BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013869
(435 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Methylmalonyl-Coa And Amp Bound
pdb|3NYR|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Malonyl-Coa And Amp Bound
Length = 505
Score = 209 bits (533), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 135/367 (36%), Positives = 189/367 (51%), Gaps = 37/367 (10%)
Query: 70 RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVL 129
R+ + A P+ E V+ +G AVPL + EL H++ DS S+VL+ D
Sbjct: 70 RVAVWATPAMETGVAVVAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAE--- 126
Query: 130 QNVASKSGAKFSLIPPVPNVSSETTVFDQSQ-AEKMDGQRGEDPALIVYTSGTTGKPKGV 188
+PP V +++ A DG DPAL+VYTSGTTG PKG
Sbjct: 127 -------------LPPALGALERVDVDVRARGAVPEDGADDGDPALVVYTSGTTGPPKGA 173
Query: 189 VHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSV 248
V +++ + L +AW++T D + LPL HVHGL +L PL G +V + +FS
Sbjct: 174 VIPRRALATTLDALADAWQWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLGRFST 233
Query: 249 RGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQXXXXXXXKQLRLM 308
G + + T GVPTMY R+ + A D EL RL+
Sbjct: 234 EGAARELNDGA-----------TMLFGVPTMYHRIAETLPA-DPELAKALAGA----RLL 277
Query: 309 MCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKI 368
+ GS+ALP+ ++ TG R++ERYGMTE +M S G +AGTVG PLPGV++++
Sbjct: 278 VSGSAALPVHDHERIAAATGRRVIERYGMTETLMNTSVRADGEPRAGTVGVPLPGVELRL 337
Query: 369 AEDE----SGSDAAGVGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGY 424
E++ + D VGEI V+ P+LF EY P T +FT DGFF+TGD +D DGY
Sbjct: 338 VEEDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPDGY 397
Query: 425 YIILGRK 431
I+GRK
Sbjct: 398 VRIVGRK 404
>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|B Chain B, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|C Chain C, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|D Chain D, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 202 bits (513), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 126/366 (34%), Positives = 178/366 (48%), Gaps = 22/366 (6%)
Query: 67 CGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYR 126
G R+ + S E + L T +G + +PL +Y EL + + D++ +V+ R
Sbjct: 52 VGDRVAAQTEKSVEALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIVVCDPSKR 111
Query: 127 EVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPK 186
+ + +A+K GA + P S S+A + +D A I+YTSGTTG+ K
Sbjct: 112 DGIAAIAAKVGATVETLGPDGRGSLTDAAAGASEAFATIDRGADDLAAILYTSGTTGRSK 171
Query: 187 GVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKF 246
G +H ++ + L + W +T D +H LP++H HGLF A L+A + F+PKF
Sbjct: 172 GAXLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSXIFLPKF 231
Query: 247 SVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQXXXXXXXKQLR 306
I + T GVPT YTRL+Q R
Sbjct: 232 DPDKILDLXARA------------TVLXGVPTFYTRLLQS--------PRLTKETTGHXR 271
Query: 307 LMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQV 366
L + GS+ L ++W TGH +LERYG TE SNP G R G VG LPGV
Sbjct: 272 LFISGSAPLLADTHREWSAKTGHAVLERYGXTETNXNTSNPYDGDRVPGAVGPALPGVSA 331
Query: 367 KIAEDESGSD--AAGVGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGY 424
++ + E+G + +G I VK P++FK YW+ P+ TK F DGFF TGD GK DE GY
Sbjct: 332 RVTDPETGKELPRGDIGXIEVKGPNVFKGYWRXPEKTKSEFRDDGFFITGDLGKIDERGY 391
Query: 425 YIILGR 430
ILGR
Sbjct: 392 VHILGR 397
>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 187 bits (475), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 122/366 (33%), Positives = 178/366 (48%), Gaps = 22/366 (6%)
Query: 67 CGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYR 126
G R+ + S E + L T +G + +PL +Y EL + + D++ +V+ R
Sbjct: 52 VGDRVAAQTEXSVEALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPXIVVCDPSXR 111
Query: 127 EVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPK 186
+ + +A+ GA + P S S+A + +D A I+YTSGTTG+
Sbjct: 112 DGIAAIAAXVGATVETLGPDGRGSLTDAAAGASEAFATIDRGADDLAAILYTSGTTGRSX 171
Query: 187 GVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKF 246
G + +H ++ + L + W +T D +H LP++H HGLF A L+A ++ F+P F
Sbjct: 172 GAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPXF 231
Query: 247 SVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQXXXXXXXKQLR 306
I + T GVPT YTRL+Q +R
Sbjct: 232 DPDXILDLMARA------------TVLMGVPTFYTRLLQS--------PRLTXETTGHMR 271
Query: 307 LMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQV 366
L + GS+ L ++W TGH +LERYGMTE M SNP G R G VG LPGV
Sbjct: 272 LFISGSAPLLADTHREWSAXTGHAVLERYGMTETNMNTSNPYDGDRVPGAVGPALPGVSA 331
Query: 367 KIAEDESGSDA--AGVGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGY 424
++ + E+G + +G I V P++F YW++P+ T F DGFF TGD G DE GY
Sbjct: 332 RVTDPETGXELPRGDIGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFITGDLGXIDERGY 391
Query: 425 YIILGR 430
ILGR
Sbjct: 392 VHILGR 397
>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3
Length = 503
Score = 187 bits (474), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 122/366 (33%), Positives = 178/366 (48%), Gaps = 22/366 (6%)
Query: 67 CGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYR 126
G R+ + S E + L T +G + +PL +Y EL + + D++ +V+ R
Sbjct: 52 VGDRVAAQTEXSVEALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPXIVVCDPSXR 111
Query: 127 EVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPK 186
+ + +A+ GA + P S S+A + +D A I+YTSGTTG+
Sbjct: 112 DGIAAIAAXVGATVETLGPDGRGSLTDAAAGASEAFATIDRGADDLAAILYTSGTTGRSX 171
Query: 187 GVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKF 246
G + +H ++ + L + W +T D +H LP++H HGLF A L+A ++ F+P F
Sbjct: 172 GAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPXF 231
Query: 247 SVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQXXXXXXXKQLR 306
I + T GVPT YTRL+Q +R
Sbjct: 232 DPDXILDLMARA------------TVLMGVPTFYTRLLQS--------PRLTXETTGHMR 271
Query: 307 LMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQV 366
L + GS+ L ++W TGH +LERYGMTE M SNP G R G VG LPGV
Sbjct: 272 LFISGSAPLLADTHREWSAXTGHAVLERYGMTETNMNTSNPYDGDRVPGAVGPALPGVSA 331
Query: 367 KIAEDESGSDA--AGVGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGY 424
++ + E+G + +G I V P++F YW++P+ T F DGFF TGD G DE GY
Sbjct: 332 RVTDPETGXELPRGDIGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFITGDLGXIDERGY 391
Query: 425 YIILGR 430
ILGR
Sbjct: 392 VHILGR 397
>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|B Chain B, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|C Chain C, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
Length = 506
Score = 187 bits (474), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 122/366 (33%), Positives = 178/366 (48%), Gaps = 22/366 (6%)
Query: 67 CGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYR 126
G R+ + S E + L T +G + +PL +Y EL + + D++ +V+ R
Sbjct: 52 VGDRVAAQTEXSVEALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPXIVVCDPSXR 111
Query: 127 EVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPK 186
+ + +A+ GA + P S S+A + +D A I+YTSGTTG+
Sbjct: 112 DGIAAIAAXVGATVETLGPDGRGSLTDAAAGASEAFATIDRGADDLAAILYTSGTTGRSX 171
Query: 187 GVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKF 246
G + +H ++ + L + W +T D +H LP++H HGLF A L+A ++ F+P F
Sbjct: 172 GAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPXF 231
Query: 247 SVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQXXXXXXXKQLR 306
I + T GVPT YTRL+Q +R
Sbjct: 232 DPDXILDLMARA------------TVLMGVPTFYTRLLQS--------PRLTXETTGHMR 271
Query: 307 LMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQV 366
L + GS+ L ++W TGH +LERYGMTE M SNP G R G VG LPGV
Sbjct: 272 LFISGSAPLLADTHREWSAXTGHAVLERYGMTETNMNTSNPYDGDRVPGAVGPALPGVSA 331
Query: 367 KIAEDESGSDA--AGVGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGY 424
++ + E+G + +G I V P++F YW++P+ T F DGFF TGD G DE GY
Sbjct: 332 RVTDPETGXELPRGDIGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFITGDLGXIDERGY 391
Query: 425 YIILGR 430
ILGR
Sbjct: 392 VHILGR 397
>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase
Length = 517
Score = 123 bits (308), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 101/383 (26%), Positives = 166/383 (43%), Gaps = 59/383 (15%)
Query: 68 GARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYRE 127
G R+ ++ S EF G G +AVP+ E+ ++ DS +V+
Sbjct: 68 GDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAP 127
Query: 128 VLQNVASKSGAKFSLIPPVPNVSSETTVFD----QSQAEKMDGQRGEDPAL--------- 174
V+ + +++ PP TV D S AE++ ++PA+
Sbjct: 128 VIDAIRAQAD------PP-------GTVTDWIGADSLAERLRSAAADEPAVECGGDDNLF 174
Query: 175 IVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPL 234
I+YTSGTTG PKGVVHTH+S+ + + D+ L LP+ HV L + + +
Sbjct: 175 IMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAALTTVIFSAM 234
Query: 235 YAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTM--YTRLIQGYEAMDT 292
G T+ MP+F +W E E + VP + + R + + +D
Sbjct: 235 R-GVTLISMPQFDATKVWSLIVE----------ERVCIGGAVPAILNFMRQVPEFAELDA 283
Query: 293 ELQXXXXXXXKQLRLMMCGSSALPLPVMQQW-----ETITGHRLLERYGMTEFVMAISNP 347
R + G + +P +++ + E + G+ L E G +++
Sbjct: 284 ----------PDFRYFITGGAPMPEALIKIYAAKNIEVVQGYALTESCGGGTLLLSED-- 331
Query: 348 LRGARKAGTVGNPLPGVQVKIAEDESGSDAAGVGEICVKSPSLFKEYWKLPKVTKDSFTA 407
RKAG+ G V + D+ G GE+ +KS L KEYW P+ T+D+F
Sbjct: 332 --ALRKAGSAGRATMFTDVAVRGDDGVIREHGEGEVVIKSDILLKEYWNRPEATRDAFD- 388
Query: 408 DGFFKTGDTGKQDEDGYYIILGR 430
+G+F+TGD G+ D++GY I R
Sbjct: 389 NGWFRTGDIGEIDDEGYLYIKDR 411
>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis
pdb|3T5C|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
pdb|3T5C|B Chain B, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
Length = 396
Score = 122 bits (306), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 100/380 (26%), Positives = 165/380 (43%), Gaps = 59/380 (15%)
Query: 68 GARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYRE 127
G R+ ++ S EF G G +AVP+ E+ ++ DS +V+
Sbjct: 54 GDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAP 113
Query: 128 VLQNVASKSGAKFSLIPPVPNVSSETTVFD----QSQAEKMDGQRGEDPAL--------- 174
V+ + +++ PP TV D S AE++ ++PA+
Sbjct: 114 VIDAIRAQAD------PP-------GTVTDWIGADSLAERLRSAAADEPAVECGGDDNLF 160
Query: 175 IVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPL 234
I+YTSGTTG PKGVVHTH+S+ + + D+ L LP+ HV L + + +
Sbjct: 161 IMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAALTTVIFSAM 220
Query: 235 YAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTM--YTRLIQGYEAMDT 292
G T+ MP+F +W E E + VP + + R + + +D
Sbjct: 221 R-GVTLISMPQFDATKVWSLIVE----------ERVCIGGAVPAILNFMRQVPEFAELDA 269
Query: 293 ELQXXXXXXXKQLRLMMCGSSALPLPVMQQW-----ETITGHRLLERYGMTEFVMAISNP 347
R + G + +P +++ + E + G+ L E G +++
Sbjct: 270 ----------PDFRYFITGGAPMPEALIKIYAAKNIEVVQGYALTESCGGGTLLLSED-- 317
Query: 348 LRGARKAGTVGNPLPGVQVKIAEDESGSDAAGVGEICVKSPSLFKEYWKLPKVTKDSFTA 407
RKAG+ G V + D+ G GE+ +KS L KEYW P+ T+D+F
Sbjct: 318 --ALRKAGSAGRATMFTDVAVRGDDGVIREHGEGEVVIKSDILLKEYWNRPEATRDAFD- 374
Query: 408 DGFFKTGDTGKQDEDGYYII 427
+G+F+TGD G+ D++GY I
Sbjct: 375 NGWFRTGDIGEIDDEGYLYI 394
>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1ULT|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
Length = 541
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 82/294 (27%), Positives = 139/294 (47%), Gaps = 39/294 (13%)
Query: 156 FDQSQAEKMDGQRGEDPAL--IVYTSGTTGKPKGVVHTHKSI--DAQVQMLTEAWEYTSA 211
++++ E+ D R + A + YT+GTTG PKGVV++H+++ + L + +
Sbjct: 160 YEEALGEEADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEK 219
Query: 212 DQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAIT 271
D L +P+ HV+ A L V P+ + + + GE +T
Sbjct: 220 DVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFD----------GEGVT 269
Query: 272 AFTGVPTMYTRLIQGYEAMDTELQXXXXXXXKQLRLMMCGSSALPLPVMQQWETITGHRL 331
GVPT++ L E+ L K LR ++ G SA P ++ ++E + G +
Sbjct: 270 FTAGVPTVWLALADYLESTGHRL--------KTLRRLVVGGSAAPRSLIARFERM-GVEV 320
Query: 332 LERYGMTE--------FVMA----ISNPLRGARKAGTVGNPLPGVQVKIAEDESG---SD 376
+ YG+TE FV + +S + KA T G P+P V++++A++E D
Sbjct: 321 RQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKT-GLPIPLVRLRVADEEGRPVPKD 379
Query: 377 AAGVGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGR 430
+GE+ +K P + Y+ + T+ + T DGFF+TGD DE+GY I R
Sbjct: 380 GKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDR 433
>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
pdb|2V7B|B Chain B, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
Length = 529
Score = 91.3 bits (225), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 92/373 (24%), Positives = 153/373 (41%), Gaps = 32/373 (8%)
Query: 70 RIGIVAKPSFEFVAGVLGTWFSGCI-AVPLALSYPESELLHVMHDSDISMVLSTEDYREV 128
RI +V + LG ++G + V L P + + H +++ S + V
Sbjct: 75 RILLVMLDTVALPVAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNV 134
Query: 129 LQNVASKSGAKFSLIPPVPNVSSETT------VFDQSQAEKMDGQRG-EDPALIVYTSGT 181
Q + S LI P S + D + G +D A +Y+SG+
Sbjct: 135 TQALESAEHDGCQLIVSQPRESEPRLAPLFEELIDAAAPAAKAAATGCDDIAFWLYSSGS 194
Query: 182 TGKPKGVVHTHKSIDAQVQMLTEA-WEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATV 240
TGKPKG VHTH ++ ++ + D L +GL N L PL GAT
Sbjct: 195 TGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFSAAKLFFAYGLGNGLTFPLSVGATA 254
Query: 241 EFMP-KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQXXXX 299
M + + I+ R E P T F GVPT+Y ++
Sbjct: 255 ILMAERPTADAIFARLVEHRP----------TVFYGVPTLYANMLVS--------PNLPA 296
Query: 300 XXXKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGN 359
+R+ ALP + +++ G +L+ G TE + + GA + GT G
Sbjct: 297 RADVAIRICTSAGEALPREIGERFTAHFGCEILDGIGSTEMLHIFLSNRAGAVEYGTTGR 356
Query: 360 PLPGVQVKIAEDESGSDAAG--VGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTG 417
P+PG ++++ DE+G VG++ +K PS YW + ++ +F + + ++GD
Sbjct: 357 PVPGYEIEL-RDEAGHAVPDGEVGDLYIKGPSAAVMYWNNREKSRATFLGE-WIRSGDKY 414
Query: 418 KQDEDGYYIILGR 430
+ +G Y+ GR
Sbjct: 415 CRLPNGCYVYAGR 427
>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3A9V|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3NI2|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate:coa Ligase
Length = 536
Score = 88.6 bits (218), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 95/359 (26%), Positives = 158/359 (44%), Gaps = 50/359 (13%)
Query: 78 SFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSG 137
S EFV LG G I +EL S ++++ Y E +++ A +S
Sbjct: 84 SPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARESD 143
Query: 138 AKFSLIPPVPNVS---SETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHK- 193
K + P+ SE T D+++A ++D +D + Y+SGTTG PKGV+ THK
Sbjct: 144 VKVMCVDSAPDGCLHFSELTQADENEAPQVD-ISPDDVVALPYSSGTTGLPKGVMLTHKG 202
Query: 194 ---SIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKF---S 247
S+ QV + S D L LP+ H++ L + +L L GA + MPKF S
Sbjct: 203 LITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMPKFEIGS 262
Query: 248 VRGIWQRWRESY-PVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQXXXXXXXKQLR 306
+ G+ ++++ S PV VP + + + + +L LR
Sbjct: 263 LLGLIEKYKVSIAPV--------------VPPVMMSIAKSPDLDKHDLS--------SLR 300
Query: 307 LMMCGSSALPLPVMQQWE-TITGH----RLLERYGMTEFVMAISNPLRGAR-----KAGT 356
++ G + P+ ++ E T+ RL + YGMTE ++ L A+ K G
Sbjct: 301 MIKSGGA----PLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGA 356
Query: 357 VGNPLPGVQVKIAEDESGSDAA--GVGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKT 413
G + ++KI + E+G+ GEIC++ + K Y P+ T + +G+ T
Sbjct: 357 CGTVVRNAEMKIVDPETGASLPRNQPGEICIRGDQIMKGYLNDPEATSRTIDKEGWLHT 415
>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
pdb|3IVR|B Chain B, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
Length = 509
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 103/387 (26%), Positives = 159/387 (41%), Gaps = 70/387 (18%)
Query: 68 GARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYRE 127
G R+ I+++ E + + G I +P+ E+ V+ D S+V++ DYR+
Sbjct: 56 GDRVAILSQNCSEMIELIGAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRD 115
Query: 128 VLQNV-ASKSGAKFSL--------IPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYT 178
++ V S G K + P +++S+T F + DG +I++T
Sbjct: 116 IVAGVLPSLGGVKKAYAIGDGSGPFAPFKDLASDTP-FSAPEFGAADG------FVIIHT 168
Query: 179 SGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGA 238
+ G+P+G + + ++ L +AW T AD L LPL HV GL L GA
Sbjct: 169 AAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLGLMLTLQQAGGA 228
Query: 239 TV---EFMPKFSVRGIWQR----WRESYPVNGNRAGEA-------ITAFTGVPTMYTRLI 284
+V +F P + R I E P+ GN +A + A TG+ T T I
Sbjct: 229 SVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQAAPAQLASLRAVTGLDTPET--I 286
Query: 285 QGYEAMDTELQXXXXXXXKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAI 344
+ +EA C P W T E G++ F
Sbjct: 287 ERFEA-------------------TC-------PNATFWATFGQS---ETSGLSTFA--- 314
Query: 345 SNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSLFKEYWKLPKVTKD 403
P R K + G PL V + + E G VGEI ++ P++FK YW T+
Sbjct: 315 --PYRDRPK--SAGRPLFWRTVAVVDAEDRPLPPGEVGEIVLRGPTVFKGYWNNAAATQH 370
Query: 404 SFTADGFFKTGDTGKQDEDGYYIILGR 430
+F +G+ TGD G+ D DGY GR
Sbjct: 371 AFR-NGWHHTGDMGRFDADGYLFYAGR 396
>pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
pdb|1AMU|B Chain B, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
Length = 563
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 88/381 (23%), Positives = 154/381 (40%), Gaps = 55/381 (14%)
Query: 66 GCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDY 125
G +GI+ + S + G+L +G VP+ + YP+ + +++ DS M+L+ +
Sbjct: 87 GKDTLVGIMMEKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHL 146
Query: 126 REVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDG------QRGEDPALIVYTS 179
++ N+ + + +F++ + +G + D A ++YTS
Sbjct: 147 VHLIHNI---------------QFNGQVEIFEEDTIKIREGTNLHVPSKSTDLAYVIYTS 191
Query: 180 GTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGAT 239
GTTG PKG + HK I + T D+ + ++ +A L GA+
Sbjct: 192 GTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWEMFMA-LLTGAS 250
Query: 240 VEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQXXXX 299
+ + K ++ + E Y +N + IT T PT L D E
Sbjct: 251 LYIILKDTINDFVK--FEQY-IN----QKEITVITLPPTYVVHL-------DPERILSIQ 296
Query: 300 XXXKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAG---T 356
L+ GS+ P V + E +T + YG TE + + + G
Sbjct: 297 T------LITAGSATSPSLVNKWKEKVT---YINAYGPTETTICATTWVATKETIGHSVP 347
Query: 357 VGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSLFKEYWKLPKVTKDSFTADGF----- 410
+G P+ Q+ I ++ + G GE+C+ L + YWK P++T F + F
Sbjct: 348 IGAPIQNTQIYIVDENLQLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEK 407
Query: 411 -FKTGDTGKQDEDGYYIILGR 430
+KTGD + DG LGR
Sbjct: 408 LYKTGDQARWLSDGNIEYLGR 428
>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
pdb|4G36|B Chain B, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
Length = 555
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 100/393 (25%), Positives = 161/393 (40%), Gaps = 64/393 (16%)
Query: 70 RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVL 129
RI + ++ S +F VLG F G P Y E ELL+ M+ S ++V ++ + +
Sbjct: 82 RIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKI 141
Query: 130 QNVASKSGAKFSLIPPVPNVSSETTV-----------------FDQSQAEKMDGQRGEDP 172
NV K +I + + S+T F++ R +
Sbjct: 142 LNVQKK----LPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTI 197
Query: 173 ALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQF------LHCLPLHHVHGL 226
ALI+ +SG+TG PKGV H++ + + A + +Q L +P HH G+
Sbjct: 198 ALIMNSSGSTGLPKGVALPHRTACVR---FSHARDPIFGNQIIPDTAILSVVPFHHGFGM 254
Query: 227 FNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYT----- 281
F L L G V M +F ++ R + Y I + VPT+++
Sbjct: 255 FTTL-GYLICGFRVVLMYRFE-EELFLRSLQDY---------KIQSALLVPTLFSFFAKS 303
Query: 282 RLIQGYEAMDT-ELQXXXXXXXKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEF 340
LI Y+ + E+ K++ + LP G R + YG+TE
