Query 013866
Match_columns 435
No_of_seqs 124 out of 1215
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 08:10:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013866.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013866hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00206 amino acid transporte 100.0 1.2E-54 2.6E-59 427.4 32.4 395 20-431 59-465 (467)
2 KOG1304 Amino acid transporter 100.0 4.8E-52 1E-56 389.4 32.4 384 18-430 44-449 (449)
3 KOG1303 Amino acid transporter 100.0 2.8E-49 6.1E-54 377.9 29.5 393 18-433 35-437 (437)
4 PF01490 Aa_trans: Transmembra 100.0 1.1E-51 2.3E-56 405.4 -1.5 387 19-427 1-408 (409)
5 KOG1305 Amino acid transporter 100.0 9.2E-46 2E-50 352.1 26.9 404 18-434 3-409 (411)
6 PLN03074 auxin influx permease 100.0 1E-44 2.2E-49 355.1 32.2 382 18-434 43-455 (473)
7 KOG4303 Vesicular inhibitory a 100.0 1.8E-38 3.9E-43 280.6 8.7 386 18-433 114-517 (524)
8 COG0814 SdaC Amino acid permea 100.0 2.2E-33 4.7E-38 271.4 31.7 396 15-427 3-412 (415)
9 PF03222 Trp_Tyr_perm: Tryptop 100.0 7.9E-26 1.7E-30 217.4 34.7 371 19-420 1-392 (394)
10 PRK10483 tryptophan permease; 100.0 2E-25 4.3E-30 212.3 33.0 379 16-423 6-403 (414)
11 PRK09664 tryptophan permease T 100.0 1.4E-25 3E-30 213.1 31.2 380 15-423 3-404 (415)
12 PRK15132 tyrosine transporter 99.9 4.8E-25 1E-29 210.8 30.1 371 22-423 4-392 (403)
13 TIGR00837 araaP aromatic amino 99.9 3.5E-24 7.6E-29 207.9 28.1 348 26-398 2-359 (381)
14 PRK13629 threonine/serine tran 99.9 3.6E-23 7.8E-28 196.6 29.5 381 25-425 23-441 (443)
15 TIGR00814 stp serine transport 99.9 4.6E-21 1E-25 184.0 26.7 370 24-415 6-395 (397)
16 PRK10655 potE putrescine trans 99.8 2.6E-15 5.6E-20 148.6 35.6 240 17-275 4-245 (438)
17 PRK10249 phenylalanine transpo 99.7 1.7E-14 3.6E-19 143.2 35.3 370 1-396 1-393 (458)
18 PRK10644 arginine:agmatin anti 99.7 1.7E-14 3.7E-19 142.9 35.3 246 14-278 3-250 (445)
19 PRK10435 cadB lysine/cadaverin 99.7 2.6E-14 5.6E-19 141.0 34.5 242 16-278 2-246 (435)
20 TIGR03810 arg_ornith_anti argi 99.7 3.7E-14 8.1E-19 141.3 35.3 360 19-398 1-380 (468)
21 TIGR00905 2A0302 transporter, 99.7 2.9E-14 6.2E-19 142.3 34.4 300 17-333 5-313 (473)
22 TIGR00912 2A0309 spore germina 99.7 6.2E-15 1.3E-19 142.0 28.0 343 19-396 1-352 (359)
23 PRK15049 L-asparagine permease 99.7 4.9E-14 1.1E-18 141.0 34.7 356 18-397 27-405 (499)
24 KOG1287 Amino acid transporter 99.7 1.2E-15 2.5E-20 145.7 21.5 368 16-405 9-393 (479)
25 PRK11387 S-methylmethionine tr 99.7 4.1E-14 8.9E-19 141.1 33.7 294 17-333 12-320 (471)
26 PRK11021 putative transporter; 99.7 6.1E-14 1.3E-18 137.5 34.3 346 21-398 1-362 (410)
27 PRK10746 putative transport pr 99.7 1.1E-13 2.4E-18 137.3 34.8 361 16-398 7-388 (461)
28 PRK10836 lysine transporter; P 99.7 5.1E-13 1.1E-17 133.8 39.6 304 15-334 11-328 (489)
29 TIGR01773 GABAperm gamma-amino 99.7 9.6E-14 2.1E-18 137.9 32.6 296 14-333 7-316 (452)
30 PRK10238 aromatic amino acid t 99.7 1.4E-13 3E-18 136.6 33.6 358 14-397 7-385 (456)
31 COG1113 AnsP Gamma-aminobutyra 99.7 2.5E-14 5.5E-19 134.4 25.4 357 17-397 11-388 (462)
32 TIGR00909 2A0306 amino acid tr 99.7 6.5E-14 1.4E-18 138.3 30.0 302 18-333 2-309 (429)
33 PRK11357 frlA putative fructos 99.7 9.2E-14 2E-18 137.7 30.2 243 15-275 4-251 (445)
34 PRK11049 D-alanine/D-serine/gl 99.7 5.6E-13 1.2E-17 132.8 34.9 294 16-333 17-325 (469)
35 PRK10580 proY putative proline 99.6 2.7E-12 5.8E-17 127.6 37.2 241 16-273 6-253 (457)
36 TIGR00911 2A0308 L-type amino 99.6 4.1E-13 8.8E-18 135.1 30.5 249 16-278 39-294 (501)
37 TIGR00913 2A0310 amino acid pe 99.6 3.7E-12 8E-17 127.5 36.4 296 18-333 1-320 (478)
38 TIGR00906 2A0303 cationic amin 99.6 5.4E-13 1.2E-17 134.9 29.8 364 17-396 26-409 (557)
39 TIGR00908 2A0305 ethanolamine 99.6 1.4E-12 3.1E-17 129.2 32.2 234 15-272 3-244 (442)
40 PF13520 AA_permease_2: Amino 99.6 2.4E-12 5.1E-17 127.2 32.9 298 21-336 1-306 (426)
41 TIGR00930 2a30 K-Cl cotranspor 99.6 8.5E-13 1.9E-17 139.6 29.7 246 16-273 73-334 (953)
42 PRK10197 gamma-aminobutyrate t 99.5 4E-11 8.6E-16 118.7 33.8 338 30-397 3-367 (446)
43 COG0833 LysP Amino acid transp 99.5 2.5E-11 5.5E-16 116.8 30.1 358 17-396 42-426 (541)
44 PF03845 Spore_permease: Spore 99.5 5.1E-12 1.1E-16 119.6 24.5 289 20-334 1-293 (320)
45 COG0531 PotE Amino acid transp 99.4 4.5E-10 9.7E-15 112.3 33.4 302 15-332 8-316 (466)
46 TIGR03428 ureacarb_perm permea 99.4 4.1E-09 8.9E-14 105.4 35.2 260 14-280 8-274 (475)
47 KOG1286 Amino acid transporter 99.4 2.4E-11 5.3E-16 120.7 18.6 368 18-394 29-419 (554)
48 TIGR00907 2A0304 amino acid pe 99.4 1.5E-09 3.3E-14 108.8 30.4 256 14-279 7-277 (482)
49 PRK15238 inner membrane transp 99.3 4.5E-08 9.8E-13 98.4 38.3 245 17-274 5-266 (496)
50 TIGR03813 put_Glu_GABA_T putat 99.2 4.4E-08 9.5E-13 98.0 32.6 244 19-279 1-254 (474)
51 TIGR00910 2A0307_GadC glutamat 99.2 1.4E-07 3.1E-12 94.8 34.9 231 17-272 2-247 (507)
52 KOG3832 Predicted amino acid t 99.1 5.6E-09 1.2E-13 87.3 13.8 222 22-250 13-303 (319)
53 PF00324 AA_permease: Amino ac 99.0 2.6E-09 5.7E-14 107.0 13.5 285 30-332 6-318 (478)
54 COG3949 Uncharacterized membra 99.0 6.9E-07 1.5E-11 81.1 25.6 101 24-125 6-109 (349)
55 TIGR00800 ncs1 NCS1 nucleoside 98.7 2.8E-05 6.1E-10 77.0 28.9 262 13-282 6-274 (442)
56 COG1457 CodB Purine-cytosine p 98.7 6.1E-05 1.3E-09 72.6 29.9 302 49-394 49-358 (442)
57 PRK11375 allantoin permease; P 98.7 5.4E-05 1.2E-09 75.5 30.0 354 12-389 18-394 (484)
58 PRK09442 panF sodium/panthothe 98.5 0.00088 1.9E-08 67.3 34.1 238 17-275 39-292 (483)
59 COG0591 PutP Na+/proline sympo 98.5 0.0011 2.4E-08 66.5 34.1 111 17-127 36-151 (493)
60 PRK12488 acetate permease; Pro 98.5 0.002 4.3E-08 65.6 36.3 148 17-185 65-215 (549)
61 TIGR02119 panF sodium/pantothe 98.5 0.00087 1.9E-08 67.1 33.1 240 17-277 38-293 (471)
62 TIGR00796 livcs branched-chain 98.5 0.0013 2.9E-08 63.0 32.7 318 29-394 3-346 (378)
63 KOG1289 Amino acid transporter 98.5 0.00025 5.5E-09 69.2 27.2 63 218-280 250-313 (550)
64 PF00474 SSF: Sodium:solute sy 98.5 0.00028 6.2E-09 69.2 28.4 152 18-189 5-159 (406)
65 TIGR00813 sss transporter, SSS 98.4 0.0013 2.8E-08 64.6 30.4 146 18-183 2-149 (407)
66 PRK11017 codB cytosine permeas 98.4 0.0011 2.4E-08 64.8 28.7 206 48-280 38-244 (404)
67 TIGR02358 thia_cytX probable h 98.3 0.0014 3E-08 63.7 28.5 314 23-387 7-323 (386)
68 TIGR02711 symport_actP cation/ 98.3 0.0063 1.4E-07 62.0 35.6 146 17-183 65-213 (549)
69 COG1953 FUI1 Cytosine/uracil/t 98.2 0.0026 5.7E-08 61.8 27.2 269 12-293 32-320 (497)
70 TIGR00835 agcS amino acid carr 98.1 0.0047 1E-07 59.9 25.9 85 18-103 44-138 (425)
71 PRK09395 actP acetate permease 98.0 0.023 5.1E-07 58.0 36.1 146 17-183 67-215 (551)
72 TIGR02121 Na_Pro_sym sodium/pr 97.8 0.057 1.2E-06 54.3 33.2 147 17-183 34-189 (487)
73 PRK10484 putative transporter; 97.8 0.062 1.3E-06 54.6 34.5 90 17-107 36-126 (523)
74 TIGR03648 Na_symport_lg probab 97.8 0.068 1.5E-06 54.7 34.3 146 17-182 30-177 (552)
75 PF02133 Transp_cyt_pur: Perme 97.7 0.00025 5.4E-09 70.4 10.9 112 15-127 3-116 (440)
76 COG0733 Na+-dependent transpor 97.7 0.016 3.4E-07 55.8 21.8 247 16-269 4-264 (439)
77 PRK00701 manganese transport p 97.7 0.073 1.6E-06 52.5 31.4 43 81-123 93-135 (439)
78 PF02554 CstA: Carbon starvati 97.6 0.0049 1.1E-07 57.7 17.3 104 21-124 52-156 (376)
79 PRK15419 proline:sodium sympor 97.6 0.095 2.1E-06 52.9 33.6 148 17-185 38-195 (502)
80 COG1914 MntH Mn2+ and Fe2+ tra 97.5 0.1 2.2E-06 50.7 26.5 85 343-427 323-412 (416)
81 COG4147 DhlC Predicted symport 97.4 0.16 3.5E-06 49.2 28.5 217 38-277 61-294 (529)
82 COG1966 CstA Carbon starvation 97.2 0.033 7.2E-07 54.7 17.7 104 21-124 52-156 (575)
83 PF01566 Nramp: Natural resist 96.9 0.37 8E-06 46.4 22.5 64 61-125 22-85 (358)
84 PF01235 Na_Ala_symp: Sodium:a 96.9 0.44 9.6E-06 46.3 22.6 89 14-103 12-110 (416)
85 PRK15015 carbon starvation pro 96.9 0.026 5.6E-07 56.7 13.9 103 22-124 84-187 (701)
86 PF05525 Branch_AA_trans: Bran 96.6 0.81 1.7E-05 44.7 27.6 322 23-394 5-352 (427)
87 KOG2082 K+/Cl- cotransporter K 96.5 0.39 8.5E-06 49.0 19.2 160 21-182 115-281 (1075)
88 KOG1288 Amino acid transporter 96.4 0.31 6.6E-06 49.3 17.2 53 222-274 296-349 (945)
89 KOG2083 Na+/K+ symporter [Inor 95.8 0.018 3.8E-07 57.0 6.0 227 20-270 29-274 (643)
90 KOG2466 Uridine permease/thiam 95.2 2.7 5.8E-05 41.2 17.9 261 11-284 46-323 (572)
91 PRK15433 branched-chain amino 92.6 11 0.00025 37.0 29.1 327 22-394 9-355 (439)
92 TIGR00796 livcs branched-chain 92.4 3 6.5E-05 40.3 12.9 49 80-128 253-301 (378)
93 PF00209 SNF: Sodium:neurotran 92.1 15 0.00033 37.3 24.3 71 21-91 5-80 (523)
94 COG1115 AlsT Na+/alanine sympo 91.9 13 0.00028 36.3 23.7 107 16-123 58-175 (452)
95 TIGR01197 nramp NRAMP (natural 91.1 16 0.00034 35.6 28.6 36 80-115 62-97 (390)
96 PHA02764 hypothetical protein; 87.9 23 0.0005 33.0 19.2 88 18-107 11-102 (399)
97 PF05525 Branch_AA_trans: Bran 85.6 6.7 0.00015 38.5 9.7 83 46-128 224-307 (427)
98 KOG2349 Na+:iodide/myo-inosito 84.9 4.3 9.4E-05 41.1 8.3 92 17-109 43-135 (585)
99 COG1114 BrnQ Branched-chain am 77.3 74 0.0016 31.0 30.6 329 21-394 5-354 (431)
100 PRK15433 branched-chain amino 77.2 23 0.0005 34.9 10.1 43 85-127 268-310 (439)
101 COG1114 BrnQ Branched-chain am 75.0 68 0.0015 31.2 12.2 98 31-128 208-309 (431)
102 COG4145 PanF Na+/panthothenate 67.6 1.2E+02 0.0026 29.2 27.2 107 17-125 37-150 (473)
103 PRK10263 DNA translocase FtsK; 54.3 3.8E+02 0.0083 30.6 15.4 24 254-277 23-46 (1355)
104 KOG1289 Amino acid transporter 50.2 2.5E+02 0.0055 28.5 11.4 45 81-125 324-368 (550)
105 PF02028 BCCT: BCCT family tra 49.6 2.9E+02 0.0063 27.8 24.9 32 10-41 64-95 (485)
106 TIGR00909 2A0306 amino acid tr 46.8 2.9E+02 0.0063 27.0 12.2 46 82-127 264-309 (429)
107 PLN02680 carbon-monoxide oxyge 45.1 2.3E+02 0.0049 25.3 12.7 96 218-325 48-143 (232)
108 COG0814 SdaC Amino acid permea 42.1 3.5E+02 0.0075 26.6 11.9 83 313-396 281-374 (415)
109 KOG3660 Sodium-neurotransmitte 42.1 4.3E+02 0.0093 27.7 18.5 69 20-88 37-110 (629)
110 PF12794 MscS_TM: Mechanosensi 41.8 2.7E+02 0.0057 26.6 10.1 35 251-285 45-79 (340)
111 PRK09928 choline transport pro 41.0 4.6E+02 0.01 27.7 24.3 106 11-116 83-213 (679)
112 KOG1287 Amino acid transporter 39.8 1.4E+02 0.003 29.9 7.8 38 84-122 275-312 (479)
113 KOG4812 Golgi-associated prote 39.2 61 0.0013 28.7 4.7 72 352-427 160-245 (262)
114 PRK09928 choline transport pro 39.1 4.9E+02 0.011 27.5 15.2 83 251-333 136-227 (679)
115 PF05805 L6_membrane: L6 membr 32.4 1.3E+02 0.0029 25.9 5.7 63 370-432 45-117 (195)
116 PRK11281 hypothetical protein; 31.7 8.1E+02 0.018 27.8 13.9 30 251-280 541-570 (1113)
117 PF03169 OPT: OPT oligopeptide 30.8 3.4E+02 0.0073 28.4 9.7 70 22-94 356-427 (624)
118 TIGR03750 conj_TIGR03750 conju 28.1 2.9E+02 0.0063 21.5 8.5 67 18-84 15-81 (111)
119 PRK13183 psbN photosystem II r 27.4 66 0.0014 20.4 2.2 28 254-281 6-33 (46)
120 PF11085 YqhR: Conserved membr 26.0 2.6E+02 0.0057 23.5 6.2 59 33-106 47-110 (173)
121 PF02468 PsbN: Photosystem II 25.9 73 0.0016 19.9 2.2 26 256-281 5-30 (43)
122 PLN02351 cytochromes b561 fami 25.7 5E+02 0.011 23.4 11.9 74 243-325 73-146 (242)
123 PF07954 DUF1689: Protein of u 25.7 1.6E+02 0.0035 24.3 4.9 59 375-433 35-94 (152)
124 PF11990 DUF3487: Protein of u 25.0 3.5E+02 0.0076 21.4 7.9 66 18-84 18-84 (121)
125 PHA02680 ORF090 IMV phosphoryl 23.5 2.8E+02 0.0061 20.3 5.1 52 226-279 17-70 (91)
126 CHL00020 psbN photosystem II p 23.4 71 0.0015 19.9 1.8 27 255-281 4-30 (43)
127 PF08019 DUF1705: Domain of un 22.4 4.4E+02 0.0096 21.7 8.1 14 384-397 75-88 (156)
128 PF00902 TatC: Sec-independent 20.1 5.9E+02 0.013 22.2 11.0 34 300-333 59-92 (215)
No 1
>PTZ00206 amino acid transporter; Provisional
Probab=100.00 E-value=1.2e-54 Score=427.37 Aligned_cols=395 Identities=21% Similarity=0.345 Sum_probs=312.0
Q ss_pred CCchHHHHHHHHHHHHhhhhchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHhChhHHHH
Q 013866 20 RPSVSGAVFNVATSIIGAGIMSIPATIKVLGVIPAFVLIVIIACLTDISVDFLMRYTNAGETSTYAGVMRESFGRAGSVA 99 (435)
Q Consensus 20 ~~s~~~~~~~l~~~~iG~GiL~LP~~~~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~y~~l~~~~~G~~~~~~ 99 (435)
..|..++++|++|+++|+|+|+||++|+++||+.|++++++++.++.|+.+++.+++++.+.++|+|++++++||+++++
T Consensus 59 ~gg~~~s~fnL~~~~iGaGILsLP~Af~~~G~v~giillil~a~ls~ys~~lL~~~~~~~~~~sY~~la~~~~G~~g~~~ 138 (467)
T PTZ00206 59 PGGIAASAFNIASSTVGAGIVGLPSAANSSGLVMAMIYLIIITAMTIFSIYALGVAADKTNIRTYEGVARVLLGPWGSYY 138 (467)
T ss_pred CCcHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHhCHHHHHH
Confidence 34668999999999999999999999999999999999999999999999999999988889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccCCCCCCCccccchhhhhhcCccccchHHHHHHHHHHHHhccccccccchhhHHHHH
Q 013866 100 VQLCVMITNLGCLIIFLIIIGDVLCGKQPEGSVHLGVLQEWFGFHWWNTRVFALLFVMVFVMLPLALFRRVGSLRFSSAI 179 (435)
Q Consensus 100 ~~~~~~~~~~g~~~~y~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~l~~~s~~ 179 (435)
+++.+.+.++|.|++|+++.+|.++.++++... +++.+.. ...+..+ ...+.++++|++++|+++++++.|.+
T Consensus 139 v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~-----~~~~~~~-~~~r~~~-~~i~~~i~lPLs~~r~i~~L~~~S~i 211 (467)
T PTZ00206 139 VAATRAFHGFSACVAYVISVGDILSATLKGTNA-----PDFLKQK-SGNRLLT-SLMWLCFMLPLVIPRHIDSLRYVSTI 211 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc-----cchhhhc-cCcEEee-eehhhhHhhhcccccchHHHHHHHHH
Confidence 999999999999999999999999876653211 1111111 1122222 23445678999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCCC-----C--CCCCcccchhhhhhhhhhhhhhhhcccchhhhhhcCCCCc--
Q 013866 180 SVLLAVIFVAICSVMAIYAVWEGKSKTPKL-----L--PQLDNHVSVFDLFTAVPVIVTAFTFHFNVHPIGFEFDKPS-- 250 (435)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~--~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~-- 250 (435)
++.+.+...+.+++ +...++..+..+. + ++...++...+.+.++++++|||.||.+.+++++|||||+
T Consensus 212 ~~~~i~~~vi~ivi---~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~algi~~faF~~h~~~~~i~~~M~~~t~~ 288 (467)
T PTZ00206 212 AVSFMVYLVIVIVV---HSCMNGLPENIKNVSVGKDDNAEIILFNSGNRAIEGLGVFIFAYVFQITAYEVYMDMTNRSVG 288 (467)
T ss_pred HHHHHHHHHhhhhh---hhhcccCcccccccccCCCCCCceEEecCchHHHhhhhHHHhhhhhhhhhHHHHHhhcccchh
Confidence 98644433332222 2221221111000 0 0111111223578899999999999999999999999866
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhHHhHhcCCCcchhhhcCCCcCCcchhhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Q 013866 251 DMITAVRISLVICAAIYFSVGLFGYLLFGESIMSDILINFDQSSGSAISSLLNDLVRLSYALHLMLVFPMLNFSLRANID 330 (435)
Q Consensus 251 ~~~~~~~~s~~~~~~~y~~~~~~gy~~fg~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 330 (435)
|+.+++..++.+++++|..+|+.||+.||++++++++.|+++.+ ++...+.++...+.+..+||++.+|+|+.++
T Consensus 289 ~~~~v~~~s~~i~~~lY~~~G~~GYl~fG~~v~~~Illn~~p~~-----~~~~~v~~~~~~~~v~~sypL~~~p~r~~i~ 363 (467)
T PTZ00206 289 KFVLASTIAMGMCFTMYVLTAFFGYMDFGRNVTGSVLLMYDPVN-----EPAIMVGFVGVLVKLFVSYALLGMACRNALY 363 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccccccchHHHHhCCCCC-----CchhhHHHHHHHHHHHHhhhhhhhhHHHHHH
Confidence 88899999999999999999999999999999999999996543 3566677888899999999999999999999
Q ss_pred HhhccCCcccccccchhhhHHHHHHHHHHHHHhhcCCHHHHHHhhhhhhhhhHHHhhhhHHHHHh---cCCCCchhhhHH
Q 013866 331 ELLFSQKPLLAKDTKRFLSITLVLLVFSYTAAITIPDIWYFFQFLGSTSAVCLAFIFPGVIVLRD---VHGISTTRDRII 407 (435)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~p~~~~~~~~~G~~~~~~~~~i~P~~~~~~~---~~~~~~~~~~~~ 407 (435)
+....+.++ .+.+++...+..+.+.+.++|+++|+++.+++++|+++++.++|++|+++|++. ++++..+++.+.
T Consensus 364 ~~~~~~~~~--~~~~~~~~~~~~l~~~~l~iAi~vP~l~~vl~lvGa~~~~~l~fi~P~lf~l~~~~~~~~~~~~~~~~~ 441 (467)
T PTZ00206 364 DVIGWDARK--VAFWKHCIAVVTLSVVMLLCGLFIPKINTVLGFAGSISGGLLGFILPALLFMYSGGFTWQKVGPFYYIS 441 (467)
T ss_pred HHhCCCccc--CchhhHHHHHHHHHHHHHHHHhccCCHHHhhhhhhHHHHHHHHHHHHHHHHHhcCCccHHhhchHHHHH
Confidence 886333222 222333334455566778899999999999999999999999999999999983 233334445678
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhh
Q 013866 408 ATVMIVLAVVTSTIAISTNIYSSI 431 (435)
Q Consensus 408 ~~~~~~~g~v~~v~g~~~~i~~i~ 431 (435)
++.++++|++..+.|||+++++.+
T Consensus 442 ~~~lli~Gv~~~v~Gt~~si~~~~ 465 (467)
T PTZ00206 442 TYVVLITGVIAIVFGTGATIWGVT 465 (467)
T ss_pred HHHHHHHHhheEEecchhHhhHHh
Confidence 999999999999999999999876
No 2
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=4.8e-52 Score=389.41 Aligned_cols=384 Identities=22% Similarity=0.353 Sum_probs=321.8
Q ss_pred CCCCchHHHHHHHHHHHHhhhhchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHhhh------cCCCCHHHHHHHH
Q 013866 18 EKRPSVSGAVFNVATSIIGAGIMSIPATIKVLGVIPAFVLIVIIACLTDISVDFLMRYTNA------GETSTYAGVMRES 91 (435)
Q Consensus 18 ~~~~s~~~~~~~l~~~~iG~GiL~LP~~~~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~------~~~~~y~~l~~~~ 91 (435)
++..|..++..|+.+.++|+|+|++|+||+++|++.|.+..++.++++.|+++.+++|+++ ....+|.+.++.+
T Consensus 44 ~~~~s~~~tl~hl~k~~iGtG~l~lP~AFk~sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~~~~~y~~~~~~a 123 (449)
T KOG1304|consen 44 EHPTSATQTLIHLLKGSIGTGILSLPLAFKNSGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRGPSLDYAETAESA 123 (449)
T ss_pred CCCCchHHHHHHHHHhhhccccccChHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCccccHHHHHHHH
Confidence 4568999999999999999999999999999999999999999999999999999999763 2346777776655
Q ss_pred ----------hChhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCccccchhhhhhcCccccchHHHHHHHHHHHH
Q 013866 92 ----------FGRAGSVAVQLCVMITNLGCLIIFLIIIGDVLCGKQPEGSVHLGVLQEWFGFHWWNTRVFALLFVMVFVM 161 (435)
Q Consensus 92 ----------~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (435)
+|+++|.++++.++++++|.|++|+++++++++++.+.. . ...++.+.+.. +..+..
T Consensus 124 ~~~~~~~~r~~g~~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~~----------~-~~~~s~~~~i~--~~~~~~ 190 (449)
T KOG1304|consen 124 MEGGPGWLRKYGPAARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDEH----------S-PGVLSVRLYIL--IQLPPL 190 (449)
T ss_pred HcCCcHHHHhhcHHHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhcc----------C-CCCccHHHHHH--HHHHHH
Confidence 589999999999999999999999999999998776511 0 11133344333 344577
Q ss_pred hccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcccchhhhhhhhhhhhhhhhcccchhh
Q 013866 162 LPLALFRRVGSLRFSSAISVLLAVIFVAICSVMAIYAVWEGKSKTPKLLPQLDNHVSVFDLFTAVPVIVTAFTFHFNVHP 241 (435)
Q Consensus 162 ~pl~~~~~~~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~ 241 (435)
+++++.|+++.+...|.++.++.+ +.+++..++..+... +.++.|. ..++.++...+++.+|||+|+..+.|
T Consensus 191 lll~~Ir~Lk~Lsp~Sl~Anv~~~----~g~~ii~~y~~~~~~-~~~~~~~---~~~~~~~~lf~GtaifafEGig~VLP 262 (449)
T KOG1304|consen 191 LLLNLIRNLKILSPFSLFANVFIL----VGLAIIMYYLVQDLP-PTSDLPA---VTGWSGLPLFFGTAIFAFEGIGMVLP 262 (449)
T ss_pred HHHHHHHhhHHhhHHHHHHHHHHH----HHHHHHHHHHHhccC-Ccccccc---ccchhhhHHHHHHHHHHhccceEEEe
Confidence 888888888888877777775433 344445555554443 3233332 34567788889999999999999999
Q ss_pred hhhcCCCCchhH---HHHHHHHHHHHHHHHHHHhHHhHhcCCCcchhhhcCCCcCCcchhhhHHHHHHHHHHHHHHHHhh
Q 013866 242 IGFEFDKPSDMI---TAVRISLVICAAIYFSVGLFGYLLFGESIMSDILINFDQSSGSAISSLLNDLVRLSYALHLMLVF 318 (435)
Q Consensus 242 i~~~m~~p~~~~---~~~~~s~~~~~~~y~~~~~~gy~~fg~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (435)
++++||+|++++ +++..++.+++++|+.+|++||+.|||++++.++.|+|++ ++...+++++++.++.++
T Consensus 263 lEn~Mk~P~~F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~sITLNLP~~-------~l~~~Vkl~~ai~I~ls~ 335 (449)
T KOG1304|consen 263 LENSMKKPQKFPGPFGVLNLGMGIVTLLYIFLGFFGYLAFGDDVKGSITLNLPQE-------ILSQTVKLLLAIAIFLTY 335 (449)
T ss_pred hhhcccChhhcCCccchHHHHHHHHHHHHHHHHHHHHhhccccccceEEecCCcc-------HHHHHHHHHHHHHHHHcC
Confidence 999999999999 9999999999999999999999999999999999999985 899999999999999999
Q ss_pred hhhhhHHHHHHHHhhccCCcccccccchhhhHHHHHHHHHHHHHhhcCCHHHHHHhhhhhhhhhHHHhhhhHHHHHhcCC
Q 013866 319 PMLNFSLRANIDELLFSQKPLLAKDTKRFLSITLVLLVFSYTAAITIPDIWYFFQFLGSTSAVCLAFIFPGVIVLRDVHG 398 (435)
Q Consensus 319 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~p~~~~~~~~~G~~~~~~~~~i~P~~~~~~~~~~ 398 (435)
|++++|..+.+++.+.++.+. .+++......|..++.++..+|..+|+++.+++++|+++++.+.+++|++++++.+++
T Consensus 336 pLQ~yv~~eIi~~~i~~k~~~-~~~~~~~~~~R~~lVllt~~iA~~iPnL~~fisLVGs~~~s~L~li~P~liel~~~~~ 414 (449)
T KOG1304|consen 336 PLQFYVPIEIIEPGIRKKFSE-NRKKLLEYALRVFLVLLTFLIAVAVPNLALFISLVGSVSCSLLALIFPPLIELITFYP 414 (449)
T ss_pred chhhhhhHHHHHHhHHHhcCc-chhHHHHHHHHHHHHHHHHHHHHHCCcHHhhHHHHHHHHHHHHHHHccHHHHHHHhcc
Confidence 999999999999876444331 2233444678999999999999999999999999999999999999999999997654
Q ss_pred C---CchhhhHHHHHHHHHHHHHHHHHhHHHHHHh
Q 013866 399 I---STTRDRIIATVMIVLAVVTSTIAISTNIYSS 430 (435)
Q Consensus 399 ~---~~~~~~~~~~~~~~~g~v~~v~g~~~~i~~i 430 (435)
+ +.+|+.+.+.+++++|++.++.|||.++.|+
T Consensus 415 ~~~~~~~~~~~~ni~l~~~G~~~~v~Gty~si~~i 449 (449)
T KOG1304|consen 415 EGKGRFMWKLIKNIVLIVFGVFGFVYGTYTSIKEI 449 (449)
T ss_pred cccCceehHHHHHHHHHHHHHHHHHHHHhhhhhcC
Confidence 3 4568999999999999999999999999875
No 3
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=2.8e-49 Score=377.86 Aligned_cols=393 Identities=22% Similarity=0.369 Sum_probs=327.6
Q ss_pred CCCCchHHHHHHHHHHHHhhhhchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHhhhc------CCCCHHHHHHHH
Q 013866 18 EKRPSVSGAVFNVATSIIGAGIMSIPATIKVLGVIPAFVLIVIIACLTDISVDFLMRYTNAG------ETSTYAGVMRES 91 (435)
Q Consensus 18 ~~~~s~~~~~~~l~~~~iG~GiL~LP~~~~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~------~~~~y~~l~~~~ 91 (435)
+++.||++++++.++.++|.|+|+||+|++++||..|++++++.++++.||..+|.+|.+.+ +.++|.|+++++
T Consensus 35 ~~~~s~~~a~~~~i~~~~G~gvLsLP~A~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~~r~~~Y~dl~~~a 114 (437)
T KOG1303|consen 35 SRGGSWWQAAFHIINALIGAGVLSLPYALAQLGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPGKRRYRYPDLGQAA 114 (437)
T ss_pred CCCCcceehhhheehhhhhhhhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCChHHHHHHH
Confidence 77899999999999999999999999999999999999999999999999999999987642 345699999999
Q ss_pred hChhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCccccchhhhhhcCccccchHHHHHHHHHHHHhccccccccc
Q 013866 92 FGRAGSVAVQLCVMITNLGCLIIFLIIIGDVLCGKQPEGSVHLGVLQEWFGFHWWNTRVFALLFVMVFVMLPLALFRRVG 171 (435)
Q Consensus 92 ~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~ 171 (435)
||+++++++..++.+.+++.|+.|.+..+|+++.+++..+.+.. ..+.+.+.+ +..++.+|++++++++
T Consensus 115 fG~~~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~---------~l~~~~f~i--if~~i~~~~s~lp~~~ 183 (437)
T KOG1303|consen 115 FGPKGRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDN---------SLDKQYFII--IFGLIVLPLSQLPNFH 183 (437)
T ss_pred hCCCceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc---------cccceehhh--hHHHHHHHHHHCCCcc
Confidence 99988999999999999999999999999999887765443321 122233333 4456899999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--CCCCCCCCCcccchhhhhhhhhhhhhhhhcccchhhhhhcCCCC
Q 013866 172 SLRFSSAISVLLAVIFVAICSVMAIYAVWEGKSK--TPKLLPQLDNHVSVFDLFTAVPVIVTAFTFHFNVHPIGFEFDKP 249 (435)
Q Consensus 172 ~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p 249 (435)
++++.|..+.+++..+....+...+. ++... ..+..+..+ +....+++++++.|+|++|..+|+++++||+|
T Consensus 184 ~l~~~S~~~avmS~~~a~~~~~~g~~---~g~~~~~~~~~~~~~~---~~~~~f~a~g~iaFaf~gH~v~peIq~tMk~p 257 (437)
T KOG1303|consen 184 SLSYLSLVGAVMSTLYAVILIVLGIA---DGVGFCAPSGGYLDLG---TIPTVFTALGIIAFAYGGHAVLPEIQHTMKSP 257 (437)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhc---cccccCCcccCcccCC---CCcchhhhhhheeeeecCCeeeeehHhhcCCc
Confidence 99999999998777666555444433 22111 112222111 11112899999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhHHhHhcCCCcchhhhcCCCcCCcchhhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Q 013866 250 SDMITAVRISLVICAAIYFSVGLFGYLLFGESIMSDILINFDQSSGSAISSLLNDLVRLSYALHLMLVFPMLNFSLRANI 329 (435)
Q Consensus 250 ~~~~~~~~~s~~~~~~~y~~~~~~gy~~fg~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 329 (435)
.+++|++..++.+++.+|+..++.||++|||+++++++.|+.+. .|+...+++++.+|++.++..+..|..+.+
T Consensus 258 ~~f~~~~lis~~~~~~~y~~vai~GY~aFG~~~~~~il~s~~~p------~~~~~~ani~i~~h~i~s~~i~a~pl~~~~ 331 (437)
T KOG1303|consen 258 PKFKKALLISYIIVTFLYFPVAIIGYWAFGDSVPDNILLSLQPP------TWLIALANILIVLHLIGSYQIYAQPLFDVV 331 (437)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHhhhhhhccccchhhhhcccCc------hhHHHHHHHHHHHHHhhhhhhhhcchHHHH
Confidence 99999999999999999999999999999999999999999722 589999999999999999999999999999
Q ss_pred HHhhccCCcccc-cccchhhhHHHHHHHHHHHHHhhcCCHHHHHHhhhhhhhhhHHHhhhhHHHHHhcCCCCchhhhHHH
Q 013866 330 DELLFSQKPLLA-KDTKRFLSITLVLLVFSYTAAITIPDIWYFFQFLGSTSAVCLAFIFPGVIVLRDVHGISTTRDRIIA 408 (435)
Q Consensus 330 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~p~~~~~~~~~G~~~~~~~~~i~P~~~~~~~~~~~~~~~~~~~~ 408 (435)
|+.....+.+.. +....|...|..+++.+.++|..+|.|+++++++|+.....+.+++|+++|++.++.++...+.+.+
T Consensus 332 E~~~~~~~~~~~~~~~~~R~~~Rt~~v~~~~~vA~~~PfFg~l~~lvGa~~~~p~t~ilP~~~yl~~~k~~~~s~~~~~~ 411 (437)
T KOG1303|consen 332 EKLIGVKHPDFKKRSLVLRLLVRTFFVAVTTFVALSFPFFGDLLSLVGAFLFWPLTFILPCLMYLLIKKPKRFSPKWLLN 411 (437)
T ss_pred HHHhccCCccccccccceeeehhhHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Confidence 988754433211 1223456778899999999999999999999999999999999999999999987766666677778
Q ss_pred HHH-HHHHHHHHHHHhHHHHHHhhhc
Q 013866 409 TVM-IVLAVVTSTIAISTNIYSSIRN 433 (435)
Q Consensus 409 ~~~-~~~g~v~~v~g~~~~i~~i~~~ 433 (435)
+.. +.+|++.++.....++++++.+
T Consensus 412 ~~~~~~~~~~~~v~~~~~~~~~li~~ 437 (437)
T KOG1303|consen 412 WVIILVVGLLLSVLAAVGGVRSLIID 437 (437)
T ss_pred HHhhhhhhhhHHHHHHHHHHHHHhhC
Confidence 888 7999999999999999888754
No 4
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=100.00 E-value=1.1e-51 Score=405.38 Aligned_cols=387 Identities=28% Similarity=0.507 Sum_probs=321.4
Q ss_pred CCCchHHHHHHHHHHHHhhhhchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHhhh----cCCCCHHHHHHHHhCh
Q 013866 19 KRPSVSGAVFNVATSIIGAGIMSIPATIKVLGVIPAFVLIVIIACLTDISVDFLMRYTNA----GETSTYAGVMRESFGR 94 (435)
Q Consensus 19 ~~~s~~~~~~~l~~~~iG~GiL~LP~~~~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~----~~~~~y~~l~~~~~G~ 94 (435)
+|.|+++++++++|+++|+|+|++|++|+++||+.|++++++++.++.++.+++.|+.++ ++..+|+|++++.+||
T Consensus 1 ~~~s~~~~~~~l~~~~iG~G~L~lP~af~~~G~~~g~i~l~~~~~~s~~t~~~l~~~~~~~~~~~~~~~y~~l~~~~~G~ 80 (409)
T PF01490_consen 1 HKGSWFSAFFNLINSIIGAGILSLPYAFAQSGWVLGIILLVLVALLSYYTMYLLVRAANAMPNGTGRRSYGDLARRAFGP 80 (409)
T ss_pred CCccHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccc
Confidence 578999999999999999999999999999999999999999999999999999998874 5799999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCccccchhhhhhcCccccchHHHHHHHHHHHHhccccccccchhh
Q 013866 95 AGSVAVQLCVMITNLGCLIIFLIIIGDVLCGKQPEGSVHLGVLQEWFGFHWWNTRVFALLFVMVFVMLPLALFRRVGSLR 174 (435)
Q Consensus 95 ~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~l~ 174 (435)
++++++++++.+.++|.+++|++..+|.+++++++...+ ... .+..+. ++..++++|+++.|++++++
T Consensus 81 ~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~----------~~~-~~~~~~-~i~~~i~~pls~~~~l~~l~ 148 (409)
T PF01490_consen 81 KGKWFVDICIFIYLFGSCVAYLIIIGDSLSSLIPSFFGD----------LFI-SRYVWI-IIFALIVLPLSFLKNLKSLR 148 (409)
T ss_pred cccccccchheeccccccceeEEEeeeeeeccccccccc----------ccc-cccccc-cccccccccccccchhhHHH
Confidence 999999999999999999999999999999888754322 001 222222 34556899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCC--CCcccchhhhhhhhhhhhhhhhcccchhhhhhcCCCCchh
Q 013866 175 FSSAISVLLAVIFVAICSVMAIYAVWEGKSKTPKLLPQ--LDNHVSVFDLFTAVPVIVTAFTFHFNVHPIGFEFDKPSDM 252 (435)
Q Consensus 175 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~ 252 (435)
+.|.++.++....+.+.+... .+.....++..+. .....++.+++.++++++|||.+|.++|++++|||+|+++
T Consensus 149 ~~s~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~~~~~ 224 (409)
T PF01490_consen 149 YLSILGLFSIFYFIVIVVIYI----ISYGPGEPSGVPSPPVWPFISFSGFFSAFGIIIFAFSCHPNLPPIQSEMKDPSKF 224 (409)
T ss_pred HHhhhhhhccceeeeeeccee----eeeecccccccccccccccchhhHHHHhhhhhhhhhhcccccceeeeeccCCccc
Confidence 999999875443211111111 1111111111111 1123456789999999999999999999999999999976
Q ss_pred H---HHHHHHHHHHHHHHHHHHhHHhHhcCCCcchhhhcCCCcCCcchhhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Q 013866 253 I---TAVRISLVICAAIYFSVGLFGYLLFGESIMSDILINFDQSSGSAISSLLNDLVRLSYALHLMLVFPMLNFSLRANI 329 (435)
Q Consensus 253 ~---~~~~~s~~~~~~~y~~~~~~gy~~fg~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 329 (435)
+ ++...++.+++++|..+|+.||++||+++++++++|++++ ++...++++++.++++.++|++.+|.++.+
T Consensus 225 ~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~~~il~n~~~~------~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l 298 (409)
T PF01490_consen 225 KKMKKVLSISMIICFIIYLLFGIFGYLAFGDSVQGNILLNLPND------DVLIIIARILLVISLLLSYPLQLFPARNSL 298 (409)
T ss_pred cccceeeeehhhhhhHHhhhhhhcccceeeeeecchhhhcCCCc------ccccccccccchhhhhhccccccchhHhhh
Confidence 6 9999999999999999999999999999999999999997 468889999999999999999999999999
Q ss_pred HHhhccC------C-cccccccchhhhHHHHHHHHHHHHHhhcCCHHHHHHhhhhhhhhhHHHhhhhHHHHHhcCCCCch
Q 013866 330 DELLFSQ------K-PLLAKDTKRFLSITLVLLVFSYTAAITIPDIWYFFQFLGSTSAVCLAFIFPGVIVLRDVHGISTT 402 (435)
Q Consensus 330 ~~~~~~~------~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~p~~~~~~~~~G~~~~~~~~~i~P~~~~~~~~~~~~~~ 402 (435)
++...+. + .+.+.++.+|...|+.++.++.++|..+||++++++++|++++..++|++|+++|++.+++++.+
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iA~~vp~~~~i~~l~Ga~~~~~i~fi~P~l~~~~~~~~~~~~ 378 (409)
T PF01490_consen 299 ENLLFKRAASSRDSPKNTPSSRWLRYLIRIILVLLSFLIAIFVPNFGDIISLVGALFGSFISFILPALLYLKLFKRKRNS 378 (409)
T ss_pred hhheeccccccccccccccccceeeeeeecchhhhhhhhhhhccchhhhhcccchHHHHhHHHHHHHHHHHHhhcccccc
Confidence 9988753 1 11123345567778889999999999999999999999999999999999999999987665433
Q ss_pred hhh-----HHHHHHHHHHHHHHHHHhHHHH
Q 013866 403 RDR-----IIATVMIVLAVVTSTIAISTNI 427 (435)
Q Consensus 403 ~~~-----~~~~~~~~~g~v~~v~g~~~~i 427 (435)
+++ ...+..+.+|++.++.|+|+++
T Consensus 379 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i 408 (409)
T PF01490_consen 379 FGWWWILSILNWIIIVFGVVLMVFGTYQSI 408 (409)
T ss_pred cceeehhhccceEEEEEeeehhHHhHHHHc
Confidence 322 4578889999999999999876
No 5
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=100.00 E-value=9.2e-46 Score=352.14 Aligned_cols=404 Identities=34% Similarity=0.590 Sum_probs=338.4
Q ss_pred CCCCchHHHHHHHHHHHHhhhhchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHhChhHH
Q 013866 18 EKRPSVSGAVFNVATSIIGAGIMSIPATIKVLGVIPAFVLIVIIACLTDISVDFLMRYTNAGETSTYAGVMRESFGRAGS 97 (435)
Q Consensus 18 ~~~~s~~~~~~~l~~~~iG~GiL~LP~~~~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~y~~l~~~~~G~~~~ 97 (435)
+++.|.+.+++|+.|+++|+|++++|++|++.|.+.|++++.++++++.++.+++.+++++.+.++|+++++..+|+.++
T Consensus 3 ~~~~s~~~~v~nl~~ti~GaGIl~~P~afk~~Giv~gi~li~~~a~~s~~sl~~l~~~a~~~~~~ty~~l~~~~~g~~g~ 82 (411)
T KOG1305|consen 3 SGKTSFRSAVFNLVNTIMGAGILAMPYAFKTAGLLLGILLIVLSAFLSLLSLYLLSKCAKKSGERTYSSLGDLIFGKLGK 82 (411)
T ss_pred CCccchhhhHHHHHhhhhccHHHHhHHHHHHhcHHHHHHHHHHHHHHHHhHHHHHHHhhhhcCCCCHHHHHHHHcCCCce
Confidence 56779999999999999999999999999999999999999999999999999999999988888999999999999997
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCccccchhhhhhcCccccchHHHHHHHHHHHHhccccccccchhhHHH
Q 013866 98 VAVQLCVMITNLGCLIIFLIIIGDVLCGKQPEGSVHLGVLQEWFGFHWWNTRVFALLFVMVFVMLPLALFRRVGSLRFSS 177 (435)
Q Consensus 98 ~~~~~~~~~~~~g~~~~y~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~l~~~s 177 (435)
............| ++.|++.++|.++...... ..+++.+.. +..|.+.+++....+++|+++.|+++++++.|
T Consensus 83 ~~~~v~~~~~~~g-~i~yliiigd~~p~~~~~~-----~~~~~~~~~-~~~~~~~ill~~~~~i~pLsl~k~l~~Lk~tS 155 (411)
T KOG1305|consen 83 VDAAVAVKCFGVG-MVSYLIIIGDLLPGFIRSL-----FLDEEGGSH-YLDRNFLILLVLLFIILPLSLLKNLDSLKYTS 155 (411)
T ss_pred eeehhhHHhhhcc-ceEEEEEEccccchhhhhc-----ccccccccc-cccceeEeehHHHHHHHHHHHHHhhhhHHHHH
Confidence 7777777777777 7999999999997543321 112222222 34455544556677999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcccchhhhhhhhhhhhhhhhcccchhhhhhcCCCCc--hhHHH
Q 013866 178 AISVLLAVIFVAICSVMAIYAVWEGKSKTPKLLPQLDNHVSVFDLFTAVPVIVTAFTFHFNVHPIGFEFDKPS--DMITA 255 (435)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~--~~~~~ 255 (435)
.++++..+.++.+++ ++...+....++..+..++...+++.+.++++++|+|.||+|..++++|||||+ +++++
T Consensus 156 ~~s~~~~~~fv~~vv----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~faf~Ch~n~~~i~~El~~~s~~~i~~v 231 (411)
T KOG1305|consen 156 ALSLASVVYFVVLVV----YKYFQGPCALGRLSYLVPNLSSFSSLFYALPIFVFAFTCHSNVFPIYNELKDRSVKKIQRV 231 (411)
T ss_pred HHHHHHHHHHHHHHH----HHHHhcccccCCcccccCCcchhhhhhhhhhhhheeeeccccceeeeeeeeCchHHHHHHH
Confidence 999976665554433 232222211111122122222236899999999999999999999999999999 79999
Q ss_pred HHHHHHHHHHHHHHHHhHHhHhcCCCcchhhhcCCCcCCcchhhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhcc
Q 013866 256 VRISLVICAAIYFSVGLFGYLLFGESIMSDILINFDQSSGSAISSLLNDLVRLSYALHLMLVFPMLNFSLRANIDELLFS 335 (435)
Q Consensus 256 ~~~s~~~~~~~y~~~~~~gy~~fg~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 335 (435)
...+...+..+|..+|..||+.|||++.+|++.++++..+..+.++.....+..++++.+.++|+..+|+|..+++..++
T Consensus 232 ~~~~~~~~~~iy~~~g~~GYL~Fg~~v~~n~l~~~~~~~~~~l~~~~~~~vr~~~~~~~~l~~pi~~fPlr~~l~~~~~~ 311 (411)
T KOG1305|consen 232 SNIAIILATLIYLLTGLFGYLTFGDLVKGNLLHNYDSILNNLLRSFPLLCVRLRIAVAVLLTFPIVLFPLRMNLDELLFP 311 (411)
T ss_pred HHHHHHHHHHHHHHHHHhhhheecccchHHHHhcCCcccchhHhhhhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHhcc
Confidence 99999999999999999999999999999999999998765555567789999999999999999999999999998887
Q ss_pred CCccc-ccccchhhhHHHHHHHHHHHHHhhcCCHHHHHHhhhhhhhhhHHHhhhhHHHHHhcCCCCchhhhHHHHHHHHH
Q 013866 336 QKPLL-AKDTKRFLSITLVLLVFSYTAAITIPDIWYFFQFLGSTSAVCLAFIFPGVIVLRDVHGISTTRDRIIATVMIVL 414 (435)
Q Consensus 336 ~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~p~~~~~~~~~G~~~~~~~~~i~P~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (435)
++.+. +++++|+...+..++..+.+.++.+|+.+++.+++|++++..++|++|+.+|++..|+ ..+++...+....+
T Consensus 312 ~~~~~~~~s~~r~~~itl~ll~~~~l~ai~~p~i~~i~~~vGAT~~~~i~FI~P~~~yl~~~~~--~~~~~~~~~~~~~~ 389 (411)
T KOG1305|consen 312 YQPGLTSFSGKRHFVITLLLLIFTFLLAIFVPSIGTIFGFVGATSSTSISFILPALYYLKASKK--KSREPLGALIFLIL 389 (411)
T ss_pred cCCCCCCccceehhHHHHHHHHHHHHHHHHhccHHHHHHHhhhhhhhhhHHHHHHHhhheeecc--ccccchHHHHHHHH
Confidence 76542 3556788888999999999999999999999999999999999999999999998776 67788889999999
Q ss_pred HHHHHHHHhHHHHHHhhhcC
Q 013866 415 AVVTSTIAISTNIYSSIRNK 434 (435)
Q Consensus 415 g~v~~v~g~~~~i~~i~~~~ 434 (435)
++...+.|+...+.+++.+.
T Consensus 390 ~~~~~i~~~~~~i~~~~~~~ 409 (411)
T KOG1305|consen 390 GVLLSIIGVAVMIYDLLAKN 409 (411)
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999998764
No 6
>PLN03074 auxin influx permease; Provisional
Probab=100.00 E-value=1e-44 Score=355.07 Aligned_cols=382 Identities=14% Similarity=0.112 Sum_probs=299.9
Q ss_pred CCCCchHHHHHHHHHHHHhhhhchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHhhh----cC--C-------CCH
Q 013866 18 EKRPSVSGAVFNVATSIIGAGIMSIPATIKVLGVIPAFVLIVIIACLTDISVDFLMRYTNA----GE--T-------STY 84 (435)
Q Consensus 18 ~~~~s~~~~~~~l~~~~iG~GiL~LP~~~~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~----~~--~-------~~y 84 (435)
.++.+..++.+++.+..+|.|+|+||++|+++||+.|++.+++.+.++.|+.+++.++..+ ++ . .+|
T Consensus 43 ~~~~s~~~~~~~l~~~~vG~GILaLP~Af~~~G~v~Gii~lv~~~~l~~Yt~~lL~~~~~~~~~r~~~~~~~~~~~~~~~ 122 (473)
T PLN03074 43 WHGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGMLSGILFQIFYGLLGSWTAYLISVLYVEYRARKEREKVDFKNHVIQW 122 (473)
T ss_pred cCCchHHHHHHHHHHHHHhHHHHhHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCchhHHHHHH
Confidence 5678999999999999999999999999999999999999999999999999999886421 11 1 267
Q ss_pred HHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCccccchhhhhhcCccccchHHHHHHHHHHHHhcc
Q 013866 85 AGVMRESFGRAGSVAVQLCVMITNLGCLIIFLIIIGDVLCGKQPEGSVHLGVLQEWFGFHWWNTRVFALLFVMVFVMLPL 164 (435)
Q Consensus 85 ~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl 164 (435)
.|+++..+||+++.+..+....++++.|+.|.+..++.+..+-+ ..+.+.+..+ ...+.+|+
T Consensus 123 ~e~~~~~~G~~~~~~~~~~~~v~l~~~~v~~li~~~~~~~~l~~----------------~~~~~~~~~i--~~~v~~~~ 184 (473)
T PLN03074 123 FEVLDGLLGPYWKNVGLAFNCTFLLFGSVIQLIACASNIYYIND----------------NLDKRTWTYI--FGACCATT 184 (473)
T ss_pred HHHHHHhcChhHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhCC----------------CcCCCeEEee--hHHHHHHH
Confidence 88999999999999999999999999999999988876643311 0223332222 23456677
Q ss_pred ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcccchhhhhhhhhhhhhhhhcccchhhhhh
Q 013866 165 ALFRRVGSLRFSSAISVLLAVIFVAICSVMAIYAVWEGKSKTPKLLPQLDNHVSVFDLFTAVPVIVTAFTFHFNVHPIGF 244 (435)
Q Consensus 165 ~~~~~~~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~ 244 (435)
+++|++++++++|.++..+++.....++...+. ++..+ ..+. +...++...+.++++++|+|++|..+|++++
T Consensus 185 ~~i~sl~~l~~~S~ig~~~tl~~av~i~i~~i~---~~~~~---~~~~-~~~~~~~~~f~~~~~i~faf~g~~v~~~I~~ 257 (473)
T PLN03074 185 VFIPSFHNYRIWSFLGLLMTTYTAWYMTIAALS---HGQVE---GVKH-SGPTKLVLYFTGATNILYTFGGHAVTVEIMH 257 (473)
T ss_pred HHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hcCCC---CCCC-CCchhHHHHHHHHHHHHHHhcccccHHHHHH
Confidence 889999999999999986544332222222221 22111 1111 1123456777888889999999999999999
Q ss_pred cCCCCchhHHHHHHHHHHHHHHHHHHHhHHhHhcCCCcc--hhhhcCCCcCCcchhhhHHHHHHHHHHHHHHHHhhhhhh
Q 013866 245 EFDKPSDMITAVRISLVICAAIYFSVGLFGYLLFGESIM--SDILINFDQSSGSAISSLLNDLVRLSYALHLMLVFPMLN 322 (435)
Q Consensus 245 ~m~~p~~~~~~~~~s~~~~~~~y~~~~~~gy~~fg~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 322 (435)
|||||+|+++....+...++.+|+.+++.||+.|||++. ++.+.|++++ .....+++++.++.+.+|++++
T Consensus 258 ~M~~P~~F~~~~~l~~~~v~~~y~~~~~~gY~~fG~~~~~~s~~l~~lp~~-------~~~~~~~~~~~i~~~~sy~l~~ 330 (473)
T PLN03074 258 AMWKPQKFKYIYLAATLYVLTLTLPSAAAVYWAFGDELLTHSNAFSLLPRS-------GWRDAAVILMLIHQFITFGFAC 330 (473)
T ss_pred hccChhcccchHHHHHHHHHHHHHHHHHeeeeeechhhhhchhHHhcCCCc-------hHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999876 4556667754 3456888999999999999999
Q ss_pred hHHHHHHHHhhccCCcccccccchhhhHHHHHHHHHHHHHhhcCCHHHHHHhhhhhhhhhHHHhhhhHHHHHhcCCC---
Q 013866 323 FSLRANIDELLFSQKPLLAKDTKRFLSITLVLLVFSYTAAITIPDIWYFFQFLGSTSAVCLAFIFPGVIVLRDVHGI--- 399 (435)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~p~~~~~~~~~G~~~~~~~~~i~P~~~~~~~~~~~--- 399 (435)
.|..+..|+.... +. .++...+...|..++..++++|..+|+|+++++++|+++++.+++++|+++|++.++++
T Consensus 331 ~p~~~~~e~~~~~-~~--~k~~~~r~~~R~~lv~~~~~iA~~IP~fg~llsLvGs~~~s~l~~i~P~l~~l~~~~~~~~~ 407 (473)
T PLN03074 331 TPLYFVWEKAIGV-HD--TKSICLRALARLPVVVPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPSLAHMLTYRSASAR 407 (473)
T ss_pred hhHHHHHHHHhcc-cc--cccHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhh
Confidence 9999988877532 21 12334456789999999999999999999999999999999999999999999855432
Q ss_pred ----------Cchh--hhHHHHHHHHH-HHHHHHHHhHHHHHHhhhcC
Q 013866 400 ----------STTR--DRIIATVMIVL-AVVTSTIAISTNIYSSIRNK 434 (435)
Q Consensus 400 ----------~~~~--~~~~~~~~~~~-g~v~~v~g~~~~i~~i~~~~ 434 (435)
.++| +.+.++.++++ |++..+.|+|+++.+++++.
T Consensus 408 ~~~~~~~~~~~~~~~~~~~~n~~iiv~~~~~g~~~G~~asi~~ii~~~ 455 (473)
T PLN03074 408 QNAAEKPPFFLPSWTGMYVVNAFVVVWVLVVGFGFGGWASMTNFVRQI 455 (473)
T ss_pred hhcccCCcccCCccceehhhhhHHHHhhhhHhhccchHHHHHHHHHhh
Confidence 1122 45889999986 55546899999999999875
No 7
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=1.8e-38 Score=280.61 Aligned_cols=386 Identities=18% Similarity=0.278 Sum_probs=316.1
Q ss_pred CCCCchHHHHHHHHHHHHhhhhchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHhhhc--------CCCCHHHHHH
Q 013866 18 EKRPSVSGAVFNVATSIIGAGIMSIPATIKVLGVIPAFVLIVIIACLTDISVDFLMRYTNAG--------ETSTYAGVMR 89 (435)
Q Consensus 18 ~~~~s~~~~~~~l~~~~iG~GiL~LP~~~~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~--------~~~~y~~l~~ 89 (435)
+.+++-+|+..|..|++=|.=+++||+|....|| +++.+++.++.+++||..+|++|.-.+ .+.+|.+++.
T Consensus 114 ~~kI~a~qAaWNVTNAIQGMFivgLP~AvlhGGy-w~i~amvg~A~vCcyTGk~Li~CLYE~~~dGevVrvRdsYvaIA~ 192 (524)
T KOG4303|consen 114 SEKISALQAAWNVTNAIQGMFIVGLPIAVLHGGY-WSIGAMVGVAYVCCYTGKLLIECLYENGEDGEVVRVRDSYVAIAD 192 (524)
T ss_pred CCccHHHHHhhhhhhhhheeeEeccceeeeEcch-hHHHHHHhhhhhhhccchhhhhhhccCCCCCcEEEeehhHHHHHH
Confidence 5678999999999999999999999999999997 599999999999999999999997432 3679999999
Q ss_pred HHhCh-hHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCccccchhhhhhcCccccchHHHHHHHHHHHHhcccccc
Q 013866 90 ESFGR-AGSVAVQLCVMITNLGCLIIFLIIIGDVLCGKQPEGSVHLGVLQEWFGFHWWNTRVFALLFVMVFVMLPLALFR 168 (435)
Q Consensus 90 ~~~G~-~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~ 168 (435)
.++++ .|++.+.+.+.+.+..+|+.|.+..||.+..-+|+.. .+.+.|.+ +....++|..++|
T Consensus 193 ~C~~P~lGgr~V~~AQliELlmTCIlYvVv~gdLl~~~fP~~s--------------vd~~sWm~--i~~a~LLpc~FLk 256 (524)
T KOG4303|consen 193 FCYKPGLGGRWVLAAQLIELLMTCILYVVVAGDLLQSCFPGLS--------------VDKASWMM--ITSASLLPCSFLK 256 (524)
T ss_pred HhcCCCcchheeeHHHHHHHHHHHHhhhheechhhhccCCCCC--------------ccccchhh--hhhHHHhhhHHHH
Confidence 98885 4559999999999999999999999999987766421 22333333 2345799999998
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcccchhhhhhhhhhhhhhhhcccchhhhhhcCCC
Q 013866 169 RVGSLRFSSAISVLLAVIFVAICSVMAIYAVWEGKSKTPKLLPQLDNHVSVFDLFTAVPVIVTAFTFHFNVHPIGFEFDK 248 (435)
Q Consensus 169 ~~~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~ 248 (435)
+++..+..|++..+.-++.=++.+.++..+. +++. |.+..-..+..++..++++++|+|..|..+|++...|++
T Consensus 257 ~Lk~VS~lSf~ct~sH~viN~i~v~YCLs~~--~dW~----wskv~Fsidi~~fPisvG~iVFsYTSqIFLP~LEGNM~~ 330 (524)
T KOG4303|consen 257 DLKIVSRLSFFCTISHLVINLIMVLYCLSFV--SDWS----WSKVTFSIDINTFPISVGMIVFSYTSQIFLPNLEGNMKN 330 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhcc----ceeEEEEEEcccCceEEEEEEEeeeceeeccccccccCC
Confidence 8877666666655433333333333333322 2222 222222234456778899999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHhHHhHhcCCCcchhhhcCCCcCCcchhhhHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Q 013866 249 PSDMITAVRISLVICAAIYFSVGLFGYLLFGESIMSDILINFDQSSGSAISSLLNDLVRLSYALHLMLVFPMLNFSLRAN 328 (435)
Q Consensus 249 p~~~~~~~~~s~~~~~~~y~~~~~~gy~~fg~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 328 (435)
|+++...+.++=+...++-..+|..||++|||.+++.++.|+++. .+..+++++..+.-+.+||+..+...+.
