Query 013867
Match_columns 435
No_of_seqs 229 out of 346
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 18:35:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013867.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013867hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3n71_A Histone lysine methyltr 99.9 9.1E-27 3.1E-31 245.4 16.7 143 227-388 316-460 (490)
2 3nf1_A KLC 1, kinesin light ch 99.9 4.5E-24 1.6E-28 200.9 25.5 243 53-387 18-302 (311)
3 3n71_A Histone lysine methyltr 99.9 6.2E-25 2.1E-29 231.4 20.5 146 77-352 320-465 (490)
4 3edt_B KLC 2, kinesin light ch 99.9 2.9E-24 9.9E-29 198.5 21.6 222 78-387 13-276 (283)
5 3qww_A SET and MYND domain-con 99.9 1.5E-24 5.2E-29 225.2 13.0 120 232-370 310-431 (433)
6 4a1s_A PINS, partner of inscut 99.9 7.6E-22 2.6E-26 195.0 29.3 299 57-392 43-372 (411)
7 3sf4_A G-protein-signaling mod 99.9 2E-21 6.9E-26 189.6 30.1 312 60-408 7-362 (406)
8 3ro2_A PINS homolog, G-protein 99.9 1E-20 3.6E-25 177.8 28.9 290 62-388 5-328 (338)
9 3qwp_A SET and MYND domain-con 99.9 5.6E-23 1.9E-27 212.9 14.5 129 228-374 295-424 (429)
10 3edt_B KLC 2, kinesin light ch 99.9 1.8E-21 6.1E-26 179.8 21.6 208 54-353 35-283 (283)
11 1w3b_A UDP-N-acetylglucosamine 99.9 1.4E-20 4.8E-25 185.6 27.8 158 217-415 200-361 (388)
12 4eqf_A PEX5-related protein; a 99.9 1.1E-20 3.7E-25 184.5 25.8 273 55-386 57-350 (365)
13 1w3b_A UDP-N-acetylglucosamine 99.9 7.8E-20 2.7E-24 180.3 31.0 289 55-415 29-327 (388)
14 3qww_A SET and MYND domain-con 99.9 1.1E-21 3.9E-26 203.6 18.0 144 56-323 285-431 (433)
15 3ulq_A Response regulator aspa 99.9 4.9E-20 1.7E-24 182.8 28.7 253 68-388 109-364 (383)
16 3sf4_A G-protein-signaling mod 99.9 2.7E-20 9.3E-25 181.6 26.4 292 55-381 39-365 (406)
17 3nf1_A KLC 1, kinesin light ch 99.9 5.9E-20 2E-24 172.7 26.9 205 96-388 15-220 (311)
18 2y4t_A DNAJ homolog subfamily 99.8 1.5E-18 5E-23 173.1 32.1 305 55-414 19-350 (450)
19 1fch_A Peroxisomal targeting s 99.8 3.3E-19 1.1E-23 172.8 26.2 267 62-387 64-354 (368)
20 3qwp_A SET and MYND domain-con 99.8 2.5E-20 8.7E-25 193.0 19.0 140 62-329 287-426 (429)
21 4a1s_A PINS, partner of inscut 99.8 6.7E-19 2.3E-23 173.9 27.5 281 104-413 44-363 (411)
22 3q15_A PSP28, response regulat 99.8 3.4E-19 1.2E-23 177.0 25.0 254 78-396 113-369 (378)
23 3ro2_A PINS homolog, G-protein 99.8 6.3E-19 2.2E-23 165.6 25.5 267 55-355 35-336 (338)
24 4g1t_A Interferon-induced prot 99.8 8.6E-20 2.9E-24 184.0 20.7 291 57-388 46-359 (472)
25 3ulq_A Response regulator aspa 99.8 6.4E-18 2.2E-22 167.5 27.2 234 56-355 137-372 (383)
26 4g1t_A Interferon-induced prot 99.8 1.4E-18 4.8E-23 175.0 22.4 309 55-391 87-458 (472)
27 3ieg_A DNAJ homolog subfamily 99.8 4E-17 1.4E-21 155.7 31.1 298 62-414 3-327 (359)
28 3cv0_A Peroxisome targeting si 99.8 9.4E-18 3.2E-22 158.7 26.5 270 60-388 19-311 (327)
29 2pl2_A Hypothetical conserved 99.8 2.6E-18 8.8E-23 159.0 20.1 205 63-388 6-210 (217)
30 4eqf_A PEX5-related protein; a 99.8 6.5E-19 2.2E-23 171.9 16.8 250 61-358 98-364 (365)
31 2ifu_A Gamma-SNAP; membrane fu 99.8 1.8E-17 6.2E-22 161.2 26.6 265 78-405 3-272 (307)
32 1fch_A Peroxisomal targeting s 99.8 3.1E-18 1.1E-22 165.9 20.8 280 79-416 38-353 (368)
33 2xpi_A Anaphase-promoting comp 99.8 2.7E-17 9.3E-22 170.3 28.6 272 76-415 282-572 (597)
34 3hym_B Cell division cycle pro 99.8 5.7E-18 2E-22 160.4 21.1 278 65-403 25-314 (330)
35 2y4t_A DNAJ homolog subfamily 99.8 8.2E-17 2.8E-21 160.5 30.5 279 60-388 58-354 (450)
36 3hym_B Cell division cycle pro 99.8 4.5E-17 1.5E-21 154.3 26.8 258 108-415 22-292 (330)
37 3uq3_A Heat shock protein STI1 99.8 1.1E-16 3.9E-21 146.1 26.4 234 59-353 2-238 (258)
38 3q15_A PSP28, response regulat 99.8 1E-16 3.6E-21 159.0 27.7 246 110-413 103-356 (378)
39 3ieg_A DNAJ homolog subfamily 99.8 1.1E-16 3.7E-21 152.7 26.7 277 62-388 37-331 (359)
40 2xpi_A Anaphase-promoting comp 99.8 1.3E-16 4.5E-21 165.1 28.6 266 59-387 302-574 (597)
41 1hz4_A MALT regulatory protein 99.8 3.4E-16 1.2E-20 153.6 29.4 284 65-413 17-313 (373)
42 4gyw_A UDP-N-acetylglucosamine 99.8 1.4E-17 4.7E-22 182.9 21.4 171 58-352 5-175 (723)
43 3fp2_A TPR repeat-containing p 99.8 9E-17 3.1E-21 163.5 26.0 296 58-414 21-399 (537)
44 3fp2_A TPR repeat-containing p 99.8 7E-16 2.4E-20 156.9 32.1 161 217-412 307-481 (537)
45 1qqe_A Vesicular transport pro 99.8 5.5E-17 1.9E-21 156.7 22.2 145 222-388 79-224 (292)
46 1qqe_A Vesicular transport pro 99.8 1.2E-17 4.1E-22 161.3 17.0 231 56-386 30-263 (292)
47 4gyw_A UDP-N-acetylglucosamine 99.7 2.4E-17 8.3E-22 181.0 19.5 166 102-386 3-168 (723)
48 1hz4_A MALT regulatory protein 99.7 2.9E-16 1E-20 154.1 25.1 262 61-387 52-317 (373)
49 2gw1_A Mitochondrial precursor 99.7 2.3E-16 7.9E-21 158.9 24.9 276 59-387 183-473 (514)
50 2gw1_A Mitochondrial precursor 99.7 1.5E-15 5E-20 153.1 29.7 262 105-414 183-470 (514)
51 3u4t_A TPR repeat-containing p 99.7 7.9E-17 2.7E-21 149.7 17.9 237 64-387 5-245 (272)
52 2ifu_A Gamma-SNAP; membrane fu 99.7 1.4E-16 4.8E-21 154.8 19.7 218 120-388 3-220 (307)
53 3vtx_A MAMA; tetratricopeptide 99.7 3.5E-16 1.2E-20 138.3 19.9 169 106-352 3-171 (184)
54 2qfc_A PLCR protein; TPR, HTH, 99.7 1E-15 3.4E-20 147.1 22.6 200 58-355 71-270 (293)
55 3qky_A Outer membrane assembly 99.7 1.4E-15 5E-20 142.6 23.0 218 58-385 11-254 (261)
56 2q7f_A YRRB protein; TPR, prot 99.7 3.6E-16 1.2E-20 142.2 18.0 205 58-352 19-223 (243)
57 3u3w_A Transcriptional activat 99.7 7.8E-16 2.7E-20 147.9 21.2 215 58-373 71-286 (293)
58 2ho1_A Type 4 fimbrial biogene 99.7 3.6E-15 1.2E-19 137.2 23.1 208 57-352 31-239 (252)
59 3uq3_A Heat shock protein STI1 99.7 4.9E-15 1.7E-19 135.2 23.5 212 105-388 2-232 (258)
60 4abn_A Tetratricopeptide repea 99.7 5.5E-16 1.9E-20 160.7 19.3 221 84-388 79-317 (474)
61 2pl2_A Hypothetical conserved 99.7 1.3E-15 4.3E-20 140.8 19.4 189 106-414 3-206 (217)
62 3gw4_A Uncharacterized protein 99.7 5.7E-15 2E-19 131.1 22.1 177 78-355 4-180 (203)
63 3cv0_A Peroxisome targeting si 99.7 9.3E-16 3.2E-20 145.0 17.7 238 62-357 55-322 (327)
64 1ouv_A Conserved hypothetical 99.7 8.1E-15 2.8E-19 137.9 23.7 222 62-388 6-247 (273)
65 2h6f_A Protein farnesyltransfe 99.7 8.6E-15 2.9E-19 149.0 25.7 231 58-386 93-341 (382)
66 4b4t_Q 26S proteasome regulato 99.7 8.8E-15 3E-19 145.6 23.0 226 78-356 16-250 (434)
67 2vq2_A PILW, putative fimbrial 99.6 6.7E-14 2.3E-18 125.0 23.7 215 57-363 3-219 (225)
68 3ro3_A PINS homolog, G-protein 99.6 2.1E-14 7.2E-19 120.7 19.1 159 103-355 4-162 (164)
69 3vtx_A MAMA; tetratricopeptide 99.6 2.9E-14 9.9E-19 126.0 20.3 168 61-304 4-171 (184)
70 3mkr_A Coatomer subunit epsilo 99.6 3.7E-14 1.3E-18 137.8 22.0 209 61-363 64-272 (291)
71 3u4t_A TPR repeat-containing p 99.6 1.2E-14 4.2E-19 134.9 17.8 210 64-352 39-251 (272)
72 2qfc_A PLCR protein; TPR, HTH, 99.6 9E-15 3.1E-19 140.5 16.8 138 226-386 121-260 (293)
73 2vq2_A PILW, putative fimbrial 99.6 1.5E-13 5.1E-18 122.7 23.0 202 103-386 3-205 (225)
74 1xnf_A Lipoprotein NLPI; TPR, 99.6 1.7E-13 6E-18 126.6 24.0 224 77-386 16-269 (275)
75 4abn_A Tetratricopeptide repea 99.6 2.2E-14 7.4E-19 148.7 19.7 205 58-335 98-311 (474)
76 2h6f_A Protein farnesyltransfe 99.6 2.7E-14 9.4E-19 145.3 20.0 203 103-384 92-297 (382)
77 2ho1_A Type 4 fimbrial biogene 99.6 6.6E-14 2.3E-18 128.7 20.2 200 104-386 32-232 (252)
78 2q7f_A YRRB protein; TPR, prot 99.6 2E-14 6.9E-19 130.6 16.4 198 105-387 20-217 (243)
79 3gw4_A Uncharacterized protein 99.6 2.3E-14 8E-19 127.1 16.3 147 219-387 25-171 (203)
80 3u3w_A Transcriptional activat 99.6 6.1E-14 2.1E-18 134.6 20.3 141 226-388 121-262 (293)
81 4i17_A Hypothetical protein; T 99.6 1.7E-13 5.8E-18 125.3 22.1 159 109-332 8-169 (228)
82 3mkr_A Coatomer subunit epsilo 99.6 7E-14 2.4E-18 135.9 20.3 239 79-382 12-253 (291)
83 3ro3_A PINS homolog, G-protein 99.6 3.9E-14 1.3E-18 119.0 16.1 146 220-388 9-154 (164)
84 3as5_A MAMA; tetratricopeptide 99.6 4.2E-13 1.4E-17 115.6 19.7 170 59-352 5-174 (186)
85 4b4t_Q 26S proteasome regulato 99.5 2.2E-13 7.4E-18 135.6 19.6 221 110-386 6-239 (434)
86 2pzi_A Probable serine/threoni 99.5 5.2E-14 1.8E-18 152.6 16.3 206 78-361 403-608 (681)
87 1ouv_A Conserved hypothetical 99.5 9.8E-13 3.3E-17 123.6 22.7 198 63-352 39-252 (273)
88 3qky_A Outer membrane assembly 99.5 2.2E-12 7.4E-17 120.8 21.5 189 55-335 45-251 (261)
89 3as5_A MAMA; tetratricopeptide 99.5 1.5E-12 5E-17 112.2 18.1 165 104-387 4-168 (186)
90 4ga2_A E3 SUMO-protein ligase 99.5 1.8E-13 6.2E-18 119.6 10.7 115 223-377 34-148 (150)
91 4i17_A Hypothetical protein; T 99.5 3.9E-12 1.3E-16 116.2 19.6 187 63-320 8-221 (228)
92 4ga2_A E3 SUMO-protein ligase 99.5 1.1E-12 3.9E-17 114.6 14.6 140 78-331 9-149 (150)
93 2xm6_A Protein corresponding t 99.5 6.5E-11 2.2E-15 121.6 30.2 282 62-405 75-411 (490)
94 4gcn_A Protein STI-1; structur 99.4 1.1E-12 3.7E-17 111.7 13.8 105 221-352 9-113 (127)
95 2vsy_A XCC0866; transferase, g 99.4 1.7E-12 5.9E-17 136.0 17.2 52 79-138 2-53 (568)
96 2yhc_A BAMD, UPF0169 lipoprote 99.4 8E-12 2.7E-16 115.4 19.6 199 63-351 5-213 (225)
97 3urz_A Uncharacterized protein 99.4 6.2E-12 2.1E-16 115.1 18.3 166 62-352 4-187 (208)
98 2xm6_A Protein corresponding t 99.4 5.8E-11 2E-15 122.0 27.3 123 219-388 290-428 (490)
99 3urz_A Uncharacterized protein 99.4 8.8E-12 3E-16 114.1 18.8 125 223-387 57-181 (208)
100 1xnf_A Lipoprotein NLPI; TPR, 99.4 6.4E-12 2.2E-16 116.0 17.6 222 57-335 38-265 (275)
101 2ond_A Cleavage stimulation fa 99.4 2.2E-11 7.5E-16 117.8 20.8 215 83-386 33-264 (308)
102 3qou_A Protein YBBN; thioredox 99.4 1.3E-11 4.4E-16 119.1 18.3 88 230-351 195-284 (287)
103 1wao_1 Serine/threonine protei 99.4 3.8E-13 1.3E-17 140.2 7.6 183 58-354 2-200 (477)
104 2yhc_A BAMD, UPF0169 lipoprote 99.4 2.6E-11 9E-16 111.9 18.1 173 107-386 3-207 (225)
105 2ond_A Cleavage stimulation fa 99.4 8.7E-11 3E-15 113.5 22.2 190 82-352 80-271 (308)
106 1p5q_A FKBP52, FK506-binding p 99.4 5.5E-12 1.9E-16 124.9 13.9 170 79-352 126-295 (336)
107 4gco_A Protein STI-1; structur 99.3 1E-11 3.5E-16 105.8 13.3 103 216-352 9-111 (126)
108 2pzi_A Probable serine/threoni 99.3 4.7E-12 1.6E-16 137.2 13.3 174 57-307 428-602 (681)
109 4gcn_A Protein STI-1; structur 99.3 6.1E-12 2.1E-16 107.0 11.3 100 275-388 9-108 (127)
110 2r5s_A Uncharacterized protein 99.3 1.6E-11 5.4E-16 108.9 14.1 167 63-303 7-173 (176)
111 4gco_A Protein STI-1; structur 99.3 2.8E-11 9.4E-16 103.1 14.2 116 104-325 9-124 (126)
112 3gyz_A Chaperone protein IPGC; 99.3 1.7E-11 5.9E-16 108.7 11.8 103 216-352 32-134 (151)
113 1a17_A Serine/threonine protei 99.3 1.2E-10 4E-15 99.5 15.0 128 221-387 14-141 (166)
114 2hr2_A Hypothetical protein; a 99.3 1.3E-10 4.5E-15 105.1 15.8 117 221-352 12-132 (159)
115 1hh8_A P67PHOX, NCF-2, neutrop 99.2 4.7E-11 1.6E-15 107.2 12.0 128 223-387 9-145 (213)
116 1hh8_A P67PHOX, NCF-2, neutrop 99.2 1.8E-10 6.3E-15 103.3 15.8 103 224-352 41-151 (213)
117 2fo7_A Synthetic consensus TPR 99.2 4E-10 1.4E-14 91.2 16.4 93 226-352 41-133 (136)
118 2fo7_A Synthetic consensus TPR 99.2 2E-10 6.8E-15 93.0 14.5 124 222-386 3-126 (136)
119 3rjv_A Putative SEL1 repeat pr 99.2 3E-10 1E-14 104.5 17.4 180 84-352 4-198 (212)
120 1p5q_A FKBP52, FK506-binding p 99.2 6.7E-11 2.3E-15 117.1 13.8 139 219-384 146-285 (336)
121 1a17_A Serine/threonine protei 99.2 8.2E-10 2.8E-14 94.2 18.6 143 105-357 10-152 (166)
122 2r5s_A Uncharacterized protein 99.2 6.3E-11 2.1E-15 105.0 11.8 169 104-351 2-173 (176)
123 1wao_1 Serine/threonine protei 99.2 8.8E-12 3E-16 129.8 7.1 149 225-414 11-187 (477)
124 3qou_A Protein YBBN; thioredox 99.2 2.2E-10 7.5E-15 110.4 15.9 167 105-388 114-280 (287)
125 2vsy_A XCC0866; transferase, g 99.2 1.2E-10 3.9E-15 122.2 15.0 131 217-388 20-153 (568)
126 3upv_A Heat shock protein STI1 99.2 1.9E-10 6.5E-15 95.6 13.1 98 221-352 5-102 (126)
127 2lni_A Stress-induced-phosphop 99.2 2E-10 6.9E-15 94.1 12.8 121 217-378 13-133 (133)
128 2vyi_A SGTA protein; chaperone 99.2 3.3E-10 1.1E-14 91.9 13.6 120 219-379 11-130 (131)
129 3gyz_A Chaperone protein IPGC; 99.2 3.5E-10 1.2E-14 100.3 14.6 124 237-388 6-129 (151)
130 3sz7_A HSC70 cochaperone (SGT) 99.2 2.5E-10 8.6E-15 99.6 13.2 101 218-352 9-109 (164)
131 3rkv_A Putative peptidylprolyl 99.2 5E-10 1.7E-14 97.5 14.7 116 221-352 12-127 (162)
132 2vgx_A Chaperone SYCD; alterna 99.2 2.1E-10 7.3E-15 100.0 12.3 102 217-352 18-119 (148)
133 1kt0_A FKBP51, 51 kDa FK506-bi 99.2 8.4E-11 2.9E-15 121.4 10.7 169 80-352 248-416 (457)
134 2lni_A Stress-induced-phosphop 99.1 1.1E-09 3.7E-14 89.7 15.0 126 100-331 8-133 (133)
135 2fbn_A 70 kDa peptidylprolyl i 99.1 3.3E-10 1.1E-14 101.8 12.8 136 221-383 39-176 (198)
136 4f3v_A ESX-1 secretion system 99.1 1.9E-10 6.6E-15 113.0 12.0 224 60-352 5-238 (282)
137 1na0_A Designed protein CTPR3; 99.1 1E-09 3.4E-14 88.2 14.3 117 220-377 9-125 (125)
138 1elr_A TPR2A-domain of HOP; HO 99.1 8.2E-10 2.8E-14 89.7 13.7 105 221-352 5-109 (131)
139 2xev_A YBGF; tetratricopeptide 99.1 8.7E-10 3E-14 90.9 13.8 103 222-352 4-106 (129)
140 3e4b_A ALGK; tetratricopeptide 99.1 2E-09 6.7E-14 110.7 19.6 28 222-249 178-208 (452)
141 3upv_A Heat shock protein STI1 99.1 2.9E-09 9.9E-14 88.3 16.7 123 105-327 1-123 (126)
142 2fbn_A 70 kDa peptidylprolyl i 99.1 1.1E-09 3.8E-14 98.4 15.2 144 102-335 32-175 (198)
143 3q49_B STIP1 homology and U bo 99.1 9.7E-10 3.3E-14 91.6 13.4 102 218-353 7-108 (137)
144 2xcb_A PCRH, regulatory protei 99.1 6.3E-10 2.2E-14 95.2 12.4 102 217-352 15-116 (142)
145 2ooe_A Cleavage stimulation fa 99.1 6.1E-09 2.1E-13 107.9 21.7 215 83-386 255-486 (530)
146 2vyi_A SGTA protein; chaperone 99.1 3.5E-09 1.2E-13 85.7 15.4 125 102-332 6-130 (131)
147 3rkv_A Putative peptidylprolyl 99.1 8.4E-09 2.9E-13 89.6 18.7 145 103-335 6-151 (162)
148 3e4b_A ALGK; tetratricopeptide 99.1 7.3E-09 2.5E-13 106.4 21.3 183 110-386 178-381 (452)
149 3sz7_A HSC70 cochaperone (SGT) 99.1 5.1E-09 1.7E-13 91.2 17.2 110 102-314 5-114 (164)
150 1na0_A Designed protein CTPR3; 99.1 5.2E-09 1.8E-13 84.0 15.4 118 107-330 8-125 (125)
151 1hxi_A PEX5, peroxisome target 99.1 1.4E-09 4.8E-14 91.6 12.0 96 223-352 20-115 (121)
152 1kt0_A FKBP51, 51 kDa FK506-bi 99.1 1E-09 3.4E-14 113.3 13.4 141 218-385 266-407 (457)
153 1ihg_A Cyclophilin 40; ppiase 99.0 1.9E-09 6.5E-14 108.7 14.7 139 221-384 224-362 (370)
154 2ooe_A Cleavage stimulation fa 99.0 1.3E-08 4.3E-13 105.6 21.3 193 79-352 292-493 (530)
155 2dba_A Smooth muscle cell asso 99.0 2.4E-09 8E-14 89.5 12.2 105 217-352 25-129 (148)
156 2c2l_A CHIP, carboxy terminus 99.0 3E-09 1E-13 102.3 14.5 195 61-303 3-199 (281)
157 3k9i_A BH0479 protein; putativ 99.0 7.8E-10 2.7E-14 91.5 8.8 90 232-352 2-91 (117)
158 1elw_A TPR1-domain of HOP; HOP 99.0 3.5E-09 1.2E-13 84.3 12.4 98 221-352 5-102 (118)
159 2vgx_A Chaperone SYCD; alterna 99.0 6.1E-10 2.1E-14 97.1 8.5 94 274-388 21-114 (148)
160 2kck_A TPR repeat; tetratricop 99.0 8.6E-10 2.9E-14 87.4 8.2 99 220-352 6-107 (112)
161 2e2e_A Formate-dependent nitri 99.0 3.2E-09 1.1E-13 93.1 10.6 116 231-387 21-139 (177)
162 2c2l_A CHIP, carboxy terminus 99.0 6.2E-09 2.1E-13 100.1 13.5 99 220-352 4-102 (281)
163 2e2e_A Formate-dependent nitri 98.9 1.2E-08 4E-13 89.5 13.9 101 218-352 42-145 (177)
164 2hr2_A Hypothetical protein; a 98.9 3.5E-09 1.2E-13 95.7 10.4 107 276-388 13-127 (159)
165 1elr_A TPR2A-domain of HOP; HO 98.9 1.1E-08 3.7E-13 83.0 11.0 99 275-387 5-103 (131)
166 3rjv_A Putative SEL1 repeat pr 98.9 1.6E-08 5.5E-13 92.8 13.2 140 221-405 19-174 (212)
167 1xi4_A Clathrin heavy chain; a 98.9 1.1E-07 3.9E-12 109.8 22.8 252 79-388 998-1305(1630)
168 4f3v_A ESX-1 secretion system 98.9 5.2E-08 1.8E-12 95.7 17.3 145 221-417 103-249 (282)
169 1ihg_A Cyclophilin 40; ppiase 98.9 3E-08 1E-12 99.9 15.8 141 105-335 220-360 (370)
170 2xev_A YBGF; tetratricopeptide 98.9 2.4E-08 8.1E-13 82.2 12.3 97 276-387 4-100 (129)
171 1xi4_A Clathrin heavy chain; a 98.9 1.3E-07 4.5E-12 109.3 22.0 249 78-391 1061-1344(1630)
172 2if4_A ATFKBP42; FKBP-like, al 98.9 7.8E-09 2.7E-13 102.3 10.6 153 105-352 176-329 (338)
173 2xcb_A PCRH, regulatory protei 98.8 2.3E-08 8E-13 85.3 11.6 94 274-388 18-111 (142)
174 1na3_A Designed protein CTPR2; 98.8 3.6E-08 1.2E-12 76.0 10.9 84 219-330 8-91 (91)
175 3q49_B STIP1 homology and U bo 98.8 3.3E-08 1.1E-12 82.1 11.4 91 275-386 10-100 (137)
176 2if4_A ATFKBP42; FKBP-like, al 98.8 8.1E-09 2.8E-13 102.2 8.3 116 220-352 179-294 (338)
177 2l6j_A TPR repeat-containing p 98.8 2.6E-08 8.9E-13 79.5 9.1 90 221-335 5-97 (111)
178 1hxi_A PEX5, peroxisome target 98.8 4E-08 1.4E-12 82.5 10.1 91 276-387 19-109 (121)
179 2l6j_A TPR repeat-containing p 98.7 1.1E-08 3.7E-13 81.8 6.2 95 274-386 4-101 (111)
180 1elw_A TPR1-domain of HOP; HOP 98.7 1.3E-07 4.4E-12 75.1 11.9 93 274-387 4-96 (118)
181 2dba_A Smooth muscle cell asso 98.7 9.2E-08 3.1E-12 79.7 11.3 96 274-387 28-123 (148)
182 3k9i_A BH0479 protein; putativ 98.7 2E-08 6.8E-13 82.9 6.9 85 286-388 2-86 (117)
183 2kck_A TPR repeat; tetratricop 98.7 4.2E-08 1.4E-12 77.4 7.6 92 276-386 8-100 (112)
184 1zu2_A Mitochondrial import re 98.7 7.2E-08 2.5E-12 87.0 9.6 88 231-352 13-121 (158)
185 1na3_A Designed protein CTPR2; 98.6 1.9E-07 6.3E-12 71.9 10.2 82 275-377 10-91 (91)
186 2kat_A Uncharacterized protein 98.6 9.3E-08 3.2E-12 78.1 8.8 83 237-353 2-84 (115)
187 1b89_A Protein (clathrin heavy 98.6 6.3E-08 2.1E-12 100.7 9.5 234 78-390 15-270 (449)
188 3ma5_A Tetratricopeptide repea 98.5 8.2E-07 2.8E-11 71.7 10.3 70 217-306 4-73 (100)
189 3ma5_A Tetratricopeptide repea 98.4 1.1E-06 3.8E-11 70.9 8.4 65 275-353 8-72 (100)
190 3dra_A Protein farnesyltransfe 98.3 0.00016 5.5E-09 71.3 25.0 239 61-388 31-283 (306)
191 2kat_A Uncharacterized protein 98.3 6.5E-06 2.2E-10 67.0 12.0 70 217-306 16-85 (115)
192 2kc7_A BFR218_protein; tetratr 98.3 2.8E-06 9.7E-11 66.9 9.4 66 225-315 5-71 (99)
193 3mv2_B Coatomer subunit epsilo 98.3 3.5E-05 1.2E-09 76.5 17.8 195 85-363 85-290 (310)
194 2v5f_A Prolyl 4-hydroxylase su 98.2 1.8E-05 6E-10 64.9 11.5 79 224-323 9-87 (104)
195 1zu2_A Mitochondrial import re 98.2 7.5E-06 2.6E-10 73.7 9.7 67 217-303 33-120 (158)
196 1klx_A Cysteine rich protein B 98.1 1.4E-05 4.8E-10 68.7 9.4 107 233-388 8-122 (138)
197 3dra_A Protein farnesyltransfe 98.1 0.00019 6.4E-09 70.8 18.5 189 81-350 84-286 (306)
198 3mv2_B Coatomer subunit epsilo 98.0 0.0002 6.7E-09 71.1 17.8 188 66-317 104-291 (310)
199 2kc7_A BFR218_protein; tetratr 98.0 1.8E-05 6.1E-10 62.2 8.1 61 278-352 4-65 (99)
200 1b89_A Protein (clathrin heavy 98.0 3.5E-06 1.2E-10 87.6 4.5 103 276-412 124-226 (449)
201 1klx_A Cysteine rich protein B 98.0 2.5E-05 8.6E-10 67.0 9.1 88 226-351 31-126 (138)
202 2v5f_A Prolyl 4-hydroxylase su 97.8 6.2E-05 2.1E-09 61.6 8.6 80 277-370 8-87 (104)
203 1dce_A Protein (RAB geranylger 97.7 0.0006 2E-08 72.5 15.6 177 80-334 43-244 (567)
204 3bee_A Putative YFRE protein; 97.6 0.00064 2.2E-08 55.0 11.1 85 217-326 3-90 (93)
205 3u64_A Protein TP_0956; tetrat 97.5 0.0031 1.1E-07 62.1 16.6 88 233-352 176-270 (301)
206 3u64_A Protein TP_0956; tetrat 97.4 0.0011 3.8E-08 65.3 12.6 66 219-303 198-269 (301)
207 3q7a_A Farnesyltransferase alp 97.4 0.029 9.9E-07 56.3 22.6 228 79-386 67-325 (349)
208 3txn_A 26S proteasome regulato 97.4 0.035 1.2E-06 56.7 23.1 95 225-335 104-200 (394)
209 3dss_A Geranylgeranyl transfer 97.3 0.019 6.6E-07 57.1 20.0 172 79-328 42-239 (331)
210 3ffl_A Anaphase-promoting comp 97.2 0.0011 3.7E-08 60.1 8.9 97 228-335 28-141 (167)
211 3bee_A Putative YFRE protein; 97.2 0.00068 2.3E-08 54.9 6.8 71 59-138 3-73 (93)
212 4e6h_A MRNA 3'-END-processing 97.1 0.03 1E-06 60.9 20.8 206 81-352 324-534 (679)
213 4g26_A Pentatricopeptide repea 96.9 0.047 1.6E-06 57.0 19.4 98 222-351 107-204 (501)
214 4e6h_A MRNA 3'-END-processing 96.6 0.13 4.4E-06 56.0 20.5 206 78-352 355-571 (679)
215 1dce_A Protein (RAB geranylger 96.6 0.026 8.9E-07 59.8 14.7 119 217-376 60-191 (567)
216 3ly7_A Transcriptional activat 96.6 0.049 1.7E-06 55.2 15.9 66 217-303 274-339 (372)
217 1pc2_A Mitochondria fission pr 96.5 0.007 2.4E-07 54.0 8.1 73 60-140 30-103 (152)
218 1pc2_A Mitochondria fission pr 96.0 0.028 9.7E-07 50.0 9.1 86 234-352 12-101 (152)
219 4g26_A Pentatricopeptide repea 96.0 0.085 2.9E-06 55.0 14.2 155 79-301 39-202 (501)
220 3ffl_A Anaphase-promoting comp 95.9 0.15 5E-06 46.1 13.2 104 277-386 23-145 (167)
221 3ly7_A Transcriptional activat 95.8 0.16 5.6E-06 51.4 15.0 62 276-352 279-340 (372)
222 3q7a_A Farnesyltransferase alp 95.8 0.12 4E-06 51.9 13.8 123 217-380 51-176 (349)
223 3dss_A Geranylgeranyl transfer 95.8 0.88 3E-05 45.1 20.0 52 81-140 89-142 (331)
224 2uy1_A Cleavage stimulation fa 95.7 0.9 3.1E-05 46.9 20.4 52 82-142 195-246 (493)
225 3mkq_A Coatomer beta'-subunit; 95.4 0.1 3.4E-06 55.6 12.5 118 276-419 683-809 (814)
226 4b4t_P 26S proteasome regulato 94.4 5 0.00017 41.0 26.3 218 79-352 29-248 (445)
227 2uy1_A Cleavage stimulation fa 93.9 0.85 2.9E-05 47.1 14.5 37 77-136 5-42 (493)
228 3txn_A 26S proteasome regulato 92.5 0.58 2E-05 47.6 10.5 100 278-386 103-204 (394)
229 1nzn_A CGI-135 protein, fissio 92.2 0.68 2.3E-05 39.8 8.9 71 61-139 34-105 (126)
230 3mkq_A Coatomer beta'-subunit; 91.5 3.9 0.00013 43.2 16.0 50 283-333 745-800 (814)
231 4b4t_R RPN7, 26S proteasome re 91.5 1.1 3.7E-05 45.6 11.2 105 222-352 133-238 (429)
232 3o48_A Mitochondria fission 1 91.5 0.61 2.1E-05 40.6 7.8 68 62-138 40-108 (134)
233 1y8m_A FIS1; mitochondria, unk 90.6 0.77 2.6E-05 40.4 7.8 70 60-137 37-106 (144)
234 1ya0_A SMG-7 transcript varian 90.0 1.2 4.2E-05 46.6 10.1 78 223-328 155-232 (497)
235 4b4t_R RPN7, 26S proteasome re 88.9 1.5 5.2E-05 44.5 9.7 97 277-386 134-231 (429)
236 4a5x_A MITD1, MIT domain-conta 87.9 3.6 0.00012 32.7 9.3 62 267-328 9-71 (86)
237 1ya0_A SMG-7 transcript varian 87.7 1.1 3.8E-05 46.9 7.8 62 276-351 154-215 (497)
238 1nzn_A CGI-135 protein, fissio 86.8 7.5 0.00026 33.2 11.2 90 233-352 14-104 (126)
239 2br9_A 14-3-3E, 14-3-3 protein 84.9 1.4 4.8E-05 41.7 6.2 54 83-136 147-201 (234)
240 2npm_A 14-3-3 domain containin 84.6 2.1 7.1E-05 41.2 7.3 54 83-137 173-227 (260)
241 4gns_B Protein CSD3, chitin bi 83.2 16 0.00056 40.1 14.6 59 222-300 339-397 (754)
242 1o9d_A 14-3-3-like protein C; 83.1 2 6.8E-05 41.3 6.5 54 83-136 152-206 (260)
243 2ff4_A Probable regulatory pro 83.0 8.9 0.0003 38.2 11.7 109 232-361 127-245 (388)
244 2o8p_A 14-3-3 domain containin 82.7 1.5 5.1E-05 41.3 5.4 60 79-138 138-198 (227)
245 2br9_A 14-3-3E, 14-3-3 protein 82.6 5.2 0.00018 37.8 9.1 66 291-358 147-213 (234)
246 3iqu_A 14-3-3 protein sigma; s 82.6 2.1 7.1E-05 40.6 6.3 56 82-137 149-205 (236)
247 3uzd_A 14-3-3 protein gamma; s 82.6 1.9 6.7E-05 41.1 6.2 56 82-137 147-203 (248)
248 3ubw_A 14-3-3E, 14-3-3 protein 81.9 2.1 7.3E-05 41.1 6.2 55 83-137 173-228 (261)
249 4h7y_A Dual specificity protei 79.6 28 0.00096 30.9 12.1 104 222-352 15-124 (161)
250 4b4t_P 26S proteasome regulato 78.2 11 0.00038 38.4 10.6 99 277-386 140-241 (445)
251 2wpv_A GET4, UPF0363 protein Y 77.9 46 0.0016 32.5 14.5 62 79-180 26-87 (312)
252 3ubw_A 14-3-3E, 14-3-3 protein 77.3 9.6 0.00033 36.5 9.1 66 291-358 173-239 (261)
253 2ff4_A Probable regulatory pro 77.2 11 0.00037 37.6 10.0 70 222-311 173-242 (388)
254 3spa_A Mtrpol, DNA-directed RN 77.1 12 0.00039 42.9 11.0 91 222-335 129-220 (1134)
255 3uzd_A 14-3-3 protein gamma; s 75.6 11 0.00039 35.7 9.1 65 291-357 148-213 (248)
256 1o9d_A 14-3-3-like protein C; 75.5 8.9 0.0003 36.8 8.3 67 291-359 152-219 (260)
257 2cpt_A SKD1 protein, vacuolar 75.0 21 0.00073 29.8 9.7 53 277-329 21-75 (117)
258 4h7y_A Dual specificity protei 74.0 13 0.00043 33.2 8.3 67 59-138 58-124 (161)
259 3efz_A 14-3-3 protein; 14-3-3, 73.2 3.5 0.00012 39.8 4.8 56 82-137 168-226 (268)
260 2npm_A 14-3-3 domain containin 72.3 9.7 0.00033 36.5 7.7 63 291-356 173-236 (260)
261 3o48_A Mitochondria fission 1 72.1 10 0.00035 32.7 7.1 69 273-352 39-108 (134)
262 3iqu_A 14-3-3 protein sigma; s 71.5 14 0.00049 34.8 8.6 62 291-354 150-212 (236)
263 2w2u_A Hypothetical P60 katani 71.4 8.9 0.0003 30.2 6.1 45 277-321 22-67 (83)
264 3lpz_A GET4 (YOR164C homolog); 68.6 93 0.0032 30.7 14.2 50 113-180 40-89 (336)
265 4gns_B Protein CSD3, chitin bi 67.9 82 0.0028 34.5 14.9 83 290-385 301-393 (754)
266 4gq4_A Menin; tumor suppressor 66.2 25 0.00085 36.1 9.5 70 275-353 263-334 (489)
267 2o8p_A 14-3-3 domain containin 64.3 12 0.00041 35.2 6.4 61 287-353 138-199 (227)
268 1y8m_A FIS1; mitochondria, unk 63.4 16 0.00055 31.9 6.6 68 274-352 39-107 (144)
269 2w2u_A Hypothetical P60 katani 62.6 13 0.00044 29.3 5.4 30 109-138 20-49 (83)
270 2crb_A Nuclear receptor bindin 62.0 13 0.00046 30.1 5.4 34 105-138 12-45 (97)
271 3spa_A Mtrpol, DNA-directed RN 61.6 31 0.001 39.5 10.1 102 57-169 122-224 (1134)
272 1wfd_A Hypothetical protein 15 61.5 59 0.002 25.8 9.7 52 277-328 18-70 (93)
273 2v6y_A AAA family ATPase, P60 60.8 15 0.00051 28.8 5.5 30 279-308 16-45 (83)
274 2v6y_A AAA family ATPase, P60 60.6 14 0.00049 28.9 5.4 30 109-138 12-41 (83)
275 3re2_A Predicted protein; meni 60.0 36 0.0012 34.4 9.1 86 233-335 228-315 (472)
276 4a5x_A MITD1, MIT domain-conta 56.3 19 0.00064 28.5 5.4 33 106-138 14-46 (86)
277 2rpa_A Katanin P60 ATPase-cont 54.2 22 0.00075 27.8 5.3 33 279-311 17-49 (78)
278 2v6x_A Vacuolar protein sortin 54.2 21 0.00073 27.7 5.4 32 107-138 12-43 (85)
279 2xze_A STAM-binding protein; h 53.7 53 0.0018 28.4 8.3 43 315-363 39-81 (146)
280 4b4t_O 26S proteasome regulato 52.9 1.5E+02 0.005 29.5 12.7 102 230-335 86-188 (393)
281 3u84_A Menin; MLL, JUND, ledgf 52.5 54 0.0018 33.7 9.1 69 276-353 279-349 (550)
282 1wfd_A Hypothetical protein 15 52.3 25 0.00085 28.1 5.6 33 106-138 13-45 (93)
283 4fhn_B Nucleoporin NUP120; pro 51.7 29 0.001 39.5 8.1 100 277-385 845-960 (1139)
284 2wm9_A Dedicator of cytokinesi 51.6 1.2E+02 0.0043 30.5 12.0 87 221-307 12-121 (428)
285 2cpt_A SKD1 protein, vacuolar 51.0 22 0.00075 29.8 5.2 31 108-138 18-48 (117)
286 2v6x_A Vacuolar protein sortin 50.7 74 0.0025 24.5 8.1 52 277-328 16-68 (85)
287 3efz_A 14-3-3 protein; 14-3-3, 49.2 31 0.0011 33.1 6.5 55 291-351 169-226 (268)
288 2crb_A Nuclear receptor bindin 48.2 18 0.0006 29.4 3.9 30 226-255 21-50 (97)
289 1zb1_A BRO1 protein; AIP1, BRO 46.9 2E+02 0.0068 28.5 12.6 130 276-405 125-288 (392)
290 3mkq_B Coatomer subunit alpha; 45.5 1.1E+02 0.0039 27.2 9.4 21 227-247 41-61 (177)
291 3kae_A CDC27, possible protein 44.0 1.5E+02 0.0052 27.1 9.8 70 62-135 62-141 (242)
292 3mkq_B Coatomer subunit alpha; 38.0 2.2E+02 0.0074 25.4 14.3 44 79-135 18-61 (177)
293 4b4t_S RPN3, 26S proteasome re 36.5 3.9E+02 0.013 27.9 13.9 93 63-161 231-326 (523)
294 2xze_A STAM-binding protein; h 34.5 44 0.0015 29.0 4.7 40 276-316 42-81 (146)
295 2wpv_A GET4, UPF0363 protein Y 33.1 3.4E+02 0.012 26.2 14.9 104 288-402 67-178 (312)
296 4fhn_B Nucleoporin NUP120; pro 32.7 2.6E+02 0.0089 31.6 12.0 100 224-335 846-957 (1139)
297 2rpa_A Katanin P60 ATPase-cont 31.5 46 0.0016 26.0 3.8 31 112-142 16-46 (78)
298 2wb7_A PT26-6P; extra chromoso 28.5 1.2E+02 0.0042 31.6 7.4 42 291-332 449-490 (526)
299 3myv_A SUSD superfamily protei 27.7 1.4E+02 0.0046 30.1 7.8 35 102-136 184-218 (454)
300 4a1g_A Mitotic checkpoint seri 27.7 60 0.002 28.4 4.4 29 221-249 102-130 (152)
301 3esl_A Checkpoint serine/threo 27.5 1.3E+02 0.0043 27.6 6.7 48 82-135 95-142 (202)
302 3mcx_A SUSD superfamily protei 25.7 1.7E+02 0.0057 29.5 8.0 55 82-136 176-230 (477)
303 2wvi_A Mitotic checkpoint seri 25.6 1.1E+02 0.0037 27.0 5.7 47 84-136 78-124 (164)
304 2xs1_A Programmed cell death 6 25.0 6.2E+02 0.021 27.0 12.8 78 276-353 129-238 (704)
305 3kez_A Putative sugar binding 24.7 1.6E+02 0.0054 29.6 7.6 35 102-136 190-224 (461)
306 4a1g_A Mitotic checkpoint seri 24.4 74 0.0025 27.8 4.3 46 84-135 83-128 (152)
307 1zb1_A BRO1 protein; AIP1, BRO 24.1 5.2E+02 0.018 25.3 11.4 35 220-254 123-163 (392)
308 2wvi_A Mitotic checkpoint seri 23.1 81 0.0028 27.9 4.4 29 221-249 97-125 (164)
309 3ax2_A Mitochondrial import re 22.9 52 0.0018 25.3 2.7 25 279-303 22-46 (73)
310 3esl_A Checkpoint serine/threo 22.8 80 0.0027 29.0 4.4 29 221-249 116-144 (202)
311 4aez_C MAD3, mitotic spindle c 22.2 81 0.0028 29.4 4.4 29 221-249 151-179 (223)
312 2a9u_A Ubiquitin carboxyl-term 22.1 3.5E+02 0.012 23.2 8.2 42 276-319 44-85 (144)
313 1om2_A Protein (mitochondrial 21.5 86 0.0029 25.3 3.8 26 279-304 25-50 (95)
314 3ax2_A Mitochondrial import re 21.0 82 0.0028 24.2 3.4 26 113-138 22-47 (73)
315 2qx5_A Nucleoporin NIC96; mRNA 20.8 3.3E+02 0.011 29.2 9.4 108 221-388 444-563 (661)
316 1wy6_A Hypothetical protein ST 20.7 2.4E+02 0.0083 24.8 6.7 60 65-135 93-152 (172)
317 2wb7_A PT26-6P; extra chromoso 20.6 1.4E+02 0.0047 31.2 6.0 42 83-124 449-490 (526)
No 1
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.94 E-value=9.1e-27 Score=245.38 Aligned_cols=143 Identities=8% Similarity=0.052 Sum_probs=127.7
Q ss_pred HHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 013867 227 GEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEV-ALAATFALGQLEAHMGNFGDAEEILTRTLTKTE 305 (435)
Q Consensus 227 a~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~-~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e 305 (435)
+.-+.+||+|++|+++|+++|+|.++. +| ++|+ ++.+++|||.+|..||+|++|+++|+|+|+|++
T Consensus 316 a~~~~~qg~~~eA~~l~~~aL~~~~~~--------lg-----~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~ 382 (490)
T 3n71_A 316 IDKARSEGLYHEVVKLCRECLEKQEPV--------FA-----DTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYM 382 (490)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHTTT--------BC-----TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHh--------cC-----CCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 445789999999999999999997554 44 2233 445889999999999999999999999999999
Q ss_pred HhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhc-CCCCCCCchhhhhccHHHHHHHhcCHHHHhh
Q 013867 306 ELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLK-APPLESEGVETKVDRTDIVALARGGYAEALS 384 (435)
Q Consensus 306 ~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k-~~~~~hp~~a~~l~nla~~~~a~G~yaeal~ 384 (435)
++||++||+||.+++|||.+|..||+|++| +++|+|||+|++ ++|++||+|+..+++++.++..+|+|.+|+.
T Consensus 383 ~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA------~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~ 456 (490)
T 3n71_A 383 KLYHHNNAQLGMAVMRAGLTNWHAGHIEVG------HGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEF 456 (490)
T ss_dssp HHSCTTCHHHHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHCCCHHHH------HHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998776 999999999995 7899999999999999999999999988877
Q ss_pred Hhhh
Q 013867 385 VQQN 388 (435)
Q Consensus 385 ~~~~ 388 (435)
.+..
T Consensus 457 ~~~~ 460 (490)
T 3n71_A 457 MYHK 460 (490)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7644
No 2
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.93 E-value=4.5e-24 Score=200.89 Aligned_cols=243 Identities=15% Similarity=0.197 Sum_probs=198.8
Q ss_pred cCCCCChHHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013867 53 INGLNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQ 132 (435)
Q Consensus 53 ~~g~~~~~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ 132 (435)
..|+++|..+..+.++|..+.. .|+|++|+.+|++++.+..+..++++|..+.++.++|.+|..+|+|++|++.|+
T Consensus 18 ~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 93 (311)
T 3nf1_A 18 GGGYEIPARLRTLHNLVIQYAS----QGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLN 93 (311)
T ss_dssp SSCTTSCHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3599999999999999999953 689999999999999999888888999999999999999999999999999999
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccc
Q 013867 133 KVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGL 212 (435)
Q Consensus 133 ral~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~ 212 (435)
+++.+.++.+ +++.
T Consensus 94 ~al~~~~~~~-----------------~~~~------------------------------------------------- 107 (311)
T 3nf1_A 94 DALAIREKTL-----------------GKDH------------------------------------------------- 107 (311)
T ss_dssp HHHHHHHHHH-----------------CTTC-------------------------------------------------
T ss_pred HHHHHHHHHh-----------------CCCC-------------------------------------------------
Confidence 9855432221 1110
Q ss_pred cccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHH
Q 013867 213 QEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGD 292 (435)
Q Consensus 213 ~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~e 292 (435)
+....+..++|.+|..+|+|++|+.+|++++++.++..+ .++ |. ...+++++|.+|..+|+|++
T Consensus 108 ----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~-~~~---------~~--~~~~~~~la~~~~~~~~~~~ 171 (311)
T 3nf1_A 108 ----PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG-KDH---------PD--VAKQLNNLALLCQNQGKYEE 171 (311)
T ss_dssp ----HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC-TTC---------HH--HHHHHHHHHHHHHTTTCHHH
T ss_pred ----hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcC-CCC---------hH--HHHHHHHHHHHHHHcCCHHH
Confidence 111234455678889999999999999999999765432 111 11 34578899999999999999
Q ss_pred HHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcC------------------
Q 013867 293 AEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKA------------------ 354 (435)
Q Consensus 293 Ae~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~------------------ 354 (435)
|+.+|++++.+.++.+|+++|....++.++|.+|..+|++++| +.+|++++++...
T Consensus 172 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A------~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 245 (311)
T 3nf1_A 172 VEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQA------ETLYKEILTRAHEREFGSVDDENKPIWMHAE 245 (311)
T ss_dssp HHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHH------HHHHHHHHHHHHHHHHC------CCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHH------HHHHHHHHHHHHHhcCCCCCcchHHHHHHHH
Confidence 9999999999999999999999999999999999999998876 8999999987421
Q ss_pred ------------------------CCCCCCchhhhhccHHHHHHHhcCHHHHhhHhh
Q 013867 355 ------------------------PPLESEGVETKVDRTDIVALARGGYAEALSVQQ 387 (435)
Q Consensus 355 ------------------------~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~~ 387 (435)
....+|+.+..+.+++.++..+|+|++|+..+.
T Consensus 246 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 302 (311)
T 3nf1_A 246 EREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEE 302 (311)
T ss_dssp HHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 122567777788889999999999988877663
No 3
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.93 E-value=6.2e-25 Score=231.40 Aligned_cols=146 Identities=17% Similarity=0.102 Sum_probs=128.2
Q ss_pred CChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 013867 77 KSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLY 156 (435)
Q Consensus 77 ~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~ 156 (435)
.++|+|++|+.+|+++|+|+++.+|++||+|+.+++|||.+|.+||+|++|+++|+++++|.++
T Consensus 320 ~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~---------------- 383 (490)
T 3n71_A 320 RSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMK---------------- 383 (490)
T ss_dssp HTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----------------
T ss_pred HhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH----------------
Confidence 3789999999999999999999999999999999999999999999999999988887443211
Q ss_pred HhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhch
Q 013867 157 LQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNF 236 (435)
Q Consensus 157 ~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y 236 (435)
.+|.+||+
T Consensus 384 ----------------------------------------------~lG~~Hp~-------------------------- 391 (490)
T 3n71_A 384 ----------------------------------------------LYHHNNAQ-------------------------- 391 (490)
T ss_dssp ----------------------------------------------HSCTTCHH--------------------------
T ss_pred ----------------------------------------------HcCCCCHH--------------------------
Confidence 23333321
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHH
Q 013867 237 LLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVG 316 (435)
Q Consensus 237 ~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va 316 (435)
++.+++|||.+|..||+|++|+++|+|||+|+++++|++||+|+
T Consensus 392 ------------------------------------~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 435 (490)
T 3n71_A 392 ------------------------------------LGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITK 435 (490)
T ss_dssp ------------------------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHH
T ss_pred ------------------------------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHH
Confidence 23468899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 317 VVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 317 ~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
.++++|+..+..+++|++| |.+|+++.+-.
T Consensus 436 ~~~~~l~~~~~e~~~~~~a------e~~~~~~~~~~ 465 (490)
T 3n71_A 436 DLEAMRMQTEMELRMFRQN------EFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHH
Confidence 9999999999999997766 99999998755
No 4
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.93 E-value=2.9e-24 Score=198.55 Aligned_cols=222 Identities=15% Similarity=0.154 Sum_probs=183.4
Q ss_pred ChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 013867 78 SDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYL 157 (435)
Q Consensus 78 s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~ 157 (435)
+.|++++|+.+|++++++.++.++.++|..+.++.+||.+|..+|+|++|++.|++++.+.++.+
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--------------- 77 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTL--------------- 77 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT---------------
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHc---------------
Confidence 67899999999999999999999999999999999999999999999999999999855432221
Q ss_pred hcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchH
Q 013867 158 QLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFL 237 (435)
Q Consensus 158 ~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~ 237 (435)
|++ + +....+..++|.+|..+|+|+
T Consensus 78 --~~~---------------------------------------------~--------~~~~~~~~~l~~~~~~~g~~~ 102 (283)
T 3edt_B 78 --GKD---------------------------------------------H--------PAVAATLNNLAVLYGKRGKYK 102 (283)
T ss_dssp --CTT---------------------------------------------C--------HHHHHHHHHHHHHHHTTTCHH
T ss_pred --CCc---------------------------------------------c--------hHHHHHHHHHHHHHHHhccHH
Confidence 111 0 112234556788899999999
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHH
Q 013867 238 LAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGV 317 (435)
Q Consensus 238 eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~ 317 (435)
+|+.+|++++++.++..+ .++ |. ...++.+||.+|..+|+|++|+.+|++++.+.++.+|+++|..+.
T Consensus 103 ~A~~~~~~al~~~~~~~~-~~~---------~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 170 (283)
T 3edt_B 103 EAEPLCKRALEIREKVLG-KFH---------PD--VAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAK 170 (283)
T ss_dssp HHHHHHHHHHHHHHHHHC-TTC---------HH--HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHcC-CCC---------hH--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 999999999999765433 111 11 345788999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhc------------------------------------------CC
Q 013867 318 VLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLK------------------------------------------AP 355 (435)
Q Consensus 318 ~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k------------------------------------------~~ 355 (435)
++.+||.+|..+|++++| +.+|++++++.. ..
T Consensus 171 ~~~~la~~~~~~g~~~~A------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (283)
T 3edt_B 171 TKNNLASCYLKQGKYQDA------ETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKAC 244 (283)
T ss_dssp HHHHHHHHHHHHTCHHHH------HHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CC
T ss_pred HHHHHHHHHHHcCCHHHH------HHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhc
Confidence 999999999999998876 899999998842 22
Q ss_pred CCCCCchhhhhccHHHHHHHhcCHHHHhhHhh
Q 013867 356 PLESEGVETKVDRTDIVALARGGYAEALSVQQ 387 (435)
Q Consensus 356 ~~~hp~~a~~l~nla~~~~a~G~yaeal~~~~ 387 (435)
+.++|+....+.+++.++..+|+|++|+..+.
T Consensus 245 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 276 (283)
T 3edt_B 245 KVDSPTVNTTLRSLGALYRRQGKLEAAHTLED 276 (283)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34677777788888999999999988877663
No 5
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=99.91 E-value=1.5e-24 Score=225.17 Aligned_cols=120 Identities=8% Similarity=0.043 Sum_probs=106.3
Q ss_pred HhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCC
Q 013867 232 ATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEV-ALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGS 310 (435)
Q Consensus 232 ~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~-~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~ 310 (435)
.+|+|++|+++|+++|+|.++. +| |+|+ ++.+++|||.+|..||+|++|+++|+|+|+|++++||+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~--------lg-----~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~ 376 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSV--------FE-----DSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPV 376 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTT--------BC-----TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCS
T ss_pred hccCHHHHHHHHHHHHHHhhCc--------cC-----hhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCC
Confidence 4789999999999999997554 44 2333 34588999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhc-CCCCCCCchhhhhccHH
Q 013867 311 HHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLK-APPLESEGVETKVDRTD 370 (435)
Q Consensus 311 ~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k-~~~~~hp~~a~~l~nla 370 (435)
+||+||.+|+|||.+|..||+|++| +++|+|||+|++ ++|++||.|+...+|+.
T Consensus 377 ~Hp~~a~~l~nLa~~~~~qg~~~eA------~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l~ 431 (433)
T 3qww_A 377 YSLNVASMWLKLGRLYMGLENKAAG------EKALKKAIAIMEVAHGKDHPYISEIKQEIE 431 (433)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHhccCHHHH------HHHHHHHHHHHHHHcCCCChHHHHHHHHHh
Confidence 9999999999999999999998776 999999999995 78999999997766553
No 6
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.91 E-value=7.6e-22 Score=195.05 Aligned_cols=299 Identities=16% Similarity=0.142 Sum_probs=221.4
Q ss_pred CChHHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013867 57 NSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVEN 136 (435)
Q Consensus 57 ~~~~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~ 136 (435)
..+..+..+...|..+.+ .|+|++|+.+|++++.+.. .+.+..+..+.++|.+|..+|+|++|++.|++++.
T Consensus 43 ~~~~~~~~l~~~g~~~~~----~g~~~~A~~~~~~al~~~~----~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 114 (411)
T 4a1s_A 43 GGSSMCLELALEGERLCN----AGDCRAGVAFFQAAIQAGT----EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLT 114 (411)
T ss_dssp -CHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCC----SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHH----hCcHHHHHHHHHHHHHhcc----cChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 347888899999998853 6899999999999998742 23345678999999999999999999999999998
Q ss_pred hhhhhH--HHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCC-------
Q 013867 137 FKNSIL--GVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGN------- 207 (435)
Q Consensus 137 i~e~~L--~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~------- 207 (435)
+.++.- .....++..++..|..+|.+..|...+..++.+...... ....+..+... +.+....|+
T Consensus 115 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~l-----~~~~~~~g~~~~~~~~ 188 (411)
T 4a1s_A 115 LAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGD-RLSEGRALYNL-----GNVYHAKGKHLGQRNP 188 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHH-----HHHHHHHHHHHHHHST
T ss_pred HHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhc-hHHHHHHHHHH-----HHHHHHcCcccccccc
Confidence 765431 122446778888899999999998888887777544331 01111111110 011111122
Q ss_pred ----------Ccccccc------------cccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccc
Q 013867 208 ----------LESGLQE------------EEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSC 265 (435)
Q Consensus 208 ----------h~~a~~~------------~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~ 265 (435)
++.|... .++....+..++|.+|..+|+|++|+.+|++++++..+...
T Consensus 189 ~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---------- 258 (411)
T 4a1s_A 189 GKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGD---------- 258 (411)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC----------
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCC----------
Confidence 2211110 01334456777899999999999999999999999643211
Q ss_pred cccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHH
Q 013867 266 NMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLY 345 (435)
Q Consensus 266 ~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly 345 (435)
......+++++|.+|..+|+|++|+.+|++++.+..+. .+++..+.++.++|.+|..+|++++| +.+|
T Consensus 259 ----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A------~~~~ 326 (411)
T 4a1s_A 259 ----RAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVEL--GEREVEAQSCYSLGNTYTLLHEFNTA------IEYH 326 (411)
T ss_dssp ----HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHH------HHHH
T ss_pred ----cHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHcCCHHHH------HHHH
Confidence 01133477899999999999999999999999999986 66788899999999999999998876 8999
Q ss_pred HHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHHHhhHhhhhhhH
Q 013867 346 RRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQQNRKDE 392 (435)
Q Consensus 346 ~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~~~r~~e 392 (435)
++++++.+.. .+++.....+.+++.++..+|+|++|+..+.+-..-
T Consensus 327 ~~al~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 327 NRHLAIAQEL-GDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHH-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHC-CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 9999998643 234556778889999999999999998877543333
No 7
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.90 E-value=2e-21 Score=189.61 Aligned_cols=312 Identities=14% Similarity=0.079 Sum_probs=224.8
Q ss_pred HHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 013867 60 PVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKN 139 (435)
Q Consensus 60 ~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e 139 (435)
..+..+...|..+. ..|+|++|+.+|++++.+.. .+.+..+.++.++|.+|..+|+|++|++.|++++.+.+
T Consensus 7 ~~~~~l~~~g~~~~----~~g~~~~A~~~~~~al~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 78 (406)
T 3sf4_A 7 ASCLELALEGERLC----KSGDCRAGVSFFEAAVQVGT----EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLAR 78 (406)
T ss_dssp CCHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHCC----SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----HhccHHHHHHHHHHHHhcCc----ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 34566778888874 36899999999999998742 23445688999999999999999999999999988765
Q ss_pred hhHH--HHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCC----------
Q 013867 140 SILG--VRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGN---------- 207 (435)
Q Consensus 140 ~~L~--i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~---------- 207 (435)
+.-. ....++..++..+..+|.++.|....+.++.+....... ...+..+... +.+....|+
T Consensus 79 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~l-----~~~~~~~g~~~~~~~~~~~ 152 (406)
T 3sf4_A 79 TIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK-VGEARALYNL-----GNVYHAKGKSFGCPGPQDV 152 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH-HHHHHHHHHH-----HHHHHHHHHTCC-------
T ss_pred hccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccc-cchHHHHHHH-----HHHHHHcCCcccccccchh
Confidence 4311 123467778888999999999988888877776543310 0000111000 111111122
Q ss_pred ----------Ccccccc------------cccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccc
Q 013867 208 ----------LESGLQE------------EEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSC 265 (435)
Q Consensus 208 ----------h~~a~~~------------~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~ 265 (435)
++.|... ..+....+..++|.+|..+|+|++|+.+|++++++..+...
T Consensus 153 ~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---------- 222 (406)
T 3sf4_A 153 GEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD---------- 222 (406)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTC----------
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCC----------
Confidence 1111100 02334556778899999999999999999999999643110
Q ss_pred cccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHH
Q 013867 266 NMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLY 345 (435)
Q Consensus 266 ~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly 345 (435)
......+++++|.+|..+|+|++|+.+|++++.+..+. .+++..+.++.++|.+|..+|++++| +..|
T Consensus 223 ----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A------~~~~ 290 (406)
T 3sf4_A 223 ----KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQL--KDRAVEAQSCYSLGNTYTLLQDYEKA------IDYH 290 (406)
T ss_dssp ----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHH------HHHH
T ss_pred ----cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhC--cCchHHHHHHHHHHHHHHHhCcHHHH------HHHH
Confidence 01133477899999999999999999999999999875 46788899999999999999998776 8999
Q ss_pred HHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHHHhhHhhhhhhH----------HHHHHHHHHHHhcccc
Q 013867 346 RRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQQNRKDE----------GERMKRWAEAAWRNRR 408 (435)
Q Consensus 346 ~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~~~r~~e----------ae~~~~~a~~~~~~~r 408 (435)
++++++.+.. .+++.....+.+++.++..+|+|++|+..+.+-... ++.+..++..++..++
T Consensus 291 ~~a~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 362 (406)
T 3sf4_A 291 LKHLAIAQEL-NDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGL 362 (406)
T ss_dssp HHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhc-CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhH
Confidence 9999998653 234556778889999999999999998876443322 3444456666654443
No 8
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.89 E-value=1e-20 Score=177.76 Aligned_cols=290 Identities=16% Similarity=0.107 Sum_probs=211.9
Q ss_pred HHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhh
Q 013867 62 VLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSI 141 (435)
Q Consensus 62 A~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~ 141 (435)
+..+...|..+. ..|+|++|+.+|++++.+.. .+.+..+..+.++|.+|..+|+|++|++.+++++.+.++.
T Consensus 5 ~~~l~~~g~~~~----~~g~~~~A~~~~~~al~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 76 (338)
T 3ro2_A 5 CLELALEGERLC----KSGDCRAGVSFFEAAVQVGT----EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI 76 (338)
T ss_dssp HHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHCC----SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----HhccHHHHHHHHHHHHhhCc----ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc
Confidence 446666777774 36899999999999998742 2344568899999999999999999999999998876543
Q ss_pred HH--HHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCC------------
Q 013867 142 LG--VRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGN------------ 207 (435)
Q Consensus 142 L~--i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~------------ 207 (435)
-. ....++..++..+..+|.+..|......++.+...... ....+..+... +.+....|+
T Consensus 77 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~l-----~~~~~~~~~~~~~~~~~~~~~ 150 (338)
T 3ro2_A 77 GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND-KVGEARALYNL-----GNVYHAKGKSFGCPGPQDTGE 150 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHH-----HHHHHHHHHTSSSSSCC----
T ss_pred cccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC-chHHHHHHHHH-----HHHHHHcCcccccchhhhhhh
Confidence 11 12345677888899999999998888888777654331 00001111100 011111122
Q ss_pred --------Ccccccc------------cccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccc
Q 013867 208 --------LESGLQE------------EEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNM 267 (435)
Q Consensus 208 --------h~~a~~~------------~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~ 267 (435)
++.|... ..+....+..++|.+|..+|+|++|+.+|++++++..+...
T Consensus 151 ~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~------------ 218 (338)
T 3ro2_A 151 FPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD------------ 218 (338)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC------------
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC------------
Confidence 1111100 01333456677889999999999999999999999643211
Q ss_pred cchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHH
Q 013867 268 ALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRR 347 (435)
Q Consensus 268 ~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~r 347 (435)
......++.++|.+|..+|+|++|+.+|++++.+..+. .+++..+.++.++|.+|..+|++++| ...|++
T Consensus 219 --~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A------~~~~~~ 288 (338)
T 3ro2_A 219 --KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQL--KDRAVEAQSCYSLGNTYTLLQDYEKA------IDYHLK 288 (338)
T ss_dssp --HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHH------HHHHHH
T ss_pred --hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh--cchhHHHHHHHHHHHHHHHhcCHHHH------HHHHHH
Confidence 11133477899999999999999999999999999875 56788899999999999999998776 899999
Q ss_pred HHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHHHhhHhhh
Q 013867 348 ALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQQN 388 (435)
Q Consensus 348 AL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~~~ 388 (435)
++++.... .+.+.....+.+++.++..+|++++|+..+..
T Consensus 289 a~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 328 (338)
T 3ro2_A 289 HLAIAQEL-KDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 328 (338)
T ss_dssp HHHHHHHH-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhc-CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 99998543 23445677788999999999999999887743
No 9
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=99.89 E-value=5.6e-23 Score=212.94 Aligned_cols=129 Identities=19% Similarity=0.138 Sum_probs=113.7
Q ss_pred HHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 013867 228 EYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEEL 307 (435)
Q Consensus 228 ~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~ 307 (435)
.-+..+|+|++|+++|+++|+|.++ .+|+.| |. ++.+++|||.+|..||+|++|+++|+|+|+|++++
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~--------~lg~~h--~~--~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~ 362 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSE--------RLPDIN--IY--QLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIF 362 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSC--------CCCTTS--HH--HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccC--------cCCccc--hH--HHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHH
Confidence 3466899999999999999999533 455322 21 44588999999999999999999999999999999
Q ss_pred hCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhc-CCCCCCCchhhhhccHHHHHH
Q 013867 308 FGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLK-APPLESEGVETKVDRTDIVAL 374 (435)
Q Consensus 308 lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k-~~~~~hp~~a~~l~nla~~~~ 374 (435)
||++||+||.+|+|||.+|..||+|++| +++|+||++|++ ++|++||.|+..++|++.+..
T Consensus 363 lg~~Hp~~a~~l~nLa~~~~~~g~~~eA------~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~ 424 (429)
T 3qwp_A 363 FPGSHPVRGVQVMKVGKLQLHQGMFPQA------MKNLRLAFDIMRVTHGREHSLIEDLILLLEECDA 424 (429)
T ss_dssp SCSSCHHHHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHH
T ss_pred cCCCChHHHHHHHHHHHHHHhcCCHHHH------HHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 9999999999999999999999998776 999999999995 689999999999998887764
No 10
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.88 E-value=1.8e-21 Score=179.75 Aligned_cols=208 Identities=17% Similarity=0.199 Sum_probs=171.6
Q ss_pred CCCCChHHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013867 54 NGLNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQK 133 (435)
Q Consensus 54 ~g~~~~~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~r 133 (435)
.++++|..+..+.++|..+.. .|+|++|+.+|++++.+.++.+|+++|..+.++++||.+|..+|+|++|++.|++
T Consensus 35 ~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 110 (283)
T 3edt_B 35 SGHDHPDVATMLNILALVYRD----QNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKR 110 (283)
T ss_dssp HCSSSHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHH----cccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 478999999999999999953 6899999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCccccc
Q 013867 134 VENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQ 213 (435)
Q Consensus 134 al~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~ 213 (435)
++.+.++.. +++ +
T Consensus 111 al~~~~~~~-----------------~~~---------------------------------------------~----- 123 (283)
T 3edt_B 111 ALEIREKVL-----------------GKF---------------------------------------------H----- 123 (283)
T ss_dssp HHHHHHHHH-----------------CTT---------------------------------------------C-----
T ss_pred HHHHHHHHc-----------------CCC---------------------------------------------C-----
Confidence 855432221 111 0
Q ss_pred ccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHH
Q 013867 214 EEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDA 293 (435)
Q Consensus 214 ~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eA 293 (435)
+....+..++|.+|..+|+|++|+.+|++++++.++..+ .++ |. ...++.+||.+|..+|+|++|
T Consensus 124 ---~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~---------~~--~~~~~~~la~~~~~~g~~~~A 188 (283)
T 3edt_B 124 ---PDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLG-PDD---------PN--VAKTKNNLASCYLKQGKYQDA 188 (283)
T ss_dssp ---HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSC-TTC---------HH--HHHHHHHHHHHHHHHTCHHHH
T ss_pred ---hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC-CCC---------HH--HHHHHHHHHHHHHHcCCHHHH
Confidence 112234556788899999999999999999999765433 111 11 335778999999999999999
Q ss_pred HHHHHHHHHHHHH-----------------------------------------hhCCCChhHHHHHHHHHHHHHHhhhh
Q 013867 294 EEILTRTLTKTEE-----------------------------------------LFGSHHPKVGVVLTCLALMFRNKAMQ 332 (435)
Q Consensus 294 e~l~~rAL~I~e~-----------------------------------------~lG~~HP~va~~L~nLA~ly~~qG~~ 332 (435)
+.+|++++.+..+ .++++||..+.++.+||.+|..+|++
T Consensus 189 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 268 (283)
T 3edt_B 189 ETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKL 268 (283)
T ss_dssp HHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCH
Confidence 9999999998543 34568999999999999999999998
Q ss_pred hhhhhhHHHHHHHHHHHHHhc
Q 013867 333 EHSSALLIQEGLYRRALEFLK 353 (435)
Q Consensus 333 e~A~~~~~Ae~Ly~rAL~I~k 353 (435)
++| +.+|++++++.|
T Consensus 269 ~~A------~~~~~~al~~~k 283 (283)
T 3edt_B 269 EAA------HTLEDCASRNRK 283 (283)
T ss_dssp HHH------HHHHHHHHTTC-
T ss_pred HHH------HHHHHHHHHhhC
Confidence 876 899999998864
No 11
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.88 E-value=1.4e-20 Score=185.63 Aligned_cols=158 Identities=15% Similarity=0.120 Sum_probs=116.2
Q ss_pred cchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 013867 217 GCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEI 296 (435)
Q Consensus 217 ~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l 296 (435)
|....+..++|.++..+|+|++|+..|++++.+. |++ ..++++||.+|..+|++++|+..
T Consensus 200 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~------------------p~~--~~~~~~l~~~~~~~g~~~~A~~~ 259 (388)
T 1w3b_A 200 PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS------------------PNH--AVVHGNLACVYYEQGLIDLAIDT 259 (388)
T ss_dssp TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC------------------TTC--HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC------------------cCC--HHHHHHHHHHHHHcCCHHHHHHH
Confidence 4445566667777777777777777777777760 111 13567899999999999999999
Q ss_pred HHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHh
Q 013867 297 LTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALAR 376 (435)
Q Consensus 297 ~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~ 376 (435)
|++++++ +|+...+++++|.+|..+|++++| +.+|++++++. |+....+++++.++..+
T Consensus 260 ~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A------~~~~~~al~~~-------p~~~~~~~~l~~~~~~~ 318 (388)
T 1w3b_A 260 YRRAIEL--------QPHFPDAYCNLANALKEKGSVAEA------EDCYNTALRLC-------PTHADSLNNLANIKREQ 318 (388)
T ss_dssp HHHHHHT--------CSSCHHHHHHHHHHHHHHSCHHHH------HHHHHHHHHHC-------TTCHHHHHHHHHHHHTT
T ss_pred HHHHHhh--------CCCCHHHHHHHHHHHHHcCCHHHH------HHHHHHHHhhC-------cccHHHHHHHHHHHHHc
Confidence 9999874 344455788999999999997766 88899998874 33344677889999999
Q ss_pred cCHHHHhhHhhhhhh----HHHHHHHHHHHHhcccchhHHHHh
Q 013867 377 GGYAEALSVQQNRKD----EGERMKRWAEAAWRNRRVSLAEAL 415 (435)
Q Consensus 377 G~yaeal~~~~~r~~----eae~~~~~a~~~~~~~r~~l~~~l 415 (435)
|+|++|+..+.+-.. -.+.+...+..+++.+++..|..+
T Consensus 319 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 361 (388)
T 1w3b_A 319 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMH 361 (388)
T ss_dssp TCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999887643322 256677788888888887776543
No 12
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.88 E-value=1.1e-20 Score=184.55 Aligned_cols=273 Identities=14% Similarity=0.043 Sum_probs=196.3
Q ss_pred CCCCh-HHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013867 55 GLNSN-PVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQK 133 (435)
Q Consensus 55 g~~~~-~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~r 133 (435)
.+++| ..+..+.++|..+.+ .|+|++|+.+|++++.+. |..+.+++++|.+|..+|+|++|++.|++
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~----~g~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 124 (365)
T 4eqf_A 57 HTENPFKDWPGAFEEGLKRLK----EGDLPVTILFMEAAILQD--------PGDAEAWQFLGITQAENENEQAAIVALQR 124 (365)
T ss_dssp CSSCTTTTCTTHHHHHHHHHH----HTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccCCcccchhHHHHHHHHHHH----CCCHHHHHHHHHHHHHhC--------cCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 34444 335567888888853 689999999999999764 55678899999999999999999999999
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCch------------hc-hhhHHHHHHHHHHH
Q 013867 134 VENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENY------------KT-YGAVNSRANAVKGL 200 (435)
Q Consensus 134 al~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~------------~e-aeal~~~a~Ai~~~ 200 (435)
++.+.+.. ..++.+++..+..+|.+..|....+.++.+........+ +. .........|+...
T Consensus 125 al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 200 (365)
T 4eqf_A 125 CLELQPNN----LKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELY 200 (365)
T ss_dssp HHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHH
T ss_pred HHhcCCCC----HHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHH
Confidence 98876543 335677888899999999988888877765322110000 00 00011112222211
Q ss_pred HHHhcCCCcccccccccc--hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHH
Q 013867 201 VELAHGNLESGLQEEEGC--TGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATF 278 (435)
Q Consensus 201 ~~~lgg~h~~a~~~~~~~--~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~ 278 (435)
.+.+.- .|. ...+..++|.+|..+|+|++|+.+|++++++. + . ...+++
T Consensus 201 ~~al~~---------~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------p-~-----------~~~~~~ 251 (365)
T 4eqf_A 201 LEAAHQ---------NGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR--------P-E-----------DYSLWN 251 (365)
T ss_dssp HHHHHH---------SCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------T-T-----------CHHHHH
T ss_pred HHHHHh---------CcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------C-C-----------CHHHHH
Confidence 111111 122 34677889999999999999999999999981 1 1 124678
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcC-CCC
Q 013867 279 ALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKA-PPL 357 (435)
Q Consensus 279 nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~-~~~ 357 (435)
+||.+|..+|+|++|+..|++++.+ +|+...++.+||.+|..+|++++| ...|++++++... .++
T Consensus 252 ~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A------~~~~~~al~~~~~~~~~ 317 (365)
T 4eqf_A 252 RLGATLANGDRSEEAVEAYTRALEI--------QPGFIRSRYNLGISCINLGAYREA------VSNFLTALSLQRKSRNQ 317 (365)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCCHHH------HHHHHHHHHHHHCC---
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc--------CCCchHHHHHHHHHHHHCCCHHHH------HHHHHHHHHhCcccCCC
Confidence 9999999999999999999999998 678889999999999999998776 8999999999943 355
Q ss_pred CCCch----hhhhccHHHHHHHhcCHHHHhhHh
Q 013867 358 ESEGV----ETKVDRTDIVALARGGYAEALSVQ 386 (435)
Q Consensus 358 ~hp~~----a~~l~nla~~~~a~G~yaeal~~~ 386 (435)
++++. .....+++.++...|+++.+....
T Consensus 318 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 350 (365)
T 4eqf_A 318 QQVPHPAISGNIWAALRIALSLMDQPELFQAAN 350 (365)
T ss_dssp ---------CHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred cccchhhhHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 55542 556678888888888887766554
No 13
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.87 E-value=7.8e-20 Score=180.26 Aligned_cols=289 Identities=18% Similarity=0.175 Sum_probs=208.7
Q ss_pred CCCChHHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013867 55 GLNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKV 134 (435)
Q Consensus 55 g~~~~~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ra 134 (435)
.|+++.+ +..++..+. ..|++++|+.++++++.+ +|..+.++++||.+|..+|+|++|++.|+++
T Consensus 29 ~p~~~~~---~~~l~~~~~----~~~~~~~a~~~~~~a~~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 93 (388)
T 1w3b_A 29 EPDNTGV---LLLLSSIHF----QCRRLDRSAHFSTLAIKQ--------NPLLAEAYSNLGNVYKERGQLQEAIEHYRHA 93 (388)
T ss_dssp CTTCHHH---HHHHHHHHH----HTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCCCHHH---HHHHHHHHH----HcCCHHHHHHHHHHHHhc--------CCCchHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3555443 445555553 257899999999999965 4677889999999999999999999999999
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccc
Q 013867 135 ENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQE 214 (435)
Q Consensus 135 l~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~ 214 (435)
+.+.+.. +.++.+++..+..+|....|......++.+. +... ...... +.+....|++++|...
T Consensus 94 l~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----p~~~---~~~~~l-----~~~~~~~g~~~~A~~~ 157 (388)
T 1w3b_A 94 LRLKPDF----IDGYINLAAALVAAGDMEGAVQAYVSALQYN----PDLY---CVRSDL-----GNLLKALGRLEEAKAC 157 (388)
T ss_dssp HHHCTTC----HHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC----TTCT---HHHHHH-----HHHHHTTSCHHHHHHH
T ss_pred HHcCcch----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCcH---HHHHHH-----HHHHHHccCHHHHHHH
Confidence 8765543 2345667777888898888877766654431 1000 000000 0001111222222111
Q ss_pred c------ccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcC
Q 013867 215 E------EGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMG 288 (435)
Q Consensus 215 ~------~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG 288 (435)
+ +|....+..+++.+|..+|++++|+.+|++++++. + . ...+++++|.+|..+|
T Consensus 158 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------p-~-----------~~~~~~~lg~~~~~~~ 217 (388)
T 1w3b_A 158 YLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD--------P-N-----------FLDAYINLGNVLKEAR 217 (388)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--------T-T-----------CHHHHHHHHHHHHTTT
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------C-C-----------cHHHHHHHHHHHHHcC
Confidence 1 24556677889999999999999999999999881 1 1 1246789999999999
Q ss_pred CHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhcc
Q 013867 289 NFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDR 368 (435)
Q Consensus 289 ~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~n 368 (435)
+|++|+..|++++.+ +|+...+++++|.+|..+|++++| +..|++++++. |+......+
T Consensus 218 ~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A------~~~~~~al~~~-------p~~~~~~~~ 276 (388)
T 1w3b_A 218 IFDRAVAAYLRALSL--------SPNHAVVHGNLACVYYEQGLIDLA------IDTYRRAIELQ-------PHFPDAYCN 276 (388)
T ss_dssp CTTHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHTC-------SSCHHHHHH
T ss_pred CHHHHHHHHHHHHhh--------CcCCHHHHHHHHHHHHHcCCHHHH------HHHHHHHHhhC-------CCCHHHHHH
Confidence 999999999999987 466677899999999999998776 89999999863 333446788
Q ss_pred HHHHHHHhcCHHHHhhHhhhhhhH----HHHHHHHHHHHhcccchhHHHHh
Q 013867 369 TDIVALARGGYAEALSVQQNRKDE----GERMKRWAEAAWRNRRVSLAEAL 415 (435)
Q Consensus 369 la~~~~a~G~yaeal~~~~~r~~e----ae~~~~~a~~~~~~~r~~l~~~l 415 (435)
++.++..+|+|++|+..+.+-... .+.+...+..+.+.+++..+..+
T Consensus 277 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 327 (388)
T 1w3b_A 277 LANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRL 327 (388)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999999877443222 56677788888888887766543
No 14
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=99.87 E-value=1.1e-21 Score=203.62 Aligned_cols=144 Identities=15% Similarity=0.088 Sum_probs=116.8
Q ss_pred CCChHHHHHHHHHHHHhh---hccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013867 56 LNSNPVVLQMINYALSHA---RSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQ 132 (435)
Q Consensus 56 ~~~~~vA~~m~~~a~~~~---r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ 132 (435)
|.......+|+.++.... +.....|+|++|+.+|+++|+|.++.+|++||+|+.+++|||.+|.+||+|++|+++|+
T Consensus 285 ~~~~e~v~~~~~~~~~~le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~ 364 (433)
T 3qww_A 285 PPQAEAIRDMVRYARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQ 364 (433)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHH
Confidence 444555566665544432 22346789999999999999999999999999999999999999999999999999888
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccc
Q 013867 133 KVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGL 212 (435)
Q Consensus 133 ral~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~ 212 (435)
++++|.++ .+|.+||+
T Consensus 365 ~aL~i~~~--------------------------------------------------------------~lG~~Hp~-- 380 (433)
T 3qww_A 365 KIIKPYSK--------------------------------------------------------------HYPVYSLN-- 380 (433)
T ss_dssp HHHHHHHH--------------------------------------------------------------HSCSSCHH--
T ss_pred HHHHHHHH--------------------------------------------------------------HcCCCChH--
Confidence 87443221 23343321
Q ss_pred cccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHH
Q 013867 213 QEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGD 292 (435)
Q Consensus 213 ~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~e 292 (435)
+..+++|||.+|..||+|+|
T Consensus 381 ------------------------------------------------------------~a~~l~nLa~~~~~qg~~~e 400 (433)
T 3qww_A 381 ------------------------------------------------------------VASMWLKLGRLYMGLENKAA 400 (433)
T ss_dssp ------------------------------------------------------------HHHHHHHHHHHHHHTTCHHH
T ss_pred ------------------------------------------------------------HHHHHHHHHHHHHhccCHHH
Confidence 22468899999999999999
Q ss_pred HHHHHHHHHHHHHHhhCCCChhHHHHHHHHH
Q 013867 293 AEEILTRTLTKTEELFGSHHPKVGVVLTCLA 323 (435)
Q Consensus 293 Ae~l~~rAL~I~e~~lG~~HP~va~~L~nLA 323 (435)
|+++|+|||+|+++++|++||.|+...+||.
T Consensus 401 A~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l~ 431 (433)
T 3qww_A 401 GEKALKKAIAIMEVAHGKDHPYISEIKQEIE 431 (433)
T ss_dssp HHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCChHHHHHHHHHh
Confidence 9999999999999999999999999999986
No 15
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.87 E-value=4.9e-20 Score=182.76 Aligned_cols=253 Identities=12% Similarity=0.119 Sum_probs=192.0
Q ss_pred HHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHH--HH
Q 013867 68 YALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILG--VR 145 (435)
Q Consensus 68 ~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~--i~ 145 (435)
.|..+. ..|+|++|+.+|++++.+.++. ++++..+.++++||.+|..+|+|++|+..|++++++.++.-. ..
T Consensus 109 ~g~~~~----~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 182 (383)
T 3ulq_A 109 RGMYEL----DQREYLSAIKFFKKAESKLIFV--KDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIR 182 (383)
T ss_dssp HHHHHH----HTTCHHHHHHHHHHHHTTGGGC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHH
T ss_pred HHHHHH----HhcCHHHHHHHHHHHHHHHhhC--CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHH
Confidence 555553 3689999999999999987765 667789999999999999999999999999999988765421 11
Q ss_pred -HHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHH
Q 013867 146 -VAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAAL 224 (435)
Q Consensus 146 -vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~ 224 (435)
..++.+++..|..+|.++.|....+.++.+.... ++ ++....+..
T Consensus 183 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--------------------------~~--------~~~~~~~~~ 228 (383)
T 3ulq_A 183 LLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAE--------------------------KQ--------PQLMGRTLY 228 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--------------------------TC--------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHc--------------------------CC--------hHHHHHHHH
Confidence 2245566666666666555544444333333221 11 122345677
Q ss_pred HHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 013867 225 SYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKT 304 (435)
Q Consensus 225 ~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~ 304 (435)
++|.+|..+|+|++|+.+|++|+++.++... . |. ...++++||.+|..+|+|++|..+|++|+.+.
T Consensus 229 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~---~---------~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 294 (383)
T 3ulq_A 229 NIGLCKNSQSQYEDAIPYFKRAIAVFEESNI---L---------PS--LPQAYFLITQIHYKLGKIDKAHEYHSKGMAYS 294 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---G---------GG--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc---c---------hh--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999653211 0 11 23578999999999999999999999999999
Q ss_pred HHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHHHhh
Q 013867 305 EELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALS 384 (435)
Q Consensus 305 e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yaeal~ 384 (435)
.+. ..|.....+++|+.+|..+|++ ..+++|+.+++.. ...|+......+++.++..+|+|++|+.
