Query 013866
Match_columns 435
No_of_seqs 124 out of 1215
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 18:34:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013866.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013866hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 99.8 8.9E-18 3.1E-22 165.4 32.6 357 15-400 4-380 (445)
2 3gia_A Uncharacterized protein 99.7 5.3E-15 1.8E-19 145.5 29.8 352 16-398 3-368 (444)
3 4djk_A Probable glutamate/gamm 99.6 7E-12 2.4E-16 125.4 34.9 294 15-330 7-317 (511)
4 2jln_A MHP1; hydantoin, transp 98.9 1.3E-06 4.5E-11 86.4 29.0 116 9-125 15-131 (501)
5 3dh4_A Sodium/glucose cotransp 98.3 0.0047 1.6E-07 61.3 35.2 150 17-186 18-169 (530)
6 2xq2_A Sodium/glucose cotransp 97.9 0.016 5.6E-07 58.3 29.9 87 18-105 48-135 (593)
7 2a65_A Leutaa, Na(+):neurotran 91.0 12 0.00042 36.5 33.0 58 17-74 5-67 (519)
8 4ain_A Glycine betaine transpo 64.3 72 0.0025 31.1 11.9 108 10-117 85-216 (539)
9 4b4a_A TATC, SEC-independent p 57.5 94 0.0032 26.9 12.2 96 300-398 59-177 (249)
10 3tx3_A Uncharacterized protein 38.0 2E+02 0.0067 24.8 11.3 29 244-273 22-50 (249)
11 3l1l_A Arginine/agmatine antip 34.1 2.5E+02 0.0087 25.9 10.6 44 81-124 259-302 (445)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=99.83 E-value=8.9e-18 Score=165.41 Aligned_cols=357 Identities=10% Similarity=0.011 Sum_probs=214.4
Q ss_pred CCCCCCCchHHHHHHHHHHHHhhhhchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHhhh-cCCCCHHHHHHHHhC
Q 013866 15 SKTEKRPSVSGAVFNVATSIIGAGIMSIPATIKVLGVIPAFVLIVIIACLTDISVDFLMRYTNA-GETSTYAGVMRESFG 93 (435)
Q Consensus 15 ~~~~~~~s~~~~~~~l~~~~iG~GiL~LP~~~~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~-~~~~~y~~l~~~~~G 93 (435)
++++|+.+.++.+...+++++|+|++.+|....+.|. .+++.+++.+++.......+.|...+ ++..+..+.+++.+|
T Consensus 4 ~~~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~~~G~-~~~~~~li~~~~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~G 82 (445)
T 3l1l_A 4 DADAHKVGLIPVTLMVSGAIMGSGVFLLPANLASTGG-IAIYGWLVTIIGALGLSMVYAKMSFLDPSPGGSYAYARRCFG 82 (445)
T ss_dssp ---CCCBCHHHHHHHHHHHHCSSHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCTTTHHHHHHHHSC
T ss_pred CCCCCcccHHHHHHHHHHhHHhhhHHhhHHHHHHhhh-HHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCchhhHHhHcC
Confidence 3457899999999999999999999999999888896 48899999999999999999996654 456688889999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCccccchhhhhhcCccccchHHHHHHHHHHHHhccccccccchh
Q 013866 94 RAGSVAVQLCVMITNLGCLIIFLIIIGDVLCGKQPEGSVHLGVLQEWFGFHWWNTRVFALLFVMVFVMLPLALFRRVGSL 173 (435)
Q Consensus 94 ~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~l 173 (435)
|+.+++..+..++........+....++.++..+++. +.+ +......+ ..+.+.-....+..+..