T Consensus 331 ps~Fn~Ml~WsHIAAaVfK~~Fg~~~fLTf~~~TqevItnnLp~q-------sfk~~VN~fLV~KALLSYPLPfyAAvel 403 (524)
T KOG4303|consen 331 PSQFNVMLKWSHIAAAVFKVVFGMLGFLTFGELTQEVITNNLPNQ-------SFKILVNLFLVVKALLSYPLPFYAAVEL 403 (524)
T ss_pred hhHheeeeehHHHHHHHHHHHHHHheeeeechhhHHHHhcCCCcc-------chhhhhhHHHHHHHHHcCCchHHHHHHH
Confidence 999999999999999999999999999999999999999999985 5677899999999999999999999999
Q ss_pred HHHhhccCCcccc-------c-ccchh-hhHHHHHHHHHHHHHhhcCCHHHHHHhhhhhhhhhHHHhhhhHHHHHhcCCC
Q 013866 329 IDELLFSQKPLLA-------K-DTKRF-LSITLVLLVFSYTAAITIPDIWYFFQFLGSTSAVCLAFIFPGVIVLRDVHGI 399 (435)
Q Consensus 329 ~~~~~~~~~~~~~-------~-~~~~~-~~~~~~~~~~~~~~a~~~p~~~~~~~~~G~~~~~~~~~i~P~~~~~~~~~~~ 399 (435)
+|+-++..-.+.. + +.+.| +..|+.+++.+.++|+.+|.|..+++++|++.++.++|++|++||++.+++.
T Consensus 404 Le~nlF~g~p~t~Fpscys~Dg~Lk~WgltlR~~lvvfTllmAi~vPhf~~LMGl~Gs~TGtmLsFiwP~lFHl~ik~~~ 483 (524)
T KOG4303|consen 404 LENNLFLGYPQTPFPSCYSPDGSLKEWGLTLRIILVVFTLLMAISVPHFVELMGLVGSITGTMLSFIWPALFHLYIKEKT 483 (524)
T ss_pred HHHhhhcCCCCCCCceeeCCCcchhhheeeeeeHHHHHHHHHHHHhHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHh
Confidence 9988775433211 1 12233 3468888999999999999999999999999999999999999999998887
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHhHHHHHHhhhc
Q 013866 400 STTRDRIIATVMIVLAVVTSTIAISTNIYSSIRN 433 (435)
Q Consensus 400 ~~~~~~~~~~~~~~~g~v~~v~g~~~~i~~i~~~ 433 (435)
....++..+..++.+|..+++.|.|.+-.++++.
T Consensus 484 L~~~e~~fD~~Ii~~G~~~~vsG~y~S~~~Li~A 517 (524)
T KOG4303|consen 484 LNNFEKRFDQGIIIMGCSVCVSGVYFSSMELIRA 517 (524)
T ss_pred hhhHHHhhheeEEEEeeeEEEEeEehhhHHHHHH
Confidence 7788999999999999999999999999888764
No 8
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=100.00 E-value=2.2e-33 Score=271.40 Aligned_cols=396 Identities=19% Similarity=0.268 Sum_probs=298.0
Q ss_pred CCCCCCCchHHHHHHHHHHHHhhhhchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC--CHHHHHHHHh
Q 013866 15 SKTEKRPSVSGAVFNVATSIIGAGIMSIPATIKVLGVIPAFVLIVIIACLTDISVDFLMRYTNAGETS--TYAGVMRESF 92 (435)
Q Consensus 15 ~~~~~~~s~~~~~~~l~~~~iG~GiL~LP~~~~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~--~y~~l~~~~~ 92 (435)
++.+++.+..++++++.++++|+|+|++|++++..|++.+++++++.+.++.++.+++.|+..+.+.. ++.+++++.+
T Consensus 3 ~~~~~~~s~~~~vl~l~gT~IGAGvL~lP~a~~~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~~~~~~~~~~~~~~ 82 (415)
T COG0814 3 SSMKKTSSDLGGVLILAGTAIGAGVLFLPVAFGGGGFWPGLLLLIIAWPLTYLSLLLLLEALLSSPNGKASITSLVEDYL 82 (415)
T ss_pred ccccCCcchHHHHHHHHccccccchhhhhHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHh
Confidence 34577889999999999999999999999999999999999999999999999999999998876654 9999999999
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCccccchhhhhhcCccccchHHHHHHHHHHHHhccccccccch
Q 013866 93 GRAGSVAVQLCVMITNLGCLIIFLIIIGDVLCGKQPEGSVHLGVLQEWFGFHWWNTRVFALLFVMVFVMLPLALFRRVGS 172 (435)
Q Consensus 93 G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~ 172 (435)
||+++++.++.+.+.+++.+.+|....++.+++.+++..+. ... .|....++. ..++.++++.++...
T Consensus 83 G~~~~~li~~s~~~~~~~~~~aY~~~~g~~l~~~~~~~~~~----------~~~-~r~~~~lif-~~~~~~l~~~~~~~~ 150 (415)
T COG0814 83 GKKGGILIGLSYFFALYGLLVAYIVGIGNLLASFLGNQFGL----------NPL-PRKLGSLIF-ALVLAFLSWLGTLAV 150 (415)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHhhccc----------CCc-chHHHHHHH-HHHHHHHHHhchhHH
Confidence 99999999999999999999999999999998766542211 101 244344333 345666899999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcccchhhhhhhhhhhhhhhhcccchhhhhhcCCCCc-h
Q 013866 173 LRFSSAISVLLAVIFVAICSVMAIYAVWEGKSKTPKLLPQLDNHVSVFDLFTAVPVIVTAFTFHFNVHPIGFEFDKPS-D 251 (435)
Q Consensus 173 l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~-~ 251 (435)
+++.+.+.......+.+. ..+...+-+.+.....|..+ ...+.++..++|+++|||++|+++|++.+|||+++ +
T Consensus 151 lk~ts~l~~~~v~~~~~l----~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~~~~~~~ 225 (415)
T COG0814 151 LKITSLLVFGKVIYLVLL----VVYLIPHWNPANLFALPSAS-QSFWKYLLLAIPVFVFSFGFHGNIPSLVNYMRKNSKK 225 (415)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHhcccCHHHHhcccccc-hhhHHHHHHHhhHHHhhhhCCccchHHHHHhccchhH
Confidence 999998887543333222 22222221111111222111 24567899999999999999999999999999888 4
Q ss_pred -hHHHHHHHHHHHHHHHHHHHhHHhHhcCCCcchhhhcCCCcCCcc-------hhhhHHHHHHHHHHHHHHHHhhhhhhh
Q 013866 252 -MITAVRISLVICAAIYFSVGLFGYLLFGESIMSDILINFDQSSGS-------AISSLLNDLVRLSYALHLMLVFPMLNF 323 (435)
Q Consensus 252 -~~~~~~~s~~~~~~~y~~~~~~gy~~fg~~~~~~i~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~p~~~~ 323 (435)
.+|+..++..+..++|..+++.+|..+|+++.++++++++++... ...+......+++..+.+..+|-....
T Consensus 226 ~~~k~~~~~~~~~~vlyi~~~~~~~~~~~~~~~~~il~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~Ai~tSFlgv~l 305 (415)
T COG0814 226 AVRKAILIGSLIALVLYILVGFFVFGCFGSLVFGNILAAKEQNISLLSALAGVINSPILSIALNIFALFAIATSFLGVYL 305 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHccCchHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHhCchh
Confidence 999999999999999999999999999999999999999776421 111234555666666666666666666
Q ss_pred HHHHHHHHhhccCCccc-c--cccchhhhHHHHHHHHHHHHHhhcCCHHHHHHhhhhhhhhhHHHhhhhHHHHHhcCCCC
Q 013866 324 SLRANIDELLFSQKPLL-A--KDTKRFLSITLVLLVFSYTAAITIPDIWYFFQFLGSTSAVCLAFIFPGVIVLRDVHGIS 400 (435)
Q Consensus 324 ~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~a~~~p~~~~~~~~~G~~~~~~~~~i~P~~~~~~~~~~~~ 400 (435)
..++..++...+++.+. + ...+.+....+.........+...|..+.+++.+|+...+.++++.|...+.+....++
T Consensus 306 g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~iga~i~~~ll~~~p~~~~~~~~~~~~ 385 (415)
T COG0814 306 GLFEGLADLFKKSNSKPGRKKTGLLTFLPPLIFALLYPWGFAIALGYAGGLIATIGAPIIPALLFIKPRKLIYKLPALKV 385 (415)
T ss_pred hHHHhhhHHHHhccCcccchhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceee
Confidence 66777777665411111 1 11122334445555667777788888888999999999999999999988877554433
Q ss_pred chhhhHHHHHHHHHHHHHHHHHhHHHH
Q 013866 401 TTRDRIIATVMIVLAVVTSTIAISTNI 427 (435)
Q Consensus 401 ~~~~~~~~~~~~~~g~v~~v~g~~~~i 427 (435)
.+.++....+++++|++.++.-.++..
T Consensus 386 ~~g~~~~~~~v~~~Gi~~~~~~~~~~~ 412 (415)
T COG0814 386 YGGNFLLLLLVLLFGILVILSPFLATF 412 (415)
T ss_pred cCCCchhHHHHHHHHHHHHHHHHHHHh
Confidence 343336888999999998887777553
No 9
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=99.96 E-value=7.9e-26 Score=217.38 Aligned_cols=371 Identities=18% Similarity=0.242 Sum_probs=260.3
Q ss_pred CCCchHHHHHHHHHHHHhhhhchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHhhh-cCCCCHHHHHHHHhChhHH
Q 013866 19 KRPSVSGAVFNVATSIIGAGIMSIPATIKVLGVIPAFVLIVIIACLTDISVDFLMRYTNA-GETSTYAGVMRESFGRAGS 97 (435)
Q Consensus 19 ~~~s~~~~~~~l~~~~iG~GiL~LP~~~~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~-~~~~~y~~l~~~~~G~~~~ 97 (435)
|+.+.+++++.+.++++|+|+|+||.+.+..|..++.+.+++++.++.++..++.|...+ .+..+|.+++++.+||+++
T Consensus 1 ~~~~~~~~~~li~GTaIGAGmLaLP~~~~~~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~~~~~~~~~~a~~~lG~~g~ 80 (394)
T PF03222_consen 1 KNNSILGGVLLIAGTAIGAGMLALPIATAGAGFLPSLILLLIAWPLMYYSGLLLAEVSLNTPEGSSLTSMAEKYLGKKGG 80 (394)
T ss_pred CCchHHHHHHHHHHccHhHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhChHHH
Confidence 467889999999999999999999999999999999999999999999999999997654 4689999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCccccchhhhhhcCccccchHHHHHHHHHHHHhccccccccchhhHHH
Q 013866 98 VAVQLCVMITNLGCLIIFLIIIGDVLCGKQPEGSVHLGVLQEWFGFHWWNTRVFALLFVMVFVMLPLALFRRVGSLRFSS 177 (435)
Q Consensus 98 ~~~~~~~~~~~~g~~~~y~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~l~~~s 177 (435)
++..+.+.+..++.+.+|..-.++.+++.+++..+ .+ .+.+....++......+-....|-+++....-
T Consensus 81 ~~~~~~~~~~~y~ll~AYisg~g~~~~~~l~~~~~----------~~-~~~~~~~~~f~~i~~~iv~~g~~~v~~~n~~l 149 (394)
T PF03222_consen 81 IVIGISYLFLLYALLVAYISGGGSILSSLLGNQLG----------TD-LSPWLSSLLFTIIFGGIVYFGTKAVDRINRVL 149 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcC----------CC-CcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 99999999999999999999999998766543211 00 11122122221111111122223333333332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcccchhhhhhhhhhhhhhhhcccchhhhhhcCC-CCchhHHHH
Q 013866 178 AISVLLAVIFVAICSVMAIYAVWEGKSKTPKLLPQLDNHVSVFDLFTAVPVIVTAFTFHFNVHPIGFEFD-KPSDMITAV 256 (435)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~-~p~~~~~~~ 256 (435)
....+.....+. .+-. ++.+.+.+....+...++...+.++|+.++||+.|+.+|++.+.++ |++|.+|++
T Consensus 150 v~~~i~~~~~l~------~~~~--p~~~~~~L~~~~~~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~d~~k~~~ai 221 (394)
T PF03222_consen 150 VFGMIISFIILV------VYLI--PHWNPSNLLDAPPSPSDWSYILPALPVLVFSFGFHNIVPSLVKYLGGDPKKIRKAI 221 (394)
T ss_pred HHHHHHHHHHHH------HHHh--hhcCHHHhhccccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHhCccHHHHHHHH
Confidence 222221111111 1111 2333332222122235677889999999999999999999999998 556999999
Q ss_pred HHHHHHHHHHHHHHHhHHhHhcCCCc----------chh---hhcCCCcCCcchhhhHHHHHHHHHHHHHHHHhhhhhhh
Q 013866 257 RISLVICAAIYFSVGLFGYLLFGESI----------MSD---ILINFDQSSGSAISSLLNDLVRLSYALHLMLVFPMLNF 323 (435)
Q Consensus 257 ~~s~~~~~~~y~~~~~~gy~~fg~~~----------~~~---i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 323 (435)
..+..+..++|+.+-...-.....+. .+. ...+...+ .+.....+++..+.+.++|-....
T Consensus 222 ~~Gs~i~lv~yl~w~~~~lg~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s------~~i~~~~~~fa~~Ai~TSFlGv~l 295 (394)
T PF03222_consen 222 IIGSLIPLVMYLLWVFSILGSLPREQFAEAIAQGGNVSALVSALANVSGS------PWISILGSIFAFFAIATSFLGVYL 295 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCChHHHHHHHHhhcCC------cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999997444433221110 011 11222221 467778889999999999999999
Q ss_pred HHHHHHHHhhccCCcccccccchhhhHHHHHHHHHHHHHhhcCC-HHHHHHhhhhhhhhhHHHhhhhHHHHHhcCCCCch
Q 013866 324 SLRANIDELLFSQKPLLAKDTKRFLSITLVLLVFSYTAAITIPD-IWYFFQFLGSTSAVCLAFIFPGVIVLRDVHGISTT 402 (435)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~p~-~~~~~~~~G~~~~~~~~~i~P~~~~~~~~~~~~~~ 402 (435)
..+|.+.+.+..+++ ++.| .........++.+++...|+ |...++++| .....+..++|+++.+|.|++++.+
T Consensus 296 gl~d~l~d~~k~~~~----~~~r-~~~~~ltf~ppl~~a~~~p~~F~~al~~aG-~~~~il~~ilP~~m~~~~r~~~~~~ 369 (394)
T PF03222_consen 296 GLFDFLADLFKLKNN----SSGR-LKTWLLTFLPPLIFALLFPNGFLIALGYAG-IGIAILLGILPALMVWKARKRKPKQ 369 (394)
T ss_pred HHHHHHHHHHcCCcc----ccch-HHHHHHHHHhHHHHHHHCcHHHHHHHHhhc-HHHHHHHHHHHHHHHHHHHcccCCC
Confidence 999999998754221 2222 32345566788899999997 569999999 8899999999999999976543322
Q ss_pred -----hhhHHHHHHHHHHHHHHH
Q 013866 403 -----RDRIIATVMIVLAVVTST 420 (435)
Q Consensus 403 -----~~~~~~~~~~~~g~v~~v 420 (435)
..+.....++++|++..+
T Consensus 370 ~~~~~gg~~~l~~~~~~~i~iii 392 (394)
T PF03222_consen 370 PYRVPGGNFTLLLVIIFGILIII 392 (394)
T ss_pred CeEEeCcHHHHHHHHHHHHHHHH
Confidence 245666777777776654
No 10
>PRK10483 tryptophan permease; Provisional
Probab=99.95 E-value=2e-25 Score=212.25 Aligned_cols=379 Identities=14% Similarity=0.179 Sum_probs=264.5
Q ss_pred CCCCCCchHHHHHHHHHHHHhhhhchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHhhh-cCCCCHHHHHHHHhCh
Q 013866 16 KTEKRPSVSGAVFNVATSIIGAGIMSIPATIKVLGVIPAFVLIVIIACLTDISVDFLMRYTNA-GETSTYAGVMRESFGR 94 (435)
Q Consensus 16 ~~~~~~s~~~~~~~l~~~~iG~GiL~LP~~~~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~-~~~~~y~~l~~~~~G~ 94 (435)
.++++.+..++.+.+.+++||+|+|+||.+-++.|..++++++++++..+.+|..++.|+..+ ++..++.+++|+.+||
T Consensus 6 ~~~~~~~~~g~~~iIaGT~IGaGMLaLP~~~a~~GF~~s~~~l~~~W~~M~~taLlllEv~l~~~~g~~~~tma~~~LG~ 85 (414)
T PRK10483 6 TTQTSPSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWSMAALIFTWFCMLHSGLMILEANLNYRIGSSFDTITKDLLGK 85 (414)
T ss_pred cccCCCcHHHHHHHHHHchHhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCh
Confidence 457788999999999999999999999999999999999999999999999999999998655 5678899999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCccccchhhhhhcCccccchHHHHHHHHHHHHhccccccccchhh
Q 013866 95 AGSVAVQLCVMITNLGCLIIFLIIIGDVLCGKQPEGSVHLGVLQEWFGFHWWNTRVFALLFVMVFVMLPLALFRRVGSLR 174 (435)
Q Consensus 95 ~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~l~ 174 (435)
+++++..+.+.+..++.+.+|..-.|+.+++.+++. +. + .+.+.-.+++......+...-.|..++..
T Consensus 86 ~g~~i~~~s~lfl~Y~Ll~AYisg~g~il~~~l~~~-~~--------~---i~~~~~~llF~~~~~~iv~~gt~~vd~~n 153 (414)
T PRK10483 86 GWNVVNGISIAFVLYILTYAYISASGSILHHTFAEM-SL--------N---VPARAAGFGFALLVAFVVWLSTKAVSRMT 153 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHhc-CC--------C---CcHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 999999999999999999999999999997766431 00 0 11111111211111122222235555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCC-CCcccchhhhhhhhhhhhhhhhcccchhhhhhcCCC-Cchh
Q 013866 175 FSSAISVLLAVIFVAICSVMAIYAVWEGKSKTPKLLPQ-LDNHVSVFDLFTAVPVIVTAFTFHFNVHPIGFEFDK-PSDM 252 (435)
Q Consensus 175 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~-p~~~ 252 (435)
..-..+.+.+....+ ..+. ++.+.+.+... .+....+..++.+++++++||+.|+++|++.+++++ ++|.
T Consensus 154 ~~l~~~~i~~f~~~~-------~~l~-~~i~~~~L~~~~~~~~~~~~~~~~alPvl~~SFgfh~iIPsl~~y~~~d~~ki 225 (414)
T PRK10483 154 AIVLGAKVITFFLTF-------GSLL-GHVQPATLFNVAESNASYAPYLLMTLPFCLASFGYHGNVPSLMKYYGKDPKTI 225 (414)
T ss_pred HHHHHHHHHHHHHHH-------HHHH-hhcCHHHHhccccccchhHHHHHHHHHHHHhhccCCCcchHHHHHhCcCHHHH
Confidence 444444432222111 1111 23332222211 111123456889999999999999999999999885 5699
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHhHhcCCCcc----------hhhhcCCCcCCcchhhhHHHHHHHHHHHHHHHHhhhhhh
Q 013866 253 ITAVRISLVICAAIYFSVGLFGYLLFGESIM----------SDILINFDQSSGSAISSLLNDLVRLSYALHLMLVFPMLN 322 (435)
Q Consensus 253 ~~~~~~s~~~~~~~y~~~~~~gy~~fg~~~~----------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 322 (435)
+|++..+..+..++|+.+-.......+.+.- +..++.+.+..+ ..+.....+++..+.+.++|-...
T Consensus 226 r~~I~iGs~Iplv~yl~W~~~~lg~l~~~~~~~~~~~~~ni~~L~~~l~~~~~---~~~i~~~~~~Fa~~Ai~TSFlGv~ 302 (414)
T PRK10483 226 VKCLVYGTLMALALYTIWLLATMGNIPRPEFIGIAEKGGNIDVLVQALSGVLN---SRSLDLLLVVFSNFAVASSFLGVT 302 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCChHHHHHHHHHhcC---ChHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999975554444331110 111122221111 135667788888999999999999
Q ss_pred hHHHHHHHHhhccCCcccccccchhhhHHHHHHHHHHHHHhhcCC-HHHHHHhhhhhhhhhHHHhhhhHHHHHhcCC-CC
Q 013866 323 FSLRANIDELLFSQKPLLAKDTKRFLSITLVLLVFSYTAAITIPD-IWYFFQFLGSTSAVCLAFIFPGVIVLRDVHG-IS 400 (435)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~p~-~~~~~~~~G~~~~~~~~~i~P~~~~~~~~~~-~~ 400 (435)
...+|.+.+.+..+++ ++.| .....+.++++.+++...|+ |-..++++|.. ...+..++|+++.++.||+ ++
T Consensus 303 LGL~d~l~D~~k~~~~----~~~r-~~~~~ltflPPl~~al~~P~~Fl~AL~yAG~~-~~il~~ilP~lM~~~~Rk~~~~ 376 (414)
T PRK10483 303 LGLFDYLADLFGFDDS----AMGR-FKTALLTFLPPVVGGLLFPNGFLYAIGYAGLA-ATIWAAIVPALLARASRKRFGS 376 (414)
T ss_pred HHHHHHHHHHhCCCCc----cccc-eeeehhhHhhHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCC
Confidence 9999999998754432 1122 22234567799999999998 66999999977 7788889999999997764 22
Q ss_pred c----hhhhHHHHHHHHHHHHHHHHHh
Q 013866 401 T----TRDRIIATVMIVLAVVTSTIAI 423 (435)
Q Consensus 401 ~----~~~~~~~~~~~~~g~v~~v~g~ 423 (435)
+ ...+.....++++|+...++-.
T Consensus 377 ~~y~v~Gg~~~l~~~~~~g~~~i~~~i 403 (414)
T PRK10483 377 PKFRVWGGKPMIVLILLFGVGNALVHI 403 (414)
T ss_pred CCceecCCHHHHHHHHHHHHHHHHHHH
Confidence 2 2344555667777776665544
No 11
>PRK09664 tryptophan permease TnaB; Provisional
Probab=99.95 E-value=1.4e-25 Score=213.08 Aligned_cols=380 Identities=14% Similarity=0.135 Sum_probs=261.6
Q ss_pred CCCCCCCchHHHHHHHHHHHHhhhhchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHhhh-cCCCCHHHHHHHHhC
Q 013866 15 SKTEKRPSVSGAVFNVATSIIGAGIMSIPATIKVLGVIPAFVLIVIIACLTDISVDFLMRYTNA-GETSTYAGVMRESFG 93 (435)
Q Consensus 15 ~~~~~~~s~~~~~~~l~~~~iG~GiL~LP~~~~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~-~~~~~y~~l~~~~~G 93 (435)
|+.+||.+..++.+.+.+++||+|+|+||.+-++.|..++++++++++..+.+|..++.|+..+ ++..++.+++|+.+|
T Consensus 3 ~~~~~~~~~~gg~~iIaGT~IGAGMLaLP~~~a~~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~~~g~~l~tma~~~LG 82 (415)
T PRK09664 3 DQAEKKHSAFWGVMVIAGTVIGGGMFALPVDLAGAWFFWGAFILIIAWFSMLHSGLLLLEANLNYPVGSSFNTITKDLIG 82 (415)
T ss_pred cchhhccchhhhhHHhhhccHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHcC
Confidence 3445555888999999999999999999999999999999999999999999999999998665 467889999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCccccchhhhhhcCccccchHHHHHHHHHHHHhccccccccchh
Q 013866 94 RAGSVAVQLCVMITNLGCLIIFLIIIGDVLCGKQPEGSVHLGVLQEWFGFHWWNTRVFALLFVMVFVMLPLALFRRVGSL 173 (435)
Q Consensus 94 ~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~l 173 (435)
|+++++..+.+.+..++.+.+|..-.|+.+++.+++... .+ .+.+...+++......+...-.|..++.
T Consensus 83 ~~g~~i~~~~~~fl~Y~Ll~AYisggG~il~~~l~~~~~--------~~---i~~~~~~llF~~~~~~~v~~gt~~vd~~ 151 (415)
T PRK09664 83 NTWNIISGITVAFVLYILTYAYISANGAIISETISMNLG--------YH---ANPRIVGICTAIFVASVLWISSLAASRI 151 (415)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhhcc--------CC---CcHHHHHHHHHHHHHHHHHhchhHHHHH
Confidence 999999999999999999999999999999766542100 01 1111111222221112222223444554
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCC-Cc-cc-chhhhhhhhhhhhhhhhcccchhhhhhcCCCC-
Q 013866 174 RFSSAISVLLAVIFVAICSVMAIYAVWEGKSKTPKLLPQL-DN-HV-SVFDLFTAVPVIVTAFTFHFNVHPIGFEFDKP- 249 (435)
Q Consensus 174 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~-~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p- 249 (435)
...-....+++....+ ... -++.+.+.+.+.. .+ .. .+..++.++|++++||+.|+++|++.+.+++.
T Consensus 152 nr~l~~~~ii~f~~~~-------~~l-~~~i~~~~L~~~~~~~~~~~~~~~i~~alPVl~~SFgfh~iIPsl~~y~~~d~ 223 (415)
T PRK09664 152 TSLFLGLKIISFVIVF-------GSF-FFQVDYSILRDATSTTAGTSYFPYIFMALPVCLASFGFHGNIPSLIICYGKRK 223 (415)
T ss_pred HHHHHHHHHHHHHHHH-------HHH-hhcccHHHHhcCccccccchHHHHHHHHHHHHHHhhhCCCcchHHHHHhCccH
Confidence 4444433322211111 111 1233333222211 10 01 13357889999999999999999999998854
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhHHhH-----------hcCCCcchhhhcCCCcCCcchhhhHHHHHHHHHHHHHHHHhh
Q 013866 250 SDMITAVRISLVICAAIYFSVGLFGYL-----------LFGESIMSDILINFDQSSGSAISSLLNDLVRLSYALHLMLVF 318 (435)
Q Consensus 250 ~~~~~~~~~s~~~~~~~y~~~~~~gy~-----------~fg~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (435)
+|.+|++..+..+..++|..+=.+... ..|++..+. .+++... ....+.....+++..+.+.++|
T Consensus 224 ~~~~kaIl~Gs~IpLviY~~W~~~ilG~lp~~~~~~~~~~g~nv~~l-~~s~~~~---~~~~~i~~~~~~Fa~~Ai~TSF 299 (415)
T PRK09664 224 DKLIKSVVFGSLLALVIYLFWLYCTMGNIPRESFKAIISSGGNVDSL-VKSFLGT---KQHGIIEFCLLVFSNLAVASSF 299 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCchHH-HHHHHhh---ccChHHHHHHHHHHHHHHHHHH
Confidence 599999999999999999886222211 112111111 1111111 0124677788889999999999
Q ss_pred hhhhhHHHHHHHHhhccCCcccccccchhhhHHHHHHHHHHHHHhhcCC-HHHHHHhhhhhhhhhHHHhhhhHHHHHhcC
Q 013866 319 PMLNFSLRANIDELLFSQKPLLAKDTKRFLSITLVLLVFSYTAAITIPD-IWYFFQFLGSTSAVCLAFIFPGVIVLRDVH 397 (435)
Q Consensus 319 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~p~-~~~~~~~~G~~~~~~~~~i~P~~~~~~~~~ 397 (435)
-.......|.+.+.+..++++ +.| .....+.++++.+.+...|+ |-+.++++|.. ..++.-++|+++.+|.|+
T Consensus 300 lGv~LGL~D~l~D~~~~~~~~----~~r-~~~~~ltflPPl~~al~~P~gFl~AL~yAG~~-~~il~~ilP~lM~~~~Rk 373 (415)
T PRK09664 300 FGVTLGLFDYLADLFKIDNSH----GGR-FKTVLLTFLPPALLYLIFPNGFIYGIGGAGLC-ATIWAVIIPAVLAIKARK 373 (415)
T ss_pred HHHHHHHHHHHHHHhCCCCcc----ccc-eeeehhhHhhhHHHHHHhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhc
Confidence 999999999999987544321 122 22234567799999999998 77999999997 778888999999999776
Q ss_pred C-CC----chhhhHHHHHHHHHHHHHHHHHh
Q 013866 398 G-IS----TTRDRIIATVMIVLAVVTSTIAI 423 (435)
Q Consensus 398 ~-~~----~~~~~~~~~~~~~~g~v~~v~g~ 423 (435)
+ .. -...|.....++++|++..++-.
T Consensus 374 ~~~~~~y~v~GG~~~l~~~~~~g~~ii~~~~ 404 (415)
T PRK09664 374 KFPNQMFTVWGGNLIPAIVILFGITVILCWF 404 (415)
T ss_pred ccCCCCceeeCCHHHHHHHHHHHHHHHHHHH
Confidence 5 21 23466777778888887776543
No 12
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=99.95 E-value=4.8e-25 Score=210.78 Aligned_cols=371 Identities=17% Similarity=0.203 Sum_probs=258.8
Q ss_pred chHHHHHHHHHHHHhhhhchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHhhh-cCCCCHHHHHHHHhChhHHHHH
Q 013866 22 SVSGAVFNVATSIIGAGIMSIPATIKVLGVIPAFVLIVIIACLTDISVDFLMRYTNA-GETSTYAGVMRESFGRAGSVAV 100 (435)
Q Consensus 22 s~~~~~~~l~~~~iG~GiL~LP~~~~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~-~~~~~y~~l~~~~~G~~~~~~~ 100 (435)
+..++.+.+.++.+|+|+|+||.+....|.+++++++++++.++.++.+++.|+..+ ++..++.+++|+.+||+++++.
T Consensus 4 ~~~g~~~li~GTaIGAGmLaLPi~~~~~Gf~~~~~~li~~w~~m~~t~l~l~Ev~~~~~~~~~~~~~a~~~LG~~g~~i~ 83 (403)
T PRK15132 4 RTLGSIFIVAGTTIGAGMLAMPLAAAGVGFSVTLILLIGLWALMCYTALLLLEVYQHVPADTGLGTLAKRYLGRYGQWLT 83 (403)
T ss_pred cHHHHHHHHHhcchhHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhChHHHHHH
Confidence 778999999999999999999999999999999999999999999999999997654 4467899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccCCCCCCCccccchhhhhhcCccccchHHHHHHHHHHHHhccccccccchhhHHHHHH
Q 013866 101 QLCVMITNLGCLIIFLIIIGDVLCGKQPEGSVHLGVLQEWFGFHWWNTRVFALLFVMVFVMLPLALFRRVGSLRFSSAIS 180 (435)
Q Consensus 101 ~~~~~~~~~g~~~~y~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~l~~~s~~~ 180 (435)
.+.+.+..+..+.+|..-.|+.+++.+++ +.+.+ .+.....+.+.......-..-.|...+....-...
T Consensus 84 ~~~y~fl~y~ll~AYisg~g~il~~~l~~----------~~~~~-i~~~~~~l~F~~~~~~iv~~g~~~v~~~n~~L~~~ 152 (403)
T PRK15132 84 GFSMMFLMYALTAAYISGAGELLASSISD----------WTGIS-MSPTAGVLLFTLVAGGVVCVGTSSVDLFNRFLFSA 152 (403)
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHHHHHHH----------hccCC-CChHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 99999999999999999988877654432 11111 11122222222221121111223333333333332
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcccchhhhhhhhhhhhhhhhcccchhhhhhcCCCC-chhHHHHHHH
Q 013866 181 VLLAVIFVAICSVMAIYAVWEGKSKTPKLLPQLDNHVSVFDLFTAVPVIVTAFTFHFNVHPIGFEFDKP-SDMITAVRIS 259 (435)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p-~~~~~~~~~s 259 (435)
.+.... ... ..+. ++++.+....... +...++.++|++.+||+.|+++|++.+.+++. +|.+|++..+
T Consensus 153 ~ii~~~---~~~----~~l~-p~~~~~~L~~~~~---~~~~~~~~iPvl~~SFgfh~iIpsl~~y~~~~~~~~~k~i~~G 221 (403)
T PRK15132 153 KIIFLV---VML----ALMM-PHIHKVNLLTLPL---QQGLALSAIPVIFTSFGFHGSVPSIVSYMGGNIRKLRWVFIIG 221 (403)
T ss_pred HHHHHH---HHH----HHHH-HhcCHHHHhcCCc---cccHHHHHHHHHHHHhhCCcccHHHHHHhCcCHHHHHHHHHHH
Confidence 221111 111 1111 3333333222100 11248899999999999999999999998855 5999999999
Q ss_pred HHHHHHHHHHHHhHHhHhcCCCcc----------hhhhcCCCcCCcchhhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Q 013866 260 LVICAAIYFSVGLFGYLLFGESIM----------SDILINFDQSSGSAISSLLNDLVRLSYALHLMLVFPMLNFSLRANI 329 (435)
Q Consensus 260 ~~~~~~~y~~~~~~gy~~fg~~~~----------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 329 (435)
..+..++|+.+-.......+.+.- ++.++.+.+.. ..++...+.+++..+.+.++|-......+|.+
T Consensus 222 s~i~li~yl~W~~~~lg~l~~~~~~~~~~~~~~~~~~l~~l~~~~---~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l 298 (403)
T PRK15132 222 SAIPLVAYIFWQLATLGSIDSTTFMGLLANHAGLNGLLQALREVV---ASPHVELAVHLFADLALATSFLGVALGLFDYL 298 (403)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHccCchHHHHHHHHHHc---cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999986666655543211 11222222211 11467778888999999999999999999999
Q ss_pred HHhhccCCcccccccchhhhHHHHHHHHHHHHHhhcCC-HHHHHHhhhhhhhhhHHHhhhhHHHHHhcCCC-C-chh---
Q 013866 330 DELLFSQKPLLAKDTKRFLSITLVLLVFSYTAAITIPD-IWYFFQFLGSTSAVCLAFIFPGVIVLRDVHGI-S-TTR--- 403 (435)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~p~-~~~~~~~~G~~~~~~~~~i~P~~~~~~~~~~~-~-~~~--- 403 (435)
.+.+.++++ ++.| .....+..+++++++...|+ |....++.|.. ...+.+++|+++.+|.++++ . +.+
T Consensus 299 ~d~~~~~~~----~~~r-~~~~~l~flppli~a~~~P~~F~~al~~aG~~-~ail~~ilP~~m~~~~r~~~~~~~y~v~g 372 (403)
T PRK15132 299 ADLFQRRNT----VGGR-LQTGLITFLPPLAFALFYPRGFVMALGYAGVA-LAVLALLLPSLLVWQSRKQNPQAGYRVKG 372 (403)
T ss_pred HHHHccCcc----ccCC-chhehhhHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhcCCCCCccCCC
Confidence 998754322 1122 33345677899999999997 55888888865 89999999999999977543 1 222
Q ss_pred hhHHHHHHHHHHHHHHHHHh
Q 013866 404 DRIIATVMIVLAVVTSTIAI 423 (435)
Q Consensus 404 ~~~~~~~~~~~g~v~~v~g~ 423 (435)
.+...++++++|++..+.-.
T Consensus 373 g~~~~~~v~~~G~~~i~~~~ 392 (403)
T PRK15132 373 GRPALALVFLCGIAVIGIQF 392 (403)
T ss_pred ChHHHHHHHHHHHHHHHHHH
Confidence 66778888888887776533
No 13
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=99.94 E-value=3.5e-24 Score=207.92 Aligned_cols=348 Identities=18% Similarity=0.241 Sum_probs=241.7
Q ss_pred HHHHHHHHHHhhhhchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHhhh-cCCCCHHHHHHHHhChhHHHHHHHHH
Q 013866 26 AVFNVATSIIGAGIMSIPATIKVLGVIPAFVLIVIIACLTDISVDFLMRYTNA-GETSTYAGVMRESFGRAGSVAVQLCV 104 (435)
Q Consensus 26 ~~~~l~~~~iG~GiL~LP~~~~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~-~~~~~y~~l~~~~~G~~~~~~~~~~~ 104 (435)
++..++++++|+|++++|..+++.|...+++.+++.++++.++..++.|...+ ++..++.+++++.+||++++++.+.+
T Consensus 2 ~~~lv~gt~IGaGIl~lP~~~a~~g~~~~~~~~i~~~~~~~~~~l~~~el~~~~p~~~~~~~~~~~~~G~~~g~~~~~~~ 81 (381)
T TIGR00837 2 GALIIAGTTIGAGMLALPTSTAGAWFIWTLLLLILLWFLMLHSGLLLLEVYLTYPGGASFNTIAKDLLGKTGNIIAGLSL 81 (381)
T ss_pred ceEEeehhhHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCHHHHHHHHHHH
Confidence 34567899999999999999999999999999999999999999999998655 45789999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcccCCCCCCCccccchhhhhhcCccccchHHHHHHHHHHHHhccccccccchhhHHHHHHHHHH
Q 013866 105 MITNLGCLIIFLIIIGDVLCGKQPEGSVHLGVLQEWFGFHWWNTRVFALLFVMVFVMLPLALFRRVGSLRFSSAISVLLA 184 (435)
Q Consensus 105 ~~~~~g~~~~y~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~l~~~s~~~~~~~ 184 (435)
.+.++..+.+|....++.+++++++. .+.. .+ +....+ ... +++.....+..+...+++.+.....
T Consensus 82 ~~~~~~~~~ay~~~~~~~l~~~~~~~----------~~~~-~~-~~~~~~-~~~-~v~~~l~~~G~~~~~~v~~i~~~~~ 147 (381)
T TIGR00837 82 LFVLYILTYAYISGGGSILSRLIGEY----------FGFP-WS-ARAIVL-IFT-VLFGSFVWLSTSAVDRITRVLIFGK 147 (381)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHh----------cCCC-cc-HHHHHH-HHH-HHHHHHHHhchhHHHHHHHHHHHHH
Confidence 99999999999999888886554321 1111 11 221221 122 2222333445566666666555433
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcccchhhhhhhhhhhhhhhhcccchhhhhhcCC-CCchhHHHHHHHHHHH
Q 013866 185 VIFVAICSVMAIYAVWEGKSKTPKLLPQLDNHVSVFDLFTAVPVIVTAFTFHFNVHPIGFEFD-KPSDMITAVRISLVIC 263 (435)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~-~p~~~~~~~~~s~~~~ 263 (435)
+..+++.++... . +.+.++..|...+...+.++..+++...++|++|.+++++.+|++ |++|.+|++..+..++
T Consensus 148 l~~l~~~ii~~~---~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~fg~~~~i~~~~~~~~~~~k~i~raii~g~~i~ 222 (381)
T TIGR00837 148 IIAFALVFSGLL---P--HVKGDLLLDVALDTSYWPYILSALPVCLTSFGFHGNVPSLYKYYDGNVKKVKKSILIGSAIA 222 (381)
T ss_pred HHHHHHHHHHHH---h--hccHHHHhcCccccccHHHHHHHHHHHHHHHHcccccHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 332222221111 1 111112222111112456788899999999999889999999997 5459999999999999
Q ss_pred HHHHHHHHhHHhHhcCCCcchhhhcCCCcCCc------chh-hhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhccC
Q 013866 264 AAIYFSVGLFGYLLFGESIMSDILINFDQSSG------SAI-SSLLNDLVRLSYALHLMLVFPMLNFSLRANIDELLFSQ 336 (435)
Q Consensus 264 ~~~y~~~~~~gy~~fg~~~~~~i~~~~~~~~~------~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 336 (435)
+++|+.+........+.+.-.+.....++.+. ... ..+...+...+..+.+..++.......+|.+.+.+.++
T Consensus 223 ~~lY~l~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~l~~~~~~~ 302 (381)
T TIGR00837 223 LVLYILWQLATMGNLPRSEFLPIIAKGGNLDGLVNALQGVLKSSAIELALELFSNFALASSFLGVTLGLFDYLADLFKFD 302 (381)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHcCCChHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999987766665543322211111111000 000 12456778888888999999999999999988776543
Q ss_pred CcccccccchhhhHHHHHHHHHHHHHhhcCCHH-HHHHhhhhhhhhhHHHhhhhHHHHHhcCC
Q 013866 337 KPLLAKDTKRFLSITLVLLVFSYTAAITIPDIW-YFFQFLGSTSAVCLAFIFPGVIVLRDVHG 398 (435)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~p~~~-~~~~~~G~~~~~~~~~i~P~~~~~~~~~~ 398 (435)
++ +++|+ ....+..+++.+++.+.|+.. ..++.+| ++..++.+++|++++++.|++
T Consensus 303 ~~----~~~~~-~~~~~~~~~pl~~a~~~p~~~~~~l~~~G-~~~~~~~~~~p~l~~~~~r~~ 359 (381)
T TIGR00837 303 DS----KKGRF-KTGLLTFLPPLVFALFYPEGFLYAIGYAG-LAATIWAVIIPALLAWKARKK 359 (381)
T ss_pred cc----cCCCc-hhhhhhHHhHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence 32 12232 334556678888999999866 9999999 779999999999999986654
No 14
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=99.93 E-value=3.6e-23 Score=196.58 Aligned_cols=381 Identities=12% Similarity=0.157 Sum_probs=252.3
Q ss_pred HHHHHHHHHHHhhhhchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHhhh--cCCCCHHHHHHHHhChhHHHHHHH
Q 013866 25 GAVFNVATSIIGAGIMSIPATIKVLGVIPAFVLIVIIACLTDISVDFLMRYTNA--GETSTYAGVMRESFGRAGSVAVQL 102 (435)
Q Consensus 25 ~~~~~l~~~~iG~GiL~LP~~~~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~--~~~~~y~~l~~~~~G~~~~~~~~~ 102 (435)
.....+.++.+|+|+|+||-.....|.+++++++++++.++.++++.+.|...+ ++..++.+++++.+||+++.+..+
T Consensus 23 ~W~l~l~GTAIGAGmLfLPI~~g~~Gf~p~lillll~~p~m~~s~l~L~e~~L~~~~~~~~i~~v~~~~lG~~g~~i~~i 102 (443)
T PRK13629 23 TWTLGLFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYPIAFYCHRALARLCLSGSNPSGNITETVEEHFGKTGGVVITF 102 (443)
T ss_pred hHHHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCHHHHHHHHcChhHHHHHHH
Confidence 345889999999999999999999999999999999999999999999996543 457899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhcccCCCCCCCccccchhhhhhcCccccchHHHHHHHH-HHHHhccccccccchhhHHHHHHH
Q 013866 103 CVMITNLGCLIIFLIIIGDVLCGKQPEGSVHLGVLQEWFGFHWWNTRVFALLFVM-VFVMLPLALFRRVGSLRFSSAISV 181 (435)
Q Consensus 103 ~~~~~~~g~~~~y~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~pl~~~~~~~~l~~~s~~~~ 181 (435)
.+++..+..+.+|...+.+.+++.+.++.+ ....+ |....++++ .+..+...-.|-+.+....-....
T Consensus 103 lYff~ly~ll~aY~~~itn~l~sfl~~ql~----------~~~~~-r~l~slifv~~l~~iv~~G~~~v~kv~~~Lv~~~ 171 (443)
T PRK13629 103 LYFFAICPLLWIYGVTITNTFMTFWENQLG----------FAPLN-RGFVALFLLLLMAFVIWFGKDLMVKVMSYLVWPF 171 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcC----------cCCcc-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 999999999999998888777543322211 10011 222221111 111111112233333332222222
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCCC-------CCCCcccchhhhhhhhhhhhhhhhcccchhhhhhc----CC---
Q 013866 182 LLAVIFVAICSVMAIYAVWEGKSKTPKLL-------PQLDNHVSVFDLFTAVPVIVTAFTFHFNVHPIGFE----FD--- 247 (435)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~----m~--- 247 (435)
+...+.+. + .+. ++++.+... +...+......++.++|++++||+.|+.+|+...+ .+
T Consensus 172 i~~l~~l~------~-~Li-P~w~~~~L~~~~~~~~~~~~~~~~~~~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~ 243 (443)
T PRK13629 172 IASLVLIS------L-SLI-PYWNSAVIDQVDLGSLSLTGHDGILVTVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDF 243 (443)
T ss_pred HHHHHHHH------H-HHH-HHcCHHHHhcCccccccccccccHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhcccc
Confidence 21111111 1 111 223222111 11101011235888999999999999999999877 53
Q ss_pred --C--CchhHHHHHHHHHHHHHHHHHHHhHHhHhcCCCcc-------hhhhcCCCcCCcc-hhh-----hHHHHHHHHHH
Q 013866 248 --K--PSDMITAVRISLVICAAIYFSVGLFGYLLFGESIM-------SDILINFDQSSGS-AIS-----SLLNDLVRLSY 310 (435)
Q Consensus 248 --~--p~~~~~~~~~s~~~~~~~y~~~~~~gy~~fg~~~~-------~~i~~~~~~~~~~-~~~-----~~~~~~~~~~~ 310 (435)
| ++|.+|+...+..+..++|+.+.+.+....+++.- .+++..+.+..+. ... .++.....++.
T Consensus 244 ~~~~a~~k~~rii~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~qn~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa 323 (443)
T PRK13629 244 GRDFTERKCSQIISRASMLMVAVVMFFAFSCLFTLSPQNMAEAKAQNIPVLSYLANHFASMTGTKSTFAITLEYAASIIA 323 (443)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCcHHHHHHHHhhhcccccccchhHHHHHHHHHH
Confidence 3 34899999999999999999998877777664321 1111111111110 000 24667777788
Q ss_pred HHHHHHhhhhhhhHHHHHHHHhhcc---CCc-ccccccchhhhHHHHHHHHHHHHHhhcCCHHHHHHhhhhhhhhhHHHh
Q 013866 311 ALHLMLVFPMLNFSLRANIDELLFS---QKP-LLAKDTKRFLSITLVLLVFSYTAAITIPDIWYFFQFLGSTSAVCLAFI 386 (435)
Q Consensus 311 ~~~~~~~~p~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~p~~~~~~~~~G~~~~~~~~~i 386 (435)
.+.+.++|-......+|.++....+ +.+ ++.+++.......+++++.++.++..-|+.-++++..|+.....+.|+
T Consensus 324 ~~AI~TSFlGv~LGl~E~l~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~np~il~~i~~~~gPiia~il~l 403 (443)
T PRK13629 324 LVAIFKSFFGHYLGTLEGLNGLILKFGYKGDKTKVSLGKLNTISMIFIMGSTWVVAYANPNILDLIEAMGAPIIASLLCL 403 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhhHHHHHHHHH
Confidence 8899999999999999999887742 111 111111122344567778899999999999999998888889999999
Q ss_pred hhhHHHHHhcCCCCchhhhHHHHHHHHHHHHHHHHHhHH
Q 013866 387 FPGVIVLRDVHGISTTRDRIIATVMIVLAVVTSTIAIST 425 (435)
Q Consensus 387 ~P~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~v~g~~~ 425 (435)
+|...-.|...-+ +.+.+..++++.+.|++......|.
T Consensus 404 ~P~y~i~kvp~l~-~yr~~~~n~fv~~~Gl~~i~~~~~~ 441 (443)
T PRK13629 404 LPMYAIRKAPSLA-KYRGRLDNVFVTVIGLLTILNIVYK 441 (443)
T ss_pred HHHHHHHccHHHH-HhCCCchhHHHHHHHHHHHHHHHHh
Confidence 9999988743211 1223345788888888877665553
No 15
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=99.89 E-value=4.6e-21 Score=184.00 Aligned_cols=370 Identities=16% Similarity=0.181 Sum_probs=246.5
Q ss_pred HHHHHHHHHHHHhhhhchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHhh--hcCCCCHHHHHHHHhChhHHHHHH
Q 013866 24 SGAVFNVATSIIGAGIMSIPATIKVLGVIPAFVLIVIIACLTDISVDFLMRYTN--AGETSTYAGVMRESFGRAGSVAVQ 101 (435)
Q Consensus 24 ~~~~~~l~~~~iG~GiL~LP~~~~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~--~~~~~~y~~l~~~~~G~~~~~~~~ 101 (435)
.+..+.+.++++|+|+|++|...++.||...++..++...++.++.+++.|... +.+..++.|++|+.+||+++.+..
T Consensus 6 ~~w~~~l~gt~IGaGiL~LP~~ag~~G~i~~li~~l~~~pl~~~~~~ll~~~~l~~~~p~~~i~~~~~~~fGk~~G~ii~ 85 (397)
T TIGR00814 6 TGWMLGLYGTAIGAGVLFLPIQAGLGGLWVLVLMAIIAYPLTYFGHRALARFLLSSKNPCEDITEVVEEHFGKNWGILIT 85 (397)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHcCHHHHHHHH
Confidence 456788999999999999999999999999999999999999999999999632 334789999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCCCCCCCccccchhhhhhcCccccchHHHHHHHHHHHHhccccccccchhhHHHHHHH
Q 013866 102 LCVMITNLGCLIIFLIIIGDVLCGKQPEGSVHLGVLQEWFGFHWWNTRVFALLFVMVFVMLPLALFRRVGSLRFSSAISV 181 (435)
Q Consensus 102 ~~~~~~~~g~~~~y~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~l~~~s~~~~ 181 (435)
+.+++..+..+.+|....++.+++.+.+. .+.+ -+.+. +.....+..+-.......+.+.+.+.+-.
T Consensus 86 ~lY~~~~~~i~~aY~~~~~~~~~~fl~~~----------~~~~-~p~~~--i~~lilv~il~~iv~~G~~~i~r~~~il~ 152 (397)
T TIGR00814 86 LLYFFAIYPILLIYSVAITNDSASFLVNQ----------LGTA-PPLRG--LLSLALILILVAIMSFGEKLLFKIMGPLV 152 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------cCCC-CcHHH--HHHHHHHHHHHHHHHhcHHHHHHHHHHHH
Confidence 99999999999999988887775443211 1111 01121 11111222222233334444444444443
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcccchhhhhhhhhhhhhhhhcccchhhhh----hcCCCC----chhH
Q 013866 182 LLAVIFVAICSVMAIYAVWEGKSKTPKLLPQLDNHVSVFDLFTAVPVIVTAFTFHFNVHPIG----FEFDKP----SDMI 253 (435)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~----~~m~~p----~~~~ 253 (435)
...+..+.... ++-. ++.+.+...........+.++..+++..++||.+|+.+|+.. +|.+|| +|.+
T Consensus 153 ~~~ii~l~~l~---~~li--p~~~~~~L~~~p~~~~~~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~ 227 (397)
T TIGR00814 153 FPLVLILVLLS---LYLI--PHWNGANLTTFPSFNGFLKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKCL 227 (397)
T ss_pred HHHHHHHHHHH---HHHH--HHcCHHHHhcCCcccchHHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHHH
Confidence 22222222111 1111 223222221111111245679999999999999999999997 445533 3889
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhHhcCCCcchh-------hhcCCCcCCcchhhhHHHHHHHHHHHHHHHHhhhhhhhHHH
Q 013866 254 TAVRISLVICAAIYFSVGLFGYLLFGESIMSD-------ILINFDQSSGSAISSLLNDLVRLSYALHLMLVFPMLNFSLR 326 (435)
Q Consensus 254 ~~~~~s~~~~~~~y~~~~~~gy~~fg~~~~~~-------i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 326 (435)
|+...+..+.+++|+.+-..+....+++.-.. .++.+.+..+ .++......++..+.+..+|-.+....+
T Consensus 228 k~i~~~~~i~~~~y~~~~~s~~~~l~~~~~~~a~~~nis~Ls~l~~~~~---~~~i~~~~~~f~~~Ai~tSFlG~~lg~~ 304 (397)
T TIGR00814 228 RIMKGASLILVATVMFFVFSCVLSLSPAEAVAAKEQNISILSYLANHFN---AAWISYAGPIVAIVAISKSFFGHYLGAR 304 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHhhcC---CcHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 99999999999999999888887776533211 1111111111 1356677778888899999999999999
Q ss_pred HHHHHhhccCCcccc---cccchhhhHHHHHHHHHHHHHhhcCCHHHHHHhhhhhhhhhHHHhhhhHHHHHhcCCCCchh
Q 013866 327 ANIDELLFSQKPLLA---KDTKRFLSITLVLLVFSYTAAITIPDIWYFFQFLGSTSAVCLAFIFPGVIVLRDVHGISTTR 403 (435)
Q Consensus 327 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~a~~~p~~~~~~~~~G~~~~~~~~~i~P~~~~~~~~~~~~~~~ 403 (435)
|.+.+.+.+...+.. .+++.......++++.++.++..-|+.-++++-.|+.....+.|+.|...-.|...-+ +.+
T Consensus 305 e~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~il~~i~~~~gp~~a~i~~~~p~~~~~~v~~l~-~~~ 383 (397)
T TIGR00814 305 EGLNGIVLNSLKMKGKKINIRKLNRAIAIFIVLTTWIVAYINPSILSFIEALGGPIIAMILFLMPMYAIYKVPALK-KYR 383 (397)
T ss_pred HHHHHHHHHHhcccccccCHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhHHHHHHHHHHHHHHHHHccHHHH-HhC
Confidence 999987732211111 1111123445666778999999999999999988888899999999999988743211 111
Q ss_pred hhHHHHHHHHHH
Q 013866 404 DRIIATVMIVLA 415 (435)
Q Consensus 404 ~~~~~~~~~~~g 415 (435)
.+..++++.+.|
T Consensus 384 ~~~~~~fv~~~g 395 (397)
T TIGR00814 384 GRISNVFVTVIG 395 (397)
T ss_pred CCcchheeEeee
Confidence 223455555544
No 16
>PRK10655 potE putrescine transporter; Provisional
Probab=99.77 E-value=2.6e-15 Score=148.56 Aligned_cols=240 Identities=13% Similarity=0.086 Sum_probs=151.9
Q ss_pred CCCCCchHHHHHHHHHHHHhhhhchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHhh-hcCCCCHHHHHHHHhChh
Q 013866 17 TEKRPSVSGAVFNVATSIIGAGIMSIPATIKVLGVIPAFVLIVIIACLTDISVDFLMRYTN-AGETSTYAGVMRESFGRA 95 (435)
Q Consensus 17 ~~~~~s~~~~~~~l~~~~iG~GiL~LP~~~~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~-~~~~~~y~~l~~~~~G~~ 95 (435)
++|+.+.++.+...+++++|+|++.+|..+++.|. .+++.+++.+++.......+.|... .++.....+.+++.+||+
T Consensus 4 ~~~~l~~~~~~~l~vg~~iGsGif~~p~~~~~~G~-~~~~~w~i~~~~~~~~a~~~aeL~~~~P~~GG~y~y~~~~~G~~ 82 (438)
T PRK10655 4 KSNKMGVVQLTILTAVNMMGSGIIMLPTKLAQVGT-ISILSWLVTAVGSMALAYAFAKCGMFSRKSGGMGGYAEYAFGKS 82 (438)
T ss_pred ccCcccHHHHHHHHHHhhhhhHHHHhHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCchHHHHHHHcCcc
Confidence 47789999999999999999999999999888885 6788999999999999999988653 445566667789999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCccccchhhhhhcCccccchHHHHHHHHHHHHhccccccccchhhH
Q 013866 96 GSVAVQLCVMITNLGCLIIFLIIIGDVLCGKQPEGSVHLGVLQEWFGFHWWNTRVFALLFVMVFVMLPLALFRRVGSLRF 175 (435)
Q Consensus 96 ~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~l~~ 175 (435)
.++++.+.+++........+.....+++..+++.. .+....++.....+.+.-....+..+....
T Consensus 83 ~gf~~gw~~~~~~~~~~~~~a~~~~~y~~~~~~~~---------------~~~~~~~~~~~~~l~~~~~ln~~g~~~~~~ 147 (438)
T PRK10655 83 GNFMANYTYGVSLLIANVAIAISAVGYGTELFGAT---------------LSPVQICLATIGVLWLCTVANFGGARITGQ 147 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---------------cchHHHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 99999998877666555554444444443333210 000111111111111111122223333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcccchhhhhhhhhhhhhhhhcccchhhhhhcCCCCc-hhHH
Q 013866 176 SSAISVLLAVIFVAICSVMAIYAVWEGKSKTPKLLPQLDNHVSVFDLFTAVPVIVTAFTFHFNVHPIGFEFDKPS-DMIT 254 (435)
Q Consensus 176 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~-~~~~ 254 (435)
++.+.....+..+++..+..... .+++...+...| ++...+.++..++....|+|.|.+......+|.|||+ +.+|
T Consensus 148 i~~i~~~~~l~~l~~~~i~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~iPr 224 (438)
T PRK10655 148 ISSVTVWGVIIPVVGLSIIGWFW-FSPSLYVAAWNP--HHLPFFSAVGSSIAMTLWAFLGLESACANSDAVENPERNVPI 224 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hCcccccCCcCc--cCCchHHHHHHHHHHHHHHHhhhhhhhhhHHHhhCccccccH
Confidence 33332221111111111111111 122111111111 1112235677778889999999999999999999998 8999
Q ss_pred HHHHHHHHHHHHHHHHHhHHh
Q 013866 255 AVRISLVICAAIYFSVGLFGY 275 (435)
Q Consensus 255 ~~~~s~~~~~~~y~~~~~~gy 275 (435)
++..+..++.++|++......
T Consensus 225 Ai~~~~~~~~~~Y~l~~~~~~ 245 (438)
T PRK10655 225 AVLGGTLGAAVIYIVSTNVIA 245 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998765544
No 17
>PRK10249 phenylalanine transporter; Provisional
Probab=99.74 E-value=1.7e-14 Score=143.18 Aligned_cols=370 Identities=13% Similarity=0.084 Sum_probs=208.3
Q ss_pred CCCccCCCCCCCCCC--CCCCCCchHHHHHHHHHHHHhhhhchHHHH-HHhhChHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013866 1 MSPAAGLQAPLLPSS--KTEKRPSVSGAVFNVATSIIGAGIMSIPAT-IKVLGVIPAFVLIVIIACLTDISVDFLMRYTN 77 (435)
Q Consensus 1 ~~~~~~~~~~~~~~~--~~~~~~s~~~~~~~l~~~~iG~GiL~LP~~-~~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~ 77 (435)
|+++.++.+...+++ +-+|+.+.++..+..++.++|+|++..|.. .+++|. ..++..++.+++.......+.|...
T Consensus 1 ~~~~~~~~~~~~~~~~~~l~r~l~~~~~~~i~ig~~IGsGif~~~g~~~~~aGp-~~~l~~li~~~~~~~~~~~~aEl~~ 79 (458)
T PRK10249 1 MKNASTVSEDTASNQEPTLHRGLHNRHIQLIALGGAIGTGLFLGIGPAIQMAGP-AVLLGYGVAGIIAFLIMRQLGEMVV 79 (458)
T ss_pred CCCccccchhhccCCchhhhccCcHhHhhhhhhhcccchhHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455554444444444 347889999999999999999999988866 556675 5888999999999999999999654
Q ss_pred -hcCCCCHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCccccchhhhhhcCccccchHHHHHHH
Q 013866 78 -AGETSTYAGVMRESFGRAGSVAVQLCVMITNLGCLIIFLIIIGDVLCGKQPEGSVHLGVLQEWFGFHWWNTRVFALLFV 156 (435)
Q Consensus 78 -~~~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (435)
.+......+.+++.+|++.++++.+..++.............+..++...++ .+.......++
T Consensus 80 ~~P~~Gg~~~y~~~~~g~~~gf~~gw~~~~~~~~~~~~~~~a~~~~~~~~~~~----------------~~~~~~~~~~~ 143 (458)
T PRK10249 80 EEPVSGSFAHFAYKYWGPFAGFLSGWNYWVMFVLVGMAELTAAGIYMQYWFPD----------------VPTWIWAAAFF 143 (458)
T ss_pred hCCCCCCHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc----------------CcHHHHHHHHH
Confidence 4567788889999999999999999988876655555555555555322221 11111122222
Q ss_pred HHHHHhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC----CCCCCCCC-cccchhhhhhhhhhhhh
Q 013866 157 MVFVMLPLALFRRVGSLRFSSAISVLLAVIFVAICSVMAIYAVWEGKSKT----PKLLPQLD-NHVSVFDLFTAVPVIVT 231 (435)
Q Consensus 157 ~~~~~~pl~~~~~~~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~f 231 (435)
.+...+.+.-.|..++++.......+..+..+ ++..+.....++... ...+++.+ ...++.++..++....|
T Consensus 144 ~l~~~lN~~gv~~~~~i~~~~~~ikv~~i~~~---i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 220 (458)
T PRK10249 144 IIINAVNLVNVRLYGETEFWFALIKVLAIIGM---IGFGLWLLFSGHGGEKASIDNLWRYGGFFATGWNGLILSLAVIMF 220 (458)
T ss_pred HHHHHHHHhcchhhhhHHHHHHHHHHHHHHHH---HHHHHHHHHcCCCCCCCChhhccCCCCCCCCcHHHHHHHHHHHHH
Confidence 22223333334444444333222221111111 111111111111111 11111110 01345678889999999
Q ss_pred hhhcccchhhhhhcCCCCc-hhHHHHHHHHHHHHHHHHHHHhHHhHhcCCCcc----hhhhcCCCcCCcchhhhHHHHHH
Q 013866 232 AFTFHFNVHPIGFEFDKPS-DMITAVRISLVICAAIYFSVGLFGYLLFGESIM----SDILINFDQSSGSAISSLLNDLV 306 (435)
Q Consensus 232 af~~~~~~~~i~~~m~~p~-~~~~~~~~s~~~~~~~y~~~~~~gy~~fg~~~~----~~i~~~~~~~~~~~~~~~~~~~~ 306 (435)
+|.|.+......+|+|||+ +.+|++..+.....++|...........++... ++...-+.... .++...+.
