Query 013867
Match_columns 435
No_of_seqs 229 out of 346
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 08:11:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013867.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013867hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1840 Kinesin light chain [C 100.0 9.9E-33 2.2E-37 290.8 31.4 297 54-412 191-492 (508)
2 KOG1840 Kinesin light chain [C 100.0 7.5E-31 1.6E-35 276.6 28.1 259 54-363 233-492 (508)
3 KOG4626 O-linked N-acetylgluco 99.9 1.7E-22 3.6E-27 211.5 16.3 258 60-386 216-479 (966)
4 KOG4626 O-linked N-acetylgluco 99.9 2.6E-20 5.6E-25 195.2 19.5 298 29-407 159-470 (966)
5 TIGR00990 3a0801s09 mitochondr 99.8 8.9E-17 1.9E-21 174.5 26.0 257 78-389 306-568 (615)
6 TIGR00990 3a0801s09 mitochondr 99.7 2.2E-15 4.7E-20 163.7 31.4 288 61-412 126-486 (615)
7 PRK15174 Vi polysaccharide exp 99.7 2.8E-15 6.1E-20 164.5 26.9 271 55-387 72-376 (656)
8 TIGR02917 PEP_TPR_lipo putativ 99.7 2.5E-14 5.3E-19 155.8 29.1 153 221-415 737-893 (899)
9 PRK11788 tetratricopeptide rep 99.7 3E-14 6.5E-19 144.3 26.8 246 78-388 47-307 (389)
10 PRK15174 Vi polysaccharide exp 99.6 1.4E-13 3E-18 151.2 27.8 295 62-415 42-374 (656)
11 TIGR02917 PEP_TPR_lipo putativ 99.6 2.3E-13 5E-18 148.2 28.3 261 64-386 467-759 (899)
12 PRK11447 cellulose synthase su 99.6 2.3E-13 5.1E-18 157.9 30.0 139 217-386 492-660 (1157)
13 TIGR02521 type_IV_pilW type IV 99.6 2.5E-13 5.4E-18 124.1 23.6 203 55-386 24-226 (234)
14 PRK11788 tetratricopeptide rep 99.6 5.1E-13 1.1E-17 135.3 26.6 240 60-352 67-312 (389)
15 PRK11447 cellulose synthase su 99.6 2.4E-13 5.3E-18 157.8 25.9 284 62-388 385-736 (1157)
16 PF13424 TPR_12: Tetratricopep 99.6 1.6E-14 3.5E-19 114.9 9.0 74 273-353 4-77 (78)
17 PRK09782 bacteriophage N4 rece 99.6 5.4E-13 1.2E-17 151.9 25.0 258 56-386 469-734 (987)
18 TIGR02521 type_IV_pilW type IV 99.5 1.1E-11 2.4E-16 113.2 22.0 196 102-414 25-224 (234)
19 COG3063 PilF Tfp pilus assembl 99.5 6.9E-12 1.5E-16 119.7 19.9 165 55-335 28-192 (250)
20 PRK09782 bacteriophage N4 rece 99.5 1E-11 2.2E-16 141.5 24.6 237 79-388 451-702 (987)
21 PF13424 TPR_12: Tetratricopep 99.4 3E-13 6.4E-18 107.5 7.2 78 58-140 1-78 (78)
22 KOG1126 DNA-binding cell divis 99.4 2.1E-11 4.6E-16 129.9 21.4 274 59-412 314-610 (638)
23 PRK12370 invasion protein regu 99.4 6.7E-11 1.4E-15 127.6 23.8 209 78-378 273-490 (553)
24 COG3063 PilF Tfp pilus assembl 99.3 3.8E-11 8.3E-16 114.7 16.0 174 102-392 29-202 (250)
25 PRK12370 invasion protein regu 99.3 4.5E-10 9.7E-15 121.2 25.3 226 78-398 316-541 (553)
26 PRK04841 transcriptional regul 99.3 1.2E-09 2.7E-14 123.0 29.7 291 79-424 422-767 (903)
27 PRK04841 transcriptional regul 99.3 5.8E-10 1.3E-14 125.7 26.4 143 222-386 493-635 (903)
28 PRK10049 pgaA outer membrane p 99.3 3.1E-09 6.7E-14 118.9 31.5 268 67-386 88-382 (765)
29 PRK10049 pgaA outer membrane p 99.3 1.4E-09 3E-14 121.7 25.7 138 223-386 313-450 (765)
30 PF13429 TPR_15: Tetratricopep 99.2 7.7E-11 1.7E-15 115.5 10.7 256 66-386 12-271 (280)
31 KOG2002 TPR-containing nuclear 99.2 4.3E-09 9.3E-14 116.3 24.2 327 55-433 157-536 (1018)
32 TIGR03302 OM_YfiO outer membra 99.2 1.9E-09 4.1E-14 102.5 19.0 192 56-335 27-222 (235)
33 PRK11189 lipoprotein NlpI; Pro 99.2 2.3E-09 5E-14 106.9 20.0 207 58-352 60-266 (296)
34 CHL00033 ycf3 photosystem I as 99.1 3.9E-10 8.5E-15 102.7 12.0 118 221-362 36-154 (168)
35 TIGR03302 OM_YfiO outer membra 99.1 6.5E-09 1.4E-13 98.8 19.9 178 102-386 27-226 (235)
36 KOG1130 Predicted G-alpha GTPa 99.1 6.8E-10 1.5E-14 113.4 12.6 281 61-391 54-343 (639)
37 PF13374 TPR_10: Tetratricopep 99.1 1.3E-10 2.7E-15 81.0 4.8 41 274-314 2-42 (42)
38 PRK11189 lipoprotein NlpI; Pro 99.1 2.6E-08 5.7E-13 99.3 22.0 222 80-388 40-261 (296)
39 KOG1126 DNA-binding cell divis 99.0 2.1E-09 4.6E-14 114.9 14.1 240 58-386 349-614 (638)
40 KOG1130 Predicted G-alpha GTPa 99.0 2.8E-09 6.1E-14 108.9 13.6 256 79-397 30-309 (639)
41 PF14938 SNAP: Soluble NSF att 99.0 2.1E-08 4.4E-13 99.4 19.3 197 102-352 29-226 (282)
42 PRK15179 Vi polysaccharide bio 99.0 1.7E-08 3.6E-13 111.7 20.0 187 111-352 31-218 (694)
43 KOG2002 TPR-containing nuclear 99.0 1.4E-07 3E-12 104.6 25.4 274 55-385 266-552 (1018)
44 PRK10747 putative protoheme IX 99.0 3.4E-07 7.3E-12 95.1 27.1 245 78-386 130-384 (398)
45 cd05804 StaR_like StaR_like; a 99.0 9E-08 1.9E-12 96.0 22.1 210 59-349 3-213 (355)
46 PF14938 SNAP: Soluble NSF att 99.0 4E-08 8.7E-13 97.3 18.3 167 227-416 82-258 (282)
47 PRK15359 type III secretion sy 98.9 1E-08 2.2E-13 91.8 12.1 96 223-352 27-122 (144)
48 TIGR00540 hemY_coli hemY prote 98.9 2.3E-07 5E-12 96.5 24.0 242 79-356 131-404 (409)
49 CHL00033 ycf3 photosystem I as 98.9 9.2E-09 2E-13 93.6 11.6 120 275-416 36-162 (168)
50 PRK02603 photosystem I assembl 98.9 1.9E-08 4.2E-13 92.1 12.9 119 219-362 34-154 (172)
51 PRK15179 Vi polysaccharide bio 98.9 3.3E-08 7.1E-13 109.4 16.8 131 217-388 83-213 (694)
52 KOG1155 Anaphase-promoting com 98.9 1.9E-07 4.1E-12 96.9 21.0 217 78-336 274-527 (559)
53 PLN03218 maturation of RBCL 1; 98.9 6.8E-07 1.5E-11 103.2 26.8 126 223-386 617-742 (1060)
54 KOG1173 Anaphase-promoting com 98.8 8.5E-08 1.8E-12 101.3 16.9 207 102-386 306-512 (611)
55 cd05804 StaR_like StaR_like; a 98.8 2.7E-07 5.8E-12 92.6 19.9 209 104-388 2-211 (355)
56 TIGR02552 LcrH_SycD type III s 98.8 2.9E-08 6.2E-13 86.0 10.7 102 217-352 14-115 (135)
57 KOG1173 Anaphase-promoting com 98.8 1.3E-07 2.7E-12 100.0 16.4 214 55-352 305-519 (611)
58 PLN03081 pentatricopeptide (PP 98.8 1.4E-06 2.9E-11 96.6 25.0 57 109-172 159-215 (697)
59 PF13429 TPR_15: Tetratricopep 98.8 1.1E-07 2.4E-12 93.2 14.3 207 78-352 56-278 (280)
60 COG2956 Predicted N-acetylgluc 98.8 1.6E-06 3.5E-11 86.9 22.4 226 81-353 50-280 (389)
61 PLN03218 maturation of RBCL 1; 98.8 2.3E-06 4.9E-11 99.0 26.4 248 80-387 451-708 (1060)
62 KOG1125 TPR repeat-containing 98.8 4.6E-07 9.9E-12 96.1 18.8 223 79-354 298-530 (579)
63 PRK15359 type III secretion sy 98.7 8.5E-08 1.9E-12 85.9 11.3 106 239-388 12-117 (144)
64 PLN03081 pentatricopeptide (PP 98.7 8.7E-07 1.9E-11 98.1 21.1 46 79-135 272-317 (697)
65 TIGR02795 tol_pal_ybgF tol-pal 98.7 2.2E-07 4.7E-12 77.7 12.1 103 222-352 4-106 (119)
66 KOG1129 TPR repeat-containing 98.7 5.3E-08 1.2E-12 97.4 9.1 219 67-352 228-459 (478)
67 PF12688 TPR_5: Tetratrico pep 98.7 3.7E-07 7.9E-12 80.0 13.0 89 222-335 3-94 (120)
68 PRK10370 formate-dependent nit 98.6 1.2E-06 2.6E-11 82.8 15.3 102 217-352 70-174 (198)
69 cd00189 TPR Tetratricopeptide 98.6 7.5E-07 1.6E-11 68.1 11.1 96 223-352 3-98 (100)
70 KOG1839 Uncharacterized protei 98.6 3.9E-07 8.4E-12 104.0 13.1 240 38-370 905-1148(1236)
71 TIGR00540 hemY_coli hemY prote 98.6 1.3E-05 2.8E-10 83.4 23.7 174 78-303 96-292 (409)
72 PF13374 TPR_10: Tetratricopep 98.6 8.2E-08 1.8E-12 66.6 4.4 41 315-361 1-42 (42)
73 PRK02603 photosystem I assembl 98.5 1.8E-06 4E-11 79.0 14.1 91 275-383 36-126 (172)
74 PLN03077 Protein ECB2; Provisi 98.5 9.5E-06 2.1E-10 91.9 22.8 88 223-335 557-644 (857)
75 TIGR02795 tol_pal_ybgF tol-pal 98.5 1.1E-06 2.4E-11 73.4 10.7 96 276-386 4-99 (119)
76 PRK10370 formate-dependent nit 98.5 9.3E-07 2E-11 83.5 11.4 114 233-387 52-168 (198)
77 PLN03077 Protein ECB2; Provisi 98.5 3.7E-05 8.1E-10 87.1 26.0 47 79-136 235-281 (857)
78 PRK10747 putative protoheme IX 98.5 1.1E-05 2.3E-10 83.9 19.3 218 78-352 165-391 (398)
79 PRK14574 hmsH outer membrane p 98.5 2.7E-05 5.8E-10 88.1 23.4 256 60-363 244-521 (822)
80 TIGR02552 LcrH_SycD type III s 98.5 1.9E-06 4.1E-11 74.6 11.2 91 275-386 18-108 (135)
81 PF12688 TPR_5: Tetratrico pep 98.5 4.9E-06 1.1E-10 72.9 13.6 114 276-404 3-116 (120)
82 KOG0547 Translocase of outer m 98.4 9.4E-05 2E-09 77.7 24.1 104 217-354 391-494 (606)
83 PRK14574 hmsH outer membrane p 98.4 9E-05 2E-09 83.9 26.1 305 53-417 28-351 (822)
84 PLN03088 SGT1, suppressor of 98.4 2.3E-06 5.1E-11 87.8 12.2 99 226-362 8-106 (356)
85 PF13414 TPR_11: TPR repeat; P 98.4 2.2E-06 4.7E-11 66.1 8.8 64 275-352 4-68 (69)
86 PRK15363 pathogenicity island 98.4 7.9E-06 1.7E-10 74.7 13.1 110 273-403 34-149 (157)
87 PF13414 TPR_11: TPR repeat; P 98.3 3.5E-06 7.7E-11 64.9 8.9 63 221-303 4-67 (69)
88 PF09976 TPR_21: Tetratricopep 98.3 8.1E-06 1.8E-10 72.7 12.2 97 221-349 49-145 (145)
89 KOG2076 RNA polymerase III tra 98.3 0.00017 3.6E-09 80.2 24.5 245 77-381 218-544 (895)
90 PRK15363 pathogenicity island 98.3 4E-06 8.6E-11 76.6 10.2 100 219-352 34-133 (157)
91 KOG1155 Anaphase-promoting com 98.3 5E-05 1.1E-09 79.3 18.1 130 221-384 399-528 (559)
92 KOG2376 Signal recognition par 98.3 0.00011 2.4E-09 78.6 20.8 144 223-376 113-275 (652)
93 cd00189 TPR Tetratricopeptide 98.3 8.9E-06 1.9E-10 62.1 9.6 90 276-386 2-91 (100)
94 PF13432 TPR_16: Tetratricopep 98.3 3.7E-06 8.1E-11 64.2 7.3 60 279-352 2-61 (65)
95 PRK14720 transcript cleavage f 98.2 6.6E-05 1.4E-09 85.0 19.7 62 222-304 118-179 (906)
96 KOG2003 TPR repeat-containing 98.2 0.00012 2.6E-09 76.4 19.6 184 78-347 502-685 (840)
97 KOG1839 Uncharacterized protei 98.2 1.6E-05 3.5E-10 91.1 14.6 184 53-323 964-1148(1236)
98 PF12895 Apc3: Anaphase-promot 98.2 5.7E-06 1.2E-10 66.7 8.0 84 232-348 1-84 (84)
99 COG5010 TadD Flp pilus assembl 98.2 2.2E-05 4.8E-10 76.6 12.3 127 219-386 99-225 (257)
100 KOG2076 RNA polymerase III tra 98.2 0.00073 1.6E-08 75.3 25.2 91 276-388 416-508 (895)
101 KOG1129 TPR repeat-containing 98.2 0.00014 3.1E-09 73.3 18.0 75 56-136 175-251 (478)
102 KOG0547 Translocase of outer m 98.2 0.00014 3.1E-09 76.4 18.6 205 65-354 363-569 (606)
103 PRK10803 tol-pal system protei 98.1 2.7E-05 5.9E-10 76.9 12.5 103 222-352 144-247 (263)
104 PF13432 TPR_16: Tetratricopep 98.1 9.2E-06 2E-10 62.0 7.2 59 225-303 2-60 (65)
105 KOG0553 TPR repeat-containing 98.1 2.4E-05 5.2E-10 77.8 11.5 88 231-352 92-179 (304)
106 KOG2003 TPR repeat-containing 98.1 0.00026 5.6E-09 73.9 19.2 230 113-386 424-683 (840)
107 PLN03098 LPA1 LOW PSII ACCUMUL 98.1 1.2E-05 2.5E-10 84.4 9.5 74 55-137 68-141 (453)
108 KOG1941 Acetylcholine receptor 98.1 0.00056 1.2E-08 69.9 20.7 101 219-335 245-350 (518)
109 KOG1941 Acetylcholine receptor 98.1 0.00092 2E-08 68.4 22.0 260 64-386 8-269 (518)
110 PLN03098 LPA1 LOW PSII ACCUMUL 98.1 1E-05 2.3E-10 84.7 8.4 72 215-304 70-142 (453)
111 KOG0550 Molecular chaperone (D 98.1 9.6E-05 2.1E-09 76.3 14.8 283 60-386 47-344 (486)
112 KOG1125 TPR repeat-containing 98.0 0.00011 2.4E-09 78.3 15.3 208 55-314 312-538 (579)
113 COG5010 TadD Flp pilus assembl 98.0 0.00018 3.9E-09 70.4 15.3 89 219-335 133-221 (257)
114 PF09976 TPR_21: Tetratricopep 97.9 0.00025 5.4E-09 63.1 13.4 121 232-388 23-143 (145)
115 PLN03088 SGT1, suppressor of 97.9 6E-05 1.3E-09 77.5 10.4 91 277-388 5-95 (356)
116 PF12569 NARP1: NMDA receptor- 97.9 0.0042 9E-08 67.2 24.0 222 79-335 17-247 (517)
117 KOG1174 Anaphase-promoting com 97.8 0.00082 1.8E-08 69.7 16.9 81 236-351 420-500 (564)
118 KOG3616 Selective LIM binding 97.8 0.001 2.2E-08 72.9 18.1 240 110-386 663-931 (1636)
119 PLN02789 farnesyltranstransfer 97.8 0.0034 7.3E-08 63.9 20.7 174 78-329 49-230 (320)
120 PF13176 TPR_7: Tetratricopept 97.8 4E-05 8.7E-10 52.6 4.7 33 276-308 1-33 (36)
121 KOG0548 Molecular co-chaperone 97.8 0.0085 1.8E-07 63.9 23.6 220 61-335 223-445 (539)
122 COG2956 Predicted N-acetylgluc 97.8 0.0017 3.7E-08 65.6 17.3 192 78-304 81-279 (389)
123 COG3071 HemY Uncharacterized e 97.7 0.014 3.1E-07 60.2 24.2 243 78-354 130-393 (400)
124 KOG1174 Anaphase-promoting com 97.7 0.0071 1.5E-07 63.0 21.7 74 291-386 421-494 (564)
125 KOG0543 FKBP-type peptidyl-pro 97.7 0.00014 3.1E-09 74.9 9.1 108 226-352 214-321 (397)
126 COG4700 Uncharacterized protei 97.7 0.00031 6.8E-09 66.1 10.3 118 226-384 95-214 (251)
127 KOG3617 WD40 and TPR repeat-co 97.7 0.014 3.1E-07 64.9 24.1 264 105-388 855-1170(1416)
128 PF04733 Coatomer_E: Coatomer 97.6 0.00027 5.8E-09 70.9 9.9 94 233-363 180-273 (290)
129 KOG2376 Signal recognition par 97.6 0.0043 9.4E-08 66.7 19.1 101 219-329 174-275 (652)
130 PF12895 Apc3: Anaphase-promot 97.6 0.00024 5.2E-09 57.2 7.6 82 286-387 1-82 (84)
131 PF14559 TPR_19: Tetratricopep 97.6 0.00014 3.1E-09 55.6 6.0 53 231-303 2-54 (68)
132 PF13525 YfiO: Outer membrane 97.6 0.0093 2E-07 56.3 19.5 162 221-408 6-193 (203)
133 KOG0548 Molecular co-chaperone 97.6 0.0042 9.2E-08 66.1 18.5 214 107-386 223-449 (539)
134 KOG0553 TPR repeat-containing 97.6 0.00049 1.1E-08 68.6 10.9 80 188-303 99-178 (304)
135 PRK10803 tol-pal system protei 97.6 0.00061 1.3E-08 67.4 11.6 97 276-387 144-241 (263)
136 PRK10866 outer membrane biogen 97.6 0.0083 1.8E-07 58.6 19.1 188 64-298 34-236 (243)
137 PRK14720 transcript cleavage f 97.6 0.0022 4.8E-08 72.9 16.7 158 99-352 22-179 (906)
138 PRK10866 outer membrane biogen 97.5 0.0095 2.1E-07 58.2 19.1 86 223-330 35-120 (243)
139 PF13371 TPR_9: Tetratricopept 97.5 0.00045 9.7E-09 53.6 7.9 67 227-318 2-68 (73)
140 KOG4340 Uncharacterized conser 97.5 0.0097 2.1E-07 59.8 19.0 201 56-315 11-215 (459)
141 PF13525 YfiO: Outer membrane 97.5 0.015 3.3E-07 54.8 19.6 187 62-295 5-199 (203)
142 COG4700 Uncharacterized protei 97.5 0.0042 9.1E-08 58.7 15.2 129 111-303 92-222 (251)
143 PF13176 TPR_7: Tetratricopept 97.5 0.00017 3.7E-09 49.4 4.5 30 110-139 1-30 (36)
144 PF13371 TPR_9: Tetratricopept 97.4 0.00041 8.9E-09 53.8 6.5 59 280-352 1-59 (73)
145 COG2909 MalT ATP-dependent tra 97.4 0.029 6.4E-07 63.0 22.3 170 222-414 417-598 (894)
146 PF14559 TPR_19: Tetratricopep 97.3 0.0003 6.5E-09 53.8 4.4 52 79-138 4-55 (68)
147 PF09295 ChAPs: ChAPs (Chs5p-A 97.3 0.003 6.5E-08 66.0 13.1 119 224-386 173-291 (395)
148 KOG0550 Molecular chaperone (D 97.3 0.0044 9.5E-08 64.4 13.6 98 227-354 256-353 (486)
149 KOG3617 WD40 and TPR repeat-co 97.3 0.032 6.9E-07 62.3 20.4 200 80-325 814-1018(1416)
150 COG2909 MalT ATP-dependent tra 97.3 0.077 1.7E-06 59.8 23.7 262 66-392 419-688 (894)
151 KOG0543 FKBP-type peptidyl-pro 97.2 0.016 3.6E-07 60.0 17.0 98 222-352 259-356 (397)
152 PRK10153 DNA-binding transcrip 97.2 0.0052 1.1E-07 66.4 14.1 62 276-352 422-483 (517)
153 PRK10153 DNA-binding transcrip 97.2 0.0085 1.8E-07 64.8 15.0 75 221-322 421-495 (517)
154 KOG1585 Protein required for f 97.2 0.21 4.6E-06 49.2 22.7 188 107-352 30-220 (308)
155 KOG3785 Uncharacterized conser 97.1 0.02 4.4E-07 58.7 16.3 134 223-386 154-308 (557)
156 PRK15331 chaperone protein Sic 97.1 0.013 2.9E-07 54.1 13.4 111 273-404 36-148 (165)
157 PLN02789 farnesyltranstransfer 97.1 0.012 2.6E-07 59.9 14.2 131 219-388 36-167 (320)
158 COG0457 NrfG FOG: TPR repeat [ 97.1 0.14 3E-06 43.9 18.9 196 79-353 72-267 (291)
159 COG4783 Putative Zn-dependent 97.1 0.016 3.4E-07 61.3 15.1 135 80-249 320-454 (484)
160 KOG0624 dsRNA-activated protei 96.9 0.093 2E-06 53.9 18.5 220 62-352 152-371 (504)
161 KOG4162 Predicted calmodulin-b 96.9 0.31 6.6E-06 54.3 23.7 250 81-377 459-732 (799)
162 PF00515 TPR_1: Tetratricopept 96.9 0.002 4.3E-08 42.8 4.5 32 108-139 1-32 (34)
163 PRK15331 chaperone protein Sic 96.9 0.0074 1.6E-07 55.7 9.5 97 220-350 37-133 (165)
164 KOG4555 TPR repeat-containing 96.8 0.007 1.5E-07 54.3 8.8 92 280-388 49-140 (175)
165 KOG1128 Uncharacterized conser 96.8 0.047 1E-06 60.3 16.9 172 106-335 396-572 (777)
166 KOG4162 Predicted calmodulin-b 96.8 0.18 3.9E-06 56.1 21.3 139 227-395 401-545 (799)
167 KOG4555 TPR repeat-containing 96.8 0.017 3.7E-07 51.8 11.1 94 229-352 52-145 (175)
168 PF04733 Coatomer_E: Coatomer 96.8 0.056 1.2E-06 54.2 16.2 74 219-317 200-274 (290)
169 KOG3060 Uncharacterized conser 96.8 0.18 3.9E-06 49.8 18.8 186 55-325 48-239 (289)
170 PF00515 TPR_1: Tetratricopept 96.7 0.0034 7.4E-08 41.7 4.7 29 276-304 3-31 (34)
171 KOG4340 Uncharacterized conser 96.7 0.28 6.1E-06 49.6 19.7 205 54-297 36-264 (459)
172 KOG3616 Selective LIM binding 96.7 0.03 6.5E-07 61.8 13.6 190 107-303 705-911 (1636)
173 PF07719 TPR_2: Tetratricopept 96.6 0.0045 9.7E-08 40.7 4.5 32 108-139 1-32 (34)
174 KOG1127 TPR repeat-containing 96.6 0.22 4.8E-06 56.9 20.0 221 83-353 475-702 (1238)
175 PF12968 DUF3856: Domain of Un 96.6 0.13 2.9E-06 45.4 14.5 121 106-255 5-135 (144)
176 KOG3081 Vesicle coat complex C 96.5 0.12 2.7E-06 51.2 15.9 70 275-361 208-277 (299)
177 KOG3081 Vesicle coat complex C 96.5 0.21 4.5E-06 49.7 17.0 114 227-386 115-230 (299)
178 COG4783 Putative Zn-dependent 96.5 0.046 1E-06 57.9 13.3 91 217-335 337-427 (484)
179 COG0457 NrfG FOG: TPR repeat [ 96.5 0.48 1E-05 40.5 24.0 222 80-386 37-259 (291)
180 KOG4234 TPR repeat-containing 96.4 0.039 8.4E-07 52.9 11.0 95 229-352 104-198 (271)
181 KOG1586 Protein required for f 96.3 0.17 3.7E-06 49.5 15.2 153 117-300 23-180 (288)
182 KOG2047 mRNA splicing factor [ 96.3 0.4 8.7E-06 52.7 19.5 102 217-353 508-610 (835)
183 PF12569 NARP1: NMDA receptor- 96.3 0.45 9.8E-06 51.6 20.2 255 110-415 6-284 (517)
184 COG1729 Uncharacterized protei 96.3 0.048 1E-06 53.9 11.6 102 223-352 144-245 (262)
185 COG2976 Uncharacterized protei 96.3 0.18 3.8E-06 48.0 14.8 97 222-352 91-189 (207)
186 PF09986 DUF2225: Uncharacteri 96.3 0.042 9.2E-07 52.8 10.9 112 287-405 90-212 (214)
187 PF12862 Apc5: Anaphase-promot 96.2 0.031 6.7E-07 46.4 8.7 83 232-327 10-92 (94)
188 KOG0495 HAT repeat protein [RN 96.2 2.4 5.3E-05 47.0 24.8 160 219-421 650-816 (913)
189 PF13431 TPR_17: Tetratricopep 96.2 0.0045 9.9E-08 42.0 2.8 21 275-295 14-34 (34)
190 PF07719 TPR_2: Tetratricopept 96.2 0.012 2.5E-07 38.7 4.7 29 276-304 3-31 (34)
191 PF13428 TPR_14: Tetratricopep 96.1 0.012 2.6E-07 41.8 5.0 37 276-317 3-39 (44)
192 COG1729 Uncharacterized protei 96.0 0.053 1.2E-06 53.7 10.5 101 277-392 144-244 (262)
193 PF13431 TPR_17: Tetratricopep 96.0 0.0045 9.7E-08 42.0 2.1 33 89-129 2-34 (34)
194 PF09986 DUF2225: Uncharacteri 96.0 0.089 1.9E-06 50.6 11.7 102 233-354 90-197 (214)
195 PF13181 TPR_8: Tetratricopept 95.9 0.017 3.7E-07 38.1 4.7 32 108-139 1-32 (34)
196 KOG1156 N-terminal acetyltrans 95.8 0.64 1.4E-05 51.1 18.3 223 79-386 20-242 (700)
197 PF12968 DUF3856: Domain of Un 95.8 0.79 1.7E-05 40.6 15.4 110 226-352 15-130 (144)
198 PF06552 TOM20_plant: Plant sp 95.6 0.09 1.9E-06 49.4 9.6 77 274-353 25-104 (186)
199 PF09295 ChAPs: ChAPs (Chs5p-A 95.6 0.069 1.5E-06 56.0 9.8 98 55-171 196-293 (395)
200 PF08631 SPO22: Meiosis protei 95.6 0.26 5.7E-06 48.8 13.6 128 231-384 4-142 (278)
201 KOG0624 dsRNA-activated protei 95.6 3.5 7.6E-05 42.7 23.5 222 57-324 33-268 (504)
202 KOG1585 Protein required for f 95.6 1.6 3.4E-05 43.3 18.1 222 55-334 24-245 (308)
203 PF13181 TPR_8: Tetratricopept 95.5 0.028 6E-07 37.1 4.4 30 276-305 3-32 (34)
204 KOG4648 Uncharacterized conser 95.5 0.068 1.5E-06 54.8 9.0 59 227-305 104-162 (536)
205 COG3071 HemY Uncharacterized e 95.5 2.2 4.7E-05 44.5 19.9 70 216-306 324-393 (400)
206 KOG2300 Uncharacterized conser 95.5 4.5 9.9E-05 43.5 23.5 202 79-331 336-540 (629)
207 PF08631 SPO22: Meiosis protei 95.5 3 6.4E-05 41.3 22.7 101 79-180 6-117 (278)
208 KOG1586 Protein required for f 95.5 0.31 6.7E-06 47.8 12.9 134 288-433 87-235 (288)
209 COG4105 ComL DNA uptake lipopr 95.4 1.1 2.4E-05 44.2 16.9 184 78-316 46-238 (254)
210 PF12862 Apc5: Anaphase-promot 95.4 0.082 1.8E-06 43.8 7.7 62 79-140 11-73 (94)
211 PF13512 TPR_18: Tetratricopep 95.4 0.36 7.7E-06 43.7 12.2 87 223-331 13-99 (142)
212 KOG1156 N-terminal acetyltrans 95.2 0.76 1.6E-05 50.5 16.1 74 56-144 38-111 (700)
213 KOG2047 mRNA splicing factor [ 95.1 3.3 7.2E-05 45.9 20.6 148 217-388 384-536 (835)
214 KOG0495 HAT repeat protein [RN 95.1 1.4 3E-05 48.9 17.6 206 81-333 633-868 (913)
215 PF03704 BTAD: Bacterial trans 95.0 0.42 9.1E-06 42.0 11.7 113 230-359 16-134 (146)
216 PF09311 Rab5-bind: Rabaptin-l 94.9 0.061 1.3E-06 50.4 6.3 43 273-315 139-181 (181)
217 KOG1070 rRNA processing protei 94.9 2.1 4.6E-05 50.8 19.6 211 58-352 1454-1664(1710)
218 PF03704 BTAD: Bacterial trans 94.8 0.26 5.7E-06 43.3 9.8 70 221-310 63-132 (146)
219 COG4235 Cytochrome c biogenesi 94.6 0.18 3.9E-06 50.6 9.0 93 276-386 158-250 (287)
220 KOG0508 Ankyrin repeat protein 94.4 0.017 3.7E-07 60.9 1.5 122 233-367 259-383 (615)
221 PF13428 TPR_14: Tetratricopep 94.4 0.097 2.1E-06 37.1 4.8 30 110-139 3-32 (44)
222 KOG3060 Uncharacterized conser 94.4 6.1 0.00013 39.3 20.6 93 229-352 129-221 (289)
223 KOG3785 Uncharacterized conser 94.3 5.6 0.00012 41.4 19.0 48 278-333 155-202 (557)
224 KOG1128 Uncharacterized conser 94.2 0.37 8.1E-06 53.5 11.1 107 220-360 519-626 (777)
225 PRK11906 transcriptional regul 94.0 1 2.2E-05 48.0 13.5 155 233-429 271-445 (458)
226 smart00028 TPR Tetratricopepti 94.0 0.083 1.8E-06 32.1 3.5 29 276-304 3-31 (34)
227 COG4235 Cytochrome c biogenesi 94.0 0.77 1.7E-05 46.1 12.0 105 220-361 156-263 (287)
228 KOG4234 TPR repeat-containing 93.9 0.54 1.2E-05 45.2 10.1 105 106-249 93-197 (271)
229 PF06552 TOM20_plant: Plant sp 93.8 0.65 1.4E-05 43.7 10.3 34 275-308 70-107 (186)
230 COG4785 NlpI Lipoprotein NlpI, 93.7 5.9 0.00013 38.8 16.8 207 78-332 77-291 (297)
231 smart00028 TPR Tetratricopepti 93.5 0.09 2E-06 31.9 3.0 29 109-137 2-30 (34)
232 KOG4648 Uncharacterized conser 93.4 0.12 2.5E-06 53.2 5.1 61 278-352 101-161 (536)
233 PF10602 RPN7: 26S proteasome 93.3 1.2 2.5E-05 41.5 11.3 97 219-335 35-132 (177)
234 PF13174 TPR_6: Tetratricopept 93.2 0.12 2.6E-06 33.4 3.4 28 276-303 2-29 (33)
235 PF13174 TPR_6: Tetratricopept 93.0 0.14 3E-06 33.1 3.4 27 110-136 2-28 (33)
236 KOG1127 TPR repeat-containing 92.9 4 8.6E-05 47.3 16.4 222 78-353 828-1069(1238)
237 PF07721 TPR_4: Tetratricopept 92.8 0.14 3.1E-06 32.4 3.1 24 276-299 3-26 (26)
238 PF10516 SHNi-TPR: SHNi-TPR; 92.8 0.32 6.9E-06 34.1 5.1 36 276-311 3-38 (38)
239 KOG2053 Mitochondrial inherita 92.7 5.8 0.00013 45.3 17.4 71 56-138 37-107 (932)
240 PRK11906 transcriptional regul 92.3 2 4.4E-05 45.8 12.6 85 234-352 318-402 (458)
241 PF10579 Rapsyn_N: Rapsyn N-te 92.2 1.2 2.6E-05 36.4 8.4 69 60-137 4-72 (80)
242 PF10602 RPN7: 26S proteasome 92.2 0.96 2.1E-05 42.1 9.1 99 275-386 37-136 (177)
243 PF04910 Tcf25: Transcriptiona 91.8 0.68 1.5E-05 48.0 8.4 141 234-387 8-163 (360)
244 KOG2300 Uncharacterized conser 91.7 22 0.00048 38.5 25.9 242 79-378 288-540 (629)
245 PF07721 TPR_4: Tetratricopept 91.6 0.21 4.5E-06 31.6 2.8 25 109-133 2-26 (26)
246 COG3118 Thioredoxin domain-con 91.0 4.5 9.7E-05 40.9 12.8 87 229-335 143-255 (304)
247 PF10300 DUF3808: Protein of u 90.5 4.7 0.0001 43.2 13.6 112 222-356 269-382 (468)
248 PF13512 TPR_18: Tetratricopep 89.9 0.97 2.1E-05 40.9 6.5 54 79-137 23-76 (142)
249 PF10300 DUF3808: Protein of u 89.9 5.7 0.00012 42.6 13.5 79 79-165 246-324 (468)
250 PF10952 DUF2753: Protein of u 89.5 2.9 6.2E-05 37.2 8.9 77 279-361 6-89 (140)
251 PF10516 SHNi-TPR: SHNi-TPR; 89.4 0.63 1.4E-05 32.6 3.9 35 108-142 1-35 (38)
252 PF00244 14-3-3: 14-3-3 protei 89.2 0.89 1.9E-05 44.3 6.3 57 82-138 142-199 (236)
253 PF04184 ST7: ST7 protein; In 88.9 1.2 2.6E-05 47.9 7.2 82 81-166 215-315 (539)
254 COG3118 Thioredoxin domain-con 88.5 27 0.00058 35.5 16.1 78 48-133 105-193 (304)
255 PF04184 ST7: ST7 protein; In 88.1 8.1 0.00018 41.7 12.7 135 221-388 169-320 (539)
256 PF10579 Rapsyn_N: Rapsyn N-te 88.0 1.7 3.8E-05 35.5 6.1 63 231-310 17-79 (80)
257 PF00244 14-3-3: 14-3-3 protei 87.9 28 0.0006 33.9 18.4 64 290-355 142-206 (236)
258 PF14561 TPR_20: Tetratricopep 86.9 1.4 3E-05 36.6 5.1 52 275-326 23-89 (90)
259 PF13281 DUF4071: Domain of un 86.8 11 0.00024 39.4 12.8 141 67-249 184-334 (374)
260 PF10373 EST1_DNA_bind: Est1 D 86.8 2.6 5.6E-05 40.7 7.8 62 239-328 1-62 (278)
261 KOG4642 Chaperone-dependent E3 86.5 14 0.00031 36.6 12.4 90 230-353 20-109 (284)
262 PF09311 Rab5-bind: Rabaptin-l 86.2 0.89 1.9E-05 42.6 4.0 51 306-362 130-181 (181)
263 smart00101 14_3_3 14-3-3 homol 85.4 2.6 5.7E-05 41.5 7.0 56 82-137 144-200 (244)
264 KOG0508 Ankyrin repeat protein 84.3 1.1 2.5E-05 47.6 4.1 78 240-329 315-392 (615)
265 KOG0545 Aryl-hydrocarbon recep 82.6 12 0.00026 37.2 10.1 104 227-351 185-293 (329)
266 PF10952 DUF2753: Protein of u 82.2 5.8 0.00013 35.3 7.0 101 226-352 7-109 (140)
267 KOG3824 Huntingtin interacting 80.7 3 6.4E-05 42.6 5.3 61 223-303 119-179 (472)
268 KOG0545 Aryl-hydrocarbon recep 80.4 13 0.00029 36.9 9.6 95 276-383 180-284 (329)
269 COG2976 Uncharacterized protei 79.6 38 0.00083 32.5 12.1 91 278-388 93-184 (207)
270 PF04910 Tcf25: Transcriptiona 79.2 3.6 7.9E-05 42.6 5.7 64 80-144 8-76 (360)
271 cd02683 MIT_1 MIT: domain cont 79.0 17 0.00036 29.3 8.3 53 276-328 8-61 (77)
272 cd02680 MIT_calpain7_2 MIT: do 78.9 16 0.00034 29.6 8.0 31 286-319 18-48 (75)
273 KOG3824 Huntingtin interacting 78.2 4.2 9.2E-05 41.5 5.5 60 279-352 121-180 (472)
274 PF07720 TPR_3: Tetratricopept 77.2 6.4 0.00014 27.1 4.6 22 223-244 4-25 (36)
275 PF12854 PPR_1: PPR repeat 77.0 4.3 9.3E-05 27.2 3.7 26 108-133 7-32 (34)
276 PF11207 DUF2989: Protein of u 76.6 15 0.00032 35.2 8.5 57 277-340 144-200 (203)
277 KOG1464 COP9 signalosome, subu 76.5 93 0.002 31.7 19.8 57 81-141 42-98 (440)
278 smart00101 14_3_3 14-3-3 homol 76.5 12 0.00025 36.9 8.1 65 290-356 144-209 (244)
279 PF04212 MIT: MIT (microtubule 75.9 9 0.0002 29.7 5.8 33 107-139 4-36 (69)
280 PF04190 DUF410: Protein of un 75.9 53 0.0011 32.4 12.6 22 278-299 94-115 (260)
281 cd09034 BRO1_Alix_like Protein 75.8 61 0.0013 32.8 13.5 79 276-354 113-225 (345)
282 KOG2471 TPR repeat-containing 75.8 4 8.7E-05 44.0 4.8 78 224-305 287-366 (696)
283 PF14853 Fis1_TPR_C: Fis1 C-te 75.3 5.7 0.00012 29.8 4.3 28 276-303 3-30 (53)
284 PF04212 MIT: MIT (microtubule 75.3 15 0.00033 28.4 7.0 53 277-329 8-61 (69)
285 KOG2610 Uncharacterized conser 74.8 50 0.0011 34.4 12.1 99 217-347 172-272 (491)
286 cd02678 MIT_VPS4 MIT: domain c 74.6 26 0.00056 27.8 8.3 50 279-328 11-61 (75)
287 PF07720 TPR_3: Tetratricopept 74.3 9.3 0.0002 26.3 4.8 22 277-298 4-25 (36)
288 TIGR03504 FimV_Cterm FimV C-te 74.1 5.1 0.00011 28.9 3.6 25 278-302 3-27 (44)
289 PF12854 PPR_1: PPR repeat 73.9 5.1 0.00011 26.9 3.4 25 275-299 8-32 (34)
290 KOG4563 Cell cycle-regulated h 73.8 11 0.00025 39.1 7.4 61 274-334 41-101 (400)
291 KOG2796 Uncharacterized conser 73.7 58 0.0012 33.0 11.9 136 217-386 174-309 (366)
292 PF10373 EST1_DNA_bind: Est1 D 73.6 5.3 0.00011 38.6 4.9 46 85-138 1-46 (278)
293 KOG4642 Chaperone-dependent E3 73.2 34 0.00073 34.0 10.1 90 79-180 23-112 (284)
294 KOG1915 Cell cycle control pro 73.1 1.5E+02 0.0032 32.5 18.0 188 76-312 83-297 (677)
295 PF11207 DUF2989: Protein of u 72.8 17 0.00037 34.9 7.8 78 298-385 123-200 (203)
296 PF05843 Suf: Suppressor of fo 72.2 37 0.00081 33.6 10.6 105 217-352 32-137 (280)
297 KOG0276 Vesicle coat complex C 71.5 35 0.00075 38.0 10.6 81 278-393 670-753 (794)
298 cd02681 MIT_calpain7_1 MIT: do 71.0 41 0.0009 27.1 8.6 43 277-319 9-53 (76)
299 cd02684 MIT_2 MIT: domain cont 69.4 37 0.00079 27.2 8.0 49 280-328 12-61 (75)
300 KOG2041 WD40 repeat protein [G 68.9 30 0.00065 39.1 9.5 93 234-347 748-877 (1189)
301 PF11817 Foie-gras_1: Foie gra 67.3 59 0.0013 31.6 10.7 53 82-136 154-206 (247)
302 PF05843 Suf: Suppressor of fo 67.0 38 0.00083 33.5 9.4 94 225-352 6-100 (280)
303 PF12753 Nro1: Nuclear pore co 66.7 9.8 0.00021 40.0 5.2 54 292-353 329-386 (404)
304 PF14561 TPR_20: Tetratricopep 66.6 12 0.00025 31.0 4.8 57 58-118 18-89 (90)
305 PF13281 DUF4071: Domain of un 66.3 1.8E+02 0.0038 30.6 16.9 54 81-134 114-167 (374)
306 PF02259 FAT: FAT domain; Int 66.1 1.4E+02 0.0031 29.4 21.6 105 219-331 183-307 (352)
307 PF01535 PPR: PPR repeat; Int 66.0 7.8 0.00017 24.1 2.9 25 110-134 2-26 (31)
308 KOG2471 TPR repeat-containing 65.7 6.3 0.00014 42.5 3.6 109 227-354 247-367 (696)
309 smart00745 MIT Microtubule Int 65.5 54 0.0012 25.7 8.3 50 279-328 13-63 (77)
310 cd02656 MIT MIT: domain contai 65.3 45 0.00097 26.1 7.8 51 278-328 10-61 (75)
311 cd02682 MIT_AAA_Arch MIT: doma 64.8 16 0.00035 29.5 5.1 32 107-138 5-36 (75)
312 TIGR03504 FimV_Cterm FimV C-te 64.5 11 0.00024 27.2 3.7 24 112-135 3-26 (44)
313 PF11817 Foie-gras_1: Foie gra 64.4 1.3E+02 0.0029 29.1 12.5 82 237-334 155-236 (247)
314 COG4785 NlpI Lipoprotein NlpI, 64.3 9.7 0.00021 37.3 4.3 87 275-382 66-152 (297)
315 KOG2460 Signal recognition par 64.1 2.3E+02 0.005 31.2 15.4 70 235-310 379-458 (593)
316 KOG2168 Cullins [Cell cycle co 62.6 79 0.0017 36.4 11.6 29 106-134 620-648 (835)
317 PF07079 DUF1347: Protein of u 62.6 2.3E+02 0.0051 30.8 15.4 58 221-299 461-520 (549)
318 TIGR00756 PPR pentatricopeptid 62.1 12 0.00027 23.5 3.4 25 110-134 2-26 (35)
319 cd02682 MIT_AAA_Arch MIT: doma 62.1 22 0.00048 28.7 5.4 34 276-309 8-41 (75)
320 PF14853 Fis1_TPR_C: Fis1 C-te 61.5 18 0.00039 27.1 4.5 29 110-138 3-31 (53)
321 KOG4507 Uncharacterized conser 61.0 13 0.00029 41.0 5.1 87 221-333 213-300 (886)
322 PF15015 NYD-SP12_N: Spermatog 60.0 1.5E+02 0.0033 31.9 12.3 114 220-345 176-292 (569)
323 KOG2114 Vacuolar assembly/sort 59.8 22 0.00047 40.7 6.6 32 218-249 366-397 (933)
324 KOG2053 Mitochondrial inherita 59.6 25 0.00055 40.4 7.1 81 287-388 22-102 (932)
325 cd02677 MIT_SNX15 MIT: domain 58.7 94 0.002 24.9 8.9 43 278-320 10-53 (75)
326 cd02681 MIT_calpain7_1 MIT: do 58.4 27 0.00059 28.2 5.3 35 60-98 4-38 (76)
327 KOG1308 Hsp70-interacting prot 58.2 7 0.00015 40.4 2.3 79 286-385 126-204 (377)
328 cd02683 MIT_1 MIT: domain cont 57.9 24 0.00051 28.4 4.9 32 107-138 5-36 (77)
329 KOG0551 Hsp90 co-chaperone CNS 57.3 76 0.0017 33.0 9.4 77 61-146 80-157 (390)
330 PRK13184 pknD serine/threonine 57.2 46 0.001 39.0 8.9 74 276-363 514-589 (932)
331 smart00745 MIT Microtubule Int 56.0 27 0.00059 27.4 5.0 30 109-138 9-38 (77)
332 PF01535 PPR: PPR repeat; Int 55.4 15 0.00033 22.8 2.8 25 277-301 3-27 (31)
333 PF13041 PPR_2: PPR repeat fam 55.4 20 0.00044 25.5 3.8 27 109-135 4-30 (50)
334 PF04097 Nic96: Nup93/Nic96; 54.6 75 0.0016 35.4 9.8 33 102-134 408-440 (613)
335 KOG0551 Hsp90 co-chaperone CNS 53.9 1.1E+02 0.0024 31.8 10.0 50 277-331 84-134 (390)
336 cd02679 MIT_spastin MIT: domai 53.5 18 0.0004 29.4 3.6 28 117-144 17-44 (79)
337 KOG1308 Hsp70-interacting prot 53.5 5.5 0.00012 41.1 0.7 138 231-405 125-272 (377)
338 KOG1070 rRNA processing protei 53.3 5.3E+02 0.012 32.0 19.6 165 55-249 1493-1663(1710)
339 KOG1538 Uncharacterized conser 53.3 2.1E+02 0.0046 32.4 12.5 71 280-373 779-850 (1081)
340 PF13041 PPR_2: PPR repeat fam 53.0 23 0.00049 25.2 3.7 28 275-302 4-31 (50)
341 PF10345 Cohesin_load: Cohesin 52.9 3.6E+02 0.0077 29.8 25.1 208 78-335 373-596 (608)
342 KOG2610 Uncharacterized conser 52.6 2.3E+02 0.0051 29.7 12.0 65 221-303 210-276 (491)
343 cd02678 MIT_VPS4 MIT: domain c 51.7 40 0.00086 26.7 5.3 30 109-138 7-36 (75)
344 cd02684 MIT_2 MIT: domain cont 51.7 32 0.0007 27.5 4.8 48 60-111 4-52 (75)
345 PF14357 DUF4404: Domain of un 50.8 16 0.00035 30.0 3.0 25 306-330 60-84 (85)
346 cd02656 MIT MIT: domain contai 50.2 40 0.00086 26.4 5.1 31 108-138 6-36 (75)
347 KOG3364 Membrane protein invol 49.2 73 0.0016 29.0 7.0 69 60-136 30-99 (149)
348 KOG4507 Uncharacterized conser 48.7 29 0.00062 38.5 5.1 96 224-352 610-706 (886)
349 KOG3783 Uncharacterized conser 48.7 60 0.0013 35.5 7.6 69 279-353 454-522 (546)
350 PF13812 PPR_3: Pentatricopept 47.7 34 0.00074 21.6 3.7 26 109-134 2-27 (34)
351 PF08969 USP8_dimer: USP8 dime 45.8 41 0.0009 28.8 4.9 41 315-362 37-77 (115)
352 KOG1464 COP9 signalosome, subu 45.8 3.5E+02 0.0076 27.7 14.8 128 233-382 118-250 (440)
353 PF10345 Cohesin_load: Cohesin 45.4 4.6E+02 0.01 29.0 30.5 308 60-387 57-428 (608)
354 COG0790 FOG: TPR repeat, SEL1 44.6 3E+02 0.0066 26.6 18.6 62 63-134 74-139 (292)
355 cd02680 MIT_calpain7_2 MIT: do 44.4 38 0.00082 27.3 4.1 20 118-137 16-35 (75)
356 PF09670 Cas_Cas02710: CRISPR- 44.1 3.9E+02 0.0086 27.8 16.2 63 64-136 133-197 (379)
357 PF14346 DUF4398: Domain of un 43.2 87 0.0019 26.1 6.4 60 79-138 16-75 (103)
358 COG5159 RPN6 26S proteasome re 41.1 4.2E+02 0.0092 27.3 16.4 209 113-354 8-238 (421)
359 PF02259 FAT: FAT domain; Int 40.8 3.6E+02 0.0079 26.5 24.3 74 218-307 144-218 (352)
360 PF05053 Menin: Menin; InterP 40.3 1.2E+02 0.0026 33.5 8.3 86 233-335 250-337 (618)
361 PF09670 Cas_Cas02710: CRISPR- 40.0 4.5E+02 0.0099 27.4 14.3 59 227-303 138-198 (379)
362 KOG3783 Uncharacterized conser 39.0 1.3E+02 0.0028 33.1 8.2 66 225-303 454-520 (546)
363 COG0790 FOG: TPR repeat, SEL1 37.9 2.8E+02 0.0061 26.9 10.0 135 233-407 90-236 (292)
364 PF07079 DUF1347: Protein of u 37.4 5.8E+02 0.013 27.9 16.3 91 227-327 86-178 (549)
365 PF12739 TRAPPC-Trs85: ER-Golg 37.3 5.1E+02 0.011 27.2 13.7 101 223-335 211-319 (414)
366 PF12753 Nro1: Nuclear pore co 36.8 77 0.0017 33.5 6.0 75 237-322 328-403 (404)
367 PRK10941 hypothetical protein; 36.7 2.3E+02 0.005 28.2 9.2 59 269-335 176-234 (269)
368 COG3629 DnrI DNA-binding trans 36.7 2.3E+02 0.0049 28.6 9.1 76 274-363 153-229 (280)
369 PF08311 Mad3_BUB1_I: Mad3/BUB 36.3 2E+02 0.0043 25.1 7.8 45 84-134 81-125 (126)
370 KOG4563 Cell cycle-regulated h 36.2 57 0.0012 34.1 4.9 66 59-128 38-103 (400)
371 KOG0376 Serine-threonine phosp 35.5 37 0.00081 36.5 3.5 76 232-335 16-91 (476)
372 KOG1915 Cell cycle control pro 35.3 6.5E+02 0.014 27.8 16.3 99 221-351 175-273 (677)
373 cd02677 MIT_SNX15 MIT: domain 35.2 81 0.0018 25.3 4.7 31 108-138 6-36 (75)
374 PF10255 Paf67: RNA polymerase 34.7 63 0.0014 34.3 5.0 68 64-136 124-192 (404)
375 TIGR02710 CRISPR-associated pr 33.5 6E+02 0.013 26.8 13.2 58 226-298 136-195 (380)
376 PF14357 DUF4404: Domain of un 33.2 62 0.0013 26.6 3.8 23 100-122 62-84 (85)
377 KOG2114 Vacuolar assembly/sort 33.2 3.3E+02 0.0072 31.7 10.5 39 103-141 363-401 (933)
378 PF10366 Vps39_1: Vacuolar sor 32.6 71 0.0015 27.3 4.2 26 277-302 42-67 (108)
379 cd02679 MIT_spastin MIT: domai 31.9 75 0.0016 25.9 4.0 33 281-313 15-47 (79)
380 PF04053 Coatomer_WDAD: Coatom 31.7 6.7E+02 0.015 26.9 12.3 119 223-393 298-434 (443)
381 PRK13184 pknD serine/threonine 31.4 4.5E+02 0.0098 31.1 11.6 63 241-322 533-595 (932)
382 KOG0985 Vesicle coat protein c 31.0 8.5E+02 0.018 29.5 13.2 26 224-249 1283-1308(1666)
383 PF08969 USP8_dimer: USP8 dime 29.9 1.1E+02 0.0024 26.1 5.0 38 276-315 40-77 (115)
384 COG3947 Response regulator con 29.8 2.9E+02 0.0062 28.5 8.4 66 227-312 286-351 (361)
385 cd09034 BRO1_Alix_like Protein 29.7 5.9E+02 0.013 25.6 12.8 36 220-255 111-156 (345)
386 KOG2908 26S proteasome regulat 29.4 6.9E+02 0.015 26.2 12.1 100 229-352 84-184 (380)
387 KOG2581 26S proteasome regulat 29.2 7.5E+02 0.016 26.6 13.9 133 228-386 134-270 (493)
388 KOG1920 IkappaB kinase complex 28.6 1.9E+02 0.0041 34.8 7.8 70 227-304 959-1029(1265)
389 COG4976 Predicted methyltransf 28.5 62 0.0013 32.1 3.4 54 231-304 6-59 (287)
390 COG3629 DnrI DNA-binding trans 28.5 5.1E+02 0.011 26.1 10.1 75 221-315 154-228 (280)
391 COG3947 Response regulator con 28.2 3.2E+02 0.007 28.1 8.5 28 111-138 282-309 (361)
392 PF10366 Vps39_1: Vacuolar sor 27.9 63 0.0014 27.7 3.1 24 111-134 42-65 (108)
393 KOG0985 Vesicle coat protein c 27.8 1.2E+03 0.025 28.4 20.8 226 111-404 1107-1362(1666)
394 KOG1920 IkappaB kinase complex 27.7 4.2E+02 0.0091 32.0 10.4 101 55-165 907-1018(1265)
395 KOG2422 Uncharacterized conser 27.3 9.2E+02 0.02 27.1 12.3 158 233-414 251-423 (665)
396 PF09613 HrpB1_HrpK: Bacterial 27.0 3.6E+02 0.0078 24.9 8.1 64 59-134 7-70 (160)
397 PF08311 Mad3_BUB1_I: Mad3/BUB 26.7 99 0.0021 27.0 4.2 27 221-247 100-126 (126)
398 smart00671 SEL1 Sel1-like repe 25.9 1E+02 0.0022 19.6 3.3 31 64-94 3-33 (36)
399 KOG1550 Extracellular protein 25.9 9E+02 0.019 26.5 14.0 66 64-134 246-319 (552)
400 PF08238 Sel1: Sel1 repeat; I 25.0 1.4E+02 0.003 19.4 3.9 32 63-94 2-36 (39)
401 KOG2880 SMAD6 interacting prot 24.6 3.4E+02 0.0073 28.5 8.0 71 277-352 38-108 (424)
402 PF05053 Menin: Menin; InterP 24.4 5.5E+02 0.012 28.6 10.0 69 217-300 274-344 (618)
403 PF09613 HrpB1_HrpK: Bacterial 24.4 3.8E+02 0.0083 24.8 7.7 85 273-378 9-93 (160)
404 KOG4322 Anaphase-promoting com 24.0 9.4E+02 0.02 26.0 13.0 180 78-301 285-469 (482)
405 KOG3364 Membrane protein invol 23.8 4E+02 0.0087 24.3 7.5 60 273-336 31-91 (149)
406 KOG1811 Predicted Zn2+-binding 23.3 2.1E+02 0.0045 32.3 6.5 66 236-322 566-631 (1141)
407 PF08626 TRAPPC9-Trs120: Trans 23.0 1.4E+03 0.03 27.7 16.1 121 221-355 386-536 (1185)
408 PF04190 DUF410: Protein of un 22.8 7.3E+02 0.016 24.3 14.4 110 232-386 2-113 (260)
409 KOG2561 Adaptor protein NUB1, 22.4 7.6E+02 0.017 26.9 10.3 69 286-360 223-305 (568)
410 KOG2460 Signal recognition par 22.4 1.9E+02 0.0042 31.8 6.0 61 81-141 379-455 (593)
411 PRK10941 hypothetical protein; 22.1 4.5E+02 0.0098 26.2 8.4 77 221-322 182-258 (269)
412 COG4976 Predicted methyltransf 22.1 1.5E+02 0.0033 29.5 4.8 57 79-143 8-64 (287)
413 PF08626 TRAPPC9-Trs120: Trans 21.8 5.5E+02 0.012 31.1 10.4 87 233-335 358-464 (1185)
414 KOG2168 Cullins [Cell cycle co 21.7 8.9E+02 0.019 28.2 11.3 105 221-354 623-732 (835)
415 cd09239 BRO1_HD-PTP_like Prote 21.7 9.1E+02 0.02 25.0 12.1 36 220-255 114-158 (361)
416 PF15015 NYD-SP12_N: Spermatog 21.5 2.4E+02 0.0051 30.5 6.4 63 113-175 181-257 (569)
417 PF10255 Paf67: RNA polymerase 21.2 1.7E+02 0.0037 31.1 5.4 71 276-352 124-194 (404)
418 PF11846 DUF3366: Domain of un 20.5 1.1E+02 0.0025 28.1 3.6 31 275-305 145-175 (193)
419 smart00386 HAT HAT (Half-A-TPR 20.1 1.1E+02 0.0023 18.6 2.4 16 288-303 1-16 (33)
No 1
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=100.00 E-value=9.9e-33 Score=290.83 Aligned_cols=297 Identities=20% Similarity=0.239 Sum_probs=243.0
Q ss_pred CCCCChHHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013867 54 NGLNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQK 133 (435)
Q Consensus 54 ~g~~~~~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~r 133 (435)
+|.++|.+.-...++|..+. .+|+|++|++++++|+.+.++..|.+||.+++.++++|.+|.++++|++|+.+|++
T Consensus 191 ~~~~~P~~~~~~~~La~~y~----~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~ 266 (508)
T KOG1840|consen 191 LGDEDPERLRTLRNLAEMYA----VQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEE 266 (508)
T ss_pred cccCCchHHHHHHHHHHHHH----HhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 58889999999999999984 47999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhHHH---HHH-HHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCc
Q 013867 134 VENFKNSILGV---RVA-AMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLE 209 (435)
Q Consensus 134 al~i~e~~L~i---~va-ale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~ 209 (435)
|++|+++.+|. .|+ ++++|+-+|..+|. |.+|++...++.-|.. ..+|-.|
T Consensus 267 AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GK----------------------f~EA~~~~e~Al~I~~--~~~~~~~- 321 (508)
T KOG1840|consen 267 ALTIREEVFGEDHPAVAATLNNLAVLYYKQGK----------------------FAEAEEYCERALEIYE--KLLGASH- 321 (508)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhccCC----------------------hHHHHHHHHHHHHHHH--HhhccCh-
Confidence 99999988874 233 45555555544444 4455554444444433 3344443
Q ss_pred ccccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHH-HHHHHHHHHHHcC
Q 013867 210 SGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALA-ATFALGQLEAHMG 288 (435)
Q Consensus 210 ~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~-~l~nLa~ly~~qG 288 (435)
+.+.....+++.++..+++|++|+.+|++++.|+.+ .+| ++|+.++ ..+|||.+|..||
T Consensus 322 -------~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~--------~~g-----~~~~~~a~~~~nl~~l~~~~g 381 (508)
T KOG1840|consen 322 -------PEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLD--------APG-----EDNVNLAKIYANLAELYLKMG 381 (508)
T ss_pred -------HHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh--------hcc-----ccchHHHHHHHHHHHHHHHhc
Confidence 456677788899999999999999999999999763 344 3344455 5689999999999
Q ss_pred CHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhcc
Q 013867 289 NFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDR 368 (435)
Q Consensus 289 ~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~n 368 (435)
||+||+++|++|++|.++.+|..|+.|+..+++||..|.+.+++++| +.||.+++.|++..|++||++-..+.|
T Consensus 382 k~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a------~~l~~~~~~i~~~~g~~~~~~~~~~~n 455 (508)
T KOG1840|consen 382 KYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEA------EQLFEEAKDIMKLCGPDHPDVTYTYLN 455 (508)
T ss_pred chhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchH------HHHHHHHHHHHHHhCCCCCchHHHHHH
Confidence 99999999999999999999999999999999999999888886655 999999999998889999999999999
Q ss_pred HHHHHHHhcCHHHHhhHhhhhhhHHHHHHHHHHHHhcccchhHH
Q 013867 369 TDIVALARGGYAEALSVQQNRKDEGERMKRWAEAAWRNRRVSLA 412 (435)
Q Consensus 369 la~~~~a~G~yaeal~~~~~r~~eae~~~~~a~~~~~~~r~~l~ 412 (435)
|+.+|.++|+|+.|..+. +++.+|.+.-..+...+..
T Consensus 456 L~~~Y~~~g~~e~a~~~~-------~~~~~~~~~~~~~~~~~~~ 492 (508)
T KOG1840|consen 456 LAALYRAQGNYEAAEELE-------EKVLNAREQRLGTASPTVE 492 (508)
T ss_pred HHHHHHHcccHHHHHHHH-------HHHHHHHHHcCCCCCcchh
Confidence 999999999999887765 3455555444444443333
No 2
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=100.00 E-value=7.5e-31 Score=276.64 Aligned_cols=259 Identities=19% Similarity=0.218 Sum_probs=209.9
Q ss_pred CCCCChHHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013867 54 NGLNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQK 133 (435)
Q Consensus 54 ~g~~~~~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~r 133 (435)
.|-+||.|+.-+.++|..| + ++++|++|+.+|+++|+|.++.+|++||.||.+++|||.+|..+|||+||++++++
T Consensus 233 ~G~~hl~va~~l~~~a~~y-~---~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~ 308 (508)
T KOG1840|consen 233 SGLKHLVVASMLNILALVY-R---SLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCER 308 (508)
T ss_pred cCccCHHHHHHHHHHHHHH-H---HhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHH
Confidence 3799999999999999999 4 57899999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCccccc
Q 013867 134 VENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQ 213 (435)
Q Consensus 134 al~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~ 213 (435)
|+.|.++.++.. |+... ........+..... .|+++.. ...+++++.....|.+|
T Consensus 309 Al~I~~~~~~~~--------------~~~v~--~~l~~~~~~~~~~~--~~Eea~~--l~q~al~i~~~~~g~~~----- 363 (508)
T KOG1840|consen 309 ALEIYEKLLGAS--------------HPEVA--AQLSELAAILQSMN--EYEEAKK--LLQKALKIYLDAPGEDN----- 363 (508)
T ss_pred HHHHHHHhhccC--------------hHHHH--HHHHHHHHHHHHhc--chhHHHH--HHHHHHHHHHhhccccc-----
Confidence 999998855431 22211 11122233333333 2554444 44566666555555543
Q ss_pred ccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHH
Q 013867 214 EEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDA 293 (435)
Q Consensus 214 ~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eA 293 (435)
++++..-.+||++|+.+|+|+||+++|++|+.|.++..+ ..++.+| ..+++||..|...++|.+|
T Consensus 364 ---~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~-~~~~~~~-----------~~l~~la~~~~~~k~~~~a 428 (508)
T KOG1840|consen 364 ---VNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLG-KKDYGVG-----------KPLNQLAEAYEELKKYEEA 428 (508)
T ss_pred ---hHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccc-CcChhhh-----------HHHHHHHHHHHHhcccchH
Confidence 567788889999999999999999999999999765443 1222222 4689999999999999999
Q ss_pred HHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhc-CCCCCCCchh
Q 013867 294 EEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLK-APPLESEGVE 363 (435)
Q Consensus 294 e~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k-~~~~~hp~~a 363 (435)
+.+|.++..|. +.+|++||+|-.++-|||-+|..||+||+| +.+-.+++.+++ ..|..+|.+.
T Consensus 429 ~~l~~~~~~i~-~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a------~~~~~~~~~~~~~~~~~~~~~~~ 492 (508)
T KOG1840|consen 429 EQLFEEAKDIM-KLCGPDHPDVTYTYLNLAALYRAQGNYEAA------EELEEKVLNAREQRLGTASPTVE 492 (508)
T ss_pred HHHHHHHHHHH-HHhCCCCCchHHHHHHHHHHHHHcccHHHH------HHHHHHHHHHHHHcCCCCCcchh
Confidence 99999999999 999999999999999999999999999887 899999999995 5677777633
No 3
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.89 E-value=1.7e-22 Score=211.50 Aligned_cols=258 Identities=17% Similarity=0.177 Sum_probs=201.9
Q ss_pred HHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 013867 60 PVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKN 139 (435)
Q Consensus 60 ~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e 139 (435)
-.|....|+|-++- .+|+..+|+..|++++++. |..+..|.|||++|.+.+.||+|+..|++|+.++.
T Consensus 216 ~fAiawsnLg~~f~----~~Gei~~aiq~y~eAvkld--------P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrp 283 (966)
T KOG4626|consen 216 CFAIAWSNLGCVFN----AQGEIWLAIQHYEEAVKLD--------PNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRP 283 (966)
T ss_pred ceeeeehhcchHHh----hcchHHHHHHHHHHhhcCC--------CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCC
Confidence 45566677777762 5789999999999998665 67888999999999999999999999999988776
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCccccc------
Q 013867 140 SILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQ------ 213 (435)
Q Consensus 140 ~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~------ 213 (435)
.+- .+-+|++-.|.++|.-+.|...+.+++.+- .++.+| -...+.|++.+ |+..+|..
T Consensus 284 n~A----~a~gNla~iYyeqG~ldlAI~~Ykral~~~-----P~F~~A--y~NlanALkd~-----G~V~ea~~cYnkaL 347 (966)
T KOG4626|consen 284 NHA----VAHGNLACIYYEQGLLDLAIDTYKRALELQ-----PNFPDA--YNNLANALKDK-----GSVTEAVDCYNKAL 347 (966)
T ss_pred cch----hhccceEEEEeccccHHHHHHHHHHHHhcC-----CCchHH--HhHHHHHHHhc-----cchHHHHHHHHHHH
Confidence 552 245788888999998888777777666552 123222 11222333221 22222110
Q ss_pred ccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHH
Q 013867 214 EEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDA 293 (435)
Q Consensus 214 ~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eA 293 (435)
...|.+.++++|+|.+|..||++++|..||++||++. |.++ ++.+|||.+|..||++++|
T Consensus 348 ~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~---------p~~a-----------aa~nNLa~i~kqqgnl~~A 407 (966)
T KOG4626|consen 348 RLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVF---------PEFA-----------AAHNNLASIYKQQGNLDDA 407 (966)
T ss_pred HhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC---------hhhh-----------hhhhhHHHHHHhcccHHHH
Confidence 0135677899999999999999999999999999992 1232 4568999999999999999
Q ss_pred HHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHH
Q 013867 294 EEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVA 373 (435)
Q Consensus 294 e~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~ 373 (435)
..+|+.||.| .|..|.+|+|+|.+|..+|+.+.| ...|.||+.|. |..+..-+|++.+|
T Consensus 408 i~~YkealrI--------~P~fAda~~NmGnt~ke~g~v~~A------~q~y~rAI~~n-------Pt~AeAhsNLasi~ 466 (966)
T KOG4626|consen 408 IMCYKEALRI--------KPTFADALSNMGNTYKEMGDVSAA------IQCYTRAIQIN-------PTFAEAHSNLASIY 466 (966)
T ss_pred HHHHHHHHhc--------CchHHHHHHhcchHHHHhhhHHHH------HHHHHHHHhcC-------cHHHHHHhhHHHHh
Confidence 9999999998 599999999999999999997765 89999999998 67788899999999
Q ss_pred HHhcCHHHHhhHh
Q 013867 374 LARGGYAEALSVQ 386 (435)
Q Consensus 374 ~a~G~yaeal~~~ 386 (435)
...|+-.+|+..+
T Consensus 467 kDsGni~~AI~sY 479 (966)
T KOG4626|consen 467 KDSGNIPEAIQSY 479 (966)
T ss_pred hccCCcHHHHHHH
Confidence 9999988886655
No 4
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.85 E-value=2.6e-20 Score=195.21 Aligned_cols=298 Identities=14% Similarity=0.136 Sum_probs=225.7
Q ss_pred cccccCCCCCccccccccCCCCcccCCCCChHHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHH
Q 013867 29 CLLSASTLPPPRRLVHDANGNGNRINGLNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRG 108 (435)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A 108 (435)
||.+....+++...|..+ + .--|+.+-...+++-.+. .+|+..||-..|.++++++ |-.|
T Consensus 159 al~~~~~~~~a~~~~~~a------l--qlnP~l~ca~s~lgnLlk----a~Grl~ea~~cYlkAi~~q--------p~fA 218 (966)
T KOG4626|consen 159 ALVTQGDLELAVQCFFEA------L--QLNPDLYCARSDLGNLLK----AEGRLEEAKACYLKAIETQ--------PCFA 218 (966)
T ss_pred HHHhcCCCcccHHHHHHH------H--hcCcchhhhhcchhHHHH----hhcccchhHHHHHHHHhhC--------Ccee
Confidence 556666666666665555 2 123455556667777762 5789999999999999776 5688
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhc----CCCc-
Q 013867 109 ISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKH----KPEN- 183 (435)
Q Consensus 109 ~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~----~~~~- 183 (435)
....|||.++-.||+.-.||.+|++|.++...-+. +.=||+.+|.+++.++.|..-+.+.+.+.-+. +...
T Consensus 219 iawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~d----AYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~ 294 (966)
T KOG4626|consen 219 IAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLD----AYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLAC 294 (966)
T ss_pred eeehhcchHHhhcchHHHHHHHHHHhhcCCCcchH----HHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEE
Confidence 89999999999999999999999999887765543 34478888889999988877666666553211 1000
Q ss_pred -hhch----hhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCC
Q 013867 184 -YKTY----GAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSD 258 (435)
Q Consensus 184 -~~ea----eal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~ 258 (435)
|-+. -++..+.++|. +. |....+.+|+|..+...|+.+||+.+|.+||...
T Consensus 295 iYyeqG~ldlAI~~Ykral~-----~~-----------P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-------- 350 (966)
T KOG4626|consen 295 IYYEQGLLDLAIDTYKRALE-----LQ-----------PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-------- 350 (966)
T ss_pred EEeccccHHHHHHHHHHHHh-----cC-----------CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC--------
Confidence 1111 23333333333 22 5566788999999999999999999999999881
Q ss_pred CCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhh
Q 013867 259 MNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSAL 338 (435)
Q Consensus 259 ~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~ 338 (435)
|. ...+++|||+.|..||++++|..+|++||++ -|+.+...||||.+|.+||++++|
T Consensus 351 ----------p~--hadam~NLgni~~E~~~~e~A~~ly~~al~v--------~p~~aaa~nNLa~i~kqqgnl~~A--- 407 (966)
T KOG4626|consen 351 ----------PN--HADAMNNLGNIYREQGKIEEATRLYLKALEV--------FPEFAAAHNNLASIYKQQGNLDDA--- 407 (966)
T ss_pred ----------Cc--cHHHHHHHHHHHHHhccchHHHHHHHHHHhh--------ChhhhhhhhhHHHHHHhcccHHHH---
Confidence 11 1258999999999999999999999999997 488999999999999999998776
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHHHhhHhhhhhhH----HHHHHHHHHHHhccc
Q 013867 339 LIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQQNRKDE----GERMKRWAEAAWRNR 407 (435)
Q Consensus 339 ~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~~~r~~e----ae~~~~~a~~~~~~~ 407 (435)
...|+.||.|- |..+..++|++..|.-+|+-.+|+..+.+.+-. ||.-.+.|+.+.-.+
T Consensus 408 ---i~~YkealrI~-------P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsG 470 (966)
T KOG4626|consen 408 ---IMCYKEALRIK-------PTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSG 470 (966)
T ss_pred ---HHHHHHHHhcC-------chHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccC
Confidence 89999999997 778999999999999999999999877554333 566666766655433
No 5
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.77 E-value=8.9e-17 Score=174.51 Aligned_cols=257 Identities=18% Similarity=0.171 Sum_probs=189.5
Q ss_pred ChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 013867 78 SDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYL 157 (435)
Q Consensus 78 s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~ 157 (435)
..+.|++|+.+|++++.+. ..+|..+..++++|.+|..+|+|++|+..|++++.+...... ++-.++..+.
T Consensus 306 ~~~~y~~A~~~~~~al~~~-----~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~----~~~~la~~~~ 376 (615)
T TIGR00990 306 ADESYEEAARAFEKALDLG-----KLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQ----SYIKRASMNL 376 (615)
T ss_pred hhhhHHHHHHHHHHHHhcC-----CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH----HHHHHHHHHH
Confidence 4678999999999999765 456889999999999999999999999999999887654322 3345566677
Q ss_pred hcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCccccccc------ccchhHHHHHHHHHHH
Q 013867 158 QLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEE------EGCTGSAALSYGEYLH 231 (435)
Q Consensus 158 ~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~------~~~~~~~a~~la~~~~ 231 (435)
.+|++..|....+.++.+ .+ .+.+.+..+.. +....|+++.|...+ .|....+..++|.++.
T Consensus 377 ~~g~~~eA~~~~~~al~~----~p---~~~~~~~~lg~-----~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~ 444 (615)
T TIGR00990 377 ELGDPDKAEEDFDKALKL----NS---EDPDIYYHRAQ-----LHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQY 444 (615)
T ss_pred HCCCHHHHHHHHHHHHHh----CC---CCHHHHHHHHH-----HHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHH
Confidence 788887777766665443 11 11122222221 122334444433211 3555567778899999
Q ss_pred HhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCC
Q 013867 232 ATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSH 311 (435)
Q Consensus 232 ~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~ 311 (435)
.+|+|++|+.+|++++.+. |.. ...++++|.+|..+|+|++|+..|++|+.+..+ ..+.
T Consensus 445 ~~g~~~eA~~~~~~al~~~---------P~~-----------~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~-~~~~ 503 (615)
T TIGR00990 445 KEGSIASSMATFRRCKKNF---------PEA-----------PDVYNYYGELLLDQNKFDEAIEKFDTAIELEKE-TKPM 503 (615)
T ss_pred HCCCHHHHHHHHHHHHHhC---------CCC-----------hHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCc-cccc
Confidence 9999999999999999871 110 135689999999999999999999999998765 3445
Q ss_pred ChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHHHhhHhhhh
Q 013867 312 HPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQQNR 389 (435)
Q Consensus 312 HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~~~r 389 (435)
|+.+...++....+|..+|++++| +.+|++|+++. |+....+.+++.++..+|+|++|+..++..
T Consensus 504 ~~~~~~l~~~a~~~~~~~~~~~eA------~~~~~kAl~l~-------p~~~~a~~~la~~~~~~g~~~eAi~~~e~A 568 (615)
T TIGR00990 504 YMNVLPLINKALALFQWKQDFIEA------ENLCEKALIID-------PECDIAVATMAQLLLQQGDVDEALKLFERA 568 (615)
T ss_pred cccHHHHHHHHHHHHHHhhhHHHH------HHHHHHHHhcC-------CCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 667777777777778878987766 89999999873 333446778999999999999999887543
No 6
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.74 E-value=2.2e-15 Score=163.73 Aligned_cols=288 Identities=13% Similarity=0.120 Sum_probs=182.4
Q ss_pred HHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhh
Q 013867 61 VVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNS 140 (435)
Q Consensus 61 vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~ 140 (435)
-|..+.+.|..+- ..|+|++|+..|++++.+.. + ...+.|+|.+|..+|+|++|++.+.+++++...
T Consensus 126 ~a~~~k~~G~~~~----~~~~~~~Ai~~y~~al~~~p-----~----~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~ 192 (615)
T TIGR00990 126 YAAKLKEKGNKAY----RNKDFNKAIKLYSKAIECKP-----D----PVYYSNRAACHNALGDWEKVVEDTTAALELDPD 192 (615)
T ss_pred HHHHHHHHHHHHH----HcCCHHHHHHHHHHHHhcCC-----c----hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC
Confidence 4666778888873 36899999999999997763 2 246999999999999999999999999887544
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHH-----------HH---------------hcCCCc-----------
Q 013867 141 ILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQL-----------CE---------------KHKPEN----------- 183 (435)
Q Consensus 141 ~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l-----------~~---------------~~~~~~----------- 183 (435)
. +.++..++..|..+|.++.|.........+ +. ...+..
T Consensus 193 ~----~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~ 268 (615)
T TIGR00990 193 Y----SKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYL 268 (615)
T ss_pred C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Confidence 3 335566677777888776664322111000 00 000000
Q ss_pred -----------hhc--------hh-------------hHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHH
Q 013867 184 -----------YKT--------YG-------------AVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLH 231 (435)
Q Consensus 184 -----------~~e--------ae-------------al~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~ 231 (435)
+.+ .. ....+..|+...-+.+... ..++....+...+|.++.
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~------~~~~~~a~a~~~lg~~~~ 342 (615)
T TIGR00990 269 QSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLG------KLGEKEAIALNLRGTFKC 342 (615)
T ss_pred HHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcC------CCChhhHHHHHHHHHHHH
Confidence 000 00 0001111221111111100 012334455666788888
Q ss_pred HhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCC
Q 013867 232 ATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSH 311 (435)
Q Consensus 232 ~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~ 311 (435)
.+|+|++|+..|++++++. |. ...++.++|.+|..+|+|++|+..|++++++ .|+
T Consensus 343 ~~g~~~eA~~~~~kal~l~---------P~-----------~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-----~p~ 397 (615)
T TIGR00990 343 LKGKHLEALADLSKSIELD---------PR-----------VTQSYIKRASMNLELGDPDKAEEDFDKALKL-----NSE 397 (615)
T ss_pred HcCCHHHHHHHHHHHHHcC---------CC-----------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCC
Confidence 8999999999999988771 11 1235678888888888888888888888876 344
Q ss_pred ChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHHHhhHhhhhhh
Q 013867 312 HPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQQNRKD 391 (435)
Q Consensus 312 HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~~~r~~ 391 (435)
+ ..++.++|.+|..+|++++| ...|++++++. |+......+++.++..+|+|++|+..+..-..
T Consensus 398 ~---~~~~~~lg~~~~~~g~~~~A------~~~~~kal~l~-------P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 461 (615)
T TIGR00990 398 D---PDIYYHRAQLHFIKGEFAQA------GKDYQKSIDLD-------PDFIFSHIQLGVTQYKEGSIASSMATFRRCKK 461 (615)
T ss_pred C---HHHHHHHHHHHHHcCCHHHH------HHHHHHHHHcC-------ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4 45678888888888887766 78888888764 33334556788888888888888777643222
Q ss_pred H----HHHHHHHHHHHhcccchhHH
Q 013867 392 E----GERMKRWAEAAWRNRRVSLA 412 (435)
Q Consensus 392 e----ae~~~~~a~~~~~~~r~~l~ 412 (435)
. .+.+...+..++..+++..|
T Consensus 462 ~~P~~~~~~~~lg~~~~~~g~~~~A 486 (615)
T TIGR00990 462 NFPEAPDVYNYYGELLLDQNKFDEA 486 (615)
T ss_pred hCCCChHHHHHHHHHHHHccCHHHH
Confidence 1 34555566666666665554
No 7
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.71 E-value=2.8e-15 Score=164.53 Aligned_cols=271 Identities=11% Similarity=0.042 Sum_probs=174.9
Q ss_pred CCCChHHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013867 55 GLNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKV 134 (435)
Q Consensus 55 g~~~~~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ra 134 (435)
-|+|++. +..++.+.- ..|++++|+..|++++.+. |.-...+..+|.+|..+|++++|++.|+++
T Consensus 72 ~p~~~~~---l~~l~~~~l----~~g~~~~A~~~l~~~l~~~--------P~~~~a~~~la~~l~~~g~~~~Ai~~l~~A 136 (656)
T PRK15174 72 AKNGRDL---LRRWVISPL----ASSQPDAVLQVVNKLLAVN--------VCQPEDVLLVASVLLKSKQYATVADLAEQA 136 (656)
T ss_pred CCCchhH---HHHHhhhHh----hcCCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4555554 445554442 3689999999999999665 334556889999999999999999999999
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHH-------------HHhcCCCchhchhhHHHHHHHHH---
Q 013867 135 ENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQL-------------CEKHKPENYKTYGAVNSRANAVK--- 198 (435)
Q Consensus 135 l~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l-------------~~~~~~~~~~eaeal~~~a~Ai~--- 198 (435)
+.+..... .++..++.++..+|..+.|...+...... +...+ .+++|...+.......
T Consensus 137 l~l~P~~~----~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~~g--~~~eA~~~~~~~l~~~~~~ 210 (656)
T PRK15174 137 WLAFSGNS----QIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLSFLNKS--RLPEDHDLARALLPFFALE 210 (656)
T ss_pred HHhCCCcH----HHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCc
Confidence 87755432 23445556667777766665544432211 11111 2444433322211100
Q ss_pred --------HHHHHhcCCCccccccc------ccchhHHHHHHHHHHHHhhchHH----HHHHHHHHHHHHHHhcccCCCC
Q 013867 199 --------GLVELAHGNLESGLQEE------EGCTGSAALSYGEYLHATRNFLL----AKKFYQKVIEVLAEQKDFSDMN 260 (435)
Q Consensus 199 --------~~~~~lgg~h~~a~~~~------~~~~~~~a~~la~~~~~~G~y~e----Ae~ly~rAL~I~~~~~~~~~~~ 260 (435)
.....-.|++++|...+ +|....+..++|.+|..+|+|++ |+.+|++++++.
T Consensus 211 ~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~---------- 280 (656)
T PRK15174 211 RQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN---------- 280 (656)
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC----------
Confidence 00111123333322111 35556667778888888888885 788888888771
Q ss_pred CcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHH
Q 013867 261 TLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLI 340 (435)
Q Consensus 261 ~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~ 340 (435)
|+ ...++++||.+|..+|+|++|+..|++++.+ +|+......+||.+|..+|++++|
T Consensus 281 --------P~--~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--------~P~~~~a~~~La~~l~~~G~~~eA----- 337 (656)
T PRK15174 281 --------SD--NVRIVTLYADALIRTGQNEKAIPLLQQSLAT--------HPDLPYVRAMYARALRQVGQYTAA----- 337 (656)
T ss_pred --------CC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHH-----
Confidence 11 1246778899999999999999999998875 455556677889999999987766
Q ss_pred HHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHHHhhHhh
Q 013867 341 QEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQQ 387 (435)
Q Consensus 341 Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~~ 387 (435)
+..|+++++.. |+......+++.++...|++++|+..+.
T Consensus 338 -~~~l~~al~~~-------P~~~~~~~~~a~al~~~G~~deA~~~l~ 376 (656)
T PRK15174 338 -SDEFVQLAREK-------GVTSKWNRYAAAALLQAGKTSEAESVFE 376 (656)
T ss_pred -HHHHHHHHHhC-------ccchHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 77788887752 3323334446777888899998887663
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.68 E-value=2.5e-14 Score=155.76 Aligned_cols=153 Identities=18% Similarity=0.120 Sum_probs=120.2
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013867 221 SAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRT 300 (435)
Q Consensus 221 ~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rA 300 (435)
.+..+++.++..+|++++|+..+++++... |+ ...+++++|.+|..+|++++|+.+|+++
T Consensus 737 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~------------------~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~ 796 (899)
T TIGR02917 737 QNAIKLHRALLASGNTAEAVKTLEAWLKTH------------------PN--DAVLRTALAELYLAQKDYDKAIKHYRTV 796 (899)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------------------CC--CHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 455667888888888888888888888651 11 1245688999999999999999999999
Q ss_pred HHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHH
Q 013867 301 LTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYA 380 (435)
Q Consensus 301 L~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~ya 380 (435)
+++ +|+-..+++++|.+|..+|+ ++| ..+|++++++. +++|. .+++++.++..+|+++
T Consensus 797 ~~~--------~p~~~~~~~~l~~~~~~~~~-~~A------~~~~~~~~~~~----~~~~~---~~~~~~~~~~~~g~~~ 854 (899)
T TIGR02917 797 VKK--------APDNAVVLNNLAWLYLELKD-PRA------LEYAEKALKLA----PNIPA---ILDTLGWLLVEKGEAD 854 (899)
T ss_pred HHh--------CCCCHHHHHHHHHHHHhcCc-HHH------HHHHHHHHhhC----CCCcH---HHHHHHHHHHHcCCHH
Confidence 975 45667789999999999998 655 89999999874 34443 5668899999999999
Q ss_pred HHhhHhhhhhhH----HHHHHHHHHHHhcccchhHHHHh
Q 013867 381 EALSVQQNRKDE----GERMKRWAEAAWRNRRVSLAEAL 415 (435)
Q Consensus 381 eal~~~~~r~~e----ae~~~~~a~~~~~~~r~~l~~~l 415 (435)
+|+..+.+-.+. .+.+...+..+|+.++...|..+
T Consensus 855 ~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 893 (899)
T TIGR02917 855 RALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKE 893 (899)
T ss_pred HHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHH
Confidence 999987544433 46666789999999998777654
No 9
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.67 E-value=3e-14 Score=144.33 Aligned_cols=246 Identities=17% Similarity=0.156 Sum_probs=170.5
Q ss_pred ChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 013867 78 SDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYL 157 (435)
Q Consensus 78 s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~ 157 (435)
..|+|++|+..|+++++.. |....++..+|.+|..+|+|++|++.+++++.............+..++..|.
T Consensus 47 ~~~~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~ 118 (389)
T PRK11788 47 LNEQPDKAIDLFIEMLKVD--------PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYL 118 (389)
T ss_pred hcCChHHHHHHHHHHHhcC--------cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 4579999999999999653 56678899999999999999999999998875322111112335667778888
Q ss_pred hcCCCcchHHHHHHHHHH--------------HHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHH
Q 013867 158 QLGQDDTSSVVADKCLQL--------------CEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAA 223 (435)
Q Consensus 158 ~~g~~~~A~~~~~~~~~l--------------~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a 223 (435)
.+|.++.|..+.+..... +...+ ++++|... ..+.+. .+...+ ........
T Consensus 119 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g--~~~~A~~~--~~~~~~-----~~~~~~------~~~~~~~~ 183 (389)
T PRK11788 119 KAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEK--DWQKAIDV--AERLEK-----LGGDSL------RVEIAHFY 183 (389)
T ss_pred HCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhc--hHHHHHHH--HHHHHH-----hcCCcc------hHHHHHHH
Confidence 888887777665554321 11111 12211111 111111 111100 01122334
Q ss_pred HHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 013867 224 LSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTK 303 (435)
Q Consensus 224 ~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I 303 (435)
.+++.++..+|++++|+.+|++++++. . . ...+...||.+|..+|++++|..+|++++.+
T Consensus 184 ~~la~~~~~~~~~~~A~~~~~~al~~~---p------~-----------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 243 (389)
T PRK11788 184 CELAQQALARGDLDAARALLKKALAAD---P------Q-----------CVRASILLGDLALAQGDYAAAIEALERVEEQ 243 (389)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhHC---c------C-----------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 567888999999999999999999871 1 1 1134678999999999999999999999875
Q ss_pred HHHhhCCCChh-HHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHHH
Q 013867 304 TEELFGSHHPK-VGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEA 382 (435)
Q Consensus 304 ~e~~lG~~HP~-va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yaea 382 (435)
+|+ +..+++.|+.+|..+|++++| ..++++++++. |+. . ...+++.++..+|++++|
T Consensus 244 --------~p~~~~~~~~~l~~~~~~~g~~~~A------~~~l~~~~~~~----p~~---~-~~~~la~~~~~~g~~~~A 301 (389)
T PRK11788 244 --------DPEYLSEVLPKLMECYQALGDEAEG------LEFLRRALEEY----PGA---D-LLLALAQLLEEQEGPEAA 301 (389)
T ss_pred --------ChhhHHHHHHHHHHHHHHcCCHHHH------HHHHHHHHHhC----CCc---h-HHHHHHHHHHHhCCHHHH
Confidence 233 457789999999999998876 78899988863 222 2 236788999999999999
Q ss_pred hhHhhh
Q 013867 383 LSVQQN 388 (435)
Q Consensus 383 l~~~~~ 388 (435)
+.....
T Consensus 302 ~~~l~~ 307 (389)
T PRK11788 302 QALLRE 307 (389)
T ss_pred HHHHHH
Confidence 887643
No 10
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.62 E-value=1.4e-13 Score=151.20 Aligned_cols=295 Identities=14% Similarity=0.014 Sum_probs=185.3
Q ss_pred HHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhh
Q 013867 62 VLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSI 141 (435)
Q Consensus 62 A~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~ 141 (435)
+.-++..+..+- ..|++++|+.++++.+... |.-...+.+|+..+..+|++++|++.|++++.+....
T Consensus 42 ~~~~~~~~~~~~----~~g~~~~A~~l~~~~l~~~--------p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~ 109 (656)
T PRK15174 42 EQNIILFAIACL----RKDETDVGLTLLSDRVLTA--------KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQ 109 (656)
T ss_pred ccCHHHHHHHHH----hcCCcchhHHHhHHHHHhC--------CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCC
Confidence 344666666663 3689999999999999444 4446668889999999999999999999998776544
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHH--------------HHhcCCCchhchhhHHHHHHHH---------H
Q 013867 142 LGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQL--------------CEKHKPENYKTYGAVNSRANAV---------K 198 (435)
Q Consensus 142 L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l--------------~~~~~~~~~~eaeal~~~a~Ai---------~ 198 (435)
.. ++-.++..+..+|+...|...+++.+.+ +...+ .+++|...+...... .
T Consensus 110 ~~----a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g--~~~eA~~~~~~~~~~~P~~~~a~~~ 183 (656)
T PRK15174 110 PE----DVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMD--KELQAISLARTQAQEVPPRGDMIAT 183 (656)
T ss_pred hH----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCC--ChHHHHHHHHHHHHhCCCCHHHHHH
Confidence 22 3345556667777777776666554443 22222 233332222211100 0
Q ss_pred HHHHHhcCCCccccccc-------ccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchH
Q 013867 199 GLVELAHGNLESGLQEE-------EGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEE 271 (435)
Q Consensus 199 ~~~~~lgg~h~~a~~~~-------~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~ 271 (435)
.......|+++.|.... .+........++.++..+|+|++|+..|++++++. |+
T Consensus 184 ~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~------------------p~- 244 (656)
T PRK15174 184 CLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG------------------LD- 244 (656)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC------------------CC-
Confidence 00111234433332111 01111122334556777888888888888888660 11
Q ss_pred HHHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHH
Q 013867 272 VALAATFALGQLEAHMGNFGD----AEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRR 347 (435)
Q Consensus 272 ~~l~~l~nLa~ly~~qG~y~e----Ae~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~r 347 (435)
....+++||.+|..+|+|++ |+.+|++++++ +|+.+.++.++|.+|..+|++++| +..|++
T Consensus 245 -~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~l~~~g~~~eA------~~~l~~ 309 (656)
T PRK15174 245 -GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF--------NSDNVRIVTLYADALIRTGQNEKA------IPLLQQ 309 (656)
T ss_pred -CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHCCCHHHH------HHHHHH
Confidence 12456789999999999986 67777777765 366678888999999999997766 788999
Q ss_pred HHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHHHhhHhhhhhhH----HHHHHHHHHHHhcccchhHHHHh
Q 013867 348 ALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQQNRKDE----GERMKRWAEAAWRNRRVSLAEAL 415 (435)
Q Consensus 348 AL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~~~r~~e----ae~~~~~a~~~~~~~r~~l~~~l 415 (435)
++++. |+++ ....+++.++..+|+|++|+..+.+-... .......+..++..++...|...
T Consensus 310 al~l~----P~~~---~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~ 374 (656)
T PRK15174 310 SLATH----PDLP---YVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESV 374 (656)
T ss_pred HHHhC----CCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHH
Confidence 88762 3333 35567889999999999998776332211 12222345566666666555443
No 11
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.62 E-value=2.3e-13 Score=148.16 Aligned_cols=261 Identities=21% Similarity=0.211 Sum_probs=138.7
Q ss_pred HHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHH
Q 013867 64 QMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILG 143 (435)
Q Consensus 64 ~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~ 143 (435)
....+|..+. ..|+|++|+.+|++++++. |.....+.+++.+|..+|++++|++.|++++......
T Consensus 467 ~~~~l~~~~~----~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-- 532 (899)
T TIGR02917 467 LHNLLGAIYL----GKGDLAKAREAFEKALSIE--------PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKN-- 532 (899)
T ss_pred HHHHHHHHHH----hCCCHHHHHHHHHHHHhhC--------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCc--
Confidence 3445555553 3567888888888887543 3344567778888888888888888888776554332
Q ss_pred HHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCccccccc------cc
Q 013867 144 VRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEE------EG 217 (435)
Q Consensus 144 i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~------~~ 217 (435)
+.++..++..+...|....|..+........ +. +.+.....+. .....|+.+.+.... .|
T Consensus 533 --~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~---~~~~~~~l~~-----~~~~~~~~~~A~~~~~~~~~~~~ 598 (899)
T TIGR02917 533 --LRAILALAGLYLRTGNEEEAVAWLEKAAELN----PQ---EIEPALALAQ-----YYLGKGQLKKALAILNEAADAAP 598 (899)
T ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----cc---chhHHHHHHH-----HHHHCCCHHHHHHHHHHHHHcCC
Confidence 2234445555556666655554444332210 00 0000000000 000111111111000 12
Q ss_pred chhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 013867 218 CTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEIL 297 (435)
Q Consensus 218 ~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~ 297 (435)
....+...++.+|..+|+|++|+..|++++++. . . ....+..+|.+|..+|++++|...|
T Consensus 599 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~------~-----------~~~~~~~l~~~~~~~~~~~~A~~~~ 658 (899)
T TIGR02917 599 DSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ---P------D-----------SALALLLLADAYAVMKNYAKAITSL 658 (899)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---C------C-----------ChHHHHHHHHHHHHcCCHHHHHHHH
Confidence 223445556666666677777777777666550 0 0 0123445666666666666666666
Q ss_pred HHHHHHHHH--------------------------hhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHH
Q 013867 298 TRTLTKTEE--------------------------LFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEF 351 (435)
Q Consensus 298 ~rAL~I~e~--------------------------~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I 351 (435)
++++.+... .+...+|.....+..+|.+|..+|++++| ...|++++.+
T Consensus 659 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A------~~~~~~~~~~ 732 (899)
T TIGR02917 659 KRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAA------IQAYRKALKR 732 (899)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHH------HHHHHHHHhh
Confidence 666554211 11233555666677788888888887665 7777777765
Q ss_pred hcCCCCCCCchhhhhccHHHHHHHhcCHHHHhhHh
Q 013867 352 LKAPPLESEGVETKVDRTDIVALARGGYAEALSVQ 386 (435)
Q Consensus 352 ~k~~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~ 386 (435)
.. +. ..+.+++.++...|++.+|+...
T Consensus 733 ~~----~~----~~~~~l~~~~~~~g~~~~A~~~~ 759 (899)
T TIGR02917 733 AP----SS----QNAIKLHRALLASGNTAEAVKTL 759 (899)
T ss_pred CC----Cc----hHHHHHHHHHHHCCCHHHHHHHH
Confidence 31 11 23345566666666666665443
No 12
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.62 E-value=2.3e-13 Score=157.93 Aligned_cols=139 Identities=14% Similarity=0.070 Sum_probs=86.5
Q ss_pred cchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCc-----------c--------------cc-cccch
Q 013867 217 GCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTL-----------G--------------SC-NMALE 270 (435)
Q Consensus 217 ~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l-----------~--------------~~-~~~~~ 270 (435)
|....+...+|.+|..+|++++|+..|++++++. - +.+.. + .. +....
