Query 013869
Match_columns 435
No_of_seqs 124 out of 2058
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 18:37:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013869.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013869hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ni2_A 4-coumarate:COA ligase; 100.0 4.8E-66 1.6E-70 515.1 33.4 400 1-435 22-437 (536)
2 4fuq_A Malonyl COA synthetase; 100.0 3E-66 1E-70 512.4 29.7 395 4-435 3-402 (503)
3 1mdb_A 2,3-dihydroxybenzoate-A 100.0 1.4E-65 4.7E-70 511.9 32.2 397 1-435 25-433 (539)
4 3r44_A Fatty acyl COA syntheta 100.0 1.5E-65 5.2E-70 509.0 31.3 396 1-435 16-416 (517)
5 3g7s_A Long-chain-fatty-acid-- 100.0 3.9E-65 1.3E-69 510.0 32.3 400 1-435 19-442 (549)
6 3rix_A Luciferase, luciferin 4 100.0 4.3E-65 1.5E-69 509.8 32.4 399 1-435 20-442 (550)
7 3o83_A Peptide arylation enzym 100.0 3.2E-65 1.1E-69 509.9 30.8 400 1-435 30-442 (544)
8 1v25_A Long-chain-fatty-acid-C 100.0 2.3E-64 7.9E-69 503.3 33.2 397 1-435 18-438 (541)
9 2d1s_A Luciferase, luciferin 4 100.0 4.3E-64 1.5E-68 501.8 34.0 397 2-435 26-444 (548)
10 3etc_A AMP-binding protein; ad 100.0 7.2E-64 2.5E-68 502.7 32.9 394 4-435 59-478 (580)
11 1t5h_X 4-chlorobenzoyl COA lig 100.0 1.4E-63 4.9E-68 493.8 31.5 393 1-435 2-405 (504)
12 3ivr_A Putative long-chain-fat 100.0 5.2E-63 1.8E-67 490.5 33.7 392 1-435 6-403 (509)
13 3fce_A D-alanine--poly(phospho 100.0 4.4E-64 1.5E-68 498.6 25.2 389 1-435 1-402 (512)
14 4gr5_A Non-ribosomal peptide s 100.0 1.4E-63 4.7E-68 500.8 27.2 381 2-435 76-472 (570)
15 2v7b_A Benzoate-coenzyme A lig 100.0 8.3E-63 2.8E-67 491.4 31.5 396 3-435 26-432 (529)
16 4dg8_A PA1221; ANL superfamily 100.0 5.5E-63 1.9E-67 499.0 29.5 379 2-435 28-422 (620)
17 3rg2_A Enterobactin synthase c 100.0 1E-62 3.5E-67 498.7 31.3 400 1-435 27-437 (617)
18 3t5a_A Long-chain-fatty-acid-- 100.0 3.3E-63 1.1E-67 489.0 27.0 387 1-430 24-480 (480)
19 3nyq_A Malonyl-COA ligase; A/B 100.0 4.7E-63 1.6E-67 489.5 27.4 382 1-435 22-409 (505)
20 3c5e_A Acyl-coenzyme A synthet 100.0 3E-62 1E-66 490.3 33.4 394 3-435 40-459 (570)
21 1amu_A GRSA, gramicidin synthe 100.0 1.1E-62 3.9E-67 492.6 30.2 382 1-435 39-433 (563)
22 1pg4_A Acetyl-COA synthetase; 100.0 3.7E-62 1.3E-66 496.8 32.8 400 3-435 78-520 (652)
23 3e7w_A D-alanine--poly(phospho 100.0 2.2E-62 7.4E-67 486.1 28.8 386 1-435 1-401 (511)
24 3tsy_A Fusion protein 4-coumar 100.0 5E-62 1.7E-66 518.1 33.5 400 1-435 61-484 (979)
25 3l8c_A D-alanine--poly(phospho 100.0 1.3E-62 4.6E-67 489.1 26.6 388 1-435 4-406 (521)
26 1ry2_A Acetyl-coenzyme A synth 100.0 1.5E-61 5.2E-66 492.5 31.9 401 2-435 83-529 (663)
27 3ipl_A 2-succinylbenzoate--COA 100.0 7.9E-62 2.7E-66 481.3 28.1 386 1-435 1-401 (501)
28 3kxw_A Saframycin MX1 syntheta 100.0 2.3E-61 8E-66 487.7 27.1 396 1-435 11-461 (590)
29 3gqw_A Fatty acid AMP ligase; 100.0 6.9E-60 2.4E-64 475.8 31.3 393 2-435 22-464 (576)
30 3ite_A SIDN siderophore synthe 100.0 6.8E-60 2.3E-64 473.8 25.8 388 1-435 20-430 (562)
31 2vsq_A Surfactin synthetase su 100.0 1.1E-58 3.7E-63 504.2 26.8 385 2-435 465-864 (1304)
32 4gs5_A Acyl-COA synthetase (AM 100.0 3.1E-38 1.1E-42 297.6 16.7 218 169-435 36-253 (358)
33 3qov_A Phenylacetate-coenzyme 100.0 1.3E-35 4.3E-40 288.3 17.0 237 167-435 82-334 (436)
34 2y4o_A Phenylacetate-coenzyme 100.0 2.6E-35 8.8E-40 286.7 16.5 237 166-435 88-338 (443)
35 2y27_A Phenylacetate-coenzyme 100.0 6.6E-34 2.3E-38 276.3 18.3 237 166-435 86-336 (437)
36 3hgu_A EHPF; phenazine, antibi 100.0 2.3E-29 7.8E-34 238.8 15.5 198 166-388 87-321 (369)
37 4eql_A 4-substituted benzoates 97.8 7.6E-05 2.6E-09 73.0 9.7 114 300-435 294-428 (581)
38 4b2g_A GH3-1 auxin conjugating 97.7 0.00042 1.4E-08 68.0 13.0 33 165-197 94-127 (609)
39 4epl_A Jasmonic acid-amido syn 97.7 0.00029 9.9E-09 68.8 11.4 116 299-435 298-435 (581)
40 2y27_A Phenylacetate-coenzyme 91.6 1.5 5.3E-05 41.3 11.7 91 25-133 108-200 (437)
41 2y4o_A Phenylacetate-coenzyme 91.2 1.8 6.1E-05 40.9 11.8 89 26-132 111-201 (443)
42 3qov_A Phenylacetate-coenzyme 90.3 2.1 7.2E-05 40.3 11.3 91 25-133 104-196 (436)
43 3ipl_A 2-succinylbenzoate--COA 87.7 5.9 0.0002 38.0 12.6 98 14-132 161-268 (501)
44 2d1s_A Luciferase, luciferin 4 81.9 8.7 0.0003 37.3 10.8 97 16-131 192-299 (548)
45 3rix_A Luciferase, luciferin 4 81.6 8 0.00027 37.6 10.4 86 188-285 49-138 (550)
46 1mdb_A 2,3-dihydroxybenzoate-A 80.7 16 0.00053 35.4 12.1 99 14-133 180-290 (539)
47 3g7s_A Long-chain-fatty-acid-- 79.9 16 0.00055 35.4 11.9 106 168-285 32-140 (549)
48 3o83_A Peptide arylation enzym 78.9 15 0.00051 35.6 11.4 98 14-132 189-298 (544)