T Consensus 221 af~G~e~~~~~a~E~~~P~k~iPrai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~----~~~~~~~~ 296 (458)
T PRK10249 221 SFGGLELIGITAAEARDPEKSIPKAVNQVVYRILLFYIGSLVVLLALYPWVEVKSNSSPFVMIFHNLD----SNVVASAL 296 (458)
T ss_pred HHcCHHHHHHHHHHhcCHhhHHHHHHHHHHHHHHHHHHHHHHHHheeccccccCccCCcHHHHHHHcC----chhHHHHH
Confidence 9999999999999999999 799999999999999998754444333322110 11111111110 12344455
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHhhccCCccc------ccccchhh-hHHHHHHHHHHHHHhhcCC--HHHHHHhhhh
Q 013866 307 RLSYALHLMLVFPMLNFSLRANIDELLFSQKPLL------AKDTKRFL-SITLVLLVFSYTAAITIPD--IWYFFQFLGS 377 (435)
Q Consensus 307 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~-~~~~~~~~~~~~~a~~~p~--~~~~~~~~G~ 377 (435)
.+...+..+.+..-..+...+.+...-.++.-++ +.+.+.+. .....+..+..++....|+ ++.+++..+.
T Consensus 297 ~~~~~~a~~~~~~~~~~~~sR~l~a~ardg~lP~~~~kv~~~~~P~~All~~~~i~~l~~l~~~~~~~~~f~~l~~~~~~ 376 (458)
T PRK10249 297 NFVILVASLSVYNSGVYSNSRMLFGLSVQGNAPKFLTRVSRRGVPINSLMLSGAITSLVVLINYLLPQKAFGLLMALVVA 376 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHH
Confidence 5555566666666555666666655543222111 01112211 1121111111122222232 3444444322
Q ss_pred hhhhhHHHhhhhHHHHHhc
Q 013866 378 TSAVCLAFIFPGVIVLRDV 396 (435)
Q Consensus 378 ~~~~~~~~i~P~~~~~~~~ 396 (435)
...+.|++|+..+++.+
T Consensus 377 --~~~i~y~~~~~~~l~~r 393 (458)
T PRK10249 377 --TLLLNWIMICLAHLRFR 393 (458)
T ss_pred --HHHHHHHHHHHHHHHHH
Confidence 45688888998888855
No 18
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=99.74 E-value=1.7e-14 Score=142.94 Aligned_cols=246 Identities=13% Similarity=0.095 Sum_probs=148.6
Q ss_pred CCCCCCCCchHHHHHHHHHHHHhhhhchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHhh-hcCCCCHHHHHHHHh
Q 013866 14 SSKTEKRPSVSGAVFNVATSIIGAGIMSIPATIKVLGVIPAFVLIVIIACLTDISVDFLMRYTN-AGETSTYAGVMRESF 92 (435)
Q Consensus 14 ~~~~~~~~s~~~~~~~l~~~~iG~GiL~LP~~~~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~-~~~~~~y~~l~~~~~ 92 (435)
+.+.+|+.+.++.+...+++++|+|++.+|....+.|. ..+..+++.++........+.|... .++.....+.+++.+
T Consensus 3 ~~~~~~~lg~~~~~~l~vg~~iGsGif~~~~~~a~~g~-~~~~~~~i~~~~~l~~al~~aEL~s~~P~aGG~y~~~~~~~ 81 (445)
T PRK10644 3 SDADAHKVGLIPVTLMVAGNIMGSGVFLLPANLASTGG-IAIYGWLVTIIGALGLSMVYAKMSSLDPSPGGSYAYARRCF 81 (445)
T ss_pred CCccCCCcCHHHHHHHHHhhHhhhHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhHHHHHHc
Confidence 34568899999999999999999999999999888774 4567777888888888888888544 445555556689999
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCccccchhhhhhcCccccchHHHHHHHHHHHHhccccccccch
Q 013866 93 GRAGSVAVQLCVMITNLGCLIIFLIIIGDVLCGKQPEGSVHLGVLQEWFGFHWWNTRVFALLFVMVFVMLPLALFRRVGS 172 (435)
Q Consensus 93 G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~ 172 (435)
||+.++++.+..++..............++....++. .+.+ +......+.++..+..+...-.|...+
T Consensus 82 g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~-~~~~~~~~~~~~~~~~ln~~gvk~~~~ 149 (445)
T PRK10644 82 GPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPI-----------LKDP-LVLTITCVVVLWIFVLLNIVGPKMITR 149 (445)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----------cCCc-HHHHHHHHHHHHHHHHHHHhchHHHHH
Confidence 9999999988877655444443333333333222110 0001 000001111111112222222333333
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcccchhhhhhhhhhhhhhhhcccchhhhhhcCCCCc-h
Q 013866 173 LRFSSAISVLLAVIFVAICSVMAIYAVWEGKSKTPKLLPQLDNHVSVFDLFTAVPVIVTAFTFHFNVHPIGFEFDKPS-D 251 (435)
Q Consensus 173 l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~-~ 251 (435)
+ ..+.....+..++...+..... .+++...+ .++ ..+..++.++..++....|+|.|.+......+|+|||+ +
T Consensus 150 i---~~i~~~~~~i~l~~~~~~~~~~-~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~ 223 (445)
T PRK10644 150 V---QAVATVLALIPIVGIAVFGWFW-FRGETYMA-AWN-VSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRN 223 (445)
T ss_pred H---HHHHHHHHHHHHHHHHHHHHHH-hCchhccC-Ccc-ccccchHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCcccc
Confidence 3 3322221111111111111111 12211111 111 11123345666778889999999999999999999998 8
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHhHhc
Q 013866 252 MITAVRISLVICAAIYFSVGLFGYLLF 278 (435)
Q Consensus 252 ~~~~~~~s~~~~~~~y~~~~~~gy~~f 278 (435)
.+|++..+..++.++|.+..+......
T Consensus 224 iPrai~~s~~i~~v~Y~l~~~~~~~~~ 250 (445)
T PRK10644 224 VPIATIGGVLIAAVCYVLSSTAIMGMI 250 (445)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999876644333
No 19
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=99.73 E-value=2.6e-14 Score=141.05 Aligned_cols=242 Identities=13% Similarity=0.023 Sum_probs=153.2
Q ss_pred CCCCCCchHHHHHHHHHHHHhhhhchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHhh-hcCCCCHHHHHHHHhCh
Q 013866 16 KTEKRPSVSGAVFNVATSIIGAGIMSIPATIKVLGVIPAFVLIVIIACLTDISVDFLMRYTN-AGETSTYAGVMRESFGR 94 (435)
Q Consensus 16 ~~~~~~s~~~~~~~l~~~~iG~GiL~LP~~~~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~-~~~~~~y~~l~~~~~G~ 94 (435)
+++|+.+.++.+...+++++|+|++.+|...++.|. ..+..++++++........+.|... .++.....+.+++ +|+
T Consensus 2 ~~~~~lg~~~~~~l~vg~~IGsGif~lp~~~a~~G~-~~i~~wli~~~~~l~~al~~aEL~s~~P~~GG~y~y~~~-~g~ 79 (435)
T PRK10435 2 SSAKKIGLFACTGVVAGNMMGSGIALLPANLASIGS-IAIWGWIISIIGAMSLAYVYARLATKNPQQGGPIAYAGE-ISP 79 (435)
T ss_pred CCCCcCCHHHHHHHHHhhHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhHHHHH-HCc
Confidence 457899999999999999999999999999998885 4778888888888888888888654 4555666667788 799
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCccccchhhhhhcCccccchHHHHHHHHHHHHhccccccccchhh
Q 013866 95 AGSVAVQLCVMITNLGCLIIFLIIIGDVLCGKQPEGSVHLGVLQEWFGFHWWNTRVFALLFVMVFVMLPLALFRRVGSLR 174 (435)
Q Consensus 95 ~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~l~ 174 (435)
+.++.+.+..+.........+.....+++...+++.. .+ .......+.++. ++-+...+..+...
T Consensus 80 ~~gf~~gw~~~~~~~~~~~~~~~~~~~y~~~~~p~~~-----------~~-~~~~~~~~~i~~---~~~~ln~~gvk~~~ 144 (435)
T PRK10435 80 AFGFQTGVLYYHANWIGNLAIGITAVSYLSTFFPVLN-----------DP-IPAGIACIAIVW---VFTFVNMLGGTWVS 144 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccC-----------Ch-HHHHHHHHHHHH---HHHHHHHHhHHHHH
Confidence 9999999887765544444554444455543333110 00 010111111111 11122233334444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-CCCCCCCCCcccchhhhhhhhhhhhhhhhcccchhhhhhcCCCCc-hh
Q 013866 175 FSSAISVLLAVIFVAICSVMAIYAVWEGKSK-TPKLLPQLDNHVSVFDLFTAVPVIVTAFTFHFNVHPIGFEFDKPS-DM 252 (435)
Q Consensus 175 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~-~~ 252 (435)
.++.+..++.++.+ ++..+....+.+.+ ....+.. ....++.++..++....|+|.|.+.+....+|+|||+ +.
T Consensus 145 ~i~~i~~~~~li~~---~~~~i~g~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~~faf~G~E~~~~~a~E~knP~r~i 220 (435)
T PRK10435 145 RLTTIGLVLVLIPV---VGTAIVGWHWFDAATYAANWNT-SDTTDGHAIIKSILLCLWAFVGVESAAVSTGMVKNPKRTV 220 (435)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHcCHHhhcccccC-CCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCccccc
Confidence 44433332211111 11111111111110 0011111 1123467888999999999999999999999999997 89
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHhHhc
Q 013866 253 ITAVRISLVICAAIYFSVGLFGYLLF 278 (435)
Q Consensus 253 ~~~~~~s~~~~~~~y~~~~~~gy~~f 278 (435)
+|++..+..++.++|+...+......
T Consensus 221 PrAi~~~~~iv~ilYil~~~~~~~~~ 246 (435)
T PRK10435 221 PLATMLGTGLAGIIYIAATQVISGMF 246 (435)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999876554433
No 20
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=99.73 E-value=3.7e-14 Score=141.26 Aligned_cols=360 Identities=13% Similarity=0.093 Sum_probs=202.0
Q ss_pred CCCchHHHHHHHHHHHHhhhhchHHHHHH-hhChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCC-CHHHHHHHHhChh
Q 013866 19 KRPSVSGAVFNVATSIIGAGIMSIPATIK-VLGVIPAFVLIVIIACLTDISVDFLMRYTNAG-ETS-TYAGVMRESFGRA 95 (435)
Q Consensus 19 ~~~s~~~~~~~l~~~~iG~GiL~LP~~~~-~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~-~~~-~y~~l~~~~~G~~ 95 (435)
|+.++++.+...+++++|+|++.+|.... .+|....++.+++.++........+.|..... +.. ...+.+++.+||+
T Consensus 1 ~~lgl~~~~~l~vg~~IGsGif~~~~~~~~~ag~~~~l~~w~i~~~~~~~~al~~aeL~s~~P~~gGG~y~y~~~~fG~~ 80 (468)
T TIGR03810 1 KKLGLGALTALVVGSMIGSGIFSLPSDMAAGAAAGAVLIGWVITGVGMLALAFSFQNLANKKPELDGGVYSYAKAGFGPF 80 (468)
T ss_pred CCCCHHHHHHHHHHhHHhhHHHHhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhhHHhHcCcH
Confidence 67899999999999999999999998755 55644456778899999988889999966543 333 5667799999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCccccchhhhhhcCccccchHHHHHHHHHHHHhccccccccchhhH
Q 013866 96 GSVAVQLCVMITNLGCLIIFLIIIGDVLCGKQPEGSVHLGVLQEWFGFHWWNTRVFALLFVMVFVMLPLALFRRVGSLRF 175 (435)
Q Consensus 96 ~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~l~~ 175 (435)
.++++.+..++........+.....+.+...+++... . ............+..+-....+..+....
T Consensus 81 ~gf~~gw~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~----------~---~~~~~~~~~~~~~~~~~~ln~~Gv~~~~~ 147 (468)
T TIGR03810 81 MGFISAWGYWLSAWLGNVAYATLLFSTLGYFFPIFGG----------G---NNPPSIIGASVLLWCVHFLVLRGVEGAAF 147 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC----------C---CcHHHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 9999999988776555556655555444333321100 0 00111111111111222222344444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCC----CcccchhhhhhhhhhhhhhhhcccchhhhhhcCCCCch
Q 013866 176 SSAISVLLAVIFVAICSVMAIYAVWEGKSKTPKLLPQL----DNHVSVFDLFTAVPVIVTAFTFHFNVHPIGFEFDKPSD 251 (435)
Q Consensus 176 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~ 251 (435)
++.+..+.-+..+++.++..... .+++.-.++.+++. .....+.++..++....|+|.|.+......+|.||+++
T Consensus 148 i~~i~~~~ki~~l~~~ii~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~e~k~~k~ 226 (468)
T TIGR03810 148 INTITTIAKLVPLFVFIVIGIFA-FKGDTFTNDFWGNANGGFSLGSVMTQVKNMMLVTVWVFIGIEGASMLSARAEKRSD 226 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hcHhhcCccccccccccCccccHHHHHHHHHHHHHHHHHhHhHHhhhHhhccCccc
Confidence 44333222221111111111111 11211111111110 01122345667888899999999999999999999889
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHhHhcCCCcc----hh-hhcCCCcCCcchhhhHHHHHHHHHHHHHHHHhhhhhhhHHH
Q 013866 252 MITAVRISLVICAAIYFSVGLFGYLLFGESIM----SD-ILINFDQSSGSAISSLLNDLVRLSYALHLMLVFPMLNFSLR 326 (435)
Q Consensus 252 ~~~~~~~s~~~~~~~y~~~~~~gy~~fg~~~~----~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 326 (435)
.+|++..+...+.++|....+..+...+++.. ++ ...-+.+ ..+++...+..+...++.+.+....+....
T Consensus 227 ip~ai~~~~~~v~~lY~l~~~~~~g~~~~~~l~~~~~p~~~~~~~~----~~g~~~~~~i~~~~~is~~~~~~~~~~~~s 302 (468)
T TIGR03810 227 VGKATVIGLIGVLAIYVLVSVLSYGIMTQAQLAGLKNPSMAYVLEH----MVGTWGAVLINIGLIISILGAWLSWTLLPA 302 (468)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHhcCCCchHHHHHHH----HcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999987766654432111 11 0000000 112455567777777777777777777666
Q ss_pred HHHHHhhccCCccc------ccccchhh-hHHHHHHHHHHHHHhh-cCCHHHHHHhhhhhhhhhHHHhhhhHHHHHhcCC
Q 013866 327 ANIDELLFSQKPLL------AKDTKRFL-SITLVLLVFSYTAAIT-IPDIWYFFQFLGSTSAVCLAFIFPGVIVLRDVHG 398 (435)
Q Consensus 327 ~~~~~~~~~~~~~~------~~~~~~~~-~~~~~~~~~~~~~a~~-~p~~~~~~~~~G~~~~~~~~~i~P~~~~~~~~~~ 398 (435)
+.....-.++.-+. +.+.+.+. .....+..+..++... .+.++.+.++.+. ...+.|+++++.+++.+++
T Consensus 303 R~~~a~ardg~lP~~f~k~~~~~tP~~al~~~~~i~~~~~l~~~~~~~~~~~l~~~~~~--~~li~y~~~~~~~~~l~~~ 380 (468)
T TIGR03810 303 EIPLLMAKDKLMPKYFGKENANGAPTNALWLTNGLIQIFLLTTLFSEQAYNFAISLATS--AILVPYLWSAAYQVKLSWR 380 (468)
T ss_pred HHHHHHHhCCCccHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHh
Confidence 66665533222110 11222221 1111111111111111 1234555554333 4567888888888776543
No 21
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=99.72 E-value=2.9e-14 Score=142.27 Aligned_cols=300 Identities=11% Similarity=0.033 Sum_probs=174.2
Q ss_pred CCCCCchHHHHHHHHHHHHhhhhchHHHHHHhhC-hHHHHHHHHHHHHHHHHHHHHHHHHhh-hcC-CCCHHHHHHHHhC
Q 013866 17 TEKRPSVSGAVFNVATSIIGAGIMSIPATIKVLG-VIPAFVLIVIIACLTDISVDFLMRYTN-AGE-TSTYAGVMRESFG 93 (435)
Q Consensus 17 ~~~~~s~~~~~~~l~~~~iG~GiL~LP~~~~~~G-~~~g~i~l~~~~~~~~~s~~~l~~~~~-~~~-~~~y~~l~~~~~G 93 (435)
++|+.|.++++...+++++|+|++.+|....+.| ....++..++.+++.......+.|... .++ .....+.+++.+|
T Consensus 5 ~~~~l~~~~~~~l~ig~vIGsGif~~~~~~~~~~g~~~~~~~wli~~~~~~~~al~~aEl~s~~P~~sGG~y~y~~~~~G 84 (473)
T TIGR00905 5 KSKKLGLFALTALVIGSMIGSGIFSLPQNLASVAGPGAVIIGWIITGVGMLALAFVFAILATKKPELDGGIYAYAREGFG 84 (473)
T ss_pred cCCCccHHHHHHHHHHHHHhHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhhHHhHcc
Confidence 3678999999999999999999999999977544 334567788888888888888888654 444 4556678899999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCccccchhhhhhcCccccchHHHHHHHHHHHHhccccccccchh
Q 013866 94 RAGSVAVQLCVMITNLGCLIIFLIIIGDVLCGKQPEGSVHLGVLQEWFGFHWWNTRVFALLFVMVFVMLPLALFRRVGSL 173 (435)
Q Consensus 94 ~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~l 173 (435)
|+.++++.+.+++........+.....+.+..+++.... .. .....+..+..+.+.-....+..+..
T Consensus 85 ~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~----------~~---~~~~~~~~~~~~~~~~~ln~~Gi~~~ 151 (473)
T TIGR00905 85 PYIGFMSGWGYWLSAWIGNVAYAVLLFSALGYFFPLFGS----------GN---PVPSILGASVLLWVFTFLVLRGVRQA 151 (473)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC----------CC---cHHHHHHHHHHHHHHHHHHHhCHHHH
Confidence 999999999887766655566655555555443331100 00 01111111111112222233344444
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCC--CcccchhhhhhhhhhhhhhhhcccchhhhhhcCCCCch
Q 013866 174 RFSSAISVLLAVIFVAICSVMAIYAVWEGKSKTPKLLPQL--DNHVSVFDLFTAVPVIVTAFTFHFNVHPIGFEFDKPSD 251 (435)
Q Consensus 174 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~ 251 (435)
..++.+.....+..+++.++..+.. .+++....+..++. .....+..+..++....|+|.|.+......+|+||+++
T Consensus 152 ~~i~~~~~~~~l~~l~~~ii~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~~r~ 230 (473)
T TIGR00905 152 AFINTITTIAKLIPLFLFIIIGWFW-FKLDLFTADFWGHDVPSLGSVFSQVKNTMLVTLWVFIGIEGAVVSSGRAKNKSD 230 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-hCchhcccccCccCCCcccchHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcccc
Confidence 4444433322221111111111111 12211011111110 11123456777888899999999999999999999558
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHhHhcCCCcchhhhcCCCc-CC---cchhhhHHHHHHHHHHHHHHHHhhhhhhhHHHH
Q 013866 252 MITAVRISLVICAAIYFSVGLFGYLLFGESIMSDILINFDQ-SS---GSAISSLLNDLVRLSYALHLMLVFPMLNFSLRA 327 (435)
Q Consensus 252 ~~~~~~~s~~~~~~~y~~~~~~gy~~fg~~~~~~i~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 327 (435)
.+|++..+..++.++|...........+. +++..+-.+ .. ....+.+...+..+...+..+.+....+....+
T Consensus 231 iPrai~~~~~i~~~~Yil~~~~~~~~~~~---~~l~~~~~p~~~~~~~~~~g~~~~~~i~i~~~is~~~~~~~~~~~~sR 307 (473)
T TIGR00905 231 VGKATVLGTLGALVIYILITLLSLGVLPQ---QELANLPNPSMAAVLEMIVGKWGAVLISLGLIISVLGSLLSWTMLAAE 307 (473)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhCcCH---HHHhhCCCchHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999886654433322 211111000 00 000112334445555556666665555555555
Q ss_pred HHHHhh
Q 013866 328 NIDELL 333 (435)
Q Consensus 328 ~~~~~~ 333 (435)
.+...-
T Consensus 308 ~~~ama 313 (473)
T TIGR00905 308 VPFSAA 313 (473)
T ss_pred HHHHHH
Confidence 555443
No 22
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=99.72 E-value=6.2e-15 Score=142.01 Aligned_cols=343 Identities=11% Similarity=0.205 Sum_probs=213.6
Q ss_pred CCCchHHHHHHHHHHHHhhhhchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHhChhHHH
Q 013866 19 KRPSVSGAVFNVATSIIGAGIMSIPATIKVLGVIPAFVLIVIIACLTDISVDFLMRYTNAGETSTYAGVMRESFGRAGSV 98 (435)
Q Consensus 19 ~~~s~~~~~~~l~~~~iG~GiL~LP~~~~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~y~~l~~~~~G~~~~~ 98 (435)
++.|.+|..+.++++++|+|++.+|....+.+-..+++..++.+++.......+.+..++.+..+..|..++.+||+.+.
T Consensus 1 ~~is~~q~~~l~~~~~iG~gil~~P~~~~~~a~~~~wi~~ll~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~Gk~~g~ 80 (359)
T TIGR00912 1 DKISSKQLIFLISSTMIGSGLLTLPALVSQSAGQDGWISIILGGLIIIFLLCLMIKIMSKFPEKNFSEILSKYLGKILGR 80 (359)
T ss_pred CcCcHHHHHHHHHHHHHHHHHHhhhHHHHhccCCCeeHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhhHHHHH
Confidence 46899999999999999999999999877655567888899999999999999999887777779999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCccccchhhhhhcCccccchHHHHHHHHHHHHhccccccccchhhHHHH
Q 013866 99 AVQLCVMITNLGCLIIFLIIIGDVLCGKQPEGSVHLGVLQEWFGFHWWNTRVFALLFVMVFVMLPLALFRRVGSLRFSSA 178 (435)
Q Consensus 99 ~~~~~~~~~~~g~~~~y~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~l~~~s~ 178 (435)
+..+....+....+.......++.++... .+. ...+......++..-....+..+...+.+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------l~~----tp~~~~~l~~l~~~~~~~~~Gi~~i~r~~~ 142 (359)
T TIGR00912 81 LLSILFILYFFLIAAYLIRIFADFIKTYL--------------LPR----TPIIVIIILIIIVSIYIVRKGIEVLLRTAE 142 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------------cCC----CCHHHHHHHHHHHHHHHHHccHHHHHHHHH
Confidence 99998888777776666666666653211 011 111122222222222334456666666665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcccchhhhhhhhh-hhhhhhhcccchhhhhhcCCCCchhHHHHH
Q 013866 179 ISVLLAVIFVAICSVMAIYAVWEGKSKTPKLLPQLDNHVSVFDLFTAVP-VIVTAFTFHFNVHPIGFEFDKPSDMITAVR 257 (435)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~faf~~~~~~~~i~~~m~~p~~~~~~~~ 257 (435)
+.....+... .++.... ..+..+..+..|-.+ .++.+...+.. ...++|.+........+++|||+|.+|+..
T Consensus 143 i~~~~~i~~~--~~il~~~--~~~~~~~~~l~P~~~--~g~~~~~~~~~~~~~~~f~g~~i~~~~~~~~~~~~~~~k~~~ 216 (359)
T TIGR00912 143 ILLIIFLILF--ILVLILL--APKLGNIKNLLPVLE--NGLSPILKGAYPVVTFAFGEIEIFFLLFPLLSKKKKIKKSII 216 (359)
T ss_pred HHHHHHHHHH--HHHHHHH--hcccccHHHccCccc--cCcHHHHhhhhHHhhhhhHHHHHHHHHHHHhCChhhhHHHHH
Confidence 5543322221 0111111 112222333444332 34455555554 788999999998999999999999999999
Q ss_pred HHHHHHHHHHHHHHhHHhHhcCCCcchhh----hcCCCcCCcchhhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhh
Q 013866 258 ISLVICAAIYFSVGLFGYLLFGESIMSDI----LINFDQSSGSAISSLLNDLVRLSYALHLMLVFPMLNFSLRANIDELL 333 (435)
Q Consensus 258 ~s~~~~~~~y~~~~~~gy~~fg~~~~~~i----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 333 (435)
.+..++..+|....+.....+|.+..++. ......-+-+.+-+.+..+.-..+....+.......+.....+.+.+
T Consensus 217 ~~~~~~~~ly~~~~~~~i~~lg~~~~~~~~~P~~~~~~~i~~~~f~eR~e~~~~~~w~~~~f~~~~~~~~~~~~~~~~~~ 296 (359)
T TIGR00912 217 KAIIIGVLLYILTTFVSISVFGGNVTKNLYWPTLELIKLINIGDFIERFELIVMTFWVFIIFVKIAFYLYIAVKGLSKLF 296 (359)
T ss_pred HHHHHHHHHHHHHHHHHHheecHHHhhhhcccHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999998888888885433221 11000000001223344444455666777777778888888888765
Q ss_pred ccCCcccccccchhhhHHHHHHHHHHHHHhhcCC-HHH---HHHhhhhhhhhhHHHhhhhHHHHHhc
Q 013866 334 FSQKPLLAKDTKRFLSITLVLLVFSYTAAITIPD-IWY---FFQFLGSTSAVCLAFIFPGVIVLRDV 396 (435)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~p~-~~~---~~~~~G~~~~~~~~~i~P~~~~~~~~ 396 (435)
..+ + .|........ ..+.++ ..|| ... ..+..+ .......+++|.++.+...
T Consensus 297 ~~~-~------~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~P~ll~~i~~ 352 (359)
T TIGR00912 297 KKR-K------YSILILPVLM--VIFSIS-FFPDSSNQLFDYLEFLP-IIAIVFFLLLPLILFIIVK 352 (359)
T ss_pred CCC-C------cchhHHHHHH--HHHHHH-HccchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 322 1 2222211111 222233 3455 332 112222 2234566778998777644
No 23
>PRK15049 L-asparagine permease; Provisional
Probab=99.72 E-value=4.9e-14 Score=140.97 Aligned_cols=356 Identities=13% Similarity=0.100 Sum_probs=197.1
Q ss_pred CCCCchHHHHHHHHHHHHhhhhchHHH-HHHhhChHHHHHHHHHHHHHHHHHHHHHHHHh-hhcCCCCHHHHHHHHhChh
Q 013866 18 EKRPSVSGAVFNVATSIIGAGIMSIPA-TIKVLGVIPAFVLIVIIACLTDISVDFLMRYT-NAGETSTYAGVMRESFGRA 95 (435)
Q Consensus 18 ~~~~s~~~~~~~l~~~~iG~GiL~LP~-~~~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~-~~~~~~~y~~l~~~~~G~~ 95 (435)
+|+.+.++..+..++.++|+|++..|. +++++|. .+++..++.+++.......+.|.. ..+......+.+++.+|++
T Consensus 27 ~r~L~~~~~~~i~~G~~IGsGiF~~~g~~~~~aGp-~~il~~li~~i~~~~v~~slaELas~~P~aGg~y~y~~~~~G~~ 105 (499)
T PRK15049 27 HKAMGNRQVQMIAIGGAIGTGLFLGAGARLQMAGP-ALALVYLICGLFSFFILRALGELVLHRPSSGSFVSYAREFLGEK 105 (499)
T ss_pred hccCCHhHhHHHhhhccccchHHHhhHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCcH
Confidence 778999999999999999999998887 5667775 568899999999999999999965 4556778888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCccccchhhhhhcCccccchHHHHHHHHHHHHhccccccccchhhH
Q 013866 96 GSVAVQLCVMITNLGCLIIFLIIIGDVLCGKQPEGSVHLGVLQEWFGFHWWNTRVFALLFVMVFVMLPLALFRRVGSLRF 175 (435)
Q Consensus 96 ~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~l~~ 175 (435)
.++++.+..++........-....+..... .+ . ++. .+.......++.+...+.+.-.|...+++.
T Consensus 106 ~gf~~GW~~~l~~~~~~~~~~~a~~~~~~~-~~----------~-~~~--~~~~~~~~~~~~l~~~iN~~gvk~~~~i~~ 171 (499)
T PRK15049 106 AAYVAGWMYFINWAMTGIVDITAVALYMHY-WG----------A-FGG--VPQWVFALAALTIVGTMNMIGVKWFAEMEF 171 (499)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hc----------c-CCC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988876543333323233332210 00 0 000 010111122222222222223333333332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC--CCCCCCc-----ccchhhhhhhhhhhhhhhhcccchhhhhhcCCC
Q 013866 176 SSAISVLLAVIFVAICSVMAIYAVWEGKSKTPK--LLPQLDN-----HVSVFDLFTAVPVIVTAFTFHFNVHPIGFEFDK 248 (435)
Q Consensus 176 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-----~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~ 248 (435)
....-.+..+. ..++..+.....+...... ......+ ..++.+.+.++...+|+|.|.+.+....+|.||
T Consensus 172 ~~~~iki~~l~---~~ii~~i~~~~~~~~~~~~~~~f~~~~~~~~~~p~g~~~~~~~~~~~~faf~G~e~i~~~aeE~kn 248 (499)
T PRK15049 172 WFALIKVLAIV---TFLVVGTVFLGSGQPLDGNTTGFHLITDNGGFFPHGLLPALVLIQGVVFAFASIEMVGTAAGECKD 248 (499)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHhCCCCCCCCCcccccccCCCCcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcC
Confidence 22211111111 1111111111112111000 0000000 122344556667899999999999999999999
Q ss_pred Cc-hhHHHHHHHHHHHHHHHHHHHhHHhHhcCCCc----chhhhcCCCcCCcchhhhHHHHHHHHHHHHHHHHhhhhhhh
Q 013866 249 PS-DMITAVRISLVICAAIYFSVGLFGYLLFGESI----MSDILINFDQSSGSAISSLLNDLVRLSYALHLMLVFPMLNF 323 (435)
Q Consensus 249 p~-~~~~~~~~s~~~~~~~y~~~~~~gy~~fg~~~----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 323 (435)
|+ +.+|++..+.....++|+..........+.+. .++...-+.... .++...+..+...+..+.+..-.++
T Consensus 249 P~r~iPrAi~~~~~~i~~~yi~~~~~~~~~~p~~~~~~~~sP~~~~~~~~g----~~~~~~ii~~~ilia~~ss~ns~~~ 324 (499)
T PRK15049 249 PQTMVPKAINSVIWRIGLFYVGSVVLLVMLLPWSAYQAGQSPFVTFFSKLG----VPYIGSIMNIVVLTAALSSLNSGLY 324 (499)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHheecchhccCcCCCHHHHHHHHcC----chhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99 69999999999998888886555444333211 111111111111 1234456666677777777777777
Q ss_pred HHHHHHHHhhccCCccc------ccccchhh-hHHHHHHHHHHHHHhhcCC--HHHHHHhhhhhhhhhHHHhhhhHHHHH
Q 013866 324 SLRANIDELLFSQKPLL------AKDTKRFL-SITLVLLVFSYTAAITIPD--IWYFFQFLGSTSAVCLAFIFPGVIVLR 394 (435)
Q Consensus 324 ~~~~~~~~~~~~~~~~~------~~~~~~~~-~~~~~~~~~~~~~a~~~p~--~~~~~~~~G~~~~~~~~~i~P~~~~~~ 394 (435)
...+.+..+-.++.-+. +.+.+.+. ....++..+..++....|+ ++.++++.+ ....+.|++|.+.+++
T Consensus 325 ~~sR~l~a~Ardg~lP~~f~kv~k~~~P~~Ail~~~~i~~l~~~l~~~~~~~~f~~l~~~~~--~~~li~y~~~~~~~l~ 402 (499)
T PRK15049 325 CTGRILRSMAMGGSAPSFMAKMSRQHVPYAGILATLVVYVVGVFLNYLVPSRVFEIVLNFAS--LGIIASWAFIIVCQMR 402 (499)
T ss_pred HHHHHHHHHHhcCCcCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 77776665543322211 01112221 1122221122222223332 445555533 3567788888888887
Q ss_pred hcC
Q 013866 395 DVH 397 (435)
Q Consensus 395 ~~~ 397 (435)
.++
T Consensus 403 ~R~ 405 (499)
T PRK15049 403 LRK 405 (499)
T ss_pred HHH
Confidence 654
No 24
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.71 E-value=1.2e-15 Score=145.68 Aligned_cols=368 Identities=15% Similarity=0.148 Sum_probs=237.8
Q ss_pred CCCCCCchHHHHHHHHHHHHhhhhchHHHHHH-hhC-hHHHHHHHHHHHHHHHHHHHHHHHHhh-hc-CCCCHHHHHHHH
Q 013866 16 KTEKRPSVSGAVFNVATSIIGAGIMSIPATIK-VLG-VIPAFVLIVIIACLTDISVDFLMRYTN-AG-ETSTYAGVMRES 91 (435)
Q Consensus 16 ~~~~~~s~~~~~~~l~~~~iG~GiL~LP~~~~-~~G-~~~g~i~l~~~~~~~~~s~~~l~~~~~-~~-~~~~y~~l~~~~ 91 (435)
+.+|+.+.+..+..++++++|+|++.-|.... ++| ...+++.++++++++.....+..|... -+ +..+|.- ..++
T Consensus 9 ~~~kkigll~~v~livg~iIGsGIFvsp~~Vl~~~gsvg~sL~iWv~~gi~s~~galcyaELGT~ipksGgd~ay-i~~a 87 (479)
T KOG1287|consen 9 QLKKKIGLLSGVSLIVGNIIGSGIFVSPKGVLANTGSVGLSLIIWVFCGIISIIGALCYAELGTSIPKSGGDYAY-ISEA 87 (479)
T ss_pred cccceeeeecceeEEEEeeEecccccCcHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcchhh-HHHH
Confidence 45889999999999999999999999998865 444 667889999999999999999999653 22 3444433 5788
Q ss_pred hChhHHHHHHHHHHHHHHHHH-HHHHHhhhcc-cCCCCCCCccccchhhhhhcCccccchHHHHHHHHHHHHhccccccc
Q 013866 92 FGRAGSVAVQLCVMITNLGCL-IIFLIIIGDV-LCGKQPEGSVHLGVLQEWFGFHWWNTRVFALLFVMVFVMLPLALFRR 169 (435)
Q Consensus 92 ~G~~~~~~~~~~~~~~~~g~~-~~y~~~~~~~-l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~ 169 (435)
||+..+....+.-.+...... ..+....+++ +++.+++. . .+....+..... ++-+....+
T Consensus 88 fg~~~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~fp~c-~----------~p~~~~~lla~~------~l~~lt~~n 150 (479)
T KOG1287|consen 88 FGPFPAFLFLWVSLLIIVPTSAAIIALTFATYLLKPFFPLC-D----------VPRVASKLLAAA------LLVLLTLIN 150 (479)
T ss_pred hccchhHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccCCCC-C----------CchHHHHHHHHH------HHHHHHHHh
Confidence 999888888877777666665 6788888887 67666521 0 011112222222 222222334
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHH---HHHHhcCCCCCCCCCCCCCcccchhhhhhhhhhhhhhhhcccchhhhhhcC
Q 013866 170 VGSLRFSSAISVLLAVIFVAICSVMA---IYAVWEGKSKTPKLLPQLDNHVSVFDLFTAVPVIVTAFTFHFNVHPIGFEF 246 (435)
Q Consensus 170 ~~~l~~~s~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m 246 (435)
..+.++...+..+.+..-+++...++ ++....++.+..+..+.-.+..+..++..++-...|||.|...+-.+.+|+
T Consensus 151 ~~~V~~a~~vq~~ft~~Kl~al~lIii~G~~~~~~g~~~~~~~~~f~g~~~~~g~i~lafysglfa~~GWd~lN~vteEi 230 (479)
T KOG1287|consen 151 SFSVKWATRVQIVFTIAKLLALLLIIITGLYLLFWGSTQNFENSEFEGSDTDVGNIALAFYSGLFAFSGWDYLNYVTEEI 230 (479)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhchheeEecccccccccccccCcCchHHHHHHHHHhhhcccCchhhccchHhh
Confidence 44445555555444443333333332 333333333322111111122345568889999999999999999999999
Q ss_pred CCCc-hhHHHHHHHHHHHHHHHHHHHhHHhHhcC--CCcchhhh-cCCCcCCcchhhhHHHHHHHHHHHHHHHHhhhhhh
Q 013866 247 DKPS-DMITAVRISLVICAAIYFSVGLFGYLLFG--ESIMSDIL-INFDQSSGSAISSLLNDLVRLSYALHLMLVFPMLN 322 (435)
Q Consensus 247 ~~p~-~~~~~~~~s~~~~~~~y~~~~~~gy~~fg--~~~~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 322 (435)
|||+ .+++++.+++.++++.|++.-++.+.+.. |...++.. ..+.+. ..+.+. ....+.++++.+.+....+
T Consensus 231 knP~ktLP~Ai~isi~lvt~iYil~NvAy~~vls~~e~l~S~aVav~Fa~~---~~G~~~-~~ip~~ValS~~G~~n~~i 306 (479)
T KOG1287|consen 231 KNPRRTLPRAILISIPLVTVIYVLVNVAYFTVLSPDEILSSDAVAVTFADR---ILGVFA-WAIPFSVALSLIGSLNSVI 306 (479)
T ss_pred cCccccchHHHHHhhHHHHHHHHHhHhheeEecCHHHhcccchHHHHHHHH---hccchH-HHHHHHHHHHhhhhhhhHH
Confidence 9999 79999999999999999998666554432 11111111 111111 122333 6778888999999988888
Q ss_pred hHHHHHHHHhhccCCcccc---cccchh-hhHHHHHHHHHHHHHhhcCCHHHHHHhhhhhhhhhHHHhhhhHHHHHhcCC
Q 013866 323 FSLRANIDELLFSQKPLLA---KDTKRF-LSITLVLLVFSYTAAITIPDIWYFFQFLGSTSAVCLAFIFPGVIVLRDVHG 398 (435)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~a~~~p~~~~~~~~~G~~~~~~~~~i~P~~~~~~~~~~ 398 (435)
+...+.+......++-+.. .+.++. -...+++.....++....+|+..++++.+-.-.....+..=+++++|.+++
T Consensus 307 fs~SR~~~~~areG~LP~~~s~i~~~~~TP~~allf~~~~~i~~~~~~d~~~LIny~sf~~~l~~~l~~~gll~lR~k~p 386 (479)
T KOG1287|consen 307 FSSSRLFYAGAREGHLPAFFSMISVRRFTPRPALLFSGLLSIVLSLIGDFDQLINYVSFAYWLFRGLSMAGLLWLRWKHP 386 (479)
T ss_pred HHHHHHHHHHHHccCccHHHHhhcCCCCCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 8887777665544333211 011111 112334444455555667799999999988888888888889999998877
Q ss_pred CCchhhh
Q 013866 399 ISTTRDR 405 (435)
Q Consensus 399 ~~~~~~~ 405 (435)
+.+|.-|
T Consensus 387 ~~~rPiK 393 (479)
T KOG1287|consen 387 PLPRPIK 393 (479)
T ss_pred CCCCCEe
Confidence 6655544
No 25
>PRK11387 S-methylmethionine transporter; Provisional
Probab=99.71 E-value=4.1e-14 Score=141.09 Aligned_cols=294 Identities=14% Similarity=0.083 Sum_probs=171.2
Q ss_pred CCCCCchHHHHHHHHHHHHhhhhchHHHH-HHhhChHHHHHHHHHHHHHHHHHHHHHHHHhh-hcCCCCHHHHHHHHhCh
Q 013866 17 TEKRPSVSGAVFNVATSIIGAGIMSIPAT-IKVLGVIPAFVLIVIIACLTDISVDFLMRYTN-AGETSTYAGVMRESFGR 94 (435)
Q Consensus 17 ~~~~~s~~~~~~~l~~~~iG~GiL~LP~~-~~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~-~~~~~~y~~l~~~~~G~ 94 (435)
-+|+.+.++.....++.++|+|++..|.. .+.+|....++..++.+++.......+.|... .++...+.+.+++.+|+
T Consensus 12 l~r~L~~~~~~~l~ig~~IG~Gif~~~g~~~~~~G~~~~~l~~~i~~~~~~~~~~~~aELas~~P~aGG~y~y~~~~~g~ 91 (471)
T PRK11387 12 FKRTMKVRHLVMLSLGGVIGTGLFFNTGYIISTTGAAGTLLAYLIGALVVYLVMQCLGELSVAMPETGAFHVYAARYLGP 91 (471)
T ss_pred hhhcCcHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhcCh
Confidence 47889999999999999999999988866 56777544677889999999999999999654 55567777889999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCccccchhhhhhcCccccchHHHHHHHHHHHHhccccccccchhh
Q 013866 95 AGSVAVQLCVMITNLGCLIIFLIIIGDVLCGKQPEGSVHLGVLQEWFGFHWWNTRVFALLFVMVFVMLPLALFRRVGSLR 174 (435)
Q Consensus 95 ~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~l~ 174 (435)
+.++++.+..++.....+.......+..++...++ .+......++...+..+. .+..+...
T Consensus 92 ~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~p~----------------~~~~~~~~~~~~~~~~in---~~gvk~~~ 152 (471)
T PRK11387 92 ATGYTVAWLYWLTWTVALGSSLTAAGFCMQYWFPQ----------------VPVWPWCLLFCALIFGLN---VVSTRFFA 152 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc----------------CcHHHHHHHHHHHHHHHH---HHhHHHHH
Confidence 99999999888776555544433344333222211 011111111111112222 22333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCCCCCCCCCCC--cc--cchhhhhhhhhhhhhhhhcccchhhhhhcC
Q 013866 175 FSSAISVLLAVIFVAICSVMAIYAVWEG----KSKTPKLLPQLD--NH--VSVFDLFTAVPVIVTAFTFHFNVHPIGFEF 246 (435)
Q Consensus 175 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~faf~~~~~~~~i~~~m 246 (435)
..+.....+-+..++..++..+...... ..+.....++.+ ++ .+..++..++....|+|.|.+.+....+|+
T Consensus 153 ~~~~~~~~~ki~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~ 232 (471)
T PRK11387 153 EGEFWFSLIKVVTILAFIVLGGAAIFGFIPMQDGSPAPGLRNLTAEGWFPHGGLPILMTMVAVNFAFSGTELIGIAAGET 232 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCcccccCCCCCCcccHHHHHHHHHHHHHHHcCHHHHHHHHHHh
Confidence 2222211111111111111111111100 000000111111 11 123457778888999999999999999999
Q ss_pred CCCc-hhHHHHHHHHHHHHHHHHHHHhHHhHhcCCCc----chhhhcCCCcCCcchhhhHHHHHHHHHHHHHHHHhhhhh
Q 013866 247 DKPS-DMITAVRISLVICAAIYFSVGLFGYLLFGESI----MSDILINFDQSSGSAISSLLNDLVRLSYALHLMLVFPML 321 (435)
Q Consensus 247 ~~p~-~~~~~~~~s~~~~~~~y~~~~~~gy~~fg~~~----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 321 (435)
|||+ +.+|++..+..++.++|+...+......+.+. +++...-+.... .++...+..+...+..+.+....
T Consensus 233 knP~r~iPrAi~~~~~~~~~~y~~~~~~~~~~~p~~~~~~~~~p~~~~~~~~g----~~~~~~ii~~~~~~s~~~~~~~~ 308 (471)
T PRK11387 233 ENPAKVIPVAIRTTIARLVIFFVGTVLVLAALIPMQQAGVEKSPFVLVFEKVG----IPYAADIFNFVILTAILSAANSG 308 (471)
T ss_pred cChhhHHHHHHHHHHHHHHHHHHHHHHHHheecCccccCccCChHHHHHHHcC----CchHHHHHHHHHHHHHHHHHHHH
Confidence 9999 79999999999999999987655443333211 111111111111 12444555666666666666666
Q ss_pred hhHHHHHHHHhh
Q 013866 322 NFSLRANIDELL 333 (435)
Q Consensus 322 ~~~~~~~~~~~~ 333 (435)
++...+.+...-
T Consensus 309 ~~~~sR~l~a~a 320 (471)
T PRK11387 309 LYASGRMLWSLS 320 (471)
T ss_pred HHHhhHHHHHHH
Confidence 666666666554
No 26
>PRK11021 putative transporter; Provisional
Probab=99.71 E-value=6.1e-14 Score=137.49 Aligned_cols=346 Identities=15% Similarity=0.143 Sum_probs=190.4
Q ss_pred CchHHHHHHHHHHHHhhhhchHHHHHH-hhChHHHHHHHHHHHHHHHHHHHHHHHHhh-hcCCCCHHHHHHHHhChhHHH
Q 013866 21 PSVSGAVFNVATSIIGAGIMSIPATIK-VLGVIPAFVLIVIIACLTDISVDFLMRYTN-AGETSTYAGVMRESFGRAGSV 98 (435)
Q Consensus 21 ~s~~~~~~~l~~~~iG~GiL~LP~~~~-~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~-~~~~~~y~~l~~~~~G~~~~~ 98 (435)
.++++++...+++++|+|++.+|.... .+| ...+...++.+++.......+.|... .++.......+++.+||+.++
T Consensus 1 ~g~~~~~~l~~g~~IGsGif~~~g~~~~~aG-~~~~~~~~i~~~~~~~~al~~aEl~s~~P~aGG~y~y~~~~~G~~~gf 79 (410)
T PRK11021 1 LGLWQGIGLLSTSLLGTGVFAVPALAALVAG-NNSLWAWPLLILLIFPIAIVFARLGRHFPHAGGPAHFVGMAFGPRLGR 79 (410)
T ss_pred CcHHHHHHHHHHHHHhhHHHHhHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHhHHHHhCchhHH
Confidence 378999999999999999999997755 556 46788999999999999999999654 455667778899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCccccchhhhhhcCccccchHHHHHHHHHHHHhccccccccchhhHHHH
Q 013866 99 AVQLCVMITNLGCLIIFLIIIGDVLCGKQPEGSVHLGVLQEWFGFHWWNTRVFALLFVMVFVMLPLALFRRVGSLRFSSA 178 (435)
Q Consensus 99 ~~~~~~~~~~~g~~~~y~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~l~~~s~ 178 (435)
...+..+...............+.+...++ ..... . +... .....++-....+..+...+++.
T Consensus 80 ~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~-~-~~~~-~~~~~~~~~ln~~Gv~~~~~~~~ 142 (410)
T PRK11021 80 VTGWLFLSVIPVGLPAALQIAAGFGQALFG--------------WSSWQ-L-LLAE-LLTLALLWLLNLRGASSSANLQT 142 (410)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHcC--------------CCCch-H-HHHH-HHHHHHHHHHHHhhHHHHHHHHH
Confidence 999888764333333332333333332222 11011 1 1111 11111222223344444444333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCC-CCCCCCcccchhhhhhhhhhhhhhhhcccchhhhhhcCCCCc-hhHHHH
Q 013866 179 ISVLLAVIFVAICSVMAIYAVWEGKSKTPK-LLPQLDNHVSVFDLFTAVPVIVTAFTFHFNVHPIGFEFDKPS-DMITAV 256 (435)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~-~~~~~~ 256 (435)
...+ ..+.+.. . .. ..++.+..+ .+++. +..++.++..++....|+|.|.+......+|+|||+ +.+|++
T Consensus 143 ~~~~---~~~~i~~-~-~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~k~iPrAi 214 (410)
T PRK11021 143 VIAL---LIVALVV-A-IW--WAGDIKPADIPFPAP-GSIEWSGLFAALGVMFWCFVGIEAFAHLASEFKNPERDFPRAL 214 (410)
T ss_pred HHHH---HHHHHHH-H-HH--HHcCCchhcCCCCCC-CCccHHHHHHHHHHHHHHHhcHHHHHhhHHhccCccccccHHH
Confidence 3221 1111111 1 11 112211111 11111 123567788899999999999999999999999998 799999
Q ss_pred HHHHHHHHHHHHHHHhHHh--HhcCCCcc--hhhhcCCCcCCcchhhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHh
Q 013866 257 RISLVICAAIYFSVGLFGY--LLFGESIM--SDILINFDQSSGSAISSLLNDLVRLSYALHLMLVFPMLNFSLRANIDEL 332 (435)
Q Consensus 257 ~~s~~~~~~~y~~~~~~gy--~~fg~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 332 (435)
..+..++.++|.+....-. ..++|... +.....+.+. .+++...+..+...+..+.+.........+.+...
T Consensus 215 ~~~~~~~~~lYil~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~G~~~~~ii~i~~~~s~~~~~~~~~~~~sR~l~a~ 290 (410)
T PRK11021 215 MIGLLLAGLVYWACTVVVLHFPAYGDKQAAAASLPGIFVQL----FGGYALWVICVIGYLACFASVNIYTQSFARLVWSQ 290 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcchhhccccHHHHHHHH----hCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999765432 22222211 1110001110 01122233344445555555555444455555544
Q ss_pred hccCCccc------ccccchhh-hHHHHHHHHHHHHH-hhcCCHHHHHHhhhhhhhhhHHHhhhhHHHHHhcCC
Q 013866 333 LFSQKPLL------AKDTKRFL-SITLVLLVFSYTAA-ITIPDIWYFFQFLGSTSAVCLAFIFPGVIVLRDVHG 398 (435)
Q Consensus 333 ~~~~~~~~------~~~~~~~~-~~~~~~~~~~~~~a-~~~p~~~~~~~~~G~~~~~~~~~i~P~~~~~~~~~~ 398 (435)
-.++.-++ +.+.+.+. .....+.....++. ....+++++++... ....+.|.++..-.++.+++
T Consensus 291 ardg~lP~~~~k~~~~~tP~~ail~~~~i~~~~~l~~~~~~~~~~~l~~~~~--~~~li~y~~~~~a~~~l~~~ 362 (410)
T PRK11021 291 AREGRPPSYLARLSARGVPVNALNAVLGCCAVSILLIYALGLNLEALIAYAN--GIFVLIYLLCMLAACKLLKG 362 (410)
T ss_pred HccCCccHHHHhhccCCCcHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHHHHHHhcc
Confidence 32221110 11122221 11111111111111 22457888777644 34567788777777776544
No 27
>PRK10746 putative transport protein YifK; Provisional
Probab=99.70 E-value=1.1e-13 Score=137.31 Aligned_cols=361 Identities=14% Similarity=0.076 Sum_probs=206.5
Q ss_pred CCCCCCchHHHHHHHHHHHHhhhhchHHHH-HHhhChHHHHHHHHHHHHHHHHHHHHHHHHh-hhcCCCCHHHHHHHHhC
Q 013866 16 KTEKRPSVSGAVFNVATSIIGAGIMSIPAT-IKVLGVIPAFVLIVIIACLTDISVDFLMRYT-NAGETSTYAGVMRESFG 93 (435)
Q Consensus 16 ~~~~~~s~~~~~~~l~~~~iG~GiL~LP~~-~~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~-~~~~~~~y~~l~~~~~G 93 (435)
+.+|+.+.++..+..++++||+|++..|.. .+.+|. ..++..++.+++.......+.|.. ..++..++.+.+++.+|
T Consensus 7 ~l~r~L~~~~~~~i~ig~~IGtGlf~~~g~~l~~aGp-~~~l~~~i~g~~~~~v~~~~aEl~~~~P~sGg~~~y~~~~~g 85 (461)
T PRK10746 7 ELQRGLEARHIELIALGGTIGVGLFMGAASTLKWAGP-SVLLAYIIAGLFVFFIMRSMGEMLFLEPVTGSFAVYAHRYMS 85 (461)
T ss_pred HHhccCcHHHHHHHHHHhhhhhhHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhC
Confidence 457889999999999999999999987755 667775 567888889999999999999964 45667788899999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCccccchhhhhhcCccccchHHHHHHHHHHHHhccccccccchh
Q 013866 94 RAGSVAVQLCVMITNLGCLIIFLIIIGDVLCGKQPEGSVHLGVLQEWFGFHWWNTRVFALLFVMVFVMLPLALFRRVGSL 173 (435)
Q Consensus 94 ~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~l 173 (435)
++.++++.+..++.....+.......+.+++..+++ .+...+..+++..+..+.+.-.|...++
T Consensus 86 ~~~Gf~~gw~~~~~~~~~~~~~~~a~~~~l~~~~p~----------------~~~~~~~~~~~~~~~~lN~~gv~~~~~~ 149 (461)
T PRK10746 86 PFFGYLTAWSYWFMWMAVGISEITAIGVYVQFWFPE----------------MAQWIPALIAVALVALANLAAVRLYGEI 149 (461)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC----------------CchHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 999999999998876666666655556555332221 1111122222222223333334444444
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC----CCCCCCCC-cccchhhhhhhhhhhhhhhhcccchhhhhhcCCC
Q 013866 174 RFSSAISVLLAVIFVAICSVMAIYAVWEGKSKT----PKLLPQLD-NHVSVFDLFTAVPVIVTAFTFHFNVHPIGFEFDK 248 (435)
Q Consensus 174 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~ 248 (435)
+.......+..+...++. ...+.....++.+. .+..++.. ...++.++..++....|+|.|.+.+....+|.||
T Consensus 150 e~~~~~~ki~~i~~~ii~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~~faf~G~e~v~~~a~E~kn 228 (461)
T PRK10746 150 EFWFAMIKVTTIIVMIVI-GLGVIFFGFGNGGQSIGFSNLTEHGGFFAGGWKGFLTALCIVVASYQGVELIGITAGEAKN 228 (461)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHhCCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHhcC
Confidence 433222111111111111 11111111111111 11111100 0124667889999999999999999999999999
Q ss_pred Cc-hhHHHHHHHHHHHHHHHHHHHhHHhHhcCCCcc----hhhhcCCCcCCcchhhhHHHHHHHHHHHHHHHHhhhhhhh
Q 013866 249 PS-DMITAVRISLVICAAIYFSVGLFGYLLFGESIM----SDILINFDQSSGSAISSLLNDLVRLSYALHLMLVFPMLNF 323 (435)
Q Consensus 249 p~-~~~~~~~~s~~~~~~~y~~~~~~gy~~fg~~~~----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 323 (435)
|+ +.+|++..+.....++|...........+.+.. ++....+..... +....+.+....+..+.+....++
T Consensus 229 P~k~iP~Ai~~~~~~i~~~yv~~~~~~~~~~p~~~~~~~~sp~v~~~~~~g~----~~~~~i~~~~il~a~~s~~n~~~~ 304 (461)
T PRK10746 229 PQVTLRSAVGKVLWRILIFYVGAIFVIVTIFPWNEIGSNGSPFVLTFAKIGI----TAAAGIINFVVLTAALSGCNSGMY 304 (461)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCCCCCCcHHHHHHHhCc----hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 98 899999988888888888864443333322111 111111111000 123345666667777777777777
Q ss_pred HHHHHHHHhhccCCcccc------cccchhh-hHHHHHHHHHHHHHhhcCCHHHHHHhhhhhh--hhhHHHhhhhHHHHH
Q 013866 324 SLRANIDELLFSQKPLLA------KDTKRFL-SITLVLLVFSYTAAITIPDIWYFFQFLGSTS--AVCLAFIFPGVIVLR 394 (435)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~------~~~~~~~-~~~~~~~~~~~~~a~~~p~~~~~~~~~G~~~--~~~~~~i~P~~~~~~ 394 (435)
...+.+...-.++.-+.. .+.+.+. .................|+-+.+.+..-+++ ...+.++.+++-+++
T Consensus 305 ~~sR~l~~~a~~g~lP~~~~~~~~~g~P~~al~~~~~~~~l~~~~~~~~~~~~~~f~~l~~~~~~~~~i~w~~i~~~~i~ 384 (461)
T PRK10746 305 SCGRMLYALAKNRQLPAAMAKVSRHGVPVAGVAVSILILLVGSCLNYIIPNPQRVFVYVYSASVLPGMVPWFVILISQLR 384 (461)
T ss_pred HHHHHHHHHHhCCCcCHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777766533322211 1112211 1111111222223334455444444333221 346778888888887
Q ss_pred hcCC
Q 013866 395 DVHG 398 (435)
Q Consensus 395 ~~~~ 398 (435)
.+++
T Consensus 385 ~r~~ 388 (461)
T PRK10746 385 FRRA 388 (461)
T ss_pred HHHh
Confidence 6543
No 28
>PRK10836 lysine transporter; Provisional
Probab=99.70 E-value=5.1e-13 Score=133.78 Aligned_cols=304 Identities=13% Similarity=0.051 Sum_probs=175.3
Q ss_pred CCCCCCCchHHHHHHHHHHHHhhhhchHHH-HHHhhChHHHHHHHHHHHHHHHHHHHHHHHHh-hhcCCCCHHHHHHHHh
Q 013866 15 SKTEKRPSVSGAVFNVATSIIGAGIMSIPA-TIKVLGVIPAFVLIVIIACLTDISVDFLMRYT-NAGETSTYAGVMRESF 92 (435)
Q Consensus 15 ~~~~~~~s~~~~~~~l~~~~iG~GiL~LP~-~~~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~-~~~~~~~y~~l~~~~~ 92 (435)
++.+|+.+.++..+..+++++|+|++.+|. +.+++|....++..++++++.......+.|.. ..++.....+.+++.+
T Consensus 11 ~~l~r~L~~~~~~~l~vG~~IGsGif~~~g~~~~~aGp~~~l~a~~i~g~~~~~~al~~aEL~s~~P~sGg~y~y~~~~~ 90 (489)
T PRK10836 11 PGLRRELKARHLTMIAIGGSIGTGLFVASGATISQAGPGGALLSYMLIGLMVYFLMTSLGELAAYMPVSGSFATYGQNYV 90 (489)
T ss_pred ccccccCcHHHHHHHHHhhhhhhhhhHhhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHc
Confidence 345788999999999999999999999996 56677865578999999999999999999955 4566777778889999
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCccccchhhhhhcCccccchHHHHHHHHHHHHhccccccccch
Q 013866 93 GRAGSVAVQLCVMITNLGCLIIFLIIIGDVLCGKQPEGSVHLGVLQEWFGFHWWNTRVFALLFVMVFVMLPLALFRRVGS 172 (435)
Q Consensus 93 G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~ 172 (435)
|+..++++.+..++........-.......++...++ .+.......++.++..+.+.-.|..++
T Consensus 91 g~~~gf~~Gw~~~~~~~~~~a~~~~a~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~lN~~gv~~~~~ 154 (489)
T PRK10836 91 EEGFGFALGWNYWYNWAVTIAVDLVAAQLVMSWWFPD----------------TPGWIWSALFLGVIFLLNYISVRGFGE 154 (489)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC----------------CchHHHHHHHHHHHHHHHHHcchhhhh
Confidence 9999999988877643333222222222223222111 001111222222223333444444444
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-CCCCCCCC--CcccchhhhhhhhhhhhhhhhcccchhhhhhcCCCC
Q 013866 173 LRFSSAISVLLAVIFVAICSVMAIYAVWEGKSK-TPKLLPQL--DNHVSVFDLFTAVPVIVTAFTFHFNVHPIGFEFDKP 249 (435)
Q Consensus 173 l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p 249 (435)
.+....+..+..+...++.....+....+++.+ ..+.+.+. ....++.++........|+|.|.+.+....+|.|||
T Consensus 155 ~~~~~~~~ki~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~knP 234 (489)
T PRK10836 155 AEYWFSLIKVTTVIVFIIVGVLMIIGIFKGAEPAGWSNWTIGDAPFAGGFAAMIGVAMIVGFSFQGTELIGIAAGESEDP 234 (489)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccCCCCCCCCcccHHHHHHHHHHHHHHHccHHHHHHHHHHhcCH
Confidence 443333222222211111111111111111100 01111100 001234455555666779999999999999999999
Q ss_pred c-hhHHHHHHHHHHHHHHHHHHHhHHhHhcCCCcchhhhcCCCcCCcchhh--------hHHHHHHHHHHHHHHHHhhhh
Q 013866 250 S-DMITAVRISLVICAAIYFSVGLFGYLLFGESIMSDILINFDQSSGSAIS--------SLLNDLVRLSYALHLMLVFPM 320 (435)
Q Consensus 250 ~-~~~~~~~~s~~~~~~~y~~~~~~gy~~fg~~~~~~i~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~p~ 320 (435)
+ +.+|++..+...+.++|...........+.+..+....+.....+.++. .+...+......+.++.+...