Sbjct: 304 TLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLP-----------GIR--QGYGLTET 350
Query: 341 VMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAGV---GEICVKSPSLFKEYWKL 397
AI G K G VG +P + K+ + ++G GV GE+CV+ P + Y
Sbjct: 351 TSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGK-TLGVNQRGELCVRGPMIMSGYVNN 409
Query: 398 PKVTKDSFTADGFFKTGDTGKQDEDGYYIILGR 430
P+ T DG+ +GD DED ++ I+ R
Sbjct: 410 PEATNALIDKDGWLHSGDIAYWDEDEHFFIVDR 442
>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form)
pdb|3IER|A Chain A, Firefly Luciferase Apo Structure (P41 Form) With Peg 400
Bound
pdb|3IES|A Chain A, Firefly Luciferase Inhibitor Complex
Length = 551
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 98/388 (25%), Positives = 158/388 (40%), Gaps = 54/388 (13%)
Query: 70 RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVL 129
RI + ++ S +F VLG F G P Y E ELL+ M+ S ++V ++ + +
Sbjct: 77 RIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKI 136
Query: 130 QNVASKSGAKFSLIPPVPNVSSETTV-----------------FDQSQAEKMDGQRGEDP 172
NV K +I + + S+T F++ R +
Sbjct: 137 LNVQKK----LPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTI 192
Query: 173 ALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQF------LHCLPLHHVHGL 226
ALI+ +SG+TG PKGV H++ + + A + +Q L +P HH G+
Sbjct: 193 ALIMNSSGSTGLPKGVALPHRTACVR---FSHARDPIFGNQIIPDTAILSVVPFHHGFGM 249
Query: 227 FNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQG 286
F L L G V M +F ++ R + Y + + +F T LI
Sbjct: 250 FTTL-GYLICGFRVVLMYRFE-EELFLRSLQDYKIQSALLVPTLFSFFAKST----LIDK 303
Query: 287 YEAMDT-ELQXXXXXXXKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAIS 345
Y+ + E+ K++ + LP G R + YG+TE AI
Sbjct: 304 YDLSNLHEIASGGAPLSKEVGEAVAKRFHLP-----------GIR--QGYGLTETTSAIL 350
Query: 346 NPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAGV---GEICVKSPSLFKEYWKLPKVTK 402
G K G VG +P + K+ + ++G GV GE+CV+ P + Y P+ T
Sbjct: 351 ITPEGDDKPGAVGKVVPFFEAKVVDLDTGK-TLGVNQRGELCVRGPMIMSGYVNNPEATN 409
Query: 403 DSFTADGFFKTGDTGKQDEDGYYIILGR 430
DG+ +GD DED ++ I+ R
Sbjct: 410 ALIDKDGWLHSGDIAYWDEDEHFFIVDR 437
>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform
pdb|1LCI|A Chain A, Firefly Luciferase
pdb|3RIX|A Chain A, 1.7a Resolution Structure Of A Firefly
Luciferase-Aspulvinone J Inhibitor Complex
pdb|4E5D|A Chain A, 2.2a Resolution Structure Of A Firefly
Luciferase-Benzothiazole Inhibitor Complex
Length = 550
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 98/388 (25%), Positives = 158/388 (40%), Gaps = 54/388 (13%)
Query: 70 RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVL 129
RI + ++ S +F VLG F G P Y E ELL+ M+ S ++V ++ + +
Sbjct: 77 RIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKI 136
Query: 130 QNVASKSGAKFSLIPPVPNVSSETTV-----------------FDQSQAEKMDGQRGEDP 172
NV K +I + + S+T F++ R +
Sbjct: 137 LNVQKK----LPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTI 192
Query: 173 ALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQF------LHCLPLHHVHGL 226
ALI+ +SG+TG PKGV H++ + + A + +Q L +P HH G+
Sbjct: 193 ALIMNSSGSTGLPKGVALPHRTACVR---FSHARDPIFGNQIIPDTAILSVVPFHHGFGM 249
Query: 227 FNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQG 286
F L L G V M +F ++ R + Y + + +F T LI
Sbjct: 250 FTTL-GYLICGFRVVLMYRFE-EELFLRSLQDYKIQSALLVPTLFSFFAKST----LIDK 303
Query: 287 YEAMDT-ELQXXXXXXXKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAIS 345
Y+ + E+ K++ + LP G R + YG+TE AI
Sbjct: 304 YDLSNLHEIASGGAPLSKEVGEAVAKRFHLP-----------GIR--QGYGLTETTSAIL 350
Query: 346 NPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAGV---GEICVKSPSLFKEYWKLPKVTK 402
G K G VG +P + K+ + ++G GV GE+CV+ P + Y P+ T
Sbjct: 351 ITPEGDDKPGAVGKVVPFFEAKVVDLDTGK-TLGVNQRGELCVRGPMIMSGYVNNPEATN 409
Query: 403 DSFTADGFFKTGDTGKQDEDGYYIILGR 430
DG+ +GD DED ++ I+ R
Sbjct: 410 ALIDKDGWLHSGDIAYWDEDEHFFIVDR 437
>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
pdb|4G37|B Chain B, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
Length = 555
Score = 85.1 bits (209), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 97/388 (25%), Positives = 160/388 (41%), Gaps = 54/388 (13%)
Query: 70 RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVL 129
RI + ++ S +F VLG F G P Y E ELL+ M+ S ++V ++ + +
Sbjct: 82 RIVVSSENSLQFFMPVLGALFIGVAVAPANDCYNERELLNSMNISQPTVVFVSKKGLQKI 141
Query: 130 QNVASKSGAKFSLIPPVPNVSSETTV-----------------FDQSQAEKMDGQRGEDP 172
NV K +I + + S+T F++ R +
Sbjct: 142 LNVQKK----LPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTI 197
Query: 173 ALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQF------LHCLPLHHVHGL 226
ALI+ +SG+TG PKGV H+++ + + A + +Q L +P HH G+
Sbjct: 198 ALIMNSSGSTGLPKGVALPHRALAVR---FSHARDPIFGNQIAPDTAILSVVPFHHGFGM 254
Query: 227 FNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQG 286
F L L +G V M +F ++ R + Y + + +F T LI
Sbjct: 255 FTTL-GYLISGFRVVLMYRFE-EELFLRSLQDYKIQSALLVPTLFSFLAKST----LIDK 308
Query: 287 YEAMDT-ELQXXXXXXXKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAIS 345
Y+ + E+ K++ + LP G R + YG+TE AI
Sbjct: 309 YDLSNLHEIASGGAPLSKEVGEAVAKRFHLP-----------GIR--QGYGLTETTSAIL 355
Query: 346 NPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAGV---GEICVKSPSLFKEYWKLPKVTK 402
+G K G VG +P + K+ + ++G GV GE+ V+ P + Y P+ T
Sbjct: 356 ITPKGDDKPGAVGKVVPFFEAKVVDLDTGK-TLGVNQRGELSVRGPMIMSGYVNNPEATN 414
Query: 403 DSFTADGFFKTGDTGKQDEDGYYIILGR 430
DG+ +GD DED ++ I+ R
Sbjct: 415 ALIDKDGWLHSGDIAYWDEDEHFFIVDR 442
>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
pdb|3G7S|B Chain B, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
Length = 549
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 96/379 (25%), Positives = 153/379 (40%), Gaps = 46/379 (12%)
Query: 68 GARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYRE 127
G +G+ S ++V + W VP+ Y EL H+++DS+ + ++ E
Sbjct: 77 GEHVGVCIPNSIDYVXTIYALWRVAATPVPINPXYKSFELEHILNDSEATTLVVHSXLYE 136
Query: 128 VLQNVASKSGA-KFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPK 186
+ V K+G + ++ N SE E + ED ALI YT GTTG PK
Sbjct: 137 NFKPVLEKTGVERVFVVGGEVNSLSEVXDSGSEDFENVKVNPEEDVALIPYTGGTTGXPK 196
Query: 187 GVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHV--HGLFNALLAPLYAGATVEFMP 244
GV TH ++ A L A + D + C P H GL N V
Sbjct: 197 GVXLTHFNLAANALQLAVATGLSHXDTIVGCXPXFHSAEFGLVN---------LXVTVGN 247
Query: 245 KFSVRGIWQRWRESYPVNGNRAGEAITAFTG-----VPTMYTRLIQGYEAMDTELQXXXX 299
++ V G + N E I + G VP L+ E+ +
Sbjct: 248 EYVVXGXF---------NQEXLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYDWSY- 297
Query: 300 XXXKQLRLMMCGSSALPLPVMQQW-----ETITGHRLLER--YGMTEFVMAI-SNPLRGA 351
L++ G+ + ++++ E RL +G TE + +NP
Sbjct: 298 -----LKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGXTEACPXVTTNPPLRL 352
Query: 352 RKAGTVGNPLPGVQVKIAEDESGSD--AAGVGEICVKSPSLFKEYWKLPKVTKDSFTAD- 408
K+ T G P +++K+ E G + GEI ++ P++FK YWK K ++ + D
Sbjct: 353 DKSTTQGVPXSDIELKVISLEDGRELGVGESGEIVIRGPNIFKGYWKREKENQECWWYDE 412
Query: 409 ---GFFKTGDTGKQDEDGY 424
FF+TGD G DE+G+
Sbjct: 413 KGRKFFRTGDVGFIDEEGF 431
>pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From
Legionella Pneumophila
pdb|3LNV|A Chain A, The Crystal Structure Of Fatty Acyl-Adenylate Ligase From
L. Pneumophila In Complex With Acyl Adenylate And
Pyrophosphate
Length = 590
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 93/404 (23%), Positives = 161/404 (39%), Gaps = 60/404 (14%)
Query: 68 GARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYP--ESELL----HVMHDSDISMVLS 121
G R+ ++ P + LG ++GCIAVP+ YP + +LL ++ +S +VL
Sbjct: 65 GDRVLLLFAPGLPLIQAFLGCLYAGCIAVPI---YPPAQEKLLDKAQRIVTNSKPVIVLX 121
Query: 122 TEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGT 181
D+ + + KF IP + + E+ ++S + + + D A + YTSG+
Sbjct: 122 IADHIKKFTADELNTNPKFLKIPAI---ALESIELNRSSSWQPTSIKSNDIAFLQYTSGS 178
Query: 182 TGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAG---- 237
T PKGV +H ++ + + ++ LP HH GL +L P+Y G
Sbjct: 179 TXHPKGVXVSHHNLLDNLNKIFTSFHXNDETIIFSWLPPHHDXGLIGCILTPIYGGIQAI 238
Query: 238 ----------------------ATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTG 275
AT+ P F+ +R RE G +TAF G
Sbjct: 239 XXSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKK-EGLDLSSWVTAFNG 297
Query: 276 VPTMYTRLIQGYEAMDTELQXXXXXX-----XKQLRLMMCGSSALPLPVMQQWETITGHR 330
+ + + E + L++ G + ++T+T +
Sbjct: 298 AEPVREETXEHFYQAFKEFGFRKEAFYPCYGLAEATLLVTGGTP-----GSSYKTLTLAK 352
Query: 331 LLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAGVGEICVKSPSL 390
E++ A N G+ K + GNP+ V++ + D VGEI V+S S+
Sbjct: 353 --EQFQDHRVHFADDNS-PGSYKLVSSGNPIQEVKIIDPDTLIPCDFDQVGEIWVQSNSV 409
Query: 391 FKEYWKLPKVTKDSFT--------ADGFFKTGDTGKQDEDGYYI 426
K YW P+ T+ +F + + +TGD G E+ Y+
Sbjct: 410 AKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLHENELYV 453
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 84/360 (23%), Positives = 147/360 (40%), Gaps = 48/360 (13%)
Query: 80 EFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAK 139
EFV L F G A + +E+ S+ ++++ Y + ++ + + G
Sbjct: 125 EFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQNDDGVV 184
Query: 140 FSLIP-----PVPNVSSETTVFDQSQAEKMDGQRG-----EDPALIVYTSGTTGKPKGVV 189
I P+P T QS E + +D + Y+SGTTG PKGV+
Sbjct: 185 IVCIDDNESVPIPEGCLRFTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVM 244
Query: 190 HTHK----SIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPK 245
THK S+ QV + S D L LP+ H++ L + +L L GA + MPK
Sbjct: 245 LTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPK 304
Query: 246 FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQXXXXXXXKQL 305
F + + + + +T VP + + + E +L +
Sbjct: 305 FEINLLLELIQRC----------KVTVAPMVPPIVLAIAKSSETEKYDLS--------SI 346
Query: 306 RLMMCGSSALPLPVMQQWE-----TITGHRLLERYGMTEFVMAISNPLRGAR-----KAG 355
R++ G++ P+ ++ E +L + YGMTE ++ L A+ K+G
Sbjct: 347 RVVKSGAA----PLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSG 402
Query: 356 TVGNPLPGVQVKIAEDESGSDAA--GVGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKT 413
G + ++KI + ++G + GEIC++ + K Y P T ++ DG+ T
Sbjct: 403 ACGTVVRNAEMKIVDPDTGDSLSRNQPGEICIRGHQIMKGYLNNPAATAETIDKDGWLHT 462
>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With High-Energy Intermediate
Analogue
Length = 548
Score = 82.0 bits (201), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 96/389 (24%), Positives = 158/389 (40%), Gaps = 54/389 (13%)
Query: 69 ARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREV 128
RI + ++ EF V+ F G P Y EL+H + S ++V S++ +
Sbjct: 78 GRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDK 137
Query: 129 LQNVASKSGAKFSLIPPVPNVSS------ETTV-------FDQSQAEKMDGQRGEDPALI 175
+ V +++ V +T + F S + ++ R E ALI
Sbjct: 138 VITVQKTVTTIKTIVILDSKVDYRGYQCLDTFIKRNTPPGFQASSFKTVEVDRKEQVALI 197
Query: 176 VYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQF------LHCLPLHHVHGLFNA 229
+ +SG+TG PKGV TH++I V + A + +Q L +P HH G+F
Sbjct: 198 MNSSGSTGLPKGVQLTHENI---VTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTT 254
Query: 230 LLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMY-----TRLI 284
L L G V + KF + ++ T+ VPT++ + L+
Sbjct: 255 L-GYLICGFRVVMLTKFDEETFLKTLQDY----------KCTSVILVPTLFAILNKSELL 303
Query: 285 QGYEAMD-TELQXXXXXXXKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMA 343
Y+ + E+ K++ + LP G R + YG+TE A
Sbjct: 304 NKYDLSNLVEIASGGAPLSKEVGEAVARRFNLP-----------GVR--QGYGLTETTSA 350
Query: 344 ISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAA--GVGEICVKSPSLFKEYWKLPKVT 401
I G K G G +P + K+ + ++ GE+CVK P L K Y P+ T
Sbjct: 351 IIITPEGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEAT 410
Query: 402 KDSFTADGFFKTGDTGKQDEDGYYIILGR 430
K+ +G+ TGD G DE+ ++ I+ R
Sbjct: 411 KELIDEEGWLHTGDIGYYDEEKHFFIVDR 439
>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Mgatp
pdb|2D1R|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Oxyluciferin And Amp
Length = 548
Score = 82.0 bits (201), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 96/389 (24%), Positives = 158/389 (40%), Gaps = 54/389 (13%)
Query: 69 ARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREV 128
RI + ++ EF V+ F G P Y EL+H + S ++V S++ +
Sbjct: 78 GRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDK 137
Query: 129 LQNVASKSGAKFSLIPPVPNVSS------ETTV-------FDQSQAEKMDGQRGEDPALI 175
+ V +++ V +T + F S + ++ R E ALI
Sbjct: 138 VITVQKTVTTIKTIVILDSKVDYRGYQCLDTFIKRNTPPGFQASSFKTVEVDRKEQVALI 197
Query: 176 VYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQF------LHCLPLHHVHGLFNA 229
+ +SG+TG PKGV TH++I V + A + +Q L +P HH G+F
Sbjct: 198 MNSSGSTGLPKGVQLTHENI---VTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTT 254
Query: 230 LLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMY-----TRLI 284
L L G V + KF + ++ T+ VPT++ + L+
Sbjct: 255 L-GYLICGFRVVMLTKFDEETFLKTLQDY----------KCTSVILVPTLFAILNKSELL 303
Query: 285 QGYEAMD-TELQXXXXXXXKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMA 343
Y+ + E+ K++ + LP G R + YG+TE A
Sbjct: 304 NKYDLSNLVEIASGGAPLSKEVGEAVARRFNLP-----------GVR--QGYGLTETTSA 350
Query: 344 ISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAA--GVGEICVKSPSLFKEYWKLPKVT 401
I G K G G +P + K+ + ++ GE+CVK P L K Y P+ T
Sbjct: 351 IIITPEGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEAT 410
Query: 402 KDSFTADGFFKTGDTGKQDEDGYYIILGR 430
K+ +G+ TGD G DE+ ++ I+ R
Sbjct: 411 KELIDEEGWLHTGDIGYYDEEKHFFIVDR 439
>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris
Turkestanicus Luciferase
Length = 582
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 98/393 (24%), Positives = 154/393 (39%), Gaps = 55/393 (13%)
Query: 66 GCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDY 125
G I + ++ S +F V G F G P Y E EL + + S ++V ++
Sbjct: 107 GLQHHIAVCSENSLQFFMPVCGALFIGVGVAPTNDIYNERELYNSLSISQPTIVFCSKRA 166
Query: 126 REVLQNVASKSGAKFSLIPPVPNV----SSETTVFDQSQAEKMDGQ-------------- 167
+ + V K +P + + S E + QS ++
Sbjct: 167 LQKILGVQKK-------LPIIQKIVILDSREDYMGKQSMYSFIESHLPAGFNEYDYIPDS 219
Query: 168 --RGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTE---AWEYTSADQFLHCLPLHH 222
R ALI+ +SG+TG PKGV THK+I + + + L +P HH
Sbjct: 220 FDRETATALIMNSSGSTGLPKGVELTHKNICVRFSHCRDPVFGNQIIPDTAILTVIPFHH 279
Query: 223 VHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTR 282
G+F L L G + M +F ++ R + Y + + +F T
Sbjct: 280 GFGMFTTL-GYLTCGFRIVLMYRFE-EELFLRSLQDYKIQSALLVPTLFSFFAKST---- 333
Query: 283 LIQGYEAMDT-ELQXXXXXXXKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFV 341
L+ Y+ + E+ K++ + LP G R + YG+TE
Sbjct: 334 LVDKYDLSNLHEIASGGAPLAKEVGEAVAKRFKLP-----------GIR--QGYGLTETT 380
Query: 342 MAISNPLRGAR-KAGTVGNPLPGVQVKIAEDESGSDAAGV---GEICVKSPSLFKEYWKL 397
AI RG K G G +P KI + ++G GV GE+CVK P + K Y
Sbjct: 381 SAIIITPRGRDDKPGACGKVVPFFSAKIVDLDTGK-TLGVNQRGELCVKGPMIMKGYVNN 439
Query: 398 PKVTKDSFTADGFFKTGDTGKQDEDGYYIILGR 430
P+ T DG+ +GD D+DGY+ I+ R
Sbjct: 440 PEATSALIDKDGWLHSGDIAYYDKDGYFFIVDR 472
>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A
Nonribosomal Peptide Synthetase Termination Module
Length = 1304
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 93/378 (24%), Positives = 157/378 (41%), Gaps = 41/378 (10%)
Query: 65 GGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTED 124
G G+ + + K S E V G+LG +G +P+ PE + +++ DS + +L+ ++
Sbjct: 511 AGKGSVVALYTKRSLELVIGILGVLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQE 570
Query: 125 YREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGK 184
+E + F + T F++ ++ DPA I+YTSGTTGK
Sbjct: 571 MKEQAAELPYTGTTLFI---------DDQTRFEEQASDPATAIDPNDPAYIMYTSGTTGK 621
Query: 185 PKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMP 244
PKG + TH +I V+ + + ++ D FL + F+A YA
Sbjct: 622 PKGNITTHANIQGLVKHV-DYMAFSDQDTFLSV-----SNYAFDAFTFDFYASMLN---- 671
Query: 245 KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQXXXXXXXKQ 304
+ R I E ++ R + I V M+ A+ L K
Sbjct: 672 --AARLIIA--DEHTLLDTERLTDLILQ-ENVNVMF-----ATTALFNLLTDAGEDWMKG 721
Query: 305 LRLMMCGSSALPLPVMQQWETITGH-RLLERYGMTE---FVMA-ISNPLRGARKAGTVGN 359
LR ++ G +P +++ I G +L+ YG TE F A + + L + + +G
Sbjct: 722 LRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDSISSLPIGK 781
Query: 360 PLPGVQVKIAEDESGSDAAG-VGEICVKSPSLFKEYWKLPKVTKDSFTADGF------FK 412
P+ V I ++S G VGE+C+ + K Y +TK+ F + F ++
Sbjct: 782 PISNASVYILNEQSQLQPFGAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYR 841
Query: 413 TGDTGKQDEDGYYIILGR 430
TGD + DG GR
Sbjct: 842 TGDLARWLPDGTIEYAGR 859
>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Red-Color Emission S286n Mutant Complexed
With High-Energy Intermediate Analogue
Length = 548
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 101/404 (25%), Positives = 156/404 (38%), Gaps = 84/404 (20%)
Query: 69 ARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTE----- 123
RI + ++ EF V+ F G P Y EL+H + S ++V S++
Sbjct: 78 GRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDK 137
Query: 124 ---------------------DYR--EVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQ 160
DYR + L ++ PP SS TV
Sbjct: 138 VITVQKTVTTIKTIVILDSKVDYRGYQCLDTFIKRN------TPPGYQASSFKTV----- 186
Query: 161 AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQF------ 214
+ R E ALI+ +SG+TG PKGV TH++I V + A + +Q
Sbjct: 187 ----EVDRKEQVALIMNSSGSTGLPKGVQLTHENI---VTRFSHARDPIYGNQVSPGTAV 239
Query: 215 LHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFT 274
L +P HH G+F L L G V + KF + ++ T
Sbjct: 240 LTVVPFHHGFGMFTTL-GYLICGFRVVMLTKFDEETFLKTLQDY----------KCTNVI 288
Query: 275 GVPTMY-----TRLIQGYEAMD-TELQXXXXXXXKQLRLMMCGSSALPLPVMQQWETITG 328
VPT++ + L+ Y+ + E+ K++ + LP G
Sbjct: 289 LVPTLFAILNKSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLP-----------G 337
Query: 329 HRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAA--GVGEICVK 386
R + YG+TE AI G K G G +P + K+ + ++ GE+CVK
Sbjct: 338 VR--QGYGLTETTSAIIITPEGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVK 395
Query: 387 SPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGR 430
P L K Y P+ TK+ +G+ TGD G DE+ ++ I+ R
Sbjct: 396 GPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDR 439
>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
pdb|3ETC|B Chain B, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
Length = 580
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 99/409 (24%), Positives = 170/409 (41%), Gaps = 51/409 (12%)
Query: 47 DLKTTSEKTKNENSAVLAG-GCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPES 105
DLK S+K N V G G G + + K ++F +LG G IAVP
Sbjct: 91 DLKYYSDKAAN--FFVKHGIGKGDYVMLTLKSRYDFWYCMLGLHKLGAIAVPATHMLKTR 148
Query: 106 ELLHVMHDSDISMV--LSTEDYREVLQNVASKSG------AKFS------LIPPVPNVSS 151
++++ + + + M+ ++ +D E + ++ G AK I +
Sbjct: 149 DIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDIPLKKAKVGGDVLEGWIDFRKELEE 208
Query: 152 ETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSA 211
+ +F++ E + ED L+ ++SGT G PK V H + + LT +
Sbjct: 209 SSPIFERPTGEV--STKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHI--LTAKYWQNVE 264
Query: 212 DQFLHCLPLHHVHG--LFNALLAPLYAGATVEFMP--KFSVRGIWQRWRESYPVNGNRAG 267
D LH G ++ L AG V +F + + ++ ++ G
Sbjct: 265 DDGLHYTVADSGWGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEK--------ASKYG 316
Query: 268 EAITAFTGVPTMYTRLIQGYEAMDTELQXXXXXXXKQLRLMMCGSSALPLPVMQQWETIT 327
+T F PT+Y LI+ + L+ + L V ++ T
Sbjct: 317 --VTTFCAPPTIYRFLIK---------EDLSHYNFSTLKYAVVAGEPLNPEVFNRFLEFT 365
Query: 328 GHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAE-DESGSDAAGVGEICV- 385
G +L+E +G TE V+ I+ K G++G P PG ++++ + D + GEI +
Sbjct: 366 GIKLMEGFGQTETVVTIATFPWMEPKPGSIGKPTPGYKIELMDRDGRLCEVGEEGEIVIN 425
Query: 386 ----KSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGR 430
K LF Y K P+ T++++ DG++ TGD DEDGY +GR
Sbjct: 426 TMEGKPVGLFVHYGKDPERTEETW-HDGYYHTGDMAWMDEDGYLWFVGR 473
>pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a, With L64p Mutation
