consensus 246 ~i~~~rs~i~~~~r~fl-~~~gF~EV~TP~l~~~~----~---eg-ga~~F~v~~---~~~~~~L~~Spq-----l~lq~ 308 (435)
.-.+++..|.+.+|+.+ .+.||.||.||+|.... + +. +.+.|.+.- -+..++|+-..+ +|.+.
T Consensus 62 ~g~~l~~~l~~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sGh~~~~~~emy~~~d~~~~~~~l~LrPt~~~~~~~~~~~~ 141 (460)
T 3uh0_A 62 NGAKIFNKLIEFMKLQQKFKFGFNEVVTPLIYKKTLWEKSGHWENYADDMFKVETTDEEKEEYGLKPMNCPGHCLIFGKK 141 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCCEECCCCSEEEHHHHHHHTCTTTSGGGSCEECC------CEEECSCSHHHHHHHHTTS
T ss_pred cHHHHHHHHHHHHHHHHHHhcCCEEEECCeeccHHHHHhcCCccccccceEEEecCCCCCceEEEcccCcHHHHHHHHhc
Confidence 45778889999999999 99999999999997543 1 11 223566543 257889985542 33332
Q ss_pred hcc-CCC-ceeEEEecceecCCCC---CCccccccccceeeeeccccHHHHHHHHHHHH
Q 013865 309 SIC-GDF-GRVFETGPVFRAEDSY---THRHLCEFTGLDVEMEIKKHYSEVMDIVDRLF 362 (435)
Q Consensus 309 ~i~-~g~-~rVfeIgp~FR~E~s~---t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li 362 (435)
... ..+ =|+|++|+|||+|.+. +..-.-||+|.|.+. |.. -+++.+.+++++
T Consensus 142 ~~s~r~LPlrl~~~g~~fR~E~~~~~~GL~R~ReF~q~d~~~-f~~-~e~~~~e~~~~i 198 (460)
T 3uh0_A 142 DRSYNELPLRFSDFSPLHRNEASGALSGLTRLRKFHQDDGHI-FCT-PSQVKSEIFNSL 198 (460)
T ss_dssp CCBGGGCSEEEEECCEEECCCCTTTCBTTTBCSEEEEEEEEE-EEC-GGGHHHHHHHHH
T ss_pred cccccccCeEEEEecCeeeCCCCCCCCCceeeeeEEEeeEEE-EcC-HHHHHHHHHHHH
Confidence 221 122 3899999999999863 222346999999996 543 344444444333
No 43
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens}
Probab=97.88 E-value=5.1e-05 Score=79.82 Aligned_cols=100 Identities=11% Similarity=0.076 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCC-------CC-CcceeEecc---------CCCceeeccChHHHHhh
Q 013865 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS-------EG-GSAVFRLDY---------KGQSACLAQSPQLHKQM 308 (435)
Q Consensus 246 ~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~-------eg-ga~~F~v~~---------~~~~~~L~~Spql~lq~ 308 (435)
.-.+++.+|++++++.+.++||.||.||.|..... ++ +.+.|.+.- -+.++||.-..+.-+=.
T Consensus 199 ~GarL~raL~~f~~d~~~~~Gy~EV~~P~lv~~el~~~sG~l~~f~eemy~v~~~g~~~~~~~~~~~l~L~PTaE~~l~~ 278 (522)
T 3vbb_A 199 VLVFLEQALIQYALRTLGSRGYIPIYTPFFMRKEVMQEVAQLSQFDEELYKVIGKGSEKSDDNSYDEKYLIATSEQPIAA 278 (522)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHHHSCCC-CCSCCCEEC------------CCEEECSSTHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEECCcccchHHHhhcCCcccCcccceEeecCCccccccccCcceeEcccCcHHHHH
Confidence 56788999999999999999999999999975431 11 234676643 24679999666554322
Q ss_pred hccC------CC-ceeEEEecceecCCCC------CCccccccccceeee
Q 013865 309 SICG------DF-GRVFETGPVFRAEDSY------THRHLCEFTGLDVEM 345 (435)
Q Consensus 309 ~i~~------g~-~rVfeIgp~FR~E~s~------t~rHl~EFt~lE~e~ 345 (435)
+... .+ =|+|++|+|||+|-+. +.--.-||+|.|.+.
T Consensus 279 l~~~ei~s~~dLPlr~~~~s~cFR~Eags~GrdtrGL~RvhQF~kvE~~~ 328 (522)
T 3vbb_A 279 LHRDEWLRPEDLPIKYAGLSTCFRQEVGSHGRDTRGIFRVHQFEKIEQFV 328 (522)
T ss_dssp TSTTCEECTTTCCEEEEEEEEEECSCCCC----CCCSSSCSEEEEEEEEE
T ss_pred HHhhhecccccCCeeEEEecccccCCCCcCCccCCCcceeeeeEEEEEEE
Confidence 2111 22 3799999999999742 112335999999974
No 44
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=97.88 E-value=3.2e-05 Score=80.38 Aligned_cols=114 Identities=11% Similarity=0.162 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCC---CCCc-----ceeEeccCCCceeeccChHHH-----Hhhhcc-
Q 013865 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS---EGGS-----AVFRLDYKGQSACLAQSPQLH-----KQMSIC- 311 (435)
Q Consensus 246 ~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~---egga-----~~F~v~~~~~~~~L~~Spql~-----lq~~i~- 311 (435)
.-.+++..|.+++++.+...||.||.||.|..... .|.. +.|.+. +.++||+-..+.. ....+.
T Consensus 191 ~ga~l~~aL~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sG~~~~f~~emy~~~--d~~l~LrPt~e~~~~~~~~~~~~s~ 268 (455)
T 2dq0_A 191 EIVILDLALIRFALDRLIEKGFTPVIPPYMVRRFVEEGSTSFEDFEDVIYKVE--DEDLYLIPTAEHPLAGMHANEILDG 268 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHHTTSCTTHHHHTCCBBT--TSSCEECSSTHHHHHHTTTTEEEET
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEeCCcccCHHHHHhcCCCCCChHhhCeec--CCcEEEcCcCcHHHHHHHHhCccCc
Confidence 45667789999999999999999999999986431 1221 245443 5788998665433 332221
Q ss_pred CCC-ceeEEEecceecCCCCC------CccccccccceeeeeccccHHHHHHHHHHHHH
Q 013865 312 GDF-GRVFETGPVFRAEDSYT------HRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFV 363 (435)
Q Consensus 312 ~g~-~rVfeIgp~FR~E~s~t------~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~ 363 (435)
..+ -|+|++|+|||+|.+.. ..-.-||+|.|++ .|.. -++..+..++++.
T Consensus 269 ~~LPlr~~~~g~~FR~E~~~~G~~~~GL~R~rqF~kvE~~-~f~~-pe~s~~~~~e~l~ 325 (455)
T 2dq0_A 269 KDLPLLYVGVSPCFRKEAGTAGKDTKGIFRVHQFHKVEQF-VYSR-PEESWEWHEKIIR 325 (455)
T ss_dssp TTCSEEEEEEEEEECCCTTCSSCSCCSSSSCSEEEEEEEE-EEEC-TTTHHHHHHHHHH
T ss_pred hhCCEEEEEecCcccCCCCccccccCCceeeeeeEeeeEE-EecC-HHHHHHHHHHHHH
Confidence 123 39999999999998521 1133599999998 4554 3565555555554
No 45
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=97.83 E-value=3.9e-05 Score=83.02 Aligned_cols=102 Identities=20% Similarity=0.223 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCC---CC-----CcceeEeccCCCceeeccChH-----HHHhhhccC
Q 013865 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS---EG-----GSAVFRLDYKGQSACLAQSPQ-----LHKQMSICG 312 (435)
Q Consensus 246 ~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~---eg-----ga~~F~v~~~~~~~~L~~Spq-----l~lq~~i~~ 312 (435)
.-.+++..|.+.+|+.+...||.||.||+|..... -| +-+.|.++--++.++|+--.. +|.+.....
T Consensus 269 ~g~~l~~~l~~~~r~~~~~~Gy~ev~tP~l~~~~l~~~sGh~~~~~~~my~~d~~~~~~~LrP~~~~~~~~~~~~~~~sy 348 (642)
T 1qf6_A 269 DGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTSSENREYCIKPMNCPGHVQIFNQGLKSY 348 (642)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSEEETHHHHHHSHHHHHGGGCEEEEETTEEEEECSSSHHHHHHHHTTSCEEG
T ss_pred cHHHHHHHHHHHHHHHHHHcCCEEEECCcCccHHHHhhcCccccccccceeeecCCceEEecCCCCHHHHHHHHhhhhhc
Confidence 56778899999999999999999999999986431 02 234676554567888885442 344322211
Q ss_pred -CC-ceeEEEecceecCCCCCCc----cccccccceeeeeccc
Q 013865 313 -DF-GRVFETGPVFRAEDSYTHR----HLCEFTGLDVEMEIKK 349 (435)
Q Consensus 313 -g~-~rVfeIgp~FR~E~s~t~r----Hl~EFt~lE~e~a~~~ 349 (435)
.+ =|+|+||+|||+|.+ +.+ -.-||||.|++. |.+
T Consensus 349 r~LPlr~~~~g~~fR~E~~-g~~~GL~R~ReF~q~d~~~-f~~ 389 (642)
T 1qf6_A 349 RDLPLRMAEFGSCHRNEPS-GSLHGLMRVRGFTQDDAHI-FCT 389 (642)
T ss_dssp GGCSEEEEEEEEEECCCCG-GGCBTTTBCSEEEEEEEEE-EEC
T ss_pred cccCeEEEEeccEEecCCC-ccccCCceeeeEEEccEEE-EcC
Confidence 22 399999999999986 222 356999999997 543
No 46
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A*
Probab=97.81 E-value=4.3e-05 Score=80.36 Aligned_cols=115 Identities=20% Similarity=0.208 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccC---CCCC------cceeEeccC-----CCceeeccChH-----HHH
Q 013865 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS---SEGG------SAVFRLDYK-----GQSACLAQSPQ-----LHK 306 (435)
Q Consensus 246 ~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~---~egg------a~~F~v~~~-----~~~~~L~~Spq-----l~l 306 (435)
.-.+++..|.+.+|+.|.. ||.||.||+|.... .+.| -+.|.+..- +.+++|+-..+ +|.
T Consensus 69 ~g~~l~~~i~~~~~~~~~~-G~~ei~tP~l~~~~l~~~~sG~~~~f~~emy~~~d~g~~~~~~~l~LrPt~e~~i~~~~~ 147 (501)
T 1nj1_A 69 HGFMIRKNTLKILRRILDR-DHEEVLFPLLVPEDELAKEAIHVKGFEDEVYWVTHGGLSKLQRKLALRPTSETVMYPMFA 147 (501)
T ss_dssp HHHHHHHHHHHHHHHHHTT-TCEECCCCSEEEHHHHTTSHHHHHHTTTTCCEEEEETTEEEEEEEEECSSSHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHc-CCEEEecCcEecHHHHhcccCCcccCCcceEEEecCCCcccCCeeEEccCCCHHHHHHHH
Confidence 4456778899999999999 99999999998654 1111 235666442 56889985543 445
Q ss_pred hhhccC-CC-ceeEEEecceecCCCCCCc--cccccc-cceeeeeccccHHHHHHHHHHHH
Q 013865 307 QMSICG-DF-GRVFETGPVFRAEDSYTHR--HLCEFT-GLDVEMEIKKHYSEVMDIVDRLF 362 (435)
Q Consensus 307 q~~i~~-g~-~rVfeIgp~FR~E~s~t~r--Hl~EFt-~lE~e~a~~~~~~d~m~~~e~li 362 (435)
+..... .+ -|+|+||+|||+|.+.+.- =.-||+ |+|.+..+.+ .+++...+++++
T Consensus 148 ~~~~s~~~LPlr~~q~g~~fR~E~~~~rGl~R~REF~~q~e~~~~~~~-~e~a~~e~~~~l 207 (501)
T 1nj1_A 148 LWVRSHTDLPMRFYQVVNTFRYETKHTRPLIRVREITTFKEAHTIHAT-ASEAEEQVERAV 207 (501)
T ss_dssp HHCCBTTTCCEEEEEEEEEECCCCSCCBTTTBCSEEEEEEEEEEEESS-HHHHHHHHHHHH
T ss_pred hhhcccccCCEEEEeecCEeeCCCCCCCCCceeEEEeeeeeEEEEECC-HHHHHHHHHHHH
Confidence 433322 33 3999999999999852211 235999 9999988875 566555554444
No 47
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=97.80 E-value=3.5e-05 Score=80.81 Aligned_cols=50 Identities=22% Similarity=0.397 Sum_probs=42.1
Q ss_pred ceeEEEecceecCCCCCCccccccccceeeeecc-ccHHHHHHHHHHHHHHH
Q 013865 315 GRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIK-KHYSEVMDIVDRLFVTI 365 (435)
Q Consensus 315 ~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~-~~~~d~m~~~e~li~~i 365 (435)
-|+|+||+|||+|.. +.+|+|+|+|+|..+... -++.|++.+++.++..+
T Consensus 348 iriFeiGrVFR~d~~-DatHlpeFhQlegl~~~~~v~f~dLKg~Le~~l~~l 398 (508)
T 3l4g_A 348 VKYFSIDRVFRNETL-DATHLAEFHQIEGVVADHGLTLGHLMGVLREFFTKL 398 (508)
T ss_dssp EEEEEEEEEECCSCC-CSSSCSEEEEEEEEEEEESCCHHHHHHHHHHHHHTT
T ss_pred ceEEEEccEEecCCC-CCCcCCeEEEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 489999999999984 789999999999987642 14889999999988775
No 48
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A
Probab=97.79 E-value=0.00014 Score=77.02 Aligned_cols=118 Identities=11% Similarity=0.140 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCC--------CCCcceeEeccCCCceeeccChHHHHhhhccC----
Q 013865 245 QGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS--------EGGSAVFRLDYKGQSACLAQSPQLHKQMSICG---- 312 (435)
Q Consensus 245 ~~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~--------egga~~F~v~~~~~~~~L~~Spql~lq~~i~~---- 312 (435)
..-.+++.+|++++++.+.++||.||.||.|..... .-+.+.|.+. +.++||.-..+..+=.+...
T Consensus 272 p~Ga~l~~aL~~~~~~~~~~~Gy~ev~~P~lv~~~l~~~sG~~~~f~e~mf~~~--~~~~~L~PT~E~~~~~l~~~~i~s 349 (536)
T 3err_A 272 GDLALYELALLRFAMDFMARRGFLPMTLPSYAREKAFLGTGHFPAYRDQVWAIA--ETDLYLTGTAEVVLNALHSGEILP 349 (536)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHHHTCTTTTGGGCCEET--TTTEEECSSTHHHHHHHTTTCEEE
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCEEEeccccccHHHHHhcCCcccChhhceEec--CCCEEEccCCcHHHHHHHhccccc
Confidence 356788999999999999999999999999985431 1134467764 36889986665433222211
Q ss_pred --CC-ceeEEEecceecCCCC------CCccccccccceeeeeccccHHHHHHHHHHHHHH
Q 013865 313 --DF-GRVFETGPVFRAEDSY------THRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVT 364 (435)
Q Consensus 313 --g~-~rVfeIgp~FR~E~s~------t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~ 364 (435)
.+ =|+|++|+|||+|-+. +.--.-||+|.|.+.--...+++..+..++|+..
T Consensus 350 ~~~LPlr~~~~~~~fR~E~gs~Gr~~~GL~RvrqF~k~e~~~f~~pe~e~s~~~~e~~~~~ 410 (536)
T 3err_A 350 YEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDRAFQELLEN 410 (536)
T ss_dssp GGGCSEEEEEEEEEECCCTTCTTSSCSTTSSCSEEEEEEEEEEECSCHHHHHHHHHHHHHH
T ss_pred HhhCCeeEEEecccccCCccccCCCCCCceeeeeeEEEEEEEEECCchHHHHHHHHHHHHH
Confidence 12 3899999999999631 1224559999999853332223666666666543
No 49
>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A
Probab=97.74 E-value=6.4e-05 Score=78.34 Aligned_cols=102 Identities=20% Similarity=0.239 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCC---CC-----CcceeEeccCCCceeeccChH-----HHHhhhcc-
Q 013865 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS---EG-----GSAVFRLDYKGQSACLAQSPQ-----LHKQMSIC- 311 (435)
Q Consensus 246 ~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~---eg-----ga~~F~v~~~~~~~~L~~Spq-----l~lq~~i~- 311 (435)
.-.+++..|.+.+|+.|...||.||.||+|..... .| +.+.|.++--|+.++||--.. +|.+.+-.
T Consensus 47 ~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~sg~~~~~~~emy~~d~~~~~l~LRP~~t~~i~~~~~~~~~s~ 126 (471)
T 3a32_A 47 GGGPIRYALAEVLAKFHARRGYYVVETPIIASTELFKVSGHIEFYRNNMYLFDIEGHEFAVKPMNCPYHILLFLNEVAKH 126 (471)
T ss_dssp THHHHHHHHHHHHHHHHHHTTCEECCCCSEEETHHHHHTCCCTTGGGGSEEEEETTEEEEECSCSHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHcCCEEEECCeeeehHHhhhccCccccccceEEEecCCcEEEEccccHHHHHHHHHhhhhhc
Confidence 34677889999999999999999999999986431 12 234677766678899984432 23332211
Q ss_pred C---CC-ceeEEEecceecCCCC---CCccccccccceeeeec
Q 013865 312 G---DF-GRVFETGPVFRAEDSY---THRHLCEFTGLDVEMEI 347 (435)
Q Consensus 312 ~---g~-~rVfeIgp~FR~E~s~---t~rHl~EFt~lE~e~a~ 347 (435)
. .+ -|.|+||+|||+|.+. +.--.-||+|+|+|.-.
T Consensus 127 r~~~~lP~rl~~~g~vfR~E~~~~~~Gl~R~REF~Q~~~e~f~ 169 (471)
T 3a32_A 127 RSKLPLPFKVFEFGRVHRYEPSGSIYGLLRVRGFTQDDAHIIV 169 (471)
T ss_dssp GGGSCSSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEEE
T ss_pred cccccCCeEEeeccceeccCCCcccccceeEEEEEECCeEEEc
Confidence 1 33 4999999999999752 11135699999999764
No 50
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=97.71 E-value=9.9e-05 Score=77.04 Aligned_cols=117 Identities=10% Similarity=0.182 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCC-C--C-----CcceeEeccCCCceeeccChHHHHhhhccC----
Q 013865 245 QGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS-E--G-----GSAVFRLDYKGQSACLAQSPQLHKQMSICG---- 312 (435)
Q Consensus 245 ~~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~-e--g-----ga~~F~v~~~~~~~~L~~Spql~lq~~i~~---- 312 (435)
..-.+++.+|++++++.+.++||.||.||.|..... + | +.+.|.+.--+.++||.-..+..+=.+...
T Consensus 205 p~GarL~~aL~~f~~d~~~~~Gy~eV~~P~lv~~~l~~~sG~~~~f~e~mf~v~~~~~~~~L~PTaE~~l~~l~~~~i~s 284 (484)
T 3lss_A 205 GGLVQLQVALVSYSLDFLVKRGYTPFYPPFFLNRDVMGEVAQLSQFDEELYQVSGDGDKKYLIATSEMPIAAYHRGRWFT 284 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCEEEECCSEEEHHHHHHHSCHHHHHHTCCEEESSSSCEEECSSTHHHHHHHTTTCEES
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCEEEecCccccHHHHHhcCCcccccccceEeecCCcceEEeccCcHHHHHHHhccccc
Confidence 457889999999999999999999999999986532 1 1 124576644467899987765544222111
Q ss_pred --CC-ceeEEEecceecCC-CC-----CCccccccccceeeeeccccHHH--HHHHHHHHHH
Q 013865 313 --DF-GRVFETGPVFRAED-SY-----THRHLCEFTGLDVEMEIKKHYSE--VMDIVDRLFV 363 (435)
Q Consensus 313 --g~-~rVfeIgp~FR~E~-s~-----t~rHl~EFt~lE~e~a~~~~~~d--~m~~~e~li~ 363 (435)
.+ =|+|++|+|||+|- |. +.--.-||+|.|.+. |.. -++ ..+..++|+.
T Consensus 285 y~dLPlr~~~~s~cFR~Eags~Grdt~GL~RvrqF~kvE~~~-f~~-pe~~~s~~e~e~~~~ 344 (484)
T 3lss_A 285 ELKEPLKYAGMSTCFRKEAGAHGRDTLGIFRVHQFDKIEQFV-VCS-PRQEESWRHLEDMIT 344 (484)
T ss_dssp CCSSCEEEEEEEEEECCCTTCSSSCCSTTSSCSEEEEEEEEE-EEC-SSTTHHHHHHHHHHH
T ss_pred hhhCCeeEEeecCccCCCCCcCCcccCCcceeeeEEEEEEEE-EeC-cchHHHHHHHHHHHH
Confidence 12 38999999999996 31 112234999999974 332 233 5555555544
No 51
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=97.70 E-value=0.00015 Score=74.80 Aligned_cols=118 Identities=14% Similarity=0.205 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccC--CC-CCc---ceeEe-ccCCCceeecc--ChHHHHhhhccC--CC
Q 013865 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS--SE-GGS---AVFRL-DYKGQSACLAQ--SPQLHKQMSICG--DF 314 (435)
Q Consensus 246 ~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~--~e-gga---~~F~v-~~~~~~~~L~~--Spql~lq~~i~~--g~ 314 (435)
.-.+++..|.+.+|+.|...||.||.||+|.... .. .|. +.|.+ +--|+.+.||- .+.+-.- +... .-
T Consensus 26 ~~~~~~~~i~~~~~~~~~~~Gy~eI~tP~le~~el~~~~~g~~~~~~y~f~D~~g~~l~LRPd~T~~~aR~-~~~~~~~p 104 (464)
T 4g84_A 26 RQMAVREKVFDVIIRCFKRHGAEVIDTPVFELKETLMGKYGEDSKLIYDLKDQGGELLSLRYDLTVPFARY-LAMNKLTN 104 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTTSCC----CCCBBCCCSSCCEEECSCSHHHHHHH-HHHTTCSC
T ss_pred HHHHHHHHHHHHHHHHHHHCCCeEEECcccCcHHHhccccCcCcceeEEEECCCCCEEEeCCcCcHHHHHH-HHhcCCCC
Confidence 4457788899999999999999999999996432 11 121 24543 33567788873 2222211 1111 12
Q ss_pred ceeEEEecceecCCCC-CCccccccccceeeeecc-ccH---HHHHHHHHHHHHH
Q 013865 315 GRVFETGPVFRAEDSY-THRHLCEFTGLDVEMEIK-KHY---SEVMDIVDRLFVT 364 (435)
Q Consensus 315 ~rVfeIgp~FR~E~s~-t~rHl~EFt~lE~e~a~~-~~~---~d~m~~~e~li~~ 364 (435)
-|.|+||++||.|... ..-+.-||+|+++|.-.. +.. -++|.++-+++..
T Consensus 105 ~k~~y~g~vfR~erp~~~~gR~Ref~Q~g~ei~G~~~~~~aDaEvi~l~~~~l~~ 159 (464)
T 4g84_A 105 IKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAGNFDPMIPDAECLKIMCEILSS 159 (464)
T ss_dssp EEEEEEEEEECCCC------CCSEEEEEEEEEESCCSTTHHHHHHHHHHHHHHHH
T ss_pred ceeEEEecceeccCCccccCccceeeecceeccCCccchhhHHHHHHHHHHHHHH
Confidence 4889999999999743 233567999999998653 211 2566666665553
No 52
>3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, RS, translation, ATP-binding, nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803}
Probab=97.67 E-value=8.2e-05 Score=78.45 Aligned_cols=116 Identities=13% Similarity=0.160 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCC---CCC------cceeEeccC-----CCceeeccChH-----HHH
Q 013865 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS---EGG------SAVFRLDYK-----GQSACLAQSPQ-----LHK 306 (435)
Q Consensus 246 ~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~---egg------a~~F~v~~~-----~~~~~L~~Spq-----l~l 306 (435)
.-++++..|.+.+|+.|...||.||.||+|..... ++| .+.|.+.-- +.+++|+-..+ +|.