T Consensus 83 ~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~-~~~~~~~~---~~~~~~~~in~~g~~~~ 147 (445)
T 3l1l_A 83 PFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPIL-----------KDP-WVLTITCV---VVLWIFVLLNIVGPKMI 147 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGG-----------GSH-HHHHHHHH---HHHHHHHHHHHHCHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccc-----------ccc-HHHHHHHH---HHHHHHHHHHHhchHHH
Confidence 9999999999999888788888888888886554321 000 11111111 11122222223344444
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCC--cccchhhhhhhhhhhhhhhhcccchhhhhhcCCCCc-
Q 013866 174 RFSSAISVLLAVIFVAICSVMAIYAVWEGKSKTPKLLPQLD--NHVSVFDLFTAVPVIVTAFTFHFNVHPIGFEFDKPS- 250 (435)
Q Consensus 174 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~- 250 (435)
..++.+.....+..+++ ..+...... +.....+..+ ...++.++..++....|+|.|.+......+|+|||+
T Consensus 148 ~~~~~~~~~~~i~~~~~---~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~r 222 (445)
T 3l1l_A 148 TRVQAVATVLALIPIVG---IAVFGWFWF--RGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKR 222 (445)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHTTSTTC--CCCCCCCC-----------HHHHHHHHHHTTTTTTHHHHGGGGBSSHHH
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHh--ChhhcccccCccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCccc
Confidence 44443333222222111 111111111 1111111111 122356788899999999999999999999999997
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhHHhHhcCCCcch----hhhcCCCcCCcchhhhHHHHHHHHHHHHHHHHhhhhhhhHHH
Q 013866 251 DMITAVRISLVICAAIYFSVGLFGYLLFGESIMS----DILINFDQSSGSAISSLLNDLVRLSYALHLMLVFPMLNFSLR 326 (435)
Q Consensus 251 ~~~~~~~~s~~~~~~~y~~~~~~gy~~fg~~~~~----~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 326 (435)
+.+|++..+..++.++|....+......+.+... +....+.. ..+++...+..+...+..+.+.....+...
T Consensus 223 ~ip~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~s 298 (445)
T 3l1l_A 223 NVPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARM----ALGDTAGAIVSFCAAAGCLGSLGGWTLLAG 298 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTSCSTTCTHHHHHHH----HHCTTHHHHHHHHHHHHHTTTHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhccCcHHHHHHHH----HhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999999988777666543211 11110000 011344455566666666666666666666
Q ss_pred HHHHHhhccCCccc-----c-cccchhhhHHHHHHHHHHHHHhh--c----CCHHHHHHhhhhhhhhhHHHhhhhHHHHH
Q 013866 327 ANIDELLFSQKPLL-----A-KDTKRFLSITLVLLVFSYTAAIT--I----PDIWYFFQFLGSTSAVCLAFIFPGVIVLR 394 (435)
Q Consensus 327 ~~~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~a~~--~----p~~~~~~~~~G~~~~~~~~~i~P~~~~~~ 394 (435)
+.+...-.++.-++ + .+.+.+.. .+...++.++... . ..++.+.++.+ ....+.|.++.+.+++
T Consensus 299 R~~~~~a~dg~lP~~~~~~~~~~~P~~a~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~y~~~~~~~~~ 374 (445)
T 3l1l_A 299 QTAKAAADDGLFPPIFARVNKAGTPVAGL--IIVGILMTIFQLSSISPNATKEFGLVSSVSV--IFTLVPYLYTCAALLL 374 (445)
T ss_dssp HHHHHHHHTTSSCGGGGCCCTTCCCHHHH--HHHHHHHHHHHHSTTSHHHHCCCHHHHHHHH--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCcHHHHhcCCCCCCHHHH--HHHHHHHHHHHHHHHcccHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 66555443222111 0 11122211 1111122222222 2 23555555543 3567888889888888
Q ss_pred hcCCCC
Q 013866 395 DVHGIS 400 (435)
Q Consensus 395 ~~~~~~ 400 (435)
.+++++