T Consensus 235 ~r~iPrAi~~~~~~v~~~Yvl~~~~~~~~vp~~~~~~~~~~~~~~~~sp~~~~~~~~g~~~~~~ii~~~il~a~~~~~n~ 314 (489)
T PRK10836 235 AKNIPRAVRQVFWRILLFYVFAILIISLIIPYTDPSLLRNDVKDISVSPFTLVFQHAGLLSAAAVMNAVILTAVLSAGNS 314 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHheecCCCChhhhccccccccCCcHHHHHHHcCChhHHHHHHHHHHHHHHHHHHH
Confidence 8 7999999999999999998765544433321111111111000000010 123445556666677777777
Q ss_pred hhhHHHHHHHHhhc
Q 013866 321 LNFSLRANIDELLF 334 (435)
Q Consensus 321 ~~~~~~~~~~~~~~ 334 (435)
.++...+.+...-.
T Consensus 315 ~~~~~sR~l~a~Ar 328 (489)
T PRK10836 315 GMYASTRMLYTLAC 328 (489)
T ss_pred HHHHHHHHHHHHHc
Confidence 77777777665543
No 29
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=99.69 E-value=9.6e-14 Score=137.90 Aligned_cols=296 Identities=13% Similarity=0.121 Sum_probs=180.0
Q ss_pred CCCCCCCCchHHHHHHHHHHHHhhhhchHH-HHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHhh-hcCCCCHHHHHHHH
Q 013866 14 SSKTEKRPSVSGAVFNVATSIIGAGIMSIP-ATIKVLGVIPAFVLIVIIACLTDISVDFLMRYTN-AGETSTYAGVMRES 91 (435)
Q Consensus 14 ~~~~~~~~s~~~~~~~l~~~~iG~GiL~LP-~~~~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~-~~~~~~y~~l~~~~ 91 (435)
+.+.+|+.+.++..+..+++++|+|++.+| .+.+++|. .+++..++.+++.......+.|... .++.....+.+++.
T Consensus 7 ~~~~~~~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~G~-~~~i~~~i~~v~~~~~a~~~aEl~s~~P~~Gg~~~~~~~~ 85 (452)
T TIGR01773 7 GLKLPNGLKTRHVTMLSIAGVIGAGLFVGSGSAIASAGP-AALLAYLLAGLLVVFIMRMLGEMAVANPDTGSFSTYADDA 85 (452)
T ss_pred hHhHhCcCcHHHHHHHHHhhhhhchHHHhhHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 334688999999999999999999999999 55778885 5788999999999999999999654 45667888899999
Q ss_pred hChhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCccccchhhhhhcCccccchHHHHHHHHHHHHhccccccccc
Q 013866 92 FGRAGSVAVQLCVMITNLGCLIIFLIIIGDVLCGKQPEGSVHLGVLQEWFGFHWWNTRVFALLFVMVFVMLPLALFRRVG 171 (435)
Q Consensus 92 ~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~ 171 (435)
+||+.++++.+..++.....+.......++.++..+++ .+.....+.++.....+...-.|..+
T Consensus 86 ~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~~~----------------~~~~~~~~~~~~~~~~~n~~gv~~~~ 149 (452)
T TIGR01773 86 IGRWAGFTIGWLYWWFWVLVIPLEAIAAAGILQYWFPD----------------IPLWLFSLILTIVLTLTNLYSVKSYG 149 (452)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc----------------CcHHHHHHHHHHHHHHHHHHhcchhh
Confidence 99999999999998877767666666666666433321 01111112212222222333334444
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CC---CCCCCCCC-cccchhhhhhhhhhhhhhhhcccchhhhhhc
Q 013866 172 SLRFSSAISVLLAVIFVAICSVMAIYAVWEGKS--KT---PKLLPQLD-NHVSVFDLFTAVPVIVTAFTFHFNVHPIGFE 245 (435)
Q Consensus 172 ~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~-~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~ 245 (435)
+++.+..+..+..+...++ ..+.....+.. +. .+..+..+ ...++.++..++....|+|.|.+......+|
T Consensus 150 ~~~~~~~~~ki~~l~~~ii---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~af~G~e~~~~~a~E 226 (452)
T TIGR01773 150 EFEFWFALIKVIAIIAFII---LGAVAIFGFAPGSEVSGFSNLTGKGGFFPNGIGAVLLAILVTMFSFMGTEIVTIAAAE 226 (452)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHcCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhccHHHHhHHHHh
Confidence 4443332222111111111 11111111111 10 11111000 0123456888999999999999999999999
Q ss_pred CCCCc-hhHHHHHHHHHHHHHHHHHHHhHHhHhcCCCcch-----hhhcCCCcCCcchhhhHHHHHHHHHHHHHHHHhhh
Q 013866 246 FDKPS-DMITAVRISLVICAAIYFSVGLFGYLLFGESIMS-----DILINFDQSSGSAISSLLNDLVRLSYALHLMLVFP 319 (435)
Q Consensus 246 m~~p~-~~~~~~~~s~~~~~~~y~~~~~~gy~~fg~~~~~-----~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 319 (435)
+|||+ +.+|++..+......+|+..........+.+..+ +....+... + .++...+......+..+.+..
T Consensus 227 ~k~P~r~iPrAi~~~~~~~~~~y~l~~~~~~~~~p~~~~~~~~~~p~~~~~~~~-g---~~~~~~ii~~~~~~~~~~~~~ 302 (452)
T TIGR01773 227 SSNPIKSITRATNSVIWRIIVFYLGSIFIVVALLPWNSPNLLEVGSYVAVLELL-G---IPHAKLIMDFVVLTAVLSCLN 302 (452)
T ss_pred hcChhhHHHHHHHHHHHHHHHHHHHHHHHHeeEeCCCCcccccCCcHHHHHHHc-C---ChhHHHHHHHHHHHHHHHHHH
Confidence 99998 7999998888888888888644443333311110 111001000 0 023344455555666666666
Q ss_pred hhhhHHHHHHHHhh
Q 013866 320 MLNFSLRANIDELL 333 (435)
Q Consensus 320 ~~~~~~~~~~~~~~ 333 (435)
.......+.+...-
T Consensus 303 ~~~~~~sR~~~a~a 316 (452)
T TIGR01773 303 SALYTTSRMLYSLA 316 (452)
T ss_pred HHHHHHHHHHHHHH
Confidence 66666666666554
No 30
>PRK10238 aromatic amino acid transporter; Provisional
Probab=99.69 E-value=1.4e-13 Score=136.56 Aligned_cols=358 Identities=13% Similarity=0.112 Sum_probs=203.4
Q ss_pred CCCCCCCCchHHHHHHHHHHHHhhhhchHHHH-HHhhChHHHHHHHHHHHHHHHHHHHHHHHHh-hhcCCCCHHHHHHHH
Q 013866 14 SSKTEKRPSVSGAVFNVATSIIGAGIMSIPAT-IKVLGVIPAFVLIVIIACLTDISVDFLMRYT-NAGETSTYAGVMRES 91 (435)
Q Consensus 14 ~~~~~~~~s~~~~~~~l~~~~iG~GiL~LP~~-~~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~-~~~~~~~y~~l~~~~ 91 (435)
.++.+|+.+.++..+..++.++|+|++..|.. .+++|. ..++..++.+++.......+.|.. +.+...++.+.+++.
T Consensus 7 ~~~l~r~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~Gp-~~i~~~~i~gi~~~~v~~s~aEl~s~~P~aGg~y~~~~~~ 85 (456)
T PRK10238 7 GEQLKRGLKNRHIQLIALGGAIGTGLFLGSASVIQSAGP-GIILGYAIAGFIAFLIMRQLGEMVVEEPVAGSFSHFAYKY 85 (456)
T ss_pred chhhhccCcHHHHHHHHhhccccchHHHhhHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 34568999999999999999999999988866 556664 577888999999999999999954 456677888889999
Q ss_pred hChhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCccccchhhhhhcCccccchHHHHHHHHHHHHhccccccccc
Q 013866 92 FGRAGSVAVQLCVMITNLGCLIIFLIIIGDVLCGKQPEGSVHLGVLQEWFGFHWWNTRVFALLFVMVFVMLPLALFRRVG 171 (435)
Q Consensus 92 ~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~ 171 (435)
+||..++++.+..++.....+.......++.++...++ .+......++......+.+.-.|..+
T Consensus 86 ~g~~~gf~~Gw~~~~~~~~~~~~~~~~~~~~~~~~~p~----------------~~~~~~~~i~~~~~~~lN~~gv~~~~ 149 (456)
T PRK10238 86 WGSFAGFASGWNYWVLYVLVAMAELTAVGKYIQFWYPE----------------IPTWVSAAVFFVVINAINLTNVKVFG 149 (456)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc----------------CcHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 99999999999999888777777777677766433221 01111112112222222333334444
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC----CCCCCCCC-cccchhhhhhhhhhhhhhhhcccchhhhhhcC
Q 013866 172 SLRFSSAISVLLAVIFVAICSVMAIYAVWEGKSKT----PKLLPQLD-NHVSVFDLFTAVPVIVTAFTFHFNVHPIGFEF 246 (435)
Q Consensus 172 ~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m 246 (435)
+++.....-. +..+++.++..+.....++..+ .+.++..+ ...++.++..++....|+|.|.+......+|+
T Consensus 150 ~~~~~~~~ik---i~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~aeE~ 226 (456)
T PRK10238 150 EMEFWFAIIK---VIAVVAMIIFGGWLLFSGNGGPQATVSNLWDQGGFLPHGFTGLVMMMAIIMFSFGGLELVGITAAEA 226 (456)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHcCCCCCCccccccCCCCCCccccHHHHHHHHHHHHHHhcCHHHHHHHHHhh
Confidence 4333322222 2111111111111111111111 11111100 01234567777888999999999999999999
Q ss_pred CCCc-hhHHHHHHHHHHHHHHHHHHHhHHh--HhcCCCc--chhhhcCCCcCCcchhhhHHHHHHHHHHHHHHHHhhhhh
Q 013866 247 DKPS-DMITAVRISLVICAAIYFSVGLFGY--LLFGESI--MSDILINFDQSSGSAISSLLNDLVRLSYALHLMLVFPML 321 (435)
Q Consensus 247 ~~p~-~~~~~~~~s~~~~~~~y~~~~~~gy--~~fg~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 321 (435)
|||+ +.+|++..+.....+.|........ ....+-. .++...-+.+..+ ++...+.+....+..+.+..-.
T Consensus 227 knP~r~iPrAi~~~~~~i~~~y~~~~~~~~~~~p~~~l~~~~sP~~~~~~~~g~----~~~~~i~~~~i~~~~~s~~~~~ 302 (456)
T PRK10238 227 DNPEQSIPKATNQVIYRILIFYIGSLAVLLSLMPWTRVTADTSPFVLIFHELGD----TFVANALNIVVLTAALSVYNSC 302 (456)
T ss_pred cChhhHHHHHHHHHHHHHHHHHHHHHHHHheecChhccCCCCCcHHHHHHHcCC----hHHHHHHHHHHHHHHHHHHHHH
Confidence 9998 7999998888888777766432211 1111110 1111111111111 2344455566666666666666
Q ss_pred hhHHHHHHHHhhccCCccc------ccccchhh-hHHHHHHHHHHHHHhhcCC--HHHHHHhhhhhhhhhHHHhhhhHHH
Q 013866 322 NFSLRANIDELLFSQKPLL------AKDTKRFL-SITLVLLVFSYTAAITIPD--IWYFFQFLGSTSAVCLAFIFPGVIV 392 (435)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~-~~~~~~~~~~~~~a~~~p~--~~~~~~~~G~~~~~~~~~i~P~~~~ 392 (435)
.+...+.+...-.++.-+. +++.+.+. .....+..+..+.....|+ ++.++++.+ ....+.|.+|.+.+
T Consensus 303 ~~~~sR~l~a~ardg~lP~~f~kv~~~~~P~~Ail~~~~i~~l~~l~~~~~~~~~f~~l~~~~~--~~~~i~y~~~~~~~ 380 (456)
T PRK10238 303 VYCNSRMLFGLAQQGNAPKALASVDKRGVPVNTILVSALVTALCVLINYLAPESAFGLLMALVV--SALVINWAMISLAH 380 (456)
T ss_pred HHHHHHHHHHHHhCCCccHHHHhhCcCCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 6666666665543222111 11122221 1121111111111112232 445555533 35568889999998
Q ss_pred HHhcC
Q 013866 393 LRDVH 397 (435)
Q Consensus 393 ~~~~~ 397 (435)
++.++
T Consensus 381 l~~r~ 385 (456)
T PRK10238 381 MKFRR 385 (456)
T ss_pred HHHHH
Confidence 88554
No 31
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=99.68 E-value=2.5e-14 Score=134.43 Aligned_cols=357 Identities=15% Similarity=0.125 Sum_probs=233.7
Q ss_pred CCCCCchHHHHHHHHHHHHhhhhc-hHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHhh-hcCCCCHHHHHHHHhCh
Q 013866 17 TEKRPSVSGAVFNVATSIIGAGIM-SIPATIKVLGVIPAFVLIVIIACLTDISVDFLMRYTN-AGETSTYAGVMRESFGR 94 (435)
Q Consensus 17 ~~~~~s~~~~~~~l~~~~iG~GiL-~LP~~~~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~-~~~~~~y~~l~~~~~G~ 94 (435)
-+|+.+.++--+.-++..||+|.+ +--.+.+.+|. --++.-+++|++...-++.+.|... ++..+++.+.+++.+|+
T Consensus 11 l~rgL~~RHIqlIAiGGaIGtGLFlGSg~~I~~AGP-SvlLaY~I~G~~~f~iMRaLGEm~~~~p~~gSF~~~a~~~lG~ 89 (462)
T COG1113 11 LKRGLKNRHIQLIAIGGAIGTGLFLGSGSAIAMAGP-SVLLAYLIAGIFVFLIMRALGEMLVANPVSGSFSDYARKYLGP 89 (462)
T ss_pred hhhhhHHHHHHHHHHhhhhhhhhhcccchhhhhhCc-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHhcc
Confidence 378899999999999999999974 56777889994 4577888999999999999999654 56788999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCccccchhhhhhcCccccchHHHHHHHHHHHHhccccccccchhh
Q 013866 95 AGSVAVQLCVMITNLGCLIIFLIIIGDVLCGKQPEGSVHLGVLQEWFGFHWWNTRVFALLFVMVFVMLPLALFRRVGSLR 174 (435)
Q Consensus 95 ~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~l~ 174 (435)
+++++..+.+++.-...+++-...++.+++..+|+. +.-.+.+....++....+...|...++.
T Consensus 90 ~Agf~tgW~YW~~wv~v~~ae~tAi~~y~~~WfP~v----------------P~Wv~al~~~~l~~~~NL~sVk~FGE~E 153 (462)
T COG1113 90 WAGFLTGWTYWFFWVLVGIAELTAIGIYLQFWFPDV----------------PQWVFALAAVVLLLAVNLISVKVFGELE 153 (462)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----------------cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998885444321 1112233334444566677889999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---CCCCCCCCCC-cccchhhhhhhhhhhhhhhhcccchhhhhhcCCCCc
Q 013866 175 FSSAISVLLAVIFVAICSVMAIYAVWEGKS---KTPKLLPQLD-NHVSVFDLFTAVPVIVTAFTFHFNVHPIGFEFDKPS 250 (435)
Q Consensus 175 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~ 250 (435)
+.-.+-.+.+++.+++.-...+.....++. ..++.+.+.. -++++.+++.++.+.+|||.+.+.+-.-.+|-|||+
T Consensus 154 fWfAlIKV~aIi~~Iv~G~~ll~~g~~~~~~~~g~snl~~hGGffP~G~~g~~~~~~~v~Faf~GiElvGitA~Et~dP~ 233 (462)
T COG1113 154 FWFALIKVAAIIAFIVVGIVLLFGGFGGGGGAAGFSNLWDHGGFFPNGFLGFLSALQIVMFAFGGIELVGITAAEAKDPE 233 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCccccccccCCCcCCCchHHHHHHHHHHHHHHhhHHHHHHHHHhhcChh
Confidence 554444434444443322222222221111 1122222111 124567899999999999999999999999999999
Q ss_pred -hhHHHHHHHHHHHHHHHHH-----HHhHHhHhcCCCcchhhhcCCCcCCcchhhhHHHHHHHHHHHHHHHHhhhhhhhH
Q 013866 251 -DMITAVRISLVICAAIYFS-----VGLFGYLLFGESIMSDILINFDQSSGSAISSLLNDLVRLSYALHLMLVFPMLNFS 324 (435)
Q Consensus 251 -~~~~~~~~s~~~~~~~y~~-----~~~~gy~~fg~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 324 (435)
..+|++.--..-..++|.. ..+.-|-.++++ +++..+.+..-+- .+...+.|+.+....+++..-.++.
T Consensus 234 k~ipkAin~V~~RI~iFYvgsl~vi~~l~PW~~~~~~-~SPFV~~f~~iGi----~~Aa~i~N~VVLtAa~S~~NSglys 308 (462)
T COG1113 234 KAIPKAINSVIWRILIFYVGSLFVILSLYPWNQIGED-GSPFVTVFSLIGI----PFAAGIMNFVVLTAALSALNSGLYS 308 (462)
T ss_pred hHHHHHHhhhhHHHHHHHHHHHHHHheeccccccCCC-CCcHHHHHHHcCC----cccccceeEEEeechhhcccccccc
Confidence 5667776655555555544 333333333332 2333333322110 1344567777788888888888999
Q ss_pred HHHHHHHhhccCCcccc-----ccc--chhhhHHHHHHHHHHHHHhhcCC--HHHHHHhhhhhhhhhHHHhhhhHHHHHh
Q 013866 325 LRANIDELLFSQKPLLA-----KDT--KRFLSITLVLLVFSYTAAITIPD--IWYFFQFLGSTSAVCLAFIFPGVIVLRD 395 (435)
Q Consensus 325 ~~~~~~~~~~~~~~~~~-----~~~--~~~~~~~~~~~~~~~~~a~~~p~--~~~~~~~~G~~~~~~~~~i~P~~~~~~~ 395 (435)
..+.++.+..+++.+.. ++. .+-+..+.....++.++....|+ |+.+.+..+........+| .+.|+|.
T Consensus 309 tsRmL~~la~~g~APk~~~klsk~gVP~~ai~~s~~~~~~~V~Lny~~P~~vF~~v~s~s~~~~l~vW~~I--~~s~l~~ 386 (462)
T COG1113 309 TSRMLYSLAKQGDAPKAFAKLSKRGVPVNAILLSAVVLLLGVVLNYILPEKVFELVTSSSGLGLLFVWLMI--LLSQLKL 386 (462)
T ss_pred cchHHHHHhhcCcccHhHhhccccCCCHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 98988887544333221 111 11234555556667777778884 4455555554444333333 4556665
Q ss_pred cC
Q 013866 396 VH 397 (435)
Q Consensus 396 ~~ 397 (435)
+|
T Consensus 387 rk 388 (462)
T COG1113 387 RK 388 (462)
T ss_pred Hh
Confidence 44
No 32
>TIGR00909 2A0306 amino acid transporter.
Probab=99.68 E-value=6.5e-14 Score=138.35 Aligned_cols=302 Identities=11% Similarity=0.068 Sum_probs=181.4
Q ss_pred CCCCchHHHHHHHHHHHHhhhhchHHHHHH-hhChHHHHHHHHHHHHHHHHHHHHHHHHhh-hcCCCCHHHHHHHHhChh
Q 013866 18 EKRPSVSGAVFNVATSIIGAGIMSIPATIK-VLGVIPAFVLIVIIACLTDISVDFLMRYTN-AGETSTYAGVMRESFGRA 95 (435)
Q Consensus 18 ~~~~s~~~~~~~l~~~~iG~GiL~LP~~~~-~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~-~~~~~~y~~l~~~~~G~~ 95 (435)
+|+.|.++.+...+++++|+|++.+|.... ..|. ..++.+++.+++.......+.|..+ .++.....+..++.+||+
T Consensus 2 ~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~-~~~l~~li~~~~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~G~~ 80 (429)
T TIGR00909 2 SRELGLFDLTMLGIGAMIGTGIFVVTGIAAGKAGP-AVILSFVLAGLTALFIALVYAELAAMLPVAGSPYTYAYEAMGEL 80 (429)
T ss_pred CccccHHHHHHHHHhhhhcchHHHhHHHHHHHcCC-HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcceeeHHHHhCcH
Confidence 578999999999999999999999997655 4453 4667788888888888888888664 344456667789999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCccccchhhhhhcCccccchHHHHHHHHHHHHhccccccccchhhH
Q 013866 96 GSVAVQLCVMITNLGCLIIFLIIIGDVLCGKQPEGSVHLGVLQEWFGFHWWNTRVFALLFVMVFVMLPLALFRRVGSLRF 175 (435)
Q Consensus 96 ~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~l~~ 175 (435)
.+++..+...+.....+..+....++.++.+++....+ . +.+......+...+.+..+..+.+.-....+..+...+
T Consensus 81 ~g~~~gw~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~g~~~~~~ 157 (429)
T TIGR00909 81 TAFIIGWSLWLEYGVAVAAVAVGWGGYLQEFLPGVGLD--L-PAVLTAKPGNGGVFNLPALLIVLFLTYILYLGAKESGK 157 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc--C-chhhhcCCcccccccHHHHHHHHHHHHHHHhCcHHHHH
Confidence 99999999888877777777777777765444310000 0 00000000000101011111112222223334444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcccchhhhhhhhhhhhhhhhcccchhhhhhcCCCCc-hhHH
Q 013866 176 SSAISVLLAVIFVAICSVMAIYAVWEGKSKTPKLLPQLDNHVSVFDLFTAVPVIVTAFTFHFNVHPIGFEFDKPS-DMIT 254 (435)
Q Consensus 176 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~-~~~~ 254 (435)
++.+...+.+..+++.++....+ .+ .++..+..+ .++.++..++...+|+|.|.+......+|+|||+ +.+|
T Consensus 158 ~~~v~~~~~i~~l~~~~~~~~~~---~~--~~~~~~~~~--~~~~~~~~~~~~~~~af~G~e~~~~~~~E~~~p~r~ip~ 230 (429)
T TIGR00909 158 VNDILVVLKVAALLLFAALGAIH---FA--SNNYTPFMP--MGFGGVGAATALVFFAFIGFEAISTAAEEVKNPERDIPK 230 (429)
T ss_pred HHHHHHHHHHHHHHHhhhHHHhh---Cc--HHhcCCCCC--CcHHHHHHHHHHHHHHHhhHHHHHhhHHhccCccccccH
Confidence 44444433332222222222211 11 111111111 2445678888999999999999999999999997 7899
Q ss_pred HHHHHHHHHHHHHHHHHhHHhHhcCCCcchhhhcCCCcC---CcchhhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Q 013866 255 AVRISLVICAAIYFSVGLFGYLLFGESIMSDILINFDQS---SGSAISSLLNDLVRLSYALHLMLVFPMLNFSLRANIDE 331 (435)
Q Consensus 255 ~~~~s~~~~~~~y~~~~~~gy~~fg~~~~~~i~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 331 (435)
++..+..+..++|...........+ .+++.++-.+. .....+++...+..+...+..+.+.........+.+..
T Consensus 231 ai~~~~~~~~v~Yil~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~~~~ 307 (429)
T TIGR00909 231 AIILSLIVVTLLYVLVAAVILGAVP---WRQLAGSTAPLSLVGYDLGQGIGGLILTAGAVFSIASVMLAGIYGTSRVLFA 307 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcC---HHHhCCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998655543222 11111100000 00001235555666777777777777766666666665
Q ss_pred hh
Q 013866 332 LL 333 (435)
Q Consensus 332 ~~ 333 (435)
.-
T Consensus 308 ~a 309 (429)
T TIGR00909 308 MS 309 (429)
T ss_pred HH
Confidence 54
No 33
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=99.67 E-value=9.2e-14 Score=137.74 Aligned_cols=243 Identities=13% Similarity=0.094 Sum_probs=144.1
Q ss_pred CCCCCCCchHHHHHHHHHHHHhhhhchHHHHH-HhhCh-HHHHHHHHHHHHHHHHHHHHHHHHhh-hcCCCCHHHHHHHH
Q 013866 15 SKTEKRPSVSGAVFNVATSIIGAGIMSIPATI-KVLGV-IPAFVLIVIIACLTDISVDFLMRYTN-AGETSTYAGVMRES 91 (435)
Q Consensus 15 ~~~~~~~s~~~~~~~l~~~~iG~GiL~LP~~~-~~~G~-~~g~i~l~~~~~~~~~s~~~l~~~~~-~~~~~~y~~l~~~~ 91 (435)
++-+|+.+.++.+...++.++|+|++..|... +..|- ...+..+++.+++.......+.|... .++........++.
T Consensus 4 ~~L~r~l~~~~~~~l~vg~~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~~l~~al~~aEl~s~~P~~GG~y~y~~~~ 83 (445)
T PRK11357 4 QELQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELSTAYPENGADYVYLKNA 83 (445)
T ss_pred ccccccccHHHHHHHHHHhheechhccchHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCceeeHHHh
Confidence 34588999999999999999999999998764 45563 34667788888888888888888654 33333333457789
Q ss_pred hChhHHHHHHHHHHH-HHHHHHHHHHHhhhcccCCCCCCCccccchhhhhhcCccccchHHHHHHHHHHHHhcccccccc
Q 013866 92 FGRAGSVAVQLCVMI-TNLGCLIIFLIIIGDVLCGKQPEGSVHLGVLQEWFGFHWWNTRVFALLFVMVFVMLPLALFRRV 170 (435)
Q Consensus 92 ~G~~~~~~~~~~~~~-~~~g~~~~y~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~ 170 (435)
+||..++++.+.... ........+....++++....+ ............ .+..+-....+..
T Consensus 84 ~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~--------------~~~~~~~~~~~~---~~~~~~~ln~~gv 146 (445)
T PRK11357 84 GSRPLAFLSGWASFWANDAPSLSIMALAIVSNLGFLTP--------------IDPLLGKFIAAG---LIIAFMLLHLRSV 146 (445)
T ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------------CchHHHHHHHHH---HHHHHHHHHHhhh
Confidence 999999998886443 3333344455555555432111 000101111111 1112222223333
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcccchhhhhhhhhhhhhhhhcccchhhhhhcCCCCc
Q 013866 171 GSLRFSSAISVLLAVIFVAICSVMAIYAVWEGKSKTPKLLPQLDNHVSVFDLFTAVPVIVTAFTFHFNVHPIGFEFDKPS 250 (435)
Q Consensus 171 ~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~ 250 (435)
+....++.+.....+..+++.++........++.+.+...+ .+...++.++..++....|+|.|.+......+|+|||+
T Consensus 147 ~~~~~v~~~~~~~~~~~l~~~ii~g~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~ 225 (445)
T PRK11357 147 EGGAAFQTLITIAKIIPFTIVIGLGIFWFKAENFAAPTTTA-IGATGSFMALLAGISATSWSYTGMASICYMTGEIKNPG 225 (445)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccc-ccccchHHHHHHHHHHHHHHHhhHHHHHhhHHHhcCcc
Confidence 33333333222222221111111112111111111111111 01112245677888899999999999999999999998
Q ss_pred -hhHHHHHHHHHHHHHHHHHHHhHHh
Q 013866 251 -DMITAVRISLVICAAIYFSVGLFGY 275 (435)
Q Consensus 251 -~~~~~~~~s~~~~~~~y~~~~~~gy 275 (435)
+.+|++..+..++.++|.+......
T Consensus 226 r~iP~Ai~~~~~i~~~~Y~l~~~~~~ 251 (445)
T PRK11357 226 KTMPRALIGSCLLVLVLYTLLALVIS 251 (445)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999998765433
No 34
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=99.67 E-value=5.6e-13 Score=132.81 Aligned_cols=294 Identities=14% Similarity=0.068 Sum_probs=169.4
Q ss_pred CCCCCCchHHHHHHHHHHHHhhhhchHHH-HHHhhChHHHHHHHHHHHHHHHHHHHHHHHHhhh-cCCCCHHHHHHHHhC
Q 013866 16 KTEKRPSVSGAVFNVATSIIGAGIMSIPA-TIKVLGVIPAFVLIVIIACLTDISVDFLMRYTNA-GETSTYAGVMRESFG 93 (435)
Q Consensus 16 ~~~~~~s~~~~~~~l~~~~iG~GiL~LP~-~~~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~-~~~~~y~~l~~~~~G 93 (435)
+-+|+.+.++.....+++++|+|++..|. +++++|. ..+...++++++.......+.|.... ....++.+.+++.+|
T Consensus 17 ~l~r~l~~~~~~~i~vG~~IGsGif~~~g~~~~~aGp-~~i~~~~i~~i~~~~~~~s~aEl~s~~~~~~~~~~ya~~~~g 95 (469)
T PRK11049 17 SLRRNLTNRHIQLIAIGGAIGTGLFMGSGKTISLAGP-SIIFVYMIIGFMLFFVMRAMGELLLSNLEYKSFSDFASDLLG 95 (469)
T ss_pred hhhccCcHHHHHHHHHhhHHHhHHHHHhhHHHhhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHhC
Confidence 35889999999999999999999998775 6778786 46778888888888888888886543 445567789999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCccccchhhhhhcCccccchHHHHHHHHHHHHhccccccccchh
Q 013866 94 RAGSVAVQLCVMITNLGCLIIFLIIIGDVLCGKQPEGSVHLGVLQEWFGFHWWNTRVFALLFVMVFVMLPLALFRRVGSL 173 (435)
Q Consensus 94 ~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~l 173 (435)
|..++++.+..++.............+.+++..+++ .........++..+..+.+.-.|..+++
T Consensus 96 ~~~gf~~gW~~~~~~~~~~~a~~~a~~~~~~~~~p~----------------~~~~~~~~~~~~~~~~iN~~g~~~~~~i 159 (469)
T PRK11049 96 PWAGYFTGWTYWFCWVVTGIADVVAITAYAQFWFPD----------------LSDWVASLAVVLLLLSLNLATVKMFGEM 159 (469)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----------------CcHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 999999999998776544444444455444322221 1111112222222223333333434444
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCC-----CCCCCCCCCc-ccchhhhhhhhhhhhhhhhcccchhhhhhc
Q 013866 174 RFSSAISVLLAVIFVAICSVMAIYAVWEG--KSK-----TPKLLPQLDN-HVSVFDLFTAVPVIVTAFTFHFNVHPIGFE 245 (435)
Q Consensus 174 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-----~~~~~~~~~~-~~~~~~~~~~~~~~~faf~~~~~~~~i~~~ 245 (435)
+.+...-.+..+. ..++..+.....+ +.+ ..+.+++.+. ..++.++..++....|+|.|.+.+....+|
T Consensus 160 ~~~~~~~kl~~l~---~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~af~G~e~~~~~a~E 236 (469)
T PRK11049 160 EFWFAMIKIVAIV---ALIVVGLVMVAMHFQSPTGVEASFAHLWNDGGMFPKGLSGFFAGFQIAVFAFVGIELVGTTAAE 236 (469)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHcCCCCCCCCCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhcHHHHHHHHHH
Confidence 3332222211111 1111111111111 000 0011111000 123456889999999999999999999999
Q ss_pred CCCCc-hhHHHHHHHHHHHHHHHHHHHhHHhHhcCCC-c-c--hhhhcCCCcCCcchhhhHHHHHHHHHHHHHHHHhhhh
Q 013866 246 FDKPS-DMITAVRISLVICAAIYFSVGLFGYLLFGES-I-M--SDILINFDQSSGSAISSLLNDLVRLSYALHLMLVFPM 320 (435)
Q Consensus 246 m~~p~-~~~~~~~~s~~~~~~~y~~~~~~gy~~fg~~-~-~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 320 (435)
+|||+ +.+|++..+.....+.|..........-+.+ . . ++....+.... .++...+..+...+..+.+...
T Consensus 237 ~knP~r~iPrai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~g----~~~~~~~~~~~~~~s~~~~~~~ 312 (469)
T PRK11049 237 TKDPEKSLPRAINSIPIRIIMFYVFALIVIMSVTPWSSVVPDKSPFVELFVLVG----LPAAASVINFVVLTSAASSANS 312 (469)
T ss_pred hcCHhhHHHHHHHHHHHHHHHHHHHHHHHHeeecCccccCccCCcHHHHHHHcC----ChhHHHHHHHHHHHHHHHHHHH
Confidence 99999 7999998777777777876654443221111 0 0 11111111000 0234445555566666665555
Q ss_pred hhhHHHHHHHHhh
Q 013866 321 LNFSLRANIDELL 333 (435)
Q Consensus 321 ~~~~~~~~~~~~~ 333 (435)
......+.+...-
T Consensus 313 ~~~~~sR~l~a~a 325 (469)
T PRK11049 313 GVFSTSRMLFGLA 325 (469)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555443
No 35
>PRK10580 proY putative proline-specific permease; Provisional
Probab=99.65 E-value=2.7e-12 Score=127.63 Aligned_cols=241 Identities=15% Similarity=0.137 Sum_probs=148.0
Q ss_pred CCCCCCchHHHHHHHHHHHHhhhhchHHHH-HHhhChHHHHHHHHHHHHHHHHHHHHHHHHhh-hcCCCCHHHHHHHHhC
Q 013866 16 KTEKRPSVSGAVFNVATSIIGAGIMSIPAT-IKVLGVIPAFVLIVIIACLTDISVDFLMRYTN-AGETSTYAGVMRESFG 93 (435)
Q Consensus 16 ~~~~~~s~~~~~~~l~~~~iG~GiL~LP~~-~~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~-~~~~~~y~~l~~~~~G 93 (435)
+.+|+.+.++.....+++++|+|++.+|.. .+.+|. ..++..++.+++.......+.|... .+......+.+++.+|
T Consensus 6 ~l~r~L~~~~~~~i~vg~~IG~Gif~~~g~~~~~aG~-~~~l~~~i~~i~~~~~a~~~aEl~s~~P~~Gg~y~y~~~~~G 84 (457)
T PRK10580 6 KLKRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGP-SVLLAYIIGGVAAYIIMRALGEMSVHNPAASSFSRYAQENLG 84 (457)
T ss_pred cccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHcC
Confidence 457889999999999999999999999876 556675 5788999999999999999999664 4556777778999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCccccchhhhhhcCccccchHHHHHHHHHHHHhccccccccchh
Q 013866 94 RAGSVAVQLCVMITNLGCLIIFLIIIGDVLCGKQPEGSVHLGVLQEWFGFHWWNTRVFALLFVMVFVMLPLALFRRVGSL 173 (435)
Q Consensus 94 ~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~l 173 (435)
|..++++.+...+.....+.......+..++..+++ . +...+.+.++.....+.+.-.|...++
T Consensus 85 ~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~--~~~~~~~~~~~l~~~ln~~gv~~~~~~ 148 (457)
T PRK10580 85 PLAGYITGWTYCFEILIVAIADVTAFGIYMGVWFPT--------------V--PHWIWVLSVVLIICAVNLMSVKVFGEL 148 (457)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--------------C--ChHHHHHHHHHHHHHHHHccchhHHHH
Confidence 999999999888766555555444455444322221 0 111111111111122222222333333
Q ss_pred hHHHHHHHHHHHHHHH-HHHHHHHHHHhcCC-CC-CCCCCCCCCc-ccchhhhhhhhhhhhhhhhcccchhhhhhcCCCC
Q 013866 174 RFSSAISVLLAVIFVA-ICSVMAIYAVWEGK-SK-TPKLLPQLDN-HVSVFDLFTAVPVIVTAFTFHFNVHPIGFEFDKP 249 (435)
Q Consensus 174 ~~~s~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~-~~~~~~~~~~-~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p 249 (435)
+.+...-.+..+...+ ..+........+++ .. ....+++.+. ..++.++..++....|+|.|.+......+|.|||
T Consensus 149 ~~~~~~~~~~~l~~~ii~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~fsf~G~e~~~~~a~E~knP 228 (457)
T PRK10580 149 EFWFSFFKVATIIIMIVAGIGIIIWGIGNGGQPTGIHNLWSNGGFFSNGWLGMVMSLQMVMFAYGGIEIIGITAGEAKDP 228 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccccCCCCCCCCcchHHHHHHHHHHHHHHhCHHHHHHHHHHhcCh
Confidence 3222221111111111 11001111101110 00 0111111111 1234567788899999999999999999999999
Q ss_pred c-hhHHHHHHHHHHHHHHHHHHHhH
Q 013866 250 S-DMITAVRISLVICAAIYFSVGLF 273 (435)
Q Consensus 250 ~-~~~~~~~~s~~~~~~~y~~~~~~ 273 (435)
+ +.+|++..+.....++|......
T Consensus 229 ~k~iPrAi~~~~~~~~~~y~~~~~~ 253 (457)
T PRK10580 229 EKSIPRAINSVPMRILVFYVGTLFV 253 (457)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9 69999998888888888776443
No 36
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=99.64 E-value=4.1e-13 Score=135.09 Aligned_cols=249 Identities=14% Similarity=0.142 Sum_probs=147.2
Q ss_pred CCCCCCchHHHHHHHHHHHHhhhhchHHHH-HHhhChH-HHHHHHHHHHHHHHHHHHHHHHHhh-hcCCCCHHHHHHHHh
Q 013866 16 KTEKRPSVSGAVFNVATSIIGAGIMSIPAT-IKVLGVI-PAFVLIVIIACLTDISVDFLMRYTN-AGETSTYAGVMRESF 92 (435)
Q Consensus 16 ~~~~~~s~~~~~~~l~~~~iG~GiL~LP~~-~~~~G~~-~g~i~l~~~~~~~~~s~~~l~~~~~-~~~~~~y~~l~~~~~ 92 (435)
+.+|+.+.++.+...+++++|+|++..|.. .+++|-. ..++.+++.+++.......+.|... .++.....+..++.+
T Consensus 39 ~l~r~l~~~~~~~l~vg~iiGsGif~~~~~~~~~~G~~g~~~~~~ii~~i~~~~~al~~aELas~~P~sGG~y~~~~~~~ 118 (501)
T TIGR00911 39 ALKKEITLLSGVGIIVGTIIGSGIFVSPKGVLKNAGSVGLALIMWAVCGIFSIVGALVYAELGTTIPKSGGEYNYILEVF 118 (501)
T ss_pred ccCccccHhHhhHhheeceEEeeEeecHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhhhHHhHh
Confidence 347889999999999999999999998876 5556642 2346677888888888888888654 445555667778899
Q ss_pred ChhHHHHHHHHHHHH-HHHHHHHHHHhhhccc-CCCCCCCccccchhhhhhcCccccchHHHHHHHHHHHHhcccccccc
Q 013866 93 GRAGSVAVQLCVMIT-NLGCLIIFLIIIGDVL-CGKQPEGSVHLGVLQEWFGFHWWNTRVFALLFVMVFVMLPLALFRRV 170 (435)
Q Consensus 93 G~~~~~~~~~~~~~~-~~g~~~~y~~~~~~~l-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~ 170 (435)
||+.+++..+..+.. ..+.+..+....++++ +.+.++. +...+......+.++..... ...+..
T Consensus 119 g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~-----------~~~~~~~~~i~~~~i~~~~~---ln~~Gv 184 (501)
T TIGR00911 119 GPLLAFLRLWIELLVIRPGSQAVNALNFAIYILTPVFPDC-----------EVPEWAIRLVAVLCVLLLTL---VNCLSV 184 (501)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----------CCchHHHHHHHHHHHHHHHH---HHHhhh
Confidence 999999887765432 2233444444445443 2122210 00001111111111111122 222333
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCC-cccchhhhhhhhhhhhhhhhcccchhhhhhcCCCC
Q 013866 171 GSLRFSSAISVLLAVIFVAICSVMAIYAVWEGKSKTPKLLPQLD-NHVSVFDLFTAVPVIVTAFTFHFNVHPIGFEFDKP 249 (435)
Q Consensus 171 ~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p 249 (435)
+...+++.+.....+..+++.++..+.....++.+..+.....+ ...+..++..++....|+|.|.+......+|+|||
T Consensus 185 k~~~~~~~i~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~a~~~~~~af~G~e~~~~~a~E~knP 264 (501)
T TIGR00911 185 KWATRVQDIFTACKLLALLLIIITGWVQLGKGGVESLNPKNAFEGTETSAGGIVLAFYSGIWAYGGWNYLNFVTEEVKNP 264 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCcccccCCCCCcHHHHHHHHHHHHHHHHhHHHHhhhHHHhcCc
Confidence 33333333333222222222222222222222211110000111 11335577788899999999999999999999999
Q ss_pred c-hhHHHHHHHHHHHHHHHHHHHhHHhHhc
Q 013866 250 S-DMITAVRISLVICAAIYFSVGLFGYLLF 278 (435)
Q Consensus 250 ~-~~~~~~~~s~~~~~~~y~~~~~~gy~~f 278 (435)
+ +.+|++..+..++.++|.+..+......
T Consensus 265 ~r~iPrAi~~s~~~v~~~Y~l~~~a~~~~~ 294 (501)
T TIGR00911 265 YRTLPIAIIISMPIVTFIYVLTNIAYFTVL 294 (501)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 8 7999999999999999999865554333
No 37
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=99.63 E-value=3.7e-12 Score=127.55 Aligned_cols=296 Identities=13% Similarity=0.071 Sum_probs=173.9
Q ss_pred CCCCchHHHHHHHHHHHHhhhhchHH-HHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHhhh-c-CCCCHHHHHHHHhCh
Q 013866 18 EKRPSVSGAVFNVATSIIGAGIMSIP-ATIKVLGVIPAFVLIVIIACLTDISVDFLMRYTNA-G-ETSTYAGVMRESFGR 94 (435)
Q Consensus 18 ~~~~s~~~~~~~l~~~~iG~GiL~LP-~~~~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~-~-~~~~y~~l~~~~~G~ 94 (435)
+|+.+.++.....++.++|+|++..| .+.+++|....+...++.+++.......+.|.... + ....|.+.+++.+|+
T Consensus 1 ~r~L~~~~~~~l~vg~~IGsGif~~~~~~~~~~Gp~~~i~~~~i~~~~~~~~a~~~aEl~s~~P~~gG~~~~~~~~~~g~ 80 (478)
T TIGR00913 1 KKSLKQRHIQMIALGGTIGTGLLVGSGTALATGGPAGLLIGYAIMGSIIYCVMQSLGEMATFYPVVSGSFATYASRFVDP 80 (478)
T ss_pred CCCCcHHHHHHHHHhccccchhhhcchhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHcCc
Confidence 47899999999999999999999766 55667775444777888999999999999996654 3 345788899999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCccccchhhhhhcCccccchHHHHHHHHHHHHhccccccccchhh
Q 013866 95 AGSVAVQLCVMITNLGCLIIFLIIIGDVLCGKQPEGSVHLGVLQEWFGFHWWNTRVFALLFVMVFVMLPLALFRRVGSLR 174 (435)
Q Consensus 95 ~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~l~ 174 (435)
+.++++.+.+++.....+.......++.+....++ .....+..++...+.++...-.|..++++
T Consensus 81 ~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~in~~gv~~~~~~~ 144 (478)
T TIGR00913 81 AFGFAVGWNYWLQWLIVLPLELVTASMTIQYWTDK----------------VNPAVWIAIFYVFIVIINLFGVKGYGEAE 144 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC----------------CCHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 99999999998887777677666666665422210 11111111111121222222233333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC----CCCC---CCCc---ccchhhhhhhhhhhhhhhhcccchhhhhh
Q 013866 175 FSSAISVLLAVIFVAICSVMAIYAVWEGKSKTP----KLLP---QLDN---HVSVFDLFTAVPVIVTAFTFHFNVHPIGF 244 (435)
Q Consensus 175 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~---~~~~---~~~~~~~~~~~~~~~faf~~~~~~~~i~~ 244 (435)
.......+..+...+ +..+.....+..+.. ..+. ...+ ...+.++..++....|+|.|.+......+
T Consensus 145 ~~~~~~ki~~l~~~i---i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~ 221 (478)
T TIGR00913 145 FWFSSIKILAIIGFI---ILSIILNCGGGPNHGYIGFRYWHDPGAFAGGTIGGRFKGVCSVFVTAAFSFGGTELVALTAG 221 (478)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHcCCCCCCCCcccccCCCCCCCCCCccchHHHHHHHHHHHHhhhccHHHHHHHHH
Confidence 222211111111111 111111111110100 0000 0111 11256778888899999999999999999
Q ss_pred cCCCCc-hhHHHHHHHHHHHHHHHHHHHhHHhHhcCCCcchhhhcCCC--cCCcchh--------hhHHHHHHHHHHHHH
Q 013866 245 EFDKPS-DMITAVRISLVICAAIYFSVGLFGYLLFGESIMSDILINFD--QSSGSAI--------SSLLNDLVRLSYALH 313 (435)
Q Consensus 245 ~m~~p~-~~~~~~~~s~~~~~~~y~~~~~~gy~~fg~~~~~~i~~~~~--~~~~~~~--------~~~~~~~~~~~~~~~ 313 (435)
|.|||+ +.+|++..+..++.++|....+......+.+. .++..+-. ...+.++ .++...+..+...+.
T Consensus 222 E~knP~r~iPrai~~~~~~~~~~Y~l~~~~~~~~~p~~~-~~l~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~s 300 (478)
T TIGR00913 222 EAANPRKSIPRAAKRTFWRILVFYILTLFLIGFLVPYND-PRLLSSSSSSDSAASPFVIAIQNHGIKVLPHIFNAVILIS 300 (478)
T ss_pred hhcChhhHHHHHHHHHHHHHHHHHHHHHHHheeeccCCC-hhhcccccCCCcCCCcHHHHHHHcCCchHhHHHHHHHHHH
Confidence 999998 79999999999999999987543322222111 01111100 0000000 023444555556666
Q ss_pred HHHhhhhhhhHHHHHHHHhh
Q 013866 314 LMLVFPMLNFSLRANIDELL 333 (435)
Q Consensus 314 ~~~~~p~~~~~~~~~~~~~~ 333 (435)
.+.+....+....+.+...-
T Consensus 301 ~~~~~~~~~~~~sR~l~a~a 320 (478)
T TIGR00913 301 VLSAANSSLYASSRTLYALA 320 (478)
T ss_pred HHHHHHhhHHHHHHHHHHHH
Confidence 66666666666666665543
No 38
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=99.62 E-value=5.4e-13 Score=134.86 Aligned_cols=364 Identities=12% Similarity=0.049 Sum_probs=201.2
Q ss_pred CCCCCchHHHHHHHHHHHHhhhhchHHHHH--HhhChHHHHHHHHHHHHHHHHHHHHHHHHhh-hcCCCCHHHHHHHHhC
Q 013866 17 TEKRPSVSGAVFNVATSIIGAGIMSIPATI--KVLGVIPAFVLIVIIACLTDISVDFLMRYTN-AGETSTYAGVMRESFG 93 (435)
Q Consensus 17 ~~~~~s~~~~~~~l~~~~iG~GiL~LP~~~--~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~-~~~~~~y~~l~~~~~G 93 (435)
-+|+.+.++.+...++.++|+|++.+|... ..+|.. .++.+++.++.+......+.|... .++..+....+++.+|
T Consensus 26 L~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp~-~~ls~liagv~~l~~al~yaElas~~P~sGg~Y~y~~~~~G 104 (557)
T TIGR00906 26 MKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPA-IVLSFLISGLAAVLSGFCYAEFGARVPKAGSAYLYSYVTVG 104 (557)
T ss_pred hhhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCcH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcceeeHHHHhC
Confidence 478899999999999999999999999654 346754 677888889999889999999654 4444454556788999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCcc-c-cchhhhhhcCcccc--chHHHHHHHHHHHHhccccccc
Q 013866 94 RAGSVAVQLCVMITNLGCLIIFLIIIGDVLCGKQPEGSV-H-LGVLQEWFGFHWWN--TRVFALLFVMVFVMLPLALFRR 169 (435)
Q Consensus 94 ~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~l~~~~~~-~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~pl~~~~~ 169 (435)
+..++++.+...+.....+.......++++.+++.+... . ..... .+..... .....+.++ +++-....+.
T Consensus 105 ~~~gfi~GW~~~l~~~~~~a~va~~~s~yl~~ll~~~~~~~~~~~~~--~~~~~l~~~~~~~a~~ii---~l~~~ln~~G 179 (557)
T TIGR00906 105 ELWAFITGWNLILEYVIGTAAVARSWSAYFDELLNKQIGQFRRTYFK--LNYDGLAEYPDFFAVCLI---LLLAVLLSFG 179 (557)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccc--ccCCcccccchHHHHHHH---HHHHHHHHhc
Confidence 999999999988876665555444444444333221000 0 00000 0000000 011111111 2222233445
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcc--cchhhhhhhhhhhhhhhhcccchhhhhhcCC
Q 013866 170 VGSLRFSSAISVLLAVIFVAICSVMAIYAVWEGKSKTPKLLPQLDNH--VSVFDLFTAVPVIVTAFTFHFNVHPIGFEFD 247 (435)
Q Consensus 170 ~~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~ 247 (435)
.+...+++.+.....+..+++.++....+...++..... ..+.+++ .++.+++.+.....|+|.|.+.+....+|.|
T Consensus 180 ik~s~~v~~i~~~iki~~l~~~iv~g~~~~~~~~~~~~~-~~~~~~f~p~g~~g~l~g~~~~~faf~Gfd~v~~~aeE~k 258 (557)
T TIGR00906 180 VKESAWVNKIFTAINILVLLFVIIAGFTKADVANWSITE-EKGAGGFMPYGFTGVLSGAATCFFAFIGFDAIATTGEEVK 258 (557)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhhHHHhhCCchhccccc-cccCCCCCCcchHHHHHHHHHHHHHHhhHHHHHHhHHhcc
Confidence 555555555444333322222222222211101111000 0000011 2345788889999999999999999999999
Q ss_pred CCc-hhHHHHHHHHHHHHHHHHHHHhHHhHhcCCC---cchhhhcCCCcCCcchhhhHHHHHHHHHHHHHHHHhhhhhhh
Q 013866 248 KPS-DMITAVRISLVICAAIYFSVGLFGYLLFGES---IMSDILINFDQSSGSAISSLLNDLVRLSYALHLMLVFPMLNF 323 (435)
Q Consensus 248 ~p~-~~~~~~~~s~~~~~~~y~~~~~~gy~~fg~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 323 (435)
||+ +.+|++..+..+++++|.++.+.-....+.+ .++++...+..... ++...+..+.....++.+....+.
T Consensus 259 nP~r~iP~aii~sl~i~~vlY~lv~~~l~~~vp~~~l~~~~p~~~a~~~~g~----~~~~~ii~~~~~~~~~~sl~~~~~ 334 (557)
T TIGR00906 259 NPQRAIPIGIVTSLLVCFVAYFLMSAALTLMMPYYLLDPDAPFPVAFEYVGW----GPAKYIVAVGALCGMSTSLLGGMF 334 (557)
T ss_pred CccccccHHHHHHHHHHHHHHHHHHHHHhccccHHHhCcCcHHHHHHHHcCc----hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999 6999999999999999999865544332211 11111111111110 244445555555566666666666
Q ss_pred HHHHHHHHhhccCCccc-----c-c-ccchhhhHHHHHHHHHHHHHhhcCCHHHHHHhhhhhhhhhHHHhhhhHHHHHhc
Q 013866 324 SLRANIDELLFSQKPLL-----A-K-DTKRFLSITLVLLVFSYTAAITIPDIWYFFQFLGSTSAVCLAFIFPGVIVLRDV 396 (435)
Q Consensus 324 ~~~~~~~~~~~~~~~~~-----~-~-~~~~~~~~~~~~~~~~~~~a~~~p~~~~~~~~~G~~~~~~~~~i~P~~~~~~~~ 396 (435)
...+.++..-.++.-+. + + +.+.+ ...+...++.+++.. .+++.+.++. ++ +..+.|.+++...+..+
T Consensus 335 ~~sRil~amarDGlLP~~fakv~~r~~tP~~--Ail~~~iv~~il~~~-~~~~~l~~l~-si-g~ll~y~lv~~~~l~lR 409 (557)
T TIGR00906 335 PLPRVIYAMARDGLLFKWLAQINSKTKTPIN--ATVVSGAIAALMAFL-FDLKALVDLL-SI-GTLLAYSLVAACVLILR 409 (557)
T ss_pred HHHHHHHHHHcCCCccHHHhccCCCCCCcHH--HHHHHHHHHHHHHHH-cCHHHHHHHH-HH-HHHHHHHHHHHHHHHhh
Confidence 66666665543222111 0 1 11111 122222333334433 3566555543 22 55678888877666654
No 39
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=99.62 E-value=1.4e-12 Score=129.22 Aligned_cols=234 Identities=15% Similarity=0.074 Sum_probs=150.8
Q ss_pred CCCCCCCchHHHHHHHHHHHHhhhhchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHh-hhcCCCCHHHHHHHHhC
Q 013866 15 SKTEKRPSVSGAVFNVATSIIGAGIMSIPATIKVLGVIPAFVLIVIIACLTDISVDFLMRYT-NAGETSTYAGVMRESFG 93 (435)
Q Consensus 15 ~~~~~~~s~~~~~~~l~~~~iG~GiL~LP~~~~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~-~~~~~~~y~~l~~~~~G 93 (435)
++.+|+.|.++.+...++.++|......+..+++.|+...++..++.+++.......+.|.. ..++.......+++.+|
T Consensus 3 ~~l~r~l~~~~~~~l~~~~~igg~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~a~~~aEl~s~~P~~Gg~y~~~~~~~G 82 (442)
T TIGR00908 3 RQLKKTLATWQLWGIGVGYVISGDYAGWNFGLAQGGWGGFVVATLLVATMYLTFCFSLAELSTMIPTAGGGYGFARRAFG 82 (442)
T ss_pred chhhccCCHHHHHHhHHHHHhhccchhHhhHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhC
Confidence 34578899999999999999985555678888999986666677777777777778888855 45566677788999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCccccchhhhhhcCccccchHHHHHHHHHHHHhccccccccchh
Q 013866 94 RAGSVAVQLCVMITNLGCLIIFLIIIGDVLCGKQPEGSVHLGVLQEWFGFHWWNTRVFALLFVMVFVMLPLALFRRVGSL 173 (435)
Q Consensus 94 ~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~l 173 (435)
|+.++++.+..++........+....+++++.++++. +.......++.....+ ..+..+..
T Consensus 83 ~~~gf~~gw~~~~~~~~~~~~~a~~~~~~l~~~~p~~----------------~~~~~~~~~~~~~~~l---n~~g~~~~ 143 (442)
T TIGR00908 83 PWGGFLAGTAILIEFAFAPPAIACFIGAYCESLFPVG----------------PGWLAALVFYIVFIGI---NILGVGEA 143 (442)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC----------------chhHHHHHHHHHHHHH---HHHHHHHH
Confidence 9999999999988877777778888887775443311 1111111111111222 22333333
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCC----CCCc--ccchhhhhhhhhhhhhhhhcccchhhhhhcCC
Q 013866 174 RFSSAISVLLAVIFVAICSVMAIYAVWEGKSKTPKLLP----QLDN--HVSVFDLFTAVPVIVTAFTFHFNVHPIGFEFD 247 (435)
Q Consensus 174 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~--~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~ 247 (435)
..++.....+.+..+++.++ .. ..+.+..+..+ +.+. ..++.++..++....|+|.|.+......+|+|
T Consensus 144 ~~i~~~~~~~~~~~l~i~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k 218 (442)
T TIGR00908 144 AKLEFVVTAVAIIALGVFIG---AM--VPHFDSANLFNGPQTGASSFLPGAYVGVFAAIPFAIWFFLAVEGVAMAAEETK 218 (442)
T ss_pred HhHHHHHHHHHHHHHHHHHH---HH--hccCCHHHhccCCccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33333222211111111111 10 11111111111 0011 12344677888889999999999999999999
Q ss_pred CCc-hhHHHHHHHHHHHHHHHHHHHh
Q 013866 248 KPS-DMITAVRISLVICAAIYFSVGL 272 (435)
Q Consensus 248 ~p~-~~~~~~~~s~~~~~~~y~~~~~ 272 (435)
||+ +.+|++..+..++..+|.....
T Consensus 219 ~P~r~iprai~~s~~~~~~~~~~~~~ 244 (442)
T TIGR00908 219 NPKRDIPRGLIGAILTLLALAAGILV 244 (442)
T ss_pred CcccccCHHHHHHHHHHHHHHHHHHH
Confidence 998 7999999999998888887643
No 40
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=99.62 E-value=2.4e-12 Score=127.18 Aligned_cols=298 Identities=15% Similarity=0.088 Sum_probs=181.9
Q ss_pred CchHHHHHHHHHHHHhhhhchHHHHHHhhChHHHHHHHHHHHHHH-HHHHHHHHHHhh-hcCCCCHHHHHHHHhChhHHH
Q 013866 21 PSVSGAVFNVATSIIGAGIMSIPATIKVLGVIPAFVLIVIIACLT-DISVDFLMRYTN-AGETSTYAGVMRESFGRAGSV 98 (435)
Q Consensus 21 ~s~~~~~~~l~~~~iG~GiL~LP~~~~~~G~~~g~i~l~~~~~~~-~~s~~~l~~~~~-~~~~~~y~~l~~~~~G~~~~~ 98 (435)
.|+++++...++.++|+|++..| ...+.|.. .++..++.+.+. ........|..+ .++.....+.+++.+||+.++
T Consensus 1 l~~~~~~~l~~~~~~g~gi~~~~-~~~~~G~~-~~~~~~i~~~~~~l~~a~~~~el~~~~p~~GG~y~~~~~~~g~~~g~ 78 (426)
T PF13520_consen 1 LGLFSAIALVIGSIIGSGIFFSP-AAASAGPS-AILAWIIAALLFFLPIALSYAELSSAYPSAGGIYVWVSRAFGPFWGF 78 (426)
T ss_dssp B-HHHHHHHHHHCHHTTTTTTHH-HHTCTGCH-HHHHHHHHHHHHHHHHHHHHHHHHTTTTSSTTHHHHHHHHH-HHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH-HHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHhccCCCcCeeeehhhhcccccchh
Confidence 47899999999999999999999 77777754 666666666666 577777788654 667777788899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCccccchhhhhhcCccccchHHHHHHHHHHHHhccccccccchhhHHHH
Q 013866 99 AVQLCVMITNLGCLIIFLIIIGDVLCGKQPEGSVHLGVLQEWFGFHWWNTRVFALLFVMVFVMLPLALFRRVGSLRFSSA 178 (435)
Q Consensus 99 ~~~~~~~~~~~g~~~~y~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~l~~~s~ 178 (435)
++.+...+.....+..+.....+.+...+.. ++.+.. + .. ..+....+...-....+..+..++++.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~-~--~~-~~i~~~~~~~~~~l~~~g~~~~~~~~~ 145 (426)
T PF13520_consen 79 IVGWLYWVAYILSLASVASSFASYLLSLFGP---------DLNPSP-W--PQ-FLIAIILILLFTLLNLLGIKLSGKIQN 145 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTTTG---------GGTCSH-H--HH-HHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred cccceeEEEeeccccccccchhhhhhhcccc---------cccccc-c--hh-eeeeecccccceEeeechhhhhhhhhh
Confidence 9999999998888888888888887655431 110100 1 11 111111122222233334444444444
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHhcCCCCC-CCCCCCCCcccchhhhhhhhhhhhhhhhcccchhhhhhcCCCCchhHHHH
Q 013866 179 ISVLLAV-IFVAICSVMAIYAVWEGKSKT-PKLLPQLDNHVSVFDLFTAVPVIVTAFTFHFNVHPIGFEFDKPSDMITAV 256 (435)
Q Consensus 179 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~ 256 (435)
....+.+ ..+++.++..+.....+..+. +...++.. ...+.+.+.++...+|+|.|.+..+...+|+|| ++.+|++
T Consensus 146 ~~~~~~i~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~-k~ip~ai 223 (426)
T PF13520_consen 146 ILTVIKIVIPLLVLIILGIVSFSFSGFNSLSFSLSTFF-PSGWPGFLAGFSVAFFAFSGFEAIASLAEENKN-KTIPRAI 223 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTCCHHH----SHSCSS-CSSSSHHHHHHHHHGGGGTTTTHHHHGGGGSSS-HHHHHHH
T ss_pred hhhhhhhhhhhhhheeEEEeeecccccccccccccccC-CccccchhhHHHHHHhhcccccccccccccccc-hhheeec
Confidence 4433333 122222222222211111110 00011111 123335788899999999999999999999998 8999999
Q ss_pred HHHHHHHHHHHHHHHhHHhHhcCCCcchhhhcCCC----cCCcchhhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHh
Q 013866 257 RISLVICAAIYFSVGLFGYLLFGESIMSDILINFD----QSSGSAISSLLNDLVRLSYALHLMLVFPMLNFSLRANIDEL 332 (435)
Q Consensus 257 ~~s~~~~~~~y~~~~~~gy~~fg~~~~~~i~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 332 (435)
..+..++.++|...........+++..+. ..+.+ .-.+...+++...+..+...+..+.+.........+.++..
T Consensus 224 ~~~~~~~~i~y~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~~ 302 (426)
T PF13520_consen 224 IISIIIVAIIYILFSIALLGALPDDELAN-SSNSPSPFAVLASAVGGSWLAIIVSIAAILSLFGSINAFIFGASRLLYAM 302 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSTHCHHHT-TTCHHCHHHHHHHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHhhhhheeeecccchhhhc-ccccccccchhhccccccccccccccccccccccccchhhcchhhccccc
Confidence 99999999999998776666555422110 01100 00000011345556666777777777777777777777766
Q ss_pred hccC
Q 013866 333 LFSQ 336 (435)
Q Consensus 333 ~~~~ 336 (435)
..++
T Consensus 303 a~d~ 306 (426)
T PF13520_consen 303 ARDG 306 (426)
T ss_dssp HHTT
T ss_pred cccc
Confidence 5443
No 41
>TIGR00930 2a30 K-Cl cotransporter.