T Consensus 53 ~G~~i~~~L~~~~~~~~~~~Gy~eV~tP~l~~~el~~k~sgh~~~f~~emy~v~d~g~~~~~~~l~LrPt~e~~i~~~~~ 132 (518)
T 3ial_A 53 YGFFMENAIMRLCEEEYAKVGISQILFPTVIPESFLKKESDHIKGFEAECFWVEKGGLQPLEERLALRPTSETAIYSMFS 132 (518)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTSSHHHHHHHGGGCEEEEEETTEEEEEEEEECSSSHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHcCCEEEEcccccCHHHHHhhcCCcccccccEEEEecCCCcccCcceeECCCCcHHHHHHHH
Confidence 55678889999999999999999999999986541 222 236666432 46899985553 444
Q ss_pred hhhcc-CCC-ceeEEEecceecCCCCC--CccccccccceeeeeccccHHHHHHHHHHHH
Q 013865 307 QMSIC-GDF-GRVFETGPVFRAEDSYT--HRHLCEFTGLDVEMEIKKHYSEVMDIVDRLF 362 (435)
Q Consensus 307 q~~i~-~g~-~rVfeIgp~FR~E~s~t--~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li 362 (435)
..... ..+ =|+|++|+|||+|-+.+ ..-.-||+|.|.+....+ .+++...++.|+
T Consensus 133 ~~i~SyrdLPlrl~q~~~~fR~E~~~~~GL~R~REF~q~e~h~f~~~-~e~a~~e~~~~l 191 (518)
T 3ial_A 133 KWVRSYKDLPLKIHQTCTIFRHETKNTKPLIRVREIHWNEAHCCHAT-AEDAVSQLSDYW 191 (518)
T ss_dssp HHCCBGGGCCEEEEEEEEEECTTCCSCBTTTBCSEEEEEEEEEEESS-HHHHHHHHHHHH
T ss_pred hhhcccccCCeEEEEEeceecCCCCCCCCCceeeEEEEeeEEEEECC-HHHHHHHHHHHH
Confidence 43322 133 38999999999994322 113469999999998665 677777666665
No 53
>1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP: d.104.1.1 PDB: 1usy_C*
Probab=97.67 E-value=0.0001 Score=71.44 Aligned_cols=105 Identities=18% Similarity=0.201 Sum_probs=69.0
Q ss_pred HHHHHH--HHhhcCCeEEeeCceeeccCCCCCcceeEeccCCCceeec--cChHHHHhhhccC--CCceeEEEecceecC
Q 013865 254 VGNIFR--QFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLA--QSPQLHKQMSICG--DFGRVFETGPVFRAE 327 (435)
Q Consensus 254 i~~~~r--~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~~~~~~~L~--~Spql~lq~~i~~--g~~rVfeIgp~FR~E 327 (435)
|.+.+| +.|...||.||.||++-....=.. +.| ++--|+.+.|| ..|.+....+--. .--|.|++|+|||.|
T Consensus 6 le~~~r~~~~~~~~Gy~eI~tP~le~~~l~~~-d~f-~d~~g~~l~LRpd~T~~~a~~~~~~~~~~p~R~~y~g~vfR~e 83 (275)
T 1usy_A 6 FEKVFSFYSKATKKGFSPFFVPALEKAEEPAG-NFF-LDRKGNLFSIREDFTKTVLNHRKRYSPDSQIKVWYADFVYRYS 83 (275)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEEECSSCCS-SCE-EETTSCEEEECCCHHHHHHHHHTTCTTCCCEEEECCEEEEEEE
T ss_pred HHHHHHHHHHHHHCCCEEecCccccchhhhcc-ccc-CCCCCCEEEeCCcChHHHHHHHhhcCCCCceEEEEeceEEecC
Confidence 344555 999999999999999976542222 244 34467778887 3344442222111 235999999999999
Q ss_pred CCCCCccccccccceeeeeccccH---HHHHHHHHHHHHH
Q 013865 328 DSYTHRHLCEFTGLDVEMEIKKHY---SEVMDIVDRLFVT 364 (435)
Q Consensus 328 ~s~t~rHl~EFt~lE~e~a~~~~~---~d~m~~~e~li~~ 364 (435)
.+.. -||+|+++|+-..++. -+++.++-+++..
T Consensus 84 ~~~~----Ref~Q~g~ei~g~~~~~~DaEvi~l~~~~l~~ 119 (275)
T 1usy_A 84 GSDL----VAEYQLGLEKVPRNSLDDSLEVLEIIVESASE 119 (275)
T ss_dssp TTEE----EEEEEEEEEEESCCSHHHHHHHHHHHHHHHHH
T ss_pred CCCC----CeeeEeCEEEecCCCchhHHHHHHHHHHHHHH
Confidence 8633 7999999998765433 3455555555554
No 54
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=97.66 E-value=0.00012 Score=76.47 Aligned_cols=116 Identities=13% Similarity=0.151 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCC---CC-----CcceeEeccCCCceeeccChHHHHhhhccC-----
Q 013865 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS---EG-----GSAVFRLDYKGQSACLAQSPQLHKQMSICG----- 312 (435)
Q Consensus 246 ~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~---eg-----ga~~F~v~~~~~~~~L~~Spql~lq~~i~~----- 312 (435)
.-.+++.+|++++++.+.++||.||.||.|..... .| +.+.|.+.--+.++||.-..+.-+=.++..
T Consensus 183 ~GarL~~aL~~~~~d~~~~~Gy~eV~~P~lv~~~l~~~sG~l~~f~eemf~v~~~~~~~~LipTaE~pl~~l~~~ei~~S 262 (485)
T 3qne_A 183 YGVFLNQALINYGLSFLSSKGYVPLQAPVMMNKEVMAKTAQLSQFDEELYKVIDGEDEKYLIATSEQPISAYHAGEWFES 262 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCEEEECCSEEEHHHHHHHSCHHHHTTTCCEEEETTEEEEECSSTHHHHHHHTTTCEESS
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHhhcCCccccccceEEEeCCCCeEEEeccccHHHHHHHhcccccc
Confidence 56788999999999999999999999999986541 11 234666643356789876655443333222
Q ss_pred ---CC-ceeEEEecceecCCCC------CCccccccccceeeeeccccHHHHHHHHHHHHH
Q 013865 313 ---DF-GRVFETGPVFRAEDSY------THRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFV 363 (435)
Q Consensus 313 ---g~-~rVfeIgp~FR~E~s~------t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~ 363 (435)
.+ =|+|++++|||+|-+. +.--.-||+|.|.+. |.. -++..+..++|+.
T Consensus 263 ~y~dLPlr~~~~s~cfR~Eag~~Grdt~GL~RvhqF~kvE~~~-f~~-pe~s~~e~e~ml~ 321 (485)
T 3qne_A 263 PAEQLPVRYAGYSSCFRREAGSHGKDAWGIFRVHAFEKIEQFV-LTE-PEKSWEEFDRMIG 321 (485)
T ss_dssp HHHHCCEEEEEEEEEECSCCC-----CCSSSSCSEEEEEEEEE-EEC-GGGHHHHHHHHHH
T ss_pred chhcCCeeEEEecccccCCCCCCCccCCCceeeeeeeeeeEEE-EeC-HHHHHHHHHHHHH
Confidence 12 2799999999999642 212334999999986 443 3555555555554
No 55
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=97.66 E-value=0.00019 Score=75.29 Aligned_cols=119 Identities=15% Similarity=0.237 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCC--------CCCc-ceeEeccC-CCceeeccChHHHH-----hhhc
Q 013865 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS--------EGGS-AVFRLDYK-GQSACLAQSPQLHK-----QMSI 310 (435)
Q Consensus 246 ~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~--------egga-~~F~v~~~-~~~~~L~~Spql~l-----q~~i 310 (435)
.-.++..+|.+++++.+.+.||.||.||.|..... .-+. +.|.+.-- +.++||+-..+..+ ...+
T Consensus 217 ~GarL~~aL~~~~~d~~~~~Gy~eV~~P~lv~~~l~~~sG~~~~f~e~emf~v~~~~~~~l~L~PTaE~~~~~l~~~~i~ 296 (501)
T 1wle_A 217 AGALLQHGLVNFTLNKLIHRGFTPMTVPDLLRGVVFEGCGMTPNAKPSQIYNIDPSRFEDLNLAGTAEVGLAGYFMDHSV 296 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHHHHTCCSSSSSCSSCBBCTTTSSSCEECSSHHHHHHHHHTTEEE
T ss_pred hHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHHhhcCCCccCccccEEEecCCCCeEEECCcCcHHHHHHHhhccC
Confidence 46778888999999999999999999999986431 1123 56666432 46889986665433 2221
Q ss_pred c-CCC-ceeEEEecceecCCC-----CCCccccccccceeeeeccccHHHHHHHHHHHHHH
Q 013865 311 C-GDF-GRVFETGPVFRAEDS-----YTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVT 364 (435)
Q Consensus 311 ~-~g~-~rVfeIgp~FR~E~s-----~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~ 364 (435)
. ..+ =|+|++|+|||+|-+ .+.--.-||+|.|.+.--....++..+..++|+..
T Consensus 297 s~~~LPlrl~~~s~~FR~Ea~~G~d~~GL~RvhqF~kvE~~~f~~pe~e~s~~~~e~~l~~ 357 (501)
T 1wle_A 297 AFRDLPIRMVCSSTCYRAETDTGKEPWGLYRVHHFTKVEMFGVTGPGLEQSSELLEEFLSL 357 (501)
T ss_dssp EGGGCSEEEEEEEEEECCCCSCC--CCSSSSCSEEEEEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred CcccCCeeEEeccCcccCCCCCCCCCcCceeeeeeeeeeEEEEeCCcHHHHHHHHHHHHHH
Confidence 1 112 389999999999965 11122358999999875443114666666666543
No 56
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens}
Probab=97.64 E-value=0.00015 Score=76.39 Aligned_cols=118 Identities=14% Similarity=0.217 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccC---CCCCc---ceeEe-ccCCCceeecc--ChHHHHhhhccCC--C
Q 013865 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS---SEGGS---AVFRL-DYKGQSACLAQ--SPQLHKQMSICGD--F 314 (435)
Q Consensus 246 ~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~---~egga---~~F~v-~~~~~~~~L~~--Spql~lq~~i~~g--~ 314 (435)
.-.+++..|.+.+|+.|...||.||.||+|.... ...|. ..|.+ +--|+.+.||- .+.+-.- +.... -
T Consensus 79 ~~~~~~~~ie~~i~~~~~~~Gy~eI~tP~lE~~el~~~~~ge~~~~my~f~D~~g~~l~LRPd~T~~~aR~-~~~~~~~p 157 (517)
T 4g85_A 79 RQMAVREKVFDVIIRCFKRHGAEVIDTPVFELKETLMGKYGEDSKLIYDLKDQGGELLSLRYDLTVPFARY-LAMNKLTN 157 (517)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCEECBCCSEEEHHHHHCC------CSCBBCCTTSCCEEECSCSHHHHHHH-HHHTTCSC
T ss_pred HHHHHHHHHHHHHHHHHHHCCCeEEECcccCcHHHhhcccCcCcceeEEEECCCCCEEEeCCcCcHHHHHH-HHhCCCCC
Confidence 4567788999999999999999999999996432 11121 14543 33467777773 2222111 11111 2
Q ss_pred ceeEEEecceecCCCC-CCccccccccceeeeecc-ccH---HHHHHHHHHHHHH
Q 013865 315 GRVFETGPVFRAEDSY-THRHLCEFTGLDVEMEIK-KHY---SEVMDIVDRLFVT 364 (435)
Q Consensus 315 ~rVfeIgp~FR~E~s~-t~rHl~EFt~lE~e~a~~-~~~---~d~m~~~e~li~~ 364 (435)
-|.|+||+|||.|.+. ..-+.-||+|+++|+-.. +.. -+++.++-+++..
T Consensus 158 ~k~yyig~vfR~Erp~~~~GR~ReF~Q~g~ei~G~~~~~~aDaEvi~l~~~~l~~ 212 (517)
T 4g85_A 158 IKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAGNFDPMIPDAECLKIMCEILSS 212 (517)
T ss_dssp EEEEEEEEEECCCC-------CCEEEEEEEEEESCCCTTHHHHHHHHHHHHHHHH
T ss_pred ceeEEEeceEeccCcccccCccceeeeeceeccCCccchHHHHHHHHHHHHHHHh
Confidence 4899999999999752 222568999999998753 211 2566666665553
No 57
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A
Probab=97.59 E-value=0.00017 Score=76.12 Aligned_cols=115 Identities=18% Similarity=0.245 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHHHH-HhhcCCeEEeeCceeeccC----C---CC-CcceeEec-----c--------------------
Q 013865 246 GIFRIQSQVGNIFRQ-FLLSENFVEIHTPKLIAGS----S---EG-GSAVFRLD-----Y-------------------- 291 (435)
Q Consensus 246 ~i~~~rs~i~~~~r~-fl~~~gF~EV~TP~l~~~~----~---eg-ga~~F~v~-----~-------------------- 291 (435)
.-.+++..|.+.+++ ++...||.||.||+|.... + ++ +-+.|.+. .
T Consensus 229 ~G~~L~~~L~~~~~~e~~~~~G~~EV~tP~L~~~el~~~SGh~~~F~demy~v~~~~~Rd~~~~e~~~~~~~~~~~~~~~ 308 (522)
T 2cja_A 229 QSARIFRTFEKIVLEELLEPLGYREMIFPKLVTWEVWMKSGHAKGVYPEIYYVCPPQTRDPDYWEEVADYYKVTHEVPTK 308 (522)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHTCEECBCCSEEEHHHHHHHTGGGTCGGGCCEEECBSCCCHHHHHHHHHHHHHHSSCCHH
T ss_pred hHHHHHHHHHHHHHHHHHHHcCCEEEECCCcccHHHHhhcCCcCccccceeeeecCCccchhhhhhhhhhhhcccccccc
Confidence 456678899999996 6889999999999998643 1 11 12345552 0
Q ss_pred ------CCCceeeccChH-----HHHhhhccC-CCc-eeEE-EecceecCCC--CCCccccccccceeeeeccccHHHHH
Q 013865 292 ------KGQSACLAQSPQ-----LHKQMSICG-DFG-RVFE-TGPVFRAEDS--YTHRHLCEFTGLDVEMEIKKHYSEVM 355 (435)
Q Consensus 292 ------~~~~~~L~~Spq-----l~lq~~i~~-g~~-rVfe-Igp~FR~E~s--~t~rHl~EFt~lE~e~a~~~~~~d~m 355 (435)
-+.++||+-..+ +|....... .+. |+|+ ||+|||+|.. +..--.-||+|.|++. |.+ .++..
T Consensus 309 ~~~~~~~~~~l~LrPt~e~~i~~~f~~~i~s~~~LPlrl~q~ig~~FR~Epgs~~GL~R~REF~q~E~~~-F~~-pe~s~ 386 (522)
T 2cja_A 309 LIKEKIAEPIGGMCYAQCPPFWMYVAGETLPNEEIPVKVFDRSGTSHRYESGGIHGIERVDEFHRIEIVW-IGT-KEEVL 386 (522)
T ss_dssp HHHHHBCCCCEEECSSSSGGGGGGTTTCEECGGGCSEEEEECSSEEECCCSSSCCCTTSCSEEEEEEEEE-EEE-HHHHH
T ss_pred ccccccCCCcEEEccCCcHHHHHHHHhcccccccCCeeEEEEcCceEeCCCCCCCCCeEeEEEEEeeEEE-EeC-hHHHH
Confidence 246788885443 222221211 122 8999 9999999943 2223456999999998 664 67777
Q ss_pred HHHHHHH
Q 013865 356 DIVDRLF 362 (435)
Q Consensus 356 ~~~e~li 362 (435)
+..++++
T Consensus 387 ee~ee~i 393 (522)
T 2cja_A 387 KCAEELH 393 (522)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777777
No 58
>4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens}
Probab=97.59 E-value=0.00015 Score=76.42 Aligned_cols=117 Identities=12% Similarity=0.063 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCC---C-CCc-----ceeEeccC-----CCceeeccChH-----HHH
Q 013865 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS---E-GGS-----AVFRLDYK-----GQSACLAQSPQ-----LHK 306 (435)
Q Consensus 246 ~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~---e-gga-----~~F~v~~~-----~~~~~L~~Spq-----l~l 306 (435)
.-++++..|.+.+++.+.+.||.||.||+|..... + |.. +.|.+..- +.+++|+--.+ +|.
T Consensus 59 ~G~~i~~~L~~~~~~~~~~~Gy~ev~tP~l~~~~l~~k~sGh~~~f~~emy~~~d~g~~~l~e~l~LrPtse~~i~~~~~ 138 (519)
T 4hvc_A 59 WAYAIWEAIKDFFDAEIKKLGVENCYFPMFVSQSALEKEKTHVADFAPEVAWVTRSGKTELAEPIAIRPTSETVMYPAYA 138 (519)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTTSCCSCGGGGGGCEEEEEETTEEEEEEEEECSSSHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHcCCEEEeccccccHHHHhcccCCcccccccceEEeccCCcccccceeeCCCCcHHHHHHHH
Confidence 45677889999999999999999999999975431 1 211 24544321 23588875432 455
Q ss_pred hhhcc-CCC-ceeEEEecceecCCCCCC--ccccccccceeeeeccccHHHHHHHHHHHHH
Q 013865 307 QMSIC-GDF-GRVFETGPVFRAEDSYTH--RHLCEFTGLDVEMEIKKHYSEVMDIVDRLFV 363 (435)
Q Consensus 307 q~~i~-~g~-~rVfeIgp~FR~E~s~t~--rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~ 363 (435)
+.... .++ =|+|++|+|||.|-+.++ .=.-||+|.|.+..|.+ .++....++.++.
T Consensus 139 ~~i~SyrdLPlrl~q~g~~fR~E~~~~~Gl~R~ReF~q~e~h~~~~~-~e~a~~E~~~~l~ 198 (519)
T 4hvc_A 139 KWVQSHRDLPIKLNQWCNVVRWEFKHPQPFLRTREFLWQEGHSAFAT-MEEAAEEVLQILD 198 (519)
T ss_dssp HHCSSGGGCCEEEEEEEEEECCCCSCCBTTTBCSEEEEEEEEEEESS-HHHHHHHHHHHHH
T ss_pred hhccccccCCeEEEEEcCeeeCCCCCCCCCcceeEEEEeeEEEEecC-HHHHHHHHHHHHH
Confidence 53322 123 389999999999943221 12359999999998875 6666666555543
No 59
>3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase, zinc ION, amino acid:[carrier protein] ligase; HET: AMP; 2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A* 3pzc_A*
Probab=97.13 E-value=0.00093 Score=66.64 Aligned_cols=118 Identities=14% Similarity=0.080 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCC-CC-C------cceeEeccC------------------------
Q 013865 245 QGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS-EG-G------SAVFRLDYK------------------------ 292 (435)
Q Consensus 245 ~~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~-eg-g------a~~F~v~~~------------------------ 292 (435)
....+++..|.+++++ ..+.||.||.||.|..... ++ | -+.|.+.-|
T Consensus 61 g~~a~L~~aLe~~~~~-~~~~Gy~ev~~P~lv~~~~~e~SGhl~~F~e~mf~v~~~~~d~~e~~~ll~~~~~~~~~~~~l 139 (346)
T 3mf2_A 61 ALYESIVERLAALITS-HREAGTEALRFPPVMSRAQLEKSGYLKSFPNLLGCVCGLHGTEREINAAVSRFDAGGDWTTSL 139 (346)
T ss_dssp HHHHHHHHHHHHHHHH-TCCTTCEEEECCSEEEHHHHHHTTHHHHCGGGCEEEEEECSCHHHHHHHHHHHHTTSCGGGGE
T ss_pred chHHHHHHHHHHHHHh-hHhcCCeEEECCCccCHHHHHhcCCcccChhhcceeecccccchhhhhhhhhhcccccccccc
Confidence 4667788899999999 9899999999999985431 11 1 124555322
Q ss_pred -CCceeeccCh-----HHHHhh-hccCCCceeEEEecceecCCCCCCccccccccceeeeeccccHHHHHHHHHHHHHHH
Q 013865 293 -GQSACLAQSP-----QLHKQM-SICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTI 365 (435)
Q Consensus 293 -~~~~~L~~Sp-----ql~lq~-~i~~g~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i 365 (435)
+.++||.-.. ++|... .+...=-|+..+|+|||.|.|.+.-.+-+|+|.|+-. |. .-+++.+..++|+..+
T Consensus 140 ~~~d~~LiPtacvpl~~~~~~eg~i~~~plr~~~~g~CFR~EaS~GL~RvhqF~kvE~v~-~~-tpEqs~~e~e~l~~~a 217 (346)
T 3mf2_A 140 SPADLVLSPAACYPVYPIAASRGPLPKGGLRFDVAADCFRREPSKHLDRLQSFRMREYVC-IG-TPDDVSDFRERWMVRA 217 (346)
T ss_dssp EEEEEEECSSSSTTHHHHHHTTCSCCTTCEEEEEEEEEECCCCCSSTTSCSEEEEEEEEE-EE-SHHHHHHHHHHHHHHH
T ss_pred CCCCEEEcccccHHHHHHHccCCcccccCeEEEEECCccCCcCCCCCeeeeeeEEEEEEE-Ee-CHHHHHHHHHHHHHHH
Confidence 2367887544 455532 2333324666799999999987777888999998754 33 3677777777777653
No 60
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A*
Probab=97.08 E-value=0.00081 Score=70.69 Aligned_cols=34 Identities=3% Similarity=0.030 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHhh--cCCeEEeeCceeeccC
Q 013865 246 GIFRIQSQVGNIFRQFLL--SENFVEIHTPKLIAGS 279 (435)
Q Consensus 246 ~i~~~rs~i~~~~r~fl~--~~gF~EV~TP~l~~~~ 279 (435)
.=.+++..|.+.+|+.+. ..||.||.||+|....
T Consensus 37 ~G~~l~~~l~~~~r~~~~~~~~g~~ev~tP~l~~~~ 72 (505)
T 1ati_A 37 LGVELKNNLKQAWWRRNVYERDDMEGLDASVLTHRL 72 (505)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCSSEEEEBCCSEEETT
T ss_pred cHHHHHHHHHHHHHHHHHHhhCCcEEEEccccCCHH
Confidence 346778899999999999 8999999999998653
No 61
>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii}
Probab=97.04 E-value=0.002 Score=67.94 Aligned_cols=50 Identities=14% Similarity=0.244 Sum_probs=40.9
Q ss_pred eeEEEecceecCCCCCCccccccccceeeeecc-ccHHHHHHHHHHHHHHH
Q 013865 316 RVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIK-KHYSEVMDIVDRLFVTI 365 (435)
Q Consensus 316 rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~-~~~~d~m~~~e~li~~i 365 (435)
|+||+|+|||.+...+.+|.+||.+++.-+... -++.|+...++.++..+
T Consensus 219 rlFEiGrVFr~D~~~d~th~~ef~qLaglv~G~~vdF~DLKG~Le~ll~~L 269 (549)
T 2du7_A 219 KLFSIDRCFRREQREDRSHLMSYHSASCVVVGEDVSVDDGKVVAEGLLAQF 269 (549)
T ss_dssp EEEEEEEECCCCSSCSSSCCSCEEEEEEEEECTTCCHHHHHHHHHHHHGGG
T ss_pred EEEEEeeEEecCCcccCcCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 899999999986531346999999999988774 24889999999998866
No 62
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A*
Probab=96.95 E-value=0.0015 Score=68.86 Aligned_cols=51 Identities=12% Similarity=0.173 Sum_probs=41.8
Q ss_pred ceeEEEecceecCCCCCCccccccccceeeeecc-ccHHHHHHHHHHHHHHH
Q 013865 315 GRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIK-KHYSEVMDIVDRLFVTI 365 (435)
Q Consensus 315 ~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~-~~~~d~m~~~e~li~~i 365 (435)
-|+||||+|||.+..-+..|.+||++++..+... .++.|+..+++.++..+
T Consensus 206 vrLFEIG~VFr~d~~~d~th~~Ef~qLagli~G~~vdf~dLKgilE~LL~~L 257 (534)
T 2du3_A 206 IKLFSIDRCFRREQGEDATRLYTYFSASCVLVDEELSVDDGKAVAEALLRQF 257 (534)
T ss_dssp EEEEEEEEEECCCTTCSSSCCSEEEEEEEEEECSSCCHHHHHHHHHHHHGGG
T ss_pred eeEEEEeeEEecCccccccccceeeEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 3899999999986521567999999999998873 24889999999998865
No 63
>3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold, RRM domain, RNA recogntion, aminoacyl-tRNA synthetase, ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB: 3hfv_A* 3teg_A* 3tup_A
Probab=96.95 E-value=0.0027 Score=65.09 Aligned_cols=88 Identities=13% Similarity=0.175 Sum_probs=56.4
Q ss_pred HHHHHHHHhhcC--------CeEEeeC-ceeeccC--------CCCC-cc-eeEeccCCCceeecc--ChHHHHhhhccC
Q 013865 254 VGNIFRQFLLSE--------NFVEIHT-PKLIAGS--------SEGG-SA-VFRLDYKGQSACLAQ--SPQLHKQMSICG 312 (435)
Q Consensus 254 i~~~~r~fl~~~--------gF~EV~T-P~l~~~~--------~egg-a~-~F~v~~~~~~~~L~~--Spql~lq~~i~~ 312 (435)
+...||++|... ||.|+.+ |.+.+.. ...+ |. .-.+-|++....||. ||-+..- +..