T Consensus 375 ~r~~~~ 380 (445)
T 3l1l_A 375 LGHGHF 380 (445)
T ss_dssp HHSSSS
T ss_pred HhhcCc
Confidence 765543
No 2
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=99.72 E-value=5.3e-15 Score=145.49 Aligned_cols=352 Identities=10% Similarity=0.070 Sum_probs=203.1
Q ss_pred CCCCCCchHHHHHHHHHHHHhhhhchHHHH-HHhhChHHHHHHHHHHHHHHHHHHHHHHHHhhh-cCCCCHHHHHHHHhC
Q 013866 16 KTEKRPSVSGAVFNVATSIIGAGIMSIPAT-IKVLGVIPAFVLIVIIACLTDISVDFLMRYTNA-GETSTYAGVMRESFG 93 (435)
Q Consensus 16 ~~~~~~s~~~~~~~l~~~~iG~GiL~LP~~-~~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~-~~~~~y~~l~~~~~G 93 (435)
+++|+.+.++.++..+++++|+|++..|.. ..++|. ..++.+++.+++.......+.|...+ ++.....+.+++.+|
T Consensus 3 ~~~r~l~~~~~~~l~~g~~iG~gi~~~~~~~~~~~G~-~~~~~~li~~~~~~~~~~~~~el~~~~P~~Gg~y~~~~~~~G 81 (444)
T 3gia_A 3 LKNKKLSLWEAVSMAVGVMIGASIFSIFGVGAKIAGR-NLPETFILSGIYALLVAYSYTKLGAKIVSNAGPIAFIHKAIG 81 (444)
T ss_dssp CCCCCBCHHHHHHHHHHHHHHHHTTTSHHHHHHHHGG-GHHHHHHHHHHHHHHHHHHHHHHHTTCCCTTTHHHHHHHHHC
T ss_pred ccCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHhHHHHhC
Confidence 357889999999999999999999987754 556675 68888999999999999999997654 455667788999999
Q ss_pred hh--HHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCccccchhhhhhcCccccchHHHHHHHHHHHHhccccccccc
Q 013866 94 RA--GSVAVQLCVMITNLGCLIIFLIIIGDVLCGKQPEGSVHLGVLQEWFGFHWWNTRVFALLFVMVFVMLPLALFRRVG 171 (435)
Q Consensus 94 ~~--~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~ 171 (435)
|+ +++ ..+..++........+....++.+...++.. ...+........+. ++.-....+..+
T Consensus 82 ~~~~~g~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~---~~~~~in~~g~~ 145 (444)
T 3gia_A 82 DNIITGA-LSILLWMSYVISIALFAKGFAGYFLPLINAP------------INTFNIAITEIGIV---AFFTALNFFGSK 145 (444)
T ss_dssp SSHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC------------CCHHHHHHHHHHHH---HHHHHHHHHTHH
T ss_pred cchHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC------------CchHHHHHHHHHHH---HHHHHHHHHhHH
Confidence 86 343 3466666666666667777777765443310 00000011111111 222222333444
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcccchhhhhhhhhhhhhhhhcccchhhhhhcCCCCc-
Q 013866 172 SLRFSSAISVLLAVIFVAICSVMAIYAVWEGKSKTPKLLPQLDNHVSVFDLFTAVPVIVTAFTFHFNVHPIGFEFDKPS- 250 (435)
Q Consensus 172 ~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~- 250 (435)
....+..+.....+..+++.++..+.. .+ +.+..|... ..++.+++.++....|+|.|.+......+|+|||+
T Consensus 146 ~~~~~~~~~~~~~i~~~~~~ii~~~~~---~~--~~~~~~~~~-~~g~~~~~~~~~~~~~a~~G~e~~~~~~~e~k~P~r 219 (444)
T 3gia_A 146 AVGRAEFFIVLVKLLILGLFIFAGLIT---IH--PSYVIPDLA-PSAVSGMIFASAIFFLSYMGFGVITNASEHIENPKK 219 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---CC--GGGTSCCCS-HHHHHHHHHHHHHGGGGGTHHHHHHTTGGGBSSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---cC--hhhcCCCCC-CcchHHHHHHHHHHHHHHHhHHHHHHHHHHccCccc
Confidence 444444333322222222222222221 11 111222111 13456788888999999999999999999999998
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhHHhHhcCCCcchhhhcCCCcC----CcchhhhHHHHHHHHHHHHHHHHhhhhhhhHHH
Q 013866 251 DMITAVRISLVICAAIYFSVGLFGYLLFGESIMSDILINFDQS----SGSAISSLLNDLVRLSYALHLMLVFPMLNFSLR 326 (435)
Q Consensus 251 ~~~~~~~~s~~~~~~~y~~~~~~gy~~fg~~~~~~i~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 326 (435)
+.+|++..+..++.++|....+......+.+ ++..+-+.. .....+++...+..+...+..+.+.........
