Query 013868
Match_columns 435
No_of_seqs 188 out of 1954
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 18:36:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013868.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013868hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1fkm_A Protein (GYP1P), ORF YO 100.0 7E-52 2.4E-56 419.1 27.9 330 36-431 7-385 (396)
2 2qfz_A TBC1 domain family memb 100.0 1.2E-51 4E-56 411.2 27.8 288 35-431 24-339 (345)
3 2qq8_A TBC1 domain family memb 100.0 6.5E-50 2.2E-54 396.6 24.7 287 34-425 18-309 (334)
4 3qye_A TBC1 domain family memb 100.0 4.6E-49 1.6E-53 390.3 15.0 270 36-426 29-309 (331)
5 3hzj_A Rabgap1L, RAB GTPase-ac 100.0 2.2E-47 7.5E-52 374.9 17.5 258 37-424 5-274 (310)
6 4hl4_A TBC1 domain family memb 100.0 2.5E-46 8.5E-51 364.3 23.2 264 36-428 19-289 (292)
7 3qwl_A TBC1 domain family memb 100.0 6.7E-41 2.3E-45 324.2 23.3 256 35-430 23-288 (294)
8 2kvs_A Uncharacterized protein 36.5 26 0.0009 26.0 3.0 35 395-429 39-73 (80)
9 4g26_A Pentatricopeptide repea 21.1 2.8E+02 0.0095 27.6 8.6 54 278-331 127-180 (501)
10 3i5g_C Myosin catalytic light 17.6 1.2E+02 0.004 24.9 4.1 18 48-65 100-117 (159)
No 1
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A*
Probab=100.00 E-value=7e-52 Score=419.06 Aligned_cols=330 Identities=22% Similarity=0.341 Sum_probs=251.8
Q ss_pred CHHHHHHhcCCCCCcCHHHHHHHHhhCCCCcChhHhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccccC
Q 013868 36 SARKWQAAFTPEGQLDIGKTLSRIHRGGIHPSIRGEVWEFLLGCYEPKSTFDEREEIRQRRRLQYSAWKEECHQIFPVVG 115 (435)
Q Consensus 36 ~~~~W~~~l~~~~~i~~~k~l~~~~~~GIp~~~R~~vW~~LLG~~~~~~t~~e~~~~~~~~r~~Y~~l~~~~~~~~~~~~ 115 (435)
+.++|.+++..++.+|..+ ++.++++|||+.+|+.||++|||++|.+. .+|..++++++..|.++++++....
T Consensus 7 R~~kw~~lL~~~~~~d~~~-Lr~l~~~GIP~~lR~~vW~~LLg~~~~~~--~~~~~~l~~~~~~Y~~l~~~~~~~~---- 79 (396)
T 1fkm_A 7 RISKFDNILKDKTIINQQD-LRQISWNGIPKIHRPVVWKLLIGYLPVNT--KRQEGFLQRKRKEYRDSLKHTFSDQ---- 79 (396)
T ss_dssp HHHHHHHHHSSCSBCCHHH-HHHHHTTCCCGGGHHHHHHHHTTCSCSBG--GGHHHHHHHHHHHHHHHHHHTSSSS----
T ss_pred HHHHHHHHHcCCCCCCHHH-HHHHHHcCCCHHHHHHHHHHHHCCCCCCh--hHHHHHHHHHHHHHHHHHHHHhhcc----
Confidence 3478999998866588888 66677899999999999999999999877 4678889999999999998863100
Q ss_pred CCcccccCcccCCCCCCCCcccccccCCCCCccchhhHHhhhcCCCchHHHHHHHHHHHHHHhhhcCCCCCcccccChhh
Q 013868 116 SGKFITAPVVTEDGQPIQDPLVLQETNSGISASSSKMVKELLSHGPLDKKVIQWMLTLHQIGLDVIRTDRTLVFYEKQEN 195 (435)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qI~~Dv~RT~~~~~~f~~~~~ 195 (435)
. ....+..+||++||.||+|++++|+.+.+
T Consensus 80 ------------------~--------------------------------~~~~~~~~qI~~Dv~RT~p~~~~F~~~~~ 109 (396)
T 1fkm_A 80 ------------------H--------------------------------SRDIPTWHQIEIDIPRTNPHIPLYQFKSV 109 (396)
T ss_dssp ------------------C--------------------------------STHHHHHHHHHHHGGGSSTTSGGGGSHHH
T ss_pred ------------------C--------------------------------cccHHHHHHHHHHhhhhCCCcccccCchH
Confidence 0 00123678999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCChhhhHHHHHHhcc---------------------C-------HHHHHHHHHHHHHHh
Q 013868 196 LSKLWDILAVYAWVDRDVGYCQGMSDLCSPMIILLE---------------------N-------EADAFWCFERLMRRL 247 (435)
Q Consensus 196 ~~~L~rIL~~y~~~~p~vgY~QGm~~i~a~ll~v~~---------------------~-------E~~aF~~f~~l~~~~ 247 (435)
++.|.|||.+|+.+||++|||||||+|+++||+++. + |++|||||+++|+++
T Consensus 110 ~~~L~rIL~aya~~np~iGY~QGmn~i~a~ll~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~E~daF~~f~~lm~~~ 189 (396)
T 1fkm_A 110 QNSLQRILYLWAIRHPASGYVQGINDLVTPFFETFLTEYLPPSQIDDVEIKDPSTYMVDEQITDLEADTFWCLTKLLEQI 189 (396)
T ss_dssp HHHHHHHHHHHHHHCTTTCSCTTHHHHHHHHHHHHHGGGSCGGGGGGTTTSCGGGTCCHHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHCCCCCcccCcHHHHHHHHHHHHHhhccccccccccccchhhccchhhhhhhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998752 1 999999999999998
Q ss_pred hhccccCCChhhHHHHHHHHHHHHHhhCHHHHHHHHhCCCCccchHHHHHHHhcccCCChhhHHHHHHHHhhccCCCchh
Q 013868 248 RGNFRCTESSVGVETQLSNLASITQVIDPKLHQHLETLGGGDYLFAFRMLMVLFRREFSFCDSLYLWEMMWALEYDPHLF 327 (435)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~lL~~~dP~L~~hL~~~~i~~~~f~~~W~~tlF~~~l~~~~~lriWD~l~~~g~~~~~~ 327 (435)
..+|..+ ..++...+..+..+|+.++|+||+||++.|+.+.+|+++||+|+|+++||++.++||||.+|++|.... .