T Consensus 295 ~~~---~~~~~~~~~~~l~~~~~~~~~~----------~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~ 360 (383)
T 3ulq_A 295 QKA---GDVIYLSEFEFLKSLYLSGPDE----------EAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASA 360 (383)
T ss_dssp HHH---TCHHHHHHHHHHHHHHTSSCCH----------HHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHc---CCHHHHHHHHHHHHHHhCCCcH----------HHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 886 4566666689999999999984 4577777777543 4566777788899999999999999988
Q ss_pred Hhhh
Q 013867 385 VQQN 388 (435)
Q Consensus 385 ~~~~ 388 (435)
.+.+
T Consensus 361 ~~~~ 364 (383)
T 3ulq_A 361 YFLK 364 (383)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7743
No 16
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.87 E-value=2.7e-20 Score=181.60 Aligned_cols=292 Identities=14% Similarity=0.114 Sum_probs=214.3
Q ss_pred CCCChH-HHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013867 55 GLNSNP-VVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQK 133 (435)
Q Consensus 55 g~~~~~-vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~r 133 (435)
.|+.+. .+..+..+|..+.. .|+|++|+.+|++++.+..+. .++|..+.++.++|.+|..+|+|++|++.|++
T Consensus 39 ~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 112 (406)
T 3sf4_A 39 GTEDLKTLSAIYSQLGNAYFY----LHDYAKALEYHHHDLTLARTI--GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQR 112 (406)
T ss_dssp CCSCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 444444 57788889988853 689999999999999987665 56789999999999999999999999999999
Q ss_pred HHHhhhhhHH--HHHHHHHHHHHHHHhcCC--------------------CcchHHHHHHHHHHHHhcCCCchhchhhHH
Q 013867 134 VENFKNSILG--VRVAAMEALAGLYLQLGQ--------------------DDTSSVVADKCLQLCEKHKPENYKTYGAVN 191 (435)
Q Consensus 134 al~i~e~~L~--i~vaale~L~g~~~~~g~--------------------~~~A~~~~~~~~~l~~~~~~~~~~eaeal~ 191 (435)
++.+.++.-. ....++.+++..+..+|. +..|..+...++.+...... ....+..+
T Consensus 113 al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~- 190 (406)
T 3sf4_A 113 HLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGD-RAAQGRAF- 190 (406)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTC-HHHHHHHH-
T ss_pred HHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccC-cHHHHHHH-
Confidence 9988765422 123356777888888888 77777777776666544321 00000111
Q ss_pred HHHHHHHHHHHHhcCCCccccccc------------ccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCC
Q 013867 192 SRANAVKGLVELAHGNLESGLQEE------------EGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDM 259 (435)
Q Consensus 192 ~~a~Ai~~~~~~lgg~h~~a~~~~------------~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~ 259 (435)
...+.+....|+++.|...+ .+....+..++|.+|..+|+|++|+.+|++++++..+...
T Consensus 191 ----~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---- 262 (406)
T 3sf4_A 191 ----GNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD---- 262 (406)
T ss_dssp ----HHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC----
T ss_pred ----HHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcC----
Confidence 01111122223333322111 1223346677899999999999999999999999643210
Q ss_pred CCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhH
Q 013867 260 NTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALL 339 (435)
Q Consensus 260 ~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~ 339 (435)
......++.++|.+|..+|+|++|+.+|++++.+..+. .+++..+.++.++|.+|..+|++++|
T Consensus 263 ----------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A---- 326 (406)
T 3sf4_A 263 ----------RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL--NDRIGEGRACWSLGNAYTALGNHDQA---- 326 (406)
T ss_dssp ----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHTCHHHH----
T ss_pred ----------chHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhc--CCcHHHHHHHHHHHHHHHHcCCHHHH----
Confidence 11133577899999999999999999999999999886 35788999999999999999998776
Q ss_pred HHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHH
Q 013867 340 IQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAE 381 (435)
Q Consensus 340 ~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yae 381 (435)
...|++++++.+..+ +.+.....+.+++.++...|+..+
T Consensus 327 --~~~~~~al~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 327 --MHFAEKHLEISREVG-DKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp --HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred --HHHHHHHHHHHHHhc-CCcchhHHHHHHHHHHHHhhHhHH
Confidence 899999999997543 334567778889999999887643
No 17
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.87 E-value=5.9e-20 Score=172.69 Aligned_cols=205 Identities=19% Similarity=0.218 Sum_probs=169.1
Q ss_pred cCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHH
Q 013867 96 QPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQL 175 (435)
Q Consensus 96 ~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l 175 (435)
..+..|++||..+.++.++|..|..+|+|++|+.+|++++.+.++.. +++.
T Consensus 15 ~~q~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~-----------------~~~~------------ 65 (311)
T 3nf1_A 15 YFQGGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTS-----------------GHDH------------ 65 (311)
T ss_dssp SCSSSCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH-----------------CSSS------------
T ss_pred cccCCCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHc-----------------CCCC------------
Confidence 34568899999999999999999999999999999999855432210 1110
Q ss_pred HHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcc
Q 013867 176 CEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKD 255 (435)
Q Consensus 176 ~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~ 255 (435)
+....+...+|.+|..+|+|++|+.+|++++++.++..+
T Consensus 66 -----------------------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 104 (311)
T 3nf1_A 66 -----------------------------------------PDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG 104 (311)
T ss_dssp -----------------------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred -----------------------------------------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence 111234445677889999999999999999999765433
Q ss_pred cCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhh
Q 013867 256 FSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHS 335 (435)
Q Consensus 256 ~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A 335 (435)
.++ +. ...+++++|.+|..+|+|++|+.+|++++.+.++.+|+++|..+.+++++|.+|..+|++++|
T Consensus 105 -~~~---------~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 172 (311)
T 3nf1_A 105 -KDH---------PA--VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEV 172 (311)
T ss_dssp -TTC---------HH--HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred -CCC---------hH--HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHH
Confidence 111 11 335778999999999999999999999999999999999999999999999999999998776
Q ss_pred hhhHHHHHHHHHHHHHhc-CCCCCCCchhhhhccHHHHHHHhcCHHHHhhHhhh
Q 013867 336 SALLIQEGLYRRALEFLK-APPLESEGVETKVDRTDIVALARGGYAEALSVQQN 388 (435)
Q Consensus 336 ~~~~~Ae~Ly~rAL~I~k-~~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~~~ 388 (435)
+.+|++++++.+ ..+.++|.....+.+++.++..+|+|++|+.....
T Consensus 173 ------~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 220 (311)
T 3nf1_A 173 ------EYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKE 220 (311)
T ss_dssp ------HHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 899999999985 45788898888999999999999999999887633
No 18
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.85 E-value=1.5e-18 Score=173.13 Aligned_cols=305 Identities=14% Similarity=0.049 Sum_probs=216.6
Q ss_pred CCCChHHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013867 55 GLNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKV 134 (435)
Q Consensus 55 g~~~~~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ra 134 (435)
=+.+|..+..+..+|..+.+ .|+|++|+.+|++++.+ +|....+++++|.+|..+|+|++|+..|+++
T Consensus 19 ~~~~p~~~~~~~~~~~~~~~----~g~~~~A~~~~~~~l~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 86 (450)
T 2y4t_A 19 YFQSMADVEKHLELGKKLLA----AGQLADALSQFHAAVDG--------DPDNYIAYYRRATVFLAMGKSKAALPDLTKV 86 (450)
T ss_dssp ----CHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 36788889999999999854 58999999999999975 3556889999999999999999999999999
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHH-------HHHHHHHHhcCC
Q 013867 135 ENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRAN-------AVKGLVELAHGN 207 (435)
Q Consensus 135 l~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~-------Ai~~~~~~lgg~ 207 (435)
+.+.... ..++..++..+..+|.+..|....+.++.+ .+........+..... -.......-.|+
T Consensus 87 l~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 158 (450)
T 2y4t_A 87 IQLKMDF----TAARLQRGHLLLKQGKLDEAEDDFKKVLKS----NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGD 158 (450)
T ss_dssp HHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTS----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HhcCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 8776543 234567778888889888777665554321 1100000001000000 000011112233
Q ss_pred Cccccccc------ccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHH
Q 013867 208 LESGLQEE------EGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALG 281 (435)
Q Consensus 208 h~~a~~~~------~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa 281 (435)
++.|...+ .|....+...+|.+|..+|+|++|+.+|++++++. .. ...+++++|
T Consensus 159 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~-----------------~~~~~~~l~ 218 (450)
T 2y4t_A 159 YTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK---ND-----------------NTEAFYKIS 218 (450)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH---CS-----------------CHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CC-----------------CHHHHHHHH
Confidence 33322111 24455677889999999999999999999999882 11 124678999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHH---------HHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 282 QLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVL---------TCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 282 ~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L---------~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
.+|..+|++++|..+|++++.+ .|+++.+...+ .++|.+|..+|++++| ..+|++++++.
T Consensus 219 ~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A------~~~~~~~l~~~ 287 (450)
T 2y4t_A 219 TLYYQLGDHELSLSEVRECLKL-----DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDA------TSKYESVMKTE 287 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHH------HHHHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHHHHHHh-----CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH------HHHHHHHHhcC
Confidence 9999999999999999999964 67777766655 4559999999998776 89999999875
Q ss_pred cCCCCCCCc-hhhhhccHHHHHHHhcCHHHHhhHhhhhh----hHHHHHHHHHHHHhcccchhHHHH
Q 013867 353 KAPPLESEG-VETKVDRTDIVALARGGYAEALSVQQNRK----DEGERMKRWAEAAWRNRRVSLAEA 414 (435)
Q Consensus 353 k~~~~~hp~-~a~~l~nla~~~~a~G~yaeal~~~~~r~----~eae~~~~~a~~~~~~~r~~l~~~ 414 (435)
|+++. ....+.+++.++...|+|++|+.....-. ...+.+...+..++..+++..|..
T Consensus 288 ----p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~ 350 (450)
T 2y4t_A 288 ----PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQ 350 (450)
T ss_dssp ----CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ----CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHH
Confidence 33444 34567789999999999999988764432 226778888888888888776653
No 19
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.85 E-value=3.3e-19 Score=172.79 Aligned_cols=267 Identities=12% Similarity=0.028 Sum_probs=196.3
Q ss_pred HHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhh
Q 013867 62 VLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSI 141 (435)
Q Consensus 62 A~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~ 141 (435)
+..+.++|..+.+ .|+|++|+.+|++++.+. |....++.++|.+|..+|+|++|++.|++++.+.+..
T Consensus 64 ~~~~~~~~~~~~~----~g~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 131 (368)
T 1fch_A 64 HPQPFEEGLRRLQ----EGDLPNAVLLFEAAVQQD--------PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDN 131 (368)
T ss_dssp CSSHHHHHHHHHH----TTCHHHHHHHHHHHHHSC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred hHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCC
Confidence 4556788888853 589999999999999753 5567889999999999999999999999998876543
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCc------------------hhchhhHHHHHHHHHHHHHH
Q 013867 142 LGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPEN------------------YKTYGAVNSRANAVKGLVEL 203 (435)
Q Consensus 142 L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~------------------~~eaeal~~~a~Ai~~~~~~ 203 (435)
..++..++..+..+|.+..|......++.+........ .+..-.......|+....+.
T Consensus 132 ----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 207 (368)
T 1fch_A 132 ----QTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAA 207 (368)
T ss_dssp ----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHH
Confidence 23566777888889998888877776654321111000 00000111112222221111
Q ss_pred hcCCCcccccccccc--hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHH
Q 013867 204 AHGNLESGLQEEEGC--TGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALG 281 (435)
Q Consensus 204 lgg~h~~a~~~~~~~--~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa 281 (435)
+.- .|. ...+..++|.+|..+|+|++|+.+|++++.+. + . ...+++++|
T Consensus 208 ~~~---------~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------~-~-----------~~~~~~~l~ 258 (368)
T 1fch_A 208 VRL---------DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR--------P-N-----------DYLLWNKLG 258 (368)
T ss_dssp HHH---------STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------T-T-----------CHHHHHHHH
T ss_pred HHh---------CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------c-C-----------CHHHHHHHH
Confidence 111 122 45677889999999999999999999999881 1 1 114678999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCC-C---C
Q 013867 282 QLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAP-P---L 357 (435)
Q Consensus 282 ~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~-~---~ 357 (435)
.+|..+|+|++|+..|++++.+ +|+...++.++|.+|..+|++++| ...|++++++.... + .
T Consensus 259 ~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~g~~~~A------~~~~~~al~~~~~~~~~~~~ 324 (368)
T 1fch_A 259 ATLANGNQSEEAVAAYRRALEL--------QPGYIRSRYNLGISCINLGAHREA------VEHFLEALNMQRKSRGPRGE 324 (368)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHH------HHHHHHHHHHHHTC------
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHCCCHHHH------HHHHHHHHHhCCCCCCcccc
Confidence 9999999999999999999987 567778899999999999998776 89999999998432 2 2
Q ss_pred CCCchhhhhccHHHHHHHhcCHHHHhhHhh
Q 013867 358 ESEGVETKVDRTDIVALARGGYAEALSVQQ 387 (435)
Q Consensus 358 ~hp~~a~~l~nla~~~~a~G~yaeal~~~~ 387 (435)
.++.......+++.++...|++++|..+..
T Consensus 325 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 325 GGAMSENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp CCCCCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred ccchhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence 345567788899999999999998887764
No 20
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=99.84 E-value=2.5e-20 Score=192.99 Aligned_cols=140 Identities=14% Similarity=0.050 Sum_probs=115.8
Q ss_pred HHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhh
Q 013867 62 VLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSI 141 (435)
Q Consensus 62 A~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~ 141 (435)
+.+|.+-...+. .+|+|++|+.+|+++|++.++.+|++||+++.+++|||.+|..||+|++|++++++++++.++
T Consensus 287 ~~~ll~~ie~~~----~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~- 361 (429)
T 3qwp_A 287 VQESLKKIEELK----AHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRI- 361 (429)
T ss_dssp HHHHHHHHHHHH----HTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHH----hhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHH-
Confidence 445555444442 478999999999999999999999999999999999999999999999999888887443211
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhH
Q 013867 142 LGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGS 221 (435)
Q Consensus 142 L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~ 221 (435)
.+|++||+
T Consensus 362 -------------------------------------------------------------~lg~~Hp~----------- 369 (429)
T 3qwp_A 362 -------------------------------------------------------------FFPGSHPV----------- 369 (429)
T ss_dssp -------------------------------------------------------------HSCSSCHH-----------
T ss_pred -------------------------------------------------------------HcCCCChH-----------
Confidence 23333321
Q ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013867 222 AALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTL 301 (435)
Q Consensus 222 ~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL 301 (435)
+..+++|||.+|..||+|++|+++|+|||
T Consensus 370 ---------------------------------------------------~a~~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 370 ---------------------------------------------------RGVQVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp ---------------------------------------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ---------------------------------------------------HHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 22467899999999999999999999999
Q ss_pred HHHHHhhCCCChhHHHHHHHHHHHHHHh
Q 013867 302 TKTEELFGSHHPKVGVVLTCLALMFRNK 329 (435)
Q Consensus 302 ~I~e~~lG~~HP~va~~L~nLA~ly~~q 329 (435)
+|.++++|++||.|+.+++||+.+....
T Consensus 399 ~i~~~~lG~~Hp~~~~~~~~l~~~~~e~ 426 (429)
T 3qwp_A 399 DIMRVTHGREHSLIEDLILLLEECDANI 426 (429)
T ss_dssp HHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999987654
No 21
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.84 E-value=6.7e-19 Score=173.87 Aligned_cols=281 Identities=16% Similarity=0.076 Sum_probs=205.1
Q ss_pred cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCc
Q 013867 104 ESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPEN 183 (435)
Q Consensus 104 Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~ 183 (435)
.+..+..+..+|..+..+|+|++|+..|++++.+..........++..++..|..+|.+..|...++.++.+...... .
T Consensus 44 ~~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-~ 122 (411)
T 4a1s_A 44 GSSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMND-R 122 (411)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC-H
T ss_pred hhHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccC-c
Confidence 467888999999999999999999999999998765543333446778888899999999998888887777544331 0
Q ss_pred hhchhhHHHHHHHHHHHHHHhcCCCccccccc------------ccchhHHHHHHHHHHHHhhc----------------
Q 013867 184 YKTYGAVNSRANAVKGLVELAHGNLESGLQEE------------EGCTGSAALSYGEYLHATRN---------------- 235 (435)
Q Consensus 184 ~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~------------~~~~~~~a~~la~~~~~~G~---------------- 235 (435)
...+..+.. .+.+....|+++.|...+ ++....+..++|.+|..+|+
T Consensus 123 ~~~~~~~~~-----l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~ 197 (411)
T 4a1s_A 123 LGEAKSSGN-----LGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKE 197 (411)
T ss_dssp HHHHHHHHH-----HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHH
T ss_pred hHHHHHHHH-----HHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhH
Confidence 111111111 111122223333322111 23445677788999999999
Q ss_pred -hHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChh
Q 013867 236 -FLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPK 314 (435)
Q Consensus 236 -y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~ 314 (435)
|++|+.+|++++++..+... + + ....++.++|.+|..+|+|++|+.+|++++.+..+. .+++.
T Consensus 198 ~~~~A~~~~~~al~~~~~~~~---~---------~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~ 261 (411)
T 4a1s_A 198 ALTRAVEFYQENLKLMRDLGD---R---------G--AQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREF--GDRAA 261 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC---H---------H--HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCC---H---------H--HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc--CCcHH
Confidence 99999999999999654321 1 1 133577899999999999999999999999999884 46778
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHHHhhHhhhhhhH--
Q 013867 315 VGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQQNRKDE-- 392 (435)
Q Consensus 315 va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~~~r~~e-- 392 (435)
++.++.++|.+|..+|++++| +..|++++++.... .+++..+..+.+++.++..+|+|++|+..+..-...
T Consensus 262 ~~~~~~~la~~~~~~g~~~~A------~~~~~~al~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 334 (411)
T 4a1s_A 262 ERRANSNLGNSHIFLGQFEDA------AEHYKRTLALAVEL-GEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQ 334 (411)
T ss_dssp HHHHHHHHHHHHHTTTCHHHH------HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCcCHHHH------HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 899999999999999998776 89999999999643 333446778889999999999999998876432222
Q ss_pred --------HHHHHHHHHHHhcccchhHHH
Q 013867 393 --------GERMKRWAEAAWRNRRVSLAE 413 (435)
Q Consensus 393 --------ae~~~~~a~~~~~~~r~~l~~ 413 (435)
+..+..++..++..+++..|.
T Consensus 335 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 363 (411)
T 4a1s_A 335 ELGDRIGEARACWSLGNAHSAIGGHERAL 363 (411)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HCCChHHHHHHHHHHHHHHHHhccHHHHH
Confidence 345556777777777765543
No 22
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.84 E-value=3.4e-19 Score=176.97 Aligned_cols=254 Identities=11% Similarity=0.095 Sum_probs=191.3
Q ss_pred ChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHH--HH-HHHHHHHHH
Q 013867 78 SDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILG--VR-VAAMEALAG 154 (435)
Q Consensus 78 s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~--i~-vaale~L~g 154 (435)
..|+|++|+..|++++.+.... ++.+..+.++++||.+|..+|+|++|+..+++++++.++... .. ..++.+++.
T Consensus 113 ~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~ 190 (378)
T 3q15_A 113 DQKEYVEAIGYYREAEKELPFV--SDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAG 190 (378)
T ss_dssp HTTCHHHHHHHHHHHHTTGGGC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHH
T ss_pred HHCCHHHHHHHHHHHHHHHhhC--CChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHH
Confidence 4689999999999999988765 556889999999999999999999999999999988765432 12 235566666
Q ss_pred HHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhh
Q 013867 155 LYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATR 234 (435)
Q Consensus 155 ~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G 234 (435)
.|..+|.++.|....+.++.+....+ .. .....+..++|.+|..+|
T Consensus 191 ~y~~~~~~~~A~~~~~~al~~~~~~~-------------------------~~---------~~~~~~~~~lg~~y~~~~ 236 (378)
T 3q15_A 191 NYDDFKHYDKALPHLEAALELAMDIQ-------------------------ND---------RFIAISLLNIANSYDRSG 236 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTT-------------------------CH---------HHHHHHHHHHHHHHHHHT
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHcC-------------------------CH---------HHHHHHHHHHHHHHHHCC
Confidence 67666666555544444433332211 10 123456778899999999
Q ss_pred chHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChh
Q 013867 235 NFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPK 314 (435)
Q Consensus 235 ~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~ 314 (435)
+|++|+.+|++|+++.++... |. ...++.+||.+|..+|++++|..+|++|+.+..+. ..|.
T Consensus 237 ~~~~A~~~~~~al~~~~~~~~-------------~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~ 298 (378)
T 3q15_A 237 DDQMAVEHFQKAAKVSREKVP-------------DL--LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITAR---SHKF 298 (378)
T ss_dssp CHHHHHHHHHHHHHHHHHHCG-------------GG--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTT---CCSC
T ss_pred CHHHHHHHHHHHHHHHHhhCC-------------hh--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc---CCHH
Confidence 999999999999999754321 22 23578999999999999999999999999997654 2355
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHHHhhHhhhhhhHHH
Q 013867 315 VGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQQNRKDEGE 394 (435)
Q Consensus 315 va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~~~r~~eae 394 (435)
....+.+|+.+|..+|+. ..+.+|+.+++. ....|++.....+++.++..+|+|++|+..+.+-..-.+
T Consensus 299 ~~~~~~~l~~ly~~~~~~----------~~~~~al~~~~~-~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~ 367 (378)
T 3q15_A 299 YKELFLFLQAVYKETVDE----------RKIHDLLSYFEK-KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQE 367 (378)
T ss_dssp HHHHHHHHHHHHSSSCCH----------HHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcH----------HHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 555789999999998873 457777777754 234566677777999999999999999998855444344
Q ss_pred HH
Q 013867 395 RM 396 (435)
Q Consensus 395 ~~ 396 (435)
++
T Consensus 368 ~~ 369 (378)
T 3q15_A 368 DI 369 (378)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 23
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.84 E-value=6.3e-19 Score=165.56 Aligned_cols=267 Identities=15% Similarity=0.126 Sum_probs=190.2
Q ss_pred CCCChH-HHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013867 55 GLNSNP-VVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQK 133 (435)
Q Consensus 55 g~~~~~-vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~r 133 (435)
.|+++. .+..+..+|..+.. .|+|++|+.+|++++.+..+. .++|..+.++.++|.+|..+|+|++|++.|++
T Consensus 35 ~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 108 (338)
T 3ro2_A 35 GTEDLKTLSAIYSQLGNAYFY----LHDYAKALEYHHHDLTLARTI--GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQR 108 (338)
T ss_dssp CCSCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHhhcc--cccHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 344443 46778888888853 689999999999999987665 56788999999999999999999999999999
Q ss_pred HHHhhhhhHH--HHHHHHHHHHHHHHhcCC--------------------CcchHHHHHHHHHHHHhcCCCchhchhhHH
Q 013867 134 VENFKNSILG--VRVAAMEALAGLYLQLGQ--------------------DDTSSVVADKCLQLCEKHKPENYKTYGAVN 191 (435)
Q Consensus 134 al~i~e~~L~--i~vaale~L~g~~~~~g~--------------------~~~A~~~~~~~~~l~~~~~~~~~~eaeal~ 191 (435)
++.+.++.-. ....++..++..+..+|. +..|......++.+...... ....+.
T Consensus 109 al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~-~~~~~~--- 184 (338)
T 3ro2_A 109 HLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGD-RAAQGR--- 184 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTC-HHHHHH---
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCC-HHHHHH---
Confidence 9988765422 123356677788888888 66676666666555433221 000000
Q ss_pred HHHHHHHHHHHHhcCCCccccccc------------ccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCC
Q 013867 192 SRANAVKGLVELAHGNLESGLQEE------------EGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDM 259 (435)
Q Consensus 192 ~~a~Ai~~~~~~lgg~h~~a~~~~------------~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~ 259 (435)
.....+.+....|+++.|...+ .+....+..++|.+|..+|+|++|+.+|++++++..+...
T Consensus 185 --~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---- 258 (338)
T 3ro2_A 185 --AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD---- 258 (338)
T ss_dssp --HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC----
T ss_pred --HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcc----
Confidence 0001111112223333322111 1223346677899999999999999999999999643210
Q ss_pred CCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhH
Q 013867 260 NTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALL 339 (435)
Q Consensus 260 ~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~ 339 (435)
......++.++|.+|..+|+|++|..+|++++.+..+. .+++..+.++.+||.+|..+|++++|
T Consensus 259 ----------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A---- 322 (338)
T 3ro2_A 259 ----------RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL--KDRIGEGRACWSLGNAYTALGNHDQA---- 322 (338)
T ss_dssp ----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHHTCHHHH----
T ss_pred ----------hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc--CCcHHHHHHHHHHHHHHHHcCChHHH----
Confidence 11133567899999999999999999999999999876 34788899999999999999998876
Q ss_pred HHHHHHHHHHHHhcCC
Q 013867 340 IQEGLYRRALEFLKAP 355 (435)
Q Consensus 340 ~Ae~Ly~rAL~I~k~~ 355 (435)
...|++++++.+..
T Consensus 323 --~~~~~~a~~~~~~~ 336 (338)
T 3ro2_A 323 --MHFAEKHLEISREV 336 (338)
T ss_dssp --HHHHHHHHHC----
T ss_pred --HHHHHHHHHHHHhh
Confidence 89999999998654
No 24
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.84 E-value=8.6e-20 Score=183.96 Aligned_cols=291 Identities=12% Similarity=0.008 Sum_probs=181.3
Q ss_pred CChHHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCC-CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013867 57 NSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQ-LAESWRGISLLAMSTLLYESGNYVEAIEKLQKVE 135 (435)
Q Consensus 57 ~~~~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG-~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral 135 (435)
+++.-|...+++|..+. .+|+|++|+..|++++++.++..+ ..||.++.+++|||.+|..+|+|++|+..|++++
T Consensus 46 ~~~~~a~~yn~Lg~~~~----~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~ 121 (472)
T 4g1t_A 46 NREFKATMCNLLAYLKH----LKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVK 121 (472)
T ss_dssp C---CCHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHHHH----HCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 45556778888999884 378999999999999999877655 5689999999999999999999999999999999
Q ss_pred HhhhhhHHH---H-HHHHHHHHHHHHhc--CCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCc
Q 013867 136 NFKNSILGV---R-VAAMEALAGLYLQL--GQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLE 209 (435)
Q Consensus 136 ~i~e~~L~i---~-vaale~L~g~~~~~--g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~ 209 (435)
.|.+...+. . ..+..+++..+... +.++.|....++++.+- |. ..+.......+... ..-.++..
T Consensus 122 ~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~----p~---~~~~~~~~~~~~~~--l~~~~~~~ 192 (472)
T 4g1t_A 122 HVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK----PK---NPEFTSGLAIASYR--LDNWPPSQ 192 (472)
T ss_dssp HHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS----TT---CHHHHHHHHHHHHH--HHHSCCCC
T ss_pred HHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC----CC---CHHHHHHHHHHHHH--hcCchHHH
Confidence 887654321 0 11222222222222 23344544444433321 10 11111111110000 00112222
Q ss_pred cccccc------ccchhHHHHHHH----HHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHH
Q 013867 210 SGLQEE------EGCTGSAALSYG----EYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFA 279 (435)
Q Consensus 210 ~a~~~~------~~~~~~~a~~la----~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~n 279 (435)
.+.... +|....+..+++ .++...|++++|+.+|++++.+. + . ...++++
T Consensus 193 ~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~--------~-~-----------~~~~~~~ 252 (472)
T 4g1t_A 193 NAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA--------P-G-----------VTDVLRS 252 (472)
T ss_dssp CTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC--------S-S-----------CHHHHHH
T ss_pred HHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC--------c-c-----------HHHHHHH
Confidence 221110 233334444444 44556789999999999999881 1 1 1245789
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhh------hhHHHHHHHHHHHHHhc
Q 013867 280 LGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSS------ALLIQEGLYRRALEFLK 353 (435)
Q Consensus 280 La~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~------~~~~Ae~Ly~rAL~I~k 353 (435)
||.+|..+|++++|...|++|+++ +|+.+.++++||.+|..++....+. ....+...+++|+..++
T Consensus 253 lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 324 (472)
T 4g1t_A 253 AAKFYRRKDEPDKAIELLKKALEY--------IPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLK 324 (472)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCchHHHHHHHHHHHHh--------CCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 999999999999999999999986 7899999999999999887654321 11223445555555553
Q ss_pred CCCCCCCchhhhhccHHHHHHHhcCHHHHhhHhhh
Q 013867 354 APPLESEGVETKVDRTDIVALARGGYAEALSVQQN 388 (435)
Q Consensus 354 ~~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~~~ 388 (435)
.....+|+......+++.++..+|+|++|+..+.+
T Consensus 325 ~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~k 359 (472)
T 4g1t_A 325 KADEANDNLFRVCSILASLHALADQYEEAEYYFQK 359 (472)
T ss_dssp HHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHH
Confidence 21112344455677899999999999999887643
No 25
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.81 E-value=6.4e-18 Score=167.47 Aligned_cols=234 Identities=9% Similarity=-0.057 Sum_probs=179.6
Q ss_pred CCChHHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013867 56 LNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVE 135 (435)
Q Consensus 56 ~~~~~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral 135 (435)
++.+..+..+.++|..+.. .|+|++|+..|++++.+.++. +..++..+.++++||.+|..+|+|++|++.|++++
T Consensus 137 ~~~~~~a~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 211 (383)
T 3ulq_A 137 KDRIEKAEFFFKMSESYYY----MKQTYFSMDYARQAYEIYKEH-EAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAY 211 (383)
T ss_dssp CCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHTC-STTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 5677789999999999953 689999999999999998876 33478899999999999999999999999999998
Q ss_pred HhhhhhHHH--HHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCccccc
Q 013867 136 NFKNSILGV--RVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQ 213 (435)
Q Consensus 136 ~i~e~~L~i--~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~ 213 (435)
++.++.-.. ...++.+++.+|..+|.++.|......++.+... .+.
T Consensus 212 ~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~-------------------------~~~------- 259 (383)
T 3ulq_A 212 SMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEE-------------------------SNI------- 259 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-------------------------TTC-------
T ss_pred HHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh-------------------------hcc-------
Confidence 886644111 1224555666666665554443333322222111 111
Q ss_pred ccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHH
Q 013867 214 EEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDA 293 (435)
Q Consensus 214 ~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eA 293 (435)
.+....+..++|.+|..+|+|++|+.+|++|+++..+... +. ....+.+||.+|..+|++
T Consensus 260 --~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-------------~~--~~~~~~~l~~~~~~~~~~--- 319 (383)
T 3ulq_A 260 --LPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGD-------------VI--YLSEFEFLKSLYLSGPDE--- 319 (383)
T ss_dssp --GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-------------HH--HHHHHHHHHHHHTSSCCH---
T ss_pred --chhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCC-------------HH--HHHHHHHHHHHHhCCCcH---
Confidence 1334567788999999999999999999999999643211 11 223467899999999997
Q ss_pred HHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCC
Q 013867 294 EEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAP 355 (435)
Q Consensus 294 e~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~ 355 (435)
..+++|+.+.++. ..+|.+..++.+||.+|..+|++++| ...|++|+++.+..
T Consensus 320 -~~~~~al~~~~~~--~~~~~~~~~~~~la~~y~~~g~~~~A------~~~~~~al~~~~~i 372 (383)
T 3ulq_A 320 -EAIQGFFDFLESK--MLYADLEDFAIDVAKYYHERKNFQKA------SAYFLKVEQVRQLI 372 (383)
T ss_dssp -HHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHHTSC
T ss_pred -HHHHHHHHHHHHC--cCHHHHHHHHHHHHHHHHHCCCHHHH------HHHHHHHHHHHHHh
Confidence 6788888888887 78999999999999999999998877 89999999999754
No 26
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.81 E-value=1.4e-18 Score=175.04 Aligned_cols=309 Identities=8% Similarity=-0.030 Sum_probs=189.2
Q ss_pred CCCChHHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHH--cCCHHHHHHHHH
Q 013867 55 GLNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYE--SGNYVEAIEKLQ 132 (435)
Q Consensus 55 g~~~~~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~--qGky~eA~~l~~ 132 (435)
...+|.++..+.|+|.++. .+|+|++|+..|++++.|.++..++.|+..+.++.++|..+.. +++|++|++.|+
T Consensus 87 ~~~~~~~~~~~~nla~~y~----~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~ 162 (472)
T 4g1t_A 87 DQAEIRSLVTWGNYAWVYY----HMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFE 162 (472)
T ss_dssp GGCTTTTHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHH----HcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHH
Confidence 3458889999999999994 3799999999999999999999999999999999999987665 457999999999
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccc
Q 013867 133 KVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGL 212 (435)
Q Consensus 133 ral~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~ 212 (435)
+++.+.+....... .+..+.......+....|......++.+- +. ...........+..+ ....++.+.+.
T Consensus 163 kal~~~p~~~~~~~-~~~~~~~~l~~~~~~~~al~~~~~al~l~----p~---~~~~~~~l~~~~~~~-~~~~~~~~~a~ 233 (472)
T 4g1t_A 163 KALEKKPKNPEFTS-GLAIASYRLDNWPPSQNAIDPLRQAIRLN----PD---NQYLKVLLALKLHKM-REEGEEEGEGE 233 (472)
T ss_dssp HHHHHSTTCHHHHH-HHHHHHHHHHHSCCCCCTHHHHHHHHHHC----SS---CHHHHHHHHHHHHHC-C------CHHH
T ss_pred HHHHhCCCCHHHHH-HHHHHHHHhcCchHHHHHHHHHHHHhhcC----Cc---chHHHHHHHHHHHHH-HhhhhHHHHHH
Confidence 99988765432211 11111111223455556655554444331 00 001111111000000 00001111111
Q ss_pred c------ccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccc---------------------
Q 013867 213 Q------EEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSC--------------------- 265 (435)
Q Consensus 213 ~------~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~--------------------- 265 (435)
. ..+|....+..++|.+|..+|+|++|+.+|++|+++.-.... -...+|.+
T Consensus 234 ~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~--~~~~lg~~y~~~~~~~~~~~~~~~~~~~~ 311 (472)
T 4g1t_A 234 KLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAY--LHCQIGCCYRAKVFQVMNLRENGMYGKRK 311 (472)
T ss_dssp HHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH--HHHHHHHHHHHHHHHHHHC------CHHH
T ss_pred HHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHH--HHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 0 012555677788899999999999999999999876200000 00000000
Q ss_pred ----------------cccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHH-HH
Q 013867 266 ----------------NMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMF-RN 328 (435)
Q Consensus 266 ----------------~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly-~~ 328 (435)
...|+ ...++.++|.+|..+|+|++|+++|++||.+ .+++......+.++|.++ ..
T Consensus 312 ~~~~~~~A~~~~~~a~~~~~~--~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~-----~~~~~~~~~~~~~~~~~~~~~ 384 (472)
T 4g1t_A 312 LLELIGHAVAHLKKADEANDN--LFRVCSILASLHALADQYEEAEYYFQKEFSK-----ELTPVAKQLLHLRYGNFQLYQ 384 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHCTT--TCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS-----CCCHHHHHHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHhhcCCc--hhhhhhhHHHHHHHhccHHHHHHHHHHHHhc-----CCCChHHHHHHHHHHHHHHHH
Confidence 00000 0113468999999999999999999999986 345555556677888654 46
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHhcCC-----------------CCCCCchhhhhccHHHHHHHhcCHHHHhhHhhhhhh
Q 013867 329 KAMQEHSSALLIQEGLYRRALEFLKAP-----------------PLESEGVETKVDRTDIVALARGGYAEALSVQQNRKD 391 (435)
Q Consensus 329 qG~~e~A~~~~~Ae~Ly~rAL~I~k~~-----------------~~~hp~~a~~l~nla~~~~a~G~yaeal~~~~~r~~ 391 (435)
+|++++| +..|++||+|.... -..+|+.+..+++++.++..+|+|++|+..+++..+
T Consensus 385 ~~~~~~A------i~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe 458 (472)
T 4g1t_A 385 MKCEDKA------IHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLE 458 (472)
T ss_dssp SSCHHHH------HHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------
T ss_pred CCCHHHH------HHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 7777665 88899999875211 012566677899999999999999999998866443
No 27
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.81 E-value=4e-17 Score=155.69 Aligned_cols=298 Identities=12% Similarity=0.029 Sum_probs=209.4
Q ss_pred HHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhh
Q 013867 62 VLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSI 141 (435)
Q Consensus 62 A~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~ 141 (435)
+..+..+|..+. ..|+|++|+.+|++++... |....++.++|.+|..+|+|++|+..|++++.+.+..
T Consensus 3 ~~~~~~~~~~~~----~~g~~~~A~~~~~~~l~~~--------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 70 (359)
T 3ieg_A 3 VEKHLELGKKLL----AAGQLADALSQFHAAVDGD--------PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDF 70 (359)
T ss_dssp HHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHH----HcCCHHHHHHHHHHHHhhC--------cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc
Confidence 345677787774 3689999999999999753 4456789999999999999999999999998776543
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHH-------HHHHHHHHhcCCCcccccc
Q 013867 142 LGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRAN-------AVKGLVELAHGNLESGLQE 214 (435)
Q Consensus 142 L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~-------Ai~~~~~~lgg~h~~a~~~ 214 (435)
. .++..++..+..+|.+..|......++.+. +.............. -.........|+++.|...
T Consensus 71 ~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~ 142 (359)
T 3ieg_A 71 T----AARLQRGHLLLKQGKLDEAEDDFKKVLKSN----PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITF 142 (359)
T ss_dssp H----HHHHHHHHHHHHHTCHHHHHHHHHHHHTSC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred c----hHHHHHHHHHHHcCChHHHHHHHHHHHhcC----CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 2 345566777778888877766555543321 100001111111100 0001111223443333221
Q ss_pred c------ccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcC
Q 013867 215 E------EGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMG 288 (435)
Q Consensus 215 ~------~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG 288 (435)
+ .|....+...+|.++..+|+|++|+.+|++++++. + . ...++.++|.+|..+|
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------~-~-----------~~~~~~~la~~~~~~~ 202 (359)
T 3ieg_A 143 LDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK--------S-D-----------NTEAFYKISTLYYQLG 202 (359)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--------S-C-----------CHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------C-C-----------CHHHHHHHHHHHHHcC
Confidence 1 24456677888999999999999999999999761 1 1 1145789999999999
Q ss_pred CHHHHHHHHHHHHHHHHHhhCCCChhHHHHHH---------HHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCC
Q 013867 289 NFGDAEEILTRTLTKTEELFGSHHPKVGVVLT---------CLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLES 359 (435)
Q Consensus 289 ~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~---------nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~h 359 (435)
+|++|...|++++.+ .|+++.+...+. ++|.+|..+|++++| ...|++++++. +++
T Consensus 203 ~~~~A~~~~~~a~~~-----~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A------~~~~~~~~~~~----~~~ 267 (359)
T 3ieg_A 203 DHELSLSEVRECLKL-----DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDA------TSKYESVMKTE----PSV 267 (359)
T ss_dssp CHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHC----CSS
T ss_pred CHHHHHHHHHHHHhh-----CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH------HHHHHHHHhcC----CCc
Confidence 999999999999975 578888665554 459999999998776 89999999876 233
Q ss_pred Cc-hhhhhccHHHHHHHhcCHHHHhhHhhhhhh----HHHHHHHHHHHHhcccchhHHHH
Q 013867 360 EG-VETKVDRTDIVALARGGYAEALSVQQNRKD----EGERMKRWAEAAWRNRRVSLAEA 414 (435)
Q Consensus 360 p~-~a~~l~nla~~~~a~G~yaeal~~~~~r~~----eae~~~~~a~~~~~~~r~~l~~~ 414 (435)
+. ....+.+++.++..+|+|++|+..+..-.. ..+.+...+..++..+++..|..
T Consensus 268 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 327 (359)
T 3ieg_A 268 AEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQ 327 (359)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHH
Confidence 33 334566799999999999999988744333 25777888999998888776654
No 28
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.81 E-value=9.4e-18 Score=158.74 Aligned_cols=270 Identities=13% Similarity=0.017 Sum_probs=192.8
Q ss_pred HHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 013867 60 PVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKN 139 (435)
Q Consensus 60 ~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e 139 (435)
..+..+...|..+.. .|+|++|+.+|++++... |.....+..+|.+|..+|+|++|++.|++++.+..
T Consensus 19 ~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 86 (327)
T 3cv0_A 19 MYHENPMEEGLSMLK----LANLAEAALAFEAVCQAA--------PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP 86 (327)
T ss_dssp GGSSCHHHHHHHHHH----TTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred hhhHHHHHHHHHHHH----hccHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc
Confidence 344556777877743 579999999999999753 45677888999999999999999999999987754
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCch----------------hc--hhhHHHHHHHHHHHH
Q 013867 140 SILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENY----------------KT--YGAVNSRANAVKGLV 201 (435)
Q Consensus 140 ~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~----------------~e--aeal~~~a~Ai~~~~ 201 (435)
.. ..++..++..+..+|.+..|......++........... .. .........|+....
T Consensus 87 ~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 162 (327)
T 3cv0_A 87 KD----IAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLH 162 (327)
T ss_dssp TC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHH
T ss_pred CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHH
Confidence 43 234556777788889888887777666543211110000 00 011112222222222
Q ss_pred HHhcCCCcccccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHH
Q 013867 202 ELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALG 281 (435)
Q Consensus 202 ~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa 281 (435)
+.+.- .|....+...+|.+|..+|+|++|+.+|++++++. + . ...++.++|
T Consensus 163 ~~~~~---------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------~-~-----------~~~~~~~l~ 213 (327)
T 3cv0_A 163 AALEM---------NPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR--------P-D-----------DAQLWNKLG 213 (327)
T ss_dssp HHHHH---------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------T-T-----------CHHHHHHHH
T ss_pred HHHhh---------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--------C-C-----------cHHHHHHHH
Confidence 21111 13345677888999999999999999999999881 0 1 113578999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCC-CCCCC
Q 013867 282 QLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAP-PLESE 360 (435)
Q Consensus 282 ~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~-~~~hp 360 (435)
.+|..+|+|++|..+|++++.+ +|+...++.++|.+|..+|++++| ...|++++++.... ++.+.
T Consensus 214 ~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~g~~~~A------~~~~~~a~~~~~~~~~~~~~ 279 (327)
T 3cv0_A 214 ATLANGNRPQEALDAYNRALDI--------NPGYVRVMYNMAVSYSNMSQYDLA------AKQLVRAIYMQVGGTTPTGE 279 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHHTTSCC----
T ss_pred HHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhccHHHH------HHHHHHHHHhCCcccccccc
Confidence 9999999999999999999986 355566899999999999998776 89999999998432 22221
Q ss_pred c----hhhhhccHHHHHHHhcCHHHHhhHhhh
Q 013867 361 G----VETKVDRTDIVALARGGYAEALSVQQN 388 (435)
Q Consensus 361 ~----~a~~l~nla~~~~a~G~yaeal~~~~~ 388 (435)
. ......+++.++..+|++++|......
T Consensus 280 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 280 ASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp -CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred chhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 1 456778899999999999999887743
No 29
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.80 E-value=2.6e-18 Score=158.99 Aligned_cols=205 Identities=13% Similarity=0.030 Sum_probs=141.3
Q ss_pred HHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhH
Q 013867 63 LQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSIL 142 (435)
Q Consensus 63 ~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L 142 (435)
....++|..+.+ .|+|++|+..|++++++. |.-...+.++|.+|..+|+|++|+..|++++.+.
T Consensus 6 ~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~--------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~---- 69 (217)
T 2pl2_A 6 QNPLRLGVQLYA----LGRYDAALTLFERALKEN--------PQDPEALYWLARTQLKLGLVNPALENGKTLVART---- 69 (217)
T ss_dssp HHHHHHHHHHHH----TTCHHHHHHHHHHHHTTS--------SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----
Confidence 456677877743 689999999999999554 5667889999999999999999999999986543
Q ss_pred HHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHH
Q 013867 143 GVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSA 222 (435)
Q Consensus 143 ~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~ 222 (435)
|+.. .. ......++... ....+ .
T Consensus 70 ------------------P~~~-~a-~~~lg~~~~~~----------------------~~~~~----------~----- 92 (217)
T 2pl2_A 70 ------------------PRYL-GG-YMVLSEAYVAL----------------------YRQAE----------D----- 92 (217)
T ss_dssp ------------------TTCH-HH-HHHHHHHHHHH----------------------HHTCS----------S-----
T ss_pred ------------------CCcH-HH-HHHHHHHHHHh----------------------hhhhh----------h-----
Confidence 2211 00 00111111000 00000 0
Q ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013867 223 ALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLT 302 (435)
Q Consensus 223 a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~ 302 (435)
.+...|+|++|+..|++++++ . |+ ...++.++|.+|..+|+|++|+..|++|++
T Consensus 93 ------~~~~~g~~~~A~~~~~~al~~-----------~-------P~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 146 (217)
T 2pl2_A 93 ------RERGKGYLEQALSVLKDAERV-----------N-------PR--YAPLHLQRGLVYALLGERDKAEASLKQALA 146 (217)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHH-----------C-------TT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------hcccccCHHHHHHHHHHHHHh-----------C-------cc--cHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Confidence 123469999999999999998 1 11 124678999999999999999999999999
Q ss_pred HHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHHH
Q 013867 303 KTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEA 382 (435)
Q Consensus 303 I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yaea 382 (435)
+. ++ ...+.+||.+|..+|++++| +..|++++++. |+......+++.++..+|+|++|
T Consensus 147 ~~------~~---~~~~~~la~~~~~~g~~~~A------~~~~~~al~~~-------P~~~~~~~~la~~~~~~g~~~~A 204 (217)
T 2pl2_A 147 LE------DT---PEIRSALAELYLSMGRLDEA------LAQYAKALEQA-------PKDLDLRVRYASALLLKGKAEEA 204 (217)
T ss_dssp HC------CC---HHHHHHHHHHHHHHTCHHHH------HHHHHHHHHHS-------TTCHHHHHHHHHHHTC-------
T ss_pred cc------cc---hHHHHHHHHHHHHcCCHHHH------HHHHHHHHHhC-------CCChHHHHHHHHHHHHccCHHHH
Confidence 84 34 45678999999999998876 89999999974 44445677899999999999999
Q ss_pred hhHhhh
Q 013867 383 LSVQQN 388 (435)
Q Consensus 383 l~~~~~ 388 (435)
+..+.+
T Consensus 205 ~~~~~~ 210 (217)
T 2pl2_A 205 ARAAAL 210 (217)
T ss_dssp ------
T ss_pred HHHHHH
Confidence 887644
No 30
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.80 E-value=6.5e-19 Score=171.91 Aligned_cols=250 Identities=12% Similarity=0.072 Sum_probs=165.7
Q ss_pred HHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhh
Q 013867 61 VVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNS 140 (435)
Q Consensus 61 vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~ 140 (435)
.+..+.++|..+.+ .|+|++|+.+|++++.+. |....++.+||.+|..+|+|++|++.|++++.+.+.
T Consensus 98 ~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 165 (365)
T 4eqf_A 98 DAEAWQFLGITQAE----NENEQAAIVALQRCLELQ--------PNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPK 165 (365)
T ss_dssp CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHH
T ss_pred CHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCcc
Confidence 35567788888853 689999999999999874 556788999999999999999999999999887654
Q ss_pred hHHHH------HHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccc
Q 013867 141 ILGVR------VAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQE 214 (435)
Q Consensus 141 ~L~i~------vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~ 214 (435)
..... ......++..+..+|.+..|....+.++.+... ..+...+.... .+....|+++.|...
T Consensus 166 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~~~l~-----~~~~~~g~~~~A~~~ 235 (365)
T 4eqf_A 166 YKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGD-----MIDPDLQTGLG-----VLFHLSGEFNRAIDA 235 (365)
T ss_dssp HHCC-------------------CCHHHHHHHHHHHHHHHHSCS-----SCCHHHHHHHH-----HHHHHHTCHHHHHHH
T ss_pred chHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcC-----ccCHHHHHHHH-----HHHHHCCCHHHHHHH
Confidence 32211 111223344455555555555544444333110 00111111111 111112333322211
Q ss_pred c------ccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcC
Q 013867 215 E------EGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMG 288 (435)
Q Consensus 215 ~------~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG 288 (435)
+ .|....+..++|.+|..+|+|++|+.+|++++++. |. ...++.+||.+|..+|
T Consensus 236 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---------p~-----------~~~~~~~l~~~~~~~g 295 (365)
T 4eqf_A 236 FNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ---------PG-----------FIRSRYNLGISCINLG 295 (365)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------TT-----------CHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---------CC-----------chHHHHHHHHHHHHCC
Confidence 1 24456778889999999999999999999999981 11 1246789999999999
Q ss_pred CHHHHHHHHHHHHHHHHHhhCCCChhH----HHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhc-CCCCC
Q 013867 289 NFGDAEEILTRTLTKTEELFGSHHPKV----GVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLK-APPLE 358 (435)
Q Consensus 289 ~y~eAe~l~~rAL~I~e~~lG~~HP~v----a~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k-~~~~~ 358 (435)
+|++|..+|++++.+..+..|+.||.. +..+.+|+.+|..+|+.+.+ +...++++++++ .++++
T Consensus 296 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a------~~~~~~~l~~~~~~~~~~ 364 (365)
T 4eqf_A 296 AYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELF------QAANLGDLDVLLRAFNLD 364 (365)
T ss_dssp CCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHH------HHHHTTCCGGGTTTTTCC
T ss_pred CHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHH------HHHHHhhHHHHHHhcCCC
Confidence 999999999999999999999988876 78899999999999998766 888999999984 55654
No 31
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.80 E-value=1.8e-17 Score=161.17 Aligned_cols=265 Identities=10% Similarity=0.013 Sum_probs=179.7
Q ss_pred ChhcHHHHHHHHHHHHhccCc-CC--CCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHH--HHHHHHHH
Q 013867 78 SDESYSQGMLVLEQCLSTQPS-DG--QLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGV--RVAAMEAL 152 (435)
Q Consensus 78 s~G~Y~eA~~~~eqaL~i~~~-~l--G~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i--~vaale~L 152 (435)
+.|+|++|+.+++++.+.... .+ +++....+..+...+.+|..+|+|++|++.|++++.+..+.-.. ...++.++
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~l 82 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQA 82 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 468999999999999886654 23 47777788889999999999999999999999998876543111 12234455
Q ss_pred HHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHH
Q 013867 153 AGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHA 232 (435)
Q Consensus 153 ~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~ 232 (435)
+.+|..+|.+..|...++.++.+... .|+. .....+..++|.+|..
T Consensus 83 g~~~~~~g~~~~A~~~~~~Al~l~~~--------------------------~g~~--------~~~a~~~~~lg~~~~~ 128 (307)
T 2ifu_A 83 GMMLKDLQRMPEAVQYIEKASVMYVE--------------------------NGTP--------DTAAMALDRAGKLMEP 128 (307)
T ss_dssp HHHHHHTTCGGGGHHHHHHHHHHHHT--------------------------TTCH--------HHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHH--------------------------cCCH--------HHHHHHHHHHHHHHHc
Confidence 55555555444444333333333221 1111 1123456678888988
Q ss_pred hhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCC
Q 013867 233 TRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHH 312 (435)
Q Consensus 233 ~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~H 312 (435)
|+|++|+.+|++|+++.... + . . .....+++++|.+|..+|+|++|..+|++++.+..+.- .+
T Consensus 129 -g~~~~A~~~~~~Al~~~~~~-~---~-~---------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~--~~ 191 (307)
T 2ifu_A 129 -LDLSKAVHLYQQAAAVFENE-E---R-L---------RQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEME--NY 191 (307)
T ss_dssp -TCHHHHHHHHHHHHHHHHHT-T---C-H---------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CH
T ss_pred -CCHHHHHHHHHHHHHHHHhC-C---C-h---------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC--Ch
Confidence 99999999999999996431 1 1 0 11235788999999999999999999999999988753 36
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHHHhhHhhhhhhH
Q 013867 313 PKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQQNRKDE 392 (435)
Q Consensus 313 P~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~~~r~~e 392 (435)
+.++..+.+++.+|..+|++++| ...|++++ +... .........+.++...+ ..|+.++...+. +...
T Consensus 192 ~~~~~~~~~~g~~~~~~g~~~~A------~~~~~~al-~~p~--~~~~~e~~~l~~l~~~~-~~~d~~~~~~~~--~~~~ 259 (307)
T 2ifu_A 192 PTCYKKCIAQVLVQLHRADYVAA------QKCVRESY-SIPG--FSGSEDCAALEDLLQAY-DEQDEEQLLRVC--RSPL 259 (307)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHH------HHHHHHHT-TSTT--STTSHHHHHHHHHHHHH-HTTCHHHHHHHT--TSHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHH------HHHHHHHh-CCCC--CCCCHHHHHHHHHHHHH-HhcCHHHHHHHH--hCch
Confidence 77888999999999999998776 89999999 5421 11222333455555554 456766555522 1333
Q ss_pred HHHHHHHHHHHhc
Q 013867 393 GERMKRWAEAAWR 405 (435)
Q Consensus 393 ae~~~~~a~~~~~ 405 (435)
..++-.|-..+.+
T Consensus 260 ~~~ld~~~~~~~~ 272 (307)
T 2ifu_A 260 VTYMDNDYAKLAI 272 (307)
T ss_dssp HHTSCHHHHHHHH
T ss_pred hhhhhHHHHHHHH
Confidence 4444444444443
No 32
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.80 E-value=3.1e-18 Score=165.87 Aligned_cols=280 Identities=14% Similarity=0.098 Sum_probs=186.8
Q ss_pred hhcHHHHHH-HHHHHHhccCcCCCCCcch-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 013867 79 DESYSQGML-VLEQCLSTQPSDGQLAESW-RGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLY 156 (435)
Q Consensus 79 ~G~Y~eA~~-~~eqaL~i~~~~lG~~Hp~-~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~ 156 (435)
.|+|++|+. .|++++.+.. ++|. .+..+.++|..|..+|+|++|+..|++++.+.+.. ..++..++..+
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~-----~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~ 108 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEE-----ENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKH----MEAWQYLGTTQ 108 (368)
T ss_dssp --------CHHHHCCCCCCS-----SCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC----HHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhHHHhcCC-----CCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHH
Confidence 578999999 9999996643 3333 35678899999999999999999999998765543 23456677778
Q ss_pred HhcCCCcchHHHHHHHHHHH--------------HhcCCCchhchhhHHHHHHHHHHHHHHhcCCCccccccc-----cc
Q 013867 157 LQLGQDDTSSVVADKCLQLC--------------EKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEE-----EG 217 (435)
Q Consensus 157 ~~~g~~~~A~~~~~~~~~l~--------------~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~-----~~ 217 (435)
..+|.+..|......++.+. ...+ .+++| +....+++. ..++.+...... ..
T Consensus 109 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g--~~~~A--~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 179 (368)
T 1fch_A 109 AENEQELLAISALRRCLELKPDNQTALMALAVSFTNES--LQRQA--CEILRDWLR-----YTPAYAHLVTPAEEGAGGA 179 (368)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHH--HHHHHHHHH-----TSTTTGGGCC---------
T ss_pred HHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC--CHHHH--HHHHHHHHH-----hCcCcHHHHHHHHHHhhhh
Confidence 88888877777666655431 1111 11111 111111111 111111100000 00
Q ss_pred chhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 013867 218 CTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEIL 297 (435)
Q Consensus 218 ~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~ 297 (435)
........++.++ .+|+|++|+.+|++++++. . ... ....++++|.+|..+|+|++|..+|
T Consensus 180 ~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~---p------~~~---------~~~~~~~l~~~~~~~g~~~~A~~~~ 240 (368)
T 1fch_A 180 GLGPSKRILGSLL-SDSLFLEVKELFLAAVRLD---P------TSI---------DPDVQCGLGVLFNLSGEYDKAVDCF 240 (368)
T ss_dssp ------CTTHHHH-HHHHHHHHHHHHHHHHHHS---T------TSC---------CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cccHHHHHHHHHh-hcccHHHHHHHHHHHHHhC---c------Ccc---------cHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 0000111345555 8999999999999999881 1 100 1246789999999999999999999
Q ss_pred HHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhc
Q 013867 298 TRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARG 377 (435)
Q Consensus 298 ~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G 377 (435)
++++.+ +|+...+++++|.+|..+|++++| +..|++++++. |+......+++.++..+|
T Consensus 241 ~~al~~--------~~~~~~~~~~l~~~~~~~g~~~~A------~~~~~~al~~~-------~~~~~~~~~l~~~~~~~g 299 (368)
T 1fch_A 241 TAALSV--------RPNDYLLWNKLGATLANGNQSEEA------VAAYRRALELQ-------PGYIRSRYNLGISCINLG 299 (368)
T ss_dssp HHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHC-------TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHh--------CcCCHHHHHHHHHHHHHcCCHHHH------HHHHHHHHHhC-------CCcHHHHHHHHHHHHHCC
Confidence 999987 566678999999999999998776 89999999984 444567789999999999
Q ss_pred CHHHHhhHhhhhhhH---------------HHHHHHHHHHHhcccchhHHHHhc
Q 013867 378 GYAEALSVQQNRKDE---------------GERMKRWAEAAWRNRRVSLAEALN 416 (435)
Q Consensus 378 ~yaeal~~~~~r~~e---------------ae~~~~~a~~~~~~~r~~l~~~l~ 416 (435)
+|++|+..+.+-... .+.|...+..+...+++..++++.
T Consensus 300 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 353 (368)
T 1fch_A 300 AHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAAD 353 (368)
T ss_dssp CHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhH
Confidence 999998866332211 466778888888999988888775
No 33
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.79 E-value=2.7e-17 Score=170.26 Aligned_cols=272 Identities=11% Similarity=0.060 Sum_probs=196.7
Q ss_pred cCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 013867 76 QKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGL 155 (435)
Q Consensus 76 ~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~ 155 (435)
+...|++++|+.+|++++.. |....+++.++.+|..+|+|++|+++|++++...... +.++..++..
T Consensus 282 ~~~~g~~~~A~~~~~~~~~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~ 348 (597)
T 2xpi_A 282 TSHEDELRRAEDYLSSINGL---------EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYN----LDVYPLHLAS 348 (597)
T ss_dssp TTTHHHHHHHHHHHHTSTTG---------GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----CTTHHHHHHH
T ss_pred HcCcchHHHHHHHHHHhhcC---------CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCccc----HHHHHHHHHH
Confidence 34679999999999998855 3457788999999999999999999999997654332 1223444555
Q ss_pred HHhcCCCcchHHHHHHHH--------------HHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhH
Q 013867 156 YLQLGQDDTSSVVADKCL--------------QLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGS 221 (435)
Q Consensus 156 ~~~~g~~~~A~~~~~~~~--------------~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~ 221 (435)
+...|....|..+.+.+. .++...+. +++|... +.+++. . .|....
T Consensus 349 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~--~~~~~~-----~-----------~~~~~~ 408 (597)
T 2xpi_A 349 LHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNK--ISEARRY--FSKSST-----M-----------DPQFGP 408 (597)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTC--HHHHHHH--HHHHHH-----H-----------CTTCHH
T ss_pred HHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhcc--HHHHHHH--HHHHHH-----h-----------CCCCHH
Confidence 556666665555444332 22222221 3222222 121111 0 133455
Q ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013867 222 AALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTL 301 (435)
Q Consensus 222 ~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL 301 (435)
+...++.+|..+|++++|+.+|++++++. +.. ..++++||.+|..+|++++|+.+|++++
T Consensus 409 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 468 (597)
T 2xpi_A 409 AWIGFAHSFAIEGEHDQAISAYTTAARLF--------QGT------------HLPYLFLGMQHMQLGNILLANEYLQSSY 468 (597)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTT--------TTC------------SHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------ccc------------hHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 67788999999999999999999999771 101 1357889999999999999999999999
Q ss_pred HHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCc-hhhhhccHHHHHHHhcCHH
Q 013867 302 TKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEG-VETKVDRTDIVALARGGYA 380 (435)
Q Consensus 302 ~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~-~a~~l~nla~~~~a~G~ya 380 (435)
.+ .+++ ..+++++|.+|..+|++++| +.+|++++++....+. .|+ ....+.+++.++..+|+|+
T Consensus 469 ~~-----~~~~---~~~~~~l~~~~~~~g~~~~A------~~~~~~~~~~~~~~~~-~p~~~~~~~~~l~~~~~~~g~~~ 533 (597)
T 2xpi_A 469 AL-----FQYD---PLLLNELGVVAFNKSDMQTA------INHFQNALLLVKKTQS-NEKPWAATWANLGHAYRKLKMYD 533 (597)
T ss_dssp HH-----CCCC---HHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHHHHSCC-CSGGGHHHHHHHHHHHHHTTCHH
T ss_pred Hh-----CCCC---hHHHHHHHHHHHHhCCHHHH------HHHHHHHHHhhhcccc-chhhHHHHHHHHHHHHHHhcCHH
Confidence 76 3444 46799999999999998776 8999999999854333 344 4678889999999999999
Q ss_pred HHhhHhhhhhh----HHHHHHHHHHHHhcccchhHHHHh
Q 013867 381 EALSVQQNRKD----EGERMKRWAEAAWRNRRVSLAEAL 415 (435)
Q Consensus 381 eal~~~~~r~~----eae~~~~~a~~~~~~~r~~l~~~l 415 (435)
+|+..+.+-.. ..+.+...+..+++.+++..|...
T Consensus 534 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 572 (597)
T 2xpi_A 534 AAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITH 572 (597)
T ss_dssp HHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHH
Confidence 99998744322 257777889999999988776543
No 34
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.79 E-value=5.7e-18 Score=160.44 Aligned_cols=278 Identities=13% Similarity=0.095 Sum_probs=193.4
Q ss_pred HHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHH
Q 013867 65 MINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGV 144 (435)
Q Consensus 65 m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i 144 (435)
+..+|..+. ..|+|++|+.+|++++... |.....+..++.++..+|++++|+..+++++...+...
T Consensus 25 ~~~~a~~~~----~~g~~~~A~~~~~~~l~~~--------p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-- 90 (330)
T 3hym_B 25 VVSLAERHY----YNCDFKMCYKLTSVVMEKD--------PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNP-- 90 (330)
T ss_dssp HHHHHHHHH----HTTCHHHHHHHHHHHHHHC--------TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST--
T ss_pred HHHHHHHHH----HcCCHHHHHHHHHHHHHcC--------CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCH--
Confidence 344555552 2479999999999999654 33445677788899999999999999999988665432
Q ss_pred HHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCccccccc------cc
Q 013867 145 RVAAMEALAGLYLQLG-QDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEE------EG 217 (435)
Q Consensus 145 ~vaale~L~g~~~~~g-~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~------~~ 217 (435)
.++..++..+..+| .+..|....+.++.+. +. ....+...+.. ....|+++.|...+ .|
T Consensus 91 --~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~----~~---~~~~~~~l~~~-----~~~~~~~~~A~~~~~~a~~~~~ 156 (330)
T 3hym_B 91 --VSWFAVGCYYLMVGHKNEHARRYLSKATTLE----KT---YGPAWIAYGHS-----FAVESEHDQAMAAYFTAAQLMK 156 (330)
T ss_dssp --HHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC----TT---CTHHHHHHHHH-----HHHHTCHHHHHHHHHHHHHHTT
T ss_pred --HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC----Cc---cHHHHHHHHHH-----HHHccCHHHHHHHHHHHHHhcc
Confidence 23455666777778 6666766655544321 10 11111111111 11122322222111 13
Q ss_pred chhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 013867 218 CTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEIL 297 (435)
Q Consensus 218 ~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~ 297 (435)
....+...+|.+|..+|+|++|+.+|++++++. + . ....++++|.+|..+|+|++|+.+|
T Consensus 157 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--------~-~-----------~~~~~~~l~~~~~~~~~~~~A~~~~ 216 (330)
T 3hym_B 157 GCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA--------P-E-----------DPFVMHEVGVVAFQNGEWKTAEKWF 216 (330)
T ss_dssp TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--------T-T-----------CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--------C-C-----------ChHHHHHHHHHHHHcccHHHHHHHH
Confidence 334566678999999999999999999999871 1 1 1145789999999999999999999
Q ss_pred HHHHHHHHHhhCCCC-hhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHh
Q 013867 298 TRTLTKTEELFGSHH-PKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALAR 376 (435)
Q Consensus 298 ~rAL~I~e~~lG~~H-P~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~ 376 (435)
++++.+..+.-++.. |....++.++|.+|..+|++++| +..|++++++. |+....+.+++.++..+
T Consensus 217 ~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A------~~~~~~a~~~~-------~~~~~~~~~la~~~~~~ 283 (330)
T 3hym_B 217 LDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA------LDYHRQALVLI-------PQNASTYSAIGYIHSLM 283 (330)
T ss_dssp HHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHS-------TTCSHHHHHHHHHHHHH
T ss_pred HHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH------HHHHHHHHhhC-------ccchHHHHHHHHHHHHh
Confidence 999999887766655 66788999999999999998776 89999999985 33345677899999999
Q ss_pred cCHHHHhhHhhhhhhH----HHHHHHHHHHH
Q 013867 377 GGYAEALSVQQNRKDE----GERMKRWAEAA 403 (435)
Q Consensus 377 G~yaeal~~~~~r~~e----ae~~~~~a~~~ 403 (435)
|+|++|+..+.+-... .+.+...+..+
T Consensus 284 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 284 GNFENAVDYFHTALGLRRDDTFSVTMLGHCI 314 (330)
T ss_dssp TCHHHHHHHHHTTTTTCSCCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHccCCCchHHHHHHHHHH
Confidence 9999999887443222 44555555554
No 35
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.79 E-value=8.2e-17 Score=160.46 Aligned_cols=279 Identities=11% Similarity=0.040 Sum_probs=191.0
Q ss_pred HHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 013867 60 PVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKN 139 (435)
Q Consensus 60 ~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e 139 (435)
..+..+.++|..+.. .|+|++|+.+|++++.+. |....++.++|.+|..+|+|++|+..|++++.+..
T Consensus 58 ~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 125 (450)
T 2y4t_A 58 DNYIAYYRRATVFLA----MGKSKAALPDLTKVIQLK--------MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP 125 (450)
T ss_dssp TCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCC
T ss_pred ccHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcC--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 335566777777743 689999999999999764 45578899999999999999999999999987665
Q ss_pred hhH---HHHH--------HHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCC
Q 013867 140 SIL---GVRV--------AAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNL 208 (435)
Q Consensus 140 ~~L---~i~v--------aale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h 208 (435)
... .... ...-.++..+...|.+..|....+.++.+. +. +...+... +.+....|++
T Consensus 126 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----~~---~~~~~~~l-----~~~~~~~g~~ 193 (450)
T 2y4t_A 126 SENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC----VW---DAELRELR-----AECFIKEGEP 193 (450)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----TT---CHHHHHHH-----HHHHHHTTCG
T ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CC---ChHHHHHH-----HHHHHHCCCH
Confidence 332 1100 012233455677787777766665544321 10 11111111 1112233454
Q ss_pred ccccccc------ccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHH
Q 013867 209 ESGLQEE------EGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQ 282 (435)
Q Consensus 209 ~~a~~~~------~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ 282 (435)
+.|...+ .|....+...+|.+|..+|++++|+.+|++++.+. . ++ ....... ..-.......++|.
T Consensus 194 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---p---~~-~~~~~~~-~~~~~~~~~~~~~~ 265 (450)
T 2y4t_A 194 RKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD---Q---DH-KRCFAHY-KQVKKLNKLIESAE 265 (450)
T ss_dssp GGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---T---TC-HHHHHHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---C---Ch-HHHHHHH-HHHHHHHHHHHHHH
Confidence 4443222 24455677889999999999999999999999871 1 11 0000000 00000011245599
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhH-HHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCc
Q 013867 283 LEAHMGNFGDAEEILTRTLTKTEELFGSHHPKV-GVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEG 361 (435)
Q Consensus 283 ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~v-a~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~ 361 (435)
+|..+|+|++|..+|++++.+ .|++|.. ...+.++|.+|..+|++++| +.+|++++++. |+
T Consensus 266 ~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~~~~~~~~l~~~~~~~g~~~~A------~~~~~~a~~~~-------p~ 327 (450)
T 2y4t_A 266 ELIRDGRYTDATSKYESVMKT-----EPSIAEYTVRSKERICHCFSKDEKPVEA------IRVCSEVLQME-------PD 327 (450)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH-----CCSSHHHHHHHHHHHHHHHHTTTCHHHH------HHHHHHHHHHC-------TT
T ss_pred HHHHcCCHHHHHHHHHHHHhc-----CCcchHHHHHHHHHHHHHHHHCCCHHHH------HHHHHHHHHhC-------cc
Confidence 999999999999999999985 4667765 67899999999999998776 89999999883 44
Q ss_pred hhhhhccHHHHHHHhcCHHHHhhHhhh
Q 013867 362 VETKVDRTDIVALARGGYAEALSVQQN 388 (435)
Q Consensus 362 ~a~~l~nla~~~~a~G~yaeal~~~~~ 388 (435)
....+.+++.++..+|+|++|+..+++
T Consensus 328 ~~~~~~~l~~~~~~~~~~~~A~~~~~~ 354 (450)
T 2y4t_A 328 NVNALKDRAEAYLIEEMYDEAIQDYET 354 (450)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 456788899999999999999887643
No 36
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.79 E-value=4.5e-17 Score=154.27 Aligned_cols=258 Identities=16% Similarity=0.087 Sum_probs=182.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhch
Q 013867 108 GISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTY 187 (435)
Q Consensus 108 A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~ea 187 (435)
...+..+|..+..+|+|++|++.|++++........ ++..++..+..+|.+..|..+...++... +. ..
T Consensus 22 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~----~~~~~~~~~~~~~~~~~A~~~~~~~~~~~----~~---~~ 90 (330)
T 3hym_B 22 LDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHAS----CLPVHIGTLVELNKANELFYLSHKLVDLY----PS---NP 90 (330)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT----THHHHHHHHHHHTCHHHHHHHHHHHHHHC----TT---ST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChh----hHHHHHHHHHHhhhHHHHHHHHHHHHHhC----cC---CH
Confidence 345778999999999999999999999876554322 22334455666777777666655544321 10 11
Q ss_pred hhHHHHHHHHHHHHHHhcC-CCccccccc------ccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCC
Q 013867 188 GAVNSRANAVKGLVELAHG-NLESGLQEE------EGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMN 260 (435)
Q Consensus 188 eal~~~a~Ai~~~~~~lgg-~h~~a~~~~------~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~ 260 (435)
..+..... +....| +++.|...+ .|....+...+|.+|..+|+|++|+.+|++++++. ..
T Consensus 91 ~~~~~l~~-----~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---~~----- 157 (330)
T 3hym_B 91 VSWFAVGC-----YYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM---KG----- 157 (330)
T ss_dssp HHHHHHHH-----HHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT---TT-----
T ss_pred HHHHHHHH-----HHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc---cc-----
Confidence 12211111 111122 333222111 24455677889999999999999999999999982 11
Q ss_pred CcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHH
Q 013867 261 TLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLI 340 (435)
Q Consensus 261 ~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~ 340 (435)
. ..+..++|.+|..+|+|++|+.+|++++.+ .|+...+++++|.+|..+|++++|
T Consensus 158 ~------------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~~~~~~A----- 212 (330)
T 3hym_B 158 C------------HLPMLYIGLEYGLTNNSKLAERFFSQALSI--------APEDPFVMHEVGVVAFQNGEWKTA----- 212 (330)
T ss_dssp C------------SHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------CTTCHHHHHHHHHHHHHTTCHHHH-----
T ss_pred c------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHcccHHHH-----
Confidence 1 024567999999999999999999999986 355668899999999999998776
Q ss_pred HHHHHHHHHHHhcCCCCC--CCchhhhhccHHHHHHHhcCHHHHhhHhhhhhhH----HHHHHHHHHHHhcccchhHHHH
Q 013867 341 QEGLYRRALEFLKAPPLE--SEGVETKVDRTDIVALARGGYAEALSVQQNRKDE----GERMKRWAEAAWRNRRVSLAEA 414 (435)
Q Consensus 341 Ae~Ly~rAL~I~k~~~~~--hp~~a~~l~nla~~~~a~G~yaeal~~~~~r~~e----ae~~~~~a~~~~~~~r~~l~~~ 414 (435)
+..|++++++.+..+.. .|.....+.+++.++..+|+|++|+..+.+-... .+.+...+..+.+.+++..|..
T Consensus 213 -~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 291 (330)
T 3hym_B 213 -EKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVD 291 (330)
T ss_dssp -HHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHH
T ss_pred -HHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHH
Confidence 89999999999654322 2445667889999999999999999877443322 4677788888888888776654
Q ss_pred h
Q 013867 415 L 415 (435)
Q Consensus 415 l 415 (435)
.
T Consensus 292 ~ 292 (330)
T 3hym_B 292 Y 292 (330)
T ss_dssp H
T ss_pred H
Confidence 4
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.78 E-value=1.1e-16 Score=146.10 Aligned_cols=234 Identities=12% Similarity=0.036 Sum_probs=177.2
Q ss_pred hHHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 013867 59 NPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFK 138 (435)
Q Consensus 59 ~~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~ 138 (435)
+..|..+.++|..+.. .|+|++|+.+|++++... . ....+.++|.+|..+|+|++|++.|++++.+.
T Consensus 2 ~~~a~~~~~~g~~~~~----~~~~~~A~~~~~~a~~~~-~--------~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 68 (258)
T 3uq3_A 2 GSMADKEKAEGNKFYK----ARQFDEAIEHYNKAWELH-K--------DITYLNNRAAAEYEKGEYETAISTLNDAVEQG 68 (258)
T ss_dssp HHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHS-C--------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHH----hccHHHHHHHHHHHHHhh-c--------cHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC
Confidence 4567888999999853 689999999999999875 1 14678999999999999999999999998876
Q ss_pred hhhH---HHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCccccccc
Q 013867 139 NSIL---GVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEE 215 (435)
Q Consensus 139 e~~L---~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~ 215 (435)
+..- .....++..++..+..+|.+..|....+.++.+... ......+.....++...-..+.-
T Consensus 69 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~~~~~~a~~~~~~~~~~--------- 134 (258)
T 3uq3_A 69 REMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT-----ADILTKLRNAEKELKKAEAEAYV--------- 134 (258)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred cccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch-----hHHHHHHhHHHHHHHHHHHHHHc---------
Confidence 5431 011345667888888999998888777776664211 11112222333333332222221
Q ss_pred ccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHH
Q 013867 216 EGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEE 295 (435)
Q Consensus 216 ~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~ 295 (435)
.|....+...+|.++..+|+|++|+.+|++++++. . . ....+.++|.+|..+|+|++|+.
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~---~------~-----------~~~~~~~l~~~~~~~~~~~~A~~ 194 (258)
T 3uq3_A 135 NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA---P------E-----------DARGYSNRAAALAKLMSFPEAIA 194 (258)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---T------T-----------CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC---c------c-----------cHHHHHHHHHHHHHhCCHHHHHH
Confidence 24455677889999999999999999999999881 1 1 11457899999999999999999
Q ss_pred HHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhc
Q 013867 296 ILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLK 353 (435)
Q Consensus 296 l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k 353 (435)
.|++++.+ .|+...++.++|.+|..+|++++| ...|++++++..
T Consensus 195 ~~~~al~~--------~~~~~~~~~~l~~~~~~~g~~~~A------~~~~~~a~~~~~ 238 (258)
T 3uq3_A 195 DCNKAIEK--------DPNFVRAYIRKATAQIAVKEYASA------LETLDAARTKDA 238 (258)
T ss_dssp HHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHHH
T ss_pred HHHHHHHh--------CHHHHHHHHHHHHHHHHHhhHHHH------HHHHHHHHHhCh
Confidence 99999986 355667899999999999998876 899999999984
No 38
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.78 E-value=1e-16 Score=158.98 Aligned_cols=246 Identities=13% Similarity=0.054 Sum_probs=179.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHH--HHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhch
Q 013867 110 SLLAMSTLLYESGNYVEAIEKLQKVENFKNSILG--VRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTY 187 (435)
Q Consensus 110 ~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~--i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~ea 187 (435)
.+..+|..+..+|+|++|++.|++++.+.+..-. ....++.+++..|..+|.+..|......++.+......
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~------ 176 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPL------ 176 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTT------
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCC------
Confidence 4567899999999999999999999887654321 12234556666666666665555444444443332110
Q ss_pred hhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccc
Q 013867 188 GAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNM 267 (435)
Q Consensus 188 eal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~ 267 (435)
..+....+..++|.+|..+|+|++|+++|++|+++.++...
T Consensus 177 ---------------------------~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~------------ 217 (378)
T 3q15_A 177 ---------------------------YSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQN------------ 217 (378)
T ss_dssp ---------------------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC------------
T ss_pred ---------------------------chhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCC------------
Confidence 00123456677899999999999999999999999643211
Q ss_pred cchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHH
Q 013867 268 ALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRR 347 (435)
Q Consensus 268 ~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~r 347 (435)
......+++|||.+|..+|+|++|+.+|++|+.+.++. .+|..+.++.+||.+|..+|++++| ..+|++
T Consensus 218 --~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A------~~~~~~ 286 (378)
T 3q15_A 218 --DRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREK---VPDLLPKVLFGLSWTLCKAGQTQKA------FQFIEE 286 (378)
T ss_dssp --HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHTTCHHHH------HHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh---CChhHHHHHHHHHHHHHHCCCHHHH------HHHHHH
Confidence 11234578999999999999999999999999999887 6788899999999999999998876 899999
Q ss_pred HHHHhcCCCCCCCchhhhhccHHHHHHHhcC---HHHHhhHhhhhh---hHHHHHHHHHHHHhcccchhHHH
Q 013867 348 ALEFLKAPPLESEGVETKVDRTDIVALARGG---YAEALSVQQNRK---DEGERMKRWAEAAWRNRRVSLAE 413 (435)
Q Consensus 348 AL~I~k~~~~~hp~~a~~l~nla~~~~a~G~---yaeal~~~~~r~---~eae~~~~~a~~~~~~~r~~l~~ 413 (435)
++++.+..+ .|.....+.+++.++...|+ +.+|+...+... ...+.....+..+...+.+..|.
T Consensus 287 al~~~~~~~--~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~ 356 (378)
T 3q15_A 287 GLDHITARS--HKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAA 356 (378)
T ss_dssp HHHHCCTTC--CSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHcC--CHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHCCCHHHHH
Confidence 999986542 34434467788889988888 888888764322 12344556777777777765543
No 39
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.78 E-value=1.1e-16 Score=152.72 Aligned_cols=277 Identities=11% Similarity=0.043 Sum_probs=189.2
Q ss_pred HHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh--
Q 013867 62 VLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKN-- 139 (435)
Q Consensus 62 A~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e-- 139 (435)
...+.++|..+. ..|+|++|+..|++++.+. |.....+..+|.+|..+|+|++|++.|++++.+.+
T Consensus 37 ~~~~~~~a~~~~----~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 104 (359)
T 3ieg_A 37 YIAYYRRATVFL----AMGKSKAALPDLTKVIALK--------MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSE 104 (359)
T ss_dssp HHHHHHHHHHHH----HHTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCH
T ss_pred HHHHHHHHHHHH----HccCHHHHHHHHHHHHHhC--------CCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcc
Confidence 346677787774 3689999999999999773 44558899999999999999999999999988766
Q ss_pred -hhHHHHH--------HHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcc
Q 013867 140 -SILGVRV--------AAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLES 210 (435)
Q Consensus 140 -~~L~i~v--------aale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~ 210 (435)
....... ...-.++..+...|.+..|....+.++... +. ....+...+. +....|+++.
T Consensus 105 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----~~---~~~~~~~~~~-----~~~~~~~~~~ 172 (359)
T 3ieg_A 105 QEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC----VW---DAELRELRAE-----CFIKEGEPRK 172 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TT---CHHHHHHHHH-----HHHHTTCHHH
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----CC---chHHHHHHHH-----HHHHCCCHHH
Confidence 3322210 011223566777888877776666554331 10 1111111111 1112233333
Q ss_pred cccc------cccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHH
Q 013867 211 GLQE------EEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLE 284 (435)
Q Consensus 211 a~~~------~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly 284 (435)
|... ..|....+...+|.+|..+|+|++|...|++++++. . +. ....... ..-..+....++|.++
T Consensus 173 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~---~---~~-~~~~~~~-~~~~~~~~~~~~a~~~ 244 (359)
T 3ieg_A 173 AISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD---Q---DH-KRCFAHY-KQVKKLNKLIESAEEL 244 (359)
T ss_dssp HHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---T---TC-HHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---c---cc-hHHHHHH-HHHHHHHHHHHHHHHH
Confidence 2211 135556788889999999999999999999999881 1 11 0000000 0000011234679999
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhhCCCChhH-HHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchh
Q 013867 285 AHMGNFGDAEEILTRTLTKTEELFGSHHPKV-GVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVE 363 (435)
Q Consensus 285 ~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~v-a~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a 363 (435)
..+|+|++|...|++++.+. |++|.+ ...+.++|.+|..+|++++| ...|++++++. |+..
T Consensus 245 ~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~~la~~~~~~~~~~~A------~~~~~~~~~~~-------~~~~ 306 (359)
T 3ieg_A 245 IRDGRYTDATSKYESVMKTE-----PSVAEYTVRSKERICHCFSKDEKPVEA------IRICSEVLQME-------PDNV 306 (359)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-----CSSHHHHHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHC-------TTCH
T ss_pred HHcCCHHHHHHHHHHHHhcC-----CCchHHHHHHHHHHHHHHHHccCHHHH------HHHHHHHHHhC-------cccH
Confidence 99999999999999999864 556554 45688999999999998776 89999999983 4445
Q ss_pred hhhccHHHHHHHhcCHHHHhhHhhh
Q 013867 364 TKVDRTDIVALARGGYAEALSVQQN 388 (435)
Q Consensus 364 ~~l~nla~~~~a~G~yaeal~~~~~ 388 (435)
..+.+++.++...|+|++|+..+..
T Consensus 307 ~~~~~~~~~~~~~g~~~~A~~~~~~ 331 (359)
T 3ieg_A 307 NALKDRAEAYLIEEMYDEAIQDYEA 331 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5778899999999999999887633
No 40
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.77 E-value=1.3e-16 Score=165.15 Aligned_cols=266 Identities=13% Similarity=0.029 Sum_probs=187.7
Q ss_pred hHHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 013867 59 NPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFK 138 (435)
Q Consensus 59 ~~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~ 138 (435)
|+.......++..+.+ .|+|++|+.+|++++.... + ...+++.++.+|...|++++|+++|++++...
T Consensus 302 ~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~-----~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 369 (597)
T 2xpi_A 302 EKSSDLLLCKADTLFV----RSRFIDVLAITTKILEIDP-----Y---NLDVYPLHLASLHESGEKNKLYLISNDLVDRH 369 (597)
T ss_dssp GGCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCT-----T---CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred CchHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHcCc-----c---cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC
Confidence 3445566677777753 5899999999999997642 2 23457788889999999999999998886543
Q ss_pred hhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCccccccc---
Q 013867 139 NSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEE--- 215 (435)
Q Consensus 139 e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~--- 215 (435)
... +.++..++..|...|..+.|..+.+.+..+. +. +...+..... .....|++++|...+
T Consensus 370 ~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~---~~~~~~~l~~-----~~~~~g~~~~A~~~~~~~ 433 (597)
T 2xpi_A 370 PEK----AVTWLAVGIYYLCVNKISEARRYFSKSSTMD----PQ---FGPAWIGFAH-----SFAIEGEHDQAISAYTTA 433 (597)
T ss_dssp TTS----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TT---CHHHHHHHHH-----HHHHHTCHHHHHHHHHHH
T ss_pred ccc----HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC----CC---CHHHHHHHHH-----HHHHcCCHHHHHHHHHHH
Confidence 322 3345566677778888777776666544321 10 0111111100 011112222222111
Q ss_pred ---ccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHH
Q 013867 216 ---EGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGD 292 (435)
Q Consensus 216 ---~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~e 292 (435)
.|....+...++.+|..+|++++|+.+|++++++. + . ...+++++|.+|..+|++++
T Consensus 434 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~-~-----------~~~~~~~l~~~~~~~g~~~~ 493 (597)
T 2xpi_A 434 ARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF--------Q-Y-----------DPLLLNELGVVAFNKSDMQT 493 (597)
T ss_dssp HHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------C-C-----------CHHHHHHHHHHHHHTTCHHH
T ss_pred HHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------C-C-----------ChHHHHHHHHHHHHhCCHHH
Confidence 13344567778999999999999999999999871 1 1 01457899999999999999
Q ss_pred HHHHHHHHHHHHHHhhCCCChh-HHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHH
Q 013867 293 AEEILTRTLTKTEELFGSHHPK-VGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDI 371 (435)
Q Consensus 293 Ae~l~~rAL~I~e~~lG~~HP~-va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~ 371 (435)
|+.+|++++.+..+. +.+|+ .+.+++++|.+|..+|++++| +..|++++++. |+......+++.
T Consensus 494 A~~~~~~~~~~~~~~--~~~p~~~~~~~~~l~~~~~~~g~~~~A------~~~~~~~~~~~-------p~~~~~~~~l~~ 558 (597)
T 2xpi_A 494 AINHFQNALLLVKKT--QSNEKPWAATWANLGHAYRKLKMYDAA------IDALNQGLLLS-------TNDANVHTAIAL 558 (597)
T ss_dssp HHHHHHHHHHHHHHS--CCCSGGGHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHS-------SCCHHHHHHHHH
T ss_pred HHHHHHHHHHhhhcc--ccchhhHHHHHHHHHHHHHHhcCHHHH------HHHHHHHHHhC-------CCChHHHHHHHH
Confidence 999999999997753 34566 589999999999999998876 89999999884 333456778999
Q ss_pred HHHHhcCHHHHhhHhh
Q 013867 372 VALARGGYAEALSVQQ 387 (435)
Q Consensus 372 ~~~a~G~yaeal~~~~ 387 (435)
+|..+|++++|...+.
T Consensus 559 ~~~~~g~~~~A~~~~~ 574 (597)
T 2xpi_A 559 VYLHKKIPGLAITHLH 574 (597)
T ss_dssp HHHHTTCHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHH
Confidence 9999999999888763
No 41
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.77 E-value=3.4e-16 Score=153.64 Aligned_cols=284 Identities=13% Similarity=0.040 Sum_probs=184.3
Q ss_pred HHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHH
Q 013867 65 MINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGV 144 (435)
Q Consensus 65 m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i 144 (435)
....|..+. .+|+|++|+.++++++..... .+....+.+++++|.+|..+|+|++|++.+++++.+.+..-..