pdb|3C5E|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Atp
pdb|3DAY|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp-Cpp
pdb|2VZE|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|C Chain C, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|3EQ6|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3EQ6|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3GPC|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
pdb|3GPC|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
Length = 570
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 93/403 (23%), Positives = 166/403 (41%), Gaps = 45/403 (11%)
Query: 47 DLKTTSEKTKNENSAVLAGGCGA----RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSY 102
+L S++ N VL+G CG R+ +V E+ +LG +G I +P +
Sbjct: 78 ELSENSQQAAN----VLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQM 133
Query: 103 PESELLHVMHDSDISMVLSTEDYREVLQNVASKSGA-KFSLIPPVPN----VSSETTVFD 157
+++L+ + S +++ ++ + + VAS+ + + L+ + ++ + + +
Sbjct: 134 KSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSEKSCDGWLNFKKLLNE 193
Query: 158 QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHC 217
S ++ + I +TSGT+G PK H++ S+ + +M W A +
Sbjct: 194 ASTTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKM-DAGWTGLQASDIMWT 252
Query: 218 LP-LHHVHGLFNALLAPLYAGAT--VEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFT 274
+ + + +L+ P GA V +PKF I + SYP I +
Sbjct: 253 ISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKT-LSSYP---------IKSMM 302
Query: 275 GVPTMYTRLIQGYEAMDTELQXXXXXXXKQLR-LMMCGSSALPLPVMQQWETITGHRLLE 333
G P +Y L+Q Q L+ + G S LP ++ W TG + E
Sbjct: 303 GAPIVYRMLLQ---------QDLSSYKFPHLQNCVTVGESLLP-ETLENWRAQTGLDIRE 352
Query: 334 RYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAGV-GEICVKSP---- 388
YG TE + K G +G V+I +D+ G G+I ++
Sbjct: 353 SYGQTETGLTCMVSKTMKIKPGYMGTAASCYDVQIIDDKGNVLPPGTEGDIGIRVKPIRP 412
Query: 389 -SLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGR 430
+F Y P T + D F+ GD G +DEDGY+ +GR
Sbjct: 413 IGIFSGYVDNPDKTAANIRGD-FWLLGDRGIKDEDGYFQFMGR 454
>pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|B Chain B, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|C Chain C, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
Length = 569
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 93/403 (23%), Positives = 166/403 (41%), Gaps = 45/403 (11%)
Query: 47 DLKTTSEKTKNENSAVLAGGCGA----RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSY 102
+L S++ N VL+G CG R+ +V E+ +LG +G I +P +
Sbjct: 78 ELSENSQQAAN----VLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQM 133
Query: 103 PESELLHVMHDSDISMVLSTEDYREVLQNVASKSGA-KFSLIPPVPN----VSSETTVFD 157
+++L+ + S +++ ++ + + VAS+ + + L+ + ++ + + +
Sbjct: 134 KSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSEKSCDGWLNFKKLLNE 193
Query: 158 QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHC 217
S ++ + I +TSGT+G PK H++ S+ + +M W A +
Sbjct: 194 ASTTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKM-DAGWTGLQASDIMWT 252
Query: 218 LP-LHHVHGLFNALLAPLYAGAT--VEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFT 274
+ + + +L+ P GA V +PKF I + SYP I +
Sbjct: 253 ISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKT-LSSYP---------IKSMM 302
Query: 275 GVPTMYTRLIQGYEAMDTELQXXXXXXXKQLR-LMMCGSSALPLPVMQQWETITGHRLLE 333
G P +Y L+Q Q L+ + G S LP ++ W TG + E
Sbjct: 303 GAPIVYRMLLQ---------QDLSSYKFPHLQNCVTVGESLLP-ETLENWRAQTGLDIRE 352
Query: 334 RYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAGV-GEICVKSP---- 388
YG TE + K G +G V+I +D+ G G+I ++
Sbjct: 353 SYGQTETGLTCMVSKTMKIKPGYMGTAASCYDVQIIDDKGNVLPPGTEGDIGIRVKPIRP 412
Query: 389 -SLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGR 430
+F Y P T + D F+ GD G +DEDGY+ +GR
Sbjct: 413 IGIFSGYVDNPDKTAANIRGD-FWLLGDRGIKDEDGYFQFMGR 454
>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|B Chain B, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|C Chain C, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
Length = 501
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 89/380 (23%), Positives = 147/380 (38%), Gaps = 48/380 (12%)
Query: 69 ARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREV 128
+R+G+ S + + + W + + +E+ + M D+ ++ T
Sbjct: 49 SRVGLYIDNSIQSIILIHACWLANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELR 108
Query: 129 LQNVASKSGAKFSLIPPVPN------------VSSETTVFDQSQAEKMDGQRG-EDPALI 175
+ S +F+ N S+ET V +S + ++ +D A I
Sbjct: 109 GFQIVSLDDIEFAGRDITTNGLLDNTMGIQYDTSNETVVPKESPSNILNTSFNLDDIASI 168
Query: 176 VYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLY 235
++TSGTTG K V T ++ A E+ + +L LP++H+ GL + LL +
Sbjct: 169 MFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISGL-SVLLRAVI 227
Query: 236 AGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQ 295
G TV + KF+ I + E IT + VP L+Q LQ
Sbjct: 228 EGFTVRIVDKFNAEQILTMIK----------NERITHISLVPQTLNWLMQQGLHEPYNLQ 277
Query: 296 XXXXXXXKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTE----FVMAISNPLRGA 351
K M+ + LP+ +GMTE F+ A L
Sbjct: 278 KILLGGAKLSATMIETALQYNLPIYNS------------FGMTETCSQFLTATPEMLHA- 324
Query: 352 RKAGTVGNPLPGVQVKIAEDESGSDAAGVGEICVKSPSLFKEYWKLPKVTKDSFTADGFF 411
+ TVG P V VKI + G GE+ +K ++ Y P +F +G+F
Sbjct: 325 -RPDTVGMPSANVDVKI----KNPNKEGHGELMIKGANVMNGYL-YPTDLTGTF-ENGYF 377
Query: 412 KTGDTGKQDEDGYYIILGRK 431
TGD + D +GY +I R+
Sbjct: 378 NTGDIAEIDHEGYVMIYDRR 397
>pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
pdb|3PBK|B Chain B, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
Length = 583
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 97/429 (22%), Positives = 169/429 (39%), Gaps = 109/429 (25%)
Query: 68 GARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYP-------ESELLHVMHDSDISMVL 120
G R+ ++A+ S EFV ++G +AVPLA+ ++L ++ + ++
Sbjct: 73 GDRVALIAETSSEFVEAFFACQYAGLVAVPLAIPXGVGQRDSWSAKLQGLLASCQPAAII 132
Query: 121 STEDYREVLQNVASK--------SGAKFSLIP--------PVPNVSSETTVFDQSQAEKM 164
+ +++ ++ N A+ S A F +P PVPN
Sbjct: 133 TGDEWLPLV-NAATHDNPELHVLSHAWFKALPEADVALQRPVPN---------------- 175
Query: 165 DGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLT-EAWEYTSADQFLHCLPLHHV 223
D A + YTSG+T P+GV+ TH+ + A ++ ++ + + D+ + LP +H
Sbjct: 176 ------DIAYLQYTSGSTRFPRGVIITHREVXANLRAISHDGIKLRPGDRCVSWLPFYHD 229
Query: 224 HGLFNALLAPLYAGATVEFM--PKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYT 281
GL LL P+ +V+++ F+ R + +W + ++ NR ++ P
Sbjct: 230 XGLVGFLLTPVATQLSVDYLRTQDFAXRPL--QWLKL--ISKNRGTVSVA-----PPF-- 278
Query: 282 RLIQGYEAMDTELQXXXXXXXKQLRLMMCGSSALPLPVMQQWETITGHRLLE-------- 333
GYE + + G A P+ Q + R +
Sbjct: 279 ----GYELCQRRVNEKDLAELDLSCWRVAGIGAEPISAEQLHQFAECFRQVNFDNKTFXP 334
Query: 334 RYGMTEFVMAIS-------------------------NPLRGARKAGT---VGNPLP--G 363
YG+ E +A+S P R T G LP G
Sbjct: 335 CYGLAENALAVSFSDEASGVVVNEVDRDILEYQGKAVAPGAETRAVSTFVNCGKALPEHG 394
Query: 364 VQVKIAEDESGSDAAG--VGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDE 421
++++ +E+G A VG IC+ PSL Y+ +V++D A G+ TGD G
Sbjct: 395 IEIR---NEAGXPVAERVVGHICISGPSLXSGYFG-DQVSQDEIAATGWLDTGDLGYL-L 449
Query: 422 DGYYIILGR 430
DGY + GR
Sbjct: 450 DGYLYVTGR 458
>pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Atp From Streptomyces
pdb|3VNR|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Aminobutyric Acid And Amp From Streptomyces
pdb|3VNS|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With D-valine And Amp From Streptomyces
Length = 544
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 91/387 (23%), Positives = 153/387 (39%), Gaps = 59/387 (15%)
Query: 68 GARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVL-STEDYR 126
G R+ + P E + +L G VP+ L P S ++ DS S ++ +
Sbjct: 85 GDRVALRMSPGAEAIVAILAILKCGAAYVPVDLRNPVSRSDFILADSGASALIGEPHEGC 144
Query: 127 EVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPK 186
V + V + + A+ P P + G ED A ++YTSGTTG PK
Sbjct: 145 AVTRVVRTAAVAECKDAEPGPVTGAP-------------GPGAEDMAYVIYTSGTTGNPK 191
Query: 187 GVVHTHKSIDAQVQMLTEAWEYTSADQFL--HCLPLH----HVHGLFNALLAPLYAGATV 240
GV H ++ A + ++++ D++L H L + G F+ GA +
Sbjct: 192 GVPVRHANVLALLAGAPSVFDFSGDDRWLLFHSLSFDFSVWEIWGAFS-------TGAEL 244
Query: 241 EFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQXXXXX 300
+P ++ R Q V +R +T PT + L TE
Sbjct: 245 VVLPHWAARTPEQ----YLAVIIDR---GVTVINQTPTAFLAL--------TEAAVRGGR 289
Query: 301 XXKQLRLMMCGSSALPLPVMQQWETITG---HRLLERYGMTEFVMAISNPLRG----ARK 353
LR ++ G L P+++ W G RL+ YG+TE + + A+
Sbjct: 290 DVSGLRYVIFGGEKLTAPMLRPWAKAFGLDRPRLVNGYGITETTVFTTFEEITEAYLAQD 349
Query: 354 AGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSLFKEYWKLPKVTKDSF------- 405
A +G LP ++ D+ A G GE+ + L + Y + P++T + F
Sbjct: 350 ASIIGRALPSFGTRVVGDDGRDVAPGETGELWLSGAQLAEGYLRRPELTAEKFPEVTDEK 409
Query: 406 TADG--FFKTGDTGKQDEDGYYIILGR 430
T + +++TGD + DG + GR
Sbjct: 410 TGESVRYYRTGDLVSELPDGRFAYEGR 436
>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation
pdb|2P2B|B Chain B, Acetyl-coa Synthetase, V386a Mutation
Length = 652
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 77/291 (26%), Positives = 126/291 (43%), Gaps = 40/291 (13%)
Query: 158 QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKS-IDAQVQMLTEAWEYTSADQFLH 216
+ Q E M+ EDP I+YTSG+TGKPKGV+HT + ++Y D +
Sbjct: 247 EHQPEAMNA---EDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWC 303
Query: 217 CLPLHHVHGLFNALLAPLYAGATV---EFMPKFSVRGIWQRWRESYPVNGNRAGEAITAF 273
+ V G L PL GAT E +P + R V+ ++ TA
Sbjct: 304 TADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPA-----RMCQVVDKHQVNILYTAP 358
Query: 274 TGVPTMYTRLIQGYEAMDTELQXXXXXXXKQLRLMMCGSSALPL-PVMQQ--WETITGHR 330
T + + + E D LR++ GS+ P+ P + W+ I +
Sbjct: 359 TAIRALMAEGDKAIEGTD----------RSSLRIL--GSAGEPINPEAWEWYWKKIGKEK 406
Query: 331 --LLERYGMTEFVMAISNPLRGA--RKAGTVGNPLPGVQVKIAEDESG-SDAAGVGEICV 385
+++ + TE + PL GA KAG+ P GVQ + ++E + A G + +
Sbjct: 407 CPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGATEGNLVI 466
Query: 386 ------KSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGR 430
++ +LF ++ + + +F + +GD ++DEDGYY I GR
Sbjct: 467 TDSWPGQARTLFGDHERFEQTYFSTFK--NMYFSGDGARRDEDGYYWITGR 515
>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG3|B Chain B, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG4|A Chain A, Acetyl Coa Synthetase, Salmonella Enterica
pdb|1PG4|B Chain B, Acetyl Coa Synthetase, Salmonella Enterica
Length = 652
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 75/289 (25%), Positives = 121/289 (41%), Gaps = 36/289 (12%)
Query: 158 QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKS-IDAQVQMLTEAWEYTSADQFLH 216
+ Q E M+ EDP I+YTSG+TGKPKGV+HT + ++Y D +
Sbjct: 247 EHQPEAMNA---EDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWC 303
Query: 217 CLPLHHVHGLFNALLAPLYAGATV---EFMPKFSVRGIWQRWRESYPVNGNRAGEAITAF 273
+ V G L PL GAT E +P + R V+ ++ TA
Sbjct: 304 TADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPA-----RMCQVVDKHQVNILYTAP 358
Query: 274 TGVPTMYTRLIQGYEAMDTELQXXXXXXXKQLRLM-MCGSSALPLPVMQQWETITGHR-- 330
T + + + E D LR++ G P W+ I +
Sbjct: 359 TAIRALMAEGDKAIEGTD----------RSSLRILGSVGEPINPEAWEWYWKKIGKEKCP 408
Query: 331 LLERYGMTEFVMAISNPLRGA--RKAGTVGNPLPGVQVKIAEDESG-SDAAGVGEICV-- 385
+++ + TE + PL GA KAG+ P GVQ + ++E + A G + +
Sbjct: 409 VVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGATEGNLVITD 468
Query: 386 ----KSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGR 430
++ +LF ++ + + +F + +GD ++DEDGYY I GR
Sbjct: 469 SWPGQARTLFGDHERFEQTYFSTFK--NMYFSGDGARRDEDGYYWITGR 515
>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
pdb|2P2F|B Chain B, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
Length = 652
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 75/289 (25%), Positives = 121/289 (41%), Gaps = 36/289 (12%)
Query: 158 QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKS-IDAQVQMLTEAWEYTSADQFLH 216
+ Q E M+ EDP I+YTSG+TGKPKGV+HT + ++Y D +
Sbjct: 247 EHQPEAMNA---EDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWC 303
Query: 217 CLPLHHVHGLFNALLAPLYAGATV---EFMPKFSVRGIWQRWRESYPVNGNRAGEAITAF 273
+ V G L PL GAT E +P + R V+ ++ TA
Sbjct: 304 TADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPA-----RMCQVVDKHQVNILYTAP 358
Query: 274 TGVPTMYTRLIQGYEAMDTELQXXXXXXXKQLRLM-MCGSSALPLPVMQQWETITGHR-- 330
T + + + E D LR++ G P W+ I +
Sbjct: 359 TAIRALMAEGDKAIEGTD----------RSSLRILGSVGEPINPEAWEWYWKKIGKEKCP 408
Query: 331 LLERYGMTEFVMAISNPLRGA--RKAGTVGNPLPGVQVKIAEDESG-SDAAGVGEICV-- 385
+++ + TE + PL GA KAG+ P GVQ + ++E + A G + +
Sbjct: 409 VVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGATEGNLVITD 468
Query: 386 ----KSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGR 430
++ +LF ++ + + +F + +GD ++DEDGYY I GR
Sbjct: 469 SWPGQARTLFGDHERFEQTYFSTFK--NMYFSGDGARRDEDGYYWITGR 515
>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation
pdb|2P2J|B Chain B, Acetyl-Coa Synthetase, K609a Mutation
Length = 652
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 75/289 (25%), Positives = 121/289 (41%), Gaps = 36/289 (12%)
Query: 158 QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKS-IDAQVQMLTEAWEYTSADQFLH 216
+ Q E M+ EDP I+YTSG+TGKPKGV+HT + ++Y D +
Sbjct: 247 EHQPEAMNA---EDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWC 303
Query: 217 CLPLHHVHGLFNALLAPLYAGATV---EFMPKFSVRGIWQRWRESYPVNGNRAGEAITAF 273
+ V G L PL GAT E +P + R V+ ++ TA
Sbjct: 304 TADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPA-----RMCQVVDKHQVNILYTAP 358
Query: 274 TGVPTMYTRLIQGYEAMDTELQXXXXXXXKQLRLM-MCGSSALPLPVMQQWETITGHR-- 330
T + + + E D LR++ G P W+ I +
Sbjct: 359 TAIRALMAEGDKAIEGTD----------RSSLRILGSVGEPINPEAWEWYWKKIGKEKCP 408
Query: 331 LLERYGMTEFVMAISNPLRGA--RKAGTVGNPLPGVQVKIAEDESG-SDAAGVGEICV-- 385
+++ + TE + PL GA KAG+ P GVQ + ++E + A G + +
Sbjct: 409 VVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGATEGNLVITD 468
Query: 386 ----KSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGR 430
++ +LF ++ + + +F + +GD ++DEDGYY I GR
Sbjct: 469 SWPGQARTLFGDHERFEQTYFSTFK--NMYFSGDGARRDEDGYYWITGR 515
>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation
pdb|2P2M|B Chain B, Acetyl-Coa Synthetase, R194a Mutation
Length = 652
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 75/289 (25%), Positives = 121/289 (41%), Gaps = 36/289 (12%)
Query: 158 QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKS-IDAQVQMLTEAWEYTSADQFLH 216
+ Q E M+ EDP I+YTSG+TGKPKGV+HT + ++Y D +
Sbjct: 247 EHQPEAMNA---EDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWC 303
Query: 217 CLPLHHVHGLFNALLAPLYAGATV---EFMPKFSVRGIWQRWRESYPVNGNRAGEAITAF 273
+ V G L PL GAT E +P + R V+ ++ TA
Sbjct: 304 TADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPA-----RMCQVVDKHQVNILYTAP 358
Query: 274 TGVPTMYTRLIQGYEAMDTELQXXXXXXXKQLRLM-MCGSSALPLPVMQQWETITGHR-- 330
T + + + E D LR++ G P W+ I +
Sbjct: 359 TAIRALMAEGDKAIEGTD----------RSSLRILGSVGEPINPEAWEWYWKKIGKEKCP 408
Query: 331 LLERYGMTEFVMAISNPLRGA--RKAGTVGNPLPGVQVKIAEDESG-SDAAGVGEICV-- 385
+++ + TE + PL GA KAG+ P GVQ + ++E + A G + +
Sbjct: 409 VVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGATEGNLVITD 468
Query: 386 ----KSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGR 430
++ +LF ++ + + +F + +GD ++DEDGYY I GR
Sbjct: 469 SWPGQARTLFGDHERFEQTYFSTFK--NMYFSGDGARRDEDGYYWITGR 515
>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation
pdb|2P20|B Chain B, Acetyl-Coa Synthetase, R584a Mutation
Length = 652
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 75/289 (25%), Positives = 121/289 (41%), Gaps = 36/289 (12%)
Query: 158 QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKS-IDAQVQMLTEAWEYTSADQFLH 216
+ Q E M+ EDP I+YTSG+TGKPKGV+HT + ++Y D +
Sbjct: 247 EHQPEAMNA---EDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWC 303
Query: 217 CLPLHHVHGLFNALLAPLYAGATV---EFMPKFSVRGIWQRWRESYPVNGNRAGEAITAF 273
+ V G L PL GAT E +P + R V+ ++ TA
Sbjct: 304 TADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPA-----RMCQVVDKHQVNILYTAP 358
Query: 274 TGVPTMYTRLIQGYEAMDTELQXXXXXXXKQLRLM-MCGSSALPLPVMQQWETITGHR-- 330
T + + + E D LR++ G P W+ I +
Sbjct: 359 TAIRALMAEGDKAIEGTD----------RSSLRILGSVGEPINPEAWEWYWKKIGKEKCP 408
Query: 331 LLERYGMTEFVMAISNPLRGA--RKAGTVGNPLPGVQVKIAEDESG-SDAAGVGEICV-- 385
+++ + TE + PL GA KAG+ P GVQ + ++E + A G + +
Sbjct: 409 VVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGATEGNLVITD 468
Query: 386 ----KSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGR 430
++ +LF ++ + + +F + +GD ++DEDGYY I GR
Sbjct: 469 SWPGQARTLFGDHERFEQTYFSTFK--NMYFSGDGARRDEDGYYWITGR 515
>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation
pdb|2P2Q|B Chain B, Acetyl-Coa Synthetase, R584e Mutation
Length = 652
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 75/289 (25%), Positives = 121/289 (41%), Gaps = 36/289 (12%)
Query: 158 QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKS-IDAQVQMLTEAWEYTSADQFLH 216
+ Q E M+ EDP I+YTSG+TGKPKGV+HT + ++Y D +
Sbjct: 247 EHQPEAMNA---EDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWC 303
Query: 217 CLPLHHVHGLFNALLAPLYAGATV---EFMPKFSVRGIWQRWRESYPVNGNRAGEAITAF 273
+ V G L PL GAT E +P + R V+ ++ TA
Sbjct: 304 TADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPA-----RMCQVVDKHQVNILYTAP 358
Query: 274 TGVPTMYTRLIQGYEAMDTELQXXXXXXXKQLRLM-MCGSSALPLPVMQQWETITGHR-- 330
T + + + E D LR++ G P W+ I +
Sbjct: 359 TAIRALMAEGDKAIEGTD----------RSSLRILGSVGEPINPEAWEWYWKKIGKEKCP 408
Query: 331 LLERYGMTEFVMAISNPLRGA--RKAGTVGNPLPGVQVKIAEDESG-SDAAGVGEICV-- 385
+++ + TE + PL GA KAG+ P GVQ + ++E + A G + +
Sbjct: 409 VVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGATEGNLVITD 468
Query: 386 ----KSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGR 430
++ +LF ++ + + +F + +GD ++DEDGYY I GR
Sbjct: 469 SWPGQARTLFGDHERFEQTYFSTFK--NMYFSGDGARRDEDGYYWITGR 515
>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|B Chain B, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|C Chain C, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|D Chain D, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|E Chain E, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|F Chain F, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|G Chain G, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|H Chain H, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|I Chain I, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|J Chain J, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
Length = 617
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 66/258 (25%), Positives = 111/258 (43%), Gaps = 20/258 (7%)
Query: 178 TSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFN-ALLAPLYA 236
+ GTTG PK + TH V+ E ++T ++L +P H + + + L A
Sbjct: 192 SGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLA 251
Query: 237 GATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQX 296
G TV S + E + VN +TA VP + +Q ++ Q
Sbjct: 252 GGTVVLAADPSATLCFP-LIEKHQVN-------VTAL--VPPAVSLWLQALIEGESRAQL 301
Query: 297 XXXXXXKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKA-G 355
L+L+ G + L + + G +L + +GM E ++ + A K
Sbjct: 302 A------SLKLLQVGGARLSATLAARIPAEIGCQLQQVFGMAEGLVNYTRLDDSAEKIIH 355
Query: 356 TVGNPL-PGVQVKIAEDESGSDAAG-VGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKT 413
T G P+ P +V +A+ E G VG + + P F+ Y+K P+ +F A+GF+ +
Sbjct: 356 TQGYPMCPDDEVWVADAEGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCS 415
Query: 414 GDTGKQDEDGYYIILGRK 431
GD D +GY + GR+
Sbjct: 416 GDLISIDPEGYITVQGRE 433
>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate
pdb|1MDF|A Chain A, Crystal Structure Of Dhbe In Absence Of Substrate
Length = 539
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 82/364 (22%), Positives = 147/364 (40%), Gaps = 35/364 (9%)
Query: 80 EFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSD-----ISMVLSTEDYREVLQNVAS 134