49 3ivr_A Putative long-chain-fat 78.3 12 0.00041 35.9 10.4 98 168-285 19-119 (509)
50 3ni2_A 4-coumarate:COA ligase; 77.5 12 0.00041 36.2 10.2 100 167-284 34-136 (536)
51 3r44_A Fatty acyl COA syntheta 76.7 21 0.00071 34.3 11.6 96 14-131 168-274 (517)
52 3hgu_A EHPF; phenazine, antibi 76.3 9.8 0.00034 34.7 8.8 86 25-129 109-219 (369)
53 1v25_A Long-chain-fatty-acid-C 75.2 24 0.00083 34.0 11.7 100 168-283 31-133 (541)
54 4gs5_A Acyl-COA synthetase (AM 75.1 6.7 0.00023 35.8 7.2 95 14-131 35-139 (358)
55 3t5a_A Long-chain-fatty-acid-- 74.8 22 0.00075 33.6 11.1 106 168-286 37-149 (480)
56 3fce_A D-alanine--poly(phospho 74.4 7.9 0.00027 37.2 7.9 96 14-129 142-249 (512)
57 1t5h_X 4-chlorobenzoyl COA lig 73.2 13 0.00044 35.6 9.1 98 14-132 151-261 (504)
58 3e7w_A D-alanine--poly(phospho 72.9 10 0.00034 36.5 8.2 97 14-130 141-249 (511)
59 3rg2_A Enterobactin synthase c 71.6 40 0.0014 33.2 12.4 98 14-132 182-291 (617)
60 3kxw_A Saframycin MX1 syntheta 69.9 37 0.0013 33.1 11.7 100 168-284 24-130 (590)
61 1amu_A GRSA, gramicidin synthe 69.3 29 0.001 33.7 10.7 95 168-282 52-149 (563)
62 3c5e_A Acyl-coenzyme A synthet 69.0 37 0.0013 33.0 11.4 101 168-283 56-160 (570)
63 4fuq_A Malonyl COA synthetase; 68.7 16 0.00055 34.9 8.6 82 188-280 27-111 (503)
64 3etc_A AMP-binding protein; ad 68.4 21 0.00073 34.9 9.5 94 168-277 69-166 (580)
65 2v7b_A Benzoate-coenzyme A lig 65.5 25 0.00085 33.8 9.3 95 168-283 36-134 (529)
66 3tbh_A O-acetyl serine sulfhyd 65.0 48 0.0016 29.7 10.5 60 65-124 68-127 (334)
67 3vc3_A Beta-cyanoalnine syntha 63.8 34 0.0012 30.9 9.2 61 64-124 82-142 (344)
68 3tsy_A Fusion protein 4-coumar 63.4 30 0.001 36.4 10.0 102 14-132 223-335 (979)
69 3nyq_A Malonyl-COA ligase; A/B 61.8 43 0.0015 31.9 10.1 96 14-131 153-259 (505)
70 4gr5_A Non-ribosomal peptide s 60.5 42 0.0014 32.6 9.9 76 168-254 88-167 (570)
71 1pg4_A Acetyl-COA synthetase; 57.3 62 0.0021 32.1 10.6 85 168-257 89-177 (652)
72 3l8c_A D-alanine--poly(phospho 56.9 49 0.0017 31.6 9.6 100 14-131 143-254 (521)
73 1ry2_A Acetyl-coenzyme A synth 52.8 71 0.0024 31.7 10.2 86 167-257 94-184 (663)
74 3gqw_A Fatty acid AMP ligase; 48.8 72 0.0025 30.8 9.4 86 187-284 47-143 (576)
75 3ite_A SIDN siderophore synthe 45.8 1.2E+02 0.004 29.2 10.4 84 168-255 33-122 (562)
76 4dg8_A PA1221; ANL superfamily 43.8 67 0.0023 31.6 8.3 77 168-255 40-119 (620)
77 4h1h_A LMO1638 protein; MCCF-l 43.3 1E+02 0.0035 27.4 8.7 61 63-123 7-86 (327)
78 3sr3_A Microcin immunity prote 43.2 1.1E+02 0.0037 27.4 8.9 61 63-123 8-87 (336)
79 3ss7_X D-serine dehydratase; t 42.0 73 0.0025 29.9 7.9 62 70-131 161-222 (442)
80 4aec_A Cysteine synthase, mito 41.6 89 0.0031 29.1 8.2 59 65-123 171-229 (430)
81 4h27_A L-serine dehydratase/L- 40.6 62 0.0021 29.4 7.0 58 70-127 94-151 (364)
82 3tla_A MCCF; serine protease, 38.7 1.2E+02 0.0041 27.6 8.5 61 63-123 38-117 (371)
83 4eez_A Alcohol dehydrogenase 1 38.6 1.1E+02 0.0037 27.2 8.3 58 63-123 159-216 (348)
84 3l6b_A Serine racemase; pyrido 37.2 95 0.0033 27.9 7.6 57 72-128 79-135 (346)
85 2rkb_A Serine dehydratase-like 35.2 1E+02 0.0036 27.1 7.5 57 72-128 57-113 (318)
86 1zsy_A Mitochondrial 2-enoyl t 34.6 1.3E+02 0.0044 27.0 8.1 60 63-123 163-224 (357)
87 4e5s_A MCCFLIKE protein (BA_56 34.6 1.3E+02 0.0043 27.0 7.8 61 63-123 7-86 (331)
88 1p5j_A L-serine dehydratase; l 33.5 1.1E+02 0.0037 27.8 7.4 58 71-128 95-152 (372)
89 4d9i_A Diaminopropionate ammon 32.9 1.4E+02 0.0048 27.4 8.2 59 72-130 115-173 (398)
90 2pqm_A Cysteine synthase; OASS 32.8 2.4E+02 0.0083 25.1 9.6 59 65-124 75-133 (343)
91 2ayi_A Aminopeptidase T; metal 32.8 87 0.003 29.0 6.6 53 32-99 4-58 (408)
92 2q3b_A Cysteine synthase A; py 32.5 2.5E+02 0.0086 24.5 10.5 59 65-124 64-122 (313)
93 3tqh_A Quinone oxidoreductase; 30.9 1.4E+02 0.0049 26.1 7.7 56 63-123 148-204 (321)
94 1z7w_A Cysteine synthase; tran 30.1 2.8E+02 0.0097 24.3 10.7 60 65-124 63-122 (322)
95 2jwk_A Protein TOLR; periplasm 30.0 68 0.0023 20.9 4.1 36 3-38 32-67 (74)
96 3aey_A Threonine synthase; PLP 29.3 1.2E+02 0.0042 27.2 7.0 59 70-128 78-137 (351)
97 2d1f_A Threonine synthase; ami 29.1 1.5E+02 0.0052 26.7 7.6 59 70-128 86-145 (360)
98 1zjc_A Aminopeptidase AMPS; me 28.8 97 0.0033 28.8 6.2 53 32-99 7-61 (418)
99 2egu_A Cysteine synthase; O-ac 28.0 3E+02 0.01 23.9 9.8 58 66-124 63-120 (308)
100 2vsq_A Surfactin synthetase su 27.7 1.4E+02 0.0049 32.4 8.3 65 189-255 489-556 (1304)
101 2zsj_A Threonine synthase; PLP 27.1 1.3E+02 0.0044 27.0 6.7 59 70-128 80-139 (352)
102 3gaz_A Alcohol dehydrogenase s 26.4 3.3E+02 0.011 24.0 9.4 53 63-120 146-199 (343)
103 1zl0_A Hypothetical protein PA 26.1 2.8E+02 0.0094 24.4 8.4 61 63-123 12-88 (311)