T Consensus 190 ~~~f~~~--~~~i~~~~~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rW~l~LF~~~~p~~~vlrlWD~~l~eg~~~~-~ 266 (396)
T 1fkm_A 190 TDNYIHG--QPGILRQVKNLSQLVKRIDADLYNHFQNEHVEFIQFAFRWMNCLLMREFQMGTVIRMWDTYLSETSQEV-T 266 (396)
T ss_dssp GGGSSTT--CHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCTHHHHHHHHHTTTGGGSCHHHHHHHHHHHHHHHC-----
T ss_pred HHHHhhc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHCCCccc-c
Confidence 8888654 569999999999999999999999999999999999999999999999999999999999999881100 0
Q ss_pred HHHHHHHHhhhhcccCchhhhh---hhhhhc--hhhhhhhccCCCCCC------------CCchHHHHHHHHHHHHHHHH
Q 013868 328 YLYEEAESAASTKSEGSKAKAK---SIRQCG--KYERENMKNGAKTSE------------APLPISVFLVASVLKDKSSK 390 (435)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~~~~~------------~~~~~~lfv~~ail~~~r~~ 390 (435)
..+.+.. ...++++.+.. ...+-| .++.+...+.+...+ +..+|++|+|+|||...|+.
T Consensus 267 ~~~~~~~----~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~AlL~~~r~~ 342 (396)
T 1fkm_A 267 SSYSMSS----NDIKPPVTPTEPRVASFVTPTKDFQSPTTALSNMTPNNAVEDSGKMRQSSLNEFHVFVCAAFLIKWSDQ 342 (396)
T ss_dssp ------------------------------------------------------------CHHHHHHHHHHHHHHHTHHH
T ss_pred chhhhhc----ccccCCccccccccccccccccccccccccccccccccccccchhccccchHHHHHHHHHHHHHHHHHH
Confidence 0000000 00000000000 000000 000000000000000 11368999999999999999
Q ss_pred HHHhcCChHHHHHHHhhccCC----CCHHHHHHHHHHHHHHHHHH
Q 013868 391 LLQEARGLDDVVKILNDMTGN----LDAKKACIGAMKLHKKYLKK 431 (435)
Q Consensus 391 il~~~~~~~~i~~~l~~l~~~----~d~~~il~~A~~l~~~~~~~ 431 (435)
||+ .|+++++++|+++|.. .|++.++++|..++..|...
T Consensus 343 Ll~--~df~~~l~~L~~~p~~~~~~~di~~ll~~A~~l~~~~~~~ 385 (396)
T 1fkm_A 343 LME--MDFQETITFLQNPPTKDWTETDIEMLLSEAFIWQSLYKDA 385 (396)
T ss_dssp HTT--CCHHHHHHHHTSCSCTTCCHHHHHHHHHHHHHHHHHHC--
T ss_pred HHh--cCHHHHHHHHhcCCCCCcccccHHHHHHHHHHHHHHHhcc
Confidence 998 4999999999999964 58999999999998888543
No 2
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=100.00 E-value=1.2e-51 Score=411.19 Aligned_cols=288 Identities=22% Similarity=0.385 Sum_probs=248.7
Q ss_pred CCHHHHHHhcCCCCCcCHHHHHHHHhhCCCCcChhHhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 013868 35 LSARKWQAAFTPEGQLDIGKTLSRIHRGGIHPSIRGEVWEFLLGCYEPKSTFDEREEIRQRRRLQYSAWKEECHQIFPVV 114 (435)
Q Consensus 35 l~~~~W~~~l~~~~~i~~~k~l~~~~~~GIp~~~R~~vW~~LLG~~~~~~t~~e~~~~~~~~r~~Y~~l~~~~~~~~~~~ 114 (435)
-..++|.++++.. .+|..+ ++.++++|||+.+|+.||++|||++|.+. ++|...+++++..|.++++++.....
T Consensus 24 ~r~~kw~~~l~~~-~~d~~~-Lr~l~~~GiP~~~R~~vW~~llg~~p~~~--~~~~~~l~~~~~~Y~~l~~~~~~~~~-- 97 (345)
T 2qfz_A 24 SRLDKFKQLLAGP-NTDLEE-LRRLSWSGIPKPVRPMTWKLLSGYLPANV--DRRPATLQRKQKEYFAFIEHYYDSRN-- 97 (345)
T ss_dssp CHHHHHHHHHHCS-BCCHHH-HHHHHTTCCCGGGHHHHHHHHTTSSCSBG--GGHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHcCC-CCCHHH-HHHHHHCCCCHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHHHHHHHHHHhhcCCC--
Confidence 3557999999764 478887 66677899999999999999999998876 57888889999999999988632100
Q ss_pred CCCcccccCcccCCCCCCCCcccccccCCCCCccchhhHHhhhcCCCchHHHHHHHHHHHHHHhhhcCCCCCcccccChh
Q 013868 115 GSGKFITAPVVTEDGQPIQDPLVLQETNSGISASSSKMVKELLSHGPLDKKVIQWMLTLHQIGLDVIRTDRTLVFYEKQE 194 (435)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qI~~Dv~RT~~~~~~f~~~~ 194 (435)
+ ....+..++|++||.||+|+ ++|+.+.
T Consensus 98 -------------------~--------------------------------~~~~~~~~~I~~Dv~RT~p~-~~F~~~~ 125 (345)
T 2qfz_A 98 -------------------D--------------------------------EVHQDTYRQIHIDIPRMSPE-ALILQPK 125 (345)
T ss_dssp ------------------------------------------------------CHHHHHHHHHHGGGCSCH-HHHTSHH
T ss_pred -------------------c--------------------------------cchHHHHHHHHHhCcccCCc-cccCCch
Confidence 0 00123678999999999999 9999999
Q ss_pred hHHHHHHHHHHHHHhCCCCCCCCChhhhHHHHHHhcc------------------------CHHHHHHHHHHHHHHhhhc
Q 013868 195 NLSKLWDILAVYAWVDRDVGYCQGMSDLCSPMIILLE------------------------NEADAFWCFERLMRRLRGN 250 (435)
Q Consensus 195 ~~~~L~rIL~~y~~~~p~vgY~QGm~~i~a~ll~v~~------------------------~E~~aF~~f~~l~~~~~~~ 250 (435)
.++.|.|||.+|+.+||++|||||||+|+++|++++. +|++|||||+++|+++.++
T Consensus 126 ~~~~L~rIL~~ya~~~p~vgY~QGm~~i~a~ll~v~~~~~~~~~~~~~~~~~~l~~~~~~~~E~daF~~f~~lm~~~~~~ 205 (345)
T 2qfz_A 126 VTEIFERILFIWAIRHPASGYVQGINDLVTPFFVVFICEYIEAEEVDTVDVSGVPAEVLCNIEADTYWCMSKLLDGIQDN 205 (345)
T ss_dssp HHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHGGGCC-----CCCCTTSCHHHHHHHHHHHHHHHHHHHHTSGGG
T ss_pred HHHHHHHHHHHHHHHCCCCCcccChHHHHHHHHHHHHhhhcccccccccchhhhhhhhhhhHHHHHHHHHHHHHHccccc
Confidence 9999999999999999999999999999999998874 2999999999999998877
Q ss_pred cccCCChhhHHHHHHHHHHHHHhhCHHHHHHHHhCCCCccchHHHHHHHhcccCCChhhHHHHHHHHhhccCCCchhHHH
Q 013868 251 FRCTESSVGVETQLSNLASITQVIDPKLHQHLETLGGGDYLFAFRMLMVLFRREFSFCDSLYLWEMMWALEYDPHLFYLY 330 (435)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~lL~~~dP~L~~hL~~~~i~~~~f~~~W~~tlF~~~l~~~~~lriWD~l~~~g~~~~~~~~~ 330 (435)
|..+ ..++...+..+..+|+.++|+||+||.+.|+++.+|+++||+|+|+++||++.++||||.++++|...