T Consensus 53 ~~~~i~~~f~~~~~~~~g~~Gf~e~~~~~~v~s~~~NFd~L~~p~dHpaR~~~Dtfyi~~~~vLRThts~~~~~~--l~~ 130 (415)
T 3cmq_A 53 IKERVKEHFYKQYVGRFGTPLFSVYDNLSPVVTTWQNFDSLLIPADHPSRKKGDNYYLNRTHMLRAHTSAHQWDL--LHA 130 (415)
T ss_dssp HHHHHHHHHHHHHHHCSSSCCCEEECCCCSEEEHHHHTGGGTCCTTCGGGCGGGSCBSSSSEEECSSGGGGHHHH--HHT
T ss_pred HHHHHHHHHHhhhccccCCCCcEEEcCCCccccHHHHHHHhCCCCCCCcccccceEEecCCeEEcCCCcHHHHHH--HHH
Confidence 444555555554 8999999 6665321 1111 11 111225667777874 4544433 345
Q ss_pred CCceeEEEecceecCCCCCCccccccccceee
Q 013865 313 DFGRVFETGPVFRAEDSYTHRHLCEFTGLDVE 344 (435)
Q Consensus 313 g~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e 344 (435)
+..|+|++|.|||.+.. +..|.|.|.++|--
T Consensus 131 ~~~k~~~~G~VyR~D~~-da~h~n~fhQ~egv 161 (415)
T 3cmq_A 131 GLDAFLVVGDVYRRDQI-DSQHYPIFHQLEAV 161 (415)
T ss_dssp TCSEEEEEEEEECCCCC-BTTBCSEEEEEEEE
T ss_pred CCCCEEEeeeEEeccch-hhhhhHHhcCCCcE
Confidence 67799999999999974 78999999999943
No 64
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A
Probab=96.76 E-value=0.0016 Score=70.88 Aligned_cols=32 Identities=19% Similarity=0.296 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHhh-cCCeEEeeCceeec
Q 013865 246 GIFRIQSQVGNIFRQFLL-SENFVEIHTPKLIA 277 (435)
Q Consensus 246 ~i~~~rs~i~~~~r~fl~-~~gF~EV~TP~l~~ 277 (435)
.=.+++..|.+.+|+.|. ..||.||.||+|.+
T Consensus 99 ~G~~l~~~Ie~~~r~~~~~~~g~~EV~tP~l~~ 131 (693)
T 2zt5_A 99 VGCALKNNIIQTWRQHFIQEEQILEIDCTMLTP 131 (693)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHTCEECCCCSEEE
T ss_pred ChHHHHHHHHHHHHHHHHHhcCcEEEEeCCccc
Confidence 346788899999999998 56999999999985
No 65
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=96.61 E-value=0.0041 Score=66.32 Aligned_cols=51 Identities=16% Similarity=0.260 Sum_probs=41.6
Q ss_pred ceeEEEecceecCCCCCCccccccccceeeeecc-ccHHHHHHHHHHHHHHH
Q 013865 315 GRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIK-KHYSEVMDIVDRLFVTI 365 (435)
Q Consensus 315 ~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~-~~~~d~m~~~e~li~~i 365 (435)
-|+||||+|||++..-+.+|.+||.+++.-+... -++.|+...++.++..+
T Consensus 225 vRLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~vdF~DLKGvLE~LL~~L 276 (648)
T 2odr_B 225 FKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQF 276 (648)
T ss_dssp EEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTT
T ss_pred eEEEEEeeEEecCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 4899999999986521567999999999988763 24889999999999865
No 66
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=96.61 E-value=0.0075 Score=50.30 Aligned_cols=89 Identities=15% Similarity=0.213 Sum_probs=63.5
Q ss_pred EEeccccCCCCCCEEEEEEEEeee-------ecCC--CceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEE
Q 013865 93 TVVGALNGSLKDQEVLIRGRVHTT-------RPVG--NKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIV 163 (435)
Q Consensus 93 ~~i~~l~~~~~g~~V~v~GrV~~~-------R~~G--~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV 163 (435)
..|.+|. .|+.|.+.|+|.++ +..| +++.++.|.|+++.|.+.+-.... .....+..|++|
T Consensus 8 ~~I~~L~---~g~~v~i~~~V~~~~~~~~~~~k~G~~~~~~~~~l~D~TG~I~~t~w~~~~-------~~~~~l~~G~vv 77 (115)
T 2k50_A 8 DTISKLE---EGAETPVTGRVMKISSPRTFTTRKGREGKLANVIIADDTGELRAVFWTENI-------KLLKKFREGDVI 77 (115)
T ss_dssp CCTTTCC---TTCEEEEEEEEEEECCCEECCCTTSSCCEEEEEEEEETTEEEEEEEETTGG-------GGGGTCCTTSEE
T ss_pred EEHHHCC---CCCEeEEEEEEEECCCceEEEcCCCCEEEEEEEEEEeCCCeEEEEEeCchh-------hhhhcCCCCCEE
Confidence 4466664 48899999999998 2345 578999999999999999874311 112579999999
Q ss_pred EEEEEEecCCcccCCCceeEEEEEeEEEEeecC
Q 013865 164 DVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRA 196 (435)
Q Consensus 164 ~V~G~v~~~~~~~~~~t~~lEi~v~~i~vls~~ 196 (435)
.|.|.+.... =.|.++|.+.+...+.++
T Consensus 78 ~i~g~~v~~~-----f~g~~qL~~~~~~~i~~~ 105 (115)
T 2k50_A 78 RIKDVNIRGG-----FGGRKEAHLMPRSTVEVL 105 (115)
T ss_dssp EEEEEEECCC-----SSSSCEEEECTTCCEEEE
T ss_pred EEEeeEEccc-----cCCeEEEEECCCceEEEC
Confidence 9999885321 114578887766555544
No 67
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=96.59 E-value=0.0044 Score=66.25 Aligned_cols=51 Identities=16% Similarity=0.260 Sum_probs=41.6
Q ss_pred ceeEEEecceecCCCCCCccccccccceeeeecc-ccHHHHHHHHHHHHHHH
Q 013865 315 GRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIK-KHYSEVMDIVDRLFVTI 365 (435)
Q Consensus 315 ~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~-~~~~d~m~~~e~li~~i 365 (435)
-|+||||+|||++..-+.+|.+||.+++.-+... -++.|+...++.++..+
T Consensus 225 vRLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~vdF~DLKGvLE~LL~~L 276 (665)
T 2odr_A 225 FKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQF 276 (665)
T ss_dssp EEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTT
T ss_pred eEEEEEeeEEecCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 4899999999986521567999999999988763 24889999999999865
No 68
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=96.57 E-value=0.0045 Score=66.24 Aligned_cols=51 Identities=16% Similarity=0.260 Sum_probs=41.7
Q ss_pred ceeEEEecceecCCCCCCccccccccceeeeecc-ccHHHHHHHHHHHHHHH
Q 013865 315 GRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIK-KHYSEVMDIVDRLFVTI 365 (435)
Q Consensus 315 ~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~-~~~~d~m~~~e~li~~i 365 (435)
-|+||||+|||++...+.+|.+||.+++.-+... -++.|+...++.++..+
T Consensus 225 vRLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~vDF~DLKGvLE~LL~~L 276 (685)
T 2odr_D 225 FKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQF 276 (685)
T ss_dssp EEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTT
T ss_pred eEEEEeccEEecCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 4899999999986521567999999999988763 24889999999999865
No 69
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=96.48 E-value=0.0052 Score=65.94 Aligned_cols=51 Identities=16% Similarity=0.260 Sum_probs=41.6
Q ss_pred ceeEEEecceecCCCCCCccccccccceeeeecc-ccHHHHHHHHHHHHHHH
Q 013865 315 GRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIK-KHYSEVMDIVDRLFVTI 365 (435)
Q Consensus 315 ~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~-~~~~d~m~~~e~li~~i 365 (435)
-|+||||+|||.+..-+.+|.+||.+++.-+... -++.|+...++.++..+
T Consensus 225 vRLFEIGrVFR~D~~lDath~~EfhqLeGlv~G~~vDF~DLKGvLE~LL~~L 276 (701)
T 2odr_C 225 FKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQF 276 (701)
T ss_dssp EEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTT
T ss_pred eEEEEEeeEEccCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 4899999999986521567999999999988763 24889999999999865
No 70
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens}
Probab=96.43 E-value=0.0057 Score=63.41 Aligned_cols=91 Identities=11% Similarity=0.075 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHH-HHhhcCC-eEEeeCceeeccCCCCCcceeEeccCCCceeecc-ChHHHHhh----hcc--CCC-cee
Q 013865 248 FRIQSQVGNIFR-QFLLSEN-FVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQ-SPQLHKQM----SIC--GDF-GRV 317 (435)
Q Consensus 248 ~~~rs~i~~~~r-~fl~~~g-F~EV~TP~l~~~~~egga~~F~v~~~~~~~~L~~-Spql~lq~----~i~--~g~-~rV 317 (435)
..+|+.|.+.+| .|...+| +.||.||+....-.-|+-+.|. +||+- +-|-.... +.. ..+ =|+
T Consensus 104 ~~l~~nl~~~w~~~~~~~~~~~~eV~tp~~~~~~~SGH~d~~~-------~~LRPeTaqg~~~nfk~~~~s~r~~LP~~i 176 (459)
T 3ikl_A 104 VELRKNLAAEWWTSVVVFREQVFPVDALHHKPGPLLPGDSAFR-------GGLRENLLHGALEHYVNCLDLVNKRLPYGL 176 (459)
T ss_dssp HHHHHHHHHHHHHHHTTSSCSCEECCCCSBCCSCCCSSCSCCT-------TB-CSCSHHHHHHHTTTTTGGGTTBSSEEE
T ss_pred HHHHHHHHHHHHHHHhhccCceEeeccccccccccCcchhhhc-------ceECCCCChhHHHHHhhhhhhccccCCeEE
Confidence 467888997454 4445466 7779999865433445544444 77875 22222221 111 122 269
Q ss_pred EEEecceecCCC-CCCcc----ccccccceeee
Q 013865 318 FETGPVFRAEDS-YTHRH----LCEFTGLDVEM 345 (435)
Q Consensus 318 feIgp~FR~E~s-~t~rH----l~EFt~lE~e~ 345 (435)
.+||+|||+|.. .+.+| .-|||+.|.+.
T Consensus 177 aqig~~FR~E~g~~~~~~GL~RvrEFtq~E~~~ 209 (459)
T 3ikl_A 177 AQIGVCFHPVFDTKQIRNGVKSIGEKTEASLVW 209 (459)
T ss_dssp EEEEEEECCC----------CCCCEEEEEEEEE
T ss_pred EEEeeeeecccccccCCCCcccccceeeeeEEE
Confidence 999999999941 23333 36999999973
No 71
>3kf6_A Protein STN1; OB fold, chromosomal protein, DNA-binding, nucleus, telomere; 1.65A {Schizosaccharomyces pombe}
Probab=96.37 E-value=0.038 Score=49.22 Aligned_cols=80 Identities=15% Similarity=0.157 Sum_probs=61.5
Q ss_pred CEEEEEEEEeeeecCCCceEEEEEEeCCe-EEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCcccCCCceeE
Q 013865 105 QEVLIRGRVHTTRPVGNKLAFVVVRERVS-TVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQV 183 (435)
Q Consensus 105 ~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~-~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~~~~~~t~~l 183 (435)
+.|.|.|.|.+++... +-.+|.|-|++| .|.|++-.+.. ...-.....+..|++|.|.|.|..- .++.
T Consensus 48 ~~V~IvGiVv~~~~~~-~~~~ytIDD~TG~~I~cv~w~~~~---~~~~~~~~~l~~G~~VrV~G~v~~f-------r~~r 116 (159)
T 3kf6_A 48 RWIQIVGYIAAIDIYE-GKHVLTVDDCSGMVLRVVFIIQDD---FSMSKRAISMSPGNVVCVFGKINSF-------RSEV 116 (159)
T ss_dssp CEEEEEEEEEEEEEET-TEEEEEEECSSSCEEEEEEEGGGC---HHHHHHHTTCCTTCEEEEEEEEECS-------SSSC
T ss_pred EEEEEEEEEEEEEEeC-CEEEEEEecCCCCeEEEEEEccCC---CCcccccccCCCCCEEEEEEEEEee-------CCEE
Confidence 5799999999999887 447789999988 69999986532 1111223468999999999999642 2568
Q ss_pred EEEEeEEEEeec
Q 013865 184 EVQIKKLYCVSR 195 (435)
Q Consensus 184 Ei~v~~i~vls~ 195 (435)
+|.+.++.++..
T Consensus 117 qI~~~~i~~v~d 128 (159)
T 3kf6_A 117 ELIAQSFEELRD 128 (159)
T ss_dssp EEEEEEEEEECS
T ss_pred EEEEEEEEECCC
Confidence 999999999864
No 72
>1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=96.27 E-value=0.021 Score=47.86 Aligned_cols=97 Identities=16% Similarity=0.136 Sum_probs=67.4
Q ss_pred ceEEeccccCCCCCCEEEEEEEEeee---------ecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCc
Q 013865 91 EWTVVGALNGSLKDQEVLIRGRVHTT---------RPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNES 161 (435)
Q Consensus 91 ~~~~i~~l~~~~~g~~V~v~GrV~~~---------R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~es 161 (435)
.++.|.+|.+... ..+|+|||.++ +..| ++.=++|.|..+.|++++.. ...-+|...|..|+
T Consensus 3 ~~~~Is~L~p~~~--~w~I~~rV~~k~~~r~~~~~~~~g-~~~~~~L~De~G~I~at~~~------~~~~~f~~~l~eG~ 73 (114)
T 1ynx_A 3 PIFAIEQLSPYQN--VWTIKARVSYKGEIKTWHNQRGDG-KLFNVNFLDTSGEIRATAFN------DFATKFNEILQEGK 73 (114)
T ss_dssp CBCCGGGCCTTTC--CCEEEEEEEEEEEEEEEECSSCEE-EEEEEEEEETTEEEEEEECH------HHHHHHHHHSCSSS
T ss_pred ceEEHHHCCCCCC--ceEEEEEEEEeccceEEecCCCCc-eEEEEEEECCCCeEEEEECH------HHHHHHHhhcccCc
Confidence 4567777766432 47888888853 2235 77778899999999999863 23345778899999
Q ss_pred EEEEEEEEecC-CcccCCCceeEEEEEeEEEEeecC
Q 013865 162 IVDVIGVVSVP-DVEIKGATQQVEVQIKKLYCVSRA 196 (435)
Q Consensus 162 iV~V~G~v~~~-~~~~~~~t~~lEi~v~~i~vls~~ 196 (435)
++.|.|--..+ .+.-+...+.+||....-..+.+|
T Consensus 74 vy~Is~~~V~~a~~~y~~~~~~yei~f~~~T~I~~~ 109 (114)
T 1ynx_A 74 VYYVSKAKLQPAKPQFTNLTHPYELNLDRDTVIEEC 109 (114)
T ss_dssp EEEEESCEEEECCTTTSSSSSCEEEEECSSCEEEES
T ss_pred EEEECCcEEEECCCCcccCCCCEEEEECCCCEEEEC
Confidence 99999744333 322223346799999887777776
No 73
>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii}
Probab=96.18 E-value=0.092 Score=43.37 Aligned_cols=89 Identities=15% Similarity=0.184 Sum_probs=66.2
Q ss_pred cceEEeccccCCCCCCEEEEEEEEeeee-------cCCC--ceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCC
Q 013865 90 REWTVVGALNGSLKDQEVLIRGRVHTTR-------PVGN--KLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNE 160 (435)
Q Consensus 90 ~~~~~i~~l~~~~~g~~V~v~GrV~~~R-------~~G~--kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~e 160 (435)
.++.+|++|.+ |..|.|.|+|.++- ..|+ ++.=+.|.|.++.|.+++=.+.. + ..+.+|
T Consensus 3 ~~~~~I~dL~~---~~~v~v~g~V~~~~~~r~~~~~~G~~~~v~~~~l~D~TG~IrvtlW~~~a----~-----~~l~~G 70 (105)
T 3dm3_A 3 KDTYNIGELSP---GMTATFEGEVISALPIKEFKRADGSIGKLKSFIVRDETGSIRVTLWDNLT----D-----IDVGRG 70 (105)
T ss_dssp -CEECGGGCCS---SEEEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEETTEEEEEEEEGGGG----G-----SCCCTT
T ss_pred ccceEHHHCCC---CCeEEEEEEEEECCCceEEEcCCCCeeEEEEEEEECCCCcEEEEEECccc----c-----cccCCC
Confidence 35677888876 47899999998863 2342 45558889999999998753211 0 169999
Q ss_pred cEEEEEEEEecCCcccCCCceeEEEEEeEEEEeecC
Q 013865 161 SIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRA 196 (435)
Q Consensus 161 siV~V~G~v~~~~~~~~~~t~~lEi~v~~i~vls~~ 196 (435)
++|.|.|.++... .+.+||++.....+.+|
T Consensus 71 dvv~i~g~vk~~~------~g~~eL~~g~~~~i~~~ 100 (105)
T 3dm3_A 71 DYVRVRGYIREGY------YGGLECTANYVEILKKG 100 (105)
T ss_dssp CEEEEEEEEEECT------TSSEEEEEEEEEEEECC
T ss_pred CEEEEEEEEEEcc------CCCEEEEeCCceEEEec
Confidence 9999999886532 25799999999999888
No 74
>1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B*
Probab=96.10 E-value=0.013 Score=60.79 Aligned_cols=116 Identities=9% Similarity=0.031 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHHH-h-hcCCeEEeeCceeeccCCCCC--------ccee---------------Ee--ccCCCceeec
Q 013865 247 IFRIQSQVGNIFRQF-L-LSENFVEIHTPKLIAGSSEGG--------SAVF---------------RL--DYKGQSACLA 299 (435)
Q Consensus 247 i~~~rs~i~~~~r~f-l-~~~gF~EV~TP~l~~~~~egg--------a~~F---------------~v--~~~~~~~~L~ 299 (435)
=..++..|.+++++. + ...|+.||.||+|.+...-.+ ++-+ .+ .+++.++||+
T Consensus 61 G~~l~~~i~~~~~~~~~~~~~g~~ev~tp~l~~~~~~~~s~~g~~~r~d~~~e~~~~~g~~~eem~~~~~~~~~~~~~LR 140 (454)
T 1g5h_A 61 GVELRKNLASQWWSSMVVFREQVFAVDSLHQEPGSSQPRDSAFRLVSPESIREILQDREPSKEQLVAFLENLLKTSGKLR 140 (454)
T ss_dssp HHHHHHHHHHHHHHHHTTTCTTEEECCCCSEECCCCSSCCCCCEEECHHHHHHHHCC---CHHHHHHHHHHHHHHSCEEC
T ss_pred HHHHHHHHHHHHHHHHhhhcCCeEEEEcCccCChhhccccccCcccHHHHHHHHhhccCCCHHHHHHHHHhhcCcceeec
Confidence 356788899988876 4 589999999999986542111 1111 11 2345677888
Q ss_pred c--ChHH---HHhhhccC--CC-ceeEEEeccee---cCCCC--CCccccccccceeeeeccccHHHHHHHHHHHHHH
Q 013865 300 Q--SPQL---HKQMSICG--DF-GRVFETGPVFR---AEDSY--THRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVT 364 (435)
Q Consensus 300 ~--Spql---~lq~~i~~--g~-~rVfeIgp~FR---~E~s~--t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~ 364 (435)
- +|-. |+..+-.. .+ =++++||+||| ||-+- ...=.-||||.|.+. |.+ .++..+..+.++..
T Consensus 141 Peta~g~~~~f~~~~~s~r~~LP~~~aqig~~fR~~~nE~s~~~Gl~R~REF~q~E~~~-F~~-pe~~~e~~~~~~~~ 216 (454)
T 1g5h_A 141 ATLLHGALEHYVNCLDLVNRKLPFGLAQIGVCFHPVSNSNQTPSSVTRVGEKTEASLVW-FTP-TRTSSQWLDFWLRH 216 (454)
T ss_dssp SCSHHHHHHTHHHHHHHTTTBSCEEEEEEEEEEEEEC---------CEEEEEEEEEEEE-EEC-HHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHhhhHhhcccCCCEEEEEeeeeccCCcccccCCCCccccCceehhheEE-EeC-HhhHHHHHHHHHHH
Confidence 4 2222 22222111 34 38999999999 69641 112357999999985 553 66666655555443
No 75
>3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_A 1quq_A 1l1o_B
Probab=95.61 E-value=0.09 Score=44.95 Aligned_cols=79 Identities=14% Similarity=0.147 Sum_probs=56.6
Q ss_pred CEEEEEEEEeeeecCCCceEEEEEEeCCe-EEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCcccCCCceeE
Q 013865 105 QEVLIRGRVHTTRPVGNKLAFVVVRERVS-TVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQV 183 (435)
Q Consensus 105 ~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~-~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~~~~~~t~~l 183 (435)
..|++-|+|.++......+. +.|.|++| .|.|..-...+..+ .-...+..|++|.|.|.++.- .+..
T Consensus 32 ~~V~iVG~V~~~~~~~~~~~-~~ldD~TG~~I~~~~W~~~~~~~----~~~~~~~~g~yVrV~G~l~~f-------~g~~ 99 (132)
T 3kdf_D 32 SQVTIVGIIRHAEKAPTNIV-YKIDDMTAAPMDVRQWVDTDDTS----SENTVVPPETYVKVAGHLRSF-------QNKK 99 (132)
T ss_dssp CEEEEEEEEEEEEECSSEEE-EEEECSSSSCEEEEEEC-------------CCCCTTCEEEEEEEEEEE-------TTEE
T ss_pred EEEEEEEEEEEEEEcCCeEE-EEEECCCCCEEEEEEEccCCCcc----cccccccCCCEEEEEEEEEeE-------CCEE
Confidence 47999999999998875644 68999999 99999865322111 113579999999999998642 1457
Q ss_pred EEEEeEEEEeec
Q 013865 184 EVQIKKLYCVSR 195 (435)
Q Consensus 184 Ei~v~~i~vls~ 195 (435)
.|.+..|..+..