T Consensus 17 ~~~~a~~~~----~~g~~~~A~~~~~~al~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 89 (373)
T 1hz4_A 17 NALRAQVAI----NDGNPDEAERLAKLALEELPP---GWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVW 89 (373)
T ss_dssp HHHHHHHHH----HTTCHHHHHHHHHHHHHTCCT---TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHH----HCCCHHHHHHHHHHHHHcCCC---CchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcH
Confidence 344454442 368999999999999987631 2234477789999999999999999999999998876543111
Q ss_pred --HHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHH
Q 013867 145 --RVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSA 222 (435)
Q Consensus 145 --~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~ 222 (435)
...++.+++..+..+|. +++|...+..+..+. ...++.. ++....+
T Consensus 90 ~~~~~~~~~la~~~~~~G~----------------------~~~A~~~~~~al~~~---~~~~~~~-------~~~~~~~ 137 (373)
T 1hz4_A 90 HYALWSLIQQSEILFAQGF----------------------LQTAWETQEKAFQLI---NEQHLEQ-------LPMHEFL 137 (373)
T ss_dssp HHHHHHHHHHHHHHHHTTC----------------------HHHHHHHHHHHHHHH---HHTTCTT-------STHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCC----------------------HHHHHHHHHHHHHHH---HHhcccc-------CcHHHHH
Confidence 11123333444444443 443333333332222 1222210 1223455
Q ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013867 223 ALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLT 302 (435)
Q Consensus 223 a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~ 302 (435)
..++|.+|..+|+|++|+.+|++++++.. . .+. +. ...++.+||.++..+|++++|+.+|++++.
T Consensus 138 ~~~la~~~~~~g~~~~A~~~~~~al~~~~---~------~~~----~~--~~~~~~~la~~~~~~g~~~~A~~~l~~a~~ 202 (373)
T 1hz4_A 138 VRIRAQLLWAWARLDEAEASARSGIEVLS---S------YQP----QQ--QLQCLAMLIQCSLARGDLDNARSQLNRLEN 202 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHTT---T------SCG----GG--GHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhh---c------cCc----HH--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66789999999999999999999999932 1 110 11 235678999999999999999999999999
Q ss_pred HHHHhhCCCChh-HHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHH
Q 013867 303 KTEELFGSHHPK-VGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAE 381 (435)
Q Consensus 303 I~e~~lG~~HP~-va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yae 381 (435)
+.... +. ++. .+.....++.+|..+|++++| +.++++++++. ++..+. ....+.+++.++..+|+|++
T Consensus 203 ~~~~~-~~-~~~~~~~~~~~~~~~~~~~g~~~~A------~~~~~~a~~~~--~~~~~~-~~~~~~~la~~~~~~g~~~~ 271 (373)
T 1hz4_A 203 LLGNG-KY-HSDWISNANKVRVIYWQMTGDKAAA------ANWLRHTAKPE--FANNHF-LQGQWRNIARAQILLGEFEP 271 (373)
T ss_dssp HHTTS-CC-CHHHHHHHHHHHHHHHHHTTCHHHH------HHHHHHSCCCC--CTTCGG-GHHHHHHHHHHHHHTTCHHH
T ss_pred HHhcc-Cc-chhHHHHHHHHHHHHHHHCCCHHHH------HHHHHhCCCCC--CCcchh-hHHHHHHHHHHHHHcCCHHH
Confidence 86542 21 222 222223566779999998776 78888887543 111121 12245678999999999999
Q ss_pred HhhHhhhhhhH----------HHHHHHHHHHHhcccchhHHH
Q 013867 382 ALSVQQNRKDE----------GERMKRWAEAAWRNRRVSLAE 413 (435)
Q Consensus 382 al~~~~~r~~e----------ae~~~~~a~~~~~~~r~~l~~ 413 (435)
|+.....-... .+.+...+..+|..++...+.
T Consensus 272 A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 313 (373)
T 1hz4_A 272 AEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQ 313 (373)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHH
Confidence 98866332222 234555778888777765544
No 42
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.77 E-value=1.4e-17 Score=182.93 Aligned_cols=171 Identities=13% Similarity=0.128 Sum_probs=132.7
Q ss_pred ChHHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 013867 58 SNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENF 137 (435)
Q Consensus 58 ~~~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i 137 (435)
+|+.+..+.++|..+. .+|+|++|+..|+++|++. |+-+..++|||.+|.++|+|++|++.|++++++
T Consensus 5 ~P~~a~al~nLG~~~~----~~G~~~eAi~~~~kAl~l~--------P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l 72 (723)
T 4gyw_A 5 CPTHADSLNNLANIKR----EQGNIEEAVRLYRKALEVF--------PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 72 (723)
T ss_dssp -CHHHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHC--------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5667777777777773 2577888888888887664 445677778888888888888887777776321
Q ss_pred hhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCccccccccc
Q 013867 138 KNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEG 217 (435)
Q Consensus 138 ~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~ 217 (435)
.|
T Consensus 73 ----------------------~P-------------------------------------------------------- 74 (723)
T 4gyw_A 73 ----------------------SP-------------------------------------------------------- 74 (723)
T ss_dssp ----------------------CT--------------------------------------------------------
T ss_pred ----------------------CC--------------------------------------------------------
Confidence 11
Q ss_pred chhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 013867 218 CTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEIL 297 (435)
Q Consensus 218 ~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~ 297 (435)
....+..++|.+|..+|+|++|+..|+|||++ . |. ...+++|||.+|..+|+|++|+..|
T Consensus 75 ~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l---~------P~-----------~~~a~~~Lg~~~~~~g~~~eAi~~~ 134 (723)
T 4gyw_A 75 TFADAYSNMGNTLKEMQDVQGALQCYTRAIQI---N------PA-----------FADAHSNLASIHKDSGNIPEAIASY 134 (723)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---C------TT-----------CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---C------CC-----------CHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 12234556788889999999999999999998 1 11 1246889999999999999999999
Q ss_pred HHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 298 TRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 298 ~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
++||++ .|+...++.|||.+|..+|++++| +..|++++++.
T Consensus 135 ~~Al~l--------~P~~~~a~~~L~~~l~~~g~~~~A------~~~~~kal~l~ 175 (723)
T 4gyw_A 135 RTALKL--------KPDFPDAYCNLAHCLQIVCDWTDY------DERMKKLVSIV 175 (723)
T ss_dssp HHHHHH--------CSCCHHHHHHHHHHHHHTTCCTTH------HHHHHHHHHHH
T ss_pred HHHHHh--------CCCChHHHhhhhhHHHhcccHHHH------HHHHHHHHHhC
Confidence 999987 466677899999999999998876 89999999987
No 43
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.77 E-value=9e-17 Score=163.53 Aligned_cols=296 Identities=13% Similarity=0.052 Sum_probs=194.5
Q ss_pred ChHHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 013867 58 SNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENF 137 (435)
Q Consensus 58 ~~~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i 137 (435)
.+..+..+.+.|..+.+ .|+|++|+.+|++++.+. |.....+.++|.+|..+|+|++|++.|++++.+
T Consensus 21 ~~~~a~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 88 (537)
T 3fp2_A 21 RQAYAVQLKNRGNHFFT----AKNFNEAIKYYQYAIELD--------PNEPVFYSNISACYISTGDLEKVIEFTTKALEI 88 (537)
T ss_dssp HHHHHHHHHHHHHHHHH----TTCCC-CHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH----hccHHHHHHHHHHHHhhC--------CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 35578888999999853 689999999999999765 455788999999999999999999999999887
Q ss_pred hhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHH------------------------HHhcCCC-----------
Q 013867 138 KNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQL------------------------CEKHKPE----------- 182 (435)
Q Consensus 138 ~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l------------------------~~~~~~~----------- 182 (435)
.+.. ..++..++.++..+|.+..|..... .+.+ +......
T Consensus 89 ~p~~----~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~ 163 (537)
T 3fp2_A 89 KPDH----SKALLRRASANESLGNFTDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPS 163 (537)
T ss_dssp CTTC----HHHHHHHHHHHHHHTCHHHHHHHHH-HHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCC
T ss_pred CCch----HHHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccch
Confidence 6543 2345566677778888777765442 1100 0000000
Q ss_pred -------------------------------------------chhc-hhhHHHHHHHHHHHHHHhcCCCcccccccccc
Q 013867 183 -------------------------------------------NYKT-YGAVNSRANAVKGLVELAHGNLESGLQEEEGC 218 (435)
Q Consensus 183 -------------------------------------------~~~e-aeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~ 218 (435)
..+. .++...+.+|+...-+.+.-+ |... .....
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~-~~~~~ 241 (537)
T 3fp2_A 164 NTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDD-PLREN 241 (537)
T ss_dssp HHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCH-HHHHH
T ss_pred HhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcc-hhhHH
Confidence 0000 011112233333222222111 1100 00111
Q ss_pred hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013867 219 TGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILT 298 (435)
Q Consensus 219 ~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~ 298 (435)
.+.+...+|.++..+|+|++|+.+|++++.+. |+ ..++.++|.+|..+|+|++|..+|+
T Consensus 242 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~------------------~~---~~~~~~l~~~~~~~~~~~~A~~~~~ 300 (537)
T 3fp2_A 242 AALALCYTGIFHFLKNNLLDAQVLLQESINLH------------------PT---PNSYIFLALTLADKENSQEFFKFFQ 300 (537)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------CC---HHHHHHHHHHTCCSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC------------------CC---chHHHHHHHHHHHhcCHHHHHHHHH
Confidence 23455667788889999999999999999871 11 1356788889999999999999999
Q ss_pred HHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcC
Q 013867 299 RTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGG 378 (435)
Q Consensus 299 rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~ 378 (435)
+++.+ +|+...++.++|.+|..+|++++| +..|++++++. |+++ ....+++.++..+|+
T Consensus 301 ~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A------~~~~~~a~~~~----~~~~---~~~~~la~~~~~~g~ 359 (537)
T 3fp2_A 301 KAVDL--------NPEYPPTYYHRGQMYFILQDYKNA------KEDFQKAQSLN----PENV---YPYIQLACLLYKQGK 359 (537)
T ss_dssp HHHHH--------CTTCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHC----TTCS---HHHHHHHHHHHHTTC
T ss_pred HHhcc--------CCCCHHHHHHHHHHHHhcCCHHHH------HHHHHHHHHhC----CCCH---HHHHHHHHHHHHcCC
Confidence 98875 344556688899999999987766 78888888864 2222 456678888888899
Q ss_pred HHHHhhHhhhhhhH----HHHHHHHHHHHhcccchhHHHH
Q 013867 379 YAEALSVQQNRKDE----GERMKRWAEAAWRNRRVSLAEA 414 (435)
Q Consensus 379 yaeal~~~~~r~~e----ae~~~~~a~~~~~~~r~~l~~~ 414 (435)
|++|+.....-... .+.+...+..+...+++..|..
T Consensus 360 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 399 (537)
T 3fp2_A 360 FTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIK 399 (537)
T ss_dssp HHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHH
Confidence 98888776332222 3556667777777777665543
No 44
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.76 E-value=7e-16 Score=156.93 Aligned_cols=161 Identities=14% Similarity=0.097 Sum_probs=117.9
Q ss_pred cchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 013867 217 GCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEI 296 (435)
Q Consensus 217 ~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l 296 (435)
|....+...+|.+|..+|+|++|+.+|++++.+. . ... .++.++|.+|..+|+|++|+.+
T Consensus 307 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---~------~~~-----------~~~~~la~~~~~~g~~~~A~~~ 366 (537)
T 3fp2_A 307 PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN---P------ENV-----------YPYIQLACLLYKQGKFTESEAF 366 (537)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---T------TCS-----------HHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC---C------CCH-----------HHHHHHHHHHHHcCCHHHHHHH
Confidence 5556778889999999999999999999999881 1 111 3578999999999999999999
Q ss_pred HHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHh
Q 013867 297 LTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALAR 376 (435)
Q Consensus 297 ~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~ 376 (435)
|++++.+ +|+...++.++|.+|..+|++++| +..|++++++......-+-. ...+.+++.++..+
T Consensus 367 ~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A------~~~~~~a~~~~~~~~~~~~~-~~~~~~~a~~~~~~ 431 (537)
T 3fp2_A 367 FNETKLK--------FPTLPEVPTFFAEILTDRGDFDTA------IKQYDIAKRLEEVQEKIHVG-IGPLIGKATILARQ 431 (537)
T ss_dssp HHHHHHH--------CTTCTHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHHHHCSSCSST-THHHHHHHHHHHHH
T ss_pred HHHHHHh--------CCCChHHHHHHHHHHHHhCCHHHH------HHHHHHHHHcCCcchhhHHH-HHHHHHHHHHHHHH
Confidence 9999987 455566889999999999998876 88999999987322111111 12334566777777
Q ss_pred ----------cCHHHHhhHhhhhhhH----HHHHHHHHHHHhcccchhHH
Q 013867 377 ----------GGYAEALSVQQNRKDE----GERMKRWAEAAWRNRRVSLA 412 (435)
Q Consensus 377 ----------G~yaeal~~~~~r~~e----ae~~~~~a~~~~~~~r~~l~ 412 (435)
|+|++|+..+.+-... .+.+...+..+++.+++..|
T Consensus 432 ~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A 481 (537)
T 3fp2_A 432 SSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEA 481 (537)
T ss_dssp HTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred hhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHH
Confidence 8888887766332221 45566666666666665544
No 45
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.76 E-value=5.5e-17 Score=156.66 Aligned_cols=145 Identities=10% Similarity=0.045 Sum_probs=112.9
Q ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHH
Q 013867 222 AALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHM-GNFGDAEEILTRT 300 (435)
Q Consensus 222 ~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~q-G~y~eAe~l~~rA 300 (435)
+..++|.+|..+|+|++|+.+|++|++|..+. + . +. ....++++||.+|..+ |+|++|+.+|++|
T Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~-g---~---------~~-~~a~~~~~lg~~~~~~lg~~~~A~~~~~~A 144 (292)
T 1qqe_A 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHR-G---Q---------FR-RGANFKFELGEILENDLHDYAKAIDCYELA 144 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-T---C---------HH-HHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc-C---C---------HH-HHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 44567888999999999999999999996431 1 1 10 1234688999999997 9999999999999
Q ss_pred HHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHH
Q 013867 301 LTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYA 380 (435)
Q Consensus 301 L~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~ya 380 (435)
+.+.... .+++..+.+++++|.+|..+|+|++| ...|++++++....+..+..+...+.|++.++..+|+|.
T Consensus 145 l~~~~~~--~~~~~~~~~~~~lg~~~~~~g~~~~A------~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 216 (292)
T 1qqe_A 145 GEWYAQD--QSVALSNKCFIKCADLKALDGQYIEA------SDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAV 216 (292)
T ss_dssp HHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhC--CChHHHHHHHHHHHHHHHHhCCHHHH------HHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHH
Confidence 9998742 12334578899999999999998876 899999999873221111234446789999999999999
Q ss_pred HHhhHhhh
Q 013867 381 EALSVQQN 388 (435)
Q Consensus 381 eal~~~~~ 388 (435)
+|+..+.+
T Consensus 217 ~A~~~~~~ 224 (292)
T 1qqe_A 217 AAARTLQE 224 (292)
T ss_dssp HHHHHHHG
T ss_pred HHHHHHHH
Confidence 99887644
No 46
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.76 E-value=1.2e-17 Score=161.30 Aligned_cols=231 Identities=11% Similarity=0.005 Sum_probs=157.9
Q ss_pred CCChHHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013867 56 LNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVE 135 (435)
Q Consensus 56 ~~~~~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral 135 (435)
|+-++-|...-+.|....+ ..|+|++|+..|++++.+..+. .+++..+.+++++|.+|..+|+|++|++.|++++
T Consensus 30 ~~~~~~A~~~~~~a~~~~~---~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al 104 (292)
T 1qqe_A 30 SYKFEEAADLCVQAATIYR---LRKELNLAGDSFLKAADYQKKA--GNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAI 104 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HTTCTHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4434455555555543323 3689999999999999987654 3556788999999999999999999999999885
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCccccccc
Q 013867 136 NFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEE 215 (435)
Q Consensus 136 ~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~ 215 (435)
.+... .|.. .
T Consensus 105 ~l~~~------------------~g~~----------------------~------------------------------ 114 (292)
T 1qqe_A 105 QIFTH------------------RGQF----------------------R------------------------------ 114 (292)
T ss_dssp HHHHH------------------TTCH----------------------H------------------------------
T ss_pred HHHHH------------------cCCH----------------------H------------------------------
Confidence 43211 1110 0
Q ss_pred ccchhHHHHHHHHHHHHh-hchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHH
Q 013867 216 EGCTGSAALSYGEYLHAT-RNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAE 294 (435)
Q Consensus 216 ~~~~~~~a~~la~~~~~~-G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe 294 (435)
....+..++|.+|..+ |+|++|+.+|++|+++..... + + .....+++++|.+|..+|+|++|.
T Consensus 115 --~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~----~---------~-~~~~~~~~~lg~~~~~~g~~~~A~ 178 (292)
T 1qqe_A 115 --RGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQ----S---------V-ALSNKCFIKCADLKALDGQYIEAS 178 (292)
T ss_dssp --HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT----C---------H-HHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred --HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCC----C---------h-HHHHHHHHHHHHHHHHhCCHHHHH
Confidence 0012344567888896 999999999999999964211 0 0 012346789999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHH
Q 013867 295 EILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVAL 374 (435)
Q Consensus 295 ~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~ 374 (435)
.+|++++.+.... +.-+..+...+.++|.+|..+|++++| +..|++++++....+. ..-...+.++...+.
T Consensus 179 ~~~~~al~~~~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A------~~~~~~al~l~p~~~~--~~~~~~l~~l~~~~~ 249 (292)
T 1qqe_A 179 DIYSKLIKSSMGN-RLSQWSLKDYFLKKGLCQLAATDAVAA------ARTLQEGQSEDPNFAD--SRESNFLKSLIDAVN 249 (292)
T ss_dssp HHHHHHHHTTSSC-TTTGGGHHHHHHHHHHHHHHTTCHHHH------HHHHHGGGCC-----------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-CcccHHHHHHHHHHHHHHHHcCCHHHH------HHHHHHHHhhCCCCCC--cHHHHHHHHHHHHHH
Confidence 9999999874221 111234667899999999999998776 8999999887632211 111234445555554
Q ss_pred --HhcCHHHHhhHh
Q 013867 375 --ARGGYAEALSVQ 386 (435)
Q Consensus 375 --a~G~yaeal~~~ 386 (435)
..++|.+|+..+
T Consensus 250 ~~~~~~~~~A~~~~ 263 (292)
T 1qqe_A 250 EGDSEQLSEHCKEF 263 (292)
T ss_dssp TTCTTTHHHHHHHH
T ss_pred cCCHHHHHHHHHHh
Confidence 456788888877
No 47
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.75 E-value=2.4e-17 Score=181.00 Aligned_cols=166 Identities=16% Similarity=0.117 Sum_probs=138.5
Q ss_pred CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCC
Q 013867 102 LAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKP 181 (435)
Q Consensus 102 ~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~ 181 (435)
+.+|.-+.+++|||.+|.++|+|++|++.|++++++ .|+
T Consensus 3 gs~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l----------------------~P~------------------- 41 (723)
T 4gyw_A 3 GSCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV----------------------FPE------------------- 41 (723)
T ss_dssp ---CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------------CSC-------------------
T ss_pred CCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------------CCC-------------------
Confidence 568999999999999999999999999999998432 222
Q ss_pred CchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCC
Q 013867 182 ENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNT 261 (435)
Q Consensus 182 ~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~ 261 (435)
...+..++|.+|..+|+|++|+..|++||++ . |.
T Consensus 42 -------------------------------------~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---~------P~ 75 (723)
T 4gyw_A 42 -------------------------------------FAAAHSNLASVLQQQGKLQEALMHYKEAIRI---S------PT 75 (723)
T ss_dssp -------------------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---C------TT
T ss_pred -------------------------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---C------CC
Confidence 1123446788899999999999999999998 1 11
Q ss_pred cccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHH
Q 013867 262 LGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQ 341 (435)
Q Consensus 262 l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~A 341 (435)
...+++|||.+|..+|+|++|++.|++|+++ +|+.+.+++|||.+|..+|++++|
T Consensus 76 -----------~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l--------~P~~~~a~~~Lg~~~~~~g~~~eA------ 130 (723)
T 4gyw_A 76 -----------FADAYSNMGNTLKEMQDVQGALQCYTRAIQI--------NPAFADAHSNLASIHKDSGNIPEA------ 130 (723)
T ss_dssp -----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHH------
T ss_pred -----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHH------
Confidence 1247899999999999999999999999987 677788999999999999998876
Q ss_pred HHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHHHhhHh
Q 013867 342 EGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQ 386 (435)
Q Consensus 342 e~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~ 386 (435)
+..|++||++. |+....+.|++.++..+|+|++|...+
T Consensus 131 i~~~~~Al~l~-------P~~~~a~~~L~~~l~~~g~~~~A~~~~ 168 (723)
T 4gyw_A 131 IASYRTALKLK-------PDFPDAYCNLAHCLQIVCDWTDYDERM 168 (723)
T ss_dssp HHHHHHHHHHC-------SCCHHHHHHHHHHHHHTTCCTTHHHHH
T ss_pred HHHHHHHHHhC-------CCChHHHhhhhhHHHhcccHHHHHHHH
Confidence 89999999985 455567889999999999999987765
No 48
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.75 E-value=2.9e-16 Score=154.12 Aligned_cols=262 Identities=12% Similarity=0.004 Sum_probs=177.3
Q ss_pred HHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhh
Q 013867 61 VVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNS 140 (435)
Q Consensus 61 vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~ 140 (435)
.+..+.++|..+.. .|+|++|+.+|++++.+..+. .+....+.+++++|.+|..+|+|++|++.|++++.+.+.
T Consensus 52 ~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~ 125 (373)
T 1hz4_A 52 RIVATSVLGEVLHC----KGELTRSLALMQQTEQMARQH--DVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINE 125 (373)
T ss_dssp HHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh----cCcHHHHHHHHHHHHHHHHhc--CcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 45567778877743 689999999999999987664 334467888999999999999999999999999877654
Q ss_pred hHHH----HHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccc
Q 013867 141 ILGV----RVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEE 216 (435)
Q Consensus 141 ~L~i----~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~ 216 (435)
.-+. ...++.+++.++..+|+ +++|...+.. ++.. ..+.. +
T Consensus 126 ~~~~~~~~~~~~~~~la~~~~~~g~----------------------~~~A~~~~~~--al~~-----~~~~~------~ 170 (373)
T 1hz4_A 126 QHLEQLPMHEFLVRIRAQLLWAWAR----------------------LDEAEASARS--GIEV-----LSSYQ------P 170 (373)
T ss_dssp TTCTTSTHHHHHHHHHHHHHHHTTC----------------------HHHHHHHHHH--HHHH-----TTTSC------G
T ss_pred hccccCcHHHHHHHHHHHHHHHhcC----------------------HHHHHHHHHH--HHHH-----hhccC------c
Confidence 3110 01122223333333333 4433333222 2221 11110 0
Q ss_pred cchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 013867 217 GCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEI 296 (435)
Q Consensus 217 ~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l 296 (435)
+....+..+++.++..+|++++|..++++++++.. . .+. +..........++.++..+|++++|+.+
T Consensus 171 ~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~---~-~~~---------~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 237 (373)
T 1hz4_A 171 QQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLG---N-GKY---------HSDWISNANKVRVIYWQMTGDKAAAANW 237 (373)
T ss_dssp GGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT---T-SCC---------CHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh---c-cCc---------chhHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 11334566788999999999999999999999942 1 011 0000111112456779999999999999
Q ss_pred HHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHh
Q 013867 297 LTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALAR 376 (435)
Q Consensus 297 ~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~ 376 (435)
+++++.+. .+..|. ....+.++|.+|..+|++++| ..++++++++.+..+. .++......+++.++..+
T Consensus 238 ~~~a~~~~---~~~~~~-~~~~~~~la~~~~~~g~~~~A------~~~l~~a~~~~~~~~~-~~~~~~~~~~la~~~~~~ 306 (373)
T 1hz4_A 238 LRHTAKPE---FANNHF-LQGQWRNIARAQILLGEFEPA------EIVLEELNENARSLRL-MSDLNRNLLLLNQLYWQA 306 (373)
T ss_dssp HHHSCCCC---CTTCGG-GHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCCC---CCcchh-hHHHHHHHHHHHHHcCCHHHH------HHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHh
Confidence 99998743 222232 234678999999999998776 8999999999865432 234455677889999999
Q ss_pred cCHHHHhhHhh
Q 013867 377 GGYAEALSVQQ 387 (435)
Q Consensus 377 G~yaeal~~~~ 387 (435)
|++++|.....
T Consensus 307 g~~~~A~~~l~ 317 (373)
T 1hz4_A 307 GRKSDAQRVLL 317 (373)
T ss_dssp TCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 99999987653
No 49
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.75 E-value=2.3e-16 Score=158.95 Aligned_cols=276 Identities=12% Similarity=0.038 Sum_probs=197.3
Q ss_pred hHHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCC--CCCc----chHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013867 59 NPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDG--QLAE----SWRGISLLAMSTLLYESGNYVEAIEKLQ 132 (435)
Q Consensus 59 ~~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~l--G~~H----p~~A~~l~nLa~ly~~qGky~eA~~l~~ 132 (435)
|+.+......|..+.. ....|+|++|+.+|++++...+..+ .+++ |..+.++..+|.+|..+|+|++|++.|+
T Consensus 183 ~~~~~~~~~~~~~~~~-~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 261 (514)
T 2gw1_A 183 SNEADKELMNGLSNLY-KRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIK 261 (514)
T ss_dssp SCHHHHHHHHHHHHHS-SCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHH-hhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 4456666777776532 1236899999999999998322211 2333 8889999999999999999999999999
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccc
Q 013867 133 KVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGL 212 (435)
Q Consensus 133 ral~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~ 212 (435)
+++.+... ..++..++..+..+|.+..|....+.++.+. +. ....+...+ .+....|+++.|.
T Consensus 262 ~~l~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~---~~~~~~~l~-----~~~~~~~~~~~A~ 324 (514)
T 2gw1_A 262 KAIELFPR-----VNSYIYMALIMADRNDSTEYYNYFDKALKLD----SN---NSSVYYHRG-----QMNFILQNYDQAG 324 (514)
T ss_dssp HHHHHCCC-----HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC----TT---CTHHHHHHH-----HHHHHTTCTTHHH
T ss_pred HHHhhCcc-----HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC----cC---CHHHHHHHH-----HHHHHhCCHHHHH
Confidence 99887654 3345667778888998888877666554321 10 111111111 1122234444433
Q ss_pred ccc------ccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHH
Q 013867 213 QEE------EGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAH 286 (435)
Q Consensus 213 ~~~------~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~ 286 (435)
..+ .|....+...+|.+|..+|+|++|+.+|++++++. . .. ...+.++|.+|..
T Consensus 325 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~------~~-----------~~~~~~la~~~~~ 384 (514)
T 2gw1_A 325 KDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF---P------EA-----------PEVPNFFAEILTD 384 (514)
T ss_dssp HHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS---T------TC-----------SHHHHHHHHHHHH
T ss_pred HHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc---c------cC-----------HHHHHHHHHHHHH
Confidence 211 24445677888999999999999999999999871 1 11 1357899999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHH---hhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchh
Q 013867 287 MGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRN---KAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVE 363 (435)
Q Consensus 287 qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~---qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a 363 (435)
+|+|++|+.+|++++.+.... ++....+.++.++|.+|.. +|++++| ...|++++++. |+..
T Consensus 385 ~~~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~A------~~~~~~a~~~~-------~~~~ 449 (514)
T 2gw1_A 385 KNDFDKALKQYDLAIELENKL--DGIYVGIAPLVGKATLLTRNPTVENFIEA------TNLLEKASKLD-------PRSE 449 (514)
T ss_dssp TTCHHHHHHHHHHHHHHHHTS--SSCSSCSHHHHHHHHHHHTSCCTTHHHHH------HHHHHHHHHHC-------TTCH
T ss_pred CCCHHHHHHHHHHHHHhhhcc--chHHHHHHHHHHHHHHHhhhhhcCCHHHH------HHHHHHHHHhC-------cccH
Confidence 999999999999999875321 1112235589999999999 9998776 89999999874 3334
Q ss_pred hhhccHHHHHHHhcCHHHHhhHhh
Q 013867 364 TKVDRTDIVALARGGYAEALSVQQ 387 (435)
Q Consensus 364 ~~l~nla~~~~a~G~yaeal~~~~ 387 (435)
....+++.++..+|+|.+|...+.
T Consensus 450 ~~~~~la~~~~~~g~~~~A~~~~~ 473 (514)
T 2gw1_A 450 QAKIGLAQMKLQQEDIDEAITLFE 473 (514)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHH
Confidence 566789999999999999988764
No 50
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.74 E-value=1.5e-15 Score=153.09 Aligned_cols=262 Identities=14% Similarity=0.057 Sum_probs=185.2
Q ss_pred chHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhhhhhH----------HHHHHHHHHHHHHHHhcCCCcchHHHHHH
Q 013867 105 SWRGISLLAMSTLLYE---SGNYVEAIEKLQKVENFKNSIL----------GVRVAAMEALAGLYLQLGQDDTSSVVADK 171 (435)
Q Consensus 105 p~~A~~l~nLa~ly~~---qGky~eA~~l~~ral~i~e~~L----------~i~vaale~L~g~~~~~g~~~~A~~~~~~ 171 (435)
|+....+..+|..+.. +|+|++|++.|++++...+..+ .....++..++..+...|.+..|....+.
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 262 (514)
T 2gw1_A 183 SNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKK 262 (514)
T ss_dssp SCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3447778888888876 9999999999999988432222 22234566777888888988877766665
Q ss_pred HHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCccccccc------ccchhHHHHHHHHHHHHhhchHHHHHHHHH
Q 013867 172 CLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEE------EGCTGSAALSYGEYLHATRNFLLAKKFYQK 245 (435)
Q Consensus 172 ~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~------~~~~~~~a~~la~~~~~~G~y~eAe~ly~r 245 (435)
++... + +...+... +.+....|+++.|...+ .|....+...++.+|..+|+|++|+.+|++
T Consensus 263 ~l~~~----~----~~~~~~~l-----~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 329 (514)
T 2gw1_A 263 AIELF----P----RVNSYIYM-----ALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDK 329 (514)
T ss_dssp HHHHC----C----CHHHHHHH-----HHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHH
T ss_pred HHhhC----c----cHHHHHHH-----HHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 54331 1 01222111 12223446666554322 345566778899999999999999999999
Q ss_pred HHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHH
Q 013867 246 VIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALM 325 (435)
Q Consensus 246 AL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~l 325 (435)
++++. + .. ..++.++|.+|..+|+|++|..+|++++.+ +|+...++.++|.+
T Consensus 330 ~~~~~--------~-~~-----------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~ 381 (514)
T 2gw1_A 330 AKELD--------P-EN-----------IFPYIQLACLAYRENKFDDCETLFSEAKRK--------FPEAPEVPNFFAEI 381 (514)
T ss_dssp HHHTC--------S-SC-----------SHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--------STTCSHHHHHHHHH
T ss_pred HHHhC--------h-hh-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------cccCHHHHHHHHHH
Confidence 99871 1 11 135789999999999999999999999976 44455689999999
Q ss_pred HHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHH---hcCHHHHhhHhhhhhh----HHHHHHH
Q 013867 326 FRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALA---RGGYAEALSVQQNRKD----EGERMKR 398 (435)
Q Consensus 326 y~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a---~G~yaeal~~~~~r~~----eae~~~~ 398 (435)
|..+|++++| +..|++++++.... ++.......+.+++.++.. +|+|++|+..+..-.. -.+.+..
T Consensus 382 ~~~~~~~~~A------~~~~~~a~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 454 (514)
T 2gw1_A 382 LTDKNDFDKA------LKQYDLAIELENKL-DGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIG 454 (514)
T ss_dssp HHHTTCHHHH------HHHHHHHHHHHHTS-SSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHCCCHHHH------HHHHHHHHHhhhcc-chHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 9999998776 89999999987432 1111223467789999999 9999999887643222 2466667
Q ss_pred HHHHHhcccchhHHHH
Q 013867 399 WAEAAWRNRRVSLAEA 414 (435)
Q Consensus 399 ~a~~~~~~~r~~l~~~ 414 (435)
.+..+++.+++..|..
T Consensus 455 la~~~~~~g~~~~A~~ 470 (514)
T 2gw1_A 455 LAQMKLQQEDIDEAIT 470 (514)
T ss_dssp HHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhcCHHHHHH
Confidence 8888888777665543
No 51
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.73 E-value=7.9e-17 Score=149.71 Aligned_cols=237 Identities=14% Similarity=0.076 Sum_probs=167.5
Q ss_pred HHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHH
Q 013867 64 QMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILG 143 (435)
Q Consensus 64 ~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~ 143 (435)
.+.++|..+. ..|+|++|+.+|++++.+.. .....+.++|.+|..+|+|++|++.|++++....
T Consensus 5 ~~~~~a~~~~----~~~~~~~A~~~~~~~l~~~p--------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~---- 68 (272)
T 3u4t_A 5 VEFRYADFLF----KNNNYAEAIEVFNKLEAKKY--------NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVN---- 68 (272)
T ss_dssp CHHHHHHHHH----TTTCHHHHHHHHHHHHHTTC--------CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSC----
T ss_pred HHHHHHHHHH----HhcCHHHHHHHHHHHHHhCC--------CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccC----
Confidence 4567777774 36899999999999997653 2334788999999999999999999999866221
Q ss_pred HHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHH
Q 013867 144 VRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAA 223 (435)
Q Consensus 144 i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a 223 (435)
.+...+. .......++...+. +++| +....+++.. . |....+.
T Consensus 69 ----------------~~~~~~~-~~~~lg~~~~~~~~--~~~A--~~~~~~a~~~-----~-----------~~~~~~~ 111 (272)
T 3u4t_A 69 ----------------ATKAKSA-DFEYYGKILMKKGQ--DSLA--IQQYQAAVDR-----D-----------TTRLDMY 111 (272)
T ss_dssp ----------------TTTCCHH-HHHHHHHHHHHTTC--HHHH--HHHHHHHHHH-----S-----------TTCTHHH
T ss_pred ----------------chhHHHH-HHHHHHHHHHHccc--HHHH--HHHHHHHHhc-----C-----------cccHHHH
Confidence 1111111 11122233333232 4333 3233333331 1 2334577
Q ss_pred HHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 013867 224 LSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTK 303 (435)
Q Consensus 224 ~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I 303 (435)
.++|.+|..+|+|++|+.+|++++++ . + . ....+.++|.....+++|++|+..|++++.+
T Consensus 112 ~~l~~~~~~~~~~~~A~~~~~~al~~---~-----~-~-----------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 171 (272)
T 3u4t_A 112 GQIGSYFYNKGNFPLAIQYMEKQIRP---T-----T-T-----------DPKVFYELGQAYYYNKEYVKADSSFVKVLEL 171 (272)
T ss_dssp HHHHHHHHHTTCHHHHHHHHGGGCCS---S-----C-C-----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHhhc---C-----C-C-----------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88999999999999999999999977 1 1 1 1246789994444566999999999999987
Q ss_pred HHHhhCCCChhHHHHHHHHHHHHHHhhh---hhhhhhhHHHHHHHHHHHHHhcCC-CCCCCchhhhhccHHHHHHHhcCH
Q 013867 304 TEELFGSHHPKVGVVLTCLALMFRNKAM---QEHSSALLIQEGLYRRALEFLKAP-PLESEGVETKVDRTDIVALARGGY 379 (435)
Q Consensus 304 ~e~~lG~~HP~va~~L~nLA~ly~~qG~---~e~A~~~~~Ae~Ly~rAL~I~k~~-~~~hp~~a~~l~nla~~~~a~G~y 379 (435)
+|+....+.++|.+|..+|+ +++| ...|++++++.+.. .++.+.......+++.++..+|+|
T Consensus 172 --------~p~~~~~~~~~~~~~~~~~~~~~~~~A------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 237 (272)
T 3u4t_A 172 --------KPNIYIGYLWRARANAAQDPDTKQGLA------KPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDK 237 (272)
T ss_dssp --------STTCHHHHHHHHHHHHHHSTTCSSCTT------HHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCH
T ss_pred --------CccchHHHHHHHHHHHHcCcchhhHHH------HHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCH
Confidence 45557889999999999998 7666 89999999999542 222222456777899999999999
Q ss_pred HHHhhHhh
Q 013867 380 AEALSVQQ 387 (435)
Q Consensus 380 aeal~~~~ 387 (435)
++|+..+.
T Consensus 238 ~~A~~~~~ 245 (272)
T 3u4t_A 238 VKADAAWK 245 (272)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99888763
No 52
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.73 E-value=1.4e-16 Score=154.84 Aligned_cols=218 Identities=13% Similarity=0.075 Sum_probs=159.1
Q ss_pred HcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHH
Q 013867 120 ESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKG 199 (435)
Q Consensus 120 ~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~ 199 (435)
.+|+|++|+++++++.+...+.+ ++ -.+.+..|...++.+..++...+. |.+|... +.+++..
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~~----------~~---~~~~~~~A~~~~~~a~~~~~~~g~--~~~A~~~--~~~al~~ 65 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTSF----------MK---WKPDYDSAASEYAKAAVAFKNAKQ--LEQAKDA--YLQEAEA 65 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCCS----------SS---CSCCHHHHHHHHHHHHHHHHHTTC--HHHHHHH--HHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccccc----------cC---CCCCHHHHHHHHHHHHHHHHHcCC--HHHHHHH--HHHHHHH
Confidence 47899999999999876544321 10 025556677777777777766553 6655444 4444443
Q ss_pred HHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHH
Q 013867 200 LVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFA 279 (435)
Q Consensus 200 ~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~n 279 (435)
. ..+ ++. .....+..++|.+|..+|+|++|+.+|++|++|..+ .+ . +. ....++++
T Consensus 66 ~-~~~-~~~--------~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~-~g---~---------~~-~~a~~~~~ 121 (307)
T 2ifu_A 66 H-ANN-RSL--------FHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVE-NG---T---------PD-TAAMALDR 121 (307)
T ss_dssp H-HHT-TCH--------HHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHT-TT---C---------HH-HHHHHHHH
T ss_pred H-HHc-CCH--------HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH-cC---C---------HH-HHHHHHHH
Confidence 2 122 221 123456677889999999999999999999999642 11 1 11 12357889
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCC
Q 013867 280 LGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLES 359 (435)
Q Consensus 280 La~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~h 359 (435)
||.+|.. |+|++|+.+|++|+.+.+.. .+++..+.+++|+|.+|..+|+|++| ...|++++++....+. +
T Consensus 122 lg~~~~~-g~~~~A~~~~~~Al~~~~~~--~~~~~~~~~~~~lg~~~~~~g~~~~A------~~~~~~al~~~~~~~~-~ 191 (307)
T 2ifu_A 122 AGKLMEP-LDLSKAVHLYQQAAAVFENE--ERLRQAAELIGKASRLLVRQQKFDEA------AASLQKEKSMYKEMEN-Y 191 (307)
T ss_dssp HHHHHTT-TCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHHHHTTC-H
T ss_pred HHHHHHc-CCHHHHHHHHHHHHHHHHhC--CChhHHHHHHHHHHHHHHHcCCHHHH------HHHHHHHHHHHHHcCC-h
Confidence 9999999 99999999999999999872 23456789999999999999998877 8999999999864332 3
Q ss_pred CchhhhhccHHHHHHHhcCHHHHhhHhhh
Q 013867 360 EGVETKVDRTDIVALARGGYAEALSVQQN 388 (435)
Q Consensus 360 p~~a~~l~nla~~~~a~G~yaeal~~~~~ 388 (435)
+.....+.+++.++..+|+|.+|+..+.+
T Consensus 192 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 192 PTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44566778899999999999999887654
No 53
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.72 E-value=3.5e-16 Score=138.33 Aligned_cols=169 Identities=17% Similarity=0.207 Sum_probs=126.7
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchh
Q 013867 106 WRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYK 185 (435)
Q Consensus 106 ~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~ 185 (435)
.+++++++||.+|..+|+|++|++.|++++++.+... .++..++.+|..+|....
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~~~~~~--------------------- 57 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNV----ETLLKLGKTYMDIGLPND--------------------- 57 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHH---------------------
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHCCCHHH---------------------
Confidence 4678999999999999999999999999977654432 233344444444443322
Q ss_pred chhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccc
Q 013867 186 TYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSC 265 (435)
Q Consensus 186 eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~ 265 (435)
+ +....+++. .. +....+...++.++..+++|++|...+++++.+. . .
T Consensus 58 -a--~~~~~~~~~-----~~-----------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~---~------~---- 105 (184)
T 3vtx_A 58 -A--IESLKKFVV-----LD-----------TTSAEAYYILGSANFMIDEKQAAIDALQRAIALN---T------V---- 105 (184)
T ss_dssp -H--HHHHHHHHH-----HC-----------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---T------T----
T ss_pred -H--HHHHHHHHh-----cC-----------chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---c------c----
Confidence 2 212222222 11 2334566677888999999999999999999881 1 1
Q ss_pred cccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHH
Q 013867 266 NMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLY 345 (435)
Q Consensus 266 ~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly 345 (435)
...+..++|.+|..+|+|++|+..|++++++ +|+...++.++|.+|..+|++++| +..|
T Consensus 106 -------~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~lg~~~~~~g~~~~A------~~~~ 164 (184)
T 3vtx_A 106 -------YADAYYKLGLVYDSMGEHDKAIEAYEKTISI--------KPGFIRAYQSIGLAYEGKGLRDEA------VKYF 164 (184)
T ss_dssp -------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHH------HHHH
T ss_pred -------chHHHHHHHHHHHHhCCchhHHHHHHHHHHh--------cchhhhHHHHHHHHHHHCCCHHHH------HHHH
Confidence 1145789999999999999999999999987 577778999999999999998877 8999
Q ss_pred HHHHHHh
Q 013867 346 RRALEFL 352 (435)
Q Consensus 346 ~rAL~I~ 352 (435)
++||++-
T Consensus 165 ~~al~~~ 171 (184)
T 3vtx_A 165 KKALEKE 171 (184)
T ss_dssp HHHHHTT
T ss_pred HHHHhCC
Confidence 9999875
No 54
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.71 E-value=1e-15 Score=147.15 Aligned_cols=200 Identities=11% Similarity=0.047 Sum_probs=150.4
Q ss_pred ChHHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 013867 58 SNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENF 137 (435)
Q Consensus 58 ~~~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i 137 (435)
.|+....+.+.+..+. .+|+|++|+..|++++.+.... ++.+..+..+..+|.+|..+|+|++|++.|++++.+
T Consensus 71 ~~~~~~~l~~~~~~~~----~~~~y~~A~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 144 (293)
T 2qfc_A 71 DIERKKQFKDQVIMLC----KQKRYKEIYNKVWNELKKEEYH--PEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQ 144 (293)
T ss_dssp HHHHHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHTCCCC--HHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTT
T ss_pred chhHHHHHHHHHHHHH----HhhhHHHHHHHHHHHhccccCC--hhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 4555566666666663 3678999999999999876542 333456677888999999999999999999887543
Q ss_pred hhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCccccccccc
Q 013867 138 KNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEG 217 (435)
Q Consensus 138 ~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~ 217 (435)
..+. .+ .+
T Consensus 145 ~~~~-------------------~~--------------------~~--------------------------------- 152 (293)
T 2qfc_A 145 QLTG-------------------ID--------------------VY--------------------------------- 152 (293)
T ss_dssp CCCS-------------------SC--------------------TT---------------------------------
T ss_pred HhcC-------------------Cc--------------------hH---------------------------------
Confidence 2110 00 00
Q ss_pred chhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 013867 218 CTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEIL 297 (435)
Q Consensus 218 ~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~ 297 (435)
....+.+++|.+|..+|+|++|+.+|++|+++.+.... .......+++|+|.+|..+|+|++|..+|
T Consensus 153 ~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~-------------~~~~~~~~~~nlg~~y~~~~~y~~Al~~~ 219 (293)
T 2qfc_A 153 QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHD-------------NEEFDVKVRYNHAKALYLDSRYEESLYQV 219 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC-------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCc-------------cccchHHHHHhHHHHHHHHhhHHHHHHHH
Confidence 01124456788899999999999999999999653211 11123357899999999999999999999
Q ss_pred HHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCC
Q 013867 298 TRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAP 355 (435)
Q Consensus 298 ~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~ 355 (435)
++|+.+..+ ..+++.++.+++|+|.+|..+|++++|. +..|++|++|.+..
T Consensus 220 ~kal~~~~~--~~~~~~~~~~~~~lg~~y~~~g~~~~Ai-----~~~~~~Al~~~~~~ 270 (293)
T 2qfc_A 220 NKAIEISCR--INSMALIGQLYYQRGECLRKLEYEEAEI-----EDAYKKASFFFDIL 270 (293)
T ss_dssp HHHHHHHHH--TTBCSSHHHHHHHHHHHHHHTTCCHHHH-----HHHHHHHHHHHHHT
T ss_pred HHHHHHHHh--cCcHHHHHHHHHHHHHHHHHcCCcHHHH-----HHHHHHHHHHHHHh
Confidence 999999854 5678889999999999999999987651 67799999999754
No 55
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.71 E-value=1.4e-15 Score=142.60 Aligned_cols=218 Identities=12% Similarity=0.091 Sum_probs=161.8
Q ss_pred ChHHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 013867 58 SNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENF 137 (435)
Q Consensus 58 ~~~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i 137 (435)
.|..+..+.+.|..+.+ .|+|++|+..|++++... |++|.....+.+||.+|..+|+|++|++.|++++.+
T Consensus 11 ~~~~~~~~~~~a~~~~~----~g~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~ 81 (261)
T 3qky_A 11 RHSSPQEAFERAMEFYN----QGKYDRAIEYFKAVFTYG-----RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQI 81 (261)
T ss_dssp CCSSHHHHHHHHHHHHH----TTCHHHHHHHHHHHGGGC-----SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHhC-----CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 34456678888888843 689999999999999765 677888999999999999999999999999998543
Q ss_pred hhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCccccccccc
Q 013867 138 KNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEG 217 (435)
Q Consensus 138 ~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~ 217 (435)
.|....
T Consensus 82 ----------------------~p~~~~---------------------------------------------------- 87 (261)
T 3qky_A 82 ----------------------YQIDPR---------------------------------------------------- 87 (261)
T ss_dssp ----------------------CTTCTT----------------------------------------------------
T ss_pred ----------------------CCCCch----------------------------------------------------
Confidence 222100
Q ss_pred chhHHHHHHHHHHHH--------hhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHH------------
Q 013867 218 CTGSAALSYGEYLHA--------TRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAAT------------ 277 (435)
Q Consensus 218 ~~~~~a~~la~~~~~--------~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l------------ 277 (435)
...+...+|.++.. +|+|++|+..|++++.+. ++++. . ..++
T Consensus 88 -~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~------p~~~~-~----------~~a~~~~~~~~~~~~~ 149 (261)
T 3qky_A 88 -VPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY------PNHEL-V----------DDATQKIRELRAKLAR 149 (261)
T ss_dssp -HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC------TTCTT-H----------HHHHHHHHHHHHHHHH
T ss_pred -hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC------cCchh-H----------HHHHHHHHHHHHHHHH
Confidence 00011122333333 899999999999999882 11111 1 1122
Q ss_pred --HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhh----hhhHHHHHHHHHHHHH
Q 013867 278 --FALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHS----SALLIQEGLYRRALEF 351 (435)
Q Consensus 278 --~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A----~~~~~Ae~Ly~rAL~I 351 (435)
.++|.+|..+|+|++|...|++++.+ -|++|.....+.++|.+|..+|..+.+ ..+.+|...|+++++.
T Consensus 150 ~~~~la~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 150 KQYEAARLYERRELYEAAAVTYEAVFDA-----YPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH-----CCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 78999999999999999999999985 478888999999999999988332110 1133448999998887
Q ss_pred hcCCCCCCCchhhhhccHHHHHHHhcCHHHHhhH
Q 013867 352 LKAPPLESEGVETKVDRTDIVALARGGYAEALSV 385 (435)
Q Consensus 352 ~k~~~~~hp~~a~~l~nla~~~~a~G~yaeal~~ 385 (435)
. |++|.+......++.++...|+++++..+
T Consensus 225 ~----p~~~~~~~a~~~l~~~~~~~~~~~~~~~~ 254 (261)
T 3qky_A 225 F----PDSPLLRTAEELYTRARQRLTELEGDASL 254 (261)
T ss_dssp C----TTCTHHHHHHHHHHHHHHHHHHHHTCTTC
T ss_pred C----CCChHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence 6 77888777788888888888888776654
No 56
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.71 E-value=3.6e-16 Score=142.18 Aligned_cols=205 Identities=15% Similarity=0.155 Sum_probs=133.7
Q ss_pred ChHHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 013867 58 SNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENF 137 (435)
Q Consensus 58 ~~~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i 137 (435)
..-.+..+.++|..+. ..|+|++|+.+|++++.. .|.....+..+|.+|..+|+|++|+..|++++++
T Consensus 19 ~~~~~~~~~~~a~~~~----~~~~~~~A~~~~~~~l~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 86 (243)
T 2q7f_A 19 SHMASMTGGQQMGRGS----EFGDYEKAAEAFTKAIEE--------NKEDAIPYINFANLLSSVNELERALAFYDKALEL 86 (243)
T ss_dssp ---------------------------CCTTHHHHHTT--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHH----HhhCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 3345566777777774 468999999999999963 3555788999999999999999999999998765
Q ss_pred hhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCccccccccc
Q 013867 138 KNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEG 217 (435)
Q Consensus 138 ~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~ 217 (435)
..... .++..++..+..+|. +++|.. ...+++.. . +
T Consensus 87 ~~~~~----~~~~~la~~~~~~~~----------------------~~~A~~--~~~~~~~~-----~-----------~ 122 (243)
T 2q7f_A 87 DSSAA----TAYYGAGNVYVVKEM----------------------YKEAKD--MFEKALRA-----G-----------M 122 (243)
T ss_dssp CTTCH----HHHHHHHHHHHHTTC----------------------HHHHHH--HHHHHHHH-----T-----------C
T ss_pred CCcch----HHHHHHHHHHHHhcc----------------------HHHHHH--HHHHHHHh-----C-----------C
Confidence 43221 112222222322222 333322 23333321 1 2
Q ss_pred chhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 013867 218 CTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEIL 297 (435)
Q Consensus 218 ~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~ 297 (435)
....+...+|.+|..+|+|++|+.+|++++++. . . ....+.++|.+|..+|+|++|+..|
T Consensus 123 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~------~-----------~~~~~~~l~~~~~~~~~~~~A~~~~ 182 (243)
T 2q7f_A 123 ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN---E------N-----------DTEARFQFGMCLANEGMLDEALSQF 182 (243)
T ss_dssp CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC---T------T-----------CHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---C------c-----------cHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 234566778999999999999999999999881 1 1 0135689999999999999999999
Q ss_pred HHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 298 TRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 298 ~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
++++.+ +|+...++.++|.+|..+|++++| ...|++++++.
T Consensus 183 ~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A------~~~~~~~~~~~ 223 (243)
T 2q7f_A 183 AAVTEQ--------DPGHADAFYNAGVTYAYKENREKA------LEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHH--------CTTCHHHHHHHHHHHHHTTCTTHH------HHHHHHHHHHC
T ss_pred HHHHHh--------CcccHHHHHHHHHHHHHccCHHHH------HHHHHHHHccC
Confidence 999986 355566899999999999998876 89999999875
No 57
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.71 E-value=7.8e-16 Score=147.93 Aligned_cols=215 Identities=10% Similarity=0.065 Sum_probs=155.1
Q ss_pred ChHHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 013867 58 SNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENF 137 (435)
Q Consensus 58 ~~~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i 137 (435)
.++....+.+.+..+. ..|+|++|+.+|++++...... ++....+..+.++|.+|..+|+|++|++.|++++.+
T Consensus 71 ~~~~~~~l~~~i~~~~----~~~~y~~a~~~~~~~l~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~ 144 (293)
T 3u3w_A 71 DIERKKQFKDQVIMLC----KQKRYKEIYNKVWNELKKEEYH--PEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQ 144 (293)
T ss_dssp CHHHHHHHHHHHHHHH----HTTCHHHHHHHHHHHHTTCCCC--HHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHT
T ss_pred cchhHHHHHHHHHHHH----HHhhHHHHHHHHHHHhccccCC--hHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH
Confidence 3556666666555553 3579999999999999754321 111223667778999999999999999999998543
Q ss_pred hhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCccccccccc
Q 013867 138 KNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEG 217 (435)
Q Consensus 138 ~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~ 217 (435)
... ..+ .+.
T Consensus 145 ~~~-------------------~~~--------------------~~~-------------------------------- 153 (293)
T 3u3w_A 145 QLT-------------------GID--------------------VYQ-------------------------------- 153 (293)
T ss_dssp CCC-------------------CSC--------------------TTH--------------------------------
T ss_pred hcc-------------------ccc--------------------HHH--------------------------------
Confidence 210 000 000
Q ss_pred chhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 013867 218 CTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEIL 297 (435)
Q Consensus 218 ~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~ 297 (435)
...+.+++|.+|..+|+|++|+.+|++|+++.++... . ......+++|+|.+|..+|+|++|..+|
T Consensus 154 -~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~---~----------~~~~~~~~~nlg~~y~~~~~y~~A~~~~ 219 (293)
T 3u3w_A 154 -NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHD---N----------EEFDVKVRYNHAKALYLDSRYEESLYQV 219 (293)
T ss_dssp -HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSC---C----------HHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc---c----------hhHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 0124556788999999999999999999999654211 0 1123457899999999999999999999
Q ss_pred HHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhh-hhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHH
Q 013867 298 TRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAM-QEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVA 373 (435)
Q Consensus 298 ~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~-~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~ 373 (435)
++|+.+..+. .+++.++.+++++|.+|..+|+ +++| ...|++|++|.+.. +.+.....+.+.....
T Consensus 220 ~~al~~~~~~--~~~~~~~~~~~~lg~~~~~~g~~~~~A------~~~~~~Al~i~~~~--~~~~~~~~l~~~~~~~ 286 (293)
T 3u3w_A 220 NKAIEISCRI--NSMALIGQLYYQRGECLRKLEYEEAEI------EDAYKKASFFFDIL--EMHAYKEALVNKISRL 286 (293)
T ss_dssp HHHHHHHHHT--TBCTTHHHHHHHHHHHHHHTTCCHHHH------HHHHHHHHHHHHHT--TCTGGGGGGTTC----
T ss_pred HHHHHHHHHc--CcHHHHHHHHHHHHHHHHHhCCcHHHH------HHHHHHHHHHHHHh--CCHHHHHHHHHHHHHH
Confidence 9999998875 5678899999999999999995 5766 89999999999864 3344555555444443
No 58
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.69 E-value=3.6e-15 Score=137.22 Aligned_cols=208 Identities=9% Similarity=-0.013 Sum_probs=150.6
Q ss_pred CChHH-HHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013867 57 NSNPV-VLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVE 135 (435)
Q Consensus 57 ~~~~v-A~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral 135 (435)
..|.. +..+..+|..+.. .|+|++|+.+|++++.+. |.....+.++|.+|..+|+|++|++.|++++
T Consensus 31 ~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 98 (252)
T 2ho1_A 31 KGRDEARDAYIQLGLGYLQ----RGNTEQAKVPLRKALEID--------PSSADAHAALAVVFQTEMEPKLADEEYRKAL 98 (252)
T ss_dssp CCHHHHHHHHHHHHHHHHH----TTCTGGGHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcC--------CChHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444 8888999998853 689999999999999764 4457889999999999999999999999986
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCccccccc
Q 013867 136 NFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEE 215 (435)
Q Consensus 136 ~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~ 215 (435)
.+..... .++..+ ..++...+. +++|... ..+++. .+.
T Consensus 99 ~~~~~~~----~~~~~l--------------------a~~~~~~g~--~~~A~~~--~~~~~~------~~~-------- 136 (252)
T 2ho1_A 99 ASDSRNA----RVLNNY--------------------GGFLYEQKR--YEEAYQR--LLEASQ------DTL-------- 136 (252)
T ss_dssp HHCTTCH----HHHHHH--------------------HHHHHHTTC--HHHHHHH--HHHHTT------CTT--------
T ss_pred HHCcCcH----HHHHHH--------------------HHHHHHHhH--HHHHHHH--HHHHHh------Ccc--------
Confidence 6533211 112222 222322221 3333222 222221 111
Q ss_pred ccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHH
Q 013867 216 EGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEE 295 (435)
Q Consensus 216 ~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~ 295 (435)
.+....+...+|.+|..+|+|++|+.+|++++++. . . ...++.+||.+|..+|+|++|..
T Consensus 137 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---~------~-----------~~~~~~~la~~~~~~g~~~~A~~ 196 (252)
T 2ho1_A 137 YPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN---R------N-----------QPSVALEMADLLYKEREYVPARQ 196 (252)
T ss_dssp CTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---S------C-----------CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---c------c-----------cHHHHHHHHHHHHHcCCHHHHHH
Confidence 13345667778999999999999999999999871 1 1 01356899999999999999999
Q ss_pred HHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 296 ILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 296 l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
+|++++.+ .|+....+..++.+|..+|++++| ..+|++++++.
T Consensus 197 ~~~~~~~~--------~~~~~~~~~~~~~~~~~~g~~~~A------~~~~~~~~~~~ 239 (252)
T 2ho1_A 197 YYDLFAQG--------GGQNARSLLLGIRLAKVFEDRDTA------ASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHTT--------SCCCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHC
T ss_pred HHHHHHHh--------CcCcHHHHHHHHHHHHHccCHHHH------HHHHHHHHHHC
Confidence 99999873 344556788999999999998776 88999998875
No 59
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.69 E-value=4.9e-15 Score=135.22 Aligned_cols=212 Identities=14% Similarity=0.102 Sum_probs=148.9
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCch
Q 013867 105 SWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENY 184 (435)
Q Consensus 105 p~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~ 184 (435)
++.+..+.++|..|..+|+|++|++.|++++.+. .. ..++..++..+..+|.+..|......++.+.....
T Consensus 2 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~----~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~---- 72 (258)
T 3uq3_A 2 GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KD----ITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMR---- 72 (258)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CC----THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT----
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-cc----HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccc----
Confidence 4578899999999999999999999999997654 22 12334444445555544444333333222221110
Q ss_pred hchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH--------------
Q 013867 185 KTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVL-------------- 250 (435)
Q Consensus 185 ~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~-------------- 250 (435)
.+ .+....+...+|.+|..+|+|++|+.+|++++.+.
T Consensus 73 ---------------------~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 123 (258)
T 3uq3_A 73 ---------------------AD--------YKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEK 123 (258)
T ss_dssp ---------------------CC--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred ---------------------cc--------hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHH
Confidence 00 01123455667778888888888888888888751
Q ss_pred -----HHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHH
Q 013867 251 -----AEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALM 325 (435)
Q Consensus 251 -----~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~l 325 (435)
++... . .|+ ....+.++|.+|..+|+|++|...|++++.+ +|+...++.++|.+
T Consensus 124 a~~~~~~~~~------~-----~~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~ 182 (258)
T 3uq3_A 124 ELKKAEAEAY------V-----NPE--KAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--------APEDARGYSNRAAA 182 (258)
T ss_dssp HHHHHHHHHH------C-----CHH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHH------c-----Ccc--hHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CcccHHHHHHHHHH
Confidence 00000 0 122 2346789999999999999999999999986 35566889999999
Q ss_pred HHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHHHhhHhhh
Q 013867 326 FRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQQN 388 (435)
Q Consensus 326 y~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~~~ 388 (435)
|..+|++++| +..|++++++. |+....+.+++.++..+|+|.+|+..+.+
T Consensus 183 ~~~~~~~~~A------~~~~~~al~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 183 LAKLMSFPEA------IADCNKAIEKD-------PNFVRAYIRKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp HHHTTCHHHH------HHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHhCCHHHH------HHHHHHHHHhC-------HHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 9999998776 89999999875 33345677899999999999999887643
No 60
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.69 E-value=5.5e-16 Score=160.72 Aligned_cols=221 Identities=11% Similarity=0.026 Sum_probs=160.5
Q ss_pred HHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCC
Q 013867 84 QGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNY-VEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQD 162 (435)
Q Consensus 84 eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky-~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~g~~ 162 (435)
+...-+++++...++.. ...|..+..+.++|.+|..+|+| ++|++.|++++++.... ..++..++.+|..+|.
T Consensus 79 ~~~~~~~~al~~l~~~~-~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~----~~a~~~lg~~~~~~g~- 152 (474)
T 4abn_A 79 DVQEEMEKTLQQMEEVL-GSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPEL----VEAWNQLGEVYWKKGD- 152 (474)
T ss_dssp HHHHHHHHHHHHHHHHH-TTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCC-
Confidence 33444444444333222 34567899999999999999999 99999999997765432 1233444444444443
Q ss_pred cchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHh---------
Q 013867 163 DTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHAT--------- 233 (435)
Q Consensus 163 ~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~--------- 233 (435)
+++|.. .+.+++.. . |. ..+..++|.+|..+
T Consensus 153 ---------------------~~~A~~--~~~~al~~-----~-----------p~-~~~~~~lg~~~~~~~~~~~~~~~ 192 (474)
T 4abn_A 153 ---------------------VTSAHT--CFSGALTH-----C-----------KN-KVSLQNLSMVLRQLQTDSGDEHS 192 (474)
T ss_dssp ---------------------HHHHHH--HHHHHHTT-----C-----------CC-HHHHHHHHHHHTTCCCSCHHHHH
T ss_pred ---------------------HHHHHH--HHHHHHhh-----C-----------CC-HHHHHHHHHHHHHhccCChhhhh
Confidence 332222 22333321 1 22 35667788888888
Q ss_pred hchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHHHH
Q 013867 234 RNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHM--------GNFGDAEEILTRTLTKTE 305 (435)
Q Consensus 234 G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~q--------G~y~eAe~l~~rAL~I~e 305 (435)
|+|++|+.+|++|+++. + . ...++++||.+|..+ |+|++|+..|++|+.+
T Consensus 193 g~~~~A~~~~~~al~~~--------p-~-----------~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-- 250 (474)
T 4abn_A 193 RHVMDSVRQAKLAVQMD--------V-L-----------DGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV-- 250 (474)
T ss_dssp HHHHHHHHHHHHHHHHC--------T-T-----------CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH--
T ss_pred hhHHHHHHHHHHHHHhC--------C-C-----------CHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh--
Confidence 99999999999999981 1 1 124678999999999 9999999999999998
Q ss_pred HhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHHHhhH
Q 013867 306 ELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSV 385 (435)
Q Consensus 306 ~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yaeal~~ 385 (435)
.|.+|+....+++||.+|..+|++++| +..|++|+++. |+......+++.++...|++++|+..
T Consensus 251 ---~p~~~~~~~~~~~lg~~~~~~g~~~~A------~~~~~~al~l~-------p~~~~a~~~l~~~~~~lg~~~eAi~~ 314 (474)
T 4abn_A 251 ---DRKASSNPDLHLNRATLHKYEESYGEA------LEGFSQAAALD-------PAWPEPQQREQQLLEFLSRLTSLLES 314 (474)
T ss_dssp ---CGGGGGCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHC-------TTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---CCCcccCHHHHHHHHHHHHHcCCHHHH------HHHHHHHHHhC-------CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 232448899999999999999998876 89999999985 33345677899999999999999987
Q ss_pred hhh
Q 013867 386 QQN 388 (435)
Q Consensus 386 ~~~ 388 (435)
+.+
T Consensus 315 ~~~ 317 (474)
T 4abn_A 315 KGK 317 (474)
T ss_dssp TTT
T ss_pred hcc
Confidence 643
No 61
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.69 E-value=1.3e-15 Score=140.83 Aligned_cols=189 Identities=14% Similarity=0.107 Sum_probs=142.8
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchh
Q 013867 106 WRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYK 185 (435)
Q Consensus 106 ~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~ 185 (435)
..+..+.++|.+|..+|+|++|+..|++++.+ .|+
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----------------------~p~----------------------- 37 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKE----------------------NPQ----------------------- 37 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTT----------------------SSS-----------------------
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------------CCC-----------------------
Confidence 34557889999999999999999999887321 222
Q ss_pred chhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccc
Q 013867 186 TYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSC 265 (435)
Q Consensus 186 eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~ 265 (435)
...+..++|.++..+|+|++|+..|++++++.
T Consensus 38 ---------------------------------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--------------- 69 (217)
T 2pl2_A 38 ---------------------------------DPEALYWLARTQLKLGLVNPALENGKTLVART--------------- 69 (217)
T ss_dssp ---------------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------
T ss_pred ---------------------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------------
Confidence 11233456777888999999999999999981
Q ss_pred cccchHHHHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhh
Q 013867 266 NMALEEVALAATFALGQLEAHM-----------GNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEH 334 (435)
Q Consensus 266 ~~~~~~~~l~~l~nLa~ly~~q-----------G~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~ 334 (435)
|+ ...+..+||.+|..+ |+|++|+..|++++++ .|+-..++.++|.+|..+|++++
T Consensus 70 ---P~--~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~P~~~~~~~~lg~~~~~~g~~~~ 136 (217)
T 2pl2_A 70 ---PR--YLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV--------NPRYAPLHLQRGLVYALLGERDK 136 (217)
T ss_dssp ---TT--CHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred ---CC--cHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCChHH
Confidence 11 124678999999999 9999999999999997 56667889999999999999887
Q ss_pred hhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHHHhhHhhhhhhH----HHHHHHHHHHHhcccchh
Q 013867 335 SSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQQNRKDE----GERMKRWAEAAWRNRRVS 410 (435)
Q Consensus 335 A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~~~r~~e----ae~~~~~a~~~~~~~r~~ 410 (435)
| +..|++|+++. +++ ....+++.++..+|+|++|+..+.+.... .+.+...+..+...+++.
T Consensus 137 A------~~~~~~al~~~-----~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~ 202 (217)
T 2pl2_A 137 A------EASLKQALALE-----DTP---EIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAE 202 (217)
T ss_dssp H------HHHHHHHHHHC-----CCH---HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC-----
T ss_pred H------HHHHHHHHhcc-----cch---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHH
Confidence 6 89999999986 233 35678999999999999999887554332 466777888888888866
Q ss_pred HHHH
Q 013867 411 LAEA 414 (435)
Q Consensus 411 l~~~ 414 (435)
.|..
T Consensus 203 ~A~~ 206 (217)
T 2pl2_A 203 EAAR 206 (217)
T ss_dssp ----
T ss_pred HHHH
Confidence 5543
No 62
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.68 E-value=5.7e-15 Score=131.10 Aligned_cols=177 Identities=12% Similarity=0.139 Sum_probs=134.0
Q ss_pred ChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 013867 78 SDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYL 157 (435)
Q Consensus 78 s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~ 157 (435)
..|+|++|+.+++... .+.+..+.+++++|.+|..+|+|++|++.|++++.+.+..
T Consensus 4 ~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---------------- 59 (203)
T 3gw4_A 4 EAHDYALAERQAQALL--------AHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKS---------------- 59 (203)
T ss_dssp ---CHHHHHHHHHHHH--------TSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT----------------
T ss_pred ccccHHHHHHHHHHhc--------CChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHc----------------
Confidence 3689999999555442 1334789999999999999999999999999985543211
Q ss_pred hcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchH
Q 013867 158 QLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFL 237 (435)
Q Consensus 158 ~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~ 237 (435)
+.. +....+..++|.+|..+|+|+
T Consensus 60 --~~~------------------------------------------------------~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 60 --GDH------------------------------------------------------TAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp --CCH------------------------------------------------------HHHHHHHHHHHHHHHHTTCHH
T ss_pred --CCc------------------------------------------------------HHHHHHHHHHHHHHHHcCCHH
Confidence 100 001124455788889999999
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHH
Q 013867 238 LAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGV 317 (435)
Q Consensus 238 eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~ 317 (435)
+|+.+|++++++.++.. +. + .....++++||.+|..+|+|++|+.+|++++.+.++. .+.+..+.
T Consensus 84 ~A~~~~~~al~~~~~~~---~~---------~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~ 148 (203)
T 3gw4_A 84 AARRCFLEERELLASLP---ED---------P-LAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQA--DDQVAIAC 148 (203)
T ss_dssp HHHHHHHHHHHHHHHSC---CC---------H-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--TCHHHHHH
T ss_pred HHHHHHHHHHHHHHHcC---cc---------H-HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc--cchHHHHH
Confidence 99999999999975311 11 0 0133578899999999999999999999999997653 34455788
Q ss_pred HHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCC
Q 013867 318 VLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAP 355 (435)
Q Consensus 318 ~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~ 355 (435)
++.++|.+|..+|++++| ...|++|+++.+..
T Consensus 149 ~~~~la~~~~~~g~~~~A------~~~~~~al~~~~~~ 180 (203)
T 3gw4_A 149 AFRGLGDLAQQEKNLLEA------QQHWLRARDIFAEL 180 (203)
T ss_dssp HHHHHHHHHHHTTCHHHH------HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCcCHHHH------HHHHHHHHHHHHHc
Confidence 899999999999998876 89999999999754
No 63
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.68 E-value=9.3e-16 Score=144.96 Aligned_cols=238 Identities=11% Similarity=0.030 Sum_probs=156.7
Q ss_pred HHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhh
Q 013867 62 VLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSI 141 (435)
Q Consensus 62 A~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~ 141 (435)
+..+..+|..+.+ .|+|++|+.+|++++.+. |....++.++|.+|..+|+|++|++.|++++.+....
T Consensus 55 ~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 122 (327)
T 3cv0_A 55 EEAWRSLGLTQAE----NEKDGLAIIALNHARMLD--------PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQY 122 (327)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTT
T ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcC--------cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc
Confidence 3445567777743 589999999999999874 4457789999999999999999999999998765432
Q ss_pred HHHHHHH---------HHHHHHH--HHhcCCCcchHHHHHHH--------------HHHHHhcCCCchhchhhHHHHHHH
Q 013867 142 LGVRVAA---------MEALAGL--YLQLGQDDTSSVVADKC--------------LQLCEKHKPENYKTYGAVNSRANA 196 (435)
Q Consensus 142 L~i~vaa---------le~L~g~--~~~~g~~~~A~~~~~~~--------------~~l~~~~~~~~~~eaeal~~~a~A 196 (435)
....... ...+++. +..+|.+..|......+ ..++...+. +++|.. ...++
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--~~~A~~--~~~~~ 198 (327)
T 3cv0_A 123 EQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNN--YDSAAA--NLRRA 198 (327)
T ss_dssp TTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC--HHHHHH--HHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcc--HHHHHH--HHHHH
Confidence 1110000 0000011 22333333333322222 222222221 322222 22222
Q ss_pred HHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHH
Q 013867 197 VKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAA 276 (435)
Q Consensus 197 i~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~ 276 (435)
+.. .|....+...+|.+|..+|+|++|+.+|++++++. . . ...+
T Consensus 199 ~~~----------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---~------~-----------~~~~ 242 (327)
T 3cv0_A 199 VEL----------------RPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN---P------G-----------YVRV 242 (327)
T ss_dssp HHH----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---T------T-----------CHHH
T ss_pred HHh----------------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---C------C-----------CHHH
Confidence 211 23445677888999999999999999999999881 1 1 1135
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChh----HHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 277 TFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPK----VGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 277 l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~----va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
+.++|.+|..+|+|++|...|++++.+.....++.+.. ...++.++|.+|..+|++++| ...|+++++++
T Consensus 243 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A------~~~~~~~l~~~ 316 (327)
T 3cv0_A 243 MYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLV------ELTYAQNVEPF 316 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHH------HHHTTCCSHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHH------HHHHHHHHHhc
Confidence 78999999999999999999999999865543333322 788999999999999998776 88999999988
Q ss_pred c-CCCC
Q 013867 353 K-APPL 357 (435)
Q Consensus 353 k-~~~~ 357 (435)
. ..++
T Consensus 317 ~~~~~~ 322 (327)
T 3cv0_A 317 AKEFGL 322 (327)
T ss_dssp HHHTTS
T ss_pred chhhhH
Confidence 4 3343
No 64
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.68 E-value=8.1e-15 Score=137.86 Aligned_cols=222 Identities=14% Similarity=0.168 Sum_probs=160.6
Q ss_pred HHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Q 013867 62 VLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYE----SGNYVEAIEKLQKVENF 137 (435)
Q Consensus 62 A~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~----qGky~eA~~l~~ral~i 137 (435)
+..+..+|..+.. .|+|++|+.+|++++. ++ -..++.+||.+|.. +|++++|+..|+++.++
T Consensus 6 ~~a~~~lg~~~~~----~~~~~~A~~~~~~a~~-------~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~ 71 (273)
T 1ouv_A 6 PKELVGLGAKSYK----EKDFTQAKKYFEKACD-------LK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL 71 (273)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHH-------TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHh----CCCHHHHHHHHHHHHH-------CC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC
Confidence 4566778888743 5799999999999997 22 23678999999999 99999999999998654
Q ss_pred hhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCccccccccc
Q 013867 138 KNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEG 217 (435)
Q Consensus 138 ~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~ 217 (435)
. ...++.+++..|.. |. ....++++| +..+.+++. . +
T Consensus 72 ~------~~~a~~~lg~~~~~-g~-----------------~~~~~~~~A--~~~~~~a~~-----~-~----------- 108 (273)
T 1ouv_A 72 N------YSNGCHLLGNLYYS-GQ-----------------GVSQNTNKA--LQYYSKACD-----L-K----------- 108 (273)
T ss_dssp T------CHHHHHHHHHHHHH-TS-----------------SSCCCHHHH--HHHHHHHHH-----T-T-----------
T ss_pred C------CHHHHHHHHHHHhC-CC-----------------CcccCHHHH--HHHHHHHHH-----c-C-----------
Confidence 2 11223333333322 00 001123333 333334333 1 1
Q ss_pred chhHHHHHHHHHHHH----hhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHH----cCC
Q 013867 218 CTGSAALSYGEYLHA----TRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAH----MGN 289 (435)
Q Consensus 218 ~~~~~a~~la~~~~~----~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~----qG~ 289 (435)
...+..++|.+|.. +|++++|+.+|++|++. + + ..+..+||.+|.. +|+
T Consensus 109 -~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-----~---~--------------~~a~~~lg~~~~~~~~~~~~ 165 (273)
T 1ouv_A 109 -YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-----N---D--------------GDGCTILGSLYDAGRGTPKD 165 (273)
T ss_dssp -CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-----T---C--------------HHHHHHHHHHHHHTSSSCCC
T ss_pred -CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-----C---c--------------HHHHHHHHHHHHcCCCCCCC
Confidence 23567788999999 99999999999999975 1 0 1356899999999 999
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHH----hhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhh
Q 013867 290 FGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRN----KAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETK 365 (435)
Q Consensus 290 y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~----qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~ 365 (435)
+++|..+|++|+++ ++ ..++.+||.+|.. ++++++| ...|++++++- | ...
T Consensus 166 ~~~A~~~~~~a~~~-------~~---~~a~~~lg~~~~~g~~~~~~~~~A------~~~~~~a~~~~-------~--~~a 220 (273)
T 1ouv_A 166 LKKALASYDKACDL-------KD---SPGCFNAGNMYHHGEGATKNFKEA------LARYSKACELE-------N--GGG 220 (273)
T ss_dssp HHHHHHHHHHHHHT-------TC---HHHHHHHHHHHHHTCSSCCCHHHH------HHHHHHHHHTT-------C--HHH
T ss_pred HHHHHHHHHHHHHC-------CC---HHHHHHHHHHHHcCCCCCccHHHH------HHHHHHHHhCC-------C--HHH
Confidence 99999999999975 23 4678999999999 9998776 89999999862 1 346
Q ss_pred hccHHHHHHH----hcCHHHHhhHhhh
Q 013867 366 VDRTDIVALA----RGGYAEALSVQQN 388 (435)
Q Consensus 366 l~nla~~~~a----~G~yaeal~~~~~ 388 (435)
..+++.++.. .|++++|+..+.+
T Consensus 221 ~~~l~~~~~~g~~~~~~~~~A~~~~~~ 247 (273)
T 1ouv_A 221 CFNLGAMQYNGEGVTRNEKQAIENFKK 247 (273)
T ss_dssp HHHHHHHHHTTSSSSCCSTTHHHHHHH
T ss_pred HHHHHHHHHcCCCcccCHHHHHHHHHH
Confidence 6789999988 8888877776633
No 65
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.68 E-value=8.6e-15 Score=149.00 Aligned_cols=231 Identities=7% Similarity=-0.065 Sum_probs=168.1
Q ss_pred ChHHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHH
Q 013867 58 SNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGN-YVEAIEKLQKVEN 136 (435)
Q Consensus 58 ~~~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGk-y~eA~~l~~ral~ 136 (435)
.|..+..+.+++..+. .+|+|++|+..|++++.+. |.-...++++|.+|..+|+ |++|+..|++++.
T Consensus 93 ~p~~~~a~~~lg~~~~----~~g~~~~Al~~~~~al~l~--------P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~ 160 (382)
T 2h6f_A 93 SDKFRDVYDYFRAVLQ----RDERSERAFKLTRDAIELN--------AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIE 160 (382)
T ss_dssp CHHHHHHHHHHHHHHH----HTCCCHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHHHH----HCCChHHHHHHHHHHHHhC--------ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHH
Confidence 4777888999998884 3689999999999999765 6678899999999999997 9999999999977
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccc
Q 013867 137 FKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEE 216 (435)
Q Consensus 137 i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~ 216 (435)
+..+.. .++.+++.++..+|. ++ +++..+.++|.. +
T Consensus 161 l~P~~~----~a~~~~g~~~~~~g~----------------------~~--eAl~~~~kal~l----------------d 196 (382)
T 2h6f_A 161 EQPKNY----QVWHHRRVLVEWLRD----------------------PS--QELEFIADILNQ----------------D 196 (382)
T ss_dssp HCTTCH----HHHHHHHHHHHHHTC----------------------CT--THHHHHHHHHHH----------------C
T ss_pred HCCCCH----HHHHHHHHHHHHccC----------------------HH--HHHHHHHHHHHh----------------C
Confidence 654432 123334444433333 33 233344454442 1
Q ss_pred cchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHH-cCCHHHH--
Q 013867 217 GCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAH-MGNFGDA-- 293 (435)
Q Consensus 217 ~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~-qG~y~eA-- 293 (435)
|....+..++|.++..+|+|++|+.+|+++|++ . |+ ...+++++|.+|.. .|++++|
T Consensus 197 P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l-----------~-------P~--~~~a~~~lg~~l~~l~~~~~eA~~ 256 (382)
T 2h6f_A 197 AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE-----------D-------VR--NNSVWNQRYFVISNTTGYNDRAVL 256 (382)
T ss_dssp TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH-----------C-------TT--CHHHHHHHHHHHHHTTCSCSHHHH
T ss_pred ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh-----------C-------CC--CHHHHHHHHHHHHHhcCcchHHHH
Confidence 445567788999999999999999999999999 1 11 12468999999999 5555888
Q ss_pred ---HHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhh--hhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhcc
Q 013867 294 ---EEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKA--MQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDR 368 (435)
Q Consensus 294 ---e~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG--~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~n 368 (435)
..+|++|+.+ .|+-..++++++.+|..+| ++++| ...++++ . ..|+....+.+
T Consensus 257 ~~el~~~~~Al~l--------~P~~~~a~~~l~~ll~~~g~~~~~~a------~~~~~~~-----~---~~p~~~~al~~ 314 (382)
T 2h6f_A 257 EREVQYTLEMIKL--------VPHNESAWNYLKGILQDRGLSKYPNL------LNQLLDL-----Q---PSHSSPYLIAF 314 (382)
T ss_dssp HHHHHHHHHHHHH--------STTCHHHHHHHHHHHTTTCGGGCHHH------HHHHHHH-----T---TTCCCHHHHHH
T ss_pred HHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHccCccchHHH------HHHHHHh-----c---cCCCCHHHHHH
Confidence 5899999986 4666779999999999988 45544 5555443 2 23444456777
Q ss_pred HHHHHHHhc--------C-HHHHhhHh
Q 013867 369 TDIVALARG--------G-YAEALSVQ 386 (435)
Q Consensus 369 la~~~~a~G--------~-yaeal~~~ 386 (435)
++.++..+| + +++|+.++
T Consensus 315 La~~~~~~~~~~~~~~~~~~~~A~~~~ 341 (382)
T 2h6f_A 315 LVDIYEDMLENQCDNKEDILNKALELC 341 (382)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccccchHHHHHHHHHHH
Confidence 888888875 2 46666665
No 66
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.66 E-value=8.8e-15 Score=145.62 Aligned_cols=226 Identities=9% Similarity=0.093 Sum_probs=157.7
Q ss_pred ChhcHHHHHHHHHHHHhccCcCCC---------CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHH
Q 013867 78 SDESYSQGMLVLEQCLSTQPSDGQ---------LAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAA 148 (435)
Q Consensus 78 s~G~Y~eA~~~~eqaL~i~~~~lG---------~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaa 148 (435)
.+|+|++|+..|+++++..+.... ...++...++.+||.+|.++|+|++|++.|++++.+....-.....
T Consensus 16 ~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~- 94 (434)
T 4b4t_Q 16 NEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTV- 94 (434)
T ss_dssp HHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHH-
T ss_pred HCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHH-
Confidence 368999999999999998776322 2245567789999999999999999999999997766443111100
Q ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHH
Q 013867 149 MEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGE 228 (435)
Q Consensus 149 le~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~ 228 (435)
......+..+.. ....++++.. ....++.... ..+.. .....+..++|.
T Consensus 95 ------------------~~~~~~l~~~~~-~~~~~~~a~~--~~~~~~~~~~-~~~~~---------~~~~~~~~~la~ 143 (434)
T 4b4t_Q 95 ------------------KVLKTLIEKFEQ-VPDSLDDQIF--VCEKSIEFAK-REKRV---------FLKHSLSIKLAT 143 (434)
T ss_dssp ------------------HHHHHHHHHHCS-CCSCHHHHHH--HHHHHHHHHH-HSSCC---------SSHHHHHHHHHH
T ss_pred ------------------HHHHHHHHHHHh-CCCCHHHHHH--HHHHHHHHHH-HhCcc---------HHHHHHHHHHHH
Confidence 111111211111 1122443333 2333333211 11111 223456778999
Q ss_pred HHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhh
Q 013867 229 YLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELF 308 (435)
Q Consensus 229 ~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~l 308 (435)
+|..+|+|++|.+++++++.+. .+..++ +. .+..+.++|.+|..+|+|++|..+|++++.+.....
T Consensus 144 ~~~~~g~~~~A~~~l~~~~~~~---~~~~~~---------~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~ 209 (434)
T 4b4t_Q 144 LHYQKKQYKDSLALINDLLREF---KKLDDK---------PS--LVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIY 209 (434)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHH---TTSSCS---------TH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHccChHHHHHHHHHHHHHH---Hhcccc---------hh--HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCC
Confidence 9999999999999999999984 321111 11 345788999999999999999999999999987753
Q ss_pred CCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCC
Q 013867 309 GSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPP 356 (435)
Q Consensus 309 G~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~ 356 (435)
..+...+..+.++|.+|..+|+|++| ...|.++++++...+
T Consensus 210 -~~~~~~~~~~~~~g~~~~~~~~y~~A------~~~~~~a~~~~~~~~ 250 (434)
T 4b4t_Q 210 -CPTQTVAELDLMSGILHCEDKDYKTA------FSYFFESFESYHNLT 250 (434)
T ss_dssp -CCHHHHHHHHHHHHHHTTSSSCHHHH------HHHHHHHHHHHHHTT
T ss_pred -CchHHHHHHHHHHHHHHHHHHhHHHH------HHHHHHHHHHhhhhh
Confidence 44566799999999999999998776 788999999986543
No 67
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.64 E-value=6.7e-14 Score=124.96 Aligned_cols=215 Identities=13% Similarity=0.060 Sum_probs=151.1
Q ss_pred CChHHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013867 57 NSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVEN 136 (435)
Q Consensus 57 ~~~~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~ 136 (435)
+.|..+..+..+|..+.+ .|+|++|+.+|++++.+. |....++..+|.+|..+|+|++|++.|++++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 70 (225)
T 2vq2_A 3 KANQVSNIKTQLAMEYMR----GQDYRQATASIEDALKSD--------PKNELAWLVRAEIYQYLKVNDKAQESFRQALS 70 (225)
T ss_dssp -CCHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHhC--------ccchHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 457778888888988853 589999999999999764 34467899999999999999999999999866
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhc-CCCchhchhhHHHHHHHHHHHHHHhcCCCccccccc
Q 013867 137 FKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKH-KPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEE 215 (435)
Q Consensus 137 i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~-~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~ 215 (435)
+..... .++.. ...++... + .++++... ..+++. .+..
T Consensus 71 ~~~~~~----~~~~~--------------------l~~~~~~~~~--~~~~A~~~--~~~~~~------~~~~------- 109 (225)
T 2vq2_A 71 IKPDSA----EINNN--------------------YGWFLCGRLN--RPAESMAY--FDKALA------DPTY------- 109 (225)
T ss_dssp HCTTCH----HHHHH--------------------HHHHHHTTTC--CHHHHHHH--HHHHHT------STTC-------
T ss_pred hCCCCh----HHHHH--------------------HHHHHHHhcC--cHHHHHHH--HHHHHc------CcCC-------
Confidence 533221 11222 22333332 2 13333222 222221 1111
Q ss_pred ccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHH
Q 013867 216 EGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEE 295 (435)
Q Consensus 216 ~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~ 295 (435)
+....+..++|.++..+|+|++|+.+|++++++. . . ...++.++|.+|..+|+|++|..
T Consensus 110 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~------~-----------~~~~~~~la~~~~~~~~~~~A~~ 168 (225)
T 2vq2_A 110 -PTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ---P------Q-----------FPPAFKELARTKMLAGQLGDADY 168 (225)
T ss_dssp -SCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---T------T-----------CHHHHHHHHHHHHHHTCHHHHHH
T ss_pred -cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---C------C-----------CchHHHHHHHHHHHcCCHHHHHH
Confidence 3344567788999999999999999999999871 1 1 01357899999999999999999
Q ss_pred HHHHHHHHHHHhhCC-CChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchh
Q 013867 296 ILTRTLTKTEELFGS-HHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVE 363 (435)
Q Consensus 296 l~~rAL~I~e~~lG~-~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a 363 (435)
+|++++.+. | +++. .+..++.+|...|++++| ..++++++.+. |+++.+.