EF + + G + V S+ SE+ + ++ I S DYR + + V S
Sbjct: 87 EFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQS 146
Query: 135 KSGAKFSLIPPVPNVSSETTVFDQSQAE--KMDGQRGEDPALIVYTSGTTGKPKGVVHTH 192
K ++I V + E + E K+ + D A + + G+TG K + TH
Sbjct: 147 KLPTLKNII--VAGEAEEFLPLEDLHTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTH 204
Query: 193 KSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFN-ALLAPLYAGATVEFMPKFSVRGI 251
++ E + +L LP+ H + L + +L LYAG V P S
Sbjct: 205 DDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPSPSPD-- 262
Query: 252 WQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQXXXXXXXKQLRLMMCG 311
+++P+ R ITA VP + + + +L L+++ G
Sbjct: 263 -----DAFPLI-EREKVTITAL--VPPLAMVWMDAASSRRDDLS--------SLQVLQVG 306
Query: 312 SSALPLPVMQQWETITGHRLLERYGMTEFVM---AISNPLRGARKAGTVGNPL-PGVQVK 367
+ ++ + + G L + +GM E ++ + +P T G P+ P + +
Sbjct: 307 GAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEII--VNTQGKPMSPYDESR 364
Query: 368 IAEDESGSDAAG-VGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYI 426
+ +D G G + + P + Y+K + SFT DGF++TGD + DGY +
Sbjct: 365 VWDDHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIV 424
Query: 427 ILGR 430
+ GR
Sbjct: 425 VEGR 428
>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QVY|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3,4- Dichlorobenzoate
Length = 504
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 92/388 (23%), Positives = 148/388 (38%), Gaps = 70/388 (18%)
Query: 70 RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVL--------- 120
R+ +VA S + V +L G + L +EL ++ +++ +
Sbjct: 56 RVAVVAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVAD 115
Query: 121 ----STEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIV 176
S R + + G +S PP+ + E PA I
Sbjct: 116 AIFQSGSGARIIFLGDLVRDGEPYSYGPPIEDPQREPA----------------QPAFIF 159
Query: 177 YTSGTTGKPKGVVHTHKSIDAQVQMLTE--AWEYTSADQFLHCLPLHHVHGLFNALLAPL 234
YTSGTTG PK + ++ +++V ++ + + L +PL+HV G F L+A L
Sbjct: 160 YTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAAL 219
Query: 235 YAGATV----EFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAM 290
T EF P +++ + Q E +T+ PT L
Sbjct: 220 ALDGTYVVVEEFRPVDALQLVQQ--------------EQVTSLFATPTHLDALAAAAAHA 265
Query: 291 DTELQXXXXXXXKQLRLMMCGSSALPLPVMQQWETITGHRLLER---YGMTEFVMAISNP 347
+ L+ LR + + +P V+ ET+ H E+ YG TE A+++
Sbjct: 266 GSSLK------LDSLRHVTFAGATMPDAVL---ETVHQHLPGEKVNGYGTTE---AMNSL 313
Query: 348 LRGARKAGTVGNPLPGVQVKIAEDESGSD---AAG-VGEICV-KSPSLFKEYWKLPKVTK 402
K GT P +V+I G D A G GE+ V S S F Y P+ T
Sbjct: 314 YMRQPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATA 373
Query: 403 DSFTADGFFKTGDTGKQDEDGYYIILGR 430
+ DG+++T D +G ILGR
Sbjct: 374 EKLQ-DGWYRTSDVAVWTPEGTVRILGR 400
>pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In
Complex With Amp
Length = 663
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 73/281 (25%), Positives = 113/281 (40%), Gaps = 38/281 (13%)
Query: 170 EDPALIVYTSGTTGKPKGVVH-THKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFN 228
EDP ++YTSG+TG PKGV H T + + + ++ D F + + G
Sbjct: 262 EDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHTY 321
Query: 229 ALLAPL-YAGATVEF-----MPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTR 282
+ PL Y AT+ F P +S W E +T F PT R
Sbjct: 322 VVYGPLLYGCATLVFEGTPAYPNYS--RYWDIIDE----------HKVTQFYVAPTAL-R 368
Query: 283 LIQGYEAMDTELQXXXXXXXKQLRLMMCGSSALPLPVMQQWETITGHR---LLERYGMTE 339
L++ A D+ ++ K LR + + V + + G +++ Y TE
Sbjct: 369 LLK--RAGDSYIENHSL---KSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTE 423
Query: 340 FVMAISNPLRGA---RKAGTVGNPLPGVQVKIAEDESG-----SDAAGVGEICVKSPSLF 391
+ PL G K G+ P G+ + + +G S A GV + PS
Sbjct: 424 SGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFA 483
Query: 392 KEYWKLPKVTKDSFTAD--GFFKTGDTGKQDEDGYYIILGR 430
+ WK D++ G++ TGD +D+DGY ILGR
Sbjct: 484 RTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGR 524
>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QW0|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, I303a Mutation,
Bound To 3,4 Dichlorobenzoate
Length = 504
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 92/388 (23%), Positives = 148/388 (38%), Gaps = 70/388 (18%)
Query: 70 RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVL--------- 120
R+ +VA S + V +L G + L +EL ++ +++ +
Sbjct: 56 RVAVVAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVAD 115
Query: 121 ----STEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIV 176
S R + + G +S PP+ + E PA I
Sbjct: 116 AIFQSGSGARIIFLGDLVRDGEPYSYGPPIEDPQREPA----------------QPAFIF 159
Query: 177 YTSGTTGKPKGVVHTHKSIDAQVQMLTE--AWEYTSADQFLHCLPLHHVHGLFNALLAPL 234
YTSGTTG PK + ++ +++V ++ + + L +PL+HV G F L+A L
Sbjct: 160 YTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAAL 219
Query: 235 YAGATV----EFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAM 290
T EF P +++ + Q E +T+ PT L
Sbjct: 220 ALDGTYVVVEEFRPVDALQLVQQ--------------EQVTSLFATPTHLDALAAAAAHA 265
Query: 291 DTELQXXXXXXXKQLRLMMCGSSALPLPVMQQWETITGHRLLER---YGMTEFVMAISNP 347
+ L+ LR + + +P V+ ET+ H E+ YG TE A+++
Sbjct: 266 GSSLK------LDSLRHVTFAGATMPDAVL---ETVHQHLPGEKVNAYGTTE---AMNSL 313
Query: 348 LRGARKAGTVGNPLPGVQVKIAEDESGSD---AAG-VGEICV-KSPSLFKEYWKLPKVTK 402
K GT P +V+I G D A G GE+ V S S F Y P+ T
Sbjct: 314 YMRQPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATA 373
Query: 403 DSFTADGFFKTGDTGKQDEDGYYIILGR 430
+ DG+++T D +G ILGR
Sbjct: 374 EKLQ-DGWYRTSDVAVWTPEGTVRILGR 400
>pdb|3E53|A Chain A, Crystal Structure Of N-Terminal Domain Of A Fatty Acyl Amp
Ligase Faal28 From Mycobacterium Tuberculosis
Length = 480
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 97/424 (22%), Positives = 156/424 (36%), Gaps = 80/424 (18%)
Query: 65 GGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLH-----VMHDSDISMV 119
G G R+ I A E+V LG +G IAVPL S P+ + V+ DS +
Sbjct: 79 GSTGDRVVISAPQGLEYVVAFLGALQAGRIAVPL--SVPQGGVTDERSDSVLSDSSPVAI 136
Query: 120 LSTED-YREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDP--ALIV 176
L+T +V+Q+VA + G P E + D + E P A +
Sbjct: 137 LTTSSAVDDVVQHVARRPGES-------PPSIIEVDLLDLDAPNGYTFKEDEYPSTAYLQ 189
Query: 177 YTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSAD-------QFLHCLPLHHVHGLFNA 229
YTSG+T P GVV +H+++ + L + + D + LP +H GL
Sbjct: 190 YTSGSTRTPAGVVXSHQNVRVNFEQLXSGY-FADTDGIPPPNSALVSWLPFYHDXGLVIG 248
Query: 230 LLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEA 289
+ AP+ G S RW + AF+ P L A
Sbjct: 249 ICAPILGGYPAVLTSPVSFLQRPARWX-------HLXASDFHAFSAAPNFAFEL----AA 297
Query: 290 MDTELQXXXXXXXKQLRLMMCGSSALPLPVMQQW-ETITGHRLLER-----YGMTEFVMA 343
T + ++ GS + ++++ + L ER YG+ E +
Sbjct: 298 RRTTDDDXAGRDLGNILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYGLAEATVY 357
Query: 344 ISN-----------------------PLRGARKAGTVGNPLPGVQ-VKIAEDESGSDA-- 377
++ P G + LP V+I + ++ +
Sbjct: 358 VATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYXLPRSPIVRIVDSDTCIECPD 417
Query: 378 AGVGEICVKSPSLFKEYWKLPKVTKDSF----------TADG-FFKTGDTGKQDEDGYYI 426
VGEI V ++ YW+ P ++ +F T +G + +TGD+G DG
Sbjct: 418 GTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFV-TDGKXF 476
Query: 427 ILGR 430
I+GR
Sbjct: 477 IIGR 480
>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO
4-Chlorobenzoate
pdb|3CW9|A Chain A, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
pdb|3CW9|B Chain B, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
Length = 504
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 90/388 (23%), Positives = 145/388 (37%), Gaps = 70/388 (18%)
Query: 70 RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVL--------- 120
R+ +VA S + V +L G + L +EL ++ +++ +
Sbjct: 56 RVAVVAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVAD 115
Query: 121 ----STEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIV 176
S R + + G +S PP+ + E PA I
Sbjct: 116 AIFQSGSGARIIFLGDLVRDGEPYSYGPPIEDPQREPA----------------QPAFIF 159
Query: 177 YTSGTTGKPKGVVHTHKSIDAQVQMLTE--AWEYTSADQFLHCLPLHHVHGLFNALLAPL 234
YTSGTTG PK + ++ +++V ++ + + L +PL+HV G F L+A L
Sbjct: 160 YTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAAL 219
Query: 235 YAGATV----EFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAM 290
T EF P +++ + Q E +T+ PT L
Sbjct: 220 ALDGTYVVVEEFRPVDALQLVQQ--------------EQVTSLFATPTHLDALAAAAAHA 265
Query: 291 DTELQXXXXXXXKQLRLMMCGSSALPLPVMQQWETITGHRLLER---YGMTEFVMAISNP 347
+ L+ LR + + +P V+ ET+ H E+ YG TE A+++
Sbjct: 266 GSSLK------LDSLRHVTFAGATMPDAVL---ETVHQHLPGEKVNIYGTTE---AMNSL 313
Query: 348 LRGARKAGTVGNPLPGVQVKIAEDESGSD-AAGVGE----ICVKSPSLFKEYWKLPKVTK 402
K GT P +V+I G D GE I S S F Y P+ T
Sbjct: 314 YMRQPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATA 373
Query: 403 DSFTADGFFKTGDTGKQDEDGYYIILGR 430
+ DG+++T D +G ILGR
Sbjct: 374 EKLQ-DGWYRTSDVAVWTPEGTVRILGR 400
>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND
To 4cb
Length = 504
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 90/388 (23%), Positives = 145/388 (37%), Gaps = 70/388 (18%)
Query: 70 RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVL--------- 120
R+ +VA S + V +L G + L +EL ++ +++ +
Sbjct: 56 RVAVVAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVAD 115
Query: 121 ----STEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIV 176
S R + + G +S PP+ + E PA I
Sbjct: 116 AIFQSGSGARIIFLGDLVRDGEPYSYGPPIEDPQREPA----------------QPAFIF 159
Query: 177 YTSGTTGKPKGVVHTHKSIDAQVQMLTE--AWEYTSADQFLHCLPLHHVHGLFNALLAPL 234
YTSGTTG PK + ++ +++V ++ + + L +PL+HV G F L+A L
Sbjct: 160 YTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAAL 219
Query: 235 YAGATV----EFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAM 290
T EF P +++ + Q E +T+ PT L
Sbjct: 220 ALDGTYVVVEEFRPVDALQLVQQ--------------EQVTSLFATPTHLDALAAAAAHA 265
Query: 291 DTELQXXXXXXXKQLRLMMCGSSALPLPVMQQWETITGHRLLER---YGMTEFVMAISNP 347
+ L+ LR + + +P V+ ET+ H E+ YG TE A+++
Sbjct: 266 GSSLK------LDSLRHVTFAGATMPDAVL---ETVHQHLPGEKVNIYGTTE---AMNSL 313
Query: 348 LRGARKAGTVGNPLPGVQVKIAEDESGSD-AAGVGE----ICVKSPSLFKEYWKLPKVTK 402
K GT P +V+I G D GE I S S F Y P+ T
Sbjct: 314 YMRQPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATA 373
Query: 403 DSFTADGFFKTGDTGKQDEDGYYIILGR 430
+ DG+++T D +G ILGR
Sbjct: 374 EKLQ-DGWYRTSDVAVWTPEGTVRILGR 400
>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To
4cba-adenylate
Length = 504
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 92/388 (23%), Positives = 148/388 (38%), Gaps = 70/388 (18%)
Query: 70 RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVL--------- 120
R+ +VA S + V +L G + L +EL ++ +++ +
Sbjct: 56 RVAVVAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVAD 115
Query: 121 ----STEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIV 176
S R + + G +S PP+ + E PA I
Sbjct: 116 AIFQSGSGARIIFLGDLVRDGEPYSYGPPIEDPQREPA----------------QPAFIF 159
Query: 177 YTSGTTGKPKGVVHTHKSIDAQVQMLTE--AWEYTSADQFLHCLPLHHVHGLFNALLAPL 234
YTSGTTG PK + ++ +++V ++ + + L +PL+HV G F L+A L
Sbjct: 160 YTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAAL 219
Query: 235 YAGATV----EFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAM 290
T EF P +++ + Q E +T+ PT L
Sbjct: 220 ALDGTYVVIEEFRPVDALQLVQQ--------------EQVTSLFATPTHLDALAAAAAHA 265
Query: 291 DTELQXXXXXXXKQLRLMMCGSSALPLPVMQQWETITGHRLLER---YGMTEFVMAISNP 347
+ L+ LR + + +P V+ ET+ H E+ YG TE A+++
Sbjct: 266 GSSLK------LDSLRHVTFAGATMPDAVL---ETVHQHLPGEKVNIYGTTE---AMNSL 313
Query: 348 LRGARKAGTVGNPLPGVQVKIAEDESGSD---AAG-VGEICV-KSPSLFKEYWKLPKVTK 402
K GT P +V+I G D A G GE+ V S S F Y P+ T
Sbjct: 314 YMRQPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPEATA 373
Query: 403 DSFTADGFFKTGDTGKQDEDGYYIILGR 430
+ DG+++T D +G ILGR
Sbjct: 374 EKLQ-DGWYRTSDVAVWTPEGTVRILGR 400
>pdb|3T5A|A Chain A, Crystal Structure Of N-Terminal Domain Of Faal28 G330w
Mutant From Mycobacterium Tuberculosis
Length = 480
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 80/189 (42%), Gaps = 25/189 (13%)
Query: 64 AGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLH-----VMHDSDISM 118
G G R+ I A E+V LG +G IAVPL S P+ + V+ DS
Sbjct: 78 CGSTGDRVVISAPQGLEYVVAFLGALQAGRIAVPL--SVPQGGVTDERSDSVLSDSSPVA 135
Query: 119 VLSTED-YREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDP--ALI 175
+L+T +V+Q+VA + G P E + D + E P A +
Sbjct: 136 ILTTSSAVDDVVQHVARRPGES-------PPSIIEVDLLDLDAPNGYTFKEDEYPSTAYL 188
Query: 176 VYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSAD-------QFLHCLPLHHVHGLFN 228
YTSG+T P GVV +H+++ + L + + D + LP +H GL
Sbjct: 189 QYTSGSTRTPAGVVMSHQNVRVNFEQLMSGY-FADTDGIPPPNSALVSWLPFYHDMGLVI 247
Query: 229 ALLAPLYAG 237
+ AP+ G
Sbjct: 248 GICAPILGG 256
>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp
Length = 539
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 81/363 (22%), Positives = 143/363 (39%), Gaps = 33/363 (9%)
Query: 80 EFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSD-----ISMVLSTEDYREVLQNVAS 134
EF + + G + V S+ SE+ + ++ I S DYR + + V S
Sbjct: 87 EFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQS 146
Query: 135 KSGAKFSLIPPVPNVSSETTVFDQSQAE--KMDGQRGEDPALIVYTSGTTGKPKGVVHTH 192
K ++I V + E + E K+ + D A + + G+TG K + TH
Sbjct: 147 KLPTLKNII--VAGEAEEFLPLEDLHTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTH 204
Query: 193 KSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFN-ALLAPLYAGATVEFMPKFSVRGI 251
++ E + +L LP H + L + +L LYAG V P S
Sbjct: 205 DDYIYSLKRSVEVCWLDHSTVYLAALPXAHNYPLSSPGVLGVLYAGGRVVLSPSPSPD-- 262
Query: 252 WQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQXXXXXXXKQLRLMMCG 311
+++P+ R ITA VP + + +L L+++ G
Sbjct: 263 -----DAFPLI-EREKVTITAL--VPPLAXVWXDAASSRRDDLS--------SLQVLQVG 306
Query: 312 SSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARK--AGTVGNPL-PGVQVKI 368
+ ++ + + G L + +G E ++ + L + T G P P + ++
Sbjct: 307 GAKFSAEAARRVKAVFGCTLQQVFGXAEGLVNYTR-LDDPEEIIVNTQGKPXSPYDESRV 365
Query: 369 AEDESGSDAAG-VGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYII 427
+D G G + + P + Y+K + SFT DGF++TGD + DGY ++
Sbjct: 366 WDDHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVV 425
Query: 428 LGR 430
GR
Sbjct: 426 EGR 428
>pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|B Chain B, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|C Chain C, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|D Chain D, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
Length = 570
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 71/281 (25%), Positives = 115/281 (40%), Gaps = 47/281 (16%)
Query: 170 EDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQ-FLHCLPLH-HVHG-- 225
ED A +++TSG+TG+PKGV+ H+++ L + + D+ FL C P+ G
Sbjct: 214 EDVACVMFTSGSTGRPKGVMSPHRALTG--TYLGQDYAGFGPDEVFLQCSPVSWDAFGLE 271
Query: 226 LFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQ 285
LF ALL F R + Q + P+ GE + A GV ++Q
Sbjct: 272 LFGALL--------------FGARCVLQSGQNPDPLE---IGE-LVARHGV-----TMLQ 308
Query: 286 GYEAMDTELQXXXXXXXKQLRLMMCGSSALPLPVMQQ-------WETITGHRLLERYGMT 338
++ L + +R + G +P + + G+ E G T
Sbjct: 309 LSASLFNFLVDEVPEAFEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFT 368
Query: 339 EFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSLFKEYWKL 397
++ L G A +G PL G + + +D+ A G +GE+ V L Y
Sbjct: 369 THHAVVAGDLSG--TALPIGVPLAGKRAYVLDDDLKPAANGALGELYVAGAGLAHGYVSR 426
Query: 398 PKVTKDSFTADGF--------FKTGDTGKQDEDGYYIILGR 430
P +T + F AD F ++TGD ++ DG +GR
Sbjct: 427 PALTAERFVADPFAGPGGERMYRTGDLARRRADGVLEYVGR 467
>pdb|4GR4|A Chain A, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|B Chain B, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|C Chain C, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|D Chain D, Crystal Structure Of Slgn1deltaasub
Length = 469
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 71/281 (25%), Positives = 115/281 (40%), Gaps = 47/281 (16%)
Query: 170 EDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQ-FLHCLPLH-HVHG-- 225
ED A +++TSG+TG+PKGV+ H+++ L + + D+ FL C P+ G
Sbjct: 214 EDVACVMFTSGSTGRPKGVMSPHRALTG--TYLGQDYAGFGPDEVFLQCSPVSWDAFGLE 271
Query: 226 LFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQ 285
LF ALL F R + Q + P+ GE + A GV ++Q
Sbjct: 272 LFGALL--------------FGARCVLQSGQNPDPLE---IGE-LVARHGV-----TMLQ 308
Query: 286 GYEAMDTELQXXXXXXXKQLRLMMCGSSALPLPVMQQ-------WETITGHRLLERYGMT 338
++ L + +R + G +P + + G+ E G T
Sbjct: 309 LSASLFNFLVDEVPEAFEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFT 368
Query: 339 EFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSLFKEYWKL 397
++ L G A +G PL G + + +D+ A G +GE+ V L Y
Sbjct: 369 THHAVVAGDLSG--TALPIGVPLAGKRAYVLDDDLKPAANGALGELYVAGAGLAHGYVSR 426
Query: 398 PKVTKDSFTADGF--------FKTGDTGKQDEDGYYIILGR 430
P +T + F AD F ++TGD ++ DG +GR
Sbjct: 427 PALTAERFVADPFAGPGGERMYRTGDLARRRADGVLEYVGR 467
>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O82|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O83|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O83|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O84|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3O84|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3U16|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U16|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U17|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
pdb|3U17|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
Length = 544
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/269 (21%), Positives = 108/269 (40%), Gaps = 28/269 (10%)
Query: 169 GEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFN 228
++ A + G+TG PK + TH D V+ E S + L LP H L +
Sbjct: 190 ADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPHNFMLSS 249
Query: 229 -ALLAPLYAGATVEFMPK---FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLI 284
L L+AG V P + I QR + + + VP+ +
Sbjct: 250 PGALGVLHAGGCVVMAPNPEPLNCFSIIQRHQ-------------VNMASLVPSAVIMWL 296
Query: 285 QGYEAMDTELQXXXXXXXKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAI 344
+ ++Q L+L+ G ++ P + +Q + +L + +GM E ++
Sbjct: 297 EKAAQYKDQIQS--------LKLLQVGGASFPESLARQVPEVLNCKLQQVFGMAEGLVNY 348
Query: 345 SNPLRGARKAGTV-GNPLPGV-QVKIAEDESGSDAAG-VGEICVKSPSLFKEYWKLPKVT 401
+ + T G P+ ++KI +++ G +G + + P F Y++ P+
Sbjct: 349 TRLDDSDEQIFTTQGRPISSDDEIKIVDEQYREVPEGEIGMLATRGPYTFCGYYQSPEHN 408
Query: 402 KDSFTADGFFKTGDTGKQDEDGYYIILGR 430
F D ++ +GD ++ DG ++GR
Sbjct: 409 SQVFDEDNYYYSGDLVQRTPDGNLRVVGR 437
>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED,
SELENOMETHIONINE
Length = 504
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 75/273 (27%), Positives = 110/273 (40%), Gaps = 41/273 (15%)
Query: 172 PALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTE--AWEYTSADQFLHCLPLHHVHGLFNA 229
PA I YTSGTTG PK + ++ +++V + + + L PL+HV G F
Sbjct: 155 PAFIFYTSGTTGLPKAAIIPQRAAESRVLFXSTQVGLRHGRHNVVLGLXPLYHVVGFFAV 214
Query: 230 LLAPLYAGATV----EFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQ 285
L+A L T EF P +++ + Q E +T+ PT L
Sbjct: 215 LVAALALDGTYVVVEEFRPVDALQLVQQ--------------EQVTSLFATPTHLDALAA 260
Query: 286 GYEAMDTELQXXXXXXXKQLRLMMCGSSALPLPVMQQWETITGHRLLER---YGMTEFVM 342
+ L+ LR + + P V+ ET+ H E+ YG TE
Sbjct: 261 AAAHAGSSLK------LDSLRHVTFAGATXPDAVL---ETVHQHLPGEKVNIYGTTE--- 308
Query: 343 AISNPLRGARKAGTVGNPLPGVQVKIAEDESGSD---AAG-VGEICV-KSPSLFKEYWKL 397
A ++ K GT P +V+I G D A G GE+ V S S F Y
Sbjct: 309 AXNSLYXRQPKTGTEXAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQ 368
Query: 398 PKVTKDSFTADGFFKTGDTGKQDEDGYYIILGR 430
P+ T + DG+++T D +G ILGR
Sbjct: 369 PQATAEKLQ-DGWYRTSDVAVWTPEGTVRILGR 400
>pdb|3L8C|A Chain A, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3L8C|B Chain B, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3LGX|A Chain A, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|B Chain B, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|C Chain C, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|D Chain D, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