T Consensus 100 qi~~~~ir~v~d 111 (132)
T 3kdf_D 100 SLVAFKIMPLED 111 (132)
T ss_dssp EEEEEEEEECSS
T ss_pred EEEEEEEEEcCC
Confidence 788888877643
No 76
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=95.58 E-value=0.19 Score=40.65 Aligned_cols=83 Identities=13% Similarity=0.194 Sum_probs=59.3
Q ss_pred EeccccCCCCCCEEEEEEEEeeee-------cCCC--ceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHh-cCCCCcEE
Q 013865 94 VVGALNGSLKDQEVLIRGRVHTTR-------PVGN--KLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVR-SLSNESIV 163 (435)
Q Consensus 94 ~i~~l~~~~~g~~V~v~GrV~~~R-------~~G~--kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~-~l~~esiV 163 (435)
+|.+|.+ |..|.|.|+|.++- ..|. ++.=+.|.|++++|-+++-.+. +. .+..||+|
T Consensus 4 kI~dl~~---g~~v~i~~~V~~~~~~r~~~~~~G~~~~v~~~~l~DeTG~I~~tlW~~~----------~~~~i~~Gdvv 70 (97)
T 3e0e_A 4 KISELMP---NLSGTINAEVVTAYPKKEFSRKDGTKGQLKSLFLKDDTGSIRGTLWNEL----------ADFEVKKGDIA 70 (97)
T ss_dssp CGGGCCT---TEEEEEEEEEEEECCCEEEC----CCEEEEEEEEEETTEEEEEEEEGGG----------GGCCCCTTCEE
T ss_pred EHHHCCC---CCcEEEEEEEEECCCceEEEcCCCCeeEEEEEEEECCCCcEEEEEECCc----------cccccCCCCEE
Confidence 4666654 57899999998863 2342 4566888999999999976321 12 69999999
Q ss_pred EEEEEEecCCcccCCCceeEEEEEeEEEEeecC
Q 013865 164 DVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRA 196 (435)
Q Consensus 164 ~V~G~v~~~~~~~~~~t~~lEi~v~~i~vls~~ 196 (435)
.|.|.+..- .+.+||++.+.-.+.+|
T Consensus 71 ~i~g~v~~~-------~~~~el~~g~~~~i~k~ 96 (97)
T 3e0e_A 71 EVSGYVKQG-------YSGLEISVDNIGIIEKS 96 (97)
T ss_dssp EEEEEEEEC---------CEEEEEEEEEEEECC
T ss_pred EEEEEEEEc-------CCeEEEEECCCcEEEEC
Confidence 999987542 24799999988777654
No 77
>3ig2_A Phenylalanyl-tRNA synthetase beta chain; phers, MCSG, structural genomics, midwest center for structural GE protein structure initiative; HET: MSE; 2.09A {Bacteroides fragilis}
Probab=95.53 E-value=0.057 Score=50.03 Aligned_cols=113 Identities=18% Similarity=0.209 Sum_probs=68.2
Q ss_pred HHHHHHHHHhhcCCeEEeeCceeeccCC-C-----CCcceeEe-ccC-CCceeeccChHHHHhhhccC----CCc--eeE
Q 013865 253 QVGNIFRQFLLSENFVEIHTPKLIAGSS-E-----GGSAVFRL-DYK-GQSACLAQSPQLHKQMSICG----DFG--RVF 318 (435)
Q Consensus 253 ~i~~~~r~fl~~~gF~EV~TP~l~~~~~-e-----gga~~F~v-~~~-~~~~~L~~Spql~lq~~i~~----g~~--rVf 318 (435)
.+.+.+|+.|...||.||-|-.+++... + +......+ |-. ..--.||+|-=--+=..+.- +.. |+|
T Consensus 8 ~~~~~ir~~l~~~G~~Evitysf~~~~~~~~~~~~~~~~~v~l~NPls~e~~vmRtsLlpgLL~~~~~N~~r~~~~v~lF 87 (213)
T 3ig2_A 8 KLQNLVAEQLVGCGFNEILNNSLTRAAYYDGLESYPSKNLVMLLNPLSADLNCMRQTLLFGGLESIAHNANRKNADLKFF 87 (213)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEECGGGGTTCSSSCGGGCEEBSSGGGCSCCEECSCSHHHHHHHHHHC------CCEEE
T ss_pred HHHHHHHHHHHHCCCeEEeccccCCHHHHHhhcccCcCCeEEEeCCcchhHHHHHHHhHHHHHHHHHHHhcCCCCCeeEE
Confidence 5678899999999999999999986431 1 11123333 222 23457887743332223322 232 899
Q ss_pred EEecceecCCCCC-----Cccccccccceeeeecc------------ccHHHHHHHHHHHHHHH
Q 013865 319 ETGPVFRAEDSYT-----HRHLCEFTGLDVEMEIK------------KHYSEVMDIVDRLFVTI 365 (435)
Q Consensus 319 eIgp~FR~E~s~t-----~rHl~EFt~lE~e~a~~------------~~~~d~m~~~e~li~~i 365 (435)
|||+||+.+.... ..+..|..+|-.-+... -++.|+...+|.++..+
T Consensus 88 EiG~Vf~~~~~~~~~~~~~~~~~e~~~la~~~~G~~~~~~w~~~~~~~df~dlKg~ve~ll~~l 151 (213)
T 3ig2_A 88 EFGNCYHFDAEKKNPEKVLAPYSEDYHLGLWVTGKMVSNSWAHADENTSVYELKAYVENIFKRL 151 (213)
T ss_dssp EEEEEEEECC----------CEEEEEEEEEEEEEEECCSCC----CHHHHHHHHHHHHHHHHHT
T ss_pred EeeeEEecCcccccccccccccchhHEEEEEEECCCccccCCCCCCCcCHHHHHHHHHHHHHHh
Confidence 9999999765211 12345777777765541 13778888888877665
No 78
>3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=95.38 E-value=0.049 Score=58.18 Aligned_cols=112 Identities=13% Similarity=0.138 Sum_probs=72.0
Q ss_pred HHHHHHHHHhhcCCeEEeeCceeeccC--------CCCCcceeEe-ccCC-CceeeccChHHHHhhhccC----C-Ccee
Q 013865 253 QVGNIFRQFLLSENFVEIHTPKLIAGS--------SEGGSAVFRL-DYKG-QSACLAQSPQLHKQMSICG----D-FGRV 317 (435)
Q Consensus 253 ~i~~~~r~fl~~~gF~EV~TP~l~~~~--------~egga~~F~v-~~~~-~~~~L~~Spql~lq~~i~~----g-~~rV 317 (435)
.+.+.+|+.|...||.||.|+.+++.. ..++...+.+ |-.. .--.||+|-=--+=..+.. + -=|+
T Consensus 395 ~~~~~ir~~l~~~Gf~Evitysf~s~~~~~~~l~~~~~~~~~v~L~NPis~e~svmRtsLlpgLL~~l~~N~~~~~~vrl 474 (589)
T 3l4g_B 395 KLTELLRHDMAAAGFTEALTFALCSQEDIADKLGVDISATKAVHISNPKTAEFQVARTTLLPGLLKTIAANRKMPLPLKL 474 (589)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEECHHHHTGGGTSCTTSSCCCBBSSCSSGGGSEECSCSHHHHHHHHHHTTTSCSCEEE
T ss_pred HHHHHHHHHHHHCCCEEEecCcccCHHHHHHHhCCCCCCCCeEEEcCCCchhHhHHHHHHHHHHHHHHHHHhcCCCceEE
Confidence 357789999999999999999998542 1112233433 2222 2356777632222112221 1 2389
Q ss_pred EEEecceecCCCCCCccccccccceeeeecc-ccHHHHHHHHHHHHHHH
Q 013865 318 FETGPVFRAEDSYTHRHLCEFTGLDVEMEIK-KHYSEVMDIVDRLFVTI 365 (435)
Q Consensus 318 feIgp~FR~E~s~t~rHl~EFt~lE~e~a~~-~~~~d~m~~~e~li~~i 365 (435)
||+|+|||.... +.+|.+|+.++..-+... .++.++-..++.++..+
T Consensus 475 FEiG~Vf~~d~~-~~~~~~e~~~la~~~~g~~~~f~~lkg~le~ll~~l 522 (589)
T 3l4g_B 475 FEISDIVIKDSN-TDVGAKNYRHLCAVYYNKNPGFEIIHGLLDRIMQLL 522 (589)
T ss_dssp EEEEEEEEECTT-STTSEEEEEEEEEEEESSSCCHHHHHHHHHHHHHHT
T ss_pred EEeeeEEecCCc-cccCCccccEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 999999998763 457888999998766542 24777777777776654
No 79
>3au7_A TIAS, putative uncharacterized protein; ATP hydrolysis, RNA binding protein; 2.60A {Archaeoglobus fulgidus} PDB: 3amt_A* 3amu_A*
Probab=95.24 E-value=0.19 Score=51.05 Aligned_cols=80 Identities=23% Similarity=0.359 Sum_probs=64.0
Q ss_pred CCCCCEEEEEEEEeee--ecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCcccCC
Q 013865 101 SLKDQEVLIRGRVHTT--RPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKG 178 (435)
Q Consensus 101 ~~~g~~V~v~GrV~~~--R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~~~~~ 178 (435)
-.....++|+|.|.+. +..| .=+|+.|.|+++.|.|++-.. ++.+-+.+..|..||.|.|.|-++.
T Consensus 281 ~~~~~~~~v~G~V~~~P~~~~G-GHV~f~l~d~~~~i~c~ayep----tk~fr~~vr~L~~GD~V~v~G~v~~------- 348 (402)
T 3au7_A 281 LENYRSYRLRGRVTLEPYDIEG-GHVFFEIDTKFGSVKCAAFEP----TKQFRNVIRLLRKGDVVEVYGSMKK------- 348 (402)
T ss_dssp CCTTCEEEEEEEEEEEEEEETT-TEEEEEEEETTEEEEEEECGG----GTTHHHHHTTCCTTCEEEEEEEEET-------
T ss_pred cccCceEEEEEEEecCcEeccC-ceEEEEEEcCCCEEEEEEEcc----chHHHHHHhcCCCCCEEEEEEeecC-------
Confidence 3456899999999987 4455 448899999999999999752 3455667789999999999999754
Q ss_pred CceeEEEEEeEEEEeecC
Q 013865 179 ATQQVEVQIKKLYCVSRA 196 (435)
Q Consensus 179 ~t~~lEi~v~~i~vls~~ 196 (435)
+ .|.++++.+++-+
T Consensus 349 --g--tLnvEk~~v~~l~ 362 (402)
T 3au7_A 349 --D--TINLEKIQIVELA 362 (402)
T ss_dssp --T--EEEEEEEEEEECC
T ss_pred --C--EEEEEEEEEcccC
Confidence 2 6899999999764
No 80
>4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=95.10 E-value=0.16 Score=43.66 Aligned_cols=79 Identities=11% Similarity=0.112 Sum_probs=56.3
Q ss_pred CEEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCcccCCCceeEE
Q 013865 105 QEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVE 184 (435)
Q Consensus 105 ~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~~~~~~t~~lE 184 (435)
..|++-|+|.+++.....+. +.|.|+++.|.|..=......+ ..-...+..|++|.|.|.+..- .+...
T Consensus 37 ~~V~iVG~V~~~~~~~~~~~-~~ldD~TG~I~~~~W~~~~~~~---~~~~~~~~~g~yVrV~G~v~~f-------~g~~q 105 (136)
T 4gop_B 37 GQLTFVAVVRNISRNATNVA-YSVEDGTGQIEVRQWLDSSSDD---SSKASEIRNNVYVRVLGTLKSF-------QNRRS 105 (136)
T ss_dssp CEEEEEEEEEEEEECSSEEE-EEEECSSCEEEEEEECC-----------CCSCCTTCEEEEEEEEEEE-------TTEEE
T ss_pred EEEEEEEEEEEEEecCCeEE-EEEECCCCCEEEEEecccCCcc---cccccccCCCCEEEEEEEEEEe-------CCEEE
Confidence 47999999999998875544 6899999999998764321100 0123579999999999998642 14577
Q ss_pred EEEeEEEEee
Q 013865 185 VQIKKLYCVS 194 (435)
Q Consensus 185 i~v~~i~vls 194 (435)
|.+..|..+.
T Consensus 106 i~~~~ir~v~ 115 (136)
T 4gop_B 106 ISSGHMRPVI 115 (136)
T ss_dssp EEESEEEECS
T ss_pred EEEEEEEECC
Confidence 8888887764
No 81
>1nnx_A Protein YGIW; structural genomics, hypothetical protein, OB-fold, structure 2 function project, S2F, unknown function; 1.45A {Escherichia coli} SCOP: b.40.10.1
Probab=95.07 E-value=0.084 Score=44.06 Aligned_cols=81 Identities=20% Similarity=0.256 Sum_probs=59.4
Q ss_pred EeccccCCCCCCEEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHH-hcCCCCcEEEEEEEEecC
Q 013865 94 VVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFV-RSLSNESIVDVIGVVSVP 172 (435)
Q Consensus 94 ~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~-~~l~~esiV~V~G~v~~~ 172 (435)
.+.+......+..|++.|.|...-.. .+ |.++|++++|+|-++.. .|. ..+++++-|.|.|.|-+.
T Consensus 27 TV~~a~~~~Dd~~V~L~G~Iv~~~~~-d~---Y~F~D~TG~I~VeId~~---------~w~g~~v~p~~~Vri~GevDkd 93 (109)
T 1nnx_A 27 TVESAKSLRDDTWVTLRGNIVERISD-DL---YVFKDASGTINVDIDHK---------RWNGVTVTPKDTVEIQGEVDKD 93 (109)
T ss_dssp CHHHHTTSCSSEEEEEEEEEEEEEET-TE---EEEEETTEEEEEECCGG---------GSTTCCCCTTSCEEEEEEEEEE
T ss_pred eHHHHhhCcCCCeEEEEEEEEEEeCC-Ce---EEEECCCccEEEEEChh---------hcCCcccCCCCEEEEEEEECCC
Confidence 34444455678999999999875432 23 78999999999998743 133 368999999999999752
Q ss_pred CcccCCCceeEEEEEeEEEEee
Q 013865 173 DVEIKGATQQVEVQIKKLYCVS 194 (435)
Q Consensus 173 ~~~~~~~t~~lEi~v~~i~vls 194 (435)
- ...||.|..|.+|.
T Consensus 94 ~-------~~~eIdV~~i~~~~ 108 (109)
T 1nnx_A 94 W-------NSVEIDVKQIRKVN 108 (109)
T ss_dssp T-------TEEEEEEEEEEEC-
T ss_pred C-------CceEEEEEEEEEcc
Confidence 2 24688899998874
No 82
>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B*
Probab=94.61 E-value=0.2 Score=55.43 Aligned_cols=111 Identities=17% Similarity=0.098 Sum_probs=72.1
Q ss_pred HHHHHHHHHhhcCCeEEeeCceeeccCCC----CCcc-eeEe-ccCC-CceeeccChHHHHhhhcc----CCC--ceeEE
Q 013865 253 QVGNIFRQFLLSENFVEIHTPKLIAGSSE----GGSA-VFRL-DYKG-QSACLAQSPQLHKQMSIC----GDF--GRVFE 319 (435)
Q Consensus 253 ~i~~~~r~fl~~~gF~EV~TP~l~~~~~e----gga~-~F~v-~~~~-~~~~L~~Spql~lq~~i~----~g~--~rVfe 319 (435)
.+.+.+|++|...||.|+.|..+++...- +... .+.+ |... ....||+|-=--+=..+. -+. =|+||
T Consensus 497 ~~~~~ir~~L~~~Gf~Evitysfvs~~~~~~l~~~~~~~v~L~NPis~e~svLRtsLlpgLL~~l~~N~~r~~~~vrlFE 576 (795)
T 2rhq_B 497 HKTRTLKETLEGAGLNQAITYSLVSKDHAKDFALQERPTISLLMPMSEAHATLRQSLLPHLIEATAYNVARKNKDVRLYE 576 (795)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEECTTTTTTTCSSCCCCEECSSCSCTTSSEECSCSHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred HHHHHHHHHHHHCCCEEEecCCccCHHHHHhhCCCCCceEEEcCCCchhhhhhhhccHHHHHHHHHHHhcCCCCCeEEEE
Confidence 46778999999999999999999865311 1222 2443 2222 234677554222222222 122 39999
Q ss_pred EecceecCCCCCCccccccccceeeeecc------------ccHHHHHHHHHHHHHHH
Q 013865 320 TGPVFRAEDSYTHRHLCEFTGLDVEMEIK------------KHYSEVMDIVDRLFVTI 365 (435)
Q Consensus 320 Igp~FR~E~s~t~rHl~EFt~lE~e~a~~------------~~~~d~m~~~e~li~~i 365 (435)
||+|||.+.. +..| +||+++..-+... -++.|+...++.++..+
T Consensus 577 iG~Vf~~d~~-~~~~-~e~~~la~l~~G~~~~~~w~~~~~~~dF~dlKg~le~ll~~l 632 (795)
T 2rhq_B 577 IGRVFFGNGE-GELP-DEVEYLSGILTGEYVVNAWQGKKEEIDFFIAKGVVDRVAEKL 632 (795)
T ss_dssp EEEEEECCCT-TSCC-EEEEEEEEEEESEEEEEGGGTEEEECCHHHHHHHHHHHHHHH
T ss_pred EeeEEecCCc-ccCc-chhhEEEEEEEeccccccccCCCCCCCHHHHHHHHHHHHHHc
Confidence 9999997542 2256 8999998766542 25889999999999865
No 83
>3ica_A Phenylalanyl-tRNA synthetase beta chain; APC61692.1, phenylalanyl-tRNA SYNT beta subunit, structural genomics, PSI-2; HET: TAM; 2.44A {Porphyromonas gingivalis}
Probab=94.58 E-value=0.25 Score=45.57 Aligned_cols=113 Identities=18% Similarity=0.209 Sum_probs=72.0
Q ss_pred HHHHHHHHHhhcCCeEEeeCceeeccCC-C-----CCcceeEe-ccCC-CceeeccChHHHHhhhc----cCCCc--eeE
Q 013865 253 QVGNIFRQFLLSENFVEIHTPKLIAGSS-E-----GGSAVFRL-DYKG-QSACLAQSPQLHKQMSI----CGDFG--RVF 318 (435)
Q Consensus 253 ~i~~~~r~fl~~~gF~EV~TP~l~~~~~-e-----gga~~F~v-~~~~-~~~~L~~Spql~lq~~i----~~g~~--rVf 318 (435)
.+.+.+|+.|...||.||-|-.+++... + +......+ |-.. .--.||+|-=--+=..+ .-+.. |+|
T Consensus 8 ~~~~~ir~~L~~~G~~Evitysf~s~~~~~~~~~~~~~~~v~l~NPls~e~~vmRtsLlpgLL~~~~~N~~r~~~~~~lF 87 (213)
T 3ica_A 8 KWQTVVSEQLVGAGFNEILNNSLTAGSYYEGLKSHPREMAVELMNPLSQELNCMRQTLLFGGLETLSHNLRRKHLSLYLF 87 (213)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEEEGGGGTTCSSSCGGGCCBCSSBSCSSEEEECSSSHHHHHHHHHHHHTTTCSEEEEE
T ss_pred HHHHHHHHHHHHCCCceeeeccCCCHHHHhhhcccCcCCeEEecCCccHHHHHHHHHhHHHHHHHHHHHHcCCCCCeeEE
Confidence 5778899999999999999999986431 1 11122222 3222 34678887433322222 23443 899
Q ss_pred EEecceecCCCC-----CCccccccccceeeeecc------------ccHHHHHHHHHHHHHHH
Q 013865 319 ETGPVFRAEDSY-----THRHLCEFTGLDVEMEIK------------KHYSEVMDIVDRLFVTI 365 (435)
Q Consensus 319 eIgp~FR~E~s~-----t~rHl~EFt~lE~e~a~~------------~~~~d~m~~~e~li~~i 365 (435)
|||+||+.++.. ...+..|..+|-.-+... -++.|+..++|.++..+
T Consensus 88 EiG~Vf~~~~~~~~~~~~~~~~~e~~~la~~~~G~~~~~~w~~~~~~~df~d~Kg~ve~ll~~l 151 (213)
T 3ica_A 88 EWGKCYRFHAAKRTDETPLAAYAEDDRLGIWICGQRVHNSWAHPEEPTSVFELKAVVEQVLCRV 151 (213)
T ss_dssp EEEEEEEEECCCC--CCSSCEEEEEEEEEEEEEEBCCC-----CCCBCCHHHHHHHHHHHHHHT
T ss_pred EeeeEEecCCccccccccccccchhhEEEEEEeCCCCcccCCCCCCCcCHHHHHHHHHHHHHHh
Confidence 999999975421 113456777777765541 24888888888888765
No 84
>1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3
Probab=93.82 E-value=0.44 Score=39.81 Aligned_cols=89 Identities=19% Similarity=0.190 Sum_probs=61.9
Q ss_pred EEeccccCCCCC-CEEEEEEEEeee---e----cCCC-ceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEE
Q 013865 93 TVVGALNGSLKD-QEVLIRGRVHTT---R----PVGN-KLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIV 163 (435)
Q Consensus 93 ~~i~~l~~~~~g-~~V~v~GrV~~~---R----~~G~-kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV 163 (435)
.+|.+|.+ | ..|.+.|+|.++ | +.|+ ...=+.|.|.+++|.+.+=... +..+..|++|
T Consensus 3 ~~I~dL~~---~~~~v~~~~~V~~~~~~~~~~~k~G~~~~~~~~l~D~TG~I~~tlW~~~----------~~~~~~G~vv 69 (119)
T 1o7i_A 3 EKVGNLKP---NMESVNVTVRVLEASEARQIQTKNGVRTISEAIVGDETGRVKLTLWGKH----------AGSIKEGQVV 69 (119)
T ss_dssp CCGGGCCT---TCSSEEEEEEEEEECCCEEECCTTCCEEEEEEEEEETTEEEEEEEEGGG----------TTCCCTTCEE
T ss_pred EEHHHCcC---CCCcEEEEEEEEECCCCeeEEecCCCEEEEEEEEEeCCCEEEEEEECCh----------hhcCCCCCEE
Confidence 45666654 4 368999999876 4 3453 5667788899999999886421 1358999999
Q ss_pred EEE-EEEecCCcccCCCceeEEEEEeEEEEeecC--CCCCc
Q 013865 164 DVI-GVVSVPDVEIKGATQQVEVQIKKLYCVSRA--AKTPI 201 (435)
Q Consensus 164 ~V~-G~v~~~~~~~~~~t~~lEi~v~~i~vls~~--~~lP~ 201 (435)
.|. |.+..- .|.++|.+.+...+.++ ..+|.
T Consensus 70 ~i~~g~v~~~-------~g~~qL~i~~~~~i~~~~~~~~~~ 103 (119)
T 1o7i_A 70 KIENAWTTAF-------KGQVQLNAGSKTKIAEASEDGFPE 103 (119)
T ss_dssp EEEEEEEEEE-------TTEEEEEECTTCEEEECCCTTCCC
T ss_pred EEEeEEEEEe-------CCEEEEEECCCEEEEEcCCcCCCc
Confidence 999 777531 25689999886666655 24553
No 85
>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A
Probab=92.93 E-value=0.32 Score=45.50 Aligned_cols=98 Identities=12% Similarity=0.092 Sum_probs=67.0
Q ss_pred cceEEeccccCCCCCCEEEEEEEEeee---e------cCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCC
Q 013865 90 REWTVVGALNGSLKDQEVLIRGRVHTT---R------PVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNE 160 (435)
Q Consensus 90 ~~~~~i~~l~~~~~g~~V~v~GrV~~~---R------~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~e 160 (435)
..++.|.+|.+.. ..++|+|||.++ | ..| ++.-++|.|..+.|++++... ..-+|...|..|
T Consensus 6 ~~~~~I~~L~p~~--~~w~I~~rV~~k~~~r~~~~~~~~g-~~~~~~L~De~G~I~at~~~~------~~~~~~~~l~~G 76 (246)
T 1jmc_A 6 SKVVPIASLTPYQ--SKWTICARVTNKSQIRTWSNSRGEG-KLFSLELVDESGEIRATAFNE------QVDKFFPLIEVN 76 (246)
T ss_dssp -CBCCGGGCCTTC--CCCEEEEEEEEECCCEEEECSSCEE-EEEEEEEECSSCEEEEEEEHH------HHHHHGGGCCTT
T ss_pred cceEEHHHCCCCC--CceEEEEEEEEecccceeeCCCCCc-eEEEEEEECCCCeEEEEEChH------HHHHhhhhcccC
Confidence 3567788887643 357899999865 2 234 566678999988999998732 234566789999
Q ss_pred cEEEEEEEEecCC-cccCCCceeEEEEEeEEEEeecC
Q 013865 161 SIVDVIGVVSVPD-VEIKGATQQVEVQIKKLYCVSRA 196 (435)
Q Consensus 161 siV~V~G~v~~~~-~~~~~~t~~lEi~v~~i~vls~~ 196 (435)
+++.|.+...++. +.-+...+.+||....-..+.+|
T Consensus 77 ~vy~i~~~~v~~~~~~y~~~~~~~ei~~~~~T~I~~~ 113 (246)
T 1jmc_A 77 KVYYFSKGTLKIANKQFTAVKNDYEMTFNNETSVMPC 113 (246)
T ss_dssp CEEEEECCEEEECCGGGCCCCCSEEEECCTTCEEEEC
T ss_pred CEEEECCCEEEEcccCcccCCCCEEEEEcCCcEEEEc
Confidence 9999998544332 22222336799999876666666
No 86
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A
Probab=91.59 E-value=1.2 Score=36.60 Aligned_cols=87 Identities=10% Similarity=0.045 Sum_probs=62.1
Q ss_pred eEEeccccCCCCCCEEEEEEEEeeeec--CCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEE-EE
Q 013865 92 WTVVGALNGSLKDQEVLIRGRVHTTRP--VGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVI-GV 168 (435)
Q Consensus 92 ~~~i~~l~~~~~g~~V~v~GrV~~~R~--~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~-G~ 168 (435)
+.+|.+|.+. +..|.+.|+|.++-. .|+....+.|-|.+++|-+++=.... +..+..|++|.|. |.
T Consensus 5 ~~kI~dl~~~--~~~v~v~~~V~~~~~~~~~~~~~~~~l~DeTG~I~~t~W~~~~---------~~~~~~G~~V~i~n~~ 73 (109)
T 2kbn_A 5 LTKIVDIVEN--GQWANLKAKVIQLWENTHESISQVGLLGDETGIIKFTIWKNAE---------LPLLEQGESYLLRSVV 73 (109)
T ss_dssp BCCTTTCCST--TCEEEEEEEEEEEEECCCSSEEEEEEEECTTCCEEEEEEGGGC---------CCCCCTTCEEEEEEEE
T ss_pred ceEHHHCCCC--CCcEEEEEEEEEeEcCCCCeEEEEEEEECCCCeEEEEEECccc---------ccccCCCCEEEEEEEE
Confidence 4457777642 778999999988643 34455568899999999999864221 2478999999999 56
Q ss_pred EecCCcccCCCceeEEEEEeEEEEeecC
Q 013865 169 VSVPDVEIKGATQQVEVQIKKLYCVSRA 196 (435)
Q Consensus 169 v~~~~~~~~~~t~~lEi~v~~i~vls~~ 196 (435)
+..- .|.++|.+.+...+.+.
T Consensus 74 v~~~-------~G~~~L~v~~~~~I~~~ 94 (109)
T 2kbn_A 74 VGEY-------NDRFQVQVNKNSSIEKL 94 (109)
T ss_dssp EEEE-------TTEEEEEECSSSEEEEC
T ss_pred EEEE-------CCEEEEEECCceEEEEC
Confidence 6431 25689999887666654
No 87
>1txy_A Primosomal replication protein N; OB fold, dimer, DNA binding protein; 2.00A {Escherichia coli} SCOP: b.40.4.3 PDB: 1woc_A 2pnh_A 4apv_A
Probab=91.35 E-value=2.6 Score=34.25 Aligned_cols=53 Identities=11% Similarity=0.243 Sum_probs=33.4
Q ss_pred EEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCcccCCCceeEEEEEeEEEEeec
Q 013865 135 VQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSR 195 (435)
Q Consensus 135 iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~~~~~~t~~lEi~v~~i~vls~ 195 (435)
++|++-.... + ...+.|++|+.|.|+|.+... ....|.+. ++|++++|..|+.