T Consensus 492 P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~---P---~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~ 565 (1157)
T PRK11447 492 PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK---P---NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQ 565 (1157)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---C---CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHH
Confidence 5556777889999999999999999999998761 1 01000 0 00 00000
Q ss_pred H----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHH
Q 013867 271 E----VALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYR 346 (435)
Q Consensus 271 ~----~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~ 346 (435)
. +....+.+++..|..+|++++|+.+++ .||.....+.+||.+|..+|++++| +..|+
T Consensus 566 ~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~------------~~p~~~~~~~~La~~~~~~g~~~~A------~~~y~ 627 (1157)
T PRK11447 566 ELAQRLQSDQVLETANRLRDSGKEAEAEALLR------------QQPPSTRIDLTLADWAQQRGDYAAA------RAAYQ 627 (1157)
T ss_pred HHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHH------------hCCCCchHHHHHHHHHHHcCCHHHH------HHHHH
Confidence 0 000011244555666666666665544 3555556778899999999997776 78888
Q ss_pred HHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHHHhhHh
Q 013867 347 RALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQ 386 (435)
Q Consensus 347 rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~ 386 (435)
+++++. |++++ .+.+++.++..+|+|++|+...
T Consensus 628 ~al~~~----P~~~~---a~~~la~~~~~~g~~~eA~~~l 660 (1157)
T PRK11447 628 RVLTRE----PGNAD---ARLGLIEVDIAQGDLAAARAQL 660 (1157)
T ss_pred HHHHhC----CCCHH---HHHHHHHHHHHCCCHHHHHHHH
Confidence 888763 33332 4556777777777777776654
No 13
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.61 E-value=2.5e-13 Score=124.15 Aligned_cols=203 Identities=17% Similarity=0.174 Sum_probs=133.2
Q ss_pred CCCChHHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013867 55 GLNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKV 134 (435)
Q Consensus 55 g~~~~~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ra 134 (435)
.++.+..+....++|..+.. .|+|++|+..+++++.. +|.....+..+|.+|..+|++++|++.|+++
T Consensus 24 ~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 91 (234)
T TIGR02521 24 TTDRNKAAKIRVQLALGYLE----QGDLEVAKENLDKALEH--------DPDDYLAYLALALYYQQLGELEKAEDSFRRA 91 (234)
T ss_pred cccCCcHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55667788888999998853 67999999999999865 3556788889999999999999999999887
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccc
Q 013867 135 ENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQE 214 (435)
Q Consensus 135 l~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~ 214 (435)
+.+ ++..
T Consensus 92 l~~----------------------~~~~--------------------------------------------------- 98 (234)
T TIGR02521 92 LTL----------------------NPNN--------------------------------------------------- 98 (234)
T ss_pred Hhh----------------------CCCC---------------------------------------------------
Confidence 332 1110
Q ss_pred cccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHH
Q 013867 215 EEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAE 294 (435)
Q Consensus 215 ~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe 294 (435)
..+..+++.++..+|+|++|+.+|++++... ..+. ....+.++|.+|..+|++++|+
T Consensus 99 -----~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~-----------~~~~~~~l~~~~~~~g~~~~A~ 155 (234)
T TIGR02521 99 -----GDVLNNYGTFLCQQGKYEQAMQQFEQAIEDP-------LYPQ-----------PARSLENAGLCALKAGDFDKAE 155 (234)
T ss_pred -----HHHHHHHHHHHHHcccHHHHHHHHHHHHhcc-------cccc-----------chHHHHHHHHHHHHcCCHHHHH
Confidence 0112234455666777777777777777541 0000 1123556777777777777777
Q ss_pred HHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHH
Q 013867 295 EILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVAL 374 (435)
Q Consensus 295 ~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~ 374 (435)
.+|.+++.+ .+++ ...+..+|.+|..+|++++| ...+++++++. ++.+. .+..++.++.
T Consensus 156 ~~~~~~~~~-----~~~~---~~~~~~la~~~~~~~~~~~A------~~~~~~~~~~~----~~~~~---~~~~~~~~~~ 214 (234)
T TIGR02521 156 KYLTRALQI-----DPQR---PESLLELAELYYLRGQYKDA------RAYLERYQQTY----NQTAE---SLWLGIRIAR 214 (234)
T ss_pred HHHHHHHHh-----CcCC---hHHHHHHHHHHHHcCCHHHH------HHHHHHHHHhC----CCCHH---HHHHHHHHHH
Confidence 777777765 2333 34566777777777776655 66777777661 22222 2224555666
Q ss_pred HhcCHHHHhhHh
Q 013867 375 ARGGYAEALSVQ 386 (435)
Q Consensus 375 a~G~yaeal~~~ 386 (435)
..|++++|....
T Consensus 215 ~~~~~~~a~~~~ 226 (234)
T TIGR02521 215 ALGDVAAAQRYG 226 (234)
T ss_pred HHhhHHHHHHHH
Confidence 666666665543
No 14
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.60 E-value=5.1e-13 Score=135.33 Aligned_cols=240 Identities=18% Similarity=0.134 Sum_probs=158.6
Q ss_pred HHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 013867 60 PVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKN 139 (435)
Q Consensus 60 ~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e 139 (435)
+.......+|..+. ..|+|++|+.++++++..-. .........+.+||.+|..+|+|++|+..|+++++...
T Consensus 67 ~~~~~~~~la~~~~----~~g~~~~A~~~~~~~l~~~~----~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~ 138 (389)
T PRK11788 67 ETVELHLALGNLFR----RRGEVDRAIRIHQNLLSRPD----LTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGD 138 (389)
T ss_pred ccHHHHHHHHHHHH----HcCcHHHHHHHHHHHhcCCC----CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCc
Confidence 33445566676663 36899999999999886311 11223557899999999999999999999999876432
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCccccccc----
Q 013867 140 SILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEE---- 215 (435)
Q Consensus 140 ~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~---- 215 (435)
. ...++..++.++..+|.+..|......+.... +.........+....+ .+..-.|++++|...+
T Consensus 139 ~----~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~~~~~la---~~~~~~~~~~~A~~~~~~al 207 (389)
T PRK11788 139 F----AEGALQQLLEIYQQEKDWQKAIDVAERLEKLG----GDSLRVEIAHFYCELA---QQALARGDLDAARALLKKAL 207 (389)
T ss_pred c----hHHHHHHHHHHHHHhchHHHHHHHHHHHHHhc----CCcchHHHHHHHHHHH---HHHHhCCCHHHHHHHHHHHH
Confidence 2 23345667777888888877766655543321 1000000000000000 0011123322222111
Q ss_pred --ccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHH
Q 013867 216 --EGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDA 293 (435)
Q Consensus 216 --~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eA 293 (435)
.|....+...++.+|..+|++++|..+|++++++- |+. ....++.|+.+|..+|++++|
T Consensus 208 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~------------------p~~-~~~~~~~l~~~~~~~g~~~~A 268 (389)
T PRK11788 208 AADPQCVRASILLGDLALAQGDYAAAIEALERVEEQD------------------PEY-LSEVLPKLMECYQALGDEAEG 268 (389)
T ss_pred hHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC------------------hhh-HHHHHHHHHHHHHHcCCHHHH
Confidence 23344566778899999999999999999999761 110 123567899999999999999
Q ss_pred HHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 294 EEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 294 e~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
..++++++.+ +|+... ++.+|.+|..+|++++| ..+|++++++.
T Consensus 269 ~~~l~~~~~~--------~p~~~~-~~~la~~~~~~g~~~~A------~~~l~~~l~~~ 312 (389)
T PRK11788 269 LEFLRRALEE--------YPGADL-LLALAQLLEEQEGPEAA------QALLREQLRRH 312 (389)
T ss_pred HHHHHHHHHh--------CCCchH-HHHHHHHHHHhCCHHHH------HHHHHHHHHhC
Confidence 9999999886 344333 38999999999998776 89999998873
No 15
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.58 E-value=2.4e-13 Score=157.79 Aligned_cols=284 Identities=13% Similarity=0.100 Sum_probs=182.8
Q ss_pred HHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCC----------Ccch------------------------H
Q 013867 62 VLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQL----------AESW------------------------R 107 (435)
Q Consensus 62 A~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~----------~Hp~------------------------~ 107 (435)
+..+.++|..+. .+|+|++|+.+|++++.+....... ..+. .
T Consensus 385 ~~a~~~Lg~~~~----~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~ 460 (1157)
T PRK11447 385 SYAVLGLGDVAM----ARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQ 460 (1157)
T ss_pred HHHHHHHHHHHH----HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhh
Confidence 345666777773 3689999999999999876431100 0000 0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHh---------
Q 013867 108 GISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEK--------- 178 (435)
Q Consensus 108 A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~--------- 178 (435)
...+..+|.+|..+|++++|++.|++++.+...... ..-.++.+|..+|....|...++.++.+.-.
T Consensus 461 ~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~----~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~a 536 (1157)
T PRK11447 461 NDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVW----LTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYG 536 (1157)
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 122445778888999999999999999887665432 2345666677777777776665554432100
Q ss_pred ---cCCCchhchhhHHHHH------HHHHH--------------HHHHhcCCCccccccc--ccchhHHHHHHHHHHHHh
Q 013867 179 ---HKPENYKTYGAVNSRA------NAVKG--------------LVELAHGNLESGLQEE--EGCTGSAALSYGEYLHAT 233 (435)
Q Consensus 179 ---~~~~~~~eaeal~~~a------~Ai~~--------------~~~~lgg~h~~a~~~~--~~~~~~~a~~la~~~~~~ 233 (435)
.....++++....... ..+.. ....-.|+.++|.... +|....+...+|.+|..+
T Consensus 537 l~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~ 616 (1157)
T PRK11447 537 LYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQR 616 (1157)
T ss_pred HHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHc
Confidence 0000122221111000 00000 0001123333322111 344456677889999999
Q ss_pred hchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCh
Q 013867 234 RNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHP 313 (435)
Q Consensus 234 G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP 313 (435)
|++++|+.+|++++++. |+ ...++.+||.+|..+|++++|+..|++++++ .|
T Consensus 617 g~~~~A~~~y~~al~~~------------------P~--~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~--------~p 668 (1157)
T PRK11447 617 GDYAAARAAYQRVLTRE------------------PG--NADARLGLIEVDIAQGDLAAARAQLAKLPAT--------AN 668 (1157)
T ss_pred CCHHHHHHHHHHHHHhC------------------CC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--------CC
Confidence 99999999999999881 11 1246789999999999999999999988764 45
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHHHhhHhhh
Q 013867 314 KVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQQN 388 (435)
Q Consensus 314 ~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~~~ 388 (435)
+....+.++|.+|..+|++++| ..+|++++...+...+ ....+..+..++.++..+|++++|+..+..
T Consensus 669 ~~~~~~~~la~~~~~~g~~~eA------~~~~~~al~~~~~~~~-~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~ 736 (1157)
T PRK11447 669 DSLNTQRRVALAWAALGDTAAA------QRTFNRLIPQAKSQPP-SMESALVLRDAARFEAQTGQPQQALETYKD 736 (1157)
T ss_pred CChHHHHHHHHHHHhCCCHHHH------HHHHHHHhhhCccCCc-chhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5666788999999999998776 8999999887632111 112344555678899999999999887643
No 16
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=99.56 E-value=1.6e-14 Score=114.89 Aligned_cols=74 Identities=22% Similarity=0.364 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 273 ALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 273 ~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
++.+++|||.+|..+|+|++|+++|++|+.| .+.+|++||.++.+++|||.+|..+|++++| +.+|++|++|+
T Consensus 4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A------~~~~~~al~i~ 76 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEA------LEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHH------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHH------HHHHHHHHhhh
Confidence 3457899999999999999999999999999 9999999999999999999999999998877 89999999998
Q ss_pred c
Q 013867 353 K 353 (435)
Q Consensus 353 k 353 (435)
+
T Consensus 77 ~ 77 (78)
T PF13424_consen 77 E 77 (78)
T ss_dssp H
T ss_pred c
Confidence 6
No 17
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.56 E-value=5.4e-13 Score=151.91 Aligned_cols=258 Identities=15% Similarity=0.075 Sum_probs=150.7
Q ss_pred CCChH--HHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013867 56 LNSNP--VVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQK 133 (435)
Q Consensus 56 ~~~~~--vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~r 133 (435)
|..|+ .+....++|.++. +|++++|+..|.+++.... ++ .....+|.++...|+|++|+..|++
T Consensus 469 ~~~p~~~~~~a~~~LG~~l~-----~~~~~eAi~a~~~Al~~~P-----d~----~~~L~lA~al~~~Gr~eeAi~~~rk 534 (987)
T PRK09782 469 GDMSPSYDAAAWNRLAKCYR-----DTLPGVALYAWLQAEQRQP-----DA----WQHRAVAYQAYQVEDYATALAAWQK 534 (987)
T ss_pred ccCCCCCCHHHHHHHHHHHH-----hCCcHHHHHHHHHHHHhCC-----ch----HHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 44455 6778889998883 3689999999999986652 21 2366778888999999999999999
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCccccc
Q 013867 134 VENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQ 213 (435)
Q Consensus 134 al~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~ 213 (435)
+....... ..+..++..+...|....|...++..+.+ .+..+ .+. .. +... ....|+++.|..
T Consensus 535 a~~~~p~~-----~a~~~la~all~~Gd~~eA~~~l~qAL~l----~P~~~----~l~-~~--La~~-l~~~Gr~~eAl~ 597 (987)
T PRK09782 535 ISLHDMSN-----EDLLAAANTAQAAGNGAARDRWLQQAEQR----GLGDN----ALY-WW--LHAQ-RYIPGQPELALN 597 (987)
T ss_pred HhccCCCc-----HHHHHHHHHHHHCCCHHHHHHHHHHHHhc----CCccH----HHH-HH--HHHH-HHhCCCHHHHHH
Confidence 75432111 11223344455666655555544433322 01000 000 00 0000 001122222211
Q ss_pred cc------ccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHc
Q 013867 214 EE------EGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHM 287 (435)
Q Consensus 214 ~~------~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~q 287 (435)
.+ .|. ..+..++|.++..+|++++|+..|++++++ . |++ ....+|||.++..+
T Consensus 598 ~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l-----------~-------Pd~--~~a~~nLG~aL~~~ 656 (987)
T PRK09782 598 DLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALEL-----------E-------PNN--SNYQAALGYALWDS 656 (987)
T ss_pred HHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----------C-------CCC--HHHHHHHHHHHHHC
Confidence 11 132 456667777777778888888888877777 1 111 13567777777778
Q ss_pred CCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhc
Q 013867 288 GNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVD 367 (435)
Q Consensus 288 G~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~ 367 (435)
|++++|+.+|++|+++ +|+-+..+.|||.+|..+|++++| +..|++|+++. |+.+....
T Consensus 657 G~~eeAi~~l~~AL~l--------~P~~~~a~~nLA~al~~lGd~~eA------~~~l~~Al~l~-------P~~a~i~~ 715 (987)
T PRK09782 657 GDIAQSREMLERAHKG--------LPDDPALIRQLAYVNQRLDDMAAT------QHYARLVIDDI-------DNQALITP 715 (987)
T ss_pred CCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHH------HHHHHHHHhcC-------CCCchhhh
Confidence 8888888888777775 455556677788888888776655 67777777665 23222333
Q ss_pred cHHHHHHHhcCHHHHhhHh
Q 013867 368 RTDIVALARGGYAEALSVQ 386 (435)
Q Consensus 368 nla~~~~a~G~yaeal~~~ 386 (435)
-.+.+...+.++..+...+
T Consensus 716 ~~g~~~~~~~~~~~a~~~~ 734 (987)
T PRK09782 716 LTPEQNQQRFNFRRLHEEV 734 (987)
T ss_pred hhhHHHHHHHHHHHHHHHH
Confidence 3444444555555554433
No 18
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.47 E-value=1.1e-11 Score=113.20 Aligned_cols=196 Identities=15% Similarity=0.122 Sum_probs=144.7
Q ss_pred CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCC
Q 013867 102 LAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKP 181 (435)
Q Consensus 102 ~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~ 181 (435)
.+.+..+..+.++|..|..+|+|++|+..+++++.. .|..
T Consensus 25 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~----------------------~p~~------------------ 64 (234)
T TIGR02521 25 TDRNKAAKIRVQLALGYLEQGDLEVAKENLDKALEH----------------------DPDD------------------ 64 (234)
T ss_pred ccCCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----------------------Cccc------------------
Confidence 556678999999999999999999999988876221 1110
Q ss_pred CchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCC
Q 013867 182 ENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNT 261 (435)
Q Consensus 182 ~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~ 261 (435)
..+...++.+|..+|++++|+.+|++++++. . .
T Consensus 65 --------------------------------------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---~------~ 97 (234)
T TIGR02521 65 --------------------------------------YLAYLALALYYQQLGELEKAEDSFRRALTLN---P------N 97 (234)
T ss_pred --------------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---C------C
Confidence 0122234667788999999999999999871 1 1
Q ss_pred cccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHH
Q 013867 262 LGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQ 341 (435)
Q Consensus 262 l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~A 341 (435)
. ...+.++|.+|..+|+|++|+.+|++++.. +.+|.....+.++|.+|..+|++++|
T Consensus 98 ~-----------~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~g~~~~A------ 154 (234)
T TIGR02521 98 N-----------GDVLNNYGTFLCQQGKYEQAMQQFEQAIED------PLYPQPARSLENAGLCALKAGDFDKA------ 154 (234)
T ss_pred C-----------HHHHHHHHHHHHHcccHHHHHHHHHHHHhc------cccccchHHHHHHHHHHHHcCCHHHH------
Confidence 0 135679999999999999999999999974 45677778899999999999998776
Q ss_pred HHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHHHhhHhhhhhh----HHHHHHHHHHHHhcccchhHHHH
Q 013867 342 EGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQQNRKD----EGERMKRWAEAAWRNRRVSLAEA 414 (435)
Q Consensus 342 e~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~~~r~~----eae~~~~~a~~~~~~~r~~l~~~ 414 (435)
+..|++++.+. ++++ ....+++.++..+|+|++|......-.. ..+.+...+...++.+....+..
T Consensus 155 ~~~~~~~~~~~----~~~~---~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 224 (234)
T TIGR02521 155 EKYLTRALQID----PQRP---ESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQR 224 (234)
T ss_pred HHHHHHHHHhC----cCCh---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHH
Confidence 89999999874 2233 3556789999999999999887633211 13444445555555555554443
No 19
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.46 E-value=6.9e-12 Score=119.74 Aligned_cols=165 Identities=21% Similarity=0.210 Sum_probs=138.2
Q ss_pred CCCChHHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013867 55 GLNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKV 134 (435)
Q Consensus 55 g~~~~~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ra 134 (435)
-.++..++..++.+|+.|- .+|++..|..-+|++|++. |+.-.++..||.+|..+|+.+-|.+.|++|
T Consensus 28 ~~~~~~aa~arlqLal~YL----~~gd~~~A~~nlekAL~~D--------Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkA 95 (250)
T COG3063 28 QTDRNEAAKARLQLALGYL----QQGDYAQAKKNLEKALEHD--------PSYYLAHLVRAHYYQKLGENDLADESYRKA 95 (250)
T ss_pred cccHHHHHHHHHHHHHHHH----HCCCHHHHHHHHHHHHHhC--------cccHHHHHHHHHHHHHcCChhhHHHHHHHH
Confidence 3577889999999999994 3789999999999999765 788899999999999999999999999987
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccc
Q 013867 135 ENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQE 214 (435)
Q Consensus 135 l~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~ 214 (435)
+.+ +
T Consensus 96 lsl----------------------~------------------------------------------------------ 99 (250)
T COG3063 96 LSL----------------------A------------------------------------------------------ 99 (250)
T ss_pred Hhc----------------------C------------------------------------------------------
Confidence 332 1
Q ss_pred cccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHH
Q 013867 215 EEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAE 294 (435)
Q Consensus 215 ~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe 294 (435)
|..+++.+|||.++|.||+|++|...|++|++- |..+. ...++-|+|.+-.++|+++.|+
T Consensus 100 --p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~----------P~Y~~--------~s~t~eN~G~Cal~~gq~~~A~ 159 (250)
T COG3063 100 --PNNGDVLNNYGAFLCAQGRPEEAMQQFERALAD----------PAYGE--------PSDTLENLGLCALKAGQFDQAE 159 (250)
T ss_pred --CCccchhhhhhHHHHhCCChHHHHHHHHHHHhC----------CCCCC--------cchhhhhhHHHHhhcCCchhHH
Confidence 223468889999999999999999999999976 23331 1246789999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhh
Q 013867 295 EILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHS 335 (435)
Q Consensus 295 ~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A 335 (435)
.+|+|+|.+ .|+...++-.|+.+....|+|-+|
T Consensus 160 ~~l~raL~~--------dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 160 EYLKRALEL--------DPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HHHHHHHHh--------CcCCChHHHHHHHHHHhcccchHH
Confidence 999999986 566667777888899999997766
No 20
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.45 E-value=1e-11 Score=141.54 Aligned_cols=237 Identities=11% Similarity=-0.076 Sum_probs=160.1
Q ss_pred hhcHHHHHHHHHHHHhccCcCCCCCcch--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 013867 79 DESYSQGMLVLEQCLSTQPSDGQLAESW--RGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLY 156 (435)
Q Consensus 79 ~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~--~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~ 156 (435)
.|+..++...++...... +.+|. -+..++++|.++.. |++++|+..|.++........ ..-.++-.+
T Consensus 451 ~~~~~~~~~~~~~~~~al-----~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-----~~L~lA~al 519 (987)
T PRK09782 451 QSQLPGIADNCPAIVRLL-----GDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-----QHRAVAYQA 519 (987)
T ss_pred HhhhhhhhhhHHHHHHhc-----ccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-----HHHHHHHHH
Confidence 455666666666666544 34566 88899999999997 999999999999876554321 111112223
Q ss_pred HhcCCCcchHHHHHHHHH-------------HHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHH
Q 013867 157 LQLGQDDTSSVVADKCLQ-------------LCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAA 223 (435)
Q Consensus 157 ~~~g~~~~A~~~~~~~~~-------------l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a 223 (435)
...|++..|......+.. ++...+ .+.+|.. ...+++. + +|......
T Consensus 520 ~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~G--d~~eA~~--~l~qAL~-----l-----------~P~~~~l~ 579 (987)
T PRK09782 520 YQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAG--NGAARDR--WLQQAEQ-----R-----------GLGDNALY 579 (987)
T ss_pred HHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCC--CHHHHHH--HHHHHHh-----c-----------CCccHHHH
Confidence 456766666555443221 111111 1221211 1112111 0 12222333
Q ss_pred HHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 013867 224 LSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTK 303 (435)
Q Consensus 224 ~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I 303 (435)
..++..+..+|+|++|+.+|++|+++. |+ .....++|.++..+|++++|+..|++++++
T Consensus 580 ~~La~~l~~~Gr~~eAl~~~~~AL~l~------------------P~---~~a~~~LA~~l~~lG~~deA~~~l~~AL~l 638 (987)
T PRK09782 580 WWLHAQRYIPGQPELALNDLTRSLNIA------------------PS---ANAYVARATIYRQRHNVPAAVSDLRAALEL 638 (987)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhC------------------CC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 334444455699999999999999881 11 135689999999999999999999999987
Q ss_pred HHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHHHh
Q 013867 304 TEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEAL 383 (435)
Q Consensus 304 ~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yaeal 383 (435)
+|+-+..++|||.++..+|++++| +.+|++|+++. |+......|++.++..+|++++|+
T Consensus 639 --------~Pd~~~a~~nLG~aL~~~G~~eeA------i~~l~~AL~l~-------P~~~~a~~nLA~al~~lGd~~eA~ 697 (987)
T PRK09782 639 --------EPNNSNYQAALGYALWDSGDIAQS------REMLERAHKGL-------PDDPALIRQLAYVNQRLDDMAATQ 697 (987)
T ss_pred --------CCCCHHHHHHHHHHHHHCCCHHHH------HHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 455667999999999999998776 89999999975 343457789999999999999998
Q ss_pred hHhhh
Q 013867 384 SVQQN 388 (435)
Q Consensus 384 ~~~~~ 388 (435)
...++
T Consensus 698 ~~l~~ 702 (987)
T PRK09782 698 HYARL 702 (987)
T ss_pred HHHHH
Confidence 87643
No 21
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=99.43 E-value=3e-13 Score=107.54 Aligned_cols=78 Identities=18% Similarity=0.123 Sum_probs=71.4
Q ss_pred ChHHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 013867 58 SNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENF 137 (435)
Q Consensus 58 ~~~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i 137 (435)
||.++..+.++|..+.+ +|+|++|+.+|++++.+ .+..|++||.++.++++||.+|..+|+|++|+++|+++++|
T Consensus 1 H~~~a~~~~~la~~~~~----~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 1 HPDTANAYNNLARVYRE----LGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp -HHHHHHHHHHHHHHHH----TT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 89999999999999953 68999999999999999 77889999999999999999999999999999999999888
Q ss_pred hhh
Q 013867 138 KNS 140 (435)
Q Consensus 138 ~e~ 140 (435)
.++
T Consensus 76 ~~k 78 (78)
T PF13424_consen 76 FEK 78 (78)
T ss_dssp HHH
T ss_pred hcC
Confidence 753
No 22
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.41 E-value=2.1e-11 Score=129.88 Aligned_cols=274 Identities=15% Similarity=0.179 Sum_probs=178.1
Q ss_pred hHHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 013867 59 NPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFK 138 (435)
Q Consensus 59 ~~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~ 138 (435)
..+-..|-.+|..+ +.. ++-+..+|+..|++ + ...|+.|..++.++|..|+++++|++|+..|+.+..+.
T Consensus 314 ~~l~~llr~~~~~~-~~~-s~y~~~~A~~~~~k-l-------p~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~ 383 (638)
T KOG1126|consen 314 SELMELLRGLGEGY-RSL-SQYNCREALNLFEK-L-------PSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIE 383 (638)
T ss_pred HHHHHHHHHHHHHH-HHH-HHHHHHHHHHHHHh-h-------HHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 35666677777777 333 66778889988888 4 24478899999999999999999999999999875543
Q ss_pred hhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccc
Q 013867 139 NSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGC 218 (435)
Q Consensus 139 e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~ 218 (435)
.--+. -+ +++-+.+.-+... -++-..++ +++. .++.
T Consensus 384 p~rv~----~m-----------------eiyST~LWHLq~~--------v~Ls~Laq---~Li~------------~~~~ 419 (638)
T KOG1126|consen 384 PYRVK----GM-----------------EIYSTTLWHLQDE--------VALSYLAQ---DLID------------TDPN 419 (638)
T ss_pred ccccc----ch-----------------hHHHHHHHHHHhh--------HHHHHHHH---HHHh------------hCCC
Confidence 32211 00 1111111111100 11212222 1111 1123
Q ss_pred hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccC------CCCCccc-------------ccccchHHHHHHHHH
Q 013867 219 TGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFS------DMNTLGS-------------CNMALEEVALAATFA 279 (435)
Q Consensus 219 ~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~------~~~~l~~-------------~~~~~~~~~l~~l~n 279 (435)
-+.+-..+|.+|.-|++++.|+.+|+||+++ ..+|. +|....- --+.|.|. .++.+
T Consensus 420 sPesWca~GNcfSLQkdh~~Aik~f~RAiQl---dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhY--nAwYG 494 (638)
T KOG1126|consen 420 SPESWCALGNCFSLQKDHDTAIKCFKRAIQL---DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHY--NAWYG 494 (638)
T ss_pred CcHHHHHhcchhhhhhHHHHHHHHHHHhhcc---CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhh--HHHHh
Confidence 3345555677777788888888888888777 22211 1111000 01235543 57899
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCC
Q 013867 280 LGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLES 359 (435)
Q Consensus 280 La~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~h 359 (435)
||.+|.+|+||+.||-.|++|++| .|.--..+..+|..|.+.|+.|+| ..+|++|+.+-.+
T Consensus 495 lG~vy~Kqek~e~Ae~~fqkA~~I--------NP~nsvi~~~~g~~~~~~k~~d~A------L~~~~~A~~ld~k----- 555 (638)
T KOG1126|consen 495 LGTVYLKQEKLEFAEFHFQKAVEI--------NPSNSVILCHIGRIQHQLKRKDKA------LQLYEKAIHLDPK----- 555 (638)
T ss_pred hhhheeccchhhHHHHHHHhhhcC--------CccchhHHhhhhHHHHHhhhhhHH------HHHHHHHHhcCCC-----
Confidence 999999999999999999999998 688899999999999999998877 7889888876522
Q ss_pred CchhhhhccHHHHHHHhcCHHHHhhHhhh----hhhHHHHHHHHHHHHhcccchhHH
Q 013867 360 EGVETKVDRTDIVALARGGYAEALSVQQN----RKDEGERMKRWAEAAWRNRRVSLA 412 (435)
Q Consensus 360 p~~a~~l~nla~~~~a~G~yaeal~~~~~----r~~eae~~~~~a~~~~~~~r~~l~ 412 (435)
+....+ +.+.++...++|.||+...+. .-.|+-..+-....+-+-++..+|
T Consensus 556 -n~l~~~-~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~A 610 (638)
T KOG1126|consen 556 -NPLCKY-HRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLA 610 (638)
T ss_pred -CchhHH-HHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHH
Confidence 334333 577888899999999876532 223455555566666555554444
No 23
>PRK12370 invasion protein regulator; Provisional
Probab=99.38 E-value=6.7e-11 Score=127.59 Aligned_cols=209 Identities=12% Similarity=0.037 Sum_probs=138.7
Q ss_pred ChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhhhhhHHHHHHH
Q 013867 78 SDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYES---------GNYVEAIEKLQKVENFKNSILGVRVAA 148 (435)
Q Consensus 78 s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~q---------Gky~eA~~l~~ral~i~e~~L~i~vaa 148 (435)
..+.+++|+.+|++++++. |.-+..+.+||.+|... |++++|+..+++++++.....
T Consensus 273 ~~~~~~~A~~~~~~Al~ld--------P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~------ 338 (553)
T PRK12370 273 TPYSLQQALKLLTQCVNMS--------PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNP------ 338 (553)
T ss_pred CHHHHHHHHHHHHHHHhcC--------CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCH------
Confidence 5678999999999999655 45567778888876643 458999999999866543221
Q ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHH
Q 013867 149 MEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGE 228 (435)
Q Consensus 149 le~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~ 228 (435)
.. ......++...+ .+++|... ..+++. +. |+...+...+|.
T Consensus 339 -----------------~a-~~~lg~~~~~~g--~~~~A~~~--~~~Al~-----l~-----------P~~~~a~~~lg~ 380 (553)
T PRK12370 339 -----------------QA-LGLLGLINTIHS--EYIVGSLL--FKQANL-----LS-----------PISADIKYYYGW 380 (553)
T ss_pred -----------------HH-HHHHHHHHHHcc--CHHHHHHH--HHHHHH-----hC-----------CCCHHHHHHHHH
Confidence 11 111222222333 24444443 334333 12 444567778899
Q ss_pred HHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhh
Q 013867 229 YLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELF 308 (435)
Q Consensus 229 ~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~l 308 (435)
+|..+|++++|+.+|++++++- +... .....++.++..+|+|++|+..+++++..
T Consensus 381 ~l~~~G~~~eAi~~~~~Al~l~--------P~~~------------~~~~~~~~~~~~~g~~eeA~~~~~~~l~~----- 435 (553)
T PRK12370 381 NLFMAGQLEEALQTINECLKLD--------PTRA------------AAGITKLWITYYHTGIDDAIRLGDELRSQ----- 435 (553)
T ss_pred HHHHCCCHHHHHHHHHHHHhcC--------CCCh------------hhHHHHHHHHHhccCHHHHHHHHHHHHHh-----
Confidence 9999999999999999999881 1111 12234555677799999999999998754
Q ss_pred CCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcC
Q 013867 309 GSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGG 378 (435)
Q Consensus 309 G~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~ 378 (435)
.+|+....+.++|.+|..+|++++| +..+++.+.. .|+-....++++.+|..+|+
T Consensus 436 --~~p~~~~~~~~la~~l~~~G~~~eA------~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~ 490 (553)
T PRK12370 436 --HLQDNPILLSMQVMFLSLKGKHELA------RKLTKEISTQ-------EITGLIAVNLLYAEYCQNSE 490 (553)
T ss_pred --ccccCHHHHHHHHHHHHhCCCHHHH------HHHHHHhhhc-------cchhHHHHHHHHHHHhccHH
Confidence 3455566789999999999998877 6666654222 23333455667777777775
No 24
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.33 E-value=3.8e-11 Score=114.71 Aligned_cols=174 Identities=18% Similarity=0.154 Sum_probs=134.5
Q ss_pred CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCC
Q 013867 102 LAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKP 181 (435)
Q Consensus 102 ~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~ 181 (435)
.++...+.....||.-|..+|++..|...+++|+.+. |.
T Consensus 29 ~~~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~D----------------------Ps------------------- 67 (250)
T COG3063 29 TDRNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHD----------------------PS------------------- 67 (250)
T ss_pred ccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----------------------cc-------------------
Confidence 4555678889999999999999999998888873321 11
Q ss_pred CchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCC
Q 013867 182 ENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNT 261 (435)
Q Consensus 182 ~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~ 261 (435)
...+-..+|.+|..+|..+.|.+.|++||.+ +|.
T Consensus 68 -------------------------------------~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl---------~p~ 101 (250)
T COG3063 68 -------------------------------------YYLAHLVRAHYYQKLGENDLADESYRKALSL---------APN 101 (250)
T ss_pred -------------------------------------cHHHHHHHHHHHHHcCChhhHHHHHHHHHhc---------CCC
Confidence 1122234577889999999999999999998 112
Q ss_pred cccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHH
Q 013867 262 LGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQ 341 (435)
Q Consensus 262 l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~A 341 (435)
-| ..+||.|-.++.||+|++|...|++|++ -|.-|..+.++.|+|.+-.++|+.++|
T Consensus 102 ~G-----------dVLNNYG~FLC~qg~~~eA~q~F~~Al~------~P~Y~~~s~t~eN~G~Cal~~gq~~~A------ 158 (250)
T COG3063 102 NG-----------DVLNNYGAFLCAQGRPEEAMQQFERALA------DPAYGEPSDTLENLGLCALKAGQFDQA------ 158 (250)
T ss_pred cc-----------chhhhhhHHHHhCCChHHHHHHHHHHHh------CCCCCCcchhhhhhHHHHhhcCCchhH------
Confidence 23 3589999999999999999999999987 488899999999999999999998877
Q ss_pred HHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHHHhhHhhhhhhH
Q 013867 342 EGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQQNRKDE 392 (435)
Q Consensus 342 e~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~~~r~~e 392 (435)
+..|+|+|++-.. -|.+. --++-.....|+|.+|....+....-
T Consensus 159 ~~~l~raL~~dp~----~~~~~---l~~a~~~~~~~~y~~Ar~~~~~~~~~ 202 (250)
T COG3063 159 EEYLKRALELDPQ----FPPAL---LELARLHYKAGDYAPARLYLERYQQR 202 (250)
T ss_pred HHHHHHHHHhCcC----CChHH---HHHHHHHHhcccchHHHHHHHHHHhc
Confidence 8999999999732 23322 22445566789999998776444433
No 25
>PRK12370 invasion protein regulator; Provisional
Probab=99.32 E-value=4.5e-10 Score=121.21 Aligned_cols=226 Identities=8% Similarity=-0.078 Sum_probs=144.9
Q ss_pred ChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 013867 78 SDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYL 157 (435)
Q Consensus 78 s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~ 157 (435)
..+++++|+..+++++++. |.-+..+..+|.++..+|+|++|+..|++++.+...... ++..
T Consensus 316 ~~~~~~~A~~~~~~Al~ld--------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~----a~~~------ 377 (553)
T PRK12370 316 KQNAMIKAKEHAIKATELD--------HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISAD----IKYY------ 377 (553)
T ss_pred cchHHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH----HHHH------
Confidence 3467999999999999664 445667889999999999999999999999765433211 1112
Q ss_pred hcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchH
Q 013867 158 QLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFL 237 (435)
Q Consensus 158 ~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~ 237 (435)
...++...+. +++|.. ...+++. +.+. .......++.++..+|+|+
T Consensus 378 --------------lg~~l~~~G~--~~eAi~--~~~~Al~-----l~P~-----------~~~~~~~~~~~~~~~g~~e 423 (553)
T PRK12370 378 --------------YGWNLFMAGQ--LEEALQ--TINECLK-----LDPT-----------RAAAGITKLWITYYHTGID 423 (553)
T ss_pred --------------HHHHHHHCCC--HHHHHH--HHHHHHh-----cCCC-----------ChhhHHHHHHHHHhccCHH
Confidence 2222223332 443333 3333333 2222 1122233445566789999
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHH
Q 013867 238 LAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGV 317 (435)
Q Consensus 238 eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~ 317 (435)
+|+.+|++++... + |++ .....+||.+|..+|++++|+..+.+.+ +..|.-..
T Consensus 424 eA~~~~~~~l~~~--------~---------p~~--~~~~~~la~~l~~~G~~~eA~~~~~~~~--------~~~~~~~~ 476 (553)
T PRK12370 424 DAIRLGDELRSQH--------L---------QDN--PILLSMQVMFLSLKGKHELARKLTKEIS--------TQEITGLI 476 (553)
T ss_pred HHHHHHHHHHHhc--------c---------ccC--HHHHHHHHHHHHhCCCHHHHHHHHHHhh--------hccchhHH
Confidence 9999999988661 1 111 1346789999999999999999987753 34677778
Q ss_pred HHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHHHhhHhhhhhhHHHHHH
Q 013867 318 VLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQQNRKDEGERMK 397 (435)
Q Consensus 318 ~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~~~r~~eae~~~ 397 (435)
..+.|+..|..+|+ +| ...+++.++..+. .+.++.. .+.++--+|+-+.+..+ .+-.+++..|.
T Consensus 477 ~~~~l~~~~~~~g~--~a------~~~l~~ll~~~~~-~~~~~~~------~~~~~~~~g~~~~~~~~-~~~~~~~~~~~ 540 (553)
T PRK12370 477 AVNLLYAEYCQNSE--RA------LPTIREFLESEQR-IDNNPGL------LPLVLVAHGEAIAEKMW-NKFKNEDNIWF 540 (553)
T ss_pred HHHHHHHHHhccHH--HH------HHHHHHHHHHhhH-hhcCchH------HHHHHHHHhhhHHHHHH-HHhhccchHhh
Confidence 88999999999985 33 5666665555432 2333332 56667777776666555 23334444444
Q ss_pred H
Q 013867 398 R 398 (435)
Q Consensus 398 ~ 398 (435)
+
T Consensus 541 ~ 541 (553)
T PRK12370 541 K 541 (553)
T ss_pred h
Confidence 3
No 26
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.31 E-value=1.2e-09 Score=123.01 Aligned_cols=291 Identities=14% Similarity=0.050 Sum_probs=182.0
Q ss_pred hhcHHHHHHHHHHHHhccCcCCCCCcc-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHH-HHHHHHHHHHHH
Q 013867 79 DESYSQGMLVLEQCLSTQPSDGQLAES-WRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGV-RVAAMEALAGLY 156 (435)
Q Consensus 79 ~G~Y~eA~~~~eqaL~i~~~~lG~~Hp-~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i-~vaale~L~g~~ 156 (435)
.|++++|..+++++...........++ ..+.....++.++..+|+|++|+..+++++......... ...++..++..+
T Consensus 422 ~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~ 501 (903)
T PRK04841 422 QHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVH 501 (903)
T ss_pred CCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHH
Confidence 578999999999998765433212222 245566678999999999999999999987642211110 111122222222
Q ss_pred HhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhch
Q 013867 157 LQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNF 236 (435)
Q Consensus 157 ~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y 236 (435)
...|. ++++...+..+..+. ...|..+ ....+..+++.++..+|++
T Consensus 502 ~~~G~----------------------~~~A~~~~~~al~~~---~~~g~~~---------~~~~~~~~la~~~~~~G~~ 547 (903)
T PRK04841 502 HCKGE----------------------LARALAMMQQTEQMA---RQHDVYH---------YALWSLLQQSEILFAQGFL 547 (903)
T ss_pred HHcCC----------------------HHHHHHHHHHHHHHH---hhhcchH---------HHHHHHHHHHHHHHHCCCH
Confidence 22222 443434333333221 1222211 1223556778899999999
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHH
Q 013867 237 LLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVG 316 (435)
Q Consensus 237 ~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va 316 (435)
++|+.++++++++.+...+ ..... .......+|.++..+|++++|+.++++++.+.+.. + .+..+
T Consensus 548 ~~A~~~~~~al~~~~~~~~---~~~~~---------~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~-~--~~~~~ 612 (903)
T PRK04841 548 QAAYETQEKAFQLIEEQHL---EQLPM---------HEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNY-Q--PQQQL 612 (903)
T ss_pred HHHHHHHHHHHHHHHHhcc---ccccH---------HHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhcc-C--chHHH
Confidence 9999999999999654211 10110 11235678999999999999999999999998743 2 33466
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCC-------------------------------------CC
Q 013867 317 VVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPL-------------------------------------ES 359 (435)
Q Consensus 317 ~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~-------------------------------------~h 359 (435)
.++.++|.++..+|++++| ...+++++.+....+. ..
T Consensus 613 ~~~~~la~~~~~~G~~~~A------~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~ 686 (903)
T PRK04841 613 QCLAMLAKISLARGDLDNA------RRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFAN 686 (903)
T ss_pred HHHHHHHHHHHHcCCHHHH------HHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCcc
Confidence 7889999999999998877 6777777766532110 00
Q ss_pred Cc-hhhhhccHHHHHHHhcCHHHHhhHhhhhh----------hHHHHHHHHHHHHhcccchh-----HHHHhcccCCCCC
Q 013867 360 EG-VETKVDRTDIVALARGGYAEALSVQQNRK----------DEGERMKRWAEAAWRNRRVS-----LAEALNFSEPSNK 423 (435)
Q Consensus 360 p~-~a~~l~nla~~~~a~G~yaeal~~~~~r~----------~eae~~~~~a~~~~~~~r~~-----l~~~l~~~~~~~~ 423 (435)
+. ......+++.++..+|+|++|+.....-. ..++.+...+..+|+.++.. +.+||+...+.|.
T Consensus 687 ~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~g~ 766 (903)
T PRK04841 687 NHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRTGF 766 (903)
T ss_pred chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCccch
Confidence 00 00112367778889999999877653221 22445556888888877754 4456666666654
Q ss_pred C
Q 013867 424 P 424 (435)
Q Consensus 424 ~ 424 (435)
.
T Consensus 767 ~ 767 (903)
T PRK04841 767 I 767 (903)
T ss_pred h
Confidence 3
No 27
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.31 E-value=5.8e-10 Score=125.68 Aligned_cols=143 Identities=20% Similarity=0.157 Sum_probs=117.8
Q ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013867 222 AALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTL 301 (435)
Q Consensus 222 ~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL 301 (435)
+...++.++..+|+|++|..+|++++++..+ .+ +.+..+.+++++|.++..+|++++|+.++++++
T Consensus 493 a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~-~g-------------~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al 558 (903)
T PRK04841 493 ATSVLGEVHHCKGELARALAMMQQTEQMARQ-HD-------------VYHYALWSLLQQSEILFAQGFLQAAYETQEKAF 558 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh-hc-------------chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4456788889999999999999999999642 11 111234577899999999999999999999999
Q ss_pred HHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHH
Q 013867 302 TKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAE 381 (435)
Q Consensus 302 ~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yae 381 (435)
.+.++..++.+|..+..+.++|.++..+|++++| +.++++++++.+..+ .+.....+.+++.++..+|++++
T Consensus 559 ~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A------~~~~~~al~~~~~~~--~~~~~~~~~~la~~~~~~G~~~~ 630 (903)
T PRK04841 559 QLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEA------EQCARKGLEVLSNYQ--PQQQLQCLAMLAKISLARGDLDN 630 (903)
T ss_pred HHHHHhccccccHHHHHHHHHHHHHHHhcCHHHH------HHHHHHhHHhhhccC--chHHHHHHHHHHHHHHHcCCHHH
Confidence 9999988888888888889999999999998776 899999999987443 22344566789999999999999
Q ss_pred HhhHh
Q 013867 382 ALSVQ 386 (435)
Q Consensus 382 al~~~ 386 (435)
|....
T Consensus 631 A~~~l 635 (903)
T PRK04841 631 ARRYL 635 (903)
T ss_pred HHHHH
Confidence 97755
No 28
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.30 E-value=3.1e-09 Score=118.93 Aligned_cols=268 Identities=11% Similarity=-0.005 Sum_probs=143.2
Q ss_pred HHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHH
Q 013867 67 NYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRV 146 (435)
Q Consensus 67 ~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~v 146 (435)
.+|..+. ..|++++|+.+++++++.. |.-+. +..+|.+|..+|++++|+..|++++++.......
T Consensus 88 ~la~~l~----~~g~~~eA~~~l~~~l~~~--------P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~-- 152 (765)
T PRK10049 88 GLILTLA----DAGQYDEALVKAKQLVSGA--------PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQY-- 152 (765)
T ss_pred HHHHHHH----HCCCHHHHHHHHHHHHHhC--------CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH--
Confidence 4555553 2567788888888877443 33344 7777888888888888888888887765543221
Q ss_pred HHHHHHHHHHHhcCCCcchHHHHHHH---------------HHHHHhcCCCchhchhhHHHHHHHHHHHHHHhc--CCCc
Q 013867 147 AAMEALAGLYLQLGQDDTSSVVADKC---------------LQLCEKHKPENYKTYGAVNSRANAVKGLVELAH--GNLE 209 (435)
Q Consensus 147 aale~L~g~~~~~g~~~~A~~~~~~~---------------~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lg--g~h~ 209 (435)
+-.++..+...+....|....+.. .............+.+......+|+...-..+. ...|
T Consensus 153 --~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p 230 (765)
T PRK10049 153 --PTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNP 230 (765)
T ss_pred --HHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCC
Confidence 112222333334443333222210 001100000000000000001223322111121 2222
Q ss_pred ccccccccchhHHHHH-HHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcC
Q 013867 210 SGLQEEEGCTGSAALS-YGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMG 288 (435)
Q Consensus 210 ~a~~~~~~~~~~~a~~-la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG 288 (435)
+.. +....+... ++ .+..+|+|++|+..|+++++. + ++. |+. ....+|.+|..+|
T Consensus 231 ~~~----~~~~~a~~d~l~-~Ll~~g~~~eA~~~~~~ll~~-----~---~~~-------P~~----a~~~la~~yl~~g 286 (765)
T PRK10049 231 DAT----ADYQRARIDRLG-ALLARDRYKDVISEYQRLKAE-----G---QII-------PPW----AQRWVASAYLKLH 286 (765)
T ss_pred ccc----hHHHHHHHHHHH-HHHHhhhHHHHHHHHHHhhcc-----C---CCC-------CHH----HHHHHHHHHHhcC
Confidence 211 112222222 33 345779999999999997765 1 101 211 1233688999999
Q ss_pred CHHHHHHHHHHHHHHHHHhhCCCChhH-HHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhc----C--CCCCCCc
Q 013867 289 NFGDAEEILTRTLTKTEELFGSHHPKV-GVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLK----A--PPLESEG 361 (435)
Q Consensus 289 ~y~eAe~l~~rAL~I~e~~lG~~HP~v-a~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k----~--~~~~hp~ 361 (435)
++++|+.+|+++++. .+.++.. .....+|+.+|..+|++++| ..+++++++..- . ....+|+
T Consensus 287 ~~e~A~~~l~~~l~~-----~p~~~~~~~~~~~~L~~a~~~~g~~~eA------~~~l~~~~~~~P~~~~~~~~~~~~p~ 355 (765)
T PRK10049 287 QPEKAQSILTELFYH-----PETIADLSDEELADLFYSLLESENYPGA------LTVTAHTINNSPPFLRLYGSPTSIPN 355 (765)
T ss_pred CcHHHHHHHHHHhhc-----CCCCCCCChHHHHHHHHHHHhcccHHHH------HHHHHHHhhcCCceEeecCCCCCCCC
Confidence 999999999998853 2333222 35677888889999998877 677777776531 0 0122332
Q ss_pred --hhhhhccHHHHHHHhcCHHHHhhHh
Q 013867 362 --VETKVDRTDIVALARGGYAEALSVQ 386 (435)
Q Consensus 362 --~a~~l~nla~~~~a~G~yaeal~~~ 386 (435)
-.....+++.++..+|++++|+...
T Consensus 356 ~~~~~a~~~~a~~l~~~g~~~eA~~~l 382 (765)
T PRK10049 356 DDWLQGQSLLSQVAKYSNDLPQAEMRA 382 (765)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 1223345667777777777776654
No 29
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.25 E-value=1.4e-09 Score=121.69 Aligned_cols=138 Identities=12% Similarity=-0.008 Sum_probs=101.2
Q ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013867 223 ALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLT 302 (435)
Q Consensus 223 a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~ 302 (435)
...++..+..+|+|++|..++++++...-.. ....+.....|++........+|.++..+|++++|+.++++++.
T Consensus 313 ~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~-----~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~ 387 (765)
T PRK10049 313 LADLFYSLLESENYPGALTVTAHTINNSPPF-----LRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAY 387 (765)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHhhcCCce-----EeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445556678899999999988888761000 00111101124433445667899999999999999999999997
Q ss_pred HHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHHH
Q 013867 303 KTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEA 382 (435)
Q Consensus 303 I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yaea 382 (435)
+ +|+-...+.++|.+|..+|++++| +..+++++++. |+.+. ....++.++..+|+|++|
T Consensus 388 ~--------~P~n~~l~~~lA~l~~~~g~~~~A------~~~l~~al~l~----Pd~~~---l~~~~a~~al~~~~~~~A 446 (765)
T PRK10049 388 N--------APGNQGLRIDYASVLQARGWPRAA------ENELKKAEVLE----PRNIN---LEVEQAWTALDLQEWRQM 446 (765)
T ss_pred h--------CCCCHHHHHHHHHHHHhcCCHHHH------HHHHHHHHhhC----CCChH---HHHHHHHHHHHhCCHHHH
Confidence 6 455567999999999999998776 89999999876 33333 445678889999999999
Q ss_pred hhHh
Q 013867 383 LSVQ 386 (435)
Q Consensus 383 l~~~ 386 (435)
+...
T Consensus 447 ~~~~ 450 (765)
T PRK10049 447 DVLT 450 (765)
T ss_pred HHHH
Confidence 8876
No 30
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.20 E-value=7.7e-11 Score=115.52 Aligned_cols=256 Identities=20% Similarity=0.171 Sum_probs=82.1
Q ss_pred HHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHH
Q 013867 66 INYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVR 145 (435)
Q Consensus 66 ~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~ 145 (435)
+.+|..+++ .|++++|+.++++...... .|+-...+..+|.+....|++++|+..|++.+.+......
T Consensus 12 l~~A~~~~~----~~~~~~Al~~L~~~~~~~~------~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~-- 79 (280)
T PF13429_consen 12 LRLARLLYQ----RGDYEKALEVLKKAAQKIA------PPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQ-- 79 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccc----ccccccccccccccccccc------cccccccccccccccccccccccccccccccccccccccc--
Confidence 366888864 5899999999977653321 1223355667899999999999999999998765443221
Q ss_pred HHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhch----hhHHHHHHHHHHHHHHhcCCCcccccccccchhH
Q 013867 146 VAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTY----GAVNSRANAVKGLVELAHGNLESGLQEEEGCTGS 221 (435)
Q Consensus 146 vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~ea----eal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~ 221 (435)
...++..+ ...+.+..|..++.....-.. .+.....+ .....+..+.. .++.+... + ..+....
T Consensus 80 --~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~--~~~~l~~~l~~~~~~~~~~~~~~-~l~~~~~~-~-----~~~~~~~ 147 (280)
T PF13429_consen 80 --DYERLIQL-LQDGDPEEALKLAEKAYERDG--DPRYLLSALQLYYRLGDYDEAEE-LLEKLEEL-P-----AAPDSAR 147 (280)
T ss_dssp -------------------------------------------H-HHHTT-HHHHHH-HHHHHHH--T--------T-HH
T ss_pred --cccccccc-ccccccccccccccccccccc--ccchhhHHHHHHHHHhHHHHHHH-HHHHHHhc-c-----CCCCCHH
Confidence 23444444 344555444433322111100 00000000 00000001110 11111100 0 0012234
Q ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013867 222 AALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTL 301 (435)
Q Consensus 222 ~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL 301 (435)
....+|.++..+|++++|+.+|++||+.. |++ ....++|+.++..+|+++++.+++++..
T Consensus 148 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~------------------P~~--~~~~~~l~~~li~~~~~~~~~~~l~~~~ 207 (280)
T PF13429_consen 148 FWLALAEIYEQLGDPDKALRDYRKALELD------------------PDD--PDARNALAWLLIDMGDYDEAREALKRLL 207 (280)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHH-------------------TT---HHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC------------------CCC--HHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 55667888889999999999999999881 111 1346778888999999998777776655
Q ss_pred HHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHH
Q 013867 302 TKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAE 381 (435)
Q Consensus 302 ~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yae 381 (435)
... +..|. .+..+|.+|...|++++| ...|++++... |+-...+.+++.++...|++++
T Consensus 208 ~~~-----~~~~~---~~~~la~~~~~lg~~~~A------l~~~~~~~~~~-------p~d~~~~~~~a~~l~~~g~~~~ 266 (280)
T PF13429_consen 208 KAA-----PDDPD---LWDALAAAYLQLGRYEEA------LEYLEKALKLN-------PDDPLWLLAYADALEQAGRKDE 266 (280)
T ss_dssp HH------HTSCC---HCHHHHHHHHHHT-HHHH------HHHHHHHHHHS-------TT-HHHHHHHHHHHT-------
T ss_pred HHC-----cCHHH---HHHHHHHHhccccccccc------ccccccccccc-------cccccccccccccccccccccc
Confidence 554 55555 456779999999987766 78888877655 3323355567888888888888
Q ss_pred HhhHh
Q 013867 382 ALSVQ 386 (435)
Q Consensus 382 al~~~ 386 (435)
|..+.
T Consensus 267 A~~~~ 271 (280)
T PF13429_consen 267 ALRLR 271 (280)
T ss_dssp -----
T ss_pred ccccc
Confidence 87765
No 31
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.18 E-value=4.3e-09 Score=116.27 Aligned_cols=327 Identities=17% Similarity=0.148 Sum_probs=202.1
Q ss_pred CCCChHHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013867 55 GLNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKV 134 (435)
Q Consensus 55 g~~~~~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ra 134 (435)
..+||+=..-++--|... + ..++|..|+.+|+.+|.|.+.. +..|.++ +|..+++.|+-+.|+--|+|+
T Consensus 157 l~~sp~Nil~LlGkA~i~--y--nkkdY~~al~yyk~al~inp~~--~aD~rIg-----ig~Cf~kl~~~~~a~~a~~ra 225 (1018)
T KOG2002|consen 157 LKQSPDNILALLGKARIA--Y--NKKDYRGALKYYKKALRINPAC--KADVRIG-----IGHCFWKLGMSEKALLAFERA 225 (1018)
T ss_pred HhhCCcchHHHHHHHHHH--h--ccccHHHHHHHHHHHHhcCccc--CCCccch-----hhhHHHhccchhhHHHHHHHH
Confidence 566677666777666654 3 4679999999999999998753 3445554 456899999999999999999
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccc
Q 013867 135 ENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQE 214 (435)
Q Consensus 135 l~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~ 214 (435)
+.+.+...++.+ .|+. ......+. ......+.++......+.. .|...--.|-. ...-|+|+.+..+
T Consensus 226 lqLdp~~v~alv----~L~~-~~l~~~d~---~s~~~~~~ll~~ay~~n~~--nP~~l~~LAn~---fyfK~dy~~v~~l 292 (1018)
T KOG2002|consen 226 LQLDPTCVSALV----ALGE-VDLNFNDS---DSYKKGVQLLQRAYKENNE--NPVALNHLANH---FYFKKDYERVWHL 292 (1018)
T ss_pred HhcChhhHHHHH----HHHH-HHHHccch---HHHHHHHHHHHHHHhhcCC--CcHHHHHHHHH---HhhcccHHHHHHH
Confidence 988775544322 1111 11222221 2233333333322211100 11111111110 1122333332211
Q ss_pred c---------ccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHH
Q 013867 215 E---------EGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEA 285 (435)
Q Consensus 215 ~---------~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~ 285 (435)
. .+........+|..||.+|+|++|..+|.+++.. ..+ +.. -++..||+.|.
T Consensus 293 a~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~---~~d---~~~-------------l~~~GlgQm~i 353 (1018)
T KOG2002|consen 293 AEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA---DND---NFV-------------LPLVGLGQMYI 353 (1018)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---CCC---Ccc-------------ccccchhHHHH
Confidence 1 1112223455788999999999999999999988 221 112 23568999999
Q ss_pred HcCCHHHHHHHHHHHHHHHH------HhhCCCChhH------------------------HHHHHHHHHHHHHhhhhhhh
Q 013867 286 HMGNFGDAEEILTRTLTKTE------ELFGSHHPKV------------------------GVVLTCLALMFRNKAMQEHS 335 (435)
Q Consensus 286 ~qG~y~eAe~l~~rAL~I~e------~~lG~~HP~v------------------------a~~L~nLA~ly~~qG~~e~A 335 (435)
++|++.+|+.+|++.+.... +++|.=|-.. ....-+||.+|..+.-+
T Consensus 354 ~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~--- 430 (1018)
T KOG2002|consen 354 KRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPW--- 430 (1018)
T ss_pred HhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChH---
Confidence 99999999999999887642 2233222221 22334444444433221
Q ss_pred hhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHHHhhHhhhhhhHH-------H-------HHHHHHH
Q 013867 336 SALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQQNRKDEG-------E-------RMKRWAE 401 (435)
Q Consensus 336 ~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~~~r~~ea-------e-------~~~~~a~ 401 (435)
.+...|.+|++|+...+-.-| ...+||+|.++...|.+.+|+..+....+.. + .-++.|.
T Consensus 431 ----~sL~~~~~A~d~L~~~~~~ip--~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlar 504 (1018)
T KOG2002|consen 431 ----ASLDAYGNALDILESKGKQIP--PEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLAR 504 (1018)
T ss_pred ----HHHHHHHHHHHHHHHcCCCCC--HHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHH
Confidence 237889999999964332223 5689999999999999999988774433331 1 3557777
Q ss_pred HHhcccchhHHHHhcccCCCCCCceeeecccc
Q 013867 402 AAWRNRRVSLAEALNFSEPSNKPLVIDARTSR 433 (435)
Q Consensus 402 ~~~~~~r~~l~~~l~~~~~~~~~~~~~~r~~r 433 (435)
-.-...+.++|+....+=..-+|.-||+|++-
T Consensus 505 l~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl 536 (1018)
T KOG2002|consen 505 LLEELHDTEVAEEMYKSILKEHPGYIDAYLRL 536 (1018)
T ss_pred HHHhhhhhhHHHHHHHHHHHHCchhHHHHHHh
Confidence 77788888888888876665667789988763
No 32
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.18 E-value=1.9e-09 Score=102.51 Aligned_cols=192 Identities=12% Similarity=0.094 Sum_probs=130.7
Q ss_pred CCChHHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013867 56 LNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVE 135 (435)
Q Consensus 56 ~~~~~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral 135 (435)
|..+..+..+.+.|..+. ..|+|++|+..|++.+... +++|.....+..+|.+|..+|+|++|+..|++++
T Consensus 27 ~~~~~~~~~~~~~g~~~~----~~~~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l 97 (235)
T TIGR03302 27 PVEEWPAEELYEEAKEAL----DSGDYTEAIKYFEALESRY-----PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFI 97 (235)
T ss_pred CcccCCHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHhC-----CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 555667778888888874 3689999999999998766 6678888899999999999999999999999984
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCccccccc
Q 013867 136 NFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEE 215 (435)
Q Consensus 136 ~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~ 215 (435)
.. .|...-.. ..++....... ..
T Consensus 98 ~~----------------------~p~~~~~~--------------------~a~~~~g~~~~---~~------------ 120 (235)
T TIGR03302 98 RL----------------------HPNHPDAD--------------------YAYYLRGLSNY---NQ------------ 120 (235)
T ss_pred HH----------------------CcCCCchH--------------------HHHHHHHHHHH---Hh------------
Confidence 43 22211000 00100000000 00
Q ss_pred ccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCccccccc----chHHHHHHHHHHHHHHHHcCCHH
Q 013867 216 EGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMA----LEEVALAATFALGQLEAHMGNFG 291 (435)
Q Consensus 216 ~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~----~~~~~l~~l~nLa~ly~~qG~y~ 291 (435)
++.++..+|++++|...|++++... - ++ ........ ..........++|.+|..+|+|.
T Consensus 121 ----------~~~~~~~~~~~~~A~~~~~~~~~~~---p---~~-~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~ 183 (235)
T TIGR03302 121 ----------IDRVDRDQTAAREAFEAFQELIRRY---P---NS-EYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYV 183 (235)
T ss_pred ----------cccccCCHHHHHHHHHHHHHHHHHC---C---CC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChH
Confidence 0112345688999999999998772 1 11 11100000 00000011237899999999999
Q ss_pred HHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhh
Q 013867 292 DAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHS 335 (435)
Q Consensus 292 eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A 335 (435)
+|...|++++..+ |++|.....+.++|.+|...|++++|
T Consensus 184 ~A~~~~~~al~~~-----p~~~~~~~a~~~l~~~~~~lg~~~~A 222 (235)
T TIGR03302 184 AAINRFETVVENY-----PDTPATEEALARLVEAYLKLGLKDLA 222 (235)
T ss_pred HHHHHHHHHHHHC-----CCCcchHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999873 56799999999999999999998776
No 33
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.17 E-value=2.3e-09 Score=106.86 Aligned_cols=207 Identities=12% Similarity=0.019 Sum_probs=131.1
Q ss_pred ChHHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 013867 58 SNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENF 137 (435)
Q Consensus 58 ~~~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i 137 (435)
.+..+.-..++|..+. +.|++++|+..|++++++. |.-+..++++|.+|..+|+|++|++.|++++.+
T Consensus 60 ~~~~a~~~~~~g~~~~----~~g~~~~A~~~~~~Al~l~--------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l 127 (296)
T PRK11189 60 DEERAQLHYERGVLYD----SLGLRALARNDFSQALALR--------PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL 127 (296)
T ss_pred cHhhHHHHHHHHHHHH----HCCCHHHHHHHHHHHHHcC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3444677888888884 4689999999999999754 556789999999999999999999999999765
Q ss_pred hhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCccccccccc
Q 013867 138 KNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEG 217 (435)
Q Consensus 138 ~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~ 217 (435)
..... .++.+++..+..+|++ ++| +....+++. ...
T Consensus 128 ~P~~~----~a~~~lg~~l~~~g~~----------------------~eA--~~~~~~al~-----~~P----------- 163 (296)
T PRK11189 128 DPTYN----YAYLNRGIALYYGGRY----------------------ELA--QDDLLAFYQ-----DDP----------- 163 (296)
T ss_pred CCCCH----HHHHHHHHHHHHCCCH----------------------HHH--HHHHHHHHH-----hCC-----------
Confidence 43321 1223333333333333 322 222223222 111
Q ss_pred chhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 013867 218 CTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEIL 297 (435)
Q Consensus 218 ~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~ 297 (435)
..+.. .-+..++...+++++|...|++++... +++. ..++.++...|++++++ .+
T Consensus 164 ~~~~~-~~~~~l~~~~~~~~~A~~~l~~~~~~~-------~~~~----------------~~~~~~~~~lg~~~~~~-~~ 218 (296)
T PRK11189 164 NDPYR-ALWLYLAESKLDPKQAKENLKQRYEKL-------DKEQ----------------WGWNIVEFYLGKISEET-LM 218 (296)
T ss_pred CCHHH-HHHHHHHHccCCHHHHHHHHHHHHhhC-------Cccc----------------cHHHHHHHHccCCCHHH-HH
Confidence 11111 111223456789999999998876441 1111 12455666688887753 44
Q ss_pred HHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 298 TRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 298 ~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
+++++-.+... .-.|+...++.+||.+|..+|++++| +..|++|+++-
T Consensus 219 ~~~~~~~~~~~-~l~~~~~ea~~~Lg~~~~~~g~~~~A------~~~~~~Al~~~ 266 (296)
T PRK11189 219 ERLKAGATDNT-ELAERLCETYFYLAKYYLSLGDLDEA------AALFKLALANN 266 (296)
T ss_pred HHHHhcCCCcH-HHHHHHHHHHHHHHHHHHHCCCHHHH------HHHHHHHHHhC
Confidence 55443221100 01245667899999999999998877 89999999776
No 34
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.15 E-value=3.9e-10 Score=102.66 Aligned_cols=118 Identities=14% Similarity=0.145 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013867 221 SAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRT 300 (435)
Q Consensus 221 ~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rA 300 (435)
.....+|.++..+|+|++|+.+|++|+++. . +++. ...+++|||.+|..+|++++|+.+|++|
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~---~---~~~~-----------~~~~~~~lg~~~~~~g~~~eA~~~~~~A 98 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLE---I---DPYD-----------RSYILYNIGLIHTSNGEHTKALEYYFQA 98 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc---c---cchh-----------hHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455667888999999999999999999992 1 1111 2246889999999999999999999999
Q ss_pred HHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhc-CCCCCCCch
Q 013867 301 LTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLK-APPLESEGV 362 (435)
Q Consensus 301 L~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k-~~~~~hp~~ 362 (435)
+.+.. ..+..|+.++.++.++|.++..+|++++| ...|.+++.+++ +++.+++.+
T Consensus 99 l~~~~-~~~~~~~~la~i~~~~~~~~~~~g~~~~A------~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 99 LERNP-FLPQALNNMAVICHYRGEQAIEQGDSEIA------EAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHhCc-CcHHHHHHHHHHHHHhhHHHHHcccHHHH------HHHHHHHHHHHHHHHHhCcccH
Confidence 98822 12222333444444444444477776655 888999999985 567777654
No 35
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.13 E-value=6.5e-09 Score=98.82 Aligned_cols=178 Identities=15% Similarity=0.098 Sum_probs=132.1
Q ss_pred CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCC
Q 013867 102 LAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKP 181 (435)
Q Consensus 102 ~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~ 181 (435)
+..+..+..+.++|..|...|+|++|+..|++++.+ .|+..
T Consensus 27 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~----------------------~p~~~----------------- 67 (235)
T TIGR03302 27 PVEEWPAEELYEEAKEALDSGDYTEAIKYFEALESR----------------------YPFSP----------------- 67 (235)
T ss_pred CcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------------CCCch-----------------
Confidence 445677888999999999999999999988876321 22210
Q ss_pred CchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCC
Q 013867 182 ENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNT 261 (435)
Q Consensus 182 ~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~ 261 (435)
. ...+...+|.+|..+|+|++|+..|++++++. ++++.
T Consensus 68 --------~----------------------------~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~------p~~~~ 105 (235)
T TIGR03302 68 --------Y----------------------------AEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH------PNHPD 105 (235)
T ss_pred --------h----------------------------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC------cCCCc
Confidence 0 00122334667788999999999999999882 11111
Q ss_pred cccccccchHHHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHHHHHhhCCCChhHHHHH--------------
Q 013867 262 LGSCNMALEEVALAATFALGQLEAHM--------GNFGDAEEILTRTLTKTEELFGSHHPKVGVVL-------------- 319 (435)
Q Consensus 262 l~~~~~~~~~~~l~~l~nLa~ly~~q--------G~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L-------------- 319 (435)
...++..+|.+|..+ |++++|...|++++.. -|+|+.....+
T Consensus 106 -----------~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~a~~~~~~~~~~~~~~~ 169 (235)
T TIGR03302 106 -----------ADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR-----YPNSEYAPDAKKRMDYLRNRLAGKE 169 (235)
T ss_pred -----------hHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH-----CCCChhHHHHHHHHHHHHHHHHHHH
Confidence 112567888888876 8999999999999865 45555544333
Q ss_pred HHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHHHhhHh
Q 013867 320 TCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQ 386 (435)
Q Consensus 320 ~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~ 386 (435)
.++|.+|..+|++++| ...|+++++.+ |++|.....+.+++.++...|+|++|...+
T Consensus 170 ~~~a~~~~~~g~~~~A------~~~~~~al~~~----p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~ 226 (235)
T TIGR03302 170 LYVARFYLKRGAYVAA------INRFETVVENY----PDTPATEEALARLVEAYLKLGLKDLAQDAA 226 (235)
T ss_pred HHHHHHHHHcCChHHH------HHHHHHHHHHC----CCCcchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3789999999998776 88999998876 445777778889999999999999998865
No 36
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.10 E-value=6.8e-10 Score=113.37 Aligned_cols=281 Identities=18% Similarity=0.099 Sum_probs=189.5
Q ss_pred HHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhh
Q 013867 61 VVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNS 140 (435)
Q Consensus 61 vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~ 140 (435)
+...+..++-.| |+ .++|.+|+++...-|....- + .+..--|.+.-|||+++.-.|.|+||+-+.+|-+++.+.
T Consensus 54 LSAIYsQLGNAy--fy--L~DY~kAl~yH~hDltlar~-l-gdklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~are 127 (639)
T KOG1130|consen 54 LSAIYSQLGNAY--FY--LKDYEKALKYHTHDLTLARL-L-GDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARE 127 (639)
T ss_pred HHHHHHHhcchh--hh--HhhHHHHHhhhhhhHHHHHH-h-cchhccccccccccchhhhhcccchHHHHHHHHhHHHHH
Confidence 445667777777 55 57899999998877654432 2 233456778889999999999999999999998887754
Q ss_pred hHHHHHH---HHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCch-hch-----hhHHHHHHHHHHHHHHhcCCCccc
Q 013867 141 ILGVRVA---AMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENY-KTY-----GAVNSRANAVKGLVELAHGNLESG 211 (435)
Q Consensus 141 ~L~i~va---ale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~-~ea-----eal~~~a~Ai~~~~~~lgg~h~~a 211 (435)
||-+|. ++=||+.+|...|...- ..-++ ..+ .+ +|. .+...+...+ .+.+.+|.+.
T Consensus 128 -LgDrv~e~RAlYNlgnvYhakGk~~g-~~~pe-------e~g--~f~~ev~~al~~Av~fy~eNL-~l~~~lgDr~--- 192 (639)
T KOG1130|consen 128 -LGDRVLESRALYNLGNVYHAKGKCTG-LEAPE-------EKG--AFNAEVTSALENAVKFYMENL-ELSEKLGDRL--- 192 (639)
T ss_pred -HhHHHhhhHHHhhhhhhhhhcccccC-CCChh-------hcc--cccHHHHHHHHHHHHHHHHHH-HHHHHhhhHH---
Confidence 566544 56677777866664311 00000 001 11 111 1122222222 2344455432
Q ss_pred ccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHH
Q 013867 212 LQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFG 291 (435)
Q Consensus 212 ~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~ 291 (435)
..|.+.-|+|..|+..|+|+.|+.+.+.-|.|..+ |++. ++ .-.+..|||+.|.-.|+|+
T Consensus 193 ------aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~e---fGDr---Aa--------eRRA~sNlgN~hiflg~fe 252 (639)
T KOG1130|consen 193 ------AQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQE---FGDR---AA--------ERRAHSNLGNCHIFLGNFE 252 (639)
T ss_pred ------hhcchhcccCceeeeeccHHHHHHHHHHHHHHHHH---hhhH---HH--------HHHhhcccchhhhhhcccH
Confidence 23445556778889999999999999999999543 2222 11 1246679999999999999
Q ss_pred HHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHH
Q 013867 292 DAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDI 371 (435)
Q Consensus 292 eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~ 371 (435)
.|.++|+++|....+. |. --.-|.+...||..|.--..+++| +..++|=|+|...++..-- -+..-.-++.
T Consensus 253 ~A~ehYK~tl~LAiel-g~-r~vEAQscYSLgNtytll~e~~kA------I~Yh~rHLaIAqeL~DriG-e~RacwSLgn 323 (639)
T KOG1130|consen 253 LAIEHYKLTLNLAIEL-GN-RTVEAQSCYSLGNTYTLLKEVQKA------ITYHQRHLAIAQELEDRIG-ELRACWSLGN 323 (639)
T ss_pred hHHHHHHHHHHHHHHh-cc-hhHHHHHHHHhhhHHHHHHHHHHH------HHHHHHHHHHHHHHHHhhh-hHHHHHHHHH
Confidence 9999999999988764 33 334588889999999988887766 8999999999865432211 2344455777
Q ss_pred HHHHhcCHHHHhhHhhhhhh
Q 013867 372 VALARGGYAEALSVQQNRKD 391 (435)
Q Consensus 372 ~~~a~G~yaeal~~~~~r~~ 391 (435)
.+-+.|....|+..-+....
T Consensus 324 a~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 324 AFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHhhhhHHHHHHHHHHHHH
Confidence 88888888888877644333
No 37
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=99.09 E-value=1.3e-10 Score=81.04 Aligned_cols=41 Identities=29% Similarity=0.443 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChh
Q 013867 274 LAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPK 314 (435)
Q Consensus 274 l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~ 314 (435)
+.+++|||.+|..+|+|++|++++++++.|++++||++||+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd 42 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHPD 42 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence 46789999999999999999999999999999999999996
No 38
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.06 E-value=2.6e-08 Score=99.28 Aligned_cols=222 Identities=14% Similarity=-0.013 Sum_probs=137.6
Q ss_pred hcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhc
Q 013867 80 ESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQL 159 (435)
Q Consensus 80 G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~ 159 (435)
+..+.++.-+.+.|.... -+.+..+..++++|.+|...|++++|+..|++++++.... ..++.+++..+..+
T Consensus 40 ~~~e~~i~~~~~~l~~~~----~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~----~~a~~~lg~~~~~~ 111 (296)
T PRK11189 40 LQQEVILARLNQILASRD----LTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDM----ADAYNYLGIYLTQA 111 (296)
T ss_pred hHHHHHHHHHHHHHcccc----CCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHC
Confidence 456788888888885432 2234568899999999999999999999999997654332 11223333333333
Q ss_pred CCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchHHH
Q 013867 160 GQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLLA 239 (435)
Q Consensus 160 g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eA 239 (435)
|+ |++|.. .+.+++.. . |....+..++|.++..+|+|++|
T Consensus 112 g~----------------------~~~A~~--~~~~Al~l-----~-----------P~~~~a~~~lg~~l~~~g~~~eA 151 (296)
T PRK11189 112 GN----------------------FDAAYE--AFDSVLEL-----D-----------PTYNYAYLNRGIALYYGGRYELA 151 (296)
T ss_pred CC----------------------HHHHHH--HHHHHHHh-----C-----------CCCHHHHHHHHHHHHHCCCHHHH
Confidence 32 443333 23333331 1 44456778889999999999999
Q ss_pred HHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHH
Q 013867 240 KKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVL 319 (435)
Q Consensus 240 e~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L 319 (435)
+..|++++++. |+++. .. -...++...+++++|...|.+++... .|+.
T Consensus 152 ~~~~~~al~~~------------------P~~~~-~~--~~~~l~~~~~~~~~A~~~l~~~~~~~-------~~~~---- 199 (296)
T PRK11189 152 QDDLLAFYQDD------------------PNDPY-RA--LWLYLAESKLDPKQAKENLKQRYEKL-------DKEQ---- 199 (296)
T ss_pred HHHHHHHHHhC------------------CCCHH-HH--HHHHHHHccCCHHHHHHHHHHHHhhC-------Cccc----
Confidence 99999999871 11111 11 11224556789999999998866321 2221
Q ss_pred HHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHHHhhHhhh
Q 013867 320 TCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQQN 388 (435)
Q Consensus 320 ~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~~~ 388 (435)
..++.++...|+..++ ..++++++-.+....-.|.......|++.++..+|+|++|+..+.+
T Consensus 200 ~~~~~~~~~lg~~~~~-------~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~ 261 (296)
T PRK11189 200 WGWNIVEFYLGKISEE-------TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKL 261 (296)
T ss_pred cHHHHHHHHccCCCHH-------HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 1134555556665432 2344444433211101133445677999999999999999998844
No 39
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.05 E-value=2.1e-09 Score=114.88 Aligned_cols=240 Identities=12% Similarity=0.041 Sum_probs=161.8
Q ss_pred ChHHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCC--------------------------CCcchHHHHH
Q 013867 58 SNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQ--------------------------LAESWRGISL 111 (435)
Q Consensus 58 ~~~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG--------------------------~~Hp~~A~~l 111 (435)
|+++---+.++|..| |. .+.|++|+.+|+..-.+..-.+. ...|.--.+.
T Consensus 349 ~~nt~wvl~q~Gray--FE--l~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesW 424 (638)
T KOG1126|consen 349 HYNTGWVLSQLGRAY--FE--LIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESW 424 (638)
T ss_pred cCCchHHHHHHHHHH--HH--HHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHH
Confidence 344444456677776 64 78999999999987666544322 1223333344
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHH
Q 013867 112 LAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVN 191 (435)
Q Consensus 112 ~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~ 191 (435)
=.+|+.|.-|++++.|+.+|+||+.+.++--- .=| |.| |+... . ..|+ .+..
T Consensus 425 ca~GNcfSLQkdh~~Aik~f~RAiQldp~faY--ayT---LlG-----hE~~~-~---------------ee~d--~a~~ 476 (638)
T KOG1126|consen 425 CALGNCFSLQKDHDTAIKCFKRAIQLDPRFAY--AYT---LLG-----HESIA-T---------------EEFD--KAMK 476 (638)
T ss_pred HHhcchhhhhhHHHHHHHHHHHhhccCCccch--hhh---hcC-----Chhhh-h---------------HHHH--hHHH
Confidence 46788899999999999999999776542210 001 112 22211 0 0133 2233
Q ss_pred HHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchH
Q 013867 192 SRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEE 271 (435)
Q Consensus 192 ~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~ 271 (435)
.+.+|++. .|.+.++...+|.+|.+|++|+.|+-.|++|++| . |.
T Consensus 477 ~fr~Al~~----------------~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I---------N---------P~- 521 (638)
T KOG1126|consen 477 SFRKALGV----------------DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEI---------N---------PS- 521 (638)
T ss_pred HHHhhhcC----------------CchhhHHHHhhhhheeccchhhHHHHHHHhhhcC---------C---------cc-
Confidence 45555542 1556789999999999999999999999999999 1 11
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHH
Q 013867 272 VALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEF 351 (435)
Q Consensus 272 ~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I 351 (435)
....++-+|..|...|+.|+|..+|++|+.+- |.---+..+.|.++...++|++| ...++..-++
T Consensus 522 -nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld--------~kn~l~~~~~~~il~~~~~~~ea------l~~LEeLk~~ 586 (638)
T KOG1126|consen 522 -NSVILCHIGRIQHQLKRKDKALQLYEKAIHLD--------PKNPLCKYHRASILFSLGRYVEA------LQELEELKEL 586 (638)
T ss_pred -chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC--------CCCchhHHHHHHHHHhhcchHHH------HHHHHHHHHh
Confidence 23467899999999999999999999999763 33334667889999999998776 3444333333
Q ss_pred hcCCCCCCCchhhhhccHHHHHHHhcCHHHHhhHh
Q 013867 352 LKAPPLESEGVETKVDRTDIVALARGGYAEALSVQ 386 (435)
Q Consensus 352 ~k~~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~ 386 (435)
. |+-+....-++-+|...|++.-|+.-+
T Consensus 587 ----v---P~es~v~~llgki~k~~~~~~~Al~~f 614 (638)
T KOG1126|consen 587 ----V---PQESSVFALLGKIYKRLGNTDLALLHF 614 (638)
T ss_pred ----C---cchHHHHHHHHHHHHHHccchHHHHhh
Confidence 2 444545666888999888888776544
No 40
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.03 E-value=2.8e-09 Score=108.93 Aligned_cols=256 Identities=14% Similarity=0.092 Sum_probs=165.3
Q ss_pred hhcHHHHHHHHHHHHhccCcCCCCCcchHHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHH---HHHHHHHHH
Q 013867 79 DESYSQGMLVLEQCLSTQPSDGQLAESWRGIS-LLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVR---VAAMEALAG 154 (435)
Q Consensus 79 ~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~-l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~---vaale~L~g 154 (435)
+|+|...+.+|+.++. .|.++.+|... |..||+.|.-.++|++|+++..--+.+... +|-+ ..+.+||+.
T Consensus 30 ~gdcraGv~ff~aA~q-----vGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~-lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 30 MGDCRAGVDFFKAALQ-----VGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARL-LGDKLGEAKSSGNLGN 103 (639)
T ss_pred ccchhhhHHHHHHHHH-----hcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHH-hcchhccccccccccc
Confidence 6899999999999995 45555566554 889999999999999999988766544322 2221 112233333
Q ss_pred HHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhh
Q 013867 155 LYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATR 234 (435)
Q Consensus 155 ~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G 234 (435)
...-+|.+++|..-..+-+.+. +.+|.+.- -+.+..|+|.+|+..|
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~a-------------------------reLgDrv~---------e~RAlYNlgnvYhakG 149 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFA-------------------------RELGDRVL---------ESRALYNLGNVYHAKG 149 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHH-------------------------HHHhHHHh---------hhHHHhhhhhhhhhcc
Confidence 3333444444433322222222 22333211 1245566666776655
Q ss_pred c--------------------hHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHH
Q 013867 235 N--------------------FLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAE 294 (435)
Q Consensus 235 ~--------------------y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe 294 (435)
+ ++.|..+|+.-|++.++ .+ +.-..| .+..|||+.|+-.|+|+.|.
T Consensus 150 k~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~-lg--Dr~aqG-----------Ra~GnLGNTyYlLGdf~~ai 215 (639)
T KOG1130|consen 150 KCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEK-LG--DRLAQG-----------RAYGNLGNTYYLLGDFDQAI 215 (639)
T ss_pred cccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHH-hh--hHHhhc-----------chhcccCceeeeeccHHHHH
Confidence 4 45667777777777543 21 111111 36789999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHH
Q 013867 295 EILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVAL 374 (435)
Q Consensus 295 ~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~ 374 (435)
...++=|.|..+ ||+. ..--.+..|||..|.-.|.++.| ...|++++.+...+|..... +.+-.-++..|.
T Consensus 216 ~~H~~RL~ia~e-fGDr-AaeRRA~sNlgN~hiflg~fe~A------~ehYK~tl~LAielg~r~vE-AQscYSLgNtyt 286 (639)
T KOG1130|consen 216 HFHKLRLEIAQE-FGDR-AAERRAHSNLGNCHIFLGNFELA------IEHYKLTLNLAIELGNRTVE-AQSCYSLGNTYT 286 (639)
T ss_pred HHHHHHHHHHHH-hhhH-HHHHHhhcccchhhhhhcccHhH------HHHHHHHHHHHHHhcchhHH-HHHHHHhhhHHH
Confidence 999999999876 5643 33456789999999999998877 78999999887655544433 333344566666
Q ss_pred HhcCHHHHhhHhhhhhhHHHHHH
Q 013867 375 ARGGYAEALSVQQNRKDEGERMK 397 (435)
Q Consensus 375 a~G~yaeal~~~~~r~~eae~~~ 397 (435)
---+|..|+..+.+-...|..+.
T Consensus 287 ll~e~~kAI~Yh~rHLaIAqeL~ 309 (639)
T KOG1130|consen 287 LLKEVQKAITYHQRHLAIAQELE 309 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55678888776655555554443
No 41
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.03 E-value=2.1e-08 Score=99.40 Aligned_cols=197 Identities=13% Similarity=0.070 Sum_probs=127.3
Q ss_pred CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCC
Q 013867 102 LAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKP 181 (435)
Q Consensus 102 ~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~ 181 (435)
++..+.+..+..-|+.|...|+|++|.+.|.++-++..+. +....+...+..+..++.+..
T Consensus 29 ~~~e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~------------------~~~~~Aa~~~~~Aa~~~k~~~- 89 (282)
T PF14938_consen 29 PDYEEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKL------------------GDKFEAAKAYEEAANCYKKGD- 89 (282)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHT------------------T-HHHHHHHHHHHHHHHHHTT-
T ss_pred CCHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHc------------------CCHHHHHHHHHHHHHHHHhhC-
Confidence 3666778888889999999999999999999997665442 222222233344555554432
Q ss_pred CchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHh-hchHHHHHHHHHHHHHHHHhcccCCCC
Q 013867 182 ENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHAT-RNFLLAKKFYQKVIEVLAEQKDFSDMN 260 (435)
Q Consensus 182 ~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~-G~y~eAe~ly~rAL~I~~~~~~~~~~~ 260 (435)
+. +++....+|+... .-.|++.. -+.....+|.+|..+ |++++|.++|++|+++++... .
T Consensus 90 --~~--~Ai~~~~~A~~~y--~~~G~~~~--------aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~----~- 150 (282)
T PF14938_consen 90 --PD--EAIECYEKAIEIY--REAGRFSQ--------AAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG----S- 150 (282)
T ss_dssp --HH--HHHHHHHHHHHHH--HHCT-HHH--------HHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT------
T ss_pred --HH--HHHHHHHHHHHHH--HhcCcHHH--------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC----C-
Confidence 33 3444555666542 34454322 234566789999999 999999999999999986422 1
Q ss_pred CcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHH
Q 013867 261 TLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLI 340 (435)
Q Consensus 261 ~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~ 340 (435)
. +....++.++|.++...|+|++|..+|++........-.. .+.+-..+.+...++-.+|++..|
T Consensus 151 ~---------~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~-~~~~~~~~l~a~l~~L~~~D~v~A----- 215 (282)
T PF14938_consen 151 P---------HSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLL-KYSAKEYFLKAILCHLAMGDYVAA----- 215 (282)
T ss_dssp H---------HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTT-GHHHHHHHHHHHHHHHHTT-HHHH-----
T ss_pred h---------hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhccccc-chhHHHHHHHHHHHHHHcCCHHHH-----
Confidence 1 1123567899999999999999999999987654222222 235667778888899999986544
Q ss_pred HHHHHHHHHHHh
Q 013867 341 QEGLYRRALEFL 352 (435)
Q Consensus 341 Ae~Ly~rAL~I~ 352 (435)
...+++...+.
T Consensus 216 -~~~~~~~~~~~ 226 (282)
T PF14938_consen 216 -RKALERYCSQD 226 (282)
T ss_dssp -HHHHHHHGTTS
T ss_pred -HHHHHHHHhhC
Confidence 55555544443
No 42
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.02 E-value=1.7e-08 Score=111.71 Aligned_cols=187 Identities=13% Similarity=0.030 Sum_probs=130.6
Q ss_pred HHHHHHHHHHcCCHHHH-HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhh
Q 013867 111 LLAMSTLLYESGNYVEA-IEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGA 189 (435)
Q Consensus 111 l~nLa~ly~~qGky~eA-~~l~~ral~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaea 189 (435)
+..+-.+..+-|+-+|| .++++|+.++.+++-.+...+ ++|..+......|..-....-.++.+....+. |+|++.
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~--~~ea~~ 107 (694)
T PRK15179 31 LDLLEAALAEPGESEEAGRELLQQARQVLERHAAVHKPA-AALPELLDYVRRYPHTELFQVLVARALEAAHR--SDEGLA 107 (694)
T ss_pred HhHHHHHhcCcccchhHHHHHHHHHHHHHHHhhhhcchH-hhHHHHHHHHHhccccHHHHHHHHHHHHHcCC--cHHHHH
Confidence 33455567778888877 567778877777664443221 12221111111121111223344555555553 666666
Q ss_pred HHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccc
Q 013867 190 VNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMAL 269 (435)
Q Consensus 190 l~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~ 269 (435)
+..++..+ .|.+..+..+++.++..++++++|...++|+|++- |
T Consensus 108 ~l~~~~~~------------------~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~------------------p 151 (694)
T PRK15179 108 VWRGIHQR------------------FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG------------------S 151 (694)
T ss_pred HHHHHHhh------------------CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC------------------C
Confidence 54444322 25666788889999999999999999999999881 1
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHH
Q 013867 270 EEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRAL 349 (435)
Q Consensus 270 ~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL 349 (435)
+ +...++.+|.++..+|+|+||+.+|+++++ .||+-+.++.++|.++...|+.++| ...|++|+
T Consensus 152 ~--~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~--------~~p~~~~~~~~~a~~l~~~G~~~~A------~~~~~~a~ 215 (694)
T PRK15179 152 S--SAREILLEAKSWDEIGQSEQADACFERLSR--------QHPEFENGYVGWAQSLTRRGALWRA------RDVLQAGL 215 (694)
T ss_pred C--CHHHHHHHHHHHHHhcchHHHHHHHHHHHh--------cCCCcHHHHHHHHHHHHHcCCHHHH------HHHHHHHH
Confidence 1 235688999999999999999999999986 6888899999999999999998877 89999999
Q ss_pred HHh
Q 013867 350 EFL 352 (435)
Q Consensus 350 ~I~ 352 (435)
+..
T Consensus 216 ~~~ 218 (694)
T PRK15179 216 DAI 218 (694)
T ss_pred Hhh
Confidence 887
No 43
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.99 E-value=1.4e-07 Score=104.60 Aligned_cols=274 Identities=17% Similarity=0.196 Sum_probs=162.8
Q ss_pred CCCChHHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013867 55 GLNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKV 134 (435)
Q Consensus 55 g~~~~~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ra 134 (435)
-|++|.+-.-+.++-. ..|+|..+..+.+.++... ..-+-.+.+++.||..|..+|+|++|..+|.++
T Consensus 266 n~~nP~~l~~LAn~fy-------fK~dy~~v~~la~~ai~~t-----~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s 333 (1018)
T KOG2002|consen 266 NNENPVALNHLANHFY-------FKKDYERVWHLAEHAIKNT-----ENKSIKAESFYQLGRSYHAQGDFEKAFKYYMES 333 (1018)
T ss_pred cCCCcHHHHHHHHHHh-------hcccHHHHHHHHHHHHHhh-----hhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 4556665555444221 3567888888888887655 233567888999999999999999999999999
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhch-----------hhHHHHHHHHHHHHHH
Q 013867 135 ENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTY-----------GAVNSRANAVKGLVEL 203 (435)
Q Consensus 135 l~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~ea-----------eal~~~a~Ai~~~~~~ 203 (435)
+......+- -..-.|+-.|+..|....|. .|.+-+-++.+.+++.- +....+-+++.-+.+.
T Consensus 334 ~k~~~d~~~---l~~~GlgQm~i~~~dle~s~----~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~ 406 (1018)
T KOG2002|consen 334 LKADNDNFV---LPLVGLGQMYIKRGDLEESK----FCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKV 406 (1018)
T ss_pred HccCCCCcc---ccccchhHHHHHhchHHHHH----HHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHH
Confidence 876654410 00001111122223222221 12211222222222111 1111222333222222
Q ss_pred hcCCCcccccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHH
Q 013867 204 AHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQL 283 (435)
Q Consensus 204 lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~l 283 (435)
+--. |....+...++.+|.. ++--.+..+|.+|+.|++.... .+. | -.+||+|.+
T Consensus 407 ~~~~---------~~d~~a~l~laql~e~-~d~~~sL~~~~~A~d~L~~~~~-----~ip-----~-----E~LNNvasl 461 (1018)
T KOG2002|consen 407 LEQT---------PVDSEAWLELAQLLEQ-TDPWASLDAYGNALDILESKGK-----QIP-----P-----EVLNNVASL 461 (1018)
T ss_pred Hhcc---------cccHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHcCC-----CCC-----H-----HHHHhHHHH
Confidence 2111 3344566667766654 5555559999999999864322 222 2 258999999
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhhCCCC-hhH-HHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCc
Q 013867 284 EAHMGNFGDAEEILTRTLTKTEELFGSHH-PKV-GVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEG 361 (435)
Q Consensus 284 y~~qG~y~eAe~l~~rAL~I~e~~lG~~H-P~v-a~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~ 361 (435)
+...|.+.+|...|.+|+.+....--++- -+| .+...|||.++...++++.| +.+|+..+. .||.
T Consensus 462 hf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A------~e~Yk~Ilk-------ehp~ 528 (1018)
T KOG2002|consen 462 HFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVA------EEMYKSILK-------EHPG 528 (1018)
T ss_pred HHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHH------HHHHHHHHH-------HCch
Confidence 99999999999999999999554433332 122 56789999999999997766 889987554 3565
Q ss_pred hhhhhccHHHHHHHhcCHHHHhhH
Q 013867 362 VETKVDRTDIVALARGGYAEALSV 385 (435)
Q Consensus 362 ~a~~l~nla~~~~a~G~yaeal~~ 385 (435)
.....-.++.+...++...+|...
T Consensus 529 YId~ylRl~~ma~~k~~~~ea~~~ 552 (1018)
T KOG2002|consen 529 YIDAYLRLGCMARDKNNLYEASLL 552 (1018)
T ss_pred hHHHHHHhhHHHHhccCcHHHHHH
Confidence 333333455555666666665443
No 44
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.98 E-value=3.4e-07 Score=95.06 Aligned_cols=245 Identities=11% Similarity=0.045 Sum_probs=157.6
Q ss_pred ChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 013867 78 SDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYL 157 (435)
Q Consensus 78 s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~ 157 (435)
.+|++++|..+|+++.+...+ +.++..+. .+.++..+|+|++|+..+++..+..+++.. ++.-+..+|.
T Consensus 130 ~~g~~~~A~~~l~~A~~~~~~------~~~~~~l~-~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~----al~ll~~~~~ 198 (398)
T PRK10747 130 QRGDEARANQHLERAAELADN------DQLPVEIT-RVRIQLARNENHAARHGVDKLLEVAPRHPE----VLRLAEQAYI 198 (398)
T ss_pred HCCCHHHHHHHHHHHHhcCCc------chHHHHHH-HHHHHHHCCCHHHHHHHHHHHHhcCCCCHH----HHHHHHHHHH
Confidence 368999999999999854422 12333332 389999999999999999999887766643 3445567777
Q ss_pred hcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcc--------cccccccchhHHHHHHHHH
Q 013867 158 QLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLES--------GLQEEEGCTGSAALSYGEY 229 (435)
Q Consensus 158 ~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~--------a~~~~~~~~~~~a~~la~~ 229 (435)
..|+.+.+..+. ..+.+......++...+ +..+...+.....+..+. ..+...+..+.+...++..
T Consensus 199 ~~gdw~~a~~~l----~~l~k~~~~~~~~~~~l--~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~ 272 (398)
T PRK10747 199 RTGAWSSLLDIL----PSMAKAHVGDEEHRAML--EQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEH 272 (398)
T ss_pred HHHhHHHHHHHH----HHHHHcCCCCHHHHHHH--HHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHH
Confidence 888776655433 33333332111112211 111211111111111000 0011234556788889999
Q ss_pred HHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHHHHHh
Q 013867 230 LHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEA--HMGNFGDAEEILTRTLTKTEEL 307 (435)
Q Consensus 230 ~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~--~qG~y~eAe~l~~rAL~I~e~~ 307 (435)
+...|++++|+...++++.. . .+ + .+..+|. ..|++++|....++.+
T Consensus 273 l~~~g~~~~A~~~L~~~l~~---~----~~---------~---------~l~~l~~~l~~~~~~~al~~~e~~l------ 321 (398)
T PRK10747 273 LIECDDHDTAQQIILDGLKR---Q----YD---------E---------RLVLLIPRLKTNNPEQLEKVLRQQI------ 321 (398)
T ss_pred HHHCCCHHHHHHHHHHHHhc---C----CC---------H---------HHHHHHhhccCCChHHHHHHHHHHH------
Confidence 99999999999999999864 1 11 1 1122222 3488888887777766
Q ss_pred hCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHHHhhHh
Q 013867 308 FGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQ 386 (435)
Q Consensus 308 lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~ 386 (435)
+.||+-+..+..+|.++..++++++| ...|++++++. |+.. ..-.++.++..+|+-++|...+
T Consensus 322 --k~~P~~~~l~l~lgrl~~~~~~~~~A------~~~le~al~~~-------P~~~-~~~~La~~~~~~g~~~~A~~~~ 384 (398)
T PRK10747 322 --KQHGDTPLLWSTLGQLLMKHGEWQEA------SLAFRAALKQR-------PDAY-DYAWLADALDRLHKPEEAAAMR 384 (398)
T ss_pred --hhCCCCHHHHHHHHHHHHHCCCHHHH------HHHHHHHHhcC-------CCHH-HHHHHHHHHHHcCCHHHHHHHH
Confidence 57888889999999999999998776 78899998874 4422 2224788888888888887666
No 45
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.98 E-value=9e-08 Score=96.00 Aligned_cols=210 Identities=11% Similarity=0.016 Sum_probs=126.6
Q ss_pred hHHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 013867 59 NPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFK 138 (435)
Q Consensus 59 ~~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~ 138 (435)
|+-+.....+|..+. ..|++.+|...|.+........ ++........+.++..+|++++|++.+++++...