Length = 521
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 74/365 (20%), Positives = 146/365 (40%), Gaps = 39/365 (10%)
Query: 78 SFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSG 137
+++ +A + SG +P+ + +L ++ + S++++ E++ ++ ++ S
Sbjct: 64 TYDMLATFVALTKSGHAYIPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTIEGISLVSL 123
Query: 138 AKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDA 197
++ E+ + E+ +G+D I++TSGTTG+PKGV +H ++ +
Sbjct: 124 SEI-----------ESAKLAEMPYERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLS 172
Query: 198 QVQMLTE--AWEYTSADQFLHCLPLHHVHGLFNALLAPLYA-GATVEFMPKFSVRGIWQR 254
+ E A++ Q L P + L AP A G T+ +PK V Q
Sbjct: 173 FTNWMIEDAAFDVPKQPQMLAQPP--YSFDLSVMYWAPTLALGGTLFALPKELVADFKQL 230
Query: 255 WRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQXXXXXXXKQLRLMMCGSSA 314
+ A + +T P+ + + ++ L + +
Sbjct: 231 FT-------TIAQLPVGIWTSTPSFADMAMLSDDFCQAKMPALTHFYFDGEELTVSTARK 283
Query: 315 LPLPVMQQWETITGHRLLERYGMTEFVMA-----ISNPLRGARKAGTVGNPLPGVQVKIA 369
L +E +++ YG TE +A I+ + +G P P I
Sbjct: 284 L-------FERFPSAKIINAYGPTEATVALSAIEITREMVDNYTRLPIGYPKPDSPTYII 336
Query: 370 EDESGSDAAG-VGEICVKSPSLFKEYWKLPKVTKD---SFTADGFFKTGDTGKQDEDGYY 425
+++ ++G GEI V P++ K Y P+ T + +F + TGD G ED
Sbjct: 337 DEDGKELSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTEDNIL 396
Query: 426 IILGR 430
+ GR
Sbjct: 397 LYGGR 401
>pdb|3E7W|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
pdb|3E7X|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
Length = 511
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 77/363 (21%), Positives = 147/363 (40%), Gaps = 46/363 (12%)
Query: 82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFS 141
+ LG+ +G +P+ LS P + ++ S +++ + V +
Sbjct: 66 IVSFLGSVKAGHPYIPVDLSIPSERIAKIIESSGAELLIHAAGLS--IDAVGQQ------ 117
Query: 142 LIPPVPNVSSETTVFDQSQAEKMDGQRGEDPAL-IVYTSGTTGKPKGVVHTHKSIDAQVQ 200
+ VS+E + ++ + D E I+YTSG+TG PKGV + ++ +
Sbjct: 118 ----IQTVSAEELLENEGGSVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTD 173
Query: 201 MLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSV---RGIWQRWRE 257
+ + + FL+ P + + L L +G T+ + K +V + +++ ++
Sbjct: 174 WICADFPVSGGKIFLNQAPFSFDLSVMD-LYPCLQSGGTLHCVTKDAVNKPKVLFEELKK 232
Query: 258 SYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQXXXXXXXKQLRLMMCGSSALPL 317
S + +T P+ + MD M CG LP+
Sbjct: 233 S----------GLNVWTSTPSFVQMCL-----MDPGFSQDLLPHAD--TFMFCGE-VLPV 274
Query: 318 PVMQQW-ETITGHRLLERYGMTEFVMA-----ISNPLRGARKAGTVGNPLPGVQVKIAED 371
V + E ++ YG TE +A I+N + ++ VG P + + I ++
Sbjct: 275 SVAKALLERFPKAKIFNTYGPTEATVAVTSVEITNDVISRSESLPVGFAKPDMNIFIMDE 334
Query: 372 ESGSDAAG-VGEICVKSPSLFKEYWKLPKVTKDS-FTADG--FFKTGDTGKQDEDGYYII 427
E G GEI + PS+ + Y P++T+ + F+ +G ++TGD G +DG
Sbjct: 335 EGQPLPEGEKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGF-IQDGQIFC 393
Query: 428 LGR 430
GR
Sbjct: 394 QGR 396
>pdb|3DHV|A Chain A, Crystal Structure Of Dlta Protein In Complex With
D-Alanine Adenylate
Length = 512
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 83/366 (22%), Positives = 145/366 (39%), Gaps = 46/366 (12%)
Query: 80 EFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTE--DYREVLQNVASKSG 137
E + LG +G +P+ LS P + + +S ++LS ++ + S+
Sbjct: 63 EMIINFLGCVKAGHAYIPVDLSIPADRVQRIAENSGAKLLLSATAVTVTDLPVRIVSEDN 122
Query: 138 AK---FSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKS 194
K F+ PN E V +G++ I+YTSG+TG PKGV T+
Sbjct: 123 LKDIFFTHKGNTPN--PEHAV------------KGDENFYIIYTSGSTGNPKGVQITYNC 168
Query: 195 IDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQR 254
+ + + E + + FL+ P + + + L G T+ + K + R
Sbjct: 169 LVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVMD-IYPSLVTGGTLWAIDK----DMIAR 223
Query: 255 WRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQXXXXXXXKQLRLMMCGSSA 314
++ + + I +T P+ + M+ K + CG
Sbjct: 224 PKDLF---ASLEQSDIQVWTSTPSFAEMCL-----MEASFSESMLPNMKT--FLFCG-EV 272
Query: 315 LPLPVMQQW-ETITGHRLLERYGMTEFVMA-----ISNPLRGARKAGTVGNPLPGVQVKI 368
LP V ++ E ++ YG TE +A ++ + K+ VG ++ I
Sbjct: 273 LPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLDQYKSLPVGYCKSDCRLLI 332
Query: 369 -AEDESGSDAAGVGEICVKSPSLFKEYWKLPKVTKDSFTA-DG--FFKTGDTGKQDEDGY 424
ED + + GEI + PS+ Y P++T+ +FT DG +KTGD G E+G
Sbjct: 333 MKEDGTIAPDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYV-ENGL 391
Query: 425 YIILGR 430
GR
Sbjct: 392 LFYNGR 397
>pdb|3FCC|A Chain A, Crystal Structure Of Dlta Protein In Complex With Atp And
Magnesium
pdb|3FCE|A Chain A, Crystal Structure Of Bacillus Cereus D-Alanyl Carrier
Protein Ligase Dlta In Complex With Atp: Implications
For Adenylation Mechanism
Length = 512
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 83/366 (22%), Positives = 145/366 (39%), Gaps = 46/366 (12%)
Query: 80 EFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTE--DYREVLQNVASKSG 137
E + LG +G +P+ LS P + + +S ++LS ++ + S+
Sbjct: 63 EMIINFLGCVKAGHAYIPVDLSIPADRVQRIAENSGAKLLLSATAVTVTDLPVRIVSEDN 122
Query: 138 AK---FSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKS 194
K F+ PN E V +G++ I+YTSG+TG PKGV T+
Sbjct: 123 LKDIFFTHKGNTPN--PEHAV------------KGDENFYIIYTSGSTGNPKGVQITYNC 168
Query: 195 IDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQR 254
+ + + E + + FL+ P + + + L G T+ + K + R
Sbjct: 169 LVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVMD-IYPSLVTGGTLWAIDK----DMIAR 223
Query: 255 WRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQXXXXXXXKQLRLMMCGSSA 314
++ + + I +T P+ + M+ K + CG
Sbjct: 224 PKDLF---ASLEQSDIQVWTSTPSFAEMCL-----MEASFSESMLPNMKT--FLFCG-EV 272
Query: 315 LPLPVMQQW-ETITGHRLLERYGMTEFVMA-----ISNPLRGARKAGTVGNPLPGVQVKI 368
LP V ++ E ++ YG TE +A ++ + K+ VG ++ I
Sbjct: 273 LPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLDQYKSLPVGYCKSDCRLLI 332
Query: 369 -AEDESGSDAAGVGEICVKSPSLFKEYWKLPKVTKDSFTA-DG--FFKTGDTGKQDEDGY 424
ED + + GEI + PS+ Y P++T+ +FT DG +KTGD G E+G
Sbjct: 333 MKEDGTIAPDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYV-ENGL 391
Query: 425 YIILGR 430
GR
Sbjct: 392 LFYNGR 397
>pdb|1SSW|A Chain A, Crystal Structure Of Phage T4 Lysozyme Mutant
Y24aY25AT26AI27AC54TC97A
Length = 164
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 21/28 (75%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G+ AAG+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGAAAAGIGHLLTKSPSL 39
>pdb|216L|A Chain A, Structural Basis Of Alpha-Helix Propensity At Two Sites In
T4 Lysozyme
pdb|216L|B Chain B, Structural Basis Of Alpha-Helix Propensity At Two Sites In
T4 Lysozyme
Length = 164
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSLFKEYWKLPK 399
G+++KI +D G G+G + KSPSL W+L K
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKWELDK 48
>pdb|2KBB|A Chain A, Nmr Structure Of The Talin Rod Domain, 1655-1822
pdb|2KGX|A Chain A, Haddock Structure Of The Talin F3 Domain In Complex With
Talin 1655-1822
Length = 174
Score = 32.0 bits (71), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 175 IVYTSGTTG-KPKGVVHTHKSIDAQVQMLTEAWE 207
++YT+ G PK HT ++++ VQM+TEA E
Sbjct: 127 LLYTAKEAGGNPKQAAHTQEALEEAVQMMTEAVE 160
>pdb|3ITE|A Chain A, The Third Adenylation Domain Of The Fungal Sidn Non-
Ribosomal Peptide Synthetase
pdb|3ITE|B Chain B, The Third Adenylation Domain Of The Fungal Sidn Non-
Ribosomal Peptide Synthetase
Length = 562
Score = 31.6 bits (70), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 59/151 (39%), Gaps = 34/151 (22%)
Query: 68 GARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYRE 127
G I + S A ++G SG VP+ P ++ DS + ++ +
Sbjct: 79 GRAIAVSLDRSLIAFAIIVGIXKSGNTYVPIEAGLPNDRKSFLLRDSRAAXAFVCDNNFD 138
Query: 128 VLQNVASKSGAKFSLIPPVPNVSSETTVFD---QSQAEKMDGQRGED---------PALI 175
++ +PP ET V D QS E + Q D A +
Sbjct: 139 GVE------------LPP------ETKVLDTKNQSFIENLSTQDTSDILNNYPENLDAYL 180
Query: 176 VYTSGTTGKPKGVVHTHKSIDAQVQMLTEAW 206
+YTSG+TG PKGV + ++ + ++AW
Sbjct: 181 LYTSGSTGTPKGVRVSRHNLSS----FSDAW 207
>pdb|2W1J|A Chain A, Crystal Structure Of Sortase C-1 (Srtc-1) From
Streptococcus Pneumoniae
pdb|2W1J|B Chain B, Crystal Structure Of Sortase C-1 (Srtc-1) From
Streptococcus Pneumoniae
Length = 212
Score = 31.6 bits (70), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
Query: 233 PLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPT--MYTRLIQ 285
P+YAG E + + G S P+ GN ITA TG+PT M+T L +
Sbjct: 79 PVYAGTAEEVLQQ----GAGHLEGTSLPIGGNSTHAVITAHTGLPTAKMFTDLTK 129
>pdb|4F7G|B Chain B, Crystal Structure Of Talin Autoinhibition Complex
Length = 216
Score = 31.6 bits (70), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 175 IVYTSGTTG-KPKGVVHTHKSIDAQVQMLTEAWE 207
++YT+ G PK HT ++++ VQM+TEA E
Sbjct: 144 LLYTAKEAGGNPKQAAHTQEALEEAVQMMTEAVE 177
>pdb|249L|A Chain A, The Response Of T4 Lysozyme To Large-To-Small
Substitutions Within The Core And Its Relation To The
Hydrophobic Effect
Length = 164
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G AG+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTAGIGHLLTKSPSL 39
>pdb|240L|A Chain A, The Response Of T4 Lysozyme To Large-To-Small
Substitutions Within The Core And Its Relation To The
Hydrophobic Effect
Length = 164
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G AG+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTAGIGHLLTKSPSL 39
>pdb|2WTS|A Chain A, Crystal Structure Of Sortase C-1 (Srtc-1) Mutant H131d
From S. Pneumoniae
pdb|2WTS|B Chain B, Crystal Structure Of Sortase C-1 (Srtc-1) Mutant H131d
From S. Pneumoniae
Length = 213
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
Query: 233 PLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPT--MYTRLIQ 285
P+YAG E + + G S P+ GN ITA TG+PT M+T L +
Sbjct: 80 PVYAGTAEEVLQQ----GAGHLEGTSLPIGGNSTHAVITADTGLPTAKMFTDLTK 130
>pdb|4DG8|A Chain A, Structure Of Pa1221, An Nrps Protein Containing
Adenylation And Pcp Domains
pdb|4DG9|A Chain A, Structure Of Holo-Pa1221, An Nrps Protein Containing
Adenylation And Pcp Domains Bound To Vinylsulfonamide
Inhibitor
Length = 620
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 173 ALIVYTSGTTGKPKGVVHTHKSI 195
A I ++SGTTG+PK + TH I
Sbjct: 167 AYINFSSGTTGRPKAIACTHAGI 189
>pdb|3RZE|A Chain A, Structure Of The Human Histamine H1 Receptor In Complex
With Doxepin
Length = 452
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 213 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 240
>pdb|137L|A Chain A, Structural Basis Of Amino Acid Alpha Helix Propensity
pdb|137L|B Chain B, Structural Basis Of Amino Acid Alpha Helix Propensity
Length = 164
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSLFKEYWKLPK 399
G+++KI +D G G+G + KSPSL ++L K
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKFELDK 48
>pdb|3O0P|A Chain A, Pilus-Related Sortase C Of Group B Streptococcus
Length = 216
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Query: 233 PLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVP 277
P++AG++ E + K G S P+ GN ITA +G+P
Sbjct: 83 PIFAGSSQEVLSK----GAGHLEGTSLPIGGNSTHTVITAHSGIP 123
>pdb|248L|A Chain A, The Response Of T4 Lysozyme To Large-To-Small
Substitutions Within The Core And Its Relation To The
Hydrophobic Effect
Length = 164
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G AG G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTAGAGHLLTKSPSL 39
>pdb|1EPY|A Chain A, T4 Lysozyme Mutant, T21hC54TC97AQ141HT142H
Length = 164
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDHEGYYTIGIGHLLTKSPSL 39
>pdb|4DAJ|A Chain A, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|B Chain B, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|C Chain C, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|D Chain D, Structure Of The M3 Muscarinic Acetylcholine Receptor
Length = 479
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 216 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 243
>pdb|3UON|A Chain A, Structure Of The Human M2 Muscarinic Acetylcholine
Receptor Bound To An Antagonist
Length = 467
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 228 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 255
>pdb|259L|A Chain A, An Adaptable Metal-Binding Site Engineered Into T4
Lysozyme
pdb|257L|A Chain A, An Adaptable Metal-Binding Site Engineered Into T4
Lysozyme
pdb|258L|A Chain A, An Adaptable Metal-Binding Site Engineered Into T4
Lysozyme
pdb|260L|A Chain A, An Adaptable Metal-Binding Site Engineered Into T4
Lysozyme
Length = 164
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDHEGYYTIGIGHLLTKSPSL 39
>pdb|4GRV|A Chain A, The Crystal Structure Of The Neurotensin Receptor Nts1 In
Complex With Neurotensin (8-13)
Length = 510
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 247 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 274
>pdb|3V2W|A Chain A, Crystal Structure Of A Lipid G Protein-Coupled Receptor At
3.35a
pdb|3V2Y|A Chain A, Crystal Structure Of A Lipid G Protein-Coupled Receptor At
2.80a
Length = 520
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 260 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 287
>pdb|131L|A Chain A, Structures Of Randomly Generated Mutants Of T4 Lysozyme
Show That Protein Stability Can Be Enhanced By
Relaxation Of Strain And By Improved Hydrogen Bonding
Via Bound Solvent
Length = 164
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G + G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYSIGIGHLLTKSPSL 39
>pdb|209L|A Chain A, Protein Structure Plasticity Exemplified By Insertion And
Deletion Mutants In T4 Lysozyme
Length = 167
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1JTM|A Chain A, Alternative Structures Of A Sequence Extended T4 Lysozyme
Show That The Highly Conserved Beta-Sheet Has Weak
Intrinsic Folding Propensity
pdb|1JTN|A Chain A, Alternative Structures Of A Sequence Extended T4 Lysozyme
Show That The Highly Conserved Beta-Sheet Region Has
Weak Intrinsic Folding Propensity
pdb|1JTN|B Chain B, Alternative Structures Of A Sequence Extended T4 Lysozyme
Show That The Highly Conserved Beta-Sheet Region Has
Weak Intrinsic Folding Propensity
Length = 178
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1L64|A Chain A, Tolerance Of T4 Lysozyme To Multiple Xaa (Right Arrow) Ala
Substitutions: A Polyalanine Alpha-Helix Containing Ten
Consecutive Alanines
Length = 164
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1PQI|A Chain A, T4 Lysozyme Core Repacking Mutant I118lCORE7TA
Length = 164
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1TLA|A Chain A, Hydrophobic Core Repacking And Aromatic-Aromatic
Interaction In The Thermostable Mutant Of T4 Lysozyme
Ser 117 (Right Arrow) Phe
Length = 164
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|3SB6|A Chain A, Cu-Mediated Dimer Of T4 Lysozyme D61hK65HR76HR80H BY
SYNTHETIC Symmetrization
pdb|3SB6|B Chain B, Cu-Mediated Dimer Of T4 Lysozyme D61hK65HR76HR80H BY
SYNTHETIC Symmetrization
pdb|3SB7|A Chain A, Cu-Mediated Trimer Of T4 Lysozyme D61hK65HR76HR80H BY
SYNTHETIC Symmetrization
pdb|3SB7|B Chain B, Cu-Mediated Trimer Of T4 Lysozyme D61hK65HR76HR80H BY
SYNTHETIC Symmetrization
Length = 165
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 15 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 42
>pdb|1QT6|A Chain A, E11h Mutant Of T4 Lysozyme
Length = 164
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1LWG|A Chain A, Multiple Methionine Substitutions Are Tolerated In T4
Lysozyme And Have Coupled Effects On Folding And
Stability
Length = 164
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1D2W|A Chain A, N-Terminal Domain Core Methionine Mutation
Length = 164
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTMGIGHLLTKSPSL 39
>pdb|4GS5|A Chain A, The Crystal Structure Of Acyl-Coa Synthetase
(Amp-Forming)AMP-Acid Ligase Ii-Like Protein From
Dyadobacter Fermentans Dsm 18053
Length = 358
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 26/53 (49%)
Query: 174 LIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGL 226
+++TSG+TG PK + T + A +A + L CL + ++ GL
Sbjct: 41 FVLHTSGSTGXPKPITVTRAQLAASAAXTGKALSLGPGTRALVCLNVGYIAGL 93
>pdb|110L|A Chain A, Structural Basis Of Alpha-Helix Propensity At Two Sites In
T4 Lysozyme
Length = 164
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|195L|A Chain A, Thermodynamic And Structural Compensation In "size-Switch"
Core-Repacking Variants Of T4 Lysozyme
Length = 164
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|3OE0|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Cyclic Peptide Antagonist Cvx15
pdb|3OE9|A Chain A, Crystal Structure Of The Chemokine Cxcr4 Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE9|B Chain B, Crystal Structure Of The Chemokine Cxcr4 Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
Length = 499
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 249 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 276
>pdb|1P6Y|A Chain A, T4 Lysozyme Core Repacking Mutant M120y/ta
Length = 164
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|201L|A Chain A, How Amino-Acid Insertions Are Allowed In An Alpha-Helix Of
T4 Lysozyme
pdb|201L|B Chain B, How Amino-Acid Insertions Are Allowed In An Alpha-Helix Of
T4 Lysozyme
Length = 166
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|3PDS|A Chain A, Irreversible Agonist-Beta2 Adrenoceptor Complex
Length = 458
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 217 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 244
>pdb|3D4S|A Chain A, Cholesterol Bound Form Of Human Beta2 Adrenergic Receptor.
pdb|3NY8|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Inverse Agonist Ici 118,551
pdb|3NY9|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With A Novel Inverse Agonist
pdb|3NYA|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Neutral Antagonist Alprenolol
Length = 490
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 249 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 276
>pdb|1QTH|A Chain A, The Introduction Of Strain And Its Effects On The
Structure And Stability Of T4 Lysozyme
pdb|1QTH|B Chain B, The Introduction Of Strain And Its Effects On The
Structure And Stability Of T4 Lysozyme
Length = 164
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|196L|A Chain A, Thermodynamic And Structural Compensation In "size-Switch"
Core-Repacking Variants Of T4 Lysozyme
Length = 164
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|146L|A Chain A, Role Of Backbone Flexibility In The Accommodation Of
Variants That Repack The Core Of T4 Lysozyme
Length = 164
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1L41|A Chain A, Contributions Of Engineered Surface Salt Bridges To The
Stability Of T4 Lysozyme Determined By Directed
Mutagenesis
Length = 164
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|128L|A Chain A, The Energetic Cost And The Structural Consequences Of
Burying A Hydroxyl Group Within The Core Of A Protein
Determined From Ala To Ser And Val To Thr Substitutions
In T4 Lysozyme
Length = 164
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1L80|A Chain A, Design And Structural Analysis Of Alternative Hydrophobic
Core Packing Arrangements In Bacteriophage T4 Lysozyme
Length = 164
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|126L|A Chain A, The Energetic Cost And The Structural Consequences Of
Burying A Hydroxyl Group Within The Core Of A Protein
Determined From Ala To Ser And Val To Thr Substitutions
In T4 Lysozyme
Length = 164
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|2QB0|B Chain B, Structure Of The 2tel Crystallization Module Fused To T4
Lysozyme With An Ala-Gly-Pro Linker.
pdb|2QB0|D Chain D, Structure Of The 2tel Crystallization Module Fused To T4
Lysozyme With An Ala-Gly-Pro Linker
Length = 241
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 91 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 118
>pdb|1L79|A Chain A, Design And Structural Analysis Of Alternative Hydrophobic
Core Packing Arrangements In Bacteriophage T4 Lysozyme
Length = 164
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1QTC|A Chain A, The Introduction Of Strain And Its Effects On The
Structure And Stability Of T4 Lysozyme
Length = 162
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|127L|A Chain A, The Energetic Cost And The Structural Consequences Of
Burying A Hydroxyl Group Within The Core Of A Protein
Determined From Ala To Ser And Val To Thr Substitutions
In T4 Lysozyme
Length = 164
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1CV6|A Chain A, T4 Lysozyme Mutant V149m
Length = 164
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1CV1|A Chain A, T4 Lysozyme Mutant V111m
Length = 164
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1CUQ|A Chain A, T4 Lysozyme Mutant V103m
Length = 164
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|3ODU|A Chain A, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In
Complex With Small Molecule Antagonist It1t
pdb|3ODU|B Chain B, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In
Complex With Small Molecule Antagonist It1t
pdb|3OE8|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE8|B Chain B, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE8|C Chain C, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
Length = 502
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 252 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 279
>pdb|1QT7|A Chain A, E11n Mutant Of T4 Lysozyme
Length = 164
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|145L|A Chain A, Role Of Backbone Flexibility In The Accommodation Of
Variants That Repack The Core Of T4 Lysozyme
Length = 164
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|129L|A Chain A, Structures Of Randomly Generated Mutants Of T4 Lysozyme
Show That Protein Stability Can Be Enhanced By
Relaxation Of Strain And By Improved Hydrogen Bonding
Via Bound Solvent
Length = 164
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1L76|A Chain A, Tolerance Of T4 Lysozyme To Proline Substitutions Within
The Long Interdomain Alpha-Helix Illustrates The
Adaptability Of Proteins To Potentially Destabilizing
Lesions
Length = 164
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1L55|A Chain A, Analysis Of The Interaction Between Charged Side Chains
And The Alpha-Helix Dipole Using Designed Thermostable
Mutants Of Phage T4 Lysozyme
Length = 164
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1CU3|A Chain A, T4 Lysozyme Mutant V87m
Length = 164
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1PQK|A Chain A, Repacking Of The Core Of T4 Lysozyme By Automated Design
pdb|1PQK|B Chain B, Repacking Of The Core Of T4 Lysozyme By Automated Design
pdb|1PQK|C Chain C, Repacking Of The Core Of T4 Lysozyme By Automated Design
Length = 164
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1PQJ|A Chain A, T4 Lysozyme Core Repacking Mutant A111vCORE10TA
Length = 164
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|114L|A Chain A, Structural Basis Of Alpha-Helix Propensity At Two Sites In
T4 Lysozyme
Length = 164
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1CU0|A Chain A, T4 Lysozyme Mutant I78m
Length = 164
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1G1V|A Chain A, T4 Lysozyme Mutant C54tC97AI58T
Length = 164
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1D3F|A Chain A, N-Terminal Domain Core Methionine Mutation
Length = 164
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1G1W|A Chain A, T4 Lysozyme Mutant C54tC97AQ105M
Length = 164
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1D2Y|A Chain A, N-Terminal Domain Core Methionine Mutation
Length = 164
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1CUP|A Chain A, Methionine Core Mutant Of T4 Lysozyme
Length = 164
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1QTD|A Chain A, The Introduction Of Strain And Its Effects On The
Structure And Stability Of T4 Lysozyme
Length = 162
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1P64|A Chain A, T4 Lysozyme Core Repacking Mutant L133fTA
Length = 164
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|108L|A Chain A, Structural Basis Of Alpha-Helix Propensity At Two Sites In
T4 Lysozyme
Length = 164
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|111L|A Chain A, Structural Basis Of Alpha-Helix Propensity At Two Sites In
T4 Lysozyme
Length = 164
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1L91|A Chain A, Similar Hydrophobic Replacements Of Leu 99 And Phe 153
Within The Core Of T4 Lysozyme Have Different Structural
And Thermodynamic Consequences
Length = 164
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1L65|A Chain A, Tolerance Of T4 Lysozyme To Multiple Xaa (Right Arrow) Ala
Substitutions: A Polyalanine Alpha-Helix Containing Ten
Consecutive Alanines
Length = 164
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1QS5|A Chain A, The Introduction Of Strain And Its Effects On The
Structure And Stability Of T4 Lysozyme
Length = 162
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|113L|A Chain A, Structural Basis Of Alpha-Helix Propensity At Two Sites In
T4 Lysozyme
Length = 164
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|4DJH|A Chain A, Structure Of The Human Kappa Opioid Receptor In Complex
With Jdtic
pdb|4DJH|B Chain B, Structure Of The Human Kappa Opioid Receptor In Complex
With Jdtic
Length = 480
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 235 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 262
>pdb|3SB8|A Chain A, Cu-Mediated Dimer Of T4 Lysozyme D61hK65H BY SYNTHETIC
SYMMETRIZATION
pdb|3SB8|B Chain B, Cu-Mediated Dimer Of T4 Lysozyme D61hK65H BY SYNTHETIC
SYMMETRIZATION
pdb|3SB8|C Chain C, Cu-Mediated Dimer Of T4 Lysozyme D61hK65H BY SYNTHETIC
SYMMETRIZATION
Length = 165
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 15 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 42
>pdb|3OE6|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In I222
Spacegroup
Length = 508
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 252 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 279
>pdb|171L|A Chain A, Protein Flexibility And Adaptability Seen In 25 Crystal
Forms Of T4 Lysozyme
Length = 164
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1P37|A Chain A, T4 Lysozyme Core Repacking Back-Revertant L102mCORE10
Length = 164
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1L0K|A Chain A, Methionine Core Mutant Of T4 Lysozyme
Length = 162
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|233L|A Chain A, T4 Lysozyme Mutant M120l
Length = 164
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|141L|A Chain A, Role Of Backbone Flexibility In The Accommodation Of
Variants That Repack The Core Of T4 Lysozyme
Length = 164
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1L77|A Chain A, Design And Structural Analysis Of Alternative Hydrophobic
Core Packing Arrangements In Bacteriophage T4 Lysozyme
Length = 164
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|230L|A Chain A, T4 Lysozyme Mutant M6l
Length = 164
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|234L|A Chain A, T4 Lysozyme Mutant M106l
Length = 164
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1L81|A Chain A, Design And Structural Analysis Of Alternative Hydrophobic
Core Packing Arrangements In Bacteriophage T4 Lysozyme
Length = 164
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1P2L|A Chain A, T4 Lysozyme Core Repacking Mutant V87iTA
Length = 164
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1P7S|A Chain A, T4 Lysozyme Core Repacking Mutant V103iTA
Length = 164
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1D3J|A Chain A, N-Terminal Domain Core Methionine Mutation
Length = 164
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|123L|A Chain A, The Energetic Cost And The Structural Consequences Of
Burying A Hydroxyl Group Within The Core Of A Protein
Determined From Ala To Ser And Val To Thr Substitutions
In T4 Lysozyme
Length = 164
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1CV5|A Chain A, T4 Lysozyme Mutant L133m
Length = 164
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|119L|A Chain A, The Energetic Cost And The Structural Consequences Of
Burying A Hydroxyl Group Within The Core Of A Protein
Determined From Ala To Ser And Val To Thr Substitutions
In T4 Lysozyme
Length = 164
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1L93|A Chain A, Similar Hydrophobic Replacements Of Leu 99 And Phe 153
Within The Core Of T4 Lysozyme Have Different Structural
And Thermodynamic Consequences
Length = 164
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1L82|A Chain A, Design And Structural Analysis Of Alternative Hydrophobic
Core Packing Arrangements In Bacteriophage T4 Lysozyme
Length = 164
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1D3M|A Chain A, Methionine Core Mutation
Length = 164
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|210L|A Chain A, Protein Structure Plasticity Exemplified By Insertion And
Deletion Mutants In T4 Lysozyme
Length = 163
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1CV4|A Chain A, T4 Lysozyme Mutant L118m
Length = 164
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|125L|A Chain A, The Energetic Cost And The Structural Consequences Of
Burying A Hydroxyl Group Within The Core Of A Protein
Determined From Ala To Ser And Val To Thr Substitutions
In T4 Lysozyme
Length = 164
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1CU5|A Chain A, T4 Lysozyme Mutant L91m
Length = 164
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|118L|A Chain A, The Energetic Cost And The Structural Consequences Of
Burying A Hydroxyl Group Within The Core Of A Protein
Determined From Ala To Ser And Val To Thr Substitutions
In T4 Lysozyme
Length = 164
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|2L78|A Chain A, Design And Structural Analysis Of Alternative Hydrophobic
Core Packing Arrangements In Bacteriophage T4 Lysozyme
Length = 164
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|120L|A Chain A, The Energetic Cost And The Structural Consequences Of
Burying A Hydroxyl Group Within The Core Of A Protein
Determined From Ala To Ser And Val To Thr Substitutions
In T4 Lysozyme
Length = 164
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|224L|A Chain A, The Energetic Cost And The Structural Consequences Of
Burying A Hydroxyl Group Within The Core Of A Protein
Determined From Ala To Ser And Val To Thr Substitutions
In T4 Lysozyme
Length = 164
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1CV3|A Chain A, T4 Lysozyme Mutant L121m
Length = 164
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|122L|A Chain A, The Energetic Cost And The Structural Consequences Of
Burying A Hydroxyl Group Within The Core Of A Protein
Determined From Ala To Ser And Val To Thr Substitutions
In T4 Lysozyme
Length = 164
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1L59|A Chain A, Analysis Of The Interaction Between Charged Side Chains
And The Alpha-Helix Dipole Using Designed Thermostable
Mutants Of Phage T4 Lysozyme
Length = 164
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|206L|A Chain A, Phage T4 Lysozyme
Length = 164
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1LYG|A Chain A, Dissection Of Helix Capping In T4 Lysozyme By Structural
And Thermodynamic Analysis Of Six Amino Acid
Substitutions At Thr 59
Length = 164
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1G0Q|A Chain A, Crystal Structure Of T4 Lysozyme Mutant V149i
Length = 164
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|199L|A Chain A, Thermodynamic And Structural Compensation In "size-Switch"
Core-Repacking Variants Of T4 Lysozyme
Length = 164
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|221L|A Chain A, The Energetic Cost And The Structural Consequences Of
Burying A Hydroxyl Group Within The Core Of A Protein
Determined From Ala To Ser And Val To Thr Substitutions
In T4 Lysozyme
Length = 164
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1CU2|A Chain A, T4 Lysozyme Mutant L84m
Length = 164
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1P2R|A Chain A, T4 Lysozyme Core Repacking Mutant I78vTA
Length = 164
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1PQD|A Chain A, T4 Lysozyme Core Repacking Mutant Core10TA
Length = 164
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1P36|A Chain A, T4 Lyoszyme Core Repacking Mutant I100vTA
Length = 164
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1L68|A Chain A, Tolerance Of T4 Lysozyme To Multiple Xaa (Right Arrow) Ala
Substitutions: A Polyalanine Alpha-Helix Containing Ten
Consecutive Alanines
Length = 164
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|109L|A Chain A, Structural Basis Of Alpha-Helix Propensity At Two Sites In
T4 Lysozyme
Length = 164
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|112L|A Chain A, Structural Basis Of Alpha-Helix Propensity At Two Sites In
T4 Lysozyme
Length = 164
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|115L|A Chain A, Structural Basis Of Alpha-Helix Propensity At Two Sites In
T4 Lysozyme
Length = 164
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1G06|A Chain A, Crystal Structure Of T4 Lysozyme Mutant V149s
Length = 164
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|2RH1|A Chain A, High Resolution Crystal Structure Of Human B2-Adrenergic G
Protein- Coupled Receptor
Length = 500
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 248 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 275
>pdb|144L|A Chain A, Role Of Backbone Flexibility In The Accommodation Of
Variants That Repack The Core Of T4 Lysozyme
Length = 164
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|165L|A Chain A, Control Of Enzyme Activity By An Engineered Disulfide Bond
Length = 164
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1C6P|A Chain A, T4 Lysozyme Mutant C54tC97A IN THE PRESENCE OF 8 ATM ARGON
pdb|1C6Q|A Chain A, T4 Lysozyme Mutant C54tC97A IN THE PRESENCE OF 8 ATM
Krypton
pdb|1C6T|A Chain A, T4 Lysozyme Mutant C54tC97A IN THE PRESENCE OF 8 ATM XENON
pdb|1LW9|A Chain A, Multiple Methionine Substitutions Are Tolerated In T4
Lysozyme And Have Coupled Effects On Folding And
Stability
pdb|2OE4|X Chain X, High Pressure Psuedo Wild Type T4 Lysozyme
pdb|2OE7|X Chain X, High-Pressure T4 Lysozyme
pdb|2OE9|X Chain X, High-Pressure Structure Of Pseudo-Wt T4 Lysozyme
pdb|2OEA|X Chain X, High-Pressure Structure Of Pseudo-Wt T4 Lysozyme
pdb|1L63|A Chain A, Analysis Of The Interaction Between Charged Side Chains
And The Alpha-Helix Dipole Using Designed Thermostable
Mutants Of Phage T4 Lysozyme
pdb|219L|A Chain A, Protein Structure Plasticity Exemplified By Insertion And
Deletion Mutants In T4 Lysozyme
Length = 164
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|237L|A Chain A, The Response Of T4 Lysozyme To Large-To-Small
Substitutions Within The Core And Its Relation To The
Hydrophobic Effect
Length = 164
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|235L|A Chain A, The Response Of T4 Lysozyme To Large-To-Small
Substitutions Within The Core And Its Relation To The
Hydrophobic Effect
Length = 164
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|198L|A Chain A, Thermodynamic And Structural Compensation In "size-Switch"
Core-Repacking Variants Of T4 Lysozyme
Length = 164
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|236L|A Chain A, The Response Of T4 Lysozyme To Large-To-Small
Substitutions Within The Core And Its Relation To The
Hydrophobic Effect
Length = 164
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|238L|A Chain A, The Response Of T4 Lysozyme To Large-To-Small
Substitutions Within The Core And Its Relation To The
Hydrophobic Effect
Length = 164
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1P3N|A Chain A, Core Redesign Back-Revertant I103vCORE10
Length = 164
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|3P0G|A Chain A, Structure Of A Nanobody-Stabilized Active State Of The
Beta2 Adrenoceptor
Length = 501
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 249 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 276
>pdb|1PQM|A Chain A, T4 Lysozyme Core Repacking Mutant V149iT152VTA
Length = 164
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1KS3|A Chain A, Methionine Core Mutant Of T4 Lysozyme
Length = 162
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1G0M|A Chain A, Crystal Structure Of T4 Lysozyme Mutant T152i
Length = 164
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1G0P|A Chain A, Crystal Structure Of T4 Lysozyme Mutant V149g
Length = 164
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|162L|A Chain A, Control Of Enzyme Activity By An Engineered Disulfide Bond
Length = 164
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|242L|A Chain A, The Response Of T4 Lysozyme To Large-To-Small
Substitutions Within The Core And Its Relation To The
Hydrophobic Effect
Length = 164
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|243L|A Chain A, The Response Of T4 Lysozyme To Large-To-Small
Substitutions Within The Core And Its Relation To The
Hydrophobic Effect
Length = 164
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1CTW|A Chain A, T4 Lysozyme Mutant I78a
Length = 164
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1LLH|A Chain A, Are Carboxy Terminii Of Helices Coded By The Local
Sequence Or By Tertiary Structure Contacts
Length = 164
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|244L|A Chain A, The Response Of T4 Lysozyme To Large-To-Small
Substitutions Within The Core And Its Relation To The
Hydrophobic Effect
Length = 164
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|163L|A Chain A, Control Of Enzyme Activity By An Engineered Disulfide Bond
Length = 164
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1P46|A Chain A, T4 Lysozyme Core Repacking Mutant M106iTA
Length = 164
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|218L|A Chain A, Protein Structure Plasticity Exemplified By Insertion And
Deletion Mutants In T4 Lysozyme
Length = 165
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1QUG|A Chain A, E108v Mutant Of T4 Lysozyme
Length = 162
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1L66|A Chain A, Tolerance Of T4 Lysozyme To Multiple Xaa (Right Arrow) Ala
Substitutions: A Polyalanine Alpha-Helix Containing Ten
Consecutive Alanines
Length = 164
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|214L|A Chain A, Protein Structure Plasticity Exemplified By Insertion And
Deletion Mutants In T4 Lysozyme
Length = 165
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|213L|A Chain A, Protein Structure Plasticity Exemplified By Insertion And
Deletion Mutants In T4 Lysozyme
Length = 165
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|215L|A Chain A, Protein Structure Plasticity Exemplified By Insertion And
Deletion Mutants In T4 Lysozyme
Length = 165
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|102L|A Chain A, How Amino-Acid Insertions Are Allowed In An Alpha-Helix Of
T4 Lysozyme
Length = 165
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|211L|A Chain A, Protein Structure Plasticity Exemplified By Insertion And
Deletion Mutants In T4 Lysozyme
Length = 165
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1PQO|A Chain A, T4 Lysozyme Core Repacking Mutant L118iTA
Length = 164
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|107L|A Chain A, Structural Basis Of Alpha-Helix Propensity At Two Sites In
T4 Lysozyme
Length = 164
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1QTB|A Chain A, The Introduction Of Strain And Its Effects On The
Structure And Stability Of T4 Lysozyme
Length = 162
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1L92|A Chain A, Similar Hydrophobic Replacements Of Leu 99 And Phe 153
Within The Core Of T4 Lysozyme Have Different Structural
And Thermodynamic Consequences
Length = 164
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|161L|A Chain A, Control Of Enzyme Activity By An Engineered Disulfide Bond
Length = 164
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1QS9|A Chain A, The Introduction Of Strain And Its Effects On The
Structure And Stability Of T4 Lysozyme
Length = 162
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1I6S|A Chain A, T4 Lysozyme Mutant C54tC97AN101A
Length = 164
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|217L|A Chain A, Structural Basis Of Alpha-Helix Propensity At Two Sites In
T4 Lysozyme
pdb|3L64|A Chain A, T4 Lysozyme S44eWT
Length = 164
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|158L|A Chain A, Control Of Enzyme Activity By An Engineered Disulfide Bond
Length = 164
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1G0L|A Chain A, Crystal Structure Of T4 Lysozyme Mutant T152v
Length = 164
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1LYE|A Chain A, Dissection Of Helix Capping In T4 Lysozyme By Structural
And Thermodynamic Analysis Of Six Amino Acid
Substitutions At Thr 59
Length = 164
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1G0G|A Chain A, Crystal Structure Of T4 Lysozyme Mutant T152a
Length = 164
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1L94|A Chain A, Similar Hydrophobic Replacements Of Leu 99 And Phe 153
Within The Core Of T4 Lysozyme Have Different Structural
And Thermodynamic Consequences
Length = 164
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|155L|A Chain A, Control Of Enzyme Activity By An Engineered Disulfide Bond
Length = 164
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1LYJ|A Chain A, Dissection Of Helix Capping In T4 Lysozyme By Structural
And Thermodynamic Analysis Of Six Amino Acid
Substitutions At Thr 59
Length = 164
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|166L|A Chain A, Control Of Enzyme Activity By An Engineered Disulfide Bond
Length = 164
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|130L|A Chain A, Structures Of Randomly Generated Mutants Of T4 Lysozyme
Show That Protein Stability Can Be Enhanced By
Relaxation Of Strain And By Improved Hydrogen Bonding
Via Bound Solvent
Length = 164
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1LYF|A Chain A, Dissection Of Helix Capping In T4 Lysozyme By Structural
And Thermodynamic Analysis Of Six Amino Acid
Substitutions At Thr 59
Length = 164
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1G0J|A Chain A, Crystal Structure Of T4 Lysozyme Mutant T152s
Length = 164
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1KW5|A Chain A, Methionine Core Mutant Of T4 Lysozyme
Length = 162
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1KW7|A Chain A, Methionine Core Mutant Of T4 Lysozyme
Length = 162
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|164L|A Chain A, Control Of Enzyme Activity By An Engineered Disulfide Bond
Length = 164
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|232L|A Chain A, T4 Lysozyme Mutant M120k
Length = 164
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|231L|A Chain A, T4 Lysozyme Mutant M106k
Length = 164
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|245L|A Chain A, The Response Of T4 Lysozyme To Large-To-Small
Substitutions Within The Core And Its Relation To The
Hydrophobic Effect
Length = 164
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1JQU|A Chain A, Are Carboxy Terminii Of Helices Coded By The Local
Sequence Or By Tertiary Structure Contacts
pdb|1JQU|B Chain B, Are Carboxy Terminii Of Helices Coded By The Local
Sequence Or By Tertiary Structure Contacts
pdb|1JQU|C Chain C, Are Carboxy Terminii Of Helices Coded By The Local
Sequence Or By Tertiary Structure Contacts
pdb|1JQU|D Chain D, Are Carboxy Terminii Of Helices Coded By The Local
Sequence Or By Tertiary Structure Contacts
Length = 164
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|175L|A Chain A, Protein Flexibility And Adaptability Seen In 25 Crystal
Forms Of T4 Lysozyme
pdb|175L|B Chain B, Protein Flexibility And Adaptability Seen In 25 Crystal
Forms Of T4 Lysozyme
Length = 164
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|103L|A Chain A, How Amino-Acid Insertions Are Allowed In An Alpha-Helix Of
T4 Lysozyme
Length = 167
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|160L|A Chain A, Control Of Enzyme Activity By An Engineered Disulfide Bond