T Consensus 50 ~~vv~~g~~A----e--~~~~~l~KG~~V~V~G~L~~~-~~~~G~~r-~~v~~~~i~~l~~ 102 (104)
T 1txy_A 50 MPVIVSGHEN----Q--AITHSITVGSRITVQGFISCH-KAKNGLSK-MVLHAEQIELIDS 102 (104)
T ss_dssp EEEEEESSTT----H--HHHTTCCTTCEEEEEEEEEC---------C-CEEEEEEEEEC--
T ss_pred EEEEEEhHHH----H--HHHhhCCCCCEEEEEEEEEec-cCCCCCEE-EEEEEEEEEECcC
Confidence 8888774321 1 234679999999999999854 22223333 9999999998863
No 88
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=90.92 E-value=1.3 Score=42.43 Aligned_cols=79 Identities=14% Similarity=0.151 Sum_probs=55.8
Q ss_pred CEEEEEEEEeeeecCCCceEEEEEEeCCe-EEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCcccCCCceeE
Q 013865 105 QEVLIRGRVHTTRPVGNKLAFVVVRERVS-TVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQV 183 (435)
Q Consensus 105 ~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~-~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~~~~~~t~~l 183 (435)
..|++-|+|.++...+..+ -+.|.|+++ .|-|.+-....... .-...+..|++|.|.|.|..-. +..
T Consensus 72 ~~V~ivG~V~~i~~~~~~~-~~~L~D~TG~~I~~k~W~~~~~~~----~~~~~~~~G~yVrV~G~v~~f~-------g~~ 139 (270)
T 2pi2_A 72 SQVTIVGIIRHAEKAPTNI-VYKIDDMTAAPMDVRQWVDTDDTS----SENTVVPPETYVKVAGHLRSFQ-------NKK 139 (270)
T ss_dssp SEEEEEEEEEEEEECSSEE-EEEEECSSSSCEEEEEECC-----------CCCCCTTCEEEEEEEEEEET-------TEE
T ss_pred EEEEEEEEEEEEEeccceE-EEEEECCCCCEEEEEEEcCcCccc----chhhcCCCCCEEEEEEEEEecC-------Cee
Confidence 3699999999998776454 468999999 89999864321100 0124689999999999986421 357
Q ss_pred EEEEeEEEEeec
Q 013865 184 EVQIKKLYCVSR 195 (435)
Q Consensus 184 Ei~v~~i~vls~ 195 (435)
.|.+..|..+..
T Consensus 140 qi~i~~ir~v~d 151 (270)
T 2pi2_A 140 SLVAFKIMPLED 151 (270)
T ss_dssp EEEEEEEEECSC
T ss_pred EEEEEEEEecCC
Confidence 788888777654
No 89
>3kdf_A Replication protein A 14 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 1quq_B 1l1o_A
Probab=90.66 E-value=1.2 Score=37.59 Aligned_cols=72 Identities=18% Similarity=0.293 Sum_probs=49.5
Q ss_pred CCCCCCEEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCcccCCC
Q 013865 100 GSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGA 179 (435)
Q Consensus 100 ~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~~~~~~ 179 (435)
....|+.|++-|+|.+++..|+ .|+.-..+++.|+|.++...+ ..+ +.+|.|.|+|..
T Consensus 18 ~~fvgk~VrivGkV~~~~~~g~--~~~l~s~Dg~~Vtv~l~~p~~----------~~l--~~~vEViG~V~~-------- 75 (121)
T 3kdf_A 18 AQFIDKPVCFVGRLEKIHPTGK--MFILSDGEGKNGTIELMEPLD----------EEI--SGIVEVVGRVTA-------- 75 (121)
T ss_dssp GGGTTCEEEEEEEEEEECTTSS--EEEEECTTSCEEEEECSSCCS----------SCC--CSEEEEEEEECT--------
T ss_pred HhhCCCeEEEEEEEEEEcCCCC--EEEEEeCCCCEEEEEeCCCCC----------ccc--CcEEEEEEEECC--------
Confidence 3688999999999999998883 343333456788888874211 123 459999999863
Q ss_pred ceeEEEEEeEEEEeec
Q 013865 180 TQQVEVQIKKLYCVSR 195 (435)
Q Consensus 180 t~~lEi~v~~i~vls~ 195 (435)
..+|.+..+..++.
T Consensus 76 --~~tI~~~~~~~fg~ 89 (121)
T 3kdf_A 76 --KATILCTSYVQFKE 89 (121)
T ss_dssp --TSCEEEEEEEECCC
T ss_pred --CCeEEEEEEEecCC
Confidence 23467766666554
No 90
>2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold, transferase; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A*
Probab=90.00 E-value=0.46 Score=54.68 Aligned_cols=79 Identities=13% Similarity=0.188 Sum_probs=47.0
Q ss_pred CCCCEEEEEEEEeeeec----CCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCcccC
Q 013865 102 LKDQEVLIRGRVHTTRP----VGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIK 177 (435)
Q Consensus 102 ~~g~~V~v~GrV~~~R~----~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~~~~ 177 (435)
..|+.|+|+|.|.++|. .|+.++|+.|.|.++.+.+++..+.. .++...|..+.+|.|+|.|...+
T Consensus 1040 ~~g~~v~v~G~v~~~~~~~Tk~G~~maf~tleD~tg~~evvvf~~~~------~~~~~~l~~~~~~~v~G~v~~~~---- 1109 (1220)
T 2hpi_A 1040 PGKPKVLLSGMVEEVVRKPTRSGGMMARFTLSDETGALEVVVFGRAY------EGVSPKLKEDIPLLVLAEVEKGE---- 1109 (1220)
T ss_dssp SSSCEEEEEEEECCC------------CEEEEETTEEEEEC-------------------CTTCEEEEEEEEC-------
T ss_pred cCCCeEEEEEEEEEEEEeecCCCCeEEEEEEEECCCCEEEEEcHHHH------HHHHHHhccCCEEEEEEEEEECC----
Confidence 46889999999998774 45679999999999999999985422 23455689999999999996421
Q ss_pred CCceeEEEEEeEEEEee
Q 013865 178 GATQQVEVQIKKLYCVS 194 (435)
Q Consensus 178 ~~t~~lEi~v~~i~vls 194 (435)
.+.|.+.++.-++
T Consensus 1110 ----~~~l~~~~i~~l~ 1122 (1220)
T 2hpi_A 1110 ----ELRVLAQAVWTLE 1122 (1220)
T ss_dssp ------CEEEEEEEEHH
T ss_pred ----CcEEEEeeeecHH
Confidence 2567788877554
No 91
>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B*
Probab=89.84 E-value=1.4 Score=48.62 Aligned_cols=105 Identities=20% Similarity=0.152 Sum_probs=68.6
Q ss_pred HHHHHHHHHHhhcCCeEEeeCceeeccC----CCCCcceeEe-ccCC-CceeeccChHHHHhhhcc-----C--CCceeE
Q 013865 252 SQVGNIFRQFLLSENFVEIHTPKLIAGS----SEGGSAVFRL-DYKG-QSACLAQSPQLHKQMSIC-----G--DFGRVF 318 (435)
Q Consensus 252 s~i~~~~r~fl~~~gF~EV~TP~l~~~~----~egga~~F~v-~~~~-~~~~L~~Spql~lq~~i~-----~--g~~rVf 318 (435)
..+.+.+|++|...||.|+-|-.+++.. ...+...+.+ |-.. ..-.||+|-=--+=..+. + .--|+|
T Consensus 492 ~~~~~~ir~~L~~~Gf~Evitysfvs~~~~~~l~~~~~~v~L~NPis~d~svLRtsLlpgLL~~l~~N~~r~~~~~vrlF 571 (785)
T 1b7y_B 492 YRKEQRLREVLSGLGFQEVYTYSFMDPEDARRFRLDPPRLLLLNPLAPEKAALRTHLFPGLVRVLKENLDLDRPERALLF 571 (785)
T ss_dssp HHHHHHHHHHHHHHTCEECCCCSEECTTHHHHTTCCCCSCEESSCSSTTSSEECSCSHHHHHHHHHHHHHHSCCSCEEEE
T ss_pred HHHHHHHHHHHHHCCCEEEecCcccCHHHHHhcCCCCCeEEEcCCCchhhhhhhhhhHHHHHHHHHHHhhcCCCCCeEEE
Confidence 4467889999999999999998887542 1111223433 2222 234677654222222222 1 224999
Q ss_pred EEecceecCCCCCCccccccccceeeeecc-----------ccHHHHHHHHHHHHHHH
Q 013865 319 ETGPVFRAEDSYTHRHLCEFTGLDVEMEIK-----------KHYSEVMDIVDRLFVTI 365 (435)
Q Consensus 319 eIgp~FR~E~s~t~rHl~EFt~lE~e~a~~-----------~~~~d~m~~~e~li~~i 365 (435)
|||+||| + .||.++..-+... -++.|+...++.++..+
T Consensus 572 EiG~Vf~-~--------~e~~~lagl~~G~~~~~~w~~~~~vdf~dlKg~le~ll~~l 620 (785)
T 1b7y_B 572 EVGRVFR-E--------REETHLAGLLFGEGVGLPWAKERLSGYFLLKGYLEALFARL 620 (785)
T ss_dssp EEEEEES-S--------SEEEEEEEEEESSCBSCSSSSCCBCSHHHHHHHHHHHHHHH
T ss_pred EEeeeec-c--------ChhhEEEEEEECCCcccccCccCCcCHHHHHHHHHHHHHHc
Confidence 9999999 2 6888888766653 15889999999999865
No 92
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=89.13 E-value=0.67 Score=47.43 Aligned_cols=96 Identities=14% Similarity=0.125 Sum_probs=64.5
Q ss_pred eEEeccccCCCCCCEEEEEEEEeee---e------cCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcE
Q 013865 92 WTVVGALNGSLKDQEVLIRGRVHTT---R------PVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESI 162 (435)
Q Consensus 92 ~~~i~~l~~~~~g~~V~v~GrV~~~---R------~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esi 162 (435)
++.|.+|.+.. ..++|+|||.++ | ..| ++.-++|.|..+.|++++... ..-+|...|..|++
T Consensus 3 ~~~I~~L~p~~--~~w~I~~rV~~k~~ir~~~~~~~~g-~~~~~~L~De~G~I~at~~~~------~~~~f~~~l~eG~v 73 (444)
T 4gop_C 3 IYPIEGLSPYQ--NRWTIKARVTSKSDIRHWSNQRGEG-KLFSVNLLDDSGEIKATGFND------AVDRFYPLLQENHV 73 (444)
T ss_dssp CCCSTTCCTTC--CSCEEEEECCEECCCEEEECSSCEE-EEEEEEEECSSCEEEEEEETH------HHHHHTTTCCTTCE
T ss_pred ceeHHHCCCCC--cceEEEEEEEEccCcceecCCCCCc-eEEEEEEEcCCCEEEEEEeHH------HHHHHHHheecCCE
Confidence 45677776643 357899999853 3 224 777789999999999998732 33456678999999
Q ss_pred EEEEEEEecC-CcccCCCceeEEEEEeEEEEeecC
Q 013865 163 VDVIGVVSVP-DVEIKGATQQVEVQIKKLYCVSRA 196 (435)
Q Consensus 163 V~V~G~v~~~-~~~~~~~t~~lEi~v~~i~vls~~ 196 (435)
+.|.+...++ ...-+...+.+||....-..+.+|
T Consensus 74 y~Is~~~V~~~~~~y~~~~~~~ei~~~~~T~V~~~ 108 (444)
T 4gop_C 74 YLISKARVNIAKKQFSNLQNEYEITFENSTEIEEC 108 (444)
T ss_dssp EEEESCEEEECCGGGCSCCCSEEEEECTTCEEEEC
T ss_pred EEEcCCEEEecCCccccCCCCEEEEEcCCcEEEEc
Confidence 9999754433 222222336699999765555544
No 93
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=88.74 E-value=3.7 Score=33.51 Aligned_cols=89 Identities=10% Similarity=0.139 Sum_probs=60.8
Q ss_pred eEEeccccCCCCCCEEEEEEEEeee-----ecCCC--ceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEE
Q 013865 92 WTVVGALNGSLKDQEVLIRGRVHTT-----RPVGN--KLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVD 164 (435)
Q Consensus 92 ~~~i~~l~~~~~g~~V~v~GrV~~~-----R~~G~--kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~ 164 (435)
+.+|++|.+. ...|.+.|+|.++ +..|+ .++=+.|-|.+++|.+.+=.. .+..|++|.
T Consensus 3 ~~kI~dl~pg--~~~v~v~~~V~~~~~~~~~k~G~~~~v~~~~l~DeTG~I~~tlW~~-------------~l~~Gdvv~ 67 (106)
T 2k75_A 3 LVKIRDVSLS--TPYVSVIGKITGIHKKEYESDGTTKSVYQGYIEDDTARIRISSFGK-------------QLQDSDVVR 67 (106)
T ss_dssp BCCSTTCCTT--CSEEEEEEEEEEEEEEEEEETTEEEEEEEEEEECSSCEEEEEEESS-------------CCCTTEEEE
T ss_pred cEEHHHcCCC--CceEEEEEEEEEccccccccCCCeeEEEEEEEEcCCCeEEEEEEcC-------------ccCCCCEEE
Confidence 3456777542 3457888888764 23453 256678889999988887632 189999999
Q ss_pred EE-EEEecCCcccCCCceeEEEEEeEEEEeecC-CCCCcc
Q 013865 165 VI-GVVSVPDVEIKGATQQVEVQIKKLYCVSRA-AKTPIT 202 (435)
Q Consensus 165 V~-G~v~~~~~~~~~~t~~lEi~v~~i~vls~~-~~lP~~ 202 (435)
|. |.+..- .+.++|.+.+...+.+. ..-|+.
T Consensus 68 i~ng~v~~~-------~g~~~L~v~~~~~I~~~~~~~~~~ 100 (106)
T 2k75_A 68 IDNARVAQF-------NGYLSLSVGDSSRIESVNVNIPLE 100 (106)
T ss_dssp EEEEEEEEE-------TTEEEEEECTTSEEEECCSCCCCS
T ss_pred EEeeEEeEE-------CCEEEEEECCcEEEEECCCCCccc
Confidence 99 766431 25699999887777776 555543
No 94
>3kf8_A Protein STN1; OB fold; 2.40A {Candida tropicalis mya-3404}
Probab=88.23 E-value=3.1 Score=38.66 Aligned_cols=89 Identities=11% Similarity=0.147 Sum_probs=55.5
Q ss_pred CEEEEEEEEeeeecCC-------CceEEEEEEeCCe---EEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCc
Q 013865 105 QEVLIRGRVHTTRPVG-------NKLAFVVVRERVS---TVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDV 174 (435)
Q Consensus 105 ~~V~v~GrV~~~R~~G-------~kl~Fl~Lrd~~~---~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~ 174 (435)
+.|.|.|.|...+-.- ....|+.|-|.++ +|.|.++.... .+.. .. ......|.+|.|+|.+..-..
T Consensus 86 ~~V~IvG~VVg~~~k~~r~~~~~~~~~~l~IDDsSG~~s~i~~k~~~~~~-~~~g-l~-l~~~~~G~iV~VkG~i~~~r~ 162 (220)
T 3kf8_A 86 NQINIFGKIVYEQYKEKEFNGVEESYVILVISDFIGIDSKIRVRLSQEQF-KEVG-LT-LDKKNYGKIVELEGEIYNWYD 162 (220)
T ss_dssp CEEEEEEEEEEEEEECCBCSSCBCCEEEEEEECCCSSSCEEEEEEEHHHH-HTTT-CC-TTSCCTTCEEEEEEEEEECCC
T ss_pred EEEEEEEEEEEEEEEeccccccccceEEEEEeCCCCCCceEEEEecHHHh-hccC-cc-ccccCCCeEEEEEEEEEeecc
Confidence 6899999999987543 1347888989876 58877663210 0000 00 012457999999999974211
Q ss_pred ccC-CCceeEEEEEeEEEEeecC
Q 013865 175 EIK-GATQQVEVQIKKLYCVSRA 196 (435)
Q Consensus 175 ~~~-~~t~~lEi~v~~i~vls~~ 196 (435)
... +..-.-||.++++.+++..
T Consensus 163 ~~~~~~~~~rei~ve~i~vl~~~ 185 (220)
T 3kf8_A 163 SINVSKKPDRELKVSKITVLSHR 185 (220)
T ss_dssp STTTTSCCCEEEEEEEEEEEESS
T ss_pred ccccccccceEEEEEEEEEeccC
Confidence 000 1111469999999999864
No 95
>3vdy_A SSB, single-stranded DNA-binding protein SSBB; OB fold; 2.80A {Bacillus subtilis}
Probab=87.84 E-value=7.3 Score=32.03 Aligned_cols=58 Identities=17% Similarity=0.143 Sum_probs=36.4
Q ss_pred eEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCc-ccCCCc-eeEEEEEeEEEEeecC
Q 013865 133 STVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDV-EIKGAT-QQVEVQIKKLYCVSRA 196 (435)
Q Consensus 133 ~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~-~~~~~t-~~lEi~v~~i~vls~~ 196 (435)
.-++|++-.. ......+.|.+|+.|.|+|.+....- ...|.+ ..+||.+..|.+|++.
T Consensus 50 ~~~~v~~wg~------~Ae~~~~~l~KG~~V~V~G~l~~~~~~d~dG~~~~~~ev~a~~i~~l~~~ 109 (116)
T 3vdy_A 50 DYVNCTLWRK------TAENTALYCQKGSLVGVSGRIQTRSYENEEGVNVYVTEVLADTVRFMDPK 109 (116)
T ss_dssp EEEEEEEEHH------HHHHHHHHCCTTCEEEEEEEEEEEEEC----CCEEEEEEEEEEEEECC--
T ss_pred EEEEEEEECH------HHHHHHHhCCCCCEEEEEEEEEeeEEECCCCCEEEEEEEEEEEEEEccCC
Confidence 3578887632 11123456999999999999974321 122433 3499999999998754
No 96
>3fhw_A Primosomal replication protein N; PRIB BPR162 X-RAY NESG, structural genomics, PSI-2, protein initiative; 1.90A {Bordetella parapertussis} PDB: 3dm4_A 3klw_A
Probab=87.82 E-value=10 Score=31.59 Aligned_cols=56 Identities=11% Similarity=0.235 Sum_probs=39.8
Q ss_pred EEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCcccCCCceeEEEEEeEEEEeecC-CCCC
Q 013865 134 TVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRA-AKTP 200 (435)
Q Consensus 134 ~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~~~~~~t~~lEi~v~~i~vls~~-~~lP 200 (435)
.|+||+-.+ ..+.++.+.+|+.|.|+|.+....+ .| ..++|+++.|..|+.. ..=|
T Consensus 48 ~i~vv~~Gk-------~AE~~~~l~kGs~V~VeGrL~trs~--~G--~kl~l~a~~Ie~l~~~~~~~~ 104 (115)
T 3fhw_A 48 TISAVALGD-------LALLLADTPLGTEMQVQGFLAPARK--DS--VKVKLHLQQARRIAGSMGRDP 104 (115)
T ss_dssp EEEEEEETH-------HHHHHTTCCTTCEEEEEEEEEESST--TC--SSEEEEEEEEEECCCSCCC--
T ss_pred EEEEEEEhH-------HHHhhhccCCCCEEEEEEEEEECCC--CC--CEEEEEEEEEEEcCCCCCCCC
Confidence 388888632 2334578999999999999985432 23 3599999999999776 4444
No 97
>3tqy_A Single-stranded DNA-binding protein; DNA replication, transferase; 2.60A {Coxiella burnetii}
Probab=87.76 E-value=6.8 Score=34.36 Aligned_cols=57 Identities=9% Similarity=0.069 Sum_probs=37.2
Q ss_pred eEEEEEEeeCCCCCcHHHHH-HHhcCCCCcEEEEEEEEecCCc-ccCCCc-eeEEEEEeEEEEeecC
Q 013865 133 STVQCLATVKPDSVSKEMVR-FVRSLSNESIVDVIGVVSVPDV-EIKGAT-QQVEVQIKKLYCVSRA 196 (435)
Q Consensus 133 ~~iQvv~~~~~~~~s~~~~k-~~~~l~~esiV~V~G~v~~~~~-~~~~~t-~~lEi~v~~i~vls~~ 196 (435)
.-+.|++-.. ..+ ....|.+|+.|.|+|.+....- ...+.+ ..+||.+.+|.+|...
T Consensus 56 ~~i~vv~wg~-------~Ae~~~~~l~KG~~V~VeG~L~~~~~~dkdG~~r~~~eV~a~~i~~L~~k 115 (158)
T 3tqy_A 56 EWHRIAFFNR-------LAEIVGEYLRKGSKIYIEGSLRTRKWQDKNGVDRYTTEIIANEMHMLDNR 115 (158)
T ss_dssp EEEEEEEETH-------HHHHHHHHCCTTCEEEEEEEEEEEEEECSSSCEEEEEEEEEEEEEECC--
T ss_pred EEEEEEEEhH-------HHHHHHhhcCCCCEEEEEEEEEeeeEECCCCCEEEEEEEEEeEEEEccCC
Confidence 3467777632 223 3356999999999999874321 123443 3499999999999754
No 98
>2vw9_A Single-stranded DNA binding protein; DNA replication, single-stranded DNA, single-stranded DNA binding protein, oligonucleotide/oligosaccharide binding fold, OB-fold; 2.30A {Helicobacter pylori}
Probab=87.22 E-value=6.5 Score=33.39 Aligned_cols=57 Identities=12% Similarity=0.104 Sum_probs=37.9
Q ss_pred eEEEEEEeeCCCCCcHHHHH-HHhcCCCCcEEEEEEEEecCCc-ccCCCc-eeEEEEEeEEEEeecC
Q 013865 133 STVQCLATVKPDSVSKEMVR-FVRSLSNESIVDVIGVVSVPDV-EIKGAT-QQVEVQIKKLYCVSRA 196 (435)
Q Consensus 133 ~~iQvv~~~~~~~~s~~~~k-~~~~l~~esiV~V~G~v~~~~~-~~~~~t-~~lEi~v~~i~vls~~ 196 (435)
.-+.|++-.. ..+ ..+.|.+||.|.|+|.+....- ...+.+ ..+||.+.+|..|...
T Consensus 49 ~~~~v~~wg~-------~Ae~~~~~l~KG~~V~V~G~L~~~~~~dkdG~~r~~~ev~a~~i~~l~~~ 108 (134)
T 2vw9_A 49 CFIDARLFGR-------TAEIANQYLSKGSSVLIEGRLTYESWMDQTGKKNSRHTITADSLQFMDKK 108 (134)
T ss_dssp EEEEEEEEHH-------HHHHHHHHCCTTCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEECCCC
T ss_pred EEEEEEEEcH-------HHHHHHHhCCCCCEEEEEEEEEeeeEECCCCCEEEEEEEEEEEEEEccCC
Confidence 3577777632 223 3356999999999999874321 122333 3489999999998753
No 99
>4gop_A Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=82.93 E-value=2.6 Score=35.14 Aligned_cols=54 Identities=26% Similarity=0.370 Sum_probs=39.0
Q ss_pred CCCCCEEEEEEEEeeeecCCCceEEEEEEe-CCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEec
Q 013865 101 SLKDQEVLIRGRVHTTRPVGNKLAFVVVRE-RVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSV 171 (435)
Q Consensus 101 ~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd-~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~ 171 (435)
.+.|+.|+|-|+|.+.+. + . +.|.. .++.|.|.++... .+..+.+|.|.|+|..
T Consensus 15 ~~~g~~VrivGkV~~~~g-~---~-~~l~s~d~~~Vtv~l~~~~------------~~~~~~~vEViG~V~~ 69 (114)
T 4gop_A 15 QYVGQTVRIVGKVHKVTG-N---T-LLMQTSDLGNVEIAMTPDS------------DVSSSTFVEVTGKVSD 69 (114)
T ss_dssp GGTTSEEEEEEEEEEEET-T---E-EEEECTTSCEEEEECCSSC------------CGGGCSEEEEEEEECT
T ss_pred hhCCCeEEEEEEEeeeCC-C---E-EEEEeCCCCEEEEEeCCCC------------CcccCcEEEEEEEEcC
Confidence 578999999999999995 3 3 34554 4567777765321 2346889999999964
No 100
>1z9f_A Single-strand binding protein; TM0604, single stranded DNA-binding protein, structural GENO joint center for structural genomics, JCSG; 2.30A {Thermotoga maritima}
Probab=82.82 E-value=13 Score=32.47 Aligned_cols=58 Identities=16% Similarity=0.058 Sum_probs=35.6
Q ss_pred eEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCcc-cCCCc-eeEEEEEeEEEEeecC
Q 013865 133 STVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVE-IKGAT-QQVEVQIKKLYCVSRA 196 (435)
Q Consensus 133 ~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~~-~~~~t-~~lEi~v~~i~vls~~ 196 (435)
.-+.|++-.. ......+.|.+|+.|.|+|.+....-. ..|.+ ..++|.+.+|.+|...