104 2v03_A Cysteine synthase B; py 25.9 2.4E+02 0.0081 24.5 8.1 58 65-123 58-115 (303)
105 1y80_A Predicted cobalamin bin 25.9 2.5E+02 0.0084 22.8 7.8 56 68-123 88-147 (210)
106 3dwg_A Cysteine synthase B; su 24.9 3.5E+02 0.012 23.7 9.6 58 65-123 70-127 (325)
107 1ve1_A O-acetylserine sulfhydr 24.5 3.4E+02 0.012 23.4 10.3 60 65-124 57-117 (304)
108 1y7l_A O-acetylserine sulfhydr 23.9 3.6E+02 0.012 23.5 10.0 58 66-124 60-117 (316)
109 3ip1_A Alcohol dehydrogenase, 23.8 2.9E+02 0.0098 25.2 8.6 55 64-122 210-265 (404)
110 3pc3_A CG1753, isoform A; CBS, 23.4 1.5E+02 0.0051 28.4 6.7 58 65-123 110-167 (527)
111 3uog_A Alcohol dehydrogenase; 23.3 3E+02 0.01 24.6 8.5 55 63-121 185-239 (363)
112 3goh_A Alcohol dehydrogenase, 23.2 1.6E+02 0.0055 25.7 6.5 53 63-120 138-190 (315)
113 3uko_A Alcohol dehydrogenase c 23.1 3.1E+02 0.011 24.6 8.6 57 63-123 189-246 (378)
114 1h2b_A Alcohol dehydrogenase; 23.0 1.6E+02 0.0054 26.4 6.5 57 64-123 183-239 (359)
115 4b7c_A Probable oxidoreductase 22.8 2.3E+02 0.0079 24.9 7.6 57 63-122 145-202 (336)
116 4hlb_A Uncharacterized protein 22.5 1.8E+02 0.0062 19.5 5.4 40 20-75 57-96 (115)
117 2duw_A Putative COA-binding pr 22.2 2.3E+02 0.0077 21.5 6.4 50 69-119 72-121 (145)
118 1o58_A O-acetylserine sulfhydr 22.1 3.9E+02 0.013 23.1 10.0 51 74-124 70-120 (303)
119 4dup_A Quinone oxidoreductase; 22.0 2.7E+02 0.0093 24.7 7.9 78 25-122 138-219 (353)
120 1eg5_A Aminotransferase; PLP-d 21.7 1.6E+02 0.0055 26.1 6.4 56 66-122 87-146 (384)
121 2pfu_A Biopolymer transport EX 21.6 1.4E+02 0.005 20.6 4.8 37 3-39 44-80 (99)
122 3s2e_A Zinc-containing alcohol 21.6 2.3E+02 0.0078 25.0 7.3 57 63-123 162-218 (340)
123 3dzz_A Putative pyridoxal 5'-p 21.3 1.9E+02 0.0066 25.7 6.8 55 65-122 106-167 (391)
124 3jv7_A ADH-A; dehydrogenase, n 21.3 1.9E+02 0.0064 25.7 6.6 57 64-123 168-224 (345)
125 1p0f_A NADP-dependent alcohol 21.2 3.3E+02 0.011 24.3 8.4 57 63-123 187-244 (373)
126 3acd_A Hypoxanthine-guanine ph 20.9 1.6E+02 0.0054 23.6 5.4 21 25-45 12-32 (181)
127 1j0a_A 1-aminocyclopropane-1-c 20.9 1.4E+02 0.005 26.3 5.7 57 69-125 71-129 (325)
128 2ywu_A Hypoxanthine-guanine ph 20.6 1.6E+02 0.0055 23.5 5.4 21 25-45 12-32 (181)
129 2d59_A Hypothetical protein PH 20.6 2.4E+02 0.0083 21.3 6.2 50 69-119 79-128 (144)
130 2yxb_A Coenzyme B12-dependent 20.5 3E+02 0.01 21.3 7.9 45 79-123 33-77 (161)
No 1
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=100.00 E-value=4.8e-66 Score=515.11 Aligned_cols=400 Identities=23% Similarity=0.317 Sum_probs=340.0
Q ss_pred ChHHHHHHHhcccCCCeeEEEeC--CcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCC
Q 013869 1 MEVFKAAYKKGSMARDSVAIRAD--QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPS 78 (435)
Q Consensus 1 ~~i~~~~~~~~~~~p~~~al~~~--~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~ 78 (435)
+|+++.|.++++++|+++|+++. ++++||+||.++++++|++|++. |+++||+|+++++|+
T Consensus 22 ~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~-----------------Gv~~gd~V~i~~~~~ 84 (536)
T 3ni2_A 22 LPLHSYVLENLSNHSSKPCLINGANGDVYTYADVELTARRVASGLNKI-----------------GIQQGDVIMLFLPSS 84 (536)
T ss_dssp CCHHHHHTTTGGGSTTSEEEEETTTCCEEEHHHHHHHHHHHHHHHHHT-----------------TCCTTCEEEEECCSS
T ss_pred CcHHHHHHHHhhcCCCceEEEECCCCCEEEHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEEcCCc
Confidence 57899999999999999999985 68999999999999999999994 999999999999999
Q ss_pred HHHHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHHhccCCccccCCCCCCCC-Ccccc-c
Q 013869 79 FEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVS-SETTV-F 156 (435)
Q Consensus 79 ~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~ 156 (435)
+++++++|||+++|++++|+++.++.+++.++++.++++++|++....+.+..........+..+....... ..... .
T Consensus 85 ~~~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (536)
T 3ni2_A 85 PEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARESDVKVMCVDSAPDGCLHFSELTQ 164 (536)
T ss_dssp HHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHHHTCEEEESSCCCTTCEETHHHHT
T ss_pred HHHHHHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhhcCceEEEecCCCCCccCHHHHhh
Confidence 999999999999999999999999999999999999999999999888777766544333333332211100 00000 0
Q ss_pred cchhhhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHH----hccCCCCCeeEEeecchhhhHHHHHHHH
Q 013869 157 DQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTE----AWEYTSADQFLHCLPLHHVHGLFNALLA 232 (435)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~----~~~~~~~~~~l~~~pl~~~~g~~~~~~~ 232 (435)
......+.....++++++++|||||||.||+|.++|+++.+.+..... .+.+.+.+++++.+|++|..++...++.
