RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 013865
(435 letters)
>d1eova2 d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (AspRS)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 353
Score = 168 bits (427), Expect = 4e-49
Identities = 130/238 (54%), Positives = 165/238 (69%), Gaps = 7/238 (2%)
Query: 200 PITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFR 259
PI +EDASRSEAE E A LP VN DTRL+ RVID+RT+ NQ IFRIQ+ V +FR
Sbjct: 1 PILLEDASRSEAEAEAA-----GLPVVNLDTRLDYRVIDLRTVTNQAIFRIQAGVCELFR 55
Query: 260 QFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFE 319
++L ++ F E+HTPKL+ SEGGS+VF + Y A LAQSPQ +KQ I DF RV+E
Sbjct: 56 EYLATKKFTEVHTPKLLGAPSEGGSSVFEVTYFKGKAYLAQSPQFNKQQLIVADFERVYE 115
Query: 320 TGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEA 379
GPVFRAE+S THRH+ EFTGLD+EM ++HY EV+D + LFV IF L E+E
Sbjct: 116 IGPVFRAENSNTHRHMTEFTGLDMEMAFEEHYHEVLDTLSELFVFIFSELPKRFAHEIEL 175
Query: 380 VAKQYPFEPLKYKP--KTLRLTFEEGVQMLKDAGVEIDPLGDLNTESERKLGQLVLEK 435
V KQYP E K K +RLT++EG++ML+ AG EI DL+TE+E+ LG+LV +K
Sbjct: 176 VRKQYPVEEFKLPKDGKMVRLTYKEGIEMLRAAGKEIGDFEDLSTENEKFLGKLVRDK 233
>d1n9wa2 d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (AspRS)
{Thermus thermophilus, AspRS-2 [TaxId: 274]}
Length = 304
Score = 125 bits (314), Expect = 2e-33
Identities = 64/201 (31%), Positives = 105/201 (52%), Gaps = 6/201 (2%)
Query: 235 RVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQ 294
R + +R + ++Q+ + FR++L ++F EI TPK++ +EGGS +F +DY +
Sbjct: 2 RYVTLRGEKARAPLKVQAALVRGFRRYLDRQDFTEIFTPKVVRAGAEGGSGLFGVDYFEK 61
Query: 295 SACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEV 354
A LAQSPQ + + G F RV+E PV+R E+ +T RHL E+ LDVEM ++
Sbjct: 62 RAYLAQSPQ-LYKQIMVGVFERVYEVAPVWRMEEHHTSRHLNEYLSLDVEMGFIADEEDL 120
Query: 355 MDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKDAGVEI 414
M + + L + + N E+ + +P P LT E ++LK+ +
Sbjct: 121 MRLEEALLAEMLEEALNTAGDEIRLLGATWPSFPQDIPR----LTHAEAKRILKE-ELGY 175
Query: 415 DPLGDLNTESERKLGQLVLEK 435
DL+ E+ER LG+ E+
Sbjct: 176 PVGQDLSEEAERLLGEYAKER 196
>d1l0wa3 d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synthetase
(AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]}
Length = 356
Score = 124 bits (313), Expect = 8e-33
Identities = 62/234 (26%), Positives = 91/234 (38%), Gaps = 30/234 (12%)
Query: 200 PITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFR 259
P ++ R E E E +++ RL R +D+R Q R++ +V
Sbjct: 3 PFPVDAGWRGEEEKE-----------ASEELRLKYRYLDLRRRRMQENLRLRHRVIKAIW 51
Query: 260 QFLLSENFVEIHTPKLIAGSSEGGSAVF--RLDYKGQSACLAQSPQLHKQMSICGDFGRV 317
FL E FV++ TP L + EG G L QSPQL KQM + R
Sbjct: 52 DFLDREGFVQVETPFLTKSTPEGARDFLVPYRHEPGLFYALPQSPQLFKQMLMVAGLDRY 111