Probab=99.60 E-value=8.5e-13 Score=139.59 Aligned_cols=246 Identities=11% Similarity=0.119 Sum_probs=157.1
Q ss_pred CCCCCCchHHHHHHH-HHHHHhhhhc-hHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHhhh--cCCCCHHHHHHHH
Q 013866 16 KTEKRPSVSGAVFNV-ATSIIGAGIM-SIPATIKVLGVIPAFVLIVIIACLTDISVDFLMRYTNA--GETSTYAGVMRES 91 (435)
Q Consensus 16 ~~~~~~s~~~~~~~l-~~~~iG~GiL-~LP~~~~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~--~~~~~y~~l~~~~ 91 (435)
+++++.++++.++.- +.+++|+|++ .+++.+.++|...+++.++++++++..+...+.+.... .+...-..+.++.
T Consensus 73 ~~~~~lG~~~GV~~~~~~nIiGv~iFlr~~~Vvg~aG~~~sll~~~la~~vtlltaLS~seiaTng~p~aGG~Y~yisra 152 (953)
T TIGR00930 73 AGAVKFGWVMGVLVPCLLNIWGVILFLRLSWIVGQAGIGLSLLIILLCCCVTTITGLSMSAIATNGVVKGGGAYYLISRS 152 (953)
T ss_pred CCCcccceeEeeeHhhhHhHheeeeeeeHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Confidence 346788999999998 9999999996 57788889998889999999999999999999996543 3444344567999
Q ss_pred hChhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCccccchhhhhhcCccccchHHHHHHHHHHHHhccccccccc
Q 013866 92 FGRAGSVAVQLCVMITNLGCLIIFLIIIGDVLCGKQPEGSVHLGVLQEWFGFHWWNTRVFALLFVMVFVMLPLALFRRVG 171 (435)
Q Consensus 92 ~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~ 171 (435)
+|+..+..+.+..++.+..++..|....++++..+++..... . ......+.+.+..+++.++.++.+.-.|...
T Consensus 153 lGp~~Gf~iG~~~~la~~va~A~~~~Gf~eyl~~lf~~~~~~--~----~~~~~~~~~iia~i~l~ll~~In~~Gvk~~a 226 (953)
T TIGR00930 153 LGPEFGGSIGLIFAFANAVAVAMYVVGFAETVLDLLRENGSK--I----MVDPINDIRIYGTVTVVVLLGISFAGMEWEN 226 (953)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc--c----ccCccccchHHHHHHHHHHHHHHHhhHHHHH
Confidence 999999999999998888888889888888876655321000 0 0000011222333322222333333333333
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC---------CCCCCC-Ccccch-hhhhhhhhhhhhhhhcccchh
Q 013866 172 SLRFSSAISVLLAVIFVAICSVMAIYAVWEGKSKTP---------KLLPQL-DNHVSV-FDLFTAVPVIVTAFTFHFNVH 240 (435)
Q Consensus 172 ~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~-~~~~~~-~~~~~~~~~~~faf~~~~~~~ 240 (435)
+++.+..+..+.. ++..+ +..+.....+.. ...++. +...+. .+++..++++.+||.|.....
T Consensus 227 k~q~vl~vi~ll~---ll~~i---ig~~~~~~~~~~~g~~~~~~~~f~~n~~p~~~~~~~~f~~~~ai~F~A~tGi~aga 300 (953)
T TIGR00930 227 KAQVLFLVIVLLS---ILNIF---VGTIIPAFDKPAKGFFGLGNEIFSENFIPGIPGPEGGFFSLFGIFFPSVTGILAGA 300 (953)
T ss_pred HHHHHHHHHHHHH---HHHHH---heeeecCCCCCccceeeccchhhhhccCCCCCCcccHHHHHHHHHHHHHHHHHHHH
Confidence 3333222222111 11111 100010000000 000000 011111 236677788888999999999
Q ss_pred hhhhcCCCCc-hhHHHHHHHHHHHHHHHHHHHhH
Q 013866 241 PIGFEFDKPS-DMITAVRISLVICAAIYFSVGLF 273 (435)
Q Consensus 241 ~i~~~m~~p~-~~~~~~~~s~~~~~~~y~~~~~~ 273 (435)
.+.+|+|||+ ++++++..+..+++++|+++.++
T Consensus 301 n~sgElKnP~r~IPratl~ai~i~~vlYllv~~~ 334 (953)
T TIGR00930 301 NISGDLKDPQKAIPKGTLLAILTTTVVYLGSVVL 334 (953)
T ss_pred HHHHhccChhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 79999999999999999998653
No 42
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=99.54 E-value=4e-11 Score=118.73 Aligned_cols=338 Identities=12% Similarity=0.094 Sum_probs=192.2
Q ss_pred HHHHHHhhhhchHHH-HHHhhChHHHHHHHHHHHHHHHHHHHHHHHHh-hhcCCCCHHHHHHHHhChhHHHHHHHHHHHH
Q 013866 30 VATSIIGAGIMSIPA-TIKVLGVIPAFVLIVIIACLTDISVDFLMRYT-NAGETSTYAGVMRESFGRAGSVAVQLCVMIT 107 (435)
Q Consensus 30 l~~~~iG~GiL~LP~-~~~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~-~~~~~~~y~~l~~~~~G~~~~~~~~~~~~~~ 107 (435)
.+++++|+|++..|. +.+++|. ..++..++.+++.......+.|.. ..++.....+.+++.+||+.++++.+..++.
T Consensus 3 ~ig~~IGsGif~~~g~~~~~aG~-~~ll~~~i~gi~~~~~al~~aEL~s~~P~~Gg~y~y~~~~~G~~~gf~~gw~~~~~ 81 (446)
T PRK10197 3 SIAGVIGASLFVGSSVAIAEAGP-AVLLAYLFAGLLVVMIMRMLAEMAVATPDTGSFSTYADKAIGRWAGYTIGWLYWWF 81 (446)
T ss_pred eecchhHhHHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHcChHHHHHHHHHHHHH
Confidence 468899999998887 6778885 588999999999999999999965 4566778888899999999999999999887
Q ss_pred HHHHHHHHHHhhhcccCCCCCCCccccchhhhhhcCccccchHHHHHHHHHHHHhccccccccchhhHHHHHHHHHHHHH
Q 013866 108 NLGCLIIFLIIIGDVLCGKQPEGSVHLGVLQEWFGFHWWNTRVFALLFVMVFVMLPLALFRRVGSLRFSSAISVLLAVIF 187 (435)
Q Consensus 108 ~~g~~~~y~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~l~~~s~~~~~~~~~~ 187 (435)
....+.......+..++...+ . .+...+...++.....+.+.-.|..++++.+..+..+..+..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~--------------~--~~~~~~~~~~l~~~~~lN~~gv~~~~~i~~~~~~~ki~~li~ 145 (446)
T PRK10197 82 WVLVIPLEANIAAMILHSWVP--------------G--IPIWLFSLVITLALTGSNLLSVKNYGEFEFWLALCKVIAILA 145 (446)
T ss_pred HHHHHHHHHHHHHHHHHhccc--------------c--CcHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHH
Confidence 665555444444433322111 0 111111222222222223333344444443333222211111
Q ss_pred HHHHHHHHHHHHhcCCCCC--C----CCCCCCC-cccchhhhhhhhhhhhhhhhcccchhhhhhcCCCCc-hhHHHHHHH
Q 013866 188 VAICSVMAIYAVWEGKSKT--P----KLLPQLD-NHVSVFDLFTAVPVIVTAFTFHFNVHPIGFEFDKPS-DMITAVRIS 259 (435)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~--~----~~~~~~~-~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~-~~~~~~~~s 259 (435)
+ ++..+.. ..+..+. . +.++..+ ....+.++..++....|+|.|.+.+....+|+|||+ +.+|++..+
T Consensus 146 ~---ii~~~~~-~~g~~~~~~~~~~~~~~~~~~~~p~g~~~~~~a~~~~~faf~G~e~~~~~a~E~knP~r~iPrai~~~ 221 (446)
T PRK10197 146 F---IFLGAVA-ISGFYPYAEVSGISRLWDSGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTPEKHIVRATNSV 221 (446)
T ss_pred H---HHHHHHH-hcCCCCCCCCCcchhcCCCCCCCcccHHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhhhHHHHHHHH
Confidence 1 1111111 1121110 0 1111000 013456888999999999999999999999999999 799999999
Q ss_pred HHHHHHHHHHHHhHHhHhcCCC-cchh-------hhcCCCcCCcchhhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Q 013866 260 LVICAAIYFSVGLFGYLLFGES-IMSD-------ILINFDQSSGSAISSLLNDLVRLSYALHLMLVFPMLNFSLRANIDE 331 (435)
Q Consensus 260 ~~~~~~~y~~~~~~gy~~fg~~-~~~~-------i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 331 (435)
...+.++|+...+........+ .+.+ ..+... .++...+.+....+..+.+..-.++...+.++.
T Consensus 222 ~~~i~i~Yil~~~~~~~~~p~~~~~~~~~~~~~~~~~~~g-------~~~~~~ii~~~i~~~~~~~~n~~~~~~sR~l~a 294 (446)
T PRK10197 222 IWRISIFYLCSIFVVVALIPWNMPGLKAVGSYRSVLELLN-------IPHAKLIMDCVILLSVTSCLNSALYTASRMLYS 294 (446)
T ss_pred HHHHHHHHHHHHHHHheecCcCcccccccCcHHHHHHHcC-------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998655533322211 1110 111111 123455666667777777777777777777776
Q ss_pred hhccCCccc------ccccchhh-hHHHHHHHHHHHHHhhcC--CHHHHHHhhhhhhhhhHHHhhhhHHHHHhcC
Q 013866 332 LLFSQKPLL------AKDTKRFL-SITLVLLVFSYTAAITIP--DIWYFFQFLGSTSAVCLAFIFPGVIVLRDVH 397 (435)
Q Consensus 332 ~~~~~~~~~------~~~~~~~~-~~~~~~~~~~~~~a~~~p--~~~~~~~~~G~~~~~~~~~i~P~~~~~~~~~ 397 (435)
.-.++.-++ +.+.+.+. .....+.....+.....| .++.++++.+... .+.|+++++-+++.+|
T Consensus 295 ~ardg~lP~~~~~~~~~~~P~~Ail~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~--li~y~~~~~a~i~lr~ 367 (446)
T PRK10197 295 LSRRGDAPAVMGKINRSKTPYVAVLLSTGAAFLTVVVNYYAPAKVFKFLIDSSGAIA--LLVYLVIAVSQLRMRK 367 (446)
T ss_pred HHcCCCcCHHHHhhCcCCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 653322211 01112221 111111111111211222 3566676655553 3677777777776543
No 43
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=99.53 E-value=2.5e-11 Score=116.82 Aligned_cols=358 Identities=12% Similarity=0.085 Sum_probs=241.6
Q ss_pred CCCCCchHHHHHHHHHHHHhhhhc-hHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHhhh-cCCCCHHHHHHHHhCh
Q 013866 17 TEKRPSVSGAVFNVATSIIGAGIM-SIPATIKVLGVIPAFVLIVIIACLTDISVDFLMRYTNA-GETSTYAGVMRESFGR 94 (435)
Q Consensus 17 ~~~~~s~~~~~~~l~~~~iG~GiL-~LP~~~~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~-~~~~~y~~l~~~~~G~ 94 (435)
-+|+...+...+.-++..||+|.+ +.-.+++++|....++..++.|.+.++.+..+.|.+.. +...++.+.+.+..++
T Consensus 42 lkR~LK~RHl~MIAiGG~IGTGLfvgsG~~l~~aGP~g~li~y~i~G~~vy~vm~sLGEma~~~P~sGsF~~ya~rfvdp 121 (541)
T COG0833 42 LKRSLKSRHLQMIAIGGAIGTGLFVGSGKALSQAGPAGLLIAYLIIGIMVYFVMQSLGELAVFYPVSGSFSTYATRFVDP 121 (541)
T ss_pred hhhhhhHHHHHHHHhccccccceeeecchhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhhhhhhhcCc
Confidence 368889999999999999999985 78899999999999999999999999999999997654 4455699999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCccccchhhhhhcCccccchHHHHHHHHHHHHhccccccccchhh
Q 013866 95 AGSVAVQLCVMITNLGCLIIFLIIIGDVLCGKQPEGSVHLGVLQEWFGFHWWNTRVFALLFVMVFVMLPLALFRRVGSLR 174 (435)
Q Consensus 95 ~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~l~ 174 (435)
-.++.+.+.+++.-..++..-+...+..+ +.|.+.. .+...+..++.+++.++.+.-.|...+..
T Consensus 122 a~GFa~gWnYw~~w~v~~~~El~aa~~vi--------------~yW~p~~-v~~~~w~~iF~~~i~~iN~~~Vk~fGE~E 186 (541)
T COG0833 122 AFGFALGWNYWLNWAVTLPLELTAASLVI--------------QYWFPDT-VPPWIWIAIFLVLIFLLNLFGVKGFGETE 186 (541)
T ss_pred hHHHHHHHHHHHHHHHHhhHHHHHHHHhh--------------hhhcCCC-CChHHHHHHHHHHHHHHHHhcccccceeh
Confidence 99999999999988877777777777776 4444222 34455666667777788888899998888
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCCCCCCCCC-cccchhhhhhhhhhhhhhhhcccchhhhhhcCCCCc-
Q 013866 175 -FSSAISVLLAVIFVAICSVMAIYAVWEGK-SKTPKLLPQLD-NHVSVFDLFTAVPVIVTAFTFHFNVHPIGFEFDKPS- 250 (435)
Q Consensus 175 -~~s~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~- 250 (435)
+.|.+-++..+.+.++.++. +.....++ .-..+.+.+.. -.+++.++...+-+..|||.|.+.+---..|-+||+
T Consensus 187 fw~s~iKV~~ii~Fii~gii~-~~Gg~~~~~~ig~~yw~~pg~F~~gf~g~~~v~v~a~Fsf~GtElvgiaAgEs~nP~K 265 (541)
T COG0833 187 FWFSSIKVLTIIGFIILGIII-ICGGGPTHGYIGFNYWHDPGAFAGGFKGFCSVFVIAAFSFSGTELVGLAAGESENPRK 265 (541)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-hcCCCCCCCCcceeeecCCCCCCcchHHHHHHHhhheeeeeceeeeeeeecccCCchh
Confidence 45556665444444443332 22211110 00011111111 124577888999999999999999999999999998
Q ss_pred hhHHHHHHHHHHHHHHHHHHH-hHHhH-hcCC----------CcchhhhcCCCcCCcchhhhHHHHHHHHHHHHHHHHhh
Q 013866 251 DMITAVRISLVICAAIYFSVG-LFGYL-LFGE----------SIMSDILINFDQSSGSAISSLLNDLVRLSYALHLMLVF 318 (435)
Q Consensus 251 ~~~~~~~~s~~~~~~~y~~~~-~~gy~-~fg~----------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (435)
..||++.-.+--..++|+..- +.|.+ .|.| ...++....+.+..- .....+.|..+.+++++.-
T Consensus 266 ~iPkAik~vfwRIl~FYi~si~~ig~lvPy~dp~Ll~~~~~~~~~SPFvia~~~~Gi----~~~~~imNaVIL~svlSa~ 341 (541)
T COG0833 266 SIPKAIKQVFWRILLFYILSIFVIGLLVPYNDPRLLGNSSSGVAASPFVIAIKNAGI----PVAASIMNAVILTSVLSAA 341 (541)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHheEEccCCCcccccCCcCCccCCChhHhHHhcCC----ccchHHHHHHHHHHHHHHh
Confidence 788999888888888887732 22322 3333 112233333333321 3567788899999999999
Q ss_pred hhhhhHHHHHHHHhhccCCcccc----ccc--c-hhhhHHHHHHHHHHHHHhhcC--CHHHHHHhhhhhhhhhHHHhhhh
Q 013866 319 PMLNFSLRANIDELLFSQKPLLA----KDT--K-RFLSITLVLLVFSYTAAITIP--DIWYFFQFLGSTSAVCLAFIFPG 389 (435)
Q Consensus 319 p~~~~~~~~~~~~~~~~~~~~~~----~~~--~-~~~~~~~~~~~~~~~~a~~~p--~~~~~~~~~G~~~~~~~~~i~P~ 389 (435)
.-.++...+.+..+...++.+.. .++ + .-+..+.++-+++++.+..-. -++-++++.|.... +.++-=+
T Consensus 342 NS~lYasSR~L~sLA~~g~APk~f~~~~r~GvP~~al~vt~~fg~lafl~~~~~~~~vf~wL~~isg~s~~--i~W~~I~ 419 (541)
T COG0833 342 NSGLYASSRMLYSLAKQGKAPKIFAKVDRRGVPLVALLVTLLFGLLAFLNSSFKETTVFNWLLNISGLSGF--IAWGSIC 419 (541)
T ss_pred hccchHHHHHHHHHHhcCCCchHHHhhCCCCCchHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHH--HHHHHHH
Confidence 99999999999988755443321 111 1 112333333334433333322 24466666665433 3444446
Q ss_pred HHHHHhc
Q 013866 390 VIVLRDV 396 (435)
Q Consensus 390 ~~~~~~~ 396 (435)
+-|++-|
T Consensus 420 ~shirFR 426 (541)
T COG0833 420 LSHIRFR 426 (541)
T ss_pred HHHHHHH
Confidence 6666643
No 44
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=99.52 E-value=5.1e-12 Score=119.62 Aligned_cols=289 Identities=12% Similarity=0.146 Sum_probs=203.3
Q ss_pred CCchHHHHHHHHHHHHhhhhchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHhChhHHHH
Q 013866 20 RPSVSGAVFNVATSIIGAGIMSIPATIKVLGVIPAFVLIVIIACLTDISVDFLMRYTNAGETSTYAGVMRESFGRAGSVA 99 (435)
Q Consensus 20 ~~s~~~~~~~l~~~~iG~GiL~LP~~~~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~y~~l~~~~~G~~~~~~ 99 (435)
++|.+|....+...++|+|++.+|....+.+ ..+++..++.+.......++..+..++.+.++..|+.++.+||+.+.+
T Consensus 1 kIS~~Q~~~l~~~~~~g~~~l~~p~~l~~~~-~d~Wi~~ll~~~~~l~~~~l~~~l~~~~p~~~l~~~~~~~~Gk~lg~i 79 (320)
T PF03845_consen 1 KISPRQLFFLLISSIIGTGILFLPAILAEQA-GDAWISVLLGGLIGLLLALLIYYLLKRFPGKTLVEISEKLFGKWLGKI 79 (320)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCcHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhCcHHHHH
Confidence 5789999999999999999999999977655 267788888888888888899998888899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccCCCCCCCccccchhhhhhcCccccchHHHHHHHHHHHHhccccccccchhhHHHHH
Q 013866 100 VQLCVMITNLGCLIIFLIIIGDVLCGKQPEGSVHLGVLQEWFGFHWWNTRVFALLFVMVFVMLPLALFRRVGSLRFSSAI 179 (435)
Q Consensus 100 ~~~~~~~~~~g~~~~y~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~l~~~s~~ 179 (435)
..+...++.+..........+|.++... .+....+++....++..-....+.++.+.+.+.+
T Consensus 80 i~~~~~l~~l~~~~~~lr~~~~~i~~~~------------------lp~TP~~~i~~~~ll~~~y~a~~G~e~i~R~~~~ 141 (320)
T PF03845_consen 80 INLLYILYFLLISALVLREFSEFIKTYL------------------LPETPIWVIILLFLLVAAYAARKGIEVIARVAEI 141 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh------------------cCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 9999999988888888888887774321 1111122333333344444555667776664444
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcccchhhhhhhhhhhhhhhhcccchhhhhhcCCCCchhHHHHHHH
Q 013866 180 SVLLAVIFVAICSVMAIYAVWEGKSKTPKLLPQLDNHVSVFDLFTAVPVIVTAFTFHFNVHPIGFEFDKPSDMITAVRIS 259 (435)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~s 259 (435)
-....+...+... ....++.+..+..|-.+ .++.++..+.....+.|.+......+....|+|+|.+|....+
T Consensus 142 ~~~~~~i~~~~i~-----~~~~~~~~~~~l~P~~~--~g~~~i~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~k~~~~~ 214 (320)
T PF03845_consen 142 LFPIFLILLLLIL-----LLSIPNIDWDNLLPVLE--SGIKPILKGSLVISFPFGGIEILLFLFPFVKDKKKLKKSLLIA 214 (320)
T ss_pred HHHHHHHHHHHHH-----HHhcccCCHHHeeCccc--CChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 4332222222111 12224445555566433 5667888888888899999888889999999999999999999
Q ss_pred HHHHHHHHHHHHhHHhHhcCCCcchhhh---cCCCcCCcc-hhhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhc
Q 013866 260 LVICAAIYFSVGLFGYLLFGESIMSDIL---INFDQSSGS-AISSLLNDLVRLSYALHLMLVFPMLNFSLRANIDELLF 334 (435)
Q Consensus 260 ~~~~~~~y~~~~~~gy~~fg~~~~~~i~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 334 (435)
...+..+|...-+.....||.+..++.. .+..+.-+. ..-+.+..+.-..+....+.......+...+.+.+.+.
T Consensus 215 ~~~~~~~~~~~~~~~i~vfG~~~~~~~~~P~~~~~~~i~i~~fieRld~~~i~~w~~~~~~~~~~~~~~~~~~~~~~f~ 293 (320)
T PF03845_consen 215 ILISGLFLLFIIFITIGVFGPELAKKLTYPVLELARSIEIGDFIERLDSIFILIWIIGIFIKISLYLYAASEGLSQLFK 293 (320)
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHhceecHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999888889999864332210 000000000 01233444555566677777888888888888887663
No 45
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=99.45 E-value=4.5e-10 Score=112.35 Aligned_cols=302 Identities=14% Similarity=0.101 Sum_probs=181.0
Q ss_pred CCCCCCCchHH-HHHHHHHHHHhhhhchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHhh-hcCCCCHHHHHHHHh
Q 013866 15 SKTEKRPSVSG-AVFNVATSIIGAGIMSIPATIKVLGVIPAFVLIVIIACLTDISVDFLMRYTN-AGETSTYAGVMRESF 92 (435)
Q Consensus 15 ~~~~~~~s~~~-~~~~l~~~~iG~GiL~LP~~~~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~-~~~~~~y~~l~~~~~ 92 (435)
++.+|+.+.++ ......+.++|.|++.+|......+ ....+.+++.+++.......+.|..+ .++...+.+.+++.+
T Consensus 8 ~~~~~~l~~~~~~~~~~~~~~~~~gif~~~~~~~~~~-~~~~~~~li~~~~~~~~a~~~~el~~~~p~~GG~y~~~~~~~ 86 (466)
T COG0531 8 SELKKKLGLFDLLTALGVGSMIGSGIFALPGSAAGLA-PAAILAWLIAGIIILFLALSYAELSSAIPSAGGAYAYAKRAL 86 (466)
T ss_pred hhcCCCcchHHHHHHHHHHhhHhhhhHhhhhhHHHhc-hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeeeehhhhc
Confidence 34567777777 8999999999999999998887665 33333366666777666777777554 455666778899999
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCccccchhhhhhcCccccchHHHHHHHHHHHHhccccccccch
Q 013866 93 GRAGSVAVQLCVMITNLGCLIIFLIIIGDVLCGKQPEGSVHLGVLQEWFGFHWWNTRVFALLFVMVFVMLPLALFRRVGS 172 (435)
Q Consensus 93 G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~ 172 (435)
||+.++.+.+..++.............++.+..+++... ...... -....+......++-+...+..+.
T Consensus 87 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~----~~~~~~~~~~~~~~~~ln~~G~~~ 155 (466)
T COG0531 87 GPRLGFLAGWLYLLAYVIALAAIAIGAASYLSYLFPGPG-------LLSIGP----LLIILIALALIALLTLLNLRGIKA 155 (466)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcch-------hhcCCc----hHHHHHHHHHHHHHHHHHHhhHHH
Confidence 999999999999998888888887777776655444210 000000 011111222222222333444444
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCC-cccchhhhhhhhhhhhhhhhcccchhhhhhcCCCCc-
Q 013866 173 LRFSSAISVLLAVIFVAICSVMAIYAVWEGKSKTPKLLPQLD-NHVSVFDLFTAVPVIVTAFTFHFNVHPIGFEFDKPS- 250 (435)
Q Consensus 173 l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~- 250 (435)
...+..+..+..+...++..+..... ...+......... ....+..+..++....++|.|.+...+..+|+|||+
T Consensus 156 ~~~~~~~~~~~~i~~~i~~~i~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~knp~r 232 (466)
T COG0531 156 SAKINSIITILKIIILLIFIILGLFA---FGFSNGNLFAPFNPGGGSFGGILAAILLAFFAFTGFEAIATLAEEVKNPKR 232 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---hCccccccCCCcccccchHHHHHHHHHHHHHHhhcHHHHHHHHHHhcCccc
Confidence 44444444433333333222222222 2211111111111 122344688888999999999999999999999997
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhHHhHhcCCC-cchhhhcCCCcCC--cchhhhHHHHHHHHHHHHHHHHhhhhhhhHHHH
Q 013866 251 DMITAVRISLVICAAIYFSVGLFGYLLFGES-IMSDILINFDQSS--GSAISSLLNDLVRLSYALHLMLVFPMLNFSLRA 327 (435)
Q Consensus 251 ~~~~~~~~s~~~~~~~y~~~~~~gy~~fg~~-~~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 327 (435)
+.+|++..+...+.++|....+......+++ .... ..+.+-.. ....+.+...+..+...+..+.+.........+
T Consensus 233 ~ip~aii~~~~~~~~~y~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~sR 311 (466)
T COG0531 233 TIPRAIILSLLIVLILYILGALVIVGVLPAGDLAAS-APSAPLALAALFGGGNWGAIIIAILALLSLFGSLLAWILAVSR 311 (466)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHhCccHHHHhcc-CCCccHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999987777766642 1111 00000000 000012445555566666666665555555555
Q ss_pred HHHHh
Q 013866 328 NIDEL 332 (435)
Q Consensus 328 ~~~~~ 332 (435)
.....
T Consensus 312 ~~~~~ 316 (466)
T COG0531 312 VLYAM 316 (466)
T ss_pred HHHHH
Confidence 54444
No 46
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=99.39 E-value=4.1e-09 Score=105.39 Aligned_cols=260 Identities=8% Similarity=-0.080 Sum_probs=145.2
Q ss_pred CCCCCCCCchHHHHHHHHHHH-HhhhhchHHHH-HHhhChHHHHHHHHHHHHHHHHHHHHHHHHhh-hcCCCCHHHHHHH
Q 013866 14 SSKTEKRPSVSGAVFNVATSI-IGAGIMSIPAT-IKVLGVIPAFVLIVIIACLTDISVDFLMRYTN-AGETSTYAGVMRE 90 (435)
Q Consensus 14 ~~~~~~~~s~~~~~~~l~~~~-iG~GiL~LP~~-~~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~-~~~~~~y~~l~~~ 90 (435)
+++-+|+.|.++.+..-++.+ ++.|+...+.. ..++|- ..+..+++.++........+.|... .+......+.+++
T Consensus 8 ~~~L~R~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~Gp-~~~~~~li~~i~~l~~als~aEL~s~~P~aGG~Y~~~~~ 86 (475)
T TIGR03428 8 QPQLHRKLGRYASFAAGFSFVSILTTIFQLFGFGYGFGGP-AFFWTWPVVFVGQLLVALNFAELAARYPISGAIYQWSRR 86 (475)
T ss_pred ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHH
Confidence 444588899999999999885 89999877655 556665 5677888888888888888999654 4555666677899
Q ss_pred HhChhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCccccchhhhhhcCccccchHHHHHHHHHHHHhcccccccc
Q 013866 91 SFGRAGSVAVQLCVMITNLGCLIIFLIIIGDVLCGKQPEGSVHLGVLQEWFGFHWWNTRVFALLFVMVFVMLPLALFRRV 170 (435)
Q Consensus 91 ~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~ 170 (435)
.+||+.++++.+...+................+..+.+..... +..+++..+.. ....+.+ ....+.+.-....+..
T Consensus 87 ~~g~~~gf~~gW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~in~~g~ 163 (475)
T TIGR03428 87 MGGEVIGWFAGWFMIIAQIVTAAAAAIALQVVLPNIWSGFQII-GEDPTLTSPSG-AANAVLL-GSVLLVLTTVINCIGV 163 (475)
T ss_pred HcCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc-ccCccccCCCc-hHHHHHH-HHHHHHHHHHHHHhhh
Confidence 9999999999998887655444433333333332221100000 00000000000 0011111 1111112212222333
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCC-C-Ccccc-hhhhhhhhhhhhhhhhcccchhhhhhcCC
Q 013866 171 GSLRFSSAISVLLAVIFVAICSVMAIYAVWEGKSKTPKLLPQ-L-DNHVS-VFDLFTAVPVIVTAFTFHFNVHPIGFEFD 247 (435)
Q Consensus 171 ~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~-~~~~~~~~~~~~faf~~~~~~~~i~~~m~ 247 (435)
+...++..+...+.+..+++.++.... ..+.+....... . +..++ ...+..+.....|+|.|.+......+|+|
T Consensus 164 k~~~~i~~~~~~~~i~~l~~iii~~~~---~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~aeE~k 240 (475)
T TIGR03428 164 EWMSRVNTIGVTCEIVGVLAVIGVLFT---HAQRGPGVVFDTSVTGASPGYYGAFLVSGLMAAYVMVGFGSAGELSEETK 240 (475)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCCCcceeeecCCCCCCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhc
Confidence 334444433332222222211111111 111111000110 0 01112 23345566677899999999999999999
Q ss_pred CCc-hhHHHHHHHHHHHHHHHHHHHhHHhHhcCC
Q 013866 248 KPS-DMITAVRISLVICAAIYFSVGLFGYLLFGE 280 (435)
Q Consensus 248 ~p~-~~~~~~~~s~~~~~~~y~~~~~~gy~~fg~ 280 (435)
||+ +.+|++..+..+..++|....+......++
T Consensus 241 nP~r~iPrai~~s~~i~~~~~~~~~~~~~~~~~~ 274 (475)
T TIGR03428 241 NPRRVAPRTILTALSVSALGGGLMILGALMAAPS 274 (475)
T ss_pred CcchhhhHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 998 799999999998887776665555444443
No 47
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.38 E-value=2.4e-11 Score=120.73 Aligned_cols=368 Identities=13% Similarity=0.071 Sum_probs=225.4
Q ss_pred CCCCchHHHHHHHHHHHHhhhhc-hHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHhhh-cC-CCCHHHHHHHHhCh
Q 013866 18 EKRPSVSGAVFNVATSIIGAGIM-SIPATIKVLGVIPAFVLIVIIACLTDISVDFLMRYTNA-GE-TSTYAGVMRESFGR 94 (435)
Q Consensus 18 ~~~~s~~~~~~~l~~~~iG~GiL-~LP~~~~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~-~~-~~~y~~l~~~~~G~ 94 (435)
+|+.++++..+.-++.++|+|++ ....+.++.|-..-++..++.+.....+...+.|...+ +. ..++...+++..|+
T Consensus 29 kR~L~~rhl~miaiGg~IGtGl~V~sG~~l~~~gp~s~iisf~i~g~~~~~~~~~~~E~~~~~P~~aGs~~~ya~~~i~e 108 (554)
T KOG1286|consen 29 KRCLKTRHLQMLAIGGTIGTGLFVGTGSALRNGGPPSLLISFIIAGIAALLSALCLGEFAVRFPVSAGSFYTYAYRFVGE 108 (554)
T ss_pred hccCCcccEEEEEecceeccceEEeccHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHheecccccccceeeeeeeeCc
Confidence 78899999999999999999996 57788999998888899999999999999999996654 44 36777889999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCccccchhhhhhcCccccchHHHHHHHHHHHHhccccccccchhh
Q 013866 95 AGSVAVQLCVMITNLGCLIIFLIIIGDVLCGKQPEGSVHLGVLQEWFGFHWWNTRVFALLFVMVFVMLPLALFRRVGSLR 174 (435)
Q Consensus 95 ~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~l~ 174 (435)
..++++.+.+++.....+..-....+.+++.... .+.... ..+..+...+...++..++++.+...+...+.+
T Consensus 109 ~~aF~~gWny~l~y~i~~a~e~~a~s~~~~~w~~--~~~~~~-----~~~~~~~~~~~~~fla~~v~in~~gv~~~ge~e 181 (554)
T KOG1286|consen 109 SLAFAIGWNYLLEYVIGLAAEARAWSSYLDYWTG--ASLIGI-----LVDTVNPGGWIPDFLAFILIINLFGVLAYGEVE 181 (554)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc--cccccc-----cccCCCCCccHHHHHHHHHHHHHHHHhhcccee
Confidence 9999999999999888888888777776644320 000000 000111122233334444555555555545555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCCCCCCCCCC-c-ccchhhhhhhhhhhhhhhhcccchhhhhhcCCCC
Q 013866 175 FSSAISVLLAVIFVAICSVMAIYAVWEGK---SKTPKLLPQLD-N-HVSVFDLFTAVPVIVTAFTFHFNVHPIGFEFDKP 249 (435)
Q Consensus 175 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~-~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p 249 (435)
.......++++.-.++..++........+ ....+.+.+.. - +.++.++..++.+..|+|.|.+.+-...+|-|||
T Consensus 182 f~~~~~kvl~~v~~~Il~iVi~~G~~~~d~~~~ig~~y~~~~g~F~p~gf~Gv~s~~~~~~fsf~G~e~va~~a~E~kNP 261 (554)
T KOG1286|consen 182 FSLAFNKILTAVGFIILAIVIIAGGGPADVKNWIGFRYWHDPGAFFPFGFKGVLSGAATAFFSFIGFELVATTAEEAKNP 261 (554)
T ss_pred ehHHHHHHHHHHHHHHhheeeecCCCcCCcCCCcCccccCCCCCcCCCCcceeeHHHHHHHHHHhhHHHHHHHHHhccCC
Confidence 44444433333322222222222211111 11111111111 1 1236789999999999999999999999999999
Q ss_pred c-hhHHHHHHHHHHHHHHHHHHHhHHhH--hcCCC-cchhh--hcCCCcCCcchhhhHHHHHHHHHHHHHHHHhhhhhhh
Q 013866 250 S-DMITAVRISLVICAAIYFSVGLFGYL--LFGES-IMSDI--LINFDQSSGSAISSLLNDLVRLSYALHLMLVFPMLNF 323 (435)
Q Consensus 250 ~-~~~~~~~~s~~~~~~~y~~~~~~gy~--~fg~~-~~~~i--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 323 (435)
+ +.++++..++..++.+|....+.-=+ .|.+. ..++. .+-+.-..+....+.+..+.++...+.+.++....++
T Consensus 262 ~k~IP~ai~~s~~ri~~~Yi~~~~~l~l~vpy~~~~L~~~~~~~spF~iai~~~~~k~~~~ivna~iL~~~~s~~n~~~y 341 (554)
T KOG1286|consen 262 RKAIPKAIKQSLLRILLFYILSSIVLGLLVPYNDPRLDPGAALASPFVIAIGNAGAKYLPHIVNAGILIGLLSSLNSSLY 341 (554)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHheEEeccCccccCCCCccccHHHHHHhccCccccchhhhHHHHHHHHHHHHHHhH
Confidence 8 79999999999999999997654333 22220 11111 0000000000001233458888899999999999999
Q ss_pred HHHHHHHHhhccCCccc----ccccchhhhHHHHHHHHHHHHHhhcCC-----HHHHHHhhhhhhhhhHHHhhhhHHHHH
Q 013866 324 SLRANIDELLFSQKPLL----AKDTKRFLSITLVLLVFSYTAAITIPD-----IWYFFQFLGSTSAVCLAFIFPGVIVLR 394 (435)
Q Consensus 324 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~a~~~p~-----~~~~~~~~G~~~~~~~~~i~P~~~~~~ 394 (435)
+..+.+..+..++.-+. ..++.+-+...++......+.++.... ++.++++.|.-.- +.+..=++.|++
T Consensus 342 ~~sR~l~amA~~G~~Pk~f~~v~~~g~P~~a~~v~~~~~~l~~~~~~~~~~~~f~~L~~~~si~tl--~~w~~i~~~~i~ 419 (554)
T KOG1286|consen 342 AGSRVLYALAKDGLAPKFFARVDRRGVPLVAVLVSGLFGALAALNFSLGAATVFNWLVNLSSIGTL--FAWTLVALSHLR 419 (554)
T ss_pred HhHHHHHHHHhcCCcchHHhhcCCCCCchhHHHHHHHHHHHHHHHhccccchHHHHHHHHHhHHHH--HHHHHHHHHHee
Confidence 99999888754433221 111222233333333444444444332 4677777655444 444444444544
No 48
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=99.36 E-value=1.5e-09 Score=108.80 Aligned_cols=256 Identities=8% Similarity=-0.021 Sum_probs=135.1
Q ss_pred CCCCCCCCchHHHHHHHHHHHHh--hhhc-hHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHhh-hcCCCCHHHHHH
Q 013866 14 SSKTEKRPSVSGAVFNVATSIIG--AGIM-SIPATIKVLGVIPAFVLIVIIACLTDISVDFLMRYTN-AGETSTYAGVMR 89 (435)
Q Consensus 14 ~~~~~~~~s~~~~~~~l~~~~iG--~GiL-~LP~~~~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~-~~~~~~y~~l~~ 89 (435)
+++-+|+.+.++.+...++. +| .|+. ..+.+..+.|....+...++.+++.......+.|... .++.....+.++
T Consensus 7 ~~~l~r~l~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~Gp~~~i~~~~i~gi~~l~~~~~~aEl~s~~P~~Gg~y~~~~ 85 (482)
T TIGR00907 7 KPELKREFSLWSIFGFAFSI-SNSWTGISTTYNYGLSSGGAMSIVWGWIIAGAGSICIALSLAELSSAYPTSGGQYFWSA 85 (482)
T ss_pred cceeecccchhHHHHHHHHH-HHHHHHHHHHHHHhhhcCCccchhHHHHHHHHHHHHHHHHHHHHHhhCCCCccHHHHHH
Confidence 34457889999998888884 44 5664 4556777888655678899999999999999999654 455566667778
Q ss_pred HHhC----hhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCccccchhhhhhcCccccchHHHHHHHHHHHHhccc
Q 013866 90 ESFG----RAGSVAVQLCVMITNLGCLIIFLIIIGDVLCGKQPEGSVHLGVLQEWFGFHWWNTRVFALLFVMVFVMLPLA 165 (435)
Q Consensus 90 ~~~G----~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~ 165 (435)
+.+| +...+++.+...+.....+.......++.+..+.... +.. +.+.+..+ ......+.++....++.+.
T Consensus 86 ~~~g~~~g~~~~f~~gW~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~-~~~~i~~~~~~~~~~in~~ 160 (482)
T TIGR00907 86 KLAPPRQMPFASWMTGWFNLAGQVAGTASTDLSVAQLILGIVSLT-TPG---REYIPTRW-HIFGIMIGIHLIHALINSL 160 (482)
T ss_pred HhcccccccceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCC---CCccccCc-hhhhhHHHHHHHHHHHHHh
Confidence 8876 4556777676666555555444444444332211000 000 00111111 1111111111222233333
Q ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC-----CCCCCCcc-cchhhhhhhhhhhhhhhhcccch
Q 013866 166 LFRRVGSLRFSSAISVLLAVIFVAICSVMAIYAVWEGKSKTPK-----LLPQLDNH-VSVFDLFTAVPVIVTAFTFHFNV 239 (435)
Q Consensus 166 ~~~~~~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~-~~~~~~~~~~~~~~faf~~~~~~ 239 (435)
-.|..++. ..+.....+...++..+.... ...++.+..+ ..++.+.+ ++......++....|+|.|.+..
T Consensus 161 g~k~~~~~---~~~~~~~~i~~~~~~~i~~l~-~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~fsf~G~e~~ 236 (482)
T TIGR00907 161 PTKWLPRI---TSSAAYWSLLGFLTICITLLA-CKSPKFNDGKFVFTNFNNSTGGWKPGGFAFLLGLLNPAWSMTGYDGT 236 (482)
T ss_pred hHhHHHHH---HHHHHHHHHHHHHHHhhhhhc-cCCCCCCChhhhheeeeCCCCCcCCCchhhhhhhhhhHHHhcCcchh
Confidence 33333333 322222111111111111111 0011111110 01110000 11123455566678999999999
Q ss_pred hhhhhcCCCCc-hhHHHHHHHHHHHHHHHHHHHhHHhHhcC
Q 013866 240 HPIGFEFDKPS-DMITAVRISLVICAAIYFSVGLFGYLLFG 279 (435)
Q Consensus 240 ~~i~~~m~~p~-~~~~~~~~s~~~~~~~y~~~~~~gy~~fg 279 (435)
....+|+|||+ +.+|++..+..+..+++....+..+...+
T Consensus 237 ~~~a~E~knP~r~iP~Ai~~s~~i~~~~~~~~~l~~~~~~~ 277 (482)
T TIGR00907 237 AHMAEEIENPEVVGPRAIIGAVAIGIVTGFCFNIVLFFSMG 277 (482)
T ss_pred hHHHHhcCChhhhcCHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999998 79999999988777655544333333333
No 49
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=99.32 E-value=4.5e-08 Score=98.43 Aligned_cols=245 Identities=14% Similarity=0.172 Sum_probs=132.0
Q ss_pred CCCCCchHHHHHHHHHHHHhhhhchHHHHHHhhChHHHHHHHHHHHHHH-HHHHHHHHHHhh-hcC-CCCHHHHHHHHhC
Q 013866 17 TEKRPSVSGAVFNVATSIIGAGIMSIPATIKVLGVIPAFVLIVIIACLT-DISVDFLMRYTN-AGE-TSTYAGVMRESFG 93 (435)
Q Consensus 17 ~~~~~s~~~~~~~l~~~~iG~GiL~LP~~~~~~G~~~g~i~l~~~~~~~-~~s~~~l~~~~~-~~~-~~~y~~l~~~~~G 93 (435)
++|+.|+++.+...+++++|.+ .+|.++++.|.. +++..++.+++. ......+.|... .++ ...-.+..++.+|
T Consensus 5 ~~~~l~~~~l~~~~~~~vig~~--~~~~~~~~~G~~-~i~~~~i~~~~~~l~~al~~aEL~s~~P~~aGG~Y~w~~~~~G 81 (496)
T PRK15238 5 TKKKLSLIGLILMIFTSVFGFA--NSPRAFYLMGYS-AIPWYILSAILFFIPFALMMAEYGSAFKDEKGGIYSWMNKSVG 81 (496)
T ss_pred ccCeeeHHHHHHHHHHHHHhCC--chHHHHHHcChH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHcC
Confidence 3678999999999999999976 679888888864 555666666554 345566778644 443 3566677899999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH----Hhhhc-ccCCCCCCCccccchhhhhhcCccccch-HHHHHHHHHHHHhccccc
Q 013866 94 RAGSVAVQLCVMITNLGCLIIFL----IIIGD-VLCGKQPEGSVHLGVLQEWFGFHWWNTR-VFALLFVMVFVMLPLALF 167 (435)
Q Consensus 94 ~~~~~~~~~~~~~~~~g~~~~y~----~~~~~-~l~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~pl~~~ 167 (435)
|+.+++..+..+........... ..... ....... +.+.... .+.. ....+.+..+.+.-....
T Consensus 82 ~~~gf~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~-~~~~~~~~~~a~~~~~~~t~vn~ 151 (496)
T PRK15238 82 PKFAFIGTFMWFASYIIWMVSTASKIWIPFSTFIFGKDTT---------QTWHFLG-LNSTQVVGILAVIWMILVTFVAS 151 (496)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchh---------hhhhhhc-ccchHHHHHHHHHHHHHHHHHHc
Confidence 99998776554433222111110 00000 0100000 0000000 1111 111111111122333344
Q ss_pred cccchhhHHHHHHHHHHHHHHH-HHHHHHHHHHhcC-CCCCCC---CC-CCCC-cccchhhhhhhhhhhhhhhhcccchh
Q 013866 168 RRVGSLRFSSAISVLLAVIFVA-ICSVMAIYAVWEG-KSKTPK---LL-PQLD-NHVSVFDLFTAVPVIVTAFTFHFNVH 240 (435)
Q Consensus 168 ~~~~~l~~~s~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~---~~-~~~~-~~~~~~~~~~~~~~~~faf~~~~~~~ 240 (435)
|..+..+.++.++....+...+ +.++..+.....+ +.+.+. .+ +..+ ++.+..+...++....|+|.|.+...
T Consensus 152 ~g~~~~~~i~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~ 231 (496)
T PRK15238 152 KGINKIAKVTSIGGIAVMLLNIVLLLVSIIILILNGGHFAQPIGVSSFVTSPNPAYQSPIAVLSFVVFAIFAYGGIEAVG 231 (496)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccHhhcccCCCCccccchHHHHHHHHHHHHHHhHHHHH
Confidence 5555555555443321111111 1111111111112 111110 01 1001 11111346667788899999999999
Q ss_pred hhhhcCCCCc-hhHHHHHHHHHHHHHHHHHHHhHH
Q 013866 241 PIGFEFDKPS-DMITAVRISLVICAAIYFSVGLFG 274 (435)
Q Consensus 241 ~i~~~m~~p~-~~~~~~~~s~~~~~~~y~~~~~~g 274 (435)
...+|+|||+ +.+|++..+...+.++|.+..+..
T Consensus 232 ~~a~E~~~p~~~~p~ai~~~~~~~~~~y~l~~~~~ 266 (496)
T PRK15238 232 GLVDKTENPEKNFPKGIIIAAIVISIGYSLAIFLW 266 (496)
T ss_pred HHHHhccCCCccccHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998 799999999999999999864433
No 50
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=99.23 E-value=4.4e-08 Score=98.02 Aligned_cols=244 Identities=13% Similarity=0.103 Sum_probs=123.6
Q ss_pred CCCchHHHHHHHHHHHHhhhhchHHHHHHhhChHHHHHHHHHHHHHHH-HHHHHHHHHhh-hcCCCCHHHHHHHHhChhH
Q 013866 19 KRPSVSGAVFNVATSIIGAGIMSIPATIKVLGVIPAFVLIVIIACLTD-ISVDFLMRYTN-AGETSTYAGVMRESFGRAG 96 (435)
Q Consensus 19 ~~~s~~~~~~~l~~~~iG~GiL~LP~~~~~~G~~~g~i~l~~~~~~~~-~s~~~l~~~~~-~~~~~~y~~l~~~~~G~~~ 96 (435)
||++++..++..+.++++.. .+|.+ ++.|. ..++.+++.+++.. -......|... .++.....+.+++.+|++.
T Consensus 1 ~~~~~~~l~~~~~~~v~~~~--~~~~~-a~~G~-~~~~~~~i~~~~~~ip~al~~aEL~~~~P~~GG~y~~~~~a~G~~~ 76 (474)
T TIGR03813 1 KKLTVVTLAIMNITAVVSLR--GLPAE-AEYGL-SAAFYYLFAAIFFLVPVSLVAAELATAWPEKGGVFRWVGEAFGARW 76 (474)
T ss_pred CcccHHHHHHHHHHHHHHhh--cchHH-HHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCceeeHhhhcChhH
Confidence 45788888887777777744 56755 56784 35555666665544 35666677543 3444556677899999999
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHhhhcccCCCCCCCccccchhhhhhcCccccchHHH-HHHHHHHHHhccccccccch
Q 013866 97 SVAVQLCVMITNLGCLI---IFLIIIGDVLCGKQPEGSVHLGVLQEWFGFHWWNTRVFA-LLFVMVFVMLPLALFRRVGS 172 (435)
Q Consensus 97 ~~~~~~~~~~~~~g~~~---~y~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~pl~~~~~~~~ 172 (435)
++...+..++....... .+....-........ . .+..+ ..+... ...+.....+-....+..+.
T Consensus 77 gf~~gw~~w~~~~~~~p~~~~~~~~~~~~~~~~~~-------~-~~~~~----~~~~~~~~~~l~~~~~~~~in~~gv~~ 144 (474)
T TIGR03813 77 GFLAIFMLWAQVTIWFPTVLTFGAVSLAFIGPEAT-------V-DESLA----GNKLYVLVSVLFVYWLATFIALRGVAA 144 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc-------c-Ccccc----cccHHHHHHHHHHHHHHHHHHhcChHH
Confidence 99998877776532111 111111111110000 0 00000 011111 11111111112223344444
Q ss_pred hhHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCC-CCCCCCC-CCcccchhhhhhhhhhhhhhhhcccchhhhhhcCCCC
Q 013866 173 LRFSSAIS-VLLAVIFVAICSVMAIYAVWEGKSK-TPKLLPQ-LDNHVSVFDLFTAVPVIVTAFTFHFNVHPIGFEFDKP 249 (435)
Q Consensus 173 l~~~s~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p 249 (435)
...++.+. .+..++..++.++..+.....++.. .+..+.+ .++..++.....+ ..+.|+|.|.+......+|+|||
T Consensus 145 ~~~i~~~~~~~~~ii~~~~~ii~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~-~~~~~af~G~e~~~~~a~E~knP 223 (474)
T TIGR03813 145 FTKVAKWGGIVGTIIPAAILVILGISYLLTGGESQIPLRWDDAFPDFTNFDNVVLA-ASIFLFYAGMEMNAVHVKDVDNP 223 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCHHHhCCCccccccHHHH-HHHHHHHhchhHhHHHHHhccCc
Confidence 33333322 1111111111111112222222211 1100110 1111122333322 24578999999999999999999
Q ss_pred c-hhHHHHHHHHHHHHHHHHHHHhHHhHhcC
Q 013866 250 S-DMITAVRISLVICAAIYFSVGLFGYLLFG 279 (435)
Q Consensus 250 ~-~~~~~~~~s~~~~~~~y~~~~~~gy~~fg 279 (435)
+ +.+|++..+..++.++|....+.-....+
T Consensus 224 ~r~iPrAi~~~~~~~~~~y~l~~~~~~~~~~ 254 (474)
T TIGR03813 224 DKNYPIAILIAALGTVLIFVLGTLAIAFIIP 254 (474)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 8 79999999999999999886655444443
No 51
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=99.21 E-value=1.4e-07 Score=94.82 Aligned_cols=231 Identities=12% Similarity=0.136 Sum_probs=120.4
Q ss_pred CCCCCchHHHHHHHHHHHHhhhhchHHHHHHhhChHHHHHHHHHHHHHH--HHHHHHHHHHhhh-c-CCCCHHHHHHHHh
Q 013866 17 TEKRPSVSGAVFNVATSIIGAGIMSIPATIKVLGVIPAFVLIVIIACLT--DISVDFLMRYTNA-G-ETSTYAGVMRESF 92 (435)
Q Consensus 17 ~~~~~s~~~~~~~l~~~~iG~GiL~LP~~~~~~G~~~g~i~l~~~~~~~--~~s~~~l~~~~~~-~-~~~~y~~l~~~~~ 92 (435)
++|+.|+++.++..+.+..+ +..+| .+++.|+ +.+...+.+.+. .-......|.... + +.....+.+++.+
T Consensus 2 ~~~~l~~~~~~~~~~~~v~~--~~~~~-~~a~~G~--~~i~~~i~~~l~~~lp~al~~AELas~~p~~~GG~y~wv~~a~ 76 (507)
T TIGR00910 2 KAKKLSLFGFFAITASMVLA--VYEYP-TFATSGF--HLVFFLLLGGILWFIPVALCAAEMATVDGWEEGGIFAWVSNTL 76 (507)
T ss_pred CCcEeeHHHHHHHHHHHHHH--HHhhH-HHHHhhH--HHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCeeeehhhcc
Confidence 35679999999888888875 56888 4667784 444445554444 3356677775442 2 3455556689999
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHH--Hh-hhcccCCCCCCCccccchhhhhhcCccccchHH-HHHHHHHHHHhcccccc
Q 013866 93 GRAGSVAVQLCVMITNLGCLIIFL--II-IGDVLCGKQPEGSVHLGVLQEWFGFHWWNTRVF-ALLFVMVFVMLPLALFR 168 (435)
Q Consensus 93 G~~~~~~~~~~~~~~~~g~~~~y~--~~-~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~pl~~~~ 168 (435)
|++.+++..+..++.......... .. ...+... .+ . .+. .... .+..+.++..+-+...+
T Consensus 77 G~~~Gf~~~~~~W~~~~~~~~~~~~~~~~~~~y~~~-~~----------~-~~~----~~~~~~i~~l~i~~~~t~~n~~ 140 (507)
T TIGR00910 77 GERFGFAAIFFGWFQIAIGFIPMIYFILGALSYILK-FP----------A-LNE----DPIIKFIAALIIFWALAFSQFG 140 (507)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-Cc----------h-hcc----CcHHHHHHHHHHHHHHHHHHHh
Confidence 999999887776665442221111 11 1111100 00 0 000 0111 11111111122222333
Q ss_pred ccchhhHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCCCCC-----CCCCCCCcccchhhhhhhhhhhhhhhhcccchhhh
Q 013866 169 RVGSLRFSSAISVLLAVIF-VAICSVMAIYAVWEGKSKTP-----KLLPQLDNHVSVFDLFTAVPVIVTAFTFHFNVHPI 242 (435)
Q Consensus 169 ~~~~l~~~s~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i 242 (435)
..+....++.++.+..... .++.++........++.... ...|+. .+ .+....+...+|+|.|.+.....
T Consensus 141 G~k~~~~i~~i~~~~~~~i~~~ili~l~~~~~~~g~~~~~~~~~~~~~p~~---~~-~~~~~~~~~~~faf~G~E~~a~~ 216 (507)
T TIGR00910 141 GTKRTAKIAKAGFFAGILIPAFILFALAAAYFHGGAPIAIEIDSHAFFPDF---SK-VGTLVVFVAFIGAYMGVEASASH 216 (507)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccCCcHHhcCCCc---cc-ccHHHHHHHHHHHHhcHHHHHHH
Confidence 3444434333322111111 11111111122222221110 111211 11 12333444568999999999999
Q ss_pred hhcCCCCc-hhHHHHHHHHHHHHHHHHHHHh
Q 013866 243 GFEFDKPS-DMITAVRISLVICAAIYFSVGL 272 (435)
Q Consensus 243 ~~~m~~p~-~~~~~~~~s~~~~~~~y~~~~~ 272 (435)
.+|+|||+ +++|++..+..+..++|.+..+
T Consensus 217 a~E~knP~r~~PrAi~~~~i~~~~l~~l~~~ 247 (507)
T TIGR00910 217 INELENPGRDYPLAMILLMIAAICLDAIGGF 247 (507)
T ss_pred HHHccCCcccccHHHHHHHHHHHHHHHHHHH
Confidence 99999998 7999999999999998876443
No 52
>KOG3832 consensus Predicted amino acid transporter [General function prediction only]
Probab=99.06 E-value=5.6e-09 Score=87.26 Aligned_cols=222 Identities=11% Similarity=0.152 Sum_probs=137.3
Q ss_pred chHHHHHHHHHHHHhhhhchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHhh--------------h--c------
Q 013866 22 SVSGAVFNVATSIIGAGIMSIPATIKVLGVIPAFVLIVIIACLTDISVDFLMRYTN--------------A--G------ 79 (435)
Q Consensus 22 s~~~~~~~l~~~~iG~GiL~LP~~~~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~--------------~--~------ 79 (435)
|-.-.....+|-++|+|.|+||.+|+.+||.+++.++.+.++++..+..+..++.. + .
T Consensus 13 sq~vgllymfnlivgtgalalpkafatagwllsi~ll~fl~fmsfmaatfviealaaanaqlhwkrle~~keeeddd~st 92 (319)
T KOG3832|consen 13 SQTVGLLYMFNLIVGTGALALPKAFATAGWLLSITLLTFLAFMSFMAATFVIEALAAANAQLHWKRLEKKKEEEDDDEST 92 (319)
T ss_pred hhhhhHhhhhhhhhccccccchHhHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhccccccc
Confidence 33345667889999999999999999999999999999999999999988877531 0 0
Q ss_pred -----------------------------------CCCCHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 013866 80 -----------------------------------ETSTYAGVMRESFGRAGSVAVQLCVMITNLGCLIIFLIIIGDVLC 124 (435)
Q Consensus 80 -----------------------------------~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~ 124 (435)
+....++++...|.|.+-.+.-+++.++++|-..+|...+-...-
T Consensus 93 asd~dvli~d~yeraekrpilsvqrrgspnpfeisdkvemgemasmffnkvgln~fyf~iiiylfgdlaiyaaavpfs~m 172 (319)
T KOG3832|consen 93 ASDDDVLIADGYERAEKRPILSVQRRGSPNPFEISDKVEMGEMASMFFNKVGLNFFYFAIIIYLFGDLAIYAAAVPFSAM 172 (319)
T ss_pred cCCCcEEEecCchhcccCCcceecccCCCCcceeehhhhHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhcCchHhh
Confidence 011446788888999999999999999999999999876553332
Q ss_pred CCCCC-----Ccc-ccchhh-----hhhc-CccccchHHHHHHHHHHHHhccccccccchhhHHHHHHHHHHHHHHHHHH
Q 013866 125 GKQPE-----GSV-HLGVLQ-----EWFG-FHWWNTRVFALLFVMVFVMLPLALFRRVGSLRFSSAISVLLAVIFVAICS 192 (435)
Q Consensus 125 ~l~~~-----~~~-~~~~~~-----~~~~-~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~l~~~s~~~~~~~~~~~~~~~ 192 (435)
++... .+. ....+. .|-+ -...+...+.+.+..+++.+|+.+. ++.+.+++.++..+.-..-.+..+
T Consensus 173 ~itcaa~g~dscgvead~~~~dtdrcwg~ilrrmdayr~flaiftlll~lpftf~-diqktk~iqiltslmrw~~~~~g~ 251 (319)
T KOG3832|consen 173 NITCAAIGADSCGVEADPCHEDTDRCWGEILRRMDAYRFFLAIFTLLLCLPFTFA-DIQKTKHIQILTSLMRWAAFILGI 251 (319)
T ss_pred hhhhhhcCCccccccCCcccccccccchHHHhhhHHHHHHHHHHHHHHcCceeEe-ccccchhHHHHHHHHHHHhccchh
Confidence 22111 110 001111 1211 0112222344445556677787774 456666666655432222211111
Q ss_pred HHHHHHHhcCCCCCCCCCCCCCcccchhhhhhhhhhhhhhhhcccchhhhhhcCCCCc
Q 013866 193 VMAIYAVWEGKSKTPKLLPQLDNHVSVFDLFTAVPVIVTAFTFHFNVHPIGFEFDKPS 250 (435)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~ 250 (435)
++.. .+...+....+| +...+-++-..++..+|+|.+|...|.....++.+.
T Consensus 252 --~l~t-mqaeedaa~a~p---~arc~cgfgkl~~~aly~~~a~cmapda~gagq~k~ 303 (319)
T KOG3832|consen 252 --SLAT-MQAEEDAAAAHP---PARCFCGFGKLFGCALYAFMAHCMAPDAIGAGQTKD 303 (319)
T ss_pred --hhhh-hhhcccccccCC---ccccccccccccchhhHHHHhhccCCCCCCCCeecc
Confidence 1110 011111111222 223344555667889999999999999888776554
No 53
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=99.04 E-value=2.6e-09 Score=106.99 Aligned_cols=285 Identities=15% Similarity=0.138 Sum_probs=172.8
Q ss_pred HHHHHHhhhhc-hHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHhhh-cCCCCHHHHHHHHhChhHHHHHHHHHHHH
Q 013866 30 VATSIIGAGIM-SIPATIKVLGVIPAFVLIVIIACLTDISVDFLMRYTNA-GETSTYAGVMRESFGRAGSVAVQLCVMIT 107 (435)
Q Consensus 30 l~~~~iG~GiL-~LP~~~~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~-~~~~~y~~l~~~~~G~~~~~~~~~~~~~~ 107 (435)
.++.++|.|.+ ..+.+..+.|....++..++.+++.......+.|..++ ++...+.+.+++.+|+..+..+.+.+++.