T Consensus 3 p~~~~a~~~~a~~~~----~~~~~~~~~~~~~~~~~~~~~~-----~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~ 73 (355)
T cd05804 3 PDFALGHAAAALLLL----LGGERPAAAAKAAAAAQALAAR-----ATERERAHVEALSAWIAGDLPKALALLEQLLDDY 73 (355)
T ss_pred CccHHHHHHHHHHHH----hcCCcchHHHHHHHHHHHhccC-----CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 445556666676652 2568889999999988777543 2344445567889999999999999999986543
Q ss_pred hhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccc
Q 013867 139 NSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGC 218 (435)
Q Consensus 139 e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~ 218 (435)
|.+. ..+.. ...+..... +.+. .....+++. ...+.+ +.
T Consensus 74 ----------------------P~~~-~a~~~-~~~~~~~~~---~~~~--~~~~~~~l~----~~~~~~--------~~ 112 (355)
T cd05804 74 ----------------------PRDL-LALKL-HLGAFGLGD---FSGM--RDHVARVLP----LWAPEN--------PD 112 (355)
T ss_pred ----------------------CCcH-HHHHH-hHHHHHhcc---cccC--chhHHHHHh----ccCcCC--------CC
Confidence 2211 00000 111111110 0000 001111111 122222 33
Q ss_pred hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013867 219 TGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILT 298 (435)
Q Consensus 219 ~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~ 298 (435)
.......++.++..+|+|++|+..|++++++. .. . ......||.+|..+|++++|+.+|+
T Consensus 113 ~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~---p~-----~------------~~~~~~la~i~~~~g~~~eA~~~l~ 172 (355)
T cd05804 113 YWYLLGMLAFGLEEAGQYDRAEEAARRALELN---PD-----D------------AWAVHAVAHVLEMQGRFKEGIAFME 172 (355)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CC-----C------------cHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34455566777888888888888888888771 10 1 1245678888888888888888888
Q ss_pred HHHHHHHHhhCCCChhH-HHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHH
Q 013867 299 RTLTKTEELFGSHHPKV-GVVLTCLALMFRNKAMQEHSSALLIQEGLYRRAL 349 (435)
Q Consensus 299 rAL~I~e~~lG~~HP~v-a~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL 349 (435)
+++..... +|.. ...+.++|.+|..+|++++| ..+|++++
T Consensus 173 ~~l~~~~~-----~~~~~~~~~~~la~~~~~~G~~~~A------~~~~~~~~ 213 (355)
T cd05804 173 SWRDTWDC-----SSMLRGHNWWHLALFYLERGDYEAA------LAIYDTHI 213 (355)
T ss_pred hhhhccCC-----CcchhHHHHHHHHHHHHHCCCHHHH------HHHHHHHh
Confidence 88876542 3443 33456788888888887766 56666654
No 46
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.96 E-value=4e-08 Score=97.32 Aligned_cols=167 Identities=16% Similarity=0.101 Sum_probs=111.8
Q ss_pred HHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHH
Q 013867 227 GEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHM-GNFGDAEEILTRTLTKTE 305 (435)
Q Consensus 227 a~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~q-G~y~eAe~l~~rAL~I~e 305 (435)
+.+| .++++++|+.+|++|++++.+ .| .+.. ....+.++|.+|..+ |++++|.++|++|+++++
T Consensus 82 a~~~-k~~~~~~Ai~~~~~A~~~y~~-~G---~~~~----------aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~ 146 (282)
T PF14938_consen 82 ANCY-KKGDPDEAIECYEKAIEIYRE-AG---RFSQ----------AAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYE 146 (282)
T ss_dssp HHHH-HHTTHHHHHHHHHHHHHHHHH-CT----HHH----------HHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHH
T ss_pred HHHH-HhhCHHHHHHHHHHHHHHHHh-cC---cHHH----------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 3444 445999999999999999853 22 1111 123677999999999 999999999999999999
Q ss_pred HhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHHHhhH
Q 013867 306 ELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSV 385 (435)
Q Consensus 306 ~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yaeal~~ 385 (435)
..= ..-....++.++|.++...|+|++| ..+|++........+.....+...+-+..++++..|++-.|...
T Consensus 147 ~e~--~~~~a~~~~~~~A~l~~~l~~y~~A------~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~ 218 (282)
T PF14938_consen 147 QEG--SPHSAAECLLKAADLYARLGRYEEA------IEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKA 218 (282)
T ss_dssp HTT---HHHHHHHHHHHHHHHHHTT-HHHH------HHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HCC--ChhhHHHHHHHHHHHHHHhCCHHHH------HHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 754 3344678889999999999998776 89999988765322222223444445677889999999887665
Q ss_pred hhh---------hhhHHHHHHHHHHHHhcccchhHHHHhc
Q 013867 386 QQN---------RKDEGERMKRWAEAAWRNRRVSLAEALN 416 (435)
Q Consensus 386 ~~~---------r~~eae~~~~~a~~~~~~~r~~l~~~l~ 416 (435)
... .-.|+.-+...-+++-.+.-=.+.+++.
T Consensus 219 ~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~ 258 (282)
T PF14938_consen 219 LERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVA 258 (282)
T ss_dssp HHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCH
T ss_pred HHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 422 2345665656666665544434444443
No 47
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.94 E-value=1e-08 Score=91.84 Aligned_cols=96 Identities=8% Similarity=0.011 Sum_probs=82.7
Q ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013867 223 ALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLT 302 (435)
Q Consensus 223 a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~ 302 (435)
..++|..+..+|+|++|..+|++++.+ . |+ ....++++|.++..+|+|++|+..|++|+.
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~-----------~-------P~--~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMA-----------Q-------PW--SWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc-----------C-------CC--cHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 345688889999999999999999987 1 11 124678999999999999999999999998
Q ss_pred HHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 303 KTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 303 I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
+ .|+-+..+.++|.+|..+|++++| +..|++|+++.
T Consensus 87 l--------~p~~~~a~~~lg~~l~~~g~~~eA------i~~~~~Al~~~ 122 (144)
T PRK15359 87 L--------DASHPEPVYQTGVCLKMMGEPGLA------REAFQTAIKMS 122 (144)
T ss_pred c--------CCCCcHHHHHHHHHHHHcCCHHHH------HHHHHHHHHhC
Confidence 6 577788899999999999998776 89999999876
No 48
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.94 E-value=2.3e-07 Score=96.45 Aligned_cols=242 Identities=13% Similarity=0.108 Sum_probs=139.5
Q ss_pred hhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Q 013867 79 DESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQ 158 (435)
Q Consensus 79 ~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~ 158 (435)
+|++++|..+|+++.+.. +++. + ......+.++.++|+|++|...+++.++..+++.. ++.-++-++.+
T Consensus 131 ~g~~~~A~~~l~~a~~~~-----p~~~-l-~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~----~l~ll~~~~~~ 199 (409)
T TIGR00540 131 RGDEARANQHLEEAAELA-----GNDN-I-LVEIARTRILLAQNELHAARHGVDKLLEMAPRHKE----VLKLAEEAYIR 199 (409)
T ss_pred CCCHHHHHHHHHHHHHhC-----CcCc-h-HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHH
Confidence 567888888888876322 2211 1 11223477777888888888888777665554432 23445556677
Q ss_pred cCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHH------------HHhcCCCcccccccccchhHHHHHH
Q 013867 159 LGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLV------------ELAHGNLESGLQEEEGCTGSAALSY 226 (435)
Q Consensus 159 ~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~------------~~lgg~h~~a~~~~~~~~~~~a~~l 226 (435)
.|+++.+........ +.......+...+ ...+..+++ ...-...|. ..+....+...+
T Consensus 200 ~~d~~~a~~~l~~l~----k~~~~~~~~~~~l--~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~----~~~~~~~l~~~~ 269 (409)
T TIGR00540 200 SGAWQALDDIIDNMA----KAGLFDDEEFADL--EQKAEIGLLDEAMADEGIDGLLNWWKNQPR----HRRHNIALKIAL 269 (409)
T ss_pred HhhHHHHHHHHHHHH----HcCCCCHHHHHHH--HHHHHHHHHHHHHHhcCHHHHHHHHHHCCH----HHhCCHHHHHHH
Confidence 777765554433322 2211111111111 111111101 001111111 112345667778
Q ss_pred HHHHHHhhchHHHHHHHHHHHHHHHHhccc-----CCCCCcccc-------------cccchHHHHHHHHHHHHHHHHcC
Q 013867 227 GEYLHATRNFLLAKKFYQKVIEVLAEQKDF-----SDMNTLGSC-------------NMALEEVALAATFALGQLEAHMG 288 (435)
Q Consensus 227 a~~~~~~G~y~eAe~ly~rAL~I~~~~~~~-----~~~~~l~~~-------------~~~~~~~~l~~l~nLa~ly~~qG 288 (435)
+..+...|++++|+...+++++..-..... ..-..+.++ -..|+.+....+..||.++..+|
T Consensus 270 a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~ 349 (409)
T TIGR00540 270 AEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHG 349 (409)
T ss_pred HHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcc
Confidence 899999999999999999999862111000 000001111 11244333244568999999999
Q ss_pred CHHHHHHHHHH--HHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCC
Q 013867 289 NFGDAEEILTR--TLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPP 356 (435)
Q Consensus 289 ~y~eAe~l~~r--AL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~ 356 (435)
+|++|.++|++ ++++ +|+.-. +..||.++..+|+.++| ..+|+++|...-..+
T Consensus 350 ~~~~A~~~le~a~a~~~--------~p~~~~-~~~La~ll~~~g~~~~A------~~~~~~~l~~~~~~~ 404 (409)
T TIGR00540 350 EFIEAADAFKNVAACKE--------QLDAND-LAMAADAFDQAGDKAEA------AAMRQDSLGLMLAIQ 404 (409)
T ss_pred cHHHHHHHHHHhHHhhc--------CCCHHH-HHHHHHHHHHcCCHHHH------HHHHHHHHHHHhccc
Confidence 99999999995 5544 666655 44999999999998776 899999998875543
No 49
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.93 E-value=9.2e-09 Score=93.63 Aligned_cols=120 Identities=13% Similarity=0.088 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcC
Q 013867 275 AATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKA 354 (435)
Q Consensus 275 ~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~ 354 (435)
.+++++|.++..+|+|++|+..|++|+.+ .++|++++.++.|+|.+|..+|++++| +..|++|+.+..
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l-----~~~~~~~~~~~~~lg~~~~~~g~~~eA------~~~~~~Al~~~~- 103 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRL-----EIDPYDRSYILYNIGLIHTSNGEHTKA------LEYYFQALERNP- 103 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----cccchhhHHHHHHHHHHHHHcCCHHHH------HHHHHHHHHhCc-
Confidence 46789999999999999999999999998 357788899999999999999998876 899999999843
Q ss_pred CCCCCCchhhhhccHHHHHH-------HhcCHHHHhhHhhhhhhHHHHHHHHHHHHhcccchhHHHHhc
Q 013867 355 PPLESEGVETKVDRTDIVAL-------ARGGYAEALSVQQNRKDEGERMKRWAEAAWRNRRVSLAEALN 416 (435)
Q Consensus 355 ~~~~hp~~a~~l~nla~~~~-------a~G~yaeal~~~~~r~~eae~~~~~a~~~~~~~r~~l~~~l~ 416 (435)
......+|++.++. .+|+|.+|+... .+|..+.+.+...+.+.-....+.|.
T Consensus 104 ------~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~----~~a~~~~~~a~~~~p~~~~~~~~~~~ 162 (168)
T CHL00033 104 ------FLPQALNNMAVICHYRGEQAIEQGDSEIAEAWF----DQAAEYWKQAIALAPGNYIEAQNWLK 162 (168)
T ss_pred ------CcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHH----HHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 33344556666666 666666665433 23444545555555544445554444
No 50
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.91 E-value=1.9e-08 Score=92.05 Aligned_cols=119 Identities=18% Similarity=0.244 Sum_probs=91.9
Q ss_pred hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013867 219 TGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILT 298 (435)
Q Consensus 219 ~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~ 298 (435)
......++|.+|..+|+|++|..+|++++.+. .. + ++ ....+.+||.+|..+|+|++|+..|+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---~~---~---------~~--~~~~~~~la~~~~~~g~~~~A~~~~~ 96 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLE---ED---P---------ND--RSYILYNMGIIYASNGEHDKALEYYH 96 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh---hc---c---------ch--HHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34456778889999999999999999999982 11 1 11 12457899999999999999999999
Q ss_pred HHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhh-hhhHHHHHHHHHHHHHhc-CCCCCCCch
Q 013867 299 RTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHS-SALLIQEGLYRRALEFLK-APPLESEGV 362 (435)
Q Consensus 299 rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A-~~~~~Ae~Ly~rAL~I~k-~~~~~hp~~ 362 (435)
+++.+ +|+....+.++|.+|..+|+...+ ..+..|+..|++|+++++ +...++.++
T Consensus 97 ~al~~--------~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~ 154 (172)
T PRK02603 97 QALEL--------NPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNY 154 (172)
T ss_pred HHHHh--------CcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhH
Confidence 99987 677788889999999888875433 235566888999999984 445555543
No 51
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.90 E-value=3.3e-08 Score=109.42 Aligned_cols=131 Identities=11% Similarity=-0.016 Sum_probs=112.1
Q ss_pred cchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 013867 217 GCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEI 296 (435)
Q Consensus 217 ~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l 296 (435)
+....+..++|.+...+|+|++|+.++++++++. |+ ..++..+++.++..+++++||...
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~------------------Pd--~~~a~~~~a~~L~~~~~~eeA~~~ 142 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF------------------PD--SSEAFILMLRGVKRQQGIEAGRAE 142 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC------------------CC--cHHHHHHHHHHHHHhccHHHHHHH
Confidence 3446788889999999999999999999999991 23 236788999999999999999999
Q ss_pred HHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHh
Q 013867 297 LTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALAR 376 (435)
Q Consensus 297 ~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~ 376 (435)
++|+|.+ -|+-+..++++|.++..+|+|++| +.+|+|+++ .+++. ...+-+++.++..+
T Consensus 143 ~~~~l~~--------~p~~~~~~~~~a~~l~~~g~~~~A------~~~y~~~~~----~~p~~---~~~~~~~a~~l~~~ 201 (694)
T PRK15179 143 IELYFSG--------GSSSAREILLEAKSWDEIGQSEQA------DACFERLSR----QHPEF---ENGYVGWAQSLTRR 201 (694)
T ss_pred HHHHhhc--------CCCCHHHHHHHHHHHHHhcchHHH------HHHHHHHHh----cCCCc---HHHHHHHHHHHHHc
Confidence 9999975 688899999999999999998887 899999998 23444 44666789999999
Q ss_pred cCHHHHhhHhhh
Q 013867 377 GGYAEALSVQQN 388 (435)
Q Consensus 377 G~yaeal~~~~~ 388 (435)
|+.++|...++.
T Consensus 202 G~~~~A~~~~~~ 213 (694)
T PRK15179 202 GALWRARDVLQA 213 (694)
T ss_pred CCHHHHHHHHHH
Confidence 999999887744
No 52
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=1.9e-07 Score=96.94 Aligned_cols=217 Identities=14% Similarity=0.146 Sum_probs=155.3
Q ss_pred ChhcHHHHHHHHHHHHhccCcCCCCCcc--hHHH------------------------HHHHHHHHHHHcCCHHHHHHHH
Q 013867 78 SDESYSQGMLVLEQCLSTQPSDGQLAES--WRGI------------------------SLLAMSTLLYESGNYVEAIEKL 131 (435)
Q Consensus 78 s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp--~~A~------------------------~l~nLa~ly~~qGky~eA~~l~ 131 (435)
++-++|+|+.+||..+....-.++.-|. .+.= |+--+|+-|.-+++.++|+..|
T Consensus 274 ~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YF 353 (559)
T KOG1155|consen 274 NQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYF 353 (559)
T ss_pred hhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHH
Confidence 4568999999999998876665553221 1111 1122455677789999999999
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHH-HHHhcCCCcchHHHHHHHHHHHHhcCCCchh--c--------hhhHHHHHHHHHHH
Q 013867 132 QKVENFKNSILGVRVAAMEALAG-LYLQLGQDDTSSVVADKCLQLCEKHKPENYK--T--------YGAVNSRANAVKGL 200 (435)
Q Consensus 132 ~ral~i~e~~L~i~vaale~L~g-~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~--e--------aeal~~~a~Ai~~~ 200 (435)
+||+++.++.++. + .|+| -|++|-...+|...+.+++++.-...+.=|+ + .=+|+.+.+|+.
T Consensus 354 kRALkLNp~~~~a----W-TLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~-- 426 (559)
T KOG1155|consen 354 KRALKLNPKYLSA----W-TLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALE-- 426 (559)
T ss_pred HHHHhcCcchhHH----H-HHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--
Confidence 9999988877653 2 2333 4667766667777776666553221110000 0 012333444332
Q ss_pred HHHhcCCCcccccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHH
Q 013867 201 VELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFAL 280 (435)
Q Consensus 201 ~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nL 280 (435)
+ .|....+...+|.+|.+.++-++|+.+|.||+.. + + +- -.++..|
T Consensus 427 ---~-----------kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~-----~--d--te-----------~~~l~~L 472 (559)
T KOG1155|consen 427 ---L-----------KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILL-----G--D--TE-----------GSALVRL 472 (559)
T ss_pred ---c-----------CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc-----c--c--cc-----------hHHHHHH
Confidence 1 2444567788999999999999999999999977 1 1 11 1468899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhh
Q 013867 281 GQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSS 336 (435)
Q Consensus 281 a~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~ 336 (435)
|.+|...++++||-.+|++.++.. ..-|...|.+-.+.--||.-+...++|++|+
T Consensus 473 akLye~l~d~~eAa~~yek~v~~~-~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As 527 (559)
T KOG1155|consen 473 AKLYEELKDLNEAAQYYEKYVEVS-ELEGEIDDETIKARLFLAEYFKKMKDFDEAS 527 (559)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHH-HhhcccchHHHHHHHHHHHHHHhhcchHHHH
Confidence 999999999999999999999988 7789999999999999999999999999985
No 53
>PLN03218 maturation of RBCL 1; Provisional
Probab=98.87 E-value=6.8e-07 Score=103.25 Aligned_cols=126 Identities=16% Similarity=0.081 Sum_probs=67.1
Q ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013867 223 ALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLT 302 (435)
Q Consensus 223 a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~ 302 (435)
.+.+...|...|++++|..+|.+..+. | + .|+. .+++.|-..|.+.|++++|..+|.+...
T Consensus 617 ynsLI~ay~k~G~~deAl~lf~eM~~~-----G------v-----~PD~---~TynsLI~a~~k~G~~eeA~~l~~eM~k 677 (1060)
T PLN03218 617 YTIAVNSCSQKGDWDFALSIYDDMKKK-----G------V-----KPDE---VFFSALVDVAGHAGDLDKAFEILQDARK 677 (1060)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc-----C------C-----CCCH---HHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 334444556666666666666654432 1 0 0221 2345555666666666666666666543
Q ss_pred HHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHHH
Q 013867 303 KTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEA 382 (435)
Q Consensus 303 I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yaea 382 (435)
. ..+.-..+++.|...|.+.|++++| +.+|++..+. | -.|++. +.|.+-..|...|++++|
T Consensus 678 ~-------G~~pd~~tynsLI~ay~k~G~~eeA------~~lf~eM~~~----g-~~Pdvv-tyN~LI~gy~k~G~~eeA 738 (1060)
T PLN03218 678 Q-------GIKLGTVSYSSLMGACSNAKNWKKA------LELYEDIKSI----K-LRPTVS-TMNALITALCEGNQLPKA 738 (1060)
T ss_pred c-------CCCCCHHHHHHHHHHHHhCCCHHHH------HHHHHHHHHc----C-CCCCHH-HHHHHHHHHHHCCCHHHH
Confidence 1 2222344667777777777776554 5556554322 1 123432 455555566666777777
Q ss_pred hhHh
Q 013867 383 LSVQ 386 (435)
Q Consensus 383 l~~~ 386 (435)
+.++
T Consensus 739 lelf 742 (1060)
T PLN03218 739 LEVL 742 (1060)
T ss_pred HHHH
Confidence 6655
No 54
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=8.5e-08 Score=101.31 Aligned_cols=207 Identities=16% Similarity=0.153 Sum_probs=146.0
Q ss_pred CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCC
Q 013867 102 LAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKP 181 (435)
Q Consensus 102 ~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~ 181 (435)
..+|+.+.+....|.-|...|+|.+|..+|-++-.|..+ +|. -..+ ....+...+
T Consensus 306 ~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~-fgp-----------------aWl~------fghsfa~e~- 360 (611)
T KOG1173|consen 306 DLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPT-FGP-----------------AWLA------FGHSFAGEG- 360 (611)
T ss_pred HhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCcc-ccH-----------------HHHH------HhHHhhhcc-
Confidence 568999999999999999999999999999988544322 111 1000 001111111
Q ss_pred CchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCC
Q 013867 182 ENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNT 261 (435)
Q Consensus 182 ~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~ 261 (435)
..+ +++..+-.|-+ +..|.|- |. +-+|.=|..+++++-|+.+|.+|++|. +..
T Consensus 361 -Ehd--QAmaaY~tAar----l~~G~hl-------P~-----LYlgmey~~t~n~kLAe~Ff~~A~ai~------P~D-- 413 (611)
T KOG1173|consen 361 -EHD--QAMAAYFTAAR----LMPGCHL-------PS-----LYLGMEYMRTNNLKLAEKFFKQALAIA------PSD-- 413 (611)
T ss_pred -hHH--HHHHHHHHHHH----hccCCcc-------hH-----HHHHHHHHHhccHHHHHHHHHHHHhcC------CCc--
Confidence 112 33333444333 3556552 32 224555788999999999999999992 111
Q ss_pred cccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHH
Q 013867 262 LGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQ 341 (435)
Q Consensus 262 l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~A 341 (435)
| -.++-+|.+....+.|.+|..+|+.+| +..+..+++-|....+++|||-+|+.+++|++|
T Consensus 414 ----------p--lv~~Elgvvay~~~~y~~A~~~f~~~l-~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eA------ 474 (611)
T KOG1173|consen 414 ----------P--LVLHELGVVAYTYEEYPEALKYFQKAL-EVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEA------ 474 (611)
T ss_pred ----------c--hhhhhhhheeehHhhhHHHHHHHHHHH-HHhhhccccccchhHHHHhHHHHHHHHhhHHHH------
Confidence 1 136789999999999999999999999 667777888889999999999999999998766
Q ss_pred HHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHHHhhHh
Q 013867 342 EGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQ 386 (435)
Q Consensus 342 e~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~ 386 (435)
...|++||..-- .. +....-+|.+|.-+|+.+.|...+
T Consensus 475 I~~~q~aL~l~~----k~---~~~~asig~iy~llgnld~Aid~f 512 (611)
T KOG1173|consen 475 IDYYQKALLLSP----KD---ASTHASIGYIYHLLGNLDKAIDHF 512 (611)
T ss_pred HHHHHHHHHcCC----Cc---hhHHHHHHHHHHHhcChHHHHHHH
Confidence 899999998762 22 223344678888889888886654
No 55
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.85 E-value=2.7e-07 Score=92.59 Aligned_cols=209 Identities=13% Similarity=0.035 Sum_probs=131.8
Q ss_pred cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCc
Q 013867 104 ESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPEN 183 (435)
Q Consensus 104 Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~ 183 (435)
.|+-+..+..+|.+|...|++++|...+.++.......+.. .+.......... ..+ +
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~e~~~~~a~~~~-~~g--~ 58 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATE--------------------RERAHVEALSAW-IAG--D 58 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCH--------------------HHHHHHHHHHHH-HcC--C
Confidence 58899999999999999999999988888875544322111 011111111111 111 1
Q ss_pred hhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcc
Q 013867 184 YKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLG 263 (435)
Q Consensus 184 ~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~ 263 (435)
++++.. ...+++. .+ |....+... +..+...|++..+.....+++... . ..+
T Consensus 59 ~~~A~~--~~~~~l~--------~~--------P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~---~--~~~---- 110 (355)
T cd05804 59 LPKALA--LLEQLLD--------DY--------PRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLW---A--PEN---- 110 (355)
T ss_pred HHHHHH--HHHHHHH--------HC--------CCcHHHHHH-hHHHHHhcccccCchhHHHHHhcc---C--cCC----
Confidence 332222 2222221 11 212222222 334556666666666666665431 1 111
Q ss_pred cccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHH
Q 013867 264 SCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEG 343 (435)
Q Consensus 264 ~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~ 343 (435)
|+ ....+.++|.++..+|+|++|+..+++++++ .|+-...+..+|.+|..+|++++| +.
T Consensus 111 -----~~--~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--------~p~~~~~~~~la~i~~~~g~~~eA------~~ 169 (355)
T cd05804 111 -----PD--YWYLLGMLAFGLEEAGQYDRAEEAARRALEL--------NPDDAWAVHAVAHVLEMQGRFKEG------IA 169 (355)
T ss_pred -----CC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCcHHHHHHHHHHHHcCCHHHH------HH
Confidence 11 2245678999999999999999999999997 344467789999999999998876 89
Q ss_pred HHHHHHHHhcCCCCCCCchh-hhhccHHHHHHHhcCHHHHhhHhhh
Q 013867 344 LYRRALEFLKAPPLESEGVE-TKVDRTDIVALARGGYAEALSVQQN 388 (435)
Q Consensus 344 Ly~rAL~I~k~~~~~hp~~a-~~l~nla~~~~a~G~yaeal~~~~~ 388 (435)
+++++++.... +|+.. ....+++.++..+|++++|+..+..
T Consensus 170 ~l~~~l~~~~~----~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~ 211 (355)
T cd05804 170 FMESWRDTWDC----SSMLRGHNWWHLALFYLERGDYEAALAIYDT 211 (355)
T ss_pred HHHhhhhccCC----CcchhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999987642 23321 2233688999999999999988754
No 56
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.83 E-value=2.9e-08 Score=86.04 Aligned_cols=102 Identities=11% Similarity=-0.042 Sum_probs=86.2
Q ss_pred cchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 013867 217 GCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEI 296 (435)
Q Consensus 217 ~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l 296 (435)
|....+...++..+..+|+|++|..+|++++.+. + . ......++|.+|..+|+|++|.+.
T Consensus 14 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------p-~-----------~~~~~~~la~~~~~~~~~~~A~~~ 73 (135)
T TIGR02552 14 SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD--------P-Y-----------NSRYWLGLAACCQMLKEYEEAIDA 73 (135)
T ss_pred hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC--------C-C-----------cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677888999999999999999999998871 1 1 114568999999999999999999
Q ss_pred HHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 297 LTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 297 ~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
|++++.+ +|+....+.++|.+|..+|++++| ...|+++++..
T Consensus 74 ~~~~~~~--------~p~~~~~~~~la~~~~~~g~~~~A------~~~~~~al~~~ 115 (135)
T TIGR02552 74 YALAAAL--------DPDDPRPYFHAAECLLALGEPESA------LKALDLAIEIC 115 (135)
T ss_pred HHHHHhc--------CCCChHHHHHHHHHHHHcCCHHHH------HHHHHHHHHhc
Confidence 9999986 477788889999999999998776 88999999876
No 57
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=1.3e-07 Score=100.03 Aligned_cols=214 Identities=14% Similarity=0.114 Sum_probs=149.8
Q ss_pred CCCChHHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013867 55 GLNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKV 134 (435)
Q Consensus 55 g~~~~~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ra 134 (435)
...+|+-|.+-.-.|.=| .+-|+|.+|..+|-+|-.+. |.-+......|..|.-+|+.++|+..|-.|
T Consensus 305 V~~yP~~a~sW~aVg~YY----l~i~k~seARry~SKat~lD--------~~fgpaWl~fghsfa~e~EhdQAmaaY~tA 372 (611)
T KOG1173|consen 305 VDLYPSKALSWFAVGCYY----LMIGKYSEARRYFSKATTLD--------PTFGPAWLAFGHSFAGEGEHDQAMAAYFTA 372 (611)
T ss_pred HHhCCCCCcchhhHHHHH----HHhcCcHHHHHHHHHHhhcC--------ccccHHHHHHhHHhhhcchHHHHHHHHHHH
Confidence 456777777766666554 25689999999999998666 456667778999999999999999999887
Q ss_pred HHhhh-hhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCccccc
Q 013867 135 ENFKN-SILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQ 213 (435)
Q Consensus 135 l~i~e-~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~ 213 (435)
-.+-. .++.. + =++--|+.+|. +.-|+..+..+.+|.
T Consensus 373 arl~~G~hlP~----L-Ylgmey~~t~n----------------------~kLAe~Ff~~A~ai~--------------- 410 (611)
T KOG1173|consen 373 ARLMPGCHLPS----L-YLGMEYMRTNN----------------------LKLAEKFFKQALAIA--------------- 410 (611)
T ss_pred HHhccCCcchH----H-HHHHHHHHhcc----------------------HHHHHHHHHHHHhcC---------------
Confidence 54332 22110 0 00001212221 112233333333332
Q ss_pred ccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHH
Q 013867 214 EEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDA 293 (435)
Q Consensus 214 ~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eA 293 (435)
|..+-+.+-+|.+....+.|.+|+.+|+.+|+..+.... . ..- + -..++|||-+|+++++|++|
T Consensus 411 ---P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~--e--~~~---w------~p~~~NLGH~~Rkl~~~~eA 474 (611)
T KOG1173|consen 411 ---PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLN--E--KIF---W------EPTLNNLGHAYRKLNKYEEA 474 (611)
T ss_pred ---CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccc--c--ccc---h------hHHHHhHHHHHHHHhhHHHH
Confidence 334456677888889999999999999999966543222 1 110 1 12478999999999999999
Q ss_pred HHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 294 EEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 294 e~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
...|++||.. -|.-+.++..+|.+|..+|+.+.| ...|.+||.|.
T Consensus 475 I~~~q~aL~l--------~~k~~~~~asig~iy~llgnld~A------id~fhKaL~l~ 519 (611)
T KOG1173|consen 475 IDYYQKALLL--------SPKDASTHASIGYIYHLLGNLDKA------IDHFHKALALK 519 (611)
T ss_pred HHHHHHHHHc--------CCCchhHHHHHHHHHHHhcChHHH------HHHHHHHHhcC
Confidence 9999999975 567788899999999999998877 77788888765
No 58
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=98.79 E-value=1.4e-06 Score=96.56 Aligned_cols=57 Identities=9% Similarity=0.116 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHH
Q 013867 109 ISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKC 172 (435)
Q Consensus 109 ~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~ 172 (435)
.+++.|-..|.+.|++++|+.+|++.. ...+.+++.+...|...|..+.|..+.+.+
T Consensus 159 ~~~n~Li~~y~k~g~~~~A~~lf~~m~-------~~~~~t~n~li~~~~~~g~~~~A~~lf~~M 215 (697)
T PLN03081 159 YMMNRVLLMHVKCGMLIDARRLFDEMP-------ERNLASWGTIIGGLVDAGNYREAFALFREM 215 (697)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHhcCC-------CCCeeeHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 345555556666666666666665431 112334555555566666666555554443
No 59
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.78 E-value=1.1e-07 Score=93.19 Aligned_cols=207 Identities=18% Similarity=0.187 Sum_probs=73.0
Q ss_pred ChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 013867 78 SDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYL 157 (435)
Q Consensus 78 s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~ 157 (435)
+.+++++|+..|++.+.+. +.....+.++..+ ...|+|++|+++++++..-.... ..+...+..+.
T Consensus 56 ~~~~~~~A~~ay~~l~~~~--------~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~-----~~l~~~l~~~~ 121 (280)
T PF13429_consen 56 SLGDYDEAIEAYEKLLASD--------KANPQDYERLIQL-LQDGDPEEALKLAEKAYERDGDP-----RYLLSALQLYY 121 (280)
T ss_dssp ----------------------------------------------------------------------------H-HH
T ss_pred ccccccccccccccccccc--------ccccccccccccc-ccccccccccccccccccccccc-----chhhHHHHHHH
Confidence 4578999999999998654 2244457778887 79999999999998764322111 01122223333
Q ss_pred hcCCCcchHHHHHH----------------HHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhH
Q 013867 158 QLGQDDTSSVVADK----------------CLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGS 221 (435)
Q Consensus 158 ~~g~~~~A~~~~~~----------------~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~ 221 (435)
..+....+..+... .+.+....+. ++ +++....++++. .|....
T Consensus 122 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~--~~--~A~~~~~~al~~----------------~P~~~~ 181 (280)
T PF13429_consen 122 RLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGD--PD--KALRDYRKALEL----------------DPDDPD 181 (280)
T ss_dssp HTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCH--HH--HHHHHHHHHHHH-----------------TT-HH
T ss_pred HHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCC--HH--HHHHHHHHHHHc----------------CCCCHH
Confidence 33433332222221 2222222221 11 111122222221 355567
Q ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013867 222 AALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTL 301 (435)
Q Consensus 222 ~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL 301 (435)
+..+++.++..+|++++|.++.++..... . ..+. ....+|.+|...|++++|..+|++++
T Consensus 182 ~~~~l~~~li~~~~~~~~~~~l~~~~~~~---~---~~~~--------------~~~~la~~~~~lg~~~~Al~~~~~~~ 241 (280)
T PF13429_consen 182 ARNALAWLLIDMGDYDEAREALKRLLKAA---P---DDPD--------------LWDALAAAYLQLGRYEEALEYLEKAL 241 (280)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHH----H---TSCC--------------HCHHHHHHHHHHT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHHC---c---CHHH--------------HHHHHHHHhccccccccccccccccc
Confidence 78888989999999999888888777662 1 1111 23578999999999999999999988
Q ss_pred HHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 302 TKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 302 ~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
.. +|+=..++.++|.++...|++++| ..++++++.-.
T Consensus 242 ~~--------~p~d~~~~~~~a~~l~~~g~~~~A------~~~~~~~~~~l 278 (280)
T PF13429_consen 242 KL--------NPDDPLWLLAYADALEQAGRKDEA------LRLRRQALRLL 278 (280)
T ss_dssp HH--------STT-HHHHHHHHHHHT-------------------------
T ss_pred cc--------cccccccccccccccccccccccc------ccccccccccc
Confidence 53 666667788999999999998877 88999988754
No 60
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.78 E-value=1.6e-06 Score=86.87 Aligned_cols=226 Identities=17% Similarity=0.170 Sum_probs=146.3
Q ss_pred cHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcC
Q 013867 81 SYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLG 160 (435)
Q Consensus 81 ~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~g 160 (435)
.-|+|+.+|-..+. ..|++-.+...||++|+++|+-|.||.+.+--++--.-...-++-++-.|+-=|+..|
T Consensus 50 Q~dKAvdlF~e~l~--------~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aG 121 (389)
T COG2956 50 QPDKAVDLFLEMLQ--------EDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAG 121 (389)
T ss_pred CcchHHHHHHHHHh--------cCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhh
Confidence 45799999988874 4578889999999999999999999998876432111112223335556666677777
Q ss_pred CCcchHHHHHHHHHHHHhcCCCc---hhchhhHHHHHHHHHH--HHHHhcCCCcccccccccchhHHHHHHHHHHHHhhc
Q 013867 161 QDDTSSVVADKCLQLCEKHKPEN---YKTYGAVNSRANAVKG--LVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRN 235 (435)
Q Consensus 161 ~~~~A~~~~~~~~~l~~~~~~~~---~~eaeal~~~a~Ai~~--~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~ 235 (435)
-++.|+.+...+.+-.+...+.. -..++.-..|.|||.. .+.+++|+--. -.+..-.+-||.-+....+
T Consensus 122 l~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~------~eIAqfyCELAq~~~~~~~ 195 (389)
T COG2956 122 LLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYR------VEIAQFYCELAQQALASSD 195 (389)
T ss_pred hhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccch------hHHHHHHHHHHHHHhhhhh
Confidence 77777766554443111110000 0011222356677754 23345554111 1111112223444445778
Q ss_pred hHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhH
Q 013867 236 FLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKV 315 (435)
Q Consensus 236 y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~v 315 (435)
++.|..+.+||++. .+. . +.+..-||.++..+|+|..|.+.++++++ .||--+
T Consensus 196 ~d~A~~~l~kAlqa---~~~-----c------------vRAsi~lG~v~~~~g~y~~AV~~~e~v~e-------Qn~~yl 248 (389)
T COG2956 196 VDRARELLKKALQA---DKK-----C------------VRASIILGRVELAKGDYQKAVEALERVLE-------QNPEYL 248 (389)
T ss_pred HHHHHHHHHHHHhh---Ccc-----c------------eehhhhhhHHHHhccchHHHHHHHHHHHH-------hChHHH
Confidence 89999999999987 111 1 23445789999999999888777776665 477778
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhc
Q 013867 316 GVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLK 353 (435)
Q Consensus 316 a~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k 353 (435)
..++.-|...|..+|+-++. +...+++.+...
T Consensus 249 ~evl~~L~~~Y~~lg~~~~~------~~fL~~~~~~~~ 280 (389)
T COG2956 249 SEVLEMLYECYAQLGKPAEG------LNFLRRAMETNT 280 (389)
T ss_pred HHHHHHHHHHHHHhCCHHHH------HHHHHHHHHccC
Confidence 99999999999999997765 778888888773
No 61
>PLN03218 maturation of RBCL 1; Provisional
Probab=98.77 E-value=2.3e-06 Score=98.99 Aligned_cols=248 Identities=12% Similarity=0.025 Sum_probs=140.7
Q ss_pred hcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhc
Q 013867 80 ESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQL 159 (435)
Q Consensus 80 G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~ 159 (435)
|++++|..+|++..+.. + .| -..+++.|-..|.+.|++++|.++|++.... -+...+.+++.+...|...
T Consensus 451 g~~e~A~~lf~~M~~~G---l---~p-D~~tynsLI~~y~k~G~vd~A~~vf~eM~~~---Gv~PdvvTynaLI~gy~k~ 520 (1060)
T PLN03218 451 QDIDGALRVLRLVQEAG---L---KA-DCKLYTTLISTCAKSGKVDAMFEVFHEMVNA---GVEANVHTFGALIDGCARA 520 (1060)
T ss_pred cCHHHHHHHHHHHHHcC---C---CC-CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHHC
Confidence 45555666665544321 1 12 2345666677777777777777777665321 1122345666666666666
Q ss_pred CCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCccccccc----------ccchhHHHHHHHHH
Q 013867 160 GQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEE----------EGCTGSAALSYGEY 229 (435)
Q Consensus 160 g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~----------~~~~~~~a~~la~~ 229 (435)
|..+.|..+.+.+... ....+ ...+..-|.... -.|+.+.|...+ .|+ ..+.+.+-..
T Consensus 521 G~~eeAl~lf~~M~~~---Gv~PD------~vTYnsLI~a~~--k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~a 588 (1060)
T PLN03218 521 GQVAKAFGAYGIMRSK---NVKPD------RVVFNALISACG--QSGAVDRAFDVLAEMKAETHPIDPD-HITVGALMKA 588 (1060)
T ss_pred cCHHHHHHHHHHHHHc---CCCCC------HHHHHHHHHHHH--HCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHH
Confidence 6665554443322110 00000 000111111000 001111111000 122 1234445567
Q ss_pred HHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhC
Q 013867 230 LHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFG 309 (435)
Q Consensus 230 ~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG 309 (435)
|...|++++|+.+|++..+. + +- | ...+++.|-..|.+.|++++|..+|.+.... |
T Consensus 589 y~k~G~ldeA~elf~~M~e~-----g------i~-----p---~~~tynsLI~ay~k~G~~deAl~lf~eM~~~-----G 644 (1060)
T PLN03218 589 CANAGQVDRAKEVYQMIHEY-----N------IK-----G---TPEVYTIAVNSCSQKGDWDFALSIYDDMKKK-----G 644 (1060)
T ss_pred HHHCCCHHHHHHHHHHHHHc-----C------CC-----C---ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C
Confidence 88899999999999876543 1 10 1 1245677888899999999999999887643 2
Q ss_pred CCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHHHhhHhh
Q 013867 310 SHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQQ 387 (435)
Q Consensus 310 ~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~~ 387 (435)
-.|+ ..+++.|...|...|++++| ..++++.++.. . .|+ ..+.+.+-.+|...|++++|+.++.
T Consensus 645 -v~PD-~~TynsLI~a~~k~G~~eeA------~~l~~eM~k~G----~-~pd-~~tynsLI~ay~k~G~~eeA~~lf~ 708 (1060)
T PLN03218 645 -VKPD-EVFFSALVDVAGHAGDLDKA------FEILQDARKQG----I-KLG-TVSYSSLMGACSNAKNWKKALELYE 708 (1060)
T ss_pred -CCCC-HHHHHHHHHHHHhCCCHHHH------HHHHHHHHHcC----C-CCC-HHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 3455 56889999999999997766 67777765432 1 133 3366677788889999999988873
No 62
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.76 E-value=4.6e-07 Score=96.07 Aligned_cols=223 Identities=17% Similarity=0.152 Sum_probs=159.4
Q ss_pred hhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Q 013867 79 DESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQ 158 (435)
Q Consensus 79 ~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~ 158 (435)
-|...+|.-.||.+. ...|.-+....-||.+....++=..||.-+++++++...-+ .+|.+|+.-|-.
T Consensus 298 nG~L~~A~LafEAAV--------kqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~Nl----eaLmaLAVSytN 365 (579)
T KOG1125|consen 298 NGDLSEAALAFEAAV--------KQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNL----EALMALAVSYTN 365 (579)
T ss_pred cCCchHHHHHHHHHH--------hhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccH----HHHHHHHHHHhh
Confidence 356889999999998 45688899999999999999999999999999988776554 356777777877
Q ss_pred cCCCcchHHHHHHHHHHHHhcC-------CCchh---chhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHH
Q 013867 159 LGQDDTSSVVADKCLQLCEKHK-------PENYK---TYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGE 228 (435)
Q Consensus 159 ~g~~~~A~~~~~~~~~l~~~~~-------~~~~~---eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~ 228 (435)
.|-...|..+.++.+..--++. +..++ .--.....+..-...++.. -+++. ..-+.+-..||.
T Consensus 366 eg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa-~~~~~------~~DpdvQ~~LGV 438 (579)
T KOG1125|consen 366 EGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAA-RQLPT------KIDPDVQSGLGV 438 (579)
T ss_pred hhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHH-HhCCC------CCChhHHhhhHH
Confidence 7777777766666543321111 00000 0000001111111111111 11111 022356667899
Q ss_pred HHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhh
Q 013867 229 YLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELF 308 (435)
Q Consensus 229 ~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~l 308 (435)
+|+..|+|++|+.+|+.||.. . |..- ...|.||-.+..-.++.||..-|.|||++.
T Consensus 439 Ly~ls~efdraiDcf~~AL~v-----~-------------Pnd~--~lWNRLGAtLAN~~~s~EAIsAY~rALqLq---- 494 (579)
T KOG1125|consen 439 LYNLSGEFDRAVDCFEAALQV-----K-------------PNDY--LLWNRLGATLANGNRSEEAISAYNRALQLQ---- 494 (579)
T ss_pred HHhcchHHHHHHHHHHHHHhc-----C-------------CchH--HHHHHhhHHhcCCcccHHHHHHHHHHHhcC----
Confidence 999999999999999999977 1 1111 235889999999999999999999999984
Q ss_pred CCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcC
Q 013867 309 GSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKA 354 (435)
Q Consensus 309 G~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~ 354 (435)
|....+-.|||..|..+|-|.+| .+.|-.||.+.+.
T Consensus 495 ----P~yVR~RyNlgIS~mNlG~ykEA------~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 495 ----PGYVRVRYNLGISCMNLGAYKEA------VKHLLEALSMQRK 530 (579)
T ss_pred ----CCeeeeehhhhhhhhhhhhHHHH------HHHHHHHHHhhhc
Confidence 88889999999999999997766 8999999999954
No 63
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.75 E-value=8.5e-08 Score=85.86 Aligned_cols=106 Identities=16% Similarity=0.106 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHH
Q 013867 239 AKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVV 318 (435)
Q Consensus 239 Ae~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~ 318 (435)
-+.+|++|+++ . |+ ...++|.++..+|+|++|..+|++++.+ .|+-...
T Consensus 12 ~~~~~~~al~~-----------~-------p~-----~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a 60 (144)
T PRK15359 12 PEDILKQLLSV-----------D-------PE-----TVYASGYASWQEGDYSRAVIDFSWLVMA--------QPWSWRA 60 (144)
T ss_pred HHHHHHHHHHc-----------C-------HH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHH
Confidence 46788999888 1 22 1457899999999999999999999976 5777889
Q ss_pred HHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHHHhhHhhh
Q 013867 319 LTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQQN 388 (435)
Q Consensus 319 L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~~~ 388 (435)
+.++|.++..+|++++| +..|++|+++. |++ ...+.|++.++...|++++|...+..
T Consensus 61 ~~~lg~~~~~~g~~~~A------~~~y~~Al~l~----p~~---~~a~~~lg~~l~~~g~~~eAi~~~~~ 117 (144)
T PRK15359 61 HIALAGTWMMLKEYTTA------INFYGHALMLD----ASH---PEPVYQTGVCLKMMGEPGLAREAFQT 117 (144)
T ss_pred HHHHHHHHHHHhhHHHH------HHHHHHHHhcC----CCC---cHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999998876 89999999864 334 44778999999999999999887733
No 64
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=98.73 E-value=8.7e-07 Score=98.10 Aligned_cols=46 Identities=11% Similarity=-0.008 Sum_probs=36.6
Q ss_pred hhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013867 79 DESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVE 135 (435)
Q Consensus 79 ~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral 135 (435)
.|++++|..+|++... + ...+++.|...|.+.|++++|+++|++..
T Consensus 272 ~g~~~~A~~vf~~m~~----------~-~~vt~n~li~~y~~~g~~~eA~~lf~~M~ 317 (697)
T PLN03081 272 CGDIEDARCVFDGMPE----------K-TTVAWNSMLAGYALHGYSEEALCLYYEMR 317 (697)
T ss_pred CCCHHHHHHHHHhCCC----------C-ChhHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 4789999999986421 1 34578999999999999999999998754
No 65
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.71 E-value=2.2e-07 Score=77.72 Aligned_cols=103 Identities=16% Similarity=0.191 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013867 222 AALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTL 301 (435)
Q Consensus 222 ~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL 301 (435)
+..+.|..+..+|+|++|+..|++++... ++++. ...+...+|.+|...|+|++|..+|++++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~-----------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 66 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKY------PKSTY-----------APNAHYWLGEAYYAQGKYADAAKAFLAVV 66 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC------CCccc-----------cHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 45667888899999999999999998761 11111 11356789999999999999999999999
Q ss_pred HHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 302 TKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 302 ~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
.. .|+||.+..++.++|.+|..+|++++| +..|+++++..
T Consensus 67 ~~-----~p~~~~~~~~~~~~~~~~~~~~~~~~A------~~~~~~~~~~~ 106 (119)
T TIGR02795 67 KK-----YPKSPKAPDALLKLGMSLQELGDKEKA------KATLQQVIKRY 106 (119)
T ss_pred HH-----CCCCCcccHHHHHHHHHHHHhCChHHH------HHHHHHHHHHC
Confidence 75 488998899999999999999998776 88999998875
No 66
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.70 E-value=5.3e-08 Score=97.45 Aligned_cols=219 Identities=14% Similarity=0.078 Sum_probs=133.6
Q ss_pred HHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHH
Q 013867 67 NYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRV 146 (435)
Q Consensus 67 ~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~v 146 (435)
.+|-+|- ..|-|.+|+..++++|+-.+ ||+| +.-|+.+|.+--+-..|...|.+.++...- .|
T Consensus 228 Q~gkCyl----rLgm~r~AekqlqssL~q~~------~~dT---fllLskvY~ridQP~~AL~~~~~gld~fP~----~V 290 (478)
T KOG1129|consen 228 QMGKCYL----RLGMPRRAEKQLQSSLTQFP------HPDT---FLLLSKVYQRIDQPERALLVIGEGLDSFPF----DV 290 (478)
T ss_pred HHHHHHH----HhcChhhhHHHHHHHhhcCC------chhH---HHHHHHHHHHhccHHHHHHHHhhhhhcCCc----hh
Confidence 3444543 46889999999999996553 3332 344555555555555555555555443221 11
Q ss_pred HHHHHHHHHHHhcCCCcchHHHHHHHHHHH-----------HhcCCCchhch--hhHHHHHHHHHHHHHHhcCCCccccc
Q 013867 147 AAMEALAGLYLQLGQDDTSSVVADKCLQLC-----------EKHKPENYKTY--GAVNSRANAVKGLVELAHGNLESGLQ 213 (435)
Q Consensus 147 aale~L~g~~~~~g~~~~A~~~~~~~~~l~-----------~~~~~~~~~ea--eal~~~a~Ai~~~~~~lgg~h~~a~~ 213 (435)
.-+=..+..+..+++.+.|..++...+.+- -.+. |++- -++-.+.. +-.+|-.
T Consensus 291 T~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yf---Y~~~PE~AlryYRR-----iLqmG~~------ 356 (478)
T KOG1129|consen 291 TYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYF---YDNNPEMALRYYRR-----ILQMGAQ------ 356 (478)
T ss_pred hhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccc---cCCChHHHHHHHHH-----HHHhcCC------
Confidence 111111222333444444443333322220 0011 1111 11111111 1123322
Q ss_pred ccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHH
Q 013867 214 EEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDA 293 (435)
Q Consensus 214 ~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eA 293 (435)
.+...+|+|.++.--++||-+.+.|+||+...+. . .. ......|||.+....|++.-|
T Consensus 357 -----speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~-~------~~----------aaDvWYNlg~vaV~iGD~nlA 414 (478)
T KOG1129|consen 357 -----SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQ-P------GQ----------AADVWYNLGFVAVTIGDFNLA 414 (478)
T ss_pred -----ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccC-c------ch----------hhhhhhccceeEEeccchHHH
Confidence 2356778888777789999999999999988431 1 11 124578999999999999999
Q ss_pred HHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 294 EEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 294 e~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
...|+-||. +.|+-+.+|||||.+-.+.|+.++| ..||.-|-..+
T Consensus 415 ~rcfrlaL~--------~d~~h~ealnNLavL~~r~G~i~~A------rsll~~A~s~~ 459 (478)
T KOG1129|consen 415 KRCFRLALT--------SDAQHGEALNNLAVLAARSGDILGA------RSLLNAAKSVM 459 (478)
T ss_pred HHHHHHHhc--------cCcchHHHHHhHHHHHhhcCchHHH------HHHHHHhhhhC
Confidence 999998885 6788899999999999999998776 77888776665
No 67
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.68 E-value=3.7e-07 Score=79.97 Aligned_cols=89 Identities=17% Similarity=0.176 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013867 222 AALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTL 301 (435)
Q Consensus 222 ~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL 301 (435)
+....|.++..+|+.++|+++|++|++. | ..+ + ....++.+||..|..+|++++|+.++++++
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~-----g-----L~~-----~--~~~~a~i~lastlr~LG~~deA~~~L~~~~ 65 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAA-----G-----LSG-----A--DRRRALIQLASTLRNLGRYDEALALLEEAL 65 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-----CCc-----h--HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4566788999999999999999999975 2 111 1 133578899999999999999999999987
Q ss_pred HHHHHhhCCCChh---HHHHHHHHHHHHHHhhhhhhh
Q 013867 302 TKTEELFGSHHPK---VGVVLTCLALMFRNKAMQEHS 335 (435)
Q Consensus 302 ~I~e~~lG~~HP~---va~~L~nLA~ly~~qG~~e~A 335 (435)
. +||+ ....-..+|.++..+|++++|
T Consensus 66 ~--------~~p~~~~~~~l~~f~Al~L~~~gr~~eA 94 (120)
T PF12688_consen 66 E--------EFPDDELNAALRVFLALALYNLGRPKEA 94 (120)
T ss_pred H--------HCCCccccHHHHHHHHHHHHHCCCHHHH
Confidence 4 3344 566667789999999998887
No 68
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.61 E-value=1.2e-06 Score=82.76 Aligned_cols=102 Identities=17% Similarity=0.128 Sum_probs=85.2
Q ss_pred cchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHH-HHHcCC--HHHH
Q 013867 217 GCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQL-EAHMGN--FGDA 293 (435)
Q Consensus 217 ~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~l-y~~qG~--y~eA 293 (435)
|.....-..+|.+|..+|+|++|+..|++|+.+. |+ ....+.++|.+ |...|+ +++|
T Consensus 70 P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~------------------P~--~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 70 PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR------------------GE--NAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------------------CC--CHHHHHHHHHHHHHhcCCCCcHHH
Confidence 4456677888999999999999999999999981 11 12457899986 578888 5999
Q ss_pred HHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 294 EEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 294 e~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
..+|++++.+ +|+-..++.+||..+..+|+|++| +..|++++++.
T Consensus 130 ~~~l~~al~~--------dP~~~~al~~LA~~~~~~g~~~~A------i~~~~~aL~l~ 174 (198)
T PRK10370 130 REMIDKALAL--------DANEVTALMLLASDAFMQADYAQA------IELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHh--------CCCChhHHHHHHHHHHHcCCHHHH------HHHHHHHHhhC
Confidence 9999999985 566667999999999999998876 89999999887
No 69
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.60 E-value=7.5e-07 Score=68.15 Aligned_cols=96 Identities=20% Similarity=0.270 Sum_probs=77.6
Q ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013867 223 ALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLT 302 (435)
Q Consensus 223 a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~ 302 (435)
..++|..+..+|+|++|++++++++.+. . . ...+..++|.+|..+|++++|..+|++++.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~------~-----------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 62 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD---P------D-----------NADAYYNLAAAYYKLGKYEEALEDYEKALE 62 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC---C------c-----------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3457788889999999999999999871 1 0 013567899999999999999999999998
Q ss_pred HHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 303 KTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 303 I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
+ .+.++ .++.++|.+|..+|++++| ...+++++.+.
T Consensus 63 ~-----~~~~~---~~~~~~~~~~~~~~~~~~a------~~~~~~~~~~~ 98 (100)
T cd00189 63 L-----DPDNA---KAYYNLGLAYYKLGKYEEA------LEAYEKALELD 98 (100)
T ss_pred C-----CCcch---hHHHHHHHHHHHHHhHHHH------HHHHHHHHccC
Confidence 5 34444 7889999999999998776 77888887653
No 70
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=98.59 E-value=3.9e-07 Score=103.96 Aligned_cols=240 Identities=14% Similarity=0.094 Sum_probs=169.7
Q ss_pred CccccccccCCC-CcccCCCCCh--HHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHH
Q 013867 38 PPRRLVHDANGN-GNRINGLNSN--PVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAM 114 (435)
Q Consensus 38 ~~~~~~~~~~~~-~~~~~g~~~~--~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nL 114 (435)
.|..-|-.-++. -+++.-+-.| ..|..+-.-+-. .-.+|.+.+|-+ .-+++....+..|.-||+++..|-.|
T Consensus 905 ~~ks~f~~~Di~~~~p~ik~s~P~~~~a~~~~e~gq~----~~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~L 979 (1236)
T KOG1839|consen 905 EPKSEFNDSDILNLRPVIKHSSPTVSEAKDSPEQGQE----ALLEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSL 979 (1236)
T ss_pred CCCCCCCcccccccccccccCCCccchhhhhhhhhhh----hhcccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHH
Confidence 344445555554 3444444455 333333322211 124678888888 77888888888899999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHH
Q 013867 115 STLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRA 194 (435)
Q Consensus 115 a~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a 194 (435)
+.++...|++++|+..-.++.-|.++.+|.. ++. ...
T Consensus 980 a~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~d--------------s~~-t~~---------------------------- 1016 (1236)
T KOG1839|consen 980 AKLSNRLGDNQEAIAQQRKACIISERVLGKD--------------SPN-TKL---------------------------- 1016 (1236)
T ss_pred HHHHhhhcchHHHHHhcccceeeechhccCC--------------CHH-HHH----------------------------
Confidence 9999999999999988888766666555321 111 000
Q ss_pred HHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHH
Q 013867 195 NAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVAL 274 (435)
Q Consensus 195 ~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l 274 (435)
...+++.+.....+-..|...+.||++++ ..- .|+.| |. ++
T Consensus 1017 ---------------------------~y~nlal~~f~~~~~~~al~~~~ra~~l~--~Ls------~ge~h--P~--~a 1057 (1236)
T KOG1839|consen 1017 ---------------------------AYGNLALYEFAVKNLSGALKSLNRALKLK--LLS------SGEDH--PP--TA 1057 (1236)
T ss_pred ---------------------------HhhHHHHHHHhccCccchhhhHHHHHHhh--ccc------cCCCC--Cc--hh
Confidence 00011222334445666777788888884 222 22111 11 22
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhc-
Q 013867 275 AATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLK- 353 (435)
Q Consensus 275 ~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k- 353 (435)
.+.+|++.++...++++.|..+.+.|+++.++++|+++-.++.+..-+|.++..++++..| ...++-...|++
T Consensus 1058 ~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~a------l~~ek~t~~iy~~ 1131 (1236)
T KOG1839|consen 1058 LSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNA------LEHEKVTYGIYKE 1131 (1236)
T ss_pred hhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHH------HHHHhhHHHHHHH
Confidence 3558999999999999999999999999999999999999999999999999999998766 788889999994
Q ss_pred CCCCCCCchhhhhccHH
Q 013867 354 APPLESEGVETKVDRTD 370 (435)
Q Consensus 354 ~~~~~hp~~a~~l~nla 370 (435)
.+|++|+.+..+-.++-
T Consensus 1132 qlg~~hsrt~~S~~~~~ 1148 (1236)
T KOG1839|consen 1132 QLGPDHSRTKESSEWLN 1148 (1236)
T ss_pred hhCCCcccchhhHHHHH
Confidence 67999999886665444
No 71
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.59 E-value=1.3e-05 Score=83.43 Aligned_cols=174 Identities=11% Similarity=0.050 Sum_probs=96.9
Q ss_pred ChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHH
Q 013867 78 SDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSI-LGVRVAAMEALAGLY 156 (435)
Q Consensus 78 s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~-L~i~vaale~L~g~~ 156 (435)
..|+|++|+..+.++.+.. |+-...+.-.|.++..+|++++|.+.|+++.+..... +.++
T Consensus 96 ~~g~~~~A~~~l~~~~~~~--------~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~----------- 156 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHA--------AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVE----------- 156 (409)
T ss_pred hCCCHHHHHHHHHHHhhcC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHH-----------
Confidence 3689999999999877543 3334555568899999999999999999975432211 1110
Q ss_pred HhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhch
Q 013867 157 LQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNF 236 (435)
Q Consensus 157 ~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y 236 (435)
.....+...++. +++|... .. .+-... |....+...++.+|..+|+|
T Consensus 157 -------------~~~a~l~l~~~~--~~~Al~~--l~--------~l~~~~--------P~~~~~l~ll~~~~~~~~d~ 203 (409)
T TIGR00540 157 -------------IARTRILLAQNE--LHAARHG--VD--------KLLEMA--------PRHKEVLKLAEEAYIRSGAW 203 (409)
T ss_pred -------------HHHHHHHHHCCC--HHHHHHH--HH--------HHHHhC--------CCCHHHHHHHHHHHHHHhhH
Confidence 011222222221 3222111 11 111111 33345556667778888888
Q ss_pred HHHHHHHHHHHHHHH---H---------h---cc--cCCC--CCcc-cccccchH--HHHHHHHHHHHHHHHcCCHHHHH
Q 013867 237 LLAKKFYQKVIEVLA---E---------Q---KD--FSDM--NTLG-SCNMALEE--VALAATFALGQLEAHMGNFGDAE 294 (435)
Q Consensus 237 ~eAe~ly~rAL~I~~---~---------~---~~--~~~~--~~l~-~~~~~~~~--~~l~~l~nLa~ly~~qG~y~eAe 294 (435)
++|++++++.++... . . .. ..+. ..+- .-...|++ -.......+|.++..+|++++|+
T Consensus 204 ~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~ 283 (409)
T TIGR00540 204 QALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQ 283 (409)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHH
Confidence 888887777763300 0 0 00 0000 0000 00001210 01234467899999999999999
Q ss_pred HHHHHHHHH
Q 013867 295 EILTRTLTK 303 (435)
Q Consensus 295 ~l~~rAL~I 303 (435)
..+++++.+
T Consensus 284 ~~l~~~l~~ 292 (409)
T TIGR00540 284 EIIFDGLKK 292 (409)
T ss_pred HHHHHHHhh
Confidence 999999985
No 72
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=98.57 E-value=8.2e-08 Score=66.65 Aligned_cols=41 Identities=22% Similarity=0.203 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcC-CCCCCCc
Q 013867 315 VGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKA-PPLESEG 361 (435)
Q Consensus 315 va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~-~~~~hp~ 361 (435)
|+.+++|||.+|..+|++++| +.+++++++|++. +|++|||
T Consensus 1 ta~~~~~la~~~~~~g~~~~A------~~~~~~al~~~~~~~G~~Hpd 42 (42)
T PF13374_consen 1 TASALNNLANAYRAQGRYEEA------LELLEEALEIRERLLGPDHPD 42 (42)
T ss_dssp -HHHHHHHHHHHHHCT-HHHH------HHHHHHHHHHH----------
T ss_pred CHHHHHHHHHHHHhhhhcchh------hHHHHHHHHHHHHHhcccccC
Confidence 689999999999999998776 9999999999965 5999996
No 73
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.55 E-value=1.8e-06 Score=78.98 Aligned_cols=91 Identities=15% Similarity=0.239 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcC
Q 013867 275 AATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKA 354 (435)
Q Consensus 275 ~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~ 354 (435)
..+.++|.+|..+|+|++|..+|++++.+. +++|..+..+.++|.+|...|++++| +..|++++.+.
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~la~~~~~~g~~~~A------~~~~~~al~~~-- 102 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLE-----EDPNDRSYILYNMGIIYASNGEHDKA------LEYYHQALELN-- 102 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-----hccchHHHHHHHHHHHHHHcCCHHHH------HHHHHHHHHhC--
Confidence 467899999999999999999999999974 56777889999999999999998877 88999999974
Q ss_pred CCCCCCchhhhhccHHHHHHHhcCHHHHh
Q 013867 355 PPLESEGVETKVDRTDIVALARGGYAEAL 383 (435)
Q Consensus 355 ~~~~hp~~a~~l~nla~~~~a~G~yaeal 383 (435)
|+....+.+++.++..+|+...+.
T Consensus 103 -----p~~~~~~~~lg~~~~~~g~~~~a~ 126 (172)
T PRK02603 103 -----PKQPSALNNIAVIYHKRGEKAEEA 126 (172)
T ss_pred -----cccHHHHHHHHHHHHHcCChHhHh
Confidence 343455667888888777655443
No 74
>PLN03077 Protein ECB2; Provisional
Probab=98.54 E-value=9.5e-06 Score=91.90 Aligned_cols=88 Identities=13% Similarity=0.086 Sum_probs=60.2
Q ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013867 223 ALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLT 302 (435)
Q Consensus 223 a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~ 302 (435)
.+.+...|...|+.++|+.+|++..+. | + .|+++ +++.|-..+.+.|++++|..+|++...
T Consensus 557 ~n~lI~~~~~~G~~~~A~~lf~~M~~~-----g------~-----~Pd~~---T~~~ll~a~~~~g~v~ea~~~f~~M~~ 617 (857)
T PLN03077 557 WNILLTGYVAHGKGSMAVELFNRMVES-----G------V-----NPDEV---TFISLLCACSRSGMVTQGLEYFHSMEE 617 (857)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc-----C------C-----CCCcc---cHHHHHHHHhhcChHHHHHHHHHHHHH
Confidence 344556677888888888888876533 2 1 13332 244555568889999999998887653
Q ss_pred HHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhh
Q 013867 303 KTEELFGSHHPKVGVVLTCLALMFRNKAMQEHS 335 (435)
Q Consensus 303 I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A 335 (435)
.+ | -.|++ .++++|..+|.+.|+.++|
T Consensus 618 ~~----g-i~P~~-~~y~~lv~~l~r~G~~~eA 644 (857)
T PLN03077 618 KY----S-ITPNL-KHYACVVDLLGRAGKLTEA 644 (857)
T ss_pred Hh----C-CCCch-HHHHHHHHHHHhCCCHHHH
Confidence 32 2 34554 7789999999999998777
No 75
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.51 E-value=1.1e-06 Score=73.43 Aligned_cols=96 Identities=11% Similarity=0.074 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCC
Q 013867 276 ATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAP 355 (435)
Q Consensus 276 ~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~ 355 (435)
.+.++|..+..+|+|++|...|++++.. .|++|....++.++|.+|...|++++| ..+|++++...
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~A------~~~~~~~~~~~--- 69 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKK-----YPKSTYAPNAHYWLGEAYYAQGKYADA------AKAFLAVVKKY--- 69 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCccccHHHHHHHHHHHHhhccHHHH------HHHHHHHHHHC---
Confidence 4689999999999999999999999865 478888889999999999999998776 88899888754
Q ss_pred CCCCCchhhhhccHHHHHHHhcCHHHHhhHh
Q 013867 356 PLESEGVETKVDRTDIVALARGGYAEALSVQ 386 (435)
Q Consensus 356 ~~~hp~~a~~l~nla~~~~a~G~yaeal~~~ 386 (435)
|+++.+...+.+++.++..+|++.+|+...
T Consensus 70 -p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 99 (119)
T TIGR02795 70 -PKSPKAPDALLKLGMSLQELGDKEKAKATL 99 (119)
T ss_pred -CCCCcccHHHHHHHHHHHHhCChHHHHHHH
Confidence 566666667788999999988888777655
No 76
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.51 E-value=9.3e-07 Score=83.53 Aligned_cols=114 Identities=14% Similarity=0.112 Sum_probs=90.7
Q ss_pred hhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCC
Q 013867 233 TRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHH 312 (435)
Q Consensus 233 ~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~H 312 (435)
.++.++++..++++|+. . |+ ......+||.+|..+|+|++|...|++|+.+.
T Consensus 52 ~~~~~~~i~~l~~~L~~-----------~-------P~--~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-------- 103 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA-----------N-------PQ--NSEQWALLGEYYLWRNDYDNALLAYRQALQLR-------- 103 (198)
T ss_pred chhHHHHHHHHHHHHHH-----------C-------CC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------
Confidence 57788999999999988 1 11 12467899999999999999999999999863
Q ss_pred hhHHHHHHHHHHH-HHHhhhh--hhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHHHhhHhh
Q 013867 313 PKVGVVLTCLALM-FRNKAMQ--EHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQQ 387 (435)
Q Consensus 313 P~va~~L~nLA~l-y~~qG~~--e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~~ 387 (435)
|+-...+.++|.+ |...|++ ++| ..++++++++- |+....+.+++.++..+|+|++|...++
T Consensus 104 P~~~~~~~~lA~aL~~~~g~~~~~~A------~~~l~~al~~d-------P~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 104 GENAELYAALATVLYYQAGQHMTPQT------REMIDKALALD-------ANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred CCCHHHHHHHHHHHHHhcCCCCcHHH------HHHHHHHHHhC-------CCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5566777899986 5777874 444 89999998876 3334577889999999999999988763
No 77
>PLN03077 Protein ECB2; Provisional
Probab=98.50 E-value=3.7e-05 Score=87.11 Aligned_cols=47 Identities=21% Similarity=0.217 Sum_probs=34.1
Q ss_pred hhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013867 79 DESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVEN 136 (435)
Q Consensus 79 ~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~ 136 (435)
.|++++|..+|++.- .|++ .++|.|-..|.+.|++++|+++|++...
T Consensus 235 ~g~~~~A~~lf~~m~----------~~d~-~s~n~li~~~~~~g~~~eAl~lf~~M~~ 281 (857)
T PLN03077 235 CGDVVSARLVFDRMP----------RRDC-ISWNAMISGYFENGECLEGLELFFTMRE 281 (857)
T ss_pred CCCHHHHHHHHhcCC----------CCCc-chhHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 468888888888742 1222 4678888888888888888888877543
No 78
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.48 E-value=1.1e-05 Score=83.92 Aligned_cols=218 Identities=13% Similarity=0.076 Sum_probs=122.5
Q ss_pred ChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhh---hHH-HHHHHHHHHH
Q 013867 78 SDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNS---ILG-VRVAAMEALA 153 (435)
Q Consensus 78 s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~---~L~-i~vaale~L~ 153 (435)
.+|+|++|+..+++.++.. |+||.+ +.-++.+|..+|+|++|++++.+..+.... .+. .+..+.-.+.
T Consensus 165 ~~g~~~~Al~~l~~~~~~~-----P~~~~a---l~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~ 236 (398)
T PRK10747 165 ARNENHAARHGVDKLLEVA-----PRHPEV---LRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLM 236 (398)
T ss_pred HCCCHHHHHHHHHHHHhcC-----CCCHHH---HHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 4689999999999998554 666654 556689999999999999888776543211 000 0000000000
Q ss_pred HHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccc-----cccchhHHHHHHHH
Q 013867 154 GLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQE-----EEGCTGSAALSYGE 228 (435)
Q Consensus 154 g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~-----~~~~~~~~a~~la~ 228 (435)
..... ..+ + .....+..-+-...+ .+.+.....+.+. ...|+++.|... ..+.....+.-++.
T Consensus 237 ~~~~~-~~~--~-~~l~~~w~~lp~~~~---~~~~~~~~~A~~l-----~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~ 304 (398)
T PRK10747 237 DQAMA-DQG--S-EGLKRWWKNQSRKTR---HQVALQVAMAEHL-----IECDDHDTAQQIILDGLKRQYDERLVLLIPR 304 (398)
T ss_pred HHHHH-hcC--H-HHHHHHHHhCCHHHh---CCHHHHHHHHHHH-----HHCCCHHHHHHHHHHHHhcCCCHHHHHHHhh
Confidence 00000 000 0 000111000000000 0111111111111 122332222110 01112233333433
Q ss_pred HHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhh
Q 013867 229 YLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELF 308 (435)
Q Consensus 229 ~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~l 308 (435)
+ ..|++++|....++.++- + |+++ ..+.-+|.++..+|+|++|+..|++++++
T Consensus 305 l--~~~~~~~al~~~e~~lk~---------~---------P~~~--~l~l~lgrl~~~~~~~~~A~~~le~al~~----- 357 (398)
T PRK10747 305 L--KTNNPEQLEKVLRQQIKQ---------H---------GDTP--LLWSTLGQLLMKHGEWQEASLAFRAALKQ----- 357 (398)
T ss_pred c--cCCChHHHHHHHHHHHhh---------C---------CCCH--HHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----
Confidence 3 459999999888887755 1 1111 24568999999999999999999999987
Q ss_pred CCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 309 GSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 309 G~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
+|+... +.-||.++..+|+.++| ..+|+++|...
T Consensus 358 ---~P~~~~-~~~La~~~~~~g~~~~A------~~~~~~~l~~~ 391 (398)
T PRK10747 358 ---RPDAYD-YAWLADALDRLHKPEEA------AAMRRDGLMLT 391 (398)
T ss_pred ---CCCHHH-HHHHHHHHHHcCCHHHH------HHHHHHHHhhh
Confidence 566544 44799999999998877 89999999876
No 79
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.46 E-value=2.7e-05 Score=88.10 Aligned_cols=256 Identities=12% Similarity=-0.005 Sum_probs=161.7
Q ss_pred HHHHHHHHHHHHhhhccCChhcH---HHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013867 60 PVVLQMINYALSHARSQKSDESY---SQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVEN 136 (435)
Q Consensus 60 ~vA~~m~~~a~~~~r~~~s~G~Y---~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~ 136 (435)
+.|.++|+.|..-.++. .++| |+|+.-+++.+..+. ...+.||..-+.....=.++...|++++++..|+....
T Consensus 244 ~~~a~~vr~a~~~~~~~--~~r~~~~d~ala~~~~l~~~~~-~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~ 320 (822)
T PRK14574 244 DAAAEQVRMAVLPTRSE--TERFDIADKALADYQNLLTRWG-KDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEA 320 (822)
T ss_pred HHHHHHHhhcccccccc--hhhHHHHHHHHHHHHHHHhhcc-CCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhh
Confidence 45778888876543321 2344 456666666665554 34567777777777777889999999999999997542
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHH-----------------HHHhcC-CCchhchhhHHHHHHHHH
Q 013867 137 FKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQ-----------------LCEKHK-PENYKTYGAVNSRANAVK 198 (435)
Q Consensus 137 i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~-----------------l~~~~~-~~~~~eaeal~~~a~Ai~ 198 (435)
-... +... +...++-.|+..++...|+.++..++. |+-... ..+|++|..+....+.-.
T Consensus 321 ~~~~-~P~y--~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~ 397 (822)
T PRK14574 321 EGYK-MPDY--ARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQT 397 (822)
T ss_pred cCCC-CCHH--HHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcC
Confidence 2111 1111 334555667777877777777665422 111111 112333322211111100
Q ss_pred H-HHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHH
Q 013867 199 G-LVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAAT 277 (435)
Q Consensus 199 ~-~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l 277 (435)
- .+...|+. ...-+|+....-..++.++--.|++.+|+..+++.+.+ .+| | ...+
T Consensus 398 p~~~~~~~~~----~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~-----------aP~--n-------~~l~ 453 (822)
T PRK14574 398 PYQVGVYGLP----GKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST-----------APA--N-------QNLR 453 (822)
T ss_pred CcEEeccCCC----CCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----------CCC--C-------HHHH
Confidence 0 00001100 01223555555566778888999999999999999887 223 1 1346
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCC
Q 013867 278 FALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPL 357 (435)
Q Consensus 278 ~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~ 357 (435)
..+|.++..+|++.+|+..|++++.+ ||+-..+...+|.++..+|++.+| +.+....++.. |
T Consensus 454 ~~~A~v~~~Rg~p~~A~~~~k~a~~l--------~P~~~~~~~~~~~~al~l~e~~~A------~~~~~~l~~~~----P 515 (822)
T PRK14574 454 IALASIYLARDLPRKAEQELKAVESL--------APRSLILERAQAETAMALQEWHQM------ELLTDDVISRS----P 515 (822)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhh--------CCccHHHHHHHHHHHHhhhhHHHH------HHHHHHHHhhC----C
Confidence 79999999999999999999888765 788888899999999999997766 66666666554 6
Q ss_pred CCCchh
Q 013867 358 ESEGVE 363 (435)
Q Consensus 358 ~hp~~a 363 (435)
+++.+.
T Consensus 516 e~~~~~ 521 (822)
T PRK14574 516 EDIPSQ 521 (822)
T ss_pred CchhHH
Confidence 777544
No 80
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.46 E-value=1.9e-06 Score=74.58 Aligned_cols=91 Identities=16% Similarity=0.053 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcC
Q 013867 275 AATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKA 354 (435)
Q Consensus 275 ~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~ 354 (435)
..+.++|..|..+|+|++|..+|++++.+ +|.....+.++|.+|..+|++++| ...|++++++.
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~la~~~~~~~~~~~A------~~~~~~~~~~~-- 81 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAY--------DPYNSRYWLGLAACCQMLKEYEEA------IDAYALAAALD-- 81 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhcC--
Confidence 45789999999999999999999998885 466678889999999999998766 88999988874
Q ss_pred CCCCCCchhhhhccHHHHHHHhcCHHHHhhHh
Q 013867 355 PPLESEGVETKVDRTDIVALARGGYAEALSVQ 386 (435)
Q Consensus 355 ~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~ 386 (435)
|+......+++.++...|++++|+..+
T Consensus 82 -----p~~~~~~~~la~~~~~~g~~~~A~~~~ 108 (135)
T TIGR02552 82 -----PDDPRPYFHAAECLLALGEPESALKAL 108 (135)
T ss_pred -----CCChHHHHHHHHHHHHcCCHHHHHHHH
Confidence 444456678999999999999887765
No 81
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.45 E-value=4.9e-06 Score=72.91 Aligned_cols=114 Identities=21% Similarity=0.110 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCC
Q 013867 276 ATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAP 355 (435)
Q Consensus 276 ~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~ 355 (435)
...++|.++..+|+.++|+++|++|++ .|.+-+.-...+.++|..|+..|++++| +.+++++++-+
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~-----~gL~~~~~~~a~i~lastlr~LG~~deA------~~~L~~~~~~~--- 68 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALA-----AGLSGADRRRALIQLASTLRNLGRYDEA------LALLEEALEEF--- 68 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCchHHHHHHHHHHHHHHHcCCHHHH------HHHHHHHHHHC---
Confidence 357899999999999999999999988 4888888888999999999999998877 78888886532
Q ss_pred CCCCCchhhhhccHHHHHHHhcCHHHHhhHhhhhhhHHHHHHHHHHHHh
Q 013867 356 PLESEGVETKVDRTDIVALARGGYAEALSVQQNRKDEGERMKRWAEAAW 404 (435)
Q Consensus 356 ~~~hp~~a~~l~nla~~~~a~G~yaeal~~~~~r~~eae~~~~~a~~~~ 404 (435)
|+.+.....--.+++++...|++.||+.....-..+--..++.|...|
T Consensus 69 -p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la~~~~~y~ra~~~y 116 (120)
T PF12688_consen 69 -PDDELNAALRVFLALALYNLGRPKEALEWLLEALAETLPRYRRAIRFY 116 (120)
T ss_pred -CCccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 221111111123778888999999999887554444333444444433
No 82
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.41 E-value=9.4e-05 Score=77.74 Aligned_cols=104 Identities=13% Similarity=0.104 Sum_probs=79.4
Q ss_pred cchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 013867 217 GCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEI 296 (435)
Q Consensus 217 ~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l 296 (435)
|..+.+..-.|.++.-.++|++|..=|++|+.+. |++ +-+..-|+.+.++|+++++++..
T Consensus 391 p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~------------------pe~--~~~~iQl~~a~Yr~~k~~~~m~~ 450 (606)
T KOG0547|consen 391 PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD------------------PEN--AYAYIQLCCALYRQHKIAESMKT 450 (606)
T ss_pred CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC------------------hhh--hHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444556666788889988888888771 221 12456788899999999999999
Q ss_pred HHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcC
Q 013867 297 LTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKA 354 (435)
Q Consensus 297 ~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~ 354 (435)
|+.+.. .-|.-..++|-.|.++-.|+++++| +..|..|+++-..
T Consensus 451 Fee~kk--------kFP~~~Evy~~fAeiLtDqqqFd~A------~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 451 FEEAKK--------KFPNCPEVYNLFAEILTDQQQFDKA------VKQYDKAIELEPR 494 (606)
T ss_pred HHHHHH--------hCCCCchHHHHHHHHHhhHHhHHHH------HHHHHHHHhhccc
Confidence 999876 4588888999999999999998877 8889988887643
No 83
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.41 E-value=9e-05 Score=83.89 Aligned_cols=305 Identities=12% Similarity=0.007 Sum_probs=149.4
Q ss_pred cCCCCChHHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcc-hHHHHHHHHHHHHHHcCCHHHHHHHH
Q 013867 53 INGLNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAES-WRGISLLAMSTLLYESGNYVEAIEKL 131 (435)
Q Consensus 53 ~~g~~~~~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp-~~A~~l~nLa~ly~~qGky~eA~~l~ 131 (435)
++.|+||.+.-. -|+...| +|+|++|+..|++++++. |+++ .+. .+..++...|++++|+..+
T Consensus 28 ~~~p~~~~~~y~---~aii~~r----~Gd~~~Al~~L~qaL~~~-----P~~~~av~----dll~l~~~~G~~~~A~~~~ 91 (822)
T PRK14574 28 VVNPAMADTQYD---SLIIRAR----AGDTAPVLDYLQEESKAG-----PLQSGQVD----DWLQIAGWAGRDQEVIDVY 91 (822)
T ss_pred ccCccchhHHHH---HHHHHHh----CCCHHHHHHHHHHHHhhC-----ccchhhHH----HHHHHHHHcCCcHHHHHHH
Confidence 468888884332 3333333 689999999999999766 3332 222 8888888999999999999
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCccc
Q 013867 132 QKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESG 211 (435)
Q Consensus 132 ~ral~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a 211 (435)
+++.+-.... .-.+..++.++..+|+++.|..++..++..- +. +.+.+. .. .....-.++.++|
T Consensus 92 eka~~p~n~~----~~~llalA~ly~~~gdyd~Aiely~kaL~~d----P~---n~~~l~--gL---a~~y~~~~q~~eA 155 (822)
T PRK14574 92 ERYQSSMNIS----SRGLASAARAYRNEKRWDQALALWQSSLKKD----PT---NPDLIS--GM---IMTQADAGRGGVV 155 (822)
T ss_pred HHhccCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----CC---CHHHHH--HH---HHHHhhcCCHHHH
Confidence 9986211000 1112233455666677666655544433221 10 111111 00 0000011111111
Q ss_pred ccc------cccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHH
Q 013867 212 LQE------EEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEA 285 (435)
Q Consensus 212 ~~~------~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~ 285 (435)
... ..|.... ...++.+++.++++.+|+..|+++++.. |+ ....+..+..++.
T Consensus 156 l~~l~~l~~~dp~~~~-~l~layL~~~~~~~~~AL~~~ekll~~~------------------P~--n~e~~~~~~~~l~ 214 (822)
T PRK14574 156 LKQATELAERDPTVQN-YMTLSYLNRATDRNYDALQASSEAVRLA------------------PT--SEEVLKNHLEILQ 214 (822)
T ss_pred HHHHHHhcccCcchHH-HHHHHHHHHhcchHHHHHHHHHHHHHhC------------------CC--CHHHHHHHHHHHH
Confidence 100 0121111 1333445555666666777777776660 00 0123445556666
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhhCCCCh-----hHHHHHHHHHHHHHHh--hhhhhhhhhHHHHHHHHHHHHHhcCCCCC
Q 013867 286 HMGNFGDAEEILTRTLTKTEELFGSHHP-----KVGVVLTCLALMFRNK--AMQEHSSALLIQEGLYRRALEFLKAPPLE 358 (435)
Q Consensus 286 ~qG~y~eAe~l~~rAL~I~e~~lG~~HP-----~va~~L~nLA~ly~~q--G~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~ 358 (435)
..|-..-|+++.++- ...|-++|- +.+..+.++|...... .++..+ ..|..-|.+.+..+...++.
T Consensus 215 ~~~~~~~a~~l~~~~----p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~---d~ala~~~~l~~~~~~~p~~ 287 (822)
T PRK14574 215 RNRIVEPALRLAKEN----PNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIA---DKALADYQNLLTRWGKDPEA 287 (822)
T ss_pred HcCCcHHHHHHHHhC----ccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHH---HHHHHHHHHHHhhccCCCcc
Confidence 666666666555531 111111110 1233444444333221 222221 22334444444444333556
Q ss_pred CCchhhhhccHHHHHHHhcCHHHHhhHhhhhhhHHHHHH----H-HHHHHhcccchhHHHHhcc
Q 013867 359 SEGVETKVDRTDIVALARGGYAEALSVQQNRKDEGERMK----R-WAEAAWRNRRVSLAEALNF 417 (435)
Q Consensus 359 hp~~a~~l~nla~~~~a~G~yaeal~~~~~r~~eae~~~----~-~a~~~~~~~r~~l~~~l~~ 417 (435)
|+.......-+=+++..+|+|++++..++.=..++.+|= . .|.++-..+++.-|+.+..
T Consensus 288 ~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~ 351 (822)
T PRK14574 288 QADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILS 351 (822)
T ss_pred chHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 666433333345566789999999887744343443211 1 3444445666665655554
No 84
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.41 E-value=2.3e-06 Score=87.80 Aligned_cols=99 Identities=11% Similarity=0.120 Sum_probs=81.1
Q ss_pred HHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 013867 226 YGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTE 305 (435)
Q Consensus 226 la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e 305 (435)
-|.-+...|+|++|+.+|++||++. + . ....+.++|.+|..+|+|++|...+++|+.+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~--------P-~-----------~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l-- 65 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD--------P-N-----------NAELYADRAQANIKLGNFTEAVADANKAIEL-- 65 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC--------C-C-----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence 3555678999999999999999881 1 1 1245789999999999999999999999997
Q ss_pred HhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCch
Q 013867 306 ELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGV 362 (435)
Q Consensus 306 ~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~ 362 (435)
.|+-+..+.++|.+|...|+|++| +..|++++++. |+++.+
T Consensus 66 ------~P~~~~a~~~lg~~~~~lg~~~eA------~~~~~~al~l~----P~~~~~ 106 (356)
T PLN03088 66 ------DPSLAKAYLRKGTACMKLEEYQTA------KAALEKGASLA----PGDSRF 106 (356)
T ss_pred ------CcCCHHHHHHHHHHHHHhCCHHHH------HHHHHHHHHhC----CCCHHH
Confidence 355566799999999999998776 89999999876 455543
No 85
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.39 E-value=2.2e-06 Score=66.11 Aligned_cols=64 Identities=20% Similarity=0.303 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhh-hhhhhhhhHHHHHHHHHHHHHh
Q 013867 275 AATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKA-MQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 275 ~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG-~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
..+.++|..+..+|+|++|+..|++|+.+ +|+-+..+.|+|.+|..+| ++++| ...|++|+++.
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--------~p~~~~~~~~~g~~~~~~~~~~~~A------~~~~~~al~l~ 68 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIEL--------DPNNAEAYYNLGLAYMKLGKDYEEA------IEDFEKALKLD 68 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHH--------STTHHHHHHHHHHHHHHTTTHHHHH------HHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhCccHHHH------HHHHHHHHHcC
Confidence 35789999999999999999999999998 5777789999999999999 77766 89999999863
No 86
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.36 E-value=7.9e-06 Score=74.66 Aligned_cols=110 Identities=11% Similarity=-0.004 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 273 ALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 273 ~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
++..+..+|..+..+|+|++|+.+|+-...+ .|....-..|||.+++.+|+|++| ...|.+|+.+-
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--------Dp~~~~y~~gLG~~~Q~~g~~~~A------I~aY~~A~~L~ 99 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIY--------DAWSFDYWFRLGECCQAQKHWGEA------IYAYGRAAQIK 99 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHHhhHHHH------HHHHHHHHhcC
Confidence 4567889999999999999999999887776 688899999999999999998776 89999998775
Q ss_pred cCCCCCCCchhhhhccHHHHHHHhcCHHHHhhHhhhhhhHH------HHHHHHHHHH
Q 013867 353 KAPPLESEGVETKVDRTDIVALARGGYAEALSVQQNRKDEG------ERMKRWAEAA 403 (435)
Q Consensus 353 k~~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~~~r~~ea------e~~~~~a~~~ 403 (435)
+++|. ...|++.+++..|+.++|...+..-..-. ..++.+|+.+
T Consensus 100 ----~ddp~---~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~~~~l~~~A~~~ 149 (157)
T PRK15363 100 ----IDAPQ---APWAAAECYLACDNVCYAIKALKAVVRICGEVSEHQILRQRAEKM 149 (157)
T ss_pred ----CCCch---HHHHHHHHHHHcCCHHHHHHHHHHHHHHhccChhHHHHHHHHHHH
Confidence 45554 56789999999999999988774333322 4555555544
No 87
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.33 E-value=3.5e-06 Score=64.92 Aligned_cols=63 Identities=21% Similarity=0.354 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcC-CHHHHHHHHHH
Q 013867 221 SAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMG-NFGDAEEILTR 299 (435)
Q Consensus 221 ~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG-~y~eAe~l~~r 299 (435)
.+..++|..+..+|+|++|+..|++|+++ . |+ ....++++|.+|..+| +|++|...|++
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~-----------~-------p~--~~~~~~~~g~~~~~~~~~~~~A~~~~~~ 63 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIEL-----------D-------PN--NAEAYYNLGLAYMKLGKDYEEAIEDFEK 63 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHH-----------S-------TT--HHHHHHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----------C-------CC--CHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence 45667899999999999999999999998 1 22 2357899999999999 79999999999
Q ss_pred HHHH
Q 013867 300 TLTK 303 (435)
Q Consensus 300 AL~I 303 (435)
|+++
T Consensus 64 al~l 67 (69)
T PF13414_consen 64 ALKL 67 (69)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 9986
No 88
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.32 E-value=8.1e-06 Score=72.69 Aligned_cols=97 Identities=18% Similarity=0.205 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013867 221 SAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRT 300 (435)
Q Consensus 221 ~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rA 300 (435)
.+.+.+|..+..+|+|++|...|+++++- ... +.+ .--+...||.++..+|+|++|...+++
T Consensus 49 ~A~l~lA~~~~~~g~~~~A~~~l~~~~~~---~~d----~~l----------~~~a~l~LA~~~~~~~~~d~Al~~L~~- 110 (145)
T PF09976_consen 49 LAALQLAKAAYEQGDYDEAKAALEKALAN---APD----PEL----------KPLARLRLARILLQQGQYDEALATLQQ- 110 (145)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhh---CCC----HHH----------HHHHHHHHHHHHHHcCCHHHHHHHHHh-
Confidence 44566788999999999999999999976 111 111 112456899999999999999999855
Q ss_pred HHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHH
Q 013867 301 LTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRAL 349 (435)
Q Consensus 301 L~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL 349 (435)
.++.+.......-+|.+|..+|++++| ...|++||
T Consensus 111 --------~~~~~~~~~~~~~~Gdi~~~~g~~~~A------~~~y~~Al 145 (145)
T PF09976_consen 111 --------IPDEAFKALAAELLGDIYLAQGDYDEA------RAAYQKAL 145 (145)
T ss_pred --------ccCcchHHHHHHHHHHHHHHCCCHHHH------HHHHHHhC
Confidence 345666777888999999999998877 78899885
No 89
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.32 E-value=0.00017 Score=80.21 Aligned_cols=245 Identities=14% Similarity=0.126 Sum_probs=150.4
Q ss_pred CChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhh-----H-HH------
Q 013867 77 KSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSI-----L-GV------ 144 (435)
Q Consensus 77 ~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~-----L-~i------ 144 (435)
..+|.+++|.-+|.++++.. |+.-..+..-+.+|.+.|++..|.+-|++.+...... . .|
T Consensus 218 ~~~~~i~qA~~cy~rAI~~~--------p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~ 289 (895)
T KOG2076|consen 218 EQLGNINQARYCYSRAIQAN--------PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHY 289 (895)
T ss_pred HhcccHHHHHHHHHHHHhcC--------CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHH
Confidence 35789999999999999655 5668888999999999999999999999987654411 0 11
Q ss_pred ------HHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhc-------------
Q 013867 145 ------RVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAH------------- 205 (435)
Q Consensus 145 ------~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lg------------- 205 (435)
+..++..+-+.. ..|.+..+....+..+.++.+.. .+.+++..++...+
T Consensus 290 ~~~~~~~e~a~~~le~~~-s~~~~~~~~ed~ni~ael~l~~~-----------q~d~~~~~i~~~~~r~~e~d~~e~~~~ 357 (895)
T KOG2076|consen 290 FITHNERERAAKALEGAL-SKEKDEASLEDLNILAELFLKNK-----------QSDKALMKIVDDRNRESEKDDSEWDTD 357 (895)
T ss_pred HHHhhHHHHHHHHHHHHH-hhccccccccHHHHHHHHHHHhH-----------HHHHhhHHHHHHhccccCCChhhhhhh
Confidence 111233333322 24444444444444444443322 11222222221111
Q ss_pred ----------CCCccc-----------------------cccc---------ccchhHHHHHHHHHHHHhhchHHHHHHH
Q 013867 206 ----------GNLESG-----------------------LQEE---------EGCTGSAALSYGEYLHATRNFLLAKKFY 243 (435)
Q Consensus 206 ----------g~h~~a-----------------------~~~~---------~~~~~~~a~~la~~~~~~G~y~eAe~ly 243 (435)
-++++. ..+. ..........++..|...|+|.+|.++|
T Consensus 358 ~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l 437 (895)
T KOG2076|consen 358 ERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLL 437 (895)
T ss_pred hhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHH
Confidence 000000 0000 1223455566788999999999999999
Q ss_pred HHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHH
Q 013867 244 QKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLA 323 (435)
Q Consensus 244 ~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA 323 (435)
-....- . ... ......++|..|..+|.|++|.+.|+++|.. -|+...+...|+
T Consensus 438 ~~i~~~----~------~~~---------~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~--------~p~~~D~Ri~La 490 (895)
T KOG2076|consen 438 SPITNR----E------GYQ---------NAFVWYKLARCYMELGEYEEAIEFYEKVLIL--------APDNLDARITLA 490 (895)
T ss_pred HHHhcC----c------ccc---------chhhhHHHHHHHHHHhhHHHHHHHHHHHHhc--------CCCchhhhhhHH
Confidence 876533 1 111 1124579999999999999999999999974 344455566788
Q ss_pred HHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCC-CCCCC--------chhhhhccHHHHHHHhcCHHH
Q 013867 324 LMFRNKAMQEHSSALLIQEGLYRRALEFLKAP-PLESE--------GVETKVDRTDIVALARGGYAE 381 (435)
Q Consensus 324 ~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~-~~~hp--------~~a~~l~nla~~~~a~G~yae 381 (435)
.+|..+|+.|+| +++.+.+ .+||. .-...+-++..++...|+.++
T Consensus 491 sl~~~~g~~Eka-------------lEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~ 544 (895)
T KOG2076|consen 491 SLYQQLGNHEKA-------------LETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREE 544 (895)
T ss_pred HHHHhcCCHHHH-------------HHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHH
Confidence 999999997654 5555432 34432 234455566666667776665
No 90
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.32 E-value=4e-06 Score=76.60 Aligned_cols=100 Identities=14% Similarity=0.081 Sum_probs=83.8
Q ss_pred hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013867 219 TGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILT 298 (435)
Q Consensus 219 ~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~ 298 (435)
..+....+|..+..+|+|++|+.+|+-...+ ++ . ...-..|||.+++.+|+|.+|...|.
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--------Dp-~-----------~~~y~~gLG~~~Q~~g~~~~AI~aY~ 93 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIY--------DA-W-----------SFDYWFRLGECCQAQKHWGEAIYAYG 93 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------Cc-c-----------cHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3456677888899999999999999999988 11 1 11346799999999999999999999
Q ss_pred HHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 299 RTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 299 rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
+|+.+ .++|| ....|+|.+|-..|+.++| +.-|+.|+.+.