Query: 318 FETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKEL 377
F+ FR ED R +FT LD+EM +V+++ +RL +F V
Sbjct: 112 FQIARCFRDEDLRADRQ-PDFTQLDLEMSF-VEVEDVLELNERLMAHVFREALGVELP-- 167
Query: 378 EAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKDAGVEID-----PLGDLNTESER 426
PF L Y+ R ++ L+ G PL + + E E
Sbjct: 168 ------LPFPRLSYEEAMERYGSDK--PDLRREGFRFLWVVDFPLLEWDEEEEA 213
>d1c0aa3 d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synthetase
(AspRS) {Escherichia coli [TaxId: 562]}
Length = 346
Score = 124 bits (311), Expect = 1e-32
Identities = 44/186 (23%), Positives = 79/186 (42%), Gaps = 4/186 (2%)
Query: 226 VNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSA 285
++ RL R +D+R + ++++ ++ R+F+ F++I TP L + EG
Sbjct: 10 NTEEARLKYRYLDLRRPEMAQRLKTRAKITSLVRRFMDDHGFLDIETPMLTKATPEGARD 69
Query: 286 --VFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDV 343
V +KG+ L QSPQL KQ+ + F R ++ FR ED R EFT +DV
Sbjct: 70 YLVPSRVHKGKFYALPQSPQLFKQLLMMSGFDRYYQIVKCFRDEDLRADRQ-PEFTQIDV 128
Query: 344 EMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEG 403
E +V ++++ L ++ + V + + LR +
Sbjct: 129 ETSF-MTAPQVREVMEALVRHLWLEVKGVDLGDFPVMTFAEAERRYGSDKPDLRDESKWA 187
Query: 404 VQMLKD 409
+ D
Sbjct: 188 PLWVID 193
>d1b8aa2 d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (AspRS)
{Archaeon Pyrococcus kodakaraensis [TaxId: 311400]}
Length = 335
Score = 118 bits (297), Expect = 1e-30
Identities = 74/201 (36%), Positives = 113/201 (56%), Gaps = 4/201 (1%)
Query: 223 LPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEG 282
+ DTRLNNR +D+R IF+I+S V R F F+EIHTPK+IA ++EG
Sbjct: 9 KVKAELDTRLNNRFMDLRRPEVMAIFKIRSSVFKAVRDFFHENGFIEIHTPKIIATATEG 68
Query: 283 GSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLD 342
G+ +F + Y + A LA+SPQL+K++ + RV+E P+FRAE+ T RHL E +D
Sbjct: 69 GTELFPMKYFEEDAFLAESPQLYKEIMMASGLDRVYEIAPIFRAEEHNTTRHLNEAWSID 128
Query: 343 VEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEE 402
EM + EVM ++RL + + KEL+ FE + K R+++++
Sbjct: 129 SEMAFIEDEEEVMSFLERLVAHAINYVREHNAKELD----ILNFELEEPKLPFPRVSYDK 184
Query: 403 GVQMLKDAGVEIDPLGDLNTE 423
+++L D G EI D++TE
Sbjct: 185 ALEILGDLGKEIPWGEDIDTE 205
>d1nnha_ d.104.1.1 (A:) Hypothetical protein PF1951 {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 293
Score = 112 bits (281), Expect = 7e-29
Identities = 33/148 (22%), Positives = 56/148 (37%), Gaps = 10/148 (6%)
Query: 237 IDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTP-------KLIAGSSEGGSAVFRL 289
++I + IQ+++ F + E F + L + G +
Sbjct: 3 VEIISREISPTLDIQTKILEYMTDFFVKEGFKWLLPVIISPITDPLWPDPAGEGMEPAEV 62
Query: 290 DYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAED--SYTHRHLCEFTGLDVEMEI 347