T Consensus 63 ~~~~v~~wg~------~Ae~~~~~l~KG~~V~VeGrL~~~~~~dkdG~~r~~~eV~a~~i~~l~~~ 122 (153)
T 1z9f_A 63 DFFRIVTFGR------LAEFARTYLTKGRLVLVEGEMRMRRWETPTGEKRVSPEVVANVVRFMDRK 122 (153)
T ss_dssp EEEEEEEEHH------HHHHHHHHCCTTCEEEEEEEEEEEC-------CCCEEEEEEEEEEECC--
T ss_pred EEEEEEEECH------HHHHHHhhCCCCCEEEEEEEEEeceEECCCCCEEEEEEEEEEEEEEccCC
Confidence 3477777632 112234569999999999999743211 22333 3489999999999754
No 101
>2pi2_E Replication protein A 14 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_B 2z6k_C
Probab=82.43 E-value=6.7 Score=33.96 Aligned_cols=57 Identities=23% Similarity=0.363 Sum_probs=40.1
Q ss_pred CCCCCCEEEEEEEEeeeecCCCceEEEEEEe-CCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEec
Q 013865 100 GSLKDQEVLIRGRVHTTRPVGNKLAFVVVRE-RVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSV 171 (435)
Q Consensus 100 ~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd-~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~ 171 (435)
....|++|+|-|||.++-..| + .| .|.. ++..|+|.++.. .+ -..+.+|.|.|+|..
T Consensus 39 ~~fvGk~VriVGkV~~~~~~G-~-~~-~l~s~Dg~~VtV~l~~p---L~---------~~~~~~VEViG~V~~ 96 (142)
T 2pi2_E 39 AQFIDKPVCFVGRLEKIHPTG-K-MF-ILSDGEGKNGTIELMEP---LD---------EEISGIVEVVGRVTA 96 (142)
T ss_dssp GGSTTCEEEEEEEEEEECTTS-S-EE-EEECTTSCEEEEECSSC---CS---------SCCCSEEEEEEEECT
T ss_pred HhhCCCEEEEEEEEeEEcCCC-C-EE-EEEeCCCcEEEEEeCCC---CC---------ccCCCEEEEEEEECC
Confidence 468899999999999995556 3 34 4554 467888887631 11 134679999999953
No 102
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=81.23 E-value=12 Score=42.34 Aligned_cols=92 Identities=13% Similarity=0.204 Sum_probs=65.6
Q ss_pred EEeccccCCCCCCEEEEEEEEeee--ec--CCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEE
Q 013865 93 TVVGALNGSLKDQEVLIRGRVHTT--RP--VGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGV 168 (435)
Q Consensus 93 ~~i~~l~~~~~g~~V~v~GrV~~~--R~--~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~ 168 (435)
+.+.++.+ ....|+|.|.|-.+ |. .|+.+.-+.|.|.+++|.|....+. ++..+....|+.|++|.|.|.
T Consensus 8 ~~~~~~~~--~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~td~~~~~~~k~f~~~----~~~~~~~~~~~~g~~~~~~g~ 81 (1041)
T 3f2b_A 8 RRLETIVE--EERRVVVQGYVFDAEVSELKSGRTLLTMKITDYTNSILVKMFSRD----KEDAELMSGVKKGMWVKVRGS 81 (1041)
T ss_dssp BCGGGCCS--CEEEEEEEEEEEEEEEEECTTSCEEEEEEEECSSCEEEEEEECSS----HHHHHHHHTCCTTCEEEEEEE
T ss_pred ccHHHhhc--ccceEEEEEEEEEEEEEEccCCCEEEEEEEEeCCCCEEEEEeecc----cchHHHHhcCCCCCEEEEEEE
Confidence 44555543 24579999999864 42 4767777889999999988776432 333456678999999999999
Q ss_pred EecCCcccCCCceeEEEEEeEEEEeec
Q 013865 169 VSVPDVEIKGATQQVEVQIKKLYCVSR 195 (435)
Q Consensus 169 v~~~~~~~~~~t~~lEi~v~~i~vls~ 195 (435)
+.... -.+++.|.+..|..+.+
T Consensus 82 ~~~d~-----~~~~~~~~~~~~~~~~~ 103 (1041)
T 3f2b_A 82 VQNDT-----FVRDLVIIANDLNEIAA 103 (1041)
T ss_dssp EEEET-----TTTEEEEEEEEEEEECC
T ss_pred EEecc-----CCcceEEEeeeeEEecc
Confidence 97532 12467788888876654
No 103
>3ulp_A Single-strand binding protein; OB-fold, DNA binding, single-stranded DNA, apicoplast, DNA B protein-DNA complex; HET: DNA; 2.10A {Plasmodium falciparum}
Probab=77.85 E-value=29 Score=28.76 Aligned_cols=56 Identities=14% Similarity=0.113 Sum_probs=35.7
Q ss_pred EEEEEEeeCCCCCcHHHHH-HHhcCCCCcEEEEEEEEecCCcc-c--CCCc-eeEEEEEe----EEEEeec
Q 013865 134 TVQCLATVKPDSVSKEMVR-FVRSLSNESIVDVIGVVSVPDVE-I--KGAT-QQVEVQIK----KLYCVSR 195 (435)
Q Consensus 134 ~iQvv~~~~~~~~s~~~~k-~~~~l~~esiV~V~G~v~~~~~~-~--~~~t-~~lEi~v~----~i~vls~ 195 (435)
-+.|++-. +...+ ..+.|.+|+.|.|+|.+....-. . .|.+ ..+||.+. +|.+|+.
T Consensus 55 ~~~v~~wg------~~~Ae~~~~~l~KG~~V~V~G~L~~~~~~d~~~dG~~~~~~ev~a~~~g~~i~~l~~ 119 (124)
T 3ulp_A 55 WHRIVVYD------QNIVDLIDKYLRKGRRVYVQGSLHTRKWHTNDMNSQPKQITEIILSYNKGDLIFLDD 119 (124)
T ss_dssp EEEEEECC------HHHHHHHHHHCCTTCEEEEEEEEEEEEECC----CCCEEEEEEEECTTTCEEEECC-
T ss_pred EEEEEEEE------chHHHHHHhhcCCCCEEEEEEEEEeEEEeCCCCCCCEEEEEEEEEEcCCCcEEEecC
Confidence 47777753 11223 34569999999999998743211 2 3444 34999997 8998865
No 104
>1j6q_A Cytochrome C maturation protein E; all-beta protein, heme delivery,cytochrome C maturation, OB- (oligonucleotide binding)fold; NMR {Shewanella putrefaciens} SCOP: b.40.9.1 PDB: 1lm0_A
Probab=76.70 E-value=22 Score=30.43 Aligned_cols=73 Identities=11% Similarity=0.111 Sum_probs=51.9
Q ss_pred CCCCCEEEEEEEEe--ee-ec-CCCceEEEEEEe-CCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCcc
Q 013865 101 SLKDQEVLIRGRVH--TT-RP-VGNKLAFVVVRE-RVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVE 175 (435)
Q Consensus 101 ~~~g~~V~v~GrV~--~~-R~-~G~kl~Fl~Lrd-~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~~ 175 (435)
...|+.|+|.|.|. ++ |. .|..+.| .|.| ++.+|.|+...-. + ..++-|.-|.|+|.+...+
T Consensus 29 ~~~g~~iRvgG~V~~GSv~r~~~~~~v~F-~vtD~~~~~v~V~Y~Gil----P------DlFrEGqgVVa~G~l~~~g-- 95 (136)
T 1j6q_A 29 PEAGQRIRVGGMVTVGSMVRDPNSLHVQF-AVHDSLGGEILVTYDDLL----P------DLFREGQGIVAQGVLGEDG-- 95 (136)
T ss_dssp SCTTCEEEEEEEECTTCCEECTTSSCEEE-EEECTTCCCEEEEECSCC----T------TSCCSSSEEEEEEEECSTT--
T ss_pred CCCCCEEEEeEEEeCCcEEecCCCCEEEE-EEEcCCCCEEEEEECCCC----C------ccccCCCeEEEEEEECCCC--
Confidence 35789999999996 34 54 3556777 6688 8889999887421 1 2567899999999985422
Q ss_pred cCCCceeEEEEEeEEEEeecC
Q 013865 176 IKGATQQVEVQIKKLYCVSRA 196 (435)
Q Consensus 176 ~~~~t~~lEi~v~~i~vls~~ 196 (435)
-+++++ ||.+|
T Consensus 96 --------~F~A~e--VLaKh 106 (136)
T 1j6q_A 96 --------KLAATE--VLAKH 106 (136)
T ss_dssp --------SEEEEE--EECCC
T ss_pred --------eEEEEE--EEecC
Confidence 145555 88888
No 105
>1sr3_A APO-CCME; OB fold, beta barrel, flexible C-terminal domain, chaperone; NMR {Escherichia coli} SCOP: b.40.9.1
Probab=75.64 E-value=17 Score=31.20 Aligned_cols=75 Identities=15% Similarity=0.140 Sum_probs=53.0
Q ss_pred CCCCCEEEEEEEEe--ee-ec-CCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCccc
Q 013865 101 SLKDQEVLIRGRVH--TT-RP-VGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEI 176 (435)
Q Consensus 101 ~~~g~~V~v~GrV~--~~-R~-~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~~~ 176 (435)
...|+.|+|.|.|. ++ |. .|..+.| .|.|++.+|.|....-. . ..++-|.-|.|+|.+...+
T Consensus 25 ~~~g~~iRvgG~V~~GSv~r~~~~~~v~F-~vtD~~~~v~V~Y~Gil---P-------DlFrEGqgVVa~G~l~~~g--- 90 (136)
T 1sr3_A 25 PEVGQRLRVGGMVMPGSVQRDPNSLKVTF-TIYDAEGSVDVSYEGIL---P-------DLFREGQGVVVQGELEKGN--- 90 (136)
T ss_dssp CCTTSEEEEEEEECTTTCEECSSSSEEEE-EEECSSCEEEEEEESCC---C-------TTCCTTSEEEEEEEECSSS---
T ss_pred CCCCCEEEEeeEEeCCcEEEcCCCCEEEE-EEEeCCcEEEEEECCCC---C-------ccccCCCeEEEEEEECCCC---
Confidence 35689999999998 34 54 2446776 67899999999887421 1 2567899999999985321
Q ss_pred CCCceeEEEEEeEEEEeecC-CC
Q 013865 177 KGATQQVEVQIKKLYCVSRA-AK 198 (435)
Q Consensus 177 ~~~t~~lEi~v~~i~vls~~-~~ 198 (435)
-+.+++ ||.+| ..
T Consensus 91 -------~F~A~e--VLAKhdek 104 (136)
T 1sr3_A 91 -------HILAKE--VLAKHDEN 104 (136)
T ss_dssp -------EEEESS--CBCCSCCC
T ss_pred -------eEEEEE--EEecCCCC
Confidence 255555 88899 54
No 106
>1qvc_A Single stranded DNA binding protein monomer; beta-barrel; 2.20A {Escherichia coli} SCOP: b.40.4.3 PDB: 1kaw_A 1eyg_A 1sru_A
Probab=75.13 E-value=26 Score=29.96 Aligned_cols=84 Identities=17% Similarity=0.150 Sum_probs=50.4
Q ss_pred EEEEEEEEee---eec--CCCceEEEEEE--------------eCCeEEEEEEeeCCCCCcHHHHH-HHhcCCCCcEEEE
Q 013865 106 EVLIRGRVHT---TRP--VGNKLAFVVVR--------------ERVSTVQCLATVKPDSVSKEMVR-FVRSLSNESIVDV 165 (435)
Q Consensus 106 ~V~v~GrV~~---~R~--~G~kl~Fl~Lr--------------d~~~~iQvv~~~~~~~~s~~~~k-~~~~l~~esiV~V 165 (435)
.|.|.|||.. +|. .|..++-+.|- +.+.-+.|++-.. ..+ ..+.|.+||.|.|
T Consensus 7 ~v~L~GrL~~dPelr~t~~G~~v~~f~lA~~~~~~~~~~Ge~~~~t~~~~v~~wg~-------~Ae~~~~~l~KG~~V~V 79 (145)
T 1qvc_A 7 KVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGK-------LAEVASEYLRKGSQVYI 79 (145)
T ss_dssp EEEEEEEESSCCEEECCSSSCCEEEEEEEECCCCSCCSSSSCCCCCEEEEEEEETH-------HHHHHHHHCCTTCEEEE
T ss_pred EEEEEEEeCCCCEEEECCCCCEEEEEEEEEcCCcccccCCcEecccEEEEEEEehH-------HHHHHHHhcCCCCEEEE
Confidence 4677777766 453 24444444442 1234688887632 223 3456999999999
Q ss_pred EEEEecCCcc-cCCCc-eeEEE---EEeEEEEeecC
Q 013865 166 IGVVSVPDVE-IKGAT-QQVEV---QIKKLYCVSRA 196 (435)
Q Consensus 166 ~G~v~~~~~~-~~~~t-~~lEi---~v~~i~vls~~ 196 (435)
+|.+....-. ..+.+ -.+|| .+.+|.+|...
T Consensus 80 ~G~L~~~~~~d~dG~~r~~~ei~a~va~~i~~l~~~ 115 (145)
T 1qvc_A 80 EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGR 115 (145)
T ss_dssp EEEEEEEEECSSSSCEEEEEEEECTTCEEEECCCCS
T ss_pred EEEEEeeEEECCCCcEEEEEEEeeeEeCEEEEccCC
Confidence 9998743211 22333 23788 78888888643
No 107
>2fxq_A Single-strand binding protein; strand beta-sheet extended loops, DNA binding protein; 1.85A {Thermus aquaticus} PDB: 2ihe_A 2cwa_A 2ihf_A
Probab=72.37 E-value=21 Score=33.64 Aligned_cols=85 Identities=18% Similarity=0.203 Sum_probs=53.8
Q ss_pred CEEEEEEEEee---eec--CCCceEEEEEE-e---------CCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEE
Q 013865 105 QEVLIRGRVHT---TRP--VGNKLAFVVVR-E---------RVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVV 169 (435)
Q Consensus 105 ~~V~v~GrV~~---~R~--~G~kl~Fl~Lr-d---------~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v 169 (435)
..|.|.|||.. +|. .|..++-+.|- . ...-+.|++-.. ....+..|.+|+.|.|+|.+
T Consensus 129 N~v~l~G~l~~dpe~r~t~~G~~v~~f~lAv~~~~~g~~~~~t~~~~v~~wg~-------~Ae~~~~l~KG~~V~V~G~l 201 (264)
T 2fxq_A 129 NQVILMGNLTRDPDLRYTPQGTAVVRLGLAVNERRRGQEEERTHFLEVQAWRE-------LAEWASELRKGDGLLVIGRL 201 (264)
T ss_dssp EEEEEEEEESSCCCCEECTTCCEEEEEEEEEECCC-------EEEEEEEEEHH-------HHHHHTTCCTTCEEEEEEEE
T ss_pred EEEEEEEEECCCCEEEECCCCCEEEEEEEEEcCCcCCCCccccEEEEEEEECh-------HHHHhhhcCCCCEEEEEEEE
Confidence 46889999987 454 35454544442 2 123578887632 22333389999999999998
Q ss_pred ecCCcc-cCCCc-eeEEEEEeEEEEeecC
Q 013865 170 SVPDVE-IKGAT-QQVEVQIKKLYCVSRA 196 (435)
Q Consensus 170 ~~~~~~-~~~~t-~~lEi~v~~i~vls~~ 196 (435)
....-. ..|.+ ..+||.+..|.+|...
T Consensus 202 ~~~~~~~~dG~~~~~~ev~a~~i~~l~~~ 230 (264)
T 2fxq_A 202 VNDSWTSSSGERRFQTRVEALRLERPTRG 230 (264)
T ss_dssp EEEEEECTTSCEEEEEEEEEEEEECCCC-
T ss_pred EeeEEECCCCCEEEEEEEEEEEEEECccc
Confidence 643211 22433 3489999999998653
No 108
>2fxq_A Single-strand binding protein; strand beta-sheet extended loops, DNA binding protein; 1.85A {Thermus aquaticus} PDB: 2ihe_A 2cwa_A 2ihf_A
Probab=71.99 E-value=33 Score=32.23 Aligned_cols=57 Identities=12% Similarity=0.072 Sum_probs=35.2
Q ss_pred EEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCcccCCCc-eeEEEEEeEEEEeecC
Q 013865 134 TVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGAT-QQVEVQIKKLYCVSRA 196 (435)
Q Consensus 134 ~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~~~~~~t-~~lEi~v~~i~vls~~ 196 (435)
-+.|++-.. ......+.|.+|+.|.|+|.+....-...|.+ ..++|.+.+|.+|...
T Consensus 53 ~~~v~~~g~------~Ae~~~~~l~KG~~V~V~G~L~~~~~~~dG~~r~~~ev~a~~i~~l~~~ 110 (264)
T 2fxq_A 53 YHRVRLLGR------QAEMWGDLLEKGQLIFVEGRLEYRQWEKDGEKKSEVQVRAEFIDPLEGR 110 (264)
T ss_dssp EEEEEEETH------HHHHHTTTCCTTCEEEEEEEEEEC---------CCEEEEEEEEEECCCC
T ss_pred EEEEEEEch------HHHHHHHhCCCCCEEEEEEEEEeeeEEeCCEEEEEEEEEEEEEEECcCC
Confidence 467777631 11223457999999999999974321112333 2389999999999754
No 109
>1se8_A Single-strand binding protein; DNA binding protein; 1.80A {Deinococcus radiodurans} SCOP: b.40.4.3
Probab=71.29 E-value=31 Score=33.34 Aligned_cols=83 Identities=18% Similarity=0.286 Sum_probs=50.9
Q ss_pred EEEEEEEEee---eec--CCCceEEEEEE------eC-------CeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEE
Q 013865 106 EVLIRGRVHT---TRP--VGNKLAFVVVR------ER-------VSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIG 167 (435)
Q Consensus 106 ~V~v~GrV~~---~R~--~G~kl~Fl~Lr------d~-------~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G 167 (435)
.|.|.|||.. +|. .|..++-+.|- +. ..-+.|++-.. ....+..|.+|+.|.|+|
T Consensus 131 ~V~L~GrL~~dPelr~t~~G~~v~~f~lAv~~~~~d~~Ge~~~~t~~i~vvawg~-------~Ae~~~~l~KG~~V~V~G 203 (301)
T 1se8_A 131 EVLVLGNVTRDPEIRYTPAGDAVLSLSIAVNENYQDRQGQRQEKVHYIDATLWRD-------LAENMKELRKGDPVMIMG 203 (301)
T ss_dssp EEEEEEEECSCCEEEECTTCCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEETH-------HHHHHTTCCTTCEEEEEE
T ss_pred EEEEEEEECcCCEEEECCCCCEEEEEEEEEcCceEcCCCCcccccEEEEEEECCH-------HHHHHHhcCCCCEEEEEE
Confidence 5779999987 564 35444444442 11 12477777632 233333399999999999
Q ss_pred EEecCCcc-cCCCc-eeEEEEEeEEEEeec
Q 013865 168 VVSVPDVE-IKGAT-QQVEVQIKKLYCVSR 195 (435)
Q Consensus 168 ~v~~~~~~-~~~~t-~~lEi~v~~i~vls~ 195 (435)
.+....-. ..+.+ ..+||.+++|.+|..
T Consensus 204 rL~~~~y~dkdG~~r~~~ev~a~~i~~l~~ 233 (301)
T 1se8_A 204 RLVNEGWTDKDGNKRNSTRVEATRVEALAR 233 (301)
T ss_dssp EEEEEECC------CEEEEEEEEEEEECCC
T ss_pred EEeeeeEECCCCcEEEEEEEEEEEEEEecc
Confidence 99743211 22333 349999999999964
No 110
>3lgj_A Single-stranded DNA-binding protein; niaid, CAT scratch fever, rochalimaea, LYME disease, ALS collaborative crystallography, DNA replication; 2.50A {Bartonella henselae}
Probab=68.81 E-value=58 Score=28.64 Aligned_cols=85 Identities=12% Similarity=0.187 Sum_probs=47.9
Q ss_pred EEEEEEEEee---eec--CCCceEEEEEE------e--------CCeEEEEEEeeCCCCCcHHHHHH-HhcCCCCcEEEE
Q 013865 106 EVLIRGRVHT---TRP--VGNKLAFVVVR------E--------RVSTVQCLATVKPDSVSKEMVRF-VRSLSNESIVDV 165 (435)
Q Consensus 106 ~V~v~GrV~~---~R~--~G~kl~Fl~Lr------d--------~~~~iQvv~~~~~~~~s~~~~k~-~~~l~~esiV~V 165 (435)
.|.|.|||-. +|. .|..++-+.|- + .+.-+.|++-. +...+. .+.|.+|+.|.|
T Consensus 25 kV~LiGrL~~DPelr~t~~G~~v~~FslAv~~~~~~~~~Ge~~~~t~~i~vv~wg------~~lAe~~~~~l~KG~~V~V 98 (169)
T 3lgj_A 25 KVMLIGYLGDDPESKTMTSGAEVVNFRMATFESYMNKNTHQKVEKTEWHSVVVFN------PHFAKIALQYLHKGSKVYI 98 (169)
T ss_dssp EEEEEEEESSCCEEEECTTSCEEEEEEEEEEC------------CEEEEEEEECC------HHHHHHHHHHCCTTCEEEE
T ss_pred EEEEEEEECCCCeEEECCCCCEEEEEEEEEcCceecccCCccccccEEEEEEEeC------HHHHHHHHHhCCCCCEEEE
Confidence 5777788775 453 34444433331 1 12346777652 212333 456999999999
Q ss_pred EEEEecCCcc-cCCCc-eeEEEEE----eEEEEeecC
Q 013865 166 IGVVSVPDVE-IKGAT-QQVEVQI----KKLYCVSRA 196 (435)
Q Consensus 166 ~G~v~~~~~~-~~~~t-~~lEi~v----~~i~vls~~ 196 (435)
+|.+....-. ..|.+ ..+||.+ .+|.+|+..
T Consensus 99 eGrL~~r~~~dkdG~~r~~~eIva~~~~~~i~~L~~k 135 (169)
T 3lgj_A 99 EGKLQTRKWQDKNGHDRYTTEIVLPQYKGELHLLDAK 135 (169)
T ss_dssp EEEEEEECC--------CEEEEEECTTCCEEEEECC-
T ss_pred EEEEEEEEEECCCCCEEEEEEEEEEeccCcEEEccCC
Confidence 9999743221 22333 3488887 589998754
No 111
>4gs3_A Single-stranded DNA-binding protein; primosome, oligonucleotide/oligosaccharide binding domain, D binding protein; 1.09A {Thermoanaerobacter tengcongensis}
Probab=68.12 E-value=44 Score=27.29 Aligned_cols=80 Identities=16% Similarity=0.127 Sum_probs=46.9
Q ss_pred CEEEEEEEEee---eec--CCCceEEEEEE-------eCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEec-
Q 013865 105 QEVLIRGRVHT---TRP--VGNKLAFVVVR-------ERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSV- 171 (435)
Q Consensus 105 ~~V~v~GrV~~---~R~--~G~kl~Fl~Lr-------d~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~- 171 (435)
..|.+.|||.+ .|- .|. .|+.+. +....|-|++...... . -.+.+|+.|.|.|.+..
T Consensus 12 N~V~LiGrl~~dpelr~t~~G~--~v~~f~lAV~R~~~~~Dfi~ivvw~klAe-------~-~~~~kG~~v~v~G~lrsy 81 (107)
T 4gs3_A 12 NTVTLVGKVFTPLEFSHELYGE--KFFNFILEVPRLSETKDYLPITISNRLFE-------G-MNLEVGTRVKIEGQLRSY 81 (107)
T ss_dssp SCEEEEEEECSCCEEEEEETTE--EEEEEEEEEECTTSCEEEEEEEEEGGGST-------T-CCCCTTCEEEEEEEEEEE
T ss_pred CEEEEEEEECCCceEEEecCCc--EEEEEEEEeCCCCCCCcEEEEEEEhHHhh-------H-HhhcCCCEEEEEEEEEec
Confidence 35788888865 232 353 343333 2345788888754221 1 13569999999999852
Q ss_pred CCc-ccCCCc-eeEEEEEeEEEEee
Q 013865 172 PDV-EIKGAT-QQVEVQIKKLYCVS 194 (435)
Q Consensus 172 ~~~-~~~~~t-~~lEi~v~~i~vls 194 (435)
... ...|.. --+||.+.+|..|+
T Consensus 82 ~~~~~~dG~~R~v~eV~a~~i~fld 106 (107)
T 4gs3_A 82 NRKSPEEGKNKLILTVFARDISVVP 106 (107)
T ss_dssp ECC--------EEEEEEEEEEEEEC
T ss_pred ceEECCCCCEEEEEEEEEEEEEEcc
Confidence 211 112322 34999999999885
No 112
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=67.95 E-value=2.8 Score=46.15 Aligned_cols=66 Identities=18% Similarity=0.164 Sum_probs=45.3
Q ss_pred ccCCCCCCEEEEEEEEeeeec--CC-CceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCC--CcEEEEEEEEec
Q 013865 98 LNGSLKDQEVLIRGRVHTTRP--VG-NKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSN--ESIVDVIGVVSV 171 (435)
Q Consensus 98 l~~~~~g~~V~v~GrV~~~R~--~G-~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~--esiV~V~G~v~~ 171 (435)
+.+-..|+.|+|.|.|.+... .| .+..=+.+.|+++.++++...... . .+.++. |..+.|.|++..