T Consensus 169 ~~~~~~~~~-----~~~~~~---~~~~~~~~~~~~~~~~~a------~~~~~~~~~~~----p~~~~~~ 219 (225)
T 2vq2_A 169 YFKKYQSRV-----EVLQAD---DLLLGWKIAKALGNAQAA------YEYEAQLQANF----PYSEELQ 219 (225)
T ss_dssp HHHHHHHHH-----CSCCHH---HHHHHHHHHHHTTCHHHH------HHHHHHHHHHC----TTCHHHH
T ss_pred HHHHHHHhC-----CCCCHH---HHHHHHHHHHhcCcHHHH------HHHHHHHHHhC----CCCHHHH
Confidence 999999863 3 4444 478889999999998766 66677666553 5566544
No 68
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.63 E-value=2.1e-14 Score=120.68 Aligned_cols=159 Identities=16% Similarity=0.211 Sum_probs=125.8
Q ss_pred CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCC
Q 013867 103 AESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPE 182 (435)
Q Consensus 103 ~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~ 182 (435)
+.+..+.++.++|.+|..+|+|++|++.|++++.+.++. +..
T Consensus 4 d~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~------------------~~~-------------------- 45 (164)
T 3ro3_A 4 SRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF------------------GDK-------------------- 45 (164)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH------------------TCH--------------------
T ss_pred cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh------------------CCc--------------------
Confidence 456789999999999999999999999999985543211 100
Q ss_pred chhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCc
Q 013867 183 NYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTL 262 (435)
Q Consensus 183 ~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l 262 (435)
. . ...+..++|.+|..+|+|++|+.+|++++++..+...
T Consensus 46 -~-------~--------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~------- 84 (164)
T 3ro3_A 46 -A-------A--------------------------ERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD------- 84 (164)
T ss_dssp -H-------H--------------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-------
T ss_pred -h-------H--------------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC-------
Confidence 0 0 0123345677888999999999999999999643211
Q ss_pred ccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHH
Q 013867 263 GSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQE 342 (435)
Q Consensus 263 ~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae 342 (435)
+ .....++.++|.+|..+|+|++|+.+|++++.+.++. .+++..+.++.++|.+|..+|++++| .
T Consensus 85 ------~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A------~ 149 (164)
T 3ro3_A 85 ------R-AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL--KDRIGEGRACWSLGNAYTALGNHDQA------M 149 (164)
T ss_dssp ------H-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHTCHHHH------H
T ss_pred ------c-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHc--cchHhHHHHHHHHHHHHHHccCHHHH------H
Confidence 1 1133567899999999999999999999999998775 35788999999999999999998776 8
Q ss_pred HHHHHHHHHhcCC
Q 013867 343 GLYRRALEFLKAP 355 (435)
Q Consensus 343 ~Ly~rAL~I~k~~ 355 (435)
..|++++++.+..
T Consensus 150 ~~~~~a~~~~~~~ 162 (164)
T 3ro3_A 150 HFAEKHLEISREV 162 (164)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998653
No 69
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.63 E-value=2.9e-14 Score=125.95 Aligned_cols=168 Identities=13% Similarity=0.068 Sum_probs=121.1
Q ss_pred HHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhh
Q 013867 61 VVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNS 140 (435)
Q Consensus 61 vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~ 140 (435)
.+....++|..+. .+|+|++|+..|++++++. |.-..++.+||.+|..+|++++|++.++++......
T Consensus 4 ~~~iy~~lG~~~~----~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~ 71 (184)
T 3vtx_A 4 TTTIYMDIGDKKR----TKGDFDGAIRAYKKVLKAD--------PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT 71 (184)
T ss_dssp CHHHHHHHHHHHH----HHTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch
Confidence 4566788898883 3799999999999999774 455778999999999999999999999998554322
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchh
Q 013867 141 ILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTG 220 (435)
Q Consensus 141 ~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~ 220 (435)
... ............+ .++++.. ...+++. +. |...
T Consensus 72 ~~~------------------------~~~~~~~~~~~~~--~~~~a~~--~~~~a~~-----~~-----------~~~~ 107 (184)
T 3vtx_A 72 SAE------------------------AYYILGSANFMID--EKQAAID--ALQRAIA-----LN-----------TVYA 107 (184)
T ss_dssp CHH------------------------HHHHHHHHHHHTT--CHHHHHH--HHHHHHH-----HC-----------TTCH
T ss_pred hHH------------------------HHHHHHHHHHHcC--CHHHHHH--HHHHHHH-----hC-----------ccch
Confidence 211 1111222222222 1332322 2233332 11 3344
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013867 221 SAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRT 300 (435)
Q Consensus 221 ~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rA 300 (435)
.+...+|.+|..+|+|++|+..|++++++. + . ...++++||.+|..+|+|++|...|++|
T Consensus 108 ~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~--------p-~-----------~~~~~~~lg~~~~~~g~~~~A~~~~~~a 167 (184)
T 3vtx_A 108 DAYYKLGLVYDSMGEHDKAIEAYEKTISIK--------P-G-----------FIRAYQSIGLAYEGKGLRDEAVKYFKKA 167 (184)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------T-T-----------CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchhHHHHHHHHHHhc--------c-h-----------hhhHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 677788999999999999999999999981 1 1 1246789999999999999999999999
Q ss_pred HHHH
Q 013867 301 LTKT 304 (435)
Q Consensus 301 L~I~ 304 (435)
|++.
T Consensus 168 l~~~ 171 (184)
T 3vtx_A 168 LEKE 171 (184)
T ss_dssp HHTT
T ss_pred HhCC
Confidence 9873
No 70
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.62 E-value=3.7e-14 Score=137.81 Aligned_cols=209 Identities=14% Similarity=0.102 Sum_probs=134.1
Q ss_pred HHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhh
Q 013867 61 VVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNS 140 (435)
Q Consensus 61 vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~ 140 (435)
....+..+|..+. ..|++++|+..|++.+... .+|+-...+..+|.+|..+|+|++|++.|++. .
T Consensus 64 ~~~a~~~la~~~~----~~~~~~~A~~~l~~ll~~~------~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~~-----~ 128 (291)
T 3mkr_A 64 ELQAVRMFAEYLA----SHSRRDAIVAELDREMSRS------VDVTNTTFLLMAASIYFYDQNPDAALRTLHQG-----D 128 (291)
T ss_dssp HHHHHHHHHHHHH----CSTTHHHHHHHHHHHHHSC------CCCSCHHHHHHHHHHHHHTTCHHHHHHHHTTC-----C
T ss_pred hHHHHHHHHHHHc----CCCcHHHHHHHHHHHHhcc------cCCCCHHHHHHHHHHHHHCCCHHHHHHHHhCC-----C
Confidence 4455666666663 3567888888888877432 13555666788888888888888888877761 1
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchh
Q 013867 141 ILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTG 220 (435)
Q Consensus 141 ~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~ 220 (435)
. ..++..++.++..+|..+. |...+ .+++. ..++ ....
T Consensus 129 ~----~~~~~~l~~~~~~~g~~~~----------------------A~~~l--~~~~~-----~~p~---------~~~~ 166 (291)
T 3mkr_A 129 S----LECMAMTVQILLKLDRLDL----------------------ARKEL--KKMQD-----QDED---------ATLT 166 (291)
T ss_dssp S----HHHHHHHHHHHHHTTCHHH----------------------HHHHH--HHHHH-----HCTT---------CHHH
T ss_pred C----HHHHHHHHHHHHHCCCHHH----------------------HHHHH--HHHHh-----hCcC---------cHHH
Confidence 1 1122223333333443332 22222 22221 1111 0011
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013867 221 SAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRT 300 (435)
Q Consensus 221 ~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rA 300 (435)
..+..+..++..+|+|++|..+|+++++.. + . ....++++|.+|..+|+|++|+..|+++
T Consensus 167 ~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~--------p-~-----------~~~~~~~la~~~~~~g~~~eA~~~l~~a 226 (291)
T 3mkr_A 167 QLATAWVSLAAGGEKLQDAYYIFQEMADKC--------S-P-----------TLLLLNGQAACHMAQGRWEAAEGVLQEA 226 (291)
T ss_dssp HHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--------C-C-----------CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCchHHHHHHHHHHHHHHhC--------C-C-----------cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 223334445566799999999999999871 1 1 1246789999999999999999999999
Q ss_pred HHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchh
Q 013867 301 LTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVE 363 (435)
Q Consensus 301 L~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a 363 (435)
|.+. |++| .+++|+|.++..+|+++++ ++.++++++++. |+||.+.
T Consensus 227 l~~~-----p~~~---~~l~~l~~~~~~~g~~~ea-----a~~~~~~~~~~~----P~~~~~~ 272 (291)
T 3mkr_A 227 LDKD-----SGHP---ETLINLVVLSQHLGKPPEV-----TNRYLSQLKDAH----RSHPFIK 272 (291)
T ss_dssp HHHC-----TTCH---HHHHHHHHHHHHTTCCHHH-----HHHHHHHHHHHC----TTCHHHH
T ss_pred HHhC-----CCCH---HHHHHHHHHHHHcCCCHHH-----HHHHHHHHHHhC----CCChHHH
Confidence 9863 4444 4589999999999998653 378888888775 7777644
No 71
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.62 E-value=1.2e-14 Score=134.87 Aligned_cols=210 Identities=10% Similarity=0.059 Sum_probs=151.8
Q ss_pred HHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHH
Q 013867 64 QMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILG 143 (435)
Q Consensus 64 ~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~ 143 (435)
.+.++|..+.+ .|+|++|+..|++++... ++....+.++.++|.+|..+|+|++|++.|++++++.+...
T Consensus 39 ~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~-----~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~- 108 (272)
T 3u4t_A 39 IYNRRAVCYYE----LAKYDLAQKDIETYFSKV-----NATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRL- 108 (272)
T ss_dssp THHHHHHHHHH----TTCHHHHHHHHHHHHTTS-----CTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT-
T ss_pred HHHHHHHHHHH----HhhHHHHHHHHHHHHhcc-----CchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccH-
Confidence 45667777743 689999999999999722 23334588899999999999999999999999976543321
Q ss_pred HHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHH
Q 013867 144 VRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAA 223 (435)
Q Consensus 144 i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a 223 (435)
.++..++..+..+|.+ ++|.. ...+++.. .|....+.
T Consensus 109 ---~~~~~l~~~~~~~~~~----------------------~~A~~--~~~~al~~----------------~~~~~~~~ 145 (272)
T 3u4t_A 109 ---DMYGQIGSYFYNKGNF----------------------PLAIQ--YMEKQIRP----------------TTTDPKVF 145 (272)
T ss_dssp ---HHHHHHHHHHHHTTCH----------------------HHHHH--HHGGGCCS----------------SCCCHHHH
T ss_pred ---HHHHHHHHHHHHccCH----------------------HHHHH--HHHHHhhc----------------CCCcHHHH
Confidence 1233333334333333 22211 12221110 13445667
Q ss_pred HHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHH
Q 013867 224 LSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGN---FGDAEEILTRT 300 (435)
Q Consensus 224 ~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~---y~eAe~l~~rA 300 (435)
.++|.....+++|++|+..|++++++. . . ...++.++|.++..+|+ +++|...|+++
T Consensus 146 ~~l~~~~~~~~~~~~A~~~~~~a~~~~---p------~-----------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 205 (272)
T 3u4t_A 146 YELGQAYYYNKEYVKADSSFVKVLELK---P------N-----------IYIGYLWRARANAAQDPDTKQGLAKPYYEKL 205 (272)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS---T------T-----------CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC---c------c-----------chHHHHHHHHHHHHcCcchhhHHHHHHHHHH
Confidence 778844455669999999999999881 1 1 12456789999999999 99999999999
Q ss_pred HHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 301 LTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 301 L~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
+.+.++.-.++.+....++.+||.+|..+|++++| ...|++++++.
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A------~~~~~~al~~~ 251 (272)
T 3u4t_A 206 IEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA------DAAWKNILALD 251 (272)
T ss_dssp HHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHC
T ss_pred HHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH------HHHHHHHHhcC
Confidence 99998766655455789999999999999998877 89999999986
No 72
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.62 E-value=9e-15 Score=140.47 Aligned_cols=138 Identities=11% Similarity=0.005 Sum_probs=111.0
Q ss_pred HHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 013867 226 YGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTE 305 (435)
Q Consensus 226 la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e 305 (435)
++.++..+|+|++|+.+|++|+++. .. ...... ...+++++|.+|..+|+|++|+.+|++|+.+.+
T Consensus 121 ~~~~~~~~~~~~~A~~~~~~al~~~---~~--~~~~~~---------~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~ 186 (293)
T 2qfc_A 121 VAAYVLKKVDYEYCILELKKLLNQQ---LT--GIDVYQ---------NLYIENAIANIYAENGYLKKGIDLFEQILKQLE 186 (293)
T ss_dssp HHHHHHTSSCHHHHHHHHHHHHTTC---CC--SSCTTH---------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHH---hc--CCchHH---------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 4566788999999999999999883 21 111111 235789999999999999999999999999998
Q ss_pred HhhCCCChhHH-HHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHHH-h
Q 013867 306 ELFGSHHPKVG-VVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEA-L 383 (435)
Q Consensus 306 ~~lG~~HP~va-~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yaea-l 383 (435)
+..+ .+... .+++|+|.+|..+|+|++| ...|++|+++.+. ..++...+..+.|++.++..+|+|++| .
T Consensus 187 ~~~~--~~~~~~~~~~nlg~~y~~~~~y~~A------l~~~~kal~~~~~-~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~ 257 (293)
T 2qfc_A 187 ALHD--NEEFDVKVRYNHAKALYLDSRYEES------LYQVNKAIEISCR-INSMALIGQLYYQRGECLRKLEYEEAEIE 257 (293)
T ss_dssp HSCC--CHHHHHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHHHH-TTBCSSHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred hcCc--cccchHHHHHhHHHHHHHHhhHHHH------HHHHHHHHHHHHh-cCcHHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence 7653 34433 8999999999999998877 8999999999853 334455788889999999999999999 5
Q ss_pred hHh
Q 013867 384 SVQ 386 (435)
Q Consensus 384 ~~~ 386 (435)
..+
T Consensus 258 ~~~ 260 (293)
T 2qfc_A 258 DAY 260 (293)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 73
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.61 E-value=1.5e-13 Score=122.72 Aligned_cols=202 Identities=15% Similarity=0.101 Sum_probs=142.2
Q ss_pred CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCC
Q 013867 103 AESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPE 182 (435)
Q Consensus 103 ~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~ 182 (435)
+.|..+..+..+|.+|..+|+|++|++.|++++.+..... .++..++..+..+|.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~--------------------- 57 (225)
T 2vq2_A 3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNE----LAWLVRAEIYQYLKV--------------------- 57 (225)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTC---------------------
T ss_pred CCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccch----HHHHHHHHHHHHcCC---------------------
Confidence 4688899999999999999999999999999866543221 122222233333332
Q ss_pred chhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHh-hchHHHHHHHHHHHHHHHHhcccCCCCC
Q 013867 183 NYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHAT-RNFLLAKKFYQKVIEVLAEQKDFSDMNT 261 (435)
Q Consensus 183 ~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~-G~y~eAe~ly~rAL~I~~~~~~~~~~~~ 261 (435)
++++.. ...+++.. . |....+...+|.+|..+ |+|++|+.+|+++++. +..
T Consensus 58 -~~~A~~--~~~~a~~~-----~-----------~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~-------~~~-- 109 (225)
T 2vq2_A 58 -NDKAQE--SFRQALSI-----K-----------PDSAEINNNYGWFLCGRLNRPAESMAYFDKALAD-------PTY-- 109 (225)
T ss_dssp -HHHHHH--HHHHHHHH-----C-----------TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTS-------TTC--
T ss_pred -hHHHHH--HHHHHHHh-----C-----------CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcC-------cCC--
Confidence 332222 23333321 1 22345667789999999 9999999999999861 111
Q ss_pred cccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHH
Q 013867 262 LGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQ 341 (435)
Q Consensus 262 l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~A 341 (435)
|+ ....+.++|.+|..+|++++|+.+|++++.+ .|+...++.++|.+|..+|++++|
T Consensus 110 -------~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A------ 166 (225)
T 2vq2_A 110 -------PT--PYIANLNKGICSAKQGQFGLAEAYLKRSLAA--------QPQFPPAFKELARTKMLAGQLGDA------ 166 (225)
T ss_dssp -------SC--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHTCHHHH------
T ss_pred -------cc--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCchHHHHHHHHHHHcCCHHHH------
Confidence 11 2246789999999999999999999999986 344456789999999999998776
Q ss_pred HHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHHHhhHh
Q 013867 342 EGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQ 386 (435)
Q Consensus 342 e~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~ 386 (435)
...|++++++.. .+++ ..+..++.++...|+++++....
T Consensus 167 ~~~~~~~~~~~~---~~~~---~~~~~~~~~~~~~~~~~~a~~~~ 205 (225)
T 2vq2_A 167 DYYFKKYQSRVE---VLQA---DDLLLGWKIAKALGNAQAAYEYE 205 (225)
T ss_dssp HHHHHHHHHHHC---SCCH---HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhCC---CCCH---HHHHHHHHHHHhcCcHHHHHHHH
Confidence 899999998762 0233 23456777778888888776654
No 74
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.61 E-value=1.7e-13 Score=126.65 Aligned_cols=224 Identities=13% Similarity=0.003 Sum_probs=136.2
Q ss_pred CChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 013867 77 KSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLY 156 (435)
Q Consensus 77 ~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~ 156 (435)
..+|+|++|+..|++++.... .+.|..+.++.++|.+|..+|+|++|+..|++++.+.... ..++..++..+
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~ 87 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRA----LTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDM----PEVFNYLGIYL 87 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSC----CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHH
T ss_pred CccchHHHHHHHHHHHHhccc----ccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCc----HHHHHHHHHHH
Confidence 467899999999999998632 3467899999999999999999999999999997764432 22344555555
Q ss_pred HhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhch
Q 013867 157 LQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNF 236 (435)
Q Consensus 157 ~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y 236 (435)
..+|.+..|....+.++.+. |....+...+|.+|..+|+|
T Consensus 88 ~~~~~~~~A~~~~~~al~~~----------------------------------------~~~~~~~~~la~~~~~~g~~ 127 (275)
T 1xnf_A 88 TQAGNFDAAYEAFDSVLELD----------------------------------------PTYNYAHLNRGIALYYGGRD 127 (275)
T ss_dssp HHTTCHHHHHHHHHHHHHHC----------------------------------------TTCTHHHHHHHHHHHHTTCH
T ss_pred HHccCHHHHHHHHHHHHhcC----------------------------------------ccccHHHHHHHHHHHHhccH
Confidence 55665554444433333221 11123334444445555555
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHH------------------------------HHHHHHHHHHH
Q 013867 237 LLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALA------------------------------ATFALGQLEAH 286 (435)
Q Consensus 237 ~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~------------------------------~l~nLa~ly~~ 286 (435)
++|..+|++++++. . + . .... ...+++.++..
T Consensus 128 ~~A~~~~~~a~~~~---~---~--~----------~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (275)
T 1xnf_A 128 KLAQDDLLAFYQDD---P---N--D----------PFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLG 189 (275)
T ss_dssp HHHHHHHHHHHHHC---T---T--C----------HHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhC---C---C--C----------hHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 55555555555440 0 0 0 0000 01234444455
Q ss_pred cCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhh
Q 013867 287 MGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKV 366 (435)
Q Consensus 287 qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l 366 (435)
++++++|...+++++..... ..|....++.++|.+|..+|++++| ...|++++++. |++..
T Consensus 190 ~~~~~~a~~~~~~~~~~~~~----~~~~~~~~~~~la~~~~~~g~~~~A------~~~~~~al~~~----p~~~~----- 250 (275)
T 1xnf_A 190 NISEQTLMERLKADATDNTS----LAEHLSETNFYLGKYYLSLGDLDSA------TALFKLAVANN----VHNFV----- 250 (275)
T ss_dssp SSCHHHHHHHHHHHCCSHHH----HHHHHHHHHHHHHHHHHHTTCHHHH------HHHHHHHHTTC----CTTCH-----
T ss_pred hcCHHHHHHHHHHHhccccc----ccccccHHHHHHHHHHHHcCCHHHH------HHHHHHHHhCC----chhHH-----
Confidence 55555555555555444332 2345578999999999999998776 88999998764 22221
Q ss_pred ccHHHHHHHhcCHHHHhhHh
Q 013867 367 DRTDIVALARGGYAEALSVQ 386 (435)
Q Consensus 367 ~nla~~~~a~G~yaeal~~~ 386 (435)
....++...|+|.+|+..+
T Consensus 251 -~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 -EHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp -HHHHHHHHHHHHHHC----
T ss_pred -HHHHHHHHHHHHHhhHHHH
Confidence 2356677888999887664
No 75
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.61 E-value=2.2e-14 Score=148.74 Aligned_cols=205 Identities=10% Similarity=0.055 Sum_probs=148.7
Q ss_pred ChHHHHHHHHHHHHhhhccCChhcH-HHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013867 58 SNPVVLQMINYALSHARSQKSDESY-SQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVEN 136 (435)
Q Consensus 58 ~~~vA~~m~~~a~~~~r~~~s~G~Y-~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~ 136 (435)
.|..+..+..+|..+. ..|+| ++|+.+|++++++. |..+..+++||.+|..+|+|++|++.|++++.
T Consensus 98 ~~~~a~~~~~lg~~~~----~~g~~~~~A~~~~~~al~~~--------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 165 (474)
T 4abn_A 98 AQVEAQALMLKGKALN----VTPDYSPEAEVLLSKAVKLE--------PELVEAWNQLGEVYWKKGDVTSAHTCFSGALT 165 (474)
T ss_dssp CCCCHHHHHHHHHHHT----SSSSCCHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CchhHHHHHHHHHHHH----hccccHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3455667788888884 36899 99999999999775 55678899999999999999999999999987
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccc
Q 013867 137 FKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEE 216 (435)
Q Consensus 137 i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~ 216 (435)
+.... .++.+++.++..+....... ..+ .+++| +....+++.. .
T Consensus 166 ~~p~~-----~~~~~lg~~~~~~~~~~~~~-----------~~g--~~~~A--~~~~~~al~~----------------~ 209 (474)
T 4abn_A 166 HCKNK-----VSLQNLSMVLRQLQTDSGDE-----------HSR--HVMDS--VRQAKLAVQM----------------D 209 (474)
T ss_dssp TCCCH-----HHHHHHHHHHTTCCCSCHHH-----------HHH--HHHHH--HHHHHHHHHH----------------C
T ss_pred hCCCH-----HHHHHHHHHHHHhccCChhh-----------hhh--hHHHH--HHHHHHHHHh----------------C
Confidence 65431 23444555554431110000 001 13333 2233333331 1
Q ss_pred cchhHHHHHHHHHHHHh--------hchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcC
Q 013867 217 GCTGSAALSYGEYLHAT--------RNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMG 288 (435)
Q Consensus 217 ~~~~~~a~~la~~~~~~--------G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG 288 (435)
|....+..++|.+|..+ |+|++|+..|++|+++. . . . ++ ....+++||.+|..+|
T Consensus 210 p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~---p------~-~-----~~--~~~~~~~lg~~~~~~g 272 (474)
T 4abn_A 210 VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVD---R------K-A-----SS--NPDLHLNRATLHKYEE 272 (474)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC---G------G-G-----GG--CHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhC---C------C-c-----cc--CHHHHHHHHHHHHHcC
Confidence 34456778899999998 99999999999999981 1 0 0 01 1246789999999999
Q ss_pred CHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhh
Q 013867 289 NFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHS 335 (435)
Q Consensus 289 ~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A 335 (435)
+|++|+..|++|+.+ .|+...++.+++.++...|++++|
T Consensus 273 ~~~~A~~~~~~al~l--------~p~~~~a~~~l~~~~~~lg~~~eA 311 (474)
T 4abn_A 273 SYGEALEGFSQAAAL--------DPAWPEPQQREQQLLEFLSRLTSL 311 (474)
T ss_dssp CHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999987 455667899999999999998877
No 76
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.60 E-value=2.7e-14 Score=145.26 Aligned_cols=203 Identities=8% Similarity=0.006 Sum_probs=150.7
Q ss_pred CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCC
Q 013867 103 AESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPE 182 (435)
Q Consensus 103 ~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~ 182 (435)
-.|.-+..++++|.+|..+|+|++|+..|++++.+..... .++.+++.++..+|.
T Consensus 92 ~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~----~a~~~~g~~l~~~g~--------------------- 146 (382)
T 2h6f_A 92 YSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANY----TVWHFRRVLLKSLQK--------------------- 146 (382)
T ss_dssp CCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTC---------------------
T ss_pred CChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCH----HHHHHHHHHHHHccc---------------------
Confidence 3578899999999999999999999999999976654331 123333333333332
Q ss_pred chhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCc
Q 013867 183 NYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTL 262 (435)
Q Consensus 183 ~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l 262 (435)
.++ +++....++|.. +|....+..++|.+|..+|+|++|+.+|++||++ .
T Consensus 147 d~~--eAl~~~~~al~l----------------~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~l-----------d- 196 (382)
T 2h6f_A 147 DLH--EEMNYITAIIEE----------------QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQ-----------D- 196 (382)
T ss_dssp CHH--HHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH-----------C-
T ss_pred CHH--HHHHHHHHHHHH----------------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----------C-
Confidence 133 333344444442 1445677888999999999999999999999998 1
Q ss_pred ccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHH-hhhhhhhhhhHHH
Q 013867 263 GSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRN-KAMQEHSSALLIQ 341 (435)
Q Consensus 263 ~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~-qG~~e~A~~~~~A 341 (435)
|+ ...+++++|.+|..+|+|++|...|+++|.+ +|+-..+++++|.+|.. +|.+++|. +..+
T Consensus 197 ------P~--~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--------~P~~~~a~~~lg~~l~~l~~~~~eA~-~~~e 259 (382)
T 2h6f_A 197 ------AK--NYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--------DVRNNSVWNQRYFVISNTTGYNDRAV-LERE 259 (382)
T ss_dssp ------TT--CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCSCSHHH-HHHH
T ss_pred ------cc--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhcCcchHHH-HHHH
Confidence 11 1246789999999999999999999999997 67778899999999999 55547762 3344
Q ss_pred HHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhc--CHHHHhh
Q 013867 342 EGLYRRALEFLKAPPLESEGVETKVDRTDIVALARG--GYAEALS 384 (435)
Q Consensus 342 e~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G--~yaeal~ 384 (435)
...|++||++- |+.....+|++.++..+| +|.+|+.
T Consensus 260 l~~~~~Al~l~-------P~~~~a~~~l~~ll~~~g~~~~~~a~~ 297 (382)
T 2h6f_A 260 VQYTLEMIKLV-------PHNESAWNYLKGILQDRGLSKYPNLLN 297 (382)
T ss_dssp HHHHHHHHHHS-------TTCHHHHHHHHHHHTTTCGGGCHHHHH
T ss_pred HHHHHHHHHHC-------CCCHHHHHHHHHHHHccCccchHHHHH
Confidence 68899999875 343457778888888888 5777764
No 77
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.60 E-value=6.6e-14 Score=128.68 Aligned_cols=200 Identities=15% Similarity=0.015 Sum_probs=141.5
Q ss_pred cchH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCC
Q 013867 104 ESWR-GISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPE 182 (435)
Q Consensus 104 Hp~~-A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~ 182 (435)
+|.. +..+..+|.+|..+|+|++|++.|++++.+.... ..++..++..+...|.
T Consensus 32 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~~~--------------------- 86 (252)
T 2ho1_A 32 GRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSS----ADAHAALAVVFQTEME--------------------- 86 (252)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTC---------------------
T ss_pred chHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCh----HHHHHHHHHHHHHcCC---------------------
Confidence 3444 8999999999999999999999999986653221 1112222222322222
Q ss_pred chhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCc
Q 013867 183 NYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTL 262 (435)
Q Consensus 183 ~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l 262 (435)
+++|.. ...+++.. . |....+...++.+|..+|+|++|+.+|++++.. + ..
T Consensus 87 -~~~A~~--~~~~a~~~-----~-----------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----~--~~--- 137 (252)
T 2ho1_A 87 -PKLADE--EYRKALAS-----D-----------SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQD-----T--LY--- 137 (252)
T ss_dssp -HHHHHH--HHHHHHHH-----C-----------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTC-----T--TC---
T ss_pred -HHHHHH--HHHHHHHH-----C-----------cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhC-----c--cC---
Confidence 333322 23333321 1 223456677899999999999999999999861 0 01
Q ss_pred ccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHH
Q 013867 263 GSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQE 342 (435)
Q Consensus 263 ~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae 342 (435)
|+ ....+.++|.+|..+|++++|+.+|++++.+ .|....++.++|.+|..+|++++| .
T Consensus 138 ------~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~g~~~~A------~ 195 (252)
T 2ho1_A 138 ------PE--RSRVFENLGLVSLQMKKPAQAKEYFEKSLRL--------NRNQPSVALEMADLLYKEREYVPA------R 195 (252)
T ss_dssp ------TT--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHTTCHHHH------H
T ss_pred ------cc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHcCCHHHH------H
Confidence 11 2246789999999999999999999999986 244467789999999999998776 8
Q ss_pred HHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHHHhhHh
Q 013867 343 GLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQ 386 (435)
Q Consensus 343 ~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~ 386 (435)
..|++++++. + +....+..++.++..+|++++|....
T Consensus 196 ~~~~~~~~~~----~---~~~~~~~~~~~~~~~~g~~~~A~~~~ 232 (252)
T 2ho1_A 196 QYYDLFAQGG----G---QNARSLLLGIRLAKVFEDRDTAASYG 232 (252)
T ss_dssp HHHHHHHTTS----C---CCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhC----c---CcHHHHHHHHHHHHHccCHHHHHHHH
Confidence 8899987743 2 22335667888899999999887765
No 78
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.60 E-value=2e-14 Score=130.55 Aligned_cols=198 Identities=13% Similarity=0.061 Sum_probs=124.6
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCch
Q 013867 105 SWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENY 184 (435)
Q Consensus 105 p~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~ 184 (435)
...+..++++|..+..+|+|++|+..|++++....... .++..+ +.++...+. +
T Consensus 20 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~----~~~~~l--------------------a~~~~~~~~--~ 73 (243)
T 2q7f_A 20 HMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDA----IPYINF--------------------ANLLSSVNE--L 73 (243)
T ss_dssp ----------------------CCTTHHHHHTTCTTCH----HHHHHH--------------------HHHHHHTTC--H
T ss_pred hhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccH----HHHHHH--------------------HHHHHHcCC--H
Confidence 46788899999999999999999999999866433221 112222 222222221 3
Q ss_pred hchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCccc
Q 013867 185 KTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGS 264 (435)
Q Consensus 185 ~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~ 264 (435)
+++.. ...+++.. . |....+...+|.+|..+|+|++|+.+|++++++. .. .
T Consensus 74 ~~A~~--~~~~~~~~-----~-----------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---~~-----~--- 124 (243)
T 2q7f_A 74 ERALA--FYDKALEL-----D-----------SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG---ME-----N--- 124 (243)
T ss_dssp HHHHH--HHHHHHHH-----C-----------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT---CC-----S---
T ss_pred HHHHH--HHHHHHHc-----C-----------CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---CC-----C---
Confidence 33322 23333321 1 2234567778999999999999999999999881 10 0
Q ss_pred ccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHH
Q 013867 265 CNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGL 344 (435)
Q Consensus 265 ~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~L 344 (435)
...+.++|.+|..+|+|++|+.+|++++.+ +|+...++.++|.+|..+|++++| +..
T Consensus 125 ---------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A------~~~ 181 (243)
T 2q7f_A 125 ---------GDLFYMLGTVLVKLEQPKLALPYLQRAVEL--------NENDTEARFQFGMCLANEGMLDEA------LSQ 181 (243)
T ss_dssp ---------HHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCCHHH------HHH
T ss_pred ---------HHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHcCCHHHH------HHH
Confidence 135679999999999999999999999986 445566899999999999998776 899
Q ss_pred HHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHHHhhHhh
Q 013867 345 YRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQQ 387 (435)
Q Consensus 345 y~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~~ 387 (435)
|++++++. |+....+.+++.++..+|++++|+..+.
T Consensus 182 ~~~~~~~~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~ 217 (243)
T 2q7f_A 182 FAAVTEQD-------PGHADAFYNAGVTYAYKENREKALEMLD 217 (243)
T ss_dssp HHHHHHHC-------TTCHHHHHHHHHHHHHTTCTTHHHHHHH
T ss_pred HHHHHHhC-------cccHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 99998874 2334467789999999999998887663
No 79
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.60 E-value=2.3e-14 Score=127.15 Aligned_cols=147 Identities=12% Similarity=0.064 Sum_probs=120.8
Q ss_pred hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013867 219 TGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILT 298 (435)
Q Consensus 219 ~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~ 298 (435)
...+...+|.+|..+|+|++|+.+|++++++.++.. + . + ....+++++|.+|..+|+|++|+++|+
T Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~---~--~-------~--~~~~~~~~l~~~~~~~g~~~~A~~~~~ 90 (203)
T 3gw4_A 25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSG---D--H-------T--AEHRALHQVGMVERMAGNWDAARRCFL 90 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC---C--H-------H--HHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcC---C--c-------H--HHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 345677789999999999999999999999964311 0 0 1 134578899999999999999999999
Q ss_pred HHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcC
Q 013867 299 RTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGG 378 (435)
Q Consensus 299 rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~ 378 (435)
+++.+.+ ..|.+++..+.+++++|.+|..+|++++| +..+++++++.+..+ +....+..+.+++.++..+|+
T Consensus 91 ~al~~~~-~~~~~~~~~~~~~~~lg~~~~~~g~~~~A------~~~~~~al~~~~~~~-~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 91 EERELLA-SLPEDPLAASANAYEVATVALHFGDLAGA------RQEYEKSLVYAQQAD-DQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHH-HSCCCHHHHHHHHHHHHHHHHHHTCHHHH------HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHH-HcCccHHHHHHHHHHHHHHHHHhCCHHHH------HHHHHHHHHHHHhcc-chHHHHHHHHHHHHHHHHCcC
Confidence 9999998 56666668999999999999999998776 899999999986432 222356678899999999999
Q ss_pred HHHHhhHhh
Q 013867 379 YAEALSVQQ 387 (435)
Q Consensus 379 yaeal~~~~ 387 (435)
|++|.....
T Consensus 163 ~~~A~~~~~ 171 (203)
T 3gw4_A 163 LLEAQQHWL 171 (203)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 998877663
No 80
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.60 E-value=6.1e-14 Score=134.64 Aligned_cols=141 Identities=12% Similarity=-0.005 Sum_probs=115.1
Q ss_pred HHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 013867 226 YGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTE 305 (435)
Q Consensus 226 la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e 305 (435)
++.++..+|+|++|+.+|++|+.+. .. ..... ..+.++++||.+|..+|+|++|+.+|++||.+.+
T Consensus 121 l~~~~~~~~~~~~Ai~~~~~al~~~---~~--~~~~~---------~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 186 (293)
T 3u3w_A 121 VAAYVLKKVDYEYCILELKKLLNQQ---LT--GIDVY---------QNLYIENAIANIYAENGYLKKGIDLFEQILKQLE 186 (293)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHTC---CC--CSCTT---------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcccCHHHHHHHHHHHHHHh---cc--cccHH---------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 4556778899999999999999972 21 11111 1345789999999999999999999999999987
Q ss_pred HhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcC-HHHHhh
Q 013867 306 ELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGG-YAEALS 384 (435)
Q Consensus 306 ~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~-yaeal~ 384 (435)
+. +.++|..+.+++|+|.+|..+|+|++| ...|++|+++.+.. .+++..+..+.|++.++..+|+ |++|+.
T Consensus 187 ~~-~~~~~~~~~~~~nlg~~y~~~~~y~~A------~~~~~~al~~~~~~-~~~~~~~~~~~~lg~~~~~~g~~~~~A~~ 258 (293)
T 3u3w_A 187 AL-HDNEEFDVKVRYNHAKALYLDSRYEES------LYQVNKAIEISCRI-NSMALIGQLYYQRGECLRKLEYEEAEIED 258 (293)
T ss_dssp HS-SCCHHHHHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHHHHT-TBCTTHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred hc-ccchhHHHHHHHHHHHHHHHHhHHHHH------HHHHHHHHHHHHHc-CcHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 75 448899999999999999999998877 89999999999643 3445678889999999999994 788877
Q ss_pred Hhhh
Q 013867 385 VQQN 388 (435)
Q Consensus 385 ~~~~ 388 (435)
.+.+
T Consensus 259 ~~~~ 262 (293)
T 3u3w_A 259 AYKK 262 (293)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6643
No 81
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.59 E-value=1.7e-13 Score=125.34 Aligned_cols=159 Identities=19% Similarity=0.126 Sum_probs=114.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhch
Q 013867 109 ISLLAMSTLLYESGNYVEAIEKLQKVENFKN-SILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTY 187 (435)
Q Consensus 109 ~~l~nLa~ly~~qGky~eA~~l~~ral~i~e-~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~ea 187 (435)
..+.++|..|..+|+|++|++.|++++.+.+ ... .++.+ ....+...+. |++|
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~----~~~~~--------------------~~~~~~~~~~--~~~A 61 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDS----VTAYN--------------------CGVCADNIKK--YKEA 61 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCH----HHHHH--------------------HHHHHHHTTC--HHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCc----HHHHH--------------------HHHHHHHhhc--HHHH
Confidence 7899999999999999999999999976543 111 11111 2222222221 4333
Q ss_pred hhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccc
Q 013867 188 GAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNM 267 (435)
Q Consensus 188 eal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~ 267 (435)
+....+++. + .|....+...+|.+|..+|+|++|+..|++++++. . .++.+
T Consensus 62 --~~~~~~al~-----~-----------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---p---~~~~~----- 112 (228)
T 4i17_A 62 --ADYFDIAIK-----K-----------NYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAV---P---GNATI----- 112 (228)
T ss_dssp --HHHHHHHHH-----T-----------TCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---T---TCHHH-----
T ss_pred --HHHHHHHHH-----h-----------CcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC---C---CcHHH-----
Confidence 323333332 1 14455677889999999999999999999999981 1 11000
Q ss_pred cchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChh--HHHHHHHHHHHHHHhhhh
Q 013867 268 ALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPK--VGVVLTCLALMFRNKAMQ 332 (435)
Q Consensus 268 ~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~--va~~L~nLA~ly~~qG~~ 332 (435)
.......+.++|.+|..+|+|++|+..|++|+.+ +|+ ...++.+||.+|..+|+.
T Consensus 113 --~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~~l~~~~~~~~~~ 169 (228)
T 4i17_A 113 --EKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--------TSKKWKTDALYSLGVLFYNNGAD 169 (228)
T ss_dssp --HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--------SCHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--------CCCcccHHHHHHHHHHHHHHHHH
Confidence 0011245789999999999999999999999986 788 899999999999999997
No 82
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.59 E-value=7e-14 Score=135.86 Aligned_cols=239 Identities=14% Similarity=0.057 Sum_probs=153.5
Q ss_pred hhcHHHHHHHHHHHHhccCcCCCCCcchH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 013867 79 DESYSQGMLVLEQCLSTQPSDGQLAESWR-GISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYL 157 (435)
Q Consensus 79 ~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~-A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~ 157 (435)
.|+|++|+...++... ..|.. .....-++..|..+|+|++|+..++.. . ...+.++..++-.+.
T Consensus 12 ~g~y~~ai~~~~~~~~--------~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~---~----~~~~~a~~~la~~~~ 76 (291)
T 3mkr_A 12 IGSYQQCINEAQRVKP--------SSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS---S----APELQAVRMFAEYLA 76 (291)
T ss_dssp TTCHHHHHHHHHHSCC--------CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT---S----CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccc--------CCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc---C----ChhHHHHHHHHHHHc
Confidence 6899999999987542 23444 345566889999999999999877542 1 112334444444454
Q ss_pred hcCCCcchHHHHHHHHHHHHhc-CCCchhchhhHHHHHHHHHHHHHHhcCCCccccccc-ccchhHHHHHHHHHHHHhhc
Q 013867 158 QLGQDDTSSVVADKCLQLCEKH-KPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEE-EGCTGSAALSYGEYLHATRN 235 (435)
Q Consensus 158 ~~g~~~~A~~~~~~~~~l~~~~-~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~-~~~~~~~a~~la~~~~~~G~ 235 (435)
..+..+.|....+. ++... .+. ....+...+ .+..-.|+++.|.... .+....+...++.+|..+|+
T Consensus 77 ~~~~~~~A~~~l~~---ll~~~~~P~---~~~~~~~la-----~~~~~~g~~~~Al~~l~~~~~~~~~~~l~~~~~~~g~ 145 (291)
T 3mkr_A 77 SHSRRDAIVAELDR---EMSRSVDVT---NTTFLLMAA-----SIYFYDQNPDAALRTLHQGDSLECMAMTVQILLKLDR 145 (291)
T ss_dssp CSTTHHHHHHHHHH---HHHSCCCCS---CHHHHHHHH-----HHHHHTTCHHHHHHHHTTCCSHHHHHHHHHHHHHTTC
T ss_pred CCCcHHHHHHHHHH---HHhcccCCC---CHHHHHHHH-----HHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence 44544444332222 22221 121 112222111 1222345555544222 23455677778899999999
Q ss_pred hHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhH
Q 013867 236 FLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKV 315 (435)
Q Consensus 236 y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~v 315 (435)
+++|+..|++++++. |+++.......+..++..+|+|++|..+|++++.. +|+.
T Consensus 146 ~~~A~~~l~~~~~~~------------------p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--------~p~~ 199 (291)
T 3mkr_A 146 LDLARKELKKMQDQD------------------EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--------CSPT 199 (291)
T ss_dssp HHHHHHHHHHHHHHC------------------TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--------SCCC
T ss_pred HHHHHHHHHHHHhhC------------------cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--------CCCc
Confidence 999999999999881 11111111122334555679999999999999975 5666
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHHH
Q 013867 316 GVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEA 382 (435)
Q Consensus 316 a~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yaea 382 (435)
...++++|.+|..+|++++| +..|+++|++. |++|+ .+.|++.++..+|++.++
T Consensus 200 ~~~~~~la~~~~~~g~~~eA------~~~l~~al~~~----p~~~~---~l~~l~~~~~~~g~~~ea 253 (291)
T 3mkr_A 200 LLLLNGQAACHMAQGRWEAA------EGVLQEALDKD----SGHPE---TLINLVVLSQHLGKPPEV 253 (291)
T ss_dssp HHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHC----TTCHH---HHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHH------HHHHHHHHHhC----CCCHH---HHHHHHHHHHHcCCCHHH
Confidence 77899999999999998776 89999999875 34444 678899999999998764
No 83
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.59 E-value=3.9e-14 Score=119.04 Aligned_cols=146 Identities=17% Similarity=0.083 Sum_probs=121.4
Q ss_pred hHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013867 220 GSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTR 299 (435)
Q Consensus 220 ~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~r 299 (435)
..+...+|.+|..+|+|++|+.+|++++++..+... + .....+++++|.+|..+|+|++|..+|++
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~-------------~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 74 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD-------------K-AAERIAYSNLGNAYIFLGEFETASEYYKK 74 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-------------H-HHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCC-------------c-hHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 456677889999999999999999999999653211 1 11335778999999999999999999999
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCH
Q 013867 300 TLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGY 379 (435)
Q Consensus 300 AL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~y 379 (435)
++.+.++. .+++..+.++.++|.+|..+|++++| +..+++++++.+..+ +++..+..+.+++.++..+|+|
T Consensus 75 a~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A------~~~~~~a~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~ 145 (164)
T 3ro3_A 75 TLLLARQL--KDRAVEAQSCYSLGNTYTLLQDYEKA------IDYHLKHLAIAQELK-DRIGEGRACWSLGNAYTALGNH 145 (164)
T ss_dssp HHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHh--CCcHHHHHHHHHHHHHHHHHhhHHHH------HHHHHHHHHHHHHcc-chHhHHHHHHHHHHHHHHccCH
Confidence 99999876 56677899999999999999998876 899999999986533 3455677888999999999999
Q ss_pred HHHhhHhhh
Q 013867 380 AEALSVQQN 388 (435)
Q Consensus 380 aeal~~~~~ 388 (435)
++|+.....
T Consensus 146 ~~A~~~~~~ 154 (164)
T 3ro3_A 146 DQAMHFAEK 154 (164)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 998877643
No 84
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.55 E-value=4.2e-13 Score=115.61 Aligned_cols=170 Identities=21% Similarity=0.256 Sum_probs=127.5
Q ss_pred hHHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 013867 59 NPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFK 138 (435)
Q Consensus 59 ~~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~ 138 (435)
+..+..+..+|..+.. .|+|++|+.+|++++... |....++..+|.+|..+|++++|++.+++++.+
T Consensus 5 ~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~- 71 (186)
T 3as5_A 5 DIRQVYYRDKGISHAK----AGRYSQAVMLLEQVYDAD--------AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD- 71 (186)
T ss_dssp CHHHHHHHHHHHHHHH----HTCHHHHHHHHTTTCCTT--------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred chhhHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhC--------ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-
Confidence 4456666777777742 578888888888877542 334677888888888888888888877776321
Q ss_pred hhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccc
Q 013867 139 NSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGC 218 (435)
Q Consensus 139 e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~ 218 (435)
.+.
T Consensus 72 ---------------------~~~-------------------------------------------------------- 74 (186)
T 3as5_A 72 ---------------------APD-------------------------------------------------------- 74 (186)
T ss_dssp ---------------------CTT--------------------------------------------------------
T ss_pred ---------------------CCC--------------------------------------------------------
Confidence 111
Q ss_pred hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013867 219 TGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILT 298 (435)
Q Consensus 219 ~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~ 298 (435)
...+...+|.++..+|+|++|+.+|++++.+. . . ....+.++|.+|..+|+|++|..+|+
T Consensus 75 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~------~-----------~~~~~~~~a~~~~~~~~~~~A~~~~~ 134 (186)
T 3as5_A 75 NVKVATVLGLTYVQVQKYDLAVPLLIKVAEAN---P------I-----------NFNVRFRLGVALDNLGRFDEAIDSFK 134 (186)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---T------T-----------CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC---c------H-----------hHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 01223345667788999999999999999881 1 1 01356789999999999999999999
Q ss_pred HHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 299 RTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 299 rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
+++.+. |+...++.++|.+|..+|++++| ...|++++++.
T Consensus 135 ~~~~~~--------~~~~~~~~~la~~~~~~~~~~~A------~~~~~~~~~~~ 174 (186)
T 3as5_A 135 IALGLR--------PNEGKVHRAIAFSYEQMGRHEEA------LPHFKKANELD 174 (186)
T ss_dssp HHHHHC--------TTCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHH
T ss_pred HHHhcC--------ccchHHHHHHHHHHHHcCCHHHH------HHHHHHHHHcC
Confidence 999863 44567889999999999998776 89999999987
No 85
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.54 E-value=2.2e-13 Score=135.57 Aligned_cols=221 Identities=14% Similarity=0.095 Sum_probs=156.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhh-------------HHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHH
Q 013867 110 SLLAMSTLLYESGNYVEAIEKLQKVENFKNSI-------------LGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLC 176 (435)
Q Consensus 110 ~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~-------------L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~ 176 (435)
+...-|.-+.++|+|++|++.|+++++..+.. +.....++.+++.+|..+|.++.|..+...+..+.
T Consensus 6 ~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~ 85 (434)
T 4b4t_Q 6 SKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYM 85 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 34566788899999999999999998755432 11122234455555555555444333332222222
Q ss_pred HhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhccc
Q 013867 177 EKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDF 256 (435)
Q Consensus 177 ~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~ 256 (435)
.. .+++ .....+...++.++..+|++++|+.+|++++.+..+...
T Consensus 86 ~~-----------------------------~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~- 130 (434)
T 4b4t_Q 86 MQ-----------------------------FAKS-----KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKR- 130 (434)
T ss_dssp HT-----------------------------SCHH-----HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSC-
T ss_pred HH-----------------------------ccch-----HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCc-
Confidence 11 0000 011123344566778899999999999999999654322
Q ss_pred CCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhh
Q 013867 257 SDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSS 336 (435)
Q Consensus 257 ~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~ 336 (435)
... ......+||.+|..+|+|++|.+++++++.+..+. .++|..+.++.+++.+|..+|+|++|
T Consensus 131 ----~~~---------~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~A- 194 (434)
T 4b4t_Q 131 ----VFL---------KHSLSIKLATLHYQKKQYKDSLALINDLLREFKKL--DDKPSLVDVHLLESKVYHKLRNLAKS- 194 (434)
T ss_dssp ----CSS---------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS--SCSTHHHHHHHHHHHHHHHTTCHHHH-
T ss_pred ----cHH---------HHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhc--ccchhHHHHHHHHHHHHHHhCcHHHH-
Confidence 211 23567899999999999999999999999876653 57899999999999999999998877
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHHHhhHh
Q 013867 337 ALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQ 386 (435)
Q Consensus 337 ~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~ 386 (435)
..+|++++.+....+..+...+....+++.++...|+|.+|...+
T Consensus 195 -----~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~ 239 (434)
T 4b4t_Q 195 -----KASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYF 239 (434)
T ss_dssp -----HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHH
T ss_pred -----HHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 899999999986543333336777788999999999999997755
No 86
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.54 E-value=5.2e-14 Score=152.62 Aligned_cols=206 Identities=15% Similarity=0.015 Sum_probs=139.2
Q ss_pred ChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 013867 78 SDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYL 157 (435)
Q Consensus 78 s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~ 157 (435)
..|+|++|+..|++++.......+..+|..+..+.++|.+|..+|+|++|+..|++++++..... .++.+++.
T Consensus 403 ~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~----~a~~~lg~--- 475 (681)
T 2pzi_A 403 VLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRW----RLVWYRAV--- 475 (681)
T ss_dssp TTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCH----HHHHHHHH---
T ss_pred cccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchH----HHHHHHHH---
Confidence 56899999999999996554455566788889999999999999999999999999865432221 11222222
Q ss_pred hcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchH
Q 013867 158 QLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFL 237 (435)
Q Consensus 158 ~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~ 237 (435)
++...+. |++|.. .+.+++.. . |....+..++|.+|..+|+|+
T Consensus 476 -----------------~~~~~g~--~~~A~~--~~~~al~l-----~-----------P~~~~~~~~lg~~~~~~g~~~ 518 (681)
T 2pzi_A 476 -----------------AELLTGD--YDSATK--HFTEVLDT-----F-----------PGELAPKLALAATAELAGNTD 518 (681)
T ss_dssp -----------------HHHHHTC--HHHHHH--HHHHHHHH-----S-----------TTCSHHHHHHHHHHHHHTCCC
T ss_pred -----------------HHHHcCC--HHHHHH--HHHHHHHh-----C-----------CCChHHHHHHHHHHHHcCChH
Confidence 2222221 443333 33444432 1 334467788899999999999
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHH
Q 013867 238 LAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGV 317 (435)
Q Consensus 238 eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~ 317 (435)
+ +..|++|+++ . |+ ...+++|||.+|..+|+|++|...|++|+++ .|+...
T Consensus 519 ~-~~~~~~al~~-----------~-------P~--~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------~P~~~~ 569 (681)
T 2pzi_A 519 E-HKFYQTVWST-----------N-------DG--VISAAFGLARARSAEGDRVGAVRTLDEVPPT--------SRHFTT 569 (681)
T ss_dssp T-TCHHHHHHHH-----------C-------TT--CHHHHHHHHHHHHHTTCHHHHHHHHHTSCTT--------STTHHH
T ss_pred H-HHHHHHHHHh-----------C-------Cc--hHHHHHHHHHHHHHcCCHHHHHHHHHhhccc--------CcccHH
Confidence 9 9999999988 1 11 1246789999999999999999999988864 577788
Q ss_pred HHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCc
Q 013867 318 VLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEG 361 (435)
Q Consensus 318 ~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~ 361 (435)
++.|+|.+|...|+.+++ ++.-+++|++.++...++.|.
T Consensus 570 a~~~~~~~~~~~~~~~~~-----~~~~~~~A~~~l~~~~~~~~~ 608 (681)
T 2pzi_A 570 ARLTSAVTLLSGRSTSEV-----TEEQIRDAARRVEALPPTEPR 608 (681)
T ss_dssp HHHHHHHHTC-------C-----CHHHHHHHHHHHHTSCTTSTT
T ss_pred HHHHHHHHHHccCCCCCC-----CHHHHHHHHHHHhhCCCCcHH
Confidence 889999998877765544 267788898888766666665
No 87
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.54 E-value=9.8e-13 Score=123.56 Aligned_cols=198 Identities=16% Similarity=0.205 Sum_probs=142.7
Q ss_pred HHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhh
Q 013867 63 LQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYE----SGNYVEAIEKLQKVENFK 138 (435)
Q Consensus 63 ~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~----qGky~eA~~l~~ral~i~ 138 (435)
..+.++|..+.......|+|++|+.+|++++... -..++++||.+|.. +|++++|++.|+++++..
T Consensus 39 ~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~----------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~ 108 (273)
T 1ouv_A 39 SGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN----------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK 108 (273)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC----------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC
Confidence 4567788887542223679999999999999762 35788999999999 999999999999986542
Q ss_pred hhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccc
Q 013867 139 NSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGC 218 (435)
Q Consensus 139 e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~ 218 (435)
...++.+++.+|.. |. ....++++| +..+.+++. . +
T Consensus 109 ------~~~a~~~lg~~~~~-~~-----------------~~~~~~~~A--~~~~~~a~~-----~-~------------ 144 (273)
T 1ouv_A 109 ------YAEGCASLGGIYHD-GK-----------------VVTRDFKKA--VEYFTKACD-----L-N------------ 144 (273)
T ss_dssp ------CHHHHHHHHHHHHH-CS-----------------SSCCCHHHH--HHHHHHHHH-----T-T------------
T ss_pred ------CccHHHHHHHHHHc-CC-----------------CcccCHHHH--HHHHHHHHh-----c-C------------
Confidence 11223333333322 00 001123333 333344433 1 1
Q ss_pred hhHHHHHHHHHHHH----hhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHH----cCCH
Q 013867 219 TGSAALSYGEYLHA----TRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAH----MGNF 290 (435)
Q Consensus 219 ~~~~a~~la~~~~~----~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~----qG~y 290 (435)
...+..++|.+|.. +|++++|+.+|++|++. + + ..++.+||.+|.. +|++
T Consensus 145 ~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-----~---~--------------~~a~~~lg~~~~~g~~~~~~~ 202 (273)
T 1ouv_A 145 DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL-----K---D--------------SPGCFNAGNMYHHGEGATKNF 202 (273)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----T---C--------------HHHHHHHHHHHHHTCSSCCCH
T ss_pred cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-----C---C--------------HHHHHHHHHHHHcCCCCCccH
Confidence 12456778888888 99999999999999866 1 0 1357899999999 9999
Q ss_pred HHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHH----hhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 291 GDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRN----KAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 291 ~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~----qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
++|..+|++++++ | + ..++.+||.+|.. ++++++| ...|++|+++-
T Consensus 203 ~~A~~~~~~a~~~-----~--~---~~a~~~l~~~~~~g~~~~~~~~~A------~~~~~~a~~~~ 252 (273)
T 1ouv_A 203 KEALARYSKACEL-----E--N---GGGCFNLGAMQYNGEGVTRNEKQA------IENFKKGCKLG 252 (273)
T ss_dssp HHHHHHHHHHHHT-----T--C---HHHHHHHHHHHHTTSSSSCCSTTH------HHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC-----C--C---HHHHHHHHHHHHcCCCcccCHHHH------HHHHHHHHHcC
Confidence 9999999999986 2 2 5689999999999 9998776 89999999875
No 88
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.50 E-value=2.2e-12 Score=120.85 Aligned_cols=189 Identities=12% Similarity=0.049 Sum_probs=145.6
Q ss_pred CCCChHHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHH--------cCCHHH
Q 013867 55 GLNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYE--------SGNYVE 126 (435)
Q Consensus 55 g~~~~~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~--------qGky~e 126 (435)
.|++|.....+..+|.++.+ +|+|++|+..|++++.+. |++|.....+.++|.+|.. +|+|++
T Consensus 45 ~p~~~~~~~a~~~lg~~~~~----~~~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~ 115 (261)
T 3qky_A 45 GRTHEWAADAQFYLARAYYQ----NKEYLLAASEYERFIQIY-----QIDPRVPQAEYERAMCYYKLSPPYELDQTDTRK 115 (261)
T ss_dssp CSCSTTHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHC-----TTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHH
T ss_pred CCCCcchHHHHHHHHHHHHH----hCcHHHHHHHHHHHHHHC-----CCCchhHHHHHHHHHHHHHhcccccccchhHHH
Confidence 67788778889999999853 689999999999999876 6678899999999999999 999999
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcC
Q 013867 127 AIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHG 206 (435)
Q Consensus 127 A~~l~~ral~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg 206 (435)
|+..|++++... |+..-. ..... +...+.
T Consensus 116 A~~~~~~~l~~~----------------------p~~~~~---~~a~~------------------~~~~~~-------- 144 (261)
T 3qky_A 116 AIEAFQLFIDRY----------------------PNHELV---DDATQ------------------KIRELR-------- 144 (261)
T ss_dssp HHHHHHHHHHHC----------------------TTCTTH---HHHHH------------------HHHHHH--------
T ss_pred HHHHHHHHHHHC----------------------cCchhH---HHHHH------------------HHHHHH--------
Confidence 999999985432 221100 00000 000000
Q ss_pred CCcccccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHH
Q 013867 207 NLESGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAH 286 (435)
Q Consensus 207 ~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~ 286 (435)
+........+|.+|..+|+|++|+..|+++++.. ++++. ...++.+||.+|..
T Consensus 145 ----------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~------p~~~~-----------~~~a~~~l~~~~~~ 197 (261)
T 3qky_A 145 ----------AKLARKQYEAARLYERRELYEAAAVTYEAVFDAY------PDTPW-----------ADDALVGAMRAYIA 197 (261)
T ss_dssp ----------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTSTT-----------HHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC------CCCch-----------HHHHHHHHHHHHHH
Confidence 0011234567889999999999999999999882 11110 22468899999997
Q ss_pred c----------CCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhh
Q 013867 287 M----------GNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHS 335 (435)
Q Consensus 287 q----------G~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A 335 (435)
+ |+|++|...|++++... |+||.+..+...|+.++..+++++++
T Consensus 198 ~g~~~~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~l~~~~~~~~~~~~~ 251 (261)
T 3qky_A 198 YAEQSVRARQPERYRRAVELYERLLQIF-----PDSPLLRTAEELYTRARQRLTELEGD 251 (261)
T ss_dssp HHHTSCGGGHHHHHHHHHHHHHHHHHHC-----TTCTHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hcccchhhcccchHHHHHHHHHHHHHHC-----CCChHHHHHHHHHHHHHHHHHHhhhh
Confidence 7 99999999999999865 89999999999999999999998776
No 89
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.49 E-value=1.5e-12 Score=112.16 Aligned_cols=165 Identities=15% Similarity=0.088 Sum_probs=129.2
Q ss_pred cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCc
Q 013867 104 ESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPEN 183 (435)
Q Consensus 104 Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~ 183 (435)
.+..+..+.++|..|..+|+|++|+..|++++.. .+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----------------------~~~--------------------- 40 (186)
T 3as5_A 4 DDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDA----------------------DAF--------------------- 40 (186)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCT----------------------TSC---------------------
T ss_pred cchhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHh----------------------Ccc---------------------
Confidence 4567888999999999999999999888775211 111
Q ss_pred hhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcc
Q 013867 184 YKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLG 263 (435)
Q Consensus 184 ~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~ 263 (435)
...+...+|.++..+|+|++|..+|++++++. . .
T Consensus 41 -----------------------------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~------~-- 74 (186)
T 3as5_A 41 -----------------------------------DVDVALHLGIAYVKTGAVDRGTELLERSLADA---P------D-- 74 (186)
T ss_dssp -----------------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---T------T--
T ss_pred -----------------------------------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---C------C--
Confidence 01123345667788999999999999999881 1 1
Q ss_pred cccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHH
Q 013867 264 SCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEG 343 (435)
Q Consensus 264 ~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~ 343 (435)
....+.++|.+|..+|+|++|..+|++++.+ +|+....+.++|.+|..+|++++| ..
T Consensus 75 ---------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A------~~ 131 (186)
T 3as5_A 75 ---------NVKVATVLGLTYVQVQKYDLAVPLLIKVAEA--------NPINFNVRFRLGVALDNLGRFDEA------ID 131 (186)
T ss_dssp ---------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHH------HH
T ss_pred ---------CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CcHhHHHHHHHHHHHHHcCcHHHH------HH
Confidence 1135689999999999999999999999987 455567889999999999998776 89
Q ss_pred HHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHHHhhHhh
Q 013867 344 LYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQQ 387 (435)
Q Consensus 344 Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~~ 387 (435)
.|++++++. |+......+++.++..+|+|++|+....
T Consensus 132 ~~~~~~~~~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~ 168 (186)
T 3as5_A 132 SFKIALGLR-------PNEGKVHRAIAFSYEQMGRHEEALPHFK 168 (186)
T ss_dssp HHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhcC-------ccchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999875 2334567789999999999998877663
No 90
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.47 E-value=1.8e-13 Score=119.63 Aligned_cols=115 Identities=19% Similarity=0.194 Sum_probs=89.6
Q ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013867 223 ALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLT 302 (435)
Q Consensus 223 a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~ 302 (435)
...+|.+|..+|+|++|+.+|++++++ . |+ ...++.+||.+|..+|+|++|+..|++|++
T Consensus 34 ~~~la~~y~~~~~~~~A~~~~~~al~~---~---------------p~--~~~a~~~lg~~~~~~~~~~~A~~~~~~al~ 93 (150)
T 4ga2_A 34 GFYFAKLYYEAKEYDLAKKYICTYINV---Q---------------ER--DPKAHRFLGLLYELEENTDKAVECYRRSVE 93 (150)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---C---------------TT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh---C---------------CC--CHHHHHHHHHHHHHcCchHHHHHHHHHHHH
Confidence 345788899999999999999999998 1 11 124678999999999999999999999998
Q ss_pred HHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhc
Q 013867 303 KTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARG 377 (435)
Q Consensus 303 I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G 377 (435)
+ .|+-..++.+||.+|..+|++++| |+.++++|+++. |++|.+ ...++.++..+|
T Consensus 94 ~--------~p~~~~~~~~la~~~~~~~~~~~a-----a~~~~~~al~l~----P~~~~~---~~l~~~ll~~~G 148 (150)
T 4ga2_A 94 L--------NPTQKDLVLKIAELLCKNDVTDGR-----AKYWVERAAKLF----PGSPAV---YKLKEQLLDCEG 148 (150)
T ss_dssp H--------CTTCHHHHHHHHHHHHHHCSSSSH-----HHHHHHHHHHHS----TTCHHH---HHHHHHHHHTCC
T ss_pred h--------CCCCHHHHHHHHHHHHHcCChHHH-----HHHHHHHHHHhC----cCCHHH---HHHHHHHHHHhC
Confidence 7 455566899999999999998775 355679999885 566653 334455555555
No 91
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.46 E-value=3.9e-12 Score=116.22 Aligned_cols=187 Identities=13% Similarity=0.106 Sum_probs=126.6
Q ss_pred HHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhH
Q 013867 63 LQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSIL 142 (435)
Q Consensus 63 ~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L 142 (435)
..+.+.|..+.. .|+|++|+..|++++.+... . -...+.++|.+|..+|+|++|+..|++++.+.+...
T Consensus 8 ~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~~~----~---~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 76 (228)
T 4i17_A 8 NQLKNEGNDALN----AKNYAVAFEKYSEYLKLTNN----Q---DSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLA 76 (228)
T ss_dssp HHHHHHHHHHHH----TTCHHHHHHHHHHHHHHTTT----C---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHH
T ss_pred HHHHHHHHHHHH----ccCHHHHHHHHHHHHhccCC----C---CcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchH
Confidence 677888888853 68999999999999987641 1 125677799999999999999999999987654432
Q ss_pred HHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHH
Q 013867 143 GVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSA 222 (435)
Q Consensus 143 ~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~ 222 (435)
.++..++.++..+|.+..|....+.++.+ .++.+. ....+..+
T Consensus 77 ----~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----------------------------~p~~~~----~~~~~~~~ 119 (228)
T 4i17_A 77 ----NAYIGKSAAYRDMKNNQEYIATLTEGIKA-----------------------------VPGNAT----IEKLYAIY 119 (228)
T ss_dssp ----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------------------------STTCHH----HHHHHHHH
T ss_pred ----HHHHHHHHHHHHcccHHHHHHHHHHHHHH-----------------------------CCCcHH----HHHHHHHH
Confidence 23444555555555554443333322221 111100 00112245
Q ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCH------------
Q 013867 223 ALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNF------------ 290 (435)
Q Consensus 223 a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y------------ 290 (435)
..++|.++..+|+|++|+..|++++++ . |+.....++.+||.+|..+|+.
T Consensus 120 ~~~~g~~~~~~~~~~~A~~~~~~al~~-----~-------------p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~ 181 (228)
T 4i17_A 120 YLKEGQKFQQAGNIEKAEENYKHATDV-----T-------------SKKWKTDALYSLGVLFYNNGADVLRKATPLASSN 181 (228)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTS-----S-------------CHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTC
T ss_pred HHHHhHHHHHhccHHHHHHHHHHHHhc-----C-------------CCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 667888999999999999999999977 1 2211124678999999999998
Q ss_pred ---------------HHHHHHHHHHHHHHHHhhCCCChhHHHHHH
Q 013867 291 ---------------GDAEEILTRTLTKTEELFGSHHPKVGVVLT 320 (435)
Q Consensus 291 ---------------~eAe~l~~rAL~I~e~~lG~~HP~va~~L~ 320 (435)
++|.++|++|+++ .|++|++...+.
T Consensus 182 ~~~~~~~~~~~~~~~~~A~~~~~~a~~l-----~p~~~~~~~~l~ 221 (228)
T 4i17_A 182 KEKYASEKAKADAAFKKAVDYLGEAVTL-----SPNRTEIKQMQD 221 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc-----CCCCHHHHHHHH
Confidence 6677777777665 577776655443
No 92
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.45 E-value=1.1e-12 Score=114.56 Aligned_cols=140 Identities=13% Similarity=0.092 Sum_probs=110.8
Q ss_pred ChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 013867 78 SDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYL 157 (435)
Q Consensus 78 s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~ 157 (435)
++|++++|+..|++++ +..|.-...+.+||.+|..+|+|++|++.|++++.+
T Consensus 9 ~~~~~e~ai~~~~~a~--------~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~-------------------- 60 (150)
T 4ga2_A 9 SKADVERYIASVQGST--------PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV-------------------- 60 (150)
T ss_dssp CHHHHHHHHHHHHHHS--------CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------
T ss_pred HcChHHHHHHHHHHhc--------ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------------------
Confidence 6899999999999998 445778888899999999999999999999987432
Q ss_pred hcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchH
Q 013867 158 QLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFL 237 (435)
Q Consensus 158 ~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~ 237 (435)
.|. ...+..++|.+|..+|+|+
T Consensus 61 --~p~--------------------------------------------------------~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 61 --QER--------------------------------------------------------DPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp --CTT--------------------------------------------------------CHHHHHHHHHHHHHTTCHH
T ss_pred --CCC--------------------------------------------------------CHHHHHHHHHHHHHcCchH
Confidence 222 1123345677889999999
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHHHHHhhCCCChhHH
Q 013867 238 LAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEI-LTRTLTKTEELFGSHHPKVG 316 (435)
Q Consensus 238 eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l-~~rAL~I~e~~lG~~HP~va 316 (435)
+|+..|++++++ . |+ ...++.+||.+|..+|++++|... +++|+.+ -|+||.+
T Consensus 83 ~A~~~~~~al~~-----------~-------p~--~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l-----~P~~~~~- 136 (150)
T 4ga2_A 83 KAVECYRRSVEL-----------N-------PT--QKDLVLKIAELLCKNDVTDGRAKYWVERAAKL-----FPGSPAV- 136 (150)
T ss_dssp HHHHHHHHHHHH-----------C-------TT--CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH-----STTCHHH-
T ss_pred HHHHHHHHHHHh-----------C-------CC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh-----CcCCHHH-
Confidence 999999999998 1 11 124678999999999999986654 6999986 4677754
Q ss_pred HHHHHHHHHHHHhhh
Q 013867 317 VVLTCLALMFRNKAM 331 (435)
Q Consensus 317 ~~L~nLA~ly~~qG~ 331 (435)
++.++.++..+|+
T Consensus 137 --~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 137 --YKLKEQLLDCEGE 149 (150)
T ss_dssp --HHHHHHHHHTCCC
T ss_pred --HHHHHHHHHHhCc
Confidence 6778888888875
No 93
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.45 E-value=6.5e-11 Score=121.62 Aligned_cols=282 Identities=10% Similarity=0.045 Sum_probs=155.7
Q ss_pred HHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Q 013867 62 VLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYE----SGNYVEAIEKLQKVENF 137 (435)
Q Consensus 62 A~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~----qGky~eA~~l~~ral~i 137 (435)
+..+.++|..+.......+++++|+.+|+++.... -...+++||.+|.. .+++++|+..|+++.+.
T Consensus 75 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~ 144 (490)
T 2xm6_A 75 TPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG----------LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ 144 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 44566777777432222567888888888887531 23566778888888 78888888888887543
Q ss_pred hhhhHHHHHHHHHHHHHHHHh----cCCCcchHHHHHHHH------------HHHHhcC--CCchhchhhHHHHHHHHH-
Q 013867 138 KNSILGVRVAAMEALAGLYLQ----LGQDDTSSVVADKCL------------QLCEKHK--PENYKTYGAVNSRANAVK- 198 (435)
Q Consensus 138 ~e~~L~i~vaale~L~g~~~~----~g~~~~A~~~~~~~~------------~l~~~~~--~~~~~eaeal~~~a~Ai~- 198 (435)
.. ..++.+|+.+|.. .+.+..|..+..+.+ .++.... ..+++++..+ +.+++.
T Consensus 145 ~~------~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~--~~~a~~~ 216 (490)
T 2xm6_A 145 GR------DSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQW--YRKSATS 216 (490)
T ss_dssp TC------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHH--HHHHHHT
T ss_pred CC------HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHH--HHHHHHC
Confidence 21 2233344444443 333344444433322 1222100 1123322222 222221
Q ss_pred ---------HHHHHh----cCCCccccccc----ccchhHHHHHHHHHHHH----hhchHHHHHHHHHHHHHHHHhcccC
Q 013867 199 ---------GLVELA----HGNLESGLQEE----EGCTGSAALSYGEYLHA----TRNFLLAKKFYQKVIEVLAEQKDFS 257 (435)
Q Consensus 199 ---------~~~~~l----gg~h~~a~~~~----~~~~~~~a~~la~~~~~----~G~y~eAe~ly~rAL~I~~~~~~~~ 257 (435)
+.+... .++.+.|...+ ......+..++|.+|.. .+++++|..+|++|++. +
T Consensus 217 ~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~-----~-- 289 (490)
T 2xm6_A 217 GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ-----G-- 289 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT-----T--
T ss_pred CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc-----C--
Confidence 011111 11111111111 11223455667777777 78888888888887633 1
Q ss_pred CCCCcccccccchHHHHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhh
Q 013867 258 DMNTLGSCNMALEEVALAATFALGQLEAHM-----GNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQ 332 (435)
Q Consensus 258 ~~~~l~~~~~~~~~~~l~~l~nLa~ly~~q-----G~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~ 332 (435)
+ ..+..+||.+|... +++++|..+|++|++. .+| .++++||.+|...|..
T Consensus 290 -~--------------~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-------~~~---~a~~~lg~~y~~~g~~ 344 (490)
T 2xm6_A 290 -N--------------SDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-------GDA---TAQANLGAIYFRLGSE 344 (490)
T ss_dssp -C--------------HHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-------TCH---HHHHHHHHHHHHSCCH
T ss_pred -C--------------HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-------CCH---HHHHHHHHHHHhCCCc
Confidence 0 13567888888887 8888888888888763 233 4678888888776511
Q ss_pred hhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHH----hcCHHHHhhHhhhhhhH--HHHHHHHHHHHhc
Q 013867 333 EHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALA----RGGYAEALSVQQNRKDE--GERMKRWAEAAWR 405 (435)
Q Consensus 333 e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a----~G~yaeal~~~~~r~~e--ae~~~~~a~~~~~ 405 (435)
. .+.+|..+|++|++. ++ .....+++.+|.. .+++.+|+..+.+-.+. .+.+...+..+..
T Consensus 345 ~---~~~~A~~~~~~a~~~------~~---~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~ 411 (490)
T 2xm6_A 345 E---EHKKAVEWFRKAAAK------GE---KAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYY 411 (490)
T ss_dssp H---HHHHHHHHHHHHHHT------TC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred c---cHHHHHHHHHHHHHC------CC---HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHc
Confidence 1 133447788888764 22 2356678888877 77888887776442222 3444444444443
No 94
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.45 E-value=1.1e-12 Score=111.66 Aligned_cols=105 Identities=12% Similarity=0.121 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013867 221 SAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRT 300 (435)
Q Consensus 221 ~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rA 300 (435)
.+..++|..+..+|+|++|+.+|++||++. |+ ...+++|+|.+|..+|+|++|+..|++|
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~------------------p~--~~~~~~nlg~~~~~~~~~~~A~~~~~~a 68 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD------------------PS--NITFYNNKAAVYFEEKKFAECVQFCEKA 68 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------TT--CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------------------CC--CHHHHHhHHHHHHHhhhHHHHHHHHHHH
Confidence 345568899999999999999999999981 11 1246889999999999999999999999
Q ss_pred HHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 301 LTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 301 L~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
+.+... ....|+.++.++.++|.+|..+|++++| ...|++||++.
T Consensus 69 l~~~~~-~~~~~~~~a~~~~~lg~~~~~~~~~~~A------~~~~~kal~~~ 113 (127)
T 4gcn_A 69 VEVGRE-TRADYKLIAKAMSRAGNAFQKQNDLSLA------VQWFHRSLSEF 113 (127)
T ss_dssp HHHHHH-TTCCHHHHHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHS
T ss_pred HHhCcc-cchhhHHHHHHHHHHHHHHHHcCCHHHH------HHHHHHHHhhC
Confidence 999765 4567889999999999999999998876 89999999875
No 95
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.43 E-value=1.7e-12 Score=136.04 Aligned_cols=52 Identities=10% Similarity=0.077 Sum_probs=29.4
Q ss_pred hhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 013867 79 DESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFK 138 (435)
Q Consensus 79 ~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~ 138 (435)
.|++++|+.+|++++++ +|..+..+.++|.+|..+|+|++|++.|++++++.
T Consensus 2 ~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 53 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRH--------RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH 53 (568)
T ss_dssp ---------------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS
T ss_pred CccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 37899999999999865 35667889999999999999999999999986543
No 96
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.43 E-value=8e-12 Score=115.40 Aligned_cols=199 Identities=9% Similarity=0.039 Sum_probs=131.8
Q ss_pred HHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhH
Q 013867 63 LQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSIL 142 (435)
Q Consensus 63 ~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L 142 (435)
..+.+.|..+. ..|+|++|+..|++++... |+.|.....+.++|.+|..+|+|++|+..|+++++..
T Consensus 5 ~~~~~~a~~~~----~~g~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~---- 71 (225)
T 2yhc_A 5 NEIYATAQQKL----QDGNWRQAITQLEALDNRY-----PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN---- 71 (225)
T ss_dssp HHHHHHHHHHH----HHTCHHHHHHHHHHHHHHC-----TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHH----HcCCHHHHHHHHHHHHHhC-----CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC----
Confidence 44566677764 3689999999999999765 5667788999999999999999999999999986543
Q ss_pred HHHHHHHHHHHHHHHhcCCCcchHH-HHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhH
Q 013867 143 GVRVAAMEALAGLYLQLGQDDTSSV-VADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGS 221 (435)
Q Consensus 143 ~i~vaale~L~g~~~~~g~~~~A~~-~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~ 221 (435)
|...-.. ..-.+...+.. .+.. ...
T Consensus 72 ------------------P~~~~~~~a~~~~g~~~~~-------------------------~~~~-----------~~~ 97 (225)
T 2yhc_A 72 ------------------PTHPNIDYVMYMRGLTNMA-------------------------LDDS-----------ALQ 97 (225)
T ss_dssp ------------------TTCTTHHHHHHHHHHHHHH-------------------------HHC---------------
T ss_pred ------------------cCCCcHHHHHHHHHHHHHh-------------------------hhhh-----------hhh
Confidence 2211000 00001111100 0000 001
Q ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHH-HH--------HHHHHHHHHHHHcCCHHH
Q 013867 222 AALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEV-AL--------AATFALGQLEAHMGNFGD 292 (435)
Q Consensus 222 ~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~-~l--------~~l~nLa~ly~~qG~y~e 292 (435)
....++..+..+|++++|+..|+++++.. ++++ .+ ++-. .+ .....+|.+|..+|+|++
T Consensus 98 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~------P~~~-~a-----~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~ 165 (225)
T 2yhc_A 98 GFFGVDRSDRDPQQARAAFSDFSKLVRGY------PNSQ-YT-----TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVA 165 (225)
T ss_dssp ----------CCHHHHHHHHHHHHHHTTC------TTCT-TH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred hhhccchhhcCcHHHHHHHHHHHHHHHHC------cCCh-hH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHH
Confidence 11233455677899999999999998772 1111 11 0000 00 111478999999999999
Q ss_pred HHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHH
Q 013867 293 AEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEF 351 (435)
Q Consensus 293 Ae~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I 351 (435)
|...|++++.++ |++|.+..++.++|.+|..+|++++| ...+++++.-
T Consensus 166 A~~~~~~~l~~~-----p~~~~~~~a~~~l~~~~~~~g~~~~A------~~~~~~l~~~ 213 (225)
T 2yhc_A 166 VVNRVEGMLRDY-----PDTQATRDALPLMENAYRQMQMNAQA------EKVAKIIAAN 213 (225)
T ss_dssp HHHHHHHHHHHS-----TTSHHHHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHC
T ss_pred HHHHHHHHHHHC-----cCCCccHHHHHHHHHHHHHcCCcHHH------HHHHHHHHhh
Confidence 999999999875 67888899999999999999998876 7777766543
No 97
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.43 E-value=6.2e-12 Score=115.15 Aligned_cols=166 Identities=13% Similarity=0.045 Sum_probs=120.2
Q ss_pred HHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHH----------------HHHHHHHcCCHH
Q 013867 62 VLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLA----------------MSTLLYESGNYV 125 (435)
Q Consensus 62 A~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~n----------------La~ly~~qGky~ 125 (435)
+..+...|..+. ..|+|++|+.+|++++.+. |+-+..+.. +|.+|..+|+|+
T Consensus 4 ~~~~~~~g~~~~----~~g~~~~A~~~~~~al~~~--------p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 71 (208)
T 3urz_A 4 VDEMLQKVSAAI----EAGQNGQAVSYFRQTIALN--------IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYD 71 (208)
T ss_dssp HHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHC--------HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHH----HCCCHHHHHHHHHHHHHhC--------CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHH
Confidence 456677787774 3689999999999999765 555566666 999999999999
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhc
Q 013867 126 EAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAH 205 (435)
Q Consensus 126 eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lg 205 (435)
+|+..|++++.+ .|.
T Consensus 72 ~A~~~~~~al~~----------------------~p~------------------------------------------- 86 (208)
T 3urz_A 72 KAYLFYKELLQK----------------------APN------------------------------------------- 86 (208)
T ss_dssp HHHHHHHHHHHH----------------------CTT-------------------------------------------
T ss_pred HHHHHHHHHHHH----------------------CCC-------------------------------------------
Confidence 999999887332 222
Q ss_pred CCCcccccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHH
Q 013867 206 GNLESGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEA 285 (435)
Q Consensus 206 g~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~ 285 (435)
...+..++|.+|..+|+|++|+..|++++++ . |+ ...++++||.+|.
T Consensus 87 -------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----------~-------P~--~~~a~~~lg~~~~ 133 (208)
T 3urz_A 87 -------------NVDCLEACAEMQVCRGQEKDALRMYEKILQL-----------E-------AD--NLAANIFLGNYYY 133 (208)
T ss_dssp -------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----------C-------TT--CHHHHHHHHHHHH
T ss_pred -------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----------C-------CC--CHHHHHHHHHHHH
Confidence 1123345677888999999999999999998 1 11 1246789999998
Q ss_pred HcCCH--HHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 286 HMGNF--GDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 286 ~qG~y--~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
.+|+. ++++..|.+++ -++ .......++|..+..+|+|++| +..|++|+++.
T Consensus 134 ~~~~~~~~~~~~~~~~~~-------~~~--~~~~a~~~~g~~~~~~~~~~~A------~~~~~~al~l~ 187 (208)
T 3urz_A 134 LTAEQEKKKLETDYKKLS-------SPT--KMQYARYRDGLSKLFTTRYEKA------RNSLQKVILRF 187 (208)
T ss_dssp HHHHHHHHHHHHHHC----------CCC--HHHHHHHHHHHHHHHHHTHHHH------HHHHHHHTTTS
T ss_pred HHhHHHHHHHHHHHHHHh-------CCC--chhHHHHHHHHHHHHccCHHHH------HHHHHHHHHhC
Confidence 87754 34555555543 232 2334577889999999998766 89999999876
No 98
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.42 E-value=5.8e-11 Score=121.96 Aligned_cols=123 Identities=15% Similarity=0.109 Sum_probs=98.7
Q ss_pred hhHHHHHHHHHHHHh-----hchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcC---CH
Q 013867 219 TGSAALSYGEYLHAT-----RNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMG---NF 290 (435)
Q Consensus 219 ~~~~a~~la~~~~~~-----G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG---~y 290 (435)
...+...+|.+|... +++++|+.+|++|++. + + ..+.++||.+|...| ++
T Consensus 290 ~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-----~---~--------------~~a~~~lg~~y~~~g~~~~~ 347 (490)
T 2xm6_A 290 NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-----G---D--------------ATAQANLGAIYFRLGSEEEH 347 (490)
T ss_dssp CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-----T---C--------------HHHHHHHHHHHHHSCCHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-----C---C--------------HHHHHHHHHHHHhCCCcccH
Confidence 345667889898887 9999999999999865 1 1 135789999999977 89
Q ss_pred HHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHH----hhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhh
Q 013867 291 GDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRN----KAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKV 366 (435)
Q Consensus 291 ~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~----qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l 366 (435)
++|..+|++|++. .+ ..++++||.+|.. ++++++| ..+|++|++. ++ ....
T Consensus 348 ~~A~~~~~~a~~~-------~~---~~a~~~Lg~~y~~g~g~~~~~~~A------~~~~~~A~~~------~~---~~a~ 402 (490)
T 2xm6_A 348 KKAVEWFRKAAAK-------GE---KAAQFNLGNALLQGKGVKKDEQQA------AIWMRKAAEQ------GL---SAAQ 402 (490)
T ss_dssp HHHHHHHHHHHHT-------TC---HHHHHHHHHHHHHTSSSCCCHHHH------HHHHHHHHHT------TC---HHHH
T ss_pred HHHHHHHHHHHHC-------CC---HHHHHHHHHHHHcCCCCCCCHHHH------HHHHHHHHhC------CC---HHHH
Confidence 9999999999874 23 4689999999999 7887666 8999999873 22 3467
Q ss_pred ccHHHHHHH----hcCHHHHhhHhhh
Q 013867 367 DRTDIVALA----RGGYAEALSVQQN 388 (435)
Q Consensus 367 ~nla~~~~a----~G~yaeal~~~~~ 388 (435)
.|++.+|.. .+++.+|...+.+
T Consensus 403 ~~Lg~~y~~g~g~~~d~~~A~~~~~~ 428 (490)
T 2xm6_A 403 VQLGEIYYYGLGVERDYVQAWAWFDT 428 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 789999988 8899999887644
No 99
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.42 E-value=8.8e-12 Score=114.12 Aligned_cols=125 Identities=18% Similarity=0.134 Sum_probs=93.5
Q ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013867 223 ALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLT 302 (435)
Q Consensus 223 a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~ 302 (435)
..++|.+|..+|+|++|+..|++++++ . |+ ...++.+||.+|..+|+|++|+..|+++++
T Consensus 57 ~~~lg~~~~~~g~~~~A~~~~~~al~~-----------~-------p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 116 (208)
T 3urz_A 57 ATELALAYKKNRNYDKAYLFYKELLQK-----------A-------PN--NVDCLEACAEMQVCRGQEKDALRMYEKILQ 116 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-----------C-------TT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHH-----------C-------CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445788999999999999999999998 1 11 124678999999999999999999999999
Q ss_pred HHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHHH
Q 013867 303 KTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEA 382 (435)
Q Consensus 303 I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yaea 382 (435)
+ +|+-..++++||.+|..+|+.+.+ .++..|++++ .+. |. .....++++++...|+|++|
T Consensus 117 ~--------~P~~~~a~~~lg~~~~~~~~~~~~----~~~~~~~~~~------~~~-~~-~~a~~~~g~~~~~~~~~~~A 176 (208)
T 3urz_A 117 L--------EADNLAANIFLGNYYYLTAEQEKK----KLETDYKKLS------SPT-KM-QYARYRDGLSKLFTTRYEKA 176 (208)
T ss_dssp H--------CTTCHHHHHHHHHHHHHHHHHHHH----HHHHHHC---------CCC-HH-HHHHHHHHHHHHHHHTHHHH
T ss_pred c--------CCCCHHHHHHHHHHHHHHhHHHHH----HHHHHHHHHh------CCC-ch-hHHHHHHHHHHHHccCHHHH
Confidence 7 466677899999999988875432 3344444432 111 21 22345678888889999999
Q ss_pred hhHhh
Q 013867 383 LSVQQ 387 (435)
Q Consensus 383 l~~~~ 387 (435)
+..++
T Consensus 177 ~~~~~ 181 (208)
T 3urz_A 177 RNSLQ 181 (208)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87663
No 100
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.41 E-value=6.4e-12 Score=116.04 Aligned_cols=222 Identities=9% Similarity=-0.051 Sum_probs=147.7
Q ss_pred CChHHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013867 57 NSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVEN 136 (435)
Q Consensus 57 ~~~~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~ 136 (435)
..|..+..+..+|..+.. .|+|++|+.+|++++.+. |....++.++|.+|..+|+|++|++.|++++.