+ G L S LHKQ++I ++F P R E RH EFT LD E+E
Sbjct: 63 EIYGVKMRLTHSMILHKQLAIAMGLKKIFVLSPNIRLESRQKDDGRHAYEFTQLDFEVER 122
Query: 348 KKHYSEVMDIVDRLFVTIFDGLNNVCKK 375
++M +++RL +F +
Sbjct: 123 -AKMEDIMRLIERLVYGLFRKAEEWTGR 149
>d1e1oa2 d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS)
{Escherichia coli, gene lysU [TaxId: 562]}
Length = 342
Score = 106 bits (264), Expect = 4e-26
Identities = 48/214 (22%), Positives = 90/214 (42%), Gaps = 9/214 (4%)
Query: 228 QDTRLNNRVID-IRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAV 286
Q+ R R +D I ++ F ++S++ RQF+++ F+E+ TP + +
Sbjct: 2 QEVRYRQRYLDLIANDKSRQTFVVRSKILAAIRQFMVARGFMEVETPMMQVIPGGASARP 61
Query: 287 FR--LDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVE 344
F + L +P+L+ + + G F RVFE FR E + RH EFT +++
Sbjct: 62 FITHHNALDLDMYLRIAPELYLKRLVVGGFERVFEINRNFRNEGI-SVRHNPEFTMMELY 120
Query: 345 MEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKEL--EAVAKQYPFEPLKYKPKTLRLTFEE 402
M ++ +++++ + LF T+ + K PFE L + + E
Sbjct: 121 MAYADYH-DLIELTESLFRTLAQEVLGTTKVTYGEHVFDFGKPFEKLTMREAIKKYRPET 179
Query: 403 GVQMLKDAGVEIDPLGDLN--TESERKLGQLVLE 434
+ L + + E LG++V E
Sbjct: 180 DMADLDNFDAAKALAESIGITVEKSWGLGRIVTE 213
>d1eova1 b.40.4.1 (A:71-204) Aspartyl-tRNA synthetase (AspRS)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 134
Score = 84.7 bits (209), Expect = 2e-20
Identities = 51/140 (36%), Positives = 75/140 (53%), Gaps = 13/140 (9%)
Query: 62 NNYGDVPLQELQSVNDPQTGKWSEAVNGREWT-VVGALNGSLKDQEVLIRGRVHTTRPVG 120
+NYG +PL +QS + +TG ++ V D+EVL R RVH TR G
Sbjct: 3 DNYGKLPL--IQSRDSDRTG--------QKRVKFVDLDEAKDSDKEVLFRARVHNTRQQG 52
Query: 121 NKLAFVVVRERVSTVQCLATVK-PDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGA 179
LAF+ +R++ S +Q L ++SK MV++ SL+ ESIV V G+V D IK A
Sbjct: 53 ATLAFLTLRQQASLIQGLVKANKEGTISKNMVKWAGSLNLESIVLVRGIVKKVDEPIKSA 112
Query: 180 -TQQVEVQIKKLYCVSRAAK 198
Q +E+ I K+Y +S +
Sbjct: 113 TVQNLEIHITKIYTISETPE 132
>d1b8aa1 b.40.4.1 (A:1-103) Aspartyl-tRNA synthetase (AspRS)
{Archaeon Pyrococcus kodakaraensis [TaxId: 311400]}
Length = 103
Score = 52.7 bits (126), Expect = 1e-09
Identities = 26/101 (25%), Positives = 45/101 (44%), Gaps = 7/101 (6%)
Query: 96 GALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVR 155
+ L Q+V + G V + +G + F+ +R+R VQ T V E+ + +
Sbjct: 8 SEITEELNGQKVKVAGWVWEVKDLG-GIKFLWIRDRDGIVQI--TAPKKKVDPELFKLIP 64
Query: 156 SLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRA 196
L +E +V V GVV A E+ +K+ ++RA
Sbjct: 65 KLRSEDVVAVEGVV----NFTPKAKLGFEILPEKIVVLNRA 101
>d1n9wa1 b.40.4.1 (A:1-93) Aspartyl-tRNA synthetase (AspRS) {Thermus
thermophilus, AspRS-2 [TaxId: 274]}
Length = 93
Score = 49.8 bits (119), Expect = 2e-08
Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 18/98 (18%)
Query: 104 DQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIV 163
QEV + G +H R +G ++ F+++R+R VQ + ++ ES +
Sbjct: 13 GQEVELLGFLHWRRDLG-RIQFLLLRDRSGVVQV------------VTGGLKLPLPESAL 59
Query: 164 DVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRAAKTPI 201
V G+V VE A +EVQ K++ +S A P
Sbjct: 60 RVRGLV----VENAKAPGGLEVQAKEVEVLSP-ALEPT 92
>d1c0aa1 b.40.4.1 (A:1-106) Aspartyl-tRNA synthetase (AspRS)
{Escherichia coli [TaxId: 562]}
Length = 106
Score = 48.5 bits (115), Expect = 5e-08
Identities = 30/104 (28%), Positives = 46/104 (44%), Gaps = 8/104 (7%)
Query: 96 GALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVR 155
G L S Q+V + G V+ R +G L F+ +R+R VQ D + ++
Sbjct: 7 GQLRLSHVGQQVTLCGWVNRRRDLG-SLIFIDMRDREGIVQVF----FDPDRADALKLAS 61
Query: 156 SLSNESIVDVIGVVSVPDVEIKG---ATQQVEVQIKKLYCVSRA 196
L NE + V G V D + AT ++EV L ++RA
Sbjct: 62 ELRNEFCIQVTGTVRARDEKNINRDMATGEIEVLASSLTIINRA 105
>d1l0wa1 b.40.4.1 (A:1-104) Aspartyl-tRNA synthetase (AspRS)
{Thermus thermophilus, AspRS-1 [TaxId: 274]}
Length = 104
Score = 44.7 bits (105), Expect = 1e-06
Identities = 29/102 (28%), Positives = 49/102 (48%), Gaps = 7/102 (6%)
Query: 96 GALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVR 155
G+L + +EV++ G V+ R +G L F+ +R+R VQ P S + VR
Sbjct: 8 GSLRETHVGEEVVLEGWVNRRRDLG-GLIFLDLRDREGLVQL--VAHPASPAYATAERVR 64
Query: 156 SLSNESIVDVIGV-VSVPDVEIKGATQQVEVQIKKLYCVSRA 196
E +V G+ P+ + AT +VEV++ L ++ A
Sbjct: 65 ---PEWVVRAKGLVRLRPEPNPRLATGRVEVELSALEVLAEA 103
>d1qu6a1 d.50.1.1 (A:1-90) dsRNA-dependent protein kinase pkr
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 30.8 bits (69), Expect = 0.074
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 9 KVQEEVDSSSQSISKKAAKKEAAKKAKEERRKEAEAAAS 47
+ + SKK AK AAK A E KE +A +
Sbjct: 51 IIDGREFPEGEGRSKKEAKNAAAKLAVEILNKEKKAVSP 89
>d1x47a1 d.50.1.1 (A:8-92) Dgcr8 protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 85
Score = 27.3 bits (60), Expect = 1.1
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 9 KVQEEVDSSSQSISKKAAKKEAAKKA 34
+ S + SKK AK +AA+
Sbjct: 46 TIDGVTYGSGTASSKKLAKNKAARAT 71
>d1ab4a_ e.11.1.1 (A:) DNA Gyrase A {Escherichia coli [TaxId: 562]}
Length = 493
Score = 27.2 bits (60), Expect = 4.1
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 339 TGLDVEMEIKKHYSEVMDIVDRLFVTI--FDGLNNVCKKELEAVAKQY 384
TGL+ E ++ Y E++D + L + D L V ++ELE V +Q+
Sbjct: 438 TGLEHE-KLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQF 484
>d1o0wa2 d.50.1.1 (A:168-236) RNase III, C-terminal domain
{Thermotoga maritima [TaxId: 2336]}
Length = 69
Score = 24.8 bits (54), Expect = 5.5
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 9 KVQEEVDSSSQSISKKAAKKEAAKKA 34
+V + ++ + +KK A+KEAA+ A
Sbjct: 39 RVNGKTIATGKGRTKKEAEKEAARIA 64
>d1x49a1 d.50.1.1 (A:8-92) dsRNA-dependent protein kinase pkr
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 85
Score = 25.0 bits (54), Expect = 5.9
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 22 SKKAAKKEAAKKAKEERRKEAEAAASAA 49
SK+ A+ AAK A + E + +
Sbjct: 58 SKQEARNAAAKLAVDILDNENKVDCHTS 85
>d2nuga2 d.50.1.1 (A:151-218) RNase III, C-terminal domain
{Aquifex aeolicus [TaxId: 63363]}
Length = 68
Score = 24.6 bits (53), Expect = 6.2
Identities = 6/13 (46%), Positives = 10/13 (76%)
Query: 22 SKKAAKKEAAKKA 34
SKK A++ AA++
Sbjct: 51 SKKEAEQRAAEEL 63
>d1qu6a2 d.50.1.1 (A:91-179) dsRNA-dependent protein kinase pkr
{Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 25.2 bits (54), Expect = 6.5
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 9 KVQEEVDSSSQSISKKAAKKEAAKKAKEERRKE 41
K+ ++ S +K+ AK+ AAK A + E
Sbjct: 51 KMGQKEYSIGTGSTKQEAKQLAAKLAYLQILSE 83
>d1jmca2 b.40.4.3 (A:299-420) Replication protein A 70 KDa subunit
(RPA70) {Human (Homo sapiens) [TaxId: 9606]}
Length = 122
Score = 25.2 bits (55), Expect = 9.5
Identities = 6/16 (37%), Positives = 12/16 (75%)
Query: 154 VRSLSNESIVDVIGVV 169
+ + S +S+VD+IG+
Sbjct: 10 LENKSKDSLVDIIGIC 25
>d3c8ya1 c.96.1.1 (A:210-574) Fe-only hydrogenase, catalytic domain
{Clostridium pasteurianum [TaxId: 1501]}
Length = 365
Score = 26.1 bits (57), Expect = 9.5
Identities = 15/73 (20%), Positives = 26/73 (35%), Gaps = 4/73 (5%)
Query: 347 IKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQM 406
K +Y + + + T+ KK A + E + +T E +M
Sbjct: 123 SKTYYPSISGLDPKNVFTVTVM-PCTSKK---FEADRPQMEKDGLRDIDAVITTRELAKM 178
Query: 407 LKDAGVEIDPLGD 419
+KDA + L D
Sbjct: 179 IKDAKIPFAKLED 191
>d1uila_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 113
Score = 25.0 bits (54), Expect = 9.9
Identities = 8/48 (16%), Positives = 17/48 (35%), Gaps = 2/48 (4%)
Query: 6 EPPKVQEEVDSSSQSISKKAAKKEAAKKA--KEERRKEAEAAASAASA 51
++ + + +KK A + A + EA +S S+
Sbjct: 65 YIKQLGRRIFAREHGSNKKLAAQSCALSLVRQLYHLGVIEAYSSGPSS 112
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.130 0.358
Gapped
Lambda K H
0.267 0.0557 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,497,045
Number of extensions: 70098
Number of successful extensions: 208
Number of sequences better than 10.0: 1
Number of HSP's gapped: 197
Number of HSP's successfully gapped: 35
Length of query: 435
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 347
Effective length of database: 1,199,356
Effective search space: 416176532
Effective search space used: 416176532
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (25.0 bits)