T Consensus 220 ~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~---~l~~~~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~s 296 (444)
T 3gia_A 220 NVPRAIFISILIVMFVYVGVAISAIGNLPID---ELIKASENALAVAAKPFLGNLGFLLISIGALFSISSAMNATIYGGA 296 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSCHH---HHHHTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhCCCHH---HHhcccchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6999999999999999999877665554421 111110000 000112344445555666666666666566555
Q ss_pred HHHHHhhccCCccc-----ccccchhhhHHHHHHHHHHHHHhhcCCHHHHHHhhhhhhhhhHHHhhhhHHHHHhcCC
Q 013866 327 ANIDELLFSQKPLL-----AKDTKRFLSITLVLLVFSYTAAITIPDIWYFFQFLGSTSAVCLAFIFPGVIVLRDVHG 398 (435)
Q Consensus 327 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~a~~~p~~~~~~~~~G~~~~~~~~~i~P~~~~~~~~~~ 398 (435)
+.+...-.++.-+. +++.+.+. ..+...++.++.. ..+++.+.++.+. +..+.|.++.+.+++.+++
T Consensus 297 R~l~a~a~dg~lP~~f~~~~~~~P~~a--~~~~~~~~~~~~~-~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~r~~ 368 (444)
T 3gia_A 297 NVAYSLAKDGELPEFFERKVWFKSTEG--LYITSALGVLFAL-LFNMEGVASITSA--VFMVIYLFVILSHYILIDE 368 (444)
T ss_dssp HHHHHHHHHSSCCSSCCTTSCCSCTHH--HHHHHHHHHHHHH-HSCHHHHHHHHHH--HHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHCCCCCHHHhCCCCCCCcHH--HHHHHHHHHHHHH-HcCHHHHHHHHHH--HHHHHHHHHHHHHHHhhhc
Confidence 55554433222111 11112211 1111222333332 3467777666333 5567788887777775543
No 3
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=99.58 E-value=7e-12 Score=125.44 Aligned_cols=294 Identities=10% Similarity=0.026 Sum_probs=159.1
Q ss_pred CCCCCCCchHHHHHHHHHHHHhhhhchHHHHHHhhChHHHHHHHHHHHHHHH-HHHHHHHHHhh---hcCCCCHHHHHHH
Q 013866 15 SKTEKRPSVSGAVFNVATSIIGAGIMSIPATIKVLGVIPAFVLIVIIACLTD-ISVDFLMRYTN---AGETSTYAGVMRE 90 (435)
Q Consensus 15 ~~~~~~~s~~~~~~~l~~~~iG~GiL~LP~~~~~~G~~~g~i~l~~~~~~~~-~s~~~l~~~~~---~~~~~~y~~l~~~ 90 (435)
++.+|+.++++.+...++.++| +..+|. ....|.. .++..++.+++.. .....+.|... .+ .....+.+++
T Consensus 7 ~~~~r~l~~~~~~~l~~~~~ig--~~~~~~-~~~~G~~-~~~~~~i~~~~~~l~~al~~ael~s~~~~P-~GG~y~~~~~ 81 (511)
T 4djk_A 7 TGKAKQLTLLGFFAITASMVMA--VYEYPT-FATSGFS-LVFFLLLGGILWFIPVGLCAAEMATVDGWE-EGGVFAWVSN 81 (511)
T ss_dssp -----CCCHHHHHHHTGGGGCC--GGGHHH-HHTTTTH-HHHHHHHHHHHTHHHHHHHHHHHHTTSCC----CHHHHHHH
T ss_pred CccCccccHHHHHHHHHHHHHh--hchhHH-HHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHcccccCC-CCChhhhHHh
Confidence 3457889999999999999996 667776 4666753 4444444444433 36777788554 45 7788889999
Q ss_pred HhChhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCccccchhhhhhcCccccchHHHHHHHHHHHHhcccccccc
Q 013866 91 SFGRAGSVAVQLCVMITNLGCLIIFLIIIGDVLCGKQPEGSVHLGVLQEWFGFHWWNTRVFALLFVMVFVMLPLALFRRV 170 (435)
Q Consensus 91 ~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~ 170 (435)
.+||+.+++..+..++........+....++.+...+.+ ++..+.. +......+.++..+..+.+.-.|..