T Consensus 165 ~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~ 244 (536)
T 3ni2_A 165 ADENEAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLC 244 (536)
T ss_dssp SCGGGCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSCTTSHHHHHHTHHH
T ss_pred ccccccccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecChHHHHHHHHHHHH
Confidence 011112233567899999999999999999999999999888776554 3457889999999999999998777899
Q ss_pred HHHcCCEEEEcCCcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccccEEEEecC
Q 013869 233 PLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGS 312 (435)
Q Consensus 233 ~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~i~~~G 312 (435)
++..|+++++.+.+++..+++. ++++++|++.++|+++..+++... ....+++++|.+++||
T Consensus 245 ~l~~G~~~v~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~--------~~~~~l~~lr~i~~gG 306 (536)
T 3ni2_A 245 GLRVGAPILIMPKFEIGSLLGL----------IEKYKVSIAPVVPPVMMSIAKSPD--------LDKHDLSSLRMIKSGG 306 (536)
T ss_dssp HHHHTCCEEECSSCCHHHHHHH----------HHHHTCCEEEECHHHHHHHHTCSC--------GGGSCCTTCCEEEEES
T ss_pred HHhcCCEEEEcCCCCHHHHHHH----------HHHhCCeEEEccHHHHHHHHhCcc--------cccCCCccceEEEECC
Confidence 9999999999999999998888 566899999999999999987643 2344689999999999
Q ss_pred CCCCHHHHHHHHHHh-CCcccccccCccccchhccC-----CCCCCCCCccceecCCCeEEEec-CCCCCCCCc-cceEE
Q 013869 313 SALPLPVMQQWETIT-GHRLLERYGMTEFVMAISNP-----LRGARKAGTVGNPLPGVQVKIAE-DESGSDAAG-VGEIC 384 (435)
Q Consensus 313 ~~l~~~l~~~~~~~~-~~~l~~~YG~tE~~~~~~~~-----~~~~~~~~~~G~p~~~~~~~i~d-~~~~~~~~~-~Gel~ 384 (435)
+++++++.+.|++.| ++++++.||+||++.+++.. .......+++|+|+++++++|+| ++++.++.+ .|||+
T Consensus 307 e~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~GEl~ 386 (536)
T 3ni2_A 307 APLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQPGEIC 386 (536)
T ss_dssp SCCCHHHHHHHHHHCTTSEEEEEEECGGGSSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTTCCBCCTTCCEEEE
T ss_pred CCCCHHHHHHHHHHCCCCCccccccccccchhhhcccccCCccccCCCCCeeEeCCCcEEEEEeCCCCcCCCCCCccEEE
Confidence 999999999999999 88999999999998654421 22234678899999999999999 557777766 79999
Q ss_pred EecCCccccccCCchhcccccccCCccccCceEEEcCCccEEEecccccCC
Q 013869 385 VKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRKGIYF 435 (435)
Q Consensus 385 v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~gR~~d~i 435 (435)
++|++++.||+++|+.+.+.|+.+|||+|||+|++|+||++++.||+||+|
T Consensus 387 v~g~~v~~GY~~~p~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~i 437 (536)
T 3ni2_A 387 IRGDQIMKGYLNDPEATSRTIDKEGWLHTGDIGYIDDDDELFIVDRLKELI 437 (536)
T ss_dssp EESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEECSCCE
T ss_pred EeCcccchhhcCChhHHHhhccCCCceEcccEEEEcCCceEEEEecccceE
Confidence 999999999999999999999889999999999999999999999999986
No 2
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=100.00 E-value=3e-66 Score=512.41 Aligned_cols=395 Identities=34% Similarity=0.551 Sum_probs=334.9
Q ss_pred HHHHHHhcccCCCeeEEE---eCCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCCHH
Q 013869 4 FKAAYKKGSMARDSVAIR---ADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE 80 (435)
Q Consensus 4 ~~~~~~~~~~~p~~~al~---~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~~~ 80 (435)
.++|.++++++|+++|+. ++++++||+||.++++++|++|+++ |+++||+|+++++|+++
T Consensus 3 ~~l~~~~a~~~p~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~-----------------Gv~~gd~V~i~~~~~~~ 65 (503)
T 4fuq_A 3 ANLFARLFDKLDDPHKLAIETAAGDKISYAELVARAGRVANVLVAR-----------------GLQVGDRVAAQTEKSVE 65 (503)
T ss_dssp CCHHHHHHSCCSCTTSEEEEETTCCEEEHHHHHHHHHHHHHHHHHT-----------------TCCTTCEEEEECCSCHH
T ss_pred hhHHHHHHHhCCCCceEEEecCCCcEEEHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEECCCCHH
Confidence 457888999999999998 4678999999999999999999995 99999999999999999
Q ss_pred HHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHHhccCCccccCCCCCCCCCccccccchh
Q 013869 81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQ 160 (435)
Q Consensus 81 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (435)
+++++|||+++|++++|+++.++.+++.++++.++++++|++++..+.+..........+..+.................
T Consensus 66 ~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (503)
T 4fuq_A 66 ALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVGATVETLGPDGRGSLTDAAAGASE 145 (503)
T ss_dssp HHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGTTTTHHHHHHHTCEEEECCTTSCSHHHHHHHTSCS
T ss_pred HHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCcEEEECchhhHHHHHHHhhcCceEEEecCCcccccchhhhcCCC
Confidence 99999999999999999999999999999999999999999987765554444333322222211110000000000011
Q ss_pred hhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhccCCCCCeeEEeecchhhhHHHHHHHHHHHcCCEE
Q 013869 161 AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATV 240 (435)
Q Consensus 161 ~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~ 240 (435)
........++++++++|||||||.||+|.++|+++.+........+++.+++++++.+|++|..+++..++.++..|+++
T Consensus 146 ~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~ 225 (503)
T 4fuq_A 146 AFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSM 225 (503)
T ss_dssp CCCCCCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCSSSHCCCCCCHHHHHHTTCEE
T ss_pred CcCcCCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEeCChHHHHHHHHHHHHHHHhCCEE
Confidence 11223456799999999999999999999999999999999999999999999999999999998766678899999999
Q ss_pred EEcCCcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccccEEEEecCCCCCHHHH
Q 013869 241 EFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVM 320 (435)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~i~~~G~~l~~~l~ 320 (435)
++.+.+++..+++. +. ++|++.++|+++..+++.... ....++++|.+++||+++++++.