T Consensus 206 y~~~--~~~i~~~~~~l~~ll~~~dP~L~~hL~~~~i~~~~f~~~W~~~lF~~~~p~~~~lrlWD~~l~~g~~~------ 277 (345)
T 2qfz_A 206 YTFA--QPGIQMKVKMLEELVSRIDEQVHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQSEPDGF------ 277 (345)
T ss_dssp SSTT--CHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCHHHHHHHHHHTTTTTTSCHHHHHHHHHHHTTSTTTT------
T ss_pred cccC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHcccCCHHHHHHHHHHHHhCCCCh------
Confidence 7643 56999999999999999999999999999999999999999999999999999999999999997641
Q ss_pred HHHHHhhhhcccCchhhhhhhhhhchhhhhhhccCCCCCCCCchHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHhhccC
Q 013868 331 EEAESAASTKSEGSKAKAKSIRQCGKYERENMKNGAKTSEAPLPISVFLVASVLKDKSSKLLQEARGLDDVVKILNDMTG 410 (435)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfv~~ail~~~r~~il~~~~~~~~i~~~l~~l~~ 410 (435)
..|++|+|+|+|...|+.||+ ..|+++++++|+++|.
T Consensus 278 ------------------------------------------~~~~~~v~~AiL~~~~~~ll~-~~d~~~il~~L~~~p~ 314 (345)
T 2qfz_A 278 ------------------------------------------SHFHLYVCAAFLVRWRKEILE-EKDFQELLLFLQNLPT 314 (345)
T ss_dssp ------------------------------------------TTHHHHHHHHHHHHTHHHHHH-CCCHHHHHHHHTSCSC
T ss_pred ------------------------------------------hHHHHHHHHHHHHHHHHHHHh-hCCHHHHHHHHHcCCC
Confidence 126889999999999999998 4799999999999996
Q ss_pred CC----CHHHHHHHHHHHHHHHHHH
Q 013868 411 NL----DAKKACIGAMKLHKKYLKK 431 (435)
Q Consensus 411 ~~----d~~~il~~A~~l~~~~~~~ 431 (435)
.. |++.++++|..++.+|...
T Consensus 315 ~~~~~~di~~ll~~A~~l~~~~~~~ 339 (345)
T 2qfz_A 315 AHWDDEDISLLLAEAYRLKFAFADA 339 (345)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHC---
T ss_pred cCCchhHHHHHHHHHHHHHHHHHhh
Confidence 53 7999999999999998653
No 3
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=100.00 E-value=6.5e-50 Score=396.55 Aligned_cols=287 Identities=20% Similarity=0.294 Sum_probs=230.3
Q ss_pred CCCHHHHH-HhcCCCCCc-CHHHHHHHHhhCCCCcChhHhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 013868 34 TLSARKWQ-AAFTPEGQL-DIGKTLSRIHRGGIHPSIRGEVWEFLLGCYEPKSTFDEREEIRQRRRLQYSAWKEECHQIF 111 (435)
Q Consensus 34 ~l~~~~W~-~~l~~~~~i-~~~k~l~~~~~~GIp~~~R~~vW~~LLG~~~~~~t~~e~~~~~~~~r~~Y~~l~~~~~~~~ 111 (435)
.-...+|. +++..++.+ +..+ ++.++++|||+.+|+.||++|+|+. ...+.+.+....++.++.|..+........
T Consensus 18 ~~~~~~W~~~il~~w~~~~~~~~-lr~l~~~GIP~~lR~~vW~~llg~~-~~~~~~~y~~ll~~~~~~~~~~~~~~~~~~ 95 (334)
T 2qq8_A 18 GNAVLTWNNEILPNWETMWCSRK-VRDLWWQGIPPSVRGKVWSLAIGNE-LNITHELFDICLARAKERWRSLSTGGSEVE 95 (334)
T ss_dssp SCHHHHHHHTTGGGCC--CCCHH-HHHHHHTCCCHHHHHHHHHHHHCCT-TCCCHHHHHHHHHHHHHHC-----------
T ss_pred HHHHHHHHHHHHHhHHhccChHH-HHHHHHCCCCHHHHHHHHHHHhCCc-cccCHHHHHHHHHHHHHHHHHhccccccCc
Confidence 33457898 577665554 5555 7888899999999999999999975 455666666666666666665533211000
Q ss_pred cccCCCcccccCcccCCCCCCCCcccccccCCCCCccchhhHHhhhcCCCchHHHHHHHHHHHHHHhhhcCCCCCccccc
Q 013868 112 PVVGSGKFITAPVVTEDGQPIQDPLVLQETNSGISASSSKMVKELLSHGPLDKKVIQWMLTLHQIGLDVIRTDRTLVFYE 191 (435)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qI~~Dv~RT~~~~~~f~ 191 (435)
.++. +. ......+..++|++||.||+|++++|+
T Consensus 96 --------------~~d~-----~~----------------------------~~~~~~~~~~~I~~Dv~RT~p~~~~F~ 128 (334)
T 2qq8_A 96 --------------NEDA-----GF----------------------------SAADREASLELIKLDISRTFPNLCIFQ 128 (334)
T ss_dssp ----------------------------------------------------------CCHHHHHHHHHHTSSGGGCSSS
T ss_pred --------------cccc-----cc----------------------------ccccchhHHHHHHHHHhhcCCCchhhc
Confidence 0000 00 000011256899999999999999998
Q ss_pred Ch-hhHHHHHHHHHHHHHhCCCCCCCCChhhhHHHHHHhccCHHHHHHHHHHHHHHhh--hccccCCChhhHHHHHHHHH
Q 013868 192 KQ-ENLSKLWDILAVYAWVDRDVGYCQGMSDLCSPMIILLENEADAFWCFERLMRRLR--GNFRCTESSVGVETQLSNLA 268 (435)
Q Consensus 192 ~~-~~~~~L~rIL~~y~~~~p~vgY~QGm~~i~a~ll~v~~~E~~aF~~f~~l~~~~~--~~~~~~~~~~~~~~~~~~~~ 268 (435)
.. ++++.|.|||.+|+.+||++|||||||+|||+|++++ +|++|||||+++|++.. .+|.. ...++...+..|.