T Consensus 82 ~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------p~~~~~~-~~~~~~~~~~~~~~~~in~~g~~~~ 152 (511)
T 4djk_A 82 TLGPRWGFAAISFGYLQIAIGFIPMLYFVLGALSYILKW--------PALNEDP-ITKTIAALIILWALALTQFGGTKYT 152 (511)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTTTTC--------GGGTSCS-SHHHHHHHHHHHHHHHHHHTCSSSH
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------cccccCc-HHHHHHHHHHHHHHHHHHHhChHHH
Confidence 999999999999888887766666666566555433210 1111111 1111222222222223333333444
Q ss_pred chhhHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCC-----CCCCCCCCCcccchhhhhhhhhhhhhhhhcccchhhhhh
Q 013866 171 GSLRFSSA-ISVLLAVIFVAICSVMAIYAVWEGKSK-----TPKLLPQLDNHVSVFDLFTAVPVIVTAFTFHFNVHPIGF 244 (435)
Q Consensus 171 ~~l~~~s~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~ 244 (435)
.+++.+.. +.++. .+++.++..+.....++.. .....|+. ...+.+.++...+|+|.|.+......+
T Consensus 153 ~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~a~~G~e~~~~~a~ 225 (511)
T 4djk_A 153 ARIAKVGFFAGILL---PAFILIALAAIYLHSGAPVAIEMDSKTFFPDF----SKVGTLVVFVAFILSYMGVEASATHVN 225 (511)
T ss_dssp HHHTHHHHHHTTHH---HHHHHHHHHHHHTC------------CCCCCT----TSTTTTTTHHHHHHHHTTGGGGTGGGS
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHhcCCcccccCcccccCCCc----ccchHHHHHHHHHHHHhhHHHHHHHHH
Confidence 33333221 11111 1111111122221112111 11111211 112345667888999999999999999
Q ss_pred cCCCCc-hhHHHHHHHHHHHHHHHHHHHhHHhHhcCCCcch---hh---hcCCCcCCcchhhhHHHHHHHHHHHHHHHHh
Q 013866 245 EFDKPS-DMITAVRISLVICAAIYFSVGLFGYLLFGESIMS---DI---LINFDQSSGSAISSLLNDLVRLSYALHLMLV 317 (435)
Q Consensus 245 ~m~~p~-~~~~~~~~s~~~~~~~y~~~~~~gy~~fg~~~~~---~i---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (435)
|+|||+ +.+|++..+..++.++|....+......+++... .. .....+..+ ...++...+..+...+..+.+
T Consensus 226 E~k~P~k~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~ 304 (511)
T 4djk_A 226 EMSNPGRDYPLAMLLLMVAAICLSSVGGLSIAMVIPGNEINLSAGVMQTFTVLMSHVA-PEIEWTVRVISALLLLGVLAE 304 (511)
T ss_dssp SSSCCTTTHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTSCCSSSTHHHHHHHHHSSSC-SSCTTHHHHHHHHHHHHHHHH
T ss_pred hccCcccchhHHHHHHHHHHHHHHHHHHHHHHeecCHhhccccchHHHHHHHHHHHhC-ccchHHHHHHHHHHHHHHHHH
Confidence 999998 7999999999999999999888777666543221 10 000001100 000344556666666666665
Q ss_pred hhhhhhHHHHHHH
Q 013866 318 FPMLNFSLRANID 330 (435)
Q Consensus 318 ~p~~~~~~~~~~~ 330 (435)
.........+.+.
T Consensus 305 ~~~~~~~~sR~l~ 317 (511)
T 4djk_A 305 IASWIVGPSRGMY 317 (511)
T ss_dssp HHHHTTHHHHHTC
T ss_pred HHHHHHHHHHHHH
Confidence 5554454444433
No 4
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=98.92 E-value=1.3e-06 Score=86.38 Aligned_cols=116 Identities=14% Similarity=0.015 Sum_probs=86.3
Q ss_pred CCCCCCCCCCCCCchHHHHHHHHHHHHhhhhchHHHHHHh-hChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHH
Q 013866 9 APLLPSSKTEKRPSVSGAVFNVATSIIGAGIMSIPATIKV-LGVIPAFVLIVIIACLTDISVDFLMRYTNAGETSTYAGV 87 (435)
Q Consensus 9 ~~~~~~~~~~~~~s~~~~~~~l~~~~iG~GiL~LP~~~~~-~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~y~~l 87 (435)
+++.+-++++|+.++++.+..-++..++.+.+.+...+.. .++..+++..++..++...-..+......+.+.. |.++
T Consensus 15 ~~i~pvp~~~R~~~~~~~~~~W~g~~~~i~~~~~Ga~~~~GLs~~~a~lai~lG~li~~~~~~l~~~~G~~~Gl~-~~v~ 93 (501)
T 2jln_A 15 PSNAPTRYAERSVGPFSLAAIWFAMAIQVAIFIAAGQMTSSFQVWQVIVAIAAGCTIAVILLFFTQSAAIRWGIN-FTVA 93 (501)
T ss_dssp STTSCCCGGGCCBCHHHHHHHHHHHHCSTHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHTHHHHHHCCC-HHHH
T ss_pred CCCCCCChhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHhHHHhhcCCC-hhhh
Confidence 3444445567778999888888888888777766655443 4467778777777777766666665655565554 8999
Q ss_pred HHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcccCC
Q 013866 88 MRESFGRAGSVAVQLCVMITNLGCLIIFLIIIGDVLCG 125 (435)
Q Consensus 88 ~~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~ 125 (435)
.+..||+++..+..+...+.++|-..+-....++.++.