T Consensus 226 ~~~~~~~~~~~~~~----------i~--~~t~~~~~P~~~~~l~~~~~~--------~~~~~~~lr~~~~gg~~l~~~~~ 285 (503)
T 4fuq_A 226 IFLPKFDPDKILDL----------MA--RATVLMGVPTFYTRLLQSPRL--------TKETTGHMRLFISGSAPLLADTH 285 (503)
T ss_dssp EECSSCCHHHHHHH----------HT--TCCEEEECHHHHHHHHTCTTC--------STTTTTTCCEEEECSSCCCHHHH
T ss_pred EEcCCCCHHHHHHH----------Hh--hcCEEEEHHHHHHHHHhCCCc--------cccchhhcEEEEECCCCCCHHHH
Confidence 99999999998888 44 799999999999999886432 23457899999999999999999
Q ss_pred HHHHHHhCCcccccccCccccchhccCCCCCCCCCccceecCCCeEEEec-CCCCCCCCc-cceEEEecCCccccccCCc
Q 013869 321 QQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAE-DESGSDAAG-VGEICVKSPSLFKEYWKLP 398 (435)
Q Consensus 321 ~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~~~~~~~~-~Gel~v~~~~~~~gy~~~~ 398 (435)
+.|.+.++.++++.||+||+++.++.........+++|+|+++++++|+| ++++.++.+ .|||+++|++++.||+++|
T Consensus 286 ~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~GEl~v~g~~v~~GY~~~~ 365 (503)
T 4fuq_A 286 REWSAKTGHAVLERYGMTETNMNTSNPYDGDRVPGAVGPALPGVSARVTDPETGKELPRGDIGMIEVKGPNVFKGYWRMP 365 (503)
T ss_dssp HHHHHHHSCCEEECCEETTTEECBCCCSSSCCCTTEEEEBCTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCCCBTTCH
T ss_pred HHHHHHhCCCccceEcccccCcccccCCCCCCcCCccccCCCCeEEEEEECCCCCCCcCCCceEEEEECCchhhhhcCCh
Confidence 99999999999999999999887766555566778999999999999999 777877777 7999999999999999999
Q ss_pred hhcccccccCCccccCceEEEcCCccEEEecccccCC
Q 013869 399 KVTKDSFTADGFFKTGDTGKQDEDGYYIILGRKGIYF 435 (435)
Q Consensus 399 ~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~gR~~d~i 435 (435)
+.+.+.|+.+|||+|||+|++|+||++++.||+||+|
T Consensus 366 ~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~i 402 (503)
T 4fuq_A 366 EKTKSEFRDDGFFITGDLGKIDERGYVHILGRGKDLV 402 (503)
T ss_dssp HHHHHTBCTTSCEEEEEEEEECTTCEEEECCSSTTCE
T ss_pred hhhHhhhCCCCCeEcceeEEEcCCCcEEEEecCCCEE
Confidence 9999999989999999999999999999999999986
No 3
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=100.00 E-value=1.4e-65 Score=511.93 Aligned_cols=397 Identities=20% Similarity=0.281 Sum_probs=333.6
Q ss_pred ChHHHHHHHhcccCCCeeEEEeCCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCCHH
Q 013869 1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE 80 (435)
Q Consensus 1 ~~i~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~~~ 80 (435)
+|+.+.|.++++++||++|+++.++++||+||.++++++|++|++ .|+++||+|+++++|+++
T Consensus 25 ~tl~~~l~~~a~~~p~~~A~~~~~~~~Ty~eL~~~~~~lA~~L~~-----------------~Gv~~gd~V~i~~~~~~~ 87 (539)
T 1mdb_A 25 ETFGDLLRDRAAKYGDRIAITCGNTHWSYRELDTRADRLAAGFQK-----------------LGIQQKDRVVVQLPNIKE 87 (539)
T ss_dssp CCHHHHHHHHHHHHTTSEEEEETTEEEEHHHHHHHHHHHHHHHHH-----------------HTCCTTCEEEECCCSSHH
T ss_pred CCHHHHHHHHHHHCCCCEEEEeCCCcccHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEcCCcHH
Confidence 378999999999999999999999999999999999999999999 599999999999999999
Q ss_pred HHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhh-----HHHHHHHHhccCC-c-cccCCCCCCCCCcc
Q 013869 81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDY-----REVLQNVASKSGA-K-FSLIPPVPNVSSET 153 (435)
Q Consensus 81 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~-----~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~ 153 (435)
+++++|||+++|++++|+++.++.+++.++++.++++++|++++. ...+.......+. . +....... ...
T Consensus 88 ~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 164 (539)
T 1mdb_A 88 FFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAE---EFL 164 (539)
T ss_dssp HHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCT---TSE
T ss_pred HHHHHHHHHHcCeEEecCCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCCCccEEEEcCCcc---chh
Confidence 999999999999999999999999999999999999999998753 1222222222221 1 11111100 001
Q ss_pred ccccc-hhhhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhccCCCCCeeEEeecchhhhHHHH-HHH
Q 013869 154 TVFDQ-SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFN-ALL 231 (435)
Q Consensus 154 ~~~~~-~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~-~~~ 231 (435)
...+. ..........++++++++|||||||.||||.++|+++.+.+......+++.+++++++.+|++|.+++.. .++
T Consensus 165 ~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~ 244 (539)
T 1mdb_A 165 PLEDLHTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVL 244 (539)
T ss_dssp EGGGCCCCCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHH
T ss_pred hhhhccccccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhhCCCCCCEEEEeecccccchhhHHHHH
Confidence 11000 0011123456789999999999999999999999999999998888889999999999999999999865 689
Q ss_pred HHHHcCCEEEEcCCcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccccEEEEec
Q 013869 232 APLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCG 311 (435)
Q Consensus 232 ~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~i~~~ 311 (435)
.++..|+++++.+.+++..+++. ++++++|++.++|+++..+++.. .....+++++|.+++|
T Consensus 245 ~~l~~G~~~v~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~--------~~~~~~l~~lr~~~~g 306 (539)
T 1mdb_A 245 GVLYAGGRVVLSPSPSPDDAFPL----------IEREKVTITALVPPLAMVWMDAA--------SSRRDDLSSLQVLQVG 306 (539)
T ss_dssp HHHHTTCEEEECSSSSHHHHHHH----------HHHHTCSEEEECHHHHHHHHHHH--------HHCCCCCTTCCEEEEE
T ss_pred HHHHhCCEEEECCCCCHHHHHHH----------HHHcCCeEEEccHHHHHHHHhCc--------cccCCCccceeEEEEc
Confidence 99999999999999999998888 56689999999999999998753 2234578999999999
Q ss_pred CCCCCHHHHHHHHHHhCCcccccccCccccchhccCCCC-CCCCCccceecCC-CeEEEecCCCCCCCCc-cceEEEecC
Q 013869 312 SSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRG-ARKAGTVGNPLPG-VQVKIAEDESGSDAAG-VGEICVKSP 388 (435)
Q Consensus 312 G~~l~~~l~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~-~~~~~~~G~p~~~-~~~~i~d~~~~~~~~~-~Gel~v~~~ 388 (435)
|+++++++.++|.+.+++++++.||+||++..++..... .....++|+|+++ .+++|+|++++.++.+ .|||+++|+
T Consensus 307 G~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d~~~~~~~~g~~GEl~v~g~ 386 (539)
T 1mdb_A 307 GAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPYDESRVWDDHDRDVKPGETGHLLTRGP 386 (539)
T ss_dssp SSCCCHHHHTTHHHHTCSEEEEEEECTTSCEEECCTTSCHHHHHHCCCEESSTTCEEEEECTTSCBCCTTCCEEEEEECT
T ss_pred CCCCCHHHHHHHHHHhCCcEEEEEcCCCCcccccCCCCcHHhcCCCCCcccCCCceEEEECCCCCCCcCCCcceEEeeCc
Confidence 999999999999999999999999999976544332111 1234689999976 5899999999888777 799999999
Q ss_pred CccccccCCchhcccccccCCccccCceEEEcCCccEEEecccccCC
Q 013869 389 SLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRKGIYF 435 (435)
Q Consensus 389 ~~~~gy~~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~gR~~d~i 435 (435)
+++.||+++|+.|.+.|+.+|||+|||+|++|+||+|++.||+||+|
T Consensus 387 ~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~~GR~dd~i 433 (539)
T 1mdb_A 387 YTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQI 433 (539)
T ss_dssp TSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEEGGGCE
T ss_pred ccchhhcCChhhhhhhccCCCCeecCceEEECCCCcEEEeccccceE
Confidence 99999999999999999889999999999999999999999999986
No 4
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=100.00 E-value=1.5e-65 Score=509.02 Aligned_cols=396 Identities=25% Similarity=0.385 Sum_probs=334.6
Q ss_pred ChHHHHHHHhcccCCCeeEEEeCCc--ccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCC
Q 013869 1 MEVFKAAYKKGSMARDSVAIRADQK--SYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPS 78 (435)
Q Consensus 1 ~~i~~~~~~~~~~~p~~~al~~~~~--~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~ 78 (435)
+|+.++|.++++++|+++|+++.++ ++||+||.++++++|++|++. |+++||+|+++++|+
T Consensus 16 ~~l~~~l~~~a~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~-----------------Gv~~gd~V~i~~~~~ 78 (517)
T 3r44_A 16 KNIGWMLRQRATVSPRLQAYVEPSTDVRMTYAQMNALANRCADVLTAL-----------------GIAKGDRVALLMPNS 78 (517)
T ss_dssp GCHHHHHHHHHHHSTTSEEEEEGGGTEEEEHHHHHHHHHHHHHHHHHT-----------------TCCTTCEEEEECCSS
T ss_pred cCHHHHHHHHHHhCCCCeEEEeCCcCceeeHHHHHHHHHHHHHHHHHc-----------------CCCCcCEEEEEcCCC
Confidence 4789999999999999999998766 999999999999999999994 999999999999999
Q ss_pred HHHHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHHhccCCccccCCCCCCCCCccc-ccc
Q 013869 79 FEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETT-VFD 157 (435)
Q Consensus 79 ~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 157 (435)
+++++++|||+++|++++|+++.++.+++.++++.++++++|++....+.+.............+. ......... ...