T Consensus 129 ~~~~~~~~L~rIL~aya~~~p~vgY~QGm~~iaa~lLl~~-~E~~aF~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~ 205 (334)
T 2qq8_A 129 QGGPYHDMLHSILGAYTCYRPDVGYVQGMSFIAAVLILNL-DTADAFIAFSNLLNKPCQMAFFRV--DHGLMLTYFAAFE 205 (334)
T ss_dssp TTSTTHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHS-CHHHHHHHHHHHHTSHHHHHHHSS--CCHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHHhCCCCCcchhHHHHHHHHHhcC-CHHHHHHHHHHHHHhhhHHhccCC--ChHHHHHHHHHHH
Confidence 75 6899999999999999999999999999999999988 89999999999998753 34433 3458889999999
Q ss_pred HHHHhhCHHHHHHHHhCCCCccchHHHHHHHhcccCCChhhHHHHHHHHhhccCCCchhHHHHHHHHhhhhcccCchhhh
Q 013868 269 SITQVIDPKLHQHLETLGGGDYLFAFRMLMVLFRREFSFCDSLYLWEMMWALEYDPHLFYLYEEAESAASTKSEGSKAKA 348 (435)
Q Consensus 269 ~lL~~~dP~L~~hL~~~~i~~~~f~~~W~~tlF~~~l~~~~~lriWD~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (435)
.+|+.++|+||+||.+.|+++.+|+++||+|+|+++||++.++||||+++++|..
T Consensus 206 ~ll~~~~P~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l~eg~~------------------------- 260 (334)
T 2qq8_A 206 VFFEENLPKLFAHFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRDGEE------------------------- 260 (334)
T ss_dssp HHHHHHCHHHHHHHHHTTCCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHHHHCHH-------------------------
T ss_pred HHHHHHCHHHHHHHHHcCCCccchHHHHHHHHhcccCCHHHHHHHHHHHHHcCCH-------------------------
Confidence 9999999999999999999999999999999999999999999999999998753
Q ss_pred hhhhhhchhhhhhhccCCCCCCCCchHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHhhccCCCCHHHHHHHHHHHH
Q 013868 349 KSIRQCGKYERENMKNGAKTSEAPLPISVFLVASVLKDKSSKLLQEARGLDDVVKILNDMTGNLDAKKACIGAMKLH 425 (435)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfv~~ail~~~r~~il~~~~~~~~i~~~l~~l~~~~d~~~il~~A~~l~ 425 (435)
+++++|+|||...++.|++. ++++++++|+++|..+|++.+++.|..++
T Consensus 261 --------------------------~l~~valaiL~~~~~~Ll~~--d~~~il~~L~~lp~~~d~~~l~~~a~~l~ 309 (334)
T 2qq8_A 261 --------------------------FLFRTALGILKLFEDILTKM--DFIHMAQFLTRLPEDLPAEELFASIATIQ 309 (334)
T ss_dssp --------------------------HHHHHHHHHHHHTHHHHHTC--CHHHHHHHHHSCCTTCCHHHHHHHHHHCC
T ss_pred --------------------------HHHHHHHHHHHHHHHHHhcC--CHHHHHHHHHhCCCcCCHHHHHHHHHHcc
Confidence 78899999999999999984 89999999999998999999999998764
No 4
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=100.00 E-value=4.6e-49 Score=390.33 Aligned_cols=270 Identities=23% Similarity=0.418 Sum_probs=225.7
Q ss_pred CHHHHHHhcCCCCC----cCHHHHHHHHhhCCCCcChhHhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 013868 36 SARKWQAAFTPEGQ----LDIGKTLSRIHRGGIHPSIRGEVWEFLLGCYEPKSTFDEREEIRQRRRLQYSAWKEECHQIF 111 (435)
Q Consensus 36 ~~~~W~~~l~~~~~----i~~~k~l~~~~~~GIp~~~R~~vW~~LLG~~~~~~t~~e~~~~~~~~r~~Y~~l~~~~~~~~ 111 (435)
+.++|.+++..+|+ .+..+ ++.++++|||+.+|+.||++|+|+.+...+..+ .....+..|.++.++..
T Consensus 29 ~~~~W~~~l~~~~~~~~~~~~~~-l~~~~~~GIP~~lR~~vW~~Llg~~~~~~~~~~---~~~~~~~~Y~~l~~~~~--- 101 (331)
T 3qye_A 29 VTTVWEKMLSTPGRSKIKFDMEK-MHSAVGQGVPRHHRGEIWKFLAEQFHLKHQFPS---KQQPKDVPYKELLKQLT--- 101 (331)
T ss_dssp HHHHHHHHHTCTTGGGCCCCHHH-HHHHHHTCCCGGGHHHHHHHHHHHHHHHCCCCS---SSCCCCCCHHHHTTSCC---
T ss_pred HHHHHHHHhccCCCCcccCCHHH-HHHHHHcCCCHHHHHHHHHHHhCcchhhhcchh---hhhhchHHHHHHHHhcC---
Confidence 56789999988765 35666 777778999999999999999997542111000 01112234555543210
Q ss_pred cccCCCcccccCcccCCCCCCCCcccccccCCCCCccchhhHHhhhcCCCchHHHHHHHHHHHHHHhhhcCCCCCccccc
Q 013868 112 PVVGSGKFITAPVVTEDGQPIQDPLVLQETNSGISASSSKMVKELLSHGPLDKKVIQWMLTLHQIGLDVIRTDRTLVFYE 191 (435)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qI~~Dv~RT~~~~~~f~ 191 (435)
...++|++||.||+|++++|.