T Consensus 38 ~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 105 (275)
T 1xnf_A 38 TDDERAQLLYERGVLYDS----LGLRALARNDFSQALAIR--------PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE 105 (275)
T ss_dssp CHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCchhHHHHHHHHHHHHH----cccHHHHHHHHHHHHHcC--------CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 356788899999999853 689999999999999874 44567899999999999999999999999988
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCccccccc-
Q 013867 137 FKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEE- 215 (435)
Q Consensus 137 i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~- 215 (435)
+.+.. ..++..++.++..+|.+..|....+.++.+... .. ....... +. ...|+++.|....
T Consensus 106 ~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~----~~---~~~~~~~--~~----~~~~~~~~A~~~~~ 168 (275)
T 1xnf_A 106 LDPTY----NYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPN----DP---FRSLWLY--LA----EQKLDEKQAKEVLK 168 (275)
T ss_dssp HCTTC----THHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CH---HHHHHHH--HH----HHHHCHHHHHHHHH
T ss_pred cCccc----cHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC----Ch---HHHHHHH--HH----HHhcCHHHHHHHHH
Confidence 76543 234566777788888888777766666543211 00 0000000 00 0011211111000
Q ss_pred -----ccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCH
Q 013867 216 -----EGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNF 290 (435)
Q Consensus 216 -----~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y 290 (435)
.+.. .....++.++..++++++|...|++++...... .|+ ....+.+||.+|..+|+|
T Consensus 169 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~--------------~~~--~~~~~~~la~~~~~~g~~ 231 (275)
T 1xnf_A 169 QHFEKSDKE-QWGWNIVEFYLGNISEQTLMERLKADATDNTSL--------------AEH--LSETNFYLGKYYLSLGDL 231 (275)
T ss_dssp HHHHHSCCC-STHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHH--------------HHH--HHHHHHHHHHHHHHTTCH
T ss_pred HHHhcCCcc-hHHHHHHHHHHHhcCHHHHHHHHHHHhcccccc--------------ccc--ccHHHHHHHHHHHHcCCH
Confidence 0100 122345666777888888888888887662110 011 134678999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhh
Q 013867 291 GDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHS 335 (435)
Q Consensus 291 ~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A 335 (435)
++|..+|++++.+ .|+++. ..+.++...|++++|
T Consensus 232 ~~A~~~~~~al~~-----~p~~~~------~~~~~~~~l~~~~~a 265 (275)
T 1xnf_A 232 DSATALFKLAVAN-----NVHNFV------EHRYALLELSLLGQD 265 (275)
T ss_dssp HHHHHHHHHHHTT-----CCTTCH------HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhC-----CchhHH------HHHHHHHHHHHHHhh
Confidence 9999999999986 243332 336677888888776
No 101
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.40 E-value=2.2e-11 Score=117.77 Aligned_cols=215 Identities=14% Similarity=0.116 Sum_probs=140.9
Q ss_pred HHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHH-------HcCCH-------HHHHHHHHHHHH-hhhhhHHHHHH
Q 013867 83 SQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLY-------ESGNY-------VEAIEKLQKVEN-FKNSILGVRVA 147 (435)
Q Consensus 83 ~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~-------~qGky-------~eA~~l~~ral~-i~e~~L~i~va 147 (435)
++|+.+|++++.+. |.-...+.++|.++. .+|++ ++|+..|++++. +.....
T Consensus 33 ~~a~~~~~~al~~~--------p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~----- 99 (308)
T 2ond_A 33 KRVMFAYEQCLLVL--------GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNM----- 99 (308)
T ss_dssp HHHHHHHHHHHHHH--------TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCH-----
T ss_pred HHHHHHHHHHHHHc--------CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccH-----
Confidence 79999999999764 556677788888876 46886 999999999966 332211
Q ss_pred HHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhH-HHHHH
Q 013867 148 AMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGS-AALSY 226 (435)
Q Consensus 148 ale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~-~a~~l 226 (435)
.+....+.+....+. ++++...+.++ +. +. |.... +..++
T Consensus 100 -------------------~~~~~~~~~~~~~~~--~~~A~~~~~~a--l~-----~~-----------p~~~~~~~~~~ 140 (308)
T 2ond_A 100 -------------------LLYFAYADYEESRMK--YEKVHSIYNRL--LA-----IE-----------DIDPTLVYIQY 140 (308)
T ss_dssp -------------------HHHHHHHHHHHHTTC--HHHHHHHHHHH--HT-----SS-----------SSCTHHHHHHH
T ss_pred -------------------HHHHHHHHHHHhcCC--HHHHHHHHHHH--Hh-----cc-----------ccCccHHHHHH
Confidence 122233344444332 44444433332 22 11 22223 67788
Q ss_pred HHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHH
Q 013867 227 GEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEA-HMGNFGDAEEILTRTLTKTE 305 (435)
Q Consensus 227 a~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~-~qG~y~eAe~l~~rAL~I~e 305 (435)
+.++..+|++++|...|++|+++- +.. . ....+.+.+.. .+|++++|..+|++++.+.
T Consensus 141 ~~~~~~~~~~~~A~~~~~~a~~~~--------p~~-~-----------~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~- 199 (308)
T 2ond_A 141 MKFARRAEGIKSGRMIFKKAREDA--------RTR-H-----------HVYVTAALMEYYCSKDKSVAFKIFELGLKKY- 199 (308)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHTST--------TCC-T-----------HHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-
T ss_pred HHHHHHhcCHHHHHHHHHHHHhcC--------CCC-H-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 999999999999999999999761 111 1 12334555533 4799999999999999973
Q ss_pred HhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHHHhhH
Q 013867 306 ELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSV 385 (435)
Q Consensus 306 ~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yaeal~~ 385 (435)
|+-...+.+++.++..+|++++| ..+|+||+++..- .|+ +......+...++...|++++|..+
T Consensus 200 -------p~~~~~~~~~~~~~~~~g~~~~A------~~~~~~al~~~~l-~p~--~~~~l~~~~~~~~~~~g~~~~a~~~ 263 (308)
T 2ond_A 200 -------GDIPEYVLAYIDYLSHLNEDNNT------RVLFERVLTSGSL-PPE--KSGEIWARFLAFESNIGDLASILKV 263 (308)
T ss_dssp -------TTCHHHHHHHHHHHHTTCCHHHH------HHHHHHHHHSSSS-CGG--GCHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred -------CCcHHHHHHHHHHHHHCCCHHHH------HHHHHHHHhccCC-CHH--HHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 44567789999999999998776 8999999986321 121 1122333455566667777766544
Q ss_pred h
Q 013867 386 Q 386 (435)
Q Consensus 386 ~ 386 (435)
.
T Consensus 264 ~ 264 (308)
T 2ond_A 264 E 264 (308)
T ss_dssp H
T ss_pred H
Confidence 3
No 102
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.39 E-value=1.3e-11 Score=119.14 Aligned_cols=88 Identities=17% Similarity=0.082 Sum_probs=58.8
Q ss_pred HHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhC
Q 013867 230 LHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFG 309 (435)
Q Consensus 230 ~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG 309 (435)
+..+|++++|+..|+++++. . |+ ......+||.+|..+|++++|+..|++++.+
T Consensus 195 l~~~~~~~~a~~~l~~al~~-----------~-------P~--~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~------ 248 (287)
T 3qou_A 195 LLXQAADTPEIQQLQQQVAE-----------N-------PE--DAALATQLALQLHQVGRNEEALELLFGHLRX------ 248 (287)
T ss_dssp HHHHHTSCHHHHHHHHHHHH-----------C-------TT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred HHhhcccCccHHHHHHHHhc-----------C-------Cc--cHHHHHHHHHHHHHcccHHHHHHHHHHHHhc------
Confidence 44567777777777777766 1 11 1134567777777777777777777777775
Q ss_pred CCChhH--HHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHH
Q 013867 310 SHHPKV--GVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEF 351 (435)
Q Consensus 310 ~~HP~v--a~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I 351 (435)
+|+. +....+|+.+|..+|+.++| ...|+|+|..
T Consensus 249 --~p~~~~~~a~~~l~~~~~~~g~~~~a------~~~~r~al~~ 284 (287)
T 3qou_A 249 --DLTAADGQTRXTFQEILAALGTGDAL------ASXYRRQLYA 284 (287)
T ss_dssp --CTTGGGGHHHHHHHHHHHHHCTTCHH------HHHHHHHHHH
T ss_pred --ccccccchHHHHHHHHHHHcCCCCcH------HHHHHHHHHH
Confidence 3444 56677777777777776655 6777777754
No 103
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.38 E-value=3.8e-13 Score=140.17 Aligned_cols=183 Identities=12% Similarity=0.044 Sum_probs=135.7
Q ss_pred ChHHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 013867 58 SNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENF 137 (435)
Q Consensus 58 ~~~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i 137 (435)
++..|..+.++|..+. .+|+|++|+..|++++++ +|..+.+++++|.+|..+|+|++|++.|++++++
T Consensus 2 ~~~~a~~~~~lg~~~~----~~g~~~~A~~~~~~Al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 69 (477)
T 1wao_1 2 ALKRAEELKTQANDYF----KAKDYENAIKFYSQAIEL--------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL 69 (477)
T ss_dssp CHHHHTTSSSSSSSTT----TTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred hHhHHHHHHHHHHHHH----HhCCHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 4555666666666663 478999999999999977 4667899999999999999999999999987332
Q ss_pred hhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCccccccccc
Q 013867 138 KNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEG 217 (435)
Q Consensus 138 ~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~ 217 (435)
.|.
T Consensus 70 ----------------------~p~------------------------------------------------------- 72 (477)
T 1wao_1 70 ----------------------DKK------------------------------------------------------- 72 (477)
T ss_dssp ----------------------CTT-------------------------------------------------------
T ss_pred ----------------------CCC-------------------------------------------------------
Confidence 221
Q ss_pred chhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHH--HHHcCCHHHHHH
Q 013867 218 CTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQL--EAHMGNFGDAEE 295 (435)
Q Consensus 218 ~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~l--y~~qG~y~eAe~ 295 (435)
...+..++|.+|..+|+|++|+..|++|+++. . ... .+..+++.+ +..+|+|++|++
T Consensus 73 -~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~---p------~~~-----------~~~~~l~~~~~~~~~g~~~~A~~ 131 (477)
T 1wao_1 73 -YIKGYYRRAASNMALGKFRAALRDYETVVKVK---P------HDK-----------DAKMKYQECNKIVKQKAFERAIA 131 (477)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS---T------TCT-----------THHHHHHHHHHHHHHHHHCCC--
T ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---C------CCH-----------HHHHHHHHHHHHHHHHHHHHHhc
Confidence 11233456777889999999999999999981 1 111 235677777 899999999999
Q ss_pred HHH-----------HHHHHHHHhhCCCChhH---HHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcC
Q 013867 296 ILT-----------RTLTKTEELFGSHHPKV---GVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKA 354 (435)
Q Consensus 296 l~~-----------rAL~I~e~~lG~~HP~v---a~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~ 354 (435)
+|+ +++.+.....|+.||+. ...+.++...+..+++..+. +...++.++.+|++.
T Consensus 132 ~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~itl~~l~~lie~l~~~~~l~e~----~v~~L~~~a~eil~~ 200 (477)
T 1wao_1 132 GDEHKRSVVDSLDIESMTIEDEYSGPKLEDGKVTISFMKELMQWYKDQKKLHRK----CAYQILVQVKEVLSK 200 (477)
T ss_dssp ----CCSTTTCCTTSSCCCCTTCCSCCCGGGSCCHHHHHHHHHHHHTCCCCCHH----HHHHHHHHHHHHHHT
T ss_pred cccccchhHhhhhhhhccccccccccccccccccHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHHHHcc
Confidence 999 99999999999999984 55566666666666666554 457799999999953
No 104
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.36 E-value=2.6e-11 Score=111.91 Aligned_cols=173 Identities=11% Similarity=0.025 Sum_probs=128.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhc
Q 013867 107 RGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKT 186 (435)
Q Consensus 107 ~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~e 186 (435)
++..+.++|..+..+|+|++|+..|++++.. .|... +
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~----------------------~p~~~-------------------~-- 39 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNR----------------------YPFGP-------------------Y-- 39 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----------------------CTTST-------------------T--
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------------CCCCh-------------------H--
Confidence 4677899999999999999999999987321 22210 0
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCccccc
Q 013867 187 YGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCN 266 (435)
Q Consensus 187 aeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~ 266 (435)
...+...+|.+|..+|+|++|+..|++++++. ++++.
T Consensus 40 --------------------------------~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~------P~~~~----- 76 (225)
T 2yhc_A 40 --------------------------------SQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN------PTHPN----- 76 (225)
T ss_dssp --------------------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCTT-----
T ss_pred --------------------------------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC------cCCCc-----
Confidence 01233445677888999999999999999871 11111
Q ss_pred ccchHHHHHHHHHHHHHHHH------------------cCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHH---------
Q 013867 267 MALEEVALAATFALGQLEAH------------------MGNFGDAEEILTRTLTKTEELFGSHHPKVGVVL--------- 319 (435)
Q Consensus 267 ~~~~~~~l~~l~nLa~ly~~------------------qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L--------- 319 (435)
...++..+|.+|.. +|++++|...|++++..+ |++|.+-.++
T Consensus 77 ------~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-----P~~~~a~~a~~~l~~~~~~ 145 (225)
T 2yhc_A 77 ------IDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-----PNSQYTTDATKRLVFLKDR 145 (225)
T ss_dssp ------HHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-----TTCTTHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-----cCChhHHHHHHHHHHHHHH
Confidence 11256677777765 789999999999998763 6777654433
Q ss_pred -----HHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHHHhhHh
Q 013867 320 -----TCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQ 386 (435)
Q Consensus 320 -----~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~ 386 (435)
..+|.+|..+|++++| ...|++++++. |++|.....+.+++.++..+|++++|+...
T Consensus 146 ~~~~~~~~a~~~~~~~~~~~A------~~~~~~~l~~~----p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~ 207 (225)
T 2yhc_A 146 LAKYEYSVAEYYTERGAWVAV------VNRVEGMLRDY----PDTQATRDALPLMENAYRQMQMNAQAEKVA 207 (225)
T ss_dssp HHHHHHHHHHHHHHHTCHHHH------HHHHHHHHHHS----TTSHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCcHHHH------HHHHHHHHHHC----cCCCccHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 5788899999997766 89999999987 455666678889999999999999998765
No 105
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.36 E-value=8.7e-11 Score=113.54 Aligned_cols=190 Identities=11% Similarity=0.076 Sum_probs=130.2
Q ss_pred HHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCC
Q 013867 82 YSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQ 161 (435)
Q Consensus 82 Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~g~ 161 (435)
+++|+.+|++++.+. +|+-...+.++|.++..+|++++|+..|++++.+..
T Consensus 80 ~~~A~~~~~rAl~~~-------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p---------------------- 130 (308)
T 2ond_A 80 SDEAANIYERAISTL-------LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIED---------------------- 130 (308)
T ss_dssp HHHHHHHHHHHHTTT-------TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSS----------------------
T ss_pred hHHHHHHHHHHHHHh-------CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccc----------------------
Confidence 599999999999732 355667889999999999999999999999966432
Q ss_pred CcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHH-HHhhchHHHH
Q 013867 162 DDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYL-HATRNFLLAK 240 (435)
Q Consensus 162 ~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~-~~~G~y~eAe 240 (435)
... .......+.+....+. +++|...+ .+++. .. |+...+....+.+. ..+|++++|.
T Consensus 131 ~~~-~~~~~~~~~~~~~~~~--~~~A~~~~--~~a~~-----~~-----------p~~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 131 IDP-TLVYIQYMKFARRAEG--IKSGRMIF--KKARE-----DA-----------RTRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp SCT-HHHHHHHHHHHHHHHC--HHHHHHHH--HHHHT-----ST-----------TCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred cCc-cHHHHHHHHHHHHhcC--HHHHHHHH--HHHHh-----cC-----------CCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 211 0012223333332221 33333332 23222 11 11223334444442 3479999999
Q ss_pred HHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChh-HHHHH
Q 013867 241 KFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPK-VGVVL 319 (435)
Q Consensus 241 ~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~-va~~L 319 (435)
.+|++++++. |+ ....+.++|.++..+|++++|..+|++|+.+. +-.|+ -....
T Consensus 190 ~~~~~al~~~------------------p~--~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-----~l~p~~~~~l~ 244 (308)
T 2ond_A 190 KIFELGLKKY------------------GD--IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG-----SLPPEKSGEIW 244 (308)
T ss_dssp HHHHHHHHHH------------------TT--CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS-----SSCGGGCHHHH
T ss_pred HHHHHHHHhC------------------CC--cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcc-----CCCHHHHHHHH
Confidence 9999999982 11 01356899999999999999999999999751 12343 46678
Q ss_pred HHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 320 TCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 320 ~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
.+++.++...|++++| +.+++|++++.
T Consensus 245 ~~~~~~~~~~g~~~~a------~~~~~~a~~~~ 271 (308)
T 2ond_A 245 ARFLAFESNIGDLASI------LKVEKRRFTAF 271 (308)
T ss_dssp HHHHHHHHHHSCHHHH------HHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHH------HHHHHHHHHHc
Confidence 8889999999998776 89999999987
No 106
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.35 E-value=5.5e-12 Score=124.87 Aligned_cols=170 Identities=15% Similarity=0.122 Sum_probs=127.5
Q ss_pred hhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Q 013867 79 DESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQ 158 (435)
Q Consensus 79 ~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~ 158 (435)
.+++++|+..|++++.. .|..+..+.++|.+|..+|+|++|+..|++++.+.+..
T Consensus 126 L~~~~~A~~~~~~a~~~--------~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~----------------- 180 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEE--------KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYE----------------- 180 (336)
T ss_dssp EEEEECCCCGGGCCHHH--------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTC-----------------
T ss_pred EeecccccchhcCCHHH--------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhcc-----------------
Confidence 34566677666666533 47889999999999999999999999999986543211
Q ss_pred cCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchHH
Q 013867 159 LGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLL 238 (435)
Q Consensus 159 ~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~e 238 (435)
+. . . .. ....+. +....+..++|.+|..+|+|++
T Consensus 181 --~~-~----------------~--~~-------~~~~~~------------------~~~~~~~~nla~~~~~~g~~~~ 214 (336)
T 1p5q_A 181 --SS-F----------------S--NE-------EAQKAQ------------------ALRLASHLNLAMCHLKLQAFSA 214 (336)
T ss_dssp --CC-C----------------C--SH-------HHHHHH------------------HHHHHHHHHHHHHHHHTTCHHH
T ss_pred --cc-C----------------C--hH-------HHHHHH------------------HHHHHHHHHHHHHHHHcCCHHH
Confidence 00 0 0 00 000000 1122456778999999999999
Q ss_pred HHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHH
Q 013867 239 AKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVV 318 (435)
Q Consensus 239 Ae~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~ 318 (435)
|+..|++||++. + . ...+++++|.+|..+|+|++|+..|++|+++ .|+...+
T Consensus 215 A~~~~~~al~~~--------p-~-----------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------~P~~~~a 266 (336)
T 1p5q_A 215 AIESCNKALELD--------S-N-----------NEKGLSRRGEAHLAVNDFELARADFQKVLQL--------YPNNKAA 266 (336)
T ss_dssp HHHHHHHHHHHC--------T-T-----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSSCHHH
T ss_pred HHHHHHHHHHhC--------C-C-----------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--------CCCCHHH
Confidence 999999999981 1 1 1246889999999999999999999999997 4666678
Q ss_pred HHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 319 LTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 319 L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
+.+|+.+|..+|++++|. ..+|++.+..+
T Consensus 267 ~~~l~~~~~~~~~~~~a~-----~~~~~~~~~~~ 295 (336)
T 1p5q_A 267 KTQLAVCQQRIRRQLARE-----KKLYANMFERL 295 (336)
T ss_dssp HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHh
Confidence 999999999999988762 56788887766
No 107
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.35 E-value=1e-11 Score=105.78 Aligned_cols=103 Identities=10% Similarity=-0.016 Sum_probs=88.3
Q ss_pred ccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHH
Q 013867 216 EGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEE 295 (435)
Q Consensus 216 ~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~ 295 (435)
+|....+..+.|..|..+|+|++|+..|++||++- + . ....+.++|.+|..+|+|++|+.
T Consensus 9 nP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~--------p-~-----------~~~~~~~~~~~~~~~~~~~~A~~ 68 (126)
T 4gco_A 9 NPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD--------P-E-----------NAILYSNRAACLTKLMEFQRALD 68 (126)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------T-T-----------CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------C-C-----------CHHHHHHHhhHHHhhccHHHHHH
Confidence 35666777788999999999999999999999881 1 1 12467899999999999999999
Q ss_pred HHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 296 ILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 296 l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
.|++|+.+ .|+...++.++|.+|..+|++++| +..|+++|++-
T Consensus 69 ~~~~al~~--------~p~~~~a~~~lg~~~~~~~~~~~A------~~~~~~al~l~ 111 (126)
T 4gco_A 69 DCDTCIRL--------DSKFIKGYIRKAACLVAMREWSKA------QRAYEDALQVD 111 (126)
T ss_dssp HHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHC
T ss_pred HHHHHHHh--------hhhhhHHHHHHHHHHHHCCCHHHH------HHHHHHHHHHC
Confidence 99999987 455667899999999999998876 89999999985
No 108
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.34 E-value=4.7e-12 Score=137.23 Aligned_cols=174 Identities=14% Similarity=0.022 Sum_probs=119.1
Q ss_pred CChHHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013867 57 NSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVEN 136 (435)
Q Consensus 57 ~~~~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~ 136 (435)
.+|+.+..+.++|..+. .+|+|++|+..|++++++. |.-+..++++|.+|..+|+|++|++.|+++++
T Consensus 428 ~~p~~~~~~~~~a~~~~----~~g~~~~A~~~~~~al~~~--------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 495 (681)
T 2pzi_A 428 DFSESVELPLMEVRALL----DLGDVAKATRKLDDLAERV--------GWRWRLVWYRAVAELLTGDYDSATKHFTEVLD 495 (681)
T ss_dssp CCTTCSHHHHHHHHHHH----HHTCHHHHHHHHHHHHHHH--------CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHH----hcCCHHHHHHHHHHHhccC--------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33444455666666663 3689999999999999764 55678999999999999999999999999976
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccc
Q 013867 137 FKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEE 216 (435)
Q Consensus 137 i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~ 216 (435)
+...... ++.+++ .++...+. |++ .. .+.+++.. .
T Consensus 496 l~P~~~~----~~~~lg--------------------~~~~~~g~--~~~-~~--~~~~al~~-----~----------- 530 (681)
T 2pzi_A 496 TFPGELA----PKLALA--------------------ATAELAGN--TDE-HK--FYQTVWST-----N----------- 530 (681)
T ss_dssp HSTTCSH----HHHHHH--------------------HHHHHHTC--CCT-TC--HHHHHHHH-----C-----------
T ss_pred hCCCChH----HHHHHH--------------------HHHHHcCC--hHH-HH--HHHHHHHh-----C-----------
Confidence 5433211 122222 33333332 333 33 34444442 1
Q ss_pred cchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHH-HH
Q 013867 217 GCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDA-EE 295 (435)
Q Consensus 217 ~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eA-e~ 295 (435)
|....+..++|.+|..+|+|++|+..|++|+++ . |+ ...+..++|.+|...|++++| +.
T Consensus 531 P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-----------~-------P~--~~~a~~~~~~~~~~~~~~~~~~~~ 590 (681)
T 2pzi_A 531 DGVISAAFGLARARSAEGDRVGAVRTLDEVPPT-----------S-------RH--FTTARLTSAVTLLSGRSTSEVTEE 590 (681)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTT-----------S-------TT--HHHHHHHHHHHTC-------CCHH
T ss_pred CchHHHHHHHHHHHHHcCCHHHHHHHHHhhccc-----------C-------cc--cHHHHHHHHHHHHccCCCCCCCHH
Confidence 445568889999999999999999999999977 1 11 235678999999999998888 88
Q ss_pred HHHHHHHHHHHh
Q 013867 296 ILTRTLTKTEEL 307 (435)
Q Consensus 296 l~~rAL~I~e~~ 307 (435)
-+++|+...++.
T Consensus 591 ~~~~A~~~l~~~ 602 (681)
T 2pzi_A 591 QIRDAARRVEAL 602 (681)
T ss_dssp HHHHHHHHHHTS
T ss_pred HHHHHHHHHhhC
Confidence 999999877654
No 109
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.34 E-value=6.1e-12 Score=106.99 Aligned_cols=100 Identities=11% Similarity=0.084 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcC
Q 013867 275 AATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKA 354 (435)
Q Consensus 275 ~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~ 354 (435)
.+..+||..|..+|+|++|+..|++|+++ +|+.+.+++|+|.+|..+|+|++| +..|++||+|...
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~--------~p~~~~~~~nlg~~~~~~~~~~~A------~~~~~~al~~~~~ 74 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIEL--------DPSNITFYNNKAAVYFEEKKFAEC------VQFCEKAVEVGRE 74 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHhHHHHHHHhhhHHHH------HHHHHHHHHhCcc
Confidence 35679999999999999999999999987 677888999999999999998876 8999999999865
Q ss_pred CCCCCCchhhhhccHHHHHHHhcCHHHHhhHhhh
Q 013867 355 PPLESEGVETKVDRTDIVALARGGYAEALSVQQN 388 (435)
Q Consensus 355 ~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~~~ 388 (435)
...+++..+..+.+++.++..+|+|.+|+..+.+
T Consensus 75 ~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~k 108 (127)
T 4gcn_A 75 TRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHR 108 (127)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5667777888999999999999999999887744
No 110
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.33 E-value=1.6e-11 Score=108.92 Aligned_cols=167 Identities=13% Similarity=0.013 Sum_probs=115.4
Q ss_pred HHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhH
Q 013867 63 LQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSIL 142 (435)
Q Consensus 63 ~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L 142 (435)
..+...|..+. ..|+|++|+.+|++++++. |+-...+.++|.+|..+|++++|+..|++++.+.. ..
T Consensus 7 ~~~~~~a~~~~----~~g~~~~A~~~~~~al~~~--------P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~ 73 (176)
T 2r5s_A 7 EQLLKQVSELL----QQGEHAQALNVIQTLSDEL--------QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DN 73 (176)
T ss_dssp TTHHHHHHHHH----HTTCHHHHHHHHHTSCHHH--------HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CH
T ss_pred HHHHHHHHHHH----HcCCHHHHHHHHHHHHHHC--------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-Ch
Confidence 34667777764 3689999999999999654 56678899999999999999999999999855432 10
Q ss_pred HHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHH
Q 013867 143 GVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSA 222 (435)
Q Consensus 143 ~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~ 222 (435)
.. . .+ ...+.+..... ..+++....+++.. +|....+
T Consensus 74 --~~--~-~~-----------------~~~~~~~~~~~-----~~~a~~~~~~al~~----------------~P~~~~~ 110 (176)
T 2r5s_A 74 --SY--K-SL-----------------IAKLELHQQAA-----ESPELKRLEQELAA----------------NPDNFEL 110 (176)
T ss_dssp --HH--H-HH-----------------HHHHHHHHHHT-----SCHHHHHHHHHHHH----------------STTCHHH
T ss_pred --HH--H-HH-----------------HHHHHHHhhcc-----cchHHHHHHHHHHh----------------CCCCHHH
Confidence 00 0 00 00011111111 11233334444431 1445577
Q ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013867 223 ALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLT 302 (435)
Q Consensus 223 a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~ 302 (435)
..++|.+|..+|+|++|+..|++++++ . |... ...+..+||.+|..+|++++|...|+++|.
T Consensus 111 ~~~la~~~~~~g~~~~A~~~~~~~l~~---~------p~~~---------~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 111 ACELAVQYNQVGRDEEALELLWNILKV---N------LGAQ---------DGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTT---C------TTTT---------TTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHh---C------cccC---------hHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 888999999999999999999999977 1 1111 013567999999999999999999999986
Q ss_pred H
Q 013867 303 K 303 (435)
Q Consensus 303 I 303 (435)
-
T Consensus 173 ~ 173 (176)
T 2r5s_A 173 S 173 (176)
T ss_dssp H
T ss_pred H
Confidence 4
No 111
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.32 E-value=2.8e-11 Score=103.05 Aligned_cols=116 Identities=9% Similarity=0.045 Sum_probs=90.9
Q ss_pred cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCc
Q 013867 104 ESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPEN 183 (435)
Q Consensus 104 Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~ 183 (435)
.|..|..+.++|..|+.+|+|++|++.|++++.+ .|.
T Consensus 9 nP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~----------------------~p~--------------------- 45 (126)
T 4gco_A 9 NPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR----------------------DPE--------------------- 45 (126)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------------CTT---------------------
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------------CCC---------------------
Confidence 5899999999999999999999999999987432 221
Q ss_pred hhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcc
Q 013867 184 YKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLG 263 (435)
Q Consensus 184 ~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~ 263 (435)
...+..++|.+|..+|+|++|+..|++|+++ . + .
T Consensus 46 -----------------------------------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---~-----p-~-- 79 (126)
T 4gco_A 46 -----------------------------------NAILYSNRAACLTKLMEFQRALDDCDTCIRL---D-----S-K-- 79 (126)
T ss_dssp -----------------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---C-----T-T--
T ss_pred -----------------------------------CHHHHHHHhhHHHhhccHHHHHHHHHHHHHh---h-----h-h--
Confidence 1123345677788999999999999999998 1 1 1
Q ss_pred cccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHH
Q 013867 264 SCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALM 325 (435)
Q Consensus 264 ~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~l 325 (435)
...++.++|.+|..+|+|++|+..|++||++ -|++++ +..+|+.+
T Consensus 80 ---------~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l-----~P~~~~---a~~~l~~~ 124 (126)
T 4gco_A 80 ---------FIKGYIRKAACLVAMREWSKAQRAYEDALQV-----DPSNEE---AREGVRNC 124 (126)
T ss_dssp ---------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHH---HHHHHHHH
T ss_pred ---------hhHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-----CcCCHH---HHHHHHHh
Confidence 1246889999999999999999999999997 455554 55566554
No 112
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.29 E-value=1.7e-11 Score=108.74 Aligned_cols=103 Identities=7% Similarity=0.006 Sum_probs=88.5
Q ss_pred ccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHH
Q 013867 216 EGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEE 295 (435)
Q Consensus 216 ~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~ 295 (435)
+|....+..++|.++..+|+|++|+.+|++++++ . |+ ....+.+||.+|..+|+|++|+.
T Consensus 32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~-----------~-------P~--~~~~~~~lg~~~~~~g~~~~Ai~ 91 (151)
T 3gyz_A 32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY-----------D-------FY--NVDYIMGLAAIYQIKEQFQQAAD 91 (151)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------C-------TT--CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----------C-------CC--CHHHHHHHHHHHHHHccHHHHHH
Confidence 3666778888999999999999999999999998 1 11 11467899999999999999999
Q ss_pred HHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 296 ILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 296 l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
.|++|+.+. |++| ..+.|+|.+|..+|++++| +..|++|+++.
T Consensus 92 ~~~~al~l~-----P~~~---~~~~~lg~~~~~lg~~~eA------~~~~~~al~l~ 134 (151)
T 3gyz_A 92 LYAVAFALG-----KNDY---TPVFHTGQCQLRLKAPLKA------KECFELVIQHS 134 (151)
T ss_dssp HHHHHHHHS-----SSCC---HHHHHHHHHHHHTTCHHHH------HHHHHHHHHHC
T ss_pred HHHHHHhhC-----CCCc---HHHHHHHHHHHHcCCHHHH------HHHHHHHHHhC
Confidence 999999873 5555 5799999999999998876 89999999986
No 113
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.26 E-value=1.2e-10 Score=99.49 Aligned_cols=128 Identities=11% Similarity=-0.013 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013867 221 SAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRT 300 (435)
Q Consensus 221 ~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rA 300 (435)
.....+|..+..+|+|++|..+|++++++. . . ....+.++|.+|..+|+|++|...|+++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---~------~-----------~~~~~~~~a~~~~~~~~~~~A~~~~~~a 73 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN---P------S-----------NAIYYGNRSLAYLRTECYGYALGDATRA 73 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---T------T-----------CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC---C------C-----------ChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 445667888999999999999999999881 1 1 1245789999999999999999999999
Q ss_pred HHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHH
Q 013867 301 LTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYA 380 (435)
Q Consensus 301 L~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~ya 380 (435)
+.+ +|+...++.++|.+|..+|++++| ...|++++++. ++++.+. ..-.++..+..+|+|+
T Consensus 74 ~~~--------~~~~~~~~~~~a~~~~~~~~~~~A------~~~~~~a~~~~----p~~~~~~-~~~~~~~~~~~~~~~~ 134 (166)
T 1a17_A 74 IEL--------DKKYIKGYYRRAASNMALGKFRAA------LRDYETVVKVK----PHDKDAK-MKYQECNKIVKQKAFE 134 (166)
T ss_dssp HHH--------CTTCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHS----TTCHHHH-HHHHHHHHHHHHHHHH
T ss_pred HHh--------CcccHHHHHHHHHHHHHhccHHHH------HHHHHHHHHhC----CCCHHHH-HHHHHHHHHHHHHHHH
Confidence 987 456667899999999999998776 89999999885 3334322 2223444477788888
Q ss_pred HHhhHhh
Q 013867 381 EALSVQQ 387 (435)
Q Consensus 381 eal~~~~ 387 (435)
+|+...+
T Consensus 135 ~A~~~~~ 141 (166)
T 1a17_A 135 RAIAGDE 141 (166)
T ss_dssp HHHHHHH
T ss_pred HHHHccc
Confidence 8877764
No 114
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.25 E-value=1.3e-10 Score=105.05 Aligned_cols=117 Identities=15% Similarity=0.123 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013867 221 SAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRT 300 (435)
Q Consensus 221 ~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rA 300 (435)
..+.+.|..+...|+|++|+..|++||++. - +++...+.++.| ....+++|+|.++..+|+|++|...|.+|
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~---p---~~~~~~a~~~~~--~~a~a~~n~g~al~~Lgr~~eAl~~~~kA 83 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEIS---H---TMPPEEAFDHAG--FDAFCHAGLAEALAGLRSFDEALHSADKA 83 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHH---T---TSCTTSCCCHHH--HHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhC---C---CCcchhhhhhcc--chHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 355677888999999999999999999993 1 111111111111 12347889999999999999999999999
Q ss_pred HHHHHHhhCCCChhHHHHH----HHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 301 LTKTEELFGSHHPKVGVVL----TCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 301 L~I~e~~lG~~HP~va~~L----~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
|+++.+. |+-+|+-+..+ +|+|.+|...|++++| +..|++||+|-
T Consensus 84 L~l~n~~-~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEA------l~~y~kAlel~ 132 (159)
T 2hr2_A 84 LHYFNRR-GELNQDEGKLWISAVYSRALALDGLGRGAEA------MPEFKKVVEMI 132 (159)
T ss_dssp HHHHHHH-CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHH
T ss_pred HHhhhcc-ccCCCchHHHHHHHHHhHHHHHHHCCCHHHH------HHHHHHHHhcC
Confidence 9986655 47789999999 9999999999998877 89999999997
No 115
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.24 E-value=4.7e-11 Score=107.18 Aligned_cols=128 Identities=13% Similarity=0.107 Sum_probs=105.1
Q ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013867 223 ALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLT 302 (435)
Q Consensus 223 a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~ 302 (435)
..++|..+..+|+|++|+.+|++++ . + . ..+++++|.+|..+|+|++|+..|++++.
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~-------~---~-~------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 65 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ-------D---P-H------------SRICFNIGCMYTILKNMTEAEKAFTRSIN 65 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS-------S---C-C------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc-------C---C-C------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4557888999999999999999884 1 0 0 13678999999999999999999999998
Q ss_pred HHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCC---------CCCCchhhhhccHHHHH
Q 013867 303 KTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPP---------LESEGVETKVDRTDIVA 373 (435)
Q Consensus 303 I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~---------~~hp~~a~~l~nla~~~ 373 (435)
+ +|+...+++++|.+|..+|++++| +..|++++++..... ...|.....+.+++.++
T Consensus 66 ~--------~~~~~~~~~~lg~~~~~~~~~~~A------~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 131 (213)
T 1hh8_A 66 R--------DKHLAVAYFQRGMLYYQTEKYDLA------IKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMY 131 (213)
T ss_dssp H--------CTTCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHH
T ss_pred h--------CccchHHHHHHHHHHHHcccHHHH------HHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHH
Confidence 7 366678899999999999998876 899999999763211 13445667888999999
Q ss_pred HHhcCHHHHhhHhh
Q 013867 374 LARGGYAEALSVQQ 387 (435)
Q Consensus 374 ~a~G~yaeal~~~~ 387 (435)
..+|+|++|+..+.
T Consensus 132 ~~~g~~~~A~~~~~ 145 (213)
T 1hh8_A 132 AKKEEWKKAEEQLA 145 (213)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHccCHHHHHHHHH
Confidence 99999999988763
No 116
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.24 E-value=1.8e-10 Score=103.28 Aligned_cols=103 Identities=18% Similarity=0.108 Sum_probs=83.5
Q ss_pred HHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 013867 224 LSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTK 303 (435)
Q Consensus 224 ~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I 303 (435)
.++|.+|..+|+|++|+.+|++++++. + . ...+++++|.+|..+|+|++|+..|++++.+
T Consensus 41 ~~lg~~~~~~g~~~~A~~~~~~al~~~--------~-~-----------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 100 (213)
T 1hh8_A 41 FNIGCMYTILKNMTEAEKAFTRSINRD--------K-H-----------LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQ 100 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--------T-T-----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC--------c-c-----------chHHHHHHHHHHHHcccHHHHHHHHHHHHHh
Confidence 345677889999999999999999981 1 1 1246789999999999999999999999986
Q ss_pred HHHhh--------CCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 304 TEELF--------GSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 304 ~e~~l--------G~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
....- ...+|....++.++|.+|..+|++++| ...|++++++.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A------~~~~~~al~~~ 151 (213)
T 1hh8_A 101 LRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKA------EEQLALATSMK 151 (213)
T ss_dssp TTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHH------HHHHHHHHTTC
T ss_pred CCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHH------HHHHHHHHHcC
Confidence 42110 114567889999999999999998876 89999999876
No 117
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.24 E-value=4e-10 Score=91.22 Aligned_cols=93 Identities=20% Similarity=0.309 Sum_probs=73.8
Q ss_pred HHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 013867 226 YGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTE 305 (435)
Q Consensus 226 la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e 305 (435)
++.++..+|++++|+.+|++++.+. . . ....+.++|.+|..+|+|++|..+|++++.+
T Consensus 41 ~a~~~~~~~~~~~A~~~~~~~~~~~---~------~-----------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-- 98 (136)
T 2fo7_A 41 LGNAYYKQGDYDEAIEYYQKALELD---P------R-----------SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-- 98 (136)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC---T------T-----------CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHC---C------C-----------chHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--
Confidence 4556677899999999999998771 1 1 0135678999999999999999999999975
Q ss_pred HhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 306 ELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 306 ~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
.|....++.++|.+|..+|++++| ...|++++++.
T Consensus 99 ------~~~~~~~~~~la~~~~~~~~~~~A------~~~~~~~~~~~ 133 (136)
T 2fo7_A 99 ------DPRSAEAWYNLGNAYYKQGDYDEA------IEYYQKALELD 133 (136)
T ss_dssp ------CTTCHHHHHHHHHHHHTTTCHHHH------HHHHHHHHHHS
T ss_pred ------CCCChHHHHHHHHHHHHHccHHHH------HHHHHHHHccC
Confidence 244456788999999999998776 78899988764
No 118
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.24 E-value=2e-10 Score=93.03 Aligned_cols=124 Identities=19% Similarity=0.264 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013867 222 AALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTL 301 (435)
Q Consensus 222 ~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL 301 (435)
+...+|.++..+|+|++|+.+|++++.+ .. . ....+.++|.+|..+|++++|..+|++++
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~------~-----------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 62 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALEL---DP------R-----------SAEAWYNLGNAYYKQGDYDEAIEYYQKAL 62 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH---CT------T-----------CHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHc---CC------c-----------chhHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3456788899999999999999999987 11 1 11356789999999999999999999999
Q ss_pred HHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHH
Q 013867 302 TKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAE 381 (435)
Q Consensus 302 ~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yae 381 (435)
.+ .|.....+.++|.+|..+|++++| ..++++++.+. |.......+++.++..+|++++
T Consensus 63 ~~--------~~~~~~~~~~l~~~~~~~~~~~~A------~~~~~~~~~~~-------~~~~~~~~~la~~~~~~~~~~~ 121 (136)
T 2fo7_A 63 EL--------DPRSAEAWYNLGNAYYKQGDYDEA------IEYYQKALELD-------PRSAEAWYNLGNAYYKQGDYDE 121 (136)
T ss_dssp HH--------CTTCHHHHHHHHHHHHTTTCHHHH------HHHHHHHHHHC-------TTCHHHHHHHHHHHHTTTCHHH
T ss_pred HH--------CCCchHHHHHHHHHHHHhcCHHHH------HHHHHHHHHhC-------CCChHHHHHHHHHHHHHccHHH
Confidence 76 344456789999999999998776 89999999874 2223456678999999999998
Q ss_pred HhhHh
Q 013867 382 ALSVQ 386 (435)
Q Consensus 382 al~~~ 386 (435)
|....
T Consensus 122 A~~~~ 126 (136)
T 2fo7_A 122 AIEYY 126 (136)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87765
No 119
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.23 E-value=3e-10 Score=104.48 Aligned_cols=180 Identities=16% Similarity=0.063 Sum_probs=124.9
Q ss_pred HHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCc
Q 013867 84 QGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDD 163 (435)
Q Consensus 84 eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~g~~~ 163 (435)
+|+.+|+++.+. .-+.++++||.+|..+|++++|++.|+++.+.. ...++.+|+.+|.. +
T Consensus 4 eA~~~~~~aa~~----------g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g------~~~a~~~lg~~y~~-~--- 63 (212)
T 3rjv_A 4 EPGSQYQQQAEA----------GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG------DGDALALLAQLKIR-N--- 63 (212)
T ss_dssp CTTHHHHHHHHT----------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT------CHHHHHHHHHHTTS-S---
T ss_pred hHHHHHHHHHHC----------CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC------CHHHHHHHHHHHHc-C---
Confidence 788999999853 235689999999999999999999999985421 01122233333322 1
Q ss_pred chHHHHHHHHHHHHhcC-CCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHH----hhchHH
Q 013867 164 TSSVVADKCLQLCEKHK-PENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHA----TRNFLL 238 (435)
Q Consensus 164 ~A~~~~~~~~~l~~~~~-~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~----~G~y~e 238 (435)
+ +.++. +++..+.+++. +....+..++|.+|.. .+++++
T Consensus 64 ----------------g~~~~~~--~A~~~~~~A~~------------------~g~~~a~~~Lg~~y~~g~g~~~d~~~ 107 (212)
T 3rjv_A 64 ----------------PQQADYP--QARQLAEKAVE------------------AGSKSGEIVLARVLVNRQAGATDVAH 107 (212)
T ss_dssp ----------------TTSCCHH--HHHHHHHHHHH------------------TTCHHHHHHHHHHHTCGGGSSCCHHH
T ss_pred ----------------CCCCCHH--HHHHHHHHHHH------------------CCCHHHHHHHHHHHHcCCCCccCHHH
Confidence 1 11233 33333444332 1134577788988887 889999
Q ss_pred HHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhhCCCChh
Q 013867 239 AKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAH----MGNFGDAEEILTRTLTKTEELFGSHHPK 314 (435)
Q Consensus 239 Ae~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~----qG~y~eAe~l~~rAL~I~e~~lG~~HP~ 314 (435)
|+.+|++|++. + + . .+ ...++++||.+|.. .+++++|..+|++|+++ +.+|.
T Consensus 108 A~~~~~~A~~~-----~---~-~-------~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~------~~~~~ 163 (212)
T 3rjv_A 108 AITLLQDAARD-----S---E-S-------DA--AVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL------SRTGY 163 (212)
T ss_dssp HHHHHHHHTSS-----T---T-S-------HH--HHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT------SCTTH
T ss_pred HHHHHHHHHHc-----C---C-C-------cc--hHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc------CCCHH
Confidence 99999999866 1 1 0 00 13578999999999 99999999999999864 23444
Q ss_pred HHHHHHHHHHHHHHh-h-----hhhhhhhhHHHHHHHHHHHHHh
Q 013867 315 VGVVLTCLALMFRNK-A-----MQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 315 va~~L~nLA~ly~~q-G-----~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
++++||.+|... | ++++ |..+|++|++.-
T Consensus 164 ---a~~~Lg~~y~~g~gg~~~~d~~~------A~~~~~~A~~~g 198 (212)
T 3rjv_A 164 ---AEYWAGMMFQQGEKGFIEPNKQK------ALHWLNVSCLEG 198 (212)
T ss_dssp ---HHHHHHHHHHHCBTTTBCCCHHH------HHHHHHHHHHHT
T ss_pred ---HHHHHHHHHHcCCCCCCCCCHHH------HHHHHHHHHHcC
Confidence 789999999865 3 5554 589999998873
No 120
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.23 E-value=6.7e-11 Score=117.08 Aligned_cols=139 Identities=11% Similarity=0.069 Sum_probs=108.2
Q ss_pred hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccc-cccchHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 013867 219 TGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSC-NMALEEVALAATFALGQLEAHMGNFGDAEEIL 297 (435)
Q Consensus 219 ~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~-~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~ 297 (435)
...+..++|.+|..+|+|++|+.+|++|+++.. . .+.+... ..........+++|||.+|..+|+|++|+..|
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p---~---~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~ 219 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLE---Y---ESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESC 219 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT---T---CCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh---c---cccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 445677789999999999999999999999931 1 1000000 00001112357789999999999999999999
Q ss_pred HHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhc
Q 013867 298 TRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARG 377 (435)
Q Consensus 298 ~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G 377 (435)
++||.+ .|+...++.++|.+|..+|++++| +..|++|+++. |+......+++.++..+|
T Consensus 220 ~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A------~~~~~~al~l~-------P~~~~a~~~l~~~~~~~~ 278 (336)
T 1p5q_A 220 NKALEL--------DSNNEKGLSRRGEAHLAVNDFELA------RADFQKVLQLY-------PNNKAAKTQLAVCQQRIR 278 (336)
T ss_dssp HHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHC-------SSCHHHHHHHHHHHHHHH
T ss_pred HHHHHh--------CCCcHHHHHHHHHHHHHCCCHHHH------HHHHHHHHHHC-------CCCHHHHHHHHHHHHHHH
Confidence 999998 466778999999999999998876 89999999985 344457788999999999
Q ss_pred CHHHHhh
Q 013867 378 GYAEALS 384 (435)
Q Consensus 378 ~yaeal~ 384 (435)
+|.++..
T Consensus 279 ~~~~a~~ 285 (336)
T 1p5q_A 279 RQLAREK 285 (336)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998844
No 121
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.23 E-value=8.2e-10 Score=94.18 Aligned_cols=143 Identities=10% Similarity=0.010 Sum_probs=107.5
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCch
Q 013867 105 SWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENY 184 (435)
Q Consensus 105 p~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~ 184 (435)
...+..+.++|..+..+|+|++|+..|++++.+ .|..
T Consensus 10 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----------------------~~~~--------------------- 46 (166)
T 1a17_A 10 LKRAEELKTQANDYFKAKDYENAIKFYSQAIEL----------------------NPSN--------------------- 46 (166)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------------STTC---------------------
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----------------------CCCC---------------------
Confidence 356788999999999999999999999887321 1110
Q ss_pred hchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCccc
Q 013867 185 KTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGS 264 (435)
Q Consensus 185 ~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~ 264 (435)
..+..++|.++..+|+|++|+.+|++++++. + .
T Consensus 47 -----------------------------------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--------~-~--- 79 (166)
T 1a17_A 47 -----------------------------------AIYYGNRSLAYLRTECYGYALGDATRAIELD--------K-K--- 79 (166)
T ss_dssp -----------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------T-T---
T ss_pred -----------------------------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------c-c---
Confidence 1123345667788999999999999999981 1 1
Q ss_pred ccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHH
Q 013867 265 CNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGL 344 (435)
Q Consensus 265 ~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~L 344 (435)
...++.++|.+|..+|+|++|...|++++.+ .|+++.+- ....++..+..+|++++| ...
T Consensus 80 --------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-----~p~~~~~~-~~~~~~~~~~~~~~~~~A------~~~ 139 (166)
T 1a17_A 80 --------YIKGYYRRAASNMALGKFRAALRDYETVVKV-----KPHDKDAK-MKYQECNKIVKQKAFERA------IAG 139 (166)
T ss_dssp --------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCHHHH-HHHHHHHHHHHHHHHHHH------HHH
T ss_pred --------cHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-----CCCCHHHH-HHHHHHHHHHHHHHHHHH------HHc
Confidence 1245789999999999999999999999976 45666532 334555568889997776 889
Q ss_pred HHHHHHHhcCCCC
Q 013867 345 YRRALEFLKAPPL 357 (435)
Q Consensus 345 y~rAL~I~k~~~~ 357 (435)
|+++..++.....
T Consensus 140 ~~~~~~~~~~~~~ 152 (166)
T 1a17_A 140 DEHKRSVVDSLDI 152 (166)
T ss_dssp HHHHHHHHHHCCC
T ss_pred ccchHHHhcccch
Confidence 9999988854433
No 122
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.22 E-value=6.3e-11 Score=105.04 Aligned_cols=169 Identities=16% Similarity=0.074 Sum_probs=111.3
Q ss_pred cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCc
Q 013867 104 ESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPEN 183 (435)
Q Consensus 104 Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~ 183 (435)
||+-...+..+|..+..+|+|++|+..|++++.+.+... .++..++.++..+|.+..|....+.
T Consensus 2 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~----~a~~~la~~~~~~g~~~~A~~~~~~------------ 65 (176)
T 2r5s_A 2 NASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRG----DVKLAKADCLLETKQFELAQELLAT------------ 65 (176)
T ss_dssp ----CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSH----HHHHHHHHHHHHTTCHHHHHHHHTT------------
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH----HHHHHHHHHHHHCCCHHHHHHHHHH------------
Confidence 344455678999999999999999999999976554432 2334445555555544333221111
Q ss_pred hhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHH-HHHhhchHHHHHHHHHHHHHHHHhcccCCCCCc
Q 013867 184 YKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEY-LHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTL 262 (435)
Q Consensus 184 ~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~-~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l 262 (435)
++. . .| .......++.+ +..+++..+|+..|++++++ .
T Consensus 66 ------------a~~-----~-----------~p-~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~-----------~- 104 (176)
T 2r5s_A 66 ------------IPL-----E-----------YQ-DNSYKSLIAKLELHQQAAESPELKRLEQELAA-----------N- 104 (176)
T ss_dssp ------------CCG-----G-----------GC-CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH-----------S-
T ss_pred ------------hhh-----c-----------cC-ChHHHHHHHHHHHHhhcccchHHHHHHHHHHh-----------C-
Confidence 110 0 01 11111112222 23445667789999999988 1
Q ss_pred ccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhH--HHHHHHHHHHHHHhhhhhhhhhhHH
Q 013867 263 GSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKV--GVVLTCLALMFRNKAMQEHSSALLI 340 (435)
Q Consensus 263 ~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~v--a~~L~nLA~ly~~qG~~e~A~~~~~ 340 (435)
|+ ....+.+||.+|..+|+|++|+..|++++.+ +|+. ...+.+||.+|..+|+.++|
T Consensus 105 ------P~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~a~~~l~~~~~~~g~~~~A----- 163 (176)
T 2r5s_A 105 ------PD--NFELACELAVQYNQVGRDEEALELLWNILKV--------NLGAQDGEVKKTFMDILSALGQGNAI----- 163 (176)
T ss_dssp ------TT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------CTTTTTTHHHHHHHHHHHHHCSSCHH-----
T ss_pred ------CC--CHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--------CcccChHHHHHHHHHHHHHhCCCCcH-----
Confidence 11 1246789999999999999999999999975 4443 45789999999999998776
Q ss_pred HHHHHHHHHHH
Q 013867 341 QEGLYRRALEF 351 (435)
Q Consensus 341 Ae~Ly~rAL~I 351 (435)
...|+++|.-
T Consensus 164 -~~~y~~al~~ 173 (176)
T 2r5s_A 164 -ASKYRRQLYS 173 (176)
T ss_dssp -HHHHHHHHHH
T ss_pred -HHHHHHHHHH
Confidence 8999999864
No 123
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.22 E-value=8.8e-12 Score=129.81 Aligned_cols=149 Identities=11% Similarity=0.005 Sum_probs=113.4
Q ss_pred HHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 013867 225 SYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKT 304 (435)
Q Consensus 225 ~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~ 304 (435)
++|..+..+|+|++|+.+|++|+++. +. ...+++++|.+|..+|+|++|+..|++|+++
T Consensus 11 ~lg~~~~~~g~~~~A~~~~~~Al~~~---------p~-----------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l- 69 (477)
T 1wao_1 11 TQANDYFKAKDYENAIKFYSQAIELN---------PS-----------NAIYYGNRSLAYLRTECYGYALGDATRAIEL- 69 (477)
T ss_dssp SSSSSTTTTTCHHHHHHHHHHHHHHC---------TT-----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhC---------Cc-----------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-
Confidence 34556778999999999999999981 11 1246789999999999999999999999987
Q ss_pred HHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHH--HHHhcCHHHH
Q 013867 305 EELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIV--ALARGGYAEA 382 (435)
Q Consensus 305 e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~--~~a~G~yaea 382 (435)
+|+.+.+++++|.+|..+|++++| +..|++|+++. |+++ ....+++.+ +..+|+|++|
T Consensus 70 -------~p~~~~~~~~lg~~~~~~g~~~eA------~~~~~~al~~~----p~~~---~~~~~l~~~~~~~~~g~~~~A 129 (477)
T 1wao_1 70 -------DKKYIKGYYRRAASNMALGKFRAA------LRDYETVVKVK----PHDK---DAKMKYQECNKIVKQKAFERA 129 (477)
T ss_dssp -------CTTCHHHHHHHHHHHHHHTCHHHH------HHHHHHHHHHS----TTCT---THHHHHHHHHHHHHHHHHCCC
T ss_pred -------CCCCHHHHHHHHHHHHHcCCHHHH------HHHHHHHHHhC----CCCH---HHHHHHHHHHHHHHHHHHHHH
Confidence 788888999999999999998776 89999999984 3333 355667777 8889999999
Q ss_pred hhHhh-----------hh-----------hhH----HHHHHHHHHHHhcccchhHHHH
Q 013867 383 LSVQQ-----------NR-----------KDE----GERMKRWAEAAWRNRRVSLAEA 414 (435)
Q Consensus 383 l~~~~-----------~r-----------~~e----ae~~~~~a~~~~~~~r~~l~~~ 414 (435)
+..++ +. ... .+.+.++.+.+.+.++++..++
T Consensus 130 ~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~itl~~l~~lie~l~~~~~l~e~~v 187 (477)
T 1wao_1 130 IAGDEHKRSVVDSLDIESMTIEDEYSGPKLEDGKVTISFMKELMQWYKDQKKLHRKCA 187 (477)
T ss_dssp ------CCSTTTCCTTSSCCCCTTCCSCCCGGGSCCHHHHHHHHHHHHTCCCCCHHHH
T ss_pred hccccccchhHhhhhhhhccccccccccccccccccHHHHHHHHHHHHcCCCCCHHHH
Confidence 98875 11 111 2455667777777778777666
No 124
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.21 E-value=2.2e-10 Score=110.44 Aligned_cols=167 Identities=14% Similarity=0.052 Sum_probs=129.2
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCch
Q 013867 105 SWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENY 184 (435)
Q Consensus 105 p~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~ 184 (435)
|+-...+..+|..+..+|++++|++.|++++.+ .|+
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~----------------------~P~---------------------- 149 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQL----------------------SNQ---------------------- 149 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------------TTS----------------------
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh----------------------CCc----------------------
Confidence 456678889999999999999999999987332 222
Q ss_pred hchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCccc
Q 013867 185 KTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGS 264 (435)
Q Consensus 185 ~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~ 264 (435)
...+..++|.+|..+|++++|+.+|+++++..
T Consensus 150 ----------------------------------~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~-------------- 181 (287)
T 3qou_A 150 ----------------------------------NGEIGLLLAETLIALNRSEDAEAVLXTIPLQD-------------- 181 (287)
T ss_dssp ----------------------------------CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--------------
T ss_pred ----------------------------------chhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--------------
Confidence 11233456778889999999999999997661
Q ss_pred ccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHH
Q 013867 265 CNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGL 344 (435)
Q Consensus 265 ~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~L 344 (435)
|+ ......+++..+..+|++++|+..|++++++ +|+-...+.+||.+|..+|++++| +..
T Consensus 182 ----p~--~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~--------~P~~~~~~~~la~~l~~~g~~~~A------~~~ 241 (287)
T 3qou_A 182 ----QD--TRYQGLVAQIELLXQAADTPEIQQLQQQVAE--------NPEDAALATQLALQLHQVGRNEEA------LEL 241 (287)
T ss_dssp ----CS--HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHH------HHH
T ss_pred ----cc--hHHHHHHHHHHHHhhcccCccHHHHHHHHhc--------CCccHHHHHHHHHHHHHcccHHHH------HHH
Confidence 11 1123457777888999999999999999986 677777899999999999998876 899
Q ss_pred HHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHHHhhHhhh
Q 013867 345 YRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQQN 388 (435)
Q Consensus 345 y~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~~~ 388 (435)
|++++.+. |++.+ .....+++.++...|+.++|...+.+
T Consensus 242 l~~~l~~~----p~~~~-~~a~~~l~~~~~~~g~~~~a~~~~r~ 280 (287)
T 3qou_A 242 LFGHLRXD----LTAAD-GQTRXTFQEILAALGTGDALASXYRR 280 (287)
T ss_dssp HHHHHHHC----TTGGG-GHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHhcc----ccccc-chHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 99999985 23322 44567889999999999988877744
No 125
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.21 E-value=1.2e-10 Score=122.15 Aligned_cols=131 Identities=11% Similarity=-0.004 Sum_probs=109.5
Q ss_pred cchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 013867 217 GCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEI 296 (435)
Q Consensus 217 ~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l 296 (435)
|....+..++|.+|..+|+|++|+.+|++++++. + . ...++.+||.+|..+|+|++|+.+
T Consensus 20 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------p-~-----------~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 20 PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH--------P-G-----------HPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS--------T-T-----------CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------C-C-----------CHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4445678889999999999999999999999871 1 1 124678999999999999999999
Q ss_pred HHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHh
Q 013867 297 LTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALAR 376 (435)
Q Consensus 297 ~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~ 376 (435)
|++++++ +|+....+.+||.+|..+|++++| +..|++++++. |+....+.+++.++..+
T Consensus 80 ~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A------~~~~~~al~~~-------p~~~~~~~~l~~~~~~~ 138 (568)
T 2vsy_A 80 LQQASDA--------APEHPGIALWLGHALEDAGQAEAA------AAAYTRAHQLL-------PEEPYITAQLLNWRRRL 138 (568)
T ss_dssp HHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHC-------TTCHHHHHHHHHHHHHT
T ss_pred HHHHHhc--------CCCCHHHHHHHHHHHHHcCCHHHH------HHHHHHHHHhC-------CCCHHHHHHHHHHHHHh
Confidence 9999997 466677899999999999998876 89999999985 33345677899999999
Q ss_pred ---cCHHHHhhHhhh
Q 013867 377 ---GGYAEALSVQQN 388 (435)
Q Consensus 377 ---G~yaeal~~~~~ 388 (435)
|+|++|+..+.+
T Consensus 139 ~~~g~~~~A~~~~~~ 153 (568)
T 2vsy_A 139 CDWRALDVLSAQVRA 153 (568)
T ss_dssp TCCTTHHHHHHHHHH
T ss_pred hccccHHHHHHHHHH
Confidence 999999887644
No 126
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.20 E-value=1.9e-10 Score=95.58 Aligned_cols=98 Identities=13% Similarity=-0.024 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013867 221 SAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRT 300 (435)
Q Consensus 221 ~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rA 300 (435)
......|..+..+|+|++|+.+|++++++. + . ....+.++|.+|..+|+|++|+..|+++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--------p-~-----------~~~~~~~~a~~~~~~~~~~~A~~~~~~a 64 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA--------P-E-----------DARGYSNRAAALAKLMSFPEAIADCNKA 64 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------T-T-----------CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------C-C-----------ChHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 455667888999999999999999999981 1 1 1246789999999999999999999999
Q ss_pred HHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 301 LTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 301 L~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
+.+ +|+...++.++|.+|..+|++++| ...|++++++.
T Consensus 65 l~~--------~p~~~~~~~~lg~~~~~~~~~~~A------~~~~~~al~~~ 102 (126)
T 3upv_A 65 IEK--------DPNFVRAYIRKATAQIAVKEYASA------LETLDAARTKD 102 (126)
T ss_dssp HHH--------CTTCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHH
T ss_pred HHh--------CCCcHHHHHHHHHHHHHHhCHHHH------HHHHHHHHHhC
Confidence 987 466677899999999999998776 89999999998
No 127
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.20 E-value=2e-10 Score=94.14 Aligned_cols=121 Identities=12% Similarity=0.022 Sum_probs=96.9
Q ss_pred cchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 013867 217 GCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEI 296 (435)
Q Consensus 217 ~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l 296 (435)
+....+...+|..+..+|+|++|+.+|++++++. + . ....+.++|.+|..+|+|++|+.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--------~-~-----------~~~~~~~la~~~~~~~~~~~A~~~ 72 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN--------P-K-----------DAKLYSNRAACYTKLLEFQLALKD 72 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC--------T-T-----------CHHHHHHHHHHHTTTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------C-C-----------cHHHHHHHHHHHHHhccHHHHHHH
Confidence 5556777888999999999999999999999761 1 1 124678999999999999999999
Q ss_pred HHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHh
Q 013867 297 LTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALAR 376 (435)
Q Consensus 297 ~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~ 376 (435)
|++++.+ .|+...++.++|.+|..+|++++| ...|++++++. |.......+++.++..+
T Consensus 73 ~~~a~~~--------~~~~~~~~~~la~~~~~~~~~~~A------~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~ 131 (133)
T 2lni_A 73 CEECIQL--------EPTFIKGYTRKAAALEAMKDYTKA------MDVYQKALDLD-------SSCKEAADGYQRCMMAQ 131 (133)
T ss_dssp HHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHC-------GGGTHHHHHHHHHHHHH
T ss_pred HHHHHHh--------CCCchHHHHHHHHHHHHHhhHHHH------HHHHHHHHHhC-------CCchHHHHHHHHHHHHh
Confidence 9999986 355567899999999999998776 89999999875 33334555677777666
Q ss_pred cC
Q 013867 377 GG 378 (435)
Q Consensus 377 G~ 378 (435)
|+
T Consensus 132 ~~ 133 (133)
T 2lni_A 132 YN 133 (133)
T ss_dssp TC
T ss_pred cC
Confidence 53
No 128
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.19 E-value=3.3e-10 Score=91.91 Aligned_cols=120 Identities=19% Similarity=0.192 Sum_probs=96.8
Q ss_pred hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013867 219 TGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILT 298 (435)
Q Consensus 219 ~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~ 298 (435)
...+...+|..+..+|+|++|+.+|++++.+. . . ....+.++|.+|..+|+|++|+..|+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~------~-----------~~~~~~~~a~~~~~~~~~~~A~~~~~ 70 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN---P------A-----------NAVYFCNRAAAYSKLGNYAGAVQDCE 70 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---T------T-----------CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC---C------C-----------CHHHHHHHHHHHHHhhchHHHHHHHH
Confidence 44566778889999999999999999999881 1 1 01357899999999999999999999
Q ss_pred HHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcC
Q 013867 299 RTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGG 378 (435)
Q Consensus 299 rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~ 378 (435)
+++.+ +|+...++.++|.+|..+|++++| ...|++++++. |+......+++.++...|+
T Consensus 71 ~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~A------~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 71 RAICI--------DPAYSKAYGRMGLALSSLNKHVEA------VAYYKKALELD-------PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHH--------CTTCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHS-------TTCHHHHHHHHHHHHHHTT
T ss_pred HHHhc--------CccCHHHHHHHHHHHHHhCCHHHH------HHHHHHHHhcC-------ccchHHHHHHHHHHHHHhc
Confidence 99986 455567899999999999998776 89999999884 2223456678888888777
Q ss_pred H
Q 013867 379 Y 379 (435)
Q Consensus 379 y 379 (435)
|
T Consensus 130 ~ 130 (131)
T 2vyi_A 130 A 130 (131)
T ss_dssp C
T ss_pred C
Confidence 5
No 129
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.18 E-value=3.5e-10 Score=100.29 Aligned_cols=124 Identities=13% Similarity=0.028 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHH
Q 013867 237 LLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVG 316 (435)
Q Consensus 237 ~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va 316 (435)
++.+.++++..++... +..-...+. ..|++ ..++.++|.+|..+|+|++|+.+|++++.+ +|+-.
T Consensus 6 ~~~~~~~~~l~~~~~~--~~~l~~al~---l~p~~--~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--------~P~~~ 70 (151)
T 3gyz_A 6 TENESISTAVIDAINS--GATLKDINA---IPDDM--MDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--------DFYNV 70 (151)
T ss_dssp ---CHHHHHHHHHHHT--SCCTGGGCC---SCHHH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCH
T ss_pred HHHHHHHHHHHHHHHC--CCCHHHHhC---CCHHH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCH
Confidence 4556666666666432 111111222 33553 357899999999999999999999999987 45666
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHHHhhHhhh
Q 013867 317 VVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQQN 388 (435)
Q Consensus 317 ~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~~~ 388 (435)
..+.+||.+|..+|+|++| +..|++|+++. |++| ....|++.++...|+|++|+..+.+
T Consensus 71 ~~~~~lg~~~~~~g~~~~A------i~~~~~al~l~----P~~~---~~~~~lg~~~~~lg~~~eA~~~~~~ 129 (151)
T 3gyz_A 71 DYIMGLAAIYQIKEQFQQA------ADLYAVAFALG----KNDY---TPVFHTGQCQLRLKAPLKAKECFEL 129 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHH------HHHHHHHHHHS----SSCC---HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHH------HHHHHHHHhhC----CCCc---HHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6899999999999998876 89999999986 3444 4677999999999999999887743
No 130
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.18 E-value=2.5e-10 Score=99.59 Aligned_cols=101 Identities=15% Similarity=0.084 Sum_probs=87.2
Q ss_pred chhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 013867 218 CTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEIL 297 (435)
Q Consensus 218 ~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~ 297 (435)
........+|.++..+|+|++|+.+|++++++. + . ....++++|.+|..+|+|++|+..|
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--------p-~-----------~~~~~~~l~~~~~~~g~~~~A~~~~ 68 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIA--------P-A-----------NPIYLSNRAAAYSASGQHEKAAEDA 68 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------T-T-----------CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------C-c-----------CHHHHHHHHHHHHHccCHHHHHHHH
Confidence 345567778999999999999999999999981 1 1 1246789999999999999999999
Q ss_pred HHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 298 TRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 298 ~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
++++.+ +|+...++.++|.+|..+|++++| ...|++++++.
T Consensus 69 ~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A------~~~~~~al~~~ 109 (164)
T 3sz7_A 69 ELATVV--------DPKYSKAWSRLGLARFDMADYKGA------KEAYEKGIEAE 109 (164)
T ss_dssp HHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHH
T ss_pred HHHHHh--------CCCCHHHHHHHHHHHHHccCHHHH------HHHHHHHHHhC
Confidence 999998 466678899999999999998876 89999999987
No 131
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.17 E-value=5e-10 Score=97.48 Aligned_cols=116 Identities=15% Similarity=0.067 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013867 221 SAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRT 300 (435)
Q Consensus 221 ~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rA 300 (435)
......|..+..+|+|++|+..|++|+.+....... +.+. .+.....+......++|+|.+|..+|+|++|...+++|
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILR-EKPG-EPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHT-SCTT-SHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccc-CCCC-HHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 445667888999999999999999999997543321 1110 00000001223457789999999999999999999999
Q ss_pred HHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 301 LTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 301 L~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
|.+ .|+...++.++|.+|..+|++++| ...|++++++.
T Consensus 90 l~~--------~p~~~~a~~~~g~~~~~~g~~~~A------~~~~~~al~l~ 127 (162)
T 3rkv_A 90 LKR--------EETNEKALFRRAKARIAAWKLDEA------EEDLKLLLRNH 127 (162)
T ss_dssp HHH--------STTCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHC
T ss_pred Hhc--------CCcchHHHHHHHHHHHHHhcHHHH------HHHHHHHHhcC
Confidence 998 566778999999999999998876 89999999984
No 132
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.17 E-value=2.1e-10 Score=100.04 Aligned_cols=102 Identities=14% Similarity=-0.009 Sum_probs=86.0
Q ss_pred cchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 013867 217 GCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEI 296 (435)
Q Consensus 217 ~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l 296 (435)
|....+...+|.++..+|+|++|+.+|++++.+- + . ....+.+||.+|..+|+|++|+..
T Consensus 18 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--------p-~-----------~~~~~~~lg~~~~~~g~~~~A~~~ 77 (148)
T 2vgx_A 18 SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD--------H-Y-----------DSRFFLGLGACRQAMGQYDLAIHS 77 (148)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------T-T-----------CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC--------c-c-----------cHHHHHHHHHHHHHHhhHHHHHHH
Confidence 4445667788999999999999999999999881 1 1 114568999999999999999999
Q ss_pred HHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 297 LTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 297 ~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
|++|+.+ .|++| ..+.++|.+|..+|++++| +..|++++++.
T Consensus 78 ~~~al~l-----~p~~~---~~~~~lg~~~~~~g~~~~A------~~~~~~al~~~ 119 (148)
T 2vgx_A 78 YSYGAVM-----DIXEP---RFPFHAAECLLQXGELAEA------ESGLFLAQELI 119 (148)
T ss_dssp HHHHHHH-----STTCT---HHHHHHHHHHHHTTCHHHH------HHHHHHHHHHH
T ss_pred HHHHHhc-----CCCCc---hHHHHHHHHHHHcCCHHHH------HHHHHHHHHHC
Confidence 9999987 35555 5689999999999998876 89999999998
No 133
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.16 E-value=8.4e-11 Score=121.43 Aligned_cols=169 Identities=12% Similarity=0.157 Sum_probs=119.3
Q ss_pred hcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhc
Q 013867 80 ESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQL 159 (435)
Q Consensus 80 G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~ 159 (435)
++|++|+..|++++. ..|..+..+.++|..|..+|+|++|+..|++++.+....
T Consensus 248 ~~~~~A~~~~~~~~~--------~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~------------------ 301 (457)
T 1kt0_A 248 KSFEKAKESWEMDTK--------EKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEME------------------ 301 (457)
T ss_dssp EEEECCCCGGGSCHH--------HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTC------------------
T ss_pred hhcccCcchhhcCHH--------HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc------------------
Confidence 345566655555443 357899999999999999999999999999996543211
Q ss_pred CCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchHHH
Q 013867 160 GQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLLA 239 (435)
Q Consensus 160 g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eA 239 (435)
+. . .++ + ...+. +....+.+++|.+|..+|+|++|
T Consensus 302 -~~-~-------------------~~~-~-----~~~~~------------------~~~~~~~~nla~~~~~~g~~~~A 336 (457)
T 1kt0_A 302 -YG-L-------------------SEK-E-----SKASE------------------SFLLAAFLNLAMCYLKLREYTKA 336 (457)
T ss_dssp -CS-C-------------------CHH-H-----HHHHH------------------HHHHHHHHHHHHHHHHTTCHHHH
T ss_pred -cc-C-------------------ChH-H-----HHHHH------------------HHHHHHHHHHHHHHHHhcCHHHH
Confidence 00 0 000 0 00000 11224567789999999999999
Q ss_pred HHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHH
Q 013867 240 KKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVL 319 (435)
Q Consensus 240 e~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L 319 (435)
+..|++||++. + . ...+++++|.+|..+|+|++|...|++|+++ .|+-..++
T Consensus 337 ~~~~~~al~~~--------p-~-----------~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--------~P~~~~a~ 388 (457)
T 1kt0_A 337 VECCDKALGLD--------S-A-----------NEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--------NPQNKAAR 388 (457)
T ss_dssp HHHHHHHHHHS--------T-T-----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------C----CHH
T ss_pred HHHHHHHHhcC--------C-c-----------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHH
Confidence 99999999981 1 1 1257899999999999999999999999986 56667889
Q ss_pred HHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 320 TCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 320 ~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
.+|+.+|..+|+++++. ..+|++.+.-+
T Consensus 389 ~~l~~~~~~~~~~~~a~-----~~~~~~~f~k~ 416 (457)
T 1kt0_A 389 LQISMCQKKAKEHNERD-----RRIYANMFKKF 416 (457)
T ss_dssp HHHHHHHHHHHHHHHHH-----HHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHH-----HHHHHHHHhhh
Confidence 99999999999988762 35666665444
No 134
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.15 E-value=1.1e-09 Score=89.71 Aligned_cols=126 Identities=10% Similarity=0.070 Sum_probs=99.9
Q ss_pred CCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhc
Q 013867 100 GQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKH 179 (435)
Q Consensus 100 lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~ 179 (435)
.++..|.....+.++|..|..+|+|++|+..|++++.+ .+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~----------------------~~~~---------------- 49 (133)
T 2lni_A 8 HSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKR----------------------NPKD---------------- 49 (133)
T ss_dssp TCCSSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT----------------------CTTC----------------
T ss_pred CCCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----------------------CCCc----------------
Confidence 34677899999999999999999999999999987321 1110
Q ss_pred CCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCC
Q 013867 180 KPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDM 259 (435)
Q Consensus 180 ~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~ 259 (435)
..+..++|.+|..+|+|++|+.+|++++++. .
T Consensus 50 ----------------------------------------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~---~----- 81 (133)
T 2lni_A 50 ----------------------------------------AKLYSNRAACYTKLLEFQLALKDCEECIQLE---P----- 81 (133)
T ss_dssp ----------------------------------------HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC---T-----
T ss_pred ----------------------------------------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---C-----
Confidence 0123345667788999999999999999881 1
Q ss_pred CCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhh
Q 013867 260 NTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAM 331 (435)
Q Consensus 260 ~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~ 331 (435)
. ....+.++|.+|..+|+|++|+.+|++++.+ +|.....+.+++.+|..+|+
T Consensus 82 -~-----------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 82 -T-----------FIKGYTRKAAALEAMKDYTKAMDVYQKALDL--------DSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp -T-----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CGGGTHHHHHHHHHHHHHTC
T ss_pred -C-----------chHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhcC
Confidence 1 1145789999999999999999999999987 56677788999999988774
No 135
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.14 E-value=3.3e-10 Score=101.84 Aligned_cols=136 Identities=7% Similarity=-0.014 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccc--cccchHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013867 221 SAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSC--NMALEEVALAATFALGQLEAHMGNFGDAEEILT 298 (435)
Q Consensus 221 ~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~--~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~ 298 (435)
.....+|..+..+|+|++|+.+|++++.+.. . .+..-.. ...........+.++|.+|..+|+|++|...|+
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 112 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFI---H---TEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHAS 112 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTT---T---CTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh---c---ccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 3455678889999999999999999999831 1 1100000 000001112467899999999999999999999
Q ss_pred HHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcC
Q 013867 299 RTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGG 378 (435)
Q Consensus 299 rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~ 378 (435)
+++.+ +|+...++.++|.+|..+|++++| +..|++++++. |+......+++.++...|+
T Consensus 113 ~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A------~~~~~~al~~~-------p~~~~~~~~l~~~~~~~~~ 171 (198)
T 2fbn_A 113 KVLKI--------DKNNVKALYKLGVANMYFGFLEEA------KENLYKAASLN-------PNNLDIRNSYELCVNKLKE 171 (198)
T ss_dssp HHHHH--------STTCHHHHHHHHHHHHHHTCHHHH------HHHHHHHHHHS-------TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHh--------CcccHHHHHHHHHHHHHcccHHHH------HHHHHHHHHHC-------CCcHHHHHHHHHHHHHHHH
Confidence 99997 566778899999999999998876 89999999984 3334455667777777666
Q ss_pred HHHHh
Q 013867 379 YAEAL 383 (435)
Q Consensus 379 yaeal 383 (435)
+.++.
T Consensus 172 ~~~~~ 176 (198)
T 2fbn_A 172 ARKKD 176 (198)
T ss_dssp HHC--
T ss_pred HHHHH
Confidence 66544
No 136
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.14 E-value=1.9e-10 Score=112.99 Aligned_cols=224 Identities=14% Similarity=0.053 Sum_probs=155.0
Q ss_pred HHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHH-------HHHHHHcCCHHHHHHHHH
Q 013867 60 PVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAM-------STLLYESGNYVEAIEKLQ 132 (435)
Q Consensus 60 ~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nL-------a~ly~~qGky~eA~~l~~ 132 (435)
+...+|-..|+.+ + .+++++|.+.|.+++.+. |+-+...+++ +.++...+++.+++..++
T Consensus 5 ~~~~~~~~~~~~~-~----~~d~~~A~~~F~~a~~~d--------P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~ 71 (282)
T 4f3v_A 5 DRLASLFESAVSM-L----PMSEARSLDLFTEITNYD--------ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLS 71 (282)
T ss_dssp HHHHHHHHHHHHH-T----TTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHH
T ss_pred HHHHHHHHHHhcc-c----CCCHHHHHHHHHHHHHhC--------hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHH
Confidence 3456777788876 3 478999999999999765 7788899999 899999999999999999
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHH--HhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcc
Q 013867 133 KVENFKNSILGVRVAAMEALAGLY--LQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLES 210 (435)
Q Consensus 133 ral~i~e~~L~i~vaale~L~g~~--~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~ 210 (435)
+++.+....++.++. +.|+| .+. +-...-.+.-..+.++...+. |++|..++... +-+
T Consensus 72 ~~l~l~p~~l~a~~~----~~g~y~~~~~-~v~~r~dl~LayA~~L~~~g~--y~eA~~~l~~~---------~~~---- 131 (282)
T 4f3v_A 72 GSVQISMSTLNARIA----IGGLYGDITY-PVTSPLAITMGFAACEAAQGN--YADAMEALEAA---------PVA---- 131 (282)
T ss_dssp HTTTCCGGGGCCEEE----CCTTTCCCEE-ECSSHHHHHHHHHHHHHHHTC--HHHHHHHHTSS---------CCT----
T ss_pred HHhcCChhhhhhhhc----cCCccccccc-ccCCHhHHHHHHHHHHHHCCC--HHHHHHHHHHH---------Hhc----
Confidence 998877776643221 11222 000 001111122223334444342 55443332111 101
Q ss_pred cccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCH
Q 013867 211 GLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNF 290 (435)
Q Consensus 211 a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y 290 (435)
+|... +..+++.++...|+|++|+.+|++++.. . ++. ....+..+||.++..+|+|
T Consensus 132 -----~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~-------~-d~~----------~~~~a~~~LG~al~~LG~~ 187 (282)
T 4f3v_A 132 -----GSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKW-------P-DKF----------LAGAAGVAHGVAAANLALF 187 (282)
T ss_dssp -----TCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGC-------S-CHH----------HHHHHHHHHHHHHHHTTCH
T ss_pred -----CCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhcc-------C-Ccc----------cHHHHHHHHHHHHHHCCCH
Confidence 13333 6677888999999999999999865433 0 101 1123568999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhCCCChh-HHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 291 GDAEEILTRTLTKTEELFGSHHPK-VGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 291 ~eAe~l~~rAL~I~e~~lG~~HP~-va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
++|+..|++++. |+.-|. ....+.++|.++..+|+.++| ..+|++++++.
T Consensus 188 ~eAl~~l~~a~~------g~~~P~~~~da~~~~glaL~~lGr~deA------~~~l~~a~a~~ 238 (282)
T 4f3v_A 188 TEAERRLTEAND------SPAGEACARAIAWYLAMARRSQGNESAA------VALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHT------STTTTTTHHHHHHHHHHHHHHHTCHHHH------HHHHHHHHHHS
T ss_pred HHHHHHHHHHhc------CCCCccccHHHHHHHHHHHHHcCCHHHH------HHHHHHHHhcC
Confidence 999999999873 554387 778999999999999998876 89999999875
No 137
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.14 E-value=1e-09 Score=88.24 Aligned_cols=117 Identities=18% Similarity=0.237 Sum_probs=91.3
Q ss_pred hHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013867 220 GSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTR 299 (435)
Q Consensus 220 ~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~r 299 (435)
..+...+|.++...|+|++|+.+|++++.+. . . ...+++++|.+|..+|+|++|..+|++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~------~-----------~~~~~~~la~~~~~~~~~~~A~~~~~~ 68 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD---P------N-----------NAEAWYNLGNAYYKQGDYDEAIEYYQK 68 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---T------T-----------CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---c------C-----------cHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3456678889999999999999999999871 1 1 113578999999999999999999999
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhc
Q 013867 300 TLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARG 377 (435)
Q Consensus 300 AL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G 377 (435)
++.+ +|+...++.++|.+|..+|++++| ...|++++++. |++ .....+++.++..+|
T Consensus 69 ~~~~--------~~~~~~~~~~la~~~~~~~~~~~A------~~~~~~~~~~~----~~~---~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 69 ALEL--------DPNNAEAWYNLGNAYYKQGDYDEA------IEYYQKALELD----PNN---AEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHH--------CTTCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHC----TTC---HHHHHHHHHHHHHHC
T ss_pred HHHh--------CCccHHHHHHHHHHHHHhcCHHHH------HHHHHHHHHhC----CCc---HHHHHHHHHHHHhcc
Confidence 9976 344567889999999999998776 89999999874 233 334455666665443
No 138
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.14 E-value=8.2e-10 Score=89.73 Aligned_cols=105 Identities=12% Similarity=0.141 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013867 221 SAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRT 300 (435)
Q Consensus 221 ~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rA 300 (435)
.....+|.++..+|+|++|+.+|++++.+. + . ....+.++|.+|..+|+|++|..+|+++
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--------~-~-----------~~~~~~~la~~~~~~~~~~~A~~~~~~~ 64 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD--------P-T-----------NMTYITNQAAVYFEKGDYNKCRELCEKA 64 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------T-T-----------CHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--------C-c-----------cHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 456678889999999999999999999881 1 1 1145789999999999999999999999
Q ss_pred HHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 301 LTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 301 L~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
+.+... .+++++....++.++|.+|..+|++++| ...|++++++.
T Consensus 65 ~~~~~~-~~~~~~~~~~~~~~la~~~~~~~~~~~A------~~~~~~~~~~~ 109 (131)
T 1elr_A 65 IEVGRE-NREDYRQIAKAYARIGNSYFKEEKYKDA------IHFYNKSLAEH 109 (131)
T ss_dssp HHHHHH-STTCHHHHHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHC
T ss_pred Hhhccc-cchhHHHHHHHHHHHHHHHHHhccHHHH------HHHHHHHHHhC
Confidence 998764 3667777799999999999999998776 89999999864
No 139
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.13 E-value=8.7e-10 Score=90.90 Aligned_cols=103 Identities=15% Similarity=0.098 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013867 222 AALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTL 301 (435)
Q Consensus 222 ~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL 301 (435)
+...+|..+..+|+|++|+.+|++++.+. +++ .. ...++.++|.+|..+|+|++|...|++++
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------p~~-~~----------~~~~~~~lg~~~~~~~~~~~A~~~~~~~~ 66 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELY------PNG-VY----------TPNALYWLGESYYATRNFQLAEAQFRDLV 66 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC------SSS-TT----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHC------CCC-cc----------cHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 34567888899999999999999999871 111 11 12467899999999999999999999999
Q ss_pred HHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 302 TKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 302 ~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
.+ .|++|.+..++.++|.+|..+|++++| ...|++++++.
T Consensus 67 ~~-----~p~~~~~~~~~~~la~~~~~~g~~~~A------~~~~~~~~~~~ 106 (129)
T 2xev_A 67 SR-----YPTHDKAAGGLLKLGLSQYGEGKNTEA------QQTLQQVATQY 106 (129)
T ss_dssp HH-----CTTSTTHHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHS
T ss_pred HH-----CCCCcccHHHHHHHHHHHHHcCCHHHH------HHHHHHHHHHC
Confidence 85 588888899999999999999998876 89999999876
No 140
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.13 E-value=2e-09 Score=110.73 Aligned_cols=28 Identities=4% Similarity=-0.086 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHhh---chHHHHHHHHHHHHH
Q 013867 222 AALSYGEYLHATR---NFLLAKKFYQKVIEV 249 (435)
Q Consensus 222 ~a~~la~~~~~~G---~y~eAe~ly~rAL~I 249 (435)
+..++|.+|..+| ++++|+.+|++|.+.
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~ 208 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSR 208 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHC
Confidence 5556666666677 777777777777654
No 141
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.12 E-value=2.9e-09 Score=88.31 Aligned_cols=123 Identities=13% Similarity=0.048 Sum_probs=92.9
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCch
Q 013867 105 SWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENY 184 (435)
Q Consensus 105 p~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~ 184 (435)
|..+..+.++|..+..+|+|++|+..|++++.+ .|..
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~----------------------~p~~--------------------- 37 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR----------------------APED--------------------- 37 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------------CTTC---------------------
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh----------------------CCCC---------------------
Confidence 567889999999999999999999999987332 1210
Q ss_pred hchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCccc
Q 013867 185 KTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGS 264 (435)
Q Consensus 185 ~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~ 264 (435)
..+..++|.+|..+|+|++|+..|++++++. + .