T Consensus 6 ~ig~~ig~g~f~~~g~~~~~~G~~~~~la~li~~i~~~~~~~~~~ems~~~p~~Gg~y~y~~~~lg~~~Gf~~gw~y~~~ 85 (478)
T PF00324_consen 6 SIGGIIGTGLFLGSGFAIAAAGPGGAPLAYLIAGIIVLLVALSLAEMSRRFPSAGGFYAYASRGLGPALGFAAGWAYWLS 85 (478)
T ss_pred eHHHHHHHHHHHHHHHHHHhcccccchhHhHHHHHHHHhhhhhhhhhhhhhccccchhhhhhhccCCcCCceeeHHHHHH
Confidence 46788999986 57778889997667888999999999999999996654 55677778899999999999999998887
Q ss_pred HHHHHHHHHHhhhcccCCC--CCCCccccchhhhhhcCccccchHHHHHHHHHHHHhccccccccchhhHHHHHHHHHHH
Q 013866 108 NLGCLIIFLIIIGDVLCGK--QPEGSVHLGVLQEWFGFHWWNTRVFALLFVMVFVMLPLALFRRVGSLRFSSAISVLLAV 185 (435)
Q Consensus 108 ~~g~~~~y~~~~~~~l~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~l~~~s~~~~~~~~ 185 (435)
............+..++.. .++. + ..+.....+..++...+..+.+.-.|...+.+.....-.+..+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~----~~~~~~~~~~~i~~~~~~~l~~~gv~~~~~~~~~~~~i~~~~l 154 (478)
T PF00324_consen 86 YIAAIAAEATAAGSFLQFWGYFPGL-------P----STWVWGILIAIIFILLITLLNLFGVRVSGKIEFILTIIKLIAL 154 (478)
T ss_pred HHHHHHhhhhhhhhhhccccccccc-------c----ccccccchhhhhhhhhhhhhhhhhhhccchHHHHHHHHhhhHh
Confidence 7777666666666555433 2211 0 0011000112223333344445555656555544322222111
Q ss_pred HHHHHHHHHH-HHHHhcCCCCCC----------CCCCCC---CcccchhhhhhhhhhhhhhhhcccchhhhhhcCCCCc-
Q 013866 186 IFVAICSVMA-IYAVWEGKSKTP----------KLLPQL---DNHVSVFDLFTAVPVIVTAFTFHFNVHPIGFEFDKPS- 250 (435)
Q Consensus 186 ~~~~~~~~~~-~~~~~~~~~~~~----------~~~~~~---~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~- 250 (435)
...+ +.. +.....++.... +..|.. .+..++.+++.++...+++|.|.+......+|.|||+
T Consensus 155 i~~i---i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~a~~a~E~k~P~k 231 (478)
T PF00324_consen 155 IAFI---IVGVIILFFGGGPSNGRYWGDPGSFANNFPPGFTDPSGGGFSGFFAALVFAFFAFVGFESIAILAEEAKNPRK 231 (478)
T ss_pred hhhh---hhcccccccccCCCcccccccccccccccccccccccccchhHHHHhhhhhhcccccccccccccccCCCchh
Confidence 1111 111 111111111111 011100 0112367899999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhHHhHhcCCCcchhhh---------cCCCcCCcchhhhHHHHHHHHHHHHHHHHhhhhh
Q 013866 251 DMITAVRISLVICAAIYFSVGLFGYLLFGESIMSDIL---------INFDQSSGSAISSLLNDLVRLSYALHLMLVFPML 321 (435)
Q Consensus 251 ~~~~~~~~s~~~~~~~y~~~~~~gy~~fg~~~~~~i~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 321 (435)
+.+|++..+.....++|.......-...+.+..+... ....... .++...+.++....+.+.+..-.
T Consensus 232 ~IPra~~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~----~~~~~~i~~~~~l~s~~s~~~~~ 307 (478)
T PF00324_consen 232 TIPRATLLSVLRIGVFYVLTSYALTLAVPYDNLGLTAASNSASPFVIAAQYSG----GPWLAWIVNAGILISAFSSANAS 307 (478)
T ss_pred hhhhHhhhhhhhhhhhhhhhhhhcccccCccchhhccccccccchhhhhhhcc----cccccceecccchhhhhhhhhhh
Confidence 8999999999999999999866655555543321111 0011100 13445566666666666665555
Q ss_pred hhHHHHHHHHh
Q 013866 322 NFSLRANIDEL 332 (435)
Q Consensus 322 ~~~~~~~~~~~ 332 (435)
.+...+.+..+
T Consensus 308 ~~~~sR~l~am 318 (478)
T PF00324_consen 308 LYAASRLLYAM 318 (478)
T ss_pred hcccceeehhh
Confidence 55555444433
No 54
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=98.99 E-value=6.9e-07 Score=81.05 Aligned_cols=101 Identities=17% Similarity=0.250 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHhhhhch---HHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHhChhHHHHH
Q 013866 24 SGAVFNVATSIIGAGIMS---IPATIKVLGVIPAFVLIVIIACLTDISVDFLMRYTNAGETSTYAGVMRESFGRAGSVAV 100 (435)
Q Consensus 24 ~~~~~~l~~~~iG~GiL~---LP~~~~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~y~~l~~~~~G~~~~~~~ 100 (435)
.+..+-.+++++|+|.-+ +=.-|..-|+ .|+...++++++-..+.....+..++-+.++|.|.-++.+||+...+.
T Consensus 6 ~~~~f~~ig~~vGAGfAsGqEi~QFF~~~G~-~s~~gIivs~vlf~~~g~vim~ig~~f~a~~y~~~~~~v~~~~~~ki~ 84 (349)
T COG3949 6 MRWAFAFIGTVVGAGFASGQEIMQFFGKYGV-YSILGIILSTVLFTLSGAVIMTIGKKFNATSYREILKYVSGPKFAKII 84 (349)
T ss_pred HHHHHHHHHHhhcccccchHHHHHHHHHhhh-hhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhhHHHHHHH
Confidence 345667788999999654 2222444564 478888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccCC
Q 013866 101 QLCVMITNLGCLIIFLIIIGDVLCG 125 (435)
Q Consensus 101 ~~~~~~~~~g~~~~y~~~~~~~l~~ 125 (435)
+..+.+.+++.+++-+.-.|..+++
T Consensus 85 d~~iif~lf~~~vVM~AGags~~~e 109 (349)
T COG3949 85 DIIIIFFLFSTAVVMLAGAGSLLEE 109 (349)
T ss_pred HHHHHHHHHHHHHHHhccchhHHHH
Confidence 9999999999999988877777753
No 55
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=98.71 E-value=2.8e-05 Score=77.01 Aligned_cols=262 Identities=15% Similarity=0.102 Sum_probs=137.6
Q ss_pred CCCCCCCCCchHHHHHHHHHHHHhhhhchHHHHHHh--hChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHH
Q 013866 13 PSSKTEKRPSVSGAVFNVATSIIGAGIMSIPATIKV--LGVIPAFVLIVIIACLTDISVDFLMRYTNAGETSTYAGVMRE 90 (435)
Q Consensus 13 ~~~~~~~~~s~~~~~~~l~~~~iG~GiL~LP~~~~~--~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~y~~l~~~ 90 (435)
+.++++|+.++++-+..-.+..+...-+........ .++..+++..++...+...-.-+......+++. ++.-+.|.
T Consensus 6 pvp~~~R~~~~~~~~~~W~~~~~~v~~~~~Ga~l~~~GLs~~~ailai~lG~~i~~~~~~l~~~~G~r~Gl-~~~v~sR~ 84 (442)
T TIGR00800 6 PVKEEERTWSFLNYFSLWLGAAFNIATWAIGALGLPLGLSWWQSVIAIILGNLLGGIFVALNSRAGAKYGL-PFPVLSRA 84 (442)
T ss_pred CCCcccCCccHHHHHHHHHHHhhhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHhhhhHHHhCC-Ccchhhhh
Confidence 334556666777777777766666555555444333 456667777777766666555555555555544 44467899
Q ss_pred HhChhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCccccchhhhhhcCccccchHHHHHHHHHHHHhcccccccc
Q 013866 91 SFGRAGSVAVQLCVMITNLGCLIIFLIIIGDVLCGKQPEGSVHLGVLQEWFGFHWWNTRVFALLFVMVFVMLPLALFRRV 170 (435)
Q Consensus 91 ~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~ 170 (435)
.||+++..+..++..+...+=...-....++.+..++........ + .++. .+.......++...+.+++......
T Consensus 85 ~FG~~Gs~~~~~~~~i~~igW~av~~~~~g~al~~~l~~i~~~~~---~-~~~~-~t~~~~~~~~i~~~l~~~~~~~~g~ 159 (442)
T TIGR00800 85 SFGIYGSLLPSLLRIVMAIGWYGVQAWVGGLCVALMLDSIFPGYL---H-LGNG-MTTLELICFIIFWALVLVFLFFFGY 159 (442)
T ss_pred hhhhhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhccccc---c-cCCc-ccHHHHHHHHHHHHHHHHHHHcCHH
Confidence 999999999999999988888888777777766544321100000 0 0000 0001111112222233332222222
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcccchhhhhhhhhhhhhhhh-cccchhhhhhcCCCC
Q 013866 171 GSLRFSSAISVLLAVIFVAICSVMAIYAVWEGKSKTPKLLPQLDNHVSVFDLFTAVPVIVTAFT-FHFNVHPIGFEFDKP 249 (435)
Q Consensus 171 ~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~-~~~~~~~i~~~m~~p 249 (435)
+-.+.....+.........+ ..+...+. .+..+..+..++.++......+..++...+-.+. .-.+.++..+.+|++
T Consensus 160 ~~~~~~~~~a~~~~~~~~~~-~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g~~~s~~~~~~DysRy~~~~ 237 (442)
T TIGR00800 160 KIRHLFEWLAVVPPFAAFGM-LIWALSKA-HGKGPLGELTGTLHGSTGAWAFLYALSLVIGSFATWATNAPDFTRFGKSK 237 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHc-CCCCccccCCCCCCcchhHHHHHHHHHHHHHHHHHHHcCchhhhhhcCCc
Confidence 22222333333211111111 11111110 1111111111111112233445555555333333 445889999999998
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhHHhHh----cCCCc
Q 013866 250 SDMITAVRISLVICAAIYFSVGLFGYLL----FGESI 282 (435)
Q Consensus 250 ~~~~~~~~~s~~~~~~~y~~~~~~gy~~----fg~~~ 282 (435)
++-.+....+..........+|+.+-.. +|+..
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~g~~~a~~~~~~~g~~~ 274 (442)
T TIGR00800 238 KTAIWGQFLALPGGFTLTCFFGILGAAAAYAAYGEPY 274 (442)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 8766677888888888888887777765 77543
No 56
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=98.71 E-value=6.1e-05 Score=72.65 Aligned_cols=302 Identities=13% Similarity=0.155 Sum_probs=161.4
Q ss_pred hChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCC
Q 013866 49 LGVIPAFVLIVIIACLTDISVDFLMRYTNAGETSTYAGVMRESFGRAGSVAVQLCVMITNLGCLIIFLIIIGDVLCGKQP 128 (435)
Q Consensus 49 ~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~l~~ 128 (435)
.++..+++..++.-++...-.-....-..+.+..+. .+++..||++++++..+...+++.|=...-....++...+. +
T Consensus 49 L~~~~si~aillG~llG~i~~A~~s~~Ga~~Glpqm-i~sR~~fG~~Gs~l~sll~~~~~iGW~~v~~~l~~~a~~~~-~ 126 (442)
T COG1457 49 LSFGQSLLAILLGNLLGGIFMAYFSYQGARTGLPQM-ILSRYPFGVKGSILPSLLNGITLIGWFGVNVILSGIAIGSG-T 126 (442)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChh-eeecccccchhHHHHHHHHHHHHhhHHHHHHHHhccccccC-C
Confidence 444445555544444333322222222333444343 56899999999999999999999999999888888763211 1
Q ss_pred CCccccchhhhhhcCccccchHHHHHHHHHHHHhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 013866 129 EGSVHLGVLQEWFGFHWWNTRVFALLFVMVFVMLPLALFRRVGSLRFSSAISVLLAVIFVAICSVMAIYAVWEGKSKTPK 208 (435)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (435)
+ ++.....++...+..+.-+.-.|.++.+++.+..-..+..... .+...++....+.
T Consensus 127 -------------~---~~~~~~ili~g~l~~l~~ifG~r~l~~l~~~a~~~~~~lf~~l-------~~~~~~~~~~~~~ 183 (442)
T COG1457 127 -------------G---LPVWAGILIIGVLMTLVTIFGYRALHKLERIAVPLLLLLFLYL-------LALLFRSKGGLDA 183 (442)
T ss_pred -------------C---CcHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhcccccce
Confidence 0 1112222222222233334445666666655554443222211 2222222111111
Q ss_pred CCCCCCcccchhhhhhhhhhhhhhhh-cccchhhhhhcCCCCc--hhHHHHHHHHHHHHHHHHHHHhHHhHhcCCCc-ch
Q 013866 209 LLPQLDNHVSVFDLFTAVPVIVTAFT-FHFNVHPIGFEFDKPS--DMITAVRISLVICAAIYFSVGLFGYLLFGESI-MS 284 (435)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~faf~-~~~~~~~i~~~m~~p~--~~~~~~~~s~~~~~~~y~~~~~~gy~~fg~~~-~~ 284 (435)
.+.. ...++.++..+++...-.+. .-+...++.+.+|+|+ |.-.....+..+...+-+++|.+...+-|+.. ..
T Consensus 184 ~~~~--~~~~~~~fl~a~slv~g~~~sw~~~~aDysRy~~~~t~~~~~~~~~~G~~l~~~~~~ilGa~~a~a~g~~~~~~ 261 (442)
T COG1457 184 LWVK--GPTSPLSFLSALSLVIGSFASWGPYAADYSRYAPSPTPSKAFLAAVLGFFLGTSFMMILGAALAAAAGNADSIA 261 (442)
T ss_pred eecc--CCCcchhHHHHHHHHHHHHHhhhhhhhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHH
Confidence 1211 11233344444444333333 3357778899999999 77778888888888899999999999988866 33
Q ss_pred hhhcCCCcCCcchhhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCcccccccchhhhHHHHHHHHHHHHHh-
Q 013866 285 DILINFDQSSGSAISSLLNDLVRLSYALHLMLVFPMLNFSLRANIDELLFSQKPLLAKDTKRFLSITLVLLVFSYTAAI- 363 (435)
Q Consensus 285 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~- 363 (435)
+....+.+ +...+.+...+....+--..+++..-.+.+...+- ++..+.....+. ...++++
T Consensus 262 ~~~~~~G~---------~g~~~~lil~l~~~ttN~~nlYsa~ls~~~i~~~l-----~k~~~~v~~~v~---igt~la~~ 324 (442)
T COG1457 262 DVMLGLGG---------FGLPAILILVLGTVTTNANNLYSAGLSFANIIPKL-----SKVTRVVIAGVG---IGTLLALA 324 (442)
T ss_pred HHHHhccc---------HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhhhh-----hhHHHHHHHHHH---HHHHHHHH
Confidence 33333221 33344455666666666666666666555554221 112222222221 2223333
Q ss_pred ---hcCCHHHHHHhhhhhhhhhHHHhhhhHHHHH
Q 013866 364 ---TIPDIWYFFQFLGSTSAVCLAFIFPGVIVLR 394 (435)
Q Consensus 364 ---~~p~~~~~~~~~G~~~~~~~~~i~P~~~~~~ 394 (435)
+..++++.+.+.|....+.....+-=.+-.|
T Consensus 325 ~~~f~~~f~~Fl~~i~~~i~P~~~I~iad~~~~r 358 (442)
T COG1457 325 GPFFYNFFENFLLLLGYFIPPWGGVMIADYFIVR 358 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3557778888888775555555544444333
No 57
>PRK11375 allantoin permease; Provisional
Probab=98.69 E-value=5.4e-05 Score=75.51 Aligned_cols=354 Identities=13% Similarity=0.098 Sum_probs=164.7
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHhhhhchHHHHH--HhhChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHH
Q 013866 12 LPSSKTEKRPSVSGAVFNVATSIIGAGIMSIPATI--KVLGVIPAFVLIVIIACLTDISVDFLMRYTNAGETSTYAGVMR 89 (435)
Q Consensus 12 ~~~~~~~~~~s~~~~~~~l~~~~iG~GiL~LP~~~--~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~y~~l~~ 89 (435)
.+-++++|+-++++-+..-.+..+..+.+.+-.+. ...++..+++..++..++...-.-+..+...++ ..++.-+.|
T Consensus 18 ~pvp~~~Rt~~~~~~~~~W~g~~~~i~~~~~~g~~l~~GLs~~~ai~ai~lG~~i~~~~~~l~g~~G~~~-Gl~~~v~sR 96 (484)
T PRK11375 18 LPKTQSQRTWKTFNYFTLWMGSVHNVPNYVMVGGFFILGLSTFSIMLAIILSAFFIAAVMVLNGAAGSKY-GVPFAMILR 96 (484)
T ss_pred CcCCccccCCcHHHHHHHHHHHhccHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHhccccccc-CCChhHhHH
Confidence 33445677777777666655555543333222121 224456666666666655554444444444343 446677899
Q ss_pred HHhChhHHHHHHHHHH-HHHHHHHHHHHHhhhcccC----CCCCCCccccchhhhhhcCccccchHHHHHHHHHHHHhcc
Q 013866 90 ESFGRAGSVAVQLCVM-ITNLGCLIIFLIIIGDVLC----GKQPEGSVHLGVLQEWFGFHWWNTRVFALLFVMVFVMLPL 164 (435)
Q Consensus 90 ~~~G~~~~~~~~~~~~-~~~~g~~~~y~~~~~~~l~----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl 164 (435)
..||++|..+..+... +..++=...-....++.+. ++.+...+..+..+ ..+ .+.......++..++..+.
T Consensus 97 ~sFG~~Gs~l~~~~rai~~~igW~~vqt~~~g~al~~~l~~i~~~~~~~~~~~~-~~g---~~~~~~i~~~i~~~l~~~~ 172 (484)
T PRK11375 97 ASYGVRGALFPGLLRGGIAAIMWFGLQCYAGSLALLILIGKIWPGFLTLGGDFT-LLG---LSLPGLITFLIFWLVNVGI 172 (484)
T ss_pred HHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccc-cCC---CcHHHHHHHHHHHHHHHHH
Confidence 9999999888887774 3444433333334444433 22221111100000 011 1111212111222233333
Q ss_pred ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC-CCCCC--CCcccchhhhhhhhhhhhhhhh-cccchh
Q 013866 165 ALFRRVGSLRFSSAISVLLAVIFVAICSVMAIYAVWEGKSKTP-KLLPQ--LDNHVSVFDLFTAVPVIVTAFT-FHFNVH 240 (435)
Q Consensus 165 ~~~~~~~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~faf~-~~~~~~ 240 (435)
. ....+.++++..++..+.....+...+..+... +.... +..|. .+.......+..++...+-++. .-.+.|
T Consensus 173 ~-~~g~~~i~~l~~i~~p~~~i~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~i~~vig~~~~~~~~~~ 248 (484)
T PRK11375 173 G-FGGGKVLNKFTAILNPCIYIVFGGMAIWAISLV---GIGPIFDYIPSGIQKAENSGFLFLVVINAVVAVWAAPAVSAS 248 (484)
T ss_pred H-HcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---CCchhhccCcccccCCcchHHHHHHHHHHHHHHHHHHHcccc
Confidence 2 344455555555554433222222222222221 11111 01111 0111123445555544444555 445899
Q ss_pred hhhhcCCCCchhHHHHHHHHHHHHHHHHHHHhHH----hHhcCCCcch--hhhcCCCcCCcchhhhHHHHHHHHHHHHHH
Q 013866 241 PIGFEFDKPSDMITAVRISLVICAAIYFSVGLFG----YLLFGESIMS--DILINFDQSSGSAISSLLNDLVRLSYALHL 314 (435)
Q Consensus 241 ~i~~~m~~p~~~~~~~~~s~~~~~~~y~~~~~~g----y~~fg~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (435)
+..+..|++++..+....+..+...+...+|+.. ...+|+...+ ++...+++ .......-+...++.
T Consensus 249 D~tRy~k~~~~~~~~~~~g~~i~~~~~~~~g~~~~~~a~~~~g~~~~dp~~i~~~~~~-------~~~~~~a~l~~v~a~ 321 (484)
T PRK11375 249 DFTQNAHSFRAQALGQTLGLVVAYILFAVASVCIIAGASIHYGADTWNVLDIVQRWDS-------LFASFFAVLVILMTT 321 (484)
T ss_pred chhcccCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHhcc-------hHHHHHHHHHHHHHH
Confidence 9999999998777777777777776665554433 3456653322 22232211 122222333444444
Q ss_pred HHhh-hhhhhHHHHHHHHhhccCCcccccccchhhhHHHHHHHHHHHHHh--hcCC---HHHHHHhhhhhhhhhHHHhhh
Q 013866 315 MLVF-PMLNFSLRANIDELLFSQKPLLAKDTKRFLSITLVLLVFSYTAAI--TIPD---IWYFFQFLGSTSAVCLAFIFP 388 (435)
Q Consensus 315 ~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~--~~p~---~~~~~~~~G~~~~~~~~~i~P 388 (435)
+.+- ..+.++....+.+.+ ++.. +++| . ..+..++..+++. .+.+ +.++++..|++..+.....+-
T Consensus 322 ~~tN~~~N~ys~~~~l~~l~-pk~i----~~~~-~--~~i~~iig~~~~pw~~~~~~~~f~~FL~~lg~~l~Pi~gImi~ 393 (484)
T PRK11375 322 ISTNATGNIIPAGYQIAALA-PTKL----TYKN-G--VLIASIISLLICPWKLMENQDSIYLFLDIIGGMLGPVIGVMMA 393 (484)
T ss_pred HHHHHHhhcccHHHHHHHhC-cCcc----chhh-H--HHHHHHHHHHhccHHHhccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4442 345666666665554 2211 1122 1 1111112222221 1223 778888888887766665553
Q ss_pred h
Q 013866 389 G 389 (435)
Q Consensus 389 ~ 389 (435)
=
T Consensus 394 D 394 (484)
T PRK11375 394 H 394 (484)
T ss_pred h
Confidence 3
No 58
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=98.53 E-value=0.00088 Score=67.25 Aligned_cols=238 Identities=12% Similarity=0.089 Sum_probs=120.2
Q ss_pred CCCCCchHHHHHHHHHHHHhhhh-chHHHHHHhhChHHHHHHH---HHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHh
Q 013866 17 TEKRPSVSGAVFNVATSIIGAGI-MSIPATIKVLGVIPAFVLI---VIIACLTDISVDFLMRYTNAGETSTYAGVMRESF 92 (435)
Q Consensus 17 ~~~~~s~~~~~~~l~~~~iG~Gi-L~LP~~~~~~G~~~g~i~l---~~~~~~~~~s~~~l~~~~~~~~~~~y~~l~~~~~ 92 (435)
..|+.+++-..+.+..+.+|++. ++.|....+.|+....... ....+...+-...+.+..++.+..|..|+.++-|
T Consensus 39 agr~~~~~~~~~s~~at~~s~~t~ig~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~T~~e~l~~Ry 118 (483)
T PRK09442 39 GNRSMGGFVLAMTLIATYISASSFIGGPGAAYKYGLGWVLLAMIQVPTVWLSLGILGKKFAILARKYNAVTLNDMLRARY 118 (483)
T ss_pred eCCCccHHHHHHHHHHHHhhHhHHhCChhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHh
Confidence 47888888888888888877754 6788777777764211111 1111111122233445557788999999999999
Q ss_pred Chh-HHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCccccchhhhhhcCccccchHHHHHHHHHHHHhccccccccc
Q 013866 93 GRA-GSVAVQLCVMITNLGCLIIFLIIIGDVLCGKQPEGSVHLGVLQEWFGFHWWNTRVFALLFVMVFVMLPLALFRRVG 171 (435)
Q Consensus 93 G~~-~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~ 171 (435)
|++ .+.+..+...+..++....-+...+..++.+. + ++.. ..+++..+++.-......++
T Consensus 119 g~~~~~~~~~i~~~~~~~~~~~~ql~~~g~~l~~~~--------------g---i~~~--~~iii~~~iv~iYt~~GGl~ 179 (483)
T PRK09442 119 QSRLLVWLASLSLLVFFFAAMTAQFIGGARLLETAT--------------G---ISYE--TGLLIFGITVALYTAFGGFR 179 (483)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------------C---CCHH--HHHHHHHHHHHHHHHhccHH
Confidence 965 45555555555555445555555565554322 1 1111 12222333445566677777
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---------CCCCC-CCC-CCcccchhhhhhhhhhhhhhhhcccchh
Q 013866 172 SLRFSSAISVLLAVIFVAICSVMAIYAVWEGKS---------KTPKL-LPQ-LDNHVSVFDLFTAVPVIVTAFTFHFNVH 240 (435)
Q Consensus 172 ~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~-~~~-~~~~~~~~~~~~~~~~~~faf~~~~~~~ 240 (435)
...+...+..++.....+++....... .|+. ..++. .|. .++..++.......-...+...+++...
T Consensus 180 av~~TD~iQ~~i~~~~~~vi~~~~~~~--~gG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~~ 257 (483)
T PRK09442 180 AVVLTDALQGIVMLVGTVILLIGVIHA--GGGLENAVQTLQAIDPQLVTPQGADDILSPPFMTSFWILVCFGVIGLPHTA 257 (483)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCHHHHHHHHHhcCccccCCCCCCccccHHHHHHHHHHHHHHHhCCCHHH
Confidence 777777777654333332222222211 1111 01111 110 0000111111110011122233333332
Q ss_pred hhhhcCCCCchhHHHHHHHHHHHHHHHHHHHhHHh
Q 013866 241 PIGFEFDKPSDMITAVRISLVICAAIYFSVGLFGY 275 (435)
Q Consensus 241 ~i~~~m~~p~~~~~~~~~s~~~~~~~y~~~~~~gy 275 (435)
+=.-..|++++.+|...++......++....+.|.
T Consensus 258 qR~~aaks~~~a~~~~~~~~~~~~~~~~~~~~~G~ 292 (483)
T PRK09442 258 VRCMSYKDSKALHRGIIIGTIVVGFLMFGMHLAGA 292 (483)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22333567778888888887766666665555553
No 59
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=98.52 E-value=0.0011 Score=66.47 Aligned_cols=111 Identities=14% Similarity=0.090 Sum_probs=83.5
Q ss_pred CCCCCchHHHHHHHHHHHHh-hhhchHHHHHHhhChHHHHHHHH---HHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHh
Q 013866 17 TEKRPSVSGAVFNVATSIIG-AGIMSIPATIKVLGVIPAFVLIV---IIACLTDISVDFLMRYTNAGETSTYAGVMRESF 92 (435)
Q Consensus 17 ~~~~~s~~~~~~~l~~~~iG-~GiL~LP~~~~~~G~~~g~i~l~---~~~~~~~~s~~~l~~~~~~~~~~~y~~l~~~~~ 92 (435)
..|+.+.+-..+....+..+ ...+++|....+.|+....+... ...+...+-...+.+..++++..|.+|+-++-|
T Consensus 36 ~gR~lg~~v~~ls~~as~~s~~t~lG~~g~ay~~G~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~T~~d~l~~Rf 115 (493)
T COG0591 36 GGRSLGPFVYALSAAASDTSGWTFLGLPGLAYASGLSGLWIAIGLLIGAFLLWLLFAPRLRRLAKARGATTIPDFLEARF 115 (493)
T ss_pred cCCcCChHHHHHHHHHHHHHHHHHhcchHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccHHHHHHHHc
Confidence 36666666666666666666 77789999999888655444444 333444444555666667788999999999999
Q ss_pred C-hhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCC
Q 013866 93 G-RAGSVAVQLCVMITNLGCLIIFLIIIGDVLCGKQ 127 (435)
Q Consensus 93 G-~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~l~ 127 (435)
| |+.|.+..+...+..+.-+..-+...++.++..+
T Consensus 116 ~s~~lr~l~ali~iv~~i~yia~ql~~~~~~~~~~~ 151 (493)
T COG0591 116 GSKILRILSALIIIVFFIPYIALQLVAGGLLLSLLF 151 (493)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 9 9999999999999999999998888888775443
No 60
>PRK12488 acetate permease; Provisional
Probab=98.51 E-value=0.002 Score=65.64 Aligned_cols=148 Identities=12% Similarity=0.081 Sum_probs=89.4
Q ss_pred CCCCCchHHHHHHHHHHHHhhhh-chHHHHHHhhChHHHHHHHHHHHHHHHHH-HHHHHHHhhhcCCCCHHHHHHHHhC-
Q 013866 17 TEKRPSVSGAVFNVATSIIGAGI-MSIPATIKVLGVIPAFVLIVIIACLTDIS-VDFLMRYTNAGETSTYAGVMRESFG- 93 (435)
Q Consensus 17 ~~~~~s~~~~~~~l~~~~iG~Gi-L~LP~~~~~~G~~~g~i~l~~~~~~~~~s-~~~l~~~~~~~~~~~y~~l~~~~~G- 93 (435)
..|+.+++...+.+..+.++++. ++.|....+.|+.. .. ..+...+.+.- ..++.+-.++.+..|.+|.-++=||
T Consensus 65 aGR~l~~~~~~~si~at~~Sa~sflG~~G~~y~~G~~~-~~-~~~g~~~g~~~~~~~~a~~lr~~g~~T~~d~l~~Rf~s 142 (549)
T PRK12488 65 AGGGLTGMQNGLAIAGDMISAASFLGISAMMFMNGYDG-LL-YALGVLAGWPIILFLIAERLRNLGKYTFADVVSYRLAQ 142 (549)
T ss_pred eCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhH-HH-HHHHHHHHHHHHHHHHHHHHHHCCCcchHHHHHHHcCC
Confidence 37889999999999999888776 57998877788642 21 11222222221 2334444456778899999888887
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCccccchhhhhhcCccccchHHHHHHHHHHHHhccccccccchh
Q 013866 94 RAGSVAVQLCVMITNLGCLIIFLIIIGDVLCGKQPEGSVHLGVLQEWFGFHWWNTRVFALLFVMVFVMLPLALFRRVGSL 173 (435)
Q Consensus 94 ~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~l 173 (435)
|+.|.+..+...+..+.-...-+...+..++.+. + ++.. ..+ ++..++..-......++..
T Consensus 143 ~~~r~laai~~i~~~~~yl~~q~~g~g~il~~l~--------------g---i~~~-~~i-ii~~~i~~~Yt~~GGm~av 203 (549)
T PRK12488 143 GPVRLTAAFGTLTVVLMYLVAQMVGAGKLIELLF--------------G---ISYL-YAV-VIVGALMVLYVTFGGMLAT 203 (549)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------------C---CCHH-HHH-HHHHHHHHHHHhccchhHH
Confidence 6688888777766655555555555555554322 1 1111 122 2223344445566677777
Q ss_pred hHHHHHHHHHHH
Q 013866 174 RFSSAISVLLAV 185 (435)
Q Consensus 174 ~~~s~~~~~~~~ 185 (435)
.+...+..++.+
T Consensus 204 ~~td~iQ~~im~ 215 (549)
T PRK12488 204 TWVQIIKAVLLL 215 (549)
T ss_pred HHHHHHHHHHHH
Confidence 777777754333
No 61
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=98.50 E-value=0.00087 Score=67.12 Aligned_cols=240 Identities=11% Similarity=0.086 Sum_probs=125.4
Q ss_pred CCCCCchHHHHHHHHHHHHhhhh-chHHHHHHhhChHHHHHHHH--HHHHH-HHHHHHHHHHHhhhcCCCCHHHHHHHHh
Q 013866 17 TEKRPSVSGAVFNVATSIIGAGI-MSIPATIKVLGVIPAFVLIV--IIACL-TDISVDFLMRYTNAGETSTYAGVMRESF 92 (435)
Q Consensus 17 ~~~~~s~~~~~~~l~~~~iG~Gi-L~LP~~~~~~G~~~g~i~l~--~~~~~-~~~s~~~l~~~~~~~~~~~y~~l~~~~~ 92 (435)
..|+.+++.....+..+.+|++. ++.|....+.|+........ ..+.+ ...-...+.+..++.+..|.+|+-++-+
T Consensus 38 agr~l~~~~~~~s~~at~~s~~t~~g~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~T~~e~l~~Ry 117 (471)
T TIGR02119 38 GGRSMGGFVLAMTLVATYGSASSFIGGPGIAYNYGLGWVLLAMIQVPTGYFVLGVLGKKFAIISRKYNAITINDVLKARY 117 (471)
T ss_pred eCCcccHHHHHHHHHHHHhhHHHHcCcHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHc
Confidence 47889999999999999998876 47888777778632111110 01111 1111223344456788999999999999
Q ss_pred Chh-HHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCccccchhhhhhcCccccchHHHHHHHHHHHHhccccccccc
Q 013866 93 GRA-GSVAVQLCVMITNLGCLIIFLIIIGDVLCGKQPEGSVHLGVLQEWFGFHWWNTRVFALLFVMVFVMLPLALFRRVG 171 (435)
Q Consensus 93 G~~-~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~ 171 (435)
|++ .+.+..+...+..++....-+...+..+++++ + ++... . +++..++..-......++
T Consensus 118 g~~~~~~~~~i~~i~~~~~~~~~ql~g~g~~l~~~~--------------g---i~~~~-~-iii~~~iv~iYt~~GG~~ 178 (471)
T TIGR02119 118 NNKFLVWLSSISLLVFFFSAMVAQFIGGARLIESLT--------------G---LSYLT-A-LFIFSSSVLIYTTFGGFR 178 (471)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------C---CCHHH-H-HHHHHHHHHHHHHhhhHH
Confidence 955 56777777776666665555555565554322 1 11111 2 222333455566667777
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC-----CCCCCCC---Ccccchh--hhhhhhh-hhhhhhhcccchh
Q 013866 172 SLRFSSAISVLLAVIFVAICSVMAIYAVWEGKSKT-----PKLLPQL---DNHVSVF--DLFTAVP-VIVTAFTFHFNVH 240 (435)
Q Consensus 172 ~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~---~~~~~~~--~~~~~~~-~~~faf~~~~~~~ 240 (435)
...+...+..+..+...+++....... .++.+. ++..|+. ....++. ....++. ...+...+++...
T Consensus 179 av~~td~iQ~~v~~~~~~~~~~~~l~~--~gG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~~ 256 (471)
T TIGR02119 179 AVALTDAIQGIVMFTGTTILLIAVIKA--GGGVEKIMEKLKDIDPNLITPFGGDGGLTKPFVASFWILVGIGVIGLPQTA 256 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCHHHHHHHHHhcCccccCCCCCCcchhhhHHHHHHHHHHHHHhCchHHH
Confidence 777777777654333333222222221 111100 0000100 0001111 1111111 1122223333333
Q ss_pred hhhhcCCCCchhHHHHHHHHHHHHHHHHHHHhHHhHh
Q 013866 241 PIGFEFDKPSDMITAVRISLVICAAIYFSVGLFGYLL 277 (435)
Q Consensus 241 ~i~~~m~~p~~~~~~~~~s~~~~~~~y~~~~~~gy~~ 277 (435)
.-.-..||+++.+|...++..+...++....+.|..+
T Consensus 257 ~R~~aak~~~~a~~~~~~~~~~~~~~~~~~~~~G~~a 293 (471)
T TIGR02119 257 VRCMSYKDSKAMHRAMIIGTIVVGIIMLGMHLAGVLG 293 (471)
T ss_pred HHHHhcCCHHHHhhhHhHHHHHHHHHHHHHHHHHHhh
Confidence 3344566777888888888776666666555555443
No 62
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=98.49 E-value=0.0013 Score=63.00 Aligned_cols=318 Identities=16% Similarity=0.158 Sum_probs=154.8
Q ss_pred HHHHHHHhhhhchHHHHHH-hhC--hHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHhChhHHHHHHHHHH
Q 013866 29 NVATSIIGAGIMSIPATIK-VLG--VIPAFVLIVIIACLTDISVDFLMRYTNAGETSTYAGVMRESFGRAGSVAVQLCVM 105 (435)
Q Consensus 29 ~l~~~~iG~GiL~LP~~~~-~~G--~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~y~~l~~~~~G~~~~~~~~~~~~ 105 (435)
.++.-.+|+|.|-.|-... ++| |..+.+.+++.++..-..... +..+. ..+|+++.+ ..||+.+.+..+.+.
T Consensus 3 ~lFamffGAGNlIfPp~lG~~aG~~~~~a~lgf~ltgV~lpllgl~---av~~~-gG~~~~l~~-~~g~~f~~lf~~~~~ 77 (378)
T TIGR00796 3 MLFALFFGAGNIIFPPMLGLAAGEHVWTAALGFLLTGVGLPLLGLI---ALALV-GGGYDSLSA-RIGKVFGILFTVILY 77 (378)
T ss_pred HHHHHHHhhhHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHh---eeeec-CCCHHHHHH-HhChHHHHHHHHHHH
Confidence 4677889999998886644 555 677788888877777655444 22222 368888855 456777777766666
Q ss_pred HHHH-------HHHHHHHHhhhcccCCCCCCCccccchhhhhhcCccccchHHHHHHHHHHHHhccccccccchhhHHHH
Q 013866 106 ITNL-------GCLIIFLIIIGDVLCGKQPEGSVHLGVLQEWFGFHWWNTRVFALLFVMVFVMLPLALFRRVGSLRFSSA 178 (435)
Q Consensus 106 ~~~~-------g~~~~y~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~l~~~s~ 178 (435)
+..- -...+|-+.+.. ++++. . .+....+ ..++.+-+...-+++.-+....
T Consensus 78 l~iGP~~aiPRtaa~s~e~~i~p----~~~~~-------------~---~~~~l~i--~siiff~i~~~l~~~~~k~~~~ 135 (378)
T TIGR00796 78 LTIGPLFAIPRTATVSFEMGIAP----LLHSP-------------T---SLLALFI--FSLIFFAVVLLLSLNPSKLIDR 135 (378)
T ss_pred HHHHhchhhhHHHHHHHHHHHHh----ccCcc-------------c---chHHHHH--HHHHHHHHHHHHHcCcccHHHH
Confidence 4422 223334433222 22210 0 0000010 1111222211112222233444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcccch-------hhhhhhhhhhhhhhhcccchhhhhh-cCCCCc
Q 013866 179 ISVLLAVIFVAICSVMAIYAVWEGKSKTPKLLPQLDNHVSV-------FDLFTAVPVIVTAFTFHFNVHPIGF-EFDKPS 250 (435)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~faf~~~~~~~~i~~-~m~~p~ 250 (435)
++.+.+...++......+..+.++..+.........+...+ .+.+.+++-..| +...+-.+.+ |+|||+
T Consensus 136 iGk~LTP~lLi~l~~lii~g~~~p~g~~~~~~~~~~~~~~f~~g~l~GY~TmD~laal~f---g~iiv~~i~~~g~~~~~ 212 (378)
T TIGR00796 136 VGKFLTPALLVTLLALIIKALLWPAGPILAASGAYASQQAFSKGFLEGYLTMDALAALVF---GIIVVNAIRSRGVTKPK 212 (378)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcCCCCcCCcccccccccHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhCCCCHH
Confidence 44444444444333344444443221111000001100111 122333333333 3445566665 899998
Q ss_pred h-hHHHHHH---HHHHHHHHHHHHHhHHhHhcCC---C-cchhhhcCCCcCCcchhhhHHHHHHHHHHHHHHHHhhhhhh
Q 013866 251 D-MITAVRI---SLVICAAIYFSVGLFGYLLFGE---S-IMSDILINFDQSSGSAISSLLNDLVRLSYALHLMLVFPMLN 322 (435)
Q Consensus 251 ~-~~~~~~~---s~~~~~~~y~~~~~~gy~~fg~---~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 322 (435)
+ .+++... +......+|...+..|...-++ . ..++++.+..+. .+++....+..+.+.++++.+-....
T Consensus 213 ~~~~~~i~~G~ia~i~l~~vY~~L~~lGa~~~~~~~~~~~~~~~l~~~a~~---~~G~~G~~ll~i~v~lACLtT~iGli 289 (378)
T TIGR00796 213 KITKYTIKAGLIAAVLLAFIYLSLFYLGATSAAAAGDAVNGAQILSAYSQH---LFGSLGSFLLGLIITLACLTTAVGLT 289 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHhhhcccCCcHHHHHHHHHH---HcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 4 4444433 4445556666666666543221 1 122222222221 23345566666778888888877777
Q ss_pred hHHHHHHHHhhccCCcccccccchhhhHHHHHHHHHHHHHhhcCCHHHHHHhhhhhhhhhHHHhhhhHHHHH
Q 013866 323 FSLRANIDELLFSQKPLLAKDTKRFLSITLVLLVFSYTAAITIPDIWYFFQFLGSTSAVCLAFIFPGVIVLR 394 (435)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~p~~~~~~~~~G~~~~~~~~~i~P~~~~~~ 394 (435)
..+.+.+.+... + .+.+.+ .+.....+++++.. .++.++++ ..+.+.+++|..+-+.
T Consensus 290 ~~~a~~f~~~~~-k-----~~y~~~---v~~~~l~s~~ia~~--Gl~~Ii~~----~~PvL~~~YP~~i~li 346 (378)
T TIGR00796 290 TACSEYFHKLVP-K-----LSYKTW---VIVFTLFSFIVANL--GLTQIISI----SIPVLMIIYPLAIVLI 346 (378)
T ss_pred HHHHHHHHHhcC-C-----CCHHHH---HHHHHHHHHHHHHh--CHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 777666665531 1 111111 12233344444432 67777774 4666778888776654
No 63
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=98.48 E-value=0.00025 Score=69.15 Aligned_cols=63 Identities=6% Similarity=-0.126 Sum_probs=48.1
Q ss_pred chhhhhhhhhhhhhhhhcccchhhhhhcCCCCc-hhHHHHHHHHHHHHHHHHHHHhHHhHhcCC
Q 013866 218 SVFDLFTAVPVIVTAFTFHFNVHPIGFEFDKPS-DMITAVRISLVICAAIYFSVGLFGYLLFGE 280 (435)
Q Consensus 218 ~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~-~~~~~~~~s~~~~~~~y~~~~~~gy~~fg~ 280 (435)
+.+.+..++-...+++.|......+.+|-||++ +.+|++..+..+..++=..+-+.-....++
T Consensus 250 ~G~afil~f~~~~wt~sGyDa~~H~aEE~~nAsk~aPrgIi~s~~i~~i~gw~~~I~i~~~i~~ 313 (550)
T KOG1289|consen 250 NGWAFILGFFNPAWTMSGYDAAAHMAEETKNASKAAPRGIISSIAIGFILGWIIIIGIAYTIPD 313 (550)
T ss_pred chHHHHHhhccceeEEeccCchHHHHHHhcchhhhccHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 344566677778899999999999999999999 788998888877777655555444555554
No 64
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=98.48 E-value=0.00028 Score=69.22 Aligned_cols=152 Identities=13% Similarity=0.147 Sum_probs=84.8
Q ss_pred CCCCchHHHHHHHHHHHHhhhh-chHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHhChhH
Q 013866 18 EKRPSVSGAVFNVATSIIGAGI-MSIPATIKVLGVIPAFVLIVIIACLTDISVDFLMRYTNAGETSTYAGVMRESFGRAG 96 (435)
Q Consensus 18 ~~~~s~~~~~~~l~~~~iG~Gi-L~LP~~~~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~y~~l~~~~~G~~~ 96 (435)
.|+.+++...+.+..+.+|++. ++.|....+.|+.. ....+............+.+-.++.+..|..|+-++-+|++.
T Consensus 5 gr~~~~~~~~~s~~at~~s~~t~~G~~g~~y~~G~~~-~~~~~~~~~~~~~~~~~~~~~~r~~~~~T~~e~~~~Ryg~~~ 83 (406)
T PF00474_consen 5 GRSLGWWVVAFSLVATWISAWTFIGFPGFAYSYGISG-LWYAIGYAIGFLLFALFFAPRLRRSGAVTIPEYLEKRYGSKA 83 (406)
T ss_dssp -S---HHHHHHHHHHHHSSHHHHTHHHHHHHHT-GGG-GHHHHHHHHHHHHHHHHTHHHHHHTT--SHHHHHHHHT-HHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcce-eeeccccchhHHHHHHHHHHhhcccchhhhhhhhhhhcCCch
Confidence 5788899999999998888765 57898888888642 333333333333444555666668889999999999999988
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCccccchhhhhhcCccccchHHHHHHHHHHHHhccccccccchhh
Q 013866 97 --SVAVQLCVMITNLGCLIIFLIIIGDVLCGKQPEGSVHLGVLQEWFGFHWWNTRVFALLFVMVFVMLPLALFRRVGSLR 174 (435)
Q Consensus 97 --~~~~~~~~~~~~~g~~~~y~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~l~ 174 (435)
+.+..+...+.........+...+..++.+. + ++... .++ +...+.+-......++...
T Consensus 84 ~~~~~~~i~~i~~~~~~~~~q~~~~~~~~~~~~--------------g---i~~~~-~~~-i~~~i~~iYt~~GGl~av~ 144 (406)
T PF00474_consen 84 LLRILAAIIIIVFMIPYLAAQLVGGGALLSVLF--------------G---IPYNT-AIL-IVGVIVIIYTFFGGLRAVA 144 (406)
T ss_dssp -HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHT--------------T-----HHH-HHH-HHHHHHHHTTCTT------
T ss_pred hhhhhcccccchhhhhhhhccccccccchhhcc--------------c---hhhhH-HHH-HHHHHHHHhhhhhhHhhhh
Confidence 6666655566565666666666666664332 1 12122 222 2333444466667777777
Q ss_pred HHHHHHHHHHHHHHH
Q 013866 175 FSSAISVLLAVIFVA 189 (435)
Q Consensus 175 ~~s~~~~~~~~~~~~ 189 (435)
+...+..++.++..+
T Consensus 145 ~td~iQ~~i~~~~~~ 159 (406)
T PF00474_consen 145 WTDFIQGVIMIIGAI 159 (406)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 777766654433333
No 65
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=98.39 E-value=0.0013 Score=64.63 Aligned_cols=146 Identities=12% Similarity=0.071 Sum_probs=93.2
Q ss_pred CCCCchHHHHHHHHHHHHhhhh-chHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHhCh-h
Q 013866 18 EKRPSVSGAVFNVATSIIGAGI-MSIPATIKVLGVIPAFVLIVIIACLTDISVDFLMRYTNAGETSTYAGVMRESFGR-A 95 (435)
Q Consensus 18 ~~~~s~~~~~~~l~~~~iG~Gi-L~LP~~~~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~y~~l~~~~~G~-~ 95 (435)
.|+.+++...+.+..+.+|++. ++.|....+.|+. +...............++..+..++.+..|..|..++-+|+ .
T Consensus 2 gr~~~~~~~~~s~~at~~s~~t~ig~~~~~y~~G~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~T~~e~l~~Ryg~~~ 80 (407)
T TIGR00813 2 GRSLGGWVVAASLFASYISASQFLGLPGAIYAYGFA-IGFYELGALVLLIILGWLFVPIFINNGAYTMPEYLEKRFGKRI 80 (407)
T ss_pred CCCCCcHHHHHHHHHHHhhHHHHhcCcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHhCchH
Confidence 5778888888888888888765 5788877777853 22222222223333445555555677899999999999998 5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCccccchhhhhhcCccccchHHHHHHHHHHHHhccccccccchhhH
Q 013866 96 GSVAVQLCVMITNLGCLIIFLIIIGDVLCGKQPEGSVHLGVLQEWFGFHWWNTRVFALLFVMVFVMLPLALFRRVGSLRF 175 (435)
Q Consensus 96 ~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~l~~ 175 (435)
.+.+..+...+..+.....-+...+..++.+. + ++.. ..+++..+++.-......++...+
T Consensus 81 ~~~~~~~~~i~~~~~~~~~q~~g~~~il~~~~--------------g---i~~~--~~~ii~~~i~~~Yt~~GG~~av~~ 141 (407)
T TIGR00813 81 LRGLSVLSLILYIFLYMSVDLFSGALLIELIT--------------G---LDLY--LSLLLLGAITILYTVFGGLKAVVW 141 (407)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------------C---chHH--HHHHHHHHHHHHHHHHcchHHHHH
Confidence 77777777777777777777777776664332 1 1111 122223334445566677777777
Q ss_pred HHHHHHHH
Q 013866 176 SSAISVLL 183 (435)
Q Consensus 176 ~s~~~~~~ 183 (435)
...+..++
T Consensus 142 Td~iQ~~i 149 (407)
T TIGR00813 142 TDTIQAVI 149 (407)
T ss_pred HHHHHHHH
Confidence 77777654
No 66
>PRK11017 codB cytosine permease; Provisional
Probab=98.35 E-value=0.0011 Score=64.80 Aligned_cols=206 Identities=14% Similarity=0.115 Sum_probs=104.3
Q ss_pred hhChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCC
Q 013866 48 VLGVIPAFVLIVIIACLTDISVDFLMRYTNAGETSTYAGVMRESFGRAGSVAVQLCVMITNLGCLIIFLIIIGDVLCGKQ 127 (435)
Q Consensus 48 ~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~l~ 127 (435)
..++..++++.++...+...-..+......+. ..++.-+.|..||.+|..+..+...+...+=...-....++.+++..
T Consensus 38 GLs~~~ai~aiilG~~i~~~~~~l~~~~G~k~-G~~~~v~sR~~FG~~Gs~l~~~~~~i~~igW~av~~~~~~~~l~~~~ 116 (404)
T PRK11017 38 GLSFVDFLLAVLIGNLLLGIYTAALGYIGAKT-GLSTHLLARFSFGEKGSWLPSLLLGFTQVGWFGVGVAMFAIPVVKAT 116 (404)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CcCHHHHHHHHhchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 35666677777666665554444444444443 45667889999999999999888887766655554444454443221
Q ss_pred CCCccccchhhhhhcCccccchHHHHHHHHHHHHhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 013866 128 PEGSVHLGVLQEWFGFHWWNTRVFALLFVMVFVMLPLALFRRVGSLRFSSAISVLLAVIFVAICSVMAIYAVWEGKSKTP 207 (435)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (435)
+ .+.....+++..+.......-.|.+++++.++.... ....+........+ .++.+..
T Consensus 117 --------------~---~~~~~~~~i~~~l~~~~~~~G~~~i~~~~~~~~p~~---~~~~~~~~~~~~~~--~~g~~~~ 174 (404)
T PRK11017 117 --------------G---LDINLLIVLSGLLMTVTAYFGISALTILSRIAVPAI---ALLGGYSVWLAVND--VGGLDGL 174 (404)
T ss_pred --------------C---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhc--cCchhhh
Confidence 1 111111222112112222222444444443333222 22111111111111 0111110
Q ss_pred CCCCCCCcccchhhhhhhhhhhhhhhh-cccchhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHHhHHhHhcCC
Q 013866 208 KLLPQLDNHVSVFDLFTAVPVIVTAFT-FHFNVHPIGFEFDKPSDMITAVRISLVICAAIYFSVGLFGYLLFGE 280 (435)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~faf~-~~~~~~~i~~~m~~p~~~~~~~~~s~~~~~~~y~~~~~~gy~~fg~ 280 (435)
...+ .+ +...+..++...+-.+. .-.+.++..+..|+|++.......+..+...+...+|...-...|+
T Consensus 175 ~~~~-~~---~~~~~~~a~~~~~g~~~~~~~~~~DysRy~k~~~~~~~~~~lg~~i~~~~~~~~G~~~a~~~~~ 244 (404)
T PRK11017 175 KAIV-PA---EPLDFSAALTLVVGSFISGGTLTADFVRFGRSAKIAVLATMVAFFLGNSLMFIFGAAGAAVYGQ 244 (404)
T ss_pred hcCC-CC---CcccHHHHHHHHHHHHHHhHhcCCChHhhccCccceeehhHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 0011 11 11234444444333333 3468889999999888655666677777777777777766666665
No 67
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=98.32 E-value=0.0014 Score=63.67 Aligned_cols=314 Identities=18% Similarity=0.157 Sum_probs=160.2
Q ss_pred hHHHHHHHHHHHHhhhhchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHhChhHHHHHHH
Q 013866 23 VSGAVFNVATSIIGAGIMSIPATIKVLGVIPAFVLIVIIACLTDISVDFLMRYTNAGETSTYAGVMRESFGRAGSVAVQL 102 (435)
Q Consensus 23 ~~~~~~~l~~~~iG~GiL~LP~~~~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~y~~l~~~~~G~~~~~~~~~ 102 (435)
|.....++.+-..|+... . .++..++...++..++...-.-+......++ ..++.-+.|..||++|..+..+
T Consensus 7 W~~~~~~v~~~~~G~~l~----~---L~~~~ai~aiilG~~i~~~~~~l~~~~G~~~-Gl~~~v~sR~~FG~~Gs~~~~~ 78 (386)
T TIGR02358 7 WFGAAISIAEIQTGALLA----P---LGLTRGLLAILLGHLVGVLLLSAAGVIGADT-GLSAMGSLKLSLGSKGSVLPSL 78 (386)
T ss_pred HHHHHhhHHHHHHHHHHH----h---ccHHHHHHHHHHHHHHHHHHHHHHHHhhccc-CcCHHHHHHHHHccchhhHHHH
Confidence 445555555666654321 1 5566677777666666655444444444443 4456678999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhcccCCCCCCCccccchhhhhhcCccccchHHHHHHHHHHHHhccccccccchhhHHHHHHHH
Q 013866 103 CVMITNLGCLIIFLIIIGDVLCGKQPEGSVHLGVLQEWFGFHWWNTRVFALLFVMVFVMLPLALFRRVGSLRFSSAISVL 182 (435)
Q Consensus 103 ~~~~~~~g~~~~y~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~l~~~s~~~~~ 182 (435)
...+...|=...-....++.++.+.+.. .+.. .......+. .++..+... ...+.++++..++..
T Consensus 79 l~~i~~igW~~v~~~~gg~~l~~~~~~~----------~~~~---~~~~~~~i~-~~l~~~~~~-~G~~~i~~~~~~~~~ 143 (386)
T TIGR02358 79 LNLLQLVGWTAVMIIVGAKAASLLGGRL----------FGEE---SPMLWILIV-GILVTLWLL-SGPLAFVWLNNWSVW 143 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh----------cCCC---chHHHHHHH-HHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 9988888777777777777775543210 0110 111122211 112222222 234445555555544
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcccchhhhhhhhhhhhhh-hhcccchhhhhhcCCCCchhHHHHHHHHH
Q 013866 183 LAVIFVAICSVMAIYAVWEGKSKTPKLLPQLDNHVSVFDLFTAVPVIVTA-FTFHFNVHPIGFEFDKPSDMITAVRISLV 261 (435)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fa-f~~~~~~~~i~~~m~~p~~~~~~~~~s~~ 261 (435)
+.....+........ +.+.+. ... .+...+ ...+++...-. -......++..+..|+|+|..+....+..
T Consensus 144 ~~~i~~~~~~~~~~~---~~~~~~--~~~-~~~~~s---~~~~~~~~~~~~~swa~~~~DysRy~k~~~~~~~~~~~G~~ 214 (386)
T TIGR02358 144 LLLIATLWLLVVVFS---KADLSE--LWN-RAGDMS---FAVAVELVIAMPLSWLPLIADYTRFARNPRHVFLGTVLGYF 214 (386)
T ss_pred HHHHHHHHHHHHHHh---ccchhh--hcC-CCCCcc---HHHHHHHHHHHHHHHHHHccchhhhcCCCcceehHHHHHHH
Confidence 322222221111111 111111 111 111122 22222222211 12224588999999998888888888999
Q ss_pred HHHHHHHHHHhHHhHhcCCCcchhhhcCCCcCCcchhhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCcccc
Q 013866 262 ICAAIYFSVGLFGYLLFGESIMSDILINFDQSSGSAISSLLNDLVRLSYALHLMLVFPMLNFSLRANIDELLFSQKPLLA 341 (435)
Q Consensus 262 ~~~~~y~~~~~~gy~~fg~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 341 (435)
+...+...+|.....+.++....++..... .....-+...+....+-..+.++....+.+.. ++-
T Consensus 215 i~~~~~~~~G~~~~~a~~~~d~~~~~~~~g----------~~~~~~~~~~l~~~~~n~~N~ys~~l~l~~l~-~~~---- 279 (386)
T TIGR02358 215 IGSCWMYFLGLAVTLATGQTDIISILAGAG----------LGIPALLIILLSTVTTTFMDIYSAAISTGNLL-PRL---- 279 (386)
T ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHhcc----------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-Hhh----
Confidence 999999999888877766532222222110 11122233445555555666666666666555 211
Q ss_pred cccchhhhHHHHHHHHHHHHHh--hcCCHHHHHHhhhhhhhhhHHHhh
Q 013866 342 KDTKRFLSITLVLLVFSYTAAI--TIPDIWYFFQFLGSTSAVCLAFIF 387 (435)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~a~--~~p~~~~~~~~~G~~~~~~~~~i~ 387 (435)
+++|... ....+..+++. ..+.+.+++++.|....+.....+
T Consensus 280 -~~~~~~~---i~~ii~~~l~~~~~~~~f~~FL~~lg~~~~P~~gI~i 323 (386)
T TIGR02358 280 -KVKHLAI---GVGVLGTLIALLFPVDKYENFLLLIGSVFAPLYAVVF 323 (386)
T ss_pred -cchHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122211 11222222222 234567777777777555554444
No 68
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=98.30 E-value=0.0063 Score=61.99 Aligned_cols=146 Identities=14% Similarity=0.087 Sum_probs=83.6
Q ss_pred CCCCCchHHHHHHHHHHHHhh-hhchHHHHHHhhChHHHHHHHHHHHHHHH-HHHHHHHHHhhhcCCCCHHHHHHHHhC-
Q 013866 17 TEKRPSVSGAVFNVATSIIGA-GIMSIPATIKVLGVIPAFVLIVIIACLTD-ISVDFLMRYTNAGETSTYAGVMRESFG- 93 (435)
Q Consensus 17 ~~~~~s~~~~~~~l~~~~iG~-GiL~LP~~~~~~G~~~g~i~l~~~~~~~~-~s~~~l~~~~~~~~~~~y~~l~~~~~G- 93 (435)
..|+.+++...+.+..+.+++ ..++.|....+.|+. +.... +...+.+ ....++.+-.++.+..|..|..++=||
T Consensus 65 aGr~~~~~~~g~si~at~~SaasflG~~G~~y~~G~~-~~~~~-~g~~~~~~i~~~~~a~~lrr~g~~T~~d~l~~Rf~s 142 (549)
T TIGR02711 65 AGGNITGFQNGLAIAGDYMSAASFLGISALVYTSGYD-GLIYS-LGFLVGWPIILFLIAERLRNLGRYTFADVASYRLKQ 142 (549)
T ss_pred eCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH-HHHHH-HHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHcCC
Confidence 377888888777788877765 457899887777853 22222 1122222 223444555566778999998888887
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCccccchhhhhhcCccccchHHHHHHHHHHHHhccccccccchh
Q 013866 94 RAGSVAVQLCVMITNLGCLIIFLIIIGDVLCGKQPEGSVHLGVLQEWFGFHWWNTRVFALLFVMVFVMLPLALFRRVGSL 173 (435)
Q Consensus 94 ~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~l 173 (435)
|..|.+..+...+..+.....-+...+..++.++ + ++ .. ..+++..+++........++..
T Consensus 143 ~~~r~l~ai~~i~~~~~yl~~ql~g~g~il~~~~--------------g---i~-~~-~~iii~~~i~~~Yt~~GGm~av 203 (549)
T TIGR02711 143 RPIRILSACGSLVVVALYLIAQMVGAGKLIELLF--------------G---LN-YH-VAVVLVGILMVMYVLFGGMLAT 203 (549)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------C---CC-HH-HHHHHHHHHHHHHHHhhhhHHH
Confidence 5567776666555544444444455555553322 1 11 11 1122233344445556667776
Q ss_pred hHHHHHHHHH
Q 013866 174 RFSSAISVLL 183 (435)
Q Consensus 174 ~~~s~~~~~~ 183 (435)
.+...+..+.
T Consensus 204 ~~td~iQ~~i 213 (549)
T TIGR02711 204 TWVQIIKAVL 213 (549)
T ss_pred HHHHHHHHHH
Confidence 7777766543
No 69
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=98.22 E-value=0.0026 Score=61.79 Aligned_cols=269 Identities=19% Similarity=0.219 Sum_probs=129.2
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHhhhhchHHHHHHhhC--hHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHH
Q 013866 12 LPSSKTEKRPSVSGAVFNVATSIIGAGIMSIPATIKVLG--VIPAFVLIVIIACLTDISVDFLMRYTNAGETSTYAGVMR 89 (435)
Q Consensus 12 ~~~~~~~~~~s~~~~~~~l~~~~iG~GiL~LP~~~~~~G--~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~y~~l~~ 89 (435)
.+.++++|+=++++-+..=.+.....+...+-...-+.| +.-.++.+.+..++....+.+-.+... .-...|+.+.+
T Consensus 32 ~P~~~~~rtWg~~~~~~~W~~~~~nv~~~~~aa~~~~lGLS~~qallai~vG~~iv~i~m~Lng~~G~-~~gIpFpv~~R 110 (497)
T COG1953 32 APTPAEQRTWGWWNYFALWLGMVHNVPTYMLAAGLFELGLSPWQALLAILVGNLIVAIFMVLNGHAGS-KYGIPFPVLSR 110 (497)
T ss_pred CCCccccCcchHHHHHHHHHHhhccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhccCccc-ccCCCchHHHH
Confidence 344455677777776665555555544433333333333 444444444444444333333222222 23568999999
Q ss_pred HHhChhHHHHHHH---HHHHHHHHHHHH-----HHHhhhcccCC-CCCCCccccchhhhhhcCccccchHHHHHHHHHHH
Q 013866 90 ESFGRAGSVAVQL---CVMITNLGCLII-----FLIIIGDVLCG-KQPEGSVHLGVLQEWFGFHWWNTRVFALLFVMVFV 160 (435)
Q Consensus 90 ~~~G~~~~~~~~~---~~~~~~~g~~~~-----y~~~~~~~l~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (435)
..||-++..+-.+ .+.+.-+|...- -..++...... ..++. .....+. ...-++++...-.