T Consensus 102 -----------------------------------------------------------~~~~~I~~Dv~Rt~~~~~~f~ 122 (331)
T 3qye_A 102 -----------------------------------------------------------SQQHAILIDLGRTFPTHPYFS 122 (331)
T ss_dssp -----------------------------------------------------------TTHHHHHHHHTTSSTTSTTTC
T ss_pred -----------------------------------------------------------CchhHHHHhhcccCCCchhhc
Confidence 023689999999999999998
Q ss_pred Ch--hhHHHHHHHHHHHHHhCCCCCCCCChhhhHHHHHHhccCHHHHHHHHHHHHHHh--hhccccCCChhhHHHHHHHH
Q 013868 192 KQ--ENLSKLWDILAVYAWVDRDVGYCQGMSDLCSPMIILLENEADAFWCFERLMRRL--RGNFRCTESSVGVETQLSNL 267 (435)
Q Consensus 192 ~~--~~~~~L~rIL~~y~~~~p~vgY~QGm~~i~a~ll~v~~~E~~aF~~f~~l~~~~--~~~~~~~~~~~~~~~~~~~~ 267 (435)
.+ .+++.|.|||.+|+.+||++|||||||+|+|+|++++ +|++|||||+++|++. ...|.. +..++...+..+
T Consensus 123 ~~~~~~~~~L~~IL~ay~~~~p~igY~QGm~~i~a~ll~~~-~E~~aF~~l~~l~~~~~~~~~~~~--~~~~~~~~~~~l 199 (331)
T 3qye_A 123 AQLGAGQLSLYNILKAYSLLDQEVGYCQGLSFVAGILLLHM-SEEEAFKMLKFLMFDMGLRKQYRP--DMIILQIQMYQL 199 (331)
T ss_dssp STTCHHHHHHHHHHHHHHHHCTTTSSCTTHHHHHHHHHTTS-CHHHHHHHHHHHHTTTCGGGGGST--TCHHHHHHHHHH
T ss_pred CCCcccHHHHHHHHHHHHHHCCCccccccHHHHHHHHHHHh-hHHHHHHHHHHHHHhcCchhcCCC--ChHHHHHHHHHH
Confidence 86 7899999999999999999999999999999999988 8999999999999874 455544 456999999999
Q ss_pred HHHHHhhCHHHHHHHHhCCCCccchHHHHHHHhcccCCChhhHHHHHHHHhhccCCCchhHHHHHHHHhhhhcccCchhh
Q 013868 268 ASITQVIDPKLHQHLETLGGGDYLFAFRMLMVLFRREFSFCDSLYLWEMMWALEYDPHLFYLYEEAESAASTKSEGSKAK 347 (435)
Q Consensus 268 ~~lL~~~dP~L~~hL~~~~i~~~~f~~~W~~tlF~~~l~~~~~lriWD~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (435)
..+|+.++|+||+||.+.|+++.+|+++||+|+|+++||++.++||||+++++|..
T Consensus 200 ~~ll~~~~p~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~~g~~------------------------ 255 (331)
T 3qye_A 200 SRLLHDYHRDLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQGTE------------------------ 255 (331)
T ss_dssp HHHHHHHCHHHHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHHHHCTT------------------------
T ss_pred HHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHCCcH------------------------
Confidence 99999999999999999999999999999999999999999999999999999875
Q ss_pred hhhhhhhchhhhhhhccCCCCCCCCchHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHhhccCCC---CHHHHHHHHHHH
Q 013868 348 AKSIRQCGKYERENMKNGAKTSEAPLPISVFLVASVLKDKSSKLLQEARGLDDVVKILNDMTGNL---DAKKACIGAMKL 424 (435)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfv~~ail~~~r~~il~~~~~~~~i~~~l~~l~~~~---d~~~il~~A~~l 424 (435)
+++++|+|||..+|+.||++ .+++++++++++..+.+ |++.++++|..+
T Consensus 256 ---------------------------~l~~valaiL~~~~~~ll~~-~~~~~il~~l~~~~p~~~~~di~~li~~A~~l 307 (331)
T 3qye_A 256 ---------------------------VIFKVALSLLGSHKPLILQH-ENLETIVDFIKSTLPNLGLVQMEKTINQVFEM 307 (331)
T ss_dssp ---------------------------HHHHHHHHHHHHTHHHHHTC-CSHHHHHHHHHHTTTCCCHHHHHHHHHHHHHC
T ss_pred ---------------------------HHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHhhCCCCCHHHHHHHHHHHHhC
Confidence 79999999999999999984 69999999999965566 789999999766
Q ss_pred HH
Q 013868 425 HK 426 (435)
Q Consensus 425 ~~ 426 (435)
..
T Consensus 308 ~~ 309 (331)
T 3qye_A 308 DI 309 (331)
T ss_dssp CC
T ss_pred Cc
Confidence 53
No 5
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.2e-47 Score=374.89 Aligned_cols=258 Identities=22% Similarity=0.399 Sum_probs=220.3
Q ss_pred HHHHHHhcCCCCCc---CHHHHHHHHhhCCCCcChhHhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 013868 37 ARKWQAAFTPEGQL---DIGKTLSRIHRGGIHPSIRGEVWEFLLGCYEPKSTFDEREEIRQRRRLQYSAWKEECHQIFPV 113 (435)
Q Consensus 37 ~~~W~~~l~~~~~i---~~~k~l~~~~~~GIp~~~R~~vW~~LLG~~~~~~t~~e~~~~~~~~r~~Y~~l~~~~~~~~~~ 113 (435)
.++|.+++.+++.. +..+ ++.++++|||+.+|+.||+.|+|+.+. ...+..|..+.++..
T Consensus 5 ~~~W~~~~~~w~~~~~~~~~~-l~~l~~~GIP~~lR~~vW~~llg~~~~-----------~~~~~~Y~~l~~~~~----- 67 (310)
T 3hzj_A 5 LYSWGELLGKWHSNLGARPKG-LSTLVKSGVPEALRAEVWQLLAGCHDN-----------QAMLDRYRILITKDS----- 67 (310)
T ss_dssp -CCHHHHHHHHHTSTTSCCTT-HHHHHHHCCCGGGHHHHHHHHTTCCCC-----------HHHHHHHHHHTTSCC-----
T ss_pred HHHHHHHHHHHhhhcccCHHH-HHHHHHCCCCHHHHHHHHHHHHCCCcc-----------hhHHHHHHHHHhccC-----
Confidence 36788888755332 3344 777778999999999999999998653 123355776643210
Q ss_pred cCCCcccccCcccCCCCCCCCcccccccCCCCCccchhhHHhhhcCCCchHHHHHHHHHHHHHHhhhcCCCCCcccccCh
Q 013868 114 VGSGKFITAPVVTEDGQPIQDPLVLQETNSGISASSSKMVKELLSHGPLDKKVIQWMLTLHQIGLDVIRTDRTLVFYEKQ 193 (435)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qI~~Dv~RT~~~~~~f~~~ 193 (435)
...++|++||.||+|++++|...
T Consensus 68 ---------------------------------------------------------~~~~~I~~Dv~Rt~p~~~~f~~~ 90 (310)
T 3hzj_A 68 ---------------------------------------------------------AQESVITRDIHRTFPAHDYFKDT 90 (310)
T ss_dssp ---------------------------------------------------------TTHHHHHHHHTTSSTTSTTTSST
T ss_pred ---------------------------------------------------------CcHHHHHHHHHhhCCCchhhcCC
Confidence 02368999999999999999876
Q ss_pred --hhHHHHHHHHHHHHHhCCCCCCCCChhhhHHHHHHhccCHHHHHHHHHHHHHH--hhhccccCCChhhHHHHHHHHHH
Q 013868 194 --ENLSKLWDILAVYAWVDRDVGYCQGMSDLCSPMIILLENEADAFWCFERLMRR--LRGNFRCTESSVGVETQLSNLAS 269 (435)
Q Consensus 194 --~~~~~L~rIL~~y~~~~p~vgY~QGm~~i~a~ll~v~~~E~~aF~~f~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~ 269 (435)
.+++.|.|||.+|+.+||++|||||||+|||+|++++ +|++|||||+++|++ +...|. ++.+++...+..+..
T Consensus 91 ~~~~~~~L~~IL~ay~~~~p~igY~QGm~~iaa~lL~~~-~e~~aF~~l~~l~~~~~~~~~~~--~~~~~~~~~~~~l~~ 167 (310)
T 3hzj_A 91 GGDGQESLYKICKAYSVYDEDIGYCQGQSFLAAVLLLHM-PEEQAFCVLVKIMYDYGLRDLYR--NNFEDLHCKFYQLER 167 (310)
T ss_dssp TSHHHHHHHHHHHHHHHHCTTTCSCTTHHHHHHHHHHHS-CHHHHHHHHHHHHHTSCGGGGTH--HHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHCCCCCccCCHHHHHHHHHHhC-CHHHHHHHHHHHHhccccccccc--ccHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999 899999999999987 455554 346688889999999
Q ss_pred HHHhhCHHHHHHHHhCCCCccchHHHHHHHhcccCCChhhHHHHHHHHhhccCCCchhHHHHHHHHhhhhcccCchhhhh
Q 013868 270 ITQVIDPKLHQHLETLGGGDYLFAFRMLMVLFRREFSFCDSLYLWEMMWALEYDPHLFYLYEEAESAASTKSEGSKAKAK 349 (435)
Q Consensus 270 lL~~~dP~L~~hL~~~~i~~~~f~~~W~~tlF~~~l~~~~~lriWD~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (435)
+|+.++|+||+||.+.|+++.+|+++||+|+|+++||++.++||||+++++|..
T Consensus 168 ll~~~~p~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~~riwD~~l~~g~~-------------------------- 221 (310)
T 3hzj_A 168 LMQEQLPDLHSHFSDLNLEAHMYASQWFLTLFTAKFPLCMVFHIIDLLLCEGLN-------------------------- 221 (310)
T ss_dssp HHHHHCHHHHHHHHHHTCCGGGTSHHHHHHTTTTTSCHHHHHHHHHHHHHHCTT--------------------------
T ss_pred HHHHhChHHHHHHHHcCCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCcH--------------------------
Confidence 999999999999999999999999999999999999999999999999999865
Q ss_pred hhhhhchhhhhhhccCCCCCCCCchHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHh-hccCC----CCHHHHHHHHHHH
Q 013868 350 SIRQCGKYERENMKNGAKTSEAPLPISVFLVASVLKDKSSKLLQEARGLDDVVKILN-DMTGN----LDAKKACIGAMKL 424 (435)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lfv~~ail~~~r~~il~~~~~~~~i~~~l~-~l~~~----~d~~~il~~A~~l 424 (435)
+++++|+|||...|+.|+++ ++++++++++ ++|.. .|++.+++.|..+
T Consensus 222 -------------------------~l~~v~lail~~~~~~Ll~~--d~~~~l~~l~~~lp~~~~~~~d~~~ll~~A~~l 274 (310)
T 3hzj_A 222 -------------------------IIFHVALALLKTSKEDLLQA--DFEGALKFFRVQLPKRYRAEENARRLMEQACNI 274 (310)
T ss_dssp -------------------------HHHHHHHHHHHHTHHHHHTC--CHHHHHHHHHTHHHHTTCSHHHHHHHHHHHHHS
T ss_pred -------------------------HHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHhCcccccccccHHHHHHHHHhc
Confidence 78899999999999999994 9999999996 66643 4899999999776
No 6
>4hl4_A TBC1 domain family member 20; rabgap, RAB1B, hydrolase activator, catalytic domain, F GTPase-activating proteins, RAB GTP-binding protein, GTP HY; 2.20A {Homo sapiens} PDB: 4hlq_A*
Probab=100.00 E-value=2.5e-46 Score=364.29 Aligned_cols=264 Identities=19% Similarity=0.245 Sum_probs=220.3
Q ss_pred CHHHHHHhcCCCCCcCHHHHHHHHhhC-C-CCcChhHhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 013868 36 SARKWQAAFTPEGQLDIGKTLSRIHRG-G-IHPSIRGEVWEFLLGCYEPKSTFDEREEIRQRRRLQYSAWKEECHQIFPV 113 (435)
Q Consensus 36 ~~~~W~~~l~~~~~i~~~k~l~~~~~~-G-Ip~~~R~~vW~~LLG~~~~~~t~~e~~~~~~~~r~~Y~~l~~~~~~~~~~ 113 (435)
..+++++++.. +.+|.+++++.++.+ | +|+++|+.||+.|+|+.+...+.. |....
T Consensus 19 k~~~i~~~l~~-~~~dl~~Lr~l~~~~~g~~p~~lR~~vW~~Llg~~~~~~~~~------------~~~~~--------- 76 (292)
T 4hl4_A 19 KVAEIHQALNS-DPTDVAALRRMAISEGGLLTDEIRRKVWPKLLNVNANDPPPI------------SGKNL--------- 76 (292)
T ss_dssp HHHHHHHHHTS-SSCCHHHHHHHHHSTTCSCCHHHHHHHHHHHTTCCSCSCCSC------------CCTTH---------
T ss_pred HHHHHHHHHcC-CcccHHHHHHHHcCCCCCCChhHHHHHHHHHhCCCcccCCCc------------hhhhh---------
Confidence 34567788754 568999855555432 3 789999999999999977654211 11000
Q ss_pred cCCCcccccCcccCCCCCCCCcccccccCCCCCccchhhHHhhhcCCCchHHHHHHHHHHHHHHhhhcCCCCCcccccC-
Q 013868 114 VGSGKFITAPVVTEDGQPIQDPLVLQETNSGISASSSKMVKELLSHGPLDKKVIQWMLTLHQIGLDVIRTDRTLVFYEK- 192 (435)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qI~~Dv~RT~~~~~~f~~- 192 (435)
....+..+||++||.||+++++.|..
T Consensus 77 -----------------------------------------------------~~~~~~~~qI~~Dv~RT~~~~~~~~~~ 103 (292)
T 4hl4_A 77 -----------------------------------------------------RQMSKDYQQVLLDVRRSLRRFPPGMPE 103 (292)
T ss_dssp -----------------------------------------------------HHHCTTHHHHHHHHHTTGGGSCTTSCH
T ss_pred -----------------------------------------------------cccchhHHHHHHhhhhhhhhccCCCCH
Confidence 00112467999999999999988754
Q ss_pred ---hhhHHHHHHHHHHHHHhCCCCCCCCChhhhHHHHHHhccCHHHHHHHHHHHHHHhhhccccCCChhhHHHHHHHHHH
Q 013868 193 ---QENLSKLWDILAVYAWVDRDVGYCQGMSDLCSPMIILLENEADAFWCFERLMRRLRGNFRCTESSVGVETQLSNLAS 269 (435)
Q Consensus 193 ---~~~~~~L~rIL~~y~~~~p~vgY~QGm~~i~a~ll~v~~~E~~aF~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (435)
...++.|.|||.+|+.+||++|||||||+||++|++++ +|++|||||++++++..+.|+. ++..++...+..+..