T Consensus 79 ~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 157 (517)
T 3r44_A 79 VEFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPGTVTD-WIGADSLAERLRS 157 (517)
T ss_dssp HHHHHHHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHSSSCCTTCCE-EEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcEEEecCcccCHHHHHHHHHhcCceEEEECCchHHHHHHHHhccCCccEEEE-ccCcccHHHHhhc
Confidence 999999999999999999999999999999999999999999999988877766543321110000 000000000 000
Q ss_pred chhhhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhccCCCCCeeEEeecchhhhHHHHHHHHHHHcC
Q 013869 158 QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAG 237 (435)
Q Consensus 158 ~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G 237 (435)
.....+.....++++++++|||||||.||+|.++|+++.+.+......+++.+++++++.+|++|..++.. .+.++..|
T Consensus 158 ~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~~~~G 236 (517)
T 3r44_A 158 AAADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAALTT-VIFSAMRG 236 (517)
T ss_dssp CCCCCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHSCCCTTCEEEECSCTTSHHHHHH-HHHHHHHT
T ss_pred cCcCCCCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHHH-HHHHHhcC
Confidence 01111233556899999999999999999999999999999999999999999999999999999999875 44445599
Q ss_pred CEEEEcCCcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccccEEEEecCCCCCH
Q 013869 238 ATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPL 317 (435)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~i~~~G~~l~~ 317 (435)
+++++.+.+++..+++. +.++++|++.++|+++..+.+.. .....+++++|.+++||+++++
T Consensus 237 ~~~v~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~--------~~~~~~~~~lr~i~~gGe~l~~ 298 (517)
T 3r44_A 237 VTLISMPQFDATKVWSL----------IVEERVCIGGAVPAILNFMRQVP--------EFAELDAPDFRYFITGGAPMPE 298 (517)
T ss_dssp CEEEECSSCCHHHHHHH----------HHHTTCCEEEECHHHHHHHHHSH--------HHHHCCCTTCCEEEECSSCCCH
T ss_pred eEEEEeCCCCHHHHHHH----------HHHhCCeEEEeHHHHHHHHHhCc--------ccccCCCCcccEEEECCCCCCH
Confidence 99999999999999998 56689999999999999998752 2344578899999999999999
Q ss_pred HHHHHHHHHhCCcccccccCccccchhcc--CCCCCCCCCccceecCCCeEEEecCCCCCCCCccceEEEecCCcccccc
Q 013869 318 PVMQQWETITGHRLLERYGMTEFVMAISN--PLRGARKAGTVGNPLPGVQVKIAEDESGSDAAGVGEICVKSPSLFKEYW 395 (435)
Q Consensus 318 ~l~~~~~~~~~~~l~~~YG~tE~~~~~~~--~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~~Gel~v~~~~~~~gy~ 395 (435)
++.+.|.+. ++++++.||+||+++.++. ........+++|+|.++++++|+|+++...+.+.|||+++|++++.||+
T Consensus 299 ~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g~GEl~v~g~~v~~GY~ 377 (517)
T 3r44_A 299 ALIKIYAAK-NIEVVQGYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVRGDDGVIREHGEGEVVIKSDILLKEYW 377 (517)
T ss_dssp HHHHHHHHT-TCEEEEEEECGGGTTCEEEECGGGTTTTTTCCBEECTTEEEEEECTTSCEESSEEEEEEEEETTSCSEET
T ss_pred HHHHHHHhc-CCcEEEeecccccccceeecCCccccccCCCCCcCCCCeEEEEECCCCCCCCCCCeEEEEeCcchhhhhC
Confidence 999999987 9999999999999765442 2222456789999999999999999998888789999999999999999
Q ss_pred CCchhcccccccCCccccCceEEEcCCccEEEecccccCC
Q 013869 396 KLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRKGIYF 435 (435)
Q Consensus 396 ~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~gR~~d~i 435 (435)
++|+.+.+.| .+|||+|||+|++|+||++++.||+||+|
T Consensus 378 ~~p~~t~~~f-~~g~~~TGDl~~~~~dG~l~~~GR~dd~i 416 (517)
T 3r44_A 378 NRPEATRDAF-DNGWFRTGDIGEIDDEGYLYIKDRLKDMI 416 (517)
T ss_dssp TCHHHHHHTE-ETTEEEEEEEEEECTTSCEEEEECGGGCE
T ss_pred CChhhhHhhh-cCCCEecceeEEEcCCeeEEEecCCcCEE
Confidence 9999999999 58999999999999999999999999986
No 5
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=100.00 E-value=3.9e-65 Score=509.99 Aligned_cols=400 Identities=23% Similarity=0.349 Sum_probs=334.1
Q ss_pred ChHHHHHHHhcccCCCeeEEEeCC--------cccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEE
Q 013869 1 MEVFKAAYKKGSMARDSVAIRADQ--------KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIG 72 (435)
Q Consensus 1 ~~i~~~~~~~~~~~p~~~al~~~~--------~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~ 72 (435)
+|+.+.|.++++++||++|+++.+ +++||+||.++++++|++|++. |+++||+|+
T Consensus 19 ~~l~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~-----------------Gv~~gd~V~ 81 (549)
T 3g7s_A 19 ISLADRIDAAAEKFGEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISRK-----------------GVRKGEHVG 81 (549)
T ss_dssp CCTTHHHHHHHHHHTTSEEEEEESSCCCCSSCSEEEHHHHHHHHHHHHHHHHHT-----------------TCCTTCEEE
T ss_pred CCHHHHHHHHHHhCCCceEEEeCCCcccccccceeeHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEE
Confidence 578999999999999999999876 8999999999999999999994 999999999
Q ss_pred EEeCCCHHHHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHHhccCCccccCCCCCCCCCc
Q 013869 73 IVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSE 152 (435)
Q Consensus 73 i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (435)
|+++|++++++++|||+++|++++|+++.++.+++.++++.++++++|++....+.+.............+... .....