Length = 164
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|220L|A Chain A, Generating Ligand Binding Sites In T4 Lysozyme Using
Deficiency-Creating Substitutions
pdb|222L|A Chain A, Generating Ligand Binding Sites In T4 Lysozyme Using
Deficiency-Creating Substitutions
Length = 164
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1QSQ|A Chain A, Cavity Creating Mutation
Length = 164
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|229L|A Chain A, Generating Ligand Binding Sites In T4 Lysozyme Using
Deficiency-Creating Substitutions
Length = 164
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1L54|A Chain A, The Structural And Thermodynamic Consequences Of Burying A
Charged Residue Within The Hydrophobic Core Of T4
Lysozyme
Length = 164
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1KY1|A Chain A, Methionine Core Mutant Of T4 Lysozyme
Length = 162
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1C63|A Chain A, T4 Lysozyme Mutant C54tC97AL121A IN THE PRESENCE OF 8 ATM
Argon
pdb|1C64|A Chain A, T4 Lysozyme Mutant C54tC97AL121A IN THE PRESENCE OF 8 ATM
Krypton
pdb|1C65|A Chain A, T4 Lysozyme Mutant C54tC97AL121A IN THE PRESENCE OF 8 ATM
Xenon
pdb|200L|A Chain A, Thermodynamic And Structural Compensation In "size-Switch"
Core-Repacking Variants Of T4 Lysozyme
Length = 164
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1CU6|A Chain A, T4 Lysozyme Mutant L91a
Length = 164
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1LYI|A Chain A, Dissection Of Helix Capping In T4 Lysozyme By Structural
And Thermodynamic Analysis Of Six Amino Acid
Substitutions At Thr 59
Length = 164
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|247L|A Chain A, The Response Of T4 Lysozyme To Large-To-Small
Substitutions Within The Core And Its Relation To The
Hydrophobic Effect
Length = 164
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1CX7|A Chain A, T4 Lysozyme Methionine Core Mutant
Length = 164
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1CVK|A Chain A, T4 Lysozyme Mutant L118a
Length = 164
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1C6C|A Chain A, T4 Lysozyme Mutant C54tC97AL99A IN THE PRESENCE OF 16 ATM
Argon
pdb|1C6D|A Chain A, T4 Lysozyme Mutant C54tC97AL99A IN THE PRESENCE OF 16 ATM
Krypton
pdb|1C6E|A Chain A, T4 Lysozyme Mutant C54tC97AL99A IN THE PRESENCE OF 2 ATM
Xenon
pdb|1C6F|A Chain A, T4 Lysozyme Mutant C54tC97AL99A IN THE PRESENCE OF 32 ATM
Argon
pdb|1C6G|A Chain A, T4 Lysozyme Mutant C54tC97AL99A IN THE PRESENCE OF 4 ATM
Krypton
pdb|1C6H|A Chain A, T4 Lysozyme Mutant C54tC97AL99A IN THE PRESENCE OF 4 ATM
Xenon
pdb|1C6I|A Chain A, T4 Lysozyme Mutant C54tC97AL99A IN THE PRESENCE OF 8 ATM
Argon
pdb|1C6J|A Chain A, T4 Lysozyme Mutant C54tC97AL99A IN THE PRESENCE OF 8 ATM
Krypton
pdb|1C6K|A Chain A, T4 Lysozyme Mutant C54tC97AL99A IN THE PRESENCE OF 8 ATM
Xenon
pdb|181L|A Chain A, Specificity Of Ligand Binding In A Buried Non-Polar Cavity
Of T4 Lysozyme: Linkage Of Dynamics And Structural
Plasticity
pdb|182L|A Chain A, Specificity Of Ligand Binding In A Buried Non-Polar Cavity
Of T4 Lysozyme: Linkage Of Dynamics And Structural
Plasticity
pdb|183L|A Chain A, Specificity Of Ligand Binding In A Buried Non-Polar Cavity
Of T4 Lysozyme: Linkage Of Dynamics And Structural
Plasticity
pdb|184L|A Chain A, Specificity Of Ligand Binding In A Buried Non-Polar Cavity
Of T4 Lysozyme: Linkage Of Dynamics And Structural
Plasticity
pdb|185L|A Chain A, Specificity Of Ligand Binding In A Buried Non-Polar Cavity
Of T4 Lysozyme: Linkage Of Dynamics And Structural
Plasticity
pdb|186L|A Chain A, Specificity Of Ligand Binding In A Buried Non-Polar Cavity
Of T4 Lysozyme: Linkage Of Dynamics And Structural
Plasticity
pdb|187L|A Chain A, Specificity Of Ligand Binding In A Buried Non-Polar Cavity
Of T4 Lysozyme: Linkage Of Dynamics And Structural
Plasticity
pdb|188L|A Chain A, Specificity Of Ligand Binding In A Buried Non-Polar Cavity
Of T4 Lysozyme: Linkage Of Dynamics And Structural
Plasticity
pdb|1L83|A Chain A, A Cavity-Containing Mutant Of T4 Lysozyme Is Stabilized By
Buried Benzene
pdb|1L90|A Chain A, Similar Hydrophobic Replacements Of Leu 99 And Phe 153
Within The Core Of T4 Lysozyme Have Different Structural
And Thermodynamic Consequences
pdb|1NHB|A Chain A, Specificity Of Ligand Binding In A Buried Non-polar Cavity
Of T4 Lysozyme: Linkage Of Dynamics And Structural
Plasticity
pdb|3DMV|A Chain A, Free Of Ligand Binding In The Hydrophobic Cavity Of T4
Lysozyme L99a Mutant
pdb|3DMZ|A Chain A, Hexafluorobenzene Binding In The Hydrophobic Cavity Of T4
Lysozyme L99a Mutant
pdb|3DN0|A Chain A, Pentafluorobenzene Binding In The Hydrophobic Cavity Of T4
Lysozyme L99a Mutant
pdb|3DN1|A Chain A, Chloropentafluorobenzene Binding In The Hydrophobic Cavity
Of T4 Lysozyme L99a Mutant
pdb|3DN2|A Chain A, Bromopentafluorobenzene Binding In The Hydrophobic Cavity
Of T4 Lysozyme L99a Mutant
pdb|3DN3|A Chain A, Iodopentafluorobenzene Binding In The Hydrophobic Cavity
Of T4 Lysozyme L99a Mutant
pdb|3DN4|A Chain A, Iodobenzene Binding In The Hydrophobic Cavity Of T4
Lysozyme L99a Mutant
pdb|3DN6|A Chain A, 1,3,5-Trifluoro-2,4,6-Trichlorobenzene Binding In The
Hydrophobic Cavity Of T4 Lysozyme L99a Mutant
pdb|3DMX|A Chain A, Benzene Binding In The Hydrophobic Cavity Of T4 Lysozyme
L99a Mutant
pdb|3HH3|A Chain A, New Azaborine Compounds Bind To The T4 Lysozyme L99a
Cavity - 1,2-Dihydro-1,2-Azaborine
pdb|3HH4|A Chain A, New Azaborine Compounds Bind To The T4 Lysozyme L99a
Cavity - Benzene As Control
pdb|3HH5|A Chain A, New Azaborine Compounds Bind To The T4 Lysozyme L99a
Cavity - 1-Ethyl-2-Hydro-1,2-Azaborine
pdb|3HH6|A Chain A, New Azaborine Compounds Bind To The T4 Lysozyme L99a
Cavity -Ethylbenzene As Control
pdb|2LCB|A Chain A, Solution Structure Of A Minor And Transiently Formed State
Of A T4 Lysozyme Mutant
Length = 164
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|3SN6|R Chain R, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 514
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 26 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 53
>pdb|1L62|A Chain A, Analysis Of The Interaction Between Charged Side Chains
And The Alpha-Helix Dipole Using Designed Thermostable
Mutants Of Phage T4 Lysozyme
Length = 164
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1L67|A Chain A, Tolerance Of T4 Lysozyme To Multiple Xaa (Right Arrow) Ala
Substitutions: A Polyalanine Alpha-Helix Containing Ten
Consecutive Alanines
Length = 164
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|140L|A Chain A, Role Of Backbone Flexibility In The Accommodation Of
Variants That Repack The Core Of T4 Lysozyme
Length = 164
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1L39|A Chain A, Contributions Of Engineered Surface Salt Bridges To The
Stability Of T4 Lysozyme Determined By Directed
Mutagenesis
pdb|1L40|A Chain A, Contributions Of Engineered Surface Salt Bridges To The
Stability Of T4 Lysozyme Determined By Directed
Mutagenesis
Length = 164
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|159L|A Chain A, Control Of Enzyme Activity By An Engineered Disulfide Bond
Length = 164
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1L87|A Chain A, Similar Hydrophobic Replacements Of Leu 99 And Phe 153
Within The Core Of T4 Lysozyme Have Different Structural
And Thermodynamic Consequences
Length = 164
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1CV0|A Chain A, T4 Lysozyme Mutant F104m
Length = 164
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|197L|A Chain A, Thermodynamic And Structural Compensation In "size-Switch"
Core-Repacking Variants Of T4 Lysozyme
Length = 164
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|3SB9|A Chain A, Cu-Mediated Dimer Of T4 Lysozyme R76hR80H BY SYNTHETIC
SYMMETRIZATION
pdb|3SB9|B Chain B, Cu-Mediated Dimer Of T4 Lysozyme R76hR80H BY SYNTHETIC
SYMMETRIZATION
pdb|3SBA|A Chain A, Zn-Mediated Hexamer Of T4 Lysozyme R76hR80H BY SYNTHETIC
Symmetrization
pdb|3SBA|B Chain B, Zn-Mediated Hexamer Of T4 Lysozyme R76hR80H BY SYNTHETIC
Symmetrization
pdb|3SBA|C Chain C, Zn-Mediated Hexamer Of T4 Lysozyme R76hR80H BY SYNTHETIC
Symmetrization
pdb|3SBA|D Chain D, Zn-Mediated Hexamer Of T4 Lysozyme R76hR80H BY SYNTHETIC
Symmetrization
pdb|3SBA|E Chain E, Zn-Mediated Hexamer Of T4 Lysozyme R76hR80H BY SYNTHETIC
Symmetrization
pdb|3SBA|F Chain F, Zn-Mediated Hexamer Of T4 Lysozyme R76hR80H BY SYNTHETIC
Symmetrization
Length = 165
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 15 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 42
>pdb|2LC9|A Chain A, Solution Structure Of A Minor And Transiently Formed State
Of A T4 Lysozyme Mutant
Length = 164
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|104L|A Chain A, How Amino-Acid Insertions Are Allowed In An Alpha-Helix Of
T4 Lysozyme
pdb|104L|B Chain B, How Amino-Acid Insertions Are Allowed In An Alpha-Helix Of
T4 Lysozyme
Length = 166
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1L88|A Chain A, Similar Hydrophobic Replacements Of Leu 99 And Phe 153
Within The Core Of T4 Lysozyme Have Different Structural
And Thermodynamic Consequences
Length = 164
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1LYH|A Chain A, Dissection Of Helix Capping In T4 Lysozyme By Structural
And Thermodynamic Analysis Of Six Amino Acid
Substitutions At Thr 59
Length = 164
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|156L|A Chain A, Control Of Enzyme Activity By An Engineered Disulfide Bond
Length = 164
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1KY0|A Chain A, Methionine Core Mutant Of T4 Lysozyme
Length = 162
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|2HUM|A Chain A, Crystal Structure Of T4 Lysozyme D72c Synthetic Dimer
pdb|2HUM|B Chain B, Crystal Structure Of T4 Lysozyme D72c Synthetic Dimer
Length = 164
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1L95|A Chain A, Similar Hydrophobic Replacements Of Leu 99 And Phe 153
Within The Core Of T4 Lysozyme Have Different Structural
And Thermodynamic Consequences
Length = 164
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|3RUN|A Chain A, New Strategy To Analyze Structures Of Glycopeptide
Antibiotic-Target Complexes
Length = 168
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1QUO|A Chain A, L99aE108V MUTANT OF T4 LYSOZYME
Length = 162
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1L86|A Chain A, Similar Hydrophobic Replacements Of Leu 99 And Phe 153
Within The Core Of T4 Lysozyme Have Different Structural
And Thermodynamic Consequences
Length = 164
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|147L|A Chain A, Role Of Backbone Flexibility In The Accommodation Of
Variants That Repack The Core Of T4 Lysozyme
Length = 164
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|246L|A Chain A, The Response Of T4 Lysozyme To Large-To-Small
Substitutions Within The Core And Its Relation To The
Hydrophobic Effect
Length = 164
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|227L|A Chain A, Generating Ligand Binding Sites In T4 Lysozyme Using
Deficiency-Creating Substitutions
pdb|228L|A Chain A, Generating Ligand Binding Sites In T4 Lysozyme Using
Deficiency-Creating Substitutions
Length = 164
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|205L|A Chain A, How Amino-Acid Insertions Are Allowed In An Alpha-Helix Of
T4 Lysozyme
Length = 167
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|143L|A Chain A, Role Of Backbone Flexibility In The Accommodation Of
Variants That Repack The Core Of T4 Lysozyme
Length = 164
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1C60|A Chain A, T4 Lysozyme Mutant C54tC97AF153A IN THE PRESENCE OF 8 ATM
Argon
pdb|1C61|A Chain A, T4 Lysozyme Mutant C54tC97AF153A IN THE PRESENCE OF 8 ATM
Krypton
pdb|1C62|A Chain A, T4 Lysozyme Mutant C54tC97AF153A IN THE PRESENCE OF 8 ATM
Xenon
pdb|1L85|A Chain A, Similar Hydrophobic Replacements Of Leu 99 And Phe 153
Within The Core Of T4 Lysozyme Have Different Structural
And Thermodynamic Consequences
Length = 164
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|2B6T|A Chain A, T4 Lysozyme Mutant L99a At 200 Mpa
pdb|2B6W|A Chain A, T4 Lysozyme Mutant L99a At 200 Mpa
pdb|2B6X|A Chain A, T4 Lysozyme Mutant L99a At 200 Mpa
pdb|2B6Y|A Chain A, T4 Lysozyme Mutant L99a At Ambient Pressure
pdb|2B6Z|A Chain A, T4 Lysozyme Mutant L99a At Ambient Pressure
pdb|2B70|A Chain A, T4 Lysozyme Mutant L99a At Ambient Pressure
pdb|2B72|A Chain A, T4 Lysozyme Mutant L99a At 100 Mpa
pdb|2B73|A Chain A, T4 Lysozyme Mutant L99a At 100 Mpa
pdb|2B74|A Chain A, T4 Lysozyme Mutant L99a At 100 Mpa
pdb|2B75|A Chain A, T4 Lysozyme Mutant L99a At 150 Mpa
pdb|2OTY|X Chain X, 1,2-Dichlorobenzene In Complex With T4 Lysozyme L99a
pdb|2OTZ|X Chain X, N-Methylaniline In Complex With T4 Lysozyme L99a
pdb|2OU0|X Chain X, 1-Methylpyrrole In Complex With T4 Lysozyme L99a
pdb|2RAY|X Chain X, Beta-chlorophenetole In Complex With T4 Lysozyme L99a
pdb|2RAZ|X Chain X, 4-(Methylthio)nitrobenzene In Complex With T4 Lysozyme
L99a
pdb|2RB0|X Chain X, 2,6-Difluorobenzylbromide Complex With T4 Lysozyme L99a
pdb|2RB2|X Chain X, 3-Methylbenzylazide In Complex With T4 Lysozyme L99a
pdb|2RB1|X Chain X, 2-Ethoxyphenol In Complex With T4 Lysozyme L99a
Length = 162
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1L0J|A Chain A, Methionine Core Mutant Of T4 Lysozyme
Length = 162
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|252L|A Chain A, Generating Ligand Binding Sites In T4 Lysozyme Using
Deficiency-Creating Substitutions
Length = 164
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1L75|A Chain A, Multiple Stabilizing Alanine Replacements Within Alpha-
Helix 126-134 Of T4 Lysozyme Have Independent, Additive
Effects On Both Structure And Stability
Length = 164
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|168L|A Chain A, Protein Flexibility And Adaptability Seen In 25 Crystal
Forms Of T4 Lysozyme
pdb|168L|B Chain B, Protein Flexibility And Adaptability Seen In 25 Crystal
Forms Of T4 Lysozyme
pdb|168L|C Chain C, Protein Flexibility And Adaptability Seen In 25 Crystal
Forms Of T4 Lysozyme
pdb|168L|D Chain D, Protein Flexibility And Adaptability Seen In 25 Crystal
Forms Of T4 Lysozyme
pdb|168L|E Chain E, Protein Flexibility And Adaptability Seen In 25 Crystal
Forms Of T4 Lysozyme
Length = 164
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1C66|A Chain A, T4 Lysozyme Mutant C54tC97AL121AL133A IN THE PRESENCE OF 8
Atm Argon
pdb|1C67|A Chain A, T4 Lysozyme Mutant C54tC97AL121AL133A IN THE PRESENCE OF 8
Atm Krypton
pdb|1C68|A Chain A, T4 Lysozyme Mutant C54tC97AL121AL133A IN THE PRESENCE OF 8
Atm Xenon
pdb|251L|A Chain A, The Response Of T4 Lysozyme To Large-To-Small
Substitutions Within The Core And Its Relation To The
Hydrophobic Effect
Length = 164
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|212L|A Chain A, Protein Structure Plasticity Exemplified By Insertion And
Deletion Mutants In T4 Lysozyme
Length = 168
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1L73|A Chain A, Multiple Stabilizing Alanine Replacements Within Alpha-
Helix 126-134 Of T4 Lysozyme Have Independent, Additive
Effects On Both Structure And Stability
Length = 164
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1QUD|A Chain A, L99g Mutant Of T4 Lysozyme
Length = 162
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|3PBL|A Chain A, Structure Of The Human Dopamine D3 Receptor In Complex
With Eticlopride
pdb|3PBL|B Chain B, Structure Of The Human Dopamine D3 Receptor In Complex
With Eticlopride
Length = 481
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 241 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 268
>pdb|2HUL|A Chain A, Crystal Structure Of T4 Lysozyme S44c Synthetic Dimer
Length = 164
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1OYU|A Chain A, Long-Distance Conformational Changes In A Protein
Engineered By Modulated Sequence Duplication
pdb|1OYU|B Chain B, Long-Distance Conformational Changes In A Protein
Engineered By Modulated Sequence Duplication
Length = 175
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|157L|A Chain A, Control Of Enzyme Activity By An Engineered Disulfide Bond
Length = 164
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1QUH|A Chain A, L99gE108V MUTANT OF T4 LYSOZYME
Length = 162
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|2HUK|A Chain A, Crystal Structure Of T4 Lysozyme V131c Synthetic Dimer
pdb|3G3V|A Chain A, Crystal Structure Of Spin Labeled T4 Lysozyme (V131r1) At
291 K
pdb|1ZUR|A Chain A, Crystal Structure Of Spin Labeled T4 Lysozyme (V131r1f)
pdb|1ZWN|A Chain A, Crystal Structure Of Spin Labeled T4 Lysozyme (V131r1b)
pdb|2A4T|A Chain A, Crystal Structure Of Spin Labeled T4 Lysozyme (V131r7)
pdb|2CUU|A Chain A, Crystal Structure Of Spin Labeled T4 Lysozyme (v131r1)
Length = 164
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1G07|A Chain A, Crystal Structure Of T4 Lysozyme Mutant V149c
Length = 164
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|138L|A Chain A, Rapid Crystallization Of T4 Lysozyme By Intermolecular
Disulfide Crosslinking
Length = 164
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|2Q9D|A Chain A, Structure Of Spin-Labeled T4 Lysozyme Mutant A41r1
Length = 164
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1ZYT|A Chain A, Crystal Structure Of Spin Labeled T4 Lysozyme (A82r1)
Length = 164
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1P56|A Chain A, Duplication-Extension Of Helix A Of T4 Lysozyme
Length = 176
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1L74|A Chain A, Multiple Stabilizing Alanine Replacements Within Alpha-
Helix 126-134 Of T4 Lysozyme Have Independent, Additive
Effects On Both Structure And Stability
Length = 164
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|3G3W|A Chain A, Crystal Structure Of Spin Labeled T4 Lysozyme (T151r1) At
291 K
pdb|3G3X|A Chain A, Crystal Structure Of Spin Labeled T4 Lysozyme (T151r1) At
100 K
Length = 164
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|2Q9E|A Chain A, Structure Of Spin-Labeled T4 Lysozyme Mutant S44r1
pdb|2Q9E|B Chain B, Structure Of Spin-Labeled T4 Lysozyme Mutant S44r1
pdb|2Q9E|C Chain C, Structure Of Spin-Labeled T4 Lysozyme Mutant S44r1
Length = 164
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|2IGC|A Chain A, Structure Of Spin Labeled T4 Lysozyme Mutant T115r1a
pdb|2NTG|A Chain A, Structure Of Spin-Labeled T4 Lysozyme Mutant T115r7
pdb|2OU8|A Chain A, Structure Of Spin-Labeled T4 Lysozyme Mutant T115r1 At
Room Temperature
Length = 164
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1L36|A Chain A, Toward A Simplification Of The Protein Folding Problem: A
Stabilizing Polyalanine Alpha-Helix Engineered In T4
Lysozyme
Length = 164
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1G0K|A Chain A, Crystal Structure Of T4 Lysozyme Mutant T152c
Length = 164
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1QSB|A Chain A, The Introduction Of Strain And Its Effects On The
Structure And Stability Of T4 Lysozyme
Length = 162
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1L18|A Chain A, Hydrophobic Stabilization In T4 Lysozyme Determined
Directly By Multiple Substitutions Of Ile 3
Length = 164
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1C6L|A Chain A, T4 Lysozyme Mutant C54tC97AL99AF153A IN THE PRESENCE OF 8
Atm Argon
pdb|1C6M|A Chain A, T4 Lysozyme Mutant C54tC97AL99AF153A IN THE PRESENCE OF 8
Atm Krypton
pdb|1C6N|A Chain A, T4 Lysozyme Mutant C54tC97AL99AF153A IN THE PRESENCE OF 8
Atm Xenon
pdb|1L84|A Chain A, A Cavity-Containing Mutant Of T4 Lysozyme Is Stabilized By
Buried Benzene
pdb|1L89|A Chain A, Similar Hydrophobic Replacements Of Leu 99 And Phe 153
Within The Core Of T4 Lysozyme Have Different Structural
And Thermodynamic Consequences
Length = 164
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|170L|A Chain A, Protein Flexibility And Adaptability Seen In 25 Crystal
Forms Of T4 Lysozyme
Length = 164
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|142L|A Chain A, Role Of Backbone Flexibility In The Accommodation Of
Variants That Repack The Core Of T4 Lysozyme
Length = 164
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|4GBR|B Chain B, N-terminal T4 Lysozyme Fusion Facilitates Crystallization
Of A G Protein Coupled Receptor
Length = 163
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|3C80|A Chain A, T4 Lysozyme Mutant R96y At Room Temperature
Length = 164
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|2NTH|A Chain A, Structure Of Spin-Labeled T4 Lysozyme Mutant L118r1
Length = 164
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1L29|A Chain A, Replacements Of Pro86 In Phage T4 Lysozyme Extend An
Alpha-Helix But Do Not Alter Protein Stability
Length = 164
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1L07|A Chain A, Contributions Of Hydrogen Bonds Of Thr 157 To The
Thermodynamic Stability Of Phage T4 Lysozyme
Length = 164
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1L09|A Chain A, Contributions Of Hydrogen Bonds Of Thr 157 To The
Thermodynamic Stability Of Phage T4 Lysozyme
Length = 164
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|149L|A Chain A, Conservation Of Solvent-Binding Sites In 10 Crystal Forms
Of T4 Lysozyme
Length = 164
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1DYF|A Chain A, Determination Of Alpha-Helix Propensity Within The Context
Of A Folded Protein: Sites 44 And 131 In Bacteriophage
T4 Lysozyme
Length = 164
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|191L|A Chain A, A Helix Initiation Signal In T4 Lysozyme Identified By
Polyalanine Mutagenesis
Length = 164
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1QT4|A Chain A, T26q Mutant Of T4 Lysozyme
Length = 164
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYQIGIGHLLTKSPSL 39
>pdb|2OU9|A Chain A, Structure Of Spin-Labeled T4 Lysozyme Mutant T115r1R119A
Length = 164
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|3FAD|A Chain A, Evaulaution At Atomic Resolution Of The Role Of Strain In
Destabilizing The Temperature Sensitive T4 Lysozyme
Mutant Arg96-->his
Length = 164
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|3C7Z|A Chain A, T4 Lysozyme Mutant D89aR96H AT ROOM TEMPERATURE
Length = 164
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1DYD|A Chain A, Determination Of Alpha-Helix Propensity Within The Context
Of A Folded Protein: Sites 44 And 131 In Bacteriophage
T4 Lysozyme
Length = 164
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1L31|A Chain A, Replacements Of Pro86 In Phage T4 Lysozyme Extend An
Alpha-Helix But Do Not Alter Protein Stability
Length = 164
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1L34|A Chain A, High-Resolution Structure Of The Temperature-Sensitive
Mutant Of Phage Lysozyme, Arg 96 (Right Arrow) His
pdb|3F8V|A Chain A, Evaulaution At Atomic Resolution Of The Role Of Strain In
Destabilizing The Temperature Sensitive T4 Lysozyme
Mutant Arg96-->his
Length = 164
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|3HWL|A Chain A, Crystal Structure Of T4 Lysozyme With The Unnatural Amino
Acid P- Acetyl-L-Phenylalanine Incorporated At Position
131
Length = 164
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|3FI5|A Chain A, Crystal Structure Of T4 Lysozyme Mutant R96w
pdb|3FI5|B Chain B, Crystal Structure Of T4 Lysozyme Mutant R96w
pdb|3FI5|C Chain C, Crystal Structure Of T4 Lysozyme Mutant R96w
pdb|3FI5|D Chain D, Crystal Structure Of T4 Lysozyme Mutant R96w
Length = 164
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|3DKE|X Chain X, Polar And Non-Polar Cavities In Phage T4 Lysozyme
Length = 164
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1L30|A Chain A, Replacements Of Pro86 In Phage T4 Lysozyme Extend An
Alpha-Helix But Do Not Alter Protein Stability
Length = 164
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1L72|A Chain A, Multiple Stabilizing Alanine Replacements Within Alpha-
Helix 126-134 Of T4 Lysozyme Have Independent, Additive
Effects On Both Structure And Stability
Length = 164
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|3F9L|A Chain A, Evaulaution At Atomic Resolution Of The Role Of Strain In
Destabilizing The Temperature Sensitive T4 Lysozyme
Mutant Arg96-->his
Length = 164
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|3C83|A Chain A, Bacteriophage T4 Lysozyme Mutant D89a In Wildtype
Background At Room Temperature
Length = 164
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|3EML|A Chain A, The 2.6 A Crystal Structure Of A Human A2a Adenosine
Receptor Bound To Zm241385.