T Consensus 94 ~A~~L-----~~ddp---~~~~~ag~c~L~lG~~~~A------~~aF~~Ai~~~ 133 (157)
T PRK15363 94 RAAQI-----KIDAP---QAPWAAAECYLACDNVCYA------IKALKAVVRIC 133 (157)
T ss_pred HHHhc-----CCCCc---hHHHHHHHHHHHcCCHHHH------HHHHHHHHHHh
Confidence 99976 35555 5789999999999998766 89999999998
No 91
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=5e-05 Score=79.32 Aligned_cols=130 Identities=15% Similarity=0.140 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013867 221 SAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRT 300 (435)
Q Consensus 221 ~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rA 300 (435)
.+-.++|..|..++-..=|.-+|+||++. + |.+. ..+..||..|.+.++.+||+.+|+||
T Consensus 399 RAWYGLGQaYeim~Mh~YaLyYfqkA~~~----k--------------PnDs--Rlw~aLG~CY~kl~~~~eAiKCykra 458 (559)
T KOG1155|consen 399 RAWYGLGQAYEIMKMHFYALYYFQKALEL----K--------------PNDS--RLWVALGECYEKLNRLEEAIKCYKRA 458 (559)
T ss_pred HHHhhhhHHHHHhcchHHHHHHHHHHHhc----C--------------CCch--HHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 34455566666666666667777776665 1 1111 34568999999999999999999999
Q ss_pred HHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHH
Q 013867 301 LTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYA 380 (435)
Q Consensus 301 L~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~ya 380 (435)
+.... - -...|..||.+|...+++++| -..|++.++....-|...|.+....-.|+.-....++|.
T Consensus 459 i~~~d-----t---e~~~l~~LakLye~l~d~~eA------a~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~ 524 (559)
T KOG1155|consen 459 ILLGD-----T---EGSALVRLAKLYEELKDLNEA------AQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFD 524 (559)
T ss_pred Hhccc-----c---chHHHHHHHHHHHHHHhHHHH------HHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchH
Confidence 87532 1 468899999999999997766 788999999986668888877777777999999999999
Q ss_pred HHhh
Q 013867 381 EALS 384 (435)
Q Consensus 381 eal~ 384 (435)
+|-.
T Consensus 525 ~As~ 528 (559)
T KOG1155|consen 525 EASY 528 (559)
T ss_pred HHHH
Confidence 9855
No 92
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.26 E-value=0.00011 Score=78.58 Aligned_cols=144 Identities=13% Similarity=0.173 Sum_probs=98.8
Q ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHHHHH----hcc--c--CCCCCcc----cccccchHHHHHHHHHHHHHHHHcCCH
Q 013867 223 ALSYGEYLHATRNFLLAKKFYQKVIEVLAE----QKD--F--SDMNTLG----SCNMALEEVALAATFALGQLEAHMGNF 290 (435)
Q Consensus 223 a~~la~~~~~~G~y~eAe~ly~rAL~I~~~----~~~--~--~~~~~l~----~~~~~~~~~~l~~l~nLa~ly~~qG~y 290 (435)
..-.|.+++.+|+|++|...|+.-+.=-.+ ... . ......+ ..+.+|+. +-..++|.|..+...|+|
T Consensus 113 l~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~-syel~yN~Ac~~i~~gky 191 (652)
T KOG2376|consen 113 LELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPED-SYELLYNTACILIENGKY 191 (652)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcc-hHHHHHHHHHHHHhcccH
Confidence 334578889999999999999987321000 000 0 0000000 00011211 223567999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhCCCChh-------HHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchh
Q 013867 291 GDAEEILTRTLTKTEELFGSHHPK-------VGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVE 363 (435)
Q Consensus 291 ~eAe~l~~rAL~I~e~~lG~~HP~-------va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a 363 (435)
++|+++++.|+.|..+.|-.+.-. ++++-.-||.+|+.+|+-++| -..|...+ +....|.|..+
T Consensus 192 ~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea------~~iy~~~i---~~~~~D~~~~A 262 (652)
T KOG2376|consen 192 NQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEA------SSIYVDII---KRNPADEPSLA 262 (652)
T ss_pred HHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHH------HHHHHHHH---HhcCCCchHHH
Confidence 999999999999988887654433 788889999999999998877 46665543 34467888899
Q ss_pred hhhccHHHHHHHh
Q 013867 364 TKVDRTDIVALAR 376 (435)
Q Consensus 364 ~~l~nla~~~~a~ 376 (435)
...||+-.+-..+
T Consensus 263 v~~NNLva~~~d~ 275 (652)
T KOG2376|consen 263 VAVNNLVALSKDQ 275 (652)
T ss_pred HHhcchhhhcccc
Confidence 9999998886655
No 93
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.26 E-value=8.9e-06 Score=62.07 Aligned_cols=90 Identities=22% Similarity=0.279 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCC
Q 013867 276 ATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAP 355 (435)
Q Consensus 276 ~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~ 355 (435)
++.++|..|..+|+|++|...+++++.+. +++| .++.++|.+|..+|++++| ..+|++++.+..
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----~~~~---~~~~~~~~~~~~~~~~~~a------~~~~~~~~~~~~-- 65 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELD-----PDNA---DAYYNLAAAYYKLGKYEEA------LEDYEKALELDP-- 65 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcC-----CccH---HHHHHHHHHHHHHHHHHHH------HHHHHHHHhCCC--
Confidence 35789999999999999999999998862 3343 7789999999999998776 889999988752
Q ss_pred CCCCCchhhhhccHHHHHHHhcCHHHHhhHh
Q 013867 356 PLESEGVETKVDRTDIVALARGGYAEALSVQ 386 (435)
Q Consensus 356 ~~~hp~~a~~l~nla~~~~a~G~yaeal~~~ 386 (435)
.++ ....+++.++..+|++.+|....
T Consensus 66 --~~~---~~~~~~~~~~~~~~~~~~a~~~~ 91 (100)
T cd00189 66 --DNA---KAYYNLGLAYYKLGKYEEALEAY 91 (100)
T ss_pred --cch---hHHHHHHHHHHHHHhHHHHHHHH
Confidence 222 45667888999999999887665
No 94
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.26 E-value=3.7e-06 Score=64.20 Aligned_cols=60 Identities=20% Similarity=0.297 Sum_probs=54.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 279 ALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 279 nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
.+|..|..+|+|++|+..|++++. .+|+-...+..+|.+|..+|++++| +..|++++++.
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~--------~~P~~~~a~~~lg~~~~~~g~~~~A------~~~~~~a~~~~ 61 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALK--------QDPDNPEAWYLLGRILYQQGRYDEA------LAYYERALELD 61 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHC--------CSTTHHHHHHHHHHHHHHTT-HHHH------HHHHHHHHHHS
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHH--------HCCCCHHHHHHHHHHHHHcCCHHHH------HHHHHHHHHHC
Confidence 579999999999999999999996 5699999999999999999998877 89999999875
No 95
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.24 E-value=6.6e-05 Score=85.02 Aligned_cols=62 Identities=10% Similarity=0.049 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013867 222 AALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTL 301 (435)
Q Consensus 222 ~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL 301 (435)
+...+|.+|.++|++++|...|+|+|++ . + + ...++||+|-.|..+ +.++|+.++.+|+
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~---D-----~----------~--n~~aLNn~AY~~ae~-dL~KA~~m~~KAV 176 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKA---D-----R----------D--NPEIVKKLATSYEEE-DKEKAITYLKKAI 176 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhc---C-----c----------c--cHHHHHHHHHHHHHh-hHHHHHHHHHHHH
Confidence 6677899999999999999999999999 1 1 1 125789999999999 9999999999997
Q ss_pred HHH
Q 013867 302 TKT 304 (435)
Q Consensus 302 ~I~ 304 (435)
..+
T Consensus 177 ~~~ 179 (906)
T PRK14720 177 YRF 179 (906)
T ss_pred HHH
Confidence 653
No 96
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.23 E-value=0.00012 Score=76.36 Aligned_cols=184 Identities=13% Similarity=0.077 Sum_probs=120.2
Q ss_pred ChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 013867 78 SDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYL 157 (435)
Q Consensus 78 s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~ 157 (435)
..|+|++|...|+.+| .++.+.-..+.|+|..+..+|+.++|+++|-+--.|....
T Consensus 502 ~ngd~dka~~~ykeal--------~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn---------------- 557 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEAL--------NNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNN---------------- 557 (840)
T ss_pred ecCcHHHHHHHHHHHH--------cCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhh----------------
Confidence 3577888888888888 3445677788888888888888888888887653322111
Q ss_pred hcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchH
Q 013867 158 QLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFL 237 (435)
Q Consensus 158 ~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~ 237 (435)
++ +.-.++++++.-. .-++||..+.+... + -|+.+.+...+|.+|...|+-.
T Consensus 558 -------~e-vl~qianiye~le-----------d~aqaie~~~q~~s--------l-ip~dp~ilskl~dlydqegdks 609 (840)
T KOG2003|consen 558 -------AE-VLVQIANIYELLE-----------DPAQAIELLMQANS--------L-IPNDPAILSKLADLYDQEGDKS 609 (840)
T ss_pred -------HH-HHHHHHHHHHHhh-----------CHHHHHHHHHHhcc--------c-CCCCHHHHHHHHHHhhcccchh
Confidence 11 1112333333211 22333332211110 0 1445577888999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHH
Q 013867 238 LAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGV 317 (435)
Q Consensus 238 eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~ 317 (435)
+|.++|-..-.. + +||. -+.--||.-|.+.-=+++|..+|++|--| .|.+..
T Consensus 610 qafq~~ydsyry------------f-p~ni-------e~iewl~ayyidtqf~ekai~y~ekaali--------qp~~~k 661 (840)
T KOG2003|consen 610 QAFQCHYDSYRY------------F-PCNI-------ETIEWLAAYYIDTQFSEKAINYFEKAALI--------QPNQSK 661 (840)
T ss_pred hhhhhhhhcccc------------c-Ccch-------HHHHHHHHHHHhhHHHHHHHHHHHHHHhc--------CccHHH
Confidence 999887544322 1 2332 23456788888888888899999998766 588888
Q ss_pred HHHHHHHHHHHhhhhhhhhhhHHHHHHHHH
Q 013867 318 VLTCLALMFRNKAMQEHSSALLIQEGLYRR 347 (435)
Q Consensus 318 ~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~r 347 (435)
.---+|..+++.|.|.+| ..+|+.
T Consensus 662 wqlmiasc~rrsgnyqka------~d~yk~ 685 (840)
T KOG2003|consen 662 WQLMIASCFRRSGNYQKA------FDLYKD 685 (840)
T ss_pred HHHHHHHHHHhcccHHHH------HHHHHH
Confidence 888999999999996555 455554
No 97
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=98.22 E-value=1.6e-05 Score=91.06 Aligned_cols=184 Identities=16% Similarity=0.099 Sum_probs=139.8
Q ss_pred cCCCCChHHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013867 53 INGLNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQ 132 (435)
Q Consensus 53 ~~g~~~~~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ 132 (435)
+.|-.||+++..+--+|..+-+ .|++++|+.+-.++.-|.++.+|.+||.+...+.||+...+...+-..|...+
T Consensus 964 v~~~~h~~~~~~~~~La~l~~~----~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~- 1038 (1236)
T KOG1839|consen 964 VMGVLHPEVASKYRSLAKLSNR----LGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSL- 1038 (1236)
T ss_pred hhhhcchhHHHHHHHHHHHHhh----hcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhH-
Confidence 5688999999999999999854 67999999999999999999999999999999999995544444222222111
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccc
Q 013867 133 KVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGL 212 (435)
Q Consensus 133 ral~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~ 212 (435)
.+++.+..+ ..|.+||.
T Consensus 1039 -----------------------------------------------------------~ra~~l~~L--s~ge~hP~-- 1055 (1236)
T KOG1839|consen 1039 -----------------------------------------------------------NRALKLKLL--SSGEDHPP-- 1055 (1236)
T ss_pred -----------------------------------------------------------HHHHHhhcc--ccCCCCCc--
Confidence 122222221 13344543
Q ss_pred cccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHH-HHHHHHHHHHHcCCHH
Q 013867 213 QEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALA-ATFALGQLEAHMGNFG 291 (435)
Q Consensus 213 ~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~-~l~nLa~ly~~qG~y~ 291 (435)
...+-.++..+++..++|+.|..+-+.|+++-++.. | |.+...+ +.+-++.++..+|.|.
T Consensus 1056 ------~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~--------g-----~~~l~~~~~~~~~a~l~~s~~dfr 1116 (1236)
T KOG1839|consen 1056 ------TALSFINLELLLLGVEEADTALRYLESALAKNKKVL--------G-----PKELETALSYHALARLFESMKDFR 1116 (1236)
T ss_pred ------hhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhc--------C-----ccchhhhhHHHHHHHHHhhhHHHH
Confidence 334445677788999999999999999999854433 3 1111222 4567899999999999
Q ss_pred HHHHHHHHHHHHHHHhhCCCChhHHHHHHHHH
Q 013867 292 DAEEILTRTLTKTEELFGSHHPKVGVVLTCLA 323 (435)
Q Consensus 292 eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA 323 (435)
.|....+.+..|+.+.+|++|+++..+-..+=
T Consensus 1117 ~al~~ek~t~~iy~~qlg~~hsrt~~S~~~~~ 1148 (1236)
T KOG1839|consen 1117 NALEHEKVTYGIYKEQLGPDHSRTKESSEWLN 1148 (1236)
T ss_pred HHHHHHhhHHHHHHHhhCCCcccchhhHHHHH
Confidence 99999999999999999999999998877765
No 98
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.22 E-value=5.7e-06 Score=66.74 Aligned_cols=84 Identities=23% Similarity=0.270 Sum_probs=61.0
Q ss_pred HhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCC
Q 013867 232 ATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSH 311 (435)
Q Consensus 232 ~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~ 311 (435)
.+|+|++|+.+|+++++.. .. . + ....+.+||.+|..+|+|++|.+++++ +.+ ++.
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~---~~---~---------~---~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~-----~~~ 56 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELD---PT---N---------P---NSAYLYNLAQCYFQQGKYEEAIELLQK-LKL-----DPS 56 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHH---CG---T---------H---HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH-----HHC
T ss_pred CCccHHHHHHHHHHHHHHC---CC---C---------h---hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC-----CCC
Confidence 3799999999999999982 10 0 1 113466799999999999999999999 332 234
Q ss_pred ChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHH
Q 013867 312 HPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRA 348 (435)
Q Consensus 312 HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rA 348 (435)
|++ ...-+|..|..+|+|++| ...|++|
T Consensus 57 ~~~---~~~l~a~~~~~l~~y~eA------i~~l~~~ 84 (84)
T PF12895_consen 57 NPD---IHYLLARCLLKLGKYEEA------IKALEKA 84 (84)
T ss_dssp HHH---HHHHHHHHHHHTT-HHHH------HHHHHHH
T ss_pred CHH---HHHHHHHHHHHhCCHHHH------HHHHhcC
Confidence 444 444569999999998877 7777765
No 99
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.17 E-value=2.2e-05 Score=76.64 Aligned_cols=127 Identities=17% Similarity=0.143 Sum_probs=98.9
Q ss_pred hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013867 219 TGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILT 298 (435)
Q Consensus 219 ~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~ 298 (435)
...++..++......|+|.+|+..++||..+. ++. -...+.||..|...|++++|..-|.
T Consensus 99 d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~--------p~d------------~~~~~~lgaaldq~Gr~~~Ar~ay~ 158 (257)
T COG5010 99 DRELLAAQGKNQIRNGNFGEAVSVLRKAARLA--------PTD------------WEAWNLLGAALDQLGRFDEARRAYR 158 (257)
T ss_pred cHHHHHHHHHHHHHhcchHHHHHHHHHHhccC--------CCC------------hhhhhHHHHHHHHccChhHHHHHHH
Confidence 33455557777889999999999999999871 111 1356889999999999999999999
Q ss_pred HHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcC
Q 013867 299 RTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGG 378 (435)
Q Consensus 299 rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~ 378 (435)
||++.. ++- ...+||||..|.-+|+++.| +.++.++-.--.. + -...+|++.+...+|+
T Consensus 159 qAl~L~-----~~~---p~~~nNlgms~~L~gd~~~A------~~lll~a~l~~~a------d-~~v~~NLAl~~~~~g~ 217 (257)
T COG5010 159 QALELA-----PNE---PSIANNLGMSLLLRGDLEDA------ETLLLPAYLSPAA------D-SRVRQNLALVVGLQGD 217 (257)
T ss_pred HHHHhc-----cCC---chhhhhHHHHHHHcCCHHHH------HHHHHHHHhCCCC------c-hHHHHHHHHHHhhcCC
Confidence 999863 233 46789999999999998877 7888776543321 1 3467899999999999
Q ss_pred HHHHhhHh
Q 013867 379 YAEALSVQ 386 (435)
Q Consensus 379 yaeal~~~ 386 (435)
..+|..+-
T Consensus 218 ~~~A~~i~ 225 (257)
T COG5010 218 FREAEDIA 225 (257)
T ss_pred hHHHHhhc
Confidence 98887764
No 100
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.16 E-value=0.00073 Score=75.29 Aligned_cols=91 Identities=14% Similarity=0.162 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhH--HHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhc
Q 013867 276 ATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKV--GVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLK 353 (435)
Q Consensus 276 ~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~v--a~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k 353 (435)
-+.+++.+|..-|+|++|.++|.+... ||.. +....++|.+|..+|.|++| ...|+++|...
T Consensus 416 L~~d~a~al~~~~~~~~Al~~l~~i~~---------~~~~~~~~vw~~~a~c~~~l~e~e~A------~e~y~kvl~~~- 479 (895)
T KOG2076|consen 416 LYLDLADALTNIGKYKEALRLLSPITN---------REGYQNAFVWYKLARCYMELGEYEEA------IEFYEKVLILA- 479 (895)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHhc---------CccccchhhhHHHHHHHHHHhhHHHH------HHHHHHHHhcC-
Confidence 456899999999999999999998864 3332 66889999999999998776 78888888654
Q ss_pred CCCCCCCchhhhhccHHHHHHHhcCHHHHhhHhhh
Q 013867 354 APPLESEGVETKVDRTDIVALARGGYAEALSVQQN 388 (435)
Q Consensus 354 ~~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~~~ 388 (435)
|+|-|+.. -|+.++..+|+.++|+..-++
T Consensus 480 ---p~~~D~Ri---~Lasl~~~~g~~EkalEtL~~ 508 (895)
T KOG2076|consen 480 ---PDNLDARI---TLASLYQQLGNHEKALETLEQ 508 (895)
T ss_pred ---CCchhhhh---hHHHHHHhcCCHHHHHHHHhc
Confidence 66666443 367899999999999987644
No 101
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.16 E-value=0.00014 Score=73.34 Aligned_cols=75 Identities=12% Similarity=0.071 Sum_probs=49.0
Q ss_pred CCChHHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHH--HHHHHHHHHHcCCHHHHHHHHHH
Q 013867 56 LNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGIS--LLAMSTLLYESGNYVEAIEKLQK 133 (435)
Q Consensus 56 ~~~~~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~--l~nLa~ly~~qGky~eA~~l~~r 133 (435)
.+-|.++..+-.|-.-| ..+-..|-......++........+|--+-.. -+.||..|...|-+.+|++.++.
T Consensus 175 a~~p~l~kaLFey~fyh------enDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~Aekqlqs 248 (478)
T KOG1129|consen 175 AERPTLVKALFEYLFYH------ENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQS 248 (478)
T ss_pred ccChHHHHHHHHHHHHh------hhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHH
Confidence 35677777777766555 12455555555555554443333444333333 46799999999999999999999
Q ss_pred HHH
Q 013867 134 VEN 136 (435)
Q Consensus 134 al~ 136 (435)
+++
T Consensus 249 sL~ 251 (478)
T KOG1129|consen 249 SLT 251 (478)
T ss_pred Hhh
Confidence 864
No 102
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.15 E-value=0.00014 Score=76.42 Aligned_cols=205 Identities=17% Similarity=0.149 Sum_probs=127.3
Q ss_pred HHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHH
Q 013867 65 MINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGV 144 (435)
Q Consensus 65 m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i 144 (435)
+|.+|..+.... +-.+-...|.++..+. + .-..+|+..|.++.-.++|++|+.=|++++.+....
T Consensus 363 yI~~a~~y~d~~----~~~~~~~~F~~A~~ld-----p---~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~--- 427 (606)
T KOG0547|consen 363 YIKRAAAYADEN----QSEKMWKDFNKAEDLD-----P---ENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPEN--- 427 (606)
T ss_pred HHHHHHHHhhhh----ccHHHHHHHHHHHhcC-----C---CCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhh---
Confidence 666666664322 2334445555555433 2 233457777777777777777777777776554332
Q ss_pred HHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHH
Q 013867 145 RVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAAL 224 (435)
Q Consensus 145 ~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~ 224 (435)
+..+.+.|.-++.... ..+... .+..+++ ++ |.-+.+.+
T Consensus 428 --------------------~~~~iQl~~a~Yr~~k---~~~~m~--~Fee~kk--------kF--------P~~~Evy~ 466 (606)
T KOG0547|consen 428 --------------------AYAYIQLCCALYRQHK---IAESMK--TFEEAKK--------KF--------PNCPEVYN 466 (606)
T ss_pred --------------------hHHHHHHHHHHHHHHH---HHHHHH--HHHHHHH--------hC--------CCCchHHH
Confidence 1122333333332211 222222 2333332 22 23345566
Q ss_pred HHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHH--HHHHHHHcCCHHHHHHHHHHHHH
Q 013867 225 SYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFA--LGQLEAHMGNFGDAEEILTRTLT 302 (435)
Q Consensus 225 ~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~n--La~ly~~qG~y~eAe~l~~rAL~ 302 (435)
-+|+++..|++|++|+..|.+|++.- .. .+.-.++ .+.+.+ +.+ .+-.+++++|+.|+++|++
T Consensus 467 ~fAeiLtDqqqFd~A~k~YD~ai~LE---~~-~~~~~v~----------~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e 531 (606)
T KOG0547|consen 467 LFAEILTDQQQFDKAVKQYDKAIELE---PR-EHLIIVN----------AAPLVHKALLV-LQWKEDINQAENLLRKAIE 531 (606)
T ss_pred HHHHHHhhHHhHHHHHHHHHHHHhhc---cc-ccccccc----------chhhhhhhHhh-hchhhhHHHHHHHHHHHHc
Confidence 68999999999999999999999982 21 1122222 122322 333 3345999999999999998
Q ss_pred HHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcC
Q 013867 303 KTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKA 354 (435)
Q Consensus 303 I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~ 354 (435)
+ .|.-=..+..||.+--+||+.++| ..||++++..-++
T Consensus 532 ~--------Dpkce~A~~tlaq~~lQ~~~i~eA------ielFEksa~lArt 569 (606)
T KOG0547|consen 532 L--------DPKCEQAYETLAQFELQRGKIDEA------IELFEKSAQLART 569 (606)
T ss_pred c--------CchHHHHHHHHHHHHHHHhhHHHH------HHHHHHHHHHHHh
Confidence 7 688888999999999999997766 8999999988764
No 103
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.14 E-value=2.7e-05 Score=76.94 Aligned_cols=103 Identities=16% Similarity=0.215 Sum_probs=83.0
Q ss_pred HHHHHHHH-HHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013867 222 AALSYGEY-LHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRT 300 (435)
Q Consensus 222 ~a~~la~~-~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rA 300 (435)
.....|.- +..+|+|++|+..|++.+..+ ++. .. .-.+..-||.+|..+|+|++|...|+++
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y------P~s-~~----------a~~A~y~LG~~y~~~g~~~~A~~~f~~v 206 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKY------PDS-TY----------QPNANYWLGQLNYNKGKKDDAAYYFASV 206 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHC------cCC-cc----------hHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33444543 366899999999999999882 111 11 1246789999999999999999999999
Q ss_pred HHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 301 LTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 301 L~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
+..+ |+||.+..++..+|.+|..+|++++| ...|++.++-+
T Consensus 207 v~~y-----P~s~~~~dAl~klg~~~~~~g~~~~A------~~~~~~vi~~y 247 (263)
T PRK10803 207 VKNY-----PKSPKAADAMFKVGVIMQDKGDTAKA------KAVYQQVIKKY 247 (263)
T ss_pred HHHC-----CCCcchhHHHHHHHHHHHHcCCHHHH------HHHHHHHHHHC
Confidence 8876 79999999999999999999998776 78888887766
No 104
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.13 E-value=9.2e-06 Score=62.01 Aligned_cols=59 Identities=15% Similarity=0.232 Sum_probs=49.3
Q ss_pred HHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 013867 225 SYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTK 303 (435)
Q Consensus 225 ~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I 303 (435)
.+|..+..+|+|++|+..|+++++. . |+ ...++..||.++..+|+|++|..+|++++.+
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~-----------~-------P~--~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQ-----------D-------PD--NPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCC-----------S-------TT--HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHH-----------C-------CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4577889999999999999999966 1 11 2357889999999999999999999999976
No 105
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.12 E-value=2.4e-05 Score=77.84 Aligned_cols=88 Identities=19% Similarity=0.222 Sum_probs=75.1
Q ss_pred HHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCC
Q 013867 231 HATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGS 310 (435)
Q Consensus 231 ~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~ 310 (435)
..-++|.+|+..|.+||++ . + .- ..-+||-|.+|.+.|.|+.|.+=.+.||.|
T Consensus 92 m~~~~Y~eAv~kY~~AI~l---~-----P-~n-----------AVyycNRAAAy~~Lg~~~~AVkDce~Al~i------- 144 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIEL---D-----P-TN-----------AVYYCNRAAAYSKLGEYEDAVKDCESALSI------- 144 (304)
T ss_pred HHhhhHHHHHHHHHHHHhc---C-----C-Cc-----------chHHHHHHHHHHHhcchHHHHHHHHHHHhc-------
Confidence 4568899999999999988 1 1 10 123689999999999999999999999998
Q ss_pred CChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 311 HHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 311 ~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
.|....++.-||.+|..+|++++| +.-|++||+|-
T Consensus 145 -Dp~yskay~RLG~A~~~~gk~~~A------~~aykKaLeld 179 (304)
T KOG0553|consen 145 -DPHYSKAYGRLGLAYLALGKYEEA------IEAYKKALELD 179 (304)
T ss_pred -ChHHHHHHHHHHHHHHccCcHHHH------HHHHHhhhccC
Confidence 688899999999999999998876 77799999886
No 106
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.11 E-value=0.00026 Score=73.89 Aligned_cols=230 Identities=18% Similarity=0.206 Sum_probs=142.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcC-CC-cchHHHHHHHHHH-------HHhcCCCc
Q 013867 113 AMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLG-QD-DTSSVVADKCLQL-------CEKHKPEN 183 (435)
Q Consensus 113 nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~g-~~-~~A~~~~~~~~~l-------~~~~~~~~ 183 (435)
|-+.-|.++|+|+.|++.++--..-. -....++.+||-.++.-+| .+ ..|+.+++..+++ +.+++...
T Consensus 424 ~ka~~~lk~~d~~~aieilkv~~~kd---nk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~ 500 (840)
T KOG2003|consen 424 NKAGELLKNGDIEGAIEILKVFEKKD---NKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIA 500 (840)
T ss_pred hHHHHHHhccCHHHHHHHHHHHHhcc---chhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCcee
Confidence 45667889999999999876321110 0112334567766655544 33 4455555544433 11112111
Q ss_pred hhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcc
Q 013867 184 YKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLG 263 (435)
Q Consensus 184 ~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~ 263 (435)
|. -.-..+|..-.-+.+..+ ..|+ .+..|+|..+..+|+.++|.++|-+--.|.. .
T Consensus 501 f~----ngd~dka~~~ykeal~nd--------asc~-ealfniglt~e~~~~ldeald~f~klh~il~---n-------- 556 (840)
T KOG2003|consen 501 FA----NGDLDKAAEFYKEALNND--------ASCT-EALFNIGLTAEALGNLDEALDCFLKLHAILL---N-------- 556 (840)
T ss_pred ee----cCcHHHHHHHHHHHHcCc--------hHHH-HHHHHhcccHHHhcCHHHHHHHHHHHHHHHH---h--------
Confidence 10 000111111111222211 1333 4567788889999999999999999999942 1
Q ss_pred cccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhh-------
Q 013867 264 SCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSS------- 336 (435)
Q Consensus 264 ~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~------- 336 (435)
.+..+.-++.+|..+.+-.+|.++|.|+.. +=|+.|.+ |..||.+|.+.|+-.+|-
T Consensus 557 ---------n~evl~qianiye~led~aqaie~~~q~~s-----lip~dp~i---lskl~dlydqegdksqafq~~ydsy 619 (840)
T KOG2003|consen 557 ---------NAEVLVQIANIYELLEDPAQAIELLMQANS-----LIPNDPAI---LSKLADLYDQEGDKSQAFQCHYDSY 619 (840)
T ss_pred ---------hHHHHHHHHHHHHHhhCHHHHHHHHHHhcc-----cCCCCHHH---HHHHHHHhhcccchhhhhhhhhhcc
Confidence 234577899999999999999999999875 34677754 678899999999877761
Q ss_pred --------------hhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHHHhhHh
Q 013867 337 --------------ALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQ 386 (435)
Q Consensus 337 --------------~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~ 386 (435)
+|-.--.+.++++..++...+-.|.+.+.---.+.+....|+|..|+.++
T Consensus 620 ryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~y 683 (840)
T KOG2003|consen 620 RYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLY 683 (840)
T ss_pred cccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 22233456678888886545556664433333677788899999997765
No 107
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.10 E-value=1.2e-05 Score=84.36 Aligned_cols=74 Identities=11% Similarity=-0.034 Sum_probs=64.2
Q ss_pred CCCChHHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013867 55 GLNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKV 134 (435)
Q Consensus 55 g~~~~~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ra 134 (435)
.+.-|+.+...+|+|..|. .+|+|++|+.+|+++|++. |+++....+++|+|.+|..+|++++|++.|++|
T Consensus 68 ~~~dP~~a~a~~NLG~AL~----~lGryeEAIa~f~rALeL~-----Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrA 138 (453)
T PLN03098 68 SEADVKTAEDAVNLGLSLF----SKGRVKDALAQFETALELN-----PNPDEAQAAYYNKACCHAYREEGKKAADCLRTA 138 (453)
T ss_pred ccCCCCCHHHHHHHHHHHH----HcCCHHHHHHHHHHHHhhC-----CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3456778889999999994 3689999999999999876 566666678999999999999999999999999
Q ss_pred HHh
Q 013867 135 ENF 137 (435)
Q Consensus 135 l~i 137 (435)
+++
T Consensus 139 Lel 141 (453)
T PLN03098 139 LRD 141 (453)
T ss_pred HHh
Confidence 875
No 108
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.08 E-value=0.00056 Score=69.92 Aligned_cols=101 Identities=18% Similarity=0.216 Sum_probs=73.9
Q ss_pred hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHc-----CCHHHH
Q 013867 219 TGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHM-----GNFGDA 293 (435)
Q Consensus 219 ~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~q-----G~y~eA 293 (435)
+..-+..+|.+|++.|+.+.|-+-|++|..++.. .| .-+| .+-+|...|..+... |.-=+|
T Consensus 245 ~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~-~g----drmg---------qv~al~g~Akc~~~~r~~~k~~~Cra 310 (518)
T KOG1941|consen 245 QARCLLCFADIYRSRGDLERAFRRYEQAMGTMAS-LG----DRMG---------QVEALDGAAKCLETLRLQNKICNCRA 310 (518)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhh-hh----hhHH---------HHHHHHHHHHHHHHHHHhhcccccch
Confidence 4455677899999999999999999999999642 22 1333 234455555444333 333459
Q ss_pred HHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhh
Q 013867 294 EEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHS 335 (435)
Q Consensus 294 e~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A 335 (435)
.++-+|+++|.+.+ |.+| .|.....-||.+|+.+|..++-
T Consensus 311 le~n~r~levA~~I-G~K~-~vlK~hcrla~iYrs~gl~d~~ 350 (518)
T KOG1941|consen 311 LEFNTRLLEVASSI-GAKL-SVLKLHCRLASIYRSKGLQDEL 350 (518)
T ss_pred hHHHHHHHHHHHHh-hhhH-HHHHHHHHHHHHHHhccchhHH
Confidence 99999999999875 6666 4777888999999999987764
No 109
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.08 E-value=0.00092 Score=68.38 Aligned_cols=260 Identities=15% Similarity=0.095 Sum_probs=159.2
Q ss_pred HHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHH
Q 013867 64 QMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILG 143 (435)
Q Consensus 64 ~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~ 143 (435)
+-+.-|+.+.. +..|.+|+....+.|.-..+. .+.-.+|-.+.++..++|+|.++...---.++...
T Consensus 8 ~q~~~g~~Ly~----s~~~~~al~~w~~~L~~l~~~-----~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~---- 74 (518)
T KOG1941|consen 8 KQIEKGLQLYQ----SNQTEKALQVWTKVLEKLSDL-----MGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTAR---- 74 (518)
T ss_pred HHHHHHHhHhc----CchHHHHHHHHHHHHHHHHHH-----HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHH----
Confidence 33444555522 347899999999998765333 45667788899999999999998643322111110
Q ss_pred HHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHH
Q 013867 144 VRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAA 223 (435)
Q Consensus 144 i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a 223 (435)
.++ + +...+...+++.... +-+..+-+++.- -+..-.||.+-+-. .-+.+.
T Consensus 75 ----~~~-----------d--s~~~~ea~lnlar~~--------e~l~~f~kt~~y--~k~~l~lpgt~~~~--~~gq~~ 125 (518)
T KOG1941|consen 75 ----ELE-----------D--SDFLLEAYLNLARSN--------EKLCEFHKTISY--CKTCLGLPGTRAGQ--LGGQVS 125 (518)
T ss_pred ----HHH-----------H--HHHHHHHHHHHHHHH--------HHHHHhhhHHHH--HHHHhcCCCCCccc--ccchhh
Confidence 010 0 001111112221111 222233333332 12222333321111 113455
Q ss_pred HHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 013867 224 LSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTK 303 (435)
Q Consensus 224 ~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I 303 (435)
.+++..+-.+|.|+++.+.|+.|+.|..+. +++.+ .+.....||.+|....+|++|.-+..+|++|
T Consensus 126 l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~----~D~~L----------Elqvcv~Lgslf~~l~D~~Kal~f~~kA~~l 191 (518)
T KOG1941|consen 126 LSMGNAHLGLSVFQKALESFEKALRYAHNN----DDAML----------ELQVCVSLGSLFAQLKDYEKALFFPCKAAEL 191 (518)
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHhhcc----CCcee----------eeehhhhHHHHHHHHHhhhHHhhhhHhHHHH
Confidence 556777778899999999999999995321 22222 2455679999999999999999999999999
Q ss_pred HHHhh-CCCChh-HHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHH
Q 013867 304 TEELF-GSHHPK-VGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAE 381 (435)
Q Consensus 304 ~e~~l-G~~HP~-va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yae 381 (435)
-..+- |.-|.. -+.++..||..|+.+|+.-.| ....+.|..+--..| |.+--+..+--++.+|..+|+.+.
T Consensus 192 v~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA------~e~C~Ea~klal~~G-dra~~arc~~~~aDIyR~~gd~e~ 264 (518)
T KOG1941|consen 192 VNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDA------MECCEEAMKLALQHG-DRALQARCLLCFADIYRSRGDLER 264 (518)
T ss_pred HHhcCcCchhHHHHHHHHHHHHHHHHHhcccccH------HHHHHHHHHHHHHhC-ChHHHHHHHHHHHHHHHhcccHhH
Confidence 77654 555555 588999999999999997665 677777777763222 223345566667888888885544
Q ss_pred HhhHh
Q 013867 382 ALSVQ 386 (435)
Q Consensus 382 al~~~ 386 (435)
+...+
T Consensus 265 af~rY 269 (518)
T KOG1941|consen 265 AFRRY 269 (518)
T ss_pred HHHHH
Confidence 44433
No 110
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.07 E-value=1e-05 Score=84.67 Aligned_cols=72 Identities=17% Similarity=0.069 Sum_probs=61.9
Q ss_pred cccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHH-HHHHHHHHHHHHcCCHHHH
Q 013867 215 EEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVAL-AATFALGQLEAHMGNFGDA 293 (435)
Q Consensus 215 ~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l-~~l~nLa~ly~~qG~y~eA 293 (435)
..|++....+|+|..|..+|+|++|+..|++||++- |++... .+++|+|.+|..+|++++|
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~------------------Pd~aeA~~A~yNLAcaya~LGr~dEA 131 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELN------------------PNPDEAQAAYYNKACCHAYREEGKKA 131 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC------------------CCchHHHHHHHHHHHHHHHcCCHHHH
Confidence 358888999999999999999999999999999991 111122 3689999999999999999
Q ss_pred HHHHHHHHHHH
Q 013867 294 EEILTRTLTKT 304 (435)
Q Consensus 294 e~l~~rAL~I~ 304 (435)
...|++|+++.
T Consensus 132 la~LrrALels 142 (453)
T PLN03098 132 ADCLRTALRDY 142 (453)
T ss_pred HHHHHHHHHhc
Confidence 99999999983
No 111
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=9.6e-05 Score=76.32 Aligned_cols=283 Identities=15% Similarity=0.084 Sum_probs=169.6
Q ss_pred HHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 013867 60 PVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKN 139 (435)
Q Consensus 60 ~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e 139 (435)
..|...-..+-.+. ++-+|.+|+..|..|++.. |+-+.-+.|-+..|.--|+|++|.--+++...+..
T Consensus 47 ~~Ae~~k~~gn~~y----k~k~Y~nal~~yt~Ai~~~--------pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd 114 (486)
T KOG0550|consen 47 QQAEEAKEEGNAFY----KQKTYGNALKNYTFAIDMC--------PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKD 114 (486)
T ss_pred HHHHHHHhhcchHH----HHhhHHHHHHHHHHHHHhC--------ccchhhhchhHHHHHHHHhHhhcccchhhheecCC
Confidence 34555555554443 4558999999999999665 45588999999999999999999999988765543
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCCcchHHHHH--------HHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCccc
Q 013867 140 SILGVRVAAMEALAGLYLQLGQDDTSSVVAD--------KCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESG 211 (435)
Q Consensus 140 ~~L~i~vaale~L~g~~~~~g~~~~A~~~~~--------~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a 211 (435)
...... ....-++...+.-.+|+...+ +.+..+++--+.++. ++-....+-++-..-...++.++|
T Consensus 115 ~~~k~~----~r~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~--~pac~~a~~lka~cl~~~~~~~~a 188 (486)
T KOG0550|consen 115 GFSKGQ----LREGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSR--EPACFKAKLLKAECLAFLGDYDEA 188 (486)
T ss_pred Cccccc----cchhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccC--CchhhHHHHhhhhhhhhcccchhH
Confidence 211000 000001111111111111111 111111111111111 122233333332222234555444
Q ss_pred cccc------ccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHH
Q 013867 212 LQEE------EGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEA 285 (435)
Q Consensus 212 ~~~~------~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~ 285 (435)
.... ++....+..--+.+++..++.++|...|+++|.. + ++|...+...|.|..+ -..-+-|+-..
T Consensus 189 ~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l-----d-pdh~~sk~~~~~~k~l--e~~k~~gN~~f 260 (486)
T KOG0550|consen 189 QSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRL-----D-PDHQKSKSASMMPKKL--EVKKERGNDAF 260 (486)
T ss_pred HHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhcc-----C-hhhhhHHhHhhhHHHH--HHHHhhhhhHh
Confidence 3211 1222233333456778889999999999999976 2 3343333323333321 22334577888
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhhCCCChh-HHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhh
Q 013867 286 HMGNFGDAEEILTRTLTKTEELFGSHHPK-VGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVET 364 (435)
Q Consensus 286 ~qG~y~eAe~l~~rAL~I~e~~lG~~HP~-va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~ 364 (435)
++|+|.+|.++|+.||.|-. +|-+ ++-.|.|.|.++.+.|+..+| ..-+..|+.|- |....
T Consensus 261 k~G~y~~A~E~Yteal~idP-----~n~~~naklY~nra~v~~rLgrl~ea------isdc~~Al~iD-------~syik 322 (486)
T KOG0550|consen 261 KNGNYRKAYECYTEALNIDP-----SNKKTNAKLYGNRALVNIRLGRLREA------ISDCNEALKID-------SSYIK 322 (486)
T ss_pred hccchhHHHHHHHHhhcCCc-----cccchhHHHHHHhHhhhcccCCchhh------hhhhhhhhhcC-------HHHHH
Confidence 99999999999999999854 4544 677899999999999997766 77788888875 34456
Q ss_pred hhccHHHHHHHhcCHHHHhhHh
Q 013867 365 KVDRTDIVALARGGYAEALSVQ 386 (435)
Q Consensus 365 ~l~nla~~~~a~G~yaeal~~~ 386 (435)
.+.-++.+++..++|++|-.-+
T Consensus 323 all~ra~c~l~le~~e~AV~d~ 344 (486)
T KOG0550|consen 323 ALLRRANCHLALEKWEEAVEDY 344 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6777888888888888885533
No 112
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.03 E-value=0.00011 Score=78.28 Aligned_cols=208 Identities=15% Similarity=0.137 Sum_probs=132.6
Q ss_pred CCCChHHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013867 55 GLNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKV 134 (435)
Q Consensus 55 g~~~~~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ra 134 (435)
--+-|..|..=-.||++++.- ++=..||.-+++||++. |.-...|-+||.-|..+|.=.+|..++.+=
T Consensus 312 VkqdP~haeAW~~LG~~qaEN----E~E~~ai~AL~rcl~Ld--------P~NleaLmaLAVSytNeg~q~~Al~~L~~W 379 (579)
T KOG1125|consen 312 VKQDPQHAEAWQKLGITQAEN----ENEQNAISALRRCLELD--------PTNLEALMALAVSYTNEGLQNQALKMLDKW 379 (579)
T ss_pred HhhChHHHHHHHHhhhHhhhc----cchHHHHHHHHHHHhcC--------CccHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 356677788888899998543 45679999999999766 667889999999999999999999999775
Q ss_pred HHhhhh--hHHH--------------HHHHHHHHHHHHHh---cCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHH
Q 013867 135 ENFKNS--ILGV--------------RVAAMEALAGLYLQ---LGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRAN 195 (435)
Q Consensus 135 l~i~e~--~L~i--------------~vaale~L~g~~~~---~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~ 195 (435)
+....+ .+.+ ....+..+.-++++ +.+....-++ +.++.++-.-. ..|+ +++.++..
T Consensus 380 i~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~Dpdv-Q~~LGVLy~ls-~efd--raiDcf~~ 455 (579)
T KOG1125|consen 380 IRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDV-QSGLGVLYNLS-GEFD--RAVDCFEA 455 (579)
T ss_pred HHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhH-HhhhHHHHhcc-hHHH--HHHHHHHH
Confidence 322110 0100 00000000000000 0111000011 12222221100 0122 22223332
Q ss_pred HHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHH
Q 013867 196 AVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALA 275 (435)
Q Consensus 196 Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~ 275 (435)
|+. - .|+.+..-+.||..+..--+++||+.-|+|||++ .++ .+.
T Consensus 456 AL~-------v---------~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL-----------qP~---------yVR 499 (579)
T KOG1125|consen 456 ALQ-------V---------KPNDYLLWNRLGATLANGNRSEEAISAYNRALQL-----------QPG---------YVR 499 (579)
T ss_pred HHh-------c---------CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc-----------CCC---------eee
Confidence 222 1 3666777888999999999999999999999999 112 345
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChh
Q 013867 276 ATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPK 314 (435)
Q Consensus 276 ~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~ 314 (435)
+-.|||.-|..+|-|+||.++|-.||.+.++..+..--.
T Consensus 500 ~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~ 538 (579)
T KOG1125|consen 500 VRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAP 538 (579)
T ss_pred eehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCC
Confidence 678999999999999999999999999999966654443
No 113
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.02 E-value=0.00018 Score=70.36 Aligned_cols=89 Identities=20% Similarity=0.151 Sum_probs=70.3
Q ss_pred hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013867 219 TGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILT 298 (435)
Q Consensus 219 ~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~ 298 (435)
...+.+-+|..|...|++++|..-|.+|++.. . .. | ..++|||..|.-.|++..|+.++.
T Consensus 133 d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~----~--~~---------p-----~~~nNlgms~~L~gd~~~A~~lll 192 (257)
T COG5010 133 DWEAWNLLGAALDQLGRFDEARRAYRQALELA----P--NE---------P-----SIANNLGMSLLLRGDLEDAETLLL 192 (257)
T ss_pred ChhhhhHHHHHHHHccChhHHHHHHHHHHHhc----c--CC---------c-----hhhhhHHHHHHHcCCHHHHHHHHH
Confidence 34556667888999999999999999999982 1 11 1 246899999999999999999998
Q ss_pred HHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhh
Q 013867 299 RTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHS 335 (435)
Q Consensus 299 rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A 335 (435)
++-. .++..+ .+..||+.+...||++++|
T Consensus 193 ~a~l-----~~~ad~---~v~~NLAl~~~~~g~~~~A 221 (257)
T COG5010 193 PAYL-----SPAADS---RVRQNLALVVGLQGDFREA 221 (257)
T ss_pred HHHh-----CCCCch---HHHHHHHHHHhhcCChHHH
Confidence 8753 334344 3568999999999997766
No 114
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.92 E-value=0.00025 Score=63.11 Aligned_cols=121 Identities=14% Similarity=0.139 Sum_probs=84.9
Q ss_pred HhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCC
Q 013867 232 ATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSH 311 (435)
Q Consensus 232 ~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~ 311 (435)
..|+++++...+++-+.-. ++. .. ...+...+|..+..+|+|++|...|++++... ++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~------~~s-~y----------a~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~-----~d 80 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDY------PSS-PY----------AALAALQLAKAAYEQGDYDEAKAALEKALANA-----PD 80 (145)
T ss_pred HCCCHHHHHHHHHHHHHHC------CCC-hH----------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-----CC
Confidence 4788888877666655441 111 11 12345679999999999999999999998832 45
Q ss_pred ChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHHHhhHhhh
Q 013867 312 HPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQQN 388 (435)
Q Consensus 312 HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~~~ 388 (435)
.+-...+...||.++..+|+|++| ...++. .++.+........++.++.++|++++|...++.
T Consensus 81 ~~l~~~a~l~LA~~~~~~~~~d~A------l~~L~~--------~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 81 PELKPLARLRLARILLQQGQYDEA------LATLQQ--------IPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHH------HHHHHh--------ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 555677788999999999997766 444432 122222333444689999999999999988743
No 115
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.91 E-value=6e-05 Score=77.46 Aligned_cols=91 Identities=11% Similarity=0.024 Sum_probs=76.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCC
Q 013867 277 TFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPP 356 (435)
Q Consensus 277 l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~ 356 (435)
+...|.-+..+|+|++|+++|++|+.+ .|+-...+.++|.+|..+|++++| +..+++|+++.
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~--------~P~~~~a~~~~a~~~~~~g~~~eA------l~~~~~Al~l~---- 66 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDL--------DPNNAELYADRAQANIKLGNFTEA------VADANKAIELD---- 66 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHH------HHHHHHHHHhC----
Confidence 456788899999999999999999974 444566889999999999998776 89999999985
Q ss_pred CCCCchhhhhccHHHHHHHhcCHHHHhhHhhh
Q 013867 357 LESEGVETKVDRTDIVALARGGYAEALSVQQN 388 (435)
Q Consensus 357 ~~hp~~a~~l~nla~~~~a~G~yaeal~~~~~ 388 (435)
|+......+++.++...|+|++|+..+..
T Consensus 67 ---P~~~~a~~~lg~~~~~lg~~~eA~~~~~~ 95 (356)
T PLN03088 67 ---PSLAKAYLRKGTACMKLEEYQTAKAALEK 95 (356)
T ss_pred ---cCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 34455677899999999999999987743
No 116
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.87 E-value=0.0042 Score=67.16 Aligned_cols=222 Identities=12% Similarity=0.088 Sum_probs=123.8
Q ss_pred hhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Q 013867 79 DESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQ 158 (435)
Q Consensus 79 ~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~ 158 (435)
.|+|++|+.+++..- ..-++....+-..|.+|...|++++|+..|+.-++....... ....+....|+..
T Consensus 17 ~g~~~~AL~~L~~~~--------~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~-Yy~~L~~~~g~~~- 86 (517)
T PF12569_consen 17 AGDYEEALEHLEKNE--------KQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYD-YYRGLEEALGLQL- 86 (517)
T ss_pred CCCHHHHHHHHHhhh--------hhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHH-HHHHHHHHHhhhc-
Confidence 589999999998744 333688999999999999999999999999987665432211 1112222333221
Q ss_pred cCCCcchHHHHHHHHHHHHhcCCCchhch---hhH-----HHHHHHHHHHH-HHhcCCCcccccccccchhHHHHHHHHH
Q 013867 159 LGQDDTSSVVADKCLQLCEKHKPENYKTY---GAV-----NSRANAVKGLV-ELAHGNLESGLQEEEGCTGSAALSYGEY 229 (435)
Q Consensus 159 ~g~~~~A~~~~~~~~~l~~~~~~~~~~ea---eal-----~~~a~Ai~~~~-~~lgg~h~~a~~~~~~~~~~~a~~la~~ 229 (435)
+..+........+..-+....+ ..++ -+| ..+...+...+ ..+ .-.++.+..++-.+
T Consensus 87 -~~~~~~~~~~~~~y~~l~~~yp--~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l-----------~KgvPslF~~lk~L 152 (517)
T PF12569_consen 87 -QLSDEDVEKLLELYDELAEKYP--RSDAPRRLPLDFLEGDEFKERLDEYLRPQL-----------RKGVPSLFSNLKPL 152 (517)
T ss_pred -ccccccHHHHHHHHHHHHHhCc--cccchhHhhcccCCHHHHHHHHHHHHHHHH-----------hcCCchHHHHHHHH
Confidence 1111101111111111111111 0000 000 00000011000 011 12234556666667
Q ss_pred HHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhC
Q 013867 230 LHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFG 309 (435)
Q Consensus 230 ~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG 309 (435)
|....+.+--+.+.+.-+.-.+....+.... ....-+|. ..+.+++-||+.|...|+|++|..+..+|++.
T Consensus 153 y~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~--~~~~~~p~-~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h------ 223 (517)
T PF12569_consen 153 YKDPEKAAIIESLVEEYVNSLESNGSFSNGD--DEEKEPPS-TLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH------ 223 (517)
T ss_pred HcChhHHHHHHHHHHHHHHhhcccCCCCCcc--ccccCCch-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc------
Confidence 7755554444444444443322111111000 00011122 24578889999999999999999999999975
Q ss_pred CCChhHHHHHHHHHHHHHHhhhhhhh
Q 013867 310 SHHPKVGVVLTCLALMFRNKAMQEHS 335 (435)
Q Consensus 310 ~~HP~va~~L~nLA~ly~~qG~~e~A 335 (435)
-|.+...+..-|.+|..+|++++|
T Consensus 224 --tPt~~ely~~KarilKh~G~~~~A 247 (517)
T PF12569_consen 224 --TPTLVELYMTKARILKHAGDLKEA 247 (517)
T ss_pred --CCCcHHHHHHHHHHHHHCCCHHHH
Confidence 588899999999999999998777
No 117
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=0.00082 Score=69.70 Aligned_cols=81 Identities=21% Similarity=0.181 Sum_probs=59.0
Q ss_pred hHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhH
Q 013867 236 FLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKV 315 (435)
Q Consensus 236 y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~v 315 (435)
-++|..||+++|.| .- + .+.+.+.+|.|+..-|++.++..|++++|.++- |+
T Consensus 420 rEKAKkf~ek~L~~---~P--------~---------Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~--------D~ 471 (564)
T KOG1174|consen 420 REKAKKFAEKSLKI---NP--------I---------YTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFP--------DV 471 (564)
T ss_pred HHHHHHHHHhhhcc---CC--------c---------cHHHHHHHHHHHHhhCccchHHHHHHHHHhhcc--------cc
Confidence 37888888888877 11 1 345677888888888888888888888888753 22
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHH
Q 013867 316 GVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEF 351 (435)
Q Consensus 316 a~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I 351 (435)
...+.||.++..+..+.+| ...|..||.|
T Consensus 472 -~LH~~Lgd~~~A~Ne~Q~a------m~~y~~ALr~ 500 (564)
T KOG1174|consen 472 -NLHNHLGDIMRAQNEPQKA------MEYYYKALRQ 500 (564)
T ss_pred -HHHHHHHHHHHHhhhHHHH------HHHHHHHHhc
Confidence 3457788888888887666 5667666655
No 118
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.83 E-value=0.001 Score=72.91 Aligned_cols=240 Identities=16% Similarity=0.170 Sum_probs=132.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHH------HHHhhhhhHHHHHHHHHHHHHHHH-hcCCCcchHHHHHHHHHHHHhcCCC
Q 013867 110 SLLAMSTLLYESGNYVEAIEKLQK------VENFKNSILGVRVAAMEALAGLYL-QLGQDDTSSVVADKCLQLCEKHKPE 182 (435)
Q Consensus 110 ~l~nLa~ly~~qGky~eA~~l~~r------al~i~e~~L~i~vaale~L~g~~~-~~g~~~~A~~~~~~~~~l~~~~~~~ 182 (435)
.|..-|.+|.+.-++++|.++|++ +..+..-.+...|..+|.--|.++ ++|+++.|....-....+. +.
T Consensus 663 lydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~~-ka--- 738 (1636)
T KOG3616|consen 663 LYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLI-KA--- 738 (1636)
T ss_pred HHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHH-HH---
Confidence 355667778888888999998875 444443334445666776666654 4567666543322211111 00
Q ss_pred chhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchHHHHHHHHH------HHHHHHHhccc
Q 013867 183 NYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQK------VIEVLAEQKDF 256 (435)
Q Consensus 183 ~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~r------AL~I~~~~~~~ 256 (435)
-+.+--...+.+||.++ .-++.+... ..-++.+ +.-|.+.|+|+.|+.||.+ |+.++-+.-.-
T Consensus 739 -ieaai~akew~kai~il-dniqdqk~~-----s~yy~~i----adhyan~~dfe~ae~lf~e~~~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 -IEAAIGAKEWKKAISIL-DNIQDQKTA-----SGYYGEI----ADHYANKGDFEIAEELFTEADLFKDAIDMYGKAGKW 807 (1636)
T ss_pred -HHHHhhhhhhhhhHhHH-HHhhhhccc-----cccchHH----HHHhccchhHHHHHHHHHhcchhHHHHHHHhccccH
Confidence 00111123455666653 222222100 0112222 2335567777777776654 33332211000
Q ss_pred CCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHH------HHHHHHHHHh---------hCCCChh-HHHHHH
Q 013867 257 SDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEIL------TRTLTKTEEL---------FGSHHPK-VGVVLT 320 (435)
Q Consensus 257 ~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~------~rAL~I~e~~---------lG~~HP~-va~~L~ 320 (435)
.+-..++..-|-|+. +...+..-++=+..+|+|.|||.+| .+|+++|.+. .|..||+ .-.+.-
T Consensus 808 ~da~kla~e~~~~e~-t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~ 886 (1636)
T KOG3616|consen 808 EDAFKLAEECHGPEA-TISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHK 886 (1636)
T ss_pred HHHHHHHHHhcCchh-HHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHH
Confidence 000112211223443 2233445677788999999999999 4788888764 6788888 456788
Q ss_pred HHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHHHhhHh
Q 013867 321 CLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQ 386 (435)
Q Consensus 321 nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~ 386 (435)
.+|.-|...|+...| |..|-.|-+..- .+ .+|.+.+-+++|..+.
T Consensus 887 ~f~~e~e~~g~lkaa------e~~flea~d~ka-----------av----nmyk~s~lw~dayria 931 (1636)
T KOG3616|consen 887 HFAKELEAEGDLKAA------EEHFLEAGDFKA-----------AV----NMYKASELWEDAYRIA 931 (1636)
T ss_pred HHHHHHHhccChhHH------HHHHHhhhhHHH-----------HH----HHhhhhhhHHHHHHHH
Confidence 899999999996554 777766654431 22 2566667777777665
No 119
>PLN02789 farnesyltranstransferase
Probab=97.79 E-value=0.0034 Score=63.88 Aligned_cols=174 Identities=10% Similarity=0.027 Sum_probs=114.7
Q ss_pred ChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 013867 78 SDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESG-NYVEAIEKLQKVENFKNSILGVRVAAMEALAGLY 156 (435)
Q Consensus 78 s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qG-ky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~ 156 (435)
..+++.+|+.++.+++.+. |.-.++.+..+.++...| ++.+|+..+.+++....+.-.+ +
T Consensus 49 ~~e~serAL~lt~~aI~ln--------P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqa----W------- 109 (320)
T PLN02789 49 SDERSPRALDLTADVIRLN--------PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQI----W------- 109 (320)
T ss_pred cCCCCHHHHHHHHHHHHHC--------chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHH----h-------
Confidence 4678999999999999664 667789999999999999 6899999999986544332111 1
Q ss_pred HhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhch
Q 013867 157 LQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNF 236 (435)
Q Consensus 157 ~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y 236 (435)
..+ ..++.+-+...+. +++....++|.. +|....+-...+.++...|+|
T Consensus 110 ------------~~R-~~~l~~l~~~~~~--~el~~~~kal~~----------------dpkNy~AW~~R~w~l~~l~~~ 158 (320)
T PLN02789 110 ------------HHR-RWLAEKLGPDAAN--KELEFTRKILSL----------------DAKNYHAWSHRQWVLRTLGGW 158 (320)
T ss_pred ------------HHH-HHHHHHcCchhhH--HHHHHHHHHHHh----------------CcccHHHHHHHHHHHHHhhhH
Confidence 111 1111211110011 223333344432 133445666677888899999
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHc---CCHH----HHHHHHHHHHHHHHHhhC
Q 013867 237 LLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHM---GNFG----DAEEILTRTLTKTEELFG 309 (435)
Q Consensus 237 ~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~q---G~y~----eAe~l~~rAL~I~e~~lG 309 (435)
++|..+|.++|++ .- . . -.+.+..+.++.+. |+++ ++..+..+++.+
T Consensus 159 ~eeL~~~~~~I~~---d~----~-N------------~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~------ 212 (320)
T PLN02789 159 EDELEYCHQLLEE---DV----R-N------------NSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILA------ 212 (320)
T ss_pred HHHHHHHHHHHHH---CC----C-c------------hhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHh------
Confidence 9999999999998 11 1 1 13567788877776 4443 566666677766
Q ss_pred CCChhHHHHHHHHHHHHHHh
Q 013867 310 SHHPKVGVVLTCLALMFRNK 329 (435)
Q Consensus 310 ~~HP~va~~L~nLA~ly~~q 329 (435)
.|+-..+.++++.+|...
T Consensus 213 --~P~N~SaW~Yl~~ll~~~ 230 (320)
T PLN02789 213 --NPRNESPWRYLRGLFKDD 230 (320)
T ss_pred --CCCCcCHHHHHHHHHhcC
Confidence 577788899999999884
No 120
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.79 E-value=4e-05 Score=52.56 Aligned_cols=33 Identities=21% Similarity=0.281 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhh
Q 013867 276 ATFALGQLEAHMGNFGDAEEILTRTLTKTEELF 308 (435)
Q Consensus 276 ~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~l 308 (435)
++++||.+|..+|+|++|+++|+++|.+.+...
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~~~ 33 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARDPE 33 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc
Confidence 478999999999999999999999999887543
No 121
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=0.0085 Score=63.86 Aligned_cols=220 Identities=13% Similarity=0.109 Sum_probs=135.2
Q ss_pred HHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhh
Q 013867 61 VVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNS 140 (435)
Q Consensus 61 vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~ 140 (435)
-|....++|-..-. .-.+..|++.|.+++.+. ...+-++|.+.+|...|+|++.+.....+.+-...
T Consensus 223 ~a~~ek~lgnaayk----kk~f~~a~q~y~~a~el~---------~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre 289 (539)
T KOG0548|consen 223 KAHKEKELGNAAYK----KKDFETAIQHYAKALELA---------TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE 289 (539)
T ss_pred hhhHHHHHHHHHHH----hhhHHHHHHHHHHHHhHh---------hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH
Confidence 35555666666532 337899999999999665 24556889999999999999999888876543211
Q ss_pred h-HHHH-HH-HHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCccccccccc
Q 013867 141 I-LGVR-VA-AMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEG 217 (435)
Q Consensus 141 ~-L~i~-va-ale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~ 217 (435)
. .... ++ ++-.++..|..++.++.+..++++.+.-... .+.-.-+....++++...... ...|
T Consensus 290 ~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a---------~~~p 355 (539)
T KOG0548|consen 290 LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKA---------YINP 355 (539)
T ss_pred HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHH---------hhCh
Confidence 1 0111 11 1112233344444445444444443322221 001111112222222211000 1112
Q ss_pred chhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 013867 218 CTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEIL 297 (435)
Q Consensus 218 ~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~ 297 (435)
....-.-.-|.-+.+.|+|.+|...|-+|+.- . |+ ....++|.|-.|.+.|.|.+|..-.
T Consensus 356 e~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr-----~-------------P~--Da~lYsNRAac~~kL~~~~~aL~Da 415 (539)
T KOG0548|consen 356 EKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR-----D-------------PE--DARLYSNRAACYLKLGEYPEALKDA 415 (539)
T ss_pred hHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc-----C-------------Cc--hhHHHHHHHHHHHHHhhHHHHHHHH
Confidence 22222222356678899999999999996644 1 11 1245789999999999999999998
Q ss_pred HHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhh
Q 013867 298 TRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHS 335 (435)
Q Consensus 298 ~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A 335 (435)
+.+++. ||.....+.-=|.++..+-+|++|
T Consensus 416 ~~~ieL--------~p~~~kgy~RKg~al~~mk~ydkA 445 (539)
T KOG0548|consen 416 KKCIEL--------DPNFIKAYLRKGAALRAMKEYDKA 445 (539)
T ss_pred HHHHhc--------CchHHHHHHHHHHHHHHHHHHHHH
Confidence 888877 999999999889999999998876
No 122
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.76 E-value=0.0017 Score=65.61 Aligned_cols=192 Identities=17% Similarity=0.183 Sum_probs=116.0
Q ss_pred ChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 013867 78 SDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYL 157 (435)
Q Consensus 78 s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~ 157 (435)
+.|.-|+|+.+.+--+.-- . +. -.-....+..||.-|...|=||.||.+|.+-.+.-+-. ..++..|..+|-
T Consensus 81 sRGEvDRAIRiHQ~L~~sp-d-lT--~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa----~~AlqqLl~IYQ 152 (389)
T COG2956 81 SRGEVDRAIRIHQTLLESP-D-LT--FEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFA----EGALQQLLNIYQ 152 (389)
T ss_pred hcchHHHHHHHHHHHhcCC-C-Cc--hHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhh----HHHHHHHHHHHH
Confidence 6899999999987655321 1 11 12356778899999999999999999998875532211 224445556664
Q ss_pred hcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcc-------cccccccchhHHHHHHHHHH
Q 013867 158 QLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLES-------GLQEEEGCTGSAALSYGEYL 230 (435)
Q Consensus 158 ~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~-------a~~~~~~~~~~~a~~la~~~ 230 (435)
.......|...+.++..+ ++.+|.---+.+....|...+ ...+++. |.+.+..| ..+...+|.++
T Consensus 153 ~treW~KAId~A~~L~k~----~~q~~~~eIAqfyCELAq~~~---~~~~~d~A~~~l~kAlqa~~~c-vRAsi~lG~v~ 224 (389)
T COG2956 153 ATREWEKAIDVAERLVKL----GGQTYRVEIAQFYCELAQQAL---ASSDVDRARELLKKALQADKKC-VRASIILGRVE 224 (389)
T ss_pred HhhHHHHHHHHHHHHHHc----CCccchhHHHHHHHHHHHHHh---hhhhHHHHHHHHHHHHhhCccc-eehhhhhhHHH
Confidence 444444444333322222 211121112222333222210 0111111 11112233 34555688999
Q ss_pred HHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 013867 231 HATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKT 304 (435)
Q Consensus 231 ~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~ 304 (435)
..+|+|++|..-++++++- ++..++ -.+.-|-..|..+|+-++.+.++.++.+.+
T Consensus 225 ~~~g~y~~AV~~~e~v~eQ--------n~~yl~-----------evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~ 279 (389)
T COG2956 225 LAKGDYQKAVEALERVLEQ--------NPEYLS-----------EVLEMLYECYAQLGKPAEGLNFLRRAMETN 279 (389)
T ss_pred HhccchHHHHHHHHHHHHh--------ChHHHH-----------HHHHHHHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 9999999999999998876 121222 245678999999999999999999998764
No 123
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.75 E-value=0.014 Score=60.22 Aligned_cols=243 Identities=17% Similarity=0.091 Sum_probs=151.3
Q ss_pred ChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 013867 78 SDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYL 157 (435)
Q Consensus 78 s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~ 157 (435)
-+|++++|-.++.++-+.- + .++......++.++..+|+|..|..-..+.+.+..+.-.+ +.=..-.|.
T Consensus 130 qrgd~~~an~yL~eaae~~-----~--~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~v----lrLa~r~y~ 198 (400)
T COG3071 130 QRGDEDRANRYLAEAAELA-----G--DDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEV----LRLALRAYI 198 (400)
T ss_pred hcccHHHHHHHHHHHhccC-----C--CchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHH----HHHHHHHHH
Confidence 3577777777777665322 1 2466777788999999999999999998888776654321 111123466
Q ss_pred hcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccc--------cccccchhHHHHHHHHH
Q 013867 158 QLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGL--------QEEEGCTGSAALSYGEY 229 (435)
Q Consensus 158 ~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~--------~~~~~~~~~~a~~la~~ 229 (435)
..|.+... ...+.-+.+.+- +++.+.......|..++......+-.+.. +..--..+.+..+++.-
T Consensus 199 ~~g~~~~l----l~~l~~L~ka~~--l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~ 272 (400)
T COG3071 199 RLGAWQAL----LAILPKLRKAGL--LSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAER 272 (400)
T ss_pred HhccHHHH----HHHHHHHHHccC--CChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHH
Confidence 66755332 233444455553 22334444556666665544433222211 00012235677788888
Q ss_pred HHHhhchHHHHHHHHHHHHHHHH--------hcccCCCCCcc-----cccccchHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 013867 230 LHATRNFLLAKKFYQKVIEVLAE--------QKDFSDMNTLG-----SCNMALEEVALAATFALGQLEAHMGNFGDAEEI 296 (435)
Q Consensus 230 ~~~~G~y~eAe~ly~rAL~I~~~--------~~~~~~~~~l~-----~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l 296 (435)
+-..|++++|..+-+.+|.-... ....+++..+= ....+|+.+ .-+.-||.+|.+.+.|.+|...
T Consensus 273 li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~ 350 (400)
T COG3071 273 LIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEA 350 (400)
T ss_pred HHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHH
Confidence 89999999999999988853100 00000110000 001123333 2345799999999999999999
Q ss_pred HHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcC
Q 013867 297 LTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKA 354 (435)
Q Consensus 297 ~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~ 354 (435)
|+.|+... .-+..++-+|.+|.++|+-++| +..++.+|-....
T Consensus 351 leaAl~~~---------~s~~~~~~la~~~~~~g~~~~A------~~~r~e~L~~~~~ 393 (400)
T COG3071 351 LEAALKLR---------PSASDYAELADALDQLGEPEEA------EQVRREALLLTRQ 393 (400)
T ss_pred HHHHHhcC---------CChhhHHHHHHHHHHcCChHHH------HHHHHHHHHHhcC
Confidence 99988753 2467899999999999997766 8999999966554
No 124
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=0.0071 Score=62.98 Aligned_cols=74 Identities=12% Similarity=0.117 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHH
Q 013867 291 GDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTD 370 (435)
Q Consensus 291 ~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla 370 (435)
++|..+|+++|.| .|.....-+-+|.+...-|+++++ ..|.+++|.++ ||+. -=+-++
T Consensus 421 EKAKkf~ek~L~~--------~P~Y~~AV~~~AEL~~~Eg~~~D~------i~LLe~~L~~~-------~D~~-LH~~Lg 478 (564)
T KOG1174|consen 421 EKAKKFAEKSLKI--------NPIYTPAVNLIAELCQVEGPTKDI------IKLLEKHLIIF-------PDVN-LHNHLG 478 (564)
T ss_pred HHHHHHHHhhhcc--------CCccHHHHHHHHHHHHhhCccchH------HHHHHHHHhhc-------cccH-HHHHHH
Confidence 3455555555543 588888899999999999998877 89999999998 3321 112366
Q ss_pred HHHHHhcCHHHHhhHh
Q 013867 371 IVALARGGYAEALSVQ 386 (435)
Q Consensus 371 ~~~~a~G~yaeal~~~ 386 (435)
.+..++..|.+++..+
T Consensus 479 d~~~A~Ne~Q~am~~y 494 (564)
T KOG1174|consen 479 DIMRAQNEPQKAMEYY 494 (564)
T ss_pred HHHHHhhhHHHHHHHH
Confidence 6777777787777655
No 125
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.70 E-value=0.00014 Score=74.91 Aligned_cols=108 Identities=19% Similarity=0.255 Sum_probs=85.2
Q ss_pred HHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 013867 226 YGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTE 305 (435)
Q Consensus 226 la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e 305 (435)
-|.+|...|+|..|...|+||+..++....+..+. . .....+.+.+.+||+..|.++.+|.+|...-.++|.+
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee--~---~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~-- 286 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEE--Q---KKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL-- 286 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHH--H---HHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc--
Confidence 36688999999999999999999986443321110 0 0122345667789999999999999999999999975
Q ss_pred HhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 306 ELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 306 ~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
+ |.-.-.|.--|.+|..+|+|+.| ...|++|+++.
T Consensus 287 ---~---~~N~KALyRrG~A~l~~~e~~~A------~~df~ka~k~~ 321 (397)
T KOG0543|consen 287 ---D---PNNVKALYRRGQALLALGEYDLA------RDDFQKALKLE 321 (397)
T ss_pred ---C---CCchhHHHHHHHHHHhhccHHHH------HHHHHHHHHhC
Confidence 3 34456899999999999998877 89999999987
No 126
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.69 E-value=0.00031 Score=66.13 Aligned_cols=118 Identities=15% Similarity=0.151 Sum_probs=85.3
Q ss_pred HHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 013867 226 YGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTE 305 (435)
Q Consensus 226 la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e 305 (435)
+|+.+-..|+|.||+++|++++... ++. ..+.|.+|++.....+++.+|.+.++..
T Consensus 95 La~al~elGr~~EA~~hy~qalsG~-----------fA~--------d~a~lLglA~Aqfa~~~~A~a~~tLe~l----- 150 (251)
T COG4700 95 LANALAELGRYHEAVPHYQQALSGI-----------FAH--------DAAMLLGLAQAQFAIQEFAAAQQTLEDL----- 150 (251)
T ss_pred HHHHHHHhhhhhhhHHHHHHHhccc-----------cCC--------CHHHHHHHHHHHHhhccHHHHHHHHHHH-----
Confidence 5677788999999999999999872 221 1246789999999999999999988754
Q ss_pred HhhCCCChh--HHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHHHh
Q 013867 306 ELFGSHHPK--VGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEAL 383 (435)
Q Consensus 306 ~~lG~~HP~--va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yaeal 383 (435)
|+-||. +....--+|.+|..+|++++| |.-|+.++.-+ |+.. ..-.-+..+.+|||.+|+-
T Consensus 151 ---~e~~pa~r~pd~~Ll~aR~laa~g~~a~A------esafe~a~~~y-------pg~~-ar~~Y~e~La~qgr~~ea~ 213 (251)
T COG4700 151 ---MEYNPAFRSPDGHLLFARTLAAQGKYADA------ESAFEVAISYY-------PGPQ-ARIYYAEMLAKQGRLREAN 213 (251)
T ss_pred ---hhcCCccCCCCchHHHHHHHHhcCCchhH------HHHHHHHHHhC-------CCHH-HHHHHHHHHHHhcchhHHH
Confidence 455565 344556689999999998776 88999998877 2311 1112344456777666653
Q ss_pred h
Q 013867 384 S 384 (435)
Q Consensus 384 ~ 384 (435)
.
T Consensus 214 a 214 (251)
T COG4700 214 A 214 (251)
T ss_pred H
Confidence 3
No 127
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.67 E-value=0.014 Score=64.93 Aligned_cols=264 Identities=15% Similarity=0.139 Sum_probs=139.0
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhh---HHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCC
Q 013867 105 SWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSI---LGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKP 181 (435)
Q Consensus 105 p~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~---L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~ 181 (435)
-..-.+|++-|.-+...|+...|++.|+++..-+-.. |.....++ ..|.+.-.+. .++.-....++..+.
T Consensus 855 iHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~----e~Yv~~~~d~---~L~~WWgqYlES~Ge 927 (1416)
T KOG3617|consen 855 IHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQI----EQYVRRKRDE---SLYSWWGQYLESVGE 927 (1416)
T ss_pred eehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHH----HHHHHhccch---HHHHHHHHHHhcccc
Confidence 3466788889998999999999999998864321111 11111111 1222222221 223333444554442
Q ss_pred CchhchhhHHHHHHHHH--HHHHH--hcCCCcccccccccchhHHH--HHHHHHHHHhhchHHHHHHHHHHHHHHHHhcc
Q 013867 182 ENYKTYGAVNSRANAVK--GLVEL--AHGNLESGLQEEEGCTGSAA--LSYGEYLHATRNFLLAKKFYQKVIEVLAEQKD 255 (435)
Q Consensus 182 ~~~~eaeal~~~a~Ai~--~~~~~--lgg~h~~a~~~~~~~~~~~a--~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~ 255 (435)
. + -++..+.+|-. -++.+ .+|+..+|....+ ..++.+ .-+|.-|.++|++.+|..+|-||-+.--...-
T Consensus 928 m--d--aAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~-esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRl 1002 (1416)
T KOG3617|consen 928 M--D--AALSFYSSAKDYFSMVRIKCIQGKTDKAARIAE-ESGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRL 1002 (1416)
T ss_pred h--H--HHHHHHHHhhhhhhheeeEeeccCchHHHHHHH-hcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1 12222222221 11111 2344444332221 112222 33577889999999999999998654211000
Q ss_pred cCCCCCcccccccchHHHHHHH------HHHHHHHHHcC-CHHHHHHHHHHH------------------HHHHHHhhCC
Q 013867 256 FSDMNTLGSCNMALEEVALAAT------FALGQLEAHMG-NFGDAEEILTRT------------------LTKTEELFGS 310 (435)
Q Consensus 256 ~~~~~~l~~~~~~~~~~~l~~l------~nLa~ly~~qG-~y~eAe~l~~rA------------------L~I~e~~lG~ 310 (435)
-..+.+- ..-.+++.+ ..-|.-|...| .++.|-.||.+| |+|--+-|.+
T Consensus 1003 -cKEnd~~-----d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~ 1076 (1416)
T KOG3617|consen 1003 -CKENDMK-----DRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDA 1076 (1416)
T ss_pred -HHhcCHH-----HHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCC
Confidence 0000110 000011111 11133344444 555666666544 3333333332
Q ss_pred CChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCC---------------CCCc---hhhhhccHHHH
Q 013867 311 HHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPL---------------ESEG---VETKVDRTDIV 372 (435)
Q Consensus 311 ~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~---------------~hp~---~a~~l~nla~~ 372 (435)
.. =...|+.-|..+...-+|++|..+.-+-.-|++||.|.+--+. +.|. -...|-.++.+
T Consensus 1077 ~s--Dp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~ 1154 (1416)
T KOG3617|consen 1077 GS--DPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAEL 1154 (1416)
T ss_pred CC--CHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHH
Confidence 21 2345778899999999999998888888889999999842111 1111 12345577889
Q ss_pred HHHhcCHHHHhhHhhh
Q 013867 373 ALARGGYAEALSVQQN 388 (435)
Q Consensus 373 ~~a~G~yaeal~~~~~ 388 (435)
++.||.|.-|...+-+
T Consensus 1155 c~qQG~Yh~AtKKfTQ 1170 (1416)
T KOG3617|consen 1155 CLQQGAYHAATKKFTQ 1170 (1416)
T ss_pred HHhccchHHHHHHHhh
Confidence 9999999999888755
No 128
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.64 E-value=0.00027 Score=70.85 Aligned_cols=94 Identities=20% Similarity=0.245 Sum_probs=64.2
Q ss_pred hhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCC
Q 013867 233 TRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHH 312 (435)
Q Consensus 233 ~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~H 312 (435)
..+|.+|.-+|+..- . ..+. +...++.+|.++..+|+|+||+.++++||+. .+++
T Consensus 180 ~e~~~~A~y~f~El~------~------~~~~--------t~~~lng~A~~~l~~~~~~eAe~~L~~al~~-----~~~~ 234 (290)
T PF04733_consen 180 GEKYQDAFYIFEELS------D------KFGS--------TPKLLNGLAVCHLQLGHYEEAEELLEEALEK-----DPND 234 (290)
T ss_dssp TTCCCHHHHHHHHHH------C------CS----------SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC------CCH
T ss_pred chhHHHHHHHHHHHH------h------ccCC--------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-----ccCC
Confidence 347888888888731 1 1121 2245789999999999999999999999852 3455
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchh
Q 013867 313 PKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVE 363 (435)
Q Consensus 313 P~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a 363 (435)
| .++.|++.+...+|+..++ -+|-+.-++...|+||-+.
T Consensus 235 ~---d~LaNliv~~~~~gk~~~~---------~~~~l~qL~~~~p~h~~~~ 273 (290)
T PF04733_consen 235 P---DTLANLIVCSLHLGKPTEA---------AERYLSQLKQSNPNHPLVK 273 (290)
T ss_dssp H---HHHHHHHHHHHHTT-TCHH---------HHHHHHHCHHHTTTSHHHH
T ss_pred H---HHHHHHHHHHHHhCCChhH---------HHHHHHHHHHhCCCChHHH
Confidence 5 5788999999999997433 3344555555578888644
No 129
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.63 E-value=0.0043 Score=66.75 Aligned_cols=101 Identities=15% Similarity=0.196 Sum_probs=72.1
Q ss_pred hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHH-HHHHHHHHHcCCHHHHHHHH
Q 013867 219 TGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAAT-FALGQLEAHMGNFGDAEEIL 297 (435)
Q Consensus 219 ~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l-~nLa~ly~~qG~y~eAe~l~ 297 (435)
....+.|.|..+-..|+|.+|+++.++|+.|..+.+..++...-+ ++ -.++.. .-|+-+|..||+-.||..+|
T Consensus 174 syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEe-----ie-~el~~IrvQlayVlQ~~Gqt~ea~~iy 247 (652)
T KOG2376|consen 174 SYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEE-----IE-EELNPIRVQLAYVLQLQGQTAEASSIY 247 (652)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhh-----HH-HHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 456778888889999999999999999999987766532222101 11 123332 36899999999999988888
Q ss_pred HHHHHHHHHhhCCCChhHHHHHHHHHHHHHHh
Q 013867 298 TRTLTKTEELFGSHHPKVGVVLTCLALMFRNK 329 (435)
Q Consensus 298 ~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~q 329 (435)
...+.- .-+|-|..|+.-|||=.+-..+
T Consensus 248 ~~~i~~----~~~D~~~~Av~~NNLva~~~d~ 275 (652)
T KOG2376|consen 248 VDIIKR----NPADEPSLAVAVNNLVALSKDQ 275 (652)
T ss_pred HHHHHh----cCCCchHHHHHhcchhhhcccc
Confidence 776643 4456667899999987664444
No 130
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.62 E-value=0.00024 Score=57.18 Aligned_cols=82 Identities=20% Similarity=0.233 Sum_probs=57.8
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhh
Q 013867 286 HMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETK 365 (435)
Q Consensus 286 ~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~ 365 (435)
.||+|++|+.+|+++++.... .| -...+.+||.+|..+|+|++| ..++++ +.+. +.+++.
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~-----~~-~~~~~~~la~~~~~~~~y~~A------~~~~~~-~~~~----~~~~~~--- 60 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPT-----NP-NSAYLYNLAQCYFQQGKYEEA------IELLQK-LKLD----PSNPDI--- 60 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCG-----TH-HHHHHHHHHHHHHHTTHHHHH------HHHHHC-HTHH----HCHHHH---
T ss_pred CCccHHHHHHHHHHHHHHCCC-----Ch-hHHHHHHHHHHHHHCCCHHHH------HHHHHH-hCCC----CCCHHH---
Confidence 479999999999999998654 23 455677799999999997665 666666 3222 222332
Q ss_pred hccHHHHHHHhcCHHHHhhHhh
Q 013867 366 VDRTDIVALARGGYAEALSVQQ 387 (435)
Q Consensus 366 l~nla~~~~a~G~yaeal~~~~ 387 (435)
.--+|.++...|+|+||+...+
T Consensus 61 ~~l~a~~~~~l~~y~eAi~~l~ 82 (84)
T PF12895_consen 61 HYLLARCLLKLGKYEEAIKALE 82 (84)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHh
Confidence 2245888999999999988764
No 131
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.62 E-value=0.00014 Score=55.56 Aligned_cols=53 Identities=23% Similarity=0.303 Sum_probs=43.0
Q ss_pred HHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 013867 231 HATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTK 303 (435)
Q Consensus 231 ~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I 303 (435)
..+|+|++|+.+|++++... |+ .......||.+|..+|+|++|+.++++++..
T Consensus 2 l~~~~~~~A~~~~~~~l~~~------------------p~--~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN------------------PD--NPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT------------------TT--SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHC------------------CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 46899999999999999881 11 1245678999999999999999999998864
No 132
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.61 E-value=0.0093 Score=56.29 Aligned_cols=162 Identities=17% Similarity=0.141 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013867 221 SAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRT 300 (435)
Q Consensus 221 ~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rA 300 (435)
......|..+..+|+|++|+..|++.+..+ +.+ ..+ -.+...+|..|..+|+|++|...|++-
T Consensus 6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~------P~s-~~a----------~~A~l~la~a~y~~~~y~~A~~~~~~f 68 (203)
T PF13525_consen 6 EALYQKALEALQQGDYEEAIKLFEKLIDRY------PNS-PYA----------PQAQLMLAYAYYKQGDYEEAIAAYERF 68 (203)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-------TTS-TTH----------HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHC------CCC-hHH----------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 345556777789999999999999998773 112 122 246789999999999999999999999
Q ss_pred HHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhh-----hhhhhHHHHHHHHHHHHHhcCCCCCCCchh------------
Q 013867 301 LTKTEELFGSHHPKVGVVLTCLALMFRNKAMQE-----HSSALLIQEGLYRRALEFLKAPPLESEGVE------------ 363 (435)
Q Consensus 301 L~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e-----~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a------------ 363 (435)
+.-+ |+||.+..++..+|..+..+.+-. +.....+|...|++-+.-+ |+++-+.
T Consensus 69 i~~y-----P~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~y----P~S~y~~~A~~~l~~l~~~ 139 (203)
T PF13525_consen 69 IKLY-----PNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRY----PNSEYAEEAKKRLAELRNR 139 (203)
T ss_dssp HHH------TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-----TTSTTHHHHHHHHHHHHHH
T ss_pred HHHC-----CCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHC----cCchHHHHHHHHHHHHHHH
Confidence 8654 899999999999999987765321 1112334455555555443 5555322
Q ss_pred --hhhccHHHHHHHhcCHHHHhhHhhh-------hhhHHHHHHHHHHHHhcccc
Q 013867 364 --TKVDRTDIVALARGGYAEALSVQQN-------RKDEGERMKRWAEAAWRNRR 408 (435)
Q Consensus 364 --~~l~nla~~~~a~G~yaeal~~~~~-------r~~eae~~~~~a~~~~~~~r 408 (435)
.---.++-.|..+|.|..|...... -...-+.|....+++.+-+-
T Consensus 140 la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~ 193 (203)
T PF13525_consen 140 LAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGL 193 (203)
T ss_dssp HHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCC
Confidence 1111345567777877777654422 22223566666666665444
No 133
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=0.0042 Score=66.10 Aligned_cols=214 Identities=17% Similarity=0.220 Sum_probs=135.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhc
Q 013867 107 RGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKT 186 (435)
Q Consensus 107 ~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~e 186 (435)
.|.-.-+||+..+++-+++.|++.|.+++.+. +..+- ..+.+-.|.++|.+.. |.....+......
T Consensus 223 ~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~----~~n~aA~~~e~~~~~~-------c~~~c~~a~E~gr-- 288 (539)
T KOG0548|consen 223 KAHKEKELGNAAYKKKDFETAIQHYAKALELA-TDITY----LNNIAAVYLERGKYAE-------CIELCEKAVEVGR-- 288 (539)
T ss_pred hhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHH----HHHHHHHHHhccHHHH-------hhcchHHHHHHhH--
Confidence 45667889999999999999999999998876 33322 3344455666664422 2222211000000
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH------------hc
Q 013867 187 YGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAE------------QK 254 (435)
Q Consensus 187 aeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~------------~~ 254 (435)
+ .|+. ..+ +......+|..|..+|+|+.|+.+|+|+|.-... .+
T Consensus 289 -e---~rad--~kl------------------Iak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~ 344 (539)
T KOG0548|consen 289 -E---LRAD--YKL------------------IAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKAL 344 (539)
T ss_pred -H---HHHH--HHH------------------HHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHH
Confidence 0 0000 000 0111112455778889999999999998876321 11
Q ss_pred ccC-CCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhh
Q 013867 255 DFS-DMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQE 333 (435)
Q Consensus 255 ~~~-~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e 333 (435)
+.. ..... .|+- ....-+=|+-+.+.|+|.+|...|++|+..- |+-+..+.|.|..|-.-|.+.
T Consensus 345 k~~e~~a~~-----~pe~--A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~--------P~Da~lYsNRAac~~kL~~~~ 409 (539)
T KOG0548|consen 345 KEAERKAYI-----NPEK--AEEEREKGNEAFKKGDYPEAVKHYTEAIKRD--------PEDARLYSNRAACYLKLGEYP 409 (539)
T ss_pred HHHHHHHhh-----ChhH--HHHHHHHHHHHHhccCHHHHHHHHHHHHhcC--------CchhHHHHHHHHHHHHHhhHH
Confidence 100 01111 1221 1222345889999999999999999977643 999999999999999999876
Q ss_pred hhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHHHhhHh
Q 013867 334 HSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQ 386 (435)
Q Consensus 334 ~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~ 386 (435)
.| ..=.+.+++. +|...+....-+.++...-+|+.|+..+
T Consensus 410 ~a------L~Da~~~ieL-------~p~~~kgy~RKg~al~~mk~ydkAleay 449 (539)
T KOG0548|consen 410 EA------LKDAKKCIEL-------DPNFIKAYLRKGAALRAMKEYDKALEAY 449 (539)
T ss_pred HH------HHHHHHHHhc-------CchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65 4445555555 6776656666677777888899988865
No 134
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.60 E-value=0.00049 Score=68.64 Aligned_cols=80 Identities=16% Similarity=0.105 Sum_probs=66.1
Q ss_pred hhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccc
Q 013867 188 GAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNM 267 (435)
Q Consensus 188 eal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~ 267 (435)
+++..|..||.. .|..+....+-|.+|.+.|.|+.|+.=.+.||.| ++ +
T Consensus 99 eAv~kY~~AI~l----------------~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--------Dp-~------ 147 (304)
T KOG0553|consen 99 EAVDKYTEAIEL----------------DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--------DP-H------ 147 (304)
T ss_pred HHHHHHHHHHhc----------------CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--------Ch-H------
Confidence 667778888863 1444456677899999999999999999999999 11 1
Q ss_pred cchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 013867 268 ALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTK 303 (435)
Q Consensus 268 ~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I 303 (435)
+..++..||.+|..+|+|.+|++.|++||+|
T Consensus 148 -----yskay~RLG~A~~~~gk~~~A~~aykKaLel 178 (304)
T KOG0553|consen 148 -----YSKAYGRLGLAYLALGKYEEAIEAYKKALEL 178 (304)
T ss_pred -----HHHHHHHHHHHHHccCcHHHHHHHHHhhhcc
Confidence 3468899999999999999999999999986
No 135
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.60 E-value=0.00061 Score=67.43 Aligned_cols=97 Identities=12% Similarity=0.077 Sum_probs=81.3
Q ss_pred HHHHHHHH-HHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcC
Q 013867 276 ATFALGQL-EAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKA 354 (435)
Q Consensus 276 ~l~nLa~l-y~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~ 354 (435)
...+.|.- +..+|+|++|...|++.+..+ |+++.+..++..||.+|..+|+|++| ...|++++.-+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y-----P~s~~a~~A~y~LG~~y~~~g~~~~A------~~~f~~vv~~y-- 210 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKY-----PDSTYQPNANYWLGQLNYNKGKKDDA------AYYFASVVKNY-- 210 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-----cCCcchHHHHHHHHHHHHHcCCHHHH------HHHHHHHHHHC--
Confidence 44555554 467899999999999999876 77888899999999999999998876 77788887766
Q ss_pred CCCCCCchhhhhccHHHHHHHhcCHHHHhhHhh
Q 013867 355 PPLESEGVETKVDRTDIVALARGGYAEALSVQQ 387 (435)
Q Consensus 355 ~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~~ 387 (435)
|+||.....+..++.++..+|++++|...++
T Consensus 211 --P~s~~~~dAl~klg~~~~~~g~~~~A~~~~~ 241 (263)
T PRK10803 211 --PKSPKAADAMFKVGVIMQDKGDTAKAKAVYQ 241 (263)
T ss_pred --CCCcchhHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 6777777788889999999999999988774
No 136
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.58 E-value=0.0083 Score=58.58 Aligned_cols=188 Identities=12% Similarity=0.110 Sum_probs=109.0
Q ss_pred HHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHH
Q 013867 64 QMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILG 143 (435)
Q Consensus 64 ~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~ 143 (435)
..-.-|.... ..|+|++|+..|++.+... |..|........||.+|+.+|+|++|+..|++.+...+.+-.
T Consensus 34 ~~Y~~A~~~~----~~g~y~~Ai~~f~~l~~~y-----P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~ 104 (243)
T PRK10866 34 EIYATAQQKL----QDGNWKQAITQLEALDNRY-----PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN 104 (243)
T ss_pred HHHHHHHHHH----HCCCHHHHHHHHHHHHHhC-----CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCc
Confidence 3334455542 3589999999999999765 445778888999999999999999999999999877665533
Q ss_pred HHHHHHHHHHHHHHhcC-----------CCcchHHHHH---HHHHHHHhcCCCc-hhchhhHHHHHHHHHHHHHHhcCCC
Q 013867 144 VRVAAMEALAGLYLQLG-----------QDDTSSVVAD---KCLQLCEKHKPEN-YKTYGAVNSRANAVKGLVELAHGNL 208 (435)
Q Consensus 144 i~vaale~L~g~~~~~g-----------~~~~A~~~~~---~~~~l~~~~~~~~-~~eaeal~~~a~Ai~~~~~~lgg~h 208 (435)
+.-+ +-.++-.+..++ +...-..... ..+..+....|.. | +.....+-..++.
T Consensus 105 ~~~a-~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~y--a~~A~~rl~~l~~--------- 172 (243)
T PRK10866 105 IDYV-LYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQY--TTDATKRLVFLKD--------- 172 (243)
T ss_pred hHHH-HHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChh--HHHHHHHHHHHHH---------
Confidence 2211 100111111111 1000000111 1111122222111 1 0111111111111
Q ss_pred cccccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcC
Q 013867 209 ESGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMG 288 (435)
Q Consensus 209 ~~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG 288 (435)
.+..--...|.+|...|+|.-|..=++.+++=+ ++.+. .-.++.-|...|...|
T Consensus 173 ---------~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Y------p~t~~-----------~~eal~~l~~ay~~lg 226 (243)
T PRK10866 173 ---------RLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDY------PDTQA-----------TRDALPLMENAYRQLQ 226 (243)
T ss_pred ---------HHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHC------CCCch-----------HHHHHHHHHHHHHHcC
Confidence 111223456889999999999999888888652 11111 2247889999999999
Q ss_pred CHHHHHHHHH
Q 013867 289 NFGDAEEILT 298 (435)
Q Consensus 289 ~y~eAe~l~~ 298 (435)
.-++|.....
T Consensus 227 ~~~~a~~~~~ 236 (243)
T PRK10866 227 LNAQADKVAK 236 (243)
T ss_pred ChHHHHHHHH
Confidence 9999987553
No 137
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.55 E-value=0.0022 Score=72.94 Aligned_cols=158 Identities=10% Similarity=0.045 Sum_probs=105.1
Q ss_pred CCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHh
Q 013867 99 DGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEK 178 (435)
Q Consensus 99 ~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~ 178 (435)
.++.=.|+-...+..|..+|..+|++++|+.+++.+++. .|.....-+.... ++..
T Consensus 22 ~~~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~----------------------~P~~i~~yy~~G~--l~~q 77 (906)
T PRK14720 22 DANNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKE----------------------HKKSISALYISGI--LSLS 77 (906)
T ss_pred ccccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh----------------------CCcceehHHHHHH--HHHh
Confidence 355557888999999999999999999999998876443 2332221111111 2211
Q ss_pred cCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCC
Q 013867 179 HKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSD 258 (435)
Q Consensus 179 ~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~ 258 (435)
.++ +.++-.+ .+........++.-.+.+|.+.+++..
T Consensus 78 ~~~--~~~~~lv----------------------------------~~l~~~~~~~~~~~ve~~~~~i~~~~~------- 114 (906)
T PRK14720 78 RRP--LNDSNLL----------------------------------NLIDSFSQNLKWAIVEHICDKILLYGE------- 114 (906)
T ss_pred hcc--hhhhhhh----------------------------------hhhhhcccccchhHHHHHHHHHHhhhh-------
Confidence 111 1111100 111122233456555566666555521
Q ss_pred CCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhh
Q 013867 259 MNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSAL 338 (435)
Q Consensus 259 ~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~ 338 (435)
+ --++..||..|.++|++++|...|+++|.+. |+=+.+|||+|..|..+ +.++|
T Consensus 115 ~--------------k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D--------~~n~~aLNn~AY~~ae~-dL~KA--- 168 (906)
T PRK14720 115 N--------------KLALRTLAEAYAKLNENKKLKGVWERLVKAD--------RDNPEIVKKLATSYEEE-DKEKA--- 168 (906)
T ss_pred h--------------hHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--------cccHHHHHHHHHHHHHh-hHHHH---
Confidence 1 1257899999999999999999999999986 77788999999999999 87766
Q ss_pred HHHHHHHHHHHHHh
Q 013867 339 LIQEGLYRRALEFL 352 (435)
Q Consensus 339 ~~Ae~Ly~rAL~I~ 352 (435)
+.+|.+|++.+
T Consensus 169 ---~~m~~KAV~~~ 179 (906)
T PRK14720 169 ---ITYLKKAIYRF 179 (906)
T ss_pred ---HHHHHHHHHHH
Confidence 88888888775
No 138
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.55 E-value=0.0095 Score=58.17 Aligned_cols=86 Identities=12% Similarity=-0.001 Sum_probs=68.7
Q ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013867 223 ALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLT 302 (435)
Q Consensus 223 a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~ 302 (435)
...-|.-+...|+|++|+..|++.+... . +. . ....+..+||.+|..+|+|++|...|++.+.