T Consensus 82 i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 160 (549)
T 3g7s_A 82 VCIPNSIDYVMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEKTGVERVFVVGG-EVNSL 160 (549)
T ss_dssp EECCSSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHTTSCCCEEEEETC-SSSCH
T ss_pred EECCCCHHHHHHHHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHHhhCCCcEEEEeCC-CCcCH
Confidence 99999999999999999999999999999999999999999999999999998887776655443221111110 11110
Q ss_pred cccccc-hhhhhccCCC-CCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhccCCCCCeeEEeecchhhhHHHHHH
Q 013869 153 TTVFDQ-SQAEKMDGQR-GEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNAL 230 (435)
Q Consensus 153 ~~~~~~-~~~~~~~~~~-~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~ 230 (435)
...... .......... ++++++|+|||||||.||+|.++|+++.+.+......+++.+.++++.++|++|..++.. +
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~-~ 239 (549)
T 3g7s_A 161 SEVMDSGSEDFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSHMDTIVGCMPMFHSAEFGL-V 239 (549)
T ss_dssp HHHHHHSCSCCCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHHCCCTTCEEECCSCTTSHHHHHH-H
T ss_pred HHHHhcCccccccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHcCCCCCCEEEEeCcHHHHHHHHH-H
Confidence 000000 0001112223 389999999999999999999999999999999999999999999999999999999875 8
Q ss_pred HHHHHcCCEEEEcCCcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccccEEEEe
Q 013869 231 LAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMC 310 (435)
Q Consensus 231 ~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~i~~ 310 (435)
+.++..|+++++.+.+++..+++. +.++++|++.++|+++..|++..+... ...+++++|.+++
T Consensus 240 ~~~l~~G~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~~~~------~~~~~~~lr~~~~ 303 (549)
T 3g7s_A 240 NLMVTVGNEYVVMGMFNQEMLAEN----------IEKYKGTFSWAVPPALNVLVNTLESSN------KTYDWSYLKVFAT 303 (549)
T ss_dssp TTHHHHCCEEEEESSCCHHHHHHH----------HHHTTCCEEEECHHHHHHHHHHHHHSC------CCCCCTTCCEEEE
T ss_pred HHHHhcCceEEEcCCCCHHHHHHH----------HHHhCCeEEEeCCHHHHHHHhhhhhhc------ccCCccceeEEEe
Confidence 889999999999999999999888 566999999999999999987532111 1246789999999
Q ss_pred cCCCCCHHHHHHHHHH----hC---CcccccccCccccchhccCC-CCCCCCCccceecCCCeEEEec-CCCCCCCCc-c
Q 013869 311 GSSALPLPVMQQWETI----TG---HRLLERYGMTEFVMAISNPL-RGARKAGTVGNPLPGVQVKIAE-DESGSDAAG-V 380 (435)
Q Consensus 311 ~G~~l~~~l~~~~~~~----~~---~~l~~~YG~tE~~~~~~~~~-~~~~~~~~~G~p~~~~~~~i~d-~~~~~~~~~-~ 380 (435)
||+++++++.+.|.+. ++ +++++.||+||++.+++... .......++|+|+++++++|+| ++++.++.+ .
T Consensus 304 gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~ 383 (549)
T 3g7s_A 304 GAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPPLRLDKSTTQGVPMSDIELKVISLEDGRELGVGES 383 (549)
T ss_dssp ESSCCCHHHHHHHHHHHHHHSSCTTCEEEEEEECGGGSSEEEECCGGGGGGTTSCCEECTTCEEEEECSSSCCEECTTCC
T ss_pred CCccCCHHHHHHHHHHHHhhcCCccccccceEeccccchhhhcCCccccCcCCCccccCCCCEEEEEeCCCCcCCCCCCc
Confidence 9999999999999988 56 89999999999987665433 2335678899999999999999 777777766 7
Q ss_pred ceEEEecCCccccccCCchhcccccc--cCC--ccccCceEEEcCCccEEEecccccCC
Q 013869 381 GEICVKSPSLFKEYWKLPKVTKDSFT--ADG--FFKTGDTGKQDEDGYYIILGRKGIYF 435 (435)
Q Consensus 381 Gel~v~~~~~~~gy~~~~~~~~~~~~--~~g--~~~TGD~g~~~~dG~l~~~gR~~d~i 435 (435)
|||+++|++++.||+++++.+++.|. .+| ||+|||+|++|+||+++|.||.||+|
T Consensus 384 GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~g~~~~~TGDl~~~~~dG~l~~~GR~dd~i 442 (549)
T 3g7s_A 384 GEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVI 442 (549)
T ss_dssp EEEEEESTTSCSEETTCTTGGGTSEEECTTCCEEEEEEEEEEECTTSCEEEEEEC----
T ss_pred eEEEEECcchhhhhCCChhhhhhhhhccCCCCceEccCcEEEEcCCceEEEeccccceE
Confidence 99999999999999999999999984 567 99999999999999999999999986
No 6
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=100.00 E-value=4.3e-65 Score=509.82 Aligned_cols=399 Identities=22% Similarity=0.299 Sum_probs=325.9
Q ss_pred ChHHHHHHHhcccCCCeeEEE---e--CCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEe
Q 013869 1 MEVFKAAYKKGSMARDSVAIR---A--DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75 (435)
Q Consensus 1 ~~i~~~~~~~~~~~p~~~al~---~--~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~ 75 (435)
+|+.++|.++++++|+++|++ + .++++||+||.++++++|++|++ .|+++||+|+|++
T Consensus 20 ~tl~~~l~~~a~~~p~~~a~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~-----------------~Gv~~gd~V~i~~ 82 (550)
T 3rix_A 20 GTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKR-----------------YGLNTNHRIVVCS 82 (550)
T ss_dssp SCHHHHHHHHHHHHHTSTTCEEEEETTTCCEEEHHHHHHHHHHHHHHHHH-----------------HTCCTTCEEEEEC
T ss_pred CCHHHHHHHHHHhCCCCceEEEeeecCCCcEeEHHHHHHHHHHHHHHHHH-----------------hCCCCCCEEEEEc
Confidence 478999999999999999986 3 46899999999999999999999 5999999999999
Q ss_pred CCCHHHHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHHhccCC--ccccCCCCCCCCCcc
Q 013869 76 KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGA--KFSLIPPVPNVSSET 153 (435)
Q Consensus 76 ~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 153 (435)
+|++++++++|||+++|++++|+++.++.+++.++++.++++++|++.+..+.+.......+. .+..+..........
T Consensus 83 ~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (550)
T 3rix_A 83 ENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQ 162 (550)
T ss_dssp SSCTTTHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCTTCCEEEETTCSSCBTTBC
T ss_pred CCcccHHHHHHHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHHhhCCCcceEEEEcCCccccCcc
Confidence 999999999999999999999999999999999999999999999999988877766554432 112221111111100
Q ss_pred ccccch-----------hhhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHh---ccCCCCCeeEEeec
Q 013869 154 TVFDQS-----------QAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEA---WEYTSADQFLHCLP 219 (435)
Q Consensus 154 ~~~~~~-----------~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~---~~~~~~~~~l~~~p 219 (435)
...+.. ...+.....++++++|+|||||||.||+|.++|+++...+...... .++.+.+++++.+|
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p 242 (550)
T 3rix_A 163 SMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVP 242 (550)
T ss_dssp BHHHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSC
T ss_pred cHHHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCCcEEEEech
Confidence 000000 0011122245789999999999999999999999998887776554 46788999999999
Q ss_pred chhhhHHHHHHHHHHHcCCEEEEcCCcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhh
Q 013869 220 LHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASA 299 (435)
Q Consensus 220 l~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~ 299 (435)
++|..+++ .++.++..|+++++.+.+++..+++. ++++++|++.++|+++..+++... ...