T Consensus 159 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~d~~~~~~~~~f~~~~-~-------~~~~~~~~g~~~~~~G~~~~ 229 (780)
T 1gm5_A 159 LNDLLPGEKVTTQGKIVSVETKKFQNMNILTAVLSDGLVHVPLKWFNQDY-L-------QTYLKQLTGKEVFVTGTVKS 229 (780)
T ss_dssp SSCCCSSCCCEEEECCCCCEEEECSSCEEEEEEECCSSCCEEEEECSCCT-T-------HHHHHTTCSSCEEEEEEECS
T ss_pred HHHcCCCCEEEEEEEEEEEEeecCCCCeEEEEEEEECCceEEEEEECcHH-H-------HhhCccCCCCEEEEEEEEEE
Confidence 334456889999999987532 23 233445677988999999874321 1 235667 999999999965
No 113
>1se8_A Single-strand binding protein; DNA binding protein; 1.80A {Deinococcus radiodurans} SCOP: b.40.4.3
Probab=67.20 E-value=42 Score=32.38 Aligned_cols=57 Identities=14% Similarity=0.062 Sum_probs=36.2
Q ss_pred EEEEEEeeCCCCCcHHHHHHHhc-CCCCcEEEEEEEEecCCc-ccCCCc-eeEEEEEeEEEEeecC
Q 013865 134 TVQCLATVKPDSVSKEMVRFVRS-LSNESIVDVIGVVSVPDV-EIKGAT-QQVEVQIKKLYCVSRA 196 (435)
Q Consensus 134 ~iQvv~~~~~~~~s~~~~k~~~~-l~~esiV~V~G~v~~~~~-~~~~~t-~~lEi~v~~i~vls~~ 196 (435)
-+.|++-.. ......+. |.+|+.|.|+|.+....- ...+.+ -.+||.+.+|.+|...
T Consensus 53 ~i~vv~~g~------~Ae~~~~~~l~KG~~V~VeG~L~~r~~~dkdG~~r~~~ev~a~~i~~l~~~ 112 (301)
T 1se8_A 53 YHRVSILGK------PAEWQAERNLKGGDAVVVEGTLEYRQWEAPEGGKRSAVNVKALRMEQLGTQ 112 (301)
T ss_dssp EEEEEEESH------HHHHHHHTCCCTTCEEEEEEEEEEEEEC-----CEEEEEEEEEEEEECSSC
T ss_pred EEEEEEEcH------HHHHHHhhCCCCCCEEEEEEEEEeeeEECCCCCEEEEEEEEEeEEEEeecc
Confidence 477777632 22223466 899999999999874221 122333 2489999999999754
No 114
>3k8a_A Putative primosomal replication protein; beta-barrel, OB-fold, DNA binding protein; 2.70A {Neisseria gonorrhoeae fa 1090}
Probab=64.36 E-value=55 Score=26.37 Aligned_cols=47 Identities=6% Similarity=0.027 Sum_probs=34.4
Q ss_pred EEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCcccCCCceeEEEEEeEEEEe
Q 013865 135 VQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCV 193 (435)
Q Consensus 135 iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~~~~~~t~~lEi~v~~i~vl 193 (435)
++|++-.+ ..+ +..|.+|+.|.|+|.+..... ++ ..+.||++.|+.+
T Consensus 55 i~vv~~gk-------~Ae-~~~l~KG~~v~veGrL~~rs~--~~--~~lvlhi~~i~~i 101 (103)
T 3k8a_A 55 IPARILGR-------QAE-EWQYRQGDCATVEGFLAQKSR--RS--LMPMLRIQNIKEY 101 (103)
T ss_dssp EEEEEEHH-------HHH-HSTTCTTCEEEEEEEEEESSS--SC--CCEEEEEEEEEEC
T ss_pred EEEEEEhH-------Hhh-hhccCCCCEEEEEEEEEECcc--CC--ccEEEEEEEEEEc
Confidence 77777632 234 566999999999999975432 12 3699999999876
No 115
>3eiv_A Single-stranded DNA-binding protein 2; DNA damage, DNA repair, DNA replication, phosphoprotein; 2.14A {Streptomyces coelicolor}
Probab=64.10 E-value=85 Score=28.46 Aligned_cols=54 Identities=17% Similarity=0.150 Sum_probs=32.8
Q ss_pred eEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCcc-cCCCc-eeEEEEEeEEEE
Q 013865 133 STVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVE-IKGAT-QQVEVQIKKLYC 192 (435)
Q Consensus 133 ~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~~-~~~~t-~~lEi~v~~i~v 192 (435)
.-+.|++-.+ ......+.|++|+.|.|+|.+....-. +.+.+ ..+||.+++|..
T Consensus 53 ~wi~Vvawgk------lAE~v~~~L~KG~~V~VeGrL~~rswedkdG~kr~~~eVvA~~Ig~ 108 (199)
T 3eiv_A 53 LFLTCSVWRQ------AAENVAESLQRGMRVIVQGRLKQRSYEDREGVKRTVYELDVDEVGA 108 (199)
T ss_dssp EEEEEEEETH------HHHHHHHHCCTTCEEEEEEEEEEEC--------CCEEEEEEEEEEE
T ss_pred EEEEEEEEhH------HHHHHHHhcCCCCEEEEEEEEEeeEEECCCCCEEEEEEEEEEEEec
Confidence 4577777632 112234579999999999999743211 22333 348999998875
No 116
>3pco_B Phenylalanyl-tRNA synthetase, beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=63.92 E-value=7.8 Score=42.69 Aligned_cols=111 Identities=11% Similarity=0.058 Sum_probs=66.5
Q ss_pred HHHHHHHHhhcCCeEEeeCceeeccCC----CCCcceeEe-ccC-CCceeeccChHHHHhhhc----cCCC--ceeEEEe
Q 013865 254 VGNIFRQFLLSENFVEIHTPKLIAGSS----EGGSAVFRL-DYK-GQSACLAQSPQLHKQMSI----CGDF--GRVFETG 321 (435)
Q Consensus 254 i~~~~r~fl~~~gF~EV~TP~l~~~~~----egga~~F~v-~~~-~~~~~L~~Spql~lq~~i----~~g~--~rVfeIg 321 (435)
..+.+|+.|...||.||-|-.+++... .++.+...+ |-. ..--.||+|-=--+=..+ .-+. =|+||||
T Consensus 494 ~~~~~r~~l~~~G~~Evitysf~~~~~~~~~~~~~~~v~l~NPis~e~svmRtsLlpgLL~~~~~N~~r~~~~v~lFEiG 573 (795)
T 3pco_B 494 SLKRVKTLLNDKGYQEVITYSFVDPKVQQMIHPGVEALLLPSPISVEMSAMRLSLWTGLLATVVYNQNRQQNRVRIFESG 573 (795)
T ss_dssp CHHHHHHHHHHTTCEECCCCSEECHHHHHHHSSSCCCCBCSSCSCSTTCEECSSSHHHHHHHHHHHHTSSCCCCEEEEEE
T ss_pred HHHHHHHHHHHCCCeeeeccCcCCHHHHHhhCCCCCeEEEcCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCccEEEee
Confidence 345789999999999999999985421 111222222 222 234578877433322222 2233 3899999
Q ss_pred cceecCCCCCCccccccccceeeeecc------------ccHHHHHHHHHHHHHHH
Q 013865 322 PVFRAEDSYTHRHLCEFTGLDVEMEIK------------KHYSEVMDIVDRLFVTI 365 (435)
Q Consensus 322 p~FR~E~s~t~rHl~EFt~lE~e~a~~------------~~~~d~m~~~e~li~~i 365 (435)
+||+..+. +..+..|..+|-.-++.. -++.|+...+|.++..+
T Consensus 574 ~Vf~~~~~-~~~~~~e~~~la~~~~G~~~~~~w~~~~~~~dF~dlKg~ve~ll~~l 628 (795)
T 3pco_B 574 LRFVPDTQ-APLGIRQDLMLAGVICGNRYEEHWNLAKETVDFYDLKGDLESVLDLT 628 (795)
T ss_dssp EEEEECTT-SSTTEEEEEEEEEEEESBSSCSCSSSCCCBCCHHHHHHHHHHHTTTS
T ss_pred eEEecCCC-cccCcchhheEEEEEECCCcccccccCCCCCCHHHHHHHHHHHHHHc
Confidence 99987552 223444555555543321 14889999999888754
No 117
>3pgz_A Single-stranded DNA-binding protein; ssgcid, single-strand binding protein, structural genomics center for infectious disease; 2.10A {Bartonella henselae}
Probab=61.44 E-value=76 Score=28.67 Aligned_cols=57 Identities=14% Similarity=0.194 Sum_probs=35.8
Q ss_pred EEEEEEeeCCCCCcHHHHHHH-hcCCCCcEEEEEEEEecCCc-ccCCCc-eeEEEEEe----EEEEeecC
Q 013865 134 TVQCLATVKPDSVSKEMVRFV-RSLSNESIVDVIGVVSVPDV-EIKGAT-QQVEVQIK----KLYCVSRA 196 (435)
Q Consensus 134 ~iQvv~~~~~~~~s~~~~k~~-~~l~~esiV~V~G~v~~~~~-~~~~~t-~~lEi~v~----~i~vls~~ 196 (435)
-+.|++-. +...+.+ +.|.+|+.|.|+|.+....- ...+.+ ..+||.+. +|.+|...
T Consensus 75 wi~Vvawg------k~lAe~~~~yL~KGs~V~VeGrL~trswedkdG~kr~~tEVva~~~~~~i~fL~sk 138 (193)
T 3pgz_A 75 WHNIVIFN------ENLVKVVEQYLKKGSKIYIEGQLQTRKWQDQNGNDRYTTEIVLQKYRGELQMLDGR 138 (193)
T ss_dssp EEEEEECC------HHHHHHHHHHCCTTCEEEEEEEEEEEEEECTTSCEEEEEEEEECTTCCEEEECC--
T ss_pred EEEEEEEC------HHHHHHHHhhcCCCCEEEEEEEEEEEEeECCCCCEEEEEEEEEEeccCceEECcCC
Confidence 46777652 2223344 56999999999999874321 123443 34899998 68888653
No 118
>3mxn_B RECQ-mediated genome instability protein 2; bloom syndrome, helicase, RMI, topoisomerase, replication PR replication; 1.55A {Homo sapiens} PDB: 4day_B 3nbh_B
Probab=60.86 E-value=70 Score=27.71 Aligned_cols=74 Identities=22% Similarity=0.223 Sum_probs=50.3
Q ss_pred CCEEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCcccCCCceeE
Q 013865 104 DQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQV 183 (435)
Q Consensus 104 g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~~~~~~t~~l 183 (435)
=..||+.|.|-.. ..| . +.|+|+++++=+-.-.+ +.+. ...+..|..|.|.|.+... +.+-
T Consensus 58 ~s~VWmQG~VV~~-~~g-~---~~LdDgTG~~~v~g~~~---vp~g----~p~l~~G~YVMV~G~v~~~-------s~eP 118 (150)
T 3mxn_B 58 LAAVWMQGRVVMA-DRG-E---ARLRDPSGDFSVRGLER---VPRG----RPCLVPGKYVMVMGVVQAC-------SPEP 118 (150)
T ss_dssp CSEEEEEEEEEEE-ETT-E---EEEEETTEEEEEECGGG---SCCC----SCCCSTTCEEEEEEEEEEC-------SSSC
T ss_pred eEEEEEEeEEEEe-CCC-e---EEEECCCceEEEeeccc---cCCC----CcccCCCCEEEEEEEEEec-------CCCc
Confidence 3579999999997 445 3 68999998755422211 1110 1247899999999998742 2356
Q ss_pred EEEEeEEEEeecC
Q 013865 184 EVQIKKLYCVSRA 196 (435)
Q Consensus 184 Ei~v~~i~vls~~ 196 (435)
.|.+.++.=||..
T Consensus 119 ~i~AvKm~DLS~~ 131 (150)
T 3mxn_B 119 CLQAVKMTDLSDN 131 (150)
T ss_dssp EEEEEEEEECCSC
T ss_pred eEEEEEeeeCCCC
Confidence 7888888888764
No 119
>1wjj_A Hypothetical protein F20O9.120; DNA-binding protein-related, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.40.4.3
Probab=58.75 E-value=42 Score=28.92 Aligned_cols=89 Identities=9% Similarity=0.053 Sum_probs=58.7
Q ss_pred cceEEeccccCCCCCCEEEEEEEEeeee----------cCC--------CceEEEEEEeCCeEEEEEEeeCCCCCcHHHH
Q 013865 90 REWTVVGALNGSLKDQEVLIRGRVHTTR----------PVG--------NKLAFVVVRERVSTVQCLATVKPDSVSKEMV 151 (435)
Q Consensus 90 ~~~~~i~~l~~~~~g~~V~v~GrV~~~R----------~~G--------~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~ 151 (435)
..+.+|++|.+.. .-|+|.|+|-.+- ..| ..++=+.|-|.+++|-.++=..
T Consensus 14 p~~~kI~dL~pg~--~~v~l~~kVl~~~~v~~~~~~~R~dG~~~~~~r~~~V~~~lVgDeTG~I~ftlW~e--------- 82 (145)
T 1wjj_A 14 PVFVKVEQLKPGT--TGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPSRIVECLIGDETGCILFTARND--------- 82 (145)
T ss_dssp CSSCCSTTCCTTC--CCEEEEEEEEEEEECCSSSSCCSCSSCCSSCCCCCCCEEEEEECSSCEEEEEECTT---------
T ss_pred ccceEHHHcCCCC--CceEEEEEEEEcccccccccccccCCccccccCCceEEEEEEEcCCcEEEEEEecC---------
Confidence 3567888887643 3478888886542 123 1577778889999988776521
Q ss_pred HHHhcCCCCcEEEEEEEEecCCcccCCCceeEEEEEeEEEEeecC
Q 013865 152 RFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRA 196 (435)
Q Consensus 152 k~~~~l~~esiV~V~G~v~~~~~~~~~~t~~lEi~v~~i~vls~~ 196 (435)
.+..|..||+|.+.+....- -.|.++|.+.+.--+.+.
T Consensus 83 -~~~~l~~Gd~v~i~na~v~~------~~G~~~L~vgk~g~Ie~~ 120 (145)
T 1wjj_A 83 -QVDLMKPGATVILRNSRIDM------FKGTMRLGVDKWGRIEAT 120 (145)
T ss_dssp -HHHHTCTTCEEEEEEEEEEE------ETTEEEEEECTTCCBCCC
T ss_pred -CcCcCCCCCEEEEeccEEEe------ECCEEEEEECCCEEEEEC
Confidence 23458899999999854321 124688988776555544
No 120
>3afp_A Single-stranded DNA-binding protein; OB-fold, quaternary structure and stability, changes on oligomerisation, water-bridges, DNA damage; 2.05A {Mycobacterium leprae} PDB: 3afq_A 1ue1_A 1ue5_A 1ue6_A 1ue7_A 1x3e_A 1x3f_A 1x3g_A 3a5u_A*
Probab=53.96 E-value=1.1e+02 Score=26.65 Aligned_cols=52 Identities=21% Similarity=0.265 Sum_probs=31.8
Q ss_pred eEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCcc-cCCCc-eeEEEEEeEE
Q 013865 133 STVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVE-IKGAT-QQVEVQIKKL 190 (435)
Q Consensus 133 ~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~~-~~~~t-~~lEi~v~~i 190 (435)
.-+.|++-.+ ......+.|++|+.|.|+|.+....-. ..+.+ ..+||.+.+|
T Consensus 53 ~~~~v~~wg~------~Ae~~~~~l~KG~~V~VeGrL~~~~~~dkdG~~r~~~ev~a~~v 106 (168)
T 3afp_A 53 LFLRCNIWRE------AAENVAESLTRGARVIVTGRLKQRSFETREGEKRTVVEVEVDEI 106 (168)
T ss_dssp EEEEEEEEHH------HHHHHHHHCCTTCEEEEEEEEEEEEEC-CCSCCEEEEEEEEEEE
T ss_pred EEEEEEEehH------HHHHHHHhCCCCCEEEEEEEEEeeeEECCCCcEEEEEEEEEEEe
Confidence 3577877632 112234679999999999998743211 22333 2378877754
No 121
>4dam_A Single-stranded DNA-binding protein 1; OB-fold; 1.70A {Streptomyces coelicolor}
Probab=50.97 E-value=1.1e+02 Score=25.55 Aligned_cols=53 Identities=15% Similarity=0.072 Sum_probs=32.5
Q ss_pred eEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCcccCCCc-eeEEEEEeEEE
Q 013865 133 STVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGAT-QQVEVQIKKLY 191 (435)
Q Consensus 133 ~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~~~~~~t-~~lEi~v~~i~ 191 (435)
.-+.|++-.+ ......+.|.+|+.|.|+|.+....-...|.+ ..+||.+..|-
T Consensus 63 ~w~~v~~wg~------~Ae~~~~~l~KG~~V~VeGrL~~~~~dkdG~~r~~~ev~a~~vg 116 (128)
T 4dam_A 63 NFFTVWANRQ------LATNASGSLAVGDPVVVQGRLKVRTDVREGQSRTSADIDAVAIG 116 (128)
T ss_dssp EEEEEEEEHH------HHHHHHHHCCTTCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEE
T ss_pred EEEEEEEEcH------HHHHHHHhcCCCCEEEEEEEEEEeEEcCCCCEEEEEEEEEEEEE
Confidence 3577777632 11123467999999999999864322223333 33788877764
No 122
>3ull_A DNA binding protein; DNA replication, mitochondrion, transit peptide; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 PDB: 1s3o_A* 2dud_A
Probab=50.81 E-value=21 Score=29.96 Aligned_cols=43 Identities=9% Similarity=0.138 Sum_probs=29.6
Q ss_pred HhcCCCCcEEEEEEEEecCCc-ccCCCc-eeEEEEEeEEEEeecC
Q 013865 154 VRSLSNESIVDVIGVVSVPDV-EIKGAT-QQVEVQIKKLYCVSRA 196 (435)
Q Consensus 154 ~~~l~~esiV~V~G~v~~~~~-~~~~~t-~~lEi~v~~i~vls~~ 196 (435)
.+.|.+|+.|.|+|.+....- ...|.+ ..+||.+..|.+|++.
T Consensus 83 ~~~l~KG~~V~V~G~L~~~~~~d~dG~~r~~~ev~a~~i~~l~~~ 127 (132)
T 3ull_A 83 YQYVKKGSRIYLEGKIDYGEYMDKNNVRRQATTIIADNIIFLSDQ 127 (132)
T ss_dssp HHHCCTTCEEEEEEEEECCCEESSSSEECCCEEEEEEEEECC---
T ss_pred HhhCCCCCEEEEEEEEEeeEEECCCCCEEEEEEEEEEEEEEccCC
Confidence 456999999999999974321 122333 2499999999998753
No 123
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=47.44 E-value=53 Score=24.70 Aligned_cols=52 Identities=19% Similarity=0.181 Sum_probs=36.3
Q ss_pred CCCEEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEE
Q 013865 103 KDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIG 167 (435)
Q Consensus 103 ~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G 167 (435)
.|+. +.|.|.++...| +|++|.++ +.+++..+.- +.. +...+..||.|.|.=
T Consensus 5 ~G~i--v~G~V~~v~~~G---~fV~l~~~---~~Gllh~sel--~~~---~~~~~~~Gd~V~v~V 56 (80)
T 2k52_A 5 PGKF--YKGVVTRIEKYG---AFINLNEQ---VRGLLRPRDM--ISL---RLENLNVGDEIIVQA 56 (80)
T ss_dssp TTCE--EEEEEEEEETTE---EEEEEETT---EEEEECGGGC--SSC---CGGGCCTTCEEEEEE
T ss_pred CCCE--EEEEEEEEeCCE---EEEEECCC---CEEEEEHHHC--Ccc---cceeeCCCCEEEEEE
Confidence 3554 789999999988 89999653 6788875432 111 114689999988763
No 124
>3koj_A Uncharacterized protein YCF41; single-strand binding protein family, PF00436, SNR59A, NESG, structural genomics, PSI-2; 1.90A {Synechococcus elongatus pcc 6301}
Probab=46.74 E-value=1.2e+02 Score=24.69 Aligned_cols=80 Identities=13% Similarity=0.160 Sum_probs=44.6
Q ss_pred CEEEEEEEEee---eecC--C-CceEEEEEE-------eCCeEEEEEEeeCCCCCcHHHHHH-HhcCCCCcEEEEEEEEe
Q 013865 105 QEVLIRGRVHT---TRPV--G-NKLAFVVVR-------ERVSTVQCLATVKPDSVSKEMVRF-VRSLSNESIVDVIGVVS 170 (435)
Q Consensus 105 ~~V~v~GrV~~---~R~~--G-~kl~Fl~Lr-------d~~~~iQvv~~~~~~~~s~~~~k~-~~~l~~esiV~V~G~v~ 170 (435)
..|.+-|||.. +|-. | ..++=+.|- +...-+.|++-.+ ..+. .+.|.+||.|.|+|.+.
T Consensus 12 ~~v~LiGrL~~DPelR~t~~g~~~va~f~lAv~~~~~~~~t~fi~vv~wgk-------~AE~~~~yl~KG~~V~VeGrL~ 84 (108)
T 3koj_A 12 NSCILQATVVEAPQLRYAQDNQTPVAEMVVQFPGLSSKDAPARLKVVGWGA-------VAQELQDRCRLNDEVVLEGRLR 84 (108)
T ss_dssp EEEEEEEEEEEEEEEEECTTSSSEEEEEEEEECC-----CCEEEEEEEETH-------HHHHHHHHCCTTCEEEEEEEEE
T ss_pred ceEEEEEEECCCCEEEEeCCCCEEEEEEEEEECCcccCCCcEEEEEEEEhH-------HHHHHHHhCCCCCEEEEEEEEE
Confidence 35777777765 4532 3 233333332 1344688887632 2233 35699999999999997
Q ss_pred cCCcc-cCCCc-eeEEEEEeEEE
Q 013865 171 VPDVE-IKGAT-QQVEVQIKKLY 191 (435)
Q Consensus 171 ~~~~~-~~~~t-~~lEi~v~~i~ 191 (435)
...-. ..|.+ ...||.+++|+
T Consensus 85 ~r~y~~kdG~kr~~tEVva~~i~ 107 (108)
T 3koj_A 85 INSLLKPDGNREKQTELTVTRVH 107 (108)
T ss_dssp EEC--------CCEEEEEEEEEE
T ss_pred eeeEECCCCCEEEEEEEEEEEEE
Confidence 43211 12333 34888888875
No 125
>1ou8_A Stringent starvation protein B homolog; peptide-binding pocket, protein-peptide complex, homodimer, transport protein; 1.60A {Haemophilus influenzae} SCOP: b.136.1.1 PDB: 1zsz_A 1twb_A 1zsz_B
Probab=37.25 E-value=32 Score=28.40 Aligned_cols=54 Identities=20% Similarity=0.330 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHhhcCCeEEeeCceeeccCCCCCcceeEecc-CCCceeeccChHHHHhh
Q 013865 250 IQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDY-KGQSACLAQSPQLHKQM 308 (435)
Q Consensus 250 ~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~-~~~~~~L~~Spql~lq~ 308 (435)
.|--+++++.+|+.++|| ||.|.-.+.-+|..+- ..| .+...-|-+||+-....
T Consensus 8 ~rPYLiRA~yeWi~DN~~----TP~l~Vda~~~~v~VP-~~~v~dGqIvLNIsp~Av~~L 62 (111)
T 1ou8_A 8 KRPYLLRAYYDWLVDNSF----TPYLVVDATYLGVNVP-VEYVKDGQIVLNLSASATGNL 62 (111)
T ss_dssp SHHHHHHHHHHHHHHTTC----CEEEEEETTSTTCBCC-GGGCBTTEEEEECSTTTCEEE
T ss_pred CccHHHHHHHHHHHhCCC----cceEEEEcCCCCCcCC-HHHhcCCEEEEECChhhhcCe
Confidence 366789999999999999 9999866553444421 123 45678888888766653
No 126
>2kqr_A Asparaginyl-tRNA synthetase, cytoplasmic; aminoacyl-tRNA synthetase, ATP-binding, ligas nucleotide-binding, protein biosynthesis; NMR {Brugia malayi}
Probab=37.18 E-value=12 Score=31.19 Aligned_cols=23 Identities=30% Similarity=0.290 Sum_probs=20.3
Q ss_pred cccChhHHHHHHHHHHHHHHHHH
Q 013865 19 QSISKKAAKKEAAKKAKEERRKE 41 (435)
Q Consensus 19 ~~~sk~~lkk~~k~~~k~~kka~ 41 (435)
+++||++|||..|..+.+.+|++
T Consensus 54 ~~~skSaLKKa~K~~~~~~kK~~ 76 (113)
T 2kqr_A 54 EAASKTALKKSWKRYEQEMLKNE 76 (113)
T ss_dssp EECCHHHHHHHHHHHHHHHHHTC
T ss_pred ccccHHHHHHHHHHHHHHHHHHH
Confidence 56899999999999999988865
No 127
>1yfn_A Stringent starvation protein B; protein-peptide complex, SSPB, RSEA, protein binding; 1.80A {Escherichia coli} SCOP: b.136.1.1 PDB: 1ox9_A 1ox8_A
Probab=36.70 E-value=36 Score=28.46 Aligned_cols=55 Identities=20% Similarity=0.379 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHhhcCCeEEeeCceeeccCCCCCcceeEecc-CCCceeeccChHHHHhhh
Q 013865 250 IQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDY-KGQSACLAQSPQLHKQMS 309 (435)
Q Consensus 250 ~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~-~~~~~~L~~Spql~lq~~ 309 (435)
.|--+++++.+|+.++|| ||.|.-.+.-+|..+- ..| .+...-|-+||+-.....