T Consensus 35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y---P---~s-~----------~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~ 97 (243)
T PRK10866 35 IYATAQQKLQDGNWKQAITQLEALDNRY---P---FG-P----------YSQQVQLDLIYAYYKNADLPLAQAAIDRFIR 97 (243)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC---C---CC-h----------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3344556677899999999999999872 1 11 1 1234678999999999999999999999998
Q ss_pred HHHHhhCCCChhHHHHHHHHHHHHHHhh
Q 013867 303 KTEELFGSHHPKVGVVLTCLALMFRNKA 330 (435)
Q Consensus 303 I~e~~lG~~HP~va~~L~nLA~ly~~qG 330 (435)
.+ |+||++..++.-+|..+...+
T Consensus 98 ~~-----P~~~~~~~a~Y~~g~~~~~~~ 120 (243)
T PRK10866 98 LN-----PTHPNIDYVLYMRGLTNMALD 120 (243)
T ss_pred hC-----cCCCchHHHHHHHHHhhhhcc
Confidence 75 899999999999998875554
No 139
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.55 E-value=0.00045 Score=53.57 Aligned_cols=67 Identities=13% Similarity=0.188 Sum_probs=53.4
Q ss_pred HHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 013867 227 GEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEE 306 (435)
Q Consensus 227 a~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~ 306 (435)
..+|..+++|++|...+++++.+. |+ ....+..+|.+|..+|+|++|...|++++++
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~------------------p~--~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~--- 58 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELD------------------PD--DPELWLQRARCLFQLGRYEEALEDLERALEL--- 58 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhC------------------cc--cchhhHHHHHHHHHhccHHHHHHHHHHHHHH---
Confidence 456889999999999999999981 11 1134678999999999999999999999954
Q ss_pred hhCCCChhHHHH
Q 013867 307 LFGSHHPKVGVV 318 (435)
Q Consensus 307 ~lG~~HP~va~~ 318 (435)
+|++|+....
T Consensus 59 --~p~~~~~~~~ 68 (73)
T PF13371_consen 59 --SPDDPDARAL 68 (73)
T ss_pred --CCCcHHHHHH
Confidence 5677765443
No 140
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.55 E-value=0.0097 Score=59.82 Aligned_cols=201 Identities=14% Similarity=0.199 Sum_probs=113.7
Q ss_pred CCChHHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013867 56 LNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVE 135 (435)
Q Consensus 56 ~~~~~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral 135 (435)
.+|..|...+|+ +-+|.+|++++.-- ++..|.+-..++-||..|+.--+|.+|-++|+|--
T Consensus 11 Geftaviy~lI~-----------d~ry~DaI~~l~s~--------~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ 71 (459)
T KOG4340|consen 11 GEFTAVVYRLIR-----------DARYADAIQLLGSE--------LERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLG 71 (459)
T ss_pred CchHHHHHHHHH-----------HhhHHHHHHHHHHH--------HhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666665 24799999988753 35567777788899999999999999999999864
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCccccccc
Q 013867 136 NFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEE 215 (435)
Q Consensus 136 ~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~ 215 (435)
....+--.-+.= -.-.+| +.+.+..|.. .+.+ .++ .+.+..++.-+..-+.-..++.+.+..+-
T Consensus 72 ql~P~~~qYrlY---~AQSLY-~A~i~ADALr----V~~~--~~D------~~~L~~~~lqLqaAIkYse~Dl~g~rsLv 135 (459)
T KOG4340|consen 72 QLHPELEQYRLY---QAQSLY-KACIYADALR----VAFL--LLD------NPALHSRVLQLQAAIKYSEGDLPGSRSLV 135 (459)
T ss_pred hhChHHHHHHHH---HHHHHH-HhcccHHHHH----HHHH--hcC------CHHHHHHHHHHHHHHhcccccCcchHHHH
Confidence 433221111000 000001 1111111111 0111 111 01121222111111111122222211100
Q ss_pred ----ccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHH
Q 013867 216 ----EGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFG 291 (435)
Q Consensus 216 ----~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~ 291 (435)
..+...+.++.|.+...-|+|++|.+-|+.|++. -|+ .|-+ -.|+|..+...|+|+
T Consensus 136 eQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqv----sGy--qpll--------------AYniALaHy~~~qya 195 (459)
T KOG4340|consen 136 EQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQV----SGY--QPLL--------------AYNLALAHYSSRQYA 195 (459)
T ss_pred HhccCCCccchhccchheeeccccHHHHHHHHHHHHhh----cCC--Cchh--------------HHHHHHHHHhhhhHH
Confidence 0123456677888889999999999999999988 221 1111 268999999999999
Q ss_pred HHHHHHHHHHHHHHHhhCCCChhH
Q 013867 292 DAEEILTRTLTKTEELFGSHHPKV 315 (435)
Q Consensus 292 eAe~l~~rAL~I~e~~lG~~HP~v 315 (435)
.|..+....++-.- .+||..
T Consensus 196 sALk~iSEIieRG~----r~HPEl 215 (459)
T KOG4340|consen 196 SALKHISEIIERGI----RQHPEL 215 (459)
T ss_pred HHHHHHHHHHHhhh----hcCCcc
Confidence 99999877666544 367764
No 141
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.52 E-value=0.015 Score=54.82 Aligned_cols=187 Identities=18% Similarity=0.201 Sum_probs=102.7
Q ss_pred HHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhh
Q 013867 62 VLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSI 141 (435)
Q Consensus 62 A~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~ 141 (435)
+..+=..|..+- ..|+|++|+..|++..... |.+|....+...+|..|+.+|+|++|+..|++-+...+.+
T Consensus 5 ~~~lY~~a~~~~----~~g~y~~Ai~~f~~l~~~~-----P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~ 75 (203)
T PF13525_consen 5 AEALYQKALEAL----QQGDYEEAIKLFEKLIDRY-----PNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNS 75 (203)
T ss_dssp HHHHHHHHHHHH----HCT-HHHHHHHHHHHHHH------TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-
T ss_pred HHHHHHHHHHHH----HCCCHHHHHHHHHHHHHHC-----CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Confidence 445555666652 3689999999999998665 6788999999999999999999999999999987665544
Q ss_pred HHHHHHHHHHHHHHHHhc-------CCCcchHHHHHHHHHHHHhcCCC-chhchhhHHHHHHHHHHHHHHhcCCCccccc
Q 013867 142 LGVRVAAMEALAGLYLQL-------GQDDTSSVVADKCLQLCEKHKPE-NYKTYGAVNSRANAVKGLVELAHGNLESGLQ 213 (435)
Q Consensus 142 L~i~vaale~L~g~~~~~-------g~~~~A~~~~~~~~~l~~~~~~~-~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~ 213 (435)
--+.-+ +-.++-.+..+ ..+.....-+-.....+....|. .|. .....+...++.
T Consensus 76 ~~~~~A-~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~--~~A~~~l~~l~~-------------- 138 (203)
T PF13525_consen 76 PKADYA-LYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYA--EEAKKRLAELRN-------------- 138 (203)
T ss_dssp TTHHHH-HHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTH--HHHHHHHHHHHH--------------
T ss_pred cchhhH-HHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHH--HHHHHHHHHHHH--------------
Confidence 322111 10011111111 11110000011111111122211 110 111111111111
Q ss_pred ccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHH
Q 013867 214 EEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDA 293 (435)
Q Consensus 214 ~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eA 293 (435)
.+..--...|.+|..+|+|.-|..-|+.+++-+ . +.+. .-.++.-|+..|...|..+.|
T Consensus 139 ----~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~y---p---~t~~-----------~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 139 ----RLAEHELYIARFYYKRGKYKAAIIRFQYVIENY---P---DTPA-----------AEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp ----HHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHS---T---TSHH-----------HHHHHHHHHHHHHHTT-HHHH
T ss_pred ----HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC---C---CCch-----------HHHHHHHHHHHHHHhCChHHH
Confidence 111222346889999999999999999988772 1 1100 123788899999999999866
Q ss_pred HH
Q 013867 294 EE 295 (435)
Q Consensus 294 e~ 295 (435)
..
T Consensus 198 ~~ 199 (203)
T PF13525_consen 198 DT 199 (203)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 142
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.52 E-value=0.0042 Score=58.70 Aligned_cols=129 Identities=19% Similarity=0.182 Sum_probs=84.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCC--cchHHHHHHHHHHHHhcCCCchhchh
Q 013867 111 LLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQD--DTSSVVADKCLQLCEKHKPENYKTYG 188 (435)
Q Consensus 111 l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~g~~--~~A~~~~~~~~~l~~~~~~~~~~eae 188 (435)
...||+.+.+-|+|.||+++|++++. |++ +.+ . ++.+...+..
T Consensus 92 r~rLa~al~elGr~~EA~~hy~qals-----------------------G~fA~d~a-~----lLglA~Aqfa------- 136 (251)
T COG4700 92 RYRLANALAELGRYHEAVPHYQQALS-----------------------GIFAHDAA-M----LLGLAQAQFA------- 136 (251)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHhc-----------------------cccCCCHH-H----HHHHHHHHHh-------
Confidence 45899999999999999999999843 332 111 1 2222222221
Q ss_pred hHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCccccccc
Q 013867 189 AVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMA 268 (435)
Q Consensus 189 al~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~ 268 (435)
+...+.+. -.++.++.-+|... .++..+-+|.+|+.+|+|.+|+.-|+.++.- +.|
T Consensus 137 -~~~~A~a~-~tLe~l~e~~pa~r------~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~-----------ypg----- 192 (251)
T COG4700 137 -IQEFAAAQ-QTLEDLMEYNPAFR------SPDGHLLFARTLAAQGKYADAESAFEVAISY-----------YPG----- 192 (251)
T ss_pred -hccHHHHH-HHHHHHhhcCCccC------CCCchHHHHHHHHhcCCchhHHHHHHHHHHh-----------CCC-----
Confidence 11112222 23456766665422 2334566789999999999999999999987 333
Q ss_pred chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 013867 269 LEEVALAATFALGQLEAHMGNFGDAEEILTRTLTK 303 (435)
Q Consensus 269 ~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I 303 (435)
| ...+-.+..+.+||+.+||..-|.....-
T Consensus 193 ~-----~ar~~Y~e~La~qgr~~ea~aq~~~v~d~ 222 (251)
T COG4700 193 P-----QARIYYAEMLAKQGRLREANAQYVAVVDT 222 (251)
T ss_pred H-----HHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 1 34567888999999999998877655443
No 143
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.51 E-value=0.00017 Score=49.41 Aligned_cols=30 Identities=20% Similarity=0.375 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 013867 110 SLLAMSTLLYESGNYVEAIEKLQKVENFKN 139 (435)
Q Consensus 110 ~l~nLa~ly~~qGky~eA~~l~~ral~i~e 139 (435)
++++||.+|.++|+|++|+++|++++.+..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~ 30 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALAR 30 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 578999999999999999999999876554
No 144
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.44 E-value=0.00041 Score=53.76 Aligned_cols=59 Identities=24% Similarity=0.194 Sum_probs=53.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 280 LGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 280 La~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
|..+|..+++|++|...+++++.+ +|+-...+..+|.+|..+|++++| ...+++++++.
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~~g~~~~A------~~~l~~~l~~~ 59 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALEL--------DPDDPELWLQRARCLFQLGRYEEA------LEDLERALELS 59 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHh--------CcccchhhHHHHHHHHHhccHHHH------HHHHHHHHHHC
Confidence 467899999999999999999998 788888999999999999998776 78899999765
No 145
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.39 E-value=0.029 Score=63.03 Aligned_cols=170 Identities=17% Similarity=0.108 Sum_probs=118.5
Q ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHH-HHHHHHcCCHHHHHHHHHHH
Q 013867 222 AALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFAL-GQLEAHMGNFGDAEEILTRT 300 (435)
Q Consensus 222 ~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nL-a~ly~~qG~y~eAe~l~~rA 300 (435)
...-++....++.+|+||+.+-.++..-+ +.+++...+ ...+..+.| |++...+|++++|+.+-+++
T Consensus 417 Lvll~aW~~~s~~r~~ea~~li~~l~~~l----~~~~~~~~~--------~l~ae~~aL~a~val~~~~~e~a~~lar~a 484 (894)
T COG2909 417 LVLLQAWLLASQHRLAEAETLIARLEHFL----KAPMHSRQG--------DLLAEFQALRAQVALNRGDPEEAEDLARLA 484 (894)
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHh----CcCcccchh--------hHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 44456777889999999999999988773 212222222 234555554 78889999999999999999
Q ss_pred HHHHHHhhCCCChhH-HHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhc--
Q 013867 301 LTKTEELFGSHHPKV-GVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARG-- 377 (435)
Q Consensus 301 L~I~e~~lG~~HP~v-a~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G-- 377 (435)
+.. ++++++.+ +..+.+++.+..-+|++++| ..+.+++.++.+....-|-.+- +..-.+.++.+||
T Consensus 485 l~~----L~~~~~~~r~~~~sv~~~a~~~~G~~~~A------l~~~~~a~~~a~~~~~~~l~~~-~~~~~s~il~~qGq~ 553 (894)
T COG2909 485 LVQ----LPEAAYRSRIVALSVLGEAAHIRGELTQA------LALMQQAEQMARQHDVYHLALW-SLLQQSEILEAQGQV 553 (894)
T ss_pred HHh----cccccchhhhhhhhhhhHHHHHhchHHHH------HHHHHHHHHHHHHcccHHHHHH-HHHHHHHHHHHhhHH
Confidence 864 67777775 56788999999999998877 7889999999876544444433 3334778889999
Q ss_pred CHHHHhhHhhhhhhH---H-----HHHHHHHHHHhcccchhHHHH
Q 013867 378 GYAEALSVQQNRKDE---G-----ERMKRWAEAAWRNRRVSLAEA 414 (435)
Q Consensus 378 ~yaeal~~~~~r~~e---a-----e~~~~~a~~~~~~~r~~l~~~ 414 (435)
.|++.+..+...... . =.+--.+..+|-..|+.++++
T Consensus 554 ~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ 598 (894)
T COG2909 554 ARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEA 598 (894)
T ss_pred HHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhH
Confidence 566666655222222 1 233457888887777665554
No 146
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.33 E-value=0.0003 Score=53.77 Aligned_cols=52 Identities=21% Similarity=0.301 Sum_probs=44.0
Q ss_pred hhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 013867 79 DESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFK 138 (435)
Q Consensus 79 ~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~ 138 (435)
+|+|++|+.+|++++... |.-......||.+|..+|+|++|+..+++.+...
T Consensus 4 ~~~~~~A~~~~~~~l~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRN--------PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp TTHHHHHHHHHHHHHHHT--------TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred ccCHHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 589999999999999654 6677778899999999999999999999875543
No 147
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.32 E-value=0.003 Score=66.04 Aligned_cols=119 Identities=19% Similarity=0.179 Sum_probs=96.6
Q ss_pred HHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 013867 224 LSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTK 303 (435)
Q Consensus 224 ~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I 303 (435)
..+-.++...++|++|+.++++-.+. + |+ + ..-|+.+|..+++-.+|..++.++|
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~--------~----------pe---v--~~~LA~v~l~~~~E~~AI~ll~~aL-- 227 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRER--------D----------PE---V--AVLLARVYLLMNEEVEAIRLLNEAL-- 227 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhc--------C----------Cc---H--HHHHHHHHHhcCcHHHHHHHHHHHH--
Confidence 33456778899999999999885533 1 11 1 1248899999999999999999999
Q ss_pred HHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHHHh
Q 013867 304 TEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEAL 383 (435)
Q Consensus 304 ~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yaeal 383 (435)
.++|.-+..|+--|..+..+++++.| .++.++|.++. |+-...-..|+.+|...|+|++||
T Consensus 228 ------~~~p~d~~LL~~Qa~fLl~k~~~~lA------L~iAk~av~ls-------P~~f~~W~~La~~Yi~~~d~e~AL 288 (395)
T PF09295_consen 228 ------KENPQDSELLNLQAEFLLSKKKYELA------LEIAKKAVELS-------PSEFETWYQLAECYIQLGDFENAL 288 (395)
T ss_pred ------HhCCCCHHHHHHHHHHHHhcCCHHHH------HHHHHHHHHhC-------chhHHHHHHHHHHHHhcCCHHHHH
Confidence 56777799999999999999998766 88899988887 676777778999999999999998
Q ss_pred hHh
Q 013867 384 SVQ 386 (435)
Q Consensus 384 ~~~ 386 (435)
..-
T Consensus 289 laL 291 (395)
T PF09295_consen 289 LAL 291 (395)
T ss_pred HHH
Confidence 653
No 148
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.29 E-value=0.0044 Score=64.40 Aligned_cols=98 Identities=14% Similarity=0.085 Sum_probs=79.0
Q ss_pred HHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 013867 227 GEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEE 306 (435)
Q Consensus 227 a~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~ 306 (435)
|+-...+|+|.+|.+.|..||.| +++... +.+-.+.|.|.++...|+..||..--..|+.|
T Consensus 256 gN~~fk~G~y~~A~E~Yteal~i--------dP~n~~--------~naklY~nra~v~~rLgrl~eaisdc~~Al~i--- 316 (486)
T KOG0550|consen 256 GNDAFKNGNYRKAYECYTEALNI--------DPSNKK--------TNAKLYGNRALVNIRLGRLREAISDCNEALKI--- 316 (486)
T ss_pred hhhHhhccchhHHHHHHHHhhcC--------Cccccc--------hhHHHHHHhHhhhcccCCchhhhhhhhhhhhc---
Confidence 55667899999999999999999 121221 12335679999999999999999999999998
Q ss_pred hhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcC
Q 013867 307 LFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKA 354 (435)
Q Consensus 307 ~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~ 354 (435)
.|.....|---|..|..-++|++| ..-|++|+..-+.
T Consensus 317 -----D~syikall~ra~c~l~le~~e~A------V~d~~~a~q~~~s 353 (486)
T KOG0550|consen 317 -----DSSYIKALLRRANCHLALEKWEEA------VEDYEKAMQLEKD 353 (486)
T ss_pred -----CHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhhccc
Confidence 466778888899999999998877 6778888776654
No 149
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.27 E-value=0.032 Score=62.35 Aligned_cols=200 Identities=19% Similarity=0.249 Sum_probs=105.0
Q ss_pred hcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHHHHHh
Q 013867 80 ESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVA-AMEALAGLYLQ 158 (435)
Q Consensus 80 G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~va-ale~L~g~~~~ 158 (435)
|...+|+.+|.||-.. .-|-.+|.++|.|++|.++.+.- --|.+. |.-+-++ |++
T Consensus 814 gMlEeA~~lYr~ckR~----------------DLlNKlyQs~g~w~eA~eiAE~~-------DRiHLr~Tyy~yA~-~Le 869 (1416)
T KOG3617|consen 814 GMLEEALILYRQCKRY----------------DLLNKLYQSQGMWSEAFEIAETK-------DRIHLRNTYYNYAK-YLE 869 (1416)
T ss_pred hhHHHHHHHHHHHHHH----------------HHHHHHHHhcccHHHHHHHHhhc-------cceehhhhHHHHHH-HHH
Confidence 4677999999998632 23667899999999998866531 111000 1101111 111
Q ss_pred cCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchHH
Q 013867 159 LGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLL 238 (435)
Q Consensus 159 ~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~e 238 (435)
...| ....++.+++.+.-.++--.-|...-++|...+.... ++ ....-.|..+.++|+.|-
T Consensus 870 ar~D------i~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~----------d~---~L~~WWgqYlES~Gemda 930 (1416)
T KOG3617|consen 870 ARRD------IEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKR----------DE---SLYSWWGQYLESVGEMDA 930 (1416)
T ss_pred hhcc------HHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhcc----------ch---HHHHHHHHHHhcccchHH
Confidence 1111 2234455555542112211222223333333332221 12 222235777889999999
Q ss_pred HHHHHHHHHHHHHHhcccCCCCCcccc----cccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChh
Q 013867 239 AKKFYQKVIEVLAEQKDFSDMNTLGSC----NMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPK 314 (435)
Q Consensus 239 Ae~ly~rAL~I~~~~~~~~~~~~l~~~----~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~ 314 (435)
|..+|..|-+-+...+- +-..|.. ....+--..++-.-||.-|..+|++.+|..+|+||-+.-..+-=-+--+
T Consensus 931 Al~~Y~~A~D~fs~VrI---~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd 1007 (1416)
T KOG3617|consen 931 ALSFYSSAKDYFSMVRI---KCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKEND 1007 (1416)
T ss_pred HHHHHHHhhhhhhheee---EeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999988776543221 1111100 0000000124456799999999999999999999876544332222223
Q ss_pred HHHHHHHHHHH
Q 013867 315 VGVVLTCLALM 325 (435)
Q Consensus 315 va~~L~nLA~l 325 (435)
.-.-|-|||.+
T Consensus 1008 ~~d~L~nlal~ 1018 (1416)
T KOG3617|consen 1008 MKDRLANLALM 1018 (1416)
T ss_pred HHHHHHHHHhh
Confidence 44445555544
No 150
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.26 E-value=0.077 Score=59.81 Aligned_cols=262 Identities=13% Similarity=-0.022 Sum_probs=146.0
Q ss_pred HHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcch----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhh
Q 013867 66 INYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESW----RGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSI 141 (435)
Q Consensus 66 ~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~----~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~ 141 (435)
+-+|+.+. ++.+|++|..+..+.......- +|+- .|..--=-|.+...+|+.++|+.+.+.++......
T Consensus 419 ll~aW~~~----s~~r~~ea~~li~~l~~~l~~~---~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~ 491 (894)
T COG2909 419 LLQAWLLA----SQHRLAEAETLIARLEHFLKAP---MHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEA 491 (894)
T ss_pred HHHHHHHH----HccChHHHHHHHHHHHHHhCcC---cccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccc
Confidence 34555553 6789999999999987766542 2221 22222223556778999999999999997654322
Q ss_pred -HHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchh
Q 013867 142 -LGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTG 220 (435)
Q Consensus 142 -L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~ 220 (435)
-..++..+-.++-..+-.|+++.|..+....-.+...++. ..+. .
T Consensus 492 ~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~------~~l~----------------------------~ 537 (894)
T COG2909 492 AYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDV------YHLA----------------------------L 537 (894)
T ss_pred cchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHccc------HHHH----------------------------H
Confidence 1122222222333333345554444333322222222111 0000 0
Q ss_pred HHHHHHHHHHHHhh--chHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013867 221 SAALSYGEYLHATR--NFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILT 298 (435)
Q Consensus 221 ~~a~~la~~~~~~G--~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~ 298 (435)
.+.+--+.++..|| .|++.+.-|.+.-+-....+. .-+ =.+.--++++...-+++.++.-..
T Consensus 538 ~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~-----~~~-----------f~~~~r~~ll~~~~r~~~~~~ear 601 (894)
T COG2909 538 WSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKP-----RHE-----------FLVRIRAQLLRAWLRLDLAEAEAR 601 (894)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcc-----cch-----------hHHHHHHHHHHHHHHHhhhhHHhh
Confidence 12222366788889 455555545444333222221 101 023445666766677999998888
Q ss_pred HHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHH-HHhc
Q 013867 299 RTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVA-LARG 377 (435)
Q Consensus 299 rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~-~a~G 377 (435)
..+++.....-..|-.-+.. .+||.++..+|++++| -....+....+...+ .|++.-.+.+-....+ +.||
T Consensus 602 ~~~~~~~~~~~~~~~~~~~~-~~LA~l~~~~Gdl~~A------~~~l~~~~~l~~~~~-~~~~~~a~~~~v~~~lwl~qg 673 (894)
T COG2909 602 LGIEVGSVYTPQPLLSRLAL-SMLAELEFLRGDLDKA------LAQLDELERLLLNGQ-YHVDYLAAAYKVKLILWLAQG 673 (894)
T ss_pred hcchhhhhcccchhHHHHHH-HHHHHHHHhcCCHHHH------HHHHHHHHHHhcCCC-CCchHHHHHHHhhHHHhcccC
Confidence 88887765554444444433 7999999999999888 344555555555444 5666333333333333 4899
Q ss_pred CHHHHhhHhhhhhhH
Q 013867 378 GYAEALSVQQNRKDE 392 (435)
Q Consensus 378 ~yaeal~~~~~r~~e 392 (435)
+++++-....+...+
T Consensus 674 ~~~~a~~~l~~s~~~ 688 (894)
T COG2909 674 DKELAAEWLLKSGDP 688 (894)
T ss_pred CHHHHHHHHHhccCc
Confidence 999887766554444
No 151
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.016 Score=60.00 Aligned_cols=98 Identities=17% Similarity=0.219 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013867 222 AALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTL 301 (435)
Q Consensus 222 ~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL 301 (435)
+.+|+|.+|..+++|.+|+....++|++ .. + .+-+|+.-|+.|..+|+|+.|+..|++|+
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~---~~----~-------------N~KALyRrG~A~l~~~e~~~A~~df~ka~ 318 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLEL---DP----N-------------NVKALYRRGQALLALGEYDLARDDFQKAL 318 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhc---CC----C-------------chhHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 4567888999999999999999999998 11 1 23578999999999999999999999999
Q ss_pred HHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 302 TKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 302 ~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
++. |+.-.+..-|.-|..-++ ++.+. .-.+|.+.+.-.
T Consensus 319 k~~-----P~Nka~~~el~~l~~k~~---~~~~k-----ekk~y~~mF~k~ 356 (397)
T KOG0543|consen 319 KLE-----PSNKAARAELIKLKQKIR---EYEEK-----EKKMYANMFAKL 356 (397)
T ss_pred HhC-----CCcHHHHHHHHHHHHHHH---HHHHH-----HHHHHHHHhhcc
Confidence 873 444444444444444333 33221 257788877665
No 152
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.22 E-value=0.0052 Score=66.43 Aligned_cols=62 Identities=11% Similarity=0.088 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 276 ATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 276 ~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
+..-+|..+..+|++++|+..|+||+++. |+ +.+++.+|.+|..+|++++| ...|++|+.+-
T Consensus 422 ~~~ala~~~~~~g~~~~A~~~l~rAl~L~--------ps-~~a~~~lG~~~~~~G~~~eA------~~~~~~A~~L~ 483 (517)
T PRK10153 422 IYEILAVQALVKGKTDEAYQAINKAIDLE--------MS-WLNYVLLGKVYELKGDNRLA------ADAYSTAFNLR 483 (517)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC--------CC-HHHHHHHHHHHHHcCCHHHH------HHHHHHHHhcC
Confidence 34567888888999999999999999986 54 68999999999999998876 89999998765
No 153
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.17 E-value=0.0085 Score=64.81 Aligned_cols=75 Identities=12% Similarity=-0.018 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013867 221 SAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRT 300 (435)
Q Consensus 221 ~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rA 300 (435)
.+...+|..+..+|++++|+..|+||++.. + +.-++..+|.+|..+|++++|.+.|++|
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--------p-------------s~~a~~~lG~~~~~~G~~~eA~~~~~~A 479 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDLE--------M-------------SWLNYVLLGKVYELKGDNRLAADAYSTA 479 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--------C-------------CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344445666667899999999999999881 1 1135778999999999999999999999
Q ss_pred HHHHHHhhCCCChhHHHHHHHH
Q 013867 301 LTKTEELFGSHHPKVGVVLTCL 322 (435)
Q Consensus 301 L~I~e~~lG~~HP~va~~L~nL 322 (435)
+.+ .|.+|. -....||
T Consensus 480 ~~L-----~P~~pt-~~~~~~~ 495 (517)
T PRK10153 480 FNL-----RPGENT-LYWIENL 495 (517)
T ss_pred Hhc-----CCCCch-HHHHHhc
Confidence 874 677774 3344443
No 154
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.16 E-value=0.21 Score=49.19 Aligned_cols=188 Identities=13% Similarity=0.096 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhc
Q 013867 107 RGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKT 186 (435)
Q Consensus 107 ~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~e 186 (435)
.|..|..-+..|+.--+|++|-..+.+|.+-.|..... +.+| ..+...+-++..-.+ +.|
T Consensus 30 aas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrsl-----------------fhAA-KayEqaamLake~~k--lsE 89 (308)
T KOG1585|consen 30 AASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSL-----------------FHAA-KAYEQAAMLAKELSK--LSE 89 (308)
T ss_pred hHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccH-----------------HHHH-HHHHHHHHHHHHHHH--hHH
Confidence 34444445566788888888888888876544422110 1111 112222222221111 333
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCccccc
Q 013867 187 YGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCN 266 (435)
Q Consensus 187 aeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~ 266 (435)
......+|+...+ -.|. |.+...++.-|.=.-..-+-++|.++|+|+++|.+....
T Consensus 90 --vvdl~eKAs~lY~--E~Gs---------pdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr----------- 145 (308)
T KOG1585|consen 90 --VVDLYEKASELYV--ECGS---------PDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDR----------- 145 (308)
T ss_pred --HHHHHHHHHHHHH--HhCC---------cchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccch-----------
Confidence 3334455554432 2233 222223333232223445789999999999999764221
Q ss_pred ccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCh---hHHHHHHHHHHHHHHhhhhhhhhhhHHHHH
Q 013867 267 MALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHP---KVGVVLTCLALMFRNKAMQEHSSALLIQEG 343 (435)
Q Consensus 267 ~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP---~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~ 343 (435)
++...--+...+.+|....+|+||-..+.+--.+..++---..| -|+.+| ||-...+| ..|+.
T Consensus 146 ---~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~il-----v~L~~~Dy------v~aek 211 (308)
T KOG1585|consen 146 ---DQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAIL-----VYLYAHDY------VQAEK 211 (308)
T ss_pred ---HHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHH-----HHhhHHHH------HHHHH
Confidence 11111234578899999999999999999988888887665555 333333 33333343 34477
Q ss_pred HHHHHHHHh
Q 013867 344 LYRRALEFL 352 (435)
Q Consensus 344 Ly~rAL~I~ 352 (435)
.|+.+-.|-
T Consensus 212 c~r~~~qip 220 (308)
T KOG1585|consen 212 CYRDCSQIP 220 (308)
T ss_pred HhcchhcCc
Confidence 777766554
No 155
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.14 E-value=0.02 Score=58.74 Aligned_cols=134 Identities=14% Similarity=0.095 Sum_probs=87.4
Q ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHH-HHHHHHHHcCCHHHHHHHHHHHH
Q 013867 223 ALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATF-ALGQLEAHMGNFGDAEEILTRTL 301 (435)
Q Consensus 223 a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~-nLa~ly~~qG~y~eAe~l~~rAL 301 (435)
-+++|.+.+..-.|.||++.|.|+|.- .. .. .++| ++|..|.++.=|+-+.+++
T Consensus 154 qLSLAsvhYmR~HYQeAIdvYkrvL~d---n~-----ey-------------~alNVy~ALCyyKlDYydvsqevl---- 208 (557)
T KOG3785|consen 154 QLSLASVHYMRMHYQEAIDVYKRVLQD---NP-----EY-------------IALNVYMALCYYKLDYYDVSQEVL---- 208 (557)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhc---Ch-----hh-------------hhhHHHHHHHHHhcchhhhHHHHH----
Confidence 367889989999999999999999865 11 12 2344 7999999999999887654
Q ss_pred HHHHHhhCCCChhHHHHHHHHHHHHHH--hhhhhhh----------hhhHHHHHHHHHHHHHhcCCCCCC----Cc----
Q 013867 302 TKTEELFGSHHPKVGVVLTCLALMFRN--KAMQEHS----------SALLIQEGLYRRALEFLKAPPLES----EG---- 361 (435)
Q Consensus 302 ~I~e~~lG~~HP~va~~L~nLA~ly~~--qG~~e~A----------~~~~~Ae~Ly~rAL~I~k~~~~~h----p~---- 361 (435)
..+- ..||+--.+.|-.|....+ .|+..++ ++|.+++.+.+--|-+++- |.+. |.
T Consensus 209 ~vYL----~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrn-gEgALqVLP~L~~~ 283 (557)
T KOG3785|consen 209 KVYL----RQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRN-GEGALQVLPSLMKH 283 (557)
T ss_pred HHHH----HhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeC-CccHHHhchHHHhh
Confidence 3333 3677776776665554432 2333222 2455677777766655542 1111 21
Q ss_pred hhhhhccHHHHHHHhcCHHHHhhHh
Q 013867 362 VETKVDRTDIVALARGGYAEALSVQ 386 (435)
Q Consensus 362 ~a~~l~nla~~~~a~G~yaeal~~~ 386 (435)
+...--|+.+-|+.|++..||..+.
T Consensus 284 IPEARlNL~iYyL~q~dVqeA~~L~ 308 (557)
T KOG3785|consen 284 IPEARLNLIIYYLNQNDVQEAISLC 308 (557)
T ss_pred ChHhhhhheeeecccccHHHHHHHH
Confidence 2223347888899999999997764
No 156
>PRK15331 chaperone protein SicA; Provisional
Probab=97.10 E-value=0.013 Score=54.08 Aligned_cols=111 Identities=19% Similarity=0.115 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 273 ALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 273 ~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
++..+...|--+..+|||++|+.+|+-. .+ +++..|+. ...||.+|+.+++|++| ..+|-.|..+.
T Consensus 36 ~le~iY~~Ay~~y~~Gk~~eA~~~F~~L-~~----~d~~n~~Y---~~GLaa~~Q~~k~y~~A------i~~Y~~A~~l~ 101 (165)
T PRK15331 36 MMDGLYAHAYEFYNQGRLDEAETFFRFL-CI----YDFYNPDY---TMGLAAVCQLKKQFQKA------CDLYAVAFTLL 101 (165)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHH-HH----hCcCcHHH---HHHHHHHHHHHHHHHHH------HHHHHHHHHcc
Confidence 4567778888889999999999999644 33 66666775 68999999999998876 89998888776
Q ss_pred cCCCCCCCchhhhhccHHHHHHHhcCHHHHhhHhhhh--hhHHHHHHHHHHHHh
Q 013867 353 KAPPLESEGVETKVDRTDIVALARGGYAEALSVQQNR--KDEGERMKRWAEAAW 404 (435)
Q Consensus 353 k~~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~~~r--~~eae~~~~~a~~~~ 404 (435)
+ +.|. .....+.+++..|+.++|...++.. ..+=..++.+|..+-
T Consensus 102 ~----~dp~---p~f~agqC~l~l~~~~~A~~~f~~a~~~~~~~~l~~~A~~~L 148 (165)
T PRK15331 102 K----NDYR---PVFFTGQCQLLMRKAAKARQCFELVNERTEDESLRAKALVYL 148 (165)
T ss_pred c----CCCC---ccchHHHHHHHhCCHHHHHHHHHHHHhCcchHHHHHHHHHHH
Confidence 3 3332 2446899999999999998875222 344566777776654
No 157
>PLN02789 farnesyltranstransferase
Probab=97.07 E-value=0.012 Score=59.94 Aligned_cols=131 Identities=9% Similarity=0.009 Sum_probs=84.4
Q ss_pred hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcC-CHHHHHHHH
Q 013867 219 TGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMG-NFGDAEEIL 297 (435)
Q Consensus 219 ~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG-~y~eAe~l~ 297 (435)
...+...+-.++...+++++|..++.++|++ . |++. .+.+..+.++..+| ++++|..++
T Consensus 36 ~~~a~~~~ra~l~~~e~serAL~lt~~aI~l-----------n-------P~~y--taW~~R~~iL~~L~~~l~eeL~~~ 95 (320)
T PLN02789 36 FREAMDYFRAVYASDERSPRALDLTADVIRL-----------N-------PGNY--TVWHFRRLCLEALDADLEEELDFA 95 (320)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-----------C-------chhH--HHHHHHHHHHHHcchhHHHHHHHH
Confidence 3344444555677788888888888888877 1 2222 34567777777777 577888888
Q ss_pred HHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhc
Q 013867 298 TRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARG 377 (435)
Q Consensus 298 ~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G 377 (435)
.+++.+ +|+-..+.++.+.++...|+.. +.++..++.++|++- |.-.-.-++++.++...|
T Consensus 96 ~~~i~~--------npknyqaW~~R~~~l~~l~~~~----~~~el~~~~kal~~d-------pkNy~AW~~R~w~l~~l~ 156 (320)
T PLN02789 96 EDVAED--------NPKNYQIWHHRRWLAEKLGPDA----ANKELEFTRKILSLD-------AKNYHAWSHRQWVLRTLG 156 (320)
T ss_pred HHHHHH--------CCcchHHhHHHHHHHHHcCchh----hHHHHHHHHHHHHhC-------cccHHHHHHHHHHHHHhh
Confidence 877764 6666666788887777776531 112356666666554 222335566777777777
Q ss_pred CHHHHhhHhhh
Q 013867 378 GYAEALSVQQN 388 (435)
Q Consensus 378 ~yaeal~~~~~ 388 (435)
+|.+++....+
T Consensus 157 ~~~eeL~~~~~ 167 (320)
T PLN02789 157 GWEDELEYCHQ 167 (320)
T ss_pred hHHHHHHHHHH
Confidence 77777766544
No 158
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.05 E-value=0.14 Score=43.86 Aligned_cols=196 Identities=22% Similarity=0.247 Sum_probs=118.1
Q ss_pred hhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Q 013867 79 DESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQ 158 (435)
Q Consensus 79 ~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~ 158 (435)
.+.+.+++..+...+.. ...+.....+..++..+...++|.+|++.++++........... ... ..+.+..
T Consensus 72 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~ 142 (291)
T COG0457 72 LGRLEEALELLEKALEL------ELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAE--ALL-ALGALYE 142 (291)
T ss_pred cccHHHHHHHHHHHHhh------hhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHH--HHH-HHHHHHH
Confidence 45677777777777654 23456677777778888888888888877777654322110000 000 0001222
Q ss_pred cCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchHH
Q 013867 159 LGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLL 238 (435)
Q Consensus 159 ~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~e 238 (435)
++. +..+ .....+++. ..+.. ..........+..+...|++++
T Consensus 143 ~~~----------------------~~~a--~~~~~~~~~-----~~~~~--------~~~~~~~~~~~~~~~~~~~~~~ 185 (291)
T COG0457 143 LGD----------------------YEEA--LELYEKALE-----LDPEL--------NELAEALLALGALLEALGRYEE 185 (291)
T ss_pred cCC----------------------HHHH--HHHHHHHHh-----cCCCc--------cchHHHHHHhhhHHHHhcCHHH
Confidence 222 2211 112222211 11100 0112233344445778899999
Q ss_pred HHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHH
Q 013867 239 AKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVV 318 (435)
Q Consensus 239 Ae~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~ 318 (435)
|...+.+++.+... .. .....+++..|..+|++++|...+.+++..... ....
T Consensus 186 a~~~~~~~~~~~~~--------~~-----------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--------~~~~ 238 (291)
T COG0457 186 ALELLEKALKLNPD--------DD-----------AEALLNLGLLYLKLGKYEEALEYYEKALELDPD--------NAEA 238 (291)
T ss_pred HHHHHHHHHhhCcc--------cc-----------hHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc--------cHHH
Confidence 99999999998311 00 134678999999999999999999999998776 6667
Q ss_pred HHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhc
Q 013867 319 LTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLK 353 (435)
Q Consensus 319 L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k 353 (435)
+..++..+...|.++++ ...+.+++....
T Consensus 239 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~ 267 (291)
T COG0457 239 LYNLALLLLELGRYEEA------LEALEKALELDP 267 (291)
T ss_pred HhhHHHHHHHcCCHHHH------HHHHHHHHHhCc
Confidence 77788888766655554 677777777663
No 159
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.05 E-value=0.016 Score=61.29 Aligned_cols=135 Identities=19% Similarity=0.139 Sum_probs=88.3
Q ss_pred hcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhc
Q 013867 80 ESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQL 159 (435)
Q Consensus 80 G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~ 159 (435)
|+|++|+..+..-+ .++|+-.-.+...+.++...|++.+|++.++++++......-.. =+++..++..
T Consensus 320 ~~~d~A~~~l~~L~--------~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~----~~~a~all~~ 387 (484)
T COG4783 320 GQYDEALKLLQPLI--------AAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQ----LNLAQALLKG 387 (484)
T ss_pred cccchHHHHHHHHH--------HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHH----HHHHHHHHhc
Confidence 44445555554433 45677777788899999999999999999999988776431111 1455667777
Q ss_pred CCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchHHH
Q 013867 160 GQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLLA 239 (435)
Q Consensus 160 g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eA 239 (435)
|...+|....+ -+.... .++..-+...+++-.. + |+ ...+...+|+.|...|+|++|
T Consensus 388 g~~~eai~~L~----~~~~~~---p~dp~~w~~LAqay~~----~-g~-----------~~~a~~A~AE~~~~~G~~~~A 444 (484)
T COG4783 388 GKPQEAIRILN----RYLFND---PEDPNGWDLLAQAYAE----L-GN-----------RAEALLARAEGYALAGRLEQA 444 (484)
T ss_pred CChHHHHHHHH----HHhhcC---CCCchHHHHHHHHHHH----h-Cc-----------hHHHHHHHHHHHHhCCCHHHH
Confidence 87765543322 222222 2233444445544332 2 32 234566788999999999999
Q ss_pred HHHHHHHHHH
Q 013867 240 KKFYQKVIEV 249 (435)
Q Consensus 240 e~ly~rAL~I 249 (435)
+.++.+|.+-
T Consensus 445 ~~~l~~A~~~ 454 (484)
T COG4783 445 IIFLMRASQQ 454 (484)
T ss_pred HHHHHHHHHh
Confidence 9999999987
No 160
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=96.91 E-value=0.093 Score=53.86 Aligned_cols=220 Identities=16% Similarity=0.148 Sum_probs=127.6
Q ss_pred HHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhh
Q 013867 62 VLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSI 141 (435)
Q Consensus 62 A~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~ 141 (435)
+.+|.++-..+ .+....|+|..|+++..+.|+|. ||-|..+-..|..|...|+...||.=++++..+....
T Consensus 152 ~~e~~~l~~ql-~s~~~~GD~~~ai~~i~~llEi~--------~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~Dn 222 (504)
T KOG0624|consen 152 IQEHWVLVQQL-KSASGSGDCQNAIEMITHLLEIQ--------PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDN 222 (504)
T ss_pred HHHHHHHHHHH-HHHhcCCchhhHHHHHHHHHhcC--------cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccc
Confidence 44555555444 33346789999999999999887 8999999999999999999999999988886554322
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhH
Q 013867 142 LGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGS 221 (435)
Q Consensus 142 L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~ 221 (435)
- .++-...-+++..|....++.....|+.+- + |+.--+..-+-++.+++.+-
T Consensus 223 T----e~~ykis~L~Y~vgd~~~sL~~iRECLKld----p----dHK~Cf~~YKklkKv~K~le---------------- 274 (504)
T KOG0624|consen 223 T----EGHYKISQLLYTVGDAENSLKEIRECLKLD----P----DHKLCFPFYKKLKKVVKSLE---------------- 274 (504)
T ss_pred h----HHHHHHHHHHHhhhhHHHHHHHHHHHHccC----c----chhhHHHHHHHHHHHHHHHH----------------
Confidence 1 112222333445554333332223333221 1 11112222222222222110
Q ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013867 222 AALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTL 301 (435)
Q Consensus 222 ~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL 301 (435)
-+.-...+++|.++.+-+++.|.- .|...+ +++...--+-..|..-|++.||..-..++|
T Consensus 275 ----s~e~~ie~~~~t~cle~ge~vlk~---------ep~~~~-------ir~~~~r~~c~C~~~d~~~~eAiqqC~evL 334 (504)
T KOG0624|consen 275 ----SAEQAIEEKHWTECLEAGEKVLKN---------EPEETM-------IRYNGFRVLCTCYREDEQFGEAIQQCKEVL 334 (504)
T ss_pred ----HHHHHHhhhhHHHHHHHHHHHHhc---------CCcccc-------eeeeeeheeeecccccCCHHHHHHHHHHHH
Confidence 012234567777777777777644 011010 011122234455667777888877777777
Q ss_pred HHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 302 TKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 302 ~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
.| .|+-+.+|...|..|-.--.|+.| +.=|++|++.-
T Consensus 335 ~~--------d~~dv~~l~dRAeA~l~dE~YD~A------I~dye~A~e~n 371 (504)
T KOG0624|consen 335 DI--------DPDDVQVLCDRAEAYLGDEMYDDA------IHDYEKALELN 371 (504)
T ss_pred hc--------CchHHHHHHHHHHHHhhhHHHHHH------HHHHHHHHhcC
Confidence 65 577777777777777766665544 66677776654
No 161
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=96.89 E-value=0.31 Score=54.34 Aligned_cols=250 Identities=14% Similarity=0.048 Sum_probs=143.9
Q ss_pred cHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHHhc
Q 013867 81 SYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENF-KNSILGVRVAAMEALAGLYLQL 159 (435)
Q Consensus 81 ~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i-~e~~L~i~vaale~L~g~~~~~ 159 (435)
...++++.||+|+++. +++| .+++++|.-|..|++.+.|.+..++++++ ..... .+|--|+-+.-.+
T Consensus 459 ~h~kslqale~av~~d-----~~dp---~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~----~~whLLALvlSa~ 526 (799)
T KOG4162|consen 459 LHKKSLQALEEAVQFD-----PTDP---LVIFYLALQYAEQRQLTSALDYAREALALNRGDSA----KAWHLLALVLSAQ 526 (799)
T ss_pred HHHHHHHHHHHHHhcC-----CCCc---hHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccH----HHHHHHHHHHhhh
Confidence 4557888888888655 4445 78899999999999999999999999887 33321 1222222222223
Q ss_pred CCCcchHHHHHHHHHHHHhcC---------CCchhchhhHH---HHHHHHHHH---HHHhcCCCcccccccccchhHHHH
Q 013867 160 GQDDTSSVVADKCLQLCEKHK---------PENYKTYGAVN---SRANAVKGL---VELAHGNLESGLQEEEGCTGSAAL 224 (435)
Q Consensus 160 g~~~~A~~~~~~~~~l~~~~~---------~~~~~eaeal~---~~a~Ai~~~---~~~lgg~h~~a~~~~~~~~~~~a~ 224 (435)
+++..|+.+.+..++-..... ..++++.+... ....++... ++..+++ +...-
T Consensus 527 kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~------------g~~~~ 594 (799)
T KOG4162|consen 527 KRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDE------------GKLLR 594 (799)
T ss_pred hhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhh------------hhhhh
Confidence 444555555554443222100 01122221111 111111110 0011110 00111
Q ss_pred HHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCC-----C--CcccccccchHHHHHHHH-HHHHHHHHcCCHHHHHHH
Q 013867 225 SYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDM-----N--TLGSCNMALEEVALAATF-ALGQLEAHMGNFGDAEEI 296 (435)
Q Consensus 225 ~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~-----~--~l~~~~~~~~~~~l~~l~-nLa~ly~~qG~y~eAe~l 296 (435)
.-+.+.-.+++-.+|...+++++.+.+.... +-. | +.-+.++. .+.+...+. -.|.++...+.-++|--+
T Consensus 595 lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~-~~~se~~Lp~s~~~~~~~~-~~~~~~~lwllaa~~~~~~~~~~~a~~C 672 (799)
T KOG4162|consen 595 LKAGLHLALSQPTDAISTSRYLSSLVASQLK-SAGSELKLPSSTVLPGPDS-LWYLLQKLWLLAADLFLLSGNDDEARSC 672 (799)
T ss_pred hhcccccCcccccccchhhHHHHHHHHhhhh-hcccccccCcccccCCCCc-hHHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 1122333466778888888888888763222 111 0 01111111 112223333 457788888889999989
Q ss_pred HHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHh
Q 013867 297 LTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALAR 376 (435)
Q Consensus 297 ~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~ 376 (435)
+.+|-.|. |..+.+++-.|.++..+|+.++| ...|.-|+.+ .|+|+. ++.-+|.++...
T Consensus 673 L~Ea~~~~--------~l~~~~~~~~G~~~~~~~~~~EA------~~af~~Al~l----dP~hv~---s~~Ala~~lle~ 731 (799)
T KOG4162|consen 673 LLEASKID--------PLSASVYYLRGLLLEVKGQLEEA------KEAFLVALAL----DPDHVP---SMTALAELLLEL 731 (799)
T ss_pred HHHHHhcc--------hhhHHHHHHhhHHHHHHHhhHHH------HHHHHHHHhc----CCCCcH---HHHHHHHHHHHh
Confidence 99988886 88999999999999999998876 6777777765 477776 333467777666
Q ss_pred c
Q 013867 377 G 377 (435)
Q Consensus 377 G 377 (435)
|
T Consensus 732 G 732 (799)
T KOG4162|consen 732 G 732 (799)
T ss_pred C
Confidence 6
No 162
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=96.88 E-value=0.002 Score=42.82 Aligned_cols=32 Identities=19% Similarity=0.376 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 013867 108 GISLLAMSTLLYESGNYVEAIEKLQKVENFKN 139 (435)
Q Consensus 108 A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e 139 (435)
|.++.++|.+|..+|+|++|++.|++++++.+
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 56899999999999999999999999987654
No 163
>PRK15331 chaperone protein SicA; Provisional
Probab=96.86 E-value=0.0074 Score=55.70 Aligned_cols=97 Identities=9% Similarity=-0.011 Sum_probs=72.7
Q ss_pred hHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013867 220 GSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTR 299 (435)
Q Consensus 220 ~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~r 299 (435)
......+|--+..+|+|++|+.+|+--.-. + + . ++ .-+.+||.+++.+|+|++|..+|..
T Consensus 37 le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~-----d---~---~----n~-----~Y~~GLaa~~Q~~k~y~~Ai~~Y~~ 96 (165)
T PRK15331 37 MDGLYAHAYEFYNQGRLDEAETFFRFLCIY-----D---F---Y----NP-----DYTMGLAAVCQLKKQFQKACDLYAV 96 (165)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----C---c---C----cH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566667899999999999866544 1 1 0 12 2357999999999999999999999
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHH
Q 013867 300 TLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALE 350 (435)
Q Consensus 300 AL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~ 350 (435)
|..+.. +.|.. ....|..|-..|+.++| ...|.-+++
T Consensus 97 A~~l~~-----~dp~p---~f~agqC~l~l~~~~~A------~~~f~~a~~ 133 (165)
T PRK15331 97 AFTLLK-----NDYRP---VFFTGQCQLLMRKAAKA------RQCFELVNE 133 (165)
T ss_pred HHHccc-----CCCCc---cchHHHHHHHhCCHHHH------HHHHHHHHh
Confidence 988754 44433 67899999999997776 677777666
No 164
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.84 E-value=0.007 Score=54.26 Aligned_cols=92 Identities=15% Similarity=0.095 Sum_probs=71.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCC
Q 013867 280 LGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLES 359 (435)
Q Consensus 280 La~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~h 359 (435)
-|..+..-|+.++|.++|.|||... |.-+++|||.|..|+-||+.++| ..=..+|+++. |+..
T Consensus 49 ~~valaE~g~Ld~AlE~F~qal~l~--------P~raSayNNRAQa~RLq~~~e~A------LdDLn~AleLa---g~~t 111 (175)
T KOG4555|consen 49 KAIALAEAGDLDGALELFGQALCLA--------PERASAYNNRAQALRLQGDDEEA------LDDLNKALELA---GDQT 111 (175)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhc--------ccchHhhccHHHHHHHcCChHHH------HHHHHHHHHhc---Cccc
Confidence 3667778899999999999999874 67789999999999999998877 67788999886 3332
Q ss_pred CchhhhhccHHHHHHHhcCHHHHhhHhhh
Q 013867 360 EGVETKVDRTDIVALARGGYAEALSVQQN 388 (435)
Q Consensus 360 p~~a~~l~nla~~~~a~G~yaeal~~~~~ 388 (435)
-..-.+.-.++++|..+|+-+.|-.-++.
T Consensus 112 rtacqa~vQRg~lyRl~g~dd~AR~DFe~ 140 (175)
T KOG4555|consen 112 RTACQAFVQRGLLYRLLGNDDAARADFEA 140 (175)
T ss_pred hHHHHHHHHHHHHHHHhCchHHHHHhHHH
Confidence 22223344688999999988877665543
No 165
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=96.84 E-value=0.047 Score=60.28 Aligned_cols=172 Identities=17% Similarity=0.155 Sum_probs=110.8
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcC-CCch
Q 013867 106 WRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHK-PENY 184 (435)
Q Consensus 106 ~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~-~~~~ 184 (435)
-.-..---++.++.+-|=-.+|+..|+|- ..+..+.-+|...|+...|.....+. +++.- +.-|
T Consensus 396 p~Wq~q~~laell~slGitksAl~I~Erl------------emw~~vi~CY~~lg~~~kaeei~~q~---lek~~d~~ly 460 (777)
T KOG1128|consen 396 PIWQLQRLLAELLLSLGITKSALVIFERL------------EMWDPVILCYLLLGQHGKAEEINRQE---LEKDPDPRLY 460 (777)
T ss_pred CcchHHHHHHHHHHHcchHHHHHHHHHhH------------HHHHHHHHHHHHhcccchHHHHHHHH---hcCCCcchhH
Confidence 33444456788888899888888888773 23455566677777666655332221 11111 1001
Q ss_pred ---hch-hhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCC
Q 013867 185 ---KTY-GAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMN 260 (435)
Q Consensus 185 ---~ea-eal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~ 260 (435)
+|. ....++.+|... .....+.+-.++|....++++|+++...++++++|
T Consensus 461 c~LGDv~~d~s~yEkawEl---------------sn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~----------- 514 (777)
T KOG1128|consen 461 CLLGDVLHDPSLYEKAWEL---------------SNYISARAQRSLALLILSNKDFSEADKHLERSLEI----------- 514 (777)
T ss_pred HHhhhhccChHHHHHHHHH---------------hhhhhHHHHHhhccccccchhHHHHHHHHHHHhhc-----------
Confidence 111 112233343332 11111112223344445689999999999999999
Q ss_pred CcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhh
Q 013867 261 TLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHS 335 (435)
Q Consensus 261 ~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A 335 (435)
..+ ..++..++|-++...+|+..|-..|.+++.. -|+-+.+-|||+..|-..|+-.+|
T Consensus 515 npl---------q~~~wf~~G~~ALqlek~q~av~aF~rcvtL--------~Pd~~eaWnNls~ayi~~~~k~ra 572 (777)
T KOG1128|consen 515 NPL---------QLGTWFGLGCAALQLEKEQAAVKAFHRCVTL--------EPDNAEAWNNLSTAYIRLKKKKRA 572 (777)
T ss_pred Ccc---------chhHHHhccHHHHHHhhhHHHHHHHHHHhhc--------CCCchhhhhhhhHHHHHHhhhHHH
Confidence 111 3467899999999999999999999999875 467799999999999999987766
No 166
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=96.82 E-value=0.18 Score=56.07 Aligned_cols=139 Identities=19% Similarity=0.183 Sum_probs=101.8
Q ss_pred HHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHH----HHcCCHHHHHHHHHHHHH
Q 013867 227 GEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLE----AHMGNFGDAEEILTRTLT 302 (435)
Q Consensus 227 a~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly----~~qG~y~eAe~l~~rAL~ 302 (435)
..++.+-|.+++++.+-+||+.......+ .+. -.+..-+|..| ..--..++=+.+..++|+
T Consensus 401 klc~e~l~~~eegldYA~kai~~~~~~~~-----~l~----------~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslq 465 (799)
T KOG4162|consen 401 KLCIERLKLVEEGLDYAQKAISLLGGQRS-----HLK----------PRGYLFLGIAYGFQARQANLKSERDALHKKSLQ 465 (799)
T ss_pred HHHHhchhhhhhHHHHHHHHHHHhhhhhh-----hhh----------hhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHH
Confidence 34667899999999999999997533332 121 12333444444 445567778888888888
Q ss_pred HHHHh--hCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHH
Q 013867 303 KTEEL--FGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYA 380 (435)
Q Consensus 303 I~e~~--lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~ya 380 (435)
-.|+. |++..| .++.+||.-|..|++.+.| ....+++|+.-. - +.+...+-++++..+++||.
T Consensus 466 ale~av~~d~~dp---~~if~lalq~A~~R~l~sA------l~~~~eaL~l~~---~---~~~~~whLLALvlSa~kr~~ 530 (799)
T KOG4162|consen 466 ALEEAVQFDPTDP---LVIFYLALQYAEQRQLTSA------LDYAREALALNR---G---DSAKAWHLLALVLSAQKRLK 530 (799)
T ss_pred HHHHHHhcCCCCc---hHHHHHHHHHHHHHhHHHH------HHHHHHHHHhcC---C---ccHHHHHHHHHHHhhhhhhH
Confidence 88888 566666 6789999999999986655 677888887731 1 33557778999999999999
Q ss_pred HHhhHhhhhhhHHHH
Q 013867 381 EALSVQQNRKDEGER 395 (435)
Q Consensus 381 eal~~~~~r~~eae~ 395 (435)
+|+.+......|...
T Consensus 531 ~Al~vvd~al~E~~~ 545 (799)
T KOG4162|consen 531 EALDVVDAALEEFGD 545 (799)
T ss_pred HHHHHHHHHHHHhhh
Confidence 999998777777433
No 167
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.82 E-value=0.017 Score=51.80 Aligned_cols=94 Identities=14% Similarity=0.098 Sum_probs=75.6
Q ss_pred HHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhh
Q 013867 229 YLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELF 308 (435)
Q Consensus 229 ~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~l 308 (435)
.+..-|+.+.|+++|.+||.+. |+ ...++||-++.|.-||+-++|..=+.+||+. -
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~------------------P~--raSayNNRAQa~RLq~~~e~ALdDLn~AleL----a 107 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA------------------PE--RASAYNNRAQALRLQGDDEEALDDLNKALEL----A 107 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc------------------cc--chHhhccHHHHHHHcCChHHHHHHHHHHHHh----c
Confidence 3456799999999999999883 11 1246899999999999999999999999986 3
Q ss_pred CCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 309 GSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 309 G~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
|+.--.--.++.-.|.+|+.+|+-+.| ..=|++|-++-
T Consensus 108 g~~trtacqa~vQRg~lyRl~g~dd~A------R~DFe~AA~LG 145 (175)
T KOG4555|consen 108 GDQTRTACQAFVQRGLLYRLLGNDDAA------RADFEAAAQLG 145 (175)
T ss_pred CccchHHHHHHHHHHHHHHHhCchHHH------HHhHHHHHHhC
Confidence 666444456788899999999998877 66677777664
No 168
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=96.80 E-value=0.056 Score=54.23 Aligned_cols=74 Identities=18% Similarity=0.126 Sum_probs=53.4
Q ss_pred hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCH-HHHHHHH
Q 013867 219 TGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNF-GDAEEIL 297 (435)
Q Consensus 219 ~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y-~eAe~l~ 297 (435)
...+.+.+|.++-.+|+|+||+.+.++|++. . + .+ -.++.|+..+...+|+- +.+++++
T Consensus 200 t~~~lng~A~~~l~~~~~~eAe~~L~~al~~-----~---~----------~~--~d~LaNliv~~~~~gk~~~~~~~~l 259 (290)
T PF04733_consen 200 TPKLLNGLAVCHLQLGHYEEAEELLEEALEK-----D---P----------ND--PDTLANLIVCSLHLGKPTEAAERYL 259 (290)
T ss_dssp SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC---------C----------CH--HHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-----c---c----------CC--HHHHHHHHHHHHHhCCChhHHHHHH
Confidence 4566777888999999999999999998743 1 1 11 14678999999999999 5577777
Q ss_pred HHHHHHHHHhhCCCChhHHH
Q 013867 298 TRTLTKTEELFGSHHPKVGV 317 (435)
Q Consensus 298 ~rAL~I~e~~lG~~HP~va~ 317 (435)
.+.. ..-|+||-+..
T Consensus 260 ~qL~-----~~~p~h~~~~~ 274 (290)
T PF04733_consen 260 SQLK-----QSNPNHPLVKD 274 (290)
T ss_dssp HHCH-----HHTTTSHHHHH
T ss_pred HHHH-----HhCCCChHHHH
Confidence 6633 34788998754
No 169
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.78 E-value=0.18 Score=49.80 Aligned_cols=186 Identities=17% Similarity=0.120 Sum_probs=110.8
Q ss_pred CCCChHHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013867 55 GLNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKV 134 (435)
Q Consensus 55 g~~~~~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ra 134 (435)
|++-=.+ .+++-+|... .|+.+-|..++.+-..-. |..+-|... =|.++...|.|++|++.|..-
T Consensus 48 g~e~w~l-~EqV~IAAld------~~~~~lAq~C~~~L~~~f-----p~S~RV~~l---kam~lEa~~~~~~A~e~y~~l 112 (289)
T KOG3060|consen 48 GDEIWTL-YEQVFIAALD------TGRDDLAQKCINQLRDRF-----PGSKRVGKL---KAMLLEATGNYKEAIEYYESL 112 (289)
T ss_pred CchHHHH-HHHHHHHHHH------hcchHHHHHHHHHHHHhC-----CCChhHHHH---HHHHHHHhhchhhHHHHHHHH
Confidence 4444333 3444455554 246678888888755333 334444443 366899999999999999986
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHH---hcCCCccc
Q 013867 135 ENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVEL---AHGNLESG 211 (435)
Q Consensus 135 l~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~---lgg~h~~a 211 (435)
+.-.+....+ ..+-+.++..+|+ +..+|+++.+. .-.+
T Consensus 113 L~ddpt~~v~------------------------~KRKlAilka~GK-----------~l~aIk~ln~YL~~F~~D---- 153 (289)
T KOG3060|consen 113 LEDDPTDTVI------------------------RKRKLAILKAQGK-----------NLEAIKELNEYLDKFMND---- 153 (289)
T ss_pred hccCcchhHH------------------------HHHHHHHHHHcCC-----------cHHHHHHHHHHHHHhcCc----
Confidence 4432222222 2233344444442 11333333322 2222
Q ss_pred ccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCC--
Q 013867 212 LQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGN-- 289 (435)
Q Consensus 212 ~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~-- 289 (435)
..+-.-++++|-+.|+|++|.-+|+..+=|- ++++ .....||.+++.+|-
T Consensus 154 --------~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~-------P~n~-------------l~f~rlae~~Yt~gg~e 205 (289)
T KOG3060|consen 154 --------QEAWHELAEIYLSEGDFEKAAFCLEELLLIQ-------PFNP-------------LYFQRLAEVLYTQGGAE 205 (289)
T ss_pred --------HHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC-------CCcH-------------HHHHHHHHHHHHHhhHH
Confidence 2344557889999999999999999999771 1100 223478999988885
Q ss_pred -HHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHH
Q 013867 290 -FGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALM 325 (435)
Q Consensus 290 -y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~l 325 (435)
+.-|.++|.|||.|..+.+ |--.+..|.+-+.+
T Consensus 206 N~~~arkyy~~alkl~~~~~---ral~GI~lc~~~la 239 (289)
T KOG3060|consen 206 NLELARKYYERALKLNPKNL---RALFGIYLCGSALA 239 (289)
T ss_pred HHHHHHHHHHHHHHhChHhH---HHHHHHHHHHHHHH
Confidence 5558999999999976321 33344455544444
No 170
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=96.72 E-value=0.0034 Score=41.69 Aligned_cols=29 Identities=28% Similarity=0.458 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 013867 276 ATFALGQLEAHMGNFGDAEEILTRTLTKT 304 (435)
Q Consensus 276 ~l~nLa~ly~~qG~y~eAe~l~~rAL~I~ 304 (435)
+++++|.+|..+|+|++|+..|+|||+|.
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 57899999999999999999999999984
No 171
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.69 E-value=0.28 Score=49.62 Aligned_cols=205 Identities=18% Similarity=0.137 Sum_probs=120.6
Q ss_pred CCCCChHHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013867 54 NGLNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQK 133 (435)
Q Consensus 54 ~g~~~~~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~r 133 (435)
.+...|..-..+.-+|.+|.+.| +|.+|-.+|+| ++-.||..++--.--|..+++-|.|++|......
T Consensus 36 ~~Er~p~~rAgLSlLgyCYY~~Q----~f~~AA~CYeQ--------L~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~ 103 (459)
T KOG4340|consen 36 ELERSPRSRAGLSLLGYCYYRLQ----EFALAAECYEQ--------LGQLHPELEQYRLYQAQSLYKACIYADALRVAFL 103 (459)
T ss_pred HHhcCccchHHHHHHHHHHHHHH----HHHHHHHHHHH--------HHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 35666766677888999997765 89999999998 5677899999988899999999999999988776
Q ss_pred HHH---hhhhhHHHHHHHH---HHHHHH--HHhcCC-CcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHh
Q 013867 134 VEN---FKNSILGVRVAAM---EALAGL--YLQLGQ-DDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELA 204 (435)
Q Consensus 134 al~---i~e~~L~i~vaal---e~L~g~--~~~~g~-~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~l 204 (435)
..+ +.++++....+.. +.+.|. ..++-| ...|- ...+...+.-+.+ .|+ +++..+..|+. +
T Consensus 104 ~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad-~~in~gCllykeg--qyE--aAvqkFqaAlq-----v 173 (459)
T KOG4340|consen 104 LLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEAD-GQINLGCLLYKEG--QYE--AAVQKFQAALQ-----V 173 (459)
T ss_pred hcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccc-hhccchheeeccc--cHH--HHHHHHHHHHh-----h
Confidence 554 3334433222110 111110 111112 11111 1111122222222 243 33333333332 4
Q ss_pred cCCCcccccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHH---------
Q 013867 205 HGNLESGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALA--------- 275 (435)
Q Consensus 205 gg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~--------- 275 (435)
+|-. +.++.|+|....+.|+|+.|..+--..++ .|..+||.+|-+ |..+.+.+.
T Consensus 174 sGyq-----------pllAYniALaHy~~~qyasALk~iSEIie-----RG~r~HPElgIG-m~tegiDvrsvgNt~~lh 236 (459)
T KOG4340|consen 174 SGYQ-----------PLLAYNLALAHYSSRQYASALKHISEIIE-----RGIRQHPELGIG-MTTEGIDVRSVGNTLVLH 236 (459)
T ss_pred cCCC-----------chhHHHHHHHHHhhhhHHHHHHHHHHHHH-----hhhhcCCccCcc-ceeccCchhcccchHHHH
Confidence 4431 25788889889999999999988765443 344567776632 111111111
Q ss_pred ------HHHHHHHHHHHcCCHHHHHHHH
Q 013867 276 ------ATFALGQLEAHMGNFGDAEEIL 297 (435)
Q Consensus 276 ------~l~nLa~ly~~qG~y~eAe~l~ 297 (435)
++|--+.++...|+|+-|.+-+
T Consensus 237 ~Sal~eAfNLKaAIeyq~~n~eAA~eaL 264 (459)
T KOG4340|consen 237 QSALVEAFNLKAAIEYQLRNYEAAQEAL 264 (459)
T ss_pred HHHHHHHhhhhhhhhhhcccHHHHHHHh
Confidence 2222366788899998887644
No 172
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=96.66 E-value=0.03 Score=61.84 Aligned_cols=190 Identities=17% Similarity=0.128 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh---hhHHHHHHHHH-HHHHHHHhcCCCcchHHHHHHHHHHHHhcCCC
Q 013867 107 RGISLLAMSTLLYESGNYVEAIEKLQKVENFKN---SILGVRVAAME-ALAGLYLQLGQDDTSSVVADKCLQLCEKHKPE 182 (435)
Q Consensus 107 ~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e---~~L~i~vaale-~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~ 182 (435)
|.+.--.+|.-+..+|+||.|+-+|-.+..+.. ..+|.+ .|. .+..+.--|.+. .++-++-..++-+.+.+
T Consensus 705 vv~lee~wg~hl~~~~q~daainhfiea~~~~kaieaai~ak--ew~kai~ildniqdqk-~~s~yy~~iadhyan~~-- 779 (1636)
T KOG3616|consen 705 VVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKAIEAAIGAK--EWKKAISILDNIQDQK-TASGYYGEIADHYANKG-- 779 (1636)
T ss_pred HhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhhh--hhhhhHhHHHHhhhhc-cccccchHHHHHhccch--
Confidence 555566788889999999999999976644322 122211 111 111111111111 12222222333332222
Q ss_pred chhchhhHHHHHHHHHH--HHHHhcCCCcccccccccchhHHH--HH---HHHHHHHhhchHHHHHHH------HHHHHH
Q 013867 183 NYKTYGAVNSRANAVKG--LVELAHGNLESGLQEEEGCTGSAA--LS---YGEYLHATRNFLLAKKFY------QKVIEV 249 (435)
Q Consensus 183 ~~~eaeal~~~a~Ai~~--~~~~lgg~h~~a~~~~~~~~~~~a--~~---la~~~~~~G~y~eAe~ly------~rAL~I 249 (435)
.|+-++.++..+--.+. ..+.-.|++.+|..+.+.|++.-+ .. -++=+..+|+|.||++|| .+|+.+
T Consensus 780 dfe~ae~lf~e~~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqm 859 (1636)
T KOG3616|consen 780 DFEIAEELFTEADLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQM 859 (1636)
T ss_pred hHHHHHHHHHhcchhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHH
Confidence 24445554433211111 111122344333333333332221 11 245567899999999999 477777
Q ss_pred HHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 013867 250 LAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTK 303 (435)
Q Consensus 250 ~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I 303 (435)
+.+.....+.--+- ..++++|+. .+-..+|.-|...|+..+||+.|.+|-.-
T Consensus 860 ydk~~~~ddmirlv-~k~h~d~l~-dt~~~f~~e~e~~g~lkaae~~flea~d~ 911 (1636)
T KOG3616|consen 860 YDKHGLDDDMIRLV-EKHHGDHLH-DTHKHFAKELEAEGDLKAAEEHFLEAGDF 911 (1636)
T ss_pred HHhhCcchHHHHHH-HHhChhhhh-HHHHHHHHHHHhccChhHHHHHHHhhhhH
Confidence 65432211000000 112355443 34457889999999999999999887554
No 173
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.59 E-value=0.0045 Score=40.74 Aligned_cols=32 Identities=28% Similarity=0.417 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 013867 108 GISLLAMSTLLYESGNYVEAIEKLQKVENFKN 139 (435)
Q Consensus 108 A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e 139 (435)
|..+..||.+|..+|+|++|++.|++++.+.+
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 46789999999999999999999999977643
No 174
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=96.58 E-value=0.22 Score=56.92 Aligned_cols=221 Identities=14% Similarity=0.101 Sum_probs=134.3
Q ss_pred HHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCC
Q 013867 83 SQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQD 162 (435)
Q Consensus 83 ~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~g~~ 162 (435)
..|...|-+++.+. |..|..+..||..|++.-+...|-..|.+|.++... .+.+.......|-+....
T Consensus 475 ~~al~ali~alrld--------~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat----daeaaaa~adtyae~~~w 542 (1238)
T KOG1127|consen 475 ALALHALIRALRLD--------VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT----DAEAAAASADTYAEESTW 542 (1238)
T ss_pred HHHHHHHHHHHhcc--------cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch----hhhhHHHHHHHhhccccH
Confidence 35555566665443 678899999999999999999999999999775422 233344444555444433
Q ss_pred cchHHHHHHHHHHHHhcCCCchhch-hhHHHHHHHHHHHHHHhcCCCccccc------ccccchhHHHHHHHHHHHHhhc
Q 013867 163 DTSSVVADKCLQLCEKHKPENYKTY-GAVNSRANAVKGLVELAHGNLESGLQ------EEEGCTGSAALSYGEYLHATRN 235 (435)
Q Consensus 163 ~~A~~~~~~~~~l~~~~~~~~~~ea-eal~~~a~Ai~~~~~~lgg~h~~a~~------~~~~~~~~~a~~la~~~~~~G~ 235 (435)
+.|+.. |+...++... ... +.+ .. ++..+.--++|..+-. -.+|...+...++|+.|.+.|+
T Consensus 543 e~a~~I---~l~~~qka~a---~~~k~nW---~~--rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGr 611 (1238)
T KOG1127|consen 543 EEAFEI---CLRAAQKAPA---FACKENW---VQ--RGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGR 611 (1238)
T ss_pred HHHHHH---HHHHhhhchH---HHHHhhh---hh--ccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCc
Confidence 443332 2333222110 000 000 00 1111111111111000 0135566788889999999999
Q ss_pred hHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhH
Q 013867 236 FLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKV 315 (435)
Q Consensus 236 y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~v 315 (435)
|.-|...|.||.... |++ ..+-.--+...+.+|+|.+|...++..+..++.-.- ---..
T Consensus 612 y~~AlKvF~kAs~Lr------------------P~s--~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~-~q~gL 670 (1238)
T KOG1127|consen 612 YSHALKVFTKASLLR------------------PLS--KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERT-GQNGL 670 (1238)
T ss_pred eehHHHhhhhhHhcC------------------cHh--HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH-hhhhH
Confidence 999999999998771 221 134567888999999999999999888776654321 11235
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhc
Q 013867 316 GVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLK 353 (435)
Q Consensus 316 a~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k 353 (435)
+.++..++..+..+|=+-+| -..++++++++.
T Consensus 671 aE~~ir~akd~~~~gf~~ka------vd~~eksie~f~ 702 (1238)
T KOG1127|consen 671 AESVIRDAKDSAITGFQKKA------VDFFEKSIESFI 702 (1238)
T ss_pred HHHHHHHHHHHHHHHHhhhh------hHHHHHHHHHHH
Confidence 66677777777777765555 566777777664
No 175
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=96.56 E-value=0.13 Score=45.38 Aligned_cols=121 Identities=21% Similarity=0.190 Sum_probs=75.2
Q ss_pred hHHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHhhhhhH--------HHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHH
Q 013867 106 WRGISLLAMSTL--LYESGNYVEAIEKLQKVENFKNSIL--------GVRVAAMEALAGLYLQLGQDDTSSVVADKCLQL 175 (435)
Q Consensus 106 ~~A~~l~nLa~l--y~~qGky~eA~~l~~ral~i~e~~L--------~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l 175 (435)
.|+.+|..|+.- ...-|-|++|..-+++|+++..++. |++.-.--.|.+....+|.+++++..++..+..
T Consensus 5 eVa~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~Y 84 (144)
T PF12968_consen 5 EVAMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRY 84 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 478888888776 4567999999999999999876542 222111112334444557777766666666555
Q ss_pred HHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcc
Q 013867 176 CEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKD 255 (435)
Q Consensus 176 ~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~ 255 (435)
....+..+.++- .....++.+-|..+...|+.+||...|+.+-+++.++||
T Consensus 85 FNRRGEL~qdeG-----------------------------klWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaERKG 135 (144)
T PF12968_consen 85 FNRRGELHQDEG-----------------------------KLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAERKG 135 (144)
T ss_dssp HHHH--TTSTHH-----------------------------HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH--S
T ss_pred Hhhccccccccc-----------------------------hhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcC
Confidence 544332111100 011234566677788999999999999999999998887
No 176
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.54 E-value=0.12 Score=51.25 Aligned_cols=70 Identities=20% Similarity=0.169 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcC
Q 013867 275 AATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKA 354 (435)
Q Consensus 275 ~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~ 354 (435)
..++.++.+...||+|+||+.+++.||.. .|.+..+|.|+=.+-..+|+-.++ -.|=|.-.+.
T Consensus 208 ~llnG~Av~~l~~~~~eeAe~lL~eaL~k--------d~~dpetL~Nliv~a~~~Gkd~~~---------~~r~l~QLk~ 270 (299)
T KOG3081|consen 208 LLLNGQAVCHLQLGRYEEAESLLEEALDK--------DAKDPETLANLIVLALHLGKDAEV---------TERNLSQLKL 270 (299)
T ss_pred HHHccHHHHHHHhcCHHHHHHHHHHHHhc--------cCCCHHHHHHHHHHHHHhCCChHH---------HHHHHHHHHh
Confidence 46789999999999999999999999974 455577888888888889987654 4555555666
Q ss_pred CCCCCCc
Q 013867 355 PPLESEG 361 (435)
Q Consensus 355 ~~~~hp~ 361 (435)
..|+||-
T Consensus 271 ~~p~h~~ 277 (299)
T KOG3081|consen 271 SHPEHPF 277 (299)
T ss_pred cCCcchH
Confidence 6788874
No 177
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.48 E-value=0.21 Score=49.67 Aligned_cols=114 Identities=21% Similarity=0.144 Sum_probs=85.3
Q ss_pred HHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 013867 227 GEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEE 306 (435)
Q Consensus 227 a~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~ 306 (435)
|.+|..-|+|++|+..-.+...+ .+.++++ +++.++-|+|-|+...++..+|-+.
T Consensus 115 a~i~~~~~~~deAl~~~~~~~~l-----------------------E~~Al~V--qI~lk~~r~d~A~~~lk~mq~ided 169 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGENL-----------------------EAAALNV--QILLKMHRFDLAEKELKKMQQIDED 169 (299)
T ss_pred hHHhhcCCChHHHHHHHhccchH-----------------------HHHHHHH--HHHHHHHHHHHHHHHHHHHHccchH
Confidence 56788999999998776663332 1233443 3567889999999999999999775
Q ss_pred hhCCCChhHHHHHHHHHHHHHH--hhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHHHhh
Q 013867 307 LFGSHHPKVGVVLTCLALMFRN--KAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALS 384 (435)
Q Consensus 307 ~lG~~HP~va~~L~nLA~ly~~--qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yaeal~ 384 (435)
.+|+-||..|-. +|. +. ++-|.-|++.+...-|.|...++..++++..+|||+||..
T Consensus 170 ----------~tLtQLA~awv~la~gg----------ek-~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~ 228 (299)
T KOG3081|consen 170 ----------ATLTQLAQAWVKLATGG----------EK-IQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAES 228 (299)
T ss_pred ----------HHHHHHHHHHHHHhccc----------hh-hhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHH
Confidence 366777776654 232 23 6777778876666567778899999999999999999987
Q ss_pred Hh
Q 013867 385 VQ 386 (435)
Q Consensus 385 ~~ 386 (435)
+-
T Consensus 229 lL 230 (299)
T KOG3081|consen 229 LL 230 (299)
T ss_pred HH
Confidence 65
No 178
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=96.46 E-value=0.046 Score=57.88 Aligned_cols=91 Identities=16% Similarity=0.054 Sum_probs=71.4
Q ss_pred cchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 013867 217 GCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEI 296 (435)
Q Consensus 217 ~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l 296 (435)
|+......-.+.++...+++++|.+.+++++... ++. . .-..|+|++|...|+++||+..
T Consensus 337 P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~------P~~---~-----------~l~~~~a~all~~g~~~eai~~ 396 (484)
T COG4783 337 PDNPYYLELAGDILLEANKAKEAIERLKKALALD------PNS---P-----------LLQLNLAQALLKGGKPQEAIRI 396 (484)
T ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC------CCc---c-----------HHHHHHHHHHHhcCChHHHHHH
Confidence 4433444445678999999999999999999871 111 1 1236999999999999999999
Q ss_pred HHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhh
Q 013867 297 LTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHS 335 (435)
Q Consensus 297 ~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A 335 (435)
+.+.+. +.|+-...+.-||..|..+|+..++
T Consensus 397 L~~~~~--------~~p~dp~~w~~LAqay~~~g~~~~a 427 (484)
T COG4783 397 LNRYLF--------NDPEDPNGWDLLAQAYAELGNRAEA 427 (484)
T ss_pred HHHHhh--------cCCCCchHHHHHHHHHHHhCchHHH
Confidence 988764 6778888899999999999998776
No 179
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.46 E-value=0.48 Score=40.50 Aligned_cols=222 Identities=22% Similarity=0.207 Sum_probs=135.9
Q ss_pred hcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhc
Q 013867 80 ESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQL 159 (435)
Q Consensus 80 G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~ 159 (435)
+.+..+...+...+...... ........++..+...|++.+++..+...... ..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~----------------- 90 (291)
T COG0457 37 GELAEALELLEEALELLPNS------DLAGLLLLLALALLKLGRLEEALELLEKALEL---EL----------------- 90 (291)
T ss_pred hhHHHHHHHHHHHHhcCccc------cchHHHHHHHHHHHHcccHHHHHHHHHHHHhh---hh-----------------
Confidence 46778888888887665432 46778889999999999999999988877432 00
Q ss_pred CCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHH-HHHHhhchHH
Q 013867 160 GQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGE-YLHATRNFLL 238 (435)
Q Consensus 160 g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~-~~~~~G~y~e 238 (435)
.+. .. ............ +.....++........-... + ......... ++...|++++
T Consensus 91 ~~~-~~-~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~-------~--~~~~~~~~~~~~~~~~~~~~ 148 (291)
T COG0457 91 LPN-LA-EALLNLGLLLEA-----------LGKYEEALELLEKALALDPD-------P--DLAEALLALGALYELGDYEE 148 (291)
T ss_pred ccc-hH-HHHHHHHHHHHH-----------HhhHHHHHHHHHHHHcCCCC-------c--chHHHHHHHHHHHHcCCHHH
Confidence 000 00 000011111111 00111222221111111100 0 011111223 6889999999
Q ss_pred HHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHH
Q 013867 239 AKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVV 318 (435)
Q Consensus 239 Ae~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~ 318 (435)
|...|++++.+. . . ... .......++..+...|++++|...+.+++.+.... ....
T Consensus 149 a~~~~~~~~~~~---~----~-~~~---------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~ 204 (291)
T COG0457 149 ALELYEKALELD---P----E-LNE---------LAEALLALGALLEALGRYEEALELLEKALKLNPDD-------DAEA 204 (291)
T ss_pred HHHHHHHHHhcC---C----C-ccc---------hHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCccc-------chHH
Confidence 999999996531 0 0 000 12345566777999999999999999999987765 6778
Q ss_pred HHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHHHhhHh
Q 013867 319 LTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQ 386 (435)
Q Consensus 319 L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~ 386 (435)
+.+++..|..++++++| ...+.+++..... ....+...+..+...|.+.++....
T Consensus 205 ~~~~~~~~~~~~~~~~a------~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (291)
T COG0457 205 LLNLGLLYLKLGKYEEA------LEYYEKALELDPD-------NAEALYNLALLLLELGRYEEALEAL 259 (291)
T ss_pred HHHhhHHHHHcccHHHH------HHHHHHHHhhCcc-------cHHHHhhHHHHHHHcCCHHHHHHHH
Confidence 99999999999987665 7888888887743 2334445556665666677766544
No 180
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.39 E-value=0.039 Score=52.85 Aligned_cols=95 Identities=16% Similarity=0.105 Sum_probs=76.7
Q ss_pred HHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhh
Q 013867 229 YLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELF 308 (435)
Q Consensus 229 ~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~l 308 (435)
=+...|.|++|..-|++||++.- . .++++..-.+.|-|....++++++.|..-..+|+++
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp---------~------~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel----- 163 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCP---------S------TSTEERSILYSNRAAALIKLRKWESAIEDCSKAIEL----- 163 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCc---------c------ccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc-----
Confidence 34678999999999999999931 1 134444445679999999999999999999999987
Q ss_pred CCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 309 GSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 309 G~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
.|..-.+|...|.+|....+|++| ..=|++.+++-
T Consensus 164 ---~pty~kAl~RRAeayek~ek~eea------leDyKki~E~d 198 (271)
T KOG4234|consen 164 ---NPTYEKALERRAEAYEKMEKYEEA------LEDYKKILESD 198 (271)
T ss_pred ---CchhHHHHHHHHHHHHhhhhHHHH------HHHHHHHHHhC
Confidence 466777788899999999888776 67788877765
No 181
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.33 E-value=0.17 Score=49.53 Aligned_cols=153 Identities=20% Similarity=0.211 Sum_probs=83.0
Q ss_pred HHHHcCCHHHHHHHHHHHHHhhhhhHHHHHH--HHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHH
Q 013867 117 LLYESGNYVEAIEKLQKVENFKNSILGVRVA--AMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRA 194 (435)
Q Consensus 117 ly~~qGky~eA~~l~~ral~i~e~~L~i~va--ale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a 194 (435)
++.-.++|+||.++|.|+-.+..=.=.-..+ +.-..+-+++..|....+-..+-...+-+.+.. . .++.....
T Consensus 23 lfgg~~k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk~~---~--~eAv~cL~ 97 (288)
T KOG1586|consen 23 LFGGSNKYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKKVD---P--EEAVNCLE 97 (288)
T ss_pred ccCCCcchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhccC---h--HHHHHHHH
Confidence 3444569999999999986654211000000 222444556666643322222222233333322 2 26667777
Q ss_pred HHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHh-hchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHH
Q 013867 195 NAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHAT-RNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVA 273 (435)
Q Consensus 195 ~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~-G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~ 273 (435)
++|.+. +--|++.-|. +--.++|++|.+- -++++|+..|++|-+-+ +++ . .. +
T Consensus 98 ~aieIy--t~~Grf~~aA--------k~~~~iaEiyEsdl~d~ekaI~~YE~Aae~y---k~e--e-s~----------s 151 (288)
T KOG1586|consen 98 KAIEIY--TDMGRFTMAA--------KHHIEIAEIYESDLQDFEKAIAHYEQAAEYY---KGE--E-SV----------S 151 (288)
T ss_pred HHHHHH--HhhhHHHHHH--------hhhhhHHHHHhhhHHHHHHHHHHHHHHHHHH---cch--h-hh----------h
Confidence 888763 3445533211 1123578888765 89999999999999995 331 1 11 2
Q ss_pred HH--HHHHHHHHHHHcCCHHHHHHHHHHH
Q 013867 274 LA--ATFALGQLEAHMGNFGDAEEILTRT 300 (435)
Q Consensus 274 l~--~l~nLa~ly~~qG~y~eAe~l~~rA 300 (435)
.+ ++...|+.-...|+|.+|...|++.
T Consensus 152 sANKC~lKvA~yaa~leqY~~Ai~iyeqv 180 (288)
T KOG1586|consen 152 SANKCLLKVAQYAAQLEQYSKAIDIYEQV 180 (288)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23 3334466556667777666666654
No 182
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.32 E-value=0.4 Score=52.69 Aligned_cols=102 Identities=17% Similarity=0.215 Sum_probs=64.1
Q ss_pred cchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHH-HHHHHHHHcCCHHHHHH
Q 013867 217 GCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATF-ALGQLEAHMGNFGDAEE 295 (435)
Q Consensus 217 ~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~-nLa~ly~~qG~y~eAe~ 295 (435)
-+++.++.|||.++....-|++|-+.|+|.+.++. -++. ..+.... --..--..--+.+.|..
T Consensus 508 iaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk------~p~v----------~diW~tYLtkfi~rygg~klEraRd 571 (835)
T KOG2047|consen 508 IATPQIIINYAMFLEEHKYFEESFKAYERGISLFK------WPNV----------YDIWNTYLTKFIKRYGGTKLERARD 571 (835)
T ss_pred cCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCC------CccH----------HHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 35678899999999999999999999999998841 1111 1122211 11111122346788999
Q ss_pred HHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhc
Q 013867 296 ILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLK 353 (435)
Q Consensus 296 l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k 353 (435)
||+|||... - |.-+.++.- +|. ++|+= -+|-++|+.|++
T Consensus 572 LFEqaL~~C----p---p~~aKtiyL---lYA---~lEEe------~GLar~amsiye 610 (835)
T KOG2047|consen 572 LFEQALDGC----P---PEHAKTIYL---LYA---KLEEE------HGLARHAMSIYE 610 (835)
T ss_pred HHHHHHhcC----C---HHHHHHHHH---HHH---HHHHH------hhHHHHHHHHHH
Confidence 999999832 2 555555442 233 33332 588888888884
No 183
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=96.31 E-value=0.45 Score=51.64 Aligned_cols=255 Identities=20% Similarity=0.183 Sum_probs=142.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhh
Q 013867 110 SLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGA 189 (435)
Q Consensus 110 ~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaea 189 (435)
.+.-...++.++|+|++|+++++...... --+++.++..+.+++.+|+...|+..+..++.. .+.++.=+.-
T Consensus 6 ~lLY~~~il~e~g~~~~AL~~L~~~~~~I----~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r----NPdn~~Yy~~ 77 (517)
T PF12569_consen 6 LLLYKNSILEEAGDYEEALEHLEKNEKQI----LDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR----NPDNYDYYRG 77 (517)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhhhhhC----CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----CCCcHHHHHH
Confidence 45567789999999999999997753321 113445777888899999998887665544333 2222210111
Q ss_pred HHHH-----------HHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCC
Q 013867 190 VNSR-----------ANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSD 258 (435)
Q Consensus 190 l~~~-----------a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~ 258 (435)
+... ...+..+...+...+|.+. +.-.+..-+..-.+|.+...-|-+-. + .+|
T Consensus 78 L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~---------~~~rl~L~~~~g~~F~~~~~~yl~~~-l---~Kg--- 141 (517)
T PF12569_consen 78 LEEALGLQLQLSDEDVEKLLELYDELAEKYPRSD---------APRRLPLDFLEGDEFKERLDEYLRPQ-L---RKG--- 141 (517)
T ss_pred HHHHHhhhcccccccHHHHHHHHHHHHHhCcccc---------chhHhhcccCCHHHHHHHHHHHHHHH-H---hcC---
Confidence 1000 0111122233333333211 00001000011123444333333322 1 233
Q ss_pred CCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--hC------CCChhH-HHHHHHHHHHHHHh
Q 013867 259 MNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEEL--FG------SHHPKV-GVVLTCLALMFRNK 329 (435)
Q Consensus 259 ~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~--lG------~~HP~v-a~~L~nLA~ly~~q 329 (435)
. | ....||-.+|.+..+.+--+.+.+.-+.-.+.. +. .+-|.+ .-++.-||..|...
T Consensus 142 --v-------P-----slF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~ 207 (517)
T PF12569_consen 142 --V-------P-----SLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYL 207 (517)
T ss_pred --C-------c-----hHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHh
Confidence 1 1 234688889997777655555555544433221 21 244554 57789999999999
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHHHhhHh--hhhhhHHHHHHH--HHHHHhc
Q 013867 330 AMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQ--QNRKDEGERMKR--WAEAAWR 405 (435)
Q Consensus 330 G~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~--~~r~~eae~~~~--~a~~~~~ 405 (435)
|++++| ..+..+||+.- |....-....|-++...|++.+|.... .+..+-+.+-.+ .+.-+-+
T Consensus 208 g~~~~A------l~~Id~aI~ht-------Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LR 274 (517)
T PF12569_consen 208 GDYEKA------LEYIDKAIEHT-------PTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLR 274 (517)
T ss_pred CCHHHH------HHHHHHHHhcC-------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHH
Confidence 998776 67777777653 332333446788899999999998875 222333555443 5566668
Q ss_pred ccchhHHHHh
Q 013867 406 NRRVSLAEAL 415 (435)
Q Consensus 406 ~~r~~l~~~l 415 (435)
+++...|+.+
T Consensus 275 a~~~e~A~~~ 284 (517)
T PF12569_consen 275 AGRIEEAEKT 284 (517)
T ss_pred CCCHHHHHHH
Confidence 8887777654
No 184
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.29 E-value=0.048 Score=53.95 Aligned_cols=102 Identities=16% Similarity=0.185 Sum_probs=80.3
Q ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013867 223 ALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLT 302 (435)
Q Consensus 223 a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~ 302 (435)
..+.|.=+...|+|++|+.-|+.=+.-+ +.... . -.+.+=||+++..||+|++|...|.++..
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~Y------P~s~~-~----------~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k 206 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKY------PNSTY-T----------PNAYYWLGESLYAQGDYEDAAYIFARVVK 206 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC------CCCcc-c----------chhHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 3444544567899999999998877552 22222 1 14678999999999999999999999988
Q ss_pred HHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 303 KTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 303 I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
-+ |+||..-.+|.-||......|+.++| -..|++.+.-+
T Consensus 207 ~~-----P~s~KApdallKlg~~~~~l~~~d~A------~atl~qv~k~Y 245 (262)
T COG1729 207 DY-----PKSPKAPDALLKLGVSLGRLGNTDEA------CATLQQVIKRY 245 (262)
T ss_pred hC-----CCCCCChHHHHHHHHHHHHhcCHHHH------HHHHHHHHHHC
Confidence 43 78999999999999999999998877 56677776655
No 185
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.29 E-value=0.18 Score=48.04 Aligned_cols=97 Identities=20% Similarity=0.185 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHH--HHHHHHHHHcCCHHHHHHHHHH
Q 013867 222 AALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAAT--FALGQLEAHMGNFGDAEEILTR 299 (435)
Q Consensus 222 ~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l--~nLa~ly~~qG~y~eAe~l~~r 299 (435)
+++.+|..+...|+|++|+.-.+.+|.- .+. + .+.++ .+||.|...+|+||+|..++..
T Consensus 91 aaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~D--------------e--~lk~l~~lRLArvq~q~~k~D~AL~~L~t 151 (207)
T COG2976 91 AALELAKAEVEANNLDKAEAQLKQALAQ---TKD--------------E--NLKALAALRLARVQLQQKKADAALKTLDT 151 (207)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHcc---chh--------------H--HHHHHHHHHHHHHHHHhhhHHHHHHHHhc
Confidence 3466788889999999999999999865 221 0 22333 4799999999999999887764
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 300 TLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 300 AL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
- .+|--++..-.-.|.++-.+|+-++| ..-|++|+++.
T Consensus 152 ~---------~~~~w~~~~~elrGDill~kg~k~~A------r~ay~kAl~~~ 189 (207)
T COG2976 152 I---------KEESWAAIVAELRGDILLAKGDKQEA------RAAYEKALESD 189 (207)
T ss_pred c---------ccccHHHHHHHHhhhHHHHcCchHHH------HHHHHHHHHcc
Confidence 3 23444666677789999999998776 78899999987
No 186
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.25 E-value=0.042 Score=52.80 Aligned_cols=112 Identities=20% Similarity=0.202 Sum_probs=81.6
Q ss_pred cCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhc-CC-CCC----CC
Q 013867 287 MGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLK-AP-PLE----SE 360 (435)
Q Consensus 287 qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k-~~-~~~----hp 360 (435)
--.+++|...|.-||-.+ +..+.+|-..|...-.+|.+|+.+|+.++. ..++++|++.++ +. ..+ .-
T Consensus 90 ~Rt~~~ai~~YkLAll~~-~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E------~~fl~~Al~~y~~a~~~e~~~~~~~ 162 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCA-QIKKEKPSKKAGLCLRLAWLYRDLGDEENE------KRFLRKALEFYEEAYENEDFPIEGM 162 (214)
T ss_pred CCCHHHHHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHhhccCCHHHH------HHHHHHHHHHHHHHHHhCcCCCCCc
Confidence 356889999999999884 567788889999999999999999996554 566777777773 32 111 22
Q ss_pred chhhhhccHHHHHHHhcCHHHHhhHhhhhhhH-----HHHHHHHHHHHhc
Q 013867 361 GVETKVDRTDIVALARGGYAEALSVQQNRKDE-----GERMKRWAEAAWR 405 (435)
Q Consensus 361 ~~a~~l~nla~~~~a~G~yaeal~~~~~r~~e-----ae~~~~~a~~~~~ 405 (435)
+-.+.+.-+|.++..-|+|+||...+.+-..- -.++.+.|...|-
T Consensus 163 ~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~~~~l~~~AR~~w~ 212 (214)
T PF09986_consen 163 DEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASKEPKLKDMARDQWQ 212 (214)
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHH
Confidence 33556667899999999999998876332222 2367778888773
No 187
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=96.24 E-value=0.031 Score=46.40 Aligned_cols=83 Identities=13% Similarity=0.224 Sum_probs=62.4
Q ss_pred HhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCC
Q 013867 232 ATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSH 311 (435)
Q Consensus 232 ~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~ 311 (435)
..|+|.+|.+...+.++....... ... ......++.|+|.++...|++++|...+++|+.|.++. .|
T Consensus 10 ~~~dy~~A~d~L~~~fD~~~~~~~---~~~--------~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~--~D 76 (94)
T PF12862_consen 10 RSGDYSEALDALHRYFDYAKQSNN---SSS--------NSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN--GD 76 (94)
T ss_pred HcCCHHHHHHHHHHHHHHHhhccc---chh--------hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH--CC
Confidence 579999999999999999543221 100 00122367899999999999999999999999999875 45
Q ss_pred ChhHHHHHHHHHHHHH
Q 013867 312 HPKVGVVLTCLALMFR 327 (435)
Q Consensus 312 HP~va~~L~nLA~ly~ 327 (435)
+.-++.++..++.+..
T Consensus 77 ~~~l~~al~~~~~l~~ 92 (94)
T PF12862_consen 77 RRCLAYALSWLANLLK 92 (94)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 6667777777776654
No 188
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=96.24 E-value=2.4 Score=47.00 Aligned_cols=160 Identities=18% Similarity=0.168 Sum_probs=100.0
Q ss_pred hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013867 219 TGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILT 298 (435)
Q Consensus 219 ~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~ 298 (435)
+..+..-.+.+.+.+|+.++|..|.+++|.++- ++- --..-||++|..+++.+.|.+-|.