T Consensus 243 ~~~~~g~~-~~~~~l~~G~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~--------~~~ 303 (550)
T 3rix_A 243 FHHGFGMF-TTLGYLICGFRVVLMYRFEEELFLRS----------LQDYKIQSALLVPTLFSFFAKSTL--------IDK 303 (550)
T ss_dssp TTSHHHHH-HHHHHHHHTCEEEECSSCCHHHHHHH----------HHHTTCSEEEECHHHHHHHHHCCG--------GGG
T ss_pred HHHHHHHH-HHHHHHHcCCEEEEeCCCCHHHHHHH----------HHHcCCeEEEeCcHHHHHHHhCcc--------ccc
Confidence 99999986 58889999999999999999998888 566999999999999999987532 233
Q ss_pred hhccccEEEEecCCCCCHHHHHHHHHHhCCc-ccccccCccccchhccCCCCCCCCCccceecCCCeEEEec-CCCCCCC
Q 013869 300 SAAKQLRLMMCGSSALPLPVMQQWETITGHR-LLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAE-DESGSDA 377 (435)
Q Consensus 300 ~~l~~lr~i~~~G~~l~~~l~~~~~~~~~~~-l~~~YG~tE~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~~~~~~ 377 (435)
.+++++|.+++||+++++++.+.|.+.++.. +++.||+||+++.++.........+++|+|+++++++|+| ++++.++
T Consensus 304 ~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d~~~~~~~~ 383 (550)
T 3rix_A 304 YDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLG 383 (550)
T ss_dssp SCCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCTTCCCTTEEEEECTTCEEEEECTTTCCBCC
T ss_pred cCcccccEEEEecCCCCHHHHHHHHHHcCCCccccccCcCccccceecCCCCCCCCCCcccccCCcEEEEEeCCCCcCCC
Confidence 4688999999999999999999999999875 8999999999877665555556788999999999999999 4566666
Q ss_pred Cc-cceEEEecCCccccccCCchhcccccccCCccccCceEEEcCCccEEEecccccCC
Q 013869 378 AG-VGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRKGIYF 435 (435)
Q Consensus 378 ~~-~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~gR~~d~i 435 (435)
.+ .|||+++|++++.||+++|+.+.+.|+.+|||+|||+|++|+||++++.||+||+|
T Consensus 384 ~g~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~i 442 (550)
T 3rix_A 384 VNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLI 442 (550)
T ss_dssp TTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEC-------
T ss_pred CCCCeEEEEeCCCcchhhcCChhhhhhhcCCCCCeecCcEEEEeCCceEEEEecchhee
Confidence 66 79999999999999999999999999889999999999999999999999999986
No 7
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=100.00 E-value=3.2e-65 Score=509.87 Aligned_cols=400 Identities=17% Similarity=0.246 Sum_probs=331.5
Q ss_pred ChHHHHHHHhcccCCCeeEEEeCCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCCHH
Q 013869 1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE 80 (435)
Q Consensus 1 ~~i~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~~~ 80 (435)
+|+.++|.++++++||++|+++.++++||+||.++++++|++|+++ |+++||+|+++++|+++
T Consensus 30 ~tl~~~l~~~a~~~p~~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~~-----------------Gv~~gd~V~i~~~n~~~ 92 (544)
T 3o83_A 30 QPLTRILTVGVQSHPHSLAIICGERQLSYIELDRLSTNLATRLAEK-----------------GLGKGDTALVQLPNVAE 92 (544)
T ss_dssp CCTTHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHT-----------------TCCTTCEEEECCCSSHH
T ss_pred CCHHHHHHHHHHhCCCceEEEcCCCceeHHHHHHHHHHHHHHHHHC-----------------CCCCCCEEEEECCCCHH
Confidence 4688999999999999999999999999999999999999999994 99999999999999999
Q ss_pred HHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhH-----HHHHHHHhccCC--ccccCCCCCCCCCcc
Q 013869 81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYR-----EVLQNVASKSGA--KFSLIPPVPNVSSET 153 (435)
Q Consensus 81 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 153 (435)
+++++|||+++|++++|+++.++.+++.++++.+++++++++.... ............ .+.............
T Consensus 93 ~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (544)
T 3o83_A 93 FYIVFFALLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQATDFGLL 172 (544)
T ss_dssp HHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTCCCSEEEEETCCTTSEEHH
T ss_pred HHHHHHHHHHhCcEEecCCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhcccCcceEEEecCCccccchh
Confidence 9999999999999999999999999999999999999999987653 222222222111 111111100000000
Q ss_pred cccc--chhhhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhccCCCCCeeEEeecchhhhHHHH-HH
Q 013869 154 TVFD--QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFN-AL 230 (435)
Q Consensus 154 ~~~~--~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~-~~ 230 (435)
.... ...........++++++++|||||||.||+|.++|+++...+......+++.+++++++.+|++|.+++.. .+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~ 252 (544)
T 3o83_A 173 DWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPHNFMLSSPGA 252 (544)
T ss_dssp HHHHSCCSSCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHSSHH
T ss_pred hhhhcccccccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHhCCCCCCeEEEecCcceEeecchHHH
Confidence 0000 00001113456799999999999999999999999999999999999999999999999999999998764 58
Q ss_pred HHHHHcCCEEEEcCCcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccccEEEEe
Q 013869 231 LAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMC 310 (435)
Q Consensus 231 ~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~i~~ 310 (435)
+.++..|+++++.+.+++..+++. ++++++|++.++|+++..+++.... ...+++++|.+++
T Consensus 253 ~~~l~~G~~~v~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~~--------~~~~~~~lr~i~~ 314 (544)
T 3o83_A 253 LGVLHAGGCVVMAPNPEPLNCFSI----------IQRHQVNMASLVPSAVIMWLEKAAQ--------YKDQIQSLKLLQV 314 (544)
T ss_dssp HHHHHTTCEEEECSSCCHHHHHHH----------HHHHTCCEEEECHHHHHHHHHHHTT--------THHHHTTCCEEEE
T ss_pred HHHHHcCCEEEECCCCCHHHHHHH----------HHHHCCCEEEechHHHHHHHhchhh--------ccccCCcceEEEE
Confidence 899999999999999999998888 5668999999999999999886432 2346789999999
Q ss_pred cCCCCCHHHHHHHHHHhCCcccccccCccccchhccCCCC-CCCCCccceec-CCCeEEEecCCCCCCCCc-cceEEEec
Q 013869 311 GSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRG-ARKAGTVGNPL-PGVQVKIAEDESGSDAAG-VGEICVKS 387 (435)
Q Consensus 311 ~G~~l~~~l~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~-~~~~~~~G~p~-~~~~~~i~d~~~~~~~~~-~Gel~v~~ 387 (435)
||+++++++.+.|.+.+++++++.||+||++..++..... .....++|+|+ ++++++|+|++++.++.+ .|||+++|
T Consensus 315 gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d~~~~~~~~g~~GEl~v~g 394 (544)
T 3o83_A 315 GGASFPESLARQVPEVLNCKLQQVFGMAEGLVNYTRLDDSDEQIFTTQGRPISSDDEIKIVDEQYREVPEGEIGMLATRG 394 (544)
T ss_dssp ESSCCCHHHHTHHHHHHCSEEEEEEECTTSCEEECCTTSCHHHHHHCCCEESCTTCEEEEECTTSCBCCTTCCEEEEEEC
T ss_pred cCCCCCHHHHHHHHHHhCCcEEeeeccccccceeecCCCchhhccCCCceecCCCcEEEEECCCCCCCