BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013867
(435 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P46822|KLC_CAEEL Kinesin light chain OS=Caenorhabditis elegans GN=klc-2 PE=2 SV=2
Length = 540
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 53/113 (46%), Gaps = 10/113 (8%)
Query: 273 ALAATFA-LGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAM 331
A+AAT L L G F DAE + R L E++ G HP V L LAL+ +N+
Sbjct: 288 AVAATLNNLAVLFGKRGKFKDAEPLCKRALEIREKVLGDDHPDVAKQLNNLALLCQNQGK 347
Query: 332 QEHSSALLIQEGLYRRALEFLKAP--PLESEGVETKVDRTDIVALARGGYAEA 382
E E Y+RALE ++ P + +TK + + L +G Y EA
Sbjct: 348 YEEV------EKYYKRALEIYESKLGPDDPNVAKTKNNLSSAY-LKQGKYKEA 393
>sp|P46825|KLC_DORPE Kinesin light chain OS=Doryteuthis pealeii PE=2 SV=1
Length = 571
Score = 42.4 bits (98), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
Query: 273 ALAATFA-LGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAM 331
A+AAT L L G + DAE + R L E++ G HP V L LAL+ +N+
Sbjct: 302 AVAATLNNLAVLYGKRGKYKDAEPLCKRALVIREKVLGKDHPDVAKQLNNLALLCQNQGK 361
Query: 332 QEHSSALLIQEGLYRRALEF 351
E E Y+RALE
Sbjct: 362 YEEV------ERYYQRALEI 375
>sp|O88448|KLC2_MOUSE Kinesin light chain 2 OS=Mus musculus GN=Klc2 PE=1 SV=1
Length = 599
Score = 42.0 bits (97), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 50/111 (45%), Gaps = 14/111 (12%)
Query: 249 VLAEQKDFSDMNTLGSCNMALEE-------VALAATFA-LGQLEAHMGNFGDAEEILTRT 300
V +Q + D L + +A+ E A+AAT L L G + +AE + R
Sbjct: 248 VYRDQNKYKDAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRA 307
Query: 301 LTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEF 351
L E++ G HP V L+ LAL+ +N+ E E YRRALE
Sbjct: 308 LEIREKVLGKFHPDVAKQLSNLALLCQNQGKAEEV------EYYYRRALEI 352
>sp|Q9H0B6|KLC2_HUMAN Kinesin light chain 2 OS=Homo sapiens GN=KLC2 PE=1 SV=1
Length = 622
Score = 41.2 bits (95), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
Query: 273 ALAATFA-LGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAM 331
A+AAT L L G + +AE + R L E++ G HP V L+ LAL+ +N+
Sbjct: 280 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLSNLALLCQNQGK 339
Query: 332 QEHSSALLIQEGLYRRALEF 351
E E YRRALE
Sbjct: 340 AEEV------EYYYRRALEI 353
>sp|Q07866|KLC1_HUMAN Kinesin light chain 1 OS=Homo sapiens GN=KLC1 PE=1 SV=2
Length = 573
Score = 40.0 bits (92), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 49/111 (44%), Gaps = 14/111 (12%)
Query: 249 VLAEQKDFSDMNTLGSCNMALEEV-------ALAATFA-LGQLEAHMGNFGDAEEILTRT 300
V +Q + D L + +A+ E A+AAT L L G + +AE + R
Sbjct: 264 VYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRA 323
Query: 301 LTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEF 351
L E++ G HP V L LAL+ +N+ E E Y+RALE
Sbjct: 324 LEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEV------EYYYQRALEI 368
>sp|P37285|KLC1_RAT Kinesin light chain 1 OS=Rattus norvegicus GN=Klc1 PE=1 SV=2
Length = 560
Score = 40.0 bits (92), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 49/111 (44%), Gaps = 14/111 (12%)