T Consensus 9 ~rPYLiRA~yeWi~DN~~----TP~l~Vda~~~~v~VP-~~~v~dGqIVLNIsp~Av~~L~ 64 (118)
T 1yfn_A 9 RRPYLLRAFYEWLLDNQL----TPHLVVDVTLPGVQVP-MEYARDGQIVLNIAPRAVGNLE 64 (118)
T ss_dssp SHHHHHHHHHHHHHHTTC----CEEEEEETTSTTCBSC-GGGCBTTEEEEECSGGGCEEEE
T ss_pred CccHHHHHHHHHHHcCCC----cceEEEEcCCCCccCC-HHHhcCCEEEEECChhhhcCeE
Confidence 356789999999999999 9999865553454421 123 356788888888766643
No 128
>3en2_A Probable primosomal replication protein N; PRIB RSR213C NESG X-RAY Q8XZT7 Q8XZT7_ralso, structural genomics, PSI-2; 2.30A {Ralstonia solanacearum}
Probab=34.32 E-value=1.5e+02 Score=23.68 Aligned_cols=48 Identities=13% Similarity=0.299 Sum_probs=31.2
Q ss_pred eEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCcccCCCceeEEEEEeEEE
Q 013865 133 STVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLY 191 (435)
Q Consensus 133 ~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~~~~~~t~~lEi~v~~i~ 191 (435)
..|+||+-.+ ..+.+..+.+|+.|.|+|.+...... ...+=++|+.+.
T Consensus 48 f~i~vv~wGk-------~AE~~~~~~kGs~V~VeGrL~trs~~----s~~lvlhi~~~~ 95 (101)
T 3en2_A 48 FSIEALGAGK-------MASVLDRIAPGTVLECVGFLARKHRS----SKALVFHISGLE 95 (101)
T ss_dssp EEEEEEEETH-------HHHHHTTSCTTCEEEEEEEEEECC--------CEEEEEEEEE
T ss_pred EEEEEEEEhH-------HHHHHhhcCCCCEEEEEEEEEeCcCC----CCeeEEEEeccc
Confidence 3488888632 33455678999999999999743211 134667777664
No 129
>1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5
Probab=34.26 E-value=50 Score=29.44 Aligned_cols=56 Identities=14% Similarity=0.218 Sum_probs=33.0
Q ss_pred CCCEEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHH-hcCCCCcEEEEE
Q 013865 103 KDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFV-RSLSNESIVDVI 166 (435)
Q Consensus 103 ~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~-~~l~~esiV~V~ 166 (435)
.|+. +.|+|.++...| +|++|-+.+ .+.+++..+. ++...++.. ..++.|+.|.|.
T Consensus 15 ~G~i--v~G~V~~I~~fG---aFV~L~e~~-g~eGLvhiSe--ls~~~v~~~~~~~~vGd~V~Vk 71 (182)
T 1kl9_A 15 VEDV--VMVNVRSIAEMG---AYVSLLEYN-NIEGMILLSE--LSRRRIRSINKLIRIGRNECVV 71 (182)
T ss_dssp TTCE--EEEEEEEECSSE---EEEEETTTT-TEEEEEEGGG--C------------CTTCEEEEE
T ss_pred CCCE--EEEEEEEEeccE---EEEEEccCC-CcEEEEEHHH--CCCcccCCHHHhcCCCCEEEEE
Confidence 4554 689999999998 899995322 2788887653 222222222 347778877665
No 130
>2eqs_A ATP-dependent RNA helicase DHX8; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.34 E-value=37 Score=27.05 Aligned_cols=60 Identities=17% Similarity=0.132 Sum_probs=36.9
Q ss_pred CCCCEEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHH-HHHhcCCCCcEEEEEE
Q 013865 102 LKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMV-RFVRSLSNESIVDVIG 167 (435)
Q Consensus 102 ~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~-k~~~~l~~esiV~V~G 167 (435)
..|+. +.|+|.++...| +|++|.+-...+.+++..+.-. +...+ .....++.|+.|.|.=
T Consensus 11 ~vG~i--~~G~V~~v~~fG---~FV~l~~~~~~~~Glvhisel~-~~~~~~~~~~~~~~Gd~V~VkV 71 (103)
T 2eqs_A 11 TIGDI--YNGKVTSIMQFG---CFVQLEGLRKRWEGLVHISELR-REGRVANVADVVSKGQRVKVKV 71 (103)
T ss_dssp CTTCE--EEEEEEEECSSC---EEEEECSSSSCCEEEECGGGTS-SSSCCCCHHHHCCTTCEEEEEE
T ss_pred CCCCE--EEEEEEEEeccE---EEEEEcCCCCCeEEEEEHHHCC-CCcccCCcccEeCCCCEEEEEE
Confidence 44654 679999999998 8999965212467777654320 10000 1123588999887763
No 131
>1ou9_A Stringent starvation protein B homolog; SSRA peptide-binding protein, homodimer, transport protein; 1.80A {Haemophilus influenzae} SCOP: b.136.1.1 PDB: 1oul_A 1zsz_C
Probab=32.93 E-value=40 Score=28.58 Aligned_cols=54 Identities=20% Similarity=0.330 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHhhcCCeEEeeCceeeccCCCCCcceeEecc-CCCceeeccChHHHHhh
Q 013865 250 IQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDY-KGQSACLAQSPQLHKQM 308 (435)
Q Consensus 250 ~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~-~~~~~~L~~Spql~lq~ 308 (435)
.|--+++++.+|+.++|| ||.|.-.+.-.|..+= ..| .+...-|-+||+-....
T Consensus 8 ~rPYLiRA~yeWi~DN~~----TP~L~Vda~~~~v~VP-~~~v~dGqIVLNIsp~Av~~L 62 (129)
T 1ou9_A 8 KRPYLLRAYYDWLVDNSF----TPYLVVDATYLGVNVP-VEYVKDGQIVLNLSASATGNL 62 (129)
T ss_dssp SHHHHHHHHHHHHHHTTC----CEEEEEETTSTTCBSC-GGGCBTTEEEEECCTTTCEEE
T ss_pred CchHHHHHHHHHHHhCCC----cceEEEEcCCCCCcCC-HHHhcCCEEEEECChhhhcCe
Confidence 356789999999999999 9999866553444421 123 35678888888766663
No 132
>1v1q_A Primosomal replication protein N; primosome, DNA replication, DNA binding; 2.1A {Escherichia coli} SCOP: b.40.4.3 PDB: 2ccz_A
Probab=30.96 E-value=91 Score=26.41 Aligned_cols=55 Identities=11% Similarity=0.240 Sum_probs=36.0
Q ss_pred EEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCcccCCCceeEEEEEeEEEEeecC
Q 013865 134 TVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRA 196 (435)
Q Consensus 134 ~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~~~~~~t~~lEi~v~~i~vls~~ 196 (435)
.|+||+-.+.. + ...+.|.+|+-|.|+|.+.... ...|. ..+.+++.+|..|+..
T Consensus 66 ~i~vv~wGk~A----E--~~~~yl~KGs~V~VeGrL~tr~-~k~G~-kr~~~~a~~i~~l~~k 120 (134)
T 1v1q_A 66 QMPVIVSGHEN----Q--AITHSITVGSRITVQGFISCHK-AKNGL-SKMVLHAEQIELIDSV 120 (134)
T ss_dssp EEEEEEESTGG----G--GGGTTCCTTCEEEEEEEEEEEC-TTTTS-CEEEEEEEEEEETTSC
T ss_pred EEEEEEEhHHH----H--HHHHhcCCCCEEEEEEEEEEEE-CCCCC-EEEEEEEEEEEECcCC
Confidence 48888874311 1 1235699999999999997532 11221 2477789999998643
No 133
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis}
Probab=30.27 E-value=50 Score=27.51 Aligned_cols=54 Identities=26% Similarity=0.317 Sum_probs=36.0
Q ss_pred CCCEEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHH-HHHhcCCCCcEEEEE
Q 013865 103 KDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMV-RFVRSLSNESIVDVI 166 (435)
Q Consensus 103 ~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~-k~~~~l~~esiV~V~ 166 (435)
.|+ .+.|.|.++...| +|+.|-++ +++++..+.- +...+ .....+..|+.|.|.
T Consensus 7 vG~--iv~G~V~~i~~~G---~FV~l~~~---~~Glihisel--~~~~~~~~~~~~~vGd~V~vk 61 (130)
T 2k4k_A 7 VGS--VYTGKVTGLQAYG---AFVALDEE---TQGLVHISEV--THGFVKDINEHLSVGDEVQVK 61 (130)
T ss_dssp TTC--EEEEEEEEEETTE---EEEEEETT---EEEEEEGGGT--SSSCCSCGGGTCCTTCEEEEE
T ss_pred CCC--EEEEEEEEEeCCe---EEEEECCC---cEEEEEHHHC--CcccccCccccCCCCCEEEEE
Confidence 455 3689999999888 89999553 7888876432 11100 012458999998875
No 134
>2kct_A Cytochrome C-type biogenesis protein CCME; solution structure, heme chaperone, cytochrome C biogenesis, OB-fold domain, NESG, PSI-2; NMR {Desulfovibrio vulgaris str}
Probab=29.53 E-value=2.1e+02 Score=22.65 Aligned_cols=73 Identities=16% Similarity=0.131 Sum_probs=51.1
Q ss_pred CCCCCEEEEEEEEee---eec-CCCceEEEEEEeC---CeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEec-C
Q 013865 101 SLKDQEVLIRGRVHT---TRP-VGNKLAFVVVRER---VSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSV-P 172 (435)
Q Consensus 101 ~~~g~~V~v~GrV~~---~R~-~G~kl~Fl~Lrd~---~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~-~ 172 (435)
...|+.|+|.|-|.. .|. .|..+.| .|.|+ +.+|.|....-. + ..++-|.-|.++|.+.. .
T Consensus 5 ~~~~~~iRvgG~V~~GSv~r~~~~~~v~F-~vtD~~~~~~~v~V~Y~Gil---P-------DlFrEGqgVV~~G~l~~~~ 73 (94)
T 2kct_A 5 QDKLHTVRLFGTVAADGLTMLDGAPGVRF-RLEDKDNTSKTVWVLYKGAV---P-------DTFKPGVEVIIEGGLAPGE 73 (94)
T ss_dssp SCTTCCEEEEEEECSTTCEECTTSSEEEE-EEECSSCTTCEEEEEEESCC---C-------TTCCTTCEEEEEEEECTTC
T ss_pred CCCCCeEEEeeEEeCCeEEecCCCCEEEE-EEEcCCCCCcEEEEEECCCC---C-------ccccCCCeEEEEEEEeCCC
Confidence 356889999999974 454 3557777 56777 789999987431 1 25778999999999853 2
Q ss_pred CcccCCCceeEEEEEeEEEEeecC
Q 013865 173 DVEIKGATQQVEVQIKKLYCVSRA 196 (435)
Q Consensus 173 ~~~~~~~t~~lEi~v~~i~vls~~ 196 (435)
+ .+.+++ ||.+|
T Consensus 74 g----------~F~A~e--vLaKh 85 (94)
T 2kct_A 74 D----------TFKART--LMTKC 85 (94)
T ss_dssp S----------EEEEEE--EEESS
T ss_pred C----------EEEEeE--EEEeC
Confidence 1 244554 77777
No 135
>2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=27.92 E-value=32 Score=28.01 Aligned_cols=57 Identities=21% Similarity=0.341 Sum_probs=35.8
Q ss_pred CCCCEEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEE
Q 013865 102 LKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVI 166 (435)
Q Consensus 102 ~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~ 166 (435)
..|+. +.|.|.++...| +|++|..+ +.+++..+.-..+....+.-..+..||.|.|.
T Consensus 29 ~~G~~--~~G~V~~v~~~G---~FV~l~~~---~~Glvhisel~~~~~~~~~~~~~~vGd~V~vk 85 (115)
T 2khi_A 29 PEGTK--LTGRVTNLTDYG---CFVEIEEG---VEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVM 85 (115)
T ss_dssp CSSCE--EEEEEEEEETTE---EEEECSTT---CEEEEETTSSSCSSTTCSSTTTCCTTCEEEEE
T ss_pred CCCCE--EEEEEEEEECCE---EEEEECCC---CEEEEEHHHCCccccccCcccEECCCCEEEEE
Confidence 45764 789999999988 89999432 67888754321000000011247889888775
No 136
>2b29_A Replication protein A 70 kDa DNA-binding subunit; 1.60A {Homo sapiens} SCOP: b.40.4.3 PDB: 2b3g_A 1ewi_A
Probab=27.15 E-value=2.1e+02 Score=23.66 Aligned_cols=62 Identities=13% Similarity=0.199 Sum_probs=42.0
Q ss_pred EEEEEeCCeEEEE-EEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCcccCCCceeEEEEEeEEEEeecC
Q 013865 125 FVVVRERVSTVQC-LATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRA 196 (435)
Q Consensus 125 Fl~Lrd~~~~iQv-v~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~~~~~~t~~lEi~v~~i~vls~~ 196 (435)
=+.|.||...+|+ |+...-. ++++ -..|..+++|.+.=.....- + .+.--|.+.++.||.++
T Consensus 46 Rl~lSDG~~~~~~~mLatqln----~~v~-~g~l~~~sIirl~~y~~~~v---~--~~k~vliIl~levl~~~ 108 (123)
T 2b29_A 46 RLLMSDGLNTLSSFMLATQLN----PLVE-EEQLSSNCVCQIHRFIVNTL---K--DGRRVVILMELEVLKSA 108 (123)
T ss_dssp EEEEECSSEEEEEEEECGGGH----HHHH-TTSSCTTCEEEEEEEEEEEC---S--SSCEEEEEEEEEEEECS
T ss_pred EEEEECcchheeeehhHHHHH----HHHh-cCCccCCCEEEEEEEEEEEe---c--CCcEEEEEEeeEEeecc
Confidence 3789999999998 8875321 2221 24699999999976543211 1 02356888899999874
No 137
>2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A
Probab=26.18 E-value=59 Score=28.73 Aligned_cols=56 Identities=14% Similarity=0.191 Sum_probs=32.9
Q ss_pred CCCEEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHH-hcCCCCcEEEEE
Q 013865 103 KDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFV-RSLSNESIVDVI 166 (435)
Q Consensus 103 ~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~-~~l~~esiV~V~ 166 (435)
.|+. +.|+|.++...| +|++|-+.. .+.+++..+. ++...+.-. ..++.|+.|.|.
T Consensus 15 ~G~i--v~G~V~~i~~fG---aFV~L~e~~-gveGLvhiSe--ls~~~v~~~~~~~~vGd~V~vk 71 (175)
T 2a19_A 15 IDDI--VMVNVQQIAEMG---AYVKLLEYD-NIEGMILLSE--LSRRRIRSIQKLIRVGKNDVAV 71 (175)
T ss_dssp TTCE--EEEEEEEEETTE---EEEEETTTT-TCEEEEECC----------CCCCCCCTTSEEEEE
T ss_pred CCCE--EEEEEEEEecce---EEEEEcCCC-CcEEEEEHHH--cCCcccCCHHHcCCCCCEEEEE
Confidence 4554 689999999998 899994212 2678887542 222111111 236778777665
No 138
>3f1z_A Putative nucleic acid-binding lipoprotein; YP_001337197.1, S genomics, joint center for structural genomics, JCSG; 2.46A {Klebsiella pneumoniae subsp}
Probab=25.35 E-value=1.1e+02 Score=24.47 Aligned_cols=66 Identities=23% Similarity=0.297 Sum_probs=41.9
Q ss_pred CCCCCCEEEEEEEEeeeecC----CCceEEE-EEEeCCeE--EEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEec
Q 013865 100 GSLKDQEVLIRGRVHTTRPV----GNKLAFV-VVRERVST--VQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSV 171 (435)
Q Consensus 100 ~~~~g~~V~v~GrV~~~R~~----G~kl~Fl-~Lrd~~~~--iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~ 171 (435)
....|+-|.|||-|..+|.. | .-.|| ..||...+ -.+.++-... .|. -...|..||+..|.|.|..
T Consensus 45 sdylgkwvkvrgvivdirrksgiag-syyfivtmrdeqnktdkrltfnfgsh-nsa----dvealsngsvativgqvhq 117 (133)
T 3f1z_A 45 SDYLGKWVKVRGVIVDIRRKSGIAG-SYYFIVTMRDEQNKTDKRLTFNFGSH-NSA----DVEALSNGSVATIVGQVHQ 117 (133)
T ss_dssp HHHTTCEEEEEEEEEEEEEEECSTT-CEEEEEEEECTTCSCSCCEEEEEEGG-GHH----HHTTCCTTSEEEEEEECCC
T ss_pred hhhhcceEEEEEEEEEeeeccCccc-eEEEEEEeeccccCccceEEEeccCC-cch----hhHhhcCCceeeEeeeeee
Confidence 34679999999999999875 3 33454 45665431 1222322211 222 2467999999999998754
No 139
>1eqq_A Single stranded DNA binding protein; beta barrel, protein-DNA complex, replication/RNA complex; HET: 5MU; 3.20A {Escherichia coli} SCOP: b.40.4.3
Probab=24.58 E-value=37 Score=30.16 Aligned_cols=55 Identities=15% Similarity=0.038 Sum_probs=34.0
Q ss_pred EEEEEEeeCCCCCcHHHHH-HHhcCCCCcEEEEEEEEecCCcc-cCCCc-eeEEE---EEeEEEEeec
Q 013865 134 TVQCLATVKPDSVSKEMVR-FVRSLSNESIVDVIGVVSVPDVE-IKGAT-QQVEV---QIKKLYCVSR 195 (435)
Q Consensus 134 ~iQvv~~~~~~~~s~~~~k-~~~~l~~esiV~V~G~v~~~~~~-~~~~t-~~lEi---~v~~i~vls~ 195 (435)
-+.|++-.. ..+ ..+.|++|+.|.|+|.+....-. ..+.+ ..+|| .+.+|.+|..
T Consensus 55 ~i~vv~wg~-------~Ae~~~~~l~KG~~V~VeGrL~~r~~~dkdG~~r~~~eI~v~va~~i~~l~~ 115 (178)
T 1eqq_A 55 WHRVVLFGK-------LAEVASEYLRKGSQVYIEGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGG 115 (178)
T ss_dssp EEEEEECHH-------HHHHHHHHCCTTCEEEECCEEEEEEEECSSSEEEEEEEEECSSSCCEECSCC
T ss_pred EEEEEEccH-------HHHHHHHhcCCCCEEEEEEEEEeeeEECCCCCEEEEEEEeeeecCeEEEccc
Confidence 567777532 223 33569999999999998743211 22332 23777 6677777754
No 140
>1xjv_A Protection of telomeres 1; protein-DNA complex, single-stranded DNA, transcription/DNA complex; 1.73A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 3kjo_A 3kjp_A
Probab=23.34 E-value=2e+02 Score=27.21 Aligned_cols=69 Identities=19% Similarity=0.232 Sum_probs=45.3
Q ss_pred eEEeccccCCCCCCEEEEEEEEeeeec----CC-CceEEEEEEeCC-eEEEEEEeeCCCCCcHHHHHHHhcC-CCCcEEE
Q 013865 92 WTVVGALNGSLKDQEVLIRGRVHTTRP----VG-NKLAFVVVRERV-STVQCLATVKPDSVSKEMVRFVRSL-SNESIVD 164 (435)
Q Consensus 92 ~~~i~~l~~~~~g~~V~v~GrV~~~R~----~G-~kl~Fl~Lrd~~-~~iQvv~~~~~~~~s~~~~k~~~~l-~~esiV~ 164 (435)
|+.|+++ ..|..|.|.|.|...+. .| .-++-+.|.|.+ ..|.|.+..... ..+..+ ..||||.
T Consensus 6 y~~l~~l---~~~~~vnvigVV~~~~~p~~s~G~d~~~tl~I~D~S~~gl~v~iF~~~~-------~~LP~v~~~GDII~ 75 (294)
T 1xjv_A 6 YTPLNQL---KGGTIVNVYGVVKFFKPPYLSKGTDYCSVVTIVDQTNVKLTCLLFSGNY-------EALPIIYKNGDIVR 75 (294)
T ss_dssp CCCGGGC---CSSEEEEEEEEEEEEEEEEECSSSSEEEEEEEECTTCCEEEEEEEESSG-------GGSCCCCSTTCEEE
T ss_pred EEEHHHh---hCCCeeEEEEEEEEcCCCccCCCCeEEEEEEEEcCCCCCEEEEEECCCh-------HHCCCCCCCCCEEE
Confidence 4455544 24888999999976543 44 356667788865 358888776421 123445 8999999
Q ss_pred EEEEEe
Q 013865 165 VIGVVS 170 (435)
Q Consensus 165 V~G~v~ 170 (435)
+..+-.
T Consensus 76 l~~vki 81 (294)
T 1xjv_A 76 FHRLKI 81 (294)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 998654
No 141
>3hy0_A Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, protein biosynthesis, NUC binding, amino acid-binding, ATP-binding, metal-binding; HET: G5A EPE; 1.90A {Escherichia coli} PDB: 3hxz_A* 3hy1_A* 3hxv_A* 3hxu_A* 3hxw_A* 3hxx_A* 3hxy_A*
Probab=22.79 E-value=2.4e+02 Score=28.66 Aligned_cols=96 Identities=19% Similarity=0.323 Sum_probs=59.6
Q ss_pred HHHHHHHHHHhhcCCeEEeeCceeecc-C-----CCCCcceeEeccCCCceeeccChHHHHhhhccCCCceeEEEeccee
Q 013865 252 SQVGNIFRQFLLSENFVEIHTPKLIAG-S-----SEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFR 325 (435)
Q Consensus 252 s~i~~~~r~fl~~~gF~EV~TP~l~~~-~-----~egga~~F~v~~~~~~~~L~~Spql~lq~~i~~g~~rVfeIgp~FR 325 (435)
+.|-+.|-+||.++|-.-|.+--|++. + +..|..+|+ ++||-+.+ -...|+-..-+|.|
T Consensus 5 ~eiR~~Fl~FF~~kgH~~v~Ssslvp~~DptLLftnAGM~~FK------p~flG~~~---------p~~~r~~~sQkCiR 69 (441)
T 3hy0_A 5 AEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFK------DVFLGLDK---------RNYSRATTSQRCVR 69 (441)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCCSSCSSCTTCSSCCSGGGGGH------HHHHTSSC---------CSCSEEEEEEEEEC
T ss_pred HHHHHHHHHHHHhCCCeEcCCCCccCCCCCCceeecccchhhh------hhhcCCCC---------CCCCCcccccccee
Confidence 456677888999999888876656542 1 112233332 22222211 14678999999999
Q ss_pred c-------CC-CCCCccccccccceeeeeccccH-HHHHHHHHHHHH
Q 013865 326 A-------ED-SYTHRHLCEFTGLDVEMEIKKHY-SEVMDIVDRLFV 363 (435)
Q Consensus 326 ~-------E~-s~t~rHl~EFt~lE~e~a~~~~~-~d~m~~~e~li~ 363 (435)
+ |+ ..|.||.+=|.||-- .+|.+.+ ++.+.++=+|+.
T Consensus 70 ~gGKHnDlenVG~t~rHhTfFEMLGN-fSFGDYFK~eAI~~Awe~LT 115 (441)
T 3hy0_A 70 AGGKHNDLENVGYTARHHTFFEMLGN-FSFGDYFKLDAILFAWLLLT 115 (441)
T ss_dssp EETTEECGGGBTTBSSCCSEEEEEEE-EESSSCCHHHHHHHHHHHHH
T ss_pred cCCCCCCHHhhCCCCccccceeeccc-cccchhhHHHHHHHHHHHhC
Confidence 7 22 358999999999865 5665522 466666655554
No 142
>1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=22.69 E-value=1.4e+02 Score=24.13 Aligned_cols=52 Identities=12% Similarity=0.179 Sum_probs=34.2
Q ss_pred CCCCEEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHH------hcCCCCcEEEEE
Q 013865 102 LKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFV------RSLSNESIVDVI 166 (435)
Q Consensus 102 ~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~------~~l~~esiV~V~ 166 (435)
..|+. +.|.|.++...| +|++|..+ .+.+++..+ .+..|. ..++.||.|.|.
T Consensus 20 ~~G~i--~~G~V~~v~~fG---~fV~l~~~--~~~~l~~~~------~~~~~~~~~~~~~~~~~Gd~V~vk 77 (119)
T 1wi5_A 20 KPGML--LTGTVSSLEDHG---YLVDIGVD--GTRAFLPLL------KAQEYIRQKNKGAKLKVGQYLNCI 77 (119)
T ss_dssp CTTCE--EEEEEEEECSSE---EEEECCCS--SCEEEEEHH------HHHHHHHHHSSSCCCCTTCEEEEE
T ss_pred CCCCE--EEEEEEEEeCce---EEEEECCC--CeEEEEEEe------cccccccccCccCEeCCCCEEEEE
Confidence 45664 679999999998 89999622 234555432 122232 358999999875
Done!