T Consensus 94 ~R~~FG~~Gs~i~~ll~~i~~igw~~v~~~~gg~al~~ 131 (501)
T 2jln_A 94 ARMPFGIRGSLIPITLKALLSLFWFGFQTWLGALALDE 131 (501)
T ss_dssp TTTTSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998888887777777777743
No 5
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=98.26 E-value=0.0047 Score=61.35 Aligned_cols=150 Identities=12% Similarity=0.081 Sum_probs=81.3
Q ss_pred CCCCCchHHHHHHHHHHHHhhhh-chHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHhChh
Q 013866 17 TEKRPSVSGAVFNVATSIIGAGI-MSIPATIKVLGVIPAFVLIVIIACLTDISVDFLMRYTNAGETSTYAGVMRESFGRA 95 (435)
Q Consensus 17 ~~~~~s~~~~~~~l~~~~iG~Gi-L~LP~~~~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~y~~l~~~~~G~~ 95 (435)
..|+.+++...+.+..+.+++.. +++|......|+......+. .++........+....++.+..|..|.-++-||++
T Consensus 18 aGR~l~~~~~~~s~~at~~Sa~~~lG~~g~~y~~G~~~~~~~~~-~~~~~~i~~~~~~p~~~~~~~~T~~e~l~~Rfg~~ 96 (530)
T 3dh4_A 18 AGKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWM-SAITLIIVGKYFLPIFIEKGIYTIPEFVEKRFNKK 96 (530)
T ss_dssp CCSCCCHHHHHHHHHHHHCSHHHHTHHHHHHHHTCGGGHHHHHH-HHHHHHHHHHHTHHHHHHTTCCSHHHHHHHHTCHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHH-HHHHHHHHHHHHHHHHHHcCCccHHHHHHHHcCcH
Confidence 37889999999988888887765 58998887788642211111 11111122233344445678899999999999999
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHhhhcccCCCCCCCccccchhhhhhcCccccchHHHHHHHHHHHHhccccccccchhh
Q 013866 96 GSVAVQLCVMIT-NLGCLIIFLIIIGDVLCGKQPEGSVHLGVLQEWFGFHWWNTRVFALLFVMVFVMLPLALFRRVGSLR 174 (435)
Q Consensus 96 ~~~~~~~~~~~~-~~g~~~~y~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~l~ 174 (435)
.+.+..+...+. .+..+.+-+...+..++.++ + ++. ...+++..++..-......++...
T Consensus 97 ~~~~~a~~~l~~~~~~~~~~~l~~~~~~~~~~~--------------G---i~~--~~~i~i~~~i~~~Yt~~GGl~aV~ 157 (530)
T 3dh4_A 97 LKTILAVFWISLYIFVNLTSVLYLGGLALETIL--------------G---IPL--MYSILGLALFALVYSIYGGLSAVV 157 (530)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHT--------------T---CCH--HHHHHHHHHHHHHTTC------CC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------------C---CCH--HHHHHHHHHHHHHHHHhcchHHHH
Confidence 988877654432 22222222222333333221 1 111 122223333445566667777777
Q ss_pred HHHHHHHHHHHH
Q 013866 175 FSSAISVLLAVI 186 (435)
Q Consensus 175 ~~s~~~~~~~~~ 186 (435)
+...+..++.+.
T Consensus 158 ~TD~iQ~~im~~ 169 (530)
T 3dh4_A 158 WTDVIQVFFLVL 169 (530)
T ss_dssp SHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777777654443
No 6
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=97.92 E-value=0.016 Score=58.32 Aligned_cols=87 Identities=10% Similarity=0.008 Sum_probs=54.1
Q ss_pred CCCCchHHHHHHHHHHHHhhhh-chHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHhChhH
Q 013866 18 EKRPSVSGAVFNVATSIIGAGI-MSIPATIKVLGVIPAFVLIVIIACLTDISVDFLMRYTNAGETSTYAGVMRESFGRAG 96 (435)
Q Consensus 18 ~~~~s~~~~~~~l~~~~iG~Gi-L~LP~~~~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~y~~l~~~~~G~~~ 96 (435)
.|+.+++...+.+..+.+++.. ++.|....+.|+......+. .++........+..-.++.+..|..|.-++=||++.
T Consensus 48 GR~l~~~~~~~Sl~at~~sa~t~lG~~g~~y~~G~~~~~~~~~-~~~~~~~~~~~~~p~~~r~~~~T~~e~l~~Rfg~~~ 126 (593)
T 2xq2_A 48 GKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWM-SAITLIIVGKYFLPIFIEKGIYTIPEFVEKRFNKKL 126 (593)
T ss_dssp ---CCHHHHHHHHHGGGSSHHHHHHHHHHHHHTCGGGGHHHHH-HHHHHHHHHHTHHHHHHHTTCCSHHHHHHHHTCHHH
T ss_pred CCCCCHHHHHHHHHHHHhcHHHHhhHhHHHHHcCHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHccCch
Confidence 6788898888888877776665 58898877788632211111 111111122333444456789999999999999998
Q ss_pred HHHHHHHHH
Q 013866 97 SVAVQLCVM 105 (435)
Q Consensus 97 ~~~~~~~~~ 105 (435)
+.+..+...
T Consensus 127 ~~~~ai~~l 135 (593)
T 2xq2_A 127 KTILAVFWI 135 (593)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 877765544
No 7
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=91.02 E-value=12 Score=36.46 Aligned_cols=58 Identities=17% Similarity=0.225 Sum_probs=38.3
Q ss_pred CCCCCchHHHHHHHHHHHHhhhh-chHHHHHHhhCh----HHHHHHHHHHHHHHHHHHHHHHH
Q 013866 17 TEKRPSVSGAVFNVATSIIGAGI-MSIPATIKVLGV----IPAFVLIVIIACLTDISVDFLMR 74 (435)
Q Consensus 17 ~~~~~s~~~~~~~l~~~~iG~Gi-L~LP~~~~~~G~----~~g~i~l~~~~~~~~~s~~~l~~ 74 (435)
|++=.|..+-++..++..+|.|- --.||...+-|- ++=+++++++|+=..+.-..+.|
T Consensus 5 R~~W~sr~~FiLa~~G~AVGLGNiWRFPyl~~~nGGgAFlipYli~l~~~GiPll~~E~alGq 67 (519)
T 2a65_A 5 REHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGR 67 (519)
T ss_dssp CCCCSCHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHHHHhcccHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34446778899999999999995 479999776663 33344444455444444445555
No 8
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A
Probab=64.27 E-value=72 Score=31.08 Aligned_cols=108 Identities=14% Similarity=0.081 Sum_probs=61.0
Q ss_pred CCCCCCCCCCCCchHHHHHHHHHHHHhhhhchH----HHHHHh--------hChHHHHHHHHHHHHHHHHHHHHHHHHh-
Q 013866 10 PLLPSSKTEKRPSVSGAVFNVATSIIGAGIMSI----PATIKV--------LGVIPAFVLIVIIACLTDISVDFLMRYT- 76 (435)
Q Consensus 10 ~~~~~~~~~~~~s~~~~~~~l~~~~iG~GiL~L----P~~~~~--------~G~~~g~i~l~~~~~~~~~s~~~l~~~~- 76 (435)
-.+.+++++.+-|.++-+..++.+-+|.|++.- |..--+ -..-.+.....+=+.+..++.+.++-..
T Consensus 85 IrLG~~d~kPefS~~sW~aMlF~AGmGiGl~FwgvaEPl~h~~~pP~~~~~eAa~~Am~~t~fHWG~~~WAiYav~glal 164 (539)
T 4ain_A 85 IRLGRIDEAPEFRTVSWISMMFAAGMGIGLMFYGTTEPLTFYRNGVPGHDEHNVGVAMSTTMFHWTLHPWAIYAIVGLAI 164 (539)
T ss_dssp CBSSCTTCCCSSCHHHHHHHHHTTSCCTHHHHHHHHHHHHHHHTCCTTSCSSCHHHHHHHHHHHHSHHHHHHHHHHHHHH
T ss_pred eecCCCCCCCCCcchHHHHHHHHHhhcchheeehhhhhHHHhcCCCCCccHHHHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 345566678889999999999999999999742 211110 0123344455555555555555554432
Q ss_pred -----hhcC-----CCCHHHHHHH-HhChhHHHHHHHHHHHHHHHHHHHHHH
Q 013866 77 -----NAGE-----TSTYAGVMRE-SFGRAGSVAVQLCVMITNLGCLIIFLI 117 (435)
Q Consensus 77 -----~~~~-----~~~y~~l~~~-~~G~~~~~~~~~~~~~~~~g~~~~y~~ 117 (435)
++.. ..=|+=++++ .-|+.++.+=.+.++.+.+|.....-.
T Consensus 165 aY~~yrk~~pl~iss~l~PllG~r~~~G~~G~~IDilav~atv~GvatSLGl 216 (539)
T 4ain_A 165 AYSTFRVGRKQLLSSAFVPLIGEKGAEGWLGKLIDILAIIATVFGTACSLGL 216 (539)
T ss_dssp HCCCCCTCCCSCTTGGGHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCcHHHHhHhhcCCCccCCcchhhhHHHHHHHHHHHHhhhHHH
Confidence 1211 1234556666 566666554444555556665555433
No 9
>4b4a_A TATC, SEC-independent protein translocase protein TATC; transport protein, TAT secretion system, protein translocati; HET: LMN; 3.50A {Aquifex aeolicus}
Probab=57.55 E-value=94 Score=26.86 Aligned_cols=96 Identities=20% Similarity=0.300 Sum_probs=54.2
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCcccccccchhhhHHHHHHHHHHHHHhh---------------
Q 013866 300 SLLNDLVRLSYALHLMLVFPMLNFSLRANIDELLFSQKPLLAKDTKRFLSITLVLLVFSYTAAIT--------------- 364 (435)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~--------------- 364 (435)
+.+....++.....++.+.|...+-...-+..-+.+++++ ...........+.......+..
T Consensus 59 e~f~~~lkvs~~~g~~~a~P~ilyQiw~Fi~PgLy~~Err---~~~~~~~~s~~LF~~G~~f~Yf~v~P~~~~Fl~~~~~ 135 (249)
T 4b4a_A 59 EPLFILIKISLAVGFIIASPVILYQFWRFIEPALYSHEKR---AFIPLLLGSILLFMLGALFAYFIVLPLALKFLLGLGF 135 (249)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCCCTT---TTHHHHHHHHHHHHHHHHHHHHTHHHHHHHTTTCSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 5777888999999999999998876655444333333321 1122222222222222222221
Q ss_pred -----cC--CHHHHHHhhhhhh-hhhHHHhhhhHHHHHhcCC
Q 013866 365 -----IP--DIWYFFQFLGSTS-AVCLAFIFPGVIVLRDVHG 398 (435)
Q Consensus 365 -----~p--~~~~~~~~~G~~~-~~~~~~i~P~~~~~~~~~~ 398 (435)
.| +.++.++++-.+. ...++|-+|.++.+-.+-+
T Consensus 136 ~~i~~~~~~~i~~Yl~fv~~l~l~fGl~FelPvi~~~L~~~G 177 (249)
T 4b4a_A 136 TQLLATPYLSVDMYISFVLKLVVAFGIAFEMPIVLYVLQKAG 177 (249)
T ss_dssp TTSSSSTTEEHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHTT
T ss_pred hhhHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 14 5565555554443 3457888999998875543
No 10
>3tx3_A Uncharacterized protein involved in cysteine BIOS; structural genomics, PSI-biology, NEW YORK consortium on MEM protein structure, nycomps; HET: LDA; 2.30A {Idiomarina loihiensis}
Probab=38.01 E-value=2e+02 Score=24.82 Aligned_cols=29 Identities=3% Similarity=-0.033 Sum_probs=20.5
Q ss_pred hcCCCCchhHHHHHHHHHHHHHHHHHHHhH
Q 013866 244 FEFDKPSDMITAVRISLVICAAIYFSVGLF 273 (435)
Q Consensus 244 ~~m~~p~~~~~~~~~s~~~~~~~y~~~~~~ 273 (435)
+.+.+| ++++.+.....+..++|......
T Consensus 22 ~~i~~p-~lr~~vl~Pllinl~L~~~~~~~ 50 (249)
T 3tx3_A 22 ELIRTK-GLRRYVVVPILTNLILFSLAFTW 50 (249)
T ss_dssp HHHTST-TTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCc-hHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666 77888888888888887665433
No 11
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=34.14 E-value=2.5e+02 Score=25.94 Aligned_cols=44 Identities=20% Similarity=0.380 Sum_probs=36.7
Q ss_pred CCCHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 013866 81 TSTYAGVMRESFGRAGSVAVQLCVMITNLGCLIIFLIIIGDVLC 124 (435)
Q Consensus 81 ~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~ 124 (435)
.....++.+..+|+++..++.+...+..+++...+....++.+.
T Consensus 259 ~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~ 302 (445)
T 3l1l_A 259 ASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAK 302 (445)
T ss_dssp TCTHHHHHHHHHCTTHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999999999999988888888777776543
Done!