T Consensus 650 TeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp---------~f~-----------Kl~lmlGQi~e~~~~ie~aR~aY~ 709 (913)
T KOG0495|consen 650 TERVWMKSANLERYLDNVEEALRLLEEALKSFP---------DFH-----------KLWLMLGQIEEQMENIEMAREAYL 709 (913)
T ss_pred cchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCC---------chH-----------HHHHHHhHHHHHHHHHHHHHHHHH
Confidence 345666677888899999999999999998841 110 123578999999999999999997
Q ss_pred HHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHH--HHHh
Q 013867 299 RTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIV--ALAR 376 (435)
Q Consensus 299 rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~--~~a~ 376 (435)
+-+. .-|..-...-.|+.+=..+|..-+| ...+.|+.- -.|+.+. -+++.+ -+..
T Consensus 710 ~G~k--------~cP~~ipLWllLakleEk~~~~~rA------R~ildrarl----kNPk~~~-----lwle~Ir~ElR~ 766 (913)
T KOG0495|consen 710 QGTK--------KCPNSIPLWLLLAKLEEKDGQLVRA------RSILDRARL----KNPKNAL-----LWLESIRMELRA 766 (913)
T ss_pred hccc--------cCCCCchHHHHHHHHHHHhcchhhH------HHHHHHHHh----cCCCcch-----hHHHHHHHHHHc
Confidence 7553 3466666666677777777653222 333443321 1333332 123322 2345
Q ss_pred cCHHHHhhHhhhhhhHH-HHHHHHHHHHh----cccchhHHHHhcccCCC
Q 013867 377 GGYAEALSVQQNRKDEG-ERMKRWAEAAW----RNRRVSLAEALNFSEPS 421 (435)
Q Consensus 377 G~yaeal~~~~~r~~ea-e~~~~~a~~~~----~~~r~~l~~~l~~~~~~ 421 (435)
|..++|..+..+...|- ..=.-|++++| .|++..--+||.+.++.
T Consensus 767 gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~d 816 (913)
T KOG0495|consen 767 GNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHD 816 (913)
T ss_pred CCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCC
Confidence 66666655543322221 11113999999 47777788999988887
No 189
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.19 E-value=0.0045 Score=42.00 Aligned_cols=21 Identities=24% Similarity=0.289 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHH
Q 013867 275 AATFALGQLEAHMGNFGDAEE 295 (435)
Q Consensus 275 ~~l~nLa~ly~~qG~y~eAe~ 295 (435)
.+++|||.+|..+|++++|++
T Consensus 14 ~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 14 EAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred HHHHHHHHHHHHCcCHHhhcC
Confidence 578999999999999999973
No 190
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.17 E-value=0.012 Score=38.72 Aligned_cols=29 Identities=31% Similarity=0.461 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 013867 276 ATFALGQLEAHMGNFGDAEEILTRTLTKT 304 (435)
Q Consensus 276 ~l~nLa~ly~~qG~y~eAe~l~~rAL~I~ 304 (435)
.+..+|.+|..+|+|++|...|++++.+.
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 46799999999999999999999999874
No 191
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.14 E-value=0.012 Score=41.76 Aligned_cols=37 Identities=27% Similarity=0.357 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHH
Q 013867 276 ATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGV 317 (435)
Q Consensus 276 ~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~ 317 (435)
.+..||.+|..+|++++|+.+|+++++. .|++|.+-.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~-----~P~~~~a~~ 39 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL-----DPDDPEAWR 39 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CcCCHHHHH
Confidence 4678999999999999999999999984 456655433
No 192
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.03 E-value=0.053 Score=53.65 Aligned_cols=101 Identities=12% Similarity=0.066 Sum_probs=80.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCC
Q 013867 277 TFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPP 356 (435)
Q Consensus 277 l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~ 356 (435)
++|.|.=+...|+|++|+.-|..-+.. .|+.+.++.++..||.+|..||+|++| ...|.++..-+
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~-----YP~s~~~~nA~yWLGe~~y~qg~y~~A------a~~f~~~~k~~---- 208 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKK-----YPNSTYTPNAYYWLGESLYAQGDYEDA------AYIFARVVKDY---- 208 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCcccchhHHHHHHHHHhcccchHH------HHHHHHHHHhC----
Confidence 677888888899999999999988875 589999999999999999999998876 77788777644
Q ss_pred CCCCchhhhhccHHHHHHHhcCHHHHhhHhhhhhhH
Q 013867 357 LESEGVETKVDRTDIVALARGGYAEALSVQQNRKDE 392 (435)
Q Consensus 357 ~~hp~~a~~l~nla~~~~a~G~yaeal~~~~~r~~e 392 (435)
|+||-...+|-=++.+....|+-++|+.....-.++
T Consensus 209 P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 209 PKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred CCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 455544446666788888888888888776444433
No 193
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.02 E-value=0.0045 Score=42.03 Aligned_cols=33 Identities=18% Similarity=0.332 Sum_probs=28.2
Q ss_pred HHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHH
Q 013867 89 LEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIE 129 (435)
Q Consensus 89 ~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~ 129 (435)
|++++++ +|+-+.++++||.+|..+|++++|++
T Consensus 2 y~kAie~--------~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIEL--------NPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHH--------CCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 6777744 47889999999999999999999973
No 194
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.00 E-value=0.089 Score=50.59 Aligned_cols=102 Identities=17% Similarity=0.181 Sum_probs=80.3
Q ss_pred hhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCC
Q 013867 233 TRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAA-TFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSH 311 (435)
Q Consensus 233 ~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~-l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~ 311 (435)
.-.+++|..-|.-||-..+-... ++ ...+. ...+|=+|..+|+-++...++++|+..+++.+-.+
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~---~~-----------s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e 155 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKE---KP-----------SKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENE 155 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCC---CH-----------HHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 45789999999999988643221 11 12343 35899999999999999999999999999998766
Q ss_pred Ch-----hHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcC
Q 013867 312 HP-----KVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKA 354 (435)
Q Consensus 312 HP-----~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~ 354 (435)
.. +-...+.-+|.++++-|++++| ...|.|.+.-.+.
T Consensus 156 ~~~~~~~~~~~l~YLigeL~rrlg~~~eA------~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 156 DFPIEGMDEATLLYLIGELNRRLGNYDEA------KRWFSRVIGSKKA 197 (214)
T ss_pred cCCCCCchHHHHHHHHHHHHHHhCCHHHH------HHHHHHHHcCCCC
Confidence 55 4478899999999999998877 7888888776643
No 195
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=95.94 E-value=0.017 Score=38.06 Aligned_cols=32 Identities=19% Similarity=0.351 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 013867 108 GISLLAMSTLLYESGNYVEAIEKLQKVENFKN 139 (435)
Q Consensus 108 A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e 139 (435)
|.++..+|.+|.++|++++|++.|++++++.+
T Consensus 1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 1 AEAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp -HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 46789999999999999999999999987654
No 196
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=95.83 E-value=0.64 Score=51.09 Aligned_cols=223 Identities=19% Similarity=0.148 Sum_probs=133.7
Q ss_pred hhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Q 013867 79 DESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQ 158 (435)
Q Consensus 79 ~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~ 158 (435)
.+.|...+...++.|+ .+|.-+.|+--.|-.+...|+-++|-++-+.++..
T Consensus 20 ~kQYkkgLK~~~~iL~--------k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~--------------------- 70 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILK--------KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRN--------------------- 70 (700)
T ss_pred HHHHHhHHHHHHHHHH--------hCCccchhHHhccchhhcccchHHHHHHHHHHhcc---------------------
Confidence 3566676766666665 33444555666788899999999998766654221
Q ss_pred cCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchHH
Q 013867 159 LGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLL 238 (435)
Q Consensus 159 ~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~e 238 (435)
| ..+.++-.++.++....+ +|. +++.++..|+++ . ++...+.-.++.+-..+|+|+-
T Consensus 71 ---d-~~S~vCwHv~gl~~R~dK-~Y~--eaiKcy~nAl~~-----~-----------~dN~qilrDlslLQ~QmRd~~~ 127 (700)
T KOG1156|consen 71 ---D-LKSHVCWHVLGLLQRSDK-KYD--EAIKCYRNALKI-----E-----------KDNLQILRDLSLLQIQMRDYEG 127 (700)
T ss_pred ---C-cccchhHHHHHHHHhhhh-hHH--HHHHHHHHHHhc-----C-----------CCcHHHHHHHHHHHHHHHhhhh
Confidence 1 122333344444443332 244 556666666653 1 2333455555555566788877
Q ss_pred HHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHH
Q 013867 239 AKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVV 318 (435)
Q Consensus 239 Ae~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~ 318 (435)
...--.+-|+.. . + ..++...+|..+.-.|+|..|.++.+.--.-.+ .-|+.-..
T Consensus 128 ~~~tr~~LLql~---~--------~---------~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~-----~~~s~~~~ 182 (700)
T KOG1156|consen 128 YLETRNQLLQLR---P--------S---------QRASWIGFAVAQHLLGEYKMALEILEEFEKTQN-----TSPSKEDY 182 (700)
T ss_pred HHHHHHHHHHhh---h--------h---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----cCCCHHHH
Confidence 666666666552 1 1 224567788888888999888887766554444 45666666
Q ss_pred HHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHHHhhHh
Q 013867 319 LTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQ 386 (435)
Q Consensus 319 L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~ 386 (435)
=.....+|+.|-..+. +.++.|+++....-+.--|-.....-.+.++..+|+++||..++
T Consensus 183 e~se~~Ly~n~i~~E~--------g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y 242 (700)
T KOG1156|consen 183 EHSELLLYQNQILIEA--------GSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVY 242 (700)
T ss_pred HHHHHHHHHHHHHHHc--------ccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHH
Confidence 6777888888755432 44888888874221111121223334667778888999887765
No 197
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=95.80 E-value=0.79 Score=40.61 Aligned_cols=110 Identities=17% Similarity=0.184 Sum_probs=77.5
Q ss_pred HHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHH--HHHHHHHHcCCHHHHHHHHHHHHHH
Q 013867 226 YGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATF--ALGQLEAHMGNFGDAEEILTRTLTK 303 (435)
Q Consensus 226 la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~--nLa~ly~~qG~y~eAe~l~~rAL~I 303 (435)
-++--..-|-|++|..-|++|+++. ..-+.... -||---.++| .|+..+...|+|+|+..--.+||--
T Consensus 15 ~ae~ql~~g~~~eAa~s~r~AM~~s---rtiP~eEa-------FDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~Y 84 (144)
T PF12968_consen 15 DAERQLQDGAYEEAAASCRKAMEVS---RTIPAEEA-------FDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRY 84 (144)
T ss_dssp HHHHHHHHT-HHHHHHHHHHHHHHH---TTS-TTS----------HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHh---ccCChHhh-------cccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 3444445789999999999999993 32111111 1222334444 7999999999999999999999987
Q ss_pred HHHhhCCCChhHH----HHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 304 TEELFGSHHPKVG----VVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 304 ~e~~lG~~HP~va----~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
+.+ -|+=|-+.+ .+..+-|..+...|+.++| .+-|+.+-++.
T Consensus 85 FNR-RGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA------~~~fr~agEMi 130 (144)
T PF12968_consen 85 FNR-RGELHQDEGKLWIAAVFSRAVALEGLGRKEEA------LKEFRMAGEMI 130 (144)
T ss_dssp HHH-H--TTSTHHHHHHHHHHHHHHHHHHTT-HHHH------HHHHHHHHHHH
T ss_pred Hhh-ccccccccchhHHHHHHHHHHHHHhcCChHHH------HHHHHHHHHHH
Confidence 765 588888754 4567889999999998876 88999999987
No 198
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=95.61 E-value=0.09 Score=49.36 Aligned_cols=77 Identities=17% Similarity=0.291 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHH
Q 013867 274 LAATFALGQLEAHMGNF---GDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALE 350 (435)
Q Consensus 274 l~~l~nLa~ly~~qG~y---~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~ 350 (435)
..+|+|.|..+..+.++ .|+..+|+.|++.+|+.+-- +|+-..++.|||..|..+|....- -.+|+.+|++|.+
T Consensus 25 adnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I-~P~~hdAlw~lGnA~ts~A~l~~d--~~~A~~~F~kA~~ 101 (186)
T PF06552_consen 25 ADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKI-NPNKHDALWCLGNAYTSLAFLTPD--TAEAEEYFEKATE 101 (186)
T ss_dssp HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc-CCchHHHHHHHHHHHHHHHhhcCC--hHHHHHHHHHHHH
Confidence 35788999988888777 56889999999999998853 688888999999999999986432 3577888888888
Q ss_pred Hhc
Q 013867 351 FLK 353 (435)
Q Consensus 351 I~k 353 (435)
-++
T Consensus 102 ~Fq 104 (186)
T PF06552_consen 102 YFQ 104 (186)
T ss_dssp HHH
T ss_pred HHH
Confidence 884
No 199
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=95.59 E-value=0.069 Score=55.96 Aligned_cols=98 Identities=17% Similarity=0.182 Sum_probs=68.5
Q ss_pred CCCChHHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013867 55 GLNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKV 134 (435)
Q Consensus 55 g~~~~~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ra 134 (435)
-...|+++..|+++-+.. ++..+|+.++.++|. +.|.-+..|.-.+..+.++|+|+.|+++.+++
T Consensus 196 ~~~~pev~~~LA~v~l~~-------~~E~~AI~ll~~aL~--------~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~a 260 (395)
T PF09295_consen 196 RERDPEVAVLLARVYLLM-------NEEVEAIRLLNEALK--------ENPQDSELLNLQAEFLLSKKKYELALEIAKKA 260 (395)
T ss_pred HhcCCcHHHHHHHHHHhc-------CcHHHHHHHHHHHHH--------hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 344466665555544432 245677777777772 23444777888888899999999999999998
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHH
Q 013867 135 ENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADK 171 (435)
Q Consensus 135 l~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~ 171 (435)
..+..+.+ .+|..|+..|..+|+++.|+...+.
T Consensus 261 v~lsP~~f----~~W~~La~~Yi~~~d~e~ALlaLNs 293 (395)
T PF09295_consen 261 VELSPSEF----ETWYQLAECYIQLGDFENALLALNS 293 (395)
T ss_pred HHhCchhH----HHHHHHHHHHHhcCCHHHHHHHHhc
Confidence 87766554 3678888899999988877755443
No 200
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.59 E-value=0.26 Score=48.82 Aligned_cols=128 Identities=19% Similarity=0.164 Sum_probs=86.6
Q ss_pred HHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHH-HHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHH--
Q 013867 231 HATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALA-ATFALGQLEAHMG-NFGDAEEILTRTLTKTEE-- 306 (435)
Q Consensus 231 ~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~-~l~nLa~ly~~qG-~y~eAe~l~~rAL~I~e~-- 306 (435)
..+|+++.|+.+|.|+-.... . .++.. ...++ .+.|.|.-....+ +|++|..+++||++|.++
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~--~--~~~~~---------~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~ 70 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLN--S--LDPDM---------AEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPG 70 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHh--c--CCcHH---------HHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhh
Confidence 579999999999999988832 1 11111 11334 4569999999999 999999999999999877
Q ss_pred hhCCCChhH----HHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHH---hcCCCCCCCchhhhhccHHHHHHHhcCH
Q 013867 307 LFGSHHPKV----GVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEF---LKAPPLESEGVETKVDRTDIVALARGGY 379 (435)
Q Consensus 307 ~lG~~HP~v----a~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I---~k~~~~~hp~~a~~l~nla~~~~a~G~y 379 (435)
-.+..||+. ..+|..|+..|-..+.++. +.+|+.+ .+.-.++||.+. +-.+.++.. .+++
T Consensus 71 ~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~----------~~ka~~~l~~l~~e~~~~~~~~--~L~l~il~~-~~~~ 137 (278)
T PF08631_consen 71 KMDKLSPDGSELRLSILRLLANAYLEWDTYES----------VEKALNALRLLESEYGNKPEVF--LLKLEILLK-SFDE 137 (278)
T ss_pred hccccCCcHHHHHHHHHHHHHHHHHcCCChHH----------HHHHHHHHHHHHHhCCCCcHHH--HHHHHHHhc-cCCh
Confidence 356788886 7889999999988877542 4444444 433356666533 112333333 3555
Q ss_pred HHHhh
Q 013867 380 AEALS 384 (435)
Q Consensus 380 aeal~ 384 (435)
+++..
T Consensus 138 ~~~~~ 142 (278)
T PF08631_consen 138 EEYEE 142 (278)
T ss_pred hHHHH
Confidence 54444
No 201
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=95.57 E-value=3.5 Score=42.73 Aligned_cols=222 Identities=12% Similarity=0.060 Sum_probs=128.7
Q ss_pred CChHHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013867 57 NSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVEN 136 (435)
Q Consensus 57 ~~~~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~ 136 (435)
..|..+..-..++-.+- ..|.|.+|+..|-.+++. +|.-=.+++..|++|...|+-.-|++=+.+++.
T Consensus 33 ~~~advekhlElGk~ll----a~~Q~sDALt~yHaAve~--------dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle 100 (504)
T KOG0624|consen 33 ASPADVEKHLELGKELL----ARGQLSDALTHYHAAVEG--------DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE 100 (504)
T ss_pred CCHHHHHHHHHHHHHHH----HhhhHHHHHHHHHHHHcC--------CchhHHHHHHHHHHHhhhcCCccchhhHHHHHh
Confidence 34455555566665552 467899999999999843 467778889999999999999999999999988
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhch--------hhHHHHHHHHHHHHHHhcCCC
Q 013867 137 FKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTY--------GAVNSRANAVKGLVELAHGNL 208 (435)
Q Consensus 137 i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~ea--------eal~~~a~Ai~~~~~~lgg~h 208 (435)
+...-.+.|. .-+.+.+.+|+.+.|..-.+..++---.++ .-.++ +.+..+.+ .+-..-+|++
T Consensus 101 lKpDF~~ARi----QRg~vllK~Gele~A~~DF~~vl~~~~s~~--~~~eaqskl~~~~e~~~l~~q---l~s~~~~GD~ 171 (504)
T KOG0624|consen 101 LKPDFMAARI----QRGVVLLKQGELEQAEADFDQVLQHEPSNG--LVLEAQSKLALIQEHWVLVQQ---LKSASGSGDC 171 (504)
T ss_pred cCccHHHHHH----HhchhhhhcccHHHHHHHHHHHHhcCCCcc--hhHHHHHHHHhHHHHHHHHHH---HHHHhcCCch
Confidence 7655544432 223456678888776654443322111111 00011 11111111 1112345665
Q ss_pred ccccccc----ccchhHH--HHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHH
Q 013867 209 ESGLQEE----EGCTGSA--ALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQ 282 (435)
Q Consensus 209 ~~a~~~~----~~~~~~~--a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ 282 (435)
..+.+.. +.+.-++ -...+.+|-..|+-..|+.=.+.|-.. ..+ ..-.+..+.+
T Consensus 172 ~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askL-------------s~D-------nTe~~ykis~ 231 (504)
T KOG0624|consen 172 QNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKL-------------SQD-------NTEGHYKISQ 231 (504)
T ss_pred hhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhc-------------ccc-------chHHHHHHHH
Confidence 5432211 1111111 112355677777777777666555444 111 1134678888
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHH
Q 013867 283 LEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLAL 324 (435)
Q Consensus 283 ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ 324 (435)
||+..|+..++..-.+.+|. |.|+|-.-=..+-.|--
T Consensus 232 L~Y~vgd~~~sL~~iRECLK-----ldpdHK~Cf~~YKklkK 268 (504)
T KOG0624|consen 232 LLYTVGDAENSLKEIRECLK-----LDPDHKLCFPFYKKLKK 268 (504)
T ss_pred HHHhhhhHHHHHHHHHHHHc-----cCcchhhHHHHHHHHHH
Confidence 88999988888877777775 56777654444444433
No 202
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.56 E-value=1.6 Score=43.28 Aligned_cols=222 Identities=13% Similarity=0.053 Sum_probs=133.7
Q ss_pred CCCChHHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013867 55 GLNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKV 134 (435)
Q Consensus 55 g~~~~~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ra 134 (435)
.|+-..-|..|-.=|..+ |- .-+|++|-..++++.+-.+.- .+--+.|..+-..+-+..+.-++.|+..+|++|
T Consensus 24 kad~dgaas~yekAAvaf-Rn---Ak~feKakdcLlkA~~~yEnn--rslfhAAKayEqaamLake~~klsEvvdl~eKA 97 (308)
T KOG1585|consen 24 KADWDGAASLYEKAAVAF-RN---AKKFEKAKDCLLKASKGYENN--RSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKA 97 (308)
T ss_pred CCCchhhHHHHHHHHHHH-Hh---hccHHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 444445555555555555 32 235777777777766555443 222346677777777777777777777777777
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccc
Q 013867 135 ENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQE 214 (435)
Q Consensus 135 l~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~ 214 (435)
.. +|.+-|..++|....++.+.++++..| ++| +..+..++..+. -+++...+.
T Consensus 98 s~------------------lY~E~GspdtAAmaleKAak~lenv~P---d~A--lqlYqralavve--~~dr~~ma~-- 150 (308)
T KOG1585|consen 98 SE------------------LYVECGSPDTAAMALEKAAKALENVKP---DDA--LQLYQRALAVVE--EDDRDQMAF-- 150 (308)
T ss_pred HH------------------HHHHhCCcchHHHHHHHHHHHhhcCCH---HHH--HHHHHHHHHHHh--ccchHHHHH--
Confidence 43 355668888888888888888887663 334 444444444321 112110000
Q ss_pred cccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHH
Q 013867 215 EEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAE 294 (435)
Q Consensus 215 ~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe 294 (435)
......+.+|-...+|+||-..++|-.-+..+... ++. +- ..+..+=.||....+|..|+
T Consensus 151 ------el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~------y~~----~~----k~~va~ilv~L~~~Dyv~ae 210 (308)
T KOG1585|consen 151 ------ELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDA------YNS----QC----KAYVAAILVYLYAHDYVQAE 210 (308)
T ss_pred ------HHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhh------ccc----HH----HHHHHHHHHHhhHHHHHHHH
Confidence 11222345677888999999999887777544332 110 00 11223334666677999999
Q ss_pred HHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhh
Q 013867 295 EILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEH 334 (435)
Q Consensus 295 ~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~ 334 (435)
..|+.+-+| -+-.-|+=..++.||=..|.. |+.|+
T Consensus 211 kc~r~~~qi----p~f~~sed~r~lenLL~ayd~-gD~E~ 245 (308)
T KOG1585|consen 211 KCYRDCSQI----PAFLKSEDSRSLENLLTAYDE-GDIEE 245 (308)
T ss_pred HHhcchhcC----ccccChHHHHHHHHHHHHhcc-CCHHH
Confidence 999988776 334556677788888888865 45444
No 203
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=95.53 E-value=0.028 Score=37.06 Aligned_cols=30 Identities=23% Similarity=0.521 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 013867 276 ATFALGQLEAHMGNFGDAEEILTRTLTKTE 305 (435)
Q Consensus 276 ~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e 305 (435)
++..+|.+|..+|++++|...|++++++..
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 467899999999999999999999999864
No 204
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=95.52 E-value=0.068 Score=54.79 Aligned_cols=59 Identities=17% Similarity=0.160 Sum_probs=47.6
Q ss_pred HHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 013867 227 GEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTE 305 (435)
Q Consensus 227 a~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e 305 (435)
|.-|..||+|+||+.+|-++++.. .++.+ ...|-|..|.++.+|..||.-.+.|++.-.
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~-------P~NpV-------------~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~ 162 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVY-------PHNPV-------------YHINRALAYLKQKSFAQAEEDCEAAIALDK 162 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccC-------CCCcc-------------chhhHHHHHHHHHHHHHHHHhHHHHHHhhH
Confidence 556899999999999999999881 11111 135889999999999999999999998754
No 205
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=95.48 E-value=2.2 Score=44.55 Aligned_cols=70 Identities=11% Similarity=0.083 Sum_probs=56.8
Q ss_pred ccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHH
Q 013867 216 EGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEE 295 (435)
Q Consensus 216 ~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~ 295 (435)
||+.+.....+|.+|...+.|.+|...++.|+.- + .. ....+-||-++..+|+-.+|+.
T Consensus 324 h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~-----~------~s----------~~~~~~la~~~~~~g~~~~A~~ 382 (400)
T COG3071 324 HPEDPLLLSTLGRLALKNKLWGKASEALEAALKL-----R------PS----------ASDYAELADALDQLGEPEEAEQ 382 (400)
T ss_pred CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc-----C------CC----------hhhHHHHHHHHHHcCChHHHHH
Confidence 5666677788999999999999999999988866 1 11 1234679999999999999999
Q ss_pred HHHHHHHHHHH
Q 013867 296 ILTRTLTKTEE 306 (435)
Q Consensus 296 l~~rAL~I~e~ 306 (435)
.++.+|..+..
T Consensus 383 ~r~e~L~~~~~ 393 (400)
T COG3071 383 VRREALLLTRQ 393 (400)
T ss_pred HHHHHHHHhcC
Confidence 99999966544
No 206
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.48 E-value=4.5 Score=43.50 Aligned_cols=202 Identities=12% Similarity=0.137 Sum_probs=128.5
Q ss_pred hhcHHHHHHHHHHHHhccCcCCCC--CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 013867 79 DESYSQGMLVLEQCLSTQPSDGQL--AESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLY 156 (435)
Q Consensus 79 ~G~Y~eA~~~~eqaL~i~~~~lG~--~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~ 156 (435)
.|+|.+|++-..+...-..+.=++ -.-..+....-+|.--.+-|-|+.|+-.|..|.+..++. .+..-.-=|++..|
T Consensus 336 ~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~-dl~a~~nlnlAi~Y 414 (629)
T KOG2300|consen 336 RGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESI-DLQAFCNLNLAISY 414 (629)
T ss_pred hCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHH-HHHHHHHHhHHHHH
Confidence 578999998887777655444221 112366777777777788899999999999887665433 11111111344444
Q ss_pred HhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccc-hhHHHHHHHHHHHHhhc
Q 013867 157 LQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGC-TGSAALSYGEYLHATRN 235 (435)
Q Consensus 157 ~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~-~~~~a~~la~~~~~~G~ 235 (435)
+.++.. +.++ ...+.++..+... ....+ -+++..-+|-+...|++
T Consensus 415 L~~~~~-------------------------ed~y-------~~ld~i~p~nt~s--~ssq~l~a~~~~v~glfaf~qn~ 460 (629)
T KOG2300|consen 415 LRIGDA-------------------------EDLY-------KALDLIGPLNTNS--LSSQRLEASILYVYGLFAFKQND 460 (629)
T ss_pred HHhccH-------------------------HHHH-------HHHHhcCCCCCCc--chHHHHHHHHHHHHHHHHHHhcc
Confidence 444322 1111 1112233332110 00000 12344446777789999
Q ss_pred hHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhH
Q 013867 236 FLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKV 315 (435)
Q Consensus 236 y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~v 315 (435)
|.||..+..+.|.+. +..+ ..-++.-++.-||.+....|+-.|++.+.+-+++...|. +|||-.
T Consensus 461 lnEaK~~l~e~Lkma-naed-------------~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi--~Di~vq 524 (629)
T KOG2300|consen 461 LNEAKRFLRETLKMA-NAED-------------LNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKI--PDIPVQ 524 (629)
T ss_pred HHHHHHHHHHHHhhc-chhh-------------HHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcC--CCchHH
Confidence 999999999999993 1111 111222356678999999999999999999999998876 688888
Q ss_pred HHHHHHHHHHHHHhhh
Q 013867 316 GVVLTCLALMFRNKAM 331 (435)
Q Consensus 316 a~~L~nLA~ly~~qG~ 331 (435)
.-+..-+-.+|..-|.
T Consensus 525 Lws~si~~~L~~a~g~ 540 (629)
T KOG2300|consen 525 LWSSSILTDLYQALGE 540 (629)
T ss_pred HHHHHHHHHHHHHhCc
Confidence 7777777788887776
No 207
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.48 E-value=3 Score=41.34 Aligned_cols=101 Identities=17% Similarity=0.115 Sum_probs=71.0
Q ss_pred hhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhhhh----------HHHHHH
Q 013867 79 DESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESG-NYVEAIEKLQKVENFKNSI----------LGVRVA 147 (435)
Q Consensus 79 ~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qG-ky~eA~~l~~ral~i~e~~----------L~i~va 147 (435)
+|+++.|+.+|.|+=..........-..++..++|.|.-..+++ +|++|...+++|.++.+.. ...+..
T Consensus 6 ~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~ 85 (278)
T PF08631_consen 6 QGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLS 85 (278)
T ss_pred hCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHH
Confidence 68999999999999766643333344678889999999999999 9999999999999996441 123455
Q ss_pred HHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcC
Q 013867 148 AMEALAGLYLQLGQDDTSSVVADKCLQLCEKHK 180 (435)
Q Consensus 148 ale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~ 180 (435)
++-.|+..|++.+.++ ...-+.+.++.++...
T Consensus 86 iL~~La~~~l~~~~~~-~~~ka~~~l~~l~~e~ 117 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYE-SVEKALNALRLLESEY 117 (278)
T ss_pred HHHHHHHHHHcCCChH-HHHHHHHHHHHHHHhC
Confidence 6667777777776553 2222334444454433
No 208
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.45 E-value=0.31 Score=47.75 Aligned_cols=134 Identities=16% Similarity=0.181 Sum_probs=73.9
Q ss_pred CCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHh-hhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhh
Q 013867 288 GNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNK-AMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKV 366 (435)
Q Consensus 288 G~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~q-G~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l 366 (435)
++-.+|...+++|++|+-..--= ..-|.-...+|.+|..- -++++ |...|++|-+.++- .+....+..-
T Consensus 87 ~~~~eAv~cL~~aieIyt~~Grf--~~aAk~~~~iaEiyEsdl~d~ek------aI~~YE~Aae~yk~--ees~ssANKC 156 (288)
T KOG1586|consen 87 VDPEEAVNCLEKAIEIYTDMGRF--TMAAKHHIEIAEIYESDLQDFEK------AIAHYEQAAEYYKG--EESVSSANKC 156 (288)
T ss_pred cChHHHHHHHHHHHHHHHhhhHH--HHHHhhhhhHHHHHhhhHHHHHH------HHHHHHHHHHHHcc--hhhhhhHHHH
Confidence 36666666666666666432110 01222334556666543 44444 48888888888862 2221111111
Q ss_pred ccHH--HHHHHhcCHHHHhhHh--hhhhhHHHHHHHHHHHHh----------cccchhHHHHhcccCCCCCCceeeeccc
Q 013867 367 DRTD--IVALARGGYAEALSVQ--QNRKDEGERMKRWAEAAW----------RNRRVSLAEALNFSEPSNKPLVIDARTS 432 (435)
Q Consensus 367 ~nla--~~~~a~G~yaeal~~~--~~r~~eae~~~~~a~~~~----------~~~r~~l~~~l~~~~~~~~~~~~~~r~~ 432 (435)
++- ...-..|+|.+|..++ ..|.+-..++.+|+.+=+ +-.-++-..||+.-+.. .|...|+|=|
T Consensus 157 -~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~-dP~F~dsREc 234 (288)
T KOG1586|consen 157 -LLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQEL-DPAFTDSREC 234 (288)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhc-CCcccccHHH
Confidence 111 1122457899998886 344555677777766533 34445666677766555 6778888865
Q ss_pred c
Q 013867 433 R 433 (435)
Q Consensus 433 r 433 (435)
.
T Consensus 235 k 235 (288)
T KOG1586|consen 235 K 235 (288)
T ss_pred H
Confidence 4
No 209
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.42 E-value=1.1 Score=44.21 Aligned_cols=184 Identities=14% Similarity=0.172 Sum_probs=107.5
Q ss_pred ChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 013867 78 SDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYL 157 (435)
Q Consensus 78 s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~ 157 (435)
..|+|++|+..|+...+-. +-.|..=+++..++-.+++.|+|++|+....+=+.....+-.+.
T Consensus 46 ~~gn~~~A~~~fe~l~~~~-----p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d------------ 108 (254)
T COG4105 46 QKGNYEEAIKYFEALDSRH-----PFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD------------ 108 (254)
T ss_pred hcCCHHHHHHHHHHHHHcC-----CCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh------------
Confidence 3689999999999987433 44577888999999999999999999988877654443332221
Q ss_pred hcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccc------c---ccccchhHHHHHHHH
Q 013867 158 QLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGL------Q---EEEGCTGSAALSYGE 228 (435)
Q Consensus 158 ~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~------~---~~~~~~~~~a~~la~ 228 (435)
-.++-.++..+..-. ....|..+ -..|+..+-+.+ .++|... . ...+.+..-=...|.
T Consensus 109 --------Y~~YlkgLs~~~~i~-~~~rDq~~---~~~A~~~f~~~i-~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~Iar 175 (254)
T COG4105 109 --------YAYYLKGLSYFFQID-DVTRDQSA---ARAAFAAFKELV-QRYPNSRYAPDAKARIVKLNDALAGHEMAIAR 175 (254)
T ss_pred --------HHHHHHHHHHhccCC-ccccCHHH---HHHHHHHHHHHH-HHCCCCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 112222222111100 00111111 222222221111 2333211 0 000000011123577
Q ss_pred HHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhh
Q 013867 229 YLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELF 308 (435)
Q Consensus 229 ~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~l 308 (435)
+|...|.|--|.--+++.++-+..+. . +--++--|...|..+|-.++|.. ..+++
T Consensus 176 yY~kr~~~~AA~nR~~~v~e~y~~t~------~-----------~~eaL~~l~eaY~~lgl~~~a~~--------~~~vl 230 (254)
T COG4105 176 YYLKRGAYVAAINRFEEVLENYPDTS------A-----------VREALARLEEAYYALGLTDEAKK--------TAKVL 230 (254)
T ss_pred HHHHhcChHHHHHHHHHHHhcccccc------c-----------hHHHHHHHHHHHHHhCChHHHHH--------HHHHH
Confidence 89999999999999999887742211 1 11367788899999999999975 46778
Q ss_pred CCCChhHH
Q 013867 309 GSHHPKVG 316 (435)
Q Consensus 309 G~~HP~va 316 (435)
|.+-|+.-
T Consensus 231 ~~N~p~s~ 238 (254)
T COG4105 231 GANYPDSQ 238 (254)
T ss_pred HhcCCCCc
Confidence 87777654
No 210
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=95.36 E-value=0.082 Score=43.84 Aligned_cols=62 Identities=19% Similarity=0.293 Sum_probs=50.9
Q ss_pred hhcHHHHHHHHHHHHhccCcCCCCCc-chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhh
Q 013867 79 DESYSQGMLVLEQCLSTQPSDGQLAE-SWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNS 140 (435)
Q Consensus 79 ~G~Y~eA~~~~eqaL~i~~~~lG~~H-p~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~ 140 (435)
.|+|.+|++-+.+.+..........+ -.....+.++|.++...|++++|+..++.++.+...
T Consensus 11 ~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are 73 (94)
T PF12862_consen 11 SGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARE 73 (94)
T ss_pred cCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 46899999999999998877655442 235666889999999999999999999999776543
No 211
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.36 E-value=0.36 Score=43.69 Aligned_cols=87 Identities=16% Similarity=0.156 Sum_probs=67.4
Q ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013867 223 ALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLT 302 (435)
Q Consensus 223 a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~ 302 (435)
+.+-|.-....|+|++|+..++....-+ ..|.- .-.+-.+|+-+|..+|+|++|..-|+|-+.
T Consensus 13 ly~~a~~~l~~~~Y~~A~~~le~L~~ry----------P~g~y-------a~qAqL~l~yayy~~~~y~~A~a~~~rFir 75 (142)
T PF13512_consen 13 LYQEAQEALQKGNYEEAIKQLEALDTRY----------PFGEY-------AEQAQLDLAYAYYKQGDYEEAIAAYDRFIR 75 (142)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcC----------CCCcc-------cHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3334555567899999999888765431 22210 124667999999999999999999999887
Q ss_pred HHHHhhCCCChhHHHHHHHHHHHHHHhhh
Q 013867 303 KTEELFGSHHPKVGVVLTCLALMFRNKAM 331 (435)
Q Consensus 303 I~e~~lG~~HP~va~~L~nLA~ly~~qG~ 331 (435)
+=|.||.|--++.-.|..+..|..
T Consensus 76 -----LhP~hp~vdYa~Y~~gL~~~~~~~ 99 (142)
T PF13512_consen 76 -----LHPTHPNVDYAYYMRGLSYYEQDE 99 (142)
T ss_pred -----hCCCCCCccHHHHHHHHHHHHHhh
Confidence 469999999999999999988864
No 212
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=95.18 E-value=0.76 Score=50.53 Aligned_cols=74 Identities=11% Similarity=0.076 Sum_probs=56.9
Q ss_pred CCChHHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013867 56 LNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVE 135 (435)
Q Consensus 56 ~~~~~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral 135 (435)
|+|+ .++.-.|+.+. +.|+-++|...-..++.+..+ --...+-+|.+++.--+|++|+..|+.|+
T Consensus 38 ~eHg---eslAmkGL~L~----~lg~~~ea~~~vr~glr~d~~--------S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl 102 (700)
T KOG1156|consen 38 PEHG---ESLAMKGLTLN----CLGKKEEAYELVRLGLRNDLK--------SHVCWHVLGLLQRSDKKYDEAIKCYRNAL 102 (700)
T ss_pred Cccc---hhHHhccchhh----cccchHHHHHHHHHHhccCcc--------cchhHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 4554 45556677763 678999999999999975543 23456789999999999999999999999
Q ss_pred HhhhhhHHH
Q 013867 136 NFKNSILGV 144 (435)
Q Consensus 136 ~i~e~~L~i 144 (435)
.+-...+.|
T Consensus 103 ~~~~dN~qi 111 (700)
T KOG1156|consen 103 KIEKDNLQI 111 (700)
T ss_pred hcCCCcHHH
Confidence 887666555
No 213
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.12 E-value=3.3 Score=45.86 Aligned_cols=148 Identities=16% Similarity=0.209 Sum_probs=100.7
Q ss_pred cchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 013867 217 GCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEI 296 (435)
Q Consensus 217 ~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l 296 (435)
...+..-..+|.+|...|+.+.|-.+|++|+.. . ..+ -++ .....++.|..-....+|+.|..+
T Consensus 384 Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V---~-------y~~-----v~d-La~vw~~waemElrh~~~~~Al~l 447 (835)
T KOG2047|consen 384 GSPGTLWVEFAKLYENNGDLDDARVIFEKATKV---P-------YKT-----VED-LAEVWCAWAEMELRHENFEAALKL 447 (835)
T ss_pred CChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcC---C-------ccc-----hHH-HHHHHHHHHHHHHhhhhHHHHHHH
Confidence 345567788999999999999999999999987 1 111 111 123568999999999999999999
Q ss_pred HHHHHHHH---H-HhhCCCChhHHHHHHHHHHHHHHhhhhhhhh-hhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHH
Q 013867 297 LTRTLTKT---E-ELFGSHHPKVGVVLTCLALMFRNKAMQEHSS-ALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDI 371 (435)
Q Consensus 297 ~~rAL~I~---e-~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~-~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~ 371 (435)
.++|...= + ..|...||--+. +.+--.++..-.+++++. .+..-...|.|.++++=+ .| .++-|-|.
T Consensus 448 m~~A~~vP~~~~~~~yd~~~pvQ~r-lhrSlkiWs~y~DleEs~gtfestk~vYdriidLria----TP---qii~NyAm 519 (835)
T KOG2047|consen 448 MRRATHVPTNPELEYYDNSEPVQAR-LHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA----TP---QIIINYAM 519 (835)
T ss_pred HHhhhcCCCchhhhhhcCCCcHHHH-HHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC----CH---HHHHHHHH
Confidence 99999762 2 456666764444 444334555555666652 122224567777777632 23 35567888
Q ss_pred HHHHhcCHHHHhhHhhh
Q 013867 372 VALARGGYAEALSVQQN 388 (435)
Q Consensus 372 ~~~a~G~yaeal~~~~~ 388 (435)
.+...-.++++..++++
T Consensus 520 fLEeh~yfeesFk~YEr 536 (835)
T KOG2047|consen 520 FLEEHKYFEESFKAYER 536 (835)
T ss_pred HHHhhHHHHHHHHHHHc
Confidence 88777778888777754
No 214
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=95.07 E-value=1.4 Score=48.87 Aligned_cols=206 Identities=17% Similarity=0.071 Sum_probs=120.0
Q ss_pred cHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHH------HHHHHHH--
Q 013867 81 SYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVR------VAAMEAL-- 152 (435)
Q Consensus 81 ~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~------vaale~L-- 152 (435)
.|++|..+|.|+.++. -|..++..=+.+.+.+|+.++|+.+++.++...+-...+. ....+++
T Consensus 633 e~eraR~llakar~~s---------gTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~ 703 (913)
T KOG0495|consen 633 ELERARDLLAKARSIS---------GTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEM 703 (913)
T ss_pred cHHHHHHHHHHHhccC---------CcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHH
Confidence 6999999999998754 2677888888899999999999999999987665432221 1111111
Q ss_pred -HHHHHhcC----CCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHH
Q 013867 153 -AGLYLQLG----QDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYG 227 (435)
Q Consensus 153 -~g~~~~~g----~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la 227 (435)
...| .+| |.. ..+.-.+..+-++++. ..++.+|-....+-. |. +..+-++
T Consensus 704 aR~aY-~~G~k~cP~~--ipLWllLakleEk~~~---------~~rAR~ildrarlkN-----------Pk--~~~lwle 758 (913)
T KOG0495|consen 704 AREAY-LQGTKKCPNS--IPLWLLLAKLEEKDGQ---------LVRARSILDRARLKN-----------PK--NALLWLE 758 (913)
T ss_pred HHHHH-HhccccCCCC--chHHHHHHHHHHHhcc---------hhhHHHHHHHHHhcC-----------CC--cchhHHH
Confidence 0011 111 111 1222222333333331 134444433221111 11 1222233
Q ss_pred H--HHHHhhchHHHHHHHHHHHHHHHH--------hcccCCCC--C-----cccccccchHHHHHHHHHHHHHHHHcCCH
Q 013867 228 E--YLHATRNFLLAKKFYQKVIEVLAE--------QKDFSDMN--T-----LGSCNMALEEVALAATFALGQLEAHMGNF 290 (435)
Q Consensus 228 ~--~~~~~G~y~eAe~ly~rAL~I~~~--------~~~~~~~~--~-----l~~~~~~~~~~~l~~l~nLa~ly~~qG~y 290 (435)
. +-..-|+-++|+.+.-|||+-+.. ..-++.+. . +--|.+.| | .++..|.++....+|
T Consensus 759 ~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dp-h----Vllaia~lfw~e~k~ 833 (913)
T KOG0495|consen 759 SIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDP-H----VLLAIAKLFWSEKKI 833 (913)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCc-h----hHHHHHHHHHHHHHH
Confidence 2 334679999999999999864211 00001110 0 11133322 2 356789999999999
Q ss_pred HHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhh
Q 013867 291 GDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQE 333 (435)
Q Consensus 291 ~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e 333 (435)
++|.+.|+||+.+ .|+.+.+..++=..+...|.-+
T Consensus 834 ~kar~Wf~Ravk~--------d~d~GD~wa~fykfel~hG~ee 868 (913)
T KOG0495|consen 834 EKAREWFERAVKK--------DPDNGDAWAWFYKFELRHGTEE 868 (913)
T ss_pred HHHHHHHHHHHcc--------CCccchHHHHHHHHHHHhCCHH
Confidence 9999999999976 6778888888777788888643
No 215
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.02 E-value=0.42 Score=42.00 Aligned_cols=113 Identities=14% Similarity=0.096 Sum_probs=76.0
Q ss_pred HHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccc-----hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 013867 230 LHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMAL-----EEVALAATFALGQLEAHMGNFGDAEEILTRTLTKT 304 (435)
Q Consensus 230 ~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~-----~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~ 304 (435)
....|+.+.+...+++++.++ .|..-..........+ ....+.++..++..+...|+|++|+.++++++.+
T Consensus 16 ~~~~~~~~~~~~~~~~al~ly---~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~- 91 (146)
T PF03704_consen 16 AARAGDPEEAIELLEEALALY---RGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALAL- 91 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHTT-----SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-
T ss_pred HHHCCCHHHHHHHHHHHHHHh---CCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc-
Confidence 345688999999999999995 4411100000000001 1223445667888999999999999999999987
Q ss_pred HHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhc-CCCCCC
Q 013867 305 EELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLK-APPLES 359 (435)
Q Consensus 305 e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k-~~~~~h 359 (435)
+|.--..+..|-.+|..+|++.+| ...|++.-..++ .+|.+-
T Consensus 92 -------dP~~E~~~~~lm~~~~~~g~~~~A------~~~Y~~~~~~l~~elg~~P 134 (146)
T PF03704_consen 92 -------DPYDEEAYRLLMRALAAQGRRAEA------LRVYERYRRRLREELGIEP 134 (146)
T ss_dssp -------STT-HHHHHHHHHHHHHTT-HHHH------HHHHHHHHHHHHHHHS---
T ss_pred -------CCCCHHHHHHHHHHHHHCcCHHHH------HHHHHHHHHHHHHHhCcCc
Confidence 777778888999999999997766 899999999985 566543
No 216
>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.
Probab=94.92 E-value=0.061 Score=50.36 Aligned_cols=43 Identities=23% Similarity=0.262 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhH
Q 013867 273 ALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKV 315 (435)
Q Consensus 273 ~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~v 315 (435)
.+.+++||-.=|.+||+|..|.++-++||+-.++..|.+||+|
T Consensus 139 rl~tL~nlv~q~~~q~r~evav~~~KqalEdl~~~~~~~~~~v 181 (181)
T PF09311_consen 139 RLRTLHNLVIQYESQGRYEVAVPLCKQALEDLEKESGHKHPDV 181 (181)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHH-SSSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcccCC
Confidence 6789999999999999999999999999999999999999997
No 217
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=94.92 E-value=2.1 Score=50.84 Aligned_cols=211 Identities=15% Similarity=0.138 Sum_probs=132.5
Q ss_pred ChHHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 013867 58 SNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENF 137 (435)
Q Consensus 58 ~~~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i 137 (435)
||+-+.--|+|=.=+ -..+..++|..+.|+||..---.=+.+-..+..+|.||=..|. -=+.=.+.|+||-+.
T Consensus 1454 sPNSSi~WI~YMaf~----LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG---~eesl~kVFeRAcqy 1526 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFH----LELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYG---TEESLKKVFERACQY 1526 (1710)
T ss_pred CCCcchHHHHHHHHH----hhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhC---cHHHHHHHHHHHHHh
Confidence 344444445543222 1356889999999999985421122344568888888888876 334445566666332
Q ss_pred hhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCccccccccc
Q 013867 138 KNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEG 217 (435)
Q Consensus 138 ~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~ 217 (435)
. .+..+...+..++++-++ +.+|..++ +.+++..+ +
T Consensus 1527 c-------------------------d~~~V~~~L~~iy~k~ek--~~~A~ell------~~m~KKF~-q---------- 1562 (1710)
T KOG1070|consen 1527 C-------------------------DAYTVHLKLLGIYEKSEK--NDEADELL------RLMLKKFG-Q---------- 1562 (1710)
T ss_pred c-------------------------chHHHHHHHHHHHHHhhc--chhHHHHH------HHHHHHhc-c----------
Confidence 2 222334445555555443 33332221 12223343 1
Q ss_pred chhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 013867 218 CTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEIL 297 (435)
Q Consensus 218 ~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~ 297 (435)
...+-..|+.++..|.+-++|-.+.+|||.-..+. +| +.-+.--|+|-.+-|+-+++..+|
T Consensus 1563 -~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~----------------eH--v~~IskfAqLEFk~GDaeRGRtlf 1623 (1710)
T KOG1070|consen 1563 -TRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQ----------------EH--VEFISKFAQLEFKYGDAERGRTLF 1623 (1710)
T ss_pred -hhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchh----------------hh--HHHHHHHHHHHhhcCCchhhHHHH
Confidence 12355678889999999999999999999885321 12 234567899999999999988888
Q ss_pred HHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 298 TRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 298 ~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
+--|. .||.--...+-....=..+|..+. .+.||+|+++.-
T Consensus 1624 Egll~--------ayPKRtDlW~VYid~eik~~~~~~------vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1624 EGLLS--------AYPKRTDLWSVYIDMEIKHGDIKY------VRDLFERVIELK 1664 (1710)
T ss_pred HHHHh--------hCccchhHHHHHHHHHHccCCHHH------HHHHHHHHHhcC
Confidence 87775 577766666666666666666443 489999999874
No 218
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=94.82 E-value=0.26 Score=43.32 Aligned_cols=70 Identities=20% Similarity=0.132 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013867 221 SAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRT 300 (435)
Q Consensus 221 ~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rA 300 (435)
.+...++..+...|+|++|+.++++++.+ +|. .+ .....|-.+|..+|++.+|...|++.
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~---------dP~-------~E----~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALAL---------DPY-------DE----EAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH---------STT--------H----HHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhc---------CCC-------CH----HHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 35556777888999999999999999999 111 11 23456788999999999999999999
Q ss_pred HHHHHHhhCC
Q 013867 301 LTKTEELFGS 310 (435)
Q Consensus 301 L~I~e~~lG~ 310 (435)
-....+-+|-
T Consensus 123 ~~~l~~elg~ 132 (146)
T PF03704_consen 123 RRRLREELGI 132 (146)
T ss_dssp HHHHHHHHS-
T ss_pred HHHHHHHhCc
Confidence 9999999996
No 219
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=94.61 E-value=0.18 Score=50.58 Aligned_cols=93 Identities=25% Similarity=0.280 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCC
Q 013867 276 ATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAP 355 (435)
Q Consensus 276 ~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~ 355 (435)
...-||.+|..+|+++.|..-|.+|+.+. ++.|+ .+--+|.++..|..-.. -.++..++++||.
T Consensus 158 gW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-----g~n~~---~~~g~aeaL~~~a~~~~---ta~a~~ll~~al~----- 221 (287)
T COG4235 158 GWDLLGRAYMALGRASDALLAYRNALRLA-----GDNPE---ILLGLAEALYYQAGQQM---TAKARALLRQALA----- 221 (287)
T ss_pred hHHHHHHHHHHhcchhHHHHHHHHHHHhC-----CCCHH---HHHHHHHHHHHhcCCcc---cHHHHHHHHHHHh-----
Confidence 45578999999999999999999999873 44454 45556666555543321 1356777777765
Q ss_pred CCCCCchhhhhccHHHHHHHhcCHHHHhhHh
Q 013867 356 PLESEGVETKVDRTDIVALARGGYAEALSVQ 386 (435)
Q Consensus 356 ~~~hp~~a~~l~nla~~~~a~G~yaeal~~~ 386 (435)
.||-++ +.+..++..+..+|+|++|...+
T Consensus 222 -~D~~~i-ral~lLA~~afe~g~~~~A~~~W 250 (287)
T COG4235 222 -LDPANI-RALSLLAFAAFEQGDYAEAAAAW 250 (287)
T ss_pred -cCCccH-HHHHHHHHHHHHcccHHHHHHHH
Confidence 455553 36777999999999999998876
No 220
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=94.44 E-value=0.017 Score=60.85 Aligned_cols=122 Identities=17% Similarity=0.189 Sum_probs=82.4
Q ss_pred hhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCC
Q 013867 233 TRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVA--LAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGS 310 (435)
Q Consensus 233 ~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~--l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~ 310 (435)
..+.-.|..++.+|++.... .++ ..+-.....|.+.+ ..-.+|-..+-.--++. .++--++|-|+|+++|+
T Consensus 259 k~D~~~al~~w~~aMe~r~~-~~e---~~~e~e~~~p~~ay~~~re~~~~~elE~lv~D~---d~~RmqaLiirerILgp 331 (615)
T KOG0508|consen 259 KRDLLGALKYWRRAMEERES-DGE---SILEKEPLEPVLAYGYGREVNNREELEELVEDP---DEMRMQALIIRERILGP 331 (615)
T ss_pred hHHHHHHHHHHHHHHHhhhh-ccc---cccccCCCCchhhhhhhhhcCCHHHHHHHhcCh---HHHHHHHHHHHHHHhCC
Confidence 34666788899999988654 111 11110000011100 00112333333333333 34667999999999999
Q ss_pred CChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh-cCCCCCCCchhhhhc
Q 013867 311 HHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL-KAPPLESEGVETKVD 367 (435)
Q Consensus 311 ~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~-k~~~~~hp~~a~~l~ 367 (435)
.||+|.--+.-.+-+|..+|+++.- ..|+.-||++. |.+.|-.|.|++++-
T Consensus 332 sh~d~sYyir~rgavyad~g~~~rC------i~LWkyAL~mqQk~l~PlspmT~ssll 383 (615)
T KOG0508|consen 332 SHPDVSYYIRYRGAVYADSGEFERC------IRLWKYALDMQQKNLEPLSPMTASSLL 383 (615)
T ss_pred CCCCceeEEEeeeeeecCCccHHHH------HHHHHHHHHHHHhhcCCCCcccHHHHH
Confidence 9999999999999999999998876 89999999998 567888888887774
No 221
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.37 E-value=0.097 Score=37.07 Aligned_cols=30 Identities=20% Similarity=0.174 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 013867 110 SLLAMSTLLYESGNYVEAIEKLQKVENFKN 139 (435)
Q Consensus 110 ~l~nLa~ly~~qGky~eA~~l~~ral~i~e 139 (435)
++..||.+|..+|++++|+..|+++++...
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P 32 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDP 32 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 567899999999999999999999966543
No 222
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.36 E-value=6.1 Score=39.34 Aligned_cols=93 Identities=22% Similarity=0.211 Sum_probs=69.3
Q ss_pred HHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhh
Q 013867 229 YLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELF 308 (435)
Q Consensus 229 ~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~l 308 (435)
+..+||+--+|+.-...=|+++- + | .-+..-|+.+|...|.|++|.-+|++.+-|
T Consensus 129 ilka~GK~l~aIk~ln~YL~~F~-----------~------D---~EAW~eLaeiY~~~~~f~kA~fClEE~ll~----- 183 (289)
T KOG3060|consen 129 ILKAQGKNLEAIKELNEYLDKFM-----------N------D---QEAWHELAEIYLSEGDFEKAAFCLEELLLI----- 183 (289)
T ss_pred HHHHcCCcHHHHHHHHHHHHHhc-----------C------c---HHHHHHHHHHHHhHhHHHHHHHHHHHHHHc-----
Confidence 44566666666665555555531 0 0 124567899999999999999999999976
Q ss_pred CCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 309 GSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 309 G~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
.|..-...--||.++..+|-. .++.-|..+|.|||+|-
T Consensus 184 ---~P~n~l~f~rlae~~Yt~gg~---eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 184 ---QPFNPLYFQRLAEVLYTQGGA---ENLELARKYYERALKLN 221 (289)
T ss_pred ---CCCcHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHhC
Confidence 466666777888888888873 45777899999999997
No 223
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.33 E-value=5.6 Score=41.42 Aligned_cols=48 Identities=15% Similarity=0.263 Sum_probs=38.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhh
Q 013867 278 FALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQE 333 (435)
Q Consensus 278 ~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e 333 (435)
..||.+.+..-.|.||...|+|.|. +.|.....=.++|..|....-|+
T Consensus 155 LSLAsvhYmR~HYQeAIdvYkrvL~--------dn~ey~alNVy~ALCyyKlDYyd 202 (557)
T KOG3785|consen 155 LSLASVHYMRMHYQEAIDVYKRVLQ--------DNPEYIALNVYMALCYYKLDYYD 202 (557)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHh--------cChhhhhhHHHHHHHHHhcchhh
Confidence 3577777878888999999988886 67777777789999999875544
No 224
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=94.24 E-value=0.37 Score=53.47 Aligned_cols=107 Identities=15% Similarity=0.022 Sum_probs=80.7
Q ss_pred hHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013867 220 GSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTR 299 (435)
Q Consensus 220 ~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~r 299 (435)
..+-.++|.+.-..+++..|...|.|.+.. . |++ .-+.|||+..|...|+-.+|-..+++
T Consensus 519 ~~~wf~~G~~ALqlek~q~av~aF~rcvtL-----------~-------Pd~--~eaWnNls~ayi~~~~k~ra~~~l~E 578 (777)
T KOG1128|consen 519 LGTWFGLGCAALQLEKEQAAVKAFHRCVTL-----------E-------PDN--AEAWNNLSTAYIRLKKKKRAFRKLKE 578 (777)
T ss_pred hhHHHhccHHHHHHhhhHHHHHHHHHHhhc-----------C-------CCc--hhhhhhhhHHHHHHhhhHHHHHHHHH
Confidence 345566777888899999999999999976 1 111 24689999999999999999999999
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCC-CCCCC
Q 013867 300 TLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAP-PLESE 360 (435)
Q Consensus 300 AL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~-~~~hp 360 (435)
||.-. -+|+.+=. |--.+-..-|.+++| ...|.|-+.+.+.. -++|+
T Consensus 579 AlKcn-----~~~w~iWE---Nymlvsvdvge~eda------~~A~~rll~~~~~~~d~~vl 626 (777)
T KOG1128|consen 579 ALKCN-----YQHWQIWE---NYMLVSVDVGEFEDA------IKAYHRLLDLRKKYKDDEVL 626 (777)
T ss_pred HhhcC-----CCCCeeee---chhhhhhhcccHHHH------HHHHHHHHHhhhhcccchhh
Confidence 99753 57776543 344455677777766 89999999998642 33444
No 225
>PRK11906 transcriptional regulator; Provisional
Probab=94.01 E-value=1 Score=47.98 Aligned_cols=155 Identities=14% Similarity=0.133 Sum_probs=95.6
Q ss_pred hhchHHHHHHHHHHH---HHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHH---cCCH------HHHHHHHHHH
Q 013867 233 TRNFLLAKKFYQKVI---EVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAH---MGNF------GDAEEILTRT 300 (435)
Q Consensus 233 ~G~y~eAe~ly~rAL---~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~---qG~y------~eAe~l~~rA 300 (435)
.-.-+.|..++.||+ ++ .|..+ .+++.|+..|.. +|-. .+|..+-++|
T Consensus 271 ~~~~~~Al~lf~ra~~~~~l---------dp~~a-----------~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rA 330 (458)
T PRK11906 271 PESIYRAMTIFDRLQNKSDI---------QTLKT-----------ECYCLLAECHMSLALHGKSELELAAQKALELLDYV 330 (458)
T ss_pred HHHHHHHHHHHHHHhhcccC---------CcccH-----------HHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 345678999999999 55 12222 344555554432 2333 3444555555
Q ss_pred HHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHH
Q 013867 301 LTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYA 380 (435)
Q Consensus 301 L~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~ya 380 (435)
+++ ++ .=+.++..+|.++...|+++.| ..+++||+.+- |+.+......+.+..-.|+.+
T Consensus 331 vel-----d~---~Da~a~~~~g~~~~~~~~~~~a------~~~f~rA~~L~-------Pn~A~~~~~~~~~~~~~G~~~ 389 (458)
T PRK11906 331 SDI-----TT---VDGKILAIMGLITGLSGQAKVS------HILFEQAKIHS-------TDIASLYYYRALVHFHNEKIE 389 (458)
T ss_pred Hhc-----CC---CCHHHHHHHHHHHHhhcchhhH------HHHHHHHhhcC-------CccHHHHHHHHHHHHHcCCHH
Confidence 543 33 3456778888888888887655 89999999876 666667777888888889999
Q ss_pred HHhhHhhh--hhh----HHHHHHHHHHHHhcccchhHHHHhcccCCC--CCCceeee
Q 013867 381 EALSVQQN--RKD----EGERMKRWAEAAWRNRRVSLAEALNFSEPS--NKPLVIDA 429 (435)
Q Consensus 381 eal~~~~~--r~~----eae~~~~~a~~~~~~~r~~l~~~l~~~~~~--~~~~~~~~ 429 (435)
+|....++ |-+ .+-.++.|-..+..+ ++.-+=.|...|.- +.-|+||.
T Consensus 390 ~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 445 (458)
T PRK11906 390 EARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIKLYYKETESESHRVIIDN 445 (458)
T ss_pred HHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhHHHHhhccccccchhhHHH
Confidence 99775432 111 234444555555544 34555555544433 45578873
No 226
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=93.99 E-value=0.083 Score=32.07 Aligned_cols=29 Identities=24% Similarity=0.457 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 013867 276 ATFALGQLEAHMGNFGDAEEILTRTLTKT 304 (435)
Q Consensus 276 ~l~nLa~ly~~qG~y~eAe~l~~rAL~I~ 304 (435)
...++|.+|..+|+|++|...|++++.+.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~ 31 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELD 31 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence 45789999999999999999999999763
No 227
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=93.98 E-value=0.77 Score=46.13 Aligned_cols=105 Identities=14% Similarity=0.091 Sum_probs=74.7
Q ss_pred hHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCC---HHHHHHH
Q 013867 220 GSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGN---FGDAEEI 296 (435)
Q Consensus 220 ~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~---y~eAe~l 296 (435)
+.--.-+|.+|..+|+++.|..-|.+|+.+ .+ ++ | ..+..+|.++..|.. -.+|..+
T Consensus 156 ~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL----~g--~n---------~-----~~~~g~aeaL~~~a~~~~ta~a~~l 215 (287)
T COG4235 156 AEGWDLLGRAYMALGRASDALLAYRNALRL----AG--DN---------P-----EILLGLAEALYYQAGQQMTAKARAL 215 (287)
T ss_pred chhHHHHHHHHHHhcchhHHHHHHHHHHHh----CC--CC---------H-----HHHHHHHHHHHHhcCCcccHHHHHH
Confidence 334445799999999999999999999999 11 11 1 345677777665543 4568888
Q ss_pred HHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCc
Q 013867 297 LTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEG 361 (435)
Q Consensus 297 ~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~ 361 (435)
+++||.. || .=..++.-||.-+..+|+|.+| ...++.-|+.. +++.|.
T Consensus 216 l~~al~~-------D~-~~iral~lLA~~afe~g~~~~A------~~~Wq~lL~~l---p~~~~r 263 (287)
T COG4235 216 LRQALAL-------DP-ANIRALSLLAFAAFEQGDYAEA------AAAWQMLLDLL---PADDPR 263 (287)
T ss_pred HHHHHhc-------CC-ccHHHHHHHHHHHHHcccHHHH------HHHHHHHHhcC---CCCCch
Confidence 8888764 44 4446788899999999997766 66677666554 455553
No 228
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.88 E-value=0.54 Score=45.24 Aligned_cols=105 Identities=20% Similarity=0.209 Sum_probs=71.4
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchh
Q 013867 106 WRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYK 185 (435)
Q Consensus 106 ~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~ 185 (435)
.-+..+-.=|+-++..|.|.+|...|..|+++..+...- ..+..+.++.+.+. +.++ ++
T Consensus 93 ~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e------------------~rsIly~Nraaa~i-Kl~k--~e 151 (271)
T KOG4234|consen 93 EKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTE------------------ERSILYSNRAAALI-KLRK--WE 151 (271)
T ss_pred HHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHH------------------HHHHHHhhhHHHHH-Hhhh--HH
Confidence 345667777888999999999999999999988765321 11112223333322 2221 33
Q ss_pred chhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Q 013867 186 TYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEV 249 (435)
Q Consensus 186 eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I 249 (435)
.++....+||. ++ |.+..+....|.+|..+.+|++|..=|++.+++
T Consensus 152 --~aI~dcsKaie-----l~-----------pty~kAl~RRAeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 152 --SAIEDCSKAIE-----LN-----------PTYEKALERRAEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred --HHHHHHHhhHh-----cC-----------chhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 34555666665 22 344456667799999999999999999999988
No 229
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=93.79 E-value=0.65 Score=43.70 Aligned_cols=34 Identities=18% Similarity=0.238 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHcCC----HHHHHHHHHHHHHHHHHhh
Q 013867 275 AATFALGQLEAHMGN----FGDAEEILTRTLTKTEELF 308 (435)
Q Consensus 275 ~~l~nLa~ly~~qG~----y~eAe~l~~rAL~I~e~~l 308 (435)
.++.+||+.|.++|. -.+|+.+|++|..-+++..
T Consensus 70 dAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv 107 (186)
T PF06552_consen 70 DALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAV 107 (186)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHH
Confidence 578999999999886 4578888888887776643
No 230
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=93.67 E-value=5.9 Score=38.78 Aligned_cols=207 Identities=14% Similarity=0.151 Sum_probs=107.1
Q ss_pred ChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 013867 78 SDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYL 157 (435)
Q Consensus 78 s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~ 157 (435)
|.|-.+-|.-=|.|+|+|. |+.+.++|-||.-+..-|+|+.|.+.|.-.+++..+- .-+-+|.-..+|
T Consensus 77 SlGL~~LAR~DftQaLai~--------P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y---~Ya~lNRgi~~Y- 144 (297)
T COG4785 77 SLGLRALARNDFSQALAIR--------PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY---NYAHLNRGIALY- 144 (297)
T ss_pred hhhHHHHHhhhhhhhhhcC--------CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcc---hHHHhccceeee-
Confidence 5566666666667777666 7788899999999999999999999998887655322 111122111111
Q ss_pred hcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHH--------HHHHHHHHHhcCCCcccccccccchhHHHHHHHHH
Q 013867 158 QLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRA--------NAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEY 229 (435)
Q Consensus 158 ~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a--------~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~ 229 (435)
--|++..|. +.....++..-++.| ..+-.+- +|-..+++...|. + +.. ..-++-.+
T Consensus 145 Y~gR~~LAq---~d~~~fYQ~D~~DPf---R~LWLYl~E~k~dP~~A~tnL~qR~~~~-d------~e~---WG~~iV~~ 208 (297)
T COG4785 145 YGGRYKLAQ---DDLLAFYQDDPNDPF---RSLWLYLNEQKLDPKQAKTNLKQRAEKS-D------KEQ---WGWNIVEF 208 (297)
T ss_pred ecCchHhhH---HHHHHHHhcCCCChH---HHHHHHHHHhhCCHHHHHHHHHHHHHhc-c------Hhh---hhHHHHHH
Confidence 123333322 122222222111111 1111110 0011111111110 0 011 11122222
Q ss_pred HHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhC
Q 013867 230 LHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFG 309 (435)
Q Consensus 230 ~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG 309 (435)
| .|+..+ +.+++|+.+..++ ...++ +++ .-+..-||-.|..+|+.++|..+|+-|++-..=-|
T Consensus 209 y--LgkiS~-e~l~~~~~a~a~~------n~~~A------e~L-TEtyFYL~K~~l~~G~~~~A~~LfKLaiannVynf- 271 (297)
T COG4785 209 Y--LGKISE-ETLMERLKADATD------NTSLA------EHL-TETYFYLGKYYLSLGDLDEATALFKLAVANNVYNF- 271 (297)
T ss_pred H--HhhccH-HHHHHHHHhhccc------hHHHH------HHH-HHHHHHHHHHHhccccHHHHHHHHHHHHHHhHHHH-
Confidence 2 355544 5678888777432 11222 222 23677899999999999999999998776533222
Q ss_pred CCChhHHHHHHHHHHHHHHhhhh
Q 013867 310 SHHPKVGVVLTCLALMFRNKAMQ 332 (435)
Q Consensus 310 ~~HP~va~~L~nLA~ly~~qG~~ 332 (435)
-..--++.-|+.++..|.+.
T Consensus 272 ---VE~RyA~~EL~~l~q~~~~l 291 (297)
T COG4785 272 ---VEHRYALLELSLLGQDQDDL 291 (297)
T ss_pred ---HHHHHHHHHHHHhccccchh
Confidence 11233455566666665443
No 231
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=93.48 E-value=0.09 Score=31.90 Aligned_cols=29 Identities=24% Similarity=0.378 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 013867 109 ISLLAMSTLLYESGNYVEAIEKLQKVENF 137 (435)
Q Consensus 109 ~~l~nLa~ly~~qGky~eA~~l~~ral~i 137 (435)
..+.++|.+|..+|+|++|+..|++++.+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 46789999999999999999999998654
No 232
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=93.42 E-value=0.12 Score=53.15 Aligned_cols=61 Identities=15% Similarity=0.125 Sum_probs=49.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 278 FALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 278 ~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
---|+-|.+||+|+||..+|.++++. .|.-.....|.|..|-.+.++..| |.=+.-|+.+-
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia~--------~P~NpV~~~NRA~AYlk~K~FA~A------E~DC~~AiaLd 161 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIAV--------YPHNPVYHINRALAYLKQKSFAQA------EEDCEAAIALD 161 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhcc--------CCCCccchhhHHHHHHHHHHHHHH------HHhHHHHHHhh
Confidence 34588999999999999999999975 466678899999999999886544 77676666654
No 233
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.29 E-value=1.2 Score=41.55 Aligned_cols=97 Identities=9% Similarity=0.067 Sum_probs=66.6
Q ss_pred hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013867 219 TGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILT 298 (435)
Q Consensus 219 ~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~ 298 (435)
+-.+...+|.+|.+.|++++|...|.|+.+- ..+ +.| .+....++-.+...+|+|.....+..
T Consensus 35 ir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~-----------~~~-----~~~-~id~~l~~irv~i~~~d~~~v~~~i~ 97 (177)
T PF10602_consen 35 IRMALEDLADHYCKIGDLEEALKAYSRARDY-----------CTS-----PGH-KIDMCLNVIRVAIFFGDWSHVEKYIE 97 (177)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh-----------cCC-----HHH-HHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 4456677899999999999999999997765 222 222 23455678888889999999999999
Q ss_pred HHHHHHHHhhCCCChhHHHHHHHHHHH-HHHhhhhhhh
Q 013867 299 RTLTKTEELFGSHHPKVGVVLTCLALM-FRNKAMQEHS 335 (435)
Q Consensus 299 rAL~I~e~~lG~~HP~va~~L~nLA~l-y~~qG~~e~A 335 (435)
+|-.+-++ |.+ ++.-.-|.....+ +-.+++|.+|
T Consensus 98 ka~~~~~~--~~d-~~~~nrlk~~~gL~~l~~r~f~~A 132 (177)
T PF10602_consen 98 KAESLIEK--GGD-WERRNRLKVYEGLANLAQRDFKEA 132 (177)
T ss_pred HHHHHHhc--cch-HHHHHHHHHHHHHHHHHhchHHHH
Confidence 99999988 322 4443333332222 2345565443
No 234
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=93.25 E-value=0.12 Score=33.36 Aligned_cols=28 Identities=21% Similarity=0.464 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 013867 276 ATFALGQLEAHMGNFGDAEEILTRTLTK 303 (435)
Q Consensus 276 ~l~nLa~ly~~qG~y~eAe~l~~rAL~I 303 (435)
++.++|.+|..+|++++|...|++.+.-
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4679999999999999999999999874
No 235
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=93.05 E-value=0.14 Score=33.09 Aligned_cols=27 Identities=33% Similarity=0.570 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013867 110 SLLAMSTLLYESGNYVEAIEKLQKVEN 136 (435)
Q Consensus 110 ~l~nLa~ly~~qGky~eA~~l~~ral~ 136 (435)
++.++|.+|..+|++++|+..|++.++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 578999999999999999999998754
No 236
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=92.92 E-value=4 Score=47.25 Aligned_cols=222 Identities=17% Similarity=0.110 Sum_probs=121.0
Q ss_pred ChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHH------HHHHH-
Q 013867 78 SDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVR------VAAME- 150 (435)
Q Consensus 78 s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~------vaale- 150 (435)
..|+|.=|.-+|-+++--. |--.-+..|+|.++...-+++.|.+.|.+++.+...-+-.. ..+++
T Consensus 828 g~gnva~aQHCfIks~~se--------p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ 899 (1238)
T KOG1127|consen 828 GIGNVACAQHCFIKSRFSE--------PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGR 899 (1238)
T ss_pred ccchhhhhhhhhhhhhhcc--------ccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHH
Confidence 3588999999998877333 44556778999999999999999999988887665432210 00111
Q ss_pred ---HH--HHH--HHhcCCCcchHHHHHHHHHHHH-hcCCCchh----chhhHHHHHHHHHHHHHHhcCCCcccccccccc
Q 013867 151 ---AL--AGL--YLQLGQDDTSSVVADKCLQLCE-KHKPENYK----TYGAVNSRANAVKGLVELAHGNLESGLQEEEGC 218 (435)
Q Consensus 151 ---~L--~g~--~~~~g~~~~A~~~~~~~~~l~~-~~~~~~~~----eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~ 218 (435)
.+ +.. ...+|......-.+-.|.-... ..+ +++ .++.+-.-..++. +.++ +|| +
T Consensus 900 ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng--~~e~~I~t~~ki~sAs~al~---~yf~-~~p--------~ 965 (1238)
T KOG1127|consen 900 IIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNG--NIEESINTARKISSASLALS---YYFL-GHP--------Q 965 (1238)
T ss_pred HHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhcc--chHHHHHHhhhhhhhHHHHH---HHHh-cCc--------c
Confidence 00 000 1222322111111111111111 111 111 1122222222222 2233 333 2
Q ss_pred hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013867 219 TGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILT 298 (435)
Q Consensus 219 ~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~ 298 (435)
..-+..-.+.++..++.|.+|.+++.|.+.+.+........+ .+--++|.++...|.|+.|..-+.
T Consensus 966 ~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqyn--------------vak~~~gRL~lslgefe~A~~a~~ 1031 (1238)
T KOG1127|consen 966 LCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYN--------------VAKPDAGRLELSLGEFESAKKASW 1031 (1238)
T ss_pred hhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh--------------hhhhhhhhhhhhhcchhhHhhhhc
Confidence 223334446678889999999999999999987655421111 123578999999999997754322
Q ss_pred H-HHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhc
Q 013867 299 R-TLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLK 353 (435)
Q Consensus 299 r-AL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k 353 (435)
. -++..|..-| +..++ .-.++|+++ +..|+|||-|.+
T Consensus 1032 ~~~~evdEdi~g-----t~l~l-------Ffkndf~~s------l~~fe~aLsis~ 1069 (1238)
T KOG1127|consen 1032 KEWMEVDEDIRG-----TDLTL-------FFKNDFFSS------LEFFEQALSISN 1069 (1238)
T ss_pred ccchhHHHHHhh-----hhHHH-------HHHhHHHHH------HHHHHHHhhhcc
Confidence 1 1222333222 22222 345676665 788888888875
No 237
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=92.81 E-value=0.14 Score=32.41 Aligned_cols=24 Identities=33% Similarity=0.433 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHH
Q 013867 276 ATFALGQLEAHMGNFGDAEEILTR 299 (435)
Q Consensus 276 ~l~nLa~ly~~qG~y~eAe~l~~r 299 (435)
+..+||.+|..+|++++|+.+++|
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhC
Confidence 457999999999999999999874
No 238
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=92.79 E-value=0.32 Score=34.13 Aligned_cols=36 Identities=28% Similarity=0.296 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCC
Q 013867 276 ATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSH 311 (435)
Q Consensus 276 ~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~ 311 (435)
++.-||.+-...++|++|..=|++||+|+++.+.++
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~~~~ 38 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEIQEELLPPE 38 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 345789999999999999999999999999998764
No 239
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=92.73 E-value=5.8 Score=45.31 Aligned_cols=71 Identities=15% Similarity=0.127 Sum_probs=51.7
Q ss_pred CCChHHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013867 56 LNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVE 135 (435)
Q Consensus 56 ~~~~~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral 135 (435)
..||+.-...+=-|+++.| +|++++|..++|- + . ..++++. .++..|-.+|.++|++++|..+|+++.
T Consensus 37 kk~Pn~~~a~vLkaLsl~r----~gk~~ea~~~Le~-~---~-~~~~~D~---~tLq~l~~~y~d~~~~d~~~~~Ye~~~ 104 (932)
T KOG2053|consen 37 KKHPNALYAKVLKALSLFR----LGKGDEALKLLEA-L---Y-GLKGTDD---LTLQFLQNVYRDLGKLDEAVHLYERAN 104 (932)
T ss_pred HHCCCcHHHHHHHHHHHHH----hcCchhHHHHHhh-h---c-cCCCCch---HHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 4678777777788888865 6899999955553 2 2 2233332 455667789999999999999999985
Q ss_pred Hhh
Q 013867 136 NFK 138 (435)
Q Consensus 136 ~i~ 138 (435)
.-.
T Consensus 105 ~~~ 107 (932)
T KOG2053|consen 105 QKY 107 (932)
T ss_pred hhC
Confidence 443
No 240
>PRK11906 transcriptional regulator; Provisional
Probab=92.27 E-value=2 Score=45.80 Aligned_cols=85 Identities=9% Similarity=0.054 Sum_probs=68.3
Q ss_pred hchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCh
Q 013867 234 RNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHP 313 (435)
Q Consensus 234 G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP 313 (435)
..-.+|..+-+||+++ . + . ...++..+|.++...|+++.|..+|+||+.+ .|
T Consensus 318 ~~~~~a~~~A~rAvel---d-----~-~-----------Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--------~P 369 (458)
T PRK11906 318 LAAQKALELLDYVSDI---T-----T-V-----------DGKILAIMGLITGLSGQAKVSHILFEQAKIH--------ST 369 (458)
T ss_pred HHHHHHHHHHHHHHhc---C-----C-C-----------CHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--------CC
Confidence 3445788888888888 1 1 0 1146778899999999999999999999986 68
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 314 KVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 314 ~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
+.|.++.-.|.+..--|+.++| ....++|+..-
T Consensus 370 n~A~~~~~~~~~~~~~G~~~~a------~~~i~~alrLs 402 (458)
T PRK11906 370 DIASLYYYRALVHFHNEKIEEA------RICIDKSLQLE 402 (458)
T ss_pred ccHHHHHHHHHHHHHcCCHHHH------HHHHHHHhccC
Confidence 8999999999999999998776 78888887764
No 241
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=92.25 E-value=1.2 Score=36.44 Aligned_cols=69 Identities=16% Similarity=0.033 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 013867 60 PVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENF 137 (435)
Q Consensus 60 ~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i 137 (435)
.+|..++.-++.+. .+-+.++|+..++++|+... +-|+.=.++..|..+|.+.|+|.+.+.+.-+=+++
T Consensus 4 ~~ak~~ie~GlkLY----~~~~~~~Al~~W~~aL~k~~-----~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 4 DQAKQQIEKGLKLY----HQNETQQALQKWRKALEKIT-----DREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHHHHHHHh----ccchHHHHHHHHHHHHhhcC-----ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888888874 24589999999999998774 34678888999999999999999998876554333
No 242
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.17 E-value=0.96 Score=42.10 Aligned_cols=99 Identities=13% Similarity=0.069 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcC
Q 013867 275 AATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKA 354 (435)
Q Consensus 275 ~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~ 354 (435)
.++..+|..|.+.|++++|.+.|.++. +...++.| +....-++-.+.--.+++... .....+|-.+.+.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~---~~~~~~~~--~id~~l~~irv~i~~~d~~~v------~~~i~ka~~~~~~ 105 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRAR---DYCTSPGH--KIDMCLNVIRVAIFFGDWSHV------EKYIEKAESLIEK 105 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHh---hhcCCHHH--HHHHHHHHHHHHHHhCCHHHH------HHHHHHHHHHHhc
Confidence 467899999999999999999999954 45666666 667777777788888887665 6778888888865
Q ss_pred CCCCCCchhhhhc-cHHHHHHHhcCHHHHhhHh
Q 013867 355 PPLESEGVETKVD-RTDIVALARGGYAEALSVQ 386 (435)
Q Consensus 355 ~~~~hp~~a~~l~-nla~~~~a~G~yaeal~~~ 386 (435)
.+ ..+...-+. .-++.++.+|+|.+|-..+
T Consensus 106 ~~--d~~~~nrlk~~~gL~~l~~r~f~~AA~~f 136 (177)
T PF10602_consen 106 GG--DWERRNRLKVYEGLANLAQRDFKEAAELF 136 (177)
T ss_pred cc--hHHHHHHHHHHHHHHHHHhchHHHHHHHH
Confidence 22 233222222 3566677889999887765
No 243
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=91.80 E-value=0.68 Score=47.97 Aligned_cols=141 Identities=19% Similarity=0.207 Sum_probs=84.7
Q ss_pred hchHHHHHHHHHHHHHHHHhcccCCCCCccc-ccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCC
Q 013867 234 RNFLLAKKFYQKVIEVLAEQKDFSDMNTLGS-CNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHH 312 (435)
Q Consensus 234 G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~-~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~H 312 (435)
..|.++...|..+++.. ++..+.. -..+|=| +.++.-++.++..||++..|-++.+|||-+.|.++.+.=
T Consensus 8 ~~Y~~~q~~F~~~v~~~-------Dp~~l~~ll~~~PyH--idtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F 78 (360)
T PF04910_consen 8 KAYQEAQEQFYAAVQSH-------DPNALINLLQKNPYH--IDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSF 78 (360)
T ss_pred HHHHHHHHHHHHHHHcc-------CHHHHHHHHHHCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34777777777777652 1111110 0012333 468899999999999999999999999999998875543
Q ss_pred hhHHHHH------------HHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCC-CCCCC-chhhhhccHHHHHHHhcC
Q 013867 313 PKVGVVL------------TCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAP-PLESE-GVETKVDRTDIVALARGG 378 (435)
Q Consensus 313 P~va~~L------------~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~-~~~hp-~~a~~l~nla~~~~a~G~ 378 (435)
+...... .|.. +|..--+|-++ ..-.+.++.|+|+.|-+ ..|.. |-.-++--++..++.-++
T Consensus 79 ~~~~~~~~~g~~rL~~~~~eNR~-fflal~r~i~~---L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~ 154 (360)
T PF04910_consen 79 SPFRSNLTSGNCRLDYRRPENRQ-FFLALFRYIQS---LGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQ 154 (360)
T ss_pred hhhhcccccCccccCCccccchH-HHHHHHHHHHH---HHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCC
Confidence 2211010 0111 12222222221 12268899999999853 44443 323345557777777788
Q ss_pred HHHHhhHhh
Q 013867 379 YAEALSVQQ 387 (435)
Q Consensus 379 yaeal~~~~ 387 (435)
|.-.+.+..
T Consensus 155 y~~Li~~~~ 163 (360)
T PF04910_consen 155 YQWLIDFSE 163 (360)
T ss_pred HHHHHHHHH
Confidence 887777664
No 244
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.74 E-value=22 Score=38.49 Aligned_cols=242 Identities=16% Similarity=0.149 Sum_probs=136.7
Q ss_pred hhcHHHHHHHHHHHHhccCcCCCCCcchH------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHH---H--HH
Q 013867 79 DESYSQGMLVLEQCLSTQPSDGQLAESWR------GISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGV---R--VA 147 (435)
Q Consensus 79 ~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~------A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i---~--va 147 (435)
.|-|++|..+-++++.-.++.-..+--+- -+.+-++.-.---.|+|.+|++-.....+...+.-+. + .+
T Consensus 288 ~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~ 367 (629)
T KOG2300|consen 288 AGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEA 367 (629)
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHH
Confidence 57899999999988877665432221111 1234455555666999999998887776655443331 1 11
Q ss_pred HHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHH
Q 013867 148 AMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYG 227 (435)
Q Consensus 148 ale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la 227 (435)
-+.-|.|+| -... .-|++||..+.-+ .+. + ++. +-..-.-.|+|
T Consensus 368 ~ih~LlGly--------------------s~sv-~~~enAe~hf~~a--~k~----t--~~~-------dl~a~~nlnlA 411 (629)
T KOG2300|consen 368 QIHMLLGLY--------------------SHSV-NCYENAEFHFIEA--TKL----T--ESI-------DLQAFCNLNLA 411 (629)
T ss_pred HHHHHHhhH--------------------hhhc-chHHHHHHHHHHH--HHh----h--hHH-------HHHHHHHHhHH
Confidence 233344443 1111 0144455543322 221 0 000 00112334577
Q ss_pred HHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 013867 228 EYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEEL 307 (435)
Q Consensus 228 ~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~ 307 (435)
..|-.+|+ ++.+|+ +++. .+..+.+.+. ..-...+.+.--|.....|++|.||..++.+.|.+.. .
T Consensus 412 i~YL~~~~---~ed~y~-~ld~----i~p~nt~s~s-----sq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkman-a 477 (629)
T KOG2300|consen 412 ISYLRIGD---AEDLYK-ALDL----IGPLNTNSLS-----SQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMAN-A 477 (629)
T ss_pred HHHHHhcc---HHHHHH-HHHh----cCCCCCCcch-----HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcc-h
Confidence 78888765 455554 4443 1211111111 1111222345568888999999999999999999961 1
Q ss_pred hCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcC
Q 013867 308 FGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGG 378 (435)
Q Consensus 308 lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~ 378 (435)
- +..--|+-.|.=|+.+.-.-|+..++ +...+-++..-|+. +|+|-..=+..-+-.++++-|+
T Consensus 478 e-d~~rL~a~~LvLLs~v~lslgn~~es------~nmvrpamqlAkKi-~Di~vqLws~si~~~L~~a~g~ 540 (629)
T KOG2300|consen 478 E-DLNRLTACSLVLLSHVFLSLGNTVES------RNMVRPAMQLAKKI-PDIPVQLWSSSILTDLYQALGE 540 (629)
T ss_pred h-hHHHHHHHHHHHHHHHHHHhcchHHH------HhccchHHHHHhcC-CCchHHHHHHHHHHHHHHHhCc
Confidence 1 12233899999999999999997665 88889999988653 5555422222223344566665
No 245
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=91.56 E-value=0.21 Score=31.61 Aligned_cols=25 Identities=28% Similarity=0.297 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH
Q 013867 109 ISLLAMSTLLYESGNYVEAIEKLQK 133 (435)
Q Consensus 109 ~~l~nLa~ly~~qGky~eA~~l~~r 133 (435)
..+.+||.+|..+|++++|+..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhC
Confidence 4578999999999999999988764
No 246
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.00 E-value=4.5 Score=40.92 Aligned_cols=87 Identities=16% Similarity=0.152 Sum_probs=64.1
Q ss_pred HHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHH---------
Q 013867 229 YLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTR--------- 299 (435)
Q Consensus 229 ~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~r--------- 299 (435)
-....|++.+|.+++..+++... . . + .....|+.+|...|++++|+.++..
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~---~---~---~-----------~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~ 202 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAP---E---N---S-----------EAKLLLAECLLAAGDVEAAQAILAALPLQAQDKA 202 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCc---c---c---c-----------hHHHHHHHHHHHcCChHHHHHHHHhCcccchhhH
Confidence 34678999999999999999831 1 0 1 3456799999999999999998865
Q ss_pred ------HHHHHHHhhCC-----------CChhHHHHHHHHHHHHHHhhhhhhh
Q 013867 300 ------TLTKTEELFGS-----------HHPKVGVVLTCLALMFRNKAMQEHS 335 (435)
Q Consensus 300 ------AL~I~e~~lG~-----------~HP~va~~L~nLA~ly~~qG~~e~A 335 (435)
-++..++.-.. ..|+-...-.-||..|...|++|.|
T Consensus 203 ~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~A 255 (304)
T COG3118 203 AHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAA 255 (304)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 24444433332 2455555667899999999999988
No 247
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=90.54 E-value=4.7 Score=43.19 Aligned_cols=112 Identities=17% Similarity=0.120 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013867 222 AALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTL 301 (435)
Q Consensus 222 ~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL 301 (435)
....-|.++..+|+.++|+..|++++....+.+. +..-++..+|-.+..+++|++|...|.+.+
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Q----------------l~~l~~~El~w~~~~~~~w~~A~~~f~~L~ 332 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQ----------------LHHLCYFELAWCHMFQHDWEEAAEYFLRLL 332 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHh----------------HHHHHHHHHHHHHHHHchHHHHHHHHHHHH
Confidence 3444577899999999999999999965322111 112346689999999999999998888777
Q ss_pred HHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhh-HHHHHHHHHHHHHh-cCCC
Q 013867 302 TKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSAL-LIQEGLYRRALEFL-KAPP 356 (435)
Q Consensus 302 ~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~-~~Ae~Ly~rAL~I~-k~~~ 356 (435)
+ .+..+-+.-..-.|..|...|+.+++... .+|..+++++-... |..|
T Consensus 333 ~-------~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k~~g 382 (468)
T PF10300_consen 333 K-------ESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQKKAG 382 (468)
T ss_pred h-------ccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHhhhcc
Confidence 6 46677888888889999999987444333 56688888888777 3334
No 248
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=89.90 E-value=0.97 Score=40.90 Aligned_cols=54 Identities=19% Similarity=0.295 Sum_probs=45.2
Q ss_pred hhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 013867 79 DESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENF 137 (435)
Q Consensus 79 ~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i 137 (435)
.|+|.+|+..|+....-. |--|..-++...|+.+|+.+|+|++|+.-+++=+.+
T Consensus 23 ~~~Y~~A~~~le~L~~ry-----P~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 23 KGNYEEAIKQLEALDTRY-----PFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred hCCHHHHHHHHHHHHhcC-----CCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 589999999999876555 444677889999999999999999999988886443
No 249
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=89.88 E-value=5.7 Score=42.60 Aligned_cols=79 Identities=18% Similarity=0.078 Sum_probs=53.7
Q ss_pred hhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Q 013867 79 DESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQ 158 (435)
Q Consensus 79 ~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~ 158 (435)
....++|+.+++..+ ..+|.=+-.+..-|.++..+|+.++|++.|+++.......-.+..-..-.++..++-
T Consensus 246 ~~~~~~a~~lL~~~~--------~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~ 317 (468)
T PF10300_consen 246 DVPLEEAEELLEEML--------KRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMF 317 (468)
T ss_pred CCCHHHHHHHHHHHH--------HhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHH
Confidence 456678888888877 445777888999999999999999999999998643333222222223344444555
Q ss_pred cCCCcch
Q 013867 159 LGQDDTS 165 (435)
Q Consensus 159 ~g~~~~A 165 (435)
++++..|
T Consensus 318 ~~~w~~A 324 (468)
T PF10300_consen 318 QHDWEEA 324 (468)
T ss_pred HchHHHH
Confidence 5555443
No 250
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=89.51 E-value=2.9 Score=37.20 Aligned_cols=77 Identities=13% Similarity=0.009 Sum_probs=57.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhH-------HHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHH
Q 013867 279 ALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKV-------GVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEF 351 (435)
Q Consensus 279 nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~v-------a~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I 351 (435)
++|.--...+++-.+.-.|++||.+.|+.--.+.-++ ..+..|||..|+.+|+-+=. ....+=|-+-
T Consensus 6 llAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yE------LkYLqlASE~ 79 (140)
T PF10952_consen 6 LLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYE------LKYLQLASEK 79 (140)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHH------HHHHHHHHHH
Confidence 5777778899999999999999999999843444332 45789999999999996533 5556666665
Q ss_pred hcCCCCCCCc
Q 013867 352 LKAPPLESEG 361 (435)
Q Consensus 352 ~k~~~~~hp~ 361 (435)
.-++-|..|.
T Consensus 80 VltLiPQCp~ 89 (140)
T PF10952_consen 80 VLTLIPQCPN 89 (140)
T ss_pred HHHhccCCCC
Confidence 5556666664
No 251
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=89.41 E-value=0.63 Score=32.64 Aligned_cols=35 Identities=20% Similarity=0.294 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhH
Q 013867 108 GISLLAMSTLLYESGNYVEAIEKLQKVENFKNSIL 142 (435)
Q Consensus 108 A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L 142 (435)
|.++..||.+-...++|++|++=|+++++|.++.+
T Consensus 1 Adv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~ 35 (38)
T PF10516_consen 1 ADVYDLLGEISLENENFEQAIEDYEKALEIQEELL 35 (38)
T ss_pred CcHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc
Confidence 45788999999999999999999999988887654
No 252
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=89.24 E-value=0.89 Score=44.32 Aligned_cols=57 Identities=18% Similarity=0.104 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhh
Q 013867 82 YSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYE-SGNYVEAIEKLQKVENFK 138 (435)
Q Consensus 82 Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~-qGky~eA~~l~~ral~i~ 138 (435)
-++|...|++|+.+..+.+.+.||-......|.+..|++ .|+.++|+++.++|++-.
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a 199 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEA 199 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 479999999999999998999999999999999998755 999999999999986544
No 253
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=88.86 E-value=1.2 Score=47.86 Aligned_cols=82 Identities=15% Similarity=0.080 Sum_probs=60.0
Q ss_pred cHHHHHHHHHHHHhccCcCCCCC----cchH-------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh--hh
Q 013867 81 SYSQGMLVLEQCLSTQPSDGQLA----ESWR-------------GISLLAMSTLLYESGNYVEAIEKLQKVENFKN--SI 141 (435)
Q Consensus 81 ~Y~eA~~~~eqaL~i~~~~lG~~----Hp~~-------------A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e--~~ 141 (435)
.-.||+.+|+|+++..+..+|.+ |.+- .-.-..||...++.|+.+||+++++.-++... +.
T Consensus 215 Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~ 294 (539)
T PF04184_consen 215 TIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDN 294 (539)
T ss_pred CHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccch
Confidence 46799999999999998888743 2110 11234689999999999999999998865432 34
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcchH
Q 013867 142 LGVRVAAMEALAGLYLQLGQDDTSS 166 (435)
Q Consensus 142 L~i~vaale~L~g~~~~~g~~~~A~ 166 (435)
++|+ ++|...+++++.|..++
T Consensus 295 l~Ir----enLie~LLelq~Yad~q 315 (539)
T PF04184_consen 295 LNIR----ENLIEALLELQAYADVQ 315 (539)
T ss_pred hhHH----HHHHHHHHhcCCHHHHH
Confidence 5554 67778888888876544
No 254
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=88.49 E-value=27 Score=35.47 Aligned_cols=78 Identities=19% Similarity=0.325 Sum_probs=51.1
Q ss_pred CCCccc---CCCCChHHHHHHHHHHHHh--------hhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHH
Q 013867 48 GNGNRI---NGLNSNPVVLQMINYALSH--------ARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMST 116 (435)
Q Consensus 48 ~~~~~~---~g~~~~~vA~~m~~~a~~~--------~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ 116 (435)
..|.++ .|+...+-..+++..-+.- ++..-..|++.+|.+.|.+++....+ .......|+.
T Consensus 105 ~dGqpVdgF~G~qPesqlr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~--------~~~~~~~la~ 176 (304)
T COG3118 105 KDGQPVDGFQGAQPESQLRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQAAPE--------NSEAKLLLAE 176 (304)
T ss_pred eCCcCccccCCCCcHHHHHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcc--------cchHHHHHHH
Confidence 345555 4777776655555432221 11223567888999999998876643 3555667888
Q ss_pred HHHHcCCHHHHHHHHHH
Q 013867 117 LLYESGNYVEAIEKLQK 133 (435)
Q Consensus 117 ly~~qGky~eA~~l~~r 133 (435)
+|...|++++|..++..
T Consensus 177 ~~l~~g~~e~A~~iL~~ 193 (304)
T COG3118 177 CLLAAGDVEAAQAILAA 193 (304)
T ss_pred HHHHcCChHHHHHHHHh
Confidence 99999999888877654
No 255
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=88.08 E-value=8.1 Score=41.74 Aligned_cols=135 Identities=17% Similarity=0.132 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013867 221 SAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRT 300 (435)
Q Consensus 221 ~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rA 300 (435)
..+..+-.-....-+..+-+.+-++||+|.. .- ..++.-||. ..----.||+.+|+||
T Consensus 169 r~Aq~IMq~AWRERnp~aRIkaA~eALei~p---------dC-----------AdAYILLAE--EeA~Ti~Eae~l~rqA 226 (539)
T PF04184_consen 169 RPAQEIMQKAWRERNPQARIKAAKEALEINP---------DC-----------ADAYILLAE--EEASTIVEAEELLRQA 226 (539)
T ss_pred CHHHHHHHHHHhcCCHHHHHHHHHHHHHhhh---------hh-----------hHHHhhccc--ccccCHHHHHHHHHHH
Confidence 3444443344677888999999999999921 10 123333332 1223468999999999
Q ss_pred HHHHHHhhCCCChh-----------------HHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchh
Q 013867 301 LTKTEELFGSHHPK-----------------VGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVE 363 (435)
Q Consensus 301 L~I~e~~lG~~HP~-----------------va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a 363 (435)
++..|..+|.+... ..-+-..||...++.|+.+|| ..+|+.-+.-. +.. +..
T Consensus 227 vkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EA------Ik~~rdLlke~--p~~---~~l 295 (539)
T PF04184_consen 227 VKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREA------IKMFRDLLKEF--PNL---DNL 295 (539)
T ss_pred HHHHHHhhchhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHH------HHHHHHHHhhC--Ccc---chh
Confidence 99999999986311 022345699999999997766 66665433322 111 233
Q ss_pred hhhccHHHHHHHhcCHHHHhhHhhh
Q 013867 364 TKVDRTDIVALARGGYAEALSVQQN 388 (435)
Q Consensus 364 ~~l~nla~~~~a~G~yaeal~~~~~ 388 (435)
..-.|+-.+++..++|+++..+-.+
T Consensus 296 ~IrenLie~LLelq~Yad~q~lL~k 320 (539)
T PF04184_consen 296 NIRENLIEALLELQAYADVQALLAK 320 (539)
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 3445788889999999999777644
No 256
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=87.99 E-value=1.7 Score=35.47 Aligned_cols=63 Identities=16% Similarity=0.129 Sum_probs=49.4
Q ss_pred HHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCC
Q 013867 231 HATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGS 310 (435)
Q Consensus 231 ~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~ 310 (435)
+.+.+.++|+..+++||....+ . ++ .-.++.-|.++|.++|+|.+...+-.+=+.|.++.=.|
T Consensus 17 Y~~~~~~~Al~~W~~aL~k~~~--------~-------~~--rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~eled~ 79 (80)
T PF10579_consen 17 YHQNETQQALQKWRKALEKITD--------R-------ED--RFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEELEDP 79 (80)
T ss_pred hccchHHHHHHHHHHHHhhcCC--------h-------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 4677889999999999987311 1 22 33577889999999999999999999999998876443
No 257
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=87.92 E-value=28 Score=33.92 Aligned_cols=64 Identities=14% Similarity=0.115 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHH-HHhhhhhhhhhhHHHHHHHHHHHHHhcCC
Q 013867 290 FGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMF-RNKAMQEHSSALLIQEGLYRRALEFLKAP 355 (435)
Q Consensus 290 y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly-~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~ 355 (435)
-++|...|++|+++.++.+.|.||--....-|.+..| .-.|+.++| ...|..-|..|+.-+..+
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A--~~ia~~afd~a~~~l~~l 206 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKA--IEIAKQAFDEAISELDTL 206 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHH--HHHHHHHHHHHHHGGGGS
T ss_pred HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHH--HHHHHHHHHHHHhhhccc
Confidence 3679999999999999999999999777777777766 668888888 555666677777666544
No 258
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=86.90 E-value=1.4 Score=36.57 Aligned_cols=52 Identities=25% Similarity=0.333 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH---------------HHHhhCCCChhHHHHHHHHHHHH
Q 013867 275 AATFALGQLEAHMGNFGDAEEILTRTLTK---------------TEELFGSHHPKVGVVLTCLALMF 326 (435)
Q Consensus 275 ~~l~nLa~ly~~qG~y~eAe~l~~rAL~I---------------~e~~lG~~HP~va~~L~nLA~ly 326 (435)
.+...||..|...|+|++|.+.+...+.. .=+.+|+.||-|...-..|+.++
T Consensus 23 ~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL~~lL 89 (90)
T PF14561_consen 23 DARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKLASLL 89 (90)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHh
Confidence 57789999999999999999998766543 23468999999998888887764
No 259
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=86.80 E-value=11 Score=39.37 Aligned_cols=141 Identities=16% Similarity=0.115 Sum_probs=79.3
Q ss_pred HHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHHh
Q 013867 67 NYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYE---------SGNYVEAIEKLQKVENF 137 (435)
Q Consensus 67 ~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~---------qGky~eA~~l~~ral~i 137 (435)
.||..+-|.. ..|+.++|+.++++.|.-.. ...|+ ++--+|.+|.+ ....++|+..|+++..+
T Consensus 184 ~yafALnRrn-~~gdre~Al~il~~~l~~~~----~~~~d---~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~ 255 (374)
T PF13281_consen 184 QYAFALNRRN-KPGDREKALQILLPVLESDE----NPDPD---TLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI 255 (374)
T ss_pred HHHHHHhhcc-cCCCHHHHHHHHHHHHhccC----CCChH---HHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC
Confidence 6888887754 46899999999999865443 22333 55556666543 34578899999988776
Q ss_pred hhh-hHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccc
Q 013867 138 KNS-ILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEE 216 (435)
Q Consensus 138 ~e~-~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~ 216 (435)
... ..||.++++=.+.| +++.... .+.....-+.. .+| +-.+. ..
T Consensus 256 ~~~~Y~GIN~AtLL~~~g-----~~~~~~~----------------------el~~i~~~l~~---llg-~kg~~---~~ 301 (374)
T PF13281_consen 256 EPDYYSGINAATLLMLAG-----HDFETSE----------------------ELRKIGVKLSS---LLG-RKGSL---EK 301 (374)
T ss_pred CccccchHHHHHHHHHcC-----CcccchH----------------------HHHHHHHHHHH---HHH-hhccc---cc
Confidence 642 24665555422222 2121111 11111100111 111 10010 01
Q ss_pred cchhHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Q 013867 217 GCTGSAALSYGEYLHATRNFLLAKKFYQKVIEV 249 (435)
Q Consensus 217 ~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I 249 (435)
.......-.++++.--.|++++|.+.+++++..
T Consensus 302 ~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 302 MQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 122344455677777789999999999999966
No 260
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=86.75 E-value=2.6 Score=40.72 Aligned_cols=62 Identities=26% Similarity=0.308 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHH
Q 013867 239 AKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVV 318 (435)
Q Consensus 239 Ae~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~ 318 (435)
|+.+|.+|+.+. |..| ...|-||.++..+|++=+|.=+|.|+|.. .+|. ..+
T Consensus 1 A~~~Y~~A~~l~---------P~~G-----------~p~nQLAvl~~~~~~~l~avy~y~Rsl~~-------~~Pf-~~A 52 (278)
T PF10373_consen 1 AERYYRKAIRLL---------PSNG-----------NPYNQLAVLASYQGDDLDAVYYYIRSLAV-------RIPF-PSA 52 (278)
T ss_dssp HHHHHHHHHHH----------TTBS-----------HHHHHHHHHHHHTT-HHHHHHHHHHHHSS-------SB---HHH
T ss_pred CHHHHHHHHHhC---------CCCC-----------CcccchhhhhccccchHHHHHHHHHHHhc-------CCCc-HHH
Confidence 789999999992 3445 34688999999999999999999999976 7887 788
Q ss_pred HHHHHHHHHH
Q 013867 319 LTCLALMFRN 328 (435)
Q Consensus 319 L~nLA~ly~~ 328 (435)
..||..++..
T Consensus 53 ~~NL~~lf~~ 62 (278)
T PF10373_consen 53 RENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999988
No 261
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=86.50 E-value=14 Score=36.58 Aligned_cols=90 Identities=13% Similarity=0.091 Sum_probs=71.4
Q ss_pred HHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhC
Q 013867 230 LHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFG 309 (435)
Q Consensus 230 ~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG 309 (435)
|..-.+|+.|+..|-|||.| . .+++ .-..|-+..|.+..+|+..+.=-.||+++
T Consensus 20 ~f~~k~y~~ai~~y~raI~~---------n-P~~~----------~Y~tnralchlk~~~~~~v~~dcrralql------ 73 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICI---------N-PTVA----------SYYTNRALCHLKLKHWEPVEEDCRRALQL------ 73 (284)
T ss_pred ccchhhhchHHHHHHHHHhc---------C-CCcc----------hhhhhHHHHHHHhhhhhhhhhhHHHHHhc------
Confidence 34457899999999999988 1 2221 12347777888899999999999999997
Q ss_pred CCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhc
Q 013867 310 SHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLK 353 (435)
Q Consensus 310 ~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k 353 (435)
.|..+....-||........|+ +|.+..+||....+
T Consensus 74 --~~N~vk~h~flg~~~l~s~~~~------eaI~~Lqra~sl~r 109 (284)
T KOG4642|consen 74 --DPNLVKAHYFLGQWLLQSKGYD------EAIKVLQRAYSLLR 109 (284)
T ss_pred --ChHHHHHHHHHHHHHHhhcccc------HHHHHHHHHHHHHh
Confidence 5788888888998888776654 55999999999986
No 262
>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.
Probab=86.22 E-value=0.89 Score=42.57 Aligned_cols=51 Identities=24% Similarity=0.211 Sum_probs=40.2
Q ss_pred HhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh-cCCCCCCCch
Q 013867 306 ELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL-KAPPLESEGV 362 (435)
Q Consensus 306 ~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~-k~~~~~hp~~ 362 (435)
..-|.+.|.-..+|.||-.=|..||+|+-| .++.+.||+-. +..|-+||++
T Consensus 130 ~~~~~E~~~rl~tL~nlv~q~~~q~r~eva------v~~~KqalEdl~~~~~~~~~~v 181 (181)
T PF09311_consen 130 QSQGYEIPARLRTLHNLVIQYESQGRYEVA------VPLCKQALEDLEKESGHKHPDV 181 (181)
T ss_dssp --S-TTS-HHHHHHHHHHHHHHHTT-HHHH------HHHHHHHHHHHHHHH-SSSHHH
T ss_pred HhccccchHHHHHHHHHHHHHHHHHHHHHH------hHHHHHHHHHHHHHhhhcccCC
Confidence 456779999999999999999999998755 89999999998 5679999975
No 263
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=85.41 E-value=2.6 Score=41.47 Aligned_cols=56 Identities=11% Similarity=0.004 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHh
Q 013867 82 YSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYES-GNYVEAIEKLQKVENF 137 (435)
Q Consensus 82 Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~q-Gky~eA~~l~~ral~i 137 (435)
-++|...|++|+++..+.+.+.||-......|.+..|++. ++-++|.++.++|++-
T Consensus 144 ~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~ 200 (244)
T smart00101 144 AENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDE 200 (244)
T ss_pred HHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4589999999999988889999999999999999997775 9999999999998653
No 264
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=84.26 E-value=1.1 Score=47.64 Aligned_cols=78 Identities=12% Similarity=0.106 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHH
Q 013867 240 KKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVL 319 (435)
Q Consensus 240 e~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L 319 (435)
..+--++|=|.+..+| +.|+... . .+.--|-+|.++|+|+.-..|.+-||.+..+.|-|-.|-|++++
T Consensus 315 d~~RmqaLiirerILg-psh~d~s--Y---------yir~rgavyad~g~~~rCi~LWkyAL~mqQk~l~PlspmT~ssl 382 (615)
T KOG0508|consen 315 DEMRMQALIIRERILG-PSHPDVS--Y---------YIRYRGAVYADSGEFERCIRLWKYALDMQQKNLEPLSPMTASSL 382 (615)
T ss_pred HHHHHHHHHHHHHHhC-CCCCCce--e---------EEEeeeeeecCCccHHHHHHHHHHHHHHHHhhcCCCCcccHHHH
Confidence 4567789999877666 3333322 0 12356889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 013867 320 TCLALMFRNK 329 (435)
Q Consensus 320 ~nLA~ly~~q 329 (435)
-..|.+++.+
T Consensus 383 lsFaelFS~m 392 (615)
T KOG0508|consen 383 LSFAELFSFM 392 (615)
T ss_pred HHHHHHHHHH
Confidence 9999998754
No 265
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=82.60 E-value=12 Score=37.24 Aligned_cols=104 Identities=17% Similarity=0.121 Sum_probs=70.9
Q ss_pred HHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHH-----HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013867 227 GEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALA-----ATFALGQLEAHMGNFGDAEEILTRTL 301 (435)
Q Consensus 227 a~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~-----~l~nLa~ly~~qG~y~eAe~l~~rAL 301 (435)
|+-+..+|+|.||..-|+.|+.+.+. +..... +|. |+=+.+. -+.|..+.+...|+|-|+++.-...|
T Consensus 185 GN~lfk~~~ykEA~~~YreAi~~l~~-L~lkEk--P~e----~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 185 GNRLFKLGRYKEASSKYREAIICLRN-LQLKEK--PGE----PEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hhhhhhhccHHHHHHHHHHHHHHHHH-HHhccC--CCC----hHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 44567899999999999999999764 221222 221 3322333 24689999999999999998887777
Q ss_pred HHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHH
Q 013867 302 TKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEF 351 (435)
Q Consensus 302 ~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I 351 (435)
. .||....+|...|.....-=+- .+|+.=+..+|+.
T Consensus 258 ~--------~~~~nvKA~frRakAhaa~Wn~------~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 258 R--------HHPGNVKAYFRRAKAHAAVWNE------AEAKADLQKVLEL 293 (329)
T ss_pred h--------cCCchHHHHHHHHHHHHhhcCH------HHHHHHHHHHHhc
Confidence 5 6888888777777665543332 3456667776664
No 266
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=82.20 E-value=5.8 Score=35.33 Aligned_cols=101 Identities=14% Similarity=0.139 Sum_probs=65.6
Q ss_pred HHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchH--HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 013867 226 YGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEE--VALAATFALGQLEAHMGNFGDAEEILTRTLTK 303 (435)
Q Consensus 226 la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~--~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I 303 (435)
+|......+++-.++-.|++||.+.++.-. ++ .... .|- +.+.+..|||.+|+.||+-+=...+++-|-+.
T Consensus 7 lAd~a~~~~~~l~si~hYQqAls~se~~~~-~~--~~el----~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~ 79 (140)
T PF10952_consen 7 LADQAFKEADPLRSILHYQQALSLSEEIDE-SN--EIEL----EDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEK 79 (140)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHHHHHhcc-cc--cccH----HHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHH
Confidence 345556788999999999999999775421 11 1110 111 23446679999999999999999988877654
Q ss_pred HHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 304 TEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 304 ~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
- -++=|.=|.+-- .+|..-.+..+.||=-+
T Consensus 80 V-ltLiPQCp~~~C------------------~afi~sLGCCk~ALl~F 109 (140)
T PF10952_consen 80 V-LTLIPQCPNTEC------------------EAFIDSLGCCKKALLDF 109 (140)
T ss_pred H-HHhccCCCCcch------------------HHHHHhhhccHHHHHHH
Confidence 3 334455554421 12444467777777555
No 267
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=80.69 E-value=3 Score=42.63 Aligned_cols=61 Identities=13% Similarity=0.185 Sum_probs=49.0
Q ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013867 223 ALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLT 302 (435)
Q Consensus 223 a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~ 302 (435)
+.+.|.-.+.+|+.++|..+|+.||+.. |+++ ..+..+|+....-.+.-+|..+|.|||.
T Consensus 119 Al~~A~~~~~~Gk~ekA~~lfeHAlala------------------P~~p--~~L~e~G~f~E~~~~iv~ADq~Y~~ALt 178 (472)
T KOG3824|consen 119 ALKAAGRSRKDGKLEKAMTLFEHALALA------------------PTNP--QILIEMGQFREMHNEIVEADQCYVKALT 178 (472)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHhcC------------------CCCH--HHHHHHhHHHHhhhhhHhhhhhhheeee
Confidence 3344545678999999999999999881 2222 4678899999888999999999999998
Q ss_pred H
Q 013867 303 K 303 (435)
Q Consensus 303 I 303 (435)
|
T Consensus 179 i 179 (472)
T KOG3824|consen 179 I 179 (472)
T ss_pred e
Confidence 8
No 268
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=80.45 E-value=13 Score=36.95 Aligned_cols=95 Identities=16% Similarity=0.085 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChh----------HHHHHHHHHHHHHHhhhhhhhhhhHHHHHHH
Q 013867 276 ATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPK----------VGVVLTCLALMFRNKAMQEHSSALLIQEGLY 345 (435)
Q Consensus 276 ~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~----------va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly 345 (435)
.+..-|+=+..+|+|.||+..|..|+.+-+..-=.+-|- .-..|-|.+..|-..|+|-++ .
T Consensus 180 ~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yev---------l 250 (329)
T KOG0545|consen 180 VLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEV---------L 250 (329)
T ss_pred HHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHH---------H
Confidence 455668888999999999999999999988877666664 345577888888888876333 4
Q ss_pred HHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHHHh
Q 013867 346 RRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEAL 383 (435)
Q Consensus 346 ~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yaeal 383 (435)
+-+-+|++ .||+..+.+.-+|-+..+-++-+||.
T Consensus 251 eh~seiL~----~~~~nvKA~frRakAhaa~Wn~~eA~ 284 (329)
T KOG0545|consen 251 EHCSEILR----HHPGNVKAYFRRAKAHAAVWNEAEAK 284 (329)
T ss_pred HHHHHHHh----cCCchHHHHHHHHHHHHhhcCHHHHH
Confidence 45556664 24665666766777766666666663
No 269
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.58 E-value=38 Score=32.50 Aligned_cols=91 Identities=20% Similarity=0.248 Sum_probs=63.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCC
Q 013867 278 FALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPL 357 (435)
Q Consensus 278 ~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~ 357 (435)
..+|..+.+.|+|++|+.-++++|.-.. |---.+.+--+||.|.-.+|++|+| |.+... +
T Consensus 93 L~lAk~~ve~~~~d~A~aqL~~~l~~t~-----De~lk~l~~lRLArvq~q~~k~D~A-------------L~~L~t--~ 152 (207)
T COG2976 93 LELAKAEVEANNLDKAEAQLKQALAQTK-----DENLKALAALRLARVQLQQKKADAA-------------LKTLDT--I 152 (207)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHccch-----hHHHHHHHHHHHHHHHHHhhhHHHH-------------HHHHhc--c
Confidence 4689999999999999999999984321 1222455667899999999997665 444432 2
Q ss_pred CCCc-hhhhhccHHHHHHHhcCHHHHhhHhhh
Q 013867 358 ESEG-VETKVDRTDIVALARGGYAEALSVQQN 388 (435)
Q Consensus 358 ~hp~-~a~~l~nla~~~~a~G~yaeal~~~~~ 388 (435)
..++ ++..-+-.+.++.++|+-.+|...+++
T Consensus 153 ~~~~w~~~~~elrGDill~kg~k~~Ar~ay~k 184 (207)
T COG2976 153 KEESWAAIVAELRGDILLAKGDKQEARAAYEK 184 (207)
T ss_pred ccccHHHHHHHHhhhHHHHcCchHHHHHHHHH
Confidence 2233 444445678888888888888776633
No 270
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=79.18 E-value=3.6 Score=42.63 Aligned_cols=64 Identities=11% Similarity=0.101 Sum_probs=54.1
Q ss_pred hcHHHHHHHHHHHHhccCc-----CCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHH
Q 013867 80 ESYSQGMLVLEQCLSTQPS-----DGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGV 144 (435)
Q Consensus 80 G~Y~eA~~~~eqaL~i~~~-----~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i 144 (435)
..|++++..|..++...-- .+ ..||.-..+|..++.++..||+++.|-++.+||+-+.++++-.
T Consensus 8 ~~Y~~~q~~F~~~v~~~Dp~~l~~ll-~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~ 76 (360)
T PF04910_consen 8 KAYQEAQEQFYAAVQSHDPNALINLL-QKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHP 76 (360)
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHH-HHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999875411 12 6789999999999999999999999999999999888877644
No 271
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=79.02 E-value=17 Score=29.31 Aligned_cols=53 Identities=9% Similarity=0.050 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHHHHH
Q 013867 276 ATFALGQLEAHMGNFGDAEEILTRTLTKTEELF-GSHHPKVGVVLTCLALMFRN 328 (435)
Q Consensus 276 ~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~l-G~~HP~va~~L~nLA~ly~~ 328 (435)
.+..-|.-+...|+|++|..+|.++++.....+ +...|..-.++..--.-|..
T Consensus 8 ~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~~lk~e~d~~~k~~~r~ki~eY~~ 61 (77)
T cd02683 8 EVLKRAVELDQEGRFQEALVCYQEGIDLLMQVLKGTKDEAKKKNLRQKISEYMD 61 (77)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH
Confidence 344566777889999999999999999999966 66667676666555555544
No 272
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=78.93 E-value=16 Score=29.55 Aligned_cols=31 Identities=19% Similarity=0.242 Sum_probs=24.0
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHH
Q 013867 286 HMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVL 319 (435)
Q Consensus 286 ~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L 319 (435)
..|+|++|.++|.+|++.+.. ...|..-.++
T Consensus 18 ~~gny~eA~~lY~~ale~~~~---ekn~~~k~~i 48 (75)
T cd02680 18 EKGNAEEAIELYTEAVELCIN---TSNETMDQAL 48 (75)
T ss_pred HhhhHHHHHHHHHHHHHHHHH---hcChhhHHHH
Confidence 459999999999999999887 4555554444
No 273
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=78.18 E-value=4.2 Score=41.55 Aligned_cols=60 Identities=12% Similarity=0.187 Sum_probs=45.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 279 ALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 279 nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
+.|.=...+||.++|..+|+.||+. .|+||++.+-+.- ...... .+.+|..+|-|||.|.
T Consensus 121 ~~A~~~~~~Gk~ekA~~lfeHAlal-----aP~~p~~L~e~G~---f~E~~~------~iv~ADq~Y~~ALtis 180 (472)
T KOG3824|consen 121 KAAGRSRKDGKLEKAMTLFEHALAL-----APTNPQILIEMGQ---FREMHN------EIVEADQCYVKALTIS 180 (472)
T ss_pred HHHHHHHhccchHHHHHHHHHHHhc-----CCCCHHHHHHHhH---HHHhhh------hhHhhhhhhheeeeeC
Confidence 4566677899999999999999974 6899987665433 333222 3677899999999986
No 274
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=77.24 E-value=6.4 Score=27.11 Aligned_cols=22 Identities=14% Similarity=0.140 Sum_probs=17.7
Q ss_pred HHHHHHHHHHhhchHHHHHHHH
Q 013867 223 ALSYGEYLHATRNFLLAKKFYQ 244 (435)
Q Consensus 223 a~~la~~~~~~G~y~eAe~ly~ 244 (435)
..++|..++.+|+|++|+.+|+
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~ 25 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQ 25 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHH
Confidence 4457888999999999999966
No 275
>PF12854 PPR_1: PPR repeat
Probab=76.95 E-value=4.3 Score=27.23 Aligned_cols=26 Identities=15% Similarity=0.166 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013867 108 GISLLAMSTLLYESGNYVEAIEKLQK 133 (435)
Q Consensus 108 A~~l~nLa~ly~~qGky~eA~~l~~r 133 (435)
..+++.|-..|.+.|+.++|+++|++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 46789999999999999999998875
No 276
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=76.60 E-value=15 Score=35.24 Aligned_cols=57 Identities=16% Similarity=0.198 Sum_probs=44.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHH
Q 013867 277 TFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLI 340 (435)
Q Consensus 277 l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~ 340 (435)
...||..|. .-+-++|..+|-++|+... +++.-=...+..||.+|..+|++++| |.+
T Consensus 144 q~aLAtyY~-krD~~Kt~~ll~~~L~l~~----~~~~~n~eil~sLas~~~~~~~~e~A--Yiw 200 (203)
T PF11207_consen 144 QYALATYYT-KRDPEKTIQLLLRALELSN----PDDNFNPEILKSLASIYQKLKNYEQA--YIW 200 (203)
T ss_pred HHHHHHHHH-ccCHHHHHHHHHHHHHhcC----CCCCCCHHHHHHHHHHHHHhcchhhh--hhh
Confidence 467887665 7889999999999998754 44222356678899999999999998 544
No 277
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=76.48 E-value=93 Score=31.67 Aligned_cols=57 Identities=18% Similarity=0.320 Sum_probs=48.3
Q ss_pred cHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhh
Q 013867 81 SYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSI 141 (435)
Q Consensus 81 ~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~ 141 (435)
+.++|+.-|++.|+.. |+.-.|--..+-.|-.+++.+|+|++-++.|++-+.-..++
T Consensus 42 ~p~~Al~sF~kVlelE----gEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSA 98 (440)
T KOG1464|consen 42 EPKEALSSFQKVLELE----GEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSA 98 (440)
T ss_pred CHHHHHHHHHHHHhcc----cccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence 7889999999999765 45567788889999999999999999999999987655444
No 278
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=76.46 E-value=12 Score=36.92 Aligned_cols=65 Identities=6% Similarity=0.004 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHH-HHhhhhhhhhhhHHHHHHHHHHHHHhcCCC
Q 013867 290 FGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMF-RNKAMQEHSSALLIQEGLYRRALEFLKAPP 356 (435)
Q Consensus 290 y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly-~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~ 356 (435)
-++|...|+.|++|..+.+.|-||--....-|.+..| .-.++.++| ...|..-|..|+.-+..+.
T Consensus 144 ~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A--~~lAk~afd~Ai~~ld~l~ 209 (244)
T smart00101 144 AENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRA--CNLAKQAFDEAIAELDTLG 209 (244)
T ss_pred HHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHH--HHHHHHHHHHHHHHhhccC
Confidence 3589999999999999999999999776666666665 556887887 4556667777766665443
No 279
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=75.94 E-value=9 Score=29.67 Aligned_cols=33 Identities=27% Similarity=0.403 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 013867 107 RGISLLAMSTLLYESGNYVEAIEKLQKVENFKN 139 (435)
Q Consensus 107 ~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e 139 (435)
-|..+.+.|.-+.+.|+|++|+++|.+++....
T Consensus 4 ~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~ 36 (69)
T PF04212_consen 4 KAIELIKKAVEADEAGNYEEALELYKEAIEYLM 36 (69)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 455667778888999999999999999866543
No 280
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=75.87 E-value=53 Score=32.41 Aligned_cols=22 Identities=23% Similarity=0.182 Sum_probs=18.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHH
Q 013867 278 FALGQLEAHMGNFGDAEEILTR 299 (435)
Q Consensus 278 ~nLa~ly~~qG~y~eAe~l~~r 299 (435)
.-+|..|.+.|+|.+|+.+|-.
T Consensus 94 ~~~a~~~~~e~~~~~A~~Hfl~ 115 (260)
T PF04190_consen 94 HLLAEKLWKEGNYYEAERHFLL 115 (260)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHT
T ss_pred HHHHHHHHhhccHHHHHHHHHh
Confidence 3689999999999999999854
No 281
>cd09034 BRO1_Alix_like Protein-interacting Bro1-like domain of mammalian Alix and related domains. This superfamily includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1 and Rim20 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to
Probab=75.78 E-value=61 Score=32.83 Aligned_cols=79 Identities=18% Similarity=0.147 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHcC----------CHHHHHHHHHHHHHHHHHhh------------CCCChhHHHHHHHHHHHHHHhhhhh
Q 013867 276 ATFALGQLEAHMG----------NFGDAEEILTRTLTKTEELF------------GSHHPKVGVVLTCLALMFRNKAMQE 333 (435)
Q Consensus 276 ~l~nLa~ly~~qG----------~y~eAe~l~~rAL~I~e~~l------------G~~HP~va~~L~nLA~ly~~qG~~e 333 (435)
.+.|+|.+|..+| ...+|-.+|++|-.+++-+. .+=+|.+..+|.++.....+.--++
T Consensus 113 vLfn~aa~~s~~a~~~~~~~~~~~~k~A~~~fq~AAG~F~~l~~~~~~~~~~~~~~Dl~~~~l~~l~~l~LAqAQe~~~~ 192 (345)
T cd09034 113 ILFNLAALASQLANEKLITGSEEDLKQAIKSLQKAAGYFEYLKEHVLPLPPDELPVDLTEAVLSALSLIMLAQAQECFLL 192 (345)
T ss_pred HHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666654443 36677888888887766543 3445668888888887776665555
Q ss_pred hhhhh------------HHHHHHHHHHHHHhcC
Q 013867 334 HSSAL------------LIQEGLYRRALEFLKA 354 (435)
Q Consensus 334 ~A~~~------------~~Ae~Ly~rAL~I~k~ 354 (435)
+|..- .++-.+|+.|+.....
T Consensus 193 ka~~~~~~~~~liakLa~~~~~~y~~A~~~l~~ 225 (345)
T cd09034 193 KAEEDKKAKLSLLARLACEAAKYYEEALKCLSG 225 (345)
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 55322 2677889999998864
No 282
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=75.76 E-value=4 Score=43.97 Aligned_cols=78 Identities=10% Similarity=0.119 Sum_probs=55.5
Q ss_pred HHHHHHHHHhhchHHHHHHHHHHHH-HHHH-hcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013867 224 LSYGEYLHATRNFLLAKKFYQKVIE-VLAE-QKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTL 301 (435)
Q Consensus 224 ~~la~~~~~~G~y~eAe~ly~rAL~-I~~~-~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL 301 (435)
+|+|.+....|.|.-+.-+|++||. .... ..|+++.+... + ...-+.-.++|.|.+|.+.||--.|-++|.+|.
T Consensus 287 NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~t---l-s~nks~eilYNcG~~~Lh~grPl~AfqCf~~av 362 (696)
T KOG2471|consen 287 NNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFT---L-SQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAV 362 (696)
T ss_pred cCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCccee---h-hcccchhhHHhhhHHHHhcCCcHHHHHHHHHHH
Confidence 6788888999999999999999996 3222 22222222221 1 000122357899999999999999999999998
Q ss_pred HHHH
Q 013867 302 TKTE 305 (435)
Q Consensus 302 ~I~e 305 (435)
..+-
T Consensus 363 ~vfh 366 (696)
T KOG2471|consen 363 HVFH 366 (696)
T ss_pred HHHh
Confidence 8764
No 283
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=75.35 E-value=5.7 Score=29.81 Aligned_cols=28 Identities=14% Similarity=0.182 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 013867 276 ATFALGQLEAHMGNFGDAEEILTRTLTK 303 (435)
Q Consensus 276 ~l~nLa~ly~~qG~y~eAe~l~~rAL~I 303 (435)
++..||..+.++|+|++|..+.+++|++
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~ 30 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEI 30 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 4678999999999999999999999997
No 284
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=75.33 E-value=15 Score=28.39 Aligned_cols=53 Identities=13% Similarity=0.161 Sum_probs=39.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCC-ChhHHHHHHHHHHHHHHh
Q 013867 277 TFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSH-HPKVGVVLTCLALMFRNK 329 (435)
Q Consensus 277 l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~-HP~va~~L~nLA~ly~~q 329 (435)
+.+-|.-+...|+|++|..+|++|+......+..+ .|..-..+..-..-|..+
T Consensus 8 ~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~~~~~~~~~~~l~~k~~~yl~R 61 (69)
T PF04212_consen 8 LIKKAVEADEAGNYEEALELYKEAIEYLMQALKSESNPERRQALRQKMKEYLER 61 (69)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 44667777789999999999999999999887754 555555555555555443
No 285
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.84 E-value=50 Score=34.45 Aligned_cols=99 Identities=16% Similarity=0.105 Sum_probs=64.2
Q ss_pred cchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 013867 217 GCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEI 296 (435)
Q Consensus 217 ~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l 296 (435)
||..-+---|+-.+...|-|++||..-.|||+| ..- ...+...++-++.-.|++.|+.++
T Consensus 172 p~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqi---N~~-----------------D~Wa~Ha~aHVlem~~r~Keg~eF 231 (491)
T KOG2610|consen 172 PCYSYVHGMYAFGLEECGIYDDAEKQADRALQI---NRF-----------------DCWASHAKAHVLEMNGRHKEGKEF 231 (491)
T ss_pred cHHHHHHHHHHhhHHHhccchhHHHHHHhhccC---CCc-----------------chHHHHHHHHHHHhcchhhhHHHH
Confidence 454333333555567899999999999999999 221 113456788899999999999998
Q ss_pred HHHHHHHHHHhhCCCChhHHHH--HHHHHHHHHHhhhhhhhhhhHHHHHHHHH
Q 013867 297 LTRTLTKTEELFGSHHPKVGVV--LTCLALMFRNKAMQEHSSALLIQEGLYRR 347 (435)
Q Consensus 297 ~~rAL~I~e~~lG~~HP~va~~--L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~r 347 (435)
..+.=.-+.. .....+ +-..|..|-..+.|+.| +..|.|
T Consensus 232 M~~ted~Wr~------s~mlasHNyWH~Al~~iE~aeye~a------leIyD~ 272 (491)
T KOG2610|consen 232 MYKTEDDWRQ------SWMLASHNYWHTALFHIEGAEYEKA------LEIYDR 272 (491)
T ss_pred HHhcccchhh------hhHHHhhhhHHHHHhhhcccchhHH------HHHHHH
Confidence 8765444331 122223 33456666666665544 566665
No 286
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=74.56 E-value=26 Score=27.76 Aligned_cols=50 Identities=14% Similarity=0.165 Sum_probs=36.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHHHHH
Q 013867 279 ALGQLEAHMGNFGDAEEILTRTLTKTEELF-GSHHPKVGVVLTCLALMFRN 328 (435)
Q Consensus 279 nLa~ly~~qG~y~eAe~l~~rAL~I~e~~l-G~~HP~va~~L~nLA~ly~~ 328 (435)
.-|.-....|+|++|..+|.+|++...... .+..|.....+..-..=|..
T Consensus 11 ~~Av~~D~~g~y~eA~~~Y~~aie~l~~~~k~e~~~~~k~~~~~k~~eyl~ 61 (75)
T cd02678 11 KKAIEEDNAGNYEEALRLYQHALEYFMHALKYEKNPKSKESIRAKCTEYLD 61 (75)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH
Confidence 334445567999999999999999999977 55566666666555544443
No 287
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=74.28 E-value=9.3 Score=26.30 Aligned_cols=22 Identities=14% Similarity=0.247 Sum_probs=18.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHH
Q 013867 277 TFALGQLEAHMGNFGDAEEILT 298 (435)
Q Consensus 277 l~nLa~ly~~qG~y~eAe~l~~ 298 (435)
+..+|-.+..+|+|++|+.+|.
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~ 25 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQ 25 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHH
Confidence 5678999999999999999955
No 288
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=74.12 E-value=5.1 Score=28.94 Aligned_cols=25 Identities=24% Similarity=0.454 Sum_probs=22.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 013867 278 FALGQLEAHMGNFGDAEEILTRTLT 302 (435)
Q Consensus 278 ~nLa~ly~~qG~y~eAe~l~~rAL~ 302 (435)
.+||..|..+|+++.|..++++.+.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4799999999999999999999884
No 289
>PF12854 PPR_1: PPR repeat
Probab=73.90 E-value=5.1 Score=26.86 Aligned_cols=25 Identities=16% Similarity=0.097 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH
Q 013867 275 AATFALGQLEAHMGNFGDAEEILTR 299 (435)
Q Consensus 275 ~~l~nLa~ly~~qG~y~eAe~l~~r 299 (435)
.+++-|=..|.+.|+.++|..+|.+
T Consensus 8 ~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 8 VTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 4567788889999999999999875
No 290
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=73.81 E-value=11 Score=39.10 Aligned_cols=61 Identities=16% Similarity=0.194 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhh
Q 013867 274 LAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEH 334 (435)
Q Consensus 274 l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~ 334 (435)
+..+...|+-...+++|++|-.-|.+|..+..+.||.+|-++...|+--|..+-.-++.+.
T Consensus 41 ~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~ 101 (400)
T KOG4563|consen 41 LEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEES 101 (400)
T ss_pred HHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677888899999999999999999999999999999999999999999988888653
No 291
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.69 E-value=58 Score=32.99 Aligned_cols=136 Identities=18% Similarity=0.198 Sum_probs=97.7
Q ss_pred cchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 013867 217 GCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEI 296 (435)
Q Consensus 217 ~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l 296 (435)
...+.+.+.++.+++-.|.|.-...+|.+.++- . + |.++ +-+..||.+-..-|+-+-|+.+
T Consensus 174 KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~-----~---~---------e~~p--~L~s~Lgr~~MQ~GD~k~a~~y 234 (366)
T KOG2796|consen 174 KRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKY-----Y---P---------EQEP--QLLSGLGRISMQIGDIKTAEKY 234 (366)
T ss_pred HHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHh-----C---C---------cccH--HHHHHHHHHHHhcccHHHHHHH
Confidence 345678888999999999999999999998873 1 0 1111 2245799999999999999999
Q ss_pred HHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHh
Q 013867 297 LTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALAR 376 (435)
Q Consensus 297 ~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~ 376 (435)
|++.=....+.-|- ..--+++-|.|.+|--+.+|..| -..|.+++ ...|.++...||-|++.+-.
T Consensus 235 f~~vek~~~kL~~~--q~~~~V~~n~a~i~lg~nn~a~a------~r~~~~i~-------~~D~~~~~a~NnKALcllYl 299 (366)
T KOG2796|consen 235 FQDVEKVTQKLDGL--QGKIMVLMNSAFLHLGQNNFAEA------HRFFTEIL-------RMDPRNAVANNNKALCLLYL 299 (366)
T ss_pred HHHHHHHHhhhhcc--chhHHHHhhhhhheecccchHHH------HHHHhhcc-------ccCCCchhhhchHHHHHHHH
Confidence 99876444443332 22345678899999988887555 33333322 23355677889999999999
Q ss_pred cCHHHHhhHh
Q 013867 377 GGYAEALSVQ 386 (435)
Q Consensus 377 G~yaeal~~~ 386 (435)
|+...|+...
T Consensus 300 g~l~DAiK~~ 309 (366)
T KOG2796|consen 300 GKLKDALKQL 309 (366)
T ss_pred HHHHHHHHHH
Confidence 9999987765
No 292
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=73.61 E-value=5.3 Score=38.55 Aligned_cols=46 Identities=9% Similarity=0.065 Sum_probs=39.6
Q ss_pred HHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 013867 85 GMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFK 138 (435)
Q Consensus 85 A~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~ 138 (435)
|+.+|.+|..+. |+.+..+|.||.++..+|++-+|+=.|-|++...
T Consensus 1 A~~~Y~~A~~l~--------P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~ 46 (278)
T PF10373_consen 1 AERYYRKAIRLL--------PSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVR 46 (278)
T ss_dssp HHHHHHHHHHH---------TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSS
T ss_pred CHHHHHHHHHhC--------CCCCCcccchhhhhccccchHHHHHHHHHHHhcC
Confidence 678999999776 7889999999999999999999999999997554
No 293
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=73.24 E-value=34 Score=34.00 Aligned_cols=90 Identities=10% Similarity=0.075 Sum_probs=65.6
Q ss_pred hhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Q 013867 79 DESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQ 158 (435)
Q Consensus 79 ~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~ 158 (435)
.-+|+.|+..|-+++.+. |.++.-+.|-+..|.+.-+|+..++-.++++++....+. ..--|+...++
T Consensus 23 ~k~y~~ai~~y~raI~~n--------P~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk----~h~flg~~~l~ 90 (284)
T KOG4642|consen 23 PKRYDDAIDCYSRAICIN--------PTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVK----AHYFLGQWLLQ 90 (284)
T ss_pred hhhhchHHHHHHHHHhcC--------CCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHH----HHHHHHHHHHh
Confidence 347999999999999765 778899999999999999999999999999887654422 11112222345
Q ss_pred cCCCcchHHHHHHHHHHHHhcC
Q 013867 159 LGQDDTSSVVADKCLQLCEKHK 180 (435)
Q Consensus 159 ~g~~~~A~~~~~~~~~l~~~~~ 180 (435)
.+.++.+....++...++..+-
T Consensus 91 s~~~~eaI~~Lqra~sl~r~~~ 112 (284)
T KOG4642|consen 91 SKGYDEAIKVLQRAYSLLREQP 112 (284)
T ss_pred hccccHHHHHHHHHHHHHhcCC
Confidence 6667777766666666665444
No 294
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=73.13 E-value=1.5e+02 Score=32.45 Aligned_cols=188 Identities=18% Similarity=0.209 Sum_probs=106.1
Q ss_pred cCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHH------HHHHH
Q 013867 76 QKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGV------RVAAM 149 (435)
Q Consensus 76 ~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i------~vaal 149 (435)
..||..+++|-+++|+||..... +| +....-+..-.+.-....|.-++-||.++..+.-.. ....+
T Consensus 83 Eesq~e~~RARSv~ERALdvd~r----~i----tLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~L 154 (677)
T KOG1915|consen 83 EESQKEIQRARSVFERALDVDYR----NI----TLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEML 154 (677)
T ss_pred HHhHHHHHHHHHHHHHHHhcccc----cc----hHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHh
Confidence 36889999999999999965532 22 222334445555556667777777777766655332 12245
Q ss_pred HHHHHH------HHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHH
Q 013867 150 EALAGL------YLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAA 223 (435)
Q Consensus 150 e~L~g~------~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a 223 (435)
+|+.|. .+.-.|+..|- +..++.-. .|. . -.++..|... .---|| .+ ..-
T Consensus 155 gNi~gaRqiferW~~w~P~eqaW---~sfI~fEl-----Ryk---e-ieraR~IYer---fV~~HP--------~v-~~w 210 (677)
T KOG1915|consen 155 GNIAGARQIFERWMEWEPDEQAW---LSFIKFEL-----RYK---E-IERARSIYER---FVLVHP--------KV-SNW 210 (677)
T ss_pred cccHHHHHHHHHHHcCCCcHHHH---HHHHHHHH-----Hhh---H-HHHHHHHHHH---Hheecc--------cH-HHH
Confidence 555443 33334443221 11111111 121 1 1344444432 112233 22 233
Q ss_pred HHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--
Q 013867 224 LSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTL-- 301 (435)
Q Consensus 224 ~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL-- 301 (435)
..+|.+-...|+..-|-..|++|++-+-. |+..-.-++..|..-..|..|+.|.-+|+=||
T Consensus 211 ikyarFE~k~g~~~~aR~VyerAie~~~~-----------------d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~ 273 (677)
T KOG1915|consen 211 IKYARFEEKHGNVALARSVYERAIEFLGD-----------------DEEAEILFVAFAEFEERQKEYERARFIYKYALDH 273 (677)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHhhh-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45788888899999999999999987411 11111123567777777888888877776555
Q ss_pred -------------HHHHHhhCCCC
Q 013867 302 -------------TKTEELFGSHH 312 (435)
Q Consensus 302 -------------~I~e~~lG~~H 312 (435)
...|+-||+.-
T Consensus 274 ~pk~raeeL~k~~~~fEKqfGd~~ 297 (677)
T KOG1915|consen 274 IPKGRAEELYKKYTAFEKQFGDKE 297 (677)
T ss_pred cCcccHHHHHHHHHHHHHHhcchh
Confidence 35677788643
No 295
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=72.79 E-value=17 Score=34.89 Aligned_cols=78 Identities=17% Similarity=0.111 Sum_probs=58.4
Q ss_pred HHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhc
Q 013867 298 TRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARG 377 (435)
Q Consensus 298 ~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G 377 (435)
+.|+..+.+.-|..--+++....-||..|... +-+ ++..||-++|+....-..-.|++. -.|+.++..+|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~kr-D~~------Kt~~ll~~~L~l~~~~~~~n~eil---~sLas~~~~~~ 192 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYTKR-DPE------KTIQLLLRALELSNPDDNFNPEIL---KSLASIYQKLK 192 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHcc-CHH------HHHHHHHHHHHhcCCCCCCCHHHH---HHHHHHHHHhc
Confidence 35777777888888889999999999999854 334 458999999999953212234444 44678899999
Q ss_pred CHHHHhhH
Q 013867 378 GYAEALSV 385 (435)
Q Consensus 378 ~yaeal~~ 385 (435)
+|++|-.+
T Consensus 193 ~~e~AYiw 200 (203)
T PF11207_consen 193 NYEQAYIW 200 (203)
T ss_pred chhhhhhh
Confidence 99988543
No 296
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=72.15 E-value=37 Score=33.62 Aligned_cols=105 Identities=10% Similarity=0.155 Sum_probs=65.7
Q ss_pred cchhHHHHHHHHH-HHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHH
Q 013867 217 GCTGSAALSYGEY-LHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEE 295 (435)
Q Consensus 217 ~~~~~~a~~la~~-~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~ 295 (435)
.+...+...+|.+ |+..++.+.|..+|++++..+- .. ..-+......+...|+.++|..
T Consensus 32 ~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~------~~--------------~~~~~~Y~~~l~~~~d~~~aR~ 91 (280)
T PF05843_consen 32 RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFP------SD--------------PDFWLEYLDFLIKLNDINNARA 91 (280)
T ss_dssp CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHT------T---------------HHHHHHHHHHHHHTT-HHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC------CC--------------HHHHHHHHHHHHHhCcHHHHHH
Confidence 3445667777877 4556777779999999998741 11 0112333455678999999999
Q ss_pred HHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 296 ILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 296 l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
+|+|++.. ++++. ..-....-....=...|+.+.. ..+++|+.+++
T Consensus 92 lfer~i~~----l~~~~-~~~~iw~~~i~fE~~~Gdl~~v------~~v~~R~~~~~ 137 (280)
T PF05843_consen 92 LFERAISS----LPKEK-QSKKIWKKFIEFESKYGDLESV------RKVEKRAEELF 137 (280)
T ss_dssp HHHHHCCT----SSCHH-HCHHHHHHHHHHHHHHS-HHHH------HHHHHHHHHHT
T ss_pred HHHHHHHh----cCchh-HHHHHHHHHHHHHHHcCCHHHH------HHHHHHHHHHh
Confidence 99999875 22221 1334455555555666665544 67888888887
No 297
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.46 E-value=35 Score=37.96 Aligned_cols=81 Identities=23% Similarity=0.247 Sum_probs=50.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCC
Q 013867 278 FALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPL 357 (435)
Q Consensus 278 ~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~ 357 (435)
-.||.+..+.|++.-|.+++.+|... ..|=.+|..-|+. ++|-.-+-.-.+
T Consensus 670 ~~Lg~~al~~~~l~lA~EC~~~a~d~----------------~~LlLl~t~~g~~---------~~l~~la~~~~~---- 720 (794)
T KOG0276|consen 670 RQLGDAALSAGELPLASECFLRARDL----------------GSLLLLYTSSGNA---------EGLAVLASLAKK---- 720 (794)
T ss_pred HHHHHHHhhcccchhHHHHHHhhcch----------------hhhhhhhhhcCCh---------hHHHHHHHHHHh----
Confidence 46888888999999999999988653 3444556666652 233222221111
Q ss_pred CCCchhhhhccHHH-HHHHhcCHHHHhhHh--hhhhhHH
Q 013867 358 ESEGVETKVDRTDI-VALARGGYAEALSVQ--QNRKDEG 393 (435)
Q Consensus 358 ~hp~~a~~l~nla~-~~~a~G~yaeal~~~--~~r~~ea 393 (435)
..-+|+|. +|..+|+|++.+.+- .+|.-||
T Consensus 721 ------~g~~N~AF~~~~l~g~~~~C~~lLi~t~r~peA 753 (794)
T KOG0276|consen 721 ------QGKNNLAFLAYFLSGDYEECLELLISTQRLPEA 753 (794)
T ss_pred ------hcccchHHHHHHHcCCHHHHHHHHHhcCcCcHH
Confidence 12334443 456889999887753 6778886
No 298
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=71.00 E-value=41 Score=27.11 Aligned_cols=43 Identities=9% Similarity=0.000 Sum_probs=32.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHH--hhCCCChhHHHHH
Q 013867 277 TFALGQLEAHMGNFGDAEEILTRTLTKTEE--LFGSHHPKVGVVL 319 (435)
Q Consensus 277 l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~--~lG~~HP~va~~L 319 (435)
+.-.|.-+...|+|+||..+|+.|++..-. .++...|..-..+
T Consensus 9 ~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~~~~~~~~n~~~k~~i 53 (76)
T cd02681 9 FARLAVQRDQEGRYSEAVFYYKEAAQLLIYAEMAGTLNDSHLKTI 53 (76)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 445677778899999999999999999988 4554555544433
No 299
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=69.43 E-value=37 Score=27.17 Aligned_cols=49 Identities=10% Similarity=0.020 Sum_probs=36.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHHHHH
Q 013867 280 LGQLEAHMGNFGDAEEILTRTLTKTEELF-GSHHPKVGVVLTCLALMFRN 328 (435)
Q Consensus 280 La~ly~~qG~y~eAe~l~~rAL~I~e~~l-G~~HP~va~~L~nLA~ly~~ 328 (435)
-|.-....|+|++|..+|.++|+.+...+ .+..|..-..+..-..=|..
T Consensus 12 ~Av~~D~~g~y~eA~~lY~~ale~~~~~~k~e~~~~~k~~lr~k~~eyl~ 61 (75)
T cd02684 12 QAVKKDQRGDAAAALSLYCSALQYFVPALHYETDAQRKEALRQKVLQYVS 61 (75)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH
Confidence 34444557999999999999999999966 77777776666655544443
No 300
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=68.92 E-value=30 Score=39.13 Aligned_cols=93 Identities=23% Similarity=0.280 Sum_probs=0.0
Q ss_pred hchHHHHHHHH-------------------HHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHH
Q 013867 234 RNFLLAKKFYQ-------------------KVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAE 294 (435)
Q Consensus 234 G~y~eAe~ly~-------------------rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe 294 (435)
|+|+|||.+|. |+++.+ +-|.++..+-+ .-.+.+|+|..+..+-+|.+|.
T Consensus 748 g~feeaek~yld~drrDLAielr~klgDwfrV~qL~--r~g~~d~dD~~---------~e~A~r~ig~~fa~~~~We~A~ 816 (1189)
T KOG2041|consen 748 GEFEEAEKLYLDADRRDLAIELRKKLGDWFRVYQLI--RNGGSDDDDEG---------KEDAFRNIGETFAEMMEWEEAA 816 (1189)
T ss_pred cchhHhhhhhhccchhhhhHHHHHhhhhHHHHHHHH--HccCCCcchHH---------HHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHH------------------HHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHH
Q 013867 295 EILTRT------------------LTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRR 347 (435)
Q Consensus 295 ~l~~rA------------------L~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~r 347 (435)
++|.++ |+..-+.+-++|| .|--||.++.+.|-.++| ...|-|
T Consensus 817 ~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~----llp~~a~mf~svGMC~qA------V~a~Lr 877 (1189)
T KOG2041|consen 817 KYYSYCGDTENQIECLYRLELFGELEVLARTLPEDSE----LLPVMADMFTSVGMCDQA------VEAYLR 877 (1189)
T ss_pred HHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccc----hHHHHHHHHHhhchHHHH------HHHHHh
No 301
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=67.34 E-value=59 Score=31.61 Aligned_cols=53 Identities=19% Similarity=0.232 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013867 82 YSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVEN 136 (435)
Q Consensus 82 Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~ 136 (435)
-...++++++|.+...+... +-.+......||..|...|+|++|..+|+.+..
T Consensus 154 s~~iI~lL~~A~~~f~~~~~--~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~ 206 (247)
T PF11817_consen 154 SKLIIELLEKAYEQFKKYGQ--NRMASYLSLEMAEEYFRLGDYDKALKLLEPAAS 206 (247)
T ss_pred HHHHHHHHHHHHHHHHHhcc--chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34667888888777665432 335666677999999999999999999999843
No 302
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=66.98 E-value=38 Score=33.54 Aligned_cols=94 Identities=20% Similarity=0.241 Sum_probs=59.7
Q ss_pred HHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHH
Q 013867 225 SYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAH-MGNFGDAEEILTRTLTK 303 (435)
Q Consensus 225 ~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~-qG~y~eAe~l~~rAL~I 303 (435)
.|..+....+..+.|-..|++|+.- . ... -| .+...|.+... .++.+.|..+|+++|..
T Consensus 6 ~~m~~~~r~~g~~~aR~vF~~a~~~----~------~~~------~~----vy~~~A~~E~~~~~d~~~A~~Ife~glk~ 65 (280)
T PF05843_consen 6 QYMRFMRRTEGIEAARKVFKRARKD----K------RCT------YH----VYVAYALMEYYCNKDPKRARKIFERGLKK 65 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCC----C------CS-------TH----HHHHHHHHHHHTCS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCChHHHHHHHHHHHcC----C------CCC------HH----HHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 3445666667799999999999721 1 111 11 24466888555 67777799999999954
Q ss_pred HHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 304 TEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 304 ~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
|+. .+++-..+. ..+...++.+.+ ..+|+|++...
T Consensus 66 ----f~~-~~~~~~~Y~---~~l~~~~d~~~a------R~lfer~i~~l 100 (280)
T PF05843_consen 66 ----FPS-DPDFWLEYL---DFLIKLNDINNA------RALFERAISSL 100 (280)
T ss_dssp ----HTT--HHHHHHHH---HHHHHTT-HHHH------HHHHHHHCCTS
T ss_pred ----CCC-CHHHHHHHH---HHHHHhCcHHHH------HHHHHHHHHhc
Confidence 444 344433333 455667876655 89999998764
No 303
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=66.69 E-value=9.8 Score=39.98 Aligned_cols=54 Identities=24% Similarity=0.359 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHhhCCCChh----HHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhc
Q 013867 292 DAEEILTRTLTKTEELFGSHHPK----VGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLK 353 (435)
Q Consensus 292 eAe~l~~rAL~I~e~~lG~~HP~----va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k 353 (435)
.|..+.++|+.-.++.--.+.|+ ||.++..||.+|....+ +++.+|++|-+|++
T Consensus 329 ~a~~l~~~Al~yL~kA~d~ddPetWv~vAEa~I~LGNL~d~eS~--------eQe~~Y~eAE~iL~ 386 (404)
T PF12753_consen 329 IAQELIKKALEYLKKAQDEDDPETWVDVAEAMIDLGNLYDNESK--------EQEKAYKEAEKILK 386 (404)
T ss_dssp THHHHHHHHHHHHHHHHHS--TTHHHHHHHHHHHHHHH-SSHHH---------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccCChhHHHHHHHHHhhhhcccccchH--------HHHHHHHHHHHHHH
Confidence 47889999999999999999998 68889999999976654 55788888888884
No 304
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=66.62 E-value=12 Score=31.00 Aligned_cols=57 Identities=9% Similarity=-0.041 Sum_probs=35.8
Q ss_pred ChHHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCc---------------CCCCCcchHHHHHHHHHHHH
Q 013867 58 SNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPS---------------DGQLAESWRGISLLAMSTLL 118 (435)
Q Consensus 58 ~~~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~---------------~lG~~Hp~~A~~l~nLa~ly 118 (435)
.|........+|..+. ..|+|++|+..+-..+..... .+|+.||-|...--.|+.++
T Consensus 18 ~P~D~~ar~~lA~~~~----~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL~~lL 89 (90)
T PF14561_consen 18 NPDDLDARYALADALL----AAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKLASLL 89 (90)
T ss_dssp STT-HHHHHHHHHHHH----HTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH----HCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHh
Confidence 4455566777787774 368999999999888876533 34566666666666666554
No 305
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=66.27 E-value=1.8e+02 Score=30.62 Aligned_cols=54 Identities=13% Similarity=0.049 Sum_probs=33.6
Q ss_pred cHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013867 81 SYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKV 134 (435)
Q Consensus 81 ~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ra 134 (435)
.|..|..-+.+.|.-.++.++.-.--.+.++.||=..|++--+|+.=+.+.+..
T Consensus 114 ~~~g~~~~l~~~L~~i~~rLd~~~~ls~div~~lllSyRdiqdydamI~Lve~l 167 (374)
T PF13281_consen 114 RYSGARKELAKELRRIRQRLDDPELLSPDIVINLLLSYRDIQDYDAMIKLVETL 167 (374)
T ss_pred HHhhHHHHHHHHHHHHHHhhCCHhhcChhHHHHHHHHhhhhhhHHHHHHHHHHh
Confidence 444444555556655555555333344445667777799999999888777654
No 306
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=66.08 E-value=1.4e+02 Score=29.43 Aligned_cols=105 Identities=15% Similarity=0.089 Sum_probs=64.6
Q ss_pred hhHHHHHHHHHHHHhhchHHHHHHHHHHHH-HHHHhcccCCCCCc-----------cccc--ccchHHHHHHHHHHHHHH
Q 013867 219 TGSAALSYGEYLHATRNFLLAKKFYQKVIE-VLAEQKDFSDMNTL-----------GSCN--MALEEVALAATFALGQLE 284 (435)
Q Consensus 219 ~~~~a~~la~~~~~~G~y~eAe~ly~rAL~-I~~~~~~~~~~~~l-----------~~~~--~~~~~~~l~~l~nLa~ly 284 (435)
.+.+....+.+++.+|+-.+|....+..+. -..+.........+ ...+ .........++.-+|...
T Consensus 183 ~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~ 262 (352)
T PF02259_consen 183 LPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWL 262 (352)
T ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHH
Confidence 456777789999999999999999999888 32221100000000 0000 001112223445667766
Q ss_pred HHc------CCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhh
Q 013867 285 AHM------GNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAM 331 (435)
Q Consensus 285 ~~q------G~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~ 331 (435)
..+ ++++++...|.+|..+ +|.....+.++|..+...=.
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~a~~~--------~~~~~k~~~~~a~~~~~~~~ 307 (352)
T PF02259_consen 263 DELYSKLSSESSDEILKYYKEATKL--------DPSWEKAWHSWALFNDKLLE 307 (352)
T ss_pred HhhccccccccHHHHHHHHHHHHHh--------ChhHHHHHHHHHHHHHHHHH
Confidence 666 8888888888888776 66666778888877766543
No 307
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=66.01 E-value=7.8 Score=24.12 Aligned_cols=25 Identities=16% Similarity=0.320 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Q 013867 110 SLLAMSTLLYESGNYVEAIEKLQKV 134 (435)
Q Consensus 110 ~l~nLa~ly~~qGky~eA~~l~~ra 134 (435)
+++.|=..|.+.|++++|+++|++-
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M 26 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEM 26 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHH
Confidence 5788899999999999999999874
No 308
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=65.73 E-value=6.3 Score=42.54 Aligned_cols=109 Identities=13% Similarity=0.168 Sum_probs=73.5
Q ss_pred HHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 013867 227 GEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAAT--FALGQLEAHMGNFGDAEEILTRTLTKT 304 (435)
Q Consensus 227 a~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l--~nLa~ly~~qG~y~eAe~l~~rAL~I~ 304 (435)
..+++..|+|.+|..+..+. .|. + ..|- ..+|+- ..++ ||||.++..+|+|.-+..+|.+||.-.
T Consensus 247 sq~eY~~gn~~kA~KlL~~s-ni~---~------~~g~-~~T~q~--~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~ 313 (696)
T KOG2471|consen 247 SQLEYAHGNHPKAMKLLLVS-NIH---K------EAGG-TITPQL--SSCIFNNNLGCIHYQLGCYQASSVLFLKALRNS 313 (696)
T ss_pred HHHHHHhcchHHHHHHHHhc-ccc---c------ccCc-cccchh--hhheeecCcceEeeehhhHHHHHHHHHHHHHHH
Confidence 45788899999998886543 231 1 1110 112221 1232 799999999999999999999999633
Q ss_pred HHhhCCC-Chh---------HHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcC
Q 013867 305 EELFGSH-HPK---------VGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKA 354 (435)
Q Consensus 305 e~~lG~~-HP~---------va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~ 354 (435)
-..+-.. -|. --..+.|.|.+|-.-||--. |-..|..|...+..
T Consensus 314 c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~------AfqCf~~av~vfh~ 367 (696)
T KOG2471|consen 314 CSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLL------AFQCFQKAVHVFHR 367 (696)
T ss_pred HHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHH------HHHHHHHHHHHHhc
Confidence 2222222 222 23568999999999999644 47888888888854
No 309
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=65.47 E-value=54 Score=25.67 Aligned_cols=50 Identities=12% Similarity=0.130 Sum_probs=35.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCC-ChhHHHHHHHHHHHHHH
Q 013867 279 ALGQLEAHMGNFGDAEEILTRTLTKTEELFGSH-HPKVGVVLTCLALMFRN 328 (435)
Q Consensus 279 nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~-HP~va~~L~nLA~ly~~ 328 (435)
.-|.-+...|+|++|..+|.+|++...+.+--+ .|..-..+..-+.-|..
T Consensus 13 ~~Av~~d~~g~~~eAl~~Y~~a~e~l~~~~~~~~~~~~~~~~~~k~~eyl~ 63 (77)
T smart00745 13 SKALKADEAGDYEEALELYKKAIEYLLEGIKVESDSKRREAVKAKAAEYLD 63 (77)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 445556668999999999999999999977544 34445555555444443
No 310
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=65.29 E-value=45 Score=26.14 Aligned_cols=51 Identities=18% Similarity=0.223 Sum_probs=35.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCC-ChhHHHHHHHHHHHHHH
Q 013867 278 FALGQLEAHMGNFGDAEEILTRTLTKTEELFGSH-HPKVGVVLTCLALMFRN 328 (435)
Q Consensus 278 ~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~-HP~va~~L~nLA~ly~~ 328 (435)
..-|.-....|+|++|..+|.+|++......-.+ .|..-..+..-..-|..
T Consensus 10 ~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~~~~~~~~~~~k~~l~~k~~~yl~ 61 (75)
T cd02656 10 IKQAVKEDEDGNYEEALELYKEALDYLLQALKAEKEPKLRKLLRKKVKEYLD 61 (75)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 3455666677999999999999999999987433 34554555544444443
No 311
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=64.82 E-value=16 Score=29.47 Aligned_cols=32 Identities=16% Similarity=0.064 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 013867 107 RGISLLAMSTLLYESGNYVEAIEKLQKVENFK 138 (435)
Q Consensus 107 ~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~ 138 (435)
.|..+...|.-+..+|+|.+|+-+|+.+.+..
T Consensus 5 ~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L 36 (75)
T cd02682 5 MARKYAINAVKAEKEGNAEDAITNYKKAIEVL 36 (75)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 56778888999999999999999999986654
No 312
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=64.54 E-value=11 Score=27.21 Aligned_cols=24 Identities=29% Similarity=0.320 Sum_probs=21.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 013867 112 LAMSTLLYESGNYVEAIEKLQKVE 135 (435)
Q Consensus 112 ~nLa~ly~~qGky~eA~~l~~ral 135 (435)
.+||..|.+.|+++.|.++++..+
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHH
Confidence 589999999999999999998874
No 313
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=64.39 E-value=1.3e+02 Score=29.14 Aligned_cols=82 Identities=15% Similarity=0.116 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHH
Q 013867 237 LLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVG 316 (435)
Q Consensus 237 ~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va 316 (435)
...++++.+|++.+.+... . - | .......+|..|...|+|++|..+|+++...+.+ ..=+.-..
T Consensus 155 ~~iI~lL~~A~~~f~~~~~---~-R-----~-----~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~--egW~~l~~ 218 (247)
T PF11817_consen 155 KLIIELLEKAYEQFKKYGQ---N-R-----M-----ASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRR--EGWWSLLT 218 (247)
T ss_pred HHHHHHHHHHHHHHHHhcc---c-h-----H-----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh--CCcHHHHH
Confidence 3568899999999764331 0 0 1 1123358999999999999999999999655442 12234467
Q ss_pred HHHHHHHHHHHHhhhhhh
Q 013867 317 VVLTCLALMFRNKAMQEH 334 (435)
Q Consensus 317 ~~L~nLA~ly~~qG~~e~ 334 (435)
.++..|...+...|+.++
T Consensus 219 ~~l~~l~~Ca~~~~~~~~ 236 (247)
T PF11817_consen 219 EVLWRLLECAKRLGDVED 236 (247)
T ss_pred HHHHHHHHHHHHhCCHHH
Confidence 778888999999888654
No 314
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=64.30 E-value=9.7 Score=37.33 Aligned_cols=87 Identities=17% Similarity=0.195 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcC
Q 013867 275 AATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKA 354 (435)
Q Consensus 275 ~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~ 354 (435)
.-+..-|++|.+.|-++=|.-=|.|+|+| .|+.+.+.|-||.-+-.-|+|+.| ..-|...++.
T Consensus 66 ~l~fERGvlYDSlGL~~LAR~DftQaLai--------~P~m~~vfNyLG~Yl~~a~~fdaa------~eaFds~~EL--- 128 (297)
T COG4785 66 QLLFERGVLYDSLGLRALARNDFSQALAI--------RPDMPEVFNYLGIYLTQAGNFDAA------YEAFDSVLEL--- 128 (297)
T ss_pred HHHHHhcchhhhhhHHHHHhhhhhhhhhc--------CCCcHHHHHHHHHHHHhcccchHH------HHHhhhHhcc---
Confidence 34567899999999999999999999998 488888999999999988887655 2333333322
Q ss_pred CCCCCCchhhhhccHHHHHHHhcCHHHH
Q 013867 355 PPLESEGVETKVDRTDIVALARGGYAEA 382 (435)
Q Consensus 355 ~~~~hp~~a~~l~nla~~~~a~G~yaea 382 (435)
| |..--..-|+++...--|||.-|
T Consensus 129 ---D-p~y~Ya~lNRgi~~YY~gR~~LA 152 (297)
T COG4785 129 ---D-PTYNYAHLNRGIALYYGGRYKLA 152 (297)
T ss_pred ---C-CcchHHHhccceeeeecCchHhh
Confidence 2 22222333566666666777655
No 315
>KOG2460 consensus Signal recognition particle, subunit Srp68 [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.13 E-value=2.3e+02 Score=31.19 Aligned_cols=70 Identities=14% Similarity=0.179 Sum_probs=48.9
Q ss_pred chHHHHHHHHHHHHHHHHhcccCCCCCcccc---cccchHHHH-----HH-HH-HHHHHHHHcCCHHHHHHHHHHHHHHH
Q 013867 235 NFLLAKKFYQKVIEVLAEQKDFSDMNTLGSC---NMALEEVAL-----AA-TF-ALGQLEAHMGNFGDAEEILTRTLTKT 304 (435)
Q Consensus 235 ~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~---~~~~~~~~l-----~~-l~-nLa~ly~~qG~y~eAe~l~~rAL~I~ 304 (435)
++.+=+.+|.-.++++++... -+|.. ++.. .+.+ .+ .| -+|..|..++||.||..||.||..-.
T Consensus 379 rpqdl~RLYd~iiknl~e~~e-----lPG~~~D~~l~s-qle~~~~~fkafRC~~iA~sY~a~~K~~EAlALy~Ra~syl 452 (593)
T KOG2460|consen 379 RPQDLERLYDSIIKNLSEIME-----LPGLESDKELQS-QLELKKLYFKAFRCFYIAVSYQAKKKYSEALALYVRAYSYL 452 (593)
T ss_pred CHHHHHHHHHHHHHHHHHHHh-----CCCcccchHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688888899988888877655 22321 1100 0111 11 12 57999999999999999999999998
Q ss_pred HHhhCC
Q 013867 305 EELFGS 310 (435)
Q Consensus 305 e~~lG~ 310 (435)
+++.+.
T Consensus 453 qe~~~~ 458 (593)
T KOG2460|consen 453 QEVNSE 458 (593)
T ss_pred HHHHhh
Confidence 888773
No 316
>KOG2168 consensus Cullins [Cell cycle control, cell division, chromosome partitioning]
Probab=62.64 E-value=79 Score=36.38 Aligned_cols=29 Identities=17% Similarity=0.074 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013867 106 WRGISLLAMSTLLYESGNYVEAIEKLQKV 134 (435)
Q Consensus 106 ~~A~~l~nLa~ly~~qGky~eA~~l~~ra 134 (435)
++-+.+.--|.-..++|.|++|+.+|+.+
T Consensus 620 ~~~~i~~~vA~~a~~~G~~~~sI~LY~la 648 (835)
T KOG2168|consen 620 DLQKIILEVASEADEDGLFEDAILLYHLA 648 (835)
T ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 55566667788899999999999999987
No 317
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=62.63 E-value=2.3e+02 Score=30.75 Aligned_cols=58 Identities=17% Similarity=0.131 Sum_probs=41.6
Q ss_pred HHHHHH--HHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013867 221 SAALSY--GEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILT 298 (435)
Q Consensus 221 ~~a~~l--a~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~ 298 (435)
..++-+ |+++.++|+|.++.-+-.=..+| . | +..++--||..+..+.+|+||-.++.
T Consensus 461 eian~LaDAEyLysqgey~kc~~ys~WL~~i-----------a-------P---S~~~~RLlGl~l~e~k~Y~eA~~~l~ 519 (549)
T PF07079_consen 461 EIANFLADAEYLYSQGEYHKCYLYSSWLTKI-----------A-------P---SPQAYRLLGLCLMENKRYQEAWEYLQ 519 (549)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-----------C-------C---cHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 345545 57899999999987666555555 1 1 12456678888999999999988875
Q ss_pred H
Q 013867 299 R 299 (435)
Q Consensus 299 r 299 (435)
.
T Consensus 520 ~ 520 (549)
T PF07079_consen 520 K 520 (549)
T ss_pred h
Confidence 3
No 318
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=62.09 E-value=12 Score=23.50 Aligned_cols=25 Identities=20% Similarity=0.295 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Q 013867 110 SLLAMSTLLYESGNYVEAIEKLQKV 134 (435)
Q Consensus 110 ~l~nLa~ly~~qGky~eA~~l~~ra 134 (435)
+++.|=..|.+.|++++|+++|++-
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M 26 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEM 26 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 5778888999999999999999875
No 319
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=62.06 E-value=22 Score=28.70 Aligned_cols=34 Identities=12% Similarity=0.029 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhC
Q 013867 276 ATFALGQLEAHMGNFGDAEEILTRTLTKTEELFG 309 (435)
Q Consensus 276 ~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG 309 (435)
.+...|.-+.++|+|.||..+|+.|.+...+++-
T Consensus 8 ~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~ 41 (75)
T cd02682 8 KYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVK 41 (75)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 4567888999999999999999999999877654
No 320
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=61.46 E-value=18 Score=27.13 Aligned_cols=29 Identities=17% Similarity=0.229 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 013867 110 SLLAMSTLLYESGNYVEAIEKLQKVENFK 138 (435)
Q Consensus 110 ~l~nLa~ly~~qGky~eA~~l~~ral~i~ 138 (435)
.++.||..+++.|+|++|....++.+.+-
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~e 31 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIE 31 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 57789999999999999999999886654
No 321
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=61.02 E-value=13 Score=40.96 Aligned_cols=87 Identities=11% Similarity=0.057 Sum_probs=59.7
Q ss_pred HHHHHHHHHHH-HhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013867 221 SAALSYGEYLH-ATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTR 299 (435)
Q Consensus 221 ~~a~~la~~~~-~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~r 299 (435)
....+++.+|+ .+|+-.+|.++|.+|+... - ++ . +| ..+..||.++..+|.-.+|--++.-
T Consensus 213 w~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~---~---~h--~-------kd---i~lLSlaTiL~RaG~sadA~iILhA 274 (886)
T KOG4507|consen 213 WVLHNMASFYWRIKGEPYQAVECAMRALHFS---S---RH--N-------KD---IALLSLATVLHRAGFSADAAVILHA 274 (886)
T ss_pred HHHHHHHHHHHHHcCChhhhhHHHHHHhhhC---C---cc--c-------cc---chhhhHHHHHHHcccccchhheeeh
Confidence 44556777765 6999999999999999772 1 11 0 11 3577899999999999999998877
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhh
Q 013867 300 TLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQE 333 (435)
Q Consensus 300 AL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e 333 (435)
|+.-.- .++.-...++..|...|.|.
T Consensus 275 A~~dA~--------~~t~n~y~l~~i~aml~~~N 300 (886)
T KOG4507|consen 275 ALDDAD--------FFTSNYYTLGNIYAMLGEYN 300 (886)
T ss_pred hccCCc--------cccccceeHHHHHHHHhhhh
Confidence 765433 33333555566666555543
No 322
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=59.98 E-value=1.5e+02 Score=31.91 Aligned_cols=114 Identities=14% Similarity=0.058 Sum_probs=76.5
Q ss_pred hHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHH--HHHHHHHHHcCCHHHHHHHH
Q 013867 220 GSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAAT--FALGQLEAHMGNFGDAEEIL 297 (435)
Q Consensus 220 ~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l--~nLa~ly~~qG~y~eAe~l~ 297 (435)
..+++.-|.-++.||+|..|.--|.-||+...+..- .+++..+ ...|-..+++. ..|...|..+++-+-|...-
T Consensus 176 l~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a-~~k~~~~---~~~di~~vaSfIetklv~CYL~~rkpdlALnh~ 251 (569)
T PF15015_consen 176 LQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAA-LSKPFKA---SAEDISSVASFIETKLVTCYLRMRKPDLALNHS 251 (569)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhh-ccCCCCC---ChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHH
Confidence 455666678889999999999999999999865322 2221211 11222344543 37899999999999999998
Q ss_pred HHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhh-hhhHHHHHHH
Q 013867 298 TRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHS-SALLIQEGLY 345 (435)
Q Consensus 298 ~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A-~~~~~Ae~Ly 345 (435)
.|++.. . |.+-.-.-.-|.+++...+|.+| .+.+.|.=+|
T Consensus 252 hrsI~l-----n---P~~frnHLrqAavfR~LeRy~eAarSamia~ymy 292 (569)
T PF15015_consen 252 HRSINL-----N---PSYFRNHLRQAAVFRRLERYSEAARSAMIADYMY 292 (569)
T ss_pred hhhhhc-----C---cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888753 2 33333344557788888888665 4555555555
No 323
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.79 E-value=22 Score=40.70 Aligned_cols=32 Identities=25% Similarity=0.363 Sum_probs=27.6
Q ss_pred chhHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Q 013867 218 CTGSAALSYGEYLHATRNFLLAKKFYQKVIEV 249 (435)
Q Consensus 218 ~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I 249 (435)
.+..++..||..+..+|+|++|...|-+++..
T Consensus 366 ~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~ 397 (933)
T KOG2114|consen 366 TLAEIHRKYGDYLYGKGDFDEATDQYIETIGF 397 (933)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence 34567777999999999999999999999865
No 324
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=59.58 E-value=25 Score=40.41 Aligned_cols=81 Identities=19% Similarity=0.131 Sum_probs=55.9
Q ss_pred cCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhh
Q 013867 287 MGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKV 366 (435)
Q Consensus 287 qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l 366 (435)
.++|.+|.....+.|. .||+.-.+..-=|....++|++++| + .+|+-.+.++++ | ..+|
T Consensus 22 ~~qfkkal~~~~kllk--------k~Pn~~~a~vLkaLsl~r~gk~~ea---------~-~~Le~~~~~~~~--D-~~tL 80 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLK--------KHPNALYAKVLKALSLFRLGKGDEA---------L-KLLEALYGLKGT--D-DLTL 80 (932)
T ss_pred hHHHHHHHHHHHHHHH--------HCCCcHHHHHHHHHHHHHhcCchhH---------H-HHHhhhccCCCC--c-hHHH
Confidence 4666666666665553 6999888888888888999998776 2 444444433333 3 2256
Q ss_pred ccHHHHHHHhcCHHHHhhHhhh
Q 013867 367 DRTDIVALARGGYAEALSVQQN 388 (435)
Q Consensus 367 ~nla~~~~a~G~yaeal~~~~~ 388 (435)
.-+-.+|..+|.++++..++++
T Consensus 81 q~l~~~y~d~~~~d~~~~~Ye~ 102 (932)
T KOG2053|consen 81 QFLQNVYRDLGKLDEAVHLYER 102 (932)
T ss_pred HHHHHHHHHHhhhhHHHHHHHH
Confidence 6677889999999999887743
No 325
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=58.69 E-value=94 Score=24.90 Aligned_cols=43 Identities=14% Similarity=0.151 Sum_probs=31.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHH
Q 013867 278 FALGQLEAHMGNFGDAEEILTRTLTKTEELF-GSHHPKVGVVLT 320 (435)
Q Consensus 278 ~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~l-G~~HP~va~~L~ 320 (435)
...|.-....|+|++|..+|.+++..+.... ++..|..-.++.
T Consensus 10 ~~~Ave~d~~~~y~eA~~~Y~~~i~~~~~~~k~e~~~~~k~~ir 53 (75)
T cd02677 10 IRLALEKEEEGDYEAAFEFYRAGVDLLLKGVQGDSSPERREAVK 53 (75)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 3444455556999999999999999999865 776666544443
No 326
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=58.37 E-value=27 Score=28.17 Aligned_cols=35 Identities=11% Similarity=0.175 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCc
Q 013867 60 PVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPS 98 (435)
Q Consensus 60 ~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~ 98 (435)
..|.+++..|.... ..|+|.+|+.+|+.+++....
T Consensus 4 ~~Ai~~a~~Ave~D----~~g~y~eA~~~Y~~aie~l~~ 38 (76)
T cd02681 4 RDAVQFARLAVQRD----QEGRYSEAVFYYKEAAQLLIY 38 (76)
T ss_pred HHHHHHHHHHHHHH----HccCHHHHHHHHHHHHHHHHH
Confidence 56888899999884 368999999999999986655
No 327
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=58.22 E-value=7 Score=40.39 Aligned_cols=79 Identities=16% Similarity=0.146 Sum_probs=65.4
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhh
Q 013867 286 HMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETK 365 (435)
Q Consensus 286 ~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~ 365 (435)
..|.+++|.++|++|+.+ .|..+..+.+.|.+|....+.-. |+.=|..|++|- ||++..
T Consensus 126 n~G~~~~ai~~~t~ai~l--------np~~a~l~~kr~sv~lkl~kp~~------airD~d~A~ein-------~Dsa~~ 184 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIEL--------NPPLAILYAKRASVFLKLKKPNA------AIRDCDFAIEIN-------PDSAKG 184 (377)
T ss_pred cCcchhhhhccccccccc--------CCchhhhcccccceeeeccCCch------hhhhhhhhhccC-------cccccc
Confidence 469999999999999864 79999999999999998888544 488899999887 566777
Q ss_pred hccHHHHHHHhcCHHHHhhH
Q 013867 366 VDRTDIVALARGGYAEALSV 385 (435)
Q Consensus 366 l~nla~~~~a~G~yaeal~~ 385 (435)
.-.++.+...+|.++++-+.
T Consensus 185 ykfrg~A~rllg~~e~aa~d 204 (377)
T KOG1308|consen 185 YKFRGYAERLLGNWEEAAHD 204 (377)
T ss_pred cchhhHHHHHhhchHHHHHH
Confidence 77788888888988888554
No 328
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=57.89 E-value=24 Score=28.44 Aligned_cols=32 Identities=19% Similarity=0.186 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 013867 107 RGISLLAMSTLLYESGNYVEAIEKLQKVENFK 138 (435)
Q Consensus 107 ~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~ 138 (435)
-|..+..-|.-+...|+|++|+.+|.++++..
T Consensus 5 ~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l 36 (77)
T cd02683 5 AAKEVLKRAVELDQEGRFQEALVCYQEGIDLL 36 (77)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 34556666777888999999999999986654
No 329
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=57.29 E-value=76 Score=32.99 Aligned_cols=77 Identities=12% Similarity=0.081 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 013867 61 VVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWR-GISLLAMSTLLYESGNYVEAIEKLQKVENFKN 139 (435)
Q Consensus 61 vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~-A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e 139 (435)
+|.-.-.=|--|-++ -+|..|+..|..+|... ..+|++ |..|+|.|-....-|+|-.|+.=..+++.+..
T Consensus 80 ~Aen~KeeGN~~fK~----Kryk~A~~~Yt~Glk~k-----c~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P 150 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKE----KRYKDAVESYTEGLKKK-----CADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKP 150 (390)
T ss_pred HHHHHHHHhHHHHHh----hhHHHHHHHHHHHHhhc-----CCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 444444444444322 37999999999999765 445555 55689999999999999999999999999888
Q ss_pred hhHHHHH
Q 013867 140 SILGVRV 146 (435)
Q Consensus 140 ~~L~i~v 146 (435)
.++....
T Consensus 151 ~h~Ka~~ 157 (390)
T KOG0551|consen 151 THLKAYI 157 (390)
T ss_pred chhhhhh
Confidence 8876443
No 330
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=57.17 E-value=46 Score=38.96 Aligned_cols=74 Identities=22% Similarity=0.200 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHH--HHHHHHhhhhhhhhhhHHHHHHHHHHHHHhc
Q 013867 276 ATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCL--ALMFRNKAMQEHSSALLIQEGLYRRALEFLK 353 (435)
Q Consensus 276 ~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nL--A~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k 353 (435)
++..+|.....|-+=..-.+.|.+||..+++.-| .++.-|.-| |.||+++|+|+|= ...|.-|+.-+
T Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~- 582 (932)
T PRK13184 514 AQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG----GVGAPLEYLGKALVYQRLGEYNEE------IKSLLLALKRY- 582 (932)
T ss_pred HHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC----CCCCchHHHhHHHHHHHhhhHHHH------HHHHHHHHHhc-
Confidence 5666777666655555555899999999998755 466666666 5789999998653 45555555444
Q ss_pred CCCCCCCchh
Q 013867 354 APPLESEGVE 363 (435)
Q Consensus 354 ~~~~~hp~~a 363 (435)
+.||.+.
T Consensus 583 ---~~~~~~~ 589 (932)
T PRK13184 583 ---SQHPEIS 589 (932)
T ss_pred ---CCCCccH
Confidence 6777644
No 331
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=56.00 E-value=27 Score=27.41 Aligned_cols=30 Identities=27% Similarity=0.379 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 013867 109 ISLLAMSTLLYESGNYVEAIEKLQKVENFK 138 (435)
Q Consensus 109 ~~l~nLa~ly~~qGky~eA~~l~~ral~i~ 138 (435)
..+..-|.-+...|+|++|+.+|.++++..
T Consensus 9 ~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l 38 (77)
T smart00745 9 KELISKALKADEAGDYEEALELYKKAIEYL 38 (77)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 334444455667999999999999986654
No 332
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=55.44 E-value=15 Score=22.76 Aligned_cols=25 Identities=24% Similarity=0.218 Sum_probs=20.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 013867 277 TFALGQLEAHMGNFGDAEEILTRTL 301 (435)
Q Consensus 277 l~nLa~ly~~qG~y~eAe~l~~rAL 301 (435)
++.|=..|...|++++|+.+|++-.
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~ 27 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMR 27 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHh
Confidence 4566778999999999999998754
No 333
>PF13041 PPR_2: PPR repeat family
Probab=55.44 E-value=20 Score=25.47 Aligned_cols=27 Identities=11% Similarity=0.348 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013867 109 ISLLAMSTLLYESGNYVEAIEKLQKVE 135 (435)
Q Consensus 109 ~~l~nLa~ly~~qGky~eA~~l~~ral 135 (435)
.++|.|=..|.+.|++++|.++|++-.
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~ 30 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMK 30 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 578889999999999999999999863
No 334
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=54.65 E-value=75 Score=35.36 Aligned_cols=33 Identities=15% Similarity=0.062 Sum_probs=26.2
Q ss_pred CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013867 102 LAESWRGISLLAMSTLLYESGNYVEAIEKLQKV 134 (435)
Q Consensus 102 ~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ra 134 (435)
.++...-+.....|.-..++|++.+|+.+|.-|
T Consensus 408 ~~~~~~~~i~~~~A~~~e~~g~~~dAi~Ly~La 440 (613)
T PF04097_consen 408 DDEDFLREIIEQAAREAEERGRFEDAILLYHLA 440 (613)
T ss_dssp SSSHHHHHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 344567777888889999999999999999865
No 335
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=53.92 E-value=1.1e+02 Score=31.83 Aligned_cols=50 Identities=22% Similarity=0.094 Sum_probs=38.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhH-HHHHHHHHHHHHHhhh
Q 013867 277 TFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKV-GVVLTCLALMFRNKAM 331 (435)
Q Consensus 277 l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~v-a~~L~nLA~ly~~qG~ 331 (435)
.-.=|+-|.+-.+|..|+.+|++.|..- -..|++ ++.++|.|..-.--|+
T Consensus 84 ~KeeGN~~fK~Kryk~A~~~Yt~Glk~k-----c~D~dlnavLY~NRAAa~~~l~N 134 (390)
T KOG0551|consen 84 YKEEGNEYFKEKRYKDAVESYTEGLKKK-----CADPDLNAVLYTNRAAAQLYLGN 134 (390)
T ss_pred HHHHhHHHHHhhhHHHHHHHHHHHHhhc-----CCCccHHHHHHhhHHHHHHHHHH
Confidence 3456888999999999999999998752 245665 6778888887776665
No 336
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=53.49 E-value=18 Score=29.43 Aligned_cols=28 Identities=18% Similarity=0.033 Sum_probs=21.8
Q ss_pred HHHHcCCHHHHHHHHHHHHHhhhhhHHH
Q 013867 117 LLYESGNYVEAIEKLQKVENFKNSILGV 144 (435)
Q Consensus 117 ly~~qGky~eA~~l~~ral~i~e~~L~i 144 (435)
-+.+.|..++|+.+|++++.+.+..+.|
T Consensus 17 ~~dE~g~~e~Al~~Y~~gi~~l~eg~ai 44 (79)
T cd02679 17 RADEWGDKEQALAHYRKGLRELEEGIAV 44 (79)
T ss_pred hhhhcCCHHHHHHHHHHHHHHHHHHcCC
Confidence 4455799999999999998877666554
No 337
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=53.46 E-value=5.5 Score=41.12 Aligned_cols=138 Identities=14% Similarity=-0.014 Sum_probs=93.4
Q ss_pred HHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhC
Q 013867 231 HATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAAT-FALGQLEAHMGNFGDAEEILTRTLTKTEELFG 309 (435)
Q Consensus 231 ~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l-~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG 309 (435)
.+.|.+++|+++|-+|+++ ++. ++.+ .+-|.++.+.++...|+.=|-.|+.|
T Consensus 125 ln~G~~~~ai~~~t~ai~l---------np~------------~a~l~~kr~sv~lkl~kp~~airD~d~A~ei------ 177 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIEL---------NPP------------LAILYAKRASVFLKLKKPNAAIRDCDFAIEI------ 177 (377)
T ss_pred hcCcchhhhhccccccccc---------CCc------------hhhhcccccceeeeccCCchhhhhhhhhhcc------
Confidence 3579999999999999877 111 1223 47899999999999999999999988
Q ss_pred CCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhc-cHHHHHHHhcCHHHHhhHh--
Q 013867 310 SHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVD-RTDIVALARGGYAEALSVQ-- 386 (435)
Q Consensus 310 ~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~-nla~~~~a~G~yaeal~~~-- 386 (435)
.|+.+..+---+...+.+|++++| -..++.|+.+- .+++-..++.-+. |..-+-.-+++|.++..-.
T Consensus 178 --n~Dsa~~ykfrg~A~rllg~~e~a------a~dl~~a~kld--~dE~~~a~lKeV~p~a~ki~e~~~k~er~~~e~~~ 247 (377)
T KOG1308|consen 178 --NPDSAKGYKFRGYAERLLGNWEEA------AHDLALACKLD--YDEANSATLKEVFPNAGKIEEHRRKYERAREEREI 247 (377)
T ss_pred --CcccccccchhhHHHHHhhchHHH------HHHHHHHHhcc--ccHHHHHHHHHhccchhhhhhchhHHHHHHHHhcc
Confidence 678888888889999999998876 57777777653 0111112222222 4444445556666654432
Q ss_pred ------hhhhhHHHHHHHHHHHHhc
Q 013867 387 ------QNRKDEGERMKRWAEAAWR 405 (435)
Q Consensus 387 ------~~r~~eae~~~~~a~~~~~ 405 (435)
.++..+.+.|.+.-+.-|.
T Consensus 248 ~~r~er~r~~r~~~e~~~~e~~k~~ 272 (377)
T KOG1308|consen 248 KERVERVRYAREPEEMANPEEFKRM 272 (377)
T ss_pred cccccccccccchhhhcChhhhhhh
Confidence 2233345666666666663
No 338
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=53.33 E-value=5.3e+02 Score=31.97 Aligned_cols=165 Identities=14% Similarity=0.063 Sum_probs=91.9
Q ss_pred CCCChHHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013867 55 GLNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKV 134 (435)
Q Consensus 55 g~~~~~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ra 134 (435)
+.+--++=..|.||=..|. .=+.-..+||+|-.+. +--+++..|..+|..-+++++|.++|++-
T Consensus 1493 eeEKLNiWiA~lNlEn~yG-------~eesl~kVFeRAcqyc---------d~~~V~~~L~~iy~k~ek~~~A~ell~~m 1556 (1710)
T KOG1070|consen 1493 EEEKLNIWIAYLNLENAYG-------TEESLKKVFERACQYC---------DAYTVHLKLLGIYEKSEKNDEADELLRLM 1556 (1710)
T ss_pred hHHHHHHHHHHHhHHHhhC-------cHHHHHHHHHHHHHhc---------chHHHHHHHHHHHHHhhcchhHHHHHHHH
Confidence 3444566677778777773 2335667888887665 45678899999999999999999999987
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccc
Q 013867 135 ENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQE 214 (435)
Q Consensus 135 l~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~ 214 (435)
++-......+ |=..+-..+.+.+..+|..+..+++.-+-++. ....-++-+. ++--.|+.+.+..+
T Consensus 1557 ~KKF~q~~~v----W~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~e--------Hv~~IskfAq--LEFk~GDaeRGRtl 1622 (1710)
T KOG1070|consen 1557 LKKFGQTRKV----WIMYADFLLRQNEAEAARELLKRALKSLPKQE--------HVEFISKFAQ--LEFKYGDAERGRTL 1622 (1710)
T ss_pred HHHhcchhhH----HHHHHHHHhcccHHHHHHHHHHHHHhhcchhh--------hHHHHHHHHH--HHhhcCCchhhHHH
Confidence 6543322222 21111112222222445555555554444322 1111222111 11223443333222
Q ss_pred c------ccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Q 013867 215 E------EGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEV 249 (435)
Q Consensus 215 ~------~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I 249 (435)
+ +|.--++-+-|...-..+|.-+-+..+|+|+++.
T Consensus 1623 fEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l 1663 (1710)
T KOG1070|consen 1623 FEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIEL 1663 (1710)
T ss_pred HHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhc
Confidence 2 2222233344444445678889999999999876
No 339
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=53.25 E-value=2.1e+02 Score=32.44 Aligned_cols=71 Identities=17% Similarity=0.180 Sum_probs=41.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHH-HHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCC
Q 013867 280 LGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVG-VVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLE 358 (435)
Q Consensus 280 La~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va-~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~ 358 (435)
+-+++...|+|+||-.+- +.||+.. .++.--|.-+....+++|| ..-|-||=.-.++
T Consensus 779 iVqlHve~~~W~eAFalA------------e~hPe~~~dVy~pyaqwLAE~DrFeEA------qkAfhkAGr~~EA---- 836 (1081)
T KOG1538|consen 779 LVQLHVETQRWDEAFALA------------EKHPEFKDDVYMPYAQWLAENDRFEEA------QKAFHKAGRQREA---- 836 (1081)
T ss_pred HhhheeecccchHhHhhh------------hhCccccccccchHHHHhhhhhhHHHH------HHHHHHhcchHHH----
Confidence 344566778888775433 3688743 4455666666666666555 5666665433332
Q ss_pred CCchhhhhccHHHHH
Q 013867 359 SEGVETKVDRTDIVA 373 (435)
Q Consensus 359 hp~~a~~l~nla~~~ 373 (435)
-.+..+|.|.+++.
T Consensus 837 -~~vLeQLtnnav~E 850 (1081)
T KOG1538|consen 837 -VQVLEQLTNNAVAE 850 (1081)
T ss_pred -HHHHHHhhhhhhhh
Confidence 13555666666553
No 340
>PF13041 PPR_2: PPR repeat family
Probab=52.96 E-value=23 Score=25.22 Aligned_cols=28 Identities=14% Similarity=0.111 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013867 275 AATFALGQLEAHMGNFGDAEEILTRTLT 302 (435)
Q Consensus 275 ~~l~nLa~ly~~qG~y~eAe~l~~rAL~ 302 (435)
.+.|.|=..|.+.|++++|..+|++-..
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~ 31 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMKK 31 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4566777789999999999999998763
No 341
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=52.91 E-value=3.6e+02 Score=29.84 Aligned_cols=208 Identities=13% Similarity=0.063 Sum_probs=113.4
Q ss_pred ChhcHHHHHHHHHHHHhccCcCCC-CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 013867 78 SDESYSQGMLVLEQCLSTQPSDGQ-LAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLY 156 (435)
Q Consensus 78 s~G~Y~eA~~~~eqaL~i~~~~lG-~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~ 156 (435)
..|++.+|....++.-....+... .........+.-.|..+...|+.+.|+..|.+..........
T Consensus 373 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~------------- 439 (608)
T PF10345_consen 373 IRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAAN------------- 439 (608)
T ss_pred HCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhc-------------
Confidence 467899999999987766544321 112335666777888899999999999999966433211110
Q ss_pred HhcCCCcc-hHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcC---CCcccccccccchhHHHHH-HHHHHH
Q 013867 157 LQLGQDDT-SSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHG---NLESGLQEEEGCTGSAALS-YGEYLH 231 (435)
Q Consensus 157 ~~~g~~~~-A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg---~h~~a~~~~~~~~~~~a~~-la~~~~ 231 (435)
..++..+ ..-..-+++-++....... +.+. ....+.+.+.. +++. ....++.. +-..++
T Consensus 440 -~~~~~~El~ila~LNl~~I~~~~~~~~--~~~~------~~~~l~~~i~p~~~~~~~-------~~~~~a~~~~~~~~~ 503 (608)
T PF10345_consen 440 -RKSKFRELYILAALNLAIILQYESSRD--DSES------ELNELLEQIEPLCSNSPN-------SYNRTAYCLVLATYN 503 (608)
T ss_pred -cCCcchHHHHHHHHHHHHHhHhhcccc--hhhh------HHHHHHHhcCccccCCcc-------HHHHHHHHHHHHHHh
Confidence 0111100 0000011111221111000 0000 01111222222 2211 11111111 111222
Q ss_pred --HhhchHHHHHHHHHHHHHH-HHhcccCCCCCcccccccchHHHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 013867 232 --ATRNFLLAKKFYQKVIEVL-AEQKDFSDMNTLGSCNMALEEVALA-ATFALGQLEAHMGNFGDAEEILTRTLTKTEEL 307 (435)
Q Consensus 232 --~~G~y~eAe~ly~rAL~I~-~~~~~~~~~~~l~~~~~~~~~~~l~-~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~ 307 (435)
.+-.+.++...++.+|.+. .+.. . .+ .+. +++=|+..+. .|+-.|......+|+....+.
T Consensus 504 ~~~~~~~ne~k~~l~~~L~~~~~~~~----n----------~~-l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~ 567 (608)
T PF10345_consen 504 TFEPFSSNEAKRHLQEALKMANNKLG----N----------SQ-LLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKS 567 (608)
T ss_pred hCCccccHHHHHHHHHHHHHHHHhhc----c----------ch-HHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhh
Confidence 3445569999999999996 2211 1 11 223 4566777777 899999999999999999988
Q ss_pred hCCCChhHHHHHH------HHHHHHHHhhhhhhh
Q 013867 308 FGSHHPKVGVVLT------CLALMFRNKAMQEHS 335 (435)
Q Consensus 308 lG~~HP~va~~L~------nLA~ly~~qG~~e~A 335 (435)
|++...+. -++..|..+|+.++|
T Consensus 568 -----~d~~~~LW~~v~~~~l~~~~~~~G~~~ka 596 (608)
T PF10345_consen 568 -----SDYSDQLWHLVASGMLADSYEVQGDRDKA 596 (608)
T ss_pred -----hhhhhHHHHHHHHHHHHHHHHHcCcHHHH
Confidence 66555544 677789999998887
No 342
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.63 E-value=2.3e+02 Score=29.72 Aligned_cols=65 Identities=18% Similarity=0.118 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHH--HHHHHHHHcCCHHHHHHHHH
Q 013867 221 SAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATF--ALGQLEAHMGNFGDAEEILT 298 (435)
Q Consensus 221 ~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~--nLa~ly~~qG~y~eAe~l~~ 298 (435)
.+....+-++.-.|++.|+.++.++.=.-+.. + . .+++-| --|..|..-+.|+.|++.|.