T Consensus 104 ~~~~~~~~~L~~iL~ay~~~~p~vgY~QGm~~iaa~lLl~~-~e~~aF~~l~~l~~~~l~~~~~-~~~~~~~~~~~~l~~ 181 (292)
T 4hl4_A 104 EQREGLQEELIDIILLILERNPQLHYYQGYHDIVVTFLLVV-GERLATSLVEKLSTHHLRDFMD-PTMDNTKHILNYLMP 181 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCCCCTTHHHHHHHHHHHH-CHHHHHHHHHHHHHTTTTGGGC-SSSCTTTGGGGGHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCeeccHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHhcc-cchHHHHHHHHHHHH
Confidence 35678999999999999999999999999999999888 8999999999999975554443 345588889999999
Q ss_pred HHHhhCHHHHHHHHhCCCCccchHHHHHHHhcccCCC-hhhHHHHHHHHhhccCCCchhHHHHHHHHhhhhcccCchhhh
Q 013868 270 ITQVIDPKLHQHLETLGGGDYLFAFRMLMVLFRREFS-FCDSLYLWEMMWALEYDPHLFYLYEEAESAASTKSEGSKAKA 348 (435)
Q Consensus 270 lL~~~dP~L~~hL~~~~i~~~~f~~~W~~tlF~~~l~-~~~~lriWD~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (435)
+|+.++|+||+||++.++. .+|+++||+|+|+++++ ++.++||||+++++|+.
T Consensus 182 ll~~~~P~L~~hL~~~~i~-~~~~~~W~ltlF~~~l~~~~~~~rlWD~~l~~g~~------------------------- 235 (292)
T 4hl4_A 182 IIDQVNPELHDFMQSAEVG-TIFALSWLITWFGHVLSDFRHVVRLYDFFLACHPL------------------------- 235 (292)
T ss_dssp HHHHHCHHHHHHHC-CCCC-SGGGHHHHHTTTTTTSCCHHHHHHHHHHHHHSCTT-------------------------
T ss_pred HHHHHCHHHHHHHHHcCCC-cchHHHHHHHHHhhhcCcHHHHHHHHHHHHHcCCc-------------------------
Confidence 9999999999999999995 69999999999999995 99999999999999865
Q ss_pred hhhhhhchhhhhhhccCCCCCCCCchHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHhhccCCCCHHHHHHHHHHHHHHH
Q 013868 349 KSIRQCGKYERENMKNGAKTSEAPLPISVFLVASVLKDKSSKLLQEARGLDDVVKILNDMTGNLDAKKACIGAMKLHKKY 428 (435)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfv~~ail~~~r~~il~~~~~~~~i~~~l~~l~~~~d~~~il~~A~~l~~~~ 428 (435)
+++|+|+||+...|+.||++..+++.++.+++++|..+|++.++++|..|+++|
T Consensus 236 --------------------------~~~~v~~ail~~~~~~Ll~~~~d~~~l~~~l~~lp~~~d~~~li~~A~~l~~~~ 289 (292)
T 4hl4_A 236 --------------------------MPIYFAAVIVLYREQEVLDCDCDMASVHHLLSQIPQDLPYETLISRAGDLFVQF 289 (292)
T ss_dssp --------------------------HHHHHHHHHHHHTHHHHHTSCCSTTHHHHHHHSCCSSCCHHHHHHHHHHHHHHS
T ss_pred --------------------------HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHC
Confidence 799999999999999999965689999999999999999999999999999886
No 7
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens}
Probab=100.00 E-value=6.7e-41 Score=324.16 Aligned_cols=256 Identities=16% Similarity=0.214 Sum_probs=206.7
Q ss_pred CCHHHHHHhcCCCCCcCHHHHHHHHhhCCCCcChhHhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 013868 35 LSARKWQAAFTPEGQLDIGKTLSRIHRGGIHPSIRGEVWEFLLGCYEPKSTFDEREEIRQRRRLQYSAWKEECHQIFPVV 114 (435)
Q Consensus 35 l~~~~W~~~l~~~~~i~~~k~l~~~~~~GIp~~~R~~vW~~LLG~~~~~~t~~e~~~~~~~~r~~Y~~l~~~~~~~~~~~ 114 (435)
+..++=.+.+..+..+|..++.+.+++||||+.+|+.||++|+|++|.++ +.|..+++++|++|++++++..
T Consensus 23 ~~~k~~~~~ll~~~~~d~~~L~~~~~~g~IP~~~R~~vWklLlGylP~~~--~~~~~~l~~kr~eY~~l~~~~~------ 94 (294)
T 3qwl_A 23 VEEKKSLEILLKDDRLDTEKLCTFSQRFPLPSMYRALVWKVLLGILPPHH--ESHAKVMMYRKEQYLDVLHALK------ 94 (294)
T ss_dssp HHHHHHHHHHTTSSBCCHHHHHHHHHHSCCCHHHHHHHHHHHTTSSCSBG--GGHHHHHHHHHHHHHHHHHHHH------
T ss_pred hhHHHHHHHHhcCCCCCHHHHHHHHcCCCCCHHHHHHHHHHHcCCCCCCc--hhHHHHHHHHHHHHHHHHHhhh------
Confidence 33444334445557889999666666666999999999999999999998 5688999999999999988632
Q ss_pred CCCcccccCcccCCCCCCCCcccccccCCCCCccchhhHHhhhcCCCchHHHHHHHHHHHHHHhhhcCCCCCcccccChh
Q 013868 115 GSGKFITAPVVTEDGQPIQDPLVLQETNSGISASSSKMVKELLSHGPLDKKVIQWMLTLHQIGLDVIRTDRTLVFYEKQE 194 (435)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qI~~Dv~RT~~~~~~f~~~~ 194 (435)
.+++|+.+. |....
T Consensus 95 ---------------------------------------------------------~~r~I~~~t----P~~~v----- 108 (294)
T 3qwl_A 95 ---------------------------------------------------------VVRFVSDAT----PQAEV----- 108 (294)
T ss_dssp ---------------------------------------------------------HTTSCCTTS----CHHHH-----
T ss_pred ---------------------------------------------------------hhhhhhccC----chHHH-----
Confidence 223333322 11111
Q ss_pred hHHHHHHHHHHHHHh----------CCCCCCCCChhhhHHHHHHhccCHHHHHHHHHHHHHHhhhccccCCChhhHHHHH
Q 013868 195 NLSKLWDILAVYAWV----------DRDVGYCQGMSDLCSPMIILLENEADAFWCFERLMRRLRGNFRCTESSVGVETQL 264 (435)
Q Consensus 195 ~~~~L~rIL~~y~~~----------~p~vgY~QGm~~i~a~ll~v~~~E~~aF~~f~~l~~~~~~~~~~~~~~~~~~~~~ 264 (435)
.|..|... +++. ++|||..|++++++++.+|++|||||+++|+++.++|..+ .+|++..