pdb|3QAK|A Chain A, Agonist Bound Structure Of The Human Adenosine A2a
Receptor
Length = 488
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 234 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 261
>pdb|1L13|A Chain A, Contributions Of Hydrogen Bonds Of Thr 157 To The
Thermodynamic Stability Of Phage T4 Lysozyme
Length = 164
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1L24|A Chain A, Enhanced Protein Thermostability From Site-directed
Mutations That Decrease The Entropy Of Unfolding
Length = 164
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1L16|A Chain A, Structural Analysis Of The Temperature-Sensitive Mutant Of
Bacteriophage T4 Lysozyme, Glycine 156 (Right Arrow)
Aspartic Acid
Length = 164
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1L56|A Chain A, Analysis Of The Interaction Between Charged Side Chains
And The Alpha-helix Dipole Using Designed Thermostable
Mutants Of Phage T4 Lysozyme
Length = 164
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|3DN8|A Chain A, Iodopentafluorobenzene Binding In The Hydrophobic Cavity
Of T4 Lysozyme L99a Mutant (Seleno Version)
pdb|3DNA|A Chain A, Iodobenzene Binding In The Hydrophobic Cavity Of T4
Lysozyme L99a Mutant (Seleno Version)
Length = 164
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|177L|A Chain A, Protein Flexibility And Adaptability Seen In 25 Crystal
Forms Of T4 Lysozyme
pdb|178L|A Chain A, Protein Flexibility And Adaptability Seen In 25 Crystal
Forms Of T4 Lysozyme
Length = 164
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1DYC|A Chain A, Determination Of Alpha-Helix Propensity Within The Context
Of A Folded Protein: Sites 44 And 131 In Bacteriophage
T4 Lysozyme
Length = 164
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1L48|A Chain A, Structural And Thermodynamic Analysis Of The Packing Of
Two Alpha- Helices In Bacteriophage T4 Lysozyme
Length = 164
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|139L|A Chain A, Rapid Crystallization Of T4 Lysozyme By Intermolecular
Disulfide Crosslinking
Length = 164
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1LYD|A Chain A, Crystal Structure Of T4-Lysozyme Generated From Synthetic
Coding Dna Expressed In Escherichia Coli
pdb|2LZM|A Chain A, Structure Of Bacteriophage T4 Lysozyme Refined At 1.7
Angstroms Resolution
pdb|3LZM|A Chain A, Structural Studies Of Mutants Of T4 Lysozyme That Alter
Hydrophobic Stabilization
pdb|4LZM|A Chain A, Comparison Of The Crystal Structure Of Bacteriophage T4
Lysozyme At Low, Medium, And High Ionic Strengths
pdb|5LZM|A Chain A, Comparison Of The Crystal Structure Of Bacteriophage T4
Lysozyme At Low, Medium, And High Ionic Strengths
pdb|6LZM|A Chain A, Comparison Of The Crystal Structure Of Bacteriophage T4
Lysozyme At Low, Medium, And High Ionic Strengths
pdb|7LZM|A Chain A, Comparison Of The Crystal Structure Of Bacteriophage T4
Lysozyme At Low, Medium, And High Ionic Strengths
Length = 164
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1L12|A Chain A, Contributions Of Hydrogen Bonds Of Thr 157 To The
Thermodynamic Stability Of Phage T4 Lysozyme
Length = 164
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1L97|A Chain A, Structure Of A Hinge-Bending Bacteriophage T4 Lysozyme
Mutant, Ile3-> Pro
pdb|1L97|B Chain B, Structure Of A Hinge-Bending Bacteriophage T4 Lysozyme
Mutant, Ile3-> Pro
pdb|1L96|A Chain A, Structure Of A Hinge-bending Bacteriophage T4 Lysozyme
Mutant, Ile3-> Pro
Length = 164
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1L71|A Chain A, Multiple Stabilizing Alanine Replacements Within Alpha-
Helix 126-134 Of T4 Lysozyme Have Independent, Additive
Effects On Both Structure And Stability
Length = 164
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1L23|A Chain A, Enhanced Protein Thermostability From Site-Directed
Mutations That Decrease The Entropy Of Unfolding
Length = 164
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|3C82|A Chain A, Bacteriophage Lysozyme T4 Lysozyme Mutant K85aR96H
Length = 164
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1L60|A Chain A, Analysis Of The Interaction Between Charged Side Chains
And The Alpha-Helix Dipole Using Designed Thermostable
Mutants Of Phage T4 Lysozyme
Length = 164
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1L11|A Chain A, Contributions Of Hydrogen Bonds Of Thr 157 To The
Thermodynamic Stability Of Phage T4 Lysozyme
Length = 164
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|148L|E Chain E, A Covalent Enzyme-Substrate Intermediate With Saccharide
Distortion In A Mutant T4 Lysozyme
pdb|180L|A Chain A, Protein Flexibility And Adaptability Seen In 25 Crystal
Forms Of T4 Lysozyme
pdb|180L|B Chain B, Protein Flexibility And Adaptability Seen In 25 Crystal
Forms Of T4 Lysozyme
pdb|1QTV|A Chain A, T26e Apo Structure Of T4 Lysozyme
Length = 164
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYEIGIGHLLTKSPSL 39
>pdb|3CDV|A Chain A, Contributions Of All 20 Amino Acids At Site 96 To The
Stability And Structure Of T4 Lysozyme
Length = 164
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1L27|A Chain A, Replacements Of Pro86 In Phage T4 Lysozyme Extend An
Alpha-Helix But Do Not Alter Protein Stability
Length = 164
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1L17|A Chain A, Hydrophobic Stabilization In T4 Lysozyme Determined
Directly By Multiple Substitutions Of Ile 3
Length = 164
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1L38|A Chain A, Contributions Of Engineered Surface Salt Bridges To The
Stability Of T4 Lysozyme Determined By Directed
Mutagenesis
Length = 164
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1L98|A Chain A, Perturbation Of Trp 138 In T4 Lysozyme By Mutations At Gln
105 Used To Correlate Changes In Structure, Stability,
Solvation, And Spectroscopic Properties
Length = 164
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|4ARJ|A Chain A, Crystal Structure Of A Pesticin (Translocation And
Receptor Binding Domain) From Y. Pestis And T4-Lysozyme
Chimera
pdb|4ARJ|B Chain B, Crystal Structure Of A Pesticin (Translocation And
Receptor Binding Domain) From Y. Pestis And T4-Lysozyme
Chimera
Length = 339
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 179 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 206
>pdb|3CDT|A Chain A, Contributions Of All 20 Amino Acids At Site 96 To The
Stability And Structure Of T4 Lysozyme
Length = 164
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|3C7W|A Chain A, Contributions Of All 20 Amino Acids At Site 96 To The
Stability And Structure Of T4 Lysozyme
Length = 164
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|4G1J|A Chain A, Sortase C1 Of Gbs Pilus Island 1
pdb|4G1J|B Chain B, Sortase C1 Of Gbs Pilus Island 1
Length = 222
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 233 PLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPT--MYTRL 283
P+YAG+ E + RG+ S PV G +TA G+PT ++T L
Sbjct: 86 PIYAGSAEENLQ----RGVGHLEGTSLPVGGESTHAVLTAHRGLPTAKLFTNL 134
>pdb|1L33|A Chain A, Contributions Of Left-Handed Helical Residues To The
Structure And Stability Of Bacteriophage T4 Lysozyme
Length = 164
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1L10|A Chain A, Structural Studies Of Mutants Of The Lysozyme Of
Bacteriophage T4. The Temperature-Sensitive Mutant
Protein Thr157 (Right Arrow) Ile
Length = 164
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|150L|A Chain A, Conservation Of Solvent-Binding Sites In 10 Crystal Forms
Of T4 Lysozyme
pdb|150L|B Chain B, Conservation Of Solvent-Binding Sites In 10 Crystal Forms
Of T4 Lysozyme
pdb|150L|C Chain C, Conservation Of Solvent-Binding Sites In 10 Crystal Forms
Of T4 Lysozyme
pdb|150L|D Chain D, Conservation Of Solvent-Binding Sites In 10 Crystal Forms
Of T4 Lysozyme
pdb|256L|A Chain A, Bacteriophage T4 Lysozyme
Length = 164
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1L45|A Chain A, Cumulative Site-Directed Charge-Change Replacements In
Bacteriophage T4 Lysozyme Suggest That Long-Range
Electrostatic Interactions Contribute Little To Protein
Stability
Length = 164
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|3CDR|A Chain A, R96q Mutant Of Wildtype Phage T4 Lysozyme At 298 K
Length = 164
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1L46|A Chain A, Cumulative Site-Directed Charge-Change Replacements In
Bacteriophage T4 Lysozyme Suggest That Long-Range
Electrostatic Interactions Contribute Little To Protein
Stability
Length = 164
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1L02|A Chain A, Contributions Of Hydrogen Bonds Of Thr 157 To The
Thermodynamic Stability Of Phage T4 Lysozyme
Length = 164
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1SWY|A Chain A, Use Of A Halide Binding Site To Bypass The 1000-Atom Limit
To Ab Initio Structure Determination
pdb|1SX2|A Chain A, Use Of A Halide Binding Site To Bypass The 1000-Atom Limit
To Structure Determination By Direct Methods
pdb|1SX7|A Chain A, Use Of An Ion-Binding Site To Bypass The 1000-Atom Limit
To Ab Initio Structure Determination By Direct Methods
pdb|1SWZ|A Chain A, Use Of An Ion-Binding Site To Bypass The 1000-Atom Limit
To Ab Initio Structure Determination By Direct Methods
Length = 164
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1L21|A Chain A, Contributions Of Left-Handed Helical Residues To The
Structure And Stability Of Bacteriophage T4 Lysozyme
Length = 164
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1DYE|A Chain A, Determination Of Alpha-Helix Propensity Within The Context
Of A Folded Protein: Sites 44 And 131 In Bacteriophage
T4 Lysozyme
Length = 164
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1L06|A Chain A, Contributions Of Hydrogen Bonds Of Thr 157 To The
Thermodynamic Stability Of Phage T4 Lysozyme
Length = 164
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1DYB|A Chain A, Determination Of Alpha-Helix Propensity Within The Context
Of A Folded Protein: Sites 44 And 131 In Bacteriophage
T4 Lysozyme
Length = 164
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1L70|A Chain A, Multiple Stabilizing Alanine Replacements Within Alpha-
Helix 126-134 Of T4 Lysozyme Have Independent, Additive
Effects On Both Structure And Stability
Length = 164
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1L32|A Chain A, Replacements Of Pro86 In Phage T4 Lysozyme Extend An
Alpha-Helix But Do Not Alter Protein Stability
Length = 164
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1L37|A Chain A, Contributions Of Engineered Surface Salt Bridges To The
Stability Of T4 Lysozyme Determined By Directed
Mutagenesis
Length = 164
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1L51|A Chain A, Structural And Thermodynamic Analysis Of The Packing Of
Two Alpha- Helices In Bacteriophage T4 Lysozyme
Length = 164
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1L28|A Chain A, Replacements Of Pro86 In Phage T4 Lysozyme Extend An
Alpha-Helix But Do Not Alter Protein Stability
Length = 164
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1L25|A Chain A, Replacements Of Pro86 In Phage T4 Lysozyme Extend An
Alpha-Helix But Do Not Alter Protein Stability
Length = 164
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1L15|A Chain A, Contributions Of Hydrogen Bonds Of Thr 157 To The
Thermodynamic Stability Of Phage T4 Lysozyme
Length = 164
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1L14|A Chain A, Contributions Of Hydrogen Bonds Of Thr 157 To The
Thermodynamic Stability Of Phage T4 Lysozyme
Length = 164
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1L00|A Chain A, Perturbation Of Trp 138 In T4 Lysozyme By Mutations At Gln
105 Used To Correlate Changes In Structure, Stability,
Solvation, And Spectroscopic Properties
Length = 164
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1DYG|A Chain A, Determination Of Alpha-Helix Propensity Within The Context
Of A Folded Protein: Sites 44 And 131 In Bacteriophage
T4 Lysozyme
Length = 164
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1L52|A Chain A, Structural And Thermodynamic Analysis Of The Packing Of
Two Alpha- Helices In Bacteriophage T4 Lysozyme
Length = 164
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1L99|A Chain A, Perturbation Of Trp 138 In T4 Lysozyme By Mutations At Gln
105 Used To Correlate Changes In Structure, Stability,
Solvation, And Spectroscopic Properties
Length = 164
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|3K2R|A Chain A, Crystal Structure Of Spin Labeled T4 Lysozyme Mutant
K65v1R76V1
Length = 164
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1L35|A Chain A, Structure Of A Thermostable Disulfide-Bridge Mutant Of
Phage T4 Lysozyme Shows That An Engineered Crosslink In
A Flexible Region Does Not Increase The Rigidity Of The
Folded Protein
Length = 164
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1L22|A Chain A, Contributions Of Left-Handed Helical Residues To The
Structure And Stability Of Bacteriophage T4 Lysozyme
Length = 164
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1L58|A Chain A, Analysis Of The Interaction Between Charged Side Chains
And The Alpha-Helix Dipole Using Designed Thermostable
Mutants Of Phage T4 Lysozyme
Length = 164
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1L49|A Chain A, Structural And Thermodynamic Analysis Of The Packing Of
Two Alpha- Helices In Bacteriophage T4 Lysozyme
Length = 164
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1L04|A Chain A, Contributions Of Hydrogen Bonds Of Thr 157 To The
Thermodynamic Stability Of Phage T4 Lysozyme
pdb|1L05|A Chain A, Contributions Of Hydrogen Bonds Of Thr 157 To The
Thermodynamic Stability Of Phage T4 Lysozyme
Length = 164
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1L20|A Chain A, Enhanced Protein Thermostability From Designed Mutations
That Interact With Alpha-helix Dipoles
Length = 164
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1L08|A Chain A, Contributions Of Hydrogen Bonds Of Thr 157 To The
Thermodynamic Stability Of Phage T4 Lysozyme
Length = 164
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1DYA|A Chain A, Determination Of Alpha-Helix Propensity Within The Context
Of A Folded Protein: Sites 44 And 131 In Bacteriophage
T4 Lysozyme
Length = 164
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|3CDO|A Chain A, Bacteriophage T4 Lysozyme Mutant R96v In Wildtype
Background At Low Temperature
pdb|3CDO|B Chain B, Bacteriophage T4 Lysozyme Mutant R96v In Wildtype
Background At Low Temperature
pdb|3CDO|C Chain C, Bacteriophage T4 Lysozyme Mutant R96v In Wildtype
Background At Low Temperature
pdb|3CDO|D Chain D, Bacteriophage T4 Lysozyme Mutant R96v In Wildtype
Background At Low Temperature
Length = 164
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1L57|A Chain A, Analysis Of The Interaction Between Charged Side Chains
And The Alpha-Helix Dipole Using Designed Thermostable
Mutants Of Phage T4 Lysozyme
Length = 164
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|169L|A Chain A, Protein Flexibility And Adaptability Seen In 25 Crystal
Forms Of T4 Lysozyme
pdb|169L|B Chain B, Protein Flexibility And Adaptability Seen In 25 Crystal
Forms Of T4 Lysozyme
pdb|169L|C Chain C, Protein Flexibility And Adaptability Seen In 25 Crystal
Forms Of T4 Lysozyme
pdb|169L|D Chain D, Protein Flexibility And Adaptability Seen In 25 Crystal
Forms Of T4 Lysozyme
pdb|169L|E Chain E, Protein Flexibility And Adaptability Seen In 25 Crystal
Forms Of T4 Lysozyme
Length = 164
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1L44|A Chain A, Cumulative Site-Directed Charge-Change Replacements In
Bacteriophage T4 Lysozyme Suggest That Long-Range
Electrostatic Interactions Contribute Little To Protein
Stability
Length = 164
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1D9W|A Chain A, Bacteriophage T4 Lysozyme Mutant
Length = 164
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|3FA0|A Chain A, Evaulaution At Atomic Resolution Of The Role Of Strain In
Destabilizing The Temperature Sensitive T4 Lysozyme
Mutant Arg96-->his
Length = 162
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|3C81|A Chain A, Mutant K85a Of T4 Lysozyme In Wildtype Background At Room
Temperature
Length = 164
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|3C8S|A Chain A, Contributions Of All 20 Amino Acids At Site 96 To The
Stability And Structure Of T4 Lysozyme
Length = 164
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1L47|A Chain A, Cumulative Site-Directed Charge-Change Replacements In
Bacteriophage T4 Lysozyme Suggest That Long-Range
Electrostatic Interactions Contribute Little To Protein
Stability
Length = 164
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|3C8R|A Chain A, Contributions Of All 20 Amino Acids At Site 96 To
Stability And Structure Of T4 Lysozyme
Length = 164
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|2O79|A Chain A, T4 Lysozyme With C-Terminal Extension
Length = 170
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1T6H|A Chain A, Crystal Structure T4 Lysozyme Incorporating An Unnatural
Amino Acid P-Iodo-L-Phenylalanine At Position 153
Length = 164
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1L01|A Chain A, Structural Studies Of Mutants Of The Lysozyme Of
Bacteriophage T4. The Temperature-Sensitive Mutant
Protein Thr157 (Right Arrow) Ile
Length = 164
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1C69|A Chain A, T4 Lysozyme Mutant C54tC97AL133A IN THE PRESENCE OF 8 ATM
Argon
pdb|1C6A|A Chain A, T4 Lysozyme Mutant C54tC97AL133A IN THE PRESENCE OF 8 ATM
Krypton
pdb|1C6B|A Chain A, T4 Lysozyme Mutant C54tC97AL133A IN THE PRESENCE OF 8 ATM
Xenon
pdb|1L69|A Chain A, Multiple Stabilizing Alanine Replacements Within Alpha-
Helix 126-134 Of T4 Lysozyme Have Independent, Additive
Effects On Both Structure And Stability
Length = 164
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|3L2X|A Chain A, Crystal Structure Of Spin Labeled T4 Lysozyme Mutant
115-119rx
Length = 164
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|3CDQ|A Chain A, Contributions Of All 20 Amino Acids At Site 96 To The
Stability And Structure Of T4 Lysozyme
Length = 164
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|3C7Y|A Chain A, Mutant R96a Of T4 Lysozyme In Wildtype Background At 298k
Length = 164
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|3C8Q|A Chain A, Contribution Of All 20 Amino Acids At Site 96 To The
Stability And Structure Of T4 Lysozyme
Length = 164
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1LPY|A Chain A, Multiple Methionine Substitutions In T4 Lysozyme
Length = 164
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|190L|A Chain A, A Helix Initiation Signal In T4 Lysozyme Identified By
Polyalanine Mutagenesis
Length = 164
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|223L|A Chain A, Generating Ligand Binding Sites In T4 Lysozyme Using
Deficiency-Creating Substitutions
pdb|225L|A Chain A, Generating Ligand Binding Sites In T4 Lysozyme Using
Deficiency-Creating Substitutions
pdb|226L|A Chain A, Generating Ligand Binding Sites In T4 Lysozyme Using
Deficiency-Creating Substitutions
Length = 164
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1L53|A Chain A, Structural And Thermodynamic Analysis Of The Packing Of
Two Alpha- Helices In Bacteriophage T4 Lysozyme
Length = 164
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|3SB5|B Chain B, Zn-Mediated Trimer Of T4 Lysozyme R125cE128C BY SYNTHETIC
Symmetrization
pdb|3SB5|A Chain A, Zn-Mediated Trimer Of T4 Lysozyme R125cE128C BY SYNTHETIC
Symmetrization
pdb|3SB5|C Chain C, Zn-Mediated Trimer Of T4 Lysozyme R125cE128C BY SYNTHETIC
Symmetrization
pdb|3SB5|D Chain D, Zn-Mediated Trimer Of T4 Lysozyme R125cE128C BY SYNTHETIC
Symmetrization
Length = 165
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 15 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 42
>pdb|1LGU|A Chain A, T4 Lysozyme Mutant L99aM102Q
pdb|1LGW|A Chain A, T4 Lysozyme Mutant L99aM102Q BOUND BY 2-Fluoroaniline
pdb|1LGX|A Chain A, T4 Lysozyme Mutant L99aM102Q BOUND BY 3,5-Difluoroaniline
pdb|1LI2|A Chain A, T4 Lysozyme Mutant L99aM102Q BOUND BY PHENOL
pdb|1LI3|A Chain A, T4 Lysozyme Mutant L99aM102Q BOUND BY 3-Chlorophenol
pdb|1LI6|A Chain A, T4 Lysozyme Mutant L99aM102Q BOUND BY 5-Methylpyrrole
pdb|1OV5|A Chain A, T4 Lysozyme Cavity Mutant L99aM102Q BOUND WITH 2-
Allylphenol
pdb|1OV7|A Chain A, T4 Lysozyme Cavity Mutant L99aM102Q BOUND WITH 2-Allyl-6-
Methyl-Phenol
pdb|1OVH|A Chain A, T4 Lysozyme Cavity Mutant L99aM102Q BOUND WITH 2-Chloro-6-
Methyl-Aniline
pdb|1OVJ|A Chain A, T4 Lysozyme Cavity Mutant L99a/m102q Bound With
3-fluoro-2- Methyl_aniline
pdb|1OVK|A Chain A, T4 Lysozyme Cavity Mutant L99aM102Q BOUND WITH N-Allyl-
Aniline
pdb|1OWY|A Chain A, T4 Lysozyme Cavity Mutant L99a/m102q Bound With 2-propyl-
Aniline
pdb|1OWZ|A Chain A, T4 Lysozyme Cavity Mutant L99aM102Q BOUND WITH 4-
Fluorophenethyl Alcohol
pdb|1XEP|A Chain A, Catechol In Complex With T4 Lysozyme L99aM102Q
Length = 164
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1L03|A Chain A, Contributions Of Hydrogen Bonds Of Thr 157 To The
Thermodynamic Stability Of Phage T4 Lysozyme
Length = 164
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|172L|A Chain A, Protein Flexibility And Adaptability Seen In 25 Crystal
Forms Of T4 Lysozyme
Length = 164
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|3RBI|A Chain A, The Type Iii Crystal Structure Of Streptococcus Agalactiae
Sortase C1
pdb|3RBI|B Chain B, The Type Iii Crystal Structure Of Streptococcus Agalactiae
Sortase C1
pdb|3RBK|A Chain A, The Type Ii Crystal Structure Of Streptococcus Agalactiae
Sortase C1
pdb|3RBK|B Chain B, The Type Ii Crystal Structure Of Streptococcus Agalactiae
Sortase C1
pdb|3TB7|A Chain A, The Type I Crystal Structure Of Streptococcus Agalactiae
Sortase C1
pdb|3TBE|A Chain A, The Crystal Structure Of The Complex Of Streptococcus
Agalactiae Sortase C1 And Mtset
pdb|3TBE|B Chain B, The Crystal Structure Of The Complex Of Streptococcus
Agalactiae Sortase C1 And Mtset
pdb|3TBE|C Chain C, The Crystal Structure Of The Complex Of Streptococcus
Agalactiae Sortase C1 And Mtset
pdb|3TBE|D Chain D, The Crystal Structure Of The Complex Of Streptococcus
Agalactiae Sortase C1 And Mtset
pdb|3TBE|E Chain E, The Crystal Structure Of The Complex Of Streptococcus
Agalactiae Sortase C1 And Mtset
pdb|3TBE|F Chain F, The Crystal Structure Of The Complex Of Streptococcus
Agalactiae Sortase C1 And Mtset
Length = 230
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 233 PLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPT--MYTRL 283
P+YAG+ E + RG+ S PV G +TA G+PT ++T L
Sbjct: 97 PIYAGSAEENLQ----RGVGHLEGTSLPVGGESTHAVLTAHRGLPTAKLFTNL 145
>pdb|1L50|A Chain A, Structural And Thermodynamic Analysis Of The Packing Of
Two Alpha- Helices In Bacteriophage T4 Lysozyme
Length = 164
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1L26|A Chain A, Replacements Of Pro86 In Phage T4 Lysozyme Extend An
Alpha-helix But Do Not Alter Protein Stability
Length = 164
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|2RBN|A Chain A, N-Phenylglycinonitrile In Complex With T4 Lysozyme
L99aM102Q
pdb|2RBO|A Chain A, 2-Nitrothiophene In Complex With T4 Lysozyme L99aM102Q
pdb|2RBP|A Chain A, 2-(N-Propylthio)ethanol In Complex With T4 Lysozyme
L99aM102Q
pdb|2RBQ|A Chain A, 3-Methylbenzylazide In Complex With T4 L99aM102Q
pdb|2RBR|A Chain A, 2-Phenoxyethanol In Complex With T4 Lysozyme L99aM102Q
pdb|2RBS|A Chain A, (r)(+)-3-chloro-1-phenyl-1-propanol In Complex With T4
Lysozyme L99a/m102q
Length = 162
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1D3N|A Chain A, Methionine Core Mutation
Length = 164
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|3SBB|C Chain C, Disulphide-Mediated Tetramer Of T4 Lysozyme R76cR80C BY
SYNTHETIC Symmetrization
Length = 165
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 15 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 42
>pdb|1LWK|A Chain A, Multiple Methionine Substitutions Are Tolerated In T4
Lysozyme And Have Coupled Effects On Folding And
Stability
Length = 164
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|3RBJ|A Chain A, Crystal Structure Of The Lid-Mutant Of Streptococcus
Agalactiae Sortase C1
pdb|3RBJ|B Chain B, Crystal Structure Of The Lid-Mutant Of Streptococcus
Agalactiae Sortase C1
Length = 230
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 233 PLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPT--MYTRL 283
P+YAG+ E + RG+ S PV G +TA G+PT ++T L
Sbjct: 97 PIYAGSAEENLQ----RGVGHLEGTSLPVGGESTHAVLTAHRGLPTAKLFTNL 145
>pdb|2QAR|C Chain C, Structure Of The 2tel Crystallization Module Fused To T4
Lysozyme With A Helical Linker.
pdb|2QAR|F Chain F, Structure Of The 2tel Crystallization Module Fused To T4
Lysozyme With A Helical Linker
Length = 163
Score = 28.1 bits (61), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 13 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 40
>pdb|167L|A Chain A, Protein Flexibility And Adaptability Seen In 25 Crystal
Forms Of T4 Lysozyme
pdb|167L|B Chain B, Protein Flexibility And Adaptability Seen In 25 Crystal
Forms Of T4 Lysozyme
Length = 164
Score = 28.1 bits (61), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
>pdb|1CX6|A Chain A, T4 Lysozyme Substituted With Selenomethionine
Length = 164
Score = 28.1 bits (61), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 GVQVKIAEDESGSDAAGVGEICVKSPSL 390
G+++KI +D G G+G + KSPSL
Sbjct: 12 GLRLKIYKDTEGYYTIGIGHLLTKSPSL 39
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,637,114
Number of Sequences: 62578
Number of extensions: 509332
Number of successful extensions: 1509
Number of sequences better than 100.0: 433
Number of HSP's better than 100.0 without gapping: 425
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 976
Number of HSP's gapped (non-prelim): 453
length of query: 435
length of database: 14,973,337
effective HSP length: 102
effective length of query: 333
effective length of database: 8,590,381
effective search space: 2860596873
effective search space used: 2860596873
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)