T Consensus 210 Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~--s-----~-----------mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 210 WASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQ--S-----W-----------MLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred HHHHHHHHHHHhcchhhhHHHHHHhcccchhh--h-----h-----------HHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 34455677888899999999988776655421 1 0 122222 34667777899999999998
Q ss_pred HHHHH
Q 013867 299 RTLTK 303 (435)
Q Consensus 299 rAL~I 303 (435)
+-+-.
T Consensus 272 ~ei~k 276 (491)
T KOG2610|consen 272 REIWK 276 (491)
T ss_pred HHHHH
Confidence 75543
No 343
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=51.74 E-value=40 Score=26.70 Aligned_cols=30 Identities=27% Similarity=0.324 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 013867 109 ISLLAMSTLLYESGNYVEAIEKLQKVENFK 138 (435)
Q Consensus 109 ~~l~nLa~ly~~qGky~eA~~l~~ral~i~ 138 (435)
..+..-|.-....|+|++|+++|.++++..
T Consensus 7 ~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l 36 (75)
T cd02678 7 IELVKKAIEEDNAGNYEEALRLYQHALEYF 36 (75)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 334444455677999999999999986654
No 344
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=51.74 E-value=32 Score=27.47 Aligned_cols=48 Identities=8% Similarity=0.023 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCC-CCCcchHHHHH
Q 013867 60 PVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDG-QLAESWRGISL 111 (435)
Q Consensus 60 ~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~l-G~~Hp~~A~~l 111 (435)
+-|..++.-|+... ..|+|++|..+|.+++..+...+ .+..|..-..+
T Consensus 4 ~~Ai~lv~~Av~~D----~~g~y~eA~~lY~~ale~~~~~~k~e~~~~~k~~l 52 (75)
T cd02684 4 EKAIALVVQAVKKD----QRGDAAAALSLYCSALQYFVPALHYETDAQRKEAL 52 (75)
T ss_pred HHHHHHHHHHHHHH----HhccHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHH
Confidence 35788888898874 36899999999999998776644 24444443333
No 345
>PF14357 DUF4404: Domain of unknown function (DUF4404)
Probab=50.79 E-value=16 Score=30.03 Aligned_cols=25 Identities=28% Similarity=0.406 Sum_probs=21.9
Q ss_pred HhhCCCChhHHHHHHHHHHHHHHhh
Q 013867 306 ELFGSHHPKVGVVLTCLALMFRNKA 330 (435)
Q Consensus 306 ~~lG~~HP~va~~L~nLA~ly~~qG 330 (435)
.-|-.+||.++.++.++...+.++|
T Consensus 60 ~~FE~~HP~l~~~lr~i~~sLa~MG 84 (85)
T PF14357_consen 60 ERFEASHPKLAGILRNIMDSLANMG 84 (85)
T ss_pred HHHHHhCCcHHHHHHHHHHHHHHCC
Confidence 3455799999999999999999887
No 346
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=50.20 E-value=40 Score=26.44 Aligned_cols=31 Identities=26% Similarity=0.359 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 013867 108 GISLLAMSTLLYESGNYVEAIEKLQKVENFK 138 (435)
Q Consensus 108 A~~l~nLa~ly~~qGky~eA~~l~~ral~i~ 138 (435)
|..+..-|.-....|+|++|+.+|..+++..
T Consensus 6 a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l 36 (75)
T cd02656 6 AKELIKQAVKEDEDGNYEEALELYKEALDYL 36 (75)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 3344455566777899999999999986543
No 347
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=49.22 E-value=73 Score=29.01 Aligned_cols=69 Identities=20% Similarity=0.260 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcch-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013867 60 PVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESW-RGISLLAMSTLLYESGNYVEAIEKLQKVEN 136 (435)
Q Consensus 60 ~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~-~A~~l~nLa~ly~~qGky~eA~~l~~ral~ 136 (435)
.....-.|||+++.++. +..+-++.+.++|..++ .+||. --..++-||.-+++.|+|+++..+...-++
T Consensus 30 ~s~~s~f~lAwaLV~S~-~~~dv~~GI~iLe~l~~-------~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSR-DTEDVQEGIVILEDLLK-------SAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred chHHHHHHHHHHHHccc-chHHHHHhHHHHHHHhh-------hcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 34566789999998775 55677888888888875 12333 445678899999999999999987766533
No 348
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=48.73 E-value=29 Score=38.54 Aligned_cols=96 Identities=20% Similarity=0.171 Sum_probs=68.2
Q ss_pred HHHHHHHH-HhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013867 224 LSYGEYLH-ATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLT 302 (435)
Q Consensus 224 ~~la~~~~-~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~ 302 (435)
+|+|.+|+ .+|+-..|..+.++|+-.. |++ .--++.|||++..+-|-..+|-.++.|+|+
T Consensus 610 ln~aglywr~~gn~~~a~~cl~~a~~~~------------------p~~-~~v~~v~la~~~~~~~~~~da~~~l~q~l~ 670 (886)
T KOG4507|consen 610 LNEAGLYWRAVGNSTFAIACLQRALNLA------------------PLQ-QDVPLVNLANLLIHYGLHLDATKLLLQALA 670 (886)
T ss_pred eecccceeeecCCcHHHHHHHHHHhccC------------------hhh-hcccHHHHHHHHHHhhhhccHHHHHHHHHh
Confidence 45566664 6999999999999999661 110 112467999999999999999999999999
Q ss_pred HHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 303 KTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 303 I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
|- ..-|-+--+ +|.+|-...+.++| ...+++|++.-
T Consensus 671 ~~-----~sepl~~~~---~g~~~l~l~~i~~a------~~~~~~a~~~~ 706 (886)
T KOG4507|consen 671 IN-----SSEPLTFLS---LGNAYLALKNISGA------LEAFRQALKLT 706 (886)
T ss_pred hc-----ccCchHHHh---cchhHHHHhhhHHH------HHHHHHHHhcC
Confidence 96 234544444 45555555554444 77888887654
No 349
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.72 E-value=60 Score=35.49 Aligned_cols=69 Identities=20% Similarity=0.159 Sum_probs=61.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhc
Q 013867 279 ALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLK 353 (435)
Q Consensus 279 nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k 353 (435)
-+|.++.+.|+-..|+.+|..++.- |...-.+|.-+..++.-||.+|..+|. ++.++..+..||-+-..
T Consensus 454 L~g~~lR~Lg~~~~a~~~f~i~~~~-e~~~~~d~w~~PfA~YElA~l~~~~~g-----~~~e~~~~L~kAr~~~~ 522 (546)
T KOG3783|consen 454 LKGVILRNLGDSEVAPKCFKIQVEK-ESKRTEDLWAVPFALYELALLYWDLGG-----GLKEARALLLKAREYAS 522 (546)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH-HHhhccccccccHHHHHHHHHHHhccc-----ChHHHHHHHHHHHhhcc
Confidence 4699999999999999999999988 888889999999999999999999987 25566888888887764
No 350
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=47.70 E-value=34 Score=21.61 Aligned_cols=26 Identities=12% Similarity=0.129 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013867 109 ISLLAMSTLLYESGNYVEAIEKLQKV 134 (435)
Q Consensus 109 ~~l~nLa~ly~~qGky~eA~~l~~ra 134 (435)
.+++.+-..+.+.|+++.|..+|..-
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M 27 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEM 27 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 46889999999999999999988764
No 351
>PF08969 USP8_dimer: USP8 dimerisation domain; InterPro: IPR015063 This domain is predominantly found in the amino terminal region of Ubiquitin carboxyl-terminal hydrolase 8 (USP8). It has no known function. ; PDB: 2XZE_B 2A9U_A.
Probab=45.80 E-value=41 Score=28.75 Aligned_cols=41 Identities=20% Similarity=0.132 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCch
Q 013867 315 VGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGV 362 (435)
Q Consensus 315 va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~ 362 (435)
+|..+...|..|...|+.+.| =-+|-|.+.+. ..=+.||+.
T Consensus 37 sa~~l~~~A~~~~~egd~E~A------Yvl~~R~~~L~-~ki~~Hpdy 77 (115)
T PF08969_consen 37 SANKLLREAEEYRQEGDEEQA------YVLYMRYLTLV-EKIPKHPDY 77 (115)
T ss_dssp HHHHHHHHHHHHHHCT-HHHH------HHHHHHHHHHH-CCHCCSCCC
T ss_pred HHHHHHHHHHHHHHCCCHHHH------HHHHHHHHHHH-HHhhcCccc
Confidence 678888899999999999988 58899999999 445778873
No 352
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=45.75 E-value=3.5e+02 Score=27.68 Aligned_cols=128 Identities=20% Similarity=0.288 Sum_probs=82.1
Q ss_pred hhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCC
Q 013867 233 TRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHH 312 (435)
Q Consensus 233 ~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~H 312 (435)
..+-+--..+|+-.|+-.++.+.+ ...= .+-..||.+|.+.|.|.+-+..+++--.-...-=|++.
T Consensus 118 S~~m~LLQ~FYeTTL~ALkdAKNe---RLWF-----------KTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD 183 (440)
T KOG1464|consen 118 SKNMDLLQEFYETTLDALKDAKNE---RLWF-----------KTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDD 183 (440)
T ss_pred hhhhHHHHHHHHHHHHHHHhhhcc---eeee-----------eccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchh
Confidence 344555667899999887665541 0110 01136999999999999999999998888888889888
Q ss_pred hhHHHHHHH----HHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhc-cHHHHHHHhcCHHHH
Q 013867 313 PKVGVVLTC----LALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVD-RTDIVALARGGYAEA 382 (435)
Q Consensus 313 P~va~~L~n----LA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~-nla~~~~a~G~yaea 382 (435)
..-++-|-- =-.+|-.|.+-.+ -..||++||.|--+ +.||-+.-.+. --+-+++.-|++++|
T Consensus 184 ~kKGtQLLEiYAlEIQmYT~qKnNKk------LK~lYeqalhiKSA--IPHPlImGvIRECGGKMHlreg~fe~A 250 (440)
T KOG1464|consen 184 QKKGTQLLEIYALEIQMYTEQKNNKK------LKALYEQALHIKSA--IPHPLIMGVIRECGGKMHLREGEFEKA 250 (440)
T ss_pred hhccchhhhhHhhHhhhhhhhcccHH------HHHHHHHHHHhhcc--CCchHHHhHHHHcCCccccccchHHHH
Confidence 876654433 2345666655332 26799999999754 56775322211 112234455555555
No 353
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=45.37 E-value=4.6e+02 Score=28.96 Aligned_cols=308 Identities=12% Similarity=0.004 Sum_probs=152.6
Q ss_pred HHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 013867 60 PVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKN 139 (435)
Q Consensus 60 ~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e 139 (435)
.-|....+||..+..- ..++++|+.+++|++.+.++ -+=.+ -.-..-.-|+.+|.+++... |.....+.++..+
T Consensus 57 ~ea~~~l~la~iL~~e---T~n~~~Ae~~L~k~~~l~~~-~~~~d-~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~ 130 (608)
T PF10345_consen 57 QEARVRLRLASILLEE---TENLDLAETYLEKAILLCER-HRLTD-LKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSE 130 (608)
T ss_pred HHHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhccc-cchHH-HHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHh
Confidence 3456667788887533 24799999999999988876 11111 11223334589999999988 9999988877665
Q ss_pred hhHHHHHHHHHHHHHH--HHhcCCCcchHHHHHHHHHHHHhcCC------------------CchhchhhHHHHHHHHHH
Q 013867 140 SILGVRVAAMEALAGL--YLQLGQDDTSSVVADKCLQLCEKHKP------------------ENYKTYGAVNSRANAVKG 199 (435)
Q Consensus 140 ~~L~i~vaale~L~g~--~~~~g~~~~A~~~~~~~~~l~~~~~~------------------~~~~eaeal~~~a~Ai~~ 199 (435)
..--....-...++.. .+..+++..|....+....+....+. ...+|.-....++.+...
T Consensus 131 ~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~ 210 (608)
T PF10345_consen 131 TYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQAR 210 (608)
T ss_pred ccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHh
Confidence 5100000000111111 11112333344333333333221110 001111111111111000
Q ss_pred HHHHhcCCCcccccccccchhHHHHHHHH--HHHHhhchHHHHHHHHHHHHHHHHhcccC---C-CC-------------
Q 013867 200 LVELAHGNLESGLQEEEGCTGSAALSYGE--YLHATRNFLLAKKFYQKVIEVLAEQKDFS---D-MN------------- 260 (435)
Q Consensus 200 ~~~~lgg~h~~a~~~~~~~~~~~a~~la~--~~~~~G~y~eAe~ly~rAL~I~~~~~~~~---~-~~------------- 260 (435)
.. .+.++ ...|.+ .+..-+-. ++-.+|+++.+.+..++-=..+.+.+... . ++
T Consensus 211 ~~-q~~~~------~~~~qL-~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~ 282 (608)
T PF10345_consen 211 SL-QLDPS------VHIPQL-KALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSS 282 (608)
T ss_pred hc-ccCCC------CCcHHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccc
Confidence 00 01111 001111 12221222 23357888888887666555544433311 0 00
Q ss_pred -----CcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhH------------------HH
Q 013867 261 -----TLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKV------------------GV 317 (435)
Q Consensus 261 -----~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~v------------------a~ 317 (435)
.+.-..++-+++.+=...==|..+...|+.++|+.++.+++.+-++..+...+.. -.
T Consensus 283 ~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~ 362 (608)
T PF10345_consen 283 NSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCY 362 (608)
T ss_pred cCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHH
Confidence 1111123333333222222256666778888999999999999999993222221 12
Q ss_pred HHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCC--CCchhhhhccHHHHHHHhcCHHHHhhHhh
Q 013867 318 VLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLE--SEGVETKVDRTDIVALARGGYAEALSVQQ 387 (435)
Q Consensus 318 ~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~--hp~~a~~l~nla~~~~a~G~yaeal~~~~ 387 (435)
++..++.....+|++.++ ..............+.. .........-.|+.+...|+.+.|+..+.
T Consensus 363 ~~~y~~~~~~~~~~~~~a------~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 363 LLFYQIWCNFIRGDWSKA------TQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHHHHHHHHHHCcCHHHH------HHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 334445555666665444 67777766666443321 11122233346777789999999999885
No 354
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=44.61 E-value=3e+02 Score=26.63 Aligned_cols=62 Identities=6% Similarity=0.007 Sum_probs=41.9
Q ss_pred HHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHH----cCCHHHHHHHHHHH
Q 013867 63 LQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYE----SGNYVEAIEKLQKV 134 (435)
Q Consensus 63 ~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~----qGky~eA~~l~~ra 134 (435)
....+++..+........++.+|..+|+++.. ......+.+||.+|.. ..++.+|...|++|
T Consensus 74 ~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~----------~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~A 139 (292)
T COG0790 74 AALALLGQMYGAGKGVSRDKTKAADWYRCAAA----------DGLAEALFNLGLMYANGRGVPLDLVKALKYYEKA 139 (292)
T ss_pred HHHHHHHHHHHhccCccccHHHHHHHHHHHhh----------cccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHH
Confidence 45556666664444344568888888885442 2355667778888887 44888888888887
No 355
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=44.37 E-value=38 Score=27.34 Aligned_cols=20 Identities=35% Similarity=0.305 Sum_probs=16.4
Q ss_pred HHHcCCHHHHHHHHHHHHHh
Q 013867 118 LYESGNYVEAIEKLQKVENF 137 (435)
Q Consensus 118 y~~qGky~eA~~l~~ral~i 137 (435)
--..|+|++|+++|.++++.
T Consensus 16 eD~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 16 EDEKGNAEEAIELYTEAVEL 35 (75)
T ss_pred hhHhhhHHHHHHHHHHHHHH
Confidence 34589999999999998654
No 356
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=44.10 E-value=3.9e+02 Score=27.82 Aligned_cols=63 Identities=17% Similarity=0.063 Sum_probs=42.9
Q ss_pred HHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHH--HHHHHHcCCHHHHHHHHHHHHH
Q 013867 64 QMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAM--STLLYESGNYVEAIEKLQKVEN 136 (435)
Q Consensus 64 ~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nL--a~ly~~qGky~eA~~l~~ral~ 136 (435)
.-.+.+..++ ..++|..|..+++..... +.++-. ...+..| |-.+|++.+|.+|.+.+++.+.
T Consensus 133 ~~~~~a~~l~----n~~~y~aA~~~l~~l~~r----l~~~~~--~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 133 REWRRAKELF----NRYDYGAAARILEELLRR----LPGREE--YQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHHHHHHHHH----hcCCHHHHHHHHHHHHHh----CCchhh--HHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4445555554 457999999999998864 222111 3344444 5568999999999999998643
No 357
>PF14346 DUF4398: Domain of unknown function (DUF4398)
Probab=43.22 E-value=87 Score=26.08 Aligned_cols=60 Identities=12% Similarity=0.095 Sum_probs=46.5
Q ss_pred hhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 013867 79 DESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFK 138 (435)
Q Consensus 79 ~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~ 138 (435)
...+.+|..-+.++-...-...-+.+...|.-....|....+.|+|.+|..+..++....
T Consensus 16 ~~~l~~A~~ai~~A~~~~a~~~Ap~el~~A~~~L~~A~~a~~~~~y~~A~~~A~~A~~~A 75 (103)
T PF14346_consen 16 NEELSDAEAAIQRAEAAGAEQYAPVELKEAREKLQRAKAALDDGDYERARRLAEQAQADA 75 (103)
T ss_pred HHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 356777777777777664444446677888889999999999999999999999886543
No 358
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=41.10 E-value=4.2e+02 Score=27.31 Aligned_cols=209 Identities=14% Similarity=0.136 Sum_probs=104.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh----hhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchh
Q 013867 113 AMSTLLYESGNYVEAIEKLQKVENF----KNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYG 188 (435)
Q Consensus 113 nLa~ly~~qGky~eA~~l~~ral~i----~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eae 188 (435)
.+|+-.-...+|++||..|++.+.- .++.+....+++=+++-+|..+|.+..--..-...-.... +. . .
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~-~f----t--k 80 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAME-DF----T--K 80 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHH-Hh----c--c
Confidence 4566667788999999999988754 4444544555666788888888876321111111111111 00 0 1
Q ss_pred hHHHHHHHHHHHHHHhcCCCccccccc----ccch----------hH--HHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 013867 189 AVNSRANAVKGLVELAHGNLESGLQEE----EGCT----------GS--AALSYGEYLHATRNFLLAKKFYQKVIEVLAE 252 (435)
Q Consensus 189 al~~~a~Ai~~~~~~lgg~h~~a~~~~----~~~~----------~~--~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~ 252 (435)
+ ...+.++.+++..-+..++ .+.. ..++ .. .-..+..++...|+|.+|..+-.-.+.-+.+
T Consensus 81 ~--k~~KiirtLiekf~~~~ds-l~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk 157 (421)
T COG5159 81 P--KITKIIRTLIEKFPYSSDS-LEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKK 157 (421)
T ss_pred h--hHHHHHHHHHHhcCCCCcc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHh
Confidence 1 2344455555544333221 0000 0000 00 0112344566677777777776666665432
Q ss_pred hcccCCCCCcccccccchHHHHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHH-HHHhh
Q 013867 253 QKDFSDMNTLGSCNMALEEVALAATFAL-GQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALM-FRNKA 330 (435)
Q Consensus 253 ~~~~~~~~~l~~~~~~~~~~~l~~l~nL-a~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~l-y~~qG 330 (435)
.. |.+.+..+.-| .-+|....+..++..-++-|-.....++-| |.+-.-+.-+... .+.--
T Consensus 158 ~D---------------DK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCP--pqlqa~lDL~sGIlhcdd~ 220 (421)
T COG5159 158 YD---------------DKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCP--PQLQAQLDLLSGILHCDDR 220 (421)
T ss_pred hc---------------CccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCC--HHHHHHHHHhccceeeccc
Confidence 11 11233333333 456666677777777777666666666655 3333333333222 23333
Q ss_pred hhhhhhhhHHHHHHHHHHHHHhcC
Q 013867 331 MQEHSSALLIQEGLYRRALEFLKA 354 (435)
Q Consensus 331 ~~e~A~~~~~Ae~Ly~rAL~I~k~ 354 (435)
+ |..|-..|-.|++.+..
T Consensus 221 d------yktA~SYF~Ea~Egft~ 238 (421)
T COG5159 221 D------YKTASSYFIEALEGFTL 238 (421)
T ss_pred c------chhHHHHHHHHHhcccc
Confidence 3 44455667777777743
No 359
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=40.84 E-value=3.6e+02 Score=26.46 Aligned_cols=74 Identities=15% Similarity=0.133 Sum_probs=52.8
Q ss_pred chhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 013867 218 CTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEIL 297 (435)
Q Consensus 218 ~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~ 297 (435)
..+...+.++.+.+.+|+|+.|.....++..... . .. ... | ....--+.+...+|+-.+|...+
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~---~--~~-~~~-----~-----~v~~e~akllw~~g~~~~Ai~~L 207 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNP---S--SE-SLL-----P-----RVFLEYAKLLWAQGEQEEAIQKL 207 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCC---c--cc-CCC-----c-----chHHHHHHHHHHcCCHHHHHHHH
Confidence 3455667788999999999999999999887621 0 00 101 1 12345688999999999999999
Q ss_pred HHHHH-HHHHh
Q 013867 298 TRTLT-KTEEL 307 (435)
Q Consensus 298 ~rAL~-I~e~~ 307 (435)
++.+. ...+.
T Consensus 208 ~~~~~~~~~~~ 218 (352)
T PF02259_consen 208 RELLKCRLSKN 218 (352)
T ss_pred HHHHHHHhhhc
Confidence 99988 34433
No 360
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=40.32 E-value=1.2e+02 Score=33.53 Aligned_cols=86 Identities=14% Similarity=0.134 Sum_probs=54.1
Q ss_pred hhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHhhCC
Q 013867 233 TRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAH--MGNFGDAEEILTRTLTKTEELFGS 310 (435)
Q Consensus 233 ~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~--qG~y~eAe~l~~rAL~I~e~~lG~ 310 (435)
+-+-.|=..|-++-|-.+- ..| ++.. .=-+|+|||.|-.- ...-..++.+|.+|+...+..++.
T Consensus 250 ~td~~e~~~lqq~lLw~ly-d~g-----hl~~--------YPmALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~n 315 (618)
T PF05053_consen 250 HTDSVELAQLQQDLLWLLY-DMG-----HLAR--------YPMALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYNN 315 (618)
T ss_dssp TEEEHHHHHHHHHHHHHHH-HTT-----TTTT---------HHHHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCTT
T ss_pred ccchHHHHHHHHHHHHHHH-hcC-----chhh--------CchhhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhcC
Confidence 3344555566667776642 122 3331 11467888887653 333556899999999999999998
Q ss_pred CChhHHHHHHHHHHHHHHhhhhhhh
Q 013867 311 HHPKVGVVLTCLALMFRNKAMQEHS 335 (435)
Q Consensus 311 ~HP~va~~L~nLA~ly~~qG~~e~A 335 (435)
.|- --+..+|.-|.++++|.+|
T Consensus 316 ~Hv---YPYty~gg~~yR~~~~~eA 337 (618)
T PF05053_consen 316 HHV---YPYTYLGGYYYRHKRYREA 337 (618)
T ss_dssp --S---HHHHHHHHHHHHTT-HHHH
T ss_pred Ccc---ccceehhhHHHHHHHHHHH
Confidence 884 3466788888888898776
No 361
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=40.01 E-value=4.5e+02 Score=27.36 Aligned_cols=59 Identities=15% Similarity=0.111 Sum_probs=40.6
Q ss_pred HHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHH--HHHHHHHcCCHHHHHHHHHHHHHH
Q 013867 227 GEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFA--LGQLEAHMGNFGDAEEILTRTLTK 303 (435)
Q Consensus 227 a~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~n--La~ly~~qG~y~eAe~l~~rAL~I 303 (435)
+.-+..+++|..|..++...+.-. .+ . . ....+.+ .|--+.+.-+|.+|..+++..+..
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~rl---~~---~----------~--~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRRL---PG---R----------E--EYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhC---Cc---h----------h--hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 445668999999999999877530 11 1 0 0123334 456678899999999999987764
No 362
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.05 E-value=1.3e+02 Score=33.09 Aligned_cols=66 Identities=17% Similarity=0.137 Sum_probs=50.7
Q ss_pred HHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHH
Q 013867 225 SYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGN-FGDAEEILTRTLTK 303 (435)
Q Consensus 225 ~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~-y~eAe~l~~rAL~I 303 (435)
-.|.+++..|+-..|+.+|+.+++-.. .+. ..+.+- | .++.-||.+|.++|. .+||..++.+|-+-
T Consensus 454 L~g~~lR~Lg~~~~a~~~f~i~~~~e~-~~~--~d~w~~-----P-----fA~YElA~l~~~~~g~~~e~~~~L~kAr~~ 520 (546)
T KOG3783|consen 454 LKGVILRNLGDSEVAPKCFKIQVEKES-KRT--EDLWAV-----P-----FALYELALLYWDLGGGLKEARALLLKAREY 520 (546)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHH-hhc--cccccc-----c-----HHHHHHHHHHHhcccChHHHHHHHHHHHhh
Confidence 357788999999999999999997732 221 121221 2 478899999999999 99999999998654
No 363
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=37.85 E-value=2.8e+02 Score=26.87 Aligned_cols=135 Identities=16% Similarity=0.097 Sum_probs=77.0
Q ss_pred hhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhh
Q 013867 233 TRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAH----MGNFGDAEEILTRTLTKTEELF 308 (435)
Q Consensus 233 ~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~----qG~y~eAe~l~~rAL~I~e~~l 308 (435)
..++.+|..+|+++.+- + . ..+.++||.+|.. ..++.+|..+|.+|-..
T Consensus 90 ~~~~~~A~~~~~~~a~~-----g-----~------------~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~----- 142 (292)
T COG0790 90 SRDKTKAADWYRCAAAD-----G-----L------------AEALFNLGLMYANGRGVPLDLVKALKYYEKAAKL----- 142 (292)
T ss_pred cccHHHHHHHHHHHhhc-----c-----c------------HHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHc-----
Confidence 45688899999844432 2 1 1356789998877 44777788887777654
Q ss_pred CCCChhHHHHHHHHHHHHHHhhhhhhhhh--hHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHH----hcCHHHH
Q 013867 309 GSHHPKVGVVLTCLALMFRNKAMQEHSSA--LLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALA----RGGYAEA 382 (435)
Q Consensus 309 G~~HP~va~~L~nLA~ly~~qG~~e~A~~--~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a----~G~yaea 382 (435)
.|+.-+.+..+|+..|..-. .+.+.. ...|..+|++|-+-. |++ ...+++.+|.. .-++.+|
T Consensus 143 --g~~~a~~~~~~l~~~~~~g~-~~~~~~~~~~~A~~~~~~aa~~~------~~~---a~~~lg~~y~~G~Gv~~d~~~A 210 (292)
T COG0790 143 --GNVEAALAMYRLGLAYLSGL-QALAVAYDDKKALYLYRKAAELG------NPD---AQLLLGRMYEKGLGVPRDLKKA 210 (292)
T ss_pred --CChhHHHHHHHHHHHHHcCh-hhhcccHHHHhHHHHHHHHHHhc------CHH---HHHHHHHHHHcCCCCCcCHHHH
Confidence 44443778899999998752 111111 224566666665544 333 33345555532 1266777
Q ss_pred hhHhhhhhhH--HHHHHHHHHHHhccc
Q 013867 383 LSVQQNRKDE--GERMKRWAEAAWRNR 407 (435)
Q Consensus 383 l~~~~~r~~e--ae~~~~~a~~~~~~~ 407 (435)
...+.+-.+- .+.++... .++.++
T Consensus 211 ~~wy~~Aa~~g~~~a~~~~~-~~~~~g 236 (292)
T COG0790 211 FRWYKKAAEQGDGAACYNLG-LMYLNG 236 (292)
T ss_pred HHHHHHHHHCCCHHHHHHHH-HHHhcC
Confidence 7766332222 24444444 555444
No 364
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=37.43 E-value=5.8e+02 Score=27.86 Aligned_cols=91 Identities=16% Similarity=0.120 Sum_probs=50.3
Q ss_pred HHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHH-HHH-HHHHHHHHcCCHHHHHHHHHHHHHHH
Q 013867 227 GEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALA-ATF-ALGQLEAHMGNFGDAEEILTRTLTKT 304 (435)
Q Consensus 227 a~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~-~l~-nLa~ly~~qG~y~eAe~l~~rAL~I~ 304 (435)
|.+.+.+|.|++|.+. |..+.+......++-+- .| -...-.. -+. -.|..+..+|+|+|+..++.|- .
T Consensus 86 ~L~~Y~~k~~~kal~~----ls~w~~~~~~~~~~~Ld-~n--i~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i---~ 155 (549)
T PF07079_consen 86 ALVAYKQKEYRKALQA----LSVWKEQIKGTESPWLD-TN--IQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRI---I 155 (549)
T ss_pred HHHHHHhhhHHHHHHH----HHHHHhhhcccccchhh-hh--HHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHH---H
Confidence 5567789999999864 45544332211121111 01 0000001 122 2477788999999999999875 4
Q ss_pred HHhhCCCChhHHHHHHHHHHHHH
Q 013867 305 EELFGSHHPKVGVVLTCLALMFR 327 (435)
Q Consensus 305 e~~lG~~HP~va~~L~nLA~ly~ 327 (435)
++.|-.+|-=-..++|.+..+|.
T Consensus 156 ~~llkrE~~w~~d~yd~~vlmls 178 (549)
T PF07079_consen 156 ERLLKRECEWNSDMYDRAVLMLS 178 (549)
T ss_pred HHHhhhhhcccHHHHHHHHHHHh
Confidence 55565555555555555444443
No 365
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=37.27 E-value=5.1e+02 Score=27.18 Aligned_cols=101 Identities=13% Similarity=0.023 Sum_probs=66.7
Q ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcC-----CHHHHHHHH
Q 013867 223 ALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMG-----NFGDAEEIL 297 (435)
Q Consensus 223 a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG-----~y~eAe~l~ 297 (435)
.--+|.++.-.|+|+-|...|+-+..-+...+. ..+++.+ .-+..+..+...+- +-++.++++
T Consensus 211 ~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dka---w~~~A~~---------~Em~alsl~~~~~~~~~k~~~~~~~~~l 278 (414)
T PF12739_consen 211 MRRLADLAFMLRDYELAYSTYRLLKKDFKNDKA---WKYLAGA---------QEMAALSLLMQGQSISAKIRKDEIEPYL 278 (414)
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHHHhhchh---HHHHHhH---------HHHHHHHHHhcCCCCccccccccHHHHH
Confidence 334678888899999999999999887642221 1122211 12334444443332 346899999
Q ss_pred HHHHHHHHHhhCC---CChhHHHHHHHHHHHHHHhhhhhhh
Q 013867 298 TRTLTKTEELFGS---HHPKVGVVLTCLALMFRNKAMQEHS 335 (435)
Q Consensus 298 ~rAL~I~e~~lG~---~HP~va~~L~nLA~ly~~qG~~e~A 335 (435)
+.|+..|.+.-.+ ..+....+..-.+.++...|.|.+|
T Consensus 279 e~A~~~Y~~~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a 319 (414)
T PF12739_consen 279 ENAYYTYLKSALPRCSLPYYALRCALLLAELLKSRGGYWEA 319 (414)
T ss_pred HHHHHHHHhhhccccccccchHHHHHHHHHHHHhcCccHHH
Confidence 9999999996443 2234555777778888999998776
No 366
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=36.77 E-value=77 Score=33.51 Aligned_cols=75 Identities=23% Similarity=0.236 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhH
Q 013867 237 LLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALA-ATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKV 315 (435)
Q Consensus 237 ~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~-~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~v 315 (435)
..|..+.++|+.-+++.....++.. =|.++ ++.+||+||.. .=.|=+.+|++|=.|-.+.-..-|-..
T Consensus 328 ~~a~~l~~~Al~yL~kA~d~ddPet---------Wv~vAEa~I~LGNL~d~--eS~eQe~~Y~eAE~iL~kAN~at~GKy 396 (404)
T PF12753_consen 328 KIAQELIKKALEYLKKAQDEDDPET---------WVDVAEAMIDLGNLYDN--ESKEQEKAYKEAEKILKKANKATNGKY 396 (404)
T ss_dssp TTHHHHHHHHHHHHHHHHHS--TTH---------HHHHHHHHHHHHHH-SS--HHH-HHHHHHHHHHHHHHHHHTT----
T ss_pred HHHHHHHHHHHHHHHHhhccCChhH---------HHHHHHHHhhhhccccc--chHHHHHHHHHHHHHHHHHhhccccch
Confidence 3578899999999887665222211 13445 66778877642 334456677777777777666666666
Q ss_pred HHHHHHH
Q 013867 316 GVVLTCL 322 (435)
Q Consensus 316 a~~L~nL 322 (435)
-..|.||
T Consensus 397 ~diLdnL 403 (404)
T PF12753_consen 397 QDILDNL 403 (404)
T ss_dssp HHHHHHH
T ss_pred HHHHhhc
Confidence 5566554
No 367
>PRK10941 hypothetical protein; Provisional
Probab=36.73 E-value=2.3e+02 Score=28.24 Aligned_cols=59 Identities=14% Similarity=0.017 Sum_probs=47.1
Q ss_pred chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhh
Q 013867 269 LEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHS 335 (435)
Q Consensus 269 ~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A 335 (435)
+..+....++||-..|...++|+.|...-++.|. +.|++|. -.--.|.+|.+.|.+..|
T Consensus 176 ~~~il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~-----l~P~dp~---e~RDRGll~~qL~c~~~A 234 (269)
T PRK10941 176 NIEVIRKLLDTLKAALMEEKQMELALRASEALLQ-----FDPEDPY---EIRDRGLIYAQLDCEHVA 234 (269)
T ss_pred HHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH-----hCCCCHH---HHHHHHHHHHHcCCcHHH
Confidence 3445556789999999999999999999999987 5788874 344578889998886655
No 368
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=36.71 E-value=2.3e+02 Score=28.61 Aligned_cols=76 Identities=16% Similarity=0.081 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh-
Q 013867 274 LAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL- 352 (435)
Q Consensus 274 l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~- 352 (435)
..++..|+..+...|+++.+++.+++-++ .||..=..+.-|=..|...|+...| +..|++.-..+
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~--------~dp~~E~~~~~lm~~y~~~g~~~~a------i~~y~~l~~~~~ 218 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIE--------LDPYDEPAYLRLMEAYLVNGRQSAA------IRAYRQLKKTLA 218 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHh--------cCccchHHHHHHHHHHHHcCCchHH------HHHHHHHHHHhh
Confidence 35667899999999999999999998776 5888888888888899999997766 88999988865
Q ss_pred cCCCCCCCchh
Q 013867 353 KAPPLESEGVE 363 (435)
Q Consensus 353 k~~~~~hp~~a 363 (435)
+.+|++.+.+.
T Consensus 219 edlgi~P~~~~ 229 (280)
T COG3629 219 EELGIDPAPEL 229 (280)
T ss_pred hhcCCCccHHH
Confidence 56777766544
No 369
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=36.33 E-value=2e+02 Score=25.12 Aligned_cols=45 Identities=16% Similarity=0.027 Sum_probs=35.1
Q ss_pred HHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013867 84 QGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKV 134 (435)
Q Consensus 84 eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ra 134 (435)
++..+|+...+.. .|.+ +|..+-..|..+..+|++.+|.++|++.
T Consensus 81 ~~~~if~~l~~~~---IG~~---~A~fY~~wA~~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 81 DPREIFKFLYSKG---IGTK---LALFYEEWAEFLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp HHHHHHHHHHHHT---TSTT---BHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcC---ccHH---HHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 6777777766433 3443 6888999999999999999999999875
No 370
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=36.23 E-value=57 Score=34.11 Aligned_cols=66 Identities=6% Similarity=-0.039 Sum_probs=55.3
Q ss_pred hHHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHH
Q 013867 59 NPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAI 128 (435)
Q Consensus 59 ~~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~ 128 (435)
...+.+++..|..+- .++.|++|...|.+|.++..+..|..|..+...++--|..+..-++...+.
T Consensus 38 ~~~~e~lv~~G~~~~----~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~V 103 (400)
T KOG4563|consen 38 EKTLEELVQAGRRAL----CNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQV 103 (400)
T ss_pred HHHHHHHHHhhhHHH----hcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344556666666553 468999999999999999999999999999999999999998888887765
No 371
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=35.53 E-value=37 Score=36.51 Aligned_cols=76 Identities=13% Similarity=0.065 Sum_probs=55.6
Q ss_pred HhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCC
Q 013867 232 ATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSH 311 (435)
Q Consensus 232 ~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~ 311 (435)
.-..|+.|+.+|-+|+++ ++.-+ .-..|-++.+.+.+.|..|..=..+|++..
T Consensus 16 ~~~~fd~avdlysKaI~l---------dpnca-----------~~~anRa~a~lK~e~~~~Al~Da~kaie~d------- 68 (476)
T KOG0376|consen 16 KDKVFDVAVDLYSKAIEL---------DPNCA-----------IYFANRALAHLKVESFGGALHDALKAIELD------- 68 (476)
T ss_pred ccchHHHHHHHHHHHHhc---------CCcce-----------eeechhhhhheeechhhhHHHHHHhhhhcC-------
Confidence 457899999999999988 11111 112466788889999999999988888763
Q ss_pred ChhHHHHHHHHHHHHHHhhhhhhh
Q 013867 312 HPKVGVVLTCLALMFRNKAMQEHS 335 (435)
Q Consensus 312 HP~va~~L~nLA~ly~~qG~~e~A 335 (435)
|...-.+.--|......+++-+|
T Consensus 69 -P~~~K~Y~rrg~a~m~l~~~~~A 91 (476)
T KOG0376|consen 69 -PTYIKAYVRRGTAVMALGEFKKA 91 (476)
T ss_pred -chhhheeeeccHHHHhHHHHHHH
Confidence 77777777777777766665544
No 372
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=35.27 E-value=6.5e+02 Score=27.77 Aligned_cols=99 Identities=17% Similarity=0.301 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013867 221 SAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRT 300 (435)
Q Consensus 221 ~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rA 300 (435)
++-+++-.+-....+.+.|-..|+|-+-. | |.+.+....+..-.+-|+..-|...|++|
T Consensus 175 qaW~sfI~fElRykeieraR~IYerfV~~---------H------------P~v~~wikyarFE~k~g~~~~aR~VyerA 233 (677)
T KOG1915|consen 175 QAWLSFIKFELRYKEIERARSIYERFVLV---------H------------PKVSNWIKYARFEEKHGNVALARSVYERA 233 (677)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhee---------c------------ccHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 34455555555566677777777665433 1 23566778888999999999999999999
Q ss_pred HHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHH
Q 013867 301 LTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEF 351 (435)
Q Consensus 301 L~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I 351 (435)
++ .||.++ ......+..|..=..|..||.| ..+|+=||+-
T Consensus 234 ie----~~~~d~-~~e~lfvaFA~fEe~qkE~ERa------r~iykyAld~ 273 (677)
T KOG1915|consen 234 IE----FLGDDE-EAEILFVAFAEFEERQKEYERA------RFIYKYALDH 273 (677)
T ss_pred HH----HhhhHH-HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHh
Confidence 86 466654 4556667777777788777776 4445544443
No 373
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=35.19 E-value=81 Score=25.26 Aligned_cols=31 Identities=19% Similarity=0.231 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 013867 108 GISLLAMSTLLYESGNYVEAIEKLQKVENFK 138 (435)
Q Consensus 108 A~~l~nLa~ly~~qGky~eA~~l~~ral~i~ 138 (435)
|..+...|.-....|+|++|..+|..+++..
T Consensus 6 A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~~ 36 (75)
T cd02677 6 AAELIRLALEKEEEGDYEAAFEFYRAGVDLL 36 (75)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 4444455555666799999999999986543
No 374
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=34.69 E-value=63 Score=34.25 Aligned_cols=68 Identities=15% Similarity=0.092 Sum_probs=49.3
Q ss_pred HHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCc-CCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013867 64 QMINYALSHARSQKSDESYSQGMLVLEQCLSTQPS-DGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVEN 136 (435)
Q Consensus 64 ~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~-~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~ 136 (435)
++|-+...|. -.|+|..|+.+++.. .+..+ .+..--+.--++++.+|-.|.-.++|.+|+..|...+.
T Consensus 124 SligLlRvh~----LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 124 SLIGLLRVHC----LLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHH----hccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666764 268999999998863 23222 23233344567789999999999999999999998753
No 375
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=33.47 E-value=6e+02 Score=26.82 Aligned_cols=58 Identities=14% Similarity=0.111 Sum_probs=39.0
Q ss_pred HHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHH--HHHHHHcCCHHHHHHHHH
Q 013867 226 YGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFAL--GQLEAHMGNFGDAEEILT 298 (435)
Q Consensus 226 la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nL--a~ly~~qG~y~eAe~l~~ 298 (435)
.+.-+.++++|..|..+|+..+.- ... +. . .+ ....+-+| |-.+.+.-+|++|...++
T Consensus 136 ~~r~l~n~~dy~aA~~~~~~L~~r---~l~----~~-~-----~~--~~~~~~~l~~~y~~WD~fd~~~A~~~L~ 195 (380)
T TIGR02710 136 YARRAINAFDYLFAHARLETLLRR---LLS----AV-N-----HT--FYEAMIKLTRAYLHWDRFEHEEALDYLN 195 (380)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhc---ccC----hh-h-----hh--HHHHHHHHHHHHHHHHccCHHHHHHHHh
Confidence 344677899999999999999865 110 00 0 01 22334444 556688999999999998
No 376
>PF14357 DUF4404: Domain of unknown function (DUF4404)
Probab=33.22 E-value=62 Score=26.59 Aligned_cols=23 Identities=13% Similarity=-0.083 Sum_probs=20.7
Q ss_pred CCCCcchHHHHHHHHHHHHHHcC
Q 013867 100 GQLAESWRGISLLAMSTLLYESG 122 (435)
Q Consensus 100 lG~~Hp~~A~~l~nLa~ly~~qG 122 (435)
|..+||.++.++.++.+.+..+|
T Consensus 62 FE~~HP~l~~~lr~i~~sLa~MG 84 (85)
T PF14357_consen 62 FEASHPKLAGILRNIMDSLANMG 84 (85)
T ss_pred HHHhCCcHHHHHHHHHHHHHHCC
Confidence 34789999999999999999887
No 377
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.20 E-value=3.3e+02 Score=31.66 Aligned_cols=39 Identities=18% Similarity=0.198 Sum_probs=32.6
Q ss_pred CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhh
Q 013867 103 AESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSI 141 (435)
Q Consensus 103 ~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~ 141 (435)
+-..++..+-.-|.-++.+|+|++|..-|-+++...+.+
T Consensus 363 d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s 401 (933)
T KOG2114|consen 363 DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPS 401 (933)
T ss_pred CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChH
Confidence 334688889999999999999999999999988765544
No 378
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=32.58 E-value=71 Score=27.32 Aligned_cols=26 Identities=23% Similarity=0.114 Sum_probs=22.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013867 277 TFALGQLEAHMGNFGDAEEILTRTLT 302 (435)
Q Consensus 277 l~nLa~ly~~qG~y~eAe~l~~rAL~ 302 (435)
+..|+.+|...|.+++|.+++.+--.
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 45799999999999999999987655
No 379
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=31.93 E-value=75 Score=25.87 Aligned_cols=33 Identities=18% Similarity=0.120 Sum_probs=26.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCh
Q 013867 281 GQLEAHMGNFGDAEEILTRTLTKTEELFGSHHP 313 (435)
Q Consensus 281 a~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP 313 (435)
|.-+...|+.++|..+|++++.+-++.+.-.-|
T Consensus 15 aL~~dE~g~~e~Al~~Y~~gi~~l~eg~ai~~~ 47 (79)
T cd02679 15 ALRADEWGDKEQALAHYRKGLRELEEGIAVPVP 47 (79)
T ss_pred HhhhhhcCCHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 333444588999999999999999999987775
No 380
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=31.71 E-value=6.7e+02 Score=26.85 Aligned_cols=119 Identities=19% Similarity=0.217 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhchHHHHHH----------------HHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHH
Q 013867 223 ALSYGEYLHATRNFLLAKKF----------------YQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAH 286 (435)
Q Consensus 223 a~~la~~~~~~G~y~eAe~l----------------y~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~ 286 (435)
..+.+.++.++|-++.|..+ .+-|++| .+...++ .....||.+...
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D~~~rFeLAl~lg~L~~A~~~---a~~~~~~---------------~~W~~Lg~~AL~ 359 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTDPDHRFELALQLGNLDIALEI---AKELDDP---------------EKWKQLGDEALR 359 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS-HHHHHHHHHHCT-HHHHHHH---CCCCSTH---------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHhhcCChHHHhHHHHhcCCHHHHHHH---HHhcCcH---------------HHHHHHHHHHHH
Q ss_pred cCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhh
Q 013867 287 MGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKV 366 (435)
Q Consensus 287 qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l 366 (435)
||+++-||..|+++=.. ..|..+|...|+ ..-.++..++.+. ....
T Consensus 360 ~g~~~lAe~c~~k~~d~----------------~~L~lLy~~~g~----------~~~L~kl~~~a~~--------~~~~ 405 (443)
T PF04053_consen 360 QGNIELAEECYQKAKDF----------------SGLLLLYSSTGD----------REKLSKLAKIAEE--------RGDI 405 (443)
T ss_dssp TTBHHHHHHHHHHCT-H----------------HHHHHHHHHCT-----------HHHHHHHHHHHHH--------TT-H
T ss_pred cCCHHHHHHHHHhhcCc----------------cccHHHHHHhCC----------HHHHHHHHHHHHH--------ccCH
Q ss_pred ccHHHHHHHhcCHHHHhhHh--hhhhhHH
Q 013867 367 DRTDIVALARGGYAEALSVQ--QNRKDEG 393 (435)
Q Consensus 367 ~nla~~~~a~G~yaeal~~~--~~r~~ea 393 (435)
|-.-.+++-.|++++-..+- .+|..||
T Consensus 406 n~af~~~~~lgd~~~cv~lL~~~~~~~~A 434 (443)
T PF04053_consen 406 NIAFQAALLLGDVEECVDLLIETGRLPEA 434 (443)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHcCCchHH
No 381
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=31.38 E-value=4.5e+02 Score=31.06 Aligned_cols=63 Identities=13% Similarity=0.260 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHH
Q 013867 241 KFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLT 320 (435)
Q Consensus 241 ~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~ 320 (435)
+.|.+||..+++-.+ ..|+ |= -+.+=|.+|+.+|+|+|=...|+-||.-| ++||.+...-.
T Consensus 533 ~~~~~~~~~~~~~~~-----~~~~----~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 593 (932)
T PRK13184 533 RDFTQALSEFSYLHG-----GVGA----PL-----EYLGKALVYQRLGEYNEEIKSLLLALKRY-----SQHPEISRLRD 593 (932)
T ss_pred HHHHHHHHHHHHhcC-----CCCC----ch-----HHHhHHHHHHHhhhHHHHHHHHHHHHHhc-----CCCCccHHHHH
Confidence 788889998875433 4442 21 13456789999999999999999998776 68998766544
Q ss_pred HH
Q 013867 321 CL 322 (435)
Q Consensus 321 nL 322 (435)
.+
T Consensus 594 ~~ 595 (932)
T PRK13184 594 HL 595 (932)
T ss_pred HH
Confidence 43
No 382
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.98 E-value=8.5e+02 Score=29.53 Aligned_cols=26 Identities=12% Similarity=0.061 Sum_probs=22.1
Q ss_pred HHHHHHHHHhhchHHHHHHHHHHHHH
Q 013867 224 LSYGEYLHATRNFLLAKKFYQKVIEV 249 (435)
Q Consensus 224 ~~la~~~~~~G~y~eAe~ly~rAL~I 249 (435)
-.+-++|...|-|+|=+.|++-+|-.
T Consensus 1283 eeli~~Yq~rGyFeElIsl~Ea~LGL 1308 (1666)
T KOG0985|consen 1283 EELIEYYQDRGYFEELISLLEAGLGL 1308 (1666)
T ss_pred HHHHHHHHhcCcHHHHHHHHHhhhch
Confidence 34567899999999999999999877
No 383
>PF08969 USP8_dimer: USP8 dimerisation domain; InterPro: IPR015063 This domain is predominantly found in the amino terminal region of Ubiquitin carboxyl-terminal hydrolase 8 (USP8). It has no known function. ; PDB: 2XZE_B 2A9U_A.
Probab=29.93 E-value=1.1e+02 Score=26.08 Aligned_cols=38 Identities=18% Similarity=0.071 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhH
Q 013867 276 ATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKV 315 (435)
Q Consensus 276 ~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~v 315 (435)
.+..-|..|...|+.+.|=-+|.|.+.+. ..=+.||+.
T Consensus 40 ~l~~~A~~~~~egd~E~AYvl~~R~~~L~--~ki~~Hpdy 77 (115)
T PF08969_consen 40 KLLREAEEYRQEGDEEQAYVLYMRYLTLV--EKIPKHPDY 77 (115)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH--CCHCCSCCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHH--HHhhcCccc
Confidence 45667999999999999999999999999 334789974
No 384
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=29.79 E-value=2.9e+02 Score=28.48 Aligned_cols=66 Identities=17% Similarity=0.027 Sum_probs=52.3
Q ss_pred HHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 013867 227 GEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEE 306 (435)
Q Consensus 227 a~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~ 306 (435)
+..|..-|+|.+|.+|.+|++..- .+. + ...-.|=++|..+|+--.|...|+|--...++
T Consensus 286 a~~yle~g~~neAi~l~qr~ltld----------pL~------e----~~nk~lm~~la~~gD~is~~khyerya~vlea 345 (361)
T COG3947 286 ARAYLEAGKPNEAIQLHQRALTLD----------PLS------E----QDNKGLMASLATLGDEISAIKHYERYAEVLEA 345 (361)
T ss_pred HHHHHHcCChHHHHHHHHHHhhcC----------hhh------h----HHHHHHHHHHHHhccchhhhhHHHHHHHHHHH
Confidence 456778999999999999999871 111 0 12235777889999999999999999999999
Q ss_pred hhCCCC
Q 013867 307 LFGSHH 312 (435)
Q Consensus 307 ~lG~~H 312 (435)
-+|-+-
T Consensus 346 elgi~v 351 (361)
T COG3947 346 ELGIDV 351 (361)
T ss_pred HhCCCc
Confidence 999754
No 385
>cd09034 BRO1_Alix_like Protein-interacting Bro1-like domain of mammalian Alix and related domains. This superfamily includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1 and Rim20 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to
Probab=29.75 E-value=5.9e+02 Score=25.62 Aligned_cols=36 Identities=17% Similarity=0.047 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHHHh----------hchHHHHHHHHHHHHHHHHhcc
Q 013867 220 GSAALSYGEYLHAT----------RNFLLAKKFYQKVIEVLAEQKD 255 (435)
Q Consensus 220 ~~~a~~la~~~~~~----------G~y~eAe~ly~rAL~I~~~~~~ 255 (435)
.++..|+|.+|..+ ....+|-.++++|-.+++-...
T Consensus 111 ~~vLfn~aa~~s~~a~~~~~~~~~~~~k~A~~~fq~AAG~F~~l~~ 156 (345)
T cd09034 111 LSILFNLAALASQLANEKLITGSEEDLKQAIKSLQKAAGYFEYLKE 156 (345)
T ss_pred HHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666655432 4577899999999998876443
No 386
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=29.37 E-value=6.9e+02 Score=26.23 Aligned_cols=100 Identities=19% Similarity=0.262 Sum_probs=71.9
Q ss_pred HHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhh
Q 013867 229 YLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELF 308 (435)
Q Consensus 229 ~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~l 308 (435)
+....++.++|..+.++..+-..+.+. |+. ..-.....|.++-.+|+.+++++++...-.+-....
T Consensus 84 ~~~~~~D~~~al~~Le~i~~~~~~~~e-------------~~a-v~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~ 149 (380)
T KOG2908|consen 84 VSEQISDKDEALEFLEKIIEKLKEYKE-------------PDA-VIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLD 149 (380)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHhhcc-------------chh-HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhccc
Confidence 345567899999999998887544332 221 223456788899999999999999998888776655
Q ss_pred CCCChhHHHHHHHHHHHH-HHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 309 GSHHPKVGVVLTCLALMF-RNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 309 G~~HP~va~~L~nLA~ly-~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
| --|.|-+.++.++.-| +..|++. ..|+-||...
T Consensus 150 ~-v~~~Vh~~fY~lssqYyk~~~d~a---------~yYr~~L~YL 184 (380)
T KOG2908|consen 150 G-VTSNVHSSFYSLSSQYYKKIGDFA---------SYYRHALLYL 184 (380)
T ss_pred C-CChhhhhhHHHHHHHHHHHHHhHH---------HHHHHHHHHh
Confidence 4 3456888888888766 5567664 5577777666
No 387
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=29.16 E-value=7.5e+02 Score=26.64 Aligned_cols=133 Identities=15% Similarity=0.144 Sum_probs=91.6
Q ss_pred HHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 013867 228 EYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEEL 307 (435)
Q Consensus 228 ~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~ 307 (435)
.++..+.+|.+|..+-...+.-..-.. ... .|-+..-.+.-+...|...|+...=..++..-|.+ ++
T Consensus 134 Lfl~d~K~~kea~~~~~~~l~~i~~~n----rRt-------lD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrt--At 200 (493)
T KOG2581|consen 134 LFLIDQKEYKEADKISDALLASISIQN----RRT-------LDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRT--AT 200 (493)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHhcc----hhh-------HHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHH--hh
Confidence 356789999999988877665432111 111 12122224567788899999987777777665544 67
Q ss_pred hCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh-cCCCCCCC---chhhhhccHHHHHHHhcCHHHHh
Q 013867 308 FGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL-KAPPLESE---GVETKVDRTDIVALARGGYAEAL 383 (435)
Q Consensus 308 lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~-k~~~~~hp---~~a~~l~nla~~~~a~G~yaeal 383 (435)
|+.+--..++.+|+|=..|-.-+-|++| =... |..-|+.. .-+.=+..++.+-.-|++|.+|.
T Consensus 201 Lrhd~e~qavLiN~LLr~yL~n~lydqa-------------~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~ 267 (493)
T KOG2581|consen 201 LRHDEEGQAVLINLLLRNYLHNKLYDQA-------------DKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSAL 267 (493)
T ss_pred hcCcchhHHHHHHHHHHHHhhhHHHHHH-------------HHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHH
Confidence 9999999999999999999886655544 4444 54433322 35667778888888999999998
Q ss_pred hHh
Q 013867 384 SVQ 386 (435)
Q Consensus 384 ~~~ 386 (435)
...
T Consensus 268 ~~~ 270 (493)
T KOG2581|consen 268 EYF 270 (493)
T ss_pred HHH
Confidence 864
No 388
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=28.64 E-value=1.9e+02 Score=34.76 Aligned_cols=70 Identities=14% Similarity=0.045 Sum_probs=37.5
Q ss_pred HHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 013867 227 GEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAAT-FALGQLEAHMGNFGDAEEILTRTLTKT 304 (435)
Q Consensus 227 a~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l-~nLa~ly~~qG~y~eAe~l~~rAL~I~ 304 (435)
|.+|..-|+.++|..-|+.+..-.+... +++ -+.++...+..+ -.|...+..+|++-||-.+.+..+.-.
T Consensus 959 al~Ye~~GklekAl~a~~~~~dWr~~l~-------~a~-ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~ 1029 (1265)
T KOG1920|consen 959 ALMYERCGKLEKALKAYKECGDWREALS-------LAA-QLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDP 1029 (1265)
T ss_pred HHHHHHhccHHHHHHHHHHhccHHHHHH-------HHH-hhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCH
Confidence 3456778888888888865543322100 000 000111122222 356777788888888877766655433
No 389
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=28.54 E-value=62 Score=32.11 Aligned_cols=54 Identities=22% Similarity=0.312 Sum_probs=43.6
Q ss_pred HHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 013867 231 HATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKT 304 (435)
Q Consensus 231 ~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~ 304 (435)
...|+++-|-++|.|||+.. |+ -+.....+|.-..+.|+++.|-.-|++.|+|.
T Consensus 6 ~~~~D~~aaaely~qal~la------------------p~--w~~gwfR~g~~~ekag~~daAa~a~~~~L~ld 59 (287)
T COG4976 6 AESGDAEAAAELYNQALELA------------------PE--WAAGWFRLGEYTEKAGEFDAAAAAYEEVLELD 59 (287)
T ss_pred cccCChHHHHHHHHHHhhcC------------------ch--hhhhhhhcchhhhhcccHHHHHHHHHHHHcCC
Confidence 45789999999999999882 11 12346788988899999999999999999873
No 390
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=28.46 E-value=5.1e+02 Score=26.13 Aligned_cols=75 Identities=17% Similarity=0.030 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013867 221 SAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRT 300 (435)
Q Consensus 221 ~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rA 300 (435)
.+...+++.+-..|+++.+++..++-++. +|.- + ....-|=..|...|+...|+..|++.
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~---------dp~~-------E----~~~~~lm~~y~~~g~~~~ai~~y~~l 213 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIEL---------DPYD-------E----PAYLRLMEAYLVNGRQSAAIRAYRQL 213 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhc---------Cccc-------h----HHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 34556788889999999999999998887 1121 1 12345666899999999999999999
Q ss_pred HHHHHHhhCCCChhH
Q 013867 301 LTKTEELFGSHHPKV 315 (435)
Q Consensus 301 L~I~e~~lG~~HP~v 315 (435)
=....+-+|.+=+.+
T Consensus 214 ~~~~~edlgi~P~~~ 228 (280)
T COG3629 214 KKTLAEELGIDPAPE 228 (280)
T ss_pred HHHhhhhcCCCccHH
Confidence 888888888766544
No 391
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=28.15 E-value=3.2e+02 Score=28.13 Aligned_cols=28 Identities=25% Similarity=0.248 Sum_probs=22.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 013867 111 LLAMSTLLYESGNYVEAIEKLQKVENFK 138 (435)
Q Consensus 111 l~nLa~ly~~qGky~eA~~l~~ral~i~ 138 (435)
++--+.-|...|+|.+|+++.++++++.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld 309 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD 309 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC
Confidence 3444566889999999999999997654
No 392
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=27.91 E-value=63 Score=27.65 Aligned_cols=24 Identities=25% Similarity=0.274 Sum_probs=21.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Q 013867 111 LLAMSTLLYESGNYVEAIEKLQKV 134 (435)
Q Consensus 111 l~nLa~ly~~qGky~eA~~l~~ra 134 (435)
+..|+.+|..+|.+++|.+++++-
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l 65 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKL 65 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHH
Confidence 568999999999999999999863
No 393
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.84 E-value=1.2e+03 Score=28.44 Aligned_cols=226 Identities=17% Similarity=0.198 Sum_probs=120.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHH-HHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhh
Q 013867 111 LLAMSTLLYESGNYVEAIEKLQKVENFKNSILG-VRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGA 189 (435)
Q Consensus 111 l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~-i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaea 189 (435)
...||....++|...+|++-|-+|-+-. +-+. |++++ +.|.++. .-+.+.+.++..+..|-|.+-
T Consensus 1107 WsqlakAQL~~~~v~dAieSyikadDps-~y~eVi~~a~---------~~~~~ed----Lv~yL~MaRkk~~E~~id~eL 1172 (1666)
T KOG0985|consen 1107 WSQLAKAQLQGGLVKDAIESYIKADDPS-NYLEVIDVAS---------RTGKYED----LVKYLLMARKKVREPYIDSEL 1172 (1666)
T ss_pred HHHHHHHHHhcCchHHHHHHHHhcCCcH-HHHHHHHHHH---------hcCcHHH----HHHHHHHHHHhhcCccchHHH
Confidence 4567888889999999999998773211 0011 11111 2233321 113334444444334555555
Q ss_pred HHHHHHHHHH--HHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccc
Q 013867 190 VNSRANAVKG--LVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNM 267 (435)
Q Consensus 190 l~~~a~Ai~~--~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~ 267 (435)
++.+++..+. +.+.+.| |++.++ ...|.-+...|.|+.|.-+|--.
T Consensus 1173 i~AyAkt~rl~elE~fi~g----------pN~A~i-~~vGdrcf~~~~y~aAkl~y~~v--------------------- 1220 (1666)
T KOG0985|consen 1173 IFAYAKTNRLTELEEFIAG----------PNVANI-QQVGDRCFEEKMYEAAKLLYSNV--------------------- 1220 (1666)
T ss_pred HHHHHHhchHHHHHHHhcC----------CCchhH-HHHhHHHhhhhhhHHHHHHHHHh---------------------
Confidence 5555554332 2222222 222221 22344456678888877766422
Q ss_pred cchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--H---------------HhhCCCChhHHHHHHHHHHHHHHhh
Q 013867 268 ALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKT--E---------------ELFGSHHPKVGVVLTCLALMFRNKA 330 (435)
Q Consensus 268 ~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~--e---------------~~lG~~HP~va~~L~nLA~ly~~qG 330 (435)
.....||..+...|.|.-|-..-++|-.+. . +..|-+----|.-|.-|-..|+..|
T Consensus 1221 -------SN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rG 1293 (1666)
T KOG0985|consen 1221 -------SNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRG 1293 (1666)
T ss_pred -------hhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcC
Confidence 123457777777888888877777765542 1 2234443334556777778888877
Q ss_pred hhhhhhhhHHHHHHHHHHHHHhcC-CCCCCCchhhhhccHHHHHHHhcCHHHH---hhHh------hhhhhHHHHHHHHH
Q 013867 331 MQEHSSALLIQEGLYRRALEFLKA-PPLESEGVETKVDRTDIVALARGGYAEA---LSVQ------QNRKDEGERMKRWA 400 (435)
Q Consensus 331 ~~e~A~~~~~Ae~Ly~rAL~I~k~-~~~~hp~~a~~l~nla~~~~a~G~yaea---l~~~------~~r~~eae~~~~~a 400 (435)
-+++ -+..+++ +|++-.+.. +..-++++|.. =+++.. +.++ ++-...+|.++-|+
T Consensus 1294 yFeE-------------lIsl~Ea~LGLERAHMg-mfTELaiLYsk-ykp~km~EHl~LFwsRvNipKviRA~eqahlW~ 1358 (1666)
T KOG0985|consen 1294 YFEE-------------LISLLEAGLGLERAHMG-MFTELAILYSK-YKPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWS 1358 (1666)
T ss_pred cHHH-------------HHHHHHhhhchhHHHHH-HHHHHHHHHHh-cCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 6544 3444442 455544433 44557777742 233322 2233 33344568888888
Q ss_pred HHHh
Q 013867 401 EAAW 404 (435)
Q Consensus 401 ~~~~ 404 (435)
+-.|
T Consensus 1359 Elvf 1362 (1666)
T KOG0985|consen 1359 ELVF 1362 (1666)
T ss_pred HHHH
Confidence 8776
No 394
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=27.73 E-value=4.2e+02 Score=32.04 Aligned_cols=101 Identities=11% Similarity=0.129 Sum_probs=56.9
Q ss_pred CCCChHHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCC--CCcchHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013867 55 GLNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQ--LAESWRGISLLAMSTLLYESGNYVEAIEKLQ 132 (435)
Q Consensus 55 g~~~~~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG--~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ 132 (435)
|+++=+....+|. .-|-|++|+.+|.-..+.++..+- .+|..--.-+..-|..|..-|+.++|++.|+
T Consensus 907 ~~~~~~e~~n~I~----------kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~GklekAl~a~~ 976 (1265)
T KOG1920|consen 907 GETYFPECKNYIK----------KHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKLEKALKAYK 976 (1265)
T ss_pred CccccHHHHHHHH----------hcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccHHHHHHHHH
Confidence 5555555555554 235688888777655544443321 3333333334556677888889999888886
Q ss_pred HHHHhhhhh-HHH--------HHHHHHHHHHHHHhcCCCcch
Q 013867 133 KVENFKNSI-LGV--------RVAAMEALAGLYLQLGQDDTS 165 (435)
Q Consensus 133 ral~i~e~~-L~i--------~vaale~L~g~~~~~g~~~~A 165 (435)
.+.+-++-. ++. -+...+.|.+...++|++..|
T Consensus 977 ~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eA 1018 (1265)
T KOG1920|consen 977 ECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEA 1018 (1265)
T ss_pred HhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhH
Confidence 654433211 111 122335677777777777544
No 395
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.28 E-value=9.2e+02 Score=27.10 Aligned_cols=158 Identities=22% Similarity=0.220 Sum_probs=93.5
Q ss_pred hhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCC-
Q 013867 233 TRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSH- 311 (435)
Q Consensus 233 ~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~- 311 (435)
..-|++|...|.-|.+++. .+..+----.+|-| +.++.-++....-||+.+-|-.+.+|+|=..+..+-|.
T Consensus 251 s~sYeqaq~~F~~av~~~d------~n~v~~lL~ssPYH--vdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F 322 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHD------PNNVLILLISSPYH--VDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNF 322 (665)
T ss_pred chHHHHHHHHHHHHHhhcC------CcceeeeeccCCcc--hhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccc
Confidence 3568899999998888841 11111100012433 47888999999999999999999999999999987543
Q ss_pred ------------ChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCC-CCCCC-chhhhhccHHHHHHHhc
Q 013867 312 ------------HPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAP-PLESE-GVETKVDRTDIVALARG 377 (435)
Q Consensus 312 ------------HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~-~~~hp-~~a~~l~nla~~~~a~G 377 (435)
||.--.-+ |+ +|+.+-. +...+..+.|++..|.+ .+|.- |-.-++.-+++.++..-
T Consensus 323 ~~~sg~cRL~y~~~eNR~Fy--L~-l~r~m~~-------l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrar 392 (665)
T KOG2422|consen 323 IPFSGNCRLPYIYPENRQFY--LA-LFRYMQS-------LAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAR 392 (665)
T ss_pred ccccccccCcccchhhHHHH--HH-HHHHHHH-------HHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHH
Confidence 22211111 11 2222221 23468899999999853 33321 22335555777777767
Q ss_pred CHHHHhhHhhhhhhHHHHHHHHHHHHhcccchhHHHH
Q 013867 378 GYAEALSVQQNRKDEGERMKRWAEAAWRNRRVSLAEA 414 (435)
Q Consensus 378 ~yaeal~~~~~r~~eae~~~~~a~~~~~~~r~~l~~~ 414 (435)
+|+=.+.+. .+.|.+.+ ...|.|=-+|+|-|
T Consensus 393 eYqwiI~~~----~~~e~~n~--l~~~PN~~yS~AlA 423 (665)
T KOG2422|consen 393 EYQWIIELS----NEPENMNK--LSQLPNFGYSLALA 423 (665)
T ss_pred hHHHHHHHH----HHHHhhcc--HhhcCCchHHHHHH
Confidence 787555544 13344432 23344444444444
No 396
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=27.03 E-value=3.6e+02 Score=24.94 Aligned_cols=64 Identities=14% Similarity=0.029 Sum_probs=44.4
Q ss_pred hHHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013867 59 NPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKV 134 (435)
Q Consensus 59 ~~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ra 134 (435)
+.+...|++....-.+ .+..++++.++.-.--.+ |.....-.--|.++..+|+|++|+.+++..
T Consensus 7 ~~iv~gLie~~~~al~----~~~~~D~e~lL~ALrvLR--------P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l 70 (160)
T PF09613_consen 7 DEIVGGLIEVLSVALR----LGDPDDAEALLDALRVLR--------PEFPELDLFDGWLHIVRGDWDDALRLLREL 70 (160)
T ss_pred HHHHHHHHHHHHHHHc----cCChHHHHHHHHHHHHhC--------CCchHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3455666666655432 347888888887543222 445555556788999999999999999875
No 397
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=26.67 E-value=99 Score=27.02 Aligned_cols=27 Identities=30% Similarity=0.343 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHH
Q 013867 221 SAALSYGEYLHATRNFLLAKKFYQKVI 247 (435)
Q Consensus 221 ~~a~~la~~~~~~G~y~eAe~ly~rAL 247 (435)
.-...+|.++..+|+|++|...|+++|
T Consensus 100 ~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 100 LFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 445667899999999999999999875
No 398
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=25.94 E-value=1e+02 Score=19.64 Aligned_cols=31 Identities=3% Similarity=-0.023 Sum_probs=20.8
Q ss_pred HHHHHHHHhhhccCChhcHHHHHHHHHHHHh
Q 013867 64 QMINYALSHARSQKSDESYSQGMLVLEQCLS 94 (435)
Q Consensus 64 ~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~ 94 (435)
.+.++|..+.......-++.+|..+|+++-.
T Consensus 3 a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~ 33 (36)
T smart00671 3 AQYNLGQMYEYGLGVKKDLEKALEYYKKAAE 33 (36)
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHHHHHH
Confidence 4667777774322223378999999999864
No 399
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=25.91 E-value=9e+02 Score=26.46 Aligned_cols=66 Identities=8% Similarity=0.053 Sum_probs=42.0
Q ss_pred HHHHHHHHhhhc-cCChhcHHHHHHHHHHHHhccCc--CCCCCcchHHHHHHHHHHHHHHcC-----CHHHHHHHHHHH
Q 013867 64 QMINYALSHARS-QKSDESYSQGMLVLEQCLSTQPS--DGQLAESWRGISLLAMSTLLYESG-----NYVEAIEKLQKV 134 (435)
Q Consensus 64 ~m~~~a~~~~r~-~~s~G~Y~eA~~~~eqaL~i~~~--~lG~~Hp~~A~~l~nLa~ly~~qG-----ky~eA~~l~~ra 134 (435)
.+..++.++-.. .....+.++|+.+|+.+.+-..+ ..| ....++.||.+|.+.. ++..|..+|.++
T Consensus 246 a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~-----~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~a 319 (552)
T KOG1550|consen 246 AQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG-----LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKA 319 (552)
T ss_pred HHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc-----CCccccHHHHHHhcCCCCccccHHHHHHHHHHH
Confidence 344555555322 22345788999999999872110 111 1225778999988854 788899999887
No 400
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=25.00 E-value=1.4e+02 Score=19.41 Aligned_cols=32 Identities=9% Similarity=0.069 Sum_probs=20.0
Q ss_pred HHHHHHH--HHhhhcc-CChhcHHHHHHHHHHHHh
Q 013867 63 LQMINYA--LSHARSQ-KSDESYSQGMLVLEQCLS 94 (435)
Q Consensus 63 ~~m~~~a--~~~~r~~-~s~G~Y~eA~~~~eqaL~ 94 (435)
..|.++| ..+.... ...-++++|+.+|+++-+
T Consensus 2 ~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~ 36 (39)
T PF08238_consen 2 EAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAE 36 (39)
T ss_dssp HHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhhhhccCCccccccchHHHHHHHHH
Confidence 4566677 5332221 123379999999999864
No 401
>KOG2880 consensus SMAD6 interacting protein AMSH, contains JAB/MPN/Mov34 domain [Signal transduction mechanisms]
Probab=24.58 E-value=3.4e+02 Score=28.52 Aligned_cols=71 Identities=15% Similarity=0.087 Sum_probs=53.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 277 TFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 277 l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
+..+|.+|..-|++..|--||-|-...+-+.+ ++|||.+..--+.=.++..-. +++ +...++|+.+-+.-+
T Consensus 38 i~rmA~VY~~EgN~enafvLy~ry~tLfiEki-pkHrDy~s~k~ek~d~~~klk--~~~--~p~~deL~~~ll~rY 108 (424)
T KOG2880|consen 38 ILRMANVYLEEGNVENAFVLYLRYITLFIEKI-PKHRDYRSVKPEKEDIRKKLK--EEA--FPRIDELKAKLLKRY 108 (424)
T ss_pred HHHHHHHHHhcCCcchhhhHHHHHHHHHHHhc-ccCcchhhhchhHHHHHHHHH--HHh--hhhHHHHHHHHHHHH
Confidence 45789999999999999999999999988765 789999977777766665543 333 444455665555554
No 402
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=24.41 E-value=5.5e+02 Score=28.63 Aligned_cols=69 Identities=9% Similarity=-0.004 Sum_probs=42.2
Q ss_pred cchhHHHHHHHHHHH--HhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHH
Q 013867 217 GCTGSAALSYGEYLH--ATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAE 294 (435)
Q Consensus 217 ~~~~~~a~~la~~~~--~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe 294 (435)
..++.++.+||.+-. .+..-..++.+|++|+...+..-+ +++. -.+.-+|.-|+..++|.||.
T Consensus 274 ~~YPmALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~--n~Hv-------------YPYty~gg~~yR~~~~~eA~ 338 (618)
T PF05053_consen 274 ARYPMALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYN--NHHV-------------YPYTYLGGYYYRHKRYREAL 338 (618)
T ss_dssp TT-HHHHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCT--T--S-------------HHHHHHHHHHHHTT-HHHHH
T ss_pred hhCchhhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhc--CCcc-------------ccceehhhHHHHHHHHHHHH
Confidence 346678888887643 344567789999999999654332 2211 23457888899999999986
Q ss_pred HHHHHH
Q 013867 295 EILTRT 300 (435)
Q Consensus 295 ~l~~rA 300 (435)
..+-.|
T Consensus 339 ~~Wa~a 344 (618)
T PF05053_consen 339 RSWAEA 344 (618)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554443
No 403
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=24.39 E-value=3.8e+02 Score=24.78 Aligned_cols=85 Identities=13% Similarity=0.126 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 273 ALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 273 ~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
.++.|..+..+-...++.++++.++.- -+++-|++|.+ -..-|.++..+|++++| +.+++...+
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~A-----LrvLRP~~~e~---~~~~~~l~i~r~~w~dA------~rlLr~l~~-- 72 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDA-----LRVLRPEFPEL---DLFDGWLHIVRGDWDDA------LRLLRELEE-- 72 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHH-----HHHhCCCchHH---HHHHHHHHHHhCCHHHH------HHHHHHHhc--
Confidence 456788888888889999999998863 34455555554 45567888899997766 677766321
Q ss_pred cCCCCCCCchhhhhccHHHHHHHhcC
Q 013867 353 KAPPLESEGVETKVDRTDIVALARGG 378 (435)
Q Consensus 353 k~~~~~hp~~a~~l~nla~~~~a~G~ 378 (435)
-++..| .++.| +++++..+|+
T Consensus 73 --~~~~~p-~~kAL--lA~CL~~~~D 93 (160)
T PF09613_consen 73 --RAPGFP-YAKAL--LALCLYALGD 93 (160)
T ss_pred --cCCCCh-HHHHH--HHHHHHHcCC
Confidence 123333 34444 5666666664
No 404
>KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=24.02 E-value=9.4e+02 Score=26.04 Aligned_cols=180 Identities=17% Similarity=0.126 Sum_probs=99.2
Q ss_pred ChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHH--HHHHHHH
Q 013867 78 SDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAA--MEALAGL 155 (435)
Q Consensus 78 s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaa--le~L~g~ 155 (435)
++.+|.+|-.++.+.+-... .|.+...++.++..++.++.+.|.--.+.++.-+++....+.--...++ .-+++-.
T Consensus 285 A~~q~s~A~~ll~kL~vqc~--k~~~~em~~sVLL~~ae~~~~g~~a~l~lplaL~~~~~~sey~ldyl~a~~~L~LAl~ 362 (482)
T KOG4322|consen 285 ADEQVSYAYALLNKLMVQCD--KGCNEEMLHSVLLTIAEARESGDTACLNLPLALMFEFKRSEYSLDYLEANENLDLALE 362 (482)
T ss_pred HHHHHHHHHHHHHHHHHhcc--cchhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHhccchhhhhchHHHHHH
Confidence 45677778777777765443 4566677888888899999888888888888877654432210000000 0012222
Q ss_pred HHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhc
Q 013867 156 YLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRN 235 (435)
Q Consensus 156 ~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~ 235 (435)
.+..|-...|.++...+..+...++. +..+++++ -.+-+|+...+.+. ..-.
T Consensus 363 ~L~LG~pk~Al~lLh~a~h~Il~~Gg--------L~drara~---------------fvfanC~lA~a~s~-----~~e~ 414 (482)
T KOG4322|consen 363 HLALGSPKAALPLLHTAVHLILVQGG--------LDDRARAI---------------FVFANCTLAFALSC-----ANES 414 (482)
T ss_pred HHHcCChHHHHHHHHhhhhHHHhccc--------hhhcceeE---------------EEEEeeeecchhhh-----hhhh
Confidence 22233333344444444333322221 11122111 12335554444443 4567
Q ss_pred hHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHH---HHHHHHHHH
Q 013867 236 FLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGD---AEEILTRTL 301 (435)
Q Consensus 236 y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~e---Ae~l~~rAL 301 (435)
++.+....++|-.|+.+ .+ | .+..+....-++.+|.+.||-+| +-.+|+|+.
T Consensus 415 ld~~~~~L~~A~~~f~k-L~---------~----he~ildv~yf~A~~yn~lGd~~eRn~~AslFrk~~ 469 (482)
T KOG4322|consen 415 LDGFPRYLDLAQSIFYK-LG---------C----HEKILDVTYFSAYQYNHLGDSPERNLLASLFRKAW 469 (482)
T ss_pred HHhhHHHHHHHHHHHHH-cc---------c----hHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHH
Confidence 88888888888888753 22 0 11123455678999999999876 344555543
No 405
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=23.81 E-value=4e+02 Score=24.35 Aligned_cols=60 Identities=20% Similarity=0.163 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChh-HHHHHHHHHHHHHHhhhhhhhh
Q 013867 273 ALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPK-VGVVLTCLALMFRNKAMQEHSS 336 (435)
Q Consensus 273 ~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~-va~~L~nLA~ly~~qG~~e~A~ 336 (435)
+..+..|||-.+...-+-++ -++-+.|.|+.+-.+||+ --..+.-||.-+.+-+.|++|.
T Consensus 31 s~~s~f~lAwaLV~S~~~~d----v~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~ 91 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTED----VQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSL 91 (149)
T ss_pred hHHHHHHHHHHHHcccchHH----HHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHH
Confidence 55678888888777665543 467788888888888887 5778899999999999988873
No 406
>KOG1811 consensus Predicted Zn2+-binding protein, contains FYVE domain [General function prediction only]
Probab=23.29 E-value=2.1e+02 Score=32.27 Aligned_cols=66 Identities=24% Similarity=0.247 Sum_probs=49.4
Q ss_pred hHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhH
Q 013867 236 FLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKV 315 (435)
Q Consensus 236 y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~v 315 (435)
.=+| +.|+-++++..+..- ..+ .+....|....++|+|..|.+-|.||+. .-|++-|+|
T Consensus 566 Lie~-ErYqlaV~mckKc~i----D~f------------~aW~AWGlA~Lk~e~~aaAR~KFkqafk----lkgedipdv 624 (1141)
T KOG1811|consen 566 LIEA-ERYQLAVEMCKKCGI----DTF------------GAWHAWGLACLKAENLAAAREKFKQAFK----LKGEDIPDV 624 (1141)
T ss_pred HHHH-HHHHHHHHHHhhcCC----Ccc------------cHHHHHHHHHHHhhhHHHHHHHHHHHhC----CCCCccchH
Confidence 4444 357778888544321 122 3456788889999999999999999985 579999999
Q ss_pred HHHHHHH
Q 013867 316 GVVLTCL 322 (435)
Q Consensus 316 a~~L~nL 322 (435)
.--++|+
T Consensus 625 i~diin~ 631 (1141)
T KOG1811|consen 625 IFDIINL 631 (1141)
T ss_pred HHHHHHh
Confidence 9888887
No 407
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=23.00 E-value=1.4e+03 Score=27.68 Aligned_cols=121 Identities=16% Similarity=0.115 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHhh--------------------chHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHH
Q 013867 221 SAALSYGEYLHATR--------------------NFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFAL 280 (435)
Q Consensus 221 ~~a~~la~~~~~~G--------------------~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nL 280 (435)
.+...++.++..+. .-.++-.+-.|++.+. .. .+. + .-....+..|
T Consensus 386 E~~lr~~~~l~~~~~~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~---l~-----~l~-----~-~dqi~i~~~l 451 (1185)
T PF08626_consen 386 EACLRFARFLVAQHLSDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQ---LK-----DLS-----V-EDQIRIYSGL 451 (1185)
T ss_pred HHHHHHHHHHHHhhcccchhhhhccccccccCCCCHHHHHHHHHHhhhhh---hh-----hCC-----H-HHHHHHHHHH
Confidence 44555677777777 7788888888888883 21 121 1 1245678899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhh----h------hhHHHHHHHHHHHH
Q 013867 281 GQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHS----S------ALLIQEGLYRRALE 350 (435)
Q Consensus 281 a~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A----~------~~~~Ae~Ly~rAL~ 350 (435)
|.+|...|=.-++-=+.+.++...-..+..-|+++...|..+...|.-....+.. . -..-+..+.+-++.
T Consensus 452 A~vy~~lG~~RK~AFvlR~l~~~~~~~l~~~~~s~~~lL~~~~~~Ygi~~~~~~~~~~~~~~~~~~W~~LQi~vL~~~I~ 531 (1185)
T PF08626_consen 452 ASVYGSLGFHRKKAFVLRELAVQLVPGLIHWHQSYRSLLEELCKGYGISLDPESSSEDSSKGSQSNWPSLQIDVLKECIN 531 (1185)
T ss_pred HHHHHhcchhHHHHHHHHHHHHHhccccCCcchHHHHHHHHHhccCcccCCccccccccccccccCCHHHHHHHHHHHHH
Confidence 9999999999888888888888776666445666777777777777663221110 0 12345677777777
Q ss_pred HhcCC
Q 013867 351 FLKAP 355 (435)
Q Consensus 351 I~k~~ 355 (435)
+.+++
T Consensus 532 ~ae~l 536 (1185)
T PF08626_consen 532 IAEAL 536 (1185)
T ss_pred HHHhc
Confidence 77765
No 408
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=22.80 E-value=7.3e+02 Score=24.32 Aligned_cols=110 Identities=14% Similarity=0.085 Sum_probs=59.4
Q ss_pred HhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCC
Q 013867 232 ATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSH 311 (435)
Q Consensus 232 ~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~ 311 (435)
++++|++|+++....-.++-+.+. .++-..|+.++ ++.+++ .+
T Consensus 2 ~~kky~eAidLL~~Ga~~ll~~~Q------------------~~sg~DL~~ll----------------iev~~~---~~ 44 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSGALILLKHGQ------------------YGSGADLALLL----------------IEVYEK---SE 44 (260)
T ss_dssp HTT-HHHHHHHHHHHHHHHHHTT-------------------HHHHHHHHHHH----------------HHHHHH---TT
T ss_pred ccccHHHHHHHHHHHHHHHHHCCC------------------cchHHHHHHHH----------------HHHHHH---cC
Confidence 578999999988877777543221 12223444332 333333 33
Q ss_pred ChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcC--CCCCCCchhhhhccHHHHHHHhcCHHHHhhHh
Q 013867 312 HPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKA--PPLESEGVETKVDRTDIVALARGGYAEALSVQ 386 (435)
Q Consensus 312 HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~--~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~ 386 (435)
.|..-....+|..++..-+.-+.. -..+.++|+.-.+. ...+||+.= .-+|..++.-|+|.+|....
T Consensus 45 ~~~~~~~~~rl~~l~~~~~~~~p~-----r~~fi~~ai~WS~~~~~~~Gdp~LH---~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 45 DPVDEESIARLIELISLFPPEEPE-----RKKFIKAAIKWSKFGSYKFGDPELH---HLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp ---SHHHHHHHHHHHHHS-TT-TT-----HHHHHHHHHHHHHTSS-TT--HHHH---HHHHHHHHHTT-HHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhCCCCcch-----HHHHHHHHHHHHccCCCCCCCHHHH---HHHHHHHHhhccHHHHHHHH
Confidence 333344567777777766543322 26778888888732 234455422 13677788899999998765
No 409
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=22.40 E-value=7.6e+02 Score=26.87 Aligned_cols=69 Identities=16% Similarity=0.203 Sum_probs=49.4
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhhCCCChhH-----------HHHH---HHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHH
Q 013867 286 HMGNFGDAEEILTRTLTKTEELFGSHHPKV-----------GVVL---TCLALMFRNKAMQEHSSALLIQEGLYRRALEF 351 (435)
Q Consensus 286 ~qG~y~eAe~l~~rAL~I~e~~lG~~HP~v-----------a~~L---~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I 351 (435)
..-..++|+.-+.+|-..+++.+|++|-.+ |..| ---|.+...||+-++| -..+++|-.-
T Consensus 223 nitcL~DAe~RL~ra~kgf~~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deA------ye~le~a~~~ 296 (568)
T KOG2561|consen 223 NITCLPDAEVRLVRARKGFERSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEA------YEALESAHAK 296 (568)
T ss_pred ccccCChHHHHHHHHHHhhhhhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHH------HHHHHHHHHH
Confidence 456788999999999999999999988664 2222 1236777888988877 5667777777
Q ss_pred hcCCCCCCC
Q 013867 352 LKAPPLESE 360 (435)
Q Consensus 352 ~k~~~~~hp 360 (435)
+..+-+.|.
T Consensus 297 l~elki~d~ 305 (568)
T KOG2561|consen 297 LLELKINDE 305 (568)
T ss_pred HHHeeccch
Confidence 655444443
No 410
>KOG2460 consensus Signal recognition particle, subunit Srp68 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.38 E-value=1.9e+02 Score=31.76 Aligned_cols=61 Identities=7% Similarity=0.011 Sum_probs=43.7
Q ss_pred cHHHHHHHHHHHHhccCc---CCCCCcchHHH-------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhh
Q 013867 81 SYSQGMLVLEQCLSTQPS---DGQLAESWRGI-------------SLLAMSTLLYESGNYVEAIEKLQKVENFKNSI 141 (435)
Q Consensus 81 ~Y~eA~~~~eqaL~i~~~---~lG~~Hp~~A~-------------~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~ 141 (435)
++++=+.+|+-.+.+.+. .=|-+|...-+ -+..||..|..+++|.||..+|.||..-....
T Consensus 379 rpqdl~RLYd~iiknl~e~~elPG~~~D~~l~sqle~~~~~fkafRC~~iA~sY~a~~K~~EAlALy~Ra~sylqe~ 455 (593)
T KOG2460|consen 379 RPQDLERLYDSIIKNLSEIMELPGLESDKELQSQLELKKLYFKAFRCFYIAVSYQAKKKYSEALALYVRAYSYLQEV 455 (593)
T ss_pred CHHHHHHHHHHHHHHHHHHHhCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588888888887766554 34444433222 27789999999999999999999986544433
No 411
>PRK10941 hypothetical protein; Provisional
Probab=22.11 E-value=4.5e+02 Score=26.20 Aligned_cols=77 Identities=10% Similarity=0.012 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013867 221 SAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRT 300 (435)
Q Consensus 221 ~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rA 300 (435)
....++=..|...++|++|...-++.|.+. ++. |. -.-.-|.+|...|.+..|..=++.-
T Consensus 182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~------P~d---------p~-----e~RDRGll~~qL~c~~~A~~DL~~f 241 (269)
T PRK10941 182 KLLDTLKAALMEEKQMELALRASEALLQFD------PED---------PY-----EIRDRGLIYAQLDCEHVALSDLSYF 241 (269)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHhC------CCC---------HH-----HHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 334556678889999999999999999881 111 11 2347899999999999999988887
Q ss_pred HHHHHHhhCCCChhHHHHHHHH
Q 013867 301 LTKTEELFGSHHPKVGVVLTCL 322 (435)
Q Consensus 301 L~I~e~~lG~~HP~va~~L~nL 322 (435)
++.. |+.|+....-.-+
T Consensus 242 l~~~-----P~dp~a~~ik~ql 258 (269)
T PRK10941 242 VEQC-----PEDPISEMIRAQI 258 (269)
T ss_pred HHhC-----CCchhHHHHHHHH
Confidence 7653 5566554443333
No 412
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=22.07 E-value=1.5e+02 Score=29.46 Aligned_cols=57 Identities=11% Similarity=0.109 Sum_probs=47.8
Q ss_pred hhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHH
Q 013867 79 DESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILG 143 (435)
Q Consensus 79 ~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~ 143 (435)
.|++.-|-++|.|+|+.. |.-+....-+|....+.|+.+.|...|++.+++...-.+
T Consensus 8 ~~D~~aaaely~qal~la--------p~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 8 SGDAEAAAELYNQALELA--------PEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred cCChHHHHHHHHHHhhcC--------chhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 578999999999999654 556677779999999999999999999999887754443
No 413
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=21.77 E-value=5.5e+02 Score=31.08 Aligned_cols=87 Identities=10% Similarity=0.075 Sum_probs=65.7
Q ss_pred hhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcC--------------------CHHH
Q 013867 233 TRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMG--------------------NFGD 292 (435)
Q Consensus 233 ~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG--------------------~y~e 292 (435)
.-.|++|+.+|.|+..+..+ . .|.-+..-+...++.++..+. .-.+
T Consensus 358 ~~~~~~~l~~Y~~~~~~~~~--------~------~p~lv~~E~~lr~~~~l~~~~~~~~l~~iV~~~~~~~~~~~~~~e 423 (1185)
T PF08626_consen 358 PDLYEKALSLYSRSTNDTSE--------Y------VPQLVYSEACLRFARFLVAQHLSDNLDHIVKRPLTPTPNISSRSE 423 (1185)
T ss_pred hHHHHHHHHHHHHhhccccc--------c------CcchHHHHHHHHHHHHHHHhhcccchhhhhccccccccCCCCHHH
Confidence 34588999999998766211 1 144455667778888888888 8889
Q ss_pred HHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhh
Q 013867 293 AEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHS 335 (435)
Q Consensus 293 Ae~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A 335 (435)
+-.+..+++.+.-..+ ...+=...+..||.+|..-|=.-|.
T Consensus 424 I~~~l~~~~~~~l~~l--~~~dqi~i~~~lA~vy~~lG~~RK~ 464 (1185)
T PF08626_consen 424 IAEFLFKAFPLQLKDL--SVEDQIRIYSGLASVYGSLGFHRKK 464 (1185)
T ss_pred HHHHHHHhhhhhhhhC--CHHHHHHHHHHHHHHHHhcchhHHH
Confidence 9999999999876544 4666788999999999999977664
No 414
>KOG2168 consensus Cullins [Cell cycle control, cell division, chromosome partitioning]
Probab=21.75 E-value=8.9e+02 Score=28.24 Aligned_cols=105 Identities=15% Similarity=0.029 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHH-HHHHHHHHc---CCHH-HHHH
Q 013867 221 SAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATF-ALGQLEAHM---GNFG-DAEE 295 (435)
Q Consensus 221 ~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~-nLa~ly~~q---G~y~-eAe~ 295 (435)
..+..-|.-....|+|++|+.||..|=+- +.+ +..+| .|+++...- +... .=..
T Consensus 623 ~i~~~vA~~a~~~G~~~~sI~LY~lag~y-----------d~a----------l~link~LS~~l~~~~~~~~n~erl~~ 681 (835)
T KOG2168|consen 623 KIILEVASEADEDGLFEDAILLYHLAGDY-----------DKA----------LELINKLLSQVLHSPTLGQSNKERLGD 681 (835)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhh-----------hHH----------HHHHHHHHHHHHhhcccCCcchhhHHH
Confidence 33444566677899999999999987544 111 12233 456555443 2222 3344
Q ss_pred HHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcC
Q 013867 296 ILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKA 354 (435)
Q Consensus 296 l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~ 354 (435)
+-.+..+|++.--|.--+.+..+++-|=.++.-+..|- .+-++.||.|++.
T Consensus 682 La~~~~~~y~~~~~~~~~~~~~t~~lLl~~~~~f~~y~--------~~~~e~aL~~le~ 732 (835)
T KOG2168|consen 682 LALSMNDIYESNKGDSAKVVVKTLSLLLDLVSFFDLYH--------NGEWEEALSILEH 732 (835)
T ss_pred HHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHh--------hhHHHHHHHHHHH
Confidence 55666677777777666656667777766666666553 3457777777764
No 415
>cd09239 BRO1_HD-PTP_like Protein-interacting, N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP) and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. HD-PTP participates in cell migration and endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-l
Probab=21.70 E-value=9.1e+02 Score=25.01 Aligned_cols=36 Identities=14% Similarity=0.101 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHHHhh---------chHHHHHHHHHHHHHHHHhcc
Q 013867 220 GSAALSYGEYLHATR---------NFLLAKKFYQKVIEVLAEQKD 255 (435)
Q Consensus 220 ~~~a~~la~~~~~~G---------~y~eAe~ly~rAL~I~~~~~~ 255 (435)
.+++.|+|.+|...| ...+|-.+|++|--+++-.+.
T Consensus 114 a~vlfNigal~sq~a~~~~r~~~~glK~A~~~fq~AAG~F~~l~e 158 (361)
T cd09239 114 ASVLYNIGALHSQLGASDKRDSEEGMKVACTHFQCAAWAFAYLRE 158 (361)
T ss_pred HHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666766665433 377899999999888765443
No 416
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=21.52 E-value=2.4e+02 Score=30.48 Aligned_cols=63 Identities=16% Similarity=0.231 Sum_probs=47.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHH------------HHHH--HHHHHHHHHhcCCCcchHHHHHHHHHH
Q 013867 113 AMSTLLYESGNYVEAIEKLQKVENFKNSILGV------------RVAA--MEALAGLYLQLGQDDTSSVVADKCLQL 175 (435)
Q Consensus 113 nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i------------~vaa--le~L~g~~~~~g~~~~A~~~~~~~~~l 175 (435)
.=|..+++||+|..|.--|+-++++.++.... .|++ -..|.-+|+.++..+.|+....+++.+
T Consensus 181 ~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~l 257 (569)
T PF15015_consen 181 KDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINL 257 (569)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhc
Confidence 44667899999999999999999887654221 2332 357888999999999888777666655
No 417
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=21.15 E-value=1.7e+02 Score=31.06 Aligned_cols=71 Identities=8% Similarity=0.107 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 276 ATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 276 ~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
++..|-.++.-.|+|..|.+.++-.=--....|-.--+--.+++..+|-.|--.+||.+| ...|...|--.
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DA------ir~f~~iL~yi 194 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADA------IRTFSQILLYI 194 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHH------HHHHHHHHHHH
Confidence 566888999999999999887654211122234444444578899999999999997666 78888888776
No 418
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=20.48 E-value=1.1e+02 Score=28.13 Aligned_cols=31 Identities=16% Similarity=0.062 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 013867 275 AATFALGQLEAHMGNFGDAEEILTRTLTKTE 305 (435)
Q Consensus 275 ~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e 305 (435)
..+.+++.++..+|+.+||+....++..++-
T Consensus 145 ~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 145 NVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 4567999999999999999999999988765
No 419
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=20.11 E-value=1.1e+02 Score=18.63 Aligned_cols=16 Identities=38% Similarity=0.605 Sum_probs=12.8
Q ss_pred CCHHHHHHHHHHHHHH
Q 013867 288 GNFGDAEEILTRTLTK 303 (435)
Q Consensus 288 G~y~eAe~l~~rAL~I 303 (435)
|++++|..+|++++..
T Consensus 1 ~~~~~~r~i~e~~l~~ 16 (33)
T smart00386 1 GDIERARKIYERALEK 16 (33)
T ss_pred CcHHHHHHHHHHHHHH
Confidence 5678888899998864
Done!