T Consensus 38 -----------------------------------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--------p-~--- 70 (126)
T 3upv_A 38 -----------------------------------ARGYSNRAAALAKLMSFPEAIADCNKAIEKD--------P-N--- 70 (126)
T ss_dssp -----------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------T-T---
T ss_pred -----------------------------------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------C-C---
Confidence 1233456777889999999999999999981 1 1
Q ss_pred ccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHH
Q 013867 265 CNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFR 327 (435)
Q Consensus 265 ~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~ 327 (435)
...++.++|.+|..+|+|++|...|++++.+.-..- +.|........|+.+..
T Consensus 71 --------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~--~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 71 --------FVRAYIRKATAQIAVKEYASALETLDAARTKDAEVN--NGSSAREIDQLYYKASQ 123 (126)
T ss_dssp --------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH--TTTTHHHHHHHHHHHHH
T ss_pred --------cHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccC--CchhHHHHHHHHHHHHH
Confidence 124678999999999999999999999999975442 33555555666665544
No 142
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.12 E-value=1.1e-09 Score=98.37 Aligned_cols=144 Identities=13% Similarity=0.160 Sum_probs=107.2
Q ss_pred CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCC
Q 013867 102 LAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKP 181 (435)
Q Consensus 102 ~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~ 181 (435)
.+.+..+..+.++|..+..+|+|++|++.|++++.+.... ++....
T Consensus 32 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~-------------------~~~~~~--------------- 77 (198)
T 2fbn_A 32 EEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHT-------------------EEWDDQ--------------- 77 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTC-------------------TTCCCH---------------
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-------------------cccchh---------------
Confidence 3456788999999999999999999999999986543221 110000
Q ss_pred CchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCC
Q 013867 182 ENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNT 261 (435)
Q Consensus 182 ~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~ 261 (435)
.+......+. ..+..++|.+|..+|+|++|+.+|++++++. + .
T Consensus 78 -------~~~~~~~~~~---------------------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------p-~ 120 (198)
T 2fbn_A 78 -------ILLDKKKNIE---------------------ISCNLNLATCYNKNKDYPKAIDHASKVLKID--------K-N 120 (198)
T ss_dssp -------HHHHHHHHHH---------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------T-T
T ss_pred -------hHHHHHHHHH---------------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------c-c
Confidence 0000001110 1345667889999999999999999999981 1 1
Q ss_pred cccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhh
Q 013867 262 LGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHS 335 (435)
Q Consensus 262 l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A 335 (435)
...++.++|.+|..+|+|++|...|++++.+ +|+...++.+++.++..+++++++
T Consensus 121 -----------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~~ 175 (198)
T 2fbn_A 121 -----------NVKALYKLGVANMYFGFLEEAKENLYKAASL--------NPNNLDIRNSYELCVNKLKEARKK 175 (198)
T ss_dssp -----------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHHHHHC-
T ss_pred -----------cHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHHHHHHHH
Confidence 1246789999999999999999999999988 566677899999999999998776
No 143
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.11 E-value=9.7e-10 Score=91.56 Aligned_cols=102 Identities=14% Similarity=-0.015 Sum_probs=87.2
Q ss_pred chhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 013867 218 CTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEIL 297 (435)
Q Consensus 218 ~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~ 297 (435)
........+|.++..+|+|++|+.+|++++.+. + . ....++++|.+|..+|+|++|...|
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--------~-~-----------~~~~~~~l~~~~~~~~~~~~A~~~~ 66 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN--------P-L-----------VAVYYTNRALCYLKMQQPEQALADC 66 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------T-T-----------CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC--------c-C-----------cHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 345677788999999999999999999999981 1 1 1246789999999999999999999
Q ss_pred HHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhc
Q 013867 298 TRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLK 353 (435)
Q Consensus 298 ~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k 353 (435)
++++.+ +|+...++.++|.+|..+|++++| +..|++++++..
T Consensus 67 ~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~A------~~~~~~a~~~~p 108 (137)
T 3q49_B 67 RRALEL--------DGQSVKAHFFLGQCQLEMESYDEA------IANLQRAYSLAK 108 (137)
T ss_dssp HHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHHH
T ss_pred HHHHHh--------CchhHHHHHHHHHHHHHHhhHHHH------HHHHHHHHHHCh
Confidence 999987 355667899999999999998776 899999999984
No 144
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.11 E-value=6.3e-10 Score=95.24 Aligned_cols=102 Identities=13% Similarity=0.023 Sum_probs=85.9
Q ss_pred cchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 013867 217 GCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEI 296 (435)
Q Consensus 217 ~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l 296 (435)
|........+|..+..+|+|++|+.+|++++.+. + + ....+.+||.+|..+|+|++|...
T Consensus 15 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--------p----------~--~~~~~~~lg~~~~~~g~~~~A~~~ 74 (142)
T 2xcb_A 15 EDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLD--------H----------Y--DARYFLGLGACRQSLGLYEQALQS 74 (142)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------T----------T--CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC--------C----------c--cHHHHHHHHHHHHHHhhHHHHHHH
Confidence 4455667778999999999999999999999881 1 1 114578999999999999999999
Q ss_pred HHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 297 LTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 297 ~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
|++|+.+ .|++|. .+.++|.+|..+|++++| +..|++++++.
T Consensus 75 ~~~al~~-----~p~~~~---~~~~lg~~~~~~g~~~~A------~~~~~~al~~~ 116 (142)
T 2xcb_A 75 YSYGALM-----DINEPR---FPFHAAECHLQLGDLDGA------ESGFYSARALA 116 (142)
T ss_dssp HHHHHHH-----CTTCTH---HHHHHHHHHHHTTCHHHH------HHHHHHHHHHH
T ss_pred HHHHHhc-----CCCCcH---HHHHHHHHHHHcCCHHHH------HHHHHHHHHhC
Confidence 9999986 456654 679999999999998876 89999999997
No 145
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.10 E-value=6.1e-09 Score=107.91 Aligned_cols=215 Identities=13% Similarity=0.089 Sum_probs=137.1
Q ss_pred HHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHH-hhhhhHHHHHH
Q 013867 83 SQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYE-------SGNYV-------EAIEKLQKVEN-FKNSILGVRVA 147 (435)
Q Consensus 83 ~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~-------qGky~-------eA~~l~~ral~-i~e~~L~i~va 147 (435)
.+|+.+|++++... |.....+.++|.++.. +|+++ +|+..|++++. +....
T Consensus 255 ~~a~~~y~~al~~~--------p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~------ 320 (530)
T 2ooe_A 255 KRVMFAYEQCLLVL--------GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKN------ 320 (530)
T ss_dssp HHHHHHHHHHHHHH--------TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSC------
T ss_pred HHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCccc------
Confidence 58899999999764 4456778888998886 89988 88888888854 32211
Q ss_pred HHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHH
Q 013867 148 AMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYG 227 (435)
Q Consensus 148 ale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la 227 (435)
..+....+.+....+. ++++..++.++ +. ..+ .+...+..+++
T Consensus 321 ------------------~~l~~~~~~~~~~~g~--~~~A~~~~~~a--l~-----~~p----------~~~~~~~~~~~ 363 (530)
T 2ooe_A 321 ------------------MLLYFAYADYEESRMK--YEKVHSIYNRL--LA-----IED----------IDPTLVYIQYM 363 (530)
T ss_dssp ------------------HHHHHHHHHHHHHTTC--HHHHHHHHHHH--HH-----SSS----------SCHHHHHHHHH
T ss_pred ------------------HHHHHHHHHHHHhcCC--HHHHHHHHHHH--hC-----ccc----------cCchHHHHHHH
Confidence 1222333444444442 44444443332 22 111 11123667788
Q ss_pred HHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHHHHH
Q 013867 228 EYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQL-EAHMGNFGDAEEILTRTLTKTEE 306 (435)
Q Consensus 228 ~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~l-y~~qG~y~eAe~l~~rAL~I~e~ 306 (435)
.++..+|++++|..+|++|+++ ++... ..+...+.+ +..+|++++|..+|+++|.+.
T Consensus 364 ~~~~~~~~~~~A~~~~~~Al~~---------~~~~~-----------~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-- 421 (530)
T 2ooe_A 364 KFARRAEGIKSGRMIFKKARED---------ARTRH-----------HVYVTAALMEYYCSKDKSVAFKIFELGLKKY-- 421 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC---------TTCCT-----------HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH--
T ss_pred HHHHHhcCHHHHHHHHHHHHhc---------cCCch-----------HHHHHHHHHHHHHcCChhHHHHHHHHHHHHC--
Confidence 8999999999999999999875 11100 112233333 557999999999999999874
Q ss_pred hhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhh-ccHHHHHHHhcCHHHHhhH
Q 013867 307 LFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKV-DRTDIVALARGGYAEALSV 385 (435)
Q Consensus 307 ~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l-~nla~~~~a~G~yaeal~~ 385 (435)
|++| ..+.+++.++..+|+.++| ..+|+||+... +..|+....+ ..........|+++++..+
T Consensus 422 ---p~~~---~~~~~~~~~~~~~g~~~~A------r~~~~~al~~~----~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~ 485 (530)
T 2ooe_A 422 ---GDIP---EYVLAYIDYLSHLNEDNNT------RVLFERVLTSG----SLPPEKSGEIWARFLAFESNIGDLASILKV 485 (530)
T ss_dssp ---TTCH---HHHHHHHHHHTTTTCHHHH------HHHHHHHHHSC----CSCGGGCHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred ---CCCH---HHHHHHHHHHHhCCCHhhH------HHHHHHHHhcc----CCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4454 5678999999999998776 89999998864 3334322222 1223334455666655444
Q ss_pred h
Q 013867 386 Q 386 (435)
Q Consensus 386 ~ 386 (435)
.
T Consensus 486 ~ 486 (530)
T 2ooe_A 486 E 486 (530)
T ss_dssp H
T ss_pred H
Confidence 3
No 146
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.09 E-value=3.5e-09 Score=85.74 Aligned_cols=125 Identities=11% Similarity=0.004 Sum_probs=97.1
Q ss_pred CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCC
Q 013867 102 LAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKP 181 (435)
Q Consensus 102 ~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~ 181 (435)
...|..+..+..+|..+..+|+|++|++.|++++.+ .|..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----------------------~~~~------------------ 45 (131)
T 2vyi_A 6 EEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIEL----------------------NPAN------------------ 45 (131)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------------CTTC------------------
T ss_pred hcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHc----------------------CCCC------------------
Confidence 445778899999999999999999999999887321 1110
Q ss_pred CchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCC
Q 013867 182 ENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNT 261 (435)
Q Consensus 182 ~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~ 261 (435)
..+...+|.++..+|+|++|+.+|++++.+. . .
T Consensus 46 --------------------------------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~------~ 78 (131)
T 2vyi_A 46 --------------------------------------AVYFCNRAAAYSKLGNYAGAVQDCERAICID---P------A 78 (131)
T ss_dssp --------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---T------T
T ss_pred --------------------------------------HHHHHHHHHHHHHhhchHHHHHHHHHHHhcC---c------c
Confidence 0122335667788999999999999999871 1 1
Q ss_pred cccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhh
Q 013867 262 LGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQ 332 (435)
Q Consensus 262 l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~ 332 (435)
....+.++|.+|..+|+|++|...|++++.+ .|+....+.+++.+|..+|++
T Consensus 79 -----------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 79 -----------YSKAYGRMGLALSSLNKHVEAVAYYKKALEL--------DPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp -----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHTTC
T ss_pred -----------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--------CccchHHHHHHHHHHHHHhcC
Confidence 0145789999999999999999999999987 344556789999999999885
No 147
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.09 E-value=8.4e-09 Score=89.62 Aligned_cols=145 Identities=14% Similarity=0.109 Sum_probs=104.7
Q ss_pred CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCC
Q 013867 103 AESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPE 182 (435)
Q Consensus 103 ~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~ 182 (435)
+....+..+.++|..|..+|+|++|+..|++++.+...... ...+.+
T Consensus 6 e~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~--------------~~~~~~------------------- 52 (162)
T 3rkv_A 6 DKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLIL--------------REKPGE------------------- 52 (162)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH--------------TSCTTS-------------------
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcc--------------cCCCCH-------------------
Confidence 44578899999999999999999999999999665322110 001110
Q ss_pred chhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCc
Q 013867 183 NYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTL 262 (435)
Q Consensus 183 ~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l 262 (435)
+. +. .+ .|....+..++|.+|..+|+|++|+..|++||++ . + .
T Consensus 53 ------~~--~~--------~~-----------~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~---~-----p-~- 95 (162)
T 3rkv_A 53 ------PE--WV--------EL-----------DRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR---E-----E-T- 95 (162)
T ss_dssp ------HH--HH--------HH-----------HHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---S-----T-T-
T ss_pred ------HH--HH--------HH-----------HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc---C-----C-c-
Confidence 00 00 00 1233456778899999999999999999999998 1 1 1
Q ss_pred ccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHH-HHHHHHHHHHHHhhhhhhh
Q 013867 263 GSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVG-VVLTCLALMFRNKAMQEHS 335 (435)
Q Consensus 263 ~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va-~~L~nLA~ly~~qG~~e~A 335 (435)
...++.++|.+|..+|+|++|...|++|+.+ .|+-. .....|+.+.....++.+.
T Consensus 96 ----------~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--------~p~~~~~~~~~l~~~~~~~~~~~~~ 151 (162)
T 3rkv_A 96 ----------NEKALFRRAKARIAAWKLDEAEEDLKLLLRN--------HPAAASVVAREMKIVTERRAEKKAD 151 (162)
T ss_dssp ----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CGGGHHHHHHHHHHHHHHHHHHTTS
T ss_pred ----------chHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 1256889999999999999999999999998 45555 5567777777777666543
No 148
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.08 E-value=7.3e-09 Score=106.45 Aligned_cols=183 Identities=13% Similarity=0.071 Sum_probs=119.4
Q ss_pred HHHHHHHHHHHcC---CHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcC--CCch
Q 013867 110 SLLAMSTLLYESG---NYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHK--PENY 184 (435)
Q Consensus 110 ~l~nLa~ly~~qG---ky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~--~~~~ 184 (435)
.+++||.+|..+| ++++|++.|+++.+. |+.. +.. ..++..++.... +.++
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~----------------------g~~~-a~~-~~~Lg~~y~~g~~~~~d~ 233 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSR----------------------GTVT-AQR-VDSVARVLGDATLGTPDE 233 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT----------------------TCSC-HHH-HHHHHHHHTCGGGSSCCH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHC----------------------CCHH-HHH-HHHHHHHHhCCCCCCCCH
Confidence 7888999999999 999999999887432 3322 111 112223332211 1123
Q ss_pred hchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHH-H--HHhhchHHHHHHHHHHHHHHHHhcccCCCCC
Q 013867 185 KTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEY-L--HATRNFLLAKKFYQKVIEVLAEQKDFSDMNT 261 (435)
Q Consensus 185 ~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~-~--~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~ 261 (435)
++ ++..+.++ . .. ...+..++|.+ | ...|++++|..+|++|++. + .
T Consensus 234 ~~--A~~~~~~a-------a-~g-----------~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-----g-----~ 282 (452)
T 3e4b_A 234 KT--AQALLEKI-------A-PG-----------YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-----D-----Q 282 (452)
T ss_dssp HH--HHHHHHHH-------G-GG-----------STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-----T-----C
T ss_pred HH--HHHHHHHH-------c-CC-----------CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-----C-----C
Confidence 32 22222222 1 11 23567788887 5 5799999999999999854 1 1
Q ss_pred cccccccchHHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHH----hhhh
Q 013867 262 LGSCNMALEEVALAATFALGQLEAHMG-----NFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRN----KAMQ 332 (435)
Q Consensus 262 l~~~~~~~~~~~l~~l~nLa~ly~~qG-----~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~----qG~~ 332 (435)
..+.++||.+|. .| ++++|..+|++|. +.| ..+++|||.+|.. ..++
T Consensus 283 ------------~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa--------~g~---~~A~~~Lg~~y~~G~g~~~d~ 338 (452)
T 3e4b_A 283 ------------PRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV--------GRE---VAADYYLGQIYRRGYLGKVYP 338 (452)
T ss_dssp ------------HHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT--------TTC---HHHHHHHHHHHHTTTTSSCCH
T ss_pred ------------HHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh--------CCC---HHHHHHHHHHHHCCCCCCcCH
Confidence 146789999998 77 9999999999987 344 4689999999987 2254
Q ss_pred hhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHH----hcCHHHHhhHh
Q 013867 333 EHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALA----RGGYAEALSVQ 386 (435)
Q Consensus 333 e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a----~G~yaeal~~~ 386 (435)
+ +|..+|++|.+ .++++ ...|++.+|.. ..++.+|..++
T Consensus 339 ~------~A~~~~~~Aa~------~g~~~---A~~~Lg~~y~~G~g~~~d~~~A~~~~ 381 (452)
T 3e4b_A 339 Q------KALDHLLTAAR------NGQNS---ADFAIAQLFSQGKGTKPDPLNAYVFS 381 (452)
T ss_dssp H------HHHHHHHHHHT------TTCTT---HHHHHHHHHHSCTTBCCCHHHHHHHH
T ss_pred H------HHHHHHHHHHh------hChHH---HHHHHHHHHHhCCCCCCCHHHHHHHH
Confidence 4 45888999876 23333 45678888763 33677777665
No 149
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.08 E-value=5.1e-09 Score=91.19 Aligned_cols=110 Identities=13% Similarity=0.027 Sum_probs=87.5
Q ss_pred CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCC
Q 013867 102 LAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKP 181 (435)
Q Consensus 102 ~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~ 181 (435)
.+.+..+..+.++|.+|..+|+|++|++.|++++.+ .|.
T Consensus 5 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~----------------------~p~------------------- 43 (164)
T 3sz7_A 5 MAPTPESDKLKSEGNAAMARKEYSKAIDLYTQALSI----------------------APA------------------- 43 (164)
T ss_dssp SSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------------STT-------------------
T ss_pred chhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------------CCc-------------------
Confidence 356788999999999999999999999999987332 111
Q ss_pred CchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCC
Q 013867 182 ENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNT 261 (435)
Q Consensus 182 ~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~ 261 (435)
...+..++|.+|..+|+|++|+..|++++++. + .
T Consensus 44 -------------------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------p-~ 77 (164)
T 3sz7_A 44 -------------------------------------NPIYLSNRAAAYSASGQHEKAAEDAELATVVD--------P-K 77 (164)
T ss_dssp -------------------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------T-T
T ss_pred -------------------------------------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------C-C
Confidence 01233456777889999999999999999991 1 1
Q ss_pred cccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChh
Q 013867 262 LGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPK 314 (435)
Q Consensus 262 l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~ 314 (435)
...++.+||.+|..+|+|++|...|++++.+. |+++.
T Consensus 78 -----------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~~~~ 114 (164)
T 3sz7_A 78 -----------YSKAWSRLGLARFDMADYKGAKEAYEKGIEAE-----GNGGS 114 (164)
T ss_dssp -----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----SSSCC
T ss_pred -----------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----CCchH
Confidence 12467899999999999999999999999985 56665
No 150
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.07 E-value=5.2e-09 Score=83.97 Aligned_cols=118 Identities=21% Similarity=0.303 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhc
Q 013867 107 RGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKT 186 (435)
Q Consensus 107 ~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~e 186 (435)
.+..+.++|.+|...|+|++|++.|++++.+ .+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----------------------~~~~----------------------- 42 (125)
T 1na0_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL----------------------DPNN----------------------- 42 (125)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------------CTTC-----------------------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----------------------CcCc-----------------------
Confidence 4788999999999999999999998887321 1110
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCccccc
Q 013867 187 YGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCN 266 (435)
Q Consensus 187 aeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~ 266 (435)
..+...++.++..+|+|++|+.+|++++.+. . .
T Consensus 43 ---------------------------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---~------~----- 75 (125)
T 1na0_A 43 ---------------------------------AEAWYNLGNAYYKQGDYDEAIEYYQKALELD---P------N----- 75 (125)
T ss_dssp ---------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---T------T-----
T ss_pred ---------------------------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC---C------c-----
Confidence 0122335666788999999999999999871 1 1
Q ss_pred ccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhh
Q 013867 267 MALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKA 330 (435)
Q Consensus 267 ~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG 330 (435)
....+.++|.+|..+|+|++|..+|++++.+ +|+....+.+++.++..+|
T Consensus 76 ------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 76 ------NAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp ------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHC
T ss_pred ------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHhcc
Confidence 1135689999999999999999999999987 3555667889999888765
No 151
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.05 E-value=1.4e-09 Score=91.58 Aligned_cols=96 Identities=19% Similarity=0.041 Sum_probs=79.6
Q ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013867 223 ALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLT 302 (435)
Q Consensus 223 a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~ 302 (435)
...+|..+..+|+|++|+..|++++++ . |+ ...++.+||.+|..+|++++|+..|++|++
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~-----------~-------P~--~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 79 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK-----------E-------PE--REEAWRSLGLTQAENEKDGLAIIALNHARM 79 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-----------S-------TT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH-----------C-------CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456788889999999999999999998 1 11 124678999999999999999999999999
Q ss_pred HHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 303 KTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 303 I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
+ .|++ ...+.+||.+|..+|++++| +..|++++++.
T Consensus 80 l-----~P~~---~~~~~~la~~~~~~g~~~~A------~~~~~~al~~~ 115 (121)
T 1hxi_A 80 L-----DPKD---IAVHAALAVSHTNEHNANAA------LASLRAWLLSQ 115 (121)
T ss_dssp H-----CTTC---HHHHHHHHHHHHHHHHHHHH------HHHHHHHHC--
T ss_pred h-----CCCC---HHHHHHHHHHHHHcCCHHHH------HHHHHHHHHhC
Confidence 7 3444 45889999999999998776 89999998764
No 152
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.05 E-value=1e-09 Score=113.30 Aligned_cols=141 Identities=15% Similarity=0.036 Sum_probs=106.5
Q ss_pred chhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCccccc-ccchHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 013867 218 CTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCN-MALEEVALAATFALGQLEAHMGNFGDAEEI 296 (435)
Q Consensus 218 ~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~-~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l 296 (435)
.......++|..|..+|+|++|+..|++|+++... .+.+.... ...+.....+++|+|.+|..+|+|++|+..
T Consensus 266 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~------~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~ 339 (457)
T 1kt0_A 266 EQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEM------EYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVEC 339 (457)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT------CCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcc------cccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 34456677899999999999999999999998321 11110000 000111245778999999999999999999
Q ss_pred HHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHh
Q 013867 297 LTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALAR 376 (435)
Q Consensus 297 ~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~ 376 (435)
|++||.+ +|+...++.++|.+|..+|+|++| ...|++|+++. |+......+++.++..+
T Consensus 340 ~~~al~~--------~p~~~~a~~~~g~a~~~~g~~~~A------~~~~~~al~l~-------P~~~~a~~~l~~~~~~~ 398 (457)
T 1kt0_A 340 CDKALGL--------DSANEKGLYRRGEAQLLMNEFESA------KGDFEKVLEVN-------PQNKAARLQISMCQKKA 398 (457)
T ss_dssp HHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHTTC-----------CHHHHHHHHHHHH
T ss_pred HHHHHhc--------CCccHHHHHHHHHHHHHccCHHHH------HHHHHHHHHhC-------CCCHHHHHHHHHHHHHH
Confidence 9999997 466678899999999999998876 89999999874 33345677899999999
Q ss_pred cCHHHHhhH
Q 013867 377 GGYAEALSV 385 (435)
Q Consensus 377 G~yaeal~~ 385 (435)
|+|.++...
T Consensus 399 ~~~~~a~~~ 407 (457)
T 1kt0_A 399 KEHNERDRR 407 (457)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999887653
No 153
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.05 E-value=1.9e-09 Score=108.67 Aligned_cols=139 Identities=14% Similarity=0.125 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013867 221 SAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRT 300 (435)
Q Consensus 221 ~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rA 300 (435)
.....+|..+..+|+|++|+..|++||++.............. ...|. ...+++|||.+|..+|+|++|+.+|++|
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~--~~~~~--~~~~~~nla~~~~~~g~~~~A~~~~~~a 299 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGA--KLQPV--ALSCVLNIGACKLKMSDWQGAVDSCLEA 299 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHG--GGHHH--HHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHH--HHHHH--HHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 3456678899999999999999999999854321000000000 00121 3357789999999999999999999999
Q ss_pred HHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHH
Q 013867 301 LTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYA 380 (435)
Q Consensus 301 L~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~ya 380 (435)
|++ +|+.+.++.++|.+|..+|++++| +..|++|+++. |++ .....+++.++..++++.
T Consensus 300 l~~--------~p~~~~a~~~lg~~~~~~g~~~eA------~~~l~~Al~l~----P~~---~~~~~~l~~~~~~~~~~~ 358 (370)
T 1ihg_A 300 LEI--------DPSNTKALYRRAQGWQGLKEYDQA------LADLKKAQEIA----PED---KAIQAELLKVKQKIKAQK 358 (370)
T ss_dssp HTT--------CTTCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHC----TTC---HHHHHHHHHHHHHHHHHH
T ss_pred HHh--------CchhHHHHHHHHHHHHHccCHHHH------HHHHHHHHHhC----CCC---HHHHHHHHHHHHHHHHHH
Confidence 985 567788899999999999998876 89999999985 223 335566777777777777
Q ss_pred HHhh
Q 013867 381 EALS 384 (435)
Q Consensus 381 eal~ 384 (435)
++..
T Consensus 359 ~a~k 362 (370)
T 1ihg_A 359 DKEK 362 (370)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6544
No 154
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.05 E-value=1.3e-08 Score=105.55 Aligned_cols=193 Identities=11% Similarity=0.085 Sum_probs=130.5
Q ss_pred hhcHH-------HHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 013867 79 DESYS-------QGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEA 151 (435)
Q Consensus 79 ~G~Y~-------eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~ 151 (435)
.|+++ +|+.+|+++++.. .|.-.....+++.++..+|++++|+.+|++++.+.....
T Consensus 292 ~g~~~~a~~~~~~A~~~~~~Al~~~-------~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~--------- 355 (530)
T 2ooe_A 292 KGDMNNAKLFSDEAANIYERAISTL-------LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDP--------- 355 (530)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTTT-------CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCH---------
T ss_pred ccchhhhhhhhHHHHHHHHHHHHHh-------CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCc---------
Confidence 47776 9999999999621 255677889999999999999999999999966432210
Q ss_pred HHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHH-H
Q 013867 152 LAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEY-L 230 (435)
Q Consensus 152 L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~-~ 230 (435)
+ ......+.+....+ .+++|..+ +.+|+. .. |+...+....+.+ +
T Consensus 356 -------------~-~~~~~~~~~~~~~~--~~~~A~~~--~~~Al~--------~~--------~~~~~~~~~~a~~~~ 401 (530)
T 2ooe_A 356 -------------T-LVYIQYMKFARRAE--GIKSGRMI--FKKARE--------DA--------RTRHHVYVTAALMEY 401 (530)
T ss_dssp -------------H-HHHHHHHHHHHHHH--HHHHHHHH--HHHHHT--------CT--------TCCTHHHHHHHHHHH
T ss_pred -------------h-HHHHHHHHHHHHhc--CHHHHHHH--HHHHHh--------cc--------CCchHHHHHHHHHHH
Confidence 1 11122222222222 13333332 222222 11 1122233333333 4
Q ss_pred HHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCC
Q 013867 231 HATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGS 310 (435)
Q Consensus 231 ~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~ 310 (435)
..+|++++|..+|+++|++. |+. .....+++.++..+|++++|..+|++|+.. ++
T Consensus 402 ~~~~~~~~A~~~~e~al~~~------------------p~~--~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~-----~~ 456 (530)
T 2ooe_A 402 YCSKDKSVAFKIFELGLKKY------------------GDI--PEYVLAYIDYLSHLNEDNNTRVLFERVLTS-----GS 456 (530)
T ss_dssp HHTCCHHHHHHHHHHHHHHH------------------TTC--HHHHHHHHHHHTTTTCHHHHHHHHHHHHHS-----CC
T ss_pred HHcCChhHHHHHHHHHHHHC------------------CCC--HHHHHHHHHHHHhCCCHhhHHHHHHHHHhc-----cC
Confidence 57999999999999999882 111 134678999999999999999999999875 56
Q ss_pred CChh-HHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 311 HHPK-VGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 311 ~HP~-va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
.+|+ ....+..........|+.+.+ ..+++|+++..
T Consensus 457 ~~~~~~~~lw~~~~~~e~~~G~~~~~------~~~~~r~~~~~ 493 (530)
T 2ooe_A 457 LPPEKSGEIWARFLAFESNIGDLASI------LKVEKRRFTAF 493 (530)
T ss_dssp SCGGGCHHHHHHHHHHHHHSSCHHHH------HHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHH------HHHHHHHHHHC
Confidence 7785 445666778888888997766 88999999988
No 155
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.03 E-value=2.4e-09 Score=89.53 Aligned_cols=105 Identities=10% Similarity=0.018 Sum_probs=86.8
Q ss_pred cchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 013867 217 GCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEI 296 (435)
Q Consensus 217 ~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l 296 (435)
+........+|..+..+|+|++|+.+|++++++. + . +......+.++|.+|..+|+|++|+..
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--------~-~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~ 87 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLD--------A-T--------PQDQAVLHRNRAACHLKLEDYDKAETE 87 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--------C-C--------HHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--------c-c--------chHHHHHHHHHHHHHHHHccHHHHHHH
Confidence 4455677778999999999999999999999761 0 0 001234678999999999999999999
Q ss_pred HHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 297 LTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 297 ~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
|++++.+ +|+....+.++|.+|..+|++++| ...|++++++.
T Consensus 88 ~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A------~~~~~~al~~~ 129 (148)
T 2dba_A 88 ASKAIEK--------DGGDVKALYRRSQALEKLGRLDQA------VLDLQRCVSLE 129 (148)
T ss_dssp HHHHHHH--------TSCCHHHHHHHHHHHHHHTCHHHH------HHHHHHHHHHC
T ss_pred HHHHHhh--------CccCHHHHHHHHHHHHHcCCHHHH------HHHHHHHHHcC
Confidence 9999987 455577899999999999998776 89999999875
No 156
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.03 E-value=3e-09 Score=102.29 Aligned_cols=195 Identities=9% Similarity=0.039 Sum_probs=130.8
Q ss_pred HHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhh
Q 013867 61 VVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNS 140 (435)
Q Consensus 61 vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~ 140 (435)
.+..+.++|..+. ..|+|++|+..|++++... |..+..++++|.+|..+|+|++|+..|++++.+...
T Consensus 3 ~a~~~~~~g~~~~----~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 70 (281)
T 2c2l_A 3 SAQELKEQGNRLF----VGRKYPEAAACYGRAITRN--------PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ 70 (281)
T ss_dssp CHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHC--------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT
T ss_pred hHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHhC--------CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 4567788888874 3689999999999999763 556789999999999999999999999999877654
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchh-chhhHHHHHHHHHHHHHHhcCCCcccccccccch
Q 013867 141 ILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYK-TYGAVNSRANAVKGLVELAHGNLESGLQEEEGCT 219 (435)
Q Consensus 141 ~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~-eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~ 219 (435)
. ..++.+++..+..+|.+..|......++.+.-.... .+. .........+..... ....... +..
T Consensus 71 ~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~--------~~~ 136 (281)
T 2c2l_A 71 S----VKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRL-NFGDDIPSALRIAKKKRWN-SIEERRI--------HQE 136 (281)
T ss_dssp C----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-CCCSHHHHHHHHHHHHHHH-HHHHTCC--------CCC
T ss_pred C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchh-hHHHHHHHHHHHHHHHHHH-HHHHHHH--------hhh
Confidence 3 335667888899999999999888888877654321 111 111111122111110 0011111 112
Q ss_pred hHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHc-CCHHHHHHHHH
Q 013867 220 GSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHM-GNFGDAEEILT 298 (435)
Q Consensus 220 ~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~q-G~y~eAe~l~~ 298 (435)
..+...++.++ +|++++|...|++|++. . |+. ......++.++... ++|++|+.+|.
T Consensus 137 ~~i~~~l~~l~--~~~~~~A~~~~~~al~~-----------~-------p~~--~~~~~~l~~~~~~~~~~~~~a~~~f~ 194 (281)
T 2c2l_A 137 SELHSYLTRLI--AAERERELEECQRNHEG-----------H-------EDD--GHIRAQQACIEAKHDKYMADMDELFS 194 (281)
T ss_dssp CHHHHHHHHHH--HHHHHHHHTTTSGGGTT-----------T-------SCH--HHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHhhhcc-----------c-------cch--hhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 23444455554 79999999999988866 1 111 12234566666665 88999999999
Q ss_pred HHHHH
Q 013867 299 RTLTK 303 (435)
Q Consensus 299 rAL~I 303 (435)
++.+.
T Consensus 195 ~a~~~ 199 (281)
T 2c2l_A 195 QVDEK 199 (281)
T ss_dssp HSSCT
T ss_pred hhhcc
Confidence 98764
No 157
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.02 E-value=7.8e-10 Score=91.53 Aligned_cols=90 Identities=17% Similarity=0.211 Sum_probs=71.7
Q ss_pred HhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCC
Q 013867 232 ATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSH 311 (435)
Q Consensus 232 ~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~ 311 (435)
.+|+|++|+++|++++++ ... .|+ ...++.+||.+|..+|+|++|+..|++++.+
T Consensus 2 ~~g~~~~A~~~~~~al~~---~~~------------~p~--~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-------- 56 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIAS---GLQ------------GKD--LAECYLGLGSTFRTLGEYRKAEAVLANGVKQ-------- 56 (117)
T ss_dssp -----CCCHHHHHHHHSS---CCC------------HHH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred CCCcHHHHHHHHHHHHHc---CCC------------Ccc--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------
Confidence 479999999999999976 100 022 2357889999999999999999999999987
Q ss_pred ChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 312 HPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 312 HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
+|+...++.++|.+|..+|++++| +..|++++++.
T Consensus 57 ~p~~~~~~~~l~~~~~~~g~~~~A------~~~~~~al~~~ 91 (117)
T 3k9i_A 57 FPNHQALRVFYAMVLYNLGRYEQG------VELLLKIIAET 91 (117)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHH------HHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCHHHH------HHHHHHHHHhC
Confidence 455577899999999999998776 89999999986
No 158
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.02 E-value=3.5e-09 Score=84.35 Aligned_cols=98 Identities=16% Similarity=0.068 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013867 221 SAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRT 300 (435)
Q Consensus 221 ~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rA 300 (435)
.....+|..+..+|+|++|+.+|++++.+. + . ....+.++|.+|..+|+|++|...|+++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------~-~-----------~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 64 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD--------P-H-----------NHVLYSNRSAAYAKKGDYQKAYEDGCKT 64 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------T-T-----------CHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC--------C-C-----------cHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 455667888999999999999999999881 1 1 1135789999999999999999999999
Q ss_pred HHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 301 LTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 301 L~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
+.+ +|+....+.++|.+|..+|++++| ...|++++++.
T Consensus 65 ~~~--------~~~~~~~~~~~a~~~~~~~~~~~A------~~~~~~~~~~~ 102 (118)
T 1elw_A 65 VDL--------KPDWGKGYSRKAAALEFLNRFEEA------KRTYEEGLKHE 102 (118)
T ss_dssp HHH--------CTTCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHTTC
T ss_pred HHh--------CcccHHHHHHHHHHHHHHhhHHHH------HHHHHHHHHcC
Confidence 987 355567899999999999998776 88899988753
No 159
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.02 E-value=6.1e-10 Score=97.12 Aligned_cols=94 Identities=14% Similarity=0.026 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhc
Q 013867 274 LAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLK 353 (435)
Q Consensus 274 l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k 353 (435)
...+.++|.+|..+|+|++|+.+|++++.+ .|+-...+.++|.+|..+|++++| +..|++++++.
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A------~~~~~~al~l~- 85 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVL--------DHYDSRFFLGLGACRQAMGQYDLA------IHSYSYGAVMD- 85 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHS-
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHc--------CcccHHHHHHHHHHHHHHhhHHHH------HHHHHHHHhcC-
Confidence 357889999999999999999999999986 455567789999999999998876 89999999985
Q ss_pred CCCCCCCchhhhhccHHHHHHHhcCHHHHhhHhhh
Q 013867 354 APPLESEGVETKVDRTDIVALARGGYAEALSVQQN 388 (435)
Q Consensus 354 ~~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~~~ 388 (435)
|++| ..+.+++.++..+|++++|+..+.+
T Consensus 86 ---p~~~---~~~~~lg~~~~~~g~~~~A~~~~~~ 114 (148)
T 2vgx_A 86 ---IXEP---RFPFHAAECLLQXGELAEAESGLFL 114 (148)
T ss_dssp ---TTCT---HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ---CCCc---hHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3444 4667899999999999999887744
No 160
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.00 E-value=8.6e-10 Score=87.36 Aligned_cols=99 Identities=12% Similarity=0.011 Sum_probs=81.7
Q ss_pred hHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013867 220 GSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTR 299 (435)
Q Consensus 220 ~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~r 299 (435)
..+...+|.++..+|+|++|+.+|++++++. . . ....+.++|.+|..+|+|++|..+|++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~---~------~-----------~~~~~~~~a~~~~~~~~~~~A~~~~~~ 65 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD---P------E-----------ESKYWLMKGKALYNLERYEEAVDCYNY 65 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC---C------C-----------CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC---c------C-----------CHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 3455667889999999999999999999881 1 1 113578999999999999999999999
Q ss_pred HHHHHHHhhCCCChh--HHHHHHHHHHHHHHh-hhhhhhhhhHHHHHHHHHHHHHh
Q 013867 300 TLTKTEELFGSHHPK--VGVVLTCLALMFRNK-AMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 300 AL~I~e~~lG~~HP~--va~~L~nLA~ly~~q-G~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
++.+ .|+ ...++.++|.+|..+ |++++| +..+++++...
T Consensus 66 a~~~--------~~~~~~~~~~~~l~~~~~~~~~~~~~A------~~~~~~~~~~~ 107 (112)
T 2kck_A 66 VINV--------IEDEYNKDVWAAKADALRYIEGKEVEA------EIAEARAKLEH 107 (112)
T ss_dssp HHHT--------SCCTTCHHHHHHHHHHHTTCSSCSHHH------HHHHHHHGGGC
T ss_pred HHHh--------CcccchHHHHHHHHHHHHHHhCCHHHH------HHHHHHHhhcc
Confidence 9986 344 567899999999999 998776 78888887654
No 161
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.95 E-value=3.2e-09 Score=93.11 Aligned_cols=116 Identities=14% Similarity=0.124 Sum_probs=90.7
Q ss_pred HHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCC
Q 013867 231 HATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGS 310 (435)
Q Consensus 231 ~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~ 310 (435)
..+|+|++|+.+|++++++ . + . ....+.++|.+|..+|+|++|+.+|++++.+. |
T Consensus 21 ~~~~~~~~A~~~~~~al~~---~-----p-~-----------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-----p 75 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA---N-----P-Q-----------NSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-----G 75 (177)
T ss_dssp C-----CCCCHHHHHHHHH---C-----C-S-----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----C
T ss_pred hhccCHHHHHHHHHHHHHh---C-----C-C-----------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----C
Confidence 4579999999999999988 1 1 1 11457899999999999999999999999874 3
Q ss_pred CChhHHHHHHHHHHH-HHHhhhh--hhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHHHhhHhh
Q 013867 311 HHPKVGVVLTCLALM-FRNKAMQ--EHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQQ 387 (435)
Q Consensus 311 ~HP~va~~L~nLA~l-y~~qG~~--e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~~ 387 (435)
+ ....+.++|.+ |..+|++ ++| +..|++++++. |+....+.+++.++..+|+|++|+..+.
T Consensus 76 ~---~~~~~~~la~~l~~~~~~~~~~~A------~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~ 139 (177)
T 2e2e_A 76 E---NAELYAALATVLYYQASQHMTAQT------RAMIDKALALD-------SNEITALMLLASDAFMQANYAQAIELWQ 139 (177)
T ss_dssp S---CHHHHHHHHHHHHHHTTTCCCHHH------HHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred C---CHHHHHHHHHHHHHhcCCcchHHH------HHHHHHHHHhC-------CCcHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 3 45678999999 8899997 766 89999999984 3334567789999999999999988763
No 162
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.95 E-value=6.2e-09 Score=100.05 Aligned_cols=99 Identities=13% Similarity=-0.021 Sum_probs=85.3
Q ss_pred hHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013867 220 GSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTR 299 (435)
Q Consensus 220 ~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~r 299 (435)
......+|..+..+|+|++|+.+|++|+++. + . ....+.++|.+|..+|+|++|+..|++
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--------p-~-----------~~~~~~~la~~~~~~~~~~~A~~~~~~ 63 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN--------P-L-----------VAVYYTNRALCYLKMQQPEQALADCRR 63 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------S-C-----------CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------C-c-----------cHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 3456678889999999999999999999981 1 1 124678999999999999999999999
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 300 TLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 300 AL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
|+.+ +|+....++++|.+|..+|++++| +..|++++++.
T Consensus 64 al~~--------~p~~~~~~~~lg~~~~~~g~~~~A------~~~~~~al~l~ 102 (281)
T 2c2l_A 64 ALEL--------DGQSVKAHFFLGQCQLEMESYDEA------IANLQRAYSLA 102 (281)
T ss_dssp HTTS--------CTTCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHH
T ss_pred HHHh--------CCCCHHHHHHHHHHHHHcCCHHHH------HHHHHHHHHhC
Confidence 9986 677778999999999999998776 89999999987
No 163
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.94 E-value=1.2e-08 Score=89.46 Aligned_cols=101 Identities=12% Similarity=0.112 Sum_probs=84.9
Q ss_pred chhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHH-HHHcCCH--HHHH
Q 013867 218 CTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQL-EAHMGNF--GDAE 294 (435)
Q Consensus 218 ~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~l-y~~qG~y--~eAe 294 (435)
....+...+|.+|..+|+|++|+.+|++++++. . . ....+.++|.+ |..+|+| ++|+
T Consensus 42 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---p------~-----------~~~~~~~la~~l~~~~~~~~~~~A~ 101 (177)
T 2e2e_A 42 QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR---G------E-----------NAELYAALATVLYYQASQHMTAQTR 101 (177)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---C------S-----------CHHHHHHHHHHHHHHTTTCCCHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---C------C-----------CHHHHHHHHHHHHHhcCCcchHHHH
Confidence 345677788999999999999999999999982 1 0 01356799999 8899999 9999
Q ss_pred HHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 295 EILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 295 ~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
.+|++++.+ +|+-..++.++|.+|..+|++++| ...|++++++.
T Consensus 102 ~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A------~~~~~~al~~~ 145 (177)
T 2e2e_A 102 AMIDKALAL--------DSNEITALMLLASDAFMQANYAQA------IELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHTC
T ss_pred HHHHHHHHh--------CCCcHHHHHHHHHHHHHcccHHHH------HHHHHHHHhhC
Confidence 999999987 455567899999999999998776 89999999875
No 164
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.94 E-value=3.5e-09 Score=95.74 Aligned_cols=107 Identities=12% Similarity=0.040 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhC----CCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHH
Q 013867 276 ATFALGQLEAHMGNFGDAEEILTRTLTKTEELFG----SHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEF 351 (435)
Q Consensus 276 ~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG----~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I 351 (435)
.+.++|..+..+|+|++|+..|++||.+.-..-. ...|.-+.+++|+|.++...|+|++| +..|.+||+|
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eA------l~~~~kAL~l 86 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEA------LHSADKALHY 86 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHH------HHHHHHHHHh
Confidence 5679999999999999999999999998654110 01133566999999999999998876 8999999999
Q ss_pred hcCCCCCCCchhhhh----ccHHHHHHHhcCHHHHhhHhhh
Q 013867 352 LKAPPLESEGVETKV----DRTDIVALARGGYAEALSVQQN 388 (435)
Q Consensus 352 ~k~~~~~hp~~a~~l----~nla~~~~a~G~yaeal~~~~~ 388 (435)
+..-+.-.|+.+..+ +|++.++...|+|+||+..+.+
T Consensus 87 ~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~k 127 (159)
T 2hr2_A 87 FNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKK 127 (159)
T ss_dssp HHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHH
Confidence 733345556767777 9999999999999999887743
No 165
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.89 E-value=1.1e-08 Score=82.97 Aligned_cols=99 Identities=14% Similarity=0.128 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcC
Q 013867 275 AATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKA 354 (435)
Q Consensus 275 ~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~ 354 (435)
.++.++|.+|..+|+|++|..+|++++.+ .|+...++.++|.+|..+|++++| ...|++++++...
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~~~~~~A------~~~~~~~~~~~~~ 70 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKEL--------DPTNMTYITNQAAVYFEKGDYNKC------RELCEKAIEVGRE 70 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHH------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHhccHHHH------HHHHHHHHhhccc
Confidence 46789999999999999999999999987 355567899999999999998876 8999999999854
Q ss_pred CCCCCCchhhhhccHHHHHHHhcCHHHHhhHhh
Q 013867 355 PPLESEGVETKVDRTDIVALARGGYAEALSVQQ 387 (435)
Q Consensus 355 ~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~~ 387 (435)
.+.+++.....+.+++.++...|+|++|...+.
T Consensus 71 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 103 (131)
T 1elr_A 71 NREDYRQIAKAYARIGNSYFKEEKYKDAIHFYN 103 (131)
T ss_dssp STTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 344444457788899999999999999988763
No 166
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.89 E-value=1.6e-08 Score=92.82 Aligned_cols=140 Identities=12% Similarity=0.023 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcC----CHHHHHHH
Q 013867 221 SAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMG----NFGDAEEI 296 (435)
Q Consensus 221 ~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG----~y~eAe~l 296 (435)
.+..++|.+|..+|++++|+.+|++|++. + + ..++++||.+|.. | ++++|..+
T Consensus 19 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-----g---~--------------~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 19 RAQYYLADTWVSSGDYQKAEYWAQKAAAQ-----G---D--------------GDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHT-----T---C--------------HHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHc-----C---C--------------HHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 46667777787888888888888887643 1 0 1356778888877 6 78888888
Q ss_pred HHHHHHHHHHhhCCCChhHHHHHHHHHHHHHH----hhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCC-chhhhhccHHH
Q 013867 297 LTRTLTKTEELFGSHHPKVGVVLTCLALMFRN----KAMQEHSSALLIQEGLYRRALEFLKAPPLESE-GVETKVDRTDI 371 (435)
Q Consensus 297 ~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~----qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp-~~a~~l~nla~ 371 (435)
|++|.. +.| ..++++||.+|.. .+++++| ..+|++|+++- ++ +......|++.
T Consensus 76 ~~~A~~-------~g~---~~a~~~Lg~~y~~g~g~~~d~~~A------~~~~~~A~~~~------~~~~~~~a~~~Lg~ 133 (212)
T 3rjv_A 76 AEKAVE-------AGS---KSGEIVLARVLVNRQAGATDVAHA------ITLLQDAARDS------ESDAAVDAQMLLGL 133 (212)
T ss_dssp HHHHHH-------TTC---HHHHHHHHHHHTCGGGSSCCHHHH------HHHHHHHTSST------TSHHHHHHHHHHHH
T ss_pred HHHHHH-------CCC---HHHHHHHHHHHHcCCCCccCHHHH------HHHHHHHHHcC------CCcchHHHHHHHHH
Confidence 888754 123 4567788888876 5555444 67777776532 11 23456677788
Q ss_pred HHHH----hcCHHHHhhHhhhhhh---HHHHHHHHHHHHhc
Q 013867 372 VALA----RGGYAEALSVQQNRKD---EGERMKRWAEAAWR 405 (435)
Q Consensus 372 ~~~a----~G~yaeal~~~~~r~~---eae~~~~~a~~~~~ 405 (435)
+|.. .+++.+|+..+.+-.+ ..+.+...+..++.
T Consensus 134 ~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~a~~~Lg~~y~~ 174 (212)
T 3rjv_A 134 IYASGVHGPEDDVKASEYFKGSSSLSRTGYAEYWAGMMFQQ 174 (212)
T ss_dssp HHHHTSSSSCCHHHHHHHHHHHHHTSCTTHHHHHHHHHHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 8777 6677777776644322 23455556665553
No 167
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.89 E-value=1.1e-07 Score=109.80 Aligned_cols=252 Identities=14% Similarity=0.089 Sum_probs=144.6
Q ss_pred hhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHH------------------------HHHHHHHHcCCHHHHHHHHHHH
Q 013867 79 DESYSQGMLVLEQCLSTQPSDGQLAESWRGISLL------------------------AMSTLLYESGNYVEAIEKLQKV 134 (435)
Q Consensus 79 ~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~------------------------nLa~ly~~qGky~eA~~l~~ra 134 (435)
.|.|.+|+++||+++ .....+ .+|+..-..+. .+|.++.+.|.|+||..+|+++
T Consensus 998 aglp~EaieLLEKiv-l~~s~f-s~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~lglyEEAf~IYkKa 1075 (1630)
T 1xi4_A 998 ADLPNELIELLEKIV-LDNSVF-SEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEAFAIFRKF 1075 (1630)
T ss_pred CCCHHHHHHHHHHHH-cCCCcc-cccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 579999999999999 322212 24555444321 1488999999999999999997
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccc
Q 013867 135 ENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQE 214 (435)
Q Consensus 135 l~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~ 214 (435)
. .......+- +..++..+.|..+++++ . +.+.++..+++. .-.|++++|...
T Consensus 1076 ~-~~~~A~~VL----------ie~i~nldrAiE~Aerv-------n-----~p~vWsqLAKAq-----l~~G~~kEAIds 1127 (1630)
T 1xi4_A 1076 D-VNTSAVQVL----------IEHIGNLDRAYEFAERC-------N-----EPAVWSQLAKAQ-----LQKGMVKEAIDS 1127 (1630)
T ss_pred C-CHHHHHHHH----------HHHHhhHHHHHHHHHhc-------C-----CHHHHHHHHHHH-----HhCCCHHHHHHH
Confidence 3 111111111 11233344443333321 1 011222222211 122333332211
Q ss_pred c-ccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHh-----ccc-----CCCCCcccccccchHHHHHHHHHHHHH
Q 013867 215 E-EGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQ-----KDF-----SDMNTLGSCNMALEEVALAATFALGQL 283 (435)
Q Consensus 215 ~-~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~-----~~~-----~~~~~l~~~~~~~~~~~l~~l~nLa~l 283 (435)
+ ...........+.++...|+|++|.++|++|..+..+. +++ .....+. ... ..+....+.++|..
T Consensus 1128 YiKAdD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele-~fI--~~~n~ad~~~iGd~ 1204 (1630)
T 1xi4_A 1128 YIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELE-EFI--NGPNNAHIQQVGDR 1204 (1630)
T ss_pred HHhcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHH-HHH--hCCCHHHHHHHHHH
Confidence 1 11223455667889999999999999999988663100 000 0000000 000 00112346689999
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh--cC-------
Q 013867 284 EAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL--KA------- 354 (435)
Q Consensus 284 y~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~--k~------- 354 (435)
+..+|+|++|..+|.+| ..+..+|..|...|++++| ...|++|.... +.
T Consensus 1205 le~eg~YeeA~~~Y~kA----------------~ny~rLA~tLvkLge~q~A------IEaarKA~n~~aWkev~~acve 1262 (1630)
T 1xi4_A 1205 CYDEKMYDAAKLLYNNV----------------SNFGRLASTLVHLGEYQAA------VDGARKANSTRTWKEVCFACVD 1262 (1630)
T ss_pred HHhcCCHHHHHHHHHhh----------------hHHHHHHHHHHHhCCHHHH------HHHHHHhCCHHHHHHHHHHHhh
Confidence 99999999999999995 4788899999999998776 66676664432 10
Q ss_pred ---------CC---CCCCchhhhhccHHHHHHHhcCHHHHhhHhhh
Q 013867 355 ---------PP---LESEGVETKVDRTDIVALARGGYAEALSVQQN 388 (435)
Q Consensus 355 ---------~~---~~hp~~a~~l~nla~~~~a~G~yaeal~~~~~ 388 (435)
.| ..||+ .+..+...|..+|+|+||+.+.++
T Consensus 1263 ~~Ef~LA~~cgl~Iiv~~d---eLeeli~yYe~~G~feEAI~LlE~ 1305 (1630)
T 1xi4_A 1263 GKEFRLAQMCGLHIVVHAD---ELEELINYYQDRGYFEELITMLEA 1305 (1630)
T ss_pred hhHHHHHHHHHHhhhcCHH---HHHHHHHHHHHcCCHHHHHHHHHH
Confidence 01 12343 334556678888999988888743
No 168
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.88 E-value=5.2e-08 Score=95.69 Aligned_cols=145 Identities=12% Similarity=0.113 Sum_probs=107.7
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013867 221 SAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRT 300 (435)
Q Consensus 221 ~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rA 300 (435)
.+.+.|+.+|..+|+|++|..+|++.+.. + |+++ ...++|.++...|+|++|+.+|+++
T Consensus 103 dl~LayA~~L~~~g~y~eA~~~l~~~~~~-------------~-----p~~~---~~~~~a~l~~~~~r~~dA~~~l~~a 161 (282)
T 4f3v_A 103 AITMGFAACEAAQGNYADAMEALEAAPVA-------------G-----SEHL---VAWMKAVVYGAAERWTDVIDQVKSA 161 (282)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTSSCCT-------------T-----CHHH---HHHHHHHHHHHTTCHHHHHHHHTTG
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhc-------------C-----CchH---HHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 45667889999999999999999877643 1 3332 5688999999999999999999866
Q ss_pred HHHHHHhhCCCChhH-HHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCc-hhhhhccHHHHHHHhcC
Q 013867 301 LTKTEELFGSHHPKV-GVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEG-VETKVDRTDIVALARGG 378 (435)
Q Consensus 301 L~I~e~~lG~~HP~v-a~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~-~a~~l~nla~~~~a~G~ 378 (435)
+.. .||.. ..+..+||.++...|++++| +..|++++. ++..|. ......+++.++..+|+
T Consensus 162 ~~~-------~d~~~~~~a~~~LG~al~~LG~~~eA------l~~l~~a~~-----g~~~P~~~~da~~~~glaL~~lGr 223 (282)
T 4f3v_A 162 GKW-------PDKFLAGAAGVAHGVAAANLALFTEA------ERRLTEAND-----SPAGEACARAIAWYLAMARRSQGN 223 (282)
T ss_dssp GGC-------SCHHHHHHHHHHHHHHHHHTTCHHHH------HHHHHHHHT-----STTTTTTHHHHHHHHHHHHHHHTC
T ss_pred hcc-------CCcccHHHHHHHHHHHHHHCCCHHHH------HHHHHHHhc-----CCCCccccHHHHHHHHHHHHHcCC
Confidence 433 37765 55899999999999998776 899999873 333254 44566789999999888
Q ss_pred HHHHhhHhhhhhhHHHHHHHHHHHHhcccchhHHHHhcc
Q 013867 379 YAEALSVQQNRKDEGERMKRWAEAAWRNRRVSLAEALNF 417 (435)
Q Consensus 379 yaeal~~~~~r~~eae~~~~~a~~~~~~~r~~l~~~l~~ 417 (435)
.+||...+ +++.....+ ....++|..
T Consensus 224 ~deA~~~l-----------~~a~a~~P~--~~~~~aL~~ 249 (282)
T 4f3v_A 224 ESAAVALL-----------EWLQTTHPE--PKVAAALKD 249 (282)
T ss_dssp HHHHHHHH-----------HHHHHHSCC--HHHHHHHHC
T ss_pred HHHHHHHH-----------HHHHhcCCc--HHHHHHHhC
Confidence 87665544 445555555 455666653
No 169
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.87 E-value=3e-08 Score=99.89 Aligned_cols=141 Identities=14% Similarity=0.074 Sum_probs=105.6
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCch
Q 013867 105 SWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENY 184 (435)
Q Consensus 105 p~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~ 184 (435)
...+..+.++|..|..+|+|++|+..|++++.+.+... .... .
T Consensus 220 ~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~----------------------------------~~~~---~ 262 (370)
T 1ihg_A 220 LLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR----------------------------------AAAE---D 262 (370)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH----------------------------------HHSC---H
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCc----------------------------------cccC---h
Confidence 45677899999999999999999999999965432210 0000 0
Q ss_pred hchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCccc
Q 013867 185 KTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGS 264 (435)
Q Consensus 185 ~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~ 264 (435)
.+... .++....+..++|.+|..+|+|++|+.+|++||++. + .
T Consensus 263 ~~~~~-------------------------~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~--------p-~--- 305 (370)
T 1ihg_A 263 ADGAK-------------------------LQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID--------P-S--- 305 (370)
T ss_dssp HHHGG-------------------------GHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--------T-T---
T ss_pred HHHHH-------------------------HHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC--------c-h---
Confidence 00000 012233566778999999999999999999999871 1 1
Q ss_pred ccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhh
Q 013867 265 CNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHS 335 (435)
Q Consensus 265 ~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A 335 (435)
...++.++|.+|..+|+|++|+..|++|+++ .|+-.....+|+.++..+++++++
T Consensus 306 --------~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--------~P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 306 --------NTKALYRRAQGWQGLKEYDQALADLKKAQEI--------APEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp --------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred --------hHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 1246889999999999999999999999987 344556788999999999998766
No 170
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.87 E-value=2.4e-08 Score=82.15 Aligned_cols=97 Identities=12% Similarity=0.108 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCC
Q 013867 276 ATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAP 355 (435)
Q Consensus 276 ~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~ 355 (435)
++.++|..+..+|+|++|..+|++++.+ .|++|....++.++|.+|..+|++++| ...|++++.+.
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~~~~~lg~~~~~~~~~~~A------~~~~~~~~~~~--- 69 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLEL-----YPNGVYTPNALYWLGESYYATRNFQLA------EAQFRDLVSRY--- 69 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CSSSTTHHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHC---
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH-----CCCCcccHHHHHHHHHHHHHhccHHHH------HHHHHHHHHHC---
Confidence 3578999999999999999999999876 588999999999999999999998876 89999999875
Q ss_pred CCCCCchhhhhccHHHHHHHhcCHHHHhhHhh
Q 013867 356 PLESEGVETKVDRTDIVALARGGYAEALSVQQ 387 (435)
Q Consensus 356 ~~~hp~~a~~l~nla~~~~a~G~yaeal~~~~ 387 (435)
|+++.+...+.+++.++..+|+|++|+..+.
T Consensus 70 -p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 100 (129)
T 2xev_A 70 -PTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQ 100 (129)
T ss_dssp -TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -CCCcccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5666566778899999999999999988763
No 171
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.86 E-value=1.3e-07 Score=109.25 Aligned_cols=249 Identities=14% Similarity=0.103 Sum_probs=144.4
Q ss_pred ChhcHHHHHHHHHHHHhccCc------CCC--------CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHH
Q 013867 78 SDESYSQGMLVLEQCLSTQPS------DGQ--------LAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILG 143 (435)
Q Consensus 78 s~G~Y~eA~~~~eqaL~i~~~------~lG--------~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~ 143 (435)
+.|.|+||..+|+++-..... ..| .+....-.+++++|..+.++|+|.+|+..|.+|-+.
T Consensus 1061 ~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKAdD~------ 1134 (1630)
T 1xi4_A 1061 SNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKADDP------ 1134 (1630)
T ss_pred hCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhcCCh------
Confidence 356777887777776322111 001 112334566778999999999999999999887221
Q ss_pred HHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHH--HHHHHHHhcCCCcccccccccchhH
Q 013867 144 VRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANA--VKGLVELAHGNLESGLQEEEGCTGS 221 (435)
Q Consensus 144 i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~A--i~~~~~~lgg~h~~a~~~~~~~~~~ 221 (435)
..+.+++-.+.+.|.+..+..++..+.... +..+-+.+-.+.+++- +..+...+. .++. .
T Consensus 1135 ---say~eVa~~~~~lGkyEEAIeyL~mArk~~----~e~~Idt~LafaYAKl~rleele~fI~----------~~n~-a 1196 (1630)
T 1xi4_A 1135 ---SSYMEVVQAANTSGNWEELVKYLQMARKKA----RESYVETELIFALAKTNRLAELEEFIN----------GPNN-A 1196 (1630)
T ss_pred ---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhc----ccccccHHHHHHHHhhcCHHHHHHHHh----------CCCH-H
Confidence 122334445556677766655544322211 1000001111111110 000000111 1222 3
Q ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013867 222 AALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTL 301 (435)
Q Consensus 222 ~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL 301 (435)
...++|..+...|+|++|..+|.+|- ....||.+|.++|+|++|.+.+++|.
T Consensus 1197 d~~~iGd~le~eg~YeeA~~~Y~kA~----------------------------ny~rLA~tLvkLge~q~AIEaarKA~ 1248 (1630)
T 1xi4_A 1197 HIQQVGDRCYDEKMYDAAKLLYNNVS----------------------------NFGRLASTLVHLGEYQAAVDGARKAN 1248 (1630)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhh----------------------------HHHHHHHHHHHhCCHHHHHHHHHHhC
Confidence 44568999999999999999999961 13578999999999999999999996
Q ss_pred HHHH-----------------HhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhh
Q 013867 302 TKTE-----------------ELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVET 364 (435)
Q Consensus 302 ~I~e-----------------~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~ 364 (435)
...- ...|-+...-+..+..++..|..+|.|++| ..+++++|.+- +.|.+
T Consensus 1249 n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEA------I~LlE~aL~Le----raH~g--- 1315 (1630)
T 1xi4_A 1249 STRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEEL------ITMLEAALGLE----RAHMG--- 1315 (1630)
T ss_pred CHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHH------HHHHHHHhccC----hhHhH---
Confidence 6532 112322222233455888889999997766 78888887553 22333
Q ss_pred hhccHHHHHH--HhcCHHHHhhHhhhhhh
Q 013867 365 KVDRTDIVAL--ARGGYAEALSVQQNRKD 391 (435)
Q Consensus 365 ~l~nla~~~~--a~G~yaeal~~~~~r~~ 391 (435)
+...++++|. .-++.-|.+..+..|..
T Consensus 1316 mftELaiLyaKy~peklmEhlk~f~~rin 1344 (1630)
T 1xi4_A 1316 MFTELAILYSKFKPQKMREHLELFWSRVN 1344 (1630)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhcc
Confidence 3334455544 44566777777655544
No 172
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.85 E-value=7.8e-09 Score=102.34 Aligned_cols=153 Identities=12% Similarity=0.137 Sum_probs=85.7
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCch
Q 013867 105 SWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENY 184 (435)
Q Consensus 105 p~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~ 184 (435)
+..+..+.++|..|..+|+|++|+..|++++.+..... .+. ....+
T Consensus 176 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~--------------------------------~~~--~~~~~ 221 (338)
T 2if4_A 176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF--------------------------------MFQ--LYGKY 221 (338)
T ss_dssp HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH--------------------------------HHT--CCHHH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch--------------------------------hhh--hcccH
Confidence 45788899999999999999999999999865432210 000 00001
Q ss_pred hchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCccc
Q 013867 185 KTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGS 264 (435)
Q Consensus 185 ~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~ 264 (435)
. .++.. + ...+.+++|.+|..+|+|++|+..|++||++. + .
T Consensus 222 ~---------~~~~~----l--------------~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~--------p-~--- 262 (338)
T 2if4_A 222 Q---------DMALA----V--------------KNPCHLNIAACLIKLKRYDEAIGHCNIVLTEE--------E-K--- 262 (338)
T ss_dssp H---------HHHHH----H--------------HTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHC--------T-T---
T ss_pred H---------HHHHH----H--------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------C-C---
Confidence 1 01110 0 01245678999999999999999999999981 1 1
Q ss_pred ccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhh-hhhhhhhhHHHHH
Q 013867 265 CNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKA-MQEHSSALLIQEG 343 (435)
Q Consensus 265 ~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG-~~e~A~~~~~Ae~ 343 (435)
...+++++|.+|..+|+|++|+..|++|+.+. |+-..++.+|+.+...+. ..++ +..
T Consensus 263 --------~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~--------p~~~~a~~~L~~l~~~~~~~~~~------a~~ 320 (338)
T 2if4_A 263 --------NPKALFRRGKAKAELGQMDSARDDFRKAQKYA--------PDDKAIRRELRALAEQEKALYQK------QKE 320 (338)
T ss_dssp --------CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------------------
T ss_pred --------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHHHHHHHH------HHH
Confidence 12568999999999999999999999999874 444566778888855443 3333 467
Q ss_pred HHHHHHHHh
Q 013867 344 LYRRALEFL 352 (435)
Q Consensus 344 Ly~rAL~I~ 352 (435)
+|++++...
T Consensus 321 ~~~~~l~~~ 329 (338)
T 2if4_A 321 MYKGIFKGK 329 (338)
T ss_dssp ---------
T ss_pred HHHHhhCCC
Confidence 888877654
No 173
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.84 E-value=2.3e-08 Score=85.34 Aligned_cols=94 Identities=16% Similarity=0.073 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhc
Q 013867 274 LAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLK 353 (435)
Q Consensus 274 l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k 353 (435)
...+.++|..+..+|+|++|+.+|++++.+ +|+-...+.++|.+|..+|++++| +..|++++++.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A------~~~~~~al~~~- 82 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCML--------DHYDARYFLGLGACRQSLGLYEQA------LQSYSYGALMD- 82 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHHhhHHHH------HHHHHHHHhcC-
Confidence 357789999999999999999999999975 455567789999999999998876 89999999985
Q ss_pred CCCCCCCchhhhhccHHHHHHHhcCHHHHhhHhhh
Q 013867 354 APPLESEGVETKVDRTDIVALARGGYAEALSVQQN 388 (435)
Q Consensus 354 ~~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~~~ 388 (435)
|++|. ...+++.++..+|+|++|+..+.+
T Consensus 83 ---p~~~~---~~~~lg~~~~~~g~~~~A~~~~~~ 111 (142)
T 2xcb_A 83 ---INEPR---FPFHAAECHLQLGDLDGAESGFYS 111 (142)
T ss_dssp ---TTCTH---HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ---CCCcH---HHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44443 567899999999999999887643
No 174
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.81 E-value=3.6e-08 Score=75.99 Aligned_cols=84 Identities=19% Similarity=0.252 Sum_probs=69.5
Q ss_pred hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013867 219 TGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILT 298 (435)
Q Consensus 219 ~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~ 298 (435)
...+...+|.++..+|+|++|+.+|++++++. . . ....+.++|.+|..+|+|++|...|+
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~---~------~-----------~~~~~~~l~~~~~~~~~~~~A~~~~~ 67 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD---P------N-----------NAEAWYNLGNAYYKQGDYDEAIEYYQ 67 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---T------T-----------CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC---C------C-----------CHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 44566778999999999999999999999881 1 1 11457899999999999999999999
Q ss_pred HHHHHHHHhhCCCChhHHHHHHHHHHHHHHhh
Q 013867 299 RTLTKTEELFGSHHPKVGVVLTCLALMFRNKA 330 (435)
Q Consensus 299 rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG 330 (435)
+++.+ +|+...++.++|.+|..+|
T Consensus 68 ~a~~~--------~p~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 68 KALEL--------DPNNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp HHHHH--------CTTCHHHHHHHHHHHHHHC
T ss_pred HHHhc--------CCCCHHHHHHHHHHHHhcC
Confidence 99987 4555678899999998765
No 175
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.81 E-value=3.3e-08 Score=82.09 Aligned_cols=91 Identities=22% Similarity=0.146 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcC
Q 013867 275 AATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKA 354 (435)
Q Consensus 275 ~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~ 354 (435)
..+.++|..|..+|+|++|+..|++++.+ +|+....+.++|.+|..+|++++| +..|++++++.
T Consensus 10 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~~~~~~A------~~~~~~al~~~-- 73 (137)
T 3q49_B 10 QELKEQGNRLFVGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKMQQPEQA------LADCRRALELD-- 73 (137)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHhh--------CcCcHHHHHHHHHHHHHhcCHHHH------HHHHHHHHHhC--
Confidence 56789999999999999999999999997 455677999999999999998776 89999999985
Q ss_pred CCCCCCchhhhhccHHHHHHHhcCHHHHhhHh
Q 013867 355 PPLESEGVETKVDRTDIVALARGGYAEALSVQ 386 (435)
Q Consensus 355 ~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~ 386 (435)
|+....+.+++.++..+|+|++|+..+
T Consensus 74 -----p~~~~~~~~l~~~~~~~~~~~~A~~~~ 100 (137)
T 3q49_B 74 -----GQSVKAHFFLGQCQLEMESYDEAIANL 100 (137)
T ss_dssp -----TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred -----chhHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 344557789999999999999998766
No 176
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.79 E-value=8.1e-09 Score=102.22 Aligned_cols=116 Identities=12% Similarity=0.084 Sum_probs=83.6
Q ss_pred hHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013867 220 GSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTR 299 (435)
Q Consensus 220 ~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~r 299 (435)
......+|..+..+|+|++|+.+|++|+.+...... ....+...-....+...+++|||.+|..+|+|++|...|++
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~---~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~ 255 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM---FQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNI 255 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH---HTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh---hhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344566788889999999999999999998311000 00000000000011113678999999999999999999999
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 300 TLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 300 AL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
||.+ +|+-..++.++|.+|..+|++++| +..|++++++.
T Consensus 256 al~~--------~p~~~~a~~~lg~a~~~~g~~~~A------~~~l~~al~l~ 294 (338)
T 2if4_A 256 VLTE--------EEKNPKALFRRGKAKAELGQMDSA------RDDFRKAQKYA 294 (338)
T ss_dssp HHHH--------CTTCHHHHHHHHHHHHTTTCHHHH------HHHHHHTTC--
T ss_pred HHHh--------CCCCHHHHHHHHHHHHHcCCHHHH------HHHHHHHHHHC
Confidence 9986 466678899999999999998776 88999998775
No 177
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.77 E-value=2.6e-08 Score=79.53 Aligned_cols=90 Identities=12% Similarity=0.046 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013867 221 SAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRT 300 (435)
Q Consensus 221 ~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rA 300 (435)
.+..++|.++..+|+|++|+.+|++++++. + . ....+.++|.+|..+|+|++|+..|+++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--------p-~-----------~~~~~~~lg~~~~~~g~~~~A~~~~~~a 64 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQ--------P-Q-----------NPVGYSNKAMALIKLGEYTQAIQMCQQG 64 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--------T-T-----------CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------C-C-----------CHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 455678889999999999999999999981 1 1 1145789999999999999999999999
Q ss_pred HHHHHHhhCCCChh---HHHHHHHHHHHHHHhhhhhhh
Q 013867 301 LTKTEELFGSHHPK---VGVVLTCLALMFRNKAMQEHS 335 (435)
Q Consensus 301 L~I~e~~lG~~HP~---va~~L~nLA~ly~~qG~~e~A 335 (435)
+.+ .|++++ ...++.++|.+|..+|++++|
T Consensus 65 l~~-----~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a 97 (111)
T 2l6j_A 65 LRY-----TSTAEHVAIRSKLQYRLELAQGAVGSVQIP 97 (111)
T ss_dssp HTS-----CSSTTSHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred HHh-----CCCccHHHHHHHHHHHHHHHHHHHHhHhhh
Confidence 975 344422 377899999999999987765
No 178
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.75 E-value=4e-08 Score=82.54 Aligned_cols=91 Identities=11% Similarity=0.017 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCC
Q 013867 276 ATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAP 355 (435)
Q Consensus 276 ~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~ 355 (435)
...++|..+..+|+|++|+..|++++.+ .|+-+..+.+||.+|..+|++++| +..|++|+++.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~~~~A------~~~~~~al~l~--- 81 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQK--------EPEREEAWRSLGLTQAENEKDGLA------IIALNHARMLD--- 81 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHC---
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHH------HHHHHHHHHhC---
Confidence 3578999999999999999999999986 566678899999999999998776 89999999985
Q ss_pred CCCCCchhhhhccHHHHHHHhcCHHHHhhHhh
Q 013867 356 PLESEGVETKVDRTDIVALARGGYAEALSVQQ 387 (435)
Q Consensus 356 ~~~hp~~a~~l~nla~~~~a~G~yaeal~~~~ 387 (435)
|++ ...+.+++.++..+|+|++|+..+.
T Consensus 82 -P~~---~~~~~~la~~~~~~g~~~~A~~~~~ 109 (121)
T 1hxi_A 82 -PKD---IAVHAALAVSHTNEHNANAALASLR 109 (121)
T ss_dssp -TTC---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCC---HHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 333 3466789999999999999988764
No 179
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.75 E-value=1.1e-08 Score=81.79 Aligned_cols=95 Identities=13% Similarity=0.095 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhc
Q 013867 274 LAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLK 353 (435)
Q Consensus 274 l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k 353 (435)
...+.++|.+|..+|+|++|...|++++.+ +|+...++.|+|.+|..+|++++| +..|++++++.
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A------~~~~~~al~~~- 68 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITA--------QPQNPVGYSNKAMALIKLGEYTQA------IQMCQQGLRYT- 68 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHTSC-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHhcCHHHH------HHHHHHHHHhC-
Confidence 356789999999999999999999999987 455567899999999999998776 89999999875
Q ss_pred CCCCCCCc---hhhhhccHHHHHHHhcCHHHHhhHh
Q 013867 354 APPLESEG---VETKVDRTDIVALARGGYAEALSVQ 386 (435)
Q Consensus 354 ~~~~~hp~---~a~~l~nla~~~~a~G~yaeal~~~ 386 (435)
|++++ ....+.+++.++...|++.+++...
T Consensus 69 ---p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 69 ---STAEHVAIRSKLQYRLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp ---SSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSS
T ss_pred ---CCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHH
Confidence 23322 2556678888888888877766543
No 180
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.73 E-value=1.3e-07 Score=75.07 Aligned_cols=93 Identities=12% Similarity=0.098 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhc
Q 013867 274 LAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLK 353 (435)
Q Consensus 274 l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k 353 (435)
+..+.++|..+..+|+|++|..+|++++.+ .|.....+.++|.+|..+|++++| ...|++++++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A------~~~~~~~~~~~- 68 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKL--------DPHNHVLYSNRSAAYAKKGDYQKA------YEDGCKTVDLK- 68 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHH------HHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHhhccHHHH------HHHHHHHHHhC-
Confidence 356789999999999999999999999986 244456899999999999998776 89999999874
Q ss_pred CCCCCCCchhhhhccHHHHHHHhcCHHHHhhHhh
Q 013867 354 APPLESEGVETKVDRTDIVALARGGYAEALSVQQ 387 (435)
Q Consensus 354 ~~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~~ 387 (435)
|+....+.+++.++..+|+|++|.....
T Consensus 69 ------~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 96 (118)
T 1elw_A 69 ------PDWGKGYSRKAAALEFLNRFEEAKRTYE 96 (118)
T ss_dssp ------TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ------cccHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3334567789999999999999988763
No 181
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.72 E-value=9.2e-08 Score=79.69 Aligned_cols=96 Identities=17% Similarity=0.063 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhc
Q 013867 274 LAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLK 353 (435)
Q Consensus 274 l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k 353 (435)
...+..+|..+..+|+|++|.++|++++.+ .++++.....+.++|.+|..+|++++| +..|++++++.
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~~~~~a~~~~~~~~~~~A------~~~~~~~~~~~- 95 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGL-----DATPQDQAVLHRNRAACHLKLEDYDKA------ETEASKAIEKD- 95 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTS-----CCCHHHHHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-----cccchHHHHHHHHHHHHHHHHccHHHH------HHHHHHHHhhC-
Confidence 356789999999999999999999999975 567777899999999999999998776 89999999884
Q ss_pred CCCCCCCchhhhhccHHHHHHHhcCHHHHhhHhh
Q 013867 354 APPLESEGVETKVDRTDIVALARGGYAEALSVQQ 387 (435)
Q Consensus 354 ~~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~~ 387 (435)
|+....+.+++.++..+|+|++|+..+.
T Consensus 96 ------~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 123 (148)
T 2dba_A 96 ------GGDVKALYRRSQALEKLGRLDQAVLDLQ 123 (148)
T ss_dssp ------SCCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred ------ccCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3335567789999999999999887763
No 182
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.71 E-value=2e-08 Score=82.93 Aligned_cols=85 Identities=12% Similarity=0.141 Sum_probs=69.5
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhh
Q 013867 286 HMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETK 365 (435)
Q Consensus 286 ~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~ 365 (435)
.+|+|++|+++|++|+++ ++++|+...++.+||.+|..+|+|++| +..|++++++. |+....
T Consensus 2 ~~g~~~~A~~~~~~al~~-----~~~~p~~~~~~~~lg~~~~~~~~~~~A------~~~~~~al~~~-------p~~~~~ 63 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIAS-----GLQGKDLAECYLGLGSTFRTLGEYRKA------EAVLANGVKQF-------PNHQAL 63 (117)
T ss_dssp -----CCCHHHHHHHHSS-----CCCHHHHHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHC-------TTCHHH
T ss_pred CCCcHHHHHHHHHHHHHc-----CCCCccHHHHHHHHHHHHHHcCCHHHH------HHHHHHHHHhC-------CCchHH
Confidence 479999999999999984 466899999999999999999998876 89999999985 333456
Q ss_pred hccHHHHHHHhcCHHHHhhHhhh
Q 013867 366 VDRTDIVALARGGYAEALSVQQN 388 (435)
Q Consensus 366 l~nla~~~~a~G~yaeal~~~~~ 388 (435)
+.+++.++..+|+|++|+....+
T Consensus 64 ~~~l~~~~~~~g~~~~A~~~~~~ 86 (117)
T 3k9i_A 64 RVFYAMVLYNLGRYEQGVELLLK 86 (117)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 77899999999999999887644
No 183
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.68 E-value=4.2e-08 Score=77.40 Aligned_cols=92 Identities=13% Similarity=0.121 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCC
Q 013867 276 ATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAP 355 (435)
Q Consensus 276 ~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~ 355 (435)
.+.++|.+|..+|+|++|..+|++++.+ .|....++.++|.+|..+|++++| ...|++++++.
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~~a~~~~~~~~~~~A------~~~~~~a~~~~--- 70 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQL--------DPEESKYWLMKGKALYNLERYEEA------VDCYNYVINVI--- 70 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHTS---
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHh--------CcCCHHHHHHHHHHHHHccCHHHH------HHHHHHHHHhC---
Confidence 4578999999999999999999999986 244456789999999999998876 89999999875
Q ss_pred CCCCCchhhhhccHHHHHHHh-cCHHHHhhHh
Q 013867 356 PLESEGVETKVDRTDIVALAR-GGYAEALSVQ 386 (435)
Q Consensus 356 ~~~hp~~a~~l~nla~~~~a~-G~yaeal~~~ 386 (435)
++ ........+++.++..+ |+|++|+...
T Consensus 71 -~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~ 100 (112)
T 2kck_A 71 -ED-EYNKDVWAAKADALRYIEGKEVEAEIAE 100 (112)
T ss_dssp -CC-TTCHHHHHHHHHHHTTCSSCSHHHHHHH
T ss_pred -cc-cchHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 22 11345677899999999 9999998766
No 184
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.66 E-value=7.2e-08 Score=86.99 Aligned_cols=88 Identities=11% Similarity=0.117 Sum_probs=72.0
Q ss_pred HHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHH----------HHHHHHHHH
Q 013867 231 HATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFG----------DAEEILTRT 300 (435)
Q Consensus 231 ~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~----------eAe~l~~rA 300 (435)
...+.|++|.+.|++|+++ . |+ ...+++|+|.++..+|+|+ +|+..|++|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l-----------~-------P~--~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~A 72 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKS-----------N-------PL--DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEA 72 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHH-----------C-------TT--CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHH-----------C-------CC--CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHH
Confidence 4568999999999999999 1 11 1257899999999999875 888888888
Q ss_pred HHHHHHhhCCCChhHHHHHHHHHHHHHHhh-----------hhhhhhhhHHHHHHHHHHHHHh
Q 013867 301 LTKTEELFGSHHPKVGVVLTCLALMFRNKA-----------MQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 301 L~I~e~~lG~~HP~va~~L~nLA~ly~~qG-----------~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
|+| .|+.+.+++|||.+|..+| ++++| +..|+|||+|-
T Consensus 73 L~l--------dP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA------~~~~~kAl~l~ 121 (158)
T 1zu2_A 73 LLI--------DPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLA------TQFFQQAVDEQ 121 (158)
T ss_dssp HHH--------CTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH------HHHHHHHHHHC
T ss_pred HHh--------CcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHH------HHHHHHHHHhC
Confidence 887 5677788999999999986 55554 89999999996
No 185
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.65 E-value=1.9e-07 Score=71.91 Aligned_cols=82 Identities=17% Similarity=0.226 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcC
Q 013867 275 AATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKA 354 (435)
Q Consensus 275 ~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~ 354 (435)
..+.++|.+|..+|+|++|+.+|++++.+ +|+...++.++|.+|..+|++++| ...|++++++.
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A------~~~~~~a~~~~-- 73 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAWYNLGNAYYKQGDYDEA------IEYYQKALELD-- 73 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHhhHHHH------HHHHHHHHhcC--
Confidence 46789999999999999999999999986 355567899999999999998876 89999999984
Q ss_pred CCCCCCchhhhhccHHHHHHHhc
Q 013867 355 PPLESEGVETKVDRTDIVALARG 377 (435)
Q Consensus 355 ~~~~hp~~a~~l~nla~~~~a~G 377 (435)
|+......+++.++..+|
T Consensus 74 -----p~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 74 -----PNNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp -----TTCHHHHHHHHHHHHHHC
T ss_pred -----CCCHHHHHHHHHHHHhcC
Confidence 333445667777776554
No 186
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.64 E-value=9.3e-08 Score=78.13 Aligned_cols=83 Identities=14% Similarity=0.159 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHH
Q 013867 237 LLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVG 316 (435)
Q Consensus 237 ~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va 316 (435)
++|+..|++++++. + . ....+.+||.+|..+|+|++|+..|++++.+ +|+..
T Consensus 2 ~~a~~~~~~al~~~--------p-~-----------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~ 53 (115)
T 2kat_A 2 QAITERLEAMLAQG--------T-D-----------NMLLRFTLGKTYAEHEQFDAALPHLRAALDF--------DPTYS 53 (115)
T ss_dssp CCHHHHHHHHHTTT--------C-C-----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCH
T ss_pred hHHHHHHHHHHHhC--------C-C-----------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--------CCCcH
Confidence 46788888888761 1 1 1146789999999999999999999999986 45667
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhc
Q 013867 317 VVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLK 353 (435)
Q Consensus 317 ~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k 353 (435)
.++.+||.+|..+|++++| ...|++++++..
T Consensus 54 ~~~~~la~~~~~~g~~~~A------~~~~~~al~~~~ 84 (115)
T 2kat_A 54 VAWKWLGKTLQGQGDRAGA------RQAWESGLAAAQ 84 (115)
T ss_dssp HHHHHHHHHHHHHTCHHHH------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHH------HHHHHHHHHhcc
Confidence 7899999999999998876 899999999873
No 187
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.64 E-value=6.3e-08 Score=100.71 Aligned_cols=234 Identities=14% Similarity=0.097 Sum_probs=80.1
Q ss_pred ChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 013867 78 SDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYL 157 (435)
Q Consensus 78 s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~ 157 (435)
..|++++|..+++++ +||. +.+.||..+.++|++.+|++.|.++-+.. + ...+...+.
T Consensus 15 ~~~~ld~A~~fae~~----------~~~~---vWs~La~A~l~~g~~~eAIdsfika~D~~----~-----y~~V~~~ae 72 (449)
T 1b89_A 15 HIGNLDRAYEFAERC----------NEPA---VWSQLAKAQLQKGMVKEAIDSYIKADDPS----S-----YMEVVQAAN 72 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC----------CChH---HHHHHHHHHHHcCCHHHHHHHHHcCCCHH----H-----HHHHHHHHH
Confidence 356789999999986 4554 77799999999999999999998863321 1 111112222
Q ss_pred hcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchH
Q 013867 158 QLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFL 237 (435)
Q Consensus 158 ~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~ 237 (435)
..|.++.|..+.+.+...... + .-+.+-++.+++ + |+..++..........+..++|..|..+|+|+
T Consensus 73 ~~g~~EeAi~yl~~ark~~~~--~--~i~~~Li~~Y~K--------l-g~l~e~e~f~~~pn~~a~~~IGd~~~~~g~ye 139 (449)
T 1b89_A 73 TSGNWEELVKYLQMARKKARE--S--YVETELIFALAK--------T-NRLAELEEFINGPNNAHIQQVGDRCYDEKMYD 139 (449)
T ss_dssp -------------------------------------------------CHHHHTTTTTCC----------------CTT
T ss_pred hCCCHHHHHHHHHHHHHhCcc--c--hhHHHHHHHHHH--------h-CCHHHHHHHHcCCcHHHHHHHHHHHHHcCCHH
Confidence 345555554433322221100 0 000011111111 1 33333332332222346677888999999999
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--HHh------hC
Q 013867 238 LAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKT--EEL------FG 309 (435)
Q Consensus 238 eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~--e~~------lG 309 (435)
+|..+|.++ . . ...||.+|..+|+|++|.+.|++|..+. .++ .|
T Consensus 140 eA~~~Y~~a--------~-----n---------------~~~LA~~L~~Lg~yq~AVea~~KA~~~~~Wk~v~~aCv~~~ 191 (449)
T 1b89_A 140 AAKLLYNNV--------S-----N---------------FGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGK 191 (449)
T ss_dssp THHHHHHHT--------T-----C---------------HHHHHHHHHTTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHh--------h-----h---------------HHHHHHHHHHhccHHHHHHHHHHcCCchhHHHHHHHHHHcC
Confidence 999999966 0 1 3589999999999999999999996551 110 01
Q ss_pred ------------CCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHH--H
Q 013867 310 ------------SHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVAL--A 375 (435)
Q Consensus 310 ------------~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~--a 375 (435)
..||+-.. .+..+|.++|++++| ..+++++|.+-. -|-+ +...++++|. .