Query: 249 VLAEQKDFSDMNTLGSCNMALEEV-------ALAATFA-LGQLEAHMGNFGDAEEILTRT 300
V +Q + D L + +A+ E A+AAT L L G + +AE + R
Sbjct: 264 VYRDQNKYKDAANLLNDALAIREKTLGRDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRA 323
Query: 301 LTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEF 351
L E++ G HP V L LAL+ +N+ E E Y+RALE
Sbjct: 324 LEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEV------EYYYQRALEI 368
>sp|Q2HJJ0|KLC4_BOVIN Kinesin light chain 4 OS=Bos taurus GN=KLC4 PE=2 SV=2
Length = 616
Score = 40.0 bits (92), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 57/130 (43%), Gaps = 10/130 (7%)
Query: 256 FSDMNTLGSCNMALEEVALAATFA-LGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPK 314
+D ++ + + A+AAT L L G + +AE + R L E++ G++HP
Sbjct: 273 LNDALSIRESTLGRDHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEIREKVLGTNHPD 332
Query: 315 VGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAP--PLESEGVETKVDRTDIV 372
V L LAL+ +N+ E E YRRAL + P TK +
Sbjct: 333 VAKQLNNLALLCQNQGKYE------AVERYYRRALAIYEGQLGPDNPNVARTKNNLASCY 386
Query: 373 ALARGGYAEA 382
L +G YAEA
Sbjct: 387 -LKQGKYAEA 395
>sp|Q5R581|KLC1_PONAB Kinesin light chain 1 OS=Pongo abelii GN=KLC1 PE=2 SV=3
Length = 560
Score = 40.0 bits (92), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 49/111 (44%), Gaps = 14/111 (12%)
Query: 249 VLAEQKDFSDMNTLGSCNMALEEV-------ALAATFA-LGQLEAHMGNFGDAEEILTRT 300
V +Q + D L + +A+ E A+AAT L L G + +AE + R
Sbjct: 264 VYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRA 323
Query: 301 LTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEF 351
L E++ G HP V L LAL+ +N+ E E Y+RALE
Sbjct: 324 LEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEV------EYYYQRALEI 368
>sp|P46824|KLC_DROME Kinesin light chain OS=Drosophila melanogaster GN=Klc PE=1 SV=1
Length = 508
Score = 39.7 bits (91), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 52/113 (46%), Gaps = 10/113 (8%)
Query: 273 ALAATFA-LGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAM 331
A+AAT L L G + DAE + R L E++ G HP V L LAL+ +N+
Sbjct: 268 AVAATLNNLAVLYGKRGKYKDAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGK 327
Query: 332 QEHSSALLIQEGLYRRALEFLKAP--PLESEGVETKVDRTDIVALARGGYAEA 382
+ E Y+RAL+ ++ P + +TK + L +G Y EA
Sbjct: 328 YDEV------EKYYQRALDIYESKLGPDDPNVAKTKNNLAGCY-LKQGRYTEA 373
>sp|Q05090|KLC_STRPU Kinesin light chain OS=Strongylocentrotus purpuratus PE=2 SV=1
Length = 686
Score = 39.7 bits (91), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
Query: 273 ALAATFA-LGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAM 331
A+AAT L L G + +AE + R L E++ G HP V L LAL+ +N+
Sbjct: 297 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGK 356
Query: 332 QEHSSALLIQEGLYRRALEF 351
E E Y+RALE
Sbjct: 357 YEEV------EWYYQRALEI 370
>sp|Q9NSK0|KLC4_HUMAN Kinesin light chain 4 OS=Homo sapiens GN=KLC4 PE=1 SV=3
Length = 619
Score = 38.5 bits (88), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 6/94 (6%)