T Consensus 109 -------fl~~~~~~~~~l~~~~~~~~~~-~~~~~~~Iaa~ll~l~~~E~dAFW~f~~Lm~~l~~~f~~~--~~gl~~~- 177 (294)
T 3qwl_A 109 -------YLRMYQLESGKLPRSPSFPLEP-DDEVFLAIAKAMEEMVEDSVDCYWITRRFVNQLNTKYRDS--LPQLPKA- 177 (294)
T ss_dssp -------HHHHHHHHHTCCCSSTTSCCCH-HHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTTTTTT--GGGHHHH-
T ss_pred -------HHHHHHcccccccccccCCccc-chhhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhhCCC--hhHHHHH-
Confidence 12222211 2222 4599999999999999999999999999999988777654 5577654
Q ss_pred HHHHHHHHhhCHHHHHHHHhCCCCccchHHHHHHHhcccCCChhhHHHHHHHHhhccCCCchhHHHHHHHHhhhhcccCc
Q 013868 265 SNLASITQVIDPKLHQHLETLGGGDYLFAFRMLMVLFRREFSFCDSLYLWEMMWALEYDPHLFYLYEEAESAASTKSEGS 344 (435)
Q Consensus 265 ~~~~~lL~~~dP~L~~hL~~~~i~~~~f~~~W~~tlF~~~l~~~~~lriWD~l~~~g~~~~~~~~~~~~~~~~~~~~~~~ 344 (435)
++.+|+.++|+|++||++.|+.+.+++.+||+|+|+++||++.++||||+++++|..
T Consensus 178 --l~~LL~~~dP~L~~HL~~~~i~~~~~~~rWfl~lF~~~~p~~~vlRlWD~~~~~~~~--------------------- 234 (294)
T 3qwl_A 178 --FEQYLNLEDGRLLTHLRMCSAAPKLPYDLWFKRCFAGCLPESSLQRVWDKVVSGSCK--------------------- 234 (294)
T ss_dssp --HHHHHHHHCHHHHHHHHHTTCGGGSCHHHHHTSTTTTTSCHHHHHHHHHHHHTTCST---------------------
T ss_pred --HHHHHHHHHHHHHHHHHHCCCCchhHHHHHHHHHhccCCCHHHHHHHHHHHHhCCch---------------------
Confidence 489999999999999999999887777799999999999999999999999997654
Q ss_pred hhhhhhhhhhchhhhhhhccCCCCCCCCchHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHhhccCCCCHHHHHHHHHHH
Q 013868 345 KAKAKSIRQCGKYERENMKNGAKTSEAPLPISVFLVASVLKDKSSKLLQEARGLDDVVKILNDMTGNLDAKKACIGAMKL 424 (435)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfv~~ail~~~r~~il~~~~~~~~i~~~l~~l~~~~d~~~il~~A~~l 424 (435)
+++|+|+|||..+|+.||+. ..+++++++|+++| ..|++.++++|..|
T Consensus 235 ------------------------------~l~~valAiL~~~r~~Ll~~-~~~~~il~~Lq~lp-~~di~~ll~~A~~l 282 (294)
T 3qwl_A 235 ------------------------------ILVFVAVEILLTFKIKVMAL-NSAEKITKFLENIP-QDSSDAIVSKAIDL 282 (294)
T ss_dssp ------------------------------HHHHHHHHHHHHTHHHHHHC-CSHHHHHHHHTTCC-STTHHHHHHHHHHH
T ss_pred ------------------------------HHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHcCC-cccHHHHHHHHHHH
Confidence 79999999999999999994 45599999999999 78999999999999
Q ss_pred HHHHHH
Q 013868 425 HKKYLK 430 (435)
Q Consensus 425 ~~~~~~ 430 (435)
|++|+.
T Consensus 283 ~~~~~~ 288 (294)
T 3qwl_A 283 WHKHCG 288 (294)
T ss_dssp HHHHHC
T ss_pred HHHcCC
Confidence 999975
No 8
>2kvs_A Uncharacterized protein MW0776; PSI-2, NESG, BIG target, structural genomics, protein structure initiative; NMR {Staphylococcus aureus}
Probab=36.46 E-value=26 Score=26.04 Aligned_cols=35 Identities=9% Similarity=-0.060 Sum_probs=28.0
Q ss_pred cCChHHHHHHHhhccCCCCHHHHHHHHHHHHHHHH
Q 013868 395 ARGLDDVVKILNDMTGNLDAKKACIGAMKLHKKYL 429 (435)
Q Consensus 395 ~~~~~~i~~~l~~l~~~~d~~~il~~A~~l~~~~~ 429 (435)
..++++|..+|......-.+-.++++|+.+|.+-.
T Consensus 39 ~~d~~eIs~Yle~~~~~~~~~e~vkralsly~~~~ 73 (80)
T 2kvs_A 39 EERHQVIRAYVMSNYTDHQLIETTNRAISLYMANL 73 (80)
T ss_dssp CSSSHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 46889999999986645567788899999988754
No 9
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=21.15 E-value=2.8e+02 Score=27.62 Aligned_cols=54 Identities=15% Similarity=0.027 Sum_probs=35.4
Q ss_pred HHHHHHhCCCCccchHHHHHHHhcccCCChhhHHHHHHHHhhccCCCchhHHHH
Q 013868 278 LHQHLETLGGGDYLFAFRMLMVLFRREFSFCDSLYLWEMMWALEYDPHLFYLYE 331 (435)
Q Consensus 278 L~~hL~~~~i~~~~f~~~W~~tlF~~~l~~~~~lriWD~l~~~g~~~~~~~~~~ 331 (435)
++..+.+.|+.|...++.-++..+++.=.++.+..+|+.+...|..|.......
T Consensus 127 l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~ 180 (501)
T 4g26_A 127 MVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAA 180 (501)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 444555667777777777777777776677777777777777776665443333
No 10
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=17.56 E-value=1.2e+02 Score=24.87 Aligned_cols=18 Identities=11% Similarity=0.115 Sum_probs=9.1
Q ss_pred CCcCHHHHHHHHhhCCCC
Q 013868 48 GQLDIGKTLSRIHRGGIH 65 (435)
Q Consensus 48 ~~i~~~k~l~~~~~~GIp 65 (435)
|.|+..++.+.+..-|.+
T Consensus 100 G~I~~~el~~~l~~~g~~ 117 (159)
T 3i5g_C 100 GLISSAEIRNVLKMLGER 117 (159)
T ss_dssp SEECHHHHHHHHHHSSSC
T ss_pred CcCcHHHHHHHHHHhCCC
Confidence 456666544444444543
Done!