T Consensus 192 ef~lA~~~~l~L~~~ad~l~---~lv~~Yek~G~~eEa------i~lLe~aL~le~----ah~~---~ftel~il~~ky~ 255 (449)
T 1b89_A 192 EFRLAQMCGLHIVVHADELE---ELINYYQDRGYFEEL------ITMLEAALGLER----AHMG---MFTELAILYSKFK 255 (449)
T ss_dssp CHHHHHHTTTTTTTCHHHHH---HHHHHHHHTTCHHHH------HHHHHHHTTSTT----CCHH---HHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHhCHhhHH---HHHHHHHHCCCHHHH------HHHHHHHhCCcH----HHHH---HHHHHHHHHHhcC
Confidence 15666533 477889999997766 777877764431 2222 4445577765 5
Q ss_pred hcCHHHHhhHhhhhh
Q 013867 376 RGGYAEALSVQQNRK 390 (435)
Q Consensus 376 ~G~yaeal~~~~~r~ 390 (435)
-|+.-|.+..+..|.
T Consensus 256 p~k~~ehl~~~~~~i 270 (449)
T 1b89_A 256 PQKMREHLELFWSRV 270 (449)
T ss_dssp HHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHHHh
Confidence 567777777765544
No 188
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.48 E-value=8.2e-07 Score=71.66 Aligned_cols=70 Identities=13% Similarity=0.143 Sum_probs=58.6
Q ss_pred cchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 013867 217 GCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEI 296 (435)
Q Consensus 217 ~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l 296 (435)
|....+..++|.+|..+|+|++|+..|++++++. + .. ..++.+||.+|..+|+|++|+..
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------p-~~-----------~~a~~~lg~~~~~~g~~~~A~~~ 63 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETD--------P-DY-----------VGTYYHLGKLYERLDRTDDAIDT 63 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------T-TC-----------THHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------C-Cc-----------HHHHHHHHHHHHHcCCHHHHHHH
Confidence 4556778889999999999999999999999981 1 11 13578999999999999999999
Q ss_pred HHHHHHHHHH
Q 013867 297 LTRTLTKTEE 306 (435)
Q Consensus 297 ~~rAL~I~e~ 306 (435)
|++++.+..+
T Consensus 64 ~~~al~l~~~ 73 (100)
T 3ma5_A 64 YAQGIEVARE 73 (100)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHhhhhc
Confidence 9999998654
No 189
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.37 E-value=1.1e-06 Score=70.89 Aligned_cols=65 Identities=14% Similarity=0.194 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhc
Q 013867 275 AATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLK 353 (435)
Q Consensus 275 ~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k 353 (435)
..+.+||.+|..+|+|++|+..|++++.+ .|+...++.+||.+|..+|++++| +..|++++++..
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A------~~~~~~al~l~~ 72 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVET--------DPDYVGTYYHLGKLYERLDRTDDA------IDTYAQGIEVAR 72 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCTHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHH------HHHHHHHHhhhh
Confidence 46789999999999999999999999987 355556899999999999998876 899999999974
No 190
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.35 E-value=0.00016 Score=71.32 Aligned_cols=239 Identities=10% Similarity=0.005 Sum_probs=160.3
Q ss_pred HHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhh
Q 013867 61 VVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESG--NYVEAIEKLQKVENFK 138 (435)
Q Consensus 61 vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qG--ky~eA~~l~~ral~i~ 138 (435)
.-.++.++...... ..+..++|+.+++++|.+. |+-.++.+..+.++...| +|++++.++.+++.+.
T Consensus 31 ~y~~~~~~~~a~~~---~~e~s~~aL~~t~~~L~~n--------P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n 99 (306)
T 3dra_A 31 DYKQIMGLLLALMK---AEEYSERALHITELGINEL--------ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN 99 (306)
T ss_dssp HHHHHHHHHHHHHH---TTCCSHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHC--------cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC
Confidence 33455566665532 2344569999999999776 667888999999999999 9999999999986654
Q ss_pred hhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHH---HHhcC-CCchhchhhHHHHHHHHHHHHHHhcCCCcccccc
Q 013867 139 NSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQL---CEKHK-PENYKTYGAVNSRANAVKGLVELAHGNLESGLQE 214 (435)
Q Consensus 139 e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l---~~~~~-~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~ 214 (435)
.+.-.+ ...+..-+ ....+ ...+. +++....+++..
T Consensus 100 Pk~y~a-----------------------W~~R~~iL~~~~~~l~~~~~~~--~EL~~~~~~l~~--------------- 139 (306)
T 3dra_A 100 EKNYQI-----------------------WNYRQLIIGQIMELNNNDFDPY--REFDILEAMLSS--------------- 139 (306)
T ss_dssp TTCCHH-----------------------HHHHHHHHHHHHHHTTTCCCTH--HHHHHHHHHHHH---------------
T ss_pred cccHHH-----------------------HHHHHHHHHHHHHhccccCCHH--HHHHHHHHHHHh---------------
Confidence 433221 11111111 11111 01122 344444444331
Q ss_pred cccchhHHHHHHHHHHHHhhchH--HHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCC---
Q 013867 215 EEGCTGSAALSYGEYLHATRNFL--LAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGN--- 289 (435)
Q Consensus 215 ~~~~~~~~a~~la~~~~~~G~y~--eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~--- 289 (435)
+|....+-...+.++...|+|+ ++.+++.+++++ +.. | -.+.++.+.++...|+
T Consensus 140 -~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~-----------d~~--N-------~sAW~~R~~ll~~l~~~~~ 198 (306)
T 3dra_A 140 -DPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT-----------DLK--N-------NSAWSHRFFLLFSKKHLAT 198 (306)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH-----------CTT--C-------HHHHHHHHHHHHSSGGGCC
T ss_pred -CCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh-----------CCC--C-------HHHHHHHHHHHHhccccch
Confidence 1334455555667788889999 999999999988 111 1 1367888999999998
Q ss_pred ---HHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhh
Q 013867 290 ---FGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKV 366 (435)
Q Consensus 290 ---y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l 366 (435)
|+++.+++.+++.+ ||+=-++.++++.++...|+..++ ...++.+++++-+ ..|.....+
T Consensus 199 ~~~~~eEl~~~~~aI~~--------~p~n~SaW~y~~~ll~~~~~~~~~-----~~~~~~~~~~~~~----~~~~s~~al 261 (306)
T 3dra_A 199 DNTIDEELNYVKDKIVK--------CPQNPSTWNYLLGIHERFDRSITQ-----LEEFSLQFVDLEK----DQVTSSFAL 261 (306)
T ss_dssp HHHHHHHHHHHHHHHHH--------CSSCHHHHHHHHHHHHHTTCCGGG-----GHHHHHTTEEGGG----TEESCHHHH
T ss_pred hhhHHHHHHHHHHHHHh--------CCCCccHHHHHHHHHHhcCCChHH-----HHHHHHHHHhccC----CCCCCHHHH
Confidence 88888888888875 788889999999999999986543 2556665554331 123233367
Q ss_pred ccHHHHHHHhcCHHHHhhHhhh
Q 013867 367 DRTDIVALARGGYAEALSVQQN 388 (435)
Q Consensus 367 ~nla~~~~a~G~yaeal~~~~~ 388 (435)
..++.++..+|++++|+..+..
T Consensus 262 ~~la~~~~~~~~~~~A~~~~~~ 283 (306)
T 3dra_A 262 ETLAKIYTQQKKYNESRTVYDL 283 (306)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHccCCHHHHHHHHHH
Confidence 7788888888999888887733
No 191
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.32 E-value=6.5e-06 Score=66.95 Aligned_cols=70 Identities=14% Similarity=0.051 Sum_probs=58.7
Q ss_pred cchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 013867 217 GCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEI 296 (435)
Q Consensus 217 ~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l 296 (435)
|....+..++|.+|..+|+|++|+.+|++++++. + . ...++.+||.+|..+|++++|...
T Consensus 16 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------p-~-----------~~~~~~~la~~~~~~g~~~~A~~~ 75 (115)
T 2kat_A 16 TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD--------P-T-----------YSVAWKWLGKTLQGQGDRAGARQA 75 (115)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------T-T-----------CHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC--------C-C-----------cHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3445677889999999999999999999999881 1 1 124578999999999999999999
Q ss_pred HHHHHHHHHH
Q 013867 297 LTRTLTKTEE 306 (435)
Q Consensus 297 ~~rAL~I~e~ 306 (435)
|++++.+...
T Consensus 76 ~~~al~~~~~ 85 (115)
T 2kat_A 76 WESGLAAAQS 85 (115)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHhccc
Confidence 9999998654
No 192
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.31 E-value=2.8e-06 Score=66.93 Aligned_cols=66 Identities=11% Similarity=0.114 Sum_probs=54.1
Q ss_pred HHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 013867 225 SYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALA-ATFALGQLEAHMGNFGDAEEILTRTLTK 303 (435)
Q Consensus 225 ~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~-~l~nLa~ly~~qG~y~eAe~l~~rAL~I 303 (435)
+.|..+..+|+|++|+.+|++++++. |+ ... .+.++|.+|..+|+|++|+..|++++.+
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~------------------p~--~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTE------------------PV--GKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC------------------SS--THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC------------------CC--cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 45777889999999999999999881 11 124 6789999999999999999999999976
Q ss_pred HHHhhCCCChhH
Q 013867 304 TEELFGSHHPKV 315 (435)
Q Consensus 304 ~e~~lG~~HP~v 315 (435)
.|+++.+
T Consensus 65 -----~p~~~~~ 71 (99)
T 2kc7_A 65 -----NPDSPAL 71 (99)
T ss_dssp -----CTTSTHH
T ss_pred -----CCCcHHH
Confidence 5666654
No 193
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.25 E-value=3.5e-05 Score=76.50 Aligned_cols=195 Identities=15% Similarity=0.094 Sum_probs=108.7
Q ss_pred HHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHHHhcCCC
Q 013867 85 GMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKN--SILGVRVAAMEALAGLYLQLGQD 162 (435)
Q Consensus 85 A~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e--~~L~i~vaale~L~g~~~~~g~~ 162 (435)
|+..+++.++. .+++ -.++..+|.+|..+|++++|+..+++.+...+ ..+... -.+.-+++.+|+.
T Consensus 85 a~~~l~~l~~~-------~~~~-~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~----~l~vqi~L~~~r~ 152 (310)
T 3mv2_B 85 NIEELENLLKD-------KQNS-PYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELL----LLAIEVALLNNNV 152 (310)
T ss_dssp CCHHHHHTTTT-------SCCC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHH----HHHHHHHHHTTCH
T ss_pred HHHHHHHHHhc-------CCCC-cHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHH----HHHHHHHHHCCCH
Confidence 66666665532 1222 33456899999999999999999998744322 111111 1112334444444
Q ss_pred cchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHH--HHHHhh--chHH
Q 013867 163 DTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGE--YLHATR--NFLL 238 (435)
Q Consensus 163 ~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~--~~~~~G--~y~e 238 (435)
+.|.....++ +. .-++.-++ --.+...+++ +...+| +|.+
T Consensus 153 d~A~k~l~~~----------------------~~-------~~~d~~~~-------~d~~l~~Laea~v~l~~g~~~~q~ 196 (310)
T 3mv2_B 153 STASTIFDNY----------------------TN-------AIEDTVSG-------DNEMILNLAESYIKFATNKETATS 196 (310)
T ss_dssp HHHHHHHHHH----------------------HH-------HSCHHHHH-------HHHHHHHHHHHHHHHHHTCSTTTH
T ss_pred HHHHHHHHHH----------------------Hh-------cCcccccc-------chHHHHHHHHHHHHHHhCCccHHH
Confidence 3333221111 00 00000000 0012222332 233445 9999
Q ss_pred HHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-----hhCCCCh
Q 013867 239 AKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEE-----LFGSHHP 313 (435)
Q Consensus 239 Ae~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~-----~lG~~HP 313 (435)
|..+|++..+- .+... +...+.| ++..+|+|+||+..+++.++.+=. ...++|
T Consensus 197 A~~~f~El~~~---------~p~~~---------~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~- 254 (310)
T 3mv2_B 197 NFYYYEELSQT---------FPTWK---------TQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYK- 254 (310)
T ss_dssp HHHHHHHHHTT---------SCSHH---------HHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSH-
T ss_pred HHHHHHHHHHh---------CCCcc---------cHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCC-
Confidence 99999995422 11100 1123344 799999999999999977776422 223445
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchh
Q 013867 314 KVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVE 363 (435)
Q Consensus 314 ~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a 363 (435)
+.+|.|+..++..+|+ +| +.+++++.+. .|+||-+.
T Consensus 255 --~~~LaN~i~l~~~lgk--~a------~~l~~qL~~~----~P~hp~i~ 290 (310)
T 3mv2_B 255 --PTFLANQITLALMQGL--DT------EDLTNQLVKL----DHEHAFIK 290 (310)
T ss_dssp --HHHHHHHHHHHHHTTC--TT------HHHHHHHHHT----TCCCHHHH
T ss_pred --HHHHHHHHHHHHHhCh--HH------HHHHHHHHHh----CCCChHHH
Confidence 5568888888888887 44 7787777665 48888643
No 194
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.17 E-value=1.8e-05 Score=64.87 Aligned_cols=79 Identities=11% Similarity=0.152 Sum_probs=62.4
Q ss_pred HHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 013867 224 LSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTK 303 (435)
Q Consensus 224 ~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I 303 (435)
..+|..+..+|+|++|+.+|++|+...... +..+. + ....+.+||..|..+|++++|..+|++|+.+
T Consensus 9 ~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~------~~~~~-----~--~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 9 FELGKVAYTEADYYHTELWMEQALRQLDEG------EISTI-----D--KVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTT------CCCSS-----C--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhhcc------CCCcc-----c--HHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 467889999999999999999999985321 11221 1 2356789999999999999999999999985
Q ss_pred HHHhhCCCChhHHHHHHHHH
Q 013867 304 TEELFGSHHPKVGVVLTCLA 323 (435)
Q Consensus 304 ~e~~lG~~HP~va~~L~nLA 323 (435)
.|+|+.+ ++|++
T Consensus 76 -----~P~~~~~---~~n~~ 87 (104)
T 2v5f_A 76 -----DPEHQRA---NGNLK 87 (104)
T ss_dssp -----CTTCHHH---HHHHH
T ss_pred -----CCCCHHH---HhhHH
Confidence 6777665 77776
No 195
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.16 E-value=7.5e-06 Score=73.75 Aligned_cols=67 Identities=13% Similarity=0.224 Sum_probs=54.8
Q ss_pred cchhHHHHHHHHHHHHhhch----------HHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHH
Q 013867 217 GCTGSAALSYGEYLHATRNF----------LLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAH 286 (435)
Q Consensus 217 ~~~~~~a~~la~~~~~~G~y----------~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~ 286 (435)
|....+..++|.++..+|+| ++|+..|++||+| . |+ ...+++|||.+|..
T Consensus 33 P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l-----------d-------P~--~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 33 PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI-----------D-------PK--KDEAVWCIGNAYTS 92 (158)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH-----------C-------TT--CHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh-----------C-------cC--cHHHHHHHHHHHHH
Confidence 44566778888888888876 5999999999999 1 11 12578999999999
Q ss_pred cC-----------CHHHHHHHHHHHHHH
Q 013867 287 MG-----------NFGDAEEILTRTLTK 303 (435)
Q Consensus 287 qG-----------~y~eAe~l~~rAL~I 303 (435)
+| +|++|+.+|++|++|
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 85 899999999999998
No 196
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.07 E-value=1.4e-05 Score=68.68 Aligned_cols=107 Identities=14% Similarity=0.120 Sum_probs=84.7
Q ss_pred hhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCC
Q 013867 233 TRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHH 312 (435)
Q Consensus 233 ~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~H 312 (435)
.+++++|..+|++|.+. + + . .+. ||.+|...+.+++|..+|++|.+. .|
T Consensus 8 ~~d~~~A~~~~~~aa~~-----g---~-~-------------~a~--lg~~y~~g~~~~~A~~~~~~Aa~~-------g~ 56 (138)
T 1klx_A 8 KKDLKKAIQYYVKACEL-----N---E-M-------------FGC--LSLVSNSQINKQKLFQYLSKACEL-------NS 56 (138)
T ss_dssp HHHHHHHHHHHHHHHHT-----T---C-T-------------THH--HHHHTCTTSCHHHHHHHHHHHHHT-------TC
T ss_pred ccCHHHHHHHHHHHHcC-----C---C-H-------------hhh--HHHHHHcCCCHHHHHHHHHHHHcC-------CC
Confidence 47899999999999865 1 1 1 122 999999999999999999999875 33
Q ss_pred hhHHHHHHHHHHHHHH----hhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHH----hcCHHHHhh
Q 013867 313 PKVGVVLTCLALMFRN----KAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALA----RGGYAEALS 384 (435)
Q Consensus 313 P~va~~L~nLA~ly~~----qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a----~G~yaeal~ 384 (435)
..+++|||.+|.. .+++++| ..+|++|.+. ++ .....|++.+|.. .+++++|+.
T Consensus 57 ---~~a~~~Lg~~y~~G~g~~~d~~~A------~~~~~~Aa~~------g~---~~a~~~Lg~~y~~G~g~~~d~~~A~~ 118 (138)
T 1klx_A 57 ---GNGCRFLGDFYENGKYVKKDLRKA------AQYYSKACGL------ND---QDGCLILGYKQYAGKGVVKNEKQAVK 118 (138)
T ss_dssp ---HHHHHHHHHHHHHCSSSCCCHHHH------HHHHHHHHHT------TC---HHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred ---HHHHHHHHHHHHcCCCCCccHHHH------HHHHHHHHcC------CC---HHHHHHHHHHHHCCCCCCcCHHHHHH
Confidence 5789999999998 7776665 8999999874 23 3366789999988 778888877
Q ss_pred Hhhh
Q 013867 385 VQQN 388 (435)
Q Consensus 385 ~~~~ 388 (435)
.+.+
T Consensus 119 ~~~~ 122 (138)
T 1klx_A 119 TFEK 122 (138)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7644
No 197
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.06 E-value=0.00019 Score=70.84 Aligned_cols=189 Identities=9% Similarity=-0.052 Sum_probs=123.7
Q ss_pred cHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHH----HHc---CCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 013867 81 SYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLL----YES---GNYVEAIEKLQKVENFKNSILGVRVAAMEALA 153 (435)
Q Consensus 81 ~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly----~~q---Gky~eA~~l~~ral~i~e~~L~i~vaale~L~ 153 (435)
.|++++.+++++|.+. |...++.+..+.++ ... ++++++++++.+++.+..+...+ +.
T Consensus 84 ~~~eeL~~~~~~L~~n--------Pk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~a----W~--- 148 (306)
T 3dra_A 84 NLYDELDWCEEIALDN--------EKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHV----WS--- 148 (306)
T ss_dssp CHHHHHHHHHHHHHHC--------TTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHH----HH---
T ss_pred cHHHHHHHHHHHHHHC--------cccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHH----HH---
Confidence 8999999999999654 55566777788887 666 89999999999987665444221 11
Q ss_pred HHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHh
Q 013867 154 GLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHAT 233 (435)
Q Consensus 154 g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~ 233 (435)
.+.. ++..-+. ++..+++....++|.. ++....+-...+.++...
T Consensus 149 ----------------~R~~-vl~~l~~--~~~~~EL~~~~~~i~~----------------d~~N~sAW~~R~~ll~~l 193 (306)
T 3dra_A 149 ----------------YRKW-LVDTFDL--HNDAKELSFVDKVIDT----------------DLKNNSAWSHRFFLLFSK 193 (306)
T ss_dssp ----------------HHHH-HHHHTTC--TTCHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHSS
T ss_pred ----------------HHHH-HHHHhcc--cChHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHhc
Confidence 1111 1111111 2111233333333321 122223334445556666
Q ss_pred hc------hHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHHHH
Q 013867 234 RN------FLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGD-AEEILTRTLTKTEE 306 (435)
Q Consensus 234 G~------y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~e-Ae~l~~rAL~I~e~ 306 (435)
|+ |+++..++.+++.+ .+. | -.+.+.++.++...|+..+ ...+..+++.+.
T Consensus 194 ~~~~~~~~~~eEl~~~~~aI~~-----------~p~--n-------~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~-- 251 (306)
T 3dra_A 194 KHLATDNTIDEELNYVKDKIVK-----------CPQ--N-------PSTWNYLLGIHERFDRSITQLEEFSLQFVDLE-- 251 (306)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHH-----------CSS--C-------HHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGG--
T ss_pred cccchhhhHHHHHHHHHHHHHh-----------CCC--C-------ccHHHHHHHHHHhcCCChHHHHHHHHHHHhcc--
Confidence 66 99999999999988 111 1 1467899999999999655 666777777642
Q ss_pred hhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHH
Q 013867 307 LFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALE 350 (435)
Q Consensus 307 ~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~ 350 (435)
+.+|.-.-++..||.+|..+|+.++| ..+|+++.+
T Consensus 252 ---~~~~~s~~al~~la~~~~~~~~~~~A------~~~~~~l~~ 286 (306)
T 3dra_A 252 ---KDQVTSSFALETLAKIYTQQKKYNES------RTVYDLLKS 286 (306)
T ss_dssp ---GTEESCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHH
T ss_pred ---CCCCCCHHHHHHHHHHHHccCCHHHH------HHHHHHHHh
Confidence 33566667899999999999997766 888988775
No 198
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.03 E-value=0.0002 Score=71.10 Aligned_cols=188 Identities=10% Similarity=0.019 Sum_probs=111.9
Q ss_pred HHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHH
Q 013867 66 INYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVR 145 (435)
Q Consensus 66 ~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~ 145 (435)
.-+|..+. ..|+|++|+.++++++...+ .+.....+.-++.+|..+|+.+.|...+++..++.+.....+
T Consensus 104 ~~la~i~~----~~g~~eeAL~~l~~~i~~~~------~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~ 173 (310)
T 3mv2_B 104 YLLATAQA----ILGDLDKSLETCVEGIDNDE------AEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGD 173 (310)
T ss_dssp HHHHHHHH----HHTCHHHHHHHHHHHHTSSC------STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHH----HcCCHHHHHHHHHHHhccCC------CcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccc
Confidence 45555553 26899999999999985442 146778888899999999999999999998765543100000
Q ss_pred HHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHH
Q 013867 146 VAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALS 225 (435)
Q Consensus 146 vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~ 225 (435)
+..-..+++-.+.+....+ ++. ++.+.+.. +...+|+ ........+
T Consensus 174 ----------------d~~l~~Laea~v~l~~g~~--~~q--~A~~~f~E--------l~~~~p~------~~~~~lLln 219 (310)
T 3mv2_B 174 ----------------NEMILNLAESYIKFATNKE--TAT--SNFYYYEE--------LSQTFPT------WKTQLGLLN 219 (310)
T ss_dssp ----------------HHHHHHHHHHHHHHHHTCS--TTT--HHHHHHHH--------HHTTSCS------HHHHHHHHH
T ss_pred ----------------hHHHHHHHHHHHHHHhCCc--cHH--HHHHHHHH--------HHHhCCC------cccHHHHHH
Confidence 1110111222223332211 233 23322322 2222221 001123333
Q ss_pred HHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 013867 226 YGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTE 305 (435)
Q Consensus 226 la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e 305 (435)
++..+|+|++|+..+++.++..=+.. .+.... |++ ..++.|+..+...+|+ +|+++++|+.+.
T Consensus 220 ---~~~~~g~~~eAe~~L~~l~~~~p~~~---~k~~~~-----p~~--~~~LaN~i~l~~~lgk--~a~~l~~qL~~~-- 282 (310)
T 3mv2_B 220 ---LHLQQRNIAEAQGIVELLLSDYYSVE---QKENAV-----LYK--PTFLANQITLALMQGL--DTEDLTNQLVKL-- 282 (310)
T ss_dssp ---HHHHHTCHHHHHHHHHHHHSHHHHTT---TCHHHH-----SSH--HHHHHHHHHHHHHTTC--TTHHHHHHHHHT--
T ss_pred ---HHHHcCCHHHHHHHHHHHHHhccccc---ccccCC-----CCC--HHHHHHHHHHHHHhCh--HHHHHHHHHHHh--
Confidence 68899999999999997776621100 000000 222 2467799999999998 999999988764
Q ss_pred HhhCCCChhHHH
Q 013867 306 ELFGSHHPKVGV 317 (435)
Q Consensus 306 ~~lG~~HP~va~ 317 (435)
-|+||-+..
T Consensus 283 ---~P~hp~i~d 291 (310)
T 3mv2_B 283 ---DHEHAFIKH 291 (310)
T ss_dssp ---TCCCHHHHH
T ss_pred ---CCCChHHHH
Confidence 599998754
No 199
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.01 E-value=1.8e-05 Score=62.23 Aligned_cols=61 Identities=15% Similarity=0.125 Sum_probs=54.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHH-HHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 278 FALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGV-VLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 278 ~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~-~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
.++|..|..+|+|++|...|++++.+ +|+-.. .+.++|.+|..+|++++| +..|++++++.
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~lg~~~~~~~~~~~A------~~~~~~al~~~ 65 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQT--------EPVGKDEAYYLMGNAYRKLGDWQKA------LNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH--------CSSTHHHHHHHHHHHHHHHTCHHHH------HHHHHHHHHHC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHHcCCHHHH------HHHHHHHHhcC
Confidence 47899999999999999999999986 455556 899999999999998776 89999999885
No 200
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=97.98 E-value=3.5e-06 Score=87.64 Aligned_cols=103 Identities=8% Similarity=-0.052 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCC
Q 013867 276 ATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAP 355 (435)
Q Consensus 276 ~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~ 355 (435)
+++++|..+.++|+|++|..+|.++ ..+.+||..|...|+|++| ...|++|
T Consensus 124 a~~~IGd~~~~~g~yeeA~~~Y~~a----------------~n~~~LA~~L~~Lg~yq~A------Vea~~KA------- 174 (449)
T 1b89_A 124 HIQQVGDRCYDEKMYDAAKLLYNNV----------------SNFGRLASTLVHLGEYQAA------VDGARKA------- 174 (449)
T ss_dssp -------------CTTTHHHHHHHT----------------TCHHHHHHHHHTTTCHHHH------HHHHHHH-------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh----------------hhHHHHHHHHHHhccHHHH------HHHHHHc-------
Confidence 5667777777777777777777766 3667777777777776655 6667766
Q ss_pred CCCCCchhhhhccHHHHHHHhcCHHHHhhHhhhhhhHHHHHHHHHHHHhcccchhHH
Q 013867 356 PLESEGVETKVDRTDIVALARGGYAEALSVQQNRKDEGERMKRWAEAAWRNRRVSLA 412 (435)
Q Consensus 356 ~~~hp~~a~~l~nla~~~~a~G~yaeal~~~~~r~~eae~~~~~a~~~~~~~r~~l~ 412 (435)
..|.+- .....+|...|++..|.....+=..-++.+.....-+-+.+++..+
T Consensus 175 --~~~~~W---k~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEa 226 (449)
T 1b89_A 175 --NSTRTW---KEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEEL 226 (449)
T ss_dssp --TCHHHH---HHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred --CCchhH---HHHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHH
Confidence 122222 2233556677777777554422112233343444556667777666
No 201
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.98 E-value=2.5e-05 Score=67.05 Aligned_cols=88 Identities=9% Similarity=0.033 Sum_probs=74.1
Q ss_pred HHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHH
Q 013867 226 YGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAH----MGNFGDAEEILTRTL 301 (435)
Q Consensus 226 la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~----qG~y~eAe~l~~rAL 301 (435)
+|.+|...+.+++|..+|++|.+. + . ..+.++||.+|.. .+++++|..+|++|.
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~-----g-----~------------~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa 88 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACEL-----N-----S------------GNGCRFLGDFYENGKYVKKDLRKAAQYYSKAC 88 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHT-----T-----C------------HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcC-----C-----C------------HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHH
Confidence 788888888999999999999865 2 1 1467899999999 999999999999998
Q ss_pred HHHHHhhCCCChhHHHHHHHHHHHHHH----hhhhhhhhhhHHHHHHHHHHHHH
Q 013867 302 TKTEELFGSHHPKVGVVLTCLALMFRN----KAMQEHSSALLIQEGLYRRALEF 351 (435)
Q Consensus 302 ~I~e~~lG~~HP~va~~L~nLA~ly~~----qG~~e~A~~~~~Ae~Ly~rAL~I 351 (435)
+. .| ..+++|||.+|.. .+++++| ..+|++|.+.
T Consensus 89 ~~-------g~---~~a~~~Lg~~y~~G~g~~~d~~~A------~~~~~~Aa~~ 126 (138)
T 1klx_A 89 GL-------ND---QDGCLILGYKQYAGKGVVKNEKQA------VKTFEKACRL 126 (138)
T ss_dssp HT-------TC---HHHHHHHHHHHHHTSSSCCCHHHH------HHHHHHHHHT
T ss_pred cC-------CC---HHHHHHHHHHHHCCCCCCcCHHHH------HHHHHHHHHC
Confidence 64 23 5679999999998 7786665 8999999886
No 202
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.83 E-value=6.2e-05 Score=61.57 Aligned_cols=80 Identities=16% Similarity=0.123 Sum_probs=62.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCC
Q 013867 277 TFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPP 356 (435)
Q Consensus 277 l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~ 356 (435)
.+.||..+..+|+|.+|...|++|+.....--. .-+....++.+||.+|..+|++++| ..+|++++.+.
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~-~~~~~~~i~~~L~~~~~~~g~~~~A------~~~~~~al~l~---- 76 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEI-STIDKVSVLDYLSYAVYQQGDLDKA------LLLTKKLLELD---- 76 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC-CSSCHHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHC----
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCC-CcccHHHHHHHHHHHHHHccCHHHH------HHHHHHHHhcC----
Confidence 468999999999999999999999988753211 1134568889999999999998776 89999999874
Q ss_pred CCCCchhhhhccHH
Q 013867 357 LESEGVETKVDRTD 370 (435)
Q Consensus 357 ~~hp~~a~~l~nla 370 (435)
|+|+. .++|+.
T Consensus 77 P~~~~---~~~n~~ 87 (104)
T 2v5f_A 77 PEHQR---ANGNLK 87 (104)
T ss_dssp TTCHH---HHHHHH
T ss_pred CCCHH---HHhhHH
Confidence 55544 356665
No 203
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.68 E-value=0.0006 Score=72.54 Aligned_cols=177 Identities=8% Similarity=-0.023 Sum_probs=123.0
Q ss_pred hcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhhhhhHHHHHHHH
Q 013867 80 ESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGN----------YVEAIEKLQKVENFKNSILGVRVAAM 149 (435)
Q Consensus 80 G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGk----------y~eA~~l~~ral~i~e~~L~i~vaal 149 (435)
...++|+.++++++.+. |+-.++.+..+.++...|+ |++|++.+.+++.+..+.-
T Consensus 43 ~~~eeal~~~~~~l~~n--------P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y------- 107 (567)
T 1dce_A 43 ELDESVLELTSQILGAN--------PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSY------- 107 (567)
T ss_dssp CCSHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCH-------
T ss_pred CCCHHHHHHHHHHHHHC--------chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCH-------
Confidence 44568899999999766 6678889999999999999 9999999998865443321
Q ss_pred HHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHH
Q 013867 150 EALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEY 229 (435)
Q Consensus 150 e~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~ 229 (435)
..+..+..- +..-+...|+ +++....+++.. +|....+-...+.+
T Consensus 108 ----------------~aW~hR~w~-l~~l~~~~~~--~el~~~~k~l~~----------------d~~N~~aW~~R~~~ 152 (567)
T 1dce_A 108 ----------------GTWHHRCWL-LSRLPEPNWA--RELELCARFLEA----------------DERNFHCWDYRRFV 152 (567)
T ss_dssp ----------------HHHHHHHHH-HHTCSSCCHH--HHHHHHHHHHHH----------------CTTCHHHHHHHHHH
T ss_pred ----------------HHHHHHHHH-HHHcccccHH--HHHHHHHHHHhh----------------ccccccHHHHHHHH
Confidence 122233222 2222211122 455555555552 13333455556677
Q ss_pred HHHhh-chHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHc--------------CCHHHHH
Q 013867 230 LHATR-NFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHM--------------GNFGDAE 294 (435)
Q Consensus 230 ~~~~G-~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~q--------------G~y~eAe 294 (435)
+...| .|++|..++.+++++ .+. | ..+.++.+.++..+ ++|++|.
T Consensus 153 l~~l~~~~~~el~~~~~~I~~-----------~p~--n-------~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel 212 (567)
T 1dce_A 153 AAQAAVAPAEELAFTDSLITR-----------NFS--N-------YSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKEL 212 (567)
T ss_dssp HHHTCCCHHHHHHHHHTTTTT-----------TCC--C-------HHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHH
T ss_pred HHHcCCChHHHHHHHHHHHHH-----------CCC--C-------ccHHHHHHHHHHhhcccccccccccccHHHHHHHH
Confidence 88888 899999999999876 111 1 24678899998885 6678888
Q ss_pred HHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhh
Q 013867 295 EILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEH 334 (435)
Q Consensus 295 ~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~ 334 (435)
+++.+|+.+ .|+-..+.++++.++...+++++
T Consensus 213 ~~~~~ai~~--------~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 213 ELVQNAFFT--------DPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp HHHHHHHHH--------CSSCSHHHHHHHHHHSCCCCCSC
T ss_pred HHHHHHHhh--------CCCCccHHHHHHHHHhcCCCccc
Confidence 888888876 35666789999999999998765
No 204
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.59 E-value=0.00064 Score=55.05 Aligned_cols=85 Identities=8% Similarity=-0.045 Sum_probs=64.2
Q ss_pred cchhHHHHHHHHHHHHhhc---hHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHH
Q 013867 217 GCTGSAALSYGEYLHATRN---FLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDA 293 (435)
Q Consensus 217 ~~~~~~a~~la~~~~~~G~---y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eA 293 (435)
|....+...+|.++.-.++ .++|..++++||++ . |+ .+.++..||.++..+|+|++|
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~-----------d-------p~--~~rA~~~lg~~~~~~g~y~~A 62 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL-----------E-------PY--NEAALSLIANDHFISFRFQEA 62 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH-----------C-------TT--CHHHHHHHHHHHHHTTCHHHH
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH-----------C-------cC--CHHHHHHHHHHHHHcCCHHHH
Confidence 3445677778877654444 79999999999998 1 11 135788999999999999999
Q ss_pred HHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHH
Q 013867 294 EEILTRTLTKTEELFGSHHPKVGVVLTCLALMF 326 (435)
Q Consensus 294 e~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly 326 (435)
...|+++|+. .|+.|.....-..++...
T Consensus 63 i~~w~~~l~~-----~p~~~~~~~i~~~I~~A~ 90 (93)
T 3bee_A 63 IDTWVLLLDS-----NDPNLDRVTIIESINKAK 90 (93)
T ss_dssp HHHHHHHHTC-----CCTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhh-----CCCCccHHHHHHHHHHHH
Confidence 9999999874 444677777766666543
No 205
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.50 E-value=0.0031 Score=62.10 Aligned_cols=88 Identities=11% Similarity=-0.044 Sum_probs=68.4
Q ss_pred hhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHHHHh
Q 013867 233 TRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHM-----GNFGDAEEILTRTLTKTEEL 307 (435)
Q Consensus 233 ~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~q-----G~y~eAe~l~~rAL~I~e~~ 307 (435)
.+...+|+.+.+||++|- +.. ..-.+...||.+|... |+.++|+.+|+|||+|
T Consensus 176 l~~l~~A~a~lerAleLD--------P~~----------~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L---- 233 (301)
T 3u64_A 176 PDTVHAAVMMLERACDLW--------PSY----------QEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY---- 233 (301)
T ss_dssp HHHHHHHHHHHHHHHHHC--------TTH----------HHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH----
T ss_pred HHhHHHHHHHHHHHHHhC--------CCc----------ccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh----
Confidence 356789999999999991 111 1123567899999985 9999999999999998
Q ss_pred hCCCChhH-HHHHHHHHHHHHH-hhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 308 FGSHHPKV-GVVLTCLALMFRN-KAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 308 lG~~HP~v-a~~L~nLA~ly~~-qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
.|.- ..+....|..|.. +|+++++ +.++++||.+-
T Consensus 234 ----nP~~~id~~v~YA~~l~~~~gd~~~a------~~~L~kAL~a~ 270 (301)
T 3u64_A 234 ----CSAHDPDHHITYADALCIPLNNRAGF------DEALDRALAID 270 (301)
T ss_dssp ----CCTTCSHHHHHHHHHTTTTTTCHHHH------HHHHHHHHHCC
T ss_pred ----CCCCCchHHHHHHHHHHHhcCCHHHH------HHHHHHHHcCC
Confidence 3432 5677888998877 5987766 89999998864
No 206
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.45 E-value=0.0011 Score=65.31 Aligned_cols=66 Identities=12% Similarity=0.110 Sum_probs=52.0
Q ss_pred hhHHHHHHHHHHHHh-----hchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHH-cCCHHH
Q 013867 219 TGSAALSYGEYLHAT-----RNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAH-MGNFGD 292 (435)
Q Consensus 219 ~~~~a~~la~~~~~~-----G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~-qG~y~e 292 (435)
.|.+...+|.+|... |+.++|+.+|+|||+| .-+ + .+ .+...+|..|.. +|++++
T Consensus 198 ~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L---nP~---~-~i------------d~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 198 EGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY---CSA---H-DP------------DHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH---CCT---T-CS------------HHHHHHHHHTTTTTTCHHH
T ss_pred cCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh---CCC---C-Cc------------hHHHHHHHHHHHhcCCHHH
Confidence 356777889888884 9999999999999999 111 0 11 234578888877 599999
Q ss_pred HHHHHHHHHHH
Q 013867 293 AEEILTRTLTK 303 (435)
Q Consensus 293 Ae~l~~rAL~I 303 (435)
|+.++++||++
T Consensus 259 a~~~L~kAL~a 269 (301)
T 3u64_A 259 FDEALDRALAI 269 (301)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHcC
Confidence 99999999985
No 207
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=97.39 E-value=0.029 Score=56.33 Aligned_cols=228 Identities=9% Similarity=-0.049 Sum_probs=135.6
Q ss_pred hhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 013867 79 DESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGN-YVEAIEKLQKVENFKNSILGVRVAAMEALAGLYL 157 (435)
Q Consensus 79 ~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGk-y~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~ 157 (435)
.+...+|+.+++++|.+. |+-.++.+..+.++...|+ ++++++++.+++.+..+.-.+
T Consensus 67 ~e~se~AL~lt~~~L~~n--------P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~a------------- 125 (349)
T 3q7a_A 67 EEKSERALELTEIIVRMN--------PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQV------------- 125 (349)
T ss_dssp TCCSHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHH-------------
T ss_pred CCCCHHHHHHHHHHHHhC--------chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHH-------------
Confidence 456679999999999776 5567889999999999994 999999999986654433221
Q ss_pred hcCCCcchHHHHHHHHHHHHhc-CCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhch
Q 013867 158 QLGQDDTSSVVADKCLQLCEKH-KPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNF 236 (435)
Q Consensus 158 ~~g~~~~A~~~~~~~~~l~~~~-~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y 236 (435)
...+. .++... +. .+. +++....+++ ..+ |....+-...+.++...|++
T Consensus 126 ----------W~hR~-wlL~~l~~~-~~~--~EL~~~~k~L--------~~d--------pkNy~AW~~R~wvl~~l~~~ 175 (349)
T 3q7a_A 126 ----------WHHRL-LLLDRISPQ-DPV--SEIEYIHGSL--------LPD--------PKNYHTWAYLHWLYSHFSTL 175 (349)
T ss_dssp ----------HHHHH-HHHHHHCCS-CCH--HHHHHHHHHT--------SSC--------TTCHHHHHHHHHHHHHHHHT
T ss_pred ----------HHHHH-HHHHHhcCC-ChH--HHHHHHHHHH--------HhC--------CCCHHHHHHHHHHHHHhccc
Confidence 11121 111111 10 121 2232222222 111 22334444455667777888
Q ss_pred H--------HHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCC-------HHHHHHHHHHHH
Q 013867 237 L--------LAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGN-------FGDAEEILTRTL 301 (435)
Q Consensus 237 ~--------eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~-------y~eAe~l~~rAL 301 (435)
+ ++..++.+++++ .+. | -.+.++.+.++...|+ ++++.+++++++
T Consensus 176 ~~~~~~~~~eELe~~~k~I~~-----------dp~--N-------~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI 235 (349)
T 3q7a_A 176 GRISEAQWGSELDWCNEMLRV-----------DGR--N-------NSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSI 235 (349)
T ss_dssp TCCCHHHHHHHHHHHHHHHHH-----------CTT--C-------HHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHH
T ss_pred cccchhhHHHHHHHHHHHHHh-----------CCC--C-------HHHHHHHHHHHHhccccccchHHHHHHHHHHHHHH
Confidence 7 999999999988 111 1 1467899999999998 566666666666
Q ss_pred HHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhh----------hhhhHH-HHHHHHHHHHHhcCCC---CCCCchhhhhc
Q 013867 302 TKTEELFGSHHPKVGVVLTCLALMFRNKAMQEH----------SSALLI-QEGLYRRALEFLKAPP---LESEGVETKVD 367 (435)
Q Consensus 302 ~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~----------A~~~~~-Ae~Ly~rAL~I~k~~~---~~hp~~a~~l~ 367 (435)
.+ +|+=-++.+++..++..-|+... ++.... -..+-.-|++.....+ .+.+ ..-.+.
T Consensus 236 ~~--------~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~~al~ 306 (349)
T 3q7a_A 236 HL--------IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLP-VPLALE 306 (349)
T ss_dssp HH--------CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSC-CHHHHH
T ss_pred Hh--------CCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCC-cHHHHH
Confidence 55 78888899999999998876410 000000 0122333333332111 1112 222455
Q ss_pred cHHHHHHHhcCHHHHhhHh
Q 013867 368 RTDIVALARGGYAEALSVQ 386 (435)
Q Consensus 368 nla~~~~a~G~yaeal~~~ 386 (435)
-++-+|..+|+.++|+...
T Consensus 307 ~l~d~~~~~~~~~~a~~~~ 325 (349)
T 3q7a_A 307 YLADSFIEQNRVDDAAKVF 325 (349)
T ss_dssp HHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHH
Confidence 6777888888888887766
No 208
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=97.36 E-value=0.035 Score=56.68 Aligned_cols=95 Identities=14% Similarity=0.135 Sum_probs=71.7
Q ss_pred HHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 013867 225 SYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKT 304 (435)
Q Consensus 225 ~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~ 304 (435)
.++.+|..+|+|.+|..++.+.+.-..+ .+. + . ..+.....-.++|..+|++.++..+|++|..+.
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~----~dd---~------~-~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~ 169 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKK----LDD---K------N-LLVEVQLLESKTYHALSNLPKARAALTSARTTA 169 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTT----SSC---T------H-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhc----ccc---c------h-hHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhh
Confidence 5788999999999999999999987532 111 1 0 123344466889999999999999999999998
Q ss_pred HHhhCCCChhHHHHHHHH-HHHHH-Hhhhhhhh
Q 013867 305 EELFGSHHPKVGVVLTCL-ALMFR-NKAMQEHS 335 (435)
Q Consensus 305 e~~lG~~HP~va~~L~nL-A~ly~-~qG~~e~A 335 (435)
...+ .||.+-..+... |.++. .+++|.+|
T Consensus 170 ~ai~--~~p~i~a~i~~~~Gi~~l~~~rdyk~A 200 (394)
T 3txn_A 170 NAIY--CPPKVQGALDLQSGILHAADERDFKTA 200 (394)
T ss_dssp HHSC--CCHHHHHHHHHHHHHHHHHTTSCHHHH
T ss_pred ccCC--CCHHHHHHHHHHhhHHHHHhccCHHHH
Confidence 8764 899865555544 55555 69998877
No 209
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.31 E-value=0.019 Score=57.14 Aligned_cols=172 Identities=8% Similarity=-0.018 Sum_probs=103.4
Q ss_pred hhcHH-HHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhhhhhHHHHHH
Q 013867 79 DESYS-QGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGN----------YVEAIEKLQKVENFKNSILGVRVA 147 (435)
Q Consensus 79 ~G~Y~-eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGk----------y~eA~~l~~ral~i~e~~L~i~va 147 (435)
.|.|+ +|+.+++++|.+. |+..++.+..+.++...|+ |++++.++.+++.+..+.-
T Consensus 42 ~~e~s~eaL~~t~~~L~~n--------P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny----- 108 (331)
T 3dss_A 42 AGELDESVLELTSQILGAN--------PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSY----- 108 (331)
T ss_dssp TTCCSHHHHHHHHHHHTTC--------TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCH-----
T ss_pred cCCCCHHHHHHHHHHHHHC--------chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCH-----
Confidence 35665 8999999999655 5667888888888887776 4566665555543332221
Q ss_pred HHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHH
Q 013867 148 AMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYG 227 (435)
Q Consensus 148 ale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la 227 (435)
.....+. .++..-+...+. +++....+++.. +|....+-+..+
T Consensus 109 ------------------~aW~hR~-wlL~~l~~~~~~--~EL~~~~k~l~~----------------dprNy~AW~~R~ 151 (331)
T 3dss_A 109 ------------------GTWHHRC-WLLSRLPEPNWA--RELELCARFLEA----------------DERNFHCWDYRR 151 (331)
T ss_dssp ------------------HHHHHHH-HHHHHCSSCCHH--HHHHHHHHHHHH----------------CTTCHHHHHHHH
T ss_pred ------------------HHHHHHH-HHHhccCcccHH--HHHHHHHHHHHh----------------CCCCHHHHHHHH
Confidence 1122222 222222211122 334444444331 133334555556
Q ss_pred HHHHHhhc-hHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHc--------------CCHHH
Q 013867 228 EYLHATRN-FLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHM--------------GNFGD 292 (435)
Q Consensus 228 ~~~~~~G~-y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~q--------------G~y~e 292 (435)
.++...|+ ++++..++.+++++ .+. | ..+.++.+.++... +.|++
T Consensus 152 ~vl~~l~~~~~eel~~~~~~I~~-----------~p~--N-------~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~e 211 (331)
T 3dss_A 152 FVAAQAAVAPAEELAFTDSLITR-----------NFS--N-------YSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLK 211 (331)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHH-----------CSC--C-------HHHHHHHHHHHHHHSCCC------CCCHHHHHH
T ss_pred HHHHHhCcCHHHHHHHHHHHHHH-----------CCC--C-------HHHHHHHHHHHHHhhhccccccccccchHHHHH
Confidence 67778888 59999999999988 111 1 14678888888887 56788
Q ss_pred HHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHH
Q 013867 293 AEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRN 328 (435)
Q Consensus 293 Ae~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~ 328 (435)
+.+++.+++.+ +|+=.++.+.+..++..
T Consensus 212 Ele~~~~ai~~--------~P~d~SaW~Y~r~ll~~ 239 (331)
T 3dss_A 212 ELELVQNAFFT--------DPNDQSAWFYHRWLLGA 239 (331)
T ss_dssp HHHHHHHHHHH--------STTCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHh--------CCCCHHHHHHHHHHHHh
Confidence 88888888875 45555566544444433
No 210
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.22 E-value=0.0011 Score=60.06 Aligned_cols=97 Identities=12% Similarity=-0.007 Sum_probs=69.9
Q ss_pred HHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 013867 228 EYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEEL 307 (435)
Q Consensus 228 ~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~ 307 (435)
.-+...|.|+-|+.++..++.+... ++.+.+ | +....++..+|.++..+|+|.+|+..|++||..++.+
T Consensus 28 k~L~d~~LY~sA~~La~lLlSl~~~------~~~~~s----p-~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l 96 (167)
T 3ffl_A 28 RDMAAAGLHSNVRLLSSLLLTLSNN------NPELFS----P-PQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKAL 96 (167)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHH------STTSSC----H-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHhhhHHHHHHHHHHHHHhhcC------Cccccc----H-HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHH
Confidence 3456889999999999999999432 122220 2 2345678999999999999999999999999999854
Q ss_pred hCCCC-----------------hhHHHHHHHHHHHHHHhhhhhhh
Q 013867 308 FGSHH-----------------PKVGVVLTCLALMFRNKAMQEHS 335 (435)
Q Consensus 308 lG~~H-----------------P~va~~L~nLA~ly~~qG~~e~A 335 (435)
.-..- +.-...-..+|..|...+++++|
T Consensus 97 ~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~A 141 (167)
T 3ffl_A 97 SKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDA 141 (167)
T ss_dssp --------------------CCCCHHHHHHHHHHHHHHTTCHHHH
T ss_pred hcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHH
Confidence 31111 11235667799999999885544
No 211
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.21 E-value=0.00068 Score=54.87 Aligned_cols=71 Identities=17% Similarity=0.119 Sum_probs=54.6
Q ss_pred hHHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 013867 59 NPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFK 138 (435)
Q Consensus 59 ~~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~ 138 (435)
|+.+..+..||..+... .+....++|+.+++++|.+. |.-...+..||..++.+|+|++|+..|+++++..
T Consensus 3 p~~~~~~~~~a~al~~~-~~~~~~~~A~~~l~~AL~~d--------p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYL-HKQAMTDEVSLLLEQALQLE--------PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHT-TTTCCCHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHHC--------cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 34455667777777422 12334789999999999765 5667888889999999999999999999986543
No 212
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=97.12 E-value=0.03 Score=60.89 Aligned_cols=206 Identities=9% Similarity=0.045 Sum_probs=121.2
Q ss_pred cHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhhhhhHHHHHHHHHHHHHHHHhc
Q 013867 81 SYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAI-EKLQKVENFKNSILGVRVAAMEALAGLYLQL 159 (435)
Q Consensus 81 ~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~-~l~~ral~i~e~~L~i~vaale~L~g~~~~~ 159 (435)
..++...+|++||... |.........+..+..+|+.++|. ..|++++........+.. ..+.++...
T Consensus 324 ~~~Rv~~~Ye~aL~~~--------p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl----~~a~~ee~~ 391 (679)
T 4e6h_A 324 HKARMTYVYMQAAQHV--------CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAF----SLSEQYELN 391 (679)
T ss_dssp HHHHHHHHHHHHHHHT--------TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHH----HHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHc--------CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHH----HHHHHHHHh
Confidence 3567788999999764 456677777888999999999997 999999665443322111 111122223
Q ss_pred CCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccc---cccccchhHHHHHHHHHHHHhhch
Q 013867 160 GQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGL---QEEEGCTGSAALSYGEYLHATRNF 236 (435)
Q Consensus 160 g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~---~~~~~~~~~~a~~la~~~~~~G~y 236 (435)
|..+.|..+++.++..+.. .+..+....|... ..-......+-..++.+...+|+.
T Consensus 392 ~~~e~aR~iyek~l~~l~~---------------------~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l 450 (679)
T 4e6h_A 392 TKIPEIETTILSCIDRIHL---------------------DLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGL 450 (679)
T ss_dssp TCHHHHHHHHHHHHHHHHH---------------------HHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred CCHHHHHHHHHHHHHHHHH---------------------HhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCH
Confidence 3333333333333322110 0000000001000 000011223456677788889999
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhhCCCChhH
Q 013867 237 LLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMG-NFGDAEEILTRTLTKTEELFGSHHPKV 315 (435)
Q Consensus 237 ~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG-~y~eAe~l~~rAL~I~e~~lG~~HP~v 315 (435)
+.|..+|.+|++. .. ... .+ .....|.+....| ++++|..+|+++|..+ + +.|.
T Consensus 451 ~~AR~vf~~A~~~----~~-----~~~------~~----lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~----p-~~~~- 505 (679)
T 4e6h_A 451 AASRKIFGKCRRL----KK-----LVT------PD----IYLENAYIEYHISKDTKTACKVLELGLKYF----A-TDGE- 505 (679)
T ss_dssp HHHHHHHHHHHHT----GG-----GSC------TH----HHHHHHHHHHTTTSCCHHHHHHHHHHHHHH----T-TCHH-
T ss_pred HHHHHHHHHHHHh----cC-----CCC------hH----HHHHHHHHHHHhCCCHHHHHHHHHHHHHHC----C-CchH-
Confidence 9999999999865 11 100 11 1234566666655 5999999999999863 2 3344
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 316 GVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 316 a~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
.....+.+....|+.+.| ..+|+||+...
T Consensus 506 --~w~~y~~fe~~~~~~~~A------R~lferal~~~ 534 (679)
T 4e6h_A 506 --YINKYLDFLIYVNEESQV------KSLFESSIDKI 534 (679)
T ss_dssp --HHHHHHHHHHHHTCHHHH------HHHHHHHTTTS
T ss_pred --HHHHHHHHHHhCCCHHHH------HHHHHHHHHhc
Confidence 345666777888887766 89999998765
No 213
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=96.92 E-value=0.047 Score=57.00 Aligned_cols=98 Identities=10% Similarity=-0.017 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013867 222 AALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTL 301 (435)
Q Consensus 222 ~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL 301 (435)
+.+.+-..|...|++++|..+|++...- | +. |+ +.+++.|=..|...|++++|..+|.+-.
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~-----g------~~-----Pd---~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAF-----G------IQ-----PR---LRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHT-----T------CC-----CC---HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C------CC-----Cc---cceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4455666788999999999999876432 2 11 32 2456677778999999999999998865
Q ss_pred HHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHH
Q 013867 302 TKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEF 351 (435)
Q Consensus 302 ~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I 351 (435)
.- | -.|+ ..+++.|-..|...|+.++| +.++++.-+.
T Consensus 168 ~~-----G-~~Pd-~~ty~~Li~~~~~~g~~d~A------~~ll~~Mr~~ 204 (501)
T 4g26_A 168 ES-----E-VVPE-EPELAALLKVSMDTKNADKV------YKTLQRLRDL 204 (501)
T ss_dssp HT-----T-CCCC-HHHHHHHHHHHHHTTCHHHH------HHHHHHHHHH
T ss_pred hc-----C-CCCC-HHHHHHHHHHHhhCCCHHHH------HHHHHHHHHh
Confidence 32 2 2343 46799999999999998877 6777765443
No 214
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=96.61 E-value=0.13 Score=55.95 Aligned_cols=206 Identities=7% Similarity=-0.035 Sum_probs=121.8
Q ss_pred ChhcHHHHH-HHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 013867 78 SDESYSQGM-LVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLY 156 (435)
Q Consensus 78 s~G~Y~eA~-~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~ 156 (435)
..|+.++|. .+|++|+... |.........+.++...|++++|..+|+++++....... .+..
T Consensus 355 ~~~~~~~a~r~il~rAi~~~--------P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~----~~~~----- 417 (679)
T 4e6h_A 355 EKNTDSTVITKYLKLGQQCI--------PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLA----ALME----- 417 (679)
T ss_dssp HHSCCTTHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH----HHHH-----
T ss_pred hcCcHHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhh----hhhh-----
Confidence 356678997 9999998654 333455678999999999999999999999764321110 0000
Q ss_pred HhcCCCc---------chHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHH
Q 013867 157 LQLGQDD---------TSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYG 227 (435)
Q Consensus 157 ~~~g~~~---------~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la 227 (435)
.-|.. .-..+.-..+.+....+. .+.|..++.++ +.. . + ++...+....|
T Consensus 418 --~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~--l~~AR~vf~~A--~~~----~----~-------~~~~~lyi~~A 476 (679)
T 4e6h_A 418 --DDPTNESAINQLKSKLTYVYCVYMNTMKRIQG--LAASRKIFGKC--RRL----K----K-------LVTPDIYLENA 476 (679)
T ss_dssp --HSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC--HHHHHHHHHHH--HHT----G----G-------GSCTHHHHHHH
T ss_pred --ccCcchhhhhhhccchHHHHHHHHHHHHHcCC--HHHHHHHHHHH--HHh----c----C-------CCChHHHHHHH
Confidence 00100 000011122222222111 22233333222 210 0 1 22233444455
Q ss_pred HHHHH-hhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 013867 228 EYLHA-TRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEE 306 (435)
Q Consensus 228 ~~~~~-~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~ 306 (435)
.+-.. .++++.|..+|+++|+.+ . +. + .-+...+.+...+|+.+.|..+|+||+...-
T Consensus 477 ~lE~~~~~d~e~Ar~ife~~Lk~~---p---~~---------~-----~~w~~y~~fe~~~~~~~~AR~lferal~~~~- 535 (679)
T 4e6h_A 477 YIEYHISKDTKTACKVLELGLKYF---A---TD---------G-----EYINKYLDFLIYVNEESQVKSLFESSIDKIS- 535 (679)
T ss_dssp HHHHTTTSCCHHHHHHHHHHHHHH---T---TC---------H-----HHHHHHHHHHHHHTCHHHHHHHHHHHTTTSS-
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHC---C---Cc---------h-----HHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC-
Confidence 55444 456999999999999873 1 11 1 1235667778889999999999999986422
Q ss_pred hhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 307 LFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 307 ~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
+-.+.......+...-...|..+.+ ..+++|+++..
T Consensus 536 ----~~~~~~~lw~~~~~fE~~~G~~~~~------~~v~~R~~~~~ 571 (679)
T 4e6h_A 536 ----DSHLLKMIFQKVIFFESKVGSLNSV------RTLEKRFFEKF 571 (679)
T ss_dssp ----STTHHHHHHHHHHHHHHHTCCSHHH------HHHHHHHHHHS
T ss_pred ----CHHHHHHHHHHHHHHHHHcCCHHHH------HHHHHHHHHhC
Confidence 1124556666777777778886655 88999998877
No 215
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=96.61 E-value=0.026 Score=59.85 Aligned_cols=119 Identities=8% Similarity=-0.053 Sum_probs=87.7
Q ss_pred cchhHHHHHHHHHHHHhhc----------hHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHH
Q 013867 217 GCTGSAALSYGEYLHATRN----------FLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAH 286 (435)
Q Consensus 217 ~~~~~~a~~la~~~~~~G~----------y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~ 286 (435)
|....+-+..+.++...|+ |++|..+|.+++.+- +.. -.+.++-+.++..
T Consensus 60 P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~--------pK~------------y~aW~hR~w~l~~ 119 (567)
T 1dce_A 60 PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--------PKS------------YGTWHHRCWLLSR 119 (567)
T ss_dssp TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC--------TTC------------HHHHHHHHHHHHT
T ss_pred chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC--------CCC------------HHHHHHHHHHHHH
Confidence 3444555666667777777 999999999999881 111 1457788999999
Q ss_pred cC--CHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhh-hhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchh
Q 013867 287 MG--NFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKA-MQEHSSALLIQEGLYRRALEFLKAPPLESEGVE 363 (435)
Q Consensus 287 qG--~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG-~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a 363 (435)
.| +|++|.+++.+++++ +|+-..+.++.+.++...| +++++ ...+.+++++ +|+-.
T Consensus 120 l~~~~~~~el~~~~k~l~~--------d~~N~~aW~~R~~~l~~l~~~~~~e------l~~~~~~I~~-------~p~n~ 178 (567)
T 1dce_A 120 LPEPNWARELELCARFLEA--------DERNFHCWDYRRFVAAQAAVAPAEE------LAFTDSLITR-------NFSNY 178 (567)
T ss_dssp CSSCCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTCCCHHHH------HHHHHTTTTT-------TCCCH
T ss_pred cccccHHHHHHHHHHHHhh--------ccccccHHHHHHHHHHHcCCChHHH------HHHHHHHHHH-------CCCCc
Confidence 99 679999999999996 6888899999999999988 55443 4555555433 34445
Q ss_pred hhhccHHHHHHHh
Q 013867 364 TKVDRTDIVALAR 376 (435)
Q Consensus 364 ~~l~nla~~~~a~ 376 (435)
...++++.++...
T Consensus 179 saW~~r~~ll~~l 191 (567)
T 1dce_A 179 SSWHYRSCLLPQL 191 (567)
T ss_dssp HHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhh
Confidence 5777888887764
No 216
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.59 E-value=0.049 Score=55.17 Aligned_cols=66 Identities=9% Similarity=-0.032 Sum_probs=52.5
Q ss_pred cchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 013867 217 GCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEI 296 (435)
Q Consensus 217 ~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l 296 (435)
+..+.+...++..+..+|++++|+..++||+++ . + . ..++.-+|.++...|++++|.+.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L---n-----~-s------------~~a~~llG~~~~~~G~~~eA~e~ 332 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDL---E-----M-S------------WLNYVLLGKVYEMKGMNREAADA 332 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---C-----C-C------------HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc---C-----C-C------------HHHHHHHHHHHHHCCCHHHHHHH
Confidence 334455555666677789999999999999999 1 1 1 12456789999999999999999
Q ss_pred HHHHHHH
Q 013867 297 LTRTLTK 303 (435)
Q Consensus 297 ~~rAL~I 303 (435)
|.+|+.+
T Consensus 333 ~~~AlrL 339 (372)
T 3ly7_A 333 YLTAFNL 339 (372)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 9999987
No 217
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.52 E-value=0.007 Score=53.96 Aligned_cols=73 Identities=15% Similarity=0.207 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcc-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 013867 60 PVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAES-WRGISLLAMSTLLYESGNYVEAIEKLQKVENFK 138 (435)
Q Consensus 60 ~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp-~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~ 138 (435)
......-+||+++.++. +.+.+++++.+++..+... .| .....+++||..|++.|+|++|..++++++++.
T Consensus 30 ~~~~~~F~ya~~Lv~S~-~~~~~~~gI~lLe~ll~~~-------~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ie 101 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSK-YNDDIRKGIVLLEELLPKG-------SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTE 101 (152)
T ss_dssp CCHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHS-------CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhcC-------CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 35577889999998754 6678999999999999743 34 568899999999999999999999999997765
Q ss_pred hh
Q 013867 139 NS 140 (435)
Q Consensus 139 e~ 140 (435)
+.
T Consensus 102 P~ 103 (152)
T 1pc2_A 102 PQ 103 (152)
T ss_dssp TT
T ss_pred CC
Confidence 43
No 218
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.98 E-value=0.028 Score=50.00 Aligned_cols=86 Identities=14% Similarity=0.041 Sum_probs=66.5
Q ss_pred hchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHhhCC
Q 013867 234 RNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMG---NFGDAEEILTRTLTKTEELFGS 310 (435)
Q Consensus 234 G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG---~y~eAe~l~~rAL~I~e~~lG~ 310 (435)
+....++.-|++.++. + + . +..+.+++|..+.+.. +++++..+++..+..
T Consensus 12 ~~l~~~~~~y~~e~~~-----~---~--~----------~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~------- 64 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKAA-----G---S--V----------SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK------- 64 (152)
T ss_dssp HHHHHHHHHHHHHHHT-----T---C--C----------CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHcc-----C---C--C----------cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-------
Confidence 4456677777777643 1 1 1 2357789999999988 667888888887764
Q ss_pred CCh-hHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 311 HHP-KVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 311 ~HP-~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
+.| +-...+.+||..|.+.|+|++| ..+++++|+|-
T Consensus 65 ~~p~~~rd~lY~LAv~~~kl~~Y~~A------~~y~~~lL~ie 101 (152)
T 1pc2_A 65 GSKEEQRDYVFYLAVGNYRLKEYEKA------LKYVRGLLQTE 101 (152)
T ss_dssp SCHHHHHHHHHHHHHHHHHTSCHHHH------HHHHHHHHHHC
T ss_pred CCccchHHHHHHHHHHHHHccCHHHH------HHHHHHHHhcC
Confidence 367 6789999999999999998877 78899999986
No 219
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=95.96 E-value=0.085 Score=55.00 Aligned_cols=155 Identities=8% Similarity=-0.071 Sum_probs=91.5
Q ss_pred hhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHhhhhhHHHHHHHH
Q 013867 79 DESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGN---------YVEAIEKLQKVENFKNSILGVRVAAM 149 (435)
Q Consensus 79 ~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGk---------y~eA~~l~~ral~i~e~~L~i~vaal 149 (435)
.|+.++|+.+|++..+.. + .|+ ..+++.|=.++...|+ .++|.++|++-.. + |+
T Consensus 39 ~G~~~~A~~lf~~M~~~G---v---~pd-~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~---~--G~----- 101 (501)
T 4g26_A 39 KGDVLEALRLYDEARRNG---V---QLS-QYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIV---D--KV----- 101 (501)
T ss_dssp SCCHHHHHHHHHHHHHHT---C---CCC-HHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHH---T--TC-----
T ss_pred CCCHHHHHHHHHHHHHcC---C---CCC-HhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHH---h--CC-----
Confidence 589999999999987532 2 133 3457777667765544 6778777775321 1 11
Q ss_pred HHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHH
Q 013867 150 EALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEY 229 (435)
Q Consensus 150 e~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~ 229 (435)
-|+. ..++.++..+.+.+. .++|..++..-+ .. |-. |+ ..+.+.+-..
T Consensus 102 ----------~Pd~---~tyn~lI~~~~~~g~--~~~A~~l~~~M~-------~~-g~~--------Pd-~~tyn~lI~~ 149 (501)
T 4g26_A 102 ----------VPNE---ATFTNGARLAVAKDD--PEMAFDMVKQMK-------AF-GIQ--------PR-LRSYGPALFG 149 (501)
T ss_dssp ----------CCCH---HHHHHHHHHHHHHTC--HHHHHHHHHHHH-------HT-TCC--------CC-HHHHHHHHHH
T ss_pred ----------CCCH---HHHHHHHHHHHhcCC--HHHHHHHHHHHH-------Hc-CCC--------Cc-cceehHHHHH
Confidence 2221 233444444444442 333333221111 11 211 21 1233445556
Q ss_pred HHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013867 230 LHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTL 301 (435)
Q Consensus 230 ~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL 301 (435)
|...|+.++|..+|++..+- | +. |+. .+++.|=..|.+.|++++|+.+|++--
T Consensus 150 ~~~~g~~~~A~~l~~~M~~~-----G------~~-----Pd~---~ty~~Li~~~~~~g~~d~A~~ll~~Mr 202 (501)
T 4g26_A 150 FCRKGDADKAYEVDAHMVES-----E------VV-----PEE---PELAALLKVSMDTKNADKVYKTLQRLR 202 (501)
T ss_dssp HHHTTCHHHHHHHHHHHHHT-----T------CC-----CCH---HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHhc-----C------CC-----CCH---HHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 78999999999999886532 2 11 332 356777788999999999999999853
No 220
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=95.85 E-value=0.15 Score=46.06 Aligned_cols=104 Identities=13% Similarity=-0.044 Sum_probs=74.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChh-HHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCC
Q 013867 277 TFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPK-VGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAP 355 (435)
Q Consensus 277 l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~-va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~ 355 (435)
+..-..-+.+.|.|+.|+.+..-++.+.+.--..--|. -+.++..+|.++..+|.|.+| +..|++||.+.+..
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA------~~~y~qALq~~k~l 96 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNA------VSKYTMALQQKKAL 96 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHH------HHHHHHHHHHHHHH
Confidence 44445667789999999999999999976422222333 378999999999999997666 89999999999853
Q ss_pred CCCC------------C---c---hhhhhccHHHHHHHhcCHHHHhhHh
Q 013867 356 PLES------------E---G---VETKVDRTDIVALARGGYAEALSVQ 386 (435)
Q Consensus 356 ~~~h------------p---~---~a~~l~nla~~~~a~G~yaeal~~~ 386 (435)
.-.. | + -...-..++.++...|++.+|+..-
T Consensus 97 ~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~L 145 (167)
T 3ffl_A 97 SKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAIL 145 (167)
T ss_dssp --------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 1110 0 0 0112235788888999999988865
No 221
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=95.83 E-value=0.16 Score=51.35 Aligned_cols=62 Identities=10% Similarity=0.073 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 276 ATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 276 ~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
++.-+|.++..+|++++|...++||+.+. |+ +..+.-+|.+|.-.|++++| ...|.+|+.+.
T Consensus 279 ~~~alal~~l~~gd~d~A~~~l~rAl~Ln--------~s-~~a~~llG~~~~~~G~~~eA------~e~~~~AlrL~ 340 (372)
T 3ly7_A 279 IYQIKAVSALVKGKTDESYQAINTGIDLE--------MS-WLNYVLLGKVYEMKGMNREA------ADAYLTAFNLR 340 (372)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------CC-HHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhcC--------CC-HHHHHHHHHHHHHCCCHHHH------HHHHHHHHhcC
Confidence 45567777888899999999999999993 44 56778999999999998877 89999999885
No 222
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=95.81 E-value=0.12 Score=51.90 Aligned_cols=123 Identities=7% Similarity=-0.123 Sum_probs=73.1
Q ss_pred cchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcC-CHHHHHH
Q 013867 217 GCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMG-NFGDAEE 295 (435)
Q Consensus 217 ~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG-~y~eAe~ 295 (435)
+..-.+...+..++.+.+..++|..++.++|.+ . |++. .+.+.-+.++...| .++++..
T Consensus 51 ~~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~-----------n-------P~~y--taWn~R~~iL~~l~~~l~eEL~ 110 (349)
T 3q7a_A 51 EEYKDAMDYFRAIAAKEEKSERALELTEIIVRM-----------N-------PAHY--TVWQYRFSLLTSLNKSLEDELR 110 (349)
T ss_dssp HHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHH-----------C-------TTCH--HHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-----------C-------chhH--HHHHHHHHHHHHhhhhHHHHHH
Confidence 444445555555666666667788888877777 0 1111 34566777777777 3777777
Q ss_pred HHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHh-h-hhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHH
Q 013867 296 ILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNK-A-MQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVA 373 (435)
Q Consensus 296 l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~q-G-~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~ 373 (435)
++.++|. .+|+.-.+.++.+.++... + +++++ ..++.++|++- |.-...-+++..+.
T Consensus 111 ~~~~~L~--------~nPKny~aW~hR~wlL~~l~~~~~~~E------L~~~~k~L~~d-------pkNy~AW~~R~wvl 169 (349)
T 3q7a_A 111 LMNEFAV--------QNLKSYQVWHHRLLLLDRISPQDPVSE------IEYIHGSLLPD-------PKNYHTWAYLHWLY 169 (349)
T ss_dssp HHHHHHH--------TTCCCHHHHHHHHHHHHHHCCSCCHHH------HHHHHHHTSSC-------TTCHHHHHHHHHHH
T ss_pred HHHHHHH--------hCCCcHHHHHHHHHHHHHhcCCChHHH------HHHHHHHHHhC-------CCCHHHHHHHHHHH
Confidence 7777763 5677777777777777766 5 44333 55555555432 22233444555555
Q ss_pred HHhcCHH
Q 013867 374 LARGGYA 380 (435)
Q Consensus 374 ~a~G~ya 380 (435)
...|+|.
T Consensus 170 ~~l~~~~ 176 (349)
T 3q7a_A 170 SHFSTLG 176 (349)
T ss_dssp HHHHHTT
T ss_pred HHhcccc
Confidence 5555554
No 223
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=95.79 E-value=0.88 Score=45.08 Aligned_cols=52 Identities=13% Similarity=0.068 Sum_probs=42.9
Q ss_pred cHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhhhh
Q 013867 81 SYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGN--YVEAIEKLQKVENFKNS 140 (435)
Q Consensus 81 ~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGk--y~eA~~l~~ral~i~e~ 140 (435)
.|++++.+++++|.+ +|.--.+.+..+.++...|+ |+++++++.+++++..+
T Consensus 89 ~l~~EL~~~~~~L~~--------~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr 142 (331)
T 3dss_A 89 LVKAELGFLESCLRV--------NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER 142 (331)
T ss_dssp HHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC
Confidence 388999999999964 46677888899999999995 99999999998765543
No 224
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=95.66 E-value=0.9 Score=46.94 Aligned_cols=52 Identities=12% Similarity=0.047 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhH
Q 013867 82 YSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSIL 142 (435)
Q Consensus 82 Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L 142 (435)
.++...+|++||... |.........+..+.++|+.++|...|++++.. +...
T Consensus 195 ~~Rv~~~ye~al~~~--------p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~ 246 (493)
T 2uy1_A 195 ESRMHFIHNYILDSF--------YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGM 246 (493)
T ss_dssp HHHHHHHHHHHHHHT--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSS
T ss_pred HHHHHHHHHHHHHcC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcH
Confidence 556788999999654 233566667788899999999999999999887 6553
No 225
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.44 E-value=0.1 Score=55.58 Aligned_cols=118 Identities=18% Similarity=0.112 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHH-----HHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHH
Q 013867 276 ATFALGQLEAHMGNFGDAEEILTRTLTKT-----EELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALE 350 (435)
Q Consensus 276 ~l~nLa~ly~~qG~y~eAe~l~~rAL~I~-----e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~ 350 (435)
...+||..+..+|+++.|+.+|.++-... ....| .+ .-+..++.+...+|+++.| +.+|.+.
T Consensus 683 ~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~--~~---~~~~~~~~~a~~~~~~~~A------~~~~~~~-- 749 (814)
T 3mkq_A 683 KWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFN--NK---EGLVTLAKDAETTGKFNLA------FNAYWIA-- 749 (814)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTT--CH---HHHHHHHHHHHHTTCHHHH------HHHHHHH--
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcC--CH---HHHHHHHHHHHHcCchHHH------HHHHHHc--
Confidence 45789999999999999999999962221 11122 22 2244556666666665544 3333221
Q ss_pred HhcCCCCCCCchhhhhccHHHHHHHhcCHHHHhhHhhhhh-hH---HHHHHHHHHHHhcccchhHHHHhcccC
Q 013867 351 FLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQQNRK-DE---GERMKRWAEAAWRNRRVSLAEALNFSE 419 (435)
Q Consensus 351 I~k~~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~~~r~-~e---ae~~~~~a~~~~~~~r~~l~~~l~~~~ 419 (435)
+.++- .--+|...++|++|..+-.... .+ .+-+.+|+..+=..++...+++|..-|
T Consensus 750 -------g~~~~------a~~~~~~~~~~~~A~~lA~~~~~~~~~i~~~~~~~~~~L~~~~~~~~a~~l~~~~ 809 (814)
T 3mkq_A 750 -------GDIQG------AKDLLIKSQRFSEAAFLGSTYGLGDNEVNDIVTKWKENLILNGKNTVSERVCGAE 809 (814)
T ss_dssp -------TCHHH------HHHHHHHTTCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTCHHHHTTBCCGG
T ss_pred -------CCHHH------HHHHHHHcCChHHHHHHHHHhCCChHHHHHHHHHHHHHHHhccchhHHHhhCCcc
Confidence 11111 1123456678888877754332 22 355667998888888878888887443
No 226
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.44 E-value=5 Score=40.96 Aligned_cols=218 Identities=12% Similarity=0.017 Sum_probs=126.3
Q ss_pred hhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Q 013867 79 DESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQ 158 (435)
Q Consensus 79 ~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~ 158 (435)
.|++++|++-|..--+. ...+.+-+++-..+..+-.++.+.|+|+...+.+.--...+
T Consensus 29 ~~~~~~a~e~ll~lEK~--~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr-------------------- 86 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKK--TRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKH-------------------- 86 (445)
T ss_dssp HHHHHHHHHHHHHHHHH--HSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTT--------------------
T ss_pred cCCHHHHHHHHHHHHHH--hhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHh--------------------
Confidence 46888888765322111 13568889999999999999999999998877554221110
Q ss_pred cCCCcch-HHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchH
Q 013867 159 LGQDDTS-SVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFL 237 (435)
Q Consensus 159 ~g~~~~A-~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~ 237 (435)
|+.-.+ ..+.+.+...+..... .+......-+ +++..- .+..-..+..-..+-..++.+|..+|+|.
T Consensus 87 -~qlk~ai~~~V~~~~~~l~~~~~------~d~~~~~~~i----~~l~~v-te~kiflE~erarl~~~La~i~e~~g~~~ 154 (445)
T 4b4t_P 87 -GQLKLSIQYMIQKVMEYLKSSKS------LDLNTRISVI----ETIRVV-TENKIFVEVERARVTKDLVEIKKEEGKID 154 (445)
T ss_dssp -TTSHHHHHHHHHHHHHHHHHHCT------THHHHHHHHH----HCCSSS-SSCCCCCCHHHHHHHHHHHHHHHHHTCHH
T ss_pred -hhhHHHHHHHHHHHHHHHhcCCc------hhHHHHHHHH----HHHHHH-hccchHHHHHHHHHHHHHHHHHHHccCHH
Confidence 111110 1112233333221110 0111111111 112110 00000111112234456789999999999
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhH-H
Q 013867 238 LAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKV-G 316 (435)
Q Consensus 238 eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~v-a 316 (435)
+|..+.+....- +.+ . | ....-+....-...+|...++|.+|..+++++....-. .+.||+. +
T Consensus 155 eA~~iL~~l~~E---t~~-----~-----~-~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~--~~~~~~lk~ 218 (445)
T 4b4t_P 155 EAADILCELQVE---TYG-----S-----M-EMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFK--NPKYESLKL 218 (445)
T ss_dssp HHHHHHHHHHHH---HCS-----S-----S-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH--SSCCHHHHH
T ss_pred HHHHHHHHHHHH---HHh-----c-----c-cHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcc--cCCcHHHHH
Confidence 999998887633 443 1 1 11122344556788999999999999999998654333 3567774 6
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 317 VVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 317 ~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
..+..+|.++...++|.+| -..|..+.+..
T Consensus 219 ~~~~~~~~~~~~e~~y~~a------~~~y~e~~~~~ 248 (445)
T 4b4t_P 219 EYYNLLVKISLHKREYLEV------AQYLQEIYQTD 248 (445)
T ss_dssp HHHHHHHHHHHHHCCHHHH------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHH------HHHHHHHHhcc
Confidence 7788999999999998776 34455554443
No 227
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=93.87 E-value=0.85 Score=47.14 Aligned_cols=37 Identities=11% Similarity=0.032 Sum_probs=26.0
Q ss_pred CChhc-HHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013867 77 KSDES-YSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVEN 136 (435)
Q Consensus 77 ~s~G~-Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~ 136 (435)
+.+|. .+.|-.+|+++++.... |+++.++.+|++++.
T Consensus 5 ~~~~~~i~~aR~vyer~l~~~P~-----------------------~~~e~~~~iferal~ 42 (493)
T 2uy1_A 5 EKMGVELSSPSAIMEHARRLYMS-----------------------KDYRSLESLFGRCLK 42 (493)
T ss_dssp -------CCHHHHHHHHHHHHHT-----------------------TCHHHHHHHHHHHST
T ss_pred HHcCcchHHHHHHHHHHHHHCCC-----------------------CCHHHHHHHHHHHhc
Confidence 45674 88899999999877632 889999999999855
No 228
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=92.54 E-value=0.58 Score=47.61 Aligned_cols=100 Identities=13% Similarity=0.055 Sum_probs=78.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCC
Q 013867 278 FALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPL 357 (435)
Q Consensus 278 ~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~ 357 (435)
..||.+|..+|+|.+|.+++.+.+.-..+. ++-.....++-.-..+|..++++.++ ..+|.+|..+.-+. +
T Consensus 103 ~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~--dd~~~llev~lle~~~~~~~~n~~k~------k~~l~~a~~~~~ai-~ 173 (394)
T 3txn_A 103 ARLIALYFDTALYTEALALGAQLLRELKKL--DDKNLLVEVQLLESKTYHALSNLPKA------RAALTSARTTANAI-Y 173 (394)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTS--SCTHHHHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHHHHS-C
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHHHhccHHHH------HHHHHHHHhhhccC-C
Confidence 379999999999999999999988876553 33456788888899999999997666 78999999887542 3
Q ss_pred CCCchhhhhc-cHHHHHH-HhcCHHHHhhHh
Q 013867 358 ESEGVETKVD-RTDIVAL-ARGGYAEALSVQ 386 (435)
Q Consensus 358 ~hp~~a~~l~-nla~~~~-a~G~yaeal~~~ 386 (435)
.||.+-..++ --|+++. ..++|.+|...+
T Consensus 174 ~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F 204 (394)
T 3txn_A 174 CPPKVQGALDLQSGILHAADERDFKTAFSYF 204 (394)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred CCHHHHHHHHHHhhHHHHHhccCHHHHHHHH
Confidence 5665444444 4667777 799999997754
No 229
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=92.18 E-value=0.68 Score=39.77 Aligned_cols=71 Identities=14% Similarity=0.224 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcc-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 013867 61 VVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAES-WRGISLLAMSTLLYESGNYVEAIEKLQKVENFKN 139 (435)
Q Consensus 61 vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp-~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e 139 (435)
.....-+||+++.++. ....-.+++.+++..+.. +.| ..-..++.||..+++.|+|++|..+++..+.+-+
T Consensus 34 s~~~~F~yAw~Lv~S~-~~~d~~~GI~lLe~l~~~-------~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP 105 (126)
T 1nzn_A 34 SKSTQFEYAWCLVRTR-YNDDIRKGIVLLEELLPK-------GSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEP 105 (126)
T ss_dssp CHHHHHHHHHHHTTSS-SHHHHHHHHHHHHHHTTT-------SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred cHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhc-------CCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC
Confidence 3466779999998765 556677899999987753 224 5778899999999999999999999998865543
No 230
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=91.52 E-value=3.9 Score=43.24 Aligned_cols=50 Identities=12% Similarity=0.090 Sum_probs=33.4
Q ss_pred HHHHcCCHHHHHHHHHH------HHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhh
Q 013867 283 LEAHMGNFGDAEEILTR------TLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQE 333 (435)
Q Consensus 283 ly~~qG~y~eAe~l~~r------AL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e 333 (435)
+|..+|++++|+++|.+ |+.++++ +|+.+..+...+...+.-+..+|+++
T Consensus 745 ~~~~~g~~~~a~~~~~~~~~~~~A~~lA~~-~~~~~~~i~~~~~~~~~~L~~~~~~~ 800 (814)
T 3mkq_A 745 AYWIAGDIQGAKDLLIKSQRFSEAAFLGST-YGLGDNEVNDIVTKWKENLILNGKNT 800 (814)
T ss_dssp HHHHHTCHHHHHHHHHHTTCHHHHHHHHHH-TTCCHHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHcCCHHHHHHHHHHcCChHHHHHHHHH-hCCChHHHHHHHHHHHHHHHhccchh
Confidence 56667888888888754 4444443 56655557777777777777777643
No 231
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.48 E-value=1.1 Score=45.58 Aligned_cols=105 Identities=14% Similarity=0.059 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013867 222 AALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTL 301 (435)
Q Consensus 222 ~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL 301 (435)
+...+|.+|...|+|++|...|.++.+-. -+ .+ + .+....++-.++...++|..+...+.+|.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~---~~------~~--~------kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKA---IS------TG--A------KIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHH---TC------CC--S------HHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhc---CC------hH--H------HHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 45568999999999999999999987762 21 11 1 23455677788999999999999999997
Q ss_pred HHHHHhhCCCChhHHH-HHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 302 TKTEELFGSHHPKVGV-VLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 302 ~I~e~~lG~~HP~va~-~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
.+.++ ..||+.-. .-..-|..+...++|.+| -.+|..++..+
T Consensus 196 ~~~~~---~~d~~~~~~lk~~~gl~~l~~r~f~~A------a~~f~e~~~t~ 238 (429)
T 4b4t_R 196 SMIEK---GGDWERRNRYKTYYGIHCLAVRNFKEA------AKLLVDSLATF 238 (429)
T ss_dssp HHHTT---CCCTHHHHHHHHHHHHGGGGTSCHHHH------HHHHHHHHHHS
T ss_pred Hhhhc---CCCHHHHHHHHHHHHHHHHHhChHHHH------HHHHHHHhccC
Confidence 77554 45676543 344455556677776655 45665554443
No 232
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=91.47 E-value=0.61 Score=40.55 Aligned_cols=68 Identities=18% Similarity=0.217 Sum_probs=56.6
Q ss_pred HHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcc-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 013867 62 VLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAES-WRGISLLAMSTLLYESGNYVEAIEKLQKVENFK 138 (435)
Q Consensus 62 A~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp-~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~ 138 (435)
....-+||+++.++. ......+++.+++..+... | ..-..++.||.-+++.|+|++|..+.++.+.+-
T Consensus 40 ~qt~F~yAw~Lv~S~-~~~d~~~GI~LLe~l~~~~--------~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~e 108 (134)
T 3o48_A 40 IQSRFNYAWGLIKST-DVNDERLGVKILTDIYKEA--------ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 108 (134)
T ss_dssp HHHHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHC--------GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC
T ss_pred hhhHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhcC--------cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 367789999998875 6678889999999988532 3 478889999999999999999999888876544
No 233
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=90.65 E-value=0.77 Score=40.37 Aligned_cols=70 Identities=17% Similarity=0.198 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 013867 60 PVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENF 137 (435)
Q Consensus 60 ~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i 137 (435)
......-+||+++.++. ....-.+++.+++..+... ++ ..-..++.||.-+++.|+|++|..+.+..+.+
T Consensus 37 vs~~t~F~YAw~Lv~S~-~~~di~~GI~LLe~l~~~~-----~~--~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKST-DVNDERLGVKILTDIYKEA-----ES--RRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp SCHHHHHHHHHHHHHSS-SHHHHHHHHHHHHHHHHHC-----CS--THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhcC-----cc--chhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 45667789999998876 6677889999999998632 11 47788999999999999999999988887554
No 234
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=90.03 E-value=1.2 Score=46.55 Aligned_cols=78 Identities=14% Similarity=0.187 Sum_probs=58.8
Q ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013867 223 ALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLT 302 (435)
Q Consensus 223 a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~ 302 (435)
...+|.+.+=++.++.|..+|++|+.+ .|..| ...|-||.++..+|++-+|.-+|.|+|.
T Consensus 155 l~~LGDL~RY~~~~~~A~~~Y~~A~~~---------~P~~G-----------~~~nqLavla~~~~~~l~a~y~y~rsl~ 214 (497)
T 1ya0_A 155 LVHLGDIARYRNQTSQAESYYRHAAQL---------VPSNG-----------QPYNQLAILASSKGDHLTTIFYYCRSIA 214 (497)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---------CTTBS-----------HHHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred HHHcccHHHHHHHHHHHHHHHHHHHHh---------CCCCC-----------chHHHHHHHHhcccccHHHHHHHHHHHh
Confidence 455677777788899999999999999 23444 3567899999999999999999999986
Q ss_pred HHHHhhCCCChhHHHHHHHHHHHHHH
Q 013867 303 KTEELFGSHHPKVGVVLTCLALMFRN 328 (435)
Q Consensus 303 I~e~~lG~~HP~va~~L~nLA~ly~~ 328 (435)
. .+| ...+..||..++..