Query: 256 FSDMNTLGSCNMALEEVALAATFA-LGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPK 314
+D ++ + + A+AAT L L G + +AE + R L E++ G++HP
Sbjct: 276 LNDALSIRESTLGPDHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEIREKVLGTNHPD 335
Query: 315 VGVVLTCLALMFRNKAMQE-----HSSALLIQEG 343
V L LAL+ +N+ E + AL I EG
Sbjct: 336 VAKQLNNLALLCQNQGKYEAVERYYQRALAIYEG 369
>sp|O88447|KLC1_MOUSE Kinesin light chain 1 OS=Mus musculus GN=Klc1 PE=1 SV=3
Length = 541
Score = 38.1 bits (87), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 48/109 (44%), Gaps = 14/109 (12%)
Query: 249 VLAEQKDFSDMNTLGSCNMALEEV-------ALAATFA-LGQLEAHMGNFGDAEEILTRT 300
V +Q + D L + +A+ E A+AAT L L G + +AE + R
Sbjct: 262 VYRDQNKYKDAANLLNDALAIREKTLGRDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRA 321
Query: 301 LTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRAL 349
L E++ G HP V L LAL+ +N+ E E Y+RAL
Sbjct: 322 LEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEV------EYYYQRAL 364
>sp|Q5PQM2|KLC4_RAT Kinesin light chain 4 OS=Rattus norvegicus GN=Klc4 PE=2 SV=1
Length = 619
Score = 37.4 bits (85), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 7/95 (7%)
Query: 256 FSDMNTLGSCNMALEEVALAATFA-LGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPK 314
+D ++ + + A+AAT L L G + +AE + R L E++ G+ HP
Sbjct: 276 LNDALSIRESTLGRDHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEIREKVLGTDHPD 335
Query: 315 VGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRAL 349
V L LAL+ +N+ E E Y+RAL
Sbjct: 336 VAKQLNNLALLCQNQGKYE------AVERYYQRAL 364
>sp|Q9DBS5|KLC4_MOUSE Kinesin light chain 4 OS=Mus musculus GN=Klc4 PE=1 SV=1
Length = 619
Score = 37.4 bits (85), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 7/95 (7%)
Query: 256 FSDMNTLGSCNMALEEVALAATFA-LGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPK 314
+D ++ + + A+AAT L L G + +AE + R L E++ G+ HP
Sbjct: 276 LNDALSIRESTLGRDHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEIREKVLGTDHPD 335
Query: 315 VGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRAL 349
V L LAL+ +N+ E E Y+RAL
Sbjct: 336 VAKQLNNLALLCQNQGKYE------AVERYYQRAL 364
>sp|Q91W40|KLC3_MOUSE Kinesin light chain 3 OS=Mus musculus GN=Klc3 PE=1 SV=1
Length = 508
Score = 36.6 bits (83), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 51/108 (47%), Gaps = 12/108 (11%)
Query: 243 YQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFA-LGQLEAHMGNFGDAEEILTRTL 301
Y++ E+L + + TLG E A+AAT L L G + +AE + R L
Sbjct: 265 YKEATELLHDALQIRE-QTLGP-----EHPAVAATLNNLAVLYGKRGRYREAEPLCQRAL 318
Query: 302 TKTEELFGSHHPKVGVVLTCLALMFRNKAM-----QEHSSALLIQEGL 344
E++ G+ HP V L LAL+ +N+ + ++ AL I E L
Sbjct: 319 EIREKVLGADHPDVAKQLNNLALLCQNQGKFQDVERHYARALSIYEAL 366
>sp|Q68G30|KLC3_RAT Kinesin light chain 3 OS=Rattus norvegicus GN=Klc3 PE=1 SV=1
Length = 505
Score = 36.6 bits (83), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 51/108 (47%), Gaps = 12/108 (11%)
Query: 243 YQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFA-LGQLEAHMGNFGDAEEILTRTL 301
Y++ E+L + + TLG E A+AAT L L G + +AE + R L
Sbjct: 265 YKEATELLHDALQIRE-QTLGP-----EHPAVAATLNNLAVLYGKRGRYREAEPLCQRAL 318
Query: 302 TKTEELFGSHHPKVGVVLTCLALMFRNKAM-----QEHSSALLIQEGL 344
E++ G+ HP V L LAL+ +N+ + ++ AL I E L
Sbjct: 319 EIREKVLGADHPDVAKQLNNLALLCQNQGKFQDVERHYARALSIYEAL 366
>sp|Q7TNH6|NPHP3_MOUSE Nephrocystin-3 OS=Mus musculus GN=Nphp3 PE=1 SV=2
Length = 1325
Score = 36.2 bits (82), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 61/246 (24%), Positives = 98/246 (39%), Gaps = 32/246 (13%)
Query: 111 LLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVAD 170
L A++TL ++ Y +A E+F+ + +R A LY +++
Sbjct: 1025 LEALATLYHKQNKYEQA-------EHFRKKSVIIRQQATRRKGSLY-------GFALLRR 1070
Query: 171 KCLQLCE----KHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSY 226
+ LQL E K KPEN +T + ++ +E A L+ L+ E G
Sbjct: 1071 RALQLEELTLGKDKPENARTLNELGV-LYFLQNNLETAEQFLKRSLEMRERVLGPDHPDC 1129
Query: 227 GEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFA-LGQLEA 285
+ L+ KK Y+K E+ D +A + +LA T L L
Sbjct: 1130 AQSLNNLAALCNEKKQYEKAEELYERALDIRRRA------LAPDHPSLAYTVKHLAILYK 1183
Query: 286 HMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLY 345
G A + + ++ FG HP V L LA++ + M++HS AL LY
Sbjct: 1184 KTGKVDKAVPLYELAVEIRQKSFGPKHPSVATALVNLAVL--HSQMKKHSEAL----PLY 1237
Query: 346 RRALEF 351
RAL+
Sbjct: 1238 ERALKI 1243
Score = 32.7 bits (73), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Query: 289 NFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMF--RNKAMQ-EH--SSALLIQEG 343
FGDAE++ + L +E +G+ HP L LA ++ +NK Q EH +++I++
Sbjct: 995 KFGDAEQLYKQALEISENAYGADHPHAARELEALATLYHKQNKYEQAEHFRKKSVIIRQQ 1054
Query: 344 LYRR 347
RR
Sbjct: 1055 ATRR 1058
>sp|Q6P597|KLC3_HUMAN Kinesin light chain 3 OS=Homo sapiens GN=KLC3 PE=1 SV=2
Length = 504
Score = 35.8 bits (81), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Query: 270 EEVALAATFA-LGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRN 328
E A+AAT L L G + +AE + R L E++ G+ HP V L LAL+ +N
Sbjct: 286 EHPAVAATLNNLAVLYGKRGRYREAEPLCQRALEIREKVLGADHPDVAKQLNNLALLCQN 345
Query: 329 KAMQE-----HSSALLIQEGL 344
+ E ++ AL I E L
Sbjct: 346 QGKFEDVERHYARALSIYEAL 366
>sp|Q5R8E2|KLC3_PONAB Kinesin light chain 3 OS=Pongo abelii GN=KLC3 PE=2 SV=1
Length = 504
Score = 35.8 bits (81), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Query: 270 EEVALAATFA-LGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRN 328
E A+AAT L L G + +AE + R L E++ G+ HP V L LAL+ +N
Sbjct: 286 EHPAVAATLNNLAVLYGKRGRYREAEPLCQRALEIREKVLGADHPDVAKQLNNLALLCQN 345
Query: 329 KAMQE-----HSSALLIQEGL 344
+ E ++ AL I E L
Sbjct: 346 QGKFEDVERHYARALSIYEAL 366
>sp|Q2TBQ9|KLC3_BOVIN Kinesin light chain 3 OS=Bos taurus GN=KLC3 PE=2 SV=1
Length = 505
Score = 35.8 bits (81), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Query: 270 EEVALAATFA-LGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRN 328
E A+AAT L L G + +AE + R L E++ G+ HP V L LAL+ +N
Sbjct: 286 EHPAVAATLNNLAVLYGKRGRYREAEPLCQRALEIREKVLGADHPDVAKQLNNLALLCQN 345
Query: 329 KAMQE-----HSSALLIQEGL 344
+ E ++ AL I E L
Sbjct: 346 QGKFEEVERHYARALSIYEAL 366
>sp|P0C2C1|RM30_RAT 39S ribosomal protein L30, mitochondrial OS=Rattus norvegicus
GN=Mrpl30 PE=1 SV=1
Length = 160
Score = 34.7 bits (78), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%)
Query: 171 KCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYL 230
K L L + H P+ +K +VN++ VK L+ + L GL EE + + S GE +
Sbjct: 87 KMLGLQKAHSPQIHKNIPSVNAKLKVVKHLIRIQPLKLPQGLPTEETMSSTCLKSTGELV 146
>sp|Q4R6U7|RM30_MACFA 39S ribosomal protein L30, mitochondrial OS=Macaca fascicularis
GN=MRPL30 PE=2 SV=1
Length = 161
Score = 34.7 bits (78), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 29/60 (48%)
Query: 171 KCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYL 230
K L L + H P+ +K +VNS+ VK L+ + L GL EE + S GE +
Sbjct: 87 KMLGLEKSHTPQVHKNIPSVNSKLKVVKHLIRIQPLKLPQGLPTEENMSNMYLKSTGELV 146
>sp|Q58DV5|RM30_BOVIN 39S ribosomal protein L30, mitochondrial OS=Bos taurus GN=MRPL30
PE=1 SV=1
Length = 161
Score = 34.3 bits (77), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%)
Query: 171 KCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYL 230
K L L + H P+ +K +VN++ VK L+ + L GL EE + + S GE +
Sbjct: 87 KMLGLQKAHTPQVHKNIPSVNAKLKIVKHLIRIKPLKLPQGLPTEEDMSNTCLKSTGELV 146
>sp|Q9D7N6|RM30_MOUSE 39S ribosomal protein L30, mitochondrial OS=Mus musculus GN=Mrpl30
PE=2 SV=1
Length = 160
Score = 34.3 bits (77), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%)
Query: 171 KCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYL 230
K L L + H P+ +K +VN++ VK L+ + L GL EE + + S GE +
Sbjct: 87 KMLGLQKAHSPQIHKNIPSVNAKLKVVKHLIRIQPLKLPQGLPTEETMSSTCLKSTGELV 146
>sp|Q8TCC3|RM30_HUMAN 39S ribosomal protein L30, mitochondrial OS=Homo sapiens GN=MRPL30
PE=1 SV=1
Length = 161
Score = 34.3 bits (77), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%)
Query: 171 KCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYL 230
K L L + H P+ +K +VN++ VK L+ + L GL EE + + S GE +
Sbjct: 87 KMLGLEKAHTPQVHKNIPSVNAKLKVVKHLIRIKPLKLPQGLPAEENMSNTCLKSTGELV 146
>sp|Q7Z494|NPHP3_HUMAN Nephrocystin-3 OS=Homo sapiens GN=NPHP3 PE=1 SV=1
Length = 1330
Score = 33.9 bits (76), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 18/90 (20%)
Query: 280 LGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALM------------FR 327
L + FG+AE++ + L +E +G+ HP L LA + FR
Sbjct: 991 LASVYVQWKKFGNAEQLYKQALEISENAYGADHPYTARELEALATLYQKQNKYEQAEHFR 1050
Query: 328 NKAMQEHSSALLIQEGLY------RRALEF 351
K+ + H A+ + LY RRAL+
Sbjct: 1051 KKSFKIHQKAIKKKGNLYGFALLRRRALQL 1080
Score = 33.1 bits (74), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 59/246 (23%), Positives = 97/246 (39%), Gaps = 32/246 (13%)
Query: 111 LLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVAD 170
L A++TL Y+ N K ++ E+F+ + A++ LY +++
Sbjct: 1030 LEALATL-YQKQN------KYEQAEHFRKKSFKIHQKAIKKKGNLY-------GFALLRR 1075
Query: 171 KCLQLCE----KHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSY 226
+ LQL E K P+N +T + ++ +E A L+ L+ E G
Sbjct: 1076 RALQLEELTLGKDTPDNARTLNELGV-LYYLQNNLETADQFLKRSLEMRERVLGPDHPDC 1134
Query: 227 GEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFA-LGQLEA 285
+ L+ KK Y K E+ D +A + +LA T L L
Sbjct: 1135 AQSLNNLAALCNEKKQYDKAEELYERALDIRRRA------LAPDHPSLAYTVKHLAILYK 1188
Query: 286 HMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLY 345
MG A + + ++ FG HP V L LA+++ M++H AL LY
Sbjct: 1189 KMGKLDKAVPLYELAVEIRQKSFGPKHPSVATALVNLAVLYSQ--MKKHVEAL----PLY 1242
Query: 346 RRALEF 351
RAL+
Sbjct: 1243 ERALKI 1248
>sp|Q9C9R6|PUM7_ARATH Putative pumilio homolog 7, chloroplastic OS=Arabidopsis thaliana
GN=APUM7 PE=3 SV=2
Length = 650
Score = 33.5 bits (75), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 51/107 (47%), Gaps = 18/107 (16%)
Query: 81 SYSQGMLVLEQCLST---QPSDGQLAESWRGISLLAMSTLLYESGNY-VEAIEKLQKVEN 136
++ G VL++C++ Q + +AE R LLA GNY V+ + +L+
Sbjct: 491 THRHGCCVLQKCIAYSMRQQREKLIAEISRNSLLLAQDPF----GNYAVQFVIELR---- 542
Query: 137 FKNSILGVRVAAMEA-LAGLYLQLGQDDTSSVVADKCLQLCEKHKPE 182
+ VA M A L G Y+QL SS + ++CL C + +P+
Sbjct: 543 -----IPSAVAMMLAQLKGHYVQLSMQKFSSHMVERCLMHCPESRPQ 584
>sp|P0CI65|NPHP3_DANRE Nephrocystin-3 OS=Danio rerio GN=nphp3 PE=3 SV=1
Length = 1303
Score = 32.7 bits (73), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 6/81 (7%)
Query: 276 ATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHS 335
A L L + DA + R L E+ G HP+VG L LA++ + E +
Sbjct: 1199 ALVNLAVLYCQLKQHSDALPLYERALKVYEDSLGRLHPRVGETLKNLAVLSYEEGDFEKA 1258
Query: 336 SALLIQEGLYRRALEFLKAPP 356
+ LY+RA+E +A P
Sbjct: 1259 AE------LYKRAMEIKEAEP 1273
Score = 32.3 bits (72), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 7/85 (8%)
Query: 267 MALEEVALAATFA-LGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALM 325
+A + +LA T L L G A + L E+ FG HP V L LA++
Sbjct: 1147 LAPDHPSLAYTLKHLAMLYKRRGKLEKAVPLYELALEIREKSFGPKHPSVATALVNLAVL 1206
Query: 326 FRNKAMQEHSSALLIQEGLYRRALE 350
+ +++HS AL LY RAL+
Sbjct: 1207 YCQ--LKQHSDAL----PLYERALK 1225
>sp|A0JM23|NPHP3_XENTR Nephrocystin-3 OS=Xenopus tropicalis GN=nphp3 PE=2 SV=2
Length = 1311
Score = 32.0 bits (71), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 28/50 (56%)
Query: 289 NFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSAL 338
FG+AE++ + L +E +GS H +V L LA++++ + E + L
Sbjct: 984 KFGNAEQLYKQALEISENAYGSEHMRVARELDALAVLYQKQNKFEQAEQL 1033
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.130 0.365
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 150,423,906
Number of Sequences: 539616
Number of extensions: 5973518
Number of successful extensions: 16791
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 16705
Number of HSP's gapped (non-prelim): 87
length of query: 435
length of database: 191,569,459
effective HSP length: 120
effective length of query: 315
effective length of database: 126,815,539
effective search space: 39946894785
effective search space used: 39946894785
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)