T Consensus 111 aSFGi~Ga~~p~l~R~i~A~~WyGvqty~Gg~av~llL~~i~~~~~~~~~------~~~~lg~----tt~~~i~F~ifW~ 180 (497)
T COG1953 111 ASFGIYGANFPALIRAIVAIVWYGVQTYAGGLAVNLLLGSIFPSLLIPNT------LSPLLGL----TTLELICFFIFWV 180 (497)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhccccccCCc------cccccCC----cHHHHHHHHHHHH
Confidence 9999766543333 333322322211 11111111111 00100 0011111 1222333333333
Q ss_pred HhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCC-C-CCcccchhhhhhhhhhhhhhhh-ccc
Q 013866 161 MLPLALFRRVGSLRFSSAISVLLAVIFVAICSVMAIYAVWEGKSKTPKLLP-Q-LDNHVSVFDLFTAVPVIVTAFT-FHF 237 (435)
Q Consensus 161 ~~pl~~~~~~~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~faf~-~~~ 237 (435)
+-.+...+.+++++++-.++-.+..+.+...+++...+. ++.....+.| . .+....++.+.......+-.|. ...
T Consensus 181 l~~l~~~~g~~~Ir~~~~~a~p~~~~~~~gl~Iw~~~~a--~g~~~~~~~p~~~~~~~~~~w~~~~~~~~~v~~~Atl~l 258 (497)
T COG1953 181 LQLLVLFKGMESIRKFETWAGPLVYIAMLGLAIWALVKA--GGSSILGELPAGTVSGSNSSWAFLAGIAAWVGFWATLAL 258 (497)
T ss_pred HHHHHHhcCHHHHHHHHHHhchHHHHHHHHHHHHHHHhc--CCcCccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHhc
Confidence 444556677888888877776554444443333333321 1111111222 1 1222233344444433333333 445
Q ss_pred chhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHH----hHHhHhcCCCcc--hhhhcCCCcC
Q 013866 238 NVHPIGFEFDKPSDMITAVRISLVICAAIYFSVG----LFGYLLFGESIM--SDILINFDQS 293 (435)
Q Consensus 238 ~~~~i~~~m~~p~~~~~~~~~s~~~~~~~y~~~~----~~gy~~fg~~~~--~~i~~~~~~~ 293 (435)
|+|+..+.-|+|++-.+.-.++..+.+.+..++| ..++..||+..- .++...+++.
T Consensus 259 N~~DFsRfa~s~~~~~~gq~~gLPv~~~l~~ligvv~tsa~~~lyG~~~w~P~di~~~~~~~ 320 (497)
T COG1953 259 NIPDFTRFAKSQKAQIWGQLVGLPVNFALFSLIGVVVTSASYILYGETIWDPLDIVARFLSG 320 (497)
T ss_pred CCchhhcccCChhhhhhccchhhhHHHHHHHHHHhhHHHHHHHhhCcccCCHHHHHHHhccc
Confidence 8999999999988555555556666666655554 467778898744 4566766654
No 70
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=98.08 E-value=0.0047 Score=59.90 Aligned_cols=85 Identities=15% Similarity=0.167 Sum_probs=58.8
Q ss_pred CCCCchHHHHHHHHHHHHhhh-hchHHHHHHhhChHHHHHHHHHHHHHHHHH----HHHHHHHhhhcCCCCH-----HHH
Q 013866 18 EKRPSVSGAVFNVATSIIGAG-IMSIPATIKVLGVIPAFVLIVIIACLTDIS----VDFLMRYTNAGETSTY-----AGV 87 (435)
Q Consensus 18 ~~~~s~~~~~~~l~~~~iG~G-iL~LP~~~~~~G~~~g~i~l~~~~~~~~~s----~~~l~~~~~~~~~~~y-----~~l 87 (435)
+++.|-+|+.+....+.+|.| ++..|.+.+..| +.++..+-+.+++...+ ..+-.+..++++..+| .++
T Consensus 44 ~g~iS~fqA~~~ala~~VG~GnI~Gva~Ai~~GG-pGAvFWMWI~allGm~~~~~e~~L~~~yr~~~~~g~~~GGP~yyi 122 (425)
T TIGR00835 44 KGGVSSFQALFTSLAARVGIGNIVGVATAIAIGG-PGAVFWMWVTAFIGMATKFVESTLAQKYRERDADGVFRGGPMYYI 122 (425)
T ss_pred CCCccHHHHHHHHHHHHHhhhHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCEecChHHHH
Confidence 456999999999999999998 999999987776 55633333333333333 3333333334444447 778
Q ss_pred HHHHhChhHHHHHHHH
Q 013866 88 MRESFGRAGSVAVQLC 103 (435)
Q Consensus 88 ~~~~~G~~~~~~~~~~ 103 (435)
-+...|||.+.+..++
T Consensus 123 ~~gl~~k~lg~lfa~~ 138 (425)
T TIGR00835 123 KKGLGMRWLAVLFAVF 138 (425)
T ss_pred HHHhCccHHHHHHHHH
Confidence 7777889888887777
No 71
>PRK09395 actP acetate permease; Provisional
Probab=98.02 E-value=0.023 Score=57.99 Aligned_cols=146 Identities=14% Similarity=0.063 Sum_probs=84.4
Q ss_pred CCCCCchHHHHHHHHHHHHhhhh-chHHHHHHhhChHHHHHHHHHHHHHHH-HHHHHHHHHhhhcCCCCHHHHHHHHhC-
Q 013866 17 TEKRPSVSGAVFNVATSIIGAGI-MSIPATIKVLGVIPAFVLIVIIACLTD-ISVDFLMRYTNAGETSTYAGVMRESFG- 93 (435)
Q Consensus 17 ~~~~~s~~~~~~~l~~~~iG~Gi-L~LP~~~~~~G~~~g~i~l~~~~~~~~-~s~~~l~~~~~~~~~~~y~~l~~~~~G- 93 (435)
..|+.+++...+.+..+.++++. ++.|......|+.. .... +...+.. ....++.+-.++.+..|+.|+.++=||
T Consensus 67 agr~l~~~~~~~si~At~~Sa~tfiG~~g~~y~~G~~~-~~~~-~~~~~g~~~~~~~~~~~~r~~g~~T~~d~l~~Rygs 144 (551)
T PRK09395 67 AGGGITGFQNGLAIAGDYMSAASFLGISALVFTSGYDG-LIYS-IGFLVGWPIILFLIAERLRNLGKYTFADVASYRLKQ 144 (551)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHhCHHH-HHHH-HHHHHHHHHHHHHHHHHHhhCCCccHHHHHHHHcCC
Confidence 47888888888888888888765 58998877778642 2211 1122221 122334454556778999999998888
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCccccchhhhhhcCccccchHHHHHHHHHHHHhccccccccchh
Q 013866 94 RAGSVAVQLCVMITNLGCLIIFLIIIGDVLCGKQPEGSVHLGVLQEWFGFHWWNTRVFALLFVMVFVMLPLALFRRVGSL 173 (435)
Q Consensus 94 ~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~l 173 (435)
|+.|.+..+...+..+.....-+.-.+..++.+. + ++.. ..+++..++..-......++..
T Consensus 145 ~~~r~l~av~~iv~~~~yl~~q~~g~g~il~~~~--------------g---i~~~--~~ili~~~i~~iYt~~GGm~av 205 (551)
T PRK09395 145 GPIRTLSACGSLVVVALYLIAQMVGAGKLIQLLF--------------G---LNYH--VAVVLVGVLMMVYVLFGGMLAT 205 (551)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------------C---CCHH--HHHHHHHHHHHHHHhhcchHHH
Confidence 5577777666555444444444444444443221 1 1111 1122233344445566667776
Q ss_pred hHHHHHHHHH
Q 013866 174 RFSSAISVLL 183 (435)
Q Consensus 174 ~~~s~~~~~~ 183 (435)
.+...+..++
T Consensus 206 ~~TD~iQ~ii 215 (551)
T PRK09395 206 TWVQIIKAVL 215 (551)
T ss_pred HHHHHHHHHH
Confidence 7777766543
No 72
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=97.77 E-value=0.057 Score=54.31 Aligned_cols=147 Identities=14% Similarity=0.194 Sum_probs=77.3
Q ss_pred CCCCCchHHHHHHHHHHHHhhhh-chHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHH----Hhh-hcCCCCHHHHHHH
Q 013866 17 TEKRPSVSGAVFNVATSIIGAGI-MSIPATIKVLGVIPAFVLIVIIACLTDISVDFLMR----YTN-AGETSTYAGVMRE 90 (435)
Q Consensus 17 ~~~~~s~~~~~~~l~~~~iG~Gi-L~LP~~~~~~G~~~g~i~l~~~~~~~~~s~~~l~~----~~~-~~~~~~y~~l~~~ 90 (435)
..|+.+++-..+.+..+.+++.. ++.|....+.|+..... .....+........+.+ ..+ +++..|..|+-++
T Consensus 34 agr~~~~~~~~~s~~At~~s~~~~~G~~g~~y~~G~~~~~~-~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~T~~e~l~~ 112 (487)
T TIGR02121 34 GGRSLGPFVTALSAGASDMSGWLLMGLPGALYVTGLSELWI-AIGLTIGAYINWKFVAPRLRVYTEAAHNSITLPDFFEN 112 (487)
T ss_pred eCCcccHHHHHHHHHHHHHhHHHHHhhHHHHHHhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHhhcCCccHHHHHHH
Confidence 37888999888888888777654 56887777778643222 11111111222233332 222 5678899999999
Q ss_pred HhChh---HHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCccccchhhhhhcCccccchHHHHHHHHHHHHhccccc
Q 013866 91 SFGRA---GSVAVQLCVMITNLGCLIIFLIIIGDVLCGKQPEGSVHLGVLQEWFGFHWWNTRVFALLFVMVFVMLPLALF 167 (435)
Q Consensus 91 ~~G~~---~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~ 167 (435)
=||++ .+.+..+...+....-...-+...+..++.+. + ++.. ..+++..++..-....
T Consensus 113 Ryg~~~~~~~~~~ai~~~~~~~~~~~~~l~~~~~~l~~~~--------------g---i~~~--~~iii~~~i~~~Yt~~ 173 (487)
T TIGR02121 113 RFNDKSRLLRIISALIILVFFTIYTSSGLVAGGKLFESTF--------------G---LDYK--TGLLIGALIIVIYTFF 173 (487)
T ss_pred HhCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------------C---ccHH--HHHHHHHHHHHHHHHh
Confidence 99954 33333333333322223333333444443221 1 1111 1222233345555666
Q ss_pred cccchhhHHHHHHHHH
Q 013866 168 RRVGSLRFSSAISVLL 183 (435)
Q Consensus 168 ~~~~~l~~~s~~~~~~ 183 (435)
..++...+...+..++
T Consensus 174 GGl~av~~TD~iQ~~i 189 (487)
T TIGR02121 174 GGFLAVSWTDFVQGLL 189 (487)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 6677777777776543
No 73
>PRK10484 putative transporter; Provisional
Probab=97.76 E-value=0.062 Score=54.58 Aligned_cols=90 Identities=9% Similarity=0.019 Sum_probs=57.9
Q ss_pred CCCCCchHHHHHHHHHHHHhhhh-chHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHhChh
Q 013866 17 TEKRPSVSGAVFNVATSIIGAGI-MSIPATIKVLGVIPAFVLIVIIACLTDISVDFLMRYTNAGETSTYAGVMRESFGRA 95 (435)
Q Consensus 17 ~~~~~s~~~~~~~l~~~~iG~Gi-L~LP~~~~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~y~~l~~~~~G~~ 95 (435)
..|+.+++-..+.+..+.++++. ++.|....+.|+.... ......+........+.+-.++.+..|..|+-|+-||++
T Consensus 36 agR~l~~~~~~~sl~AT~~Sa~tflG~~g~~y~~G~~~~~-~~~~~~~~~~~~~~~~~p~~~r~~~~T~~e~l~~Ryg~~ 114 (523)
T PRK10484 36 AGRSLTGPVIAGSLLLTNLSTEQLVGLNGQAYASGMSVMA-WEVTAAIALIILALIFLPRYLKSGITTIPDFLEERYDKT 114 (523)
T ss_pred cCCCCchHHHHHHHHHHHhhHHHHhcchHHHHHhCHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHhcCch
Confidence 48889999888888888777766 5788777677854311 111111111122333344334667889999999999988
Q ss_pred HHHHHHHHHHHH
Q 013866 96 GSVAVQLCVMIT 107 (435)
Q Consensus 96 ~~~~~~~~~~~~ 107 (435)
.+.+......+.
T Consensus 115 ~~~~~~~~~~i~ 126 (523)
T PRK10484 115 TRRIVSILFLIG 126 (523)
T ss_pred hHHHHHHHHHHH
Confidence 887766654443
No 74
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=97.75 E-value=0.068 Score=54.67 Aligned_cols=146 Identities=10% Similarity=0.104 Sum_probs=85.9
Q ss_pred CCCCCchHHHHHHHHHHHHhhh-hchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHhChh
Q 013866 17 TEKRPSVSGAVFNVATSIIGAG-IMSIPATIKVLGVIPAFVLIVIIACLTDISVDFLMRYTNAGETSTYAGVMRESFGRA 95 (435)
Q Consensus 17 ~~~~~s~~~~~~~l~~~~iG~G-iL~LP~~~~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~y~~l~~~~~G~~ 95 (435)
..|+.+++...+.+..+.++++ .++.|......|+..-...+ ...........++.+-.++.+..|..|.-++=||++
T Consensus 30 aGr~l~~~~~~~s~~At~~Sa~tflG~~g~~y~~G~~~~~~~~-g~~~~~~~~~~~~~p~~rr~~~~T~~e~l~~Rf~s~ 108 (552)
T TIGR03648 30 AGRGVPPVANGMATAADWMSAASFISMAGLIAFLGYDGLAYLM-GWTGGYVLLALLLAPYLRKFGKYTVPDFIGDRYYSN 108 (552)
T ss_pred eCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhChHHHHHHH-HHHHHHHHHHHHHHHHHHHCCCccHHHHHHHHhCCC
Confidence 4889999999998988888765 46788777777753211111 111111223355566567778889999888888854
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCccccchhhhhhcCccccchHHHHHHHHHHHHhccccccccchhh
Q 013866 96 -GSVAVQLCVMITNLGCLIIFLIIIGDVLCGKQPEGSVHLGVLQEWFGFHWWNTRVFALLFVMVFVMLPLALFRRVGSLR 174 (435)
Q Consensus 96 -~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~l~ 174 (435)
.+.+..+...+..+.....-+...+..++.+. + ++.. ..+ ++..++..-......++...
T Consensus 109 ~~~~~~~i~~~~~~~~~l~~ql~~~~~~l~~~~--------------g---i~~~-~~i-ii~~~i~~iYt~~GG~~aV~ 169 (552)
T TIGR03648 109 TARLVAVICAIFISFTYVAGQMRGVGVVFSRFL--------------E---VDFE-TGV-FIGMAIVFFYAVLGGMKGVT 169 (552)
T ss_pred ceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------C---CCHH-HHH-HHHHHHHHHHHHhhhHHHHH
Confidence 56666666555555544444445555553322 1 1111 122 22233455556667777777
Q ss_pred HHHHHHHH
Q 013866 175 FSSAISVL 182 (435)
Q Consensus 175 ~~s~~~~~ 182 (435)
+...+.-+
T Consensus 170 ~TD~iQ~i 177 (552)
T TIGR03648 170 WTQVAQYI 177 (552)
T ss_pred HHHHHHHH
Confidence 77777654
No 75
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=97.71 E-value=0.00025 Score=70.41 Aligned_cols=112 Identities=20% Similarity=0.098 Sum_probs=71.1
Q ss_pred CCCCCCCchHHHHHHHHHHHHhhhhchHHHHHH--hhChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHh
Q 013866 15 SKTEKRPSVSGAVFNVATSIIGAGIMSIPATIK--VLGVIPAFVLIVIIACLTDISVDFLMRYTNAGETSTYAGVMRESF 92 (435)
Q Consensus 15 ~~~~~~~s~~~~~~~l~~~~iG~GiL~LP~~~~--~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~y~~l~~~~~ 92 (435)
++++|+.+.++.+..-.+..+....+.+-.... ..++..+++..++..++...-.-+......+++ .++.-++|..|
T Consensus 3 P~~~R~~~~~~~~~iW~~~~~~~~~~~~G~~~~~~gL~~~~ailai~~G~~l~~i~~~~~~~~G~r~G-l~~~v~sR~~F 81 (440)
T PF02133_consen 3 PESERTWSPWSLFWIWFGANISIATFVTGALGVALGLSFWQAILAILIGNLLGAILVALMGIIGPRTG-LPTMVLSRASF 81 (440)
T ss_dssp --GG--B-HHHHHHHHCHHH-SCHHH-HHHHHHCCCS-HHHHHHHHHHHHHHHHHHHHHHTHHHHCC----HHHHTTTTS
T ss_pred chhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHhcccccccC-CCchhcchhcc
Confidence 345677777777777777777766655544442 245666777777777766665555555554544 45557789999
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCC
Q 013866 93 GRAGSVAVQLCVMITNLGCLIIFLIIIGDVLCGKQ 127 (435)
Q Consensus 93 G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~l~ 127 (435)
|++|..+..+...+...|=...-....++.+..+.
T Consensus 82 G~~Gs~l~~~l~~i~~igW~av~~~~~g~al~~~~ 116 (440)
T PF02133_consen 82 GYRGSKLPSLLRAISAIGWFAVNTWLGGQALAALL 116 (440)
T ss_dssp -TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999988888877777777787775443
No 76
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=97.69 E-value=0.016 Score=55.82 Aligned_cols=247 Identities=14% Similarity=0.113 Sum_probs=107.5
Q ss_pred CCCCCCchHHHHHHHHHHHHhhhhc-hHHHHHHhhChHHHH----HHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHH
Q 013866 16 KTEKRPSVSGAVFNVATSIIGAGIM-SIPATIKVLGVIPAF----VLIVIIACLTDISVDFLMRYTNAGETSTYAGVMRE 90 (435)
Q Consensus 16 ~~~~~~s~~~~~~~l~~~~iG~GiL-~LP~~~~~~G~~~g~----i~l~~~~~~~~~s~~~l~~~~~~~~~~~y~~l~~~ 90 (435)
+|++-.|-.+-+...+++.+|.|-. -.||...+.|-..-+ +.++..|.-....-..+.|..+++...+|..+.+
T Consensus 4 ~re~w~SrlGFILAa~GsAVGLGNiWrFPy~~~~nGGgAFll~yli~~l~~GiPlli~Ef~iGr~~~~~~~~a~~~l~~- 82 (439)
T COG0733 4 KREQWSSRLGFILAAAGSAVGLGNIWRFPYMAGENGGGAFLLPYLIFLLLVGIPLLLAEFAIGRRGRKNAVGAFRKLAP- 82 (439)
T ss_pred cccchhhHHHHHHHHHHHHhcccccccCCeEeeecCcchHHHHHHHHHHHHhHHHHHHHHHhhhhcCCChhHHHHHhcc-
Confidence 3445567778888899999998864 689988877633222 2222222222222233344444555667766665
Q ss_pred HhChhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCC----CCCccccchhhhhhcCccccchHHHHHHHHHHHHhcccc
Q 013866 91 SFGRAGSVAVQLCVMITNLGCLIIFLIIIGDVLCGKQ----PEGSVHLGVLQEWFGFHWWNTRVFALLFVMVFVMLPLAL 166 (435)
Q Consensus 91 ~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~l~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~ 166 (435)
+|++++ .........+..+.-|..+.|=.+..+. .+..........++....-+............++.-+..
T Consensus 83 --~~~~~~-~G~~gv~~~~~i~sfYsvI~GWil~Y~~~s~tg~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~lt~~iv 159 (439)
T COG0733 83 --KKKWEW-IGWFGVLGGFLILSFYSVIGGWILSYLVKSLTGALPDTGEQFAQLFGQTISNPGLAVIFHLLFLVLTALIV 159 (439)
T ss_pred --Cccchh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH
Confidence 222222 2222233334444445555552221111 010000001111111100001100010011111222222
Q ss_pred ccccch-hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCC--CCCCCCCcccchhhhhhhhhhhhhhhh-cccchhh
Q 013866 167 FRRVGS-LRFSSAISVLLAVIFVAICSVMAIYAVWEGKS-KTP--KLLPQLDNHVSVFDLFTAVPVIVTAFT-FHFNVHP 241 (435)
Q Consensus 167 ~~~~~~-l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~faf~-~~~~~~~ 241 (435)
.|.+++ +...+.+-+....++.++ ..++....++. +.- -..|+.+.-.+..-...+++-..|+.+ |...+.+
T Consensus 160 ~~GV~~GIEk~~kimMP~Lfvl~i~---Lvi~~~tLpGA~~G~~f~l~PD~s~l~~~~v~~~AlGQ~FFsLSlG~g~mit 236 (439)
T COG0733 160 SRGVKKGIEKANKIMMPLLFVLFII---LVIRAVTLPGAMEGLKFLFKPDFSKLTDPKVWLAALGQAFFSLSLGFGIMIT 236 (439)
T ss_pred HHhHHhhHHHHHHHHHHHHHHHHHH---HHHHHHcCccHHHHHHHHhcCCHHHcCchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 333333 344444333322222222 22333332221 111 112333322334456677777778776 5556667
Q ss_pred hhhcCCCCchhHHHHHHHHHHHHHHHHH
Q 013866 242 IGFEFDKPSDMITAVRISLVICAAIYFS 269 (435)
Q Consensus 242 i~~~m~~p~~~~~~~~~s~~~~~~~y~~ 269 (435)
..+.++|+++..+........-+..=++
T Consensus 237 YsSYL~k~~~l~~sa~~v~~~n~~~s~l 264 (439)
T COG0733 237 YSSYLSKKSDLVSSALSIVLLNTLISLL 264 (439)
T ss_pred HHhhcCcccchhhhHHHHHHHHHHHHHH
Confidence 7788888887776655444444444333
No 77
>PRK00701 manganese transport protein MntH; Reviewed
Probab=97.66 E-value=0.073 Score=52.52 Aligned_cols=43 Identities=12% Similarity=0.020 Sum_probs=29.7
Q ss_pred CCCHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 013866 81 TSTYAGVMRESFGRAGSVAVQLCVMITNLGCLIIFLIIIGDVL 123 (435)
Q Consensus 81 ~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l 123 (435)
.++..|+.++-+||+..++..+...+.+.+....-..-.+..+
T Consensus 93 G~~l~~~ir~~~~~~~~~~~~~~~~l~~~~~~~~e~~G~a~al 135 (439)
T PRK00701 93 GRDLAQACRDRYPRPVVWFLWIQAELAIMATDLAEVIGAAIAL 135 (439)
T ss_pred CCCHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678899999999998887766666665555555554444333
No 78
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=97.65 E-value=0.0049 Score=57.73 Aligned_cols=104 Identities=13% Similarity=0.166 Sum_probs=92.1
Q ss_pred CchHHHHHHHHHHHHhhhhchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHH-HhhhcCCCCHHHHHHHHhChhHHHH
Q 013866 21 PSVSGAVFNVATSIIGAGIMSIPATIKVLGVIPAFVLIVIIACLTDISVDFLMR-YTNAGETSTYAGVMRESFGRAGSVA 99 (435)
Q Consensus 21 ~s~~~~~~~l~~~~iG~GiL~LP~~~~~~G~~~g~i~l~~~~~~~~~s~~~l~~-~~~~~~~~~y~~l~~~~~G~~~~~~ 99 (435)
.+.+..+.+-..++-|+|...=|-.-.+-||.++.+..++.+++.--...+..- .+-+++.++.+|++++..||+++.+
T Consensus 52 ~~~~vlfghhf~sIAGaGPI~GPi~aa~~GwlPa~lWI~~G~if~GaVHD~~sl~~SvR~~G~Si~~i~~~~lG~~~~~l 131 (376)
T PF02554_consen 52 TNKWVLFGHHFASIAGAGPIVGPILAAQFGWLPALLWIVFGCIFAGAVHDYGSLMASVRHKGKSIGEIAGKYLGKRAKKL 131 (376)
T ss_pred CchHHhhHHHHHHHhccccchHHHHHHHhcchHHHHHHHHccHHHHHHHHHHHHhhhhcCCCccHHHHHHHHHHHHHHHH
Confidence 467788999999999999999998889999999999988888888777766655 4568899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccC
Q 013866 100 VQLCVMITNLGCLIIFLIIIGDVLC 124 (435)
Q Consensus 100 ~~~~~~~~~~g~~~~y~~~~~~~l~ 124 (435)
+.+..++.+.....++....++.+.
T Consensus 132 f~~f~~~~lilV~avF~~v~a~~~~ 156 (376)
T PF02554_consen 132 FLIFIFFLLILVIAVFADVVANTFV 156 (376)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999988887774
No 79
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=97.63 E-value=0.095 Score=52.93 Aligned_cols=148 Identities=9% Similarity=0.095 Sum_probs=81.2
Q ss_pred CCCCCchHHHHHHHHHHHHhhhh-chHHHHHHhhChHHHHHHHHHHHHHH-HHHHHHHH-----HHhhhcCCCCHHHHHH
Q 013866 17 TEKRPSVSGAVFNVATSIIGAGI-MSIPATIKVLGVIPAFVLIVIIACLT-DISVDFLM-----RYTNAGETSTYAGVMR 89 (435)
Q Consensus 17 ~~~~~s~~~~~~~l~~~~iG~Gi-L~LP~~~~~~G~~~g~i~l~~~~~~~-~~s~~~l~-----~~~~~~~~~~y~~l~~ 89 (435)
..|+.+++-..+.+..+.+++.. ++.|....+.|+..... .+...+. ......+. ...++.+..|..|.-+
T Consensus 38 agr~l~~~~~~~s~~At~~Sa~t~iG~~g~~y~~G~~~~~~--~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~T~~e~l~ 115 (502)
T PRK15419 38 GGRSLGPFVTALSAGASDMSGWLLMGLPGAVFLSGISESWI--AIGLTLGAWINWKLVAGRLRVHTEYNNNALTLPDYFT 115 (502)
T ss_pred eCCCccHHHHHHHHHHHHHHHHHHHHhhHHHHHcCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhcCceeHHHHHH
Confidence 48889999999988888888777 47898877888643111 1111111 11111211 1223457789999999
Q ss_pred HHhChh---HHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCccccchhhhhhcCccccchHHHHHHHHHHHHhcccc
Q 013866 90 ESFGRA---GSVAVQLCVMITNLGCLIIFLIIIGDVLCGKQPEGSVHLGVLQEWFGFHWWNTRVFALLFVMVFVMLPLAL 166 (435)
Q Consensus 90 ~~~G~~---~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~ 166 (435)
+=||++ .+.+..+...+....-+..-+...+..++.++ + ++.. ..+++..++......
T Consensus 116 ~Ry~~~~~~~~~~~~i~~~~~~~~~~~~ql~~~~~~l~~~~--------------g---i~~~--~~iii~~~iv~iYt~ 176 (502)
T PRK15419 116 GRFEDKSRILRIISALVILLFFTIYCASGIVAGARLFESTF--------------G---MSYE--TALWAGAAATILYTF 176 (502)
T ss_pred HHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------------C---CCHH--HHHHHHHHHHHHHHH
Confidence 999854 34344444444333333333333444443222 1 1111 122233345555666
Q ss_pred ccccchhhHHHHHHHHHHH
Q 013866 167 FRRVGSLRFSSAISVLLAV 185 (435)
Q Consensus 167 ~~~~~~l~~~s~~~~~~~~ 185 (435)
...++...+...+..++.+
T Consensus 177 ~GGl~aV~~TD~iQ~~imi 195 (502)
T PRK15419 177 IGGFLAVSWTDTVQASLMI 195 (502)
T ss_pred hhhHHHHHHHHHHHHHHHH
Confidence 7777777777777765433
No 80
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=97.53 E-value=0.1 Score=50.68 Aligned_cols=85 Identities=15% Similarity=0.145 Sum_probs=56.1
Q ss_pred ccchhhhHHHHHHHHHHHHHhhcCCHHHHHHhhhhhhhhhHHHhhhhHHHHHhcCC-----CCchhhhHHHHHHHHHHHH
Q 013866 343 DTKRFLSITLVLLVFSYTAAITIPDIWYFFQFLGSTSAVCLAFIFPGVIVLRDVHG-----ISTTRDRIIATVMIVLAVV 417 (435)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~a~~~p~~~~~~~~~G~~~~~~~~~i~P~~~~~~~~~~-----~~~~~~~~~~~~~~~~g~v 417 (435)
++.|+...+.+..+++.++.+...+...++.+++.+.+..+-+..++++.+..+|+ +.++|.++..|.+.++-..
T Consensus 323 ~~~r~~i~~~~~~ip~~~i~i~~g~~~~lL~~sqvl~~~~lP~~~~~ll~~~~~k~~mg~~~~~~~~~~~~~~v~~~i~~ 402 (416)
T COG1914 323 LWRRRLITRTFAIVPGLAIIILFGDPARLLVFSQVLLSVILPFALIPLLLLTSDKKLMGDYKNPRWLTVLGWIVVILIVA 402 (416)
T ss_pred hHhhHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhhhcccchHHHHHHHHHHHHHHHH
Confidence 45555555655555655555554488899999999988777777777777765543 3456677777777766666
Q ss_pred HHHHHhHHHH
Q 013866 418 TSTIAISTNI 427 (435)
Q Consensus 418 ~~v~g~~~~i 427 (435)
..+.-.+...
T Consensus 403 L~i~li~~~~ 412 (416)
T COG1914 403 LNIILLVGTL 412 (416)
T ss_pred HHHHHHHHHH
Confidence 6655555443
No 81
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=97.36 E-value=0.16 Score=49.16 Aligned_cols=217 Identities=12% Similarity=0.148 Sum_probs=111.8
Q ss_pred hhchHHHHHHhhChHHHHHHHHHHHHHHHHHH--HHHHHHhhhcCCCCHHHHHHHHh-ChhHHHHHHHHHHHHHHHHHHH
Q 013866 38 GIMSIPATIKVLGVIPAFVLIVIIACLTDISV--DFLMRYTNAGETSTYAGVMRESF-GRAGSVAVQLCVMITNLGCLII 114 (435)
Q Consensus 38 GiL~LP~~~~~~G~~~g~i~l~~~~~~~~~s~--~~l~~~~~~~~~~~y~~l~~~~~-G~~~~~~~~~~~~~~~~g~~~~ 114 (435)
..|.++......|+ .|.+-. +|+..-|.. .++.+-.|+-+..|.+|...+=+ -++.|++..+...+..+...+.
T Consensus 61 SflGiag~I~~~GY-dG~~Y~--iG~~~Gy~i~~fL~A~~LRk~GkyT~aD~~a~Ry~~~~~R~~aa~~ti~vs~~Ylia 137 (529)
T COG4147 61 SFLGIAGLIFISGY-DGLIYS--IGWTGGYPILLFLIAEYLRKLGKYTFADFIADRYKSNPARLLAAIGTIIVSFLYLIA 137 (529)
T ss_pred hhhchhHhhhhccc-chHHHH--HHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHhcchhhHHHHHHHHHHHHHHHHH
Confidence 35567766666664 233322 222222222 33445567778889999755444 4777777776666655555555
Q ss_pred HHHhhhcccCCCCCCCccccchhhhhhcCccccchHHHHHHHHHHHHhccccccccchhhHHHHHHHHHHHHHHHHHHHH
Q 013866 115 FLIIIGDVLCGKQPEGSVHLGVLQEWFGFHWWNTRVFALLFVMVFVMLPLALFRRVGSLRFSSAISVLLAVIFVAICSVM 194 (435)
Q Consensus 115 y~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~l~~~s~~~~~~~~~~~~~~~~~ 194 (435)
-+.-.|..++.+++ - +.. .-+++..+++........++...|.....-+..+...++..+.
T Consensus 138 QmvGaG~li~~l~g--------------v---~~~--vgv~ig~ilm~~Yvv~GGM~atTW~Qi~qavlLi~a~~i~ai~ 198 (529)
T COG4147 138 QMVGAGLLISLLLG--------------V---PYH--VGVVIGGILMMVYVVLGGMKATTWVQIIQAVLLIVAALIMAIM 198 (529)
T ss_pred HHHhhHHHHHHHhC--------------C---Cce--eehhhHhHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 55555555543332 1 111 1112233344455566777777777776654333222222222
Q ss_pred HHHHHhcCCCC---------CCCCCCC--CCcccchhhhhhhhhhhhhhhhcccchhhhh-hcCCCCc--hhHHHHHHHH
Q 013866 195 AIYAVWEGKSK---------TPKLLPQ--LDNHVSVFDLFTAVPVIVTAFTFHFNVHPIG-FEFDKPS--DMITAVRISL 260 (435)
Q Consensus 195 ~~~~~~~~~~~---------~~~~~~~--~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~-~~m~~p~--~~~~~~~~s~ 260 (435)
...+.. ++.. ++.+.++ .++.....+-.+.++...--..|...+|.+. +-..-|+ +.|+.+.++.
T Consensus 199 i~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~pGl~~~~~i~~isl~~aLm~GTAgLPHil~RFfTvp~~k~AR~Sv~wA~ 277 (529)
T COG4147 199 IMWKLG-GNPNPLFAEAVTVHPKDDGSDIMEPGLLYKDPIDFISLGFALMVGTAGLPHILMRFFTVPDAKEARKSVFWAT 277 (529)
T ss_pred HHHHHc-CCcchHHHHHhhcCcccCcccccCCCCcccCHHHHHHHHHHHHHccCCCCeEEEEEEecCcHHHHHHHHHHHH
Confidence 223321 1111 1110010 0000111233344444444444666777664 4444555 7899999999
Q ss_pred HHHHHHHHHHHhHHhHh
Q 013866 261 VICAAIYFSVGLFGYLL 277 (435)
Q Consensus 261 ~~~~~~y~~~~~~gy~~ 277 (435)
.....+|+..-+.|+.+
T Consensus 278 ~fIg~fYi~~~~ig~~A 294 (529)
T COG4147 278 GFIGIFYILTPIIGAGA 294 (529)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999987777663
No 82
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]
Probab=97.21 E-value=0.033 Score=54.70 Aligned_cols=104 Identities=20% Similarity=0.237 Sum_probs=91.7
Q ss_pred CchHHHHHHHHHHHHhhhhchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHH-HhhhcCCCCHHHHHHHHhChhHHHH
Q 013866 21 PSVSGAVFNVATSIIGAGIMSIPATIKVLGVIPAFVLIVIIACLTDISVDFLMR-YTNAGETSTYAGVMRESFGRAGSVA 99 (435)
Q Consensus 21 ~s~~~~~~~l~~~~iG~GiL~LP~~~~~~G~~~g~i~l~~~~~~~~~s~~~l~~-~~~~~~~~~y~~l~~~~~G~~~~~~ 99 (435)
.+.+-.+.|=+.++-|+|.+.=|-.-.|-||.++.+.+++.+++.---..+++- .+.+++.++.+|++++.+|+..+.+
T Consensus 52 tnk~vlfGhHFaaIAGAGPivGPvlAAq~G~Lp~~LWIl~G~VfaGaVhD~~~L~~SvR~~G~Si~~ia~~~lG~~a~~~ 131 (575)
T COG1966 52 TNKWVLFGHHFASIAGAGPIVGPALAAQYGWLPAFLWILLGCVFAGAVHDYFSLMLSVRHGGKSIGEIAGKYLGRTAKVF 131 (575)
T ss_pred CCchhhhHHHHHHHhccCcchhHHHHHHhcCcHHHHHHHHhhhhhhhhhhhhheeeeeccCCccHHHHHHHHhhhhHHHH
Confidence 477888999999999999999999999999999999999888888777776665 4557889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccC
Q 013866 100 VQLCVMITNLGCLIIFLIIIGDVLC 124 (435)
Q Consensus 100 ~~~~~~~~~~g~~~~y~~~~~~~l~ 124 (435)
..+...+.......++.....+.+.
T Consensus 132 ~~~~~l~iliiv~Avfa~vv~~~l~ 156 (575)
T COG1966 132 FLLLALILLILVGAVFAAVIAKLLA 156 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999888888888888887764
No 83
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=96.94 E-value=0.37 Score=46.37 Aligned_cols=64 Identities=19% Similarity=0.140 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcccCC
Q 013866 61 IACLTDISVDFLMRYTNAGETSTYAGVMRESFGRAGSVAVQLCVMITNLGCLIIFLIIIGDVLCG 125 (435)
Q Consensus 61 ~~~~~~~s~~~l~~~~~~~~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~ 125 (435)
..++.+.-.++..|.... ..++..|..++-+||+..+...+...+........-....+..++.
T Consensus 22 ~~~~~~~~q~~~~R~~~~-Tg~~l~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~g~a~al~l 85 (358)
T PF01566_consen 22 SNLLKYVFQEMAARLGIV-TGKGLAEGIRERFGRGWAWFLWILIFLANIATQAAEIIGIAIALNL 85 (358)
T ss_pred HHHHHHHHHHHHHHHhhh-cCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333333444443333 3557778888889999999988888888887777776666655543
No 84
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=96.93 E-value=0.44 Score=46.25 Aligned_cols=89 Identities=16% Similarity=0.168 Sum_probs=58.2
Q ss_pred CCCCCCCCchHHHHHHHHHHHHhhhhc-hHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHhh----hcCCCCHH---
Q 013866 14 SSKTEKRPSVSGAVFNVATSIIGAGIM-SIPATIKVLGVIPAFVLIVIIACLTDISVDFLMRYTN----AGETSTYA--- 85 (435)
Q Consensus 14 ~~~~~~~~s~~~~~~~l~~~~iG~GiL-~LP~~~~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~----~~~~~~y~--- 85 (435)
+++++++.|-+|+++....+.+|.|-. ...-|....| +..+..+-+.+++..-+-+.-..... +.++.+|.
T Consensus 12 ~~~~~g~iS~fqA~~~ala~~vG~GNI~GVa~AI~~GG-PGAiFWMWi~a~~Gmatk~~E~~La~~yR~~~~~G~~~GGP 90 (416)
T PF01235_consen 12 KKEEEGGISPFQALCTALAGTVGTGNIAGVATAIAIGG-PGAIFWMWISALLGMATKYAEVTLAQKYREKDEDGEYRGGP 90 (416)
T ss_pred CCCCCCCcChHHHHHHHHHhccCcchHHHHHHHHHhhc-hhHHHHHHHHHHHHHHHHHHHHHHHHHheEECCCCCEeecH
Confidence 345567899999999999999999965 5888888766 55666666777766665544433332 22232332
Q ss_pred -HHHHHHhC-hhHHHHHHHH
Q 013866 86 -GVMRESFG-RAGSVAVQLC 103 (435)
Q Consensus 86 -~l~~~~~G-~~~~~~~~~~ 103 (435)
...++.+| ||.+.++.++
T Consensus 91 ~yyi~~gl~~k~la~~fai~ 110 (416)
T PF01235_consen 91 MYYIEKGLGSKWLAILFAIF 110 (416)
T ss_pred HHHHHHHhccchHHHHHHHH
Confidence 24566666 5555555555
No 85
>PRK15015 carbon starvation protein A; Provisional
Probab=96.88 E-value=0.026 Score=56.74 Aligned_cols=103 Identities=16% Similarity=0.267 Sum_probs=88.7
Q ss_pred chHHHHHHHHHHHHhhhhchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHH-HhhhcCCCCHHHHHHHHhChhHHHHH
Q 013866 22 SVSGAVFNVATSIIGAGIMSIPATIKVLGVIPAFVLIVIIACLTDISVDFLMR-YTNAGETSTYAGVMRESFGRAGSVAV 100 (435)
Q Consensus 22 s~~~~~~~l~~~~iG~GiL~LP~~~~~~G~~~g~i~l~~~~~~~~~s~~~l~~-~~~~~~~~~y~~l~~~~~G~~~~~~~ 100 (435)
+.+-.+-|=+.++-|+|.+-=|..-.+-||.++.+..++.+++.--...+..- ++.+++.++.+|++++..||+++.+.
T Consensus 84 ~k~VLfGHHFasIAGAGPivGPvlAa~~GwlP~~LWIl~G~vf~GaVhD~~~L~~S~R~~GrSig~ia~~~iG~~~~~lf 163 (701)
T PRK15015 84 DKKVLFGHHFAAIAGAGPLVGPVLAAQMGYLPGMIWLLAGVVLAGAVQDFMVLFVSTRRDGRSLGELVKEEMGPTAGVIA 163 (701)
T ss_pred CccchhHHHHHHHhccCccHHHHHHHHHcchHHHHHHHHcceeechhhhhhheeeeecCCCccHHHHHHHHhhHHHHHHH
Confidence 44567788999999999999999988999999999988888877666666554 45678899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccC
Q 013866 101 QLCVMITNLGCLIIFLIIIGDVLC 124 (435)
Q Consensus 101 ~~~~~~~~~g~~~~y~~~~~~~l~ 124 (435)
.+..++.+.....++...+.+.+.
T Consensus 164 li~i~~iliiviAvfalvvv~al~ 187 (701)
T PRK15015 164 LVACFMIMVIILAVLAMIVVKALT 187 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999888888888887763
No 86
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=96.60 E-value=0.81 Score=44.70 Aligned_cols=322 Identities=15% Similarity=0.191 Sum_probs=157.9
Q ss_pred hHHHHHHHHHHHHhhhhchHHHHHH-hhC--hHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHhChhHHHH
Q 013866 23 VSGAVFNVATSIIGAGIMSIPATIK-VLG--VIPAFVLIVIIACLTDISVDFLMRYTNAGETSTYAGVMRESFGRAGSVA 99 (435)
Q Consensus 23 ~~~~~~~l~~~~iG~GiL~LP~~~~-~~G--~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~y~~l~~~~~G~~~~~~ 99 (435)
....-+.++.-..|+|=|-.|-... ++| |+++.+.+++.++.--.-..+ +..+.+ .++++++++.- |+.+.+
T Consensus 5 ~l~ig~~LFamFFGAGNLIFPp~lG~~aG~~~~~a~~GF~lTgV~lP~Lgvi---a~~~~~-~~~~~l~~~v~-~~f~~i 79 (427)
T PF05525_consen 5 ILIIGFALFAMFFGAGNLIFPPFLGQQAGSNWWPAMIGFLLTGVGLPLLGVI---AVAKSG-GGIEDLASRVG-PKFALI 79 (427)
T ss_pred hhhHHHHHHHHHhCCccccchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH---HHhhcC-CCHHHHhcccC-cHHHHH
Confidence 3445667889999999998887665 444 777887777777655333222 112222 28888877775 444333
Q ss_pred HHHHHHHHHHHH--------HHHHHHhhhcccCCCCCCCccccchhhhhhcCccccchHHHHHHHHHHHHhccccccccc
Q 013866 100 VQLCVMITNLGC--------LIIFLIIIGDVLCGKQPEGSVHLGVLQEWFGFHWWNTRVFALLFVMVFVMLPLALFRRVG 171 (435)
Q Consensus 100 ~~~~~~~~~~g~--------~~~y~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~ 171 (435)
......+. .|- .+.|-+.+...++ . ..++..-.+.+++.. +.+-++ ++
T Consensus 80 f~~~i~l~-IGP~~aiPRtaa~sfe~~i~p~~~--------------~---~~~~~~~ifs~iFF~--i~~~l~----~~ 135 (427)
T PF05525_consen 80 FTILIYLS-IGPLFAIPRTAAVSFEMGIAPFFP--------------E---NSNISLLIFSIIFFA--ITYLLS----LN 135 (427)
T ss_pred HHHHHHHH-HHhcccCcchhhhhHHHhhhccCC--------------c---ccccchhhhhHHHHH--HHHHHH----hc
Confidence 33322221 110 1112111111111 0 111111111111111 111112 22
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCc------ccchhhhhhhhhhhhhhhhcccchhhhh-h
Q 013866 172 SLRFSSAISVLLAVIFVAICSVMAIYAVWEGKSKTPKLLPQLDN------HVSVFDLFTAVPVIVTAFTFHFNVHPIG-F 244 (435)
Q Consensus 172 ~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~faf~~~~~~~~i~-~ 244 (435)
.-+.+..++.+.+-..++...+..+....++.-+..+..++..+ ..+-.+.+.+++-..|+-. .+-.+. +
T Consensus 136 p~kivd~iGk~LTP~LL~~l~ilii~~i~~p~g~~~~~~~~y~~~~f~~Gf~eGY~TMD~laal~Fg~i---Ii~~i~~~ 212 (427)
T PF05525_consen 136 PSKIVDRIGKFLTPILLILLAILIIKGIFSPIGPPQAPSGAYASNPFFKGFLEGYQTMDALAALAFGII---IINAIRQK 212 (427)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhhhhHHHHHHHHHHhhhhHHHHHHHHHH---HHHHHHHh
Confidence 22335556655555555444444455554432221111110110 0112345555555555542 222332 2
Q ss_pred cCCCCchhH----HHHHHHHHHHHHHHHHHHhHHhHhcCC---Ccc-hhhhcCCCcCCcchhhhHHHHHHHHHHHHHHHH
Q 013866 245 EFDKPSDMI----TAVRISLVICAAIYFSVGLFGYLLFGE---SIM-SDILINFDQSSGSAISSLLNDLVRLSYALHLML 316 (435)
Q Consensus 245 ~m~~p~~~~----~~~~~s~~~~~~~y~~~~~~gy~~fg~---~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (435)
..+|+++.. ++-.++.....++|...+..|...-+. +.+ ++++....+. .+++....+..+.+.+.+++
T Consensus 213 g~~~~k~~~~~~~~ag~ia~~lL~~IY~gL~~lGa~~~~~~~~~~~g~~lL~~i~~~---~~G~~G~~ll~iiv~lACLT 289 (427)
T PF05525_consen 213 GYKDKKEIKKYTIKAGLIAGILLALIYGGLAYLGATSSGSFPDDINGAELLSQIANH---LFGSAGQILLGIIVFLACLT 289 (427)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcccccCCCCHHHHHHHHHHH---HcChhHHHHHHHHHHHHHHH
Confidence 234455333 445566666677788887777665443 222 3344333332 12345566677778888888
Q ss_pred hhhhhhhHHHHHHHHhhccCCcccccccchhhhHHHHHHHHHHHHHhhcCCHHHHHHhhhhhhhhhHHHhhhhHHHHH
Q 013866 317 VFPMLNFSLRANIDELLFSQKPLLAKDTKRFLSITLVLLVFSYTAAITIPDIWYFFQFLGSTSAVCLAFIFPGVIVLR 394 (435)
Q Consensus 317 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~p~~~~~~~~~G~~~~~~~~~i~P~~~~~~ 394 (435)
+--.....+.+-+++... +- +.++| ......++++++.. .++.++++ ..+.+.+++|..+-+.
T Consensus 290 TaIGL~~a~a~yf~~~~~--ki----sY~~~---v~i~~i~S~~ian~--Gl~~Ii~~----s~PiL~~iYP~~IvLI 352 (427)
T PF05525_consen 290 TAIGLISACAEYFSELFP--KI----SYKVW---VIIFTIFSFIIANL--GLDQIIKI----SVPILMFIYPVAIVLI 352 (427)
T ss_pred HHHHHHHHHHHHHHHHhc--cc----ChHHH---HHHHHHHHHHHHHh--CHHHHHHH----HHHHHHHHhHHHHHHH
Confidence 888888888887777652 11 11222 12233444444422 45577765 3567889999988775
No 87
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=96.53 E-value=0.39 Score=49.02 Aligned_cols=160 Identities=15% Similarity=0.195 Sum_probs=91.3
Q ss_pred CchHHHHHHHHHHHHhhhhc-hHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHhhh---cCCCCHHHHHHHHhChhH
Q 013866 21 PSVSGAVFNVATSIIGAGIM-SIPATIKVLGVIPAFVLIVIIACLTDISVDFLMRYTNA---GETSTYAGVMRESFGRAG 96 (435)
Q Consensus 21 ~s~~~~~~~l~~~~iG~GiL-~LP~~~~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~---~~~~~y~~l~~~~~G~~~ 96 (435)
.+..+...-.+-.+.|.-.+ =|-+.+..+|...+..+.++|++.+..|..-+.....+ +...+|--+ .+.+|+-.
T Consensus 115 Gt~mGVyLPclQnIlGVilFiRLtWvVG~AGv~q~fllv~iCC~cTmLTaISmSAIATNGVVpaGGsYfmI-SRsLGPEF 193 (1075)
T KOG2082|consen 115 GTLMGVYLPCLQNILGVILFIRLTWVVGMAGVGQGFLLVFICCLCTMLTAISMSAIATNGVVPAGGSYFMI-SRSLGPEF 193 (1075)
T ss_pred ceeeeeeHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCeeEEE-ecccCccc
Confidence 45556666667777776553 47888999999999999999999999988877665432 446677554 45566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccC-CCCCCC--ccccchhhhhhcCccccchHHHHHHHHHHHHhccccccccchh
Q 013866 97 SVAVQLCVMITNLGCLIIFLIIIGDVLC-GKQPEG--SVHLGVLQEWFGFHWWNTRVFALLFVMVFVMLPLALFRRVGSL 173 (435)
Q Consensus 97 ~~~~~~~~~~~~~g~~~~y~~~~~~~l~-~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~l 173 (435)
+-.+.++..+..-.+...|+.-.-|.+- .++|.. .......++ .+.-.=+.|.|..+++.+..++.+.-.|-++++
T Consensus 194 GgAVGlcFYLgtT~AaaMYIlGaVEi~L~Yi~P~aaIf~~~~a~~~-~~am~nnlRvYGT~~Li~m~lIVf~GVK~Vnk~ 272 (1075)
T KOG2082|consen 194 GGAVGLCFYLGTTVAAAMYILGAVEIFLTYIFPAAAIFGAEDAHDE-AAAMLNNLRVYGTVFLILMALIVFVGVKFVNKF 272 (1075)
T ss_pred cceeeehhhhhhHHHHHHHHHhHHHHHHHHHccHhhhcCccccccc-hhhhhcceehHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6666666666555555556544444332 233311 000011111 111111235555555555455555555555555
Q ss_pred hHHHHHHHH
Q 013866 174 RFSSAISVL 182 (435)
Q Consensus 174 ~~~s~~~~~ 182 (435)
+..+...++
T Consensus 273 A~vfL~CVI 281 (1075)
T KOG2082|consen 273 APVFLACVI 281 (1075)
T ss_pred hHHHHHHHH
Confidence 544444443
No 88
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=96.36 E-value=0.31 Score=49.32 Aligned_cols=53 Identities=13% Similarity=0.078 Sum_probs=40.0
Q ss_pred hhhhhhhhhhhhhcccchhhhhhcCCCCc-hhHHHHHHHHHHHHHHHHHHHhHH
Q 013866 222 LFTAVPVIVTAFTFHFNVHPIGFEFDKPS-DMITAVRISLVICAAIYFSVGLFG 274 (435)
Q Consensus 222 ~~~~~~~~~faf~~~~~~~~i~~~m~~p~-~~~~~~~~s~~~~~~~y~~~~~~g 274 (435)
+-..++++.=+-.|...-.....|+|+|+ .++|-...++...+++|.++.+.-
T Consensus 296 F~~~FgV~F~g~tGimAGAnMSgELk~PSkSIP~GTl~ava~Tf~~Yvl~~flm 349 (945)
T KOG1288|consen 296 FASTFGVFFPGTTGIMAGANMSGELKAPSKSIPKGTLSAVAFTFFVYVLVIFLM 349 (945)
T ss_pred hhhhheeeeccchhhhcCCCcCccccCccccCCccchHHHHHHHHHHHHHHHHh
Confidence 44455555555555555567889999999 799999999999999999985543
No 89
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism]
Probab=95.83 E-value=0.018 Score=56.96 Aligned_cols=227 Identities=13% Similarity=0.197 Sum_probs=128.1
Q ss_pred CCchHHHHHHHHH-HHHhhh-hchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHhhh---cCCCCHHHHHHHHhCh
Q 013866 20 RPSVSGAVFNVAT-SIIGAG-IMSIPATIKVLGVIPAFVLIVIIACLTDISVDFLMRYTNA---GETSTYAGVMRESFGR 94 (435)
Q Consensus 20 ~~s~~~~~~~l~~-~~iG~G-iL~LP~~~~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~---~~~~~y~~l~~~~~G~ 94 (435)
+-+|++.++.-.- .+.|.= .|=+++-..|+|...+++++..+..++..|..--.....+ .....|. +..+.+|+
T Consensus 29 ~fg~~~gv~~~cmlni~gv~lflrl~wivgqagi~~~~~ii~~~~~vt~it~lSa~~I~t~~~vk~Gg~yf-lis~slg~ 107 (643)
T KOG2083|consen 29 LFGWWDGVFVRCMLNIFGVILFLRLGWIVGQAGIGNSVLIIGLTTVVTLITVLSAIAIVTRGQVKSGGVYF-LISRSLGP 107 (643)
T ss_pred EEeeeehhhhhhhHHHHHHHHhhhhhheeecchhhhhHHHHHHHHHHHHHHHHhHheeeecceeccCcEEE-EEEecccc
Confidence 4577776653222 223322 2458999999999999999988888887776554443222 2233443 33556677
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCccccchhhhhhcCccccchHHHHHHHHHHHHhccccccccchhh
Q 013866 95 AGSVAVQLCVMITNLGCLIIFLIIIGDVLCGKQPEGSVHLGVLQEWFGFHWWNTRVFALLFVMVFVMLPLALFRRVGSLR 174 (435)
Q Consensus 95 ~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~l~ 174 (435)
..+--..+++.+.+--.|..|..-.+|.+.++++... ....+. ... +.+++++..+. ...+
T Consensus 108 efggsigiIy~f~~aVa~am~~vgfaEsv~~l~~~~s-----------~~~i~g--i~~--vt~~ill~i~~----ag~~ 168 (643)
T KOG2083|consen 108 EFGGSIGIIYAFANAVATAMYVVGFAESVAHLFETES-----------KEMIDG--IGS--VTVLILLAINV----AGVE 168 (643)
T ss_pred cccchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhcc-----------HHHhcc--hhH--HHHHHHHHhhh----ccch
Confidence 7777777778888888888999999998876665320 000111 111 12222222222 1223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HhcCC------CC------CCCCCCCCCcccchhhhhhhhhhhhhhhhcccchhh
Q 013866 175 FSSAISVLLAVIFVAICSVMAIYA-VWEGK------SK------TPKLLPQLDNHVSVFDLFTAVPVIVTAFTFHFNVHP 241 (435)
Q Consensus 175 ~~s~~~~~~~~~~~~~~~~~~~~~-~~~~~------~~------~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~ 241 (435)
+.+.+.++..++.++ .+...+.. ++..+ .. .....|+.+ .-..++..++++.=+..|.-.-..
T Consensus 169 w~~k~q~~ll~il~i-ai~~f~~gs~~~~~~~~~g~~~~~a~~~~~n~~~~~~---~~~tfF~vf~vfFpaatgilaG~n 244 (643)
T KOG2083|consen 169 WEAKLQIVLLLILLI-AIADFLVGSFFSPNEFSSGFFGYRADIFVENLNPDID---PGYTFFSVFAVFFPAATGILAGAN 244 (643)
T ss_pred hHHHHHHHHHHHHHH-HHHHhhhhhccChhhhcccccccchhhcccCCCCCcC---CCCceEeeeeeecchhhhhhcccc
Confidence 333333321111111 11111111 11111 00 011122221 113566666777777777777788
Q ss_pred hhhcCCCCc-hhHHHHHHHHHHHHHHHHHH
Q 013866 242 IGFEFDKPS-DMITAVRISLVICAAIYFSV 270 (435)
Q Consensus 242 i~~~m~~p~-~~~~~~~~s~~~~~~~y~~~ 270 (435)
+.+++|+|+ ..++....+......+|..+
T Consensus 245 isGdL~~Pq~~IP~GaL~Ai~vst~~yl~~ 274 (643)
T KOG2083|consen 245 ISGDLKDPQKAIPLGALLAIGVSTLLYLIF 274 (643)
T ss_pred ccCCCCCchhhcccchhhhhhhhhhhhhhh
Confidence 999999999 89999999999999999665
No 90
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=95.22 E-value=2.7 Score=41.16 Aligned_cols=261 Identities=13% Similarity=0.071 Sum_probs=125.4
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHHhhhhchHHHHHHhhC--hHHHHHHHHHHHHHHHHHHHHHHHHhhhc--CCCCHHH
Q 013866 11 LLPSSKTEKRPSVSGAVFNVATSIIGAGIMSIPATIKVLG--VIPAFVLIVIIACLTDISVDFLMRYTNAG--ETSTYAG 86 (435)
Q Consensus 11 ~~~~~~~~~~~s~~~~~~~l~~~~iG~GiL~LP~~~~~~G--~~~g~i~l~~~~~~~~~s~~~l~~~~~~~--~~~~y~~ 86 (435)
|.+.++++|.=|+++-+..=....++.+.--....--+.| |..++++..+.-.+... .++-.++.. =..+++=
T Consensus 46 L~Pv~~~~Rtws~~~~~~fW~~~~fnv~Tw~ia~s~l~lGLswwq~~~tv~vG~~~~~~---f~~lns~~G~~yhIsFpv 122 (572)
T KOG2466|consen 46 LKPVPPSRRTWSWWNYIAFWLADSFNVNTWMIAGSALELGLSWWQTWITVWVGYLFTAI---FLVLNSRPGSDYHISFPV 122 (572)
T ss_pred CCcCCcccccccHHHHHHHHHhccccccceeehhhHHhccCCHHHHHHHHHHHHHHHHH---HHHHccCCCcccccceee
Confidence 3444556788899999988888888888877777777777 67777766655544422 222222111 0224444
Q ss_pred HHHHHhChhHH---HHHHHHHHHHHHHHHHHHHHhhhcccC----CCCCCCccccchhhhhhcCccccchHHHHHHHHHH
Q 013866 87 VMRESFGRAGS---VAVQLCVMITNLGCLIIFLIIIGDVLC----GKQPEGSVHLGVLQEWFGFHWWNTRVFALLFVMVF 159 (435)
Q Consensus 87 l~~~~~G~~~~---~~~~~~~~~~~~g~~~~y~~~~~~~l~----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (435)
..+..||-++. .+..+.+.+.-+|+. .-+.|+.+. ++++...+. +..++.... ...-++++++.-
T Consensus 123 ~sR~sFGiygS~~pIi~R~vma~vwYg~~---awiGgecV~lmL~si~~~~~hi----pntl~~~~~-tt~e~i~FfIFw 194 (572)
T KOG2466|consen 123 LSRSSFGIYGSLWPIINRVVMACVWYGVN---AWIGGECVQLMLKSIFKSFSHI----PNTLGKPGT-TTYEFIGFFIFW 194 (572)
T ss_pred eeeeehhhhHhHHHHHHHHHHHHhhhhhh---hhhhhhhHHHHHHHHhhhhhcC----ccccCCCCC-chHHHHHHHHHH
Confidence 55666665443 333334433333322 112223222 222221111 112221111 122233333322
Q ss_pred HHhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC-CCCCCCCcccchhhhhhhhhhhhhhhh-ccc
Q 013866 160 VMLPLALFRRVGSLRFSSAISVLLAVIFVAICSVMAIYAVWEGKSKTP-KLLPQLDNHVSVFDLFTAVPVIVTAFT-FHF 237 (435)
Q Consensus 160 ~~~pl~~~~~~~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~faf~-~~~ 237 (435)
++-..+......+++++-..+-+.+.......++....+. ++..+. +...+.+.....+.++.++...+-.|. ...
T Consensus 195 v~s~~~~~~~p~~ir~lf~~ka~~t~fA~~g~LIw~l~kA--hG~G~l~~~~st~~gs~~aWa~~~~i~~~~~~fstl~~ 272 (572)
T KOG2466|consen 195 VASLPFYWFPPYKIRHLFTWKAVLTPFAAFGFLIWLLKKA--HGLGHLFDSKSTVSGSAHAWAFVRSIMSCIANFSTLIV 272 (572)
T ss_pred HHhhheeeccHHHhhhHHHHHHhhhHHHHHHHHHHHHHhc--CCccccccCCCcccccchhHHHHHHHHHHHhccchhhc
Confidence 2322333445666777666665433333222222222221 111111 111112222233444444444444443 456
Q ss_pred chhhhhhcCCCCchhHHHHHHHHHHHHHHHHHH----HhHHhHhcCCCcch
Q 013866 238 NVHPIGFEFDKPSDMITAVRISLVICAAIYFSV----GLFGYLLFGESIMS 284 (435)
Q Consensus 238 ~~~~i~~~m~~p~~~~~~~~~s~~~~~~~y~~~----~~~gy~~fg~~~~~ 284 (435)
|.|...+--|+|.+....-..+..+.+.+..++ +.+++-.||.+--+
T Consensus 273 N~pDFsRF~ksp~a~~~~Ql~alp~~~~l~~liGVlv~sa~~~iYG~~~W~ 323 (572)
T KOG2466|consen 273 NAPDFSRFAKSPNAIWWGQLIALPLPFGLTPLIGVLVTSASKIIYGTNYWS 323 (572)
T ss_pred cCchhHhhcCCCCccchhhhhhhhhhhhhhhheeeEehhhhhhhhcccccC
Confidence 888888889999755555555555555555554 44677788876443
No 91
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=92.58 E-value=11 Score=36.97 Aligned_cols=327 Identities=13% Similarity=0.102 Sum_probs=157.5
Q ss_pred chHHHHHHHHHHHHhhhhchHHHHHH-hhC--hHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHhChhHHH
Q 013866 22 SVSGAVFNVATSIIGAGIMSIPATIK-VLG--VIPAFVLIVIIACLTDISVDFLMRYTNAGETSTYAGVMRESFGRAGSV 98 (435)
Q Consensus 22 s~~~~~~~l~~~~iG~GiL~LP~~~~-~~G--~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~y~~l~~~~~G~~~~~ 98 (435)
.....-+.++.-..|+|=|-.|-... ++| |..+.+.+++.++.--.-..+ +..+.+ .+++|++++.- |+.+.
T Consensus 9 ~~l~iG~~LFamFFGAGNLIFPp~LG~~aG~~~~~a~~GF~iT~VglPlLgii---ava~~~-g~~~~l~~rv~-~~f~~ 83 (439)
T PRK15433 9 DIIALGFMTFALFVGAGNIIFPPMVGLQAGEHVWTAAFGFLITAVGLPVLTVV---ALAKVG-GGVDSLSTPIG-KVAGV 83 (439)
T ss_pred HHHHHHHHHHHHHhcCcchhccHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH---HHhhcC-CCHHHHhhhcc-hHHHH
Confidence 45566778999999999998887765 455 777777666666543222111 111222 58888877765 44444
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh--cccCCCCCCCccccchhhhhhcCccccchHHHHHHHHHHHHhccccccccchhhHH
Q 013866 99 AVQLCVMITNLGCLIIFLIIIG--DVLCGKQPEGSVHLGVLQEWFGFHWWNTRVFALLFVMVFVMLPLALFRRVGSLRFS 176 (435)
Q Consensus 99 ~~~~~~~~~~~g~~~~y~~~~~--~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~l~~~ 176 (435)
+......+ . +| -.+++...- ..+.++ .+..+. + +... ++.. ++.+...+.-.++.-+.+
T Consensus 84 ~f~~~i~l----------~-IGP~~aiPRtaav-sfEm~i-~p~~~~-~-~~~~--~ifs--~iFF~i~~~l~l~p~klv 144 (439)
T PRK15433 84 LLATVCYL----------A-VGPLFATPRTATV-SFEVGI-APLTGD-S-ALPL--FIYS--LVYFAIVILVSLYPGKLL 144 (439)
T ss_pred HHHHHHHH----------H-HhhccccCCcccc-chhhee-eccCCc-c-cHHH--HHHH--HHHHHHHHHHHcChhhHH
Confidence 33332222 1 12 111111110 000011 111111 0 0111 1111 112222222222223346
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCC--CC-CCCCCC---Ccccchhhhhhhhhhhhhhhhcccchhhhhh-cCCCC
Q 013866 177 SAISVLLAVIFVAICSVMAIYAVWEGKSK--TP-KLLPQL---DNHVSVFDLFTAVPVIVTAFTFHFNVHPIGF-EFDKP 249 (435)
Q Consensus 177 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~---~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~-~m~~p 249 (435)
..++.+.+-..++......+....++.-+ .+ +.+.+. +...+-.+.+.+++...|+.. .+-.+.+ ..+|+
T Consensus 145 d~iGK~LTP~LL~~l~~lii~~i~~p~g~~~~~~~~y~~~~f~~Gf~eGY~TMDalaal~Fg~i---ii~~i~~~G~~~~ 221 (439)
T PRK15433 145 DTVGNFLAPLKIIALVILSVAAIVWPAGSISTATEAYQNAAFSNGFVNGYLTMDTLGAMVFGIV---IVNAARSRGVTEA 221 (439)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcchhhhhhhHHHHHHhhHHHHHHHHHHHHHHH---HHHHHHHcCCCCH
Confidence 66666655555554444444444443211 11 111110 011122356667777666653 3333333 36666
Q ss_pred chhH----HHHHHHHHHHHHHHHHHHhHHhHhcC---CC-cchhhhcCCCcCCcchhhhHHHHHHHHHHHHHHHHhhhhh
Q 013866 250 SDMI----TAVRISLVICAAIYFSVGLFGYLLFG---ES-IMSDILINFDQSSGSAISSLLNDLVRLSYALHLMLVFPML 321 (435)
Q Consensus 250 ~~~~----~~~~~s~~~~~~~y~~~~~~gy~~fg---~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 321 (435)
++.. ++-.++......+|...+..|...-+ +. ...+++...... .++++...+..+.+.+.++++--..
T Consensus 222 ~~~~k~t~~ag~ia~~~L~~vY~gL~~lGa~s~~~~~~~~~g~~il~~~~~~---~~G~~G~~ll~iiv~lACLTTaIGL 298 (439)
T PRK15433 222 RLLTRYTVWAGLMAGVGLTLLYLALFRLGSDSASLVDQSANGAAILHAYVQH---TFGGGGSFLLAALIFIACLVTAVGL 298 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCCcHhHHHHHHHHH---HhCHHHHHHHHHHHHHHHHHHHHHH
Confidence 6433 44556666667778888777765422 11 112232222211 2334556666677777888887777
Q ss_pred hhHHHHHHHHhhccCCcccccccchhhhHHHHHHHHHHHHHhhcCCHHHHHHhhhhhhhhhHHHhhhhHHHHH
Q 013866 322 NFSLRANIDELLFSQKPLLAKDTKRFLSITLVLLVFSYTAAITIPDIWYFFQFLGSTSAVCLAFIFPGVIVLR 394 (435)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~p~~~~~~~~~G~~~~~~~~~i~P~~~~~~ 394 (435)
...+.+.+++.. + . +.+.+ ......+++.++.. .+++++++ ..+.+.+++|..+-+.
T Consensus 299 i~a~a~~f~~~~-~--i----sY~~~---v~i~~l~S~~lSn~--G~~~II~~----s~PiL~~iYP~~IvLi 355 (439)
T PRK15433 299 TCACAEFFAQYV-P--L----SYRTL---VFILGGFSMVVSNL--GLSQLIQI----SVPVLTAIYPPCIALV 355 (439)
T ss_pred HHHHHHHHHhhc-C--C----cHHHH---HHHHHHHHHHHHHh--HHHHHHHH----HHHHHHHHhHHHHHHH
Confidence 777777666553 1 1 11111 22333344444422 35566654 4777899999888775
No 92
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=92.43 E-value=3 Score=40.27 Aligned_cols=49 Identities=14% Similarity=0.203 Sum_probs=42.9
Q ss_pred CCCCHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCC
Q 013866 80 ETSTYAGVMRESFGRAGSVAVQLCVMITNLGCLIIFLIIIGDVLCGKQP 128 (435)
Q Consensus 80 ~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~l~~ 128 (435)
+..-..+++++.+|+.|+.+..+...+.|+.+++......+|..+++.+
T Consensus 253 ~~~~l~~~a~~~~G~~G~~ll~i~v~lACLtT~iGli~~~a~~f~~~~~ 301 (378)
T TIGR00796 253 GAQILSAYSQHLFGSLGSFLLGLIITLACLTTAVGLTTACSEYFHKLVP 301 (378)
T ss_pred cHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4455678899999999999999999999999999999999999866543
No 93
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=92.06 E-value=15 Score=37.31 Aligned_cols=71 Identities=14% Similarity=0.137 Sum_probs=42.6
Q ss_pred CchHHHHHHHHHHHHhhh-hchHHHHHHhhChHHH----HHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHH
Q 013866 21 PSVSGAVFNVATSIIGAG-IMSIPATIKVLGVIPA----FVLIVIIACLTDISVDFLMRYTNAGETSTYAGVMRES 91 (435)
Q Consensus 21 ~s~~~~~~~l~~~~iG~G-iL~LP~~~~~~G~~~g----~i~l~~~~~~~~~s~~~l~~~~~~~~~~~y~~l~~~~ 91 (435)
.|..+-+...++..+|.| +.-.|+-..+-|-... .+++++.|.-..+.-..+.|..++...+.|.+++...
T Consensus 5 ~~~~~~~l~~~g~~vglgn~wrfp~~~~~~gG~~Fli~y~~~~~~~giP~~~lE~~lGq~~~~~~~~~~~~~~p~~ 80 (523)
T PF00209_consen 5 SSKIGFILACIGYAVGLGNIWRFPYLCYENGGGAFLIPYLLFLLLVGIPLLYLELALGQYSRSGPIGAWKRLCPIF 80 (523)
T ss_dssp S-HHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTSHHHS-HHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 466788889999999999 5679998665552222 3334444444444445556655555555565555443
No 94
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=91.94 E-value=13 Score=36.28 Aligned_cols=107 Identities=15% Similarity=0.106 Sum_probs=63.2
Q ss_pred CCCCCCchHHHHHHHHHHHHhhhhc-hHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHhh----hcCCCCHHH----
Q 013866 16 KTEKRPSVSGAVFNVATSIIGAGIM-SIPATIKVLGVIPAFVLIVIIACLTDISVDFLMRYTN----AGETSTYAG---- 86 (435)
Q Consensus 16 ~~~~~~s~~~~~~~l~~~~iG~GiL-~LP~~~~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~----~~~~~~y~~---- 86 (435)
+++++.|-+|+.+.-..+.+|+|=. ...-|.+..| +..+..+=+.+++..-+.+.-..... +.+...|..
T Consensus 58 ~~~~~vS~FqAl~~sla~~VGtGNIaGVAtAI~~GG-PGAvFWMWi~Al~Gmat~f~E~~La~~Yr~kd~~G~~~GGP~y 136 (452)
T COG1115 58 AGKGGVSSFQALMTSLAARVGTGNIAGVATAIALGG-PGAVFWMWIVALFGMATKFAESTLAQKYRVKDKDGEYRGGPAY 136 (452)
T ss_pred CCCCCcChHHHHHHHHHhccCcchHHHHHHHHHcCC-CccHHHHHHHHHHHHHHHHHHHHHHhheeEeCCCCCCcCChHH
Confidence 4578899999999999999999975 5888888766 34555555555555555443333222 222333432
Q ss_pred HHHHHhC-hhHHHHHHHHHHHHHH-HHHHHHHHhhhccc
Q 013866 87 VMRESFG-RAGSVAVQLCVMITNL-GCLIIFLIIIGDVL 123 (435)
Q Consensus 87 l~~~~~G-~~~~~~~~~~~~~~~~-g~~~~y~~~~~~~l 123 (435)
..++-+| ||.+.++.+...+... ..+..-...+++.+
T Consensus 137 Yi~kGl~~r~l~v~FA~~li~afg~i~n~vQ~NsIa~a~ 175 (452)
T COG1115 137 YIEKGLGMRWLAVLFAFALIAAFGFIGNGVQSNSIASAL 175 (452)
T ss_pred HHHhhcCCcHHHHHHHHHHHHHHHhhcchhhHHHHHHHH
Confidence 3455555 6777776633333222 14444444445444
No 95
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters. This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene
Probab=91.14 E-value=16 Score=35.60 Aligned_cols=36 Identities=11% Similarity=0.121 Sum_probs=22.5
Q ss_pred CCCCHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHH
Q 013866 80 ETSTYAGVMRESFGRAGSVAVQLCVMITNLGCLIIF 115 (435)
Q Consensus 80 ~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y 115 (435)
..++..|+.++-++|+.++..-+.......+....-
T Consensus 62 Tg~~l~~~~r~~~~~~~~~~~~~~~~l~ii~~~~~e 97 (390)
T TIGR01197 62 TGLDLAEVCREHYPKVPRITLWILAELAIIATDMAE 97 (390)
T ss_pred cCCCHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHH
Confidence 356788999999998776655444444334333333
No 96
>PHA02764 hypothetical protein; Provisional
Probab=87.89 E-value=23 Score=32.98 Aligned_cols=88 Identities=18% Similarity=0.094 Sum_probs=57.6
Q ss_pred CCCCchHHHHH-HHHHHHHhhhhchHHHHHHhh--ChHHHHHHHHHHHHHHHHHHHHHHHHhh-hcCCCCHHHHHHHHhC
Q 013866 18 EKRPSVSGAVF-NVATSIIGAGIMSIPATIKVL--GVIPAFVLIVIIACLTDISVDFLMRYTN-AGETSTYAGVMRESFG 93 (435)
Q Consensus 18 ~~~~s~~~~~~-~l~~~~iG~GiL~LP~~~~~~--G~~~g~i~l~~~~~~~~~s~~~l~~~~~-~~~~~~y~~l~~~~~G 93 (435)
-|+.|.+++++ |+.+...|.++ +.|+-+... |.. .+..+++.++++........+... .++...-....++++|
T Consensus 11 VREvs~lDAF~~Nl~~m~~Gi~I-s~~~l~a~l~pG~n-lLLAWLLGGLlALPgAL~YAELGSAmPrAGGdYVYISRAFG 88 (399)
T PHA02764 11 IKSFNILDIFSINLLYMGILSGI-SYPLFVSSLLKNVN-LLFAILIGAVFEIPLLLMYYKLTTKFPLNGGDYAYIRTAFS 88 (399)
T ss_pred eeeccHHHHHHHHHHhhccchhH-HHHHHHhhcCCchh-HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCceEEEhHHhhC
Confidence 56778888888 66666666654 556544333 432 566777777777777777777544 3333322244689999
Q ss_pred hhHHHHHHHHHHHH
Q 013866 94 RAGSVAVQLCVMIT 107 (435)
Q Consensus 94 ~~~~~~~~~~~~~~ 107 (435)
++.+.++.+..+..
T Consensus 89 P~~GFLvG~a~WLt 102 (399)
T PHA02764 89 SKFYTIFGISLWLT 102 (399)
T ss_pred ccHHHHHHHHHHHH
Confidence 99999888877764
No 97
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=85.62 E-value=6.7 Score=38.45 Aligned_cols=83 Identities=16% Similarity=0.251 Sum_probs=54.6
Q ss_pred HHhhChHHHHHHHHHHHHHHHHHHHHHHHHh-hhcCCCCHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 013866 46 IKVLGVIPAFVLIVIIACLTDISVDFLMRYT-NAGETSTYAGVMRESFGRAGSVAVQLCVMITNLGCLIIFLIIIGDVLC 124 (435)
Q Consensus 46 ~~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~-~~~~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~ 124 (435)
...+|...++.+.++-+.+.+.....-.... ..++..-..+++++.+|+.|..+..+...+.|+-+++.....++|+.+
T Consensus 224 ~~~ag~ia~~lL~~IY~gL~~lGa~~~~~~~~~~~g~~lL~~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a~a~yf~ 303 (427)
T PF05525_consen 224 TIKAGLIAGILLALIYGGLAYLGATSSGSFPDDINGAELLSQIANHLFGSAGQILLGIIVFLACLTTAIGLISACAEYFS 303 (427)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCcccccCCCCHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344554444444444444433322221111 122334456789999999999999999999999999999999999997
Q ss_pred CCCC
Q 013866 125 GKQP 128 (435)
Q Consensus 125 ~l~~ 128 (435)
++.+
T Consensus 304 ~~~~ 307 (427)
T PF05525_consen 304 ELFP 307 (427)
T ss_pred HHhc
Confidence 6543
No 98
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism]
Probab=84.95 E-value=4.3 Score=41.11 Aligned_cols=92 Identities=10% Similarity=0.024 Sum_probs=52.4
Q ss_pred CCCCCchHHHHHHHHHHHHhhhh-chHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHhChh
Q 013866 17 TEKRPSVSGAVFNVATSIIGAGI-MSIPATIKVLGVIPAFVLIVIIACLTDISVDFLMRYTNAGETSTYAGVMRESFGRA 95 (435)
Q Consensus 17 ~~~~~s~~~~~~~l~~~~iG~Gi-L~LP~~~~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~y~~l~~~~~G~~ 95 (435)
..|++-++...+.++.+.+|++- +++|....+.|.-.....+......-..+ +.....-.+.+..+-.|.-++-||++
T Consensus 43 ~gr~m~~~Pv~~SL~aS~~s~~~~~gl~~e~~~~G~~~~~~~~~~l~~~~~~~-~~f~Pvf~~~~v~~~~eYl~~Rf~~~ 121 (585)
T KOG2349|consen 43 GGRSMVWLPVAASLFASNISSVHFLGLPGEGYAYGIQYWFFEWNALLSVLLLG-WIFIPVFYRLGVTTMYEYLEKRFGGR 121 (585)
T ss_pred cCCcceEEEeehhhhhhhhcceeeecCchHHHHHHHHHHHHHHHHHHHHHhhh-eEEEEEEEecCeeehhHHHHHHhccc
Confidence 37788888888889998888875 68998888777543222221111111000 11011111334455556668888887
Q ss_pred HHHHHHHHHHHHHH
Q 013866 96 GSVAVQLCVMITNL 109 (435)
Q Consensus 96 ~~~~~~~~~~~~~~ 109 (435)
.+....+...++.+
T Consensus 122 ~r~l~~l~f~l~~~ 135 (585)
T KOG2349|consen 122 VRYLATLSFILMIF 135 (585)
T ss_pred chhhHHHHHHHHHH
Confidence 66666665555433
No 99
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=77.32 E-value=74 Score=30.97 Aligned_cols=329 Identities=15% Similarity=0.145 Sum_probs=149.4
Q ss_pred CchHHHHHHHHHHHHhhhhchHHHHHH-hhC--hHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHhChhHH
Q 013866 21 PSVSGAVFNVATSIIGAGIMSIPATIK-VLG--VIPAFVLIVIIACLTDISVDFLMRYTNAGETSTYAGVMRESFGRAGS 97 (435)
Q Consensus 21 ~s~~~~~~~l~~~~iG~GiL~LP~~~~-~~G--~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~y~~l~~~~~G~~~~ 97 (435)
.+.+..-+.++.-..|+|=+-.|-... ++| ++.+..-+++.++.- =++.-..-....++|++++++. |||.+
T Consensus 5 k~~~~~GfmLFalFFGAGNlIFPP~LG~~aG~~~~~A~lGFllTgVgl----PlLgiIa~a~~g~~~~~l~~~i-~~~fg 79 (431)
T COG1114 5 KDIIALGFMLFALFFGAGNLIFPPMLGLHAGEHVWPAILGFLLTGVGL----PLLGIIAVALYGGGVESLATRI-GPWFG 79 (431)
T ss_pred hhHHHHHHHHHHHHhcCCCccCChhhhhhcCccHHHHHHHHHHHHhhH----HHHHHHHhhccCCCHHHHhhhc-cchHH
Confidence 344556677889999999998886655 344 555555555544432 2222211111223888887776 46666
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcc--cCCCCCCCccccchhhhhhcCccccchHHHHHHHHHHHHhccccccccchhhH
Q 013866 98 VAVQLCVMITNLGCLIIFLIIIGDV--LCGKQPEGSVHLGVLQEWFGFHWWNTRVFALLFVMVFVMLPLALFRRVGSLRF 175 (435)
Q Consensus 98 ~~~~~~~~~~~~g~~~~y~~~~~~~--l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~l~~ 175 (435)
.+......+ . +|-. +++... ...+..+ .+..+............+... +..-++ .+.+ +.
T Consensus 80 ~~f~~~iyL----------s-IGPffAiPRt~~-vsfe~~i-~p~~~~~~~~~l~ifs~ifF~-ia~~~s--l~ps--kl 141 (431)
T COG1114 80 VLFAIAIYL----------S-IGPFFAIPRTGA-VSFEVGI-SPLLGDSSLPSLFIFSVIFFA-IAYLFS--LNPS--KL 141 (431)
T ss_pred HHHHHHHHH----------H-hcccccCCcccc-hhHHHhh-hcccCCCcchHHHHHHHHHHH-HHHHHH--cCHH--HH
Confidence 555443332 2 2211 111110 0000011 010111000111111111111 111111 1222 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCc------ccchhhhhhhhhhhhhhhhcccchhhhhhcCC--
Q 013866 176 SSAISVLLAVIFVAICSVMAIYAVWEGKSKTPKLLPQLDN------HVSVFDLFTAVPVIVTAFTFHFNVHPIGFEFD-- 247 (435)
Q Consensus 176 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~-- 247 (435)
+..++-+.+-..++......+.....+.-+..+..++..+ ..+..+.+.+++-++|+- .+.+-.++..
T Consensus 142 id~vGk~LTPilLv~l~il~i~~~~~p~g~~~~a~~~y~~~pf~~GfleGY~TMDaLAal~Fgi----vIv~alk~~g~~ 217 (431)
T COG1114 142 IDRVGKFLTPILLVLLLILVIAAIIPPAGPISAASGAYQSQPFSKGFLEGYLTMDALAALAFGI----VIVNALKSKGVT 217 (431)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhCCCCCcccccHHHHhChHHHHHhcchHHHHHHHHHHHHH----HHHHHHHHhccC
Confidence 5555555555554444444444444332222211111111 111223445554444433 3333333332
Q ss_pred CCc----hhHHHHHHHHHHHHHHHHHHHhHHhHhc---CCCcc-hhhhcCCCcCCcchhhhHHHHHHHHHHHHHHHHhhh
Q 013866 248 KPS----DMITAVRISLVICAAIYFSVGLFGYLLF---GESIM-SDILINFDQSSGSAISSLLNDLVRLSYALHLMLVFP 319 (435)
Q Consensus 248 ~p~----~~~~~~~~s~~~~~~~y~~~~~~gy~~f---g~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 319 (435)
+++ +..++-.++......+|...+..|..+- ++..+ ..++..+.+. .+++....+.-+.+.+.++++--
T Consensus 218 ~~~~~~~~~~~aglIa~i~La~iY~~L~ylGa~s~~~~~~~~nG~~IL~~~s~~---~fG~~G~~lL~~iv~lACLTTai 294 (431)
T COG1114 218 TKKQIIKYTIKAGLIAAILLALIYLSLFYLGATSASAAGLAANGGQILSAYSQH---LFGSYGSILLGLIVFLACLTTAV 294 (431)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhhcccccchHHHHHHHHHH---HhchhhHHHHHHHHHHHHHHHHH
Confidence 232 2335555666666777888877663332 11111 2333333322 22344455556667778888777
Q ss_pred hhhhHHHHHHHHhhccCCcccccccchhhhHHHHHHHHHHHHHhhcCCHHHHHHhhhhhhhhhHHHhhhhHHHHH
Q 013866 320 MLNFSLRANIDELLFSQKPLLAKDTKRFLSITLVLLVFSYTAAITIPDIWYFFQFLGSTSAVCLAFIFPGVIVLR 394 (435)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~p~~~~~~~~~G~~~~~~~~~i~P~~~~~~ 394 (435)
.....+.|-+.+..- + .+.+.| .++...++++++.. .++.++.+ ..+.+.+++|..+-+.
T Consensus 295 GLi~a~aefF~~~~p-~-----~SY~~~---v~if~i~sflvan~--GL~~Ii~i----svPvL~~iYPiaI~Lv 354 (431)
T COG1114 295 GLIVACAEFFSKLVP-K-----LSYKTW---VIIFTLISFLVANL--GLEQIIKI----SVPVLTAIYPIAIALV 354 (431)
T ss_pred HHHHHHHHHHHHhcc-c-----ccHHHH---HHHHHHHHHHHHHh--hHHHHHHH----HHHHHHHHhHHHHHHH
Confidence 777777776665542 1 111222 23334455555522 34566654 4677889999887775
No 100
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=77.19 E-value=23 Score=34.87 Aligned_cols=43 Identities=14% Similarity=0.213 Sum_probs=38.2
Q ss_pred HHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCC
Q 013866 85 AGVMRESFGRAGSVAVQLCVMITNLGCLIIFLIIIGDVLCGKQ 127 (435)
Q Consensus 85 ~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~l~ 127 (435)
...+++.+|++++.+..+.+.+.|+-+++.....++|..++..
T Consensus 268 ~~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~~~ 310 (439)
T PRK15433 268 HAYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFAQYV 310 (439)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4468889999999999999999999999999999999886543
No 101
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=74.99 E-value=68 Score=31.22 Aligned_cols=98 Identities=16% Similarity=0.226 Sum_probs=62.8
Q ss_pred HHHHHhhhhchHH---HHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHh-hhcCCCCHHHHHHHHhChhHHHHHHHHHHH
Q 013866 31 ATSIIGAGIMSIP---ATIKVLGVIPAFVLIVIIACLTDISVDFLMRYT-NAGETSTYAGVMRESFGRAGSVAVQLCVMI 106 (435)
Q Consensus 31 ~~~~iG~GiL~LP---~~~~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~-~~~~~~~y~~l~~~~~G~~~~~~~~~~~~~ 106 (435)
+|+.=.-|+-.=. .....+|+..++.+.++-..+.......-.... .+++..=..+..++.||+.|.++...++.+
T Consensus 208 v~alk~~g~~~~~~~~~~~~~aglIa~i~La~iY~~L~ylGa~s~~~~~~~~nG~~IL~~~s~~~fG~~G~~lL~~iv~l 287 (431)
T COG1114 208 VNALKSKGVTTKKQIIKYTIKAGLIAAILLALIYLSLFYLGATSASAAGLAANGGQILSAYSQHLFGSYGSILLGLIVFL 287 (431)
T ss_pred HHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhhcccccchHHHHHHHHHHHhchhhHHHHHHHHHH
Confidence 3444444444433 223345666555555555555444411100000 023445567788999999999999999999
Q ss_pred HHHHHHHHHHHhhhcccCCCCC
Q 013866 107 TNLGCLIIFLIIIGDVLCGKQP 128 (435)
Q Consensus 107 ~~~g~~~~y~~~~~~~l~~l~~ 128 (435)
.|+-+++.....++|+.+++.+
T Consensus 288 ACLTTaiGLi~a~aefF~~~~p 309 (431)
T COG1114 288 ACLTTAVGLIVACAEFFSKLVP 309 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999987765
No 102
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism]
Probab=67.59 E-value=1.2e+02 Score=29.17 Aligned_cols=107 Identities=13% Similarity=0.083 Sum_probs=67.8
Q ss_pred CCCCCchHHHHHHHHHHHHhhhh-chHHHHHHhhChHHHHHHHHHHHH-HHHHHHHHHHH----HhhhcCCCCHHHHHHH
Q 013866 17 TEKRPSVSGAVFNVATSIIGAGI-MSIPATIKVLGVIPAFVLIVIIAC-LTDISVDFLMR----YTNAGETSTYAGVMRE 90 (435)
Q Consensus 17 ~~~~~s~~~~~~~l~~~~iG~Gi-L~LP~~~~~~G~~~g~i~l~~~~~-~~~~s~~~l~~----~~~~~~~~~y~~l~~~ 90 (435)
+.|+.+.+-..+....+=+++.- .+=|.+--..|..+ +++...=+ ..+.+...+.+ -+++.+.-|..|+-++
T Consensus 37 gnRsmgg~VlAmt~~aTYisaSSFigGpgaayk~Glgw--vlLa~iqvp~~~l~lgvlgkk~~~~ar~~nAltI~D~l~~ 114 (473)
T COG4145 37 GNRSMGGIVLAMTFTATYISASSFIGGPGAAYKYGLGW--VLLAMIQVPTVWLALGVLGKKFAILAREYNALTINDLLFA 114 (473)
T ss_pred ccCcccceehhhHHHHHHHHHhhhcCCCcHHHHhchHH--HHHHHHHHHHHHHHHHHhhhHHHHHHHHhCCeeHHHHHHH
Confidence 36677766666666666666544 35677766666433 33333222 23333333333 3567788888888665
Q ss_pred H-hChhHHHHHHHHHHHHHHHHHHHHHHhhhcccCC
Q 013866 91 S-FGRAGSVAVQLCVMITNLGCLIIFLIIIGDVLCG 125 (435)
Q Consensus 91 ~-~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~ 125 (435)
= =++...++..+...+...+...+-++-.++.+|.
T Consensus 115 RY~s~fl~~las~~Lifff~~~m~~qfiGgarLlE~ 150 (473)
T COG4145 115 RYQSRFLVWLASLSLIFFFVGAMTVQFIGGARLLET 150 (473)
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 5 4677888888888888888888877777777753
No 103
>PRK10263 DNA translocase FtsK; Provisional
Probab=54.32 E-value=3.8e+02 Score=30.62 Aligned_cols=24 Identities=13% Similarity=0.293 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhHh
Q 013866 254 TAVRISLVICAAIYFSVGLFGYLL 277 (435)
Q Consensus 254 ~~~~~s~~~~~~~y~~~~~~gy~~ 277 (435)
+-+....++.+.+|+.++++.|-.
T Consensus 23 ~E~~gIlLlllAlfL~lALiSYsP 46 (1355)
T PRK10263 23 LEALLILIVLFAVWLMAALLSFNP 46 (1355)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCc
Confidence 334455677788889998888865
No 104
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=50.24 E-value=2.5e+02 Score=28.50 Aligned_cols=45 Identities=13% Similarity=0.153 Sum_probs=35.5
Q ss_pred CCCHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcccCC
Q 013866 81 TSTYAGVMRESFGRAGSVAVQLCVMITNLGCLIIFLIIIGDVLCG 125 (435)
Q Consensus 81 ~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~ 125 (435)
.....++-....||++......+..+..+..+++-....+..+-.
T Consensus 324 g~p~~~i~~~~lg~k~~v~~~~l~ii~~f~~gi~s~~a~SR~v~a 368 (550)
T KOG1289|consen 324 GQPIVQIYYQALGKKGAVFLLSLIIIALFFMGISSLTASSRLVYA 368 (550)
T ss_pred CChHHHHHHHhcCCCceEehhHHHHHHHHHhhHHHHHHHHHHHhh
Confidence 556777888899999998888888888888888877777765543
No 105
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=49.55 E-value=2.9e+02 Score=27.85 Aligned_cols=32 Identities=22% Similarity=0.071 Sum_probs=24.2
Q ss_pred CCCCCCCCCCCCchHHHHHHHHHHHHhhhhch
Q 013866 10 PLLPSSKTEKRPSVSGAVFNVATSIIGAGIMS 41 (435)
Q Consensus 10 ~~~~~~~~~~~~s~~~~~~~l~~~~iG~GiL~ 41 (435)
-++..+++|.+-|.++-+..++.+.+|+|++.
T Consensus 64 irLGg~d~kPefS~~sW~aMlf~aGig~Givf 95 (485)
T PF02028_consen 64 IRLGGDDAKPEFSTFSWFAMLFCAGIGAGIVF 95 (485)
T ss_dssp SBSSSTSS--SS-HHHHHHHHHHHCSSHHHHH
T ss_pred eecCCCCCCCCCCchHHHHHHHHHHhcchhhc
Confidence 34455677888999999999999999999975
No 106
>TIGR00909 2A0306 amino acid transporter.
Probab=46.76 E-value=2.9e+02 Score=27.03 Aligned_cols=46 Identities=9% Similarity=-0.009 Sum_probs=37.1
Q ss_pred CCHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCC
Q 013866 82 STYAGVMRESFGRAGSVAVQLCVMITNLGCLIIFLIIIGDVLCGKQ 127 (435)
Q Consensus 82 ~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~l~ 127 (435)
....+..++..|+++..+..+...+..+++........+..+....
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~~~~~a 309 (429)
T TIGR00909 264 APLSLVGYDLGQGIGGLILTAGAVFSIASVMLAGIYGTSRVLFAMS 309 (429)
T ss_pred cHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777888899999999999999999999888888887665443
No 107
>PLN02680 carbon-monoxide oxygenase
Probab=45.10 E-value=2.3e+02 Score=25.34 Aligned_cols=96 Identities=15% Similarity=0.160 Sum_probs=57.6
Q ss_pred chhhhhhhhhhhhhhhhcccchhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHHhHHhHhcCCCcchhhhcCCCcCCcch
Q 013866 218 SVFDLFTAVPVIVTAFTFHFNVHPIGFEFDKPSDMITAVRISLVICAAIYFSVGLFGYLLFGESIMSDILINFDQSSGSA 297 (435)
Q Consensus 218 ~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~s~~~~~~~y~~~~~~gy~~fg~~~~~~i~~~~~~~~~~~ 297 (435)
++-.+....+.+. ..++..+. ++..+.+++.+|.+-...-....+...+|+.....+-++. ++ .|+-+
T Consensus 48 n~HPlLM~~Gfi~--l~geAIL~--yr~~~~~k~~~K~iH~~L~~lA~~l~vvGl~avfk~hn~~--~~-~nfyS----- 115 (232)
T PLN02680 48 NVHPVLMVIGLVL--LNGEAMLA--YKTVPGTKNLKKLVHLTLQFLAFCLSLIGVWAALKFHNEK--GI-DNFYS----- 115 (232)
T ss_pred echHHHHHHHHHH--HHHHHHhc--cccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--Cc-ccccc-----
Confidence 4445665555544 22222222 3444555667777888877777777788886655554433 22 22222
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhhHH
Q 013866 298 ISSLLNDLVRLSYALHLMLVFPMLNFSL 325 (435)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 325 (435)
..+|+....-.++.++.+..+....+|.
T Consensus 116 lHSWlGl~t~iL~~lQ~~~Gf~~f~~P~ 143 (232)
T PLN02680 116 LHSWLGLACLFLFSLQWAAGFVTFWYPG 143 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 2368888888888888887777666664
No 108
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=42.11 E-value=3.5e+02 Score=26.62 Aligned_cols=83 Identities=17% Similarity=0.110 Sum_probs=50.9
Q ss_pred HHHHhhhhhhhHHHHHHHHhhc------c---CCccc-ccccchhhhHHHHHHHHHHHHHhhcCC-HHHHHHhhhhhhhh
Q 013866 313 HLMLVFPMLNFSLRANIDELLF------S---QKPLL-AKDTKRFLSITLVLLVFSYTAAITIPD-IWYFFQFLGSTSAV 381 (435)
Q Consensus 313 ~~~~~~p~~~~~~~~~~~~~~~------~---~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~p~-~~~~~~~~G~~~~~ 381 (435)
+...+++.+.++........+. + +..+. ..+..|+.. .......+.+.++..|. +....+.+|++...
T Consensus 281 ~~~~~~~~~~f~~~Ai~tSFlgv~lg~~~~~~~~~~~~~~~~~r~~~-~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~ 359 (415)
T COG0814 281 SPILSIALNIFALFAIATSFLGVYLGLFEGLADLFKKSNSKPGRKKT-GLLTFLPPLIFALLYPWGFAIALGYAGGLIAT 359 (415)
T ss_pred chHHHHHHHHHHHHHHHHHHhCchhhHHHhhhHHHHhccCcccchhh-hhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHH
Confidence 3347778888888765443221 1 01111 111223332 33445566666666664 56888889989899
Q ss_pred hHHHhhhhHHHHHhc
Q 013866 382 CLAFIFPGVIVLRDV 396 (435)
Q Consensus 382 ~~~~i~P~~~~~~~~ 396 (435)
+.+-++|.+++++-+
T Consensus 360 iga~i~~~ll~~~p~ 374 (415)
T COG0814 360 IGAPIIPALLFIKPR 374 (415)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999853
No 109
>KOG3660 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms]
Probab=42.10 E-value=4.3e+02 Score=27.67 Aligned_cols=69 Identities=16% Similarity=0.161 Sum_probs=42.8
Q ss_pred CCchHHHHHHHHHHHHhhhhch-HHHHHHhhCh----HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHH
Q 013866 20 RPSVSGAVFNVATSIIGAGIMS-IPATIKVLGV----IPAFVLIVIIACLTDISVDFLMRYTNAGETSTYAGVM 88 (435)
Q Consensus 20 ~~s~~~~~~~l~~~~iG~GiL~-LP~~~~~~G~----~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~y~~l~ 88 (435)
-.+..+-.+..++-.+|-|=.= .|+.--+.|- ++=+++++++|.=..+--..+.+-..+.+...+..++
T Consensus 37 w~~~~efllS~ig~~vGlgNvwRFP~~~y~nGGgaFLIpY~i~l~l~GlP~~~LE~slGQf~~~g~v~~wrri~ 110 (629)
T KOG3660|consen 37 WKSKIEFLLSCLGYAVGLGNVWRFPYLAYKNGGGAFLIPYLIVLFLFGLPLFFLEMSLGQFTSQGPVSVWRRIC 110 (629)
T ss_pred chhHHHHHHHHHHHHhhhhHHHHHHHHHHhcCCchHHHHHHHHHHHhcchHHHHHHHHhhhhcCChHHHHHHhC
Confidence 3488899999999999999765 8988555553 3334455555555554444555544444444444333
No 110
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=41.81 E-value=2.7e+02 Score=26.59 Aligned_cols=35 Identities=20% Similarity=0.214 Sum_probs=27.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhHHhHhcCCCcchh
Q 013866 251 DMITAVRISLVICAAIYFSVGLFGYLLFGESIMSD 285 (435)
Q Consensus 251 ~~~~~~~~s~~~~~~~y~~~~~~gy~~fg~~~~~~ 285 (435)
.-++++..+...+.-.-..+...||........++
T Consensus 45 ~T~~al~~tll~alp~pl~~~~~g~~L~~~~~~~~ 79 (340)
T PF12794_consen 45 HTPRALLLTLLLALPLPLLLLAIGYLLQFAAWSSP 79 (340)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCc
Confidence 56788999999999888899999998775534443
No 111
>PRK09928 choline transport protein BetT; Provisional
Probab=40.96 E-value=4.6e+02 Score=27.69 Aligned_cols=106 Identities=20% Similarity=0.100 Sum_probs=57.9
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHHhhhhchH----HHH-HH-----hhC----hHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013866 11 LLPSSKTEKRPSVSGAVFNVATSIIGAGIMSI----PAT-IK-----VLG----VIPAFVLIVIIACLTDISVDFLMRYT 76 (435)
Q Consensus 11 ~~~~~~~~~~~s~~~~~~~l~~~~iG~GiL~L----P~~-~~-----~~G----~~~g~i~l~~~~~~~~~s~~~l~~~~ 76 (435)
.+.+++++.+-|.++-+..++.+-+|.|++.- |.. +. ..| .-.+.....+=+.+..++.+.++-..
T Consensus 83 rLG~~d~kPefS~~sW~aMLFaAGmGigLmfwgvaEP~~h~~~PP~g~~~s~eAa~~Am~~t~FHWG~~aWAiYalvgla 162 (679)
T PRK09928 83 KLGPEQSKPEFSLLSWAAMLFAAGIGIDLMFFSVAEPVTQYMQPPEGAGQTIEAARQAMVWTLFHYGLTGWSMYALMGMA 162 (679)
T ss_pred ecCCCCCCCCCCcchHHHHHHHHhhhhhheeehHHhHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 34556667888999999999999999999752 211 10 111 11344444455555555555554432
Q ss_pred ------hhcCCCCHHHHHHHHhC-----hhHHHHHHHHHHHHHHHHHHHHH
Q 013866 77 ------NAGETSTYAGVMRESFG-----RAGSVAVQLCVMITNLGCLIIFL 116 (435)
Q Consensus 77 ------~~~~~~~y~~l~~~~~G-----~~~~~~~~~~~~~~~~g~~~~y~ 116 (435)
++....+..+..+-.+| +.|+.+=.+.++.+.+|.....-
T Consensus 163 lAYf~yr~~~pl~issal~pllG~ri~G~~G~~IDi~av~~tvfGiaTSLG 213 (679)
T PRK09928 163 LGYFSYRYNLPLTIRSALYPIFGKRINGPIGHSVDIAAVIGTIFGIATTLG 213 (679)
T ss_pred HHHHhhcCCCCCchhHhhhhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHH
Confidence 12223455555555555 34544444455555555555443
No 112
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=39.84 E-value=1.4e+02 Score=29.89 Aligned_cols=38 Identities=13% Similarity=0.170 Sum_probs=28.6
Q ss_pred HHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 013866 84 YAGVMRESFGRAGSVAVQLCVMITNLGCLIIFLIIIGDV 122 (435)
Q Consensus 84 y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~ 122 (435)
-.|.+++.+|++. +.+.+...+.++|..-+.+...+..
T Consensus 275 av~Fa~~~~G~~~-~~ip~~ValS~~G~~n~~ifs~SR~ 312 (479)
T KOG1287|consen 275 AVTFADRILGVFA-WAIPFSVALSLIGSLNSVIFSSSRL 312 (479)
T ss_pred HHHHHHHhccchH-HHHHHHHHHHhhhhhhhHHHHHHHH
Confidence 3467889999988 8899999998888766555555443
No 113
>KOG4812 consensus Golgi-associated protein/Nedd4 WW domain-binding protein [General function prediction only]
Probab=39.17 E-value=61 Score=28.73 Aligned_cols=72 Identities=14% Similarity=0.153 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHh---------hhhhhhhhHHHhhhhHHHHHhcC--CCC-ch--hhhHHHHHHHHHHHH
Q 013866 352 LVLLVFSYTAAITIPDIWYFFQF---------LGSTSAVCLAFIFPGVIVLRDVH--GIS-TT--RDRIIATVMIVLAVV 417 (435)
Q Consensus 352 ~~~~~~~~~~a~~~p~~~~~~~~---------~G~~~~~~~~~i~P~~~~~~~~~--~~~-~~--~~~~~~~~~~~~g~v 417 (435)
-..++-++++|..++.++-++.+ -|+.++.-+.++= |....+ .+. +. ..+|+.|+++++|+.
T Consensus 160 d~~F~~af~vAflFnwIGFlltycl~tT~agRYGA~~GfGLsLik----wilIv~~sd~f~~y~n~q~wLwwi~~vlG~l 235 (262)
T KOG4812|consen 160 DGIFMWAFIVAFLFNWIGFLLTYCLTTTHAGRYGAISGFGLSLIK----WILIVRFSDDFESYFNGQYWLWWIFLVLGLL 235 (262)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhccchhhhe----eeEEeecccccccccccchHHHHHHHHHHHH
Confidence 34455566666666666544443 3666666666553 222111 111 11 258999999999999
Q ss_pred HHHHHhHHHH
Q 013866 418 TSTIAISTNI 427 (435)
Q Consensus 418 ~~v~g~~~~i 427 (435)
..+-+++.-+
T Consensus 236 l~lr~~i~Yi 245 (262)
T KOG4812|consen 236 LFLRGFINYI 245 (262)
T ss_pred HHHHHHHhHH
Confidence 9998887644
No 114
>PRK09928 choline transport protein BetT; Provisional
Probab=39.14 E-value=4.9e+02 Score=27.49 Aligned_cols=83 Identities=12% Similarity=0.142 Sum_probs=41.9
Q ss_pred hhHHHHHHHHH----HHHHHHHHHHh-HHhHhcCCCcchhhhcCCCcC----CcchhhhHHHHHHHHHHHHHHHHhhhhh
Q 013866 251 DMITAVRISLV----ICAAIYFSVGL-FGYLLFGESIMSDILINFDQS----SGSAISSLLNDLVRLSYALHLMLVFPML 321 (435)
Q Consensus 251 ~~~~~~~~s~~----~~~~~y~~~~~-~gy~~fg~~~~~~i~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 321 (435)
..+.+...++. -...+|.++|+ .+|..|..+.+-.+-+.+.+- .+.+.++.+..++-+.....+-++.-+-
T Consensus 136 Aa~~Am~~t~FHWG~~aWAiYalvglalAYf~yr~~~pl~issal~pllG~ri~G~~G~~IDi~av~~tvfGiaTSLGlG 215 (679)
T PRK09928 136 AARQAMVWTLFHYGLTGWSMYALMGMALGYFSYRYNLPLTIRSALYPIFGKRINGPIGHSVDIAAVIGTIFGIATTLGIG 215 (679)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhcCCCCCchhHhhhhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444442 56788888776 578888765442222222111 1122334444444444555555555555
Q ss_pred hhHHHHHHHHhh
Q 013866 322 NFSLRANIDELL 333 (435)
Q Consensus 322 ~~~~~~~~~~~~ 333 (435)
..-....++..+
T Consensus 216 v~qi~~GL~~lf 227 (679)
T PRK09928 216 VVQLNYGLSVLF 227 (679)
T ss_pred HHHHHHHHHHHc
Confidence 555555565554
No 115
>PF05805 L6_membrane: L6 membrane protein; InterPro: IPR008661 This family consists of several eukaryotic L6 membrane proteins. L6, IL-TMP, and TM4SF5 are cell surface proteins predicted to have four transmembrane domains. Previous sequence analysis led to their assignment as members of the tetraspanin superfamily it has now been found that that they are not significantly related to genuine tetraspanins, but instead constitute their own L6 family []. Several members of this family have been implicated in Homo sapiens cancer [, ].; GO: 0016021 integral to membrane
Probab=32.44 E-value=1.3e+02 Score=25.93 Aligned_cols=63 Identities=6% Similarity=0.119 Sum_probs=44.0
Q ss_pred HHHHhhhhhhhhhHHHhhhhHHHHHhcCCC----------CchhhhHHHHHHHHHHHHHHHHHhHHHHHHhhh
Q 013866 370 YFFQFLGSTSAVCLAFIFPGVIVLRDVHGI----------STTRDRIIATVMIVLAVVTSTIAISTNIYSSIR 432 (435)
Q Consensus 370 ~~~~~~G~~~~~~~~~i~P~~~~~~~~~~~----------~~~~~~~~~~~~~~~g~v~~v~g~~~~i~~i~~ 432 (435)
..+-+.|++.+.-+..++|+...+...++. .+|.+.+...+...+|++........+...+.+
T Consensus 45 ~~vw~f~Gi~GgGlmvl~pa~~~l~~~~~~cCgccg~~~c~~r~~M~~Sil~a~igi~Ga~Yc~ivS~~aL~~ 117 (195)
T PF05805_consen 45 CEVWYFGGIIGGGLMVLLPAIVFLAAGKRDCCGCCGNECCGNRCGMFLSILFAAIGILGAGYCFIVSGLALSE 117 (195)
T ss_pred hhheecCccccchHHHHHHHHHHHHhCCCcccccccCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 445577888888999999999998876552 234455667777777777777766666655543
No 116
>PRK11281 hypothetical protein; Provisional
Probab=31.67 E-value=8.1e+02 Score=27.78 Aligned_cols=30 Identities=17% Similarity=0.305 Sum_probs=24.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhHHhHhcCC
Q 013866 251 DMITAVRISLVICAAIYFSVGLFGYLLFGE 280 (435)
Q Consensus 251 ~~~~~~~~s~~~~~~~y~~~~~~gy~~fg~ 280 (435)
.-++++.++...+.-..+.+...||+.+..
T Consensus 541 ~T~~al~~t~l~alp~~l~~~~~g~~~~~~ 570 (1113)
T PRK11281 541 HTPKAILITLLLALPVTLIFLAVGLILLTD 570 (1113)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 567888888888888888888889987653
No 117
>PF03169 OPT: OPT oligopeptide transporter protein; InterPro: IPR004813 The transporter OPT family are transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. OPT1 is not a member of the ABC or PTR membrane transport families [].; GO: 0055085 transmembrane transport
Probab=30.82 E-value=3.4e+02 Score=28.38 Aligned_cols=70 Identities=11% Similarity=-0.078 Sum_probs=43.8
Q ss_pred chHHHHHHHHHHHHhhhhchHHHHH--HhhChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHhCh
Q 013866 22 SVSGAVFNVATSIIGAGIMSIPATI--KVLGVIPAFVLIVIIACLTDISVDFLMRYTNAGETSTYAGVMRESFGR 94 (435)
Q Consensus 22 s~~~~~~~l~~~~iG~GiL~LP~~~--~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~y~~l~~~~~G~ 94 (435)
.|+.....++... .++......+ .+..++..++.+++..+++..+.+...+... ++...+..+.+..+|-
T Consensus 356 ~ww~~~~~~~~~v--~~~~~~~~~~~~~~~p~~~~ilai~la~v~~~~~~~~~g~t~~-~P~~~~~~~sqli~g~ 427 (624)
T PF03169_consen 356 MWWYLAGLVVSFV--LAIIVVEAWFGQTQMPWWGLILAILLAFVFSIPSGRITGETGI-NPVSGLNILSQLIFGL 427 (624)
T ss_pred hHHHHHHHHHHHH--HHHHHHhhhhcccCCchhhhHHHHHHHHHHHHHHHHHhhhcCC-CcchhhhHHHHHHHHH
Confidence 4444444443333 3466777777 4455666777777777777777777666554 4556666777777663
No 118
>TIGR03750 conj_TIGR03750 conjugative transfer region protein, TIGR03750 family. Members of this protein family are found occasionally on plasmids. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=28.08 E-value=2.9e+02 Score=21.48 Aligned_cols=67 Identities=6% Similarity=-0.046 Sum_probs=40.6
Q ss_pred CCCCchHHHHHHHHHHHHhhhhchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCH
Q 013866 18 EKRPSVSGAVFNVATSIIGAGIMSIPATIKVLGVIPAFVLIVIIACLTDISVDFLMRYTNAGETSTY 84 (435)
Q Consensus 18 ~~~~s~~~~~~~l~~~~iG~GiL~LP~~~~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~y 84 (435)
-|+.|.-+......-+....=++++|.+....+|.....+.++...+.....--.++-.++.+..+|
T Consensus 15 ~rGlT~~El~~~~~~~~~~gl~~g~~l~~~~~~w~~~p~~~lig~~l~v~~gg~~l~rlKRGrPe~y 81 (111)
T TIGR03750 15 FRGLTADELGVAAGVGLAAGLVLGLLLALLAGPWALIPTGALLGPILVVLIGGKLLARLKRGKPEGY 81 (111)
T ss_pred ecccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHcCCCchH
Confidence 4555665555544444443345788987776688887777777777766655554444444444444
No 119
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=27.36 E-value=66 Score=20.37 Aligned_cols=28 Identities=25% Similarity=0.370 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhHhcCCC
Q 013866 254 TAVRISLVICAAIYFSVGLFGYLLFGES 281 (435)
Q Consensus 254 ~~~~~s~~~~~~~y~~~~~~gy~~fg~~ 281 (435)
.+...+..+..++..+.|..-|.+||..
T Consensus 6 ~A~~~~i~i~~lL~~~TgyaiYtaFGpp 33 (46)
T PRK13183 6 PALSLAITILAILLALTGFGIYTAFGPP 33 (46)
T ss_pred hhHHHHHHHHHHHHHHhhheeeeccCCc
Confidence 4555666777777777777888888864
No 120
>PF11085 YqhR: Conserved membrane protein YqhR; InterPro: IPR024563 This family of proteins is conserved in the Bacillaceae family of the Firmicutes. Their function is not known.
Probab=26.03 E-value=2.6e+02 Score=23.54 Aligned_cols=59 Identities=15% Similarity=0.202 Sum_probs=37.5
Q ss_pred HHHhhhhchHHHHHH-----hhChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHhChhHHHHHHHHHHH
Q 013866 33 SIIGAGIMSIPATIK-----VLGVIPAFVLIVIIACLTDISVDFLMRYTNAGETSTYAGVMRESFGRAGSVAVQLCVMI 106 (435)
Q Consensus 33 ~~iG~GiL~LP~~~~-----~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~y~~l~~~~~G~~~~~~~~~~~~~ 106 (435)
+-+|.+++..|++.. ..|-..|++++.+.+++..+-.+.+. ++.-|.|.+.+..+..+.
T Consensus 47 T~v~P~~ll~Pf~~g~wk~t~~G~~igi~~~gv~Si~aAllY~~~l---------------~k~~g~W~Gi~YG~~~W~ 110 (173)
T PF11085_consen 47 TEVGPNFLLEPFALGDWKNTWLGNLIGIVFIGVFSIVAALLYYALL---------------KKFKGPWPGILYGLAWWA 110 (173)
T ss_pred cccccChhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHhcccchHHHHHHHHHH
Confidence 357889999998854 23555566665555555554444433 456677888877776665
No 121
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=25.87 E-value=73 Score=19.93 Aligned_cols=26 Identities=19% Similarity=0.308 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHhHHhHhcCCC
Q 013866 256 VRISLVICAAIYFSVGLFGYLLFGES 281 (435)
Q Consensus 256 ~~~s~~~~~~~y~~~~~~gy~~fg~~ 281 (435)
...+..+..++..+.|...|.+||..
T Consensus 5 ~~~~i~i~~~lv~~Tgy~iYtaFGpp 30 (43)
T PF02468_consen 5 TVLAIFISCLLVSITGYAIYTAFGPP 30 (43)
T ss_pred eeHHHHHHHHHHHHHhhhhhheeCCC
Confidence 34556666777777788888899863
No 122
>PLN02351 cytochromes b561 family protein
Probab=25.70 E-value=5e+02 Score=23.39 Aligned_cols=74 Identities=14% Similarity=0.048 Sum_probs=44.5
Q ss_pred hhcCCCCchhHHHHHHHHHHHHHHHHHHHhHHhHhcCCCcchhhhcCCCcCCcchhhhHHHHHHHHHHHHHHHHhhhhhh
Q 013866 243 GFEFDKPSDMITAVRISLVICAAIYFSVGLFGYLLFGESIMSDILINFDQSSGSAISSLLNDLVRLSYALHLMLVFPMLN 322 (435)
Q Consensus 243 ~~~m~~p~~~~~~~~~s~~~~~~~y~~~~~~gy~~fg~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 322 (435)
++..+.+++.+|.+-...-...++..++|+.. .|-+ +++...|+-+ +.+|+....-.++.++-+..+....
T Consensus 73 YR~~~~~~k~~K~lH~~Lh~~Ali~~vvGl~a--~fh~--~~~~i~nlyS-----LHSWlGl~tv~Lf~lQwv~Gf~~F~ 143 (242)
T PLN02351 73 HRWLPGSRKTKKSVHLWLQGLALASGVFGIWT--KFHG--QDGIVANFYS-----LHSWMGLICVSLFGAQWLTGFMSFW 143 (242)
T ss_pred hhcccccchHHHHHHHHHHHHHHHHHHHHHHH--HHhc--ccCCccchhH-----HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44556566667777777776666666666655 3322 1222233332 2368887777778888777766655
Q ss_pred hHH
Q 013866 323 FSL 325 (435)
Q Consensus 323 ~~~ 325 (435)
.|.
T Consensus 144 ~P~ 146 (242)
T PLN02351 144 HRG 146 (242)
T ss_pred cCC
Confidence 554
No 123
>PF07954 DUF1689: Protein of unknown function (DUF1689) ; InterPro: IPR012470 Family of fungal proteins with unknown function. A member of this family has been found to localise in the mitochondria [].
Probab=25.66 E-value=1.6e+02 Score=24.32 Aligned_cols=59 Identities=12% Similarity=0.051 Sum_probs=34.7
Q ss_pred hhhhhhhhHHHhhhhHHHHHhcCCC-CchhhhHHHHHHHHHHHHHHHHHhHHHHHHhhhc
Q 013866 375 LGSTSAVCLAFIFPGVIVLRDVHGI-STTRDRIIATVMIVLAVVTSTIAISTNIYSSIRN 433 (435)
Q Consensus 375 ~G~~~~~~~~~i~P~~~~~~~~~~~-~~~~~~~~~~~~~~~g~v~~v~g~~~~i~~i~~~ 433 (435)
.|+..+...+|+.|.+.+....... ..+-.+--..+-+++|+..++.++..+-...+++
T Consensus 35 ~~g~~~~~~gF~~Pt~y~~yk~~~~~gv~~~~~~pflSf~lG~~~m~~~~~~~~k~~y~k 94 (152)
T PF07954_consen 35 LGGYGGFMAGFFAPTAYYRYKTGAIKGVPVPRQKPFLSFLLGLGAMMAGSQLAGKYQYNK 94 (152)
T ss_pred HHHHHHHHHHHhhHHHHHHHhcccccCCcCCccCcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444466677888887766411111 1111113456677888888888888776665543
No 124
>PF11990 DUF3487: Protein of unknown function (DUF3487); InterPro: IPR021877 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 121 to 136 amino acids in length. This protein has a conserved RLN sequence motif.
Probab=25.01 E-value=3.5e+02 Score=21.39 Aligned_cols=66 Identities=9% Similarity=0.057 Sum_probs=36.6
Q ss_pred CCCCchHHHHHHHHHHHHhhhhchHHHHHHhhChH-HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCH
Q 013866 18 EKRPSVSGAVFNVATSIIGAGIMSIPATIKVLGVI-PAFVLIVIIACLTDISVDFLMRYTNAGETSTY 84 (435)
Q Consensus 18 ~~~~s~~~~~~~l~~~~iG~GiL~LP~~~~~~G~~-~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~y 84 (435)
-++.|.-+......-+.+-.-++++|.++- .||+ .+..+.++..+++.+..--+++-.++.+..+|
T Consensus 18 ~rGlT~~El~~~a~~~~~~g~~~gl~la~~-~g~~a~~pt~~ll~~~~~v~~gg~~l~rlKRGKP~~y 84 (121)
T PF11990_consen 18 FRGLTADELGLAAGVGFVAGLVVGLPLALL-TGWWAMIPTGALLGPILGVFVGGKLLARLKRGKPEGY 84 (121)
T ss_pred ecCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHcCCchhH
Confidence 455666666555555544446678998888 5655 55555555555555544433333334333333
No 125
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=23.52 E-value=2.8e+02 Score=20.33 Aligned_cols=52 Identities=12% Similarity=0.176 Sum_probs=28.8
Q ss_pred hhhhhhhhhcccchhhhhhcCCCCc-hhHHHH-HHHHHHHHHHHHHHHhHHhHhcC
Q 013866 226 VPVIVTAFTFHFNVHPIGFEFDKPS-DMITAV-RISLVICAAIYFSVGLFGYLLFG 279 (435)
Q Consensus 226 ~~~~~faf~~~~~~~~i~~~m~~p~-~~~~~~-~~s~~~~~~~y~~~~~~gy~~fg 279 (435)
.+++..+-.|.....+..+.-.+|. +..|++ .+++ ...+-+.+|++.|-.||
T Consensus 17 ~GIiLL~~ACIFAfidFSK~~s~~~~~~wRalSii~F--IlG~vl~lGilifs~y~ 70 (91)
T PHA02680 17 CGVLLLTAACVFAFVDFSKNTSNVTDYVWRALSVTCF--IVGAVLLLGLFVFSMYR 70 (91)
T ss_pred HHHHHHHHHHHHhhhhhhccCCCCcchhHHHHHHHHH--HHHHHHHHHHHHHHHhc
Confidence 3444444445555556666655665 333333 3333 33445567788888888
No 126
>CHL00020 psbN photosystem II protein N
Probab=23.42 E-value=71 Score=19.95 Aligned_cols=27 Identities=22% Similarity=0.343 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHhHhcCCC
Q 013866 255 AVRISLVICAAIYFSVGLFGYLLFGES 281 (435)
Q Consensus 255 ~~~~s~~~~~~~y~~~~~~gy~~fg~~ 281 (435)
+...+..+..++..+.|..-|.+||..
T Consensus 4 A~~~~i~i~~ll~~~Tgy~iYtaFGpp 30 (43)
T CHL00020 4 ATLVAIFISGLLVSFTGYALYTAFGQP 30 (43)
T ss_pred hhhHHHHHHHHHHHhhheeeeeccCCc
Confidence 445566666777777777778888864
No 127
>PF08019 DUF1705: Domain of unknown function (DUF1705); InterPro: IPR012549 Some members of this family are putative bacterial membrane proteins. This domain is found immediately N-terminal to the sulphatase domain in many sulphatases.; GO: 0016021 integral to membrane
Probab=22.45 E-value=4.4e+02 Score=21.66 Aligned_cols=14 Identities=14% Similarity=0.242 Sum_probs=8.0
Q ss_pred HHhhhhHHHHHhcC
Q 013866 384 AFIFPGVIVLRDVH 397 (435)
Q Consensus 384 ~~i~P~~~~~~~~~ 397 (435)
.-++|+++.++.+-
T Consensus 75 ~~vlP~~~l~~~~i 88 (156)
T PF08019_consen 75 LGVLPALLLWRVRI 88 (156)
T ss_pred HHHHHHHHHHHHHh
Confidence 33467777666443
No 128
>PF00902 TatC: Sec-independent protein translocase protein (TatC); InterPro: IPR002033 Proteins encoded by the mttABC operon (formerly yigTUW), mediate a novel Sec-independent membrane targeting and translocation system in Escherichia coli that interacts with cofactor-containing redox proteins having a S/TRRXFLK "twin arginine" leader motif. This family contains the E. coli mttB gene (TATC) []. A functional Tat system or Delta pH-dependent pathway requires three integral membrane proteins: TatA/Tha4, TatB/Hcf106 and TatC/cpTatC. The TatC protein is essential for the function of both pathways. It might be involved in twin-arginine signal peptide recognition, protein translocation and proton translocation. Sequence analysis predicts that TatC contains six transmembrane helices (TMHs), and experimental data confirmed that N and C termini of TatC or cpTatC are exposed to the cytoplasmic or stromal face of the membrane. The cytoplasmic N terminus and the first cytoplasmic loop region of the E. coli TatC protein are essential for protein export. At least two TatC molecules co-exist within each Tat translocon [, ].
Probab=20.08 E-value=5.9e+02 Score=22.24 Aligned_cols=34 Identities=24% Similarity=0.394 Sum_probs=26.8
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhh
Q 013866 300 SLLNDLVRLSYALHLMLVFPMLNFSLRANIDELL 333 (435)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 333 (435)
+......++...+....+.|...+-...-+...+
T Consensus 59 e~f~~~lk~s~~~~~~~~~P~~~yq~w~Fi~PgL 92 (215)
T PF00902_consen 59 EAFFTYLKLSFFLGLIISLPYILYQIWAFIAPGL 92 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 5778888999999999999999877766555443
Done!