T Consensus 215 ~-------~~P-f~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 215 V-------KFP-FPAASTNLQKALSK 232 (497)
T ss_dssp S-------SBC-CHHHHHHHHHHHHH
T ss_pred c-------CCC-ChhHHHHHHHHHHH
Confidence 4 333 34455555555543
No 235
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.92 E-value=1.5 Score=44.53 Aligned_cols=97 Identities=16% Similarity=0.086 Sum_probs=72.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCC
Q 013867 277 TFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPP 356 (435)
Q Consensus 277 l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~ 356 (435)
+..||..|.+.|+|++|.+.|.++. +.+.+..| ....+-++-.++-..+++..+ ...+.++-.+...
T Consensus 134 ~~~la~~~~~~Gd~~~A~~~~~~~~---~~~~~~~~--kid~~l~~irl~l~~~d~~~~------~~~~~ka~~~~~~-- 200 (429)
T 4b4t_R 134 WINLGEYYAQIGDKDNAEKTLGKSL---SKAISTGA--KIDVMLTIARLGFFYNDQLYV------KEKLEAVNSMIEK-- 200 (429)
T ss_dssp CHHHHHHHHHHCCCTTHHHHHHHHH---HHHTCCCS--HHHHHHHHHHHHHHHTCHHHH------HHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH---HhcCChHH--HHHHHHHHHHHHHHhccHHHH------HHHHHHHHHhhhc--
Confidence 4689999999999999999999964 56778776 677788888899999998766 7889999888753
Q ss_pred CCCCchhhhhc-cHHHHHHHhcCHHHHhhHh
Q 013867 357 LESEGVETKVD-RTDIVALARGGYAEALSVQ 386 (435)
Q Consensus 357 ~~hp~~a~~l~-nla~~~~a~G~yaeal~~~ 386 (435)
.++|+.-..+. ..+++++..++|.+|...+
T Consensus 201 ~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f 231 (429)
T 4b4t_R 201 GGDWERRNRYKTYYGIHCLAVRNFKEAAKLL 231 (429)
T ss_dssp CCCTHHHHHHHHHHHHGGGGTSCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhChHHHHHHHH
Confidence 23454322222 3455667888898886544
No 236
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=87.91 E-value=3.6 Score=32.74 Aligned_cols=62 Identities=10% Similarity=0.027 Sum_probs=43.4
Q ss_pred ccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHHHHH
Q 013867 267 MALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELF-GSHHPKVGVVLTCLALMFRN 328 (435)
Q Consensus 267 ~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~l-G~~HP~va~~L~nLA~ly~~ 328 (435)
|.|.......+..-|.-+...|+|++|..+|.+|++.+...+ ....|..-..+.....-|..
T Consensus 9 ~~~~~~~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ll~alk~e~d~~~k~~lr~K~~eYl~ 71 (86)
T 4a5x_A 9 MDPQSTAAATVLKRAVELDSESRYPQALVCYQEGIDLLLQVLKGTKDNTKRCNLREKISKYMD 71 (86)
T ss_dssp --CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH
Confidence 445543434556778888999999999999999999988876 45566665555554444443
No 237
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=87.73 E-value=1.1 Score=46.91 Aligned_cols=62 Identities=18% Similarity=0.183 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHH
Q 013867 276 ATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEF 351 (435)
Q Consensus 276 ~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I 351 (435)
++..||.+.+.++.++.|+.+|.+|+.+ .|+.+..+|-||.++..+|+.-+| .=.|-|+|..
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~--------~P~~G~~~nqLavla~~~~~~l~a------~y~y~rsl~~ 215 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQL--------VPSNGQPYNQLAILASSKGDHLTT------IFYYCRSIAV 215 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTBSHHHHHHHHHHHHTTCHHHH------HHHHHHHHSS
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHh--------CCCCCchHHHHHHHHhcccccHHH------HHHHHHHHhc
Confidence 6779999999999999999999999997 799999999999999999986554 6778888754
No 238
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=86.80 E-value=7.5 Score=33.17 Aligned_cols=90 Identities=14% Similarity=0.057 Sum_probs=67.2
Q ss_pred hhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCC
Q 013867 233 TRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHH 312 (435)
Q Consensus 233 ~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~H 312 (435)
......++.-|+++++. + + . +..+..++|..+.+..+-.+ -++.+.+.+.++-.++
T Consensus 14 ~~~l~~~~~~y~~e~~~-----~---~--~----------s~~~~F~yAw~Lv~S~~~~d----~~~GI~lLe~l~~~~~ 69 (126)
T 1nzn_A 14 VEDLLKFEKKFQSEKAA-----G---S--V----------SKSTQFEYAWCLVRTRYNDD----IRKGIVLLEELLPKGS 69 (126)
T ss_dssp HHHHHHHHHHHHHHHHH-----S---C--C----------CHHHHHHHHHHHTTSSSHHH----HHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHHHHHHhcc-----C---C--C----------cHHHHHHHHHHHHcCCCHHH----HHHHHHHHHHHHhcCC
Confidence 44566677777777654 1 1 1 23577899999988776654 3467777777777777
Q ss_pred h-hHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 313 P-KVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 313 P-~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
| .--..+..||.-|.+.|+|++| ....++.|++-
T Consensus 70 p~~~Rd~lY~LAvg~yklg~Y~~A------~~~~~~lL~~e 104 (126)
T 1nzn_A 70 KEEQRDYVFYLAVGNYRLKEYEKA------LKYVRGLLQTE 104 (126)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHC
T ss_pred cchHHHHHHHHHHHHHHhhhHHHH------HHHHHHHHHhC
Confidence 8 7899999999999999998877 67788888775
No 239
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=84.87 E-value=1.4 Score=41.68 Aligned_cols=54 Identities=11% Similarity=0.030 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHH
Q 013867 83 SQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYE-SGNYVEAIEKLQKVEN 136 (435)
Q Consensus 83 ~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~-qGky~eA~~l~~ral~ 136 (435)
++|...|++|+.+....+.|.||-......|.+..|++ .|+-++|..+.++|.+
T Consensus 147 e~a~~aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd 201 (234)
T 2br9_A 147 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFD 201 (234)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 57899999999999888999999999999999999887 7999999999999855
No 240
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=84.57 E-value=2.1 Score=41.18 Aligned_cols=54 Identities=15% Similarity=0.097 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHh
Q 013867 83 SQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYE-SGNYVEAIEKLQKVENF 137 (435)
Q Consensus 83 ~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~-qGky~eA~~l~~ral~i 137 (435)
++|...|++|+.+. ..+.|.||-......|.+..|++ .|+-++|..+.++|.+-
T Consensus 173 e~a~~aY~~A~~iA-~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~ 227 (260)
T 2npm_A 173 EDALKAYKDATVVA-KDLEPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKEAFEM 227 (260)
T ss_dssp HHHHHHHHHHHHHH-TTSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 57899999999999 88999999999999999999887 79999999999998653
No 241
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=83.22 E-value=16 Score=40.05 Aligned_cols=59 Identities=12% Similarity=0.131 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013867 222 AALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRT 300 (435)
Q Consensus 222 ~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rA 300 (435)
...--+.++.++|+|+-|.++-+||+.+. |.+ -.+...|+.+|..+|+|+.|.--+.-+
T Consensus 339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a------------------Pse--F~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 339 LLNIQTNFLLNRGDYELALGVSNTSTELA------------------LDS--FESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------SSC--HHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcC------------------chh--hHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 33444788889999999999999999881 222 246789999999999999998554443
No 242
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=83.14 E-value=2 Score=41.30 Aligned_cols=54 Identities=11% Similarity=0.032 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHH
Q 013867 83 SQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYE-SGNYVEAIEKLQKVEN 136 (435)
Q Consensus 83 ~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~-qGky~eA~~l~~ral~ 136 (435)
++|...|++|+.+....+.|.||-......|.+..|++ .|+-++|..+.++|++
T Consensus 152 e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd 206 (260)
T 1o9d_A 152 ESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD 206 (260)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 47899999999999888999999999999999999887 6999999999999855
No 243
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=82.99 E-value=8.9 Score=38.20 Aligned_cols=109 Identities=19% Similarity=0.161 Sum_probs=79.6
Q ss_pred HhhchHHHHHHHHHHHHHHHHhcccCCCCCcccc---cc-c-----chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013867 232 ATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSC---NM-A-----LEEVALAATFALGQLEAHMGNFGDAEEILTRTLT 302 (435)
Q Consensus 232 ~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~---~~-~-----~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~ 302 (435)
..|+.++|...+++||+.+ .| + .+... .. . .++..+.++..++..+...|++++|...+++++.
T Consensus 127 ~~~~~~~a~~~l~~Al~L~---rG---~-~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~ 199 (388)
T 2ff4_A 127 AAGRFEQASRHLSAALREW---RG---P-VLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTF 199 (388)
T ss_dssp HTTCHHHHHHHHHHHHTTC---CS---S-TTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHhc---CC---C-CCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4688999999999999994 44 1 22210 00 0 1233445666788899999999999999999876
Q ss_pred HHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh-cCCCCCCCc
Q 013867 303 KTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL-KAPPLESEG 361 (435)
Q Consensus 303 I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~-k~~~~~hp~ 361 (435)
+ ||--=.....|-.+|...|+..+| ...|+++-..+ +.+|.+-..
T Consensus 200 ~--------~P~~E~~~~~lm~al~~~Gr~~~A------l~~y~~~r~~L~~eLG~~P~~ 245 (388)
T 2ff4_A 200 E--------HPYREPLWTQLITAYYLSDRQSDA------LGAYRRVKTTLADDLGIDPGP 245 (388)
T ss_dssp H--------STTCHHHHHHHHHHHHTTTCHHHH------HHHHHHHHHHHHHHHSCCCCH
T ss_pred h--------CCCCHHHHHHHHHHHHHcCCHHHH------HHHHHHHHHHHHHHhCCCCCH
Confidence 5 666556777788889999997665 89999999988 456766443
No 244
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=82.70 E-value=1.5 Score=41.33 Aligned_cols=60 Identities=8% Similarity=0.009 Sum_probs=52.4
Q ss_pred hhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhh
Q 013867 79 DESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLY-ESGNYVEAIEKLQKVENFK 138 (435)
Q Consensus 79 ~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~-~qGky~eA~~l~~ral~i~ 138 (435)
.|.-++|...|++|+.+..+.+.|.||-......|.+..|+ -.++-++|..+.++|+++.
T Consensus 138 ~g~~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd~~ 198 (227)
T 2o8p_A 138 LCSLEDSKKIHQDAFTLLCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKIL 198 (227)
T ss_dssp SSCHHHHHHHHHHHHHHHHHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 34478999999999999988899999999999999999866 4899999999999997653
No 245
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=82.62 E-value=5.2 Score=37.78 Aligned_cols=66 Identities=8% Similarity=0.039 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHH-HHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCC
Q 013867 291 GDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMF-RNKAMQEHSSALLIQEGLYRRALEFLKAPPLE 358 (435)
Q Consensus 291 ~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly-~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~ 358 (435)
++|...|++|++|.++-+.|.||--....-|.+..| .-.++.++| ..-|..-|..|++-+..+..+
T Consensus 147 e~a~~aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A--~~lAk~afd~Ai~eld~l~ee 213 (234)
T 2br9_A 147 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRA--CRLAKAAFDDAIAELDTLSEE 213 (234)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHH--HHHHHHHHHHHHHTGGGCCTT
T ss_pred HHHHHHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHH--HHHHHHHHHHHHHhhhccChh
Confidence 468999999999999999999998655555555555 557888888 455666777777777655433
No 246
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=82.60 E-value=2.1 Score=40.58 Aligned_cols=56 Identities=14% Similarity=0.072 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHh
Q 013867 82 YSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYE-SGNYVEAIEKLQKVENF 137 (435)
Q Consensus 82 Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~-qGky~eA~~l~~ral~i 137 (435)
-++|...|++|+.+..+.+.|.||-......|.+..|++ .++-++|..+.++|++-
T Consensus 149 ~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyyEiln~~~~Ac~lAk~Afd~ 205 (236)
T 3iqu_A 149 IDSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTFDE 205 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 458899999999999889999999999999999999775 59999999999998653
No 247
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=82.59 E-value=1.9 Score=41.09 Aligned_cols=56 Identities=13% Similarity=-0.027 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHh
Q 013867 82 YSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYE-SGNYVEAIEKLQKVENF 137 (435)
Q Consensus 82 Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~-qGky~eA~~l~~ral~i 137 (435)
-++|...|++|+.+..+.+.|.||-......|.+..|++ .++-++|..+.++|++-
T Consensus 147 ~~~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Afd~ 203 (248)
T 3uzd_A 147 VESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFDD 203 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 357899999999999888999999999999999999777 79999999999998653
No 248
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=81.89 E-value=2.1 Score=41.11 Aligned_cols=55 Identities=11% Similarity=0.002 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHh
Q 013867 83 SQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYE-SGNYVEAIEKLQKVENF 137 (435)
Q Consensus 83 ~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~-qGky~eA~~l~~ral~i 137 (435)
++|...|++|+.+..+.+.|.||-......|.+..|++ .++-++|..+.++|++-
T Consensus 173 e~a~~aY~~A~~iA~~~L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd~ 228 (261)
T 3ubw_A 173 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDD 228 (261)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 57889999999999889999999999999999999887 69999999999998653
No 249
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=79.56 E-value=28 Score=30.91 Aligned_cols=104 Identities=17% Similarity=0.068 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHhhch------HHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHH
Q 013867 222 AALSYGEYLHATRNF------LLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEE 295 (435)
Q Consensus 222 ~a~~la~~~~~~G~y------~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~ 295 (435)
.-.+|...+...|+- ++=.+.|+||++-.- |.- ... -.-.+--..+.|.+ ...++.++|..
T Consensus 15 ~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~P--------p~k-~~~---wrrYI~LWIrYA~~-~ei~D~d~aR~ 81 (161)
T 4h7y_A 15 DWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALP--------PDK-YGQ---NESFARIQVRFAEL-KAIQEPDDARD 81 (161)
T ss_dssp HHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSC--------GGG-GTT---CHHHHHHHHHHHHH-HHHHCGGGCHH
T ss_pred HHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCC--------ccc-ccc---HHHHHHHHHHHHHH-HHhcCHHHHHH
Confidence 333444444444555 666789999988721 110 111 11233334566755 56699999999
Q ss_pred HHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 296 ILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 296 l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
.|+.|+.+ |-..|-....-|..--+||+..+| ..++.+|+...
T Consensus 82 vy~~a~~~--------hKkFAKiwi~~AqFEiRqgnl~kA------RkILg~AiG~~ 124 (161)
T 4h7y_A 82 YFQMARAN--------CKKFAFVHISFAQFELSQGNVKKS------KQLLQKAVERG 124 (161)
T ss_dssp HHHHHHHH--------CTTBHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHTT
T ss_pred HHHHHHHH--------hHHHHHHHHHHHHHHHHcccHHHH------HHHHHHHhccC
Confidence 99999997 556688888889999999997766 78888888844
No 250
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.18 E-value=11 Score=38.37 Aligned_cols=99 Identities=18% Similarity=0.124 Sum_probs=72.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChh-HHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHH-HhcC
Q 013867 277 TFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPK-VGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALE-FLKA 354 (435)
Q Consensus 277 l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~-va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~-I~k~ 354 (435)
..-|+.+|..+|+|.+|..++.... .+++|...-. -...+.-...+|..++++.+| ..+++++.. +...
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~---~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a------~~~~~ki~~~~~~~ 210 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQ---VETYGSMEMSEKIQFILEQMELSILKGDYSQA------TVLSRKILKKTFKN 210 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHH---HHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHH------HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHH---HHHHhcccHHHHHHHHHHHHHHHHHCCCHHHH------HHHHHHHHHhhccc
Confidence 4579999999999999999998764 6788876544 456677788999999997766 788888754 3332
Q ss_pred CCCCCCch-hhhhccHHHHHHHhcCHHHHhhHh
Q 013867 355 PPLESEGV-ETKVDRTDIVALARGGYAEALSVQ 386 (435)
Q Consensus 355 ~~~~hp~~-a~~l~nla~~~~a~G~yaeal~~~ 386 (435)
+.+|+. +.-..-.+.++...++|.+|...+
T Consensus 211 --~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y 241 (445)
T 4b4t_P 211 --PKYESLKLEYYNLLVKISLHKREYLEVAQYL 241 (445)
T ss_dssp --SCCHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred --CCcHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 345552 223335677778889999887654
No 251
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=77.92 E-value=46 Score=32.49 Aligned_cols=62 Identities=16% Similarity=0.190 Sum_probs=42.0
Q ss_pred hhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Q 013867 79 DESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQ 158 (435)
Q Consensus 79 ~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~ 158 (435)
.|+|=||.++|+ .+..=|.++++|++|++++...-.. ..+
T Consensus 26 ~G~yYEAhQ~~R----------------------tl~~Ry~~~~~~~eAidlL~~ga~~------------------ll~ 65 (312)
T 2wpv_A 26 AGDYYEAHQTLR----------------------TIANRYVRSKSYEHAIELISQGALS------------------FLK 65 (312)
T ss_dssp HTCHHHHHHHHH----------------------HHHHHHHHTTCHHHHHHHHHHHHHH------------------HHH
T ss_pred ccChHHHHHHHH----------------------HHHHHHHHhcCHHHHHHHHHHHHHH------------------HHH
Confidence 466777777666 4566688899999999987653111 112
Q ss_pred cCCCcchHHHHHHHHHHHHhcC
Q 013867 159 LGQDDTSSVVADKCLQLCEKHK 180 (435)
Q Consensus 159 ~g~~~~A~~~~~~~~~l~~~~~ 180 (435)
.|+...+.+++..+++.+.+..
T Consensus 66 ~~Q~~sa~DLa~llvev~~~~~ 87 (312)
T 2wpv_A 66 AKQGGSGTDLIFYLLEVYDLAE 87 (312)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCcchHHHHHHHHHHHHHHcC
Confidence 3666667777777777777766
No 252
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=77.27 E-value=9.6 Score=36.53 Aligned_cols=66 Identities=8% Similarity=0.028 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHH-HhhhhhhhhhhHHHHHHHHHHHHHhcCCCCC
Q 013867 291 GDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFR-NKAMQEHSSALLIQEGLYRRALEFLKAPPLE 358 (435)
Q Consensus 291 ~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~-~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~ 358 (435)
+.|...|++|++|.++-+.|-||--.-..-|.+..|. -.++.++| ..-|..-|..|+.-+..+..+
T Consensus 173 e~a~~aY~~A~~iA~~~L~pThPirLGLaLNfSVFyYEIln~p~~A--c~LAk~AFd~Ai~eLd~L~ee 239 (261)
T 3ubw_A 173 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRA--CRLAKAAFDDAIAELDTLSEE 239 (261)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHH--HHHHHHHHHHHHHTGGGCCTT
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHH--HHHHHHHHHHHHHHhhccChh
Confidence 5689999999999999999999997666666666655 46888887 344556666666666554433
No 253
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=77.19 E-value=11 Score=37.61 Aligned_cols=70 Identities=14% Similarity=-0.124 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013867 222 AALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTL 301 (435)
Q Consensus 222 ~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL 301 (435)
+...++..+...|++++|....++.+++ +|. .| ....-|-.+|...|+..+|...|+++-
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~---------~P~-------~E----~~~~~lm~al~~~Gr~~~Al~~y~~~r 232 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFE---------HPY-------RE----PLWTQLITAYYLSDRQSDALGAYRRVK 232 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---------STT-------CH----HHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh---------CCC-------CH----HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3445667778899999999999999877 111 11 123456667899999999999999999
Q ss_pred HHHHHhhCCC
Q 013867 302 TKTEELFGSH 311 (435)
Q Consensus 302 ~I~e~~lG~~ 311 (435)
....+-||-+
T Consensus 233 ~~L~~eLG~~ 242 (388)
T 2ff4_A 233 TTLADDLGID 242 (388)
T ss_dssp HHHHHHHSCC
T ss_pred HHHHHHhCCC
Confidence 9999989954
No 254
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=77.10 E-value=12 Score=42.91 Aligned_cols=91 Identities=15% Similarity=0.033 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013867 222 AALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTL 301 (435)
Q Consensus 222 ~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL 301 (435)
+.+++-..|+..|+.++|..++.+.-.... +| .. |+ +.++|-|=.-|++.|++++|..+|.+-.
T Consensus 129 TynaLIdglcK~G~leeA~~Lf~eM~~m~~--kG------~~-----Pd---vvTYNtLI~Glck~G~~~eA~~Lf~eM~ 192 (1134)
T 3spa_A 129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQ--KR------KL-----LT---LDMYNAVMLGWARQGAFKELVYVLFMVK 192 (1134)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSHH--HH------TT-----CC---HHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhh--cC------CC-----CC---HhHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 455566678999999999999987665421 22 01 32 3456777778999999999999999874
Q ss_pred HHHHHhhCCCChhHHHHHHHHHHHHHHhhhh-hhh
Q 013867 302 TKTEELFGSHHPKVGVVLTCLALMFRNKAMQ-EHS 335 (435)
Q Consensus 302 ~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~-e~A 335 (435)
+ -| -.|++ .++|.|=..+++.|+. ++|
T Consensus 193 ~-----~G-~~PDv-vTYntLI~glcK~G~~~e~A 220 (1134)
T 3spa_A 193 D-----AG-LTPDL-LSYAAALQCMGRQDQDAGTI 220 (1134)
T ss_dssp H-----TT-CCCCH-HHHHHHHHHHHHHTCCHHHH
T ss_pred H-----cC-CCCcH-HHHHHHHHHHHhCCCcHHHH
Confidence 3 23 23443 4566666677788874 444
No 255
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=75.62 E-value=11 Score=35.73 Aligned_cols=65 Identities=11% Similarity=0.125 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHH-HHhhhhhhhhhhHHHHHHHHHHHHHhcCCCC
Q 013867 291 GDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMF-RNKAMQEHSSALLIQEGLYRRALEFLKAPPL 357 (435)
Q Consensus 291 ~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly-~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~ 357 (435)
+.|...|++|+.|..+.+.|.||--.-..-|.+..| .-.++.++| ..-|..-|..|+.-+..+..
T Consensus 148 ~~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~~~~A--c~lAk~Afd~Ai~eld~l~e 213 (248)
T 3uzd_A 148 ESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQA--CHLAKTAFDDAIAELDTLNE 213 (248)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHH--HHHHHHHHHHHHHTGGGCCT
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHH--HHHHHHHHHHHHHHhhcCCc
Confidence 578999999999999999999998666666666665 447887877 34455566666665554433
No 256
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=75.50 E-value=8.9 Score=36.76 Aligned_cols=67 Identities=9% Similarity=0.052 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHH-HHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCC
Q 013867 291 GDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMF-RNKAMQEHSSALLIQEGLYRRALEFLKAPPLES 359 (435)
Q Consensus 291 ~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly-~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~h 359 (435)
+.|...|++|+.|.+.-+.|.||--.-..-|.+..| .-.++.++| ...|..-|..|+.-+..+..++
T Consensus 152 e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~A--c~lAk~Afd~Ai~eld~L~Ees 219 (260)
T 1o9d_A 152 ESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRA--CNLAKQAFDEAIAELDTLGEES 219 (260)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHH--HHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHH--HHHHHHHHHHHHHhhhccChhh
Confidence 468999999999999999999998655555555555 557888888 4556677888877776555443
No 257
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=74.96 E-value=21 Score=29.83 Aligned_cols=53 Identities=9% Similarity=0.134 Sum_probs=41.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhC-C-CChhHHHHHHHHHHHHHHh
Q 013867 277 TFALGQLEAHMGNFGDAEEILTRTLTKTEELFG-S-HHPKVGVVLTCLALMFRNK 329 (435)
Q Consensus 277 l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG-~-~HP~va~~L~nLA~ly~~q 329 (435)
+...|.-....|+|++|..+|.+|++.+..++- . ..|..-..+.....-|..+
T Consensus 21 lv~~Ave~D~ag~y~eAl~lY~~Aie~l~~alk~e~~~~~~k~~lr~K~~eYl~R 75 (117)
T 2cpt_A 21 LASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEYLDR 75 (117)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHH
Confidence 456777788899999999999999999998873 3 5666667776666666543
No 258
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=73.97 E-value=13 Score=33.16 Aligned_cols=67 Identities=9% Similarity=0.042 Sum_probs=53.9
Q ss_pred hHHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 013867 59 NPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFK 138 (435)
Q Consensus 59 ~~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~ 138 (435)
..-+-..++||.-. ..++.++|..+|+.|+++ .+. -|.....-|..-.+||+.+.|..++.+|+-+.
T Consensus 58 rrYI~LWIrYA~~~-----ei~D~d~aR~vy~~a~~~-hKk-------FAKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 58 ESFARIQVRFAELK-----AIQEPDDARDYFQMARAN-CKK-------FAFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp HHHHHHHHHHHHHH-----HHHCGGGCHHHHHHHHHH-CTT-------BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHH-----HhcCHHHHHHHHHHHHHH-hHH-------HHHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 45567778888663 246899999999999987 333 38888899999999999999999999985543
No 259
>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*
Probab=73.19 E-value=3.5 Score=39.78 Aligned_cols=56 Identities=18% Similarity=0.130 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHhccCcCC--CCCcchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHh
Q 013867 82 YSQGMLVLEQCLSTQPSDG--QLAESWRGISLLAMSTLLYE-SGNYVEAIEKLQKVENF 137 (435)
Q Consensus 82 Y~eA~~~~eqaL~i~~~~l--G~~Hp~~A~~l~nLa~ly~~-qGky~eA~~l~~ral~i 137 (435)
-++|+..|++|+.|..+.+ .|.||-......|.+..|++ .++-++|..+.++|.+-
T Consensus 168 ~e~a~~aYq~A~eiA~~~L~~~pThPiRLGLaLNfSVFyYEIln~p~~Ac~lAk~AFde 226 (268)
T 3efz_A 168 IKQAVEFYEDALQRERSFLEKYPSDPLYLATILNYTILKYDLLGNPEGAMKFANRAIQA 226 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4688999999999998888 99999999999999999885 79999999999998654
No 260
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=72.26 E-value=9.7 Score=36.49 Aligned_cols=63 Identities=11% Similarity=0.067 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHH-HHhhhhhhhhhhHHHHHHHHHHHHHhcCCC
Q 013867 291 GDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMF-RNKAMQEHSSALLIQEGLYRRALEFLKAPP 356 (435)
Q Consensus 291 ~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly-~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~ 356 (435)
+.|...|++|++|. .-+.|-||--.-..-|.+..| .-.++.++| ...|..-|..|+.-+..+.
T Consensus 173 e~a~~aY~~A~~iA-~~L~pthPirLGLaLNfSVFyYEiln~~~~A--c~lAk~Afd~Ai~eld~L~ 236 (260)
T 2npm_A 173 EDALKAYKDATVVA-KDLEPTHPIRLGLALNFSVFHYEILNEPRAA--IDMAKEAFEMAIEQLDKLS 236 (260)
T ss_dssp HHHHHHHHHHHHHH-TTSCTTCHHHHHHHHHHHHHHHHTSCCHHHH--HHHHHHHHHHHHTTGGGCC
T ss_pred HHHHHHHHHHHHHH-HhCCCCCcHHHHHHHHHHHHHHHHcCCHHHH--HHHHHHHHHHHHHhhhcCC
Confidence 46899999999999 889999998665555565555 457888888 3445566666666665443
No 261
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=72.08 E-value=10 Score=32.74 Aligned_cols=69 Identities=7% Similarity=0.017 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCh-hHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHH
Q 013867 273 ALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHP-KVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEF 351 (435)
Q Consensus 273 ~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP-~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I 351 (435)
+..+..|+|-.+.+..+-++ .++++.+.+..+- ++| ..-..+.-||.-+.+.|+|++| ....++.|++
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d----~~~GI~LLe~l~~-~~~~~~Rd~LYyLAvg~yklgdY~~A------r~y~d~lL~~ 107 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVND----ERLGVKILTDIYK-EAESRRRECLYYLTIGCYKLGEYSMA------KRYVDTLFEH 107 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHH----HHHHHHHHHHHHH-HCGGGHHHHHHHHHHHHHHHTCHHHH------HHHHHHHHTT
T ss_pred ChhhHHHHHHHHHcCCCHHH----HHHHHHHHHHHHh-cCcchhHHHHHHHHHHHHHhhhHHHH------HHHHHHHHhh
Confidence 34678899988877766532 3345555555553 457 6899999999999999998877 5556665554
Q ss_pred h
Q 013867 352 L 352 (435)
Q Consensus 352 ~ 352 (435)
-
T Consensus 108 e 108 (134)
T 3o48_A 108 E 108 (134)
T ss_dssp C
T ss_pred C
Confidence 3
No 262
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=71.49 E-value=14 Score=34.81 Aligned_cols=62 Identities=8% Similarity=0.111 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHH-HHhhhhhhhhhhHHHHHHHHHHHHHhcC
Q 013867 291 GDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMF-RNKAMQEHSSALLIQEGLYRRALEFLKA 354 (435)
Q Consensus 291 ~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly-~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~ 354 (435)
+.|...|++|++|.++-+.|.||--.-..-|.+..| .-.++.++| ..-|..-|..|+.-+..
T Consensus 150 e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyyEiln~~~~A--c~lAk~Afd~Ai~eld~ 212 (236)
T 3iqu_A 150 DSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEA--ISLAKTTFDEAMADLHT 212 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSSCHHHH--HHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHH--HHHHHHHHHHHHHHhhc
Confidence 568899999999999999999998666666666665 466887777 34445556666555543
No 263
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=71.41 E-value=8.9 Score=30.21 Aligned_cols=45 Identities=9% Similarity=0.018 Sum_probs=32.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhC-CCChhHHHHHHH
Q 013867 277 TFALGQLEAHMGNFGDAEEILTRTLTKTEELFG-SHHPKVGVVLTC 321 (435)
Q Consensus 277 l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG-~~HP~va~~L~n 321 (435)
+..-|.-....|+|+||..+|.+|++.....+= ...|..-..+..
T Consensus 22 lv~~Ave~D~~g~y~eAl~lY~~aie~l~~alk~e~d~~~k~~ir~ 67 (83)
T 2w2u_A 22 YAINAVKADKEGNAEEAITNYKKAIEVLAQLVSLYRDGSTAAIYEQ 67 (83)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSTTSSTHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 445677888999999999999999999887642 233444444433
No 264
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=68.57 E-value=93 Score=30.69 Aligned_cols=50 Identities=18% Similarity=0.246 Sum_probs=33.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcC
Q 013867 113 AMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHK 180 (435)
Q Consensus 113 nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~ 180 (435)
.++.=|.++++|++|++++...-.+ .++.|+...+.+++..+++++.+.+
T Consensus 40 Ti~~Ry~~~k~y~eAidLL~~GA~~------------------ll~~~Q~~sg~DL~~llvevy~~~~ 89 (336)
T 3lpz_A 40 LVAARYSKQGNWAAAVDILASVSQT------------------LLRSGQGGSGGDLAVLLVDTFRQAG 89 (336)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH------------------HHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhcCHHHHHHHHHHHHHH------------------HHHCCCcchHHHHHHHHHHHHHHcC
Confidence 3555688999999999987654111 1123666666677777777777766
No 265
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=67.90 E-value=82 Score=34.49 Aligned_cols=83 Identities=17% Similarity=0.080 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHHHHhh---CCCC-------hhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCC
Q 013867 290 FGDAEEILTRTLTKTEELF---GSHH-------PKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLES 359 (435)
Q Consensus 290 y~eAe~l~~rAL~I~e~~l---G~~H-------P~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~h 359 (435)
=-+|..+..++|+-....+ -+.+ |.....|+.-+..+..+|+|+-| ..+-+||..+.
T Consensus 301 Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~Qa~FLl~K~~~elA------L~~Ak~AV~~a------- 367 (754)
T 4gns_B 301 ELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNIQTNFLLNRGDYELA------LGVSNTSTELA------- 367 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHC-------
T ss_pred hHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHHHHHHHhccCcHHHH------HHHHHHHHhcC-------
Confidence 3457788888875433222 2233 33445566667777777887655 88888888887
Q ss_pred CchhhhhccHHHHHHHhcCHHHHhhH
Q 013867 360 EGVETKVDRTDIVALARGGYAEALSV 385 (435)
Q Consensus 360 p~~a~~l~nla~~~~a~G~yaeal~~ 385 (435)
|+-..+-..|+.+|...|+|+.||..
T Consensus 368 PseF~tW~~La~vYi~l~d~e~ALLt 393 (754)
T 4gns_B 368 LDSFESWYNLARCHIKKEEYEKALFA 393 (754)
T ss_dssp SSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred chhhHHHHHHHHHHHHhccHHHHHHH
Confidence 66566667899999999999999874
No 266
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=66.22 E-value=25 Score=36.09 Aligned_cols=70 Identities=11% Similarity=0.060 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 275 AATFALGQLEAHMGN--FGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 275 ~~l~nLa~ly~~qG~--y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
-+|.|||.+-...-. ...++.+|.+|+.+..+.++..| .--+..+|.-+.+.++|.+| ...+-.|-...
T Consensus 263 mALgnLgDLEei~pt~grp~~~~Lf~~AI~~ar~~Y~~~h---vYPYtYlgG~~~R~~~~~eA------l~~wa~aa~Vi 333 (489)
T 4gq4_A 263 MALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEH---IYPYMYLAGYHCRNRNVREA------LQAWADTATVI 333 (489)
T ss_dssp HHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCC---SHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHH
T ss_pred hhhhcccCHhhcCCCCCCCCHHHHHHHHHHHHHHhcccCc---ccceeecchHHHHhhhHHHH------HHHhhhhhhhh
Confidence 367788887654332 34589999999999999999999 45678888888888987665 56666665555
Q ss_pred c
Q 013867 353 K 353 (435)
Q Consensus 353 k 353 (435)
.
T Consensus 334 ~ 334 (489)
T 4gq4_A 334 Q 334 (489)
T ss_dssp T
T ss_pred h
Confidence 4
No 267
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=64.32 E-value=12 Score=35.18 Aligned_cols=61 Identities=11% Similarity=0.031 Sum_probs=46.4
Q ss_pred cCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHH-HHHHhhhhhhhhhhHHHHHHHHHHHHHhc
Q 013867 287 MGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLAL-MFRNKAMQEHSSALLIQEGLYRRALEFLK 353 (435)
Q Consensus 287 qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~-ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k 353 (435)
.|+-+.|...|+.|++|.++-+.|.||--.-..-|.+. .|.-.++.++| -.|-++|++|.+
T Consensus 138 ~g~~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~p~~A------c~lAk~Afd~~~ 199 (227)
T 2o8p_A 138 LCSLEDSKKIHQDAFTLLCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQV------FNMLNSLGKILE 199 (227)
T ss_dssp SSCHHHHHHHHHHHHHHHHHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHH------HHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHccCHHHH------HHHHHHHHHHHH
Confidence 45578899999999999999999999975444444444 45666666665 788888888753
No 268
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=63.41 E-value=16 Score=31.92 Aligned_cols=68 Identities=7% Similarity=0.015 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCh-hHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 274 LAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHP-KVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 274 l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP-~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
..+..|+|-.+.+..+-++ -++.+.+.|..+- ++| ..-..|..||.-|.+.|+|++| ..+.++.|++-
T Consensus 39 ~~t~F~YAw~Lv~S~~~~d----i~~GI~LLe~l~~-~~~~~~RdcLYyLAvg~ykl~~Y~~A------r~y~d~lL~~e 107 (144)
T 1y8m_A 39 IQSRFNYAWGLIKSTDVND----ERLGVKILTDIYK-EAESRRRECLYYLTIGCYKLGEYSMA------KRYVDTLFEHE 107 (144)
T ss_dssp HHHHHHHHHHHHHSSSHHH----HHHHHHHHHHHHH-HCCSTHHHHHHHHHHHHHTTTCHHHH------HHHHHHHHHTC
T ss_pred HHHHHHHHHHHHcCCCHHH----HHHHHHHHHHHHh-cCccchhHHHHHHHHHHHHhhhHHHH------HHHHHHHHhcC
Confidence 4677899988888776653 2244444444443 355 6888999999999999998877 56666666654
No 269
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=62.56 E-value=13 Score=29.29 Aligned_cols=30 Identities=20% Similarity=0.090 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 013867 109 ISLLAMSTLLYESGNYVEAIEKLQKVENFK 138 (435)
Q Consensus 109 ~~l~nLa~ly~~qGky~eA~~l~~ral~i~ 138 (435)
..+...|.-....|+|++|+.+|+.+++..
T Consensus 20 i~lv~~Ave~D~~g~y~eAl~lY~~aie~l 49 (83)
T 2w2u_A 20 RKYAINAVKADKEGNAEEAITNYKKAIEVL 49 (83)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 334444556788999999999999986654
No 270
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=61.98 E-value=13 Score=30.13 Aligned_cols=34 Identities=21% Similarity=0.155 Sum_probs=26.9
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 013867 105 SWRGISLLAMSTLLYESGNYVEAIEKLQKVENFK 138 (435)
Q Consensus 105 p~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~ 138 (435)
...|-.+.-.|.-+...|+|++||+.+++|.+..
T Consensus 12 Ln~AH~~~RrAe~ll~~gkydeAIech~kAa~yL 45 (97)
T 2crb_A 12 LNLAHQQSRRADRLLAAGKYEEAISCHRKATTYL 45 (97)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hhhhhHhhhHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 3456666777888889999999999999986543
No 271
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=61.62 E-value=31 Score=39.51 Aligned_cols=102 Identities=11% Similarity=-0.046 Sum_probs=67.7
Q ss_pred CChHHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013867 57 NSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVEN 136 (435)
Q Consensus 57 ~~~~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~ 136 (435)
.+...-..++-+--++++ .|+.++|..+|+..-+...+.. .|++ .+||.|-.-|++.|+.++|.++|++-.
T Consensus 122 ~~~~~~~TynaLIdglcK----~G~leeA~~Lf~eM~~m~~kG~---~Pdv-vTYNtLI~Glck~G~~~eA~~Lf~eM~- 192 (1134)
T 3spa_A 122 QLSGQQQRLLAFFKCCLL----TDQLPLAHHLLVVHHGQRQKRK---LLTL-DMYNAVMLGWARQGAFKELVYVLFMVK- 192 (1134)
T ss_dssp CCCHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHSHHHHT---TCCH-HHHHHHHHHHHHHTCHHHHHHHHHHHH-
T ss_pred HHHhHHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHHhhcCC---CCCH-hHHHHHHHHHHhCCCHHHHHHHHHHHH-
Confidence 444444455555556654 4799999999977554432222 2444 589999999999999999999998753
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhcCCC-cchHHHH
Q 013867 137 FKNSILGVRVAAMEALAGLYLQLGQD-DTSSVVA 169 (435)
Q Consensus 137 i~e~~L~i~vaale~L~g~~~~~g~~-~~A~~~~ 169 (435)
++-+...+.|.+.+...+...|.. +.|..+.
T Consensus 193 --~~G~~PDvvTYntLI~glcK~G~~~e~A~~Ll 224 (1134)
T 3spa_A 193 --DAGLTPDLLSYAAALQCMGRQDQDAGTIERCL 224 (1134)
T ss_dssp --HTTCCCCHHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred --HcCCCCcHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 233334566777777666666764 3444333
No 272
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=61.54 E-value=59 Score=25.80 Aligned_cols=52 Identities=6% Similarity=-0.016 Sum_probs=38.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhC-CCChhHHHHHHHHHHHHHH
Q 013867 277 TFALGQLEAHMGNFGDAEEILTRTLTKTEELFG-SHHPKVGVVLTCLALMFRN 328 (435)
Q Consensus 277 l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG-~~HP~va~~L~nLA~ly~~ 328 (435)
+...|.-....|+|++|..+|.+|++.+...+- +..|..-..+..-..-|..
T Consensus 18 lv~~Ave~D~~g~y~eAl~~Y~~Aie~l~~alk~e~~~~~k~~l~~K~~eYl~ 70 (93)
T 1wfd_A 18 VLKRAVELDAESRYQQALVCYQEGIDMLLQVLKGTKESSKRCVLRTKISGYMD 70 (93)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 446667777889999999999999999988763 4556666556555555543
No 273
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=60.84 E-value=15 Score=28.76 Aligned_cols=30 Identities=13% Similarity=0.196 Sum_probs=24.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhh
Q 013867 279 ALGQLEAHMGNFGDAEEILTRTLTKTEELF 308 (435)
Q Consensus 279 nLa~ly~~qG~y~eAe~l~~rAL~I~e~~l 308 (435)
.-|.-....|+|++|..+|.+|++.....+
T Consensus 16 ~~Ave~D~~g~y~eAl~lY~~aie~l~~~l 45 (83)
T 2v6y_A 16 ILAVKADKEGKVEDAITYYKKAIEVLSQII 45 (83)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 344455678999999999999999988864
No 274
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=60.64 E-value=14 Score=28.86 Aligned_cols=30 Identities=13% Similarity=0.082 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 013867 109 ISLLAMSTLLYESGNYVEAIEKLQKVENFK 138 (435)
Q Consensus 109 ~~l~nLa~ly~~qGky~eA~~l~~ral~i~ 138 (435)
..+...|.-....|+|.+|+.+|+.+++..
T Consensus 12 i~lv~~Ave~D~~g~y~eAl~lY~~aie~l 41 (83)
T 2v6y_A 12 RKYAILAVKADKEGKVEDAITYYKKAIEVL 41 (83)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 334444556788999999999999986654
No 275
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=59.96 E-value=36 Score=34.38 Aligned_cols=86 Identities=21% Similarity=0.247 Sum_probs=57.2
Q ss_pred hhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHHHHHhhCC
Q 013867 233 TRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFG--DAEEILTRTLTKTEELFGS 310 (435)
Q Consensus 233 ~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~--eAe~l~~rAL~I~e~~lG~ 310 (435)
..+--|=..|-++-|-..-+ .| ++.... -+|.|||.|-.-.--.. .++.+|.+|+......++.
T Consensus 228 ~tDs~El~~LQq~LLWLLyD-~G-----hL~rYP--------mALgnLgDLEe~~pt~gr~~~l~L~~~AI~sa~~yY~n 293 (472)
T 3re2_A 228 TTDSIQLSQLQQELLWLLYD-MG-----HIKTYP--------MAIANLGDLEEISPTPGRPPAEELFKEAITVAKREYSD 293 (472)
T ss_dssp TEECHHHHHHHHHHHHHHHH-TT-----TTTTCH--------HHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTT
T ss_pred ccchHHHHHHHHHHHHHHHh-cc-----chhhCc--------hhhcchhhHHhcCCCCCCCCHHHHHHHHHHHHHHHhcc
Confidence 34445555666777766422 22 233111 25677877765433333 3999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHHhhhhhhh
Q 013867 311 HHPKVGVVLTCLALMFRNKAMQEHS 335 (435)
Q Consensus 311 ~HP~va~~L~nLA~ly~~qG~~e~A 335 (435)
.|-- -+..+|.-|.+.+++.+|
T Consensus 294 ~HvY---PYtylgGy~yR~~~~reA 315 (472)
T 3re2_A 294 HHIY---PYTYLGGYYYRKKKYYEA 315 (472)
T ss_dssp CCSH---HHHHHHHHHHHTTCHHHH
T ss_pred CCcc---chhhhhhhhhhcchHHHH
Confidence 9953 466788888888888776
No 276
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=56.31 E-value=19 Score=28.48 Aligned_cols=33 Identities=15% Similarity=0.099 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 013867 106 WRGISLLAMSTLLYESGNYVEAIEKLQKVENFK 138 (435)
Q Consensus 106 ~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~ 138 (435)
..|..+..-|.-+...|+|++|+.+|+.+++..
T Consensus 14 ~~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~l 46 (86)
T 4a5x_A 14 TAAATVLKRAVELDSESRYPQALVCYQEGIDLL 46 (86)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 345566677777889999999999999986654
No 277
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=54.20 E-value=22 Score=27.78 Aligned_cols=33 Identities=21% Similarity=0.219 Sum_probs=28.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCC
Q 013867 279 ALGQLEAHMGNFGDAEEILTRTLTKTEELFGSH 311 (435)
Q Consensus 279 nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~ 311 (435)
.+|.=|.-.|+|+.|..+|+.+++--++.+-.-
T Consensus 17 k~ARe~Al~GnYdta~~yY~g~~~qI~k~l~~~ 49 (78)
T 2rpa_A 17 KLAREYALLGNYDSAMVYYQGVLDQMNKYLYSV 49 (78)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhc
Confidence 678889999999999999999999877765543
No 278
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=54.15 E-value=21 Score=27.73 Aligned_cols=32 Identities=22% Similarity=0.261 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 013867 107 RGISLLAMSTLLYESGNYVEAIEKLQKVENFK 138 (435)
Q Consensus 107 ~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~ 138 (435)
.|..+...|.-....|+|++|+.+|..+++..
T Consensus 12 ~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~l 43 (85)
T 2v6x_A 12 KGIELVQKAIDLDTATQYEEAYTAYYNGLDYL 43 (85)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 44445555556778999999999999986654
No 279
>2xze_A STAM-binding protein; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=53.73 E-value=53 Score=28.41 Aligned_cols=43 Identities=16% Similarity=0.250 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchh
Q 013867 315 VGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVE 363 (435)
Q Consensus 315 va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a 363 (435)
+|..+...|.+|...|+.++| --+|-|...+.-..=|.|||..
T Consensus 39 ta~~llr~A~~y~~egd~e~A------Yily~R~~~L~~e~IpkHpdy~ 81 (146)
T 2xze_A 39 SGVEIIRMASIYSEEGNIEHA------FILYNKYITLFIEKLPKHRDYK 81 (146)
T ss_dssp HHHHHHHHHHHHHHHTCHHHH------HHHHHHHHHHHHTTGGGSTTTT
T ss_pred HHHHHHHHHHHHHHCCCHHHH------HHHHHHHHHHHHHHcccCccch
Confidence 678888889999999999887 5889999999832236788843
No 280
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=52.94 E-value=1.5e+02 Score=29.46 Aligned_cols=102 Identities=11% Similarity=0.048 Sum_probs=62.5
Q ss_pred HHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhC
Q 013867 230 LHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFG 309 (435)
Q Consensus 230 ~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG 309 (435)
.....+.++|..+.+...+-..+.......+.....+ .+..+-...-++..|...|+.++|+.+++++-.+-+..-
T Consensus 86 ~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~---~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~- 161 (393)
T 4b4t_O 86 LKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDH---GDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKD- 161 (393)
T ss_dssp HHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSS---CCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSC-
T ss_pred HhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhh---hhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccC-
Confidence 3445678888887766533221111100110100000 111233445678899999999999999999998877754
Q ss_pred CCChh-HHHHHHHHHHHHHHhhhhhhh
Q 013867 310 SHHPK-VGVVLTCLALMFRNKAMQEHS 335 (435)
Q Consensus 310 ~~HP~-va~~L~nLA~ly~~qG~~e~A 335 (435)
..+|. .+..+...+..|..+++|.++
T Consensus 162 ~~~~~v~~~~y~~~~~~~~~~~~~a~~ 188 (393)
T 4b4t_O 162 SIPLRITNSFYSTNSQYFKFKNDFNSF 188 (393)
T ss_dssp CSSSHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 44555 566666678888888888665
No 281
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=52.51 E-value=54 Score=33.75 Aligned_cols=69 Identities=13% Similarity=0.105 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHcCCHH--HHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhc
Q 013867 276 ATFALGQLEAHMGNFG--DAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLK 353 (435)
Q Consensus 276 ~l~nLa~ly~~qG~y~--eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k 353 (435)
+|.|||.|-...--.. .++.+|.+|+....+.++..|-- -+..+|.-|.+.++|.+| ...+-.|-+...
T Consensus 279 ALgnLgDLEe~~pt~gr~~~~~L~~~AI~sa~~~Y~n~HvY---PYtYlgGy~yR~~~~reA------l~~WA~Aa~Vi~ 349 (550)
T 3u84_A 279 ALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEHIY---PYMYLAGYHCRNRNVREA------LQAWADTATVIQ 349 (550)
T ss_dssp HHHHHHHHHHHSCCTTCCCHHHHHHHHHHHHHHHSTTCCSH---HHHHHHHHHHHTTCHHHH------HHHHHHHHHHHT
T ss_pred hhcchhhHhhcCCCCCCCCHHHHHHHHHHHHHHHhccCCcc---ceeecchhhhhcchHHHH------HHHHHHHHHHHH
Confidence 4667766655432222 48999999999999999999953 567788888888887766 444544444443
No 282
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=52.28 E-value=25 Score=28.06 Aligned_cols=33 Identities=15% Similarity=0.132 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 013867 106 WRGISLLAMSTLLYESGNYVEAIEKLQKVENFK 138 (435)
Q Consensus 106 ~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~ 138 (435)
..|..+...|.-....|+|++|+.+|..+++..
T Consensus 13 ~~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~l 45 (93)
T 1wfd_A 13 TAAVAVLKRAVELDAESRYQQALVCYQEGIDML 45 (93)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 344555566667788999999999999986654
No 283
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=51.71 E-value=29 Score=39.48 Aligned_cols=100 Identities=12% Similarity=-0.004 Sum_probs=65.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH-------------HHHhhCC--CChhHHHHHHHHHHHHHHhhhhhhhhhhHHH
Q 013867 277 TFALGQLEAHMGNFGDAEEILTRTLTK-------------TEELFGS--HHPKVGVVLTCLALMFRNKAMQEHSSALLIQ 341 (435)
Q Consensus 277 l~nLa~ly~~qG~y~eAe~l~~rAL~I-------------~e~~lG~--~HP~va~~L~nLA~ly~~qG~~e~A~~~~~A 341 (435)
..-+|.+|...|+|++|..+|++|-.. ....... .......-+..+..++..++-++.+
T Consensus 845 ~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~v------ 918 (1139)
T 4fhn_B 845 VYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDA------ 918 (1139)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHH------
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHH------
Confidence 467899999999999999999987221 1111100 1111234467788888888877665
Q ss_pred HHHHHHHHHHhcCCCCCCCchhh-hhccHHHHHHHhcCHHHHhhH
Q 013867 342 EGLYRRALEFLKAPPLESEGVET-KVDRTDIVALARGGYAEALSV 385 (435)
Q Consensus 342 e~Ly~rAL~I~k~~~~~hp~~a~-~l~nla~~~~a~G~yaeal~~ 385 (435)
..+-+.||+.. +.+.++.-+ ...++--.++..|+|++|...
T Consensus 919 i~fa~lAi~~~---~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~a 960 (1139)
T 4fhn_B 919 LEFSLLADASK---ETDDEDLSIAITHETLKTACAAGKFDAAHVA 960 (1139)
T ss_dssp HHHHHHHHHHC---CSCCHHHHHHHHHHHHHHHHHHCCSGGGGHH
T ss_pred HHHHHHHHHhc---cCCChhhHHHHHHHHHHHHHhhCCHHHHHHH
Confidence 78888888764 234443222 445667778888999998553
No 284
>2wm9_A Dedicator of cytokinesis protein 9; polymorphism, cell membrane, phosphoprotein, nucleotide-binding, alternative splicing; 2.20A {Homo sapiens} PDB: 2wmn_A* 2wmo_A*
Probab=51.64 E-value=1.2e+02 Score=30.52 Aligned_cols=87 Identities=11% Similarity=-0.031 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccC-----CCCCcccc-cccc-----------------hHHHHHHH
Q 013867 221 SAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFS-----DMNTLGSC-NMAL-----------------EEVALAAT 277 (435)
Q Consensus 221 ~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~-----~~~~l~~~-~~~~-----------------~~~~l~~l 277 (435)
....+++..+...|+|.||--.+..+.++..+..... +.+.+... .+.+ +...+..+
T Consensus 12 ~wl~~La~~h~~~~n~~EAa~cl~~~aaliae~L~~~~~~~~~~~~f~~i~p~~~ee~~~~~d~g~~~~~fte~~l~~ll 91 (428)
T 2wm9_A 12 TWLDSMARIHVKNGDLSEAAMCYVHVTALVAEYLTRKGVFRQGCTAFRVITPNIDEEASMMEDVGMQDVHFNEDVLMELL 91 (428)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHTTSSSCCGGGGTTTCGGGGGGC---------CCSSSHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHhhcCCCccchhccccccCCCccccCHHHHHHHH
Confidence 4667788899999999999999998777654422111 11111000 0000 11111123
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 013867 278 FALGQLEAHMGNFGDAEEILTRTLTKTEEL 307 (435)
Q Consensus 278 ~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~ 307 (435)
..-...+.+-+.|+.|..+|+..+.++|+.
T Consensus 92 ~~ai~~f~kg~~~E~ai~~~k~L~~~ye~~ 121 (428)
T 2wm9_A 92 EQCADGLWKAERYELIADIYKLIIPIYEKR 121 (428)
T ss_dssp HHHHHHHHHTTCGGGHHHHHTTTHHHHHHT
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHHHHh
Confidence 334555666677888999999999999986
No 285
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=50.98 E-value=22 Score=29.77 Aligned_cols=31 Identities=26% Similarity=0.356 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 013867 108 GISLLAMSTLLYESGNYVEAIEKLQKVENFK 138 (435)
Q Consensus 108 A~~l~nLa~ly~~qGky~eA~~l~~ral~i~ 138 (435)
|..+...|.-....|+|++|+.+|..+++..
T Consensus 18 Ai~lv~~Ave~D~ag~y~eAl~lY~~Aie~l 48 (117)
T 2cpt_A 18 AIDLASKAAQEDKAGNYEEALQLYQHAVQYF 48 (117)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 3344445556678999999999999986654
No 286
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=50.65 E-value=74 Score=24.50 Aligned_cols=52 Identities=10% Similarity=-0.017 Sum_probs=37.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhC-CCChhHHHHHHHHHHHHHH
Q 013867 277 TFALGQLEAHMGNFGDAEEILTRTLTKTEELFG-SHHPKVGVVLTCLALMFRN 328 (435)
Q Consensus 277 l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG-~~HP~va~~L~nLA~ly~~ 328 (435)
+..-|.-....|+|++|..+|.+|++.+...+- ...|..-..+.....-|..
T Consensus 16 l~~~Av~~D~~g~y~eAl~~Y~~aie~l~~a~k~e~~~~~k~~l~~k~~eYl~ 68 (85)
T 2v6x_A 16 LVQKAIDLDTATQYEEAYTAYYNGLDYLMLALKYEKNPKSKDLIRAKFTEYLN 68 (85)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 445666677789999999999999999887653 3456666666655555544
No 287
>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*
Probab=49.19 E-value=31 Score=33.14 Aligned_cols=55 Identities=13% Similarity=0.102 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHhh--CCCChhHHHHHHHHHHHHH-HhhhhhhhhhhHHHHHHHHHHHHH
Q 013867 291 GDAEEILTRTLTKTEELF--GSHHPKVGVVLTCLALMFR-NKAMQEHSSALLIQEGLYRRALEF 351 (435)
Q Consensus 291 ~eAe~l~~rAL~I~e~~l--G~~HP~va~~L~nLA~ly~-~qG~~e~A~~~~~Ae~Ly~rAL~I 351 (435)
+.|+..|++|++|.++-+ .|.||--.-..-|.+..|. -.++.++| -.+-++|.+-
T Consensus 169 e~a~~aYq~A~eiA~~~L~~~pThPiRLGLaLNfSVFyYEIln~p~~A------c~lAk~AFde 226 (268)
T 3efz_A 169 KQAVEFYEDALQRERSFLEKYPSDPLYLATILNYTILKYDLLGNPEGA------MKFANRAIQA 226 (268)
T ss_dssp HHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHTTTCCHHHH------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHcCCHHHH------HHHHHHHHhh
Confidence 568999999999999999 9999997776667777765 56776666 5666666654
No 288
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=48.21 E-value=18 Score=29.44 Aligned_cols=30 Identities=20% Similarity=0.135 Sum_probs=24.5
Q ss_pred HHHHHHHhhchHHHHHHHHHHHHHHHHhcc
Q 013867 226 YGEYLHATRNFLLAKKFYQKVIEVLAEQKD 255 (435)
Q Consensus 226 la~~~~~~G~y~eAe~ly~rAL~I~~~~~~ 255 (435)
.|+-+-..|+|++|+.++++|...+.+...
T Consensus 21 rAe~ll~~gkydeAIech~kAa~yL~eAmk 50 (97)
T 2crb_A 21 RADRLLAAGKYEEAISCHRKATTYLSEAMK 50 (97)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 356667899999999999999988766543
No 289
>1zb1_A BRO1 protein; AIP1, BRO1 domain, SNF7, trafficking, protein transport; 1.95A {Saccharomyces cerevisiae}
Probab=46.92 E-value=2e+02 Score=28.46 Aligned_cols=130 Identities=13% Similarity=0.140 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHcC------CHHHHHHHHHHHHHHHH----HhhCCC----ChhHHHHHHHHHHHHHHhhhhhhhh-----
Q 013867 276 ATFALGQLEAHMG------NFGDAEEILTRTLTKTE----ELFGSH----HPKVGVVLTCLALMFRNKAMQEHSS----- 336 (435)
Q Consensus 276 ~l~nLa~ly~~qG------~y~eAe~l~~rAL~I~e----~~lG~~----HP~va~~L~nLA~ly~~qG~~e~A~----- 336 (435)
.+.|+|.+|..+| ...+|-.+|++|--+++ .++..- .|.+..+|.+|.....+---+++|.
T Consensus 125 vLfNlaal~s~~A~~~~r~~lk~A~~~fq~AAG~f~~l~~~~~~~~~~Dls~~~l~~L~~l~LAQAQE~~~~Kai~~~~~ 204 (392)
T 1zb1_A 125 TLFNIAVIFTQIARENINEDYKNSIANLTKAFSCFEYLSENFLNSPSVDLQSENTRFLANICHAEAQELFVLKLLNDQIS 204 (392)
T ss_dssp HHHHHHHHHHHHHHHTTTSSSHHHHHHHHHHHHHHHHHHHHCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHTTSTTG
T ss_pred HHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 4456666664443 47889999999988866 444433 3446666665554433222222221
Q ss_pred ---------hhHHHHHHHHHHHHHhcCCCCCC----C-chhhhhccHHHHHHHhcCHHHHhhHh-hhhhhHHHHHHHHHH
Q 013867 337 ---------ALLIQEGLYRRALEFLKAPPLES----E-GVETKVDRTDIVALARGGYAEALSVQ-QNRKDEGERMKRWAE 401 (435)
Q Consensus 337 ---------~~~~Ae~Ly~rAL~I~k~~~~~h----p-~~a~~l~nla~~~~a~G~yaeal~~~-~~r~~eae~~~~~a~ 401 (435)
=-.++-.+|+.|++.+...+.+. + +....+..-...+.+...|-.++... .++.+|+-.+.+.|.
T Consensus 205 ~~k~~liAkLa~~~~~~Y~~a~~~l~~~~~~~~~~~~~~w~~~v~~K~~~~~A~A~y~~a~~~~e~~k~GeaIa~L~~A~ 284 (392)
T 1zb1_A 205 SKQYTLISKLSRATCNLFQKCHDFMKEIDDDVAIYGEPKWKTTVTCKLHFYKSLSAYYHGLHLEEENRVGEAIAFLDFSM 284 (392)
T ss_dssp GGCHHHHHHHHHHHHHHHHHHHHHHHSCCCTTTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHH
Confidence 01244578999999986543221 1 11222222233344444444444432 456677766666666
Q ss_pred HHhc
Q 013867 402 AAWR 405 (435)
Q Consensus 402 ~~~~ 405 (435)
..-+
T Consensus 285 ~~l~ 288 (392)
T 1zb1_A 285 QQLI 288 (392)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 290
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=45.54 E-value=1.1e+02 Score=27.23 Aligned_cols=21 Identities=29% Similarity=0.102 Sum_probs=11.4
Q ss_pred HHHHHHhhchHHHHHHHHHHH
Q 013867 227 GEYLHATRNFLLAKKFYQKVI 247 (435)
Q Consensus 227 a~~~~~~G~y~eAe~ly~rAL 247 (435)
|...-.+|+++-|+..|+++=
T Consensus 41 g~~AL~~gn~~lAe~cy~~~~ 61 (177)
T 3mkq_B 41 IQEALAQGNASLAEMIYQTQH 61 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHHcCChHHHHHHHHHhC
Confidence 334445566666666665543
No 291
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=44.00 E-value=1.5e+02 Score=27.07 Aligned_cols=70 Identities=14% Similarity=0.048 Sum_probs=50.1
Q ss_pred HHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcC----------CCCCcchHHHHHHHHHHHHHHcCCHHHHHHHH
Q 013867 62 VLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSD----------GQLAESWRGISLLAMSTLLYESGNYVEAIEKL 131 (435)
Q Consensus 62 A~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~----------lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~ 131 (435)
++++-=-++++-+ .-+|..|+..++..|+-.... +=-+..+---.++-||.++...|.-+|||..|
T Consensus 62 ~Ts~YYk~LCy~k----lKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~ 137 (242)
T 3kae_A 62 CTSKYYESLCYKK----KKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHY 137 (242)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHh
Confidence 4445445666633 237999999999999543321 11233445566889999999999999999999
Q ss_pred HHHH
Q 013867 132 QKVE 135 (435)
Q Consensus 132 ~ral 135 (435)
.++.
T Consensus 138 ~~Sf 141 (242)
T 3kae_A 138 VRSF 141 (242)
T ss_dssp HHHH
T ss_pred hhhc
Confidence 9873
No 292
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=37.99 E-value=2.2e+02 Score=25.36 Aligned_cols=44 Identities=11% Similarity=-0.059 Sum_probs=34.9
Q ss_pred hhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013867 79 DESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVE 135 (435)
Q Consensus 79 ~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral 135 (435)
.|+++.|.++.++. +.-.....||..-..+|+++=|+..|+++-
T Consensus 18 lg~l~~A~e~a~~l-------------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~ 61 (177)
T 3mkq_B 18 YGNLDAALDEAKKL-------------NDSITWERLIQEALAQGNASLAEMIYQTQH 61 (177)
T ss_dssp TTCHHHHHHHHHHH-------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHh-------------CCHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence 37899999887653 123456789999999999999999999873
No 293
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=36.48 E-value=3.9e+02 Score=27.88 Aligned_cols=93 Identities=13% Similarity=0.081 Sum_probs=58.2
Q ss_pred HHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh---
Q 013867 63 LQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKN--- 139 (435)
Q Consensus 63 ~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e--- 139 (435)
+.++|+=+...- ..+.|++|..+..++--... ....+..++-++.+|.++.-|++|.+|.+++.+|+.-..
T Consensus 231 a~l~nllLRnYL---~~~~y~qA~~lvsk~~fP~~---~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~ 304 (523)
T 4b4t_S 231 AMLINLILRDFL---NNGEVDSASDFISKLEYPHT---DVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNS 304 (523)
T ss_dssp HHHHHHHHHHHH---HSSCSTTHHHHHHHHCSCTT---TSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSS
T ss_pred HHHHHHHHHHHH---ccCcHHHHHHHHhcCcCCcc---cCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch
Confidence 344554444322 34589999999999842211 122345688899999999999999999999999865332
Q ss_pred hhHHHHHHHHHHHHHHHHhcCC
Q 013867 140 SILGVRVAAMEALAGLYLQLGQ 161 (435)
Q Consensus 140 ~~L~i~vaale~L~g~~~~~g~ 161 (435)
...|++..++.-+.-+.+-+|.
T Consensus 305 ~a~gfr~~a~K~lI~V~LLlG~ 326 (523)
T 4b4t_S 305 KSLGFLQQSNKLHCCIQLLMGD 326 (523)
T ss_dssp SCSHHHHHHHHHHHHHHHHHTC
T ss_pred hhhhHHHHHHHHHHhHHhhcCC
Confidence 2335544444333333333444
No 294
>2xze_A STAM-binding protein; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=34.50 E-value=44 Score=28.95 Aligned_cols=40 Identities=15% Similarity=0.152 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHH
Q 013867 276 ATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVG 316 (435)
Q Consensus 276 ~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va 316 (435)
.+..-|..|...|+++.|=-+|-|...+.-..+. .||+.-
T Consensus 42 ~llr~A~~y~~egd~e~AYily~R~~~L~~e~Ip-kHpdy~ 81 (146)
T 2xze_A 42 EIIRMASIYSEEGNIEHAFILYNKYITLFIEKLP-KHRDYK 81 (146)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTGG-GSTTTT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHcc-cCccch
Confidence 3456699999999999999999999999976664 599873
No 295
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=33.05 E-value=3.4e+02 Score=26.18 Aligned_cols=104 Identities=8% Similarity=-0.060 Sum_probs=56.8
Q ss_pred CCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCC---CCCCchhh
Q 013867 288 GNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPP---LESEGVET 364 (435)
Q Consensus 288 G~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~---~~hp~~a~ 364 (435)
|++.-|-.|-.-.++++++. +.|-.-.+...|..++..-..-+.. =..+.++|+.-....| .+||+.=.
T Consensus 67 ~Q~~sa~DLa~llvev~~~~---~~~~~~~~~~rl~~l~~~~p~~~~~-----r~~fi~~ai~WS~~~g~~~~Gdp~LH~ 138 (312)
T 2wpv_A 67 KQGGSGTDLIFYLLEVYDLA---EVKVDDISVARLVRLIAELDPSEPN-----LKDVITGMNNWSIKFSEYKFGDPYLHN 138 (312)
T ss_dssp TCHHHHHHHHHHHHHHHHHT---TCCCSHHHHHHHHHHHTTCCTTCTT-----HHHHHHHHHHHHHHTSSCTTCCHHHHH
T ss_pred CCcchHHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHHCCCCCch-----HHHHHHHHHHHHhhcCCCCCCCHHHHH
Confidence 44444444444444455442 2333455666677666653322111 1577888888875443 35775221
Q ss_pred hhccHHHHHHHhcCHHHHhhHhhhhh---hH--HHHHHHHHHH
Q 013867 365 KVDRTDIVALARGGYAEALSVQQNRK---DE--GERMKRWAEA 402 (435)
Q Consensus 365 ~l~nla~~~~a~G~yaeal~~~~~r~---~e--ae~~~~~a~~ 402 (435)
-+|..+..-|+|.+|...+..-. .+ ++-+..|...
T Consensus 139 ---~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~ 178 (312)
T 2wpv_A 139 ---TIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQ 178 (312)
T ss_dssp ---HHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHh
Confidence 35777888899999988653211 22 4555566554
No 296
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=32.70 E-value=2.6e+02 Score=31.62 Aligned_cols=100 Identities=9% Similarity=-0.020 Sum_probs=66.7
Q ss_pred HHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchH-----------HHHHHHHHHHHHHHHcCCHHH
Q 013867 224 LSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEE-----------VALAATFALGQLEAHMGNFGD 292 (435)
Q Consensus 224 ~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~-----------~~l~~l~nLa~ly~~qG~y~e 292 (435)
.-+|.+|-..|+|++|..+|++|-.... .+...... . .+. ....-+..+..++..+|-|+.
T Consensus 846 yl~g~~~L~~ge~~~A~~~F~kaa~~~~-----~~~~l~~~--~-~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~ 917 (1139)
T 4fhn_B 846 YLKALIYLKSKEAVKAVRCFKTTSLVLY-----SHTSQFAV--L-REFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYID 917 (1139)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTCCCSCT-----TCCCSCSS--H-HHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhhhc-----ccchhhhh--h-cccccccccccccccHHHHHHHHHHHHHHcCCHHH
Confidence 4457788899999999999998743310 01101110 0 000 000123467789999999999
Q ss_pred HHHHHHHHHHHHHHhhCCCChhHHH-HHHHHHHHHHHhhhhhhh
Q 013867 293 AEEILTRTLTKTEELFGSHHPKVGV-VLTCLALMFRNKAMQEHS 335 (435)
Q Consensus 293 Ae~l~~rAL~I~e~~lG~~HP~va~-~L~nLA~ly~~qG~~e~A 335 (435)
+..+-+.|++. .+++.+++-+ .+.++=..+-..|+|++|
T Consensus 918 vi~fa~lAi~~----~~~~~~~~~~~l~~~iFk~~L~l~~ye~A 957 (1139)
T 4fhn_B 918 ALEFSLLADAS----KETDDEDLSIAITHETLKTACAAGKFDAA 957 (1139)
T ss_dssp HHHHHHHHHHH----CCSCCHHHHHHHHHHHHHHHHHHCCSGGG
T ss_pred HHHHHHHHHHh----ccCCChhhHHHHHHHHHHHHHhhCCHHHH
Confidence 99999999864 5566666444 567787788888999998
No 297
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=31.47 E-value=46 Score=25.95 Aligned_cols=31 Identities=26% Similarity=0.208 Sum_probs=25.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhhhhH
Q 013867 112 LAMSTLLYESGNYVEAIEKLQKVENFKNSIL 142 (435)
Q Consensus 112 ~nLa~ly~~qGky~eA~~l~~ral~i~e~~L 142 (435)
..+|.=|.-.|+|+.|+.+|+.+++-..+.+
T Consensus 16 ~k~ARe~Al~GnYdta~~yY~g~~~qI~k~l 46 (78)
T 2rpa_A 16 VKLAREYALLGNYDSAMVYYQGVLDQMNKYL 46 (78)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence 4577789999999999999999976555543
No 298
>2wb7_A PT26-6P; extra chromosomal elements, unknown function; 2.60A {Thermococcus SP}
Probab=28.55 E-value=1.2e+02 Score=31.62 Aligned_cols=42 Identities=5% Similarity=-0.130 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhh
Q 013867 291 GDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQ 332 (435)
Q Consensus 291 ~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~ 332 (435)
++|.+.|+.|+.-.+++-..+.|.-.....+++..|.--|+|
T Consensus 449 ~kAi~~Y~~Ai~~L~k~~~tdd~~~v~~~~~~ak~yE~aGDy 490 (526)
T 2wb7_A 449 QGAIDEYKAAINDLQKAAQQDDYQMFLNYLNAAKKHEMAGDY 490 (526)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHhhhhhhccHH
Confidence 469999999999999999999999999999999999998886
No 299
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=27.74 E-value=1.4e+02 Score=30.09 Aligned_cols=35 Identities=3% Similarity=-0.034 Sum_probs=28.6
Q ss_pred CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013867 102 LAESWRGISLLAMSTLLYESGNYVEAIEKLQKVEN 136 (435)
Q Consensus 102 ~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~ 136 (435)
.-+++....+--||.+|..+|+|++|+...+.+++
T Consensus 184 ~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~ 218 (454)
T 3myv_A 184 NGRMNKYAARALLARIYLYHDDNRKAFDLADQLIK 218 (454)
T ss_dssp TTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCeecHHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 34666777777799999999999999998888754
No 300
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=27.73 E-value=60 Score=28.41 Aligned_cols=29 Identities=17% Similarity=0.180 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHHH
Q 013867 221 SAALSYGEYLHATRNFLLAKKFYQKVIEV 249 (435)
Q Consensus 221 ~~a~~la~~~~~~G~y~eAe~ly~rAL~I 249 (435)
.-...+|.++..+|+|.+|...|++.++-
T Consensus 102 lfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~ 130 (152)
T 4a1g_A 102 PLYIAWAGHLEAQGELQHASAVLQRGIQN 130 (152)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 34456788999999999999999999865
No 301
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=27.53 E-value=1.3e+02 Score=27.63 Aligned_cols=48 Identities=13% Similarity=0.051 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013867 82 YSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVE 135 (435)
Q Consensus 82 Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral 135 (435)
..++..+|+...... .|.. .|..|-..|..+..+|+|.+|.++|+..+
T Consensus 95 ~~~p~~if~~L~~~~---IG~~---~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI 142 (202)
T 3esl_A 95 FHESENTFKYMFNKG---IGTK---LSLFYEEFSKLLENAQFFLEAKVLLELGA 142 (202)
T ss_dssp HHHHHHHHHHHHHHT---SSTT---BHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHCC---CcHH---HHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 447777777766433 3433 68899999999999999999999999754
No 302
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=25.67 E-value=1.7e+02 Score=29.54 Aligned_cols=55 Identities=16% Similarity=0.115 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013867 82 YSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVEN 136 (435)
Q Consensus 82 Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~ 136 (435)
|+.-+.=++.|..........-++.....+--||.+|.-+|+|++|++..+.+++
T Consensus 176 y~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~ 230 (477)
T 3mcx_A 176 YEQVVSDMSNALSGLRQETSNGYINYWAAQALLSRVYLNMGEYQKAYDAATDVIK 230 (477)
T ss_dssp HHHHHHHHHHHGGGSCSSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccccCCcCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 3344444444444333222234667777777799999999999999998888754
No 303
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=25.57 E-value=1.1e+02 Score=27.05 Aligned_cols=47 Identities=6% Similarity=-0.106 Sum_probs=35.1
Q ss_pred HHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013867 84 QGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVEN 136 (435)
Q Consensus 84 eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~ 136 (435)
++..+|+...... .|. ..|..|-..|..|..+|+|.+|.++|+..+.
T Consensus 78 ~p~~if~~L~~~~---IG~---~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~ 124 (164)
T 2wvi_A 78 EPLDMYSYLHNQG---IGV---SLAQFYISWAEEYEARENFRKADAIFQEGIQ 124 (164)
T ss_dssp CHHHHHHHHHHTT---SST---TBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCC---cch---hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4666666655433 333 3688899999999999999999999997643
No 304
>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A
Probab=25.00 E-value=6.2e+02 Score=27.03 Aligned_cols=78 Identities=9% Similarity=0.049 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHcCC---------HHHHHHHHHHHHHHHHHh----h----CCC----ChhHHHHHHHHHHHHHHhhhhhh
Q 013867 276 ATFALGQLEAHMGN---------FGDAEEILTRTLTKTEEL----F----GSH----HPKVGVVLTCLALMFRNKAMQEH 334 (435)
Q Consensus 276 ~l~nLa~ly~~qG~---------y~eAe~l~~rAL~I~e~~----l----G~~----HP~va~~L~nLA~ly~~qG~~e~ 334 (435)
.+.|+|.+|..+|. ...|-.+|++|--+++-+ + ..- .|.+..+|.+|.....+---+++
T Consensus 129 vLfNlaal~s~~A~~~~r~~~~~lK~A~~~fq~AAG~f~~l~~~~l~~~~~~~~~Dls~~~l~~L~~l~LAQAQE~~~~K 208 (704)
T 2xs1_A 129 VLFNCAALASQIAAEQNLDNDEGLKIAAKHYQFASGAFLHIKETVLSALSREPTVDISPDTVGTLSLIMLAQAQEVFFLK 208 (704)
T ss_dssp HHHHHHHHHHHHHHTSCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCGGGSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCcccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777765443 567888888888776532 2 112 55677777766554433222333
Q ss_pred h-----------hhhHHHHHHHHHHHHHhc
Q 013867 335 S-----------SALLIQEGLYRRALEFLK 353 (435)
Q Consensus 335 A-----------~~~~~Ae~Ly~rAL~I~k 353 (435)
| +--.++-.+|..|++.+.
T Consensus 209 ai~~~~k~~liAkLa~~~~~~Y~~A~~~l~ 238 (704)
T 2xs1_A 209 ATRDKMKDAIIAKLANQAADYFGDAFKQCQ 238 (704)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCChhHHHHHHHHHHHHHHHHHHHHc
Confidence 2 111234567888888765
No 305
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=24.66 E-value=1.6e+02 Score=29.63 Aligned_cols=35 Identities=17% Similarity=0.194 Sum_probs=28.7
Q ss_pred CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013867 102 LAESWRGISLLAMSTLLYESGNYVEAIEKLQKVEN 136 (435)
Q Consensus 102 ~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~ 136 (435)
.-++.....+--||.+|.-+|+|++|+...+++++
T Consensus 190 ~gr~tk~aa~allArvyL~~~~~~~A~~~a~~vi~ 224 (461)
T 3kez_A 190 KGKVNRWAAMTLLSRVYLYKGEYNEALTMAENAIK 224 (461)
T ss_dssp TTSCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCeeeHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 34677777777799999999999999998888754
No 306
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=24.37 E-value=74 Score=27.82 Aligned_cols=46 Identities=15% Similarity=-0.031 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013867 84 QGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVE 135 (435)
Q Consensus 84 eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral 135 (435)
++..+|+...... .|. ..|..|-..|..+..+|+|.+|.++|+..+
T Consensus 83 dp~~if~~L~~~~---IG~---~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi 128 (152)
T 4a1g_A 83 DLHQFFEFLYNHG---IGT---LSSPLYIAWAGHLEAQGELQHASAVLQRGI 128 (152)
T ss_dssp CHHHHHHHHHTTT---TTT---TBHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCC---CcH---HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555665554322 333 368889999999999999999999999753
No 307
>1zb1_A BRO1 protein; AIP1, BRO1 domain, SNF7, trafficking, protein transport; 1.95A {Saccharomyces cerevisiae}
Probab=24.05 E-value=5.2e+02 Score=25.35 Aligned_cols=35 Identities=3% Similarity=0.005 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHHHhh------chHHHHHHHHHHHHHHHHhc
Q 013867 220 GSAALSYGEYLHATR------NFLLAKKFYQKVIEVLAEQK 254 (435)
Q Consensus 220 ~~~a~~la~~~~~~G------~y~eAe~ly~rAL~I~~~~~ 254 (435)
..+..|+|.+|..+| ....|...|++|--|++-..
T Consensus 123 a~vLfNlaal~s~~A~~~~r~~lk~A~~~fq~AAG~f~~l~ 163 (392)
T 1zb1_A 123 SCTLFNIAVIFTQIARENINEDYKNSIANLTKAFSCFEYLS 163 (392)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666654433 48899999999999987544
No 308
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=23.11 E-value=81 Score=27.90 Aligned_cols=29 Identities=28% Similarity=0.336 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHHH
Q 013867 221 SAALSYGEYLHATRNFLLAKKFYQKVIEV 249 (435)
Q Consensus 221 ~~a~~la~~~~~~G~y~eAe~ly~rAL~I 249 (435)
.-...+|.++..+|+|.+|...|+++++-
T Consensus 97 lfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~ 125 (164)
T 2wvi_A 97 QFYISWAEEYEARENFRKADAIFQEGIQQ 125 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 34456788999999999999999999875
No 309
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=22.91 E-value=52 Score=25.30 Aligned_cols=25 Identities=20% Similarity=0.339 Sum_probs=21.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Q 013867 279 ALGQLEAHMGNFGDAEEILTRTLTK 303 (435)
Q Consensus 279 nLa~ly~~qG~y~eAe~l~~rAL~I 303 (435)
.+|..+..+|++++|...|-+|+.+
T Consensus 22 ~~GE~L~~~g~~~~~~~hf~nAl~V 46 (73)
T 3ax2_A 22 QLGEELLAQGDYEKGVDHLTNAIAV 46 (73)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 5788899999999999988888764
No 310
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=22.75 E-value=80 Score=28.98 Aligned_cols=29 Identities=21% Similarity=0.135 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHHH
Q 013867 221 SAALSYGEYLHATRNFLLAKKFYQKVIEV 249 (435)
Q Consensus 221 ~~a~~la~~~~~~G~y~eAe~ly~rAL~I 249 (435)
.-...+|.++..+|+|.+|...|++.++-
T Consensus 116 lfYe~wA~~lE~~g~~~~A~~Vy~~GI~~ 144 (202)
T 3esl_A 116 LFYEEFSKLLENAQFFLEAKVLLELGAEN 144 (202)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 34456789999999999999999999865
No 311
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=22.25 E-value=81 Score=29.37 Aligned_cols=29 Identities=24% Similarity=0.291 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHHH
Q 013867 221 SAALSYGEYLHATRNFLLAKKFYQKVIEV 249 (435)
Q Consensus 221 ~~a~~la~~~~~~G~y~eAe~ly~rAL~I 249 (435)
.-...+|.++..+|+|.+|...|++.++-
T Consensus 151 lfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~ 179 (223)
T 4aez_C 151 IFYEEYANYFESRGLFQKADEVYQKGKRM 179 (223)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 34456789999999999999999999876
No 312
>2a9u_A Ubiquitin carboxyl-terminal hydrolase 8; coil-COIL, protease, SH3-binding, thiol protease, UBL conjugation pathway, structural genomics; 2.10A {Homo sapiens} SCOP: a.118.23.1
Probab=22.06 E-value=3.5e+02 Score=23.18 Aligned_cols=42 Identities=10% Similarity=-0.036 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHH
Q 013867 276 ATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVL 319 (435)
Q Consensus 276 ~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L 319 (435)
.+..-|..|...|+.+.|=-+|-|-+.+.+ .=+.||+.-..-
T Consensus 44 ~L~r~A~~y~~EGd~E~AYilymRy~~L~~--kIpkHpdyk~~~ 85 (144)
T 2a9u_A 44 KIFKTAEECRLDRDEERAYVLYMKYVTVYN--LIKKRPDFKQQQ 85 (144)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--HHTTSHHHHHTH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--HHhcCcchhhhh
Confidence 344569999999999999999999999985 458999986643
No 313
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=21.52 E-value=86 Score=25.34 Aligned_cols=26 Identities=19% Similarity=0.319 Sum_probs=22.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHH
Q 013867 279 ALGQLEAHMGNFGDAEEILTRTLTKT 304 (435)
Q Consensus 279 nLa~ly~~qG~y~eAe~l~~rAL~I~ 304 (435)
.+|..+..+|+++.|..+|-+|+.++
T Consensus 25 ~lGE~L~~~g~~e~av~Hf~nAl~Vc 50 (95)
T 1om2_A 25 QLGEELLAQGDYEKGVDHLTNAIAVC 50 (95)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHc
Confidence 58999999999999999888887654
No 314
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=20.96 E-value=82 Score=24.20 Aligned_cols=26 Identities=15% Similarity=0.339 Sum_probs=22.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhh
Q 013867 113 AMSTLLYESGNYVEAIEKLQKVENFK 138 (435)
Q Consensus 113 nLa~ly~~qGky~eA~~l~~ral~i~ 138 (435)
.+|..+..+|++++|..+|-+|+.+.
T Consensus 22 ~~GE~L~~~g~~~~~~~hf~nAl~Vc 47 (73)
T 3ax2_A 22 QLGEELLAQGDYEKGVDHLTNAIAVC 47 (73)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHc
Confidence 58889999999999999999887655
No 315
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=20.80 E-value=3.3e+02 Score=29.21 Aligned_cols=108 Identities=9% Similarity=0.063 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013867 221 SAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRT 300 (435)
Q Consensus 221 ~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rA 300 (435)
.++..-|.-....|++++|+.||..| |+|+.+..+.-++
T Consensus 444 ~i~~~aA~~ae~~G~~~dAi~LY~La-----------------------------------------~~~d~vl~lln~~ 482 (661)
T 2qx5_A 444 TITEQAARRADEDGRIYDSILLYQLA-----------------------------------------EEYDIVITLVNSL 482 (661)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHT-----------------------------------------TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHh-----------------------------------------cCHHHHHHHHHHH
Q ss_pred HHHHHHhhCCCCh----------hHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHH
Q 013867 301 LTKTEELFGSHHP----------KVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTD 370 (435)
Q Consensus 301 L~I~e~~lG~~HP----------~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla 370 (435)
|.-.-......+| +.-..-..+...|..++. |........-++...|-.+.
T Consensus 483 Ls~~l~~~~~~~~~~~~~~~~~~~l~~la~~i~~~y~~~~~-------------------~~~~~~~~~~~t~~lLl~l~ 543 (661)
T 2qx5_A 483 LSDTLSASDLDQPLVGPDDNSETNPVLLARRMASIYFDNAG-------------------ISRQIHVKNKEICMLLLNIS 543 (661)
T ss_dssp HHHHHHHSCTTSCSSCSSCCTTTCHHHHHHHHHHHHTTCHH-------------------HHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHhcccccccccccccccccccHHHHHHHHHHHHhcCch-------------------hhhhccHHHHHHHHHHHHHH
Q ss_pred HHH--HHhcCHHHHhhHhhh
Q 013867 371 IVA--LARGGYAEALSVQQN 388 (435)
Q Consensus 371 ~~~--~a~G~yaeal~~~~~ 388 (435)
.+. ...|+|.+|+....+
T Consensus 544 ~f~~~~~~g~~~~AL~~i~~ 563 (661)
T 2qx5_A 544 SIRELYFNKQWQETLSQMEL 563 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHh
No 316
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=20.73 E-value=2.4e+02 Score=24.80 Aligned_cols=60 Identities=17% Similarity=0.080 Sum_probs=42.2
Q ss_pred HHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013867 65 MINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVE 135 (435)
Q Consensus 65 m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral 135 (435)
.+++|+..-- .+|+-|+=..++...+ + +.+--+..+..+|+.|.+-|.-.+|.+++.+|-
T Consensus 93 ~vd~ALd~lv---~~~KkDqLdki~~~~l-------~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC 152 (172)
T 1wy6_A 93 HVNKALDILV---IQGKRDKLEEIGREIL-------K-NNEVSASILVAIANALRRVGDERDATTLLIEAC 152 (172)
T ss_dssp HHHHHHHHHH---HTTCHHHHHHHHHHHC----------CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---HhccHhHHHHHHHHHh-------c-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 3455555432 2567777777776543 2 333457788899999999999999999999883
No 317
>2wb7_A PT26-6P; extra chromosomal elements, unknown function; 2.60A {Thermococcus SP}
Probab=20.56 E-value=1.4e+02 Score=31.24 Aligned_cols=42 Identities=10% Similarity=0.073 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCH
Q 013867 83 SQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNY 124 (435)
Q Consensus 83 ~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky 124 (435)
++|+..|+.+++-.++.-..+.+.....+.+++..|.--|+|
T Consensus 449 ~kAi~~Y~~Ai~~L~k~~~tdd~~~v~~~~~~ak~yE~aGDy 490 (526)
T 2wb7_A 449 QGAIDEYKAAINDLQKAAQQDDYQMFLNYLNAAKKHEMAGDY 490 (526)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHhhhhhhccHH
Confidence 477788888887777776777888888888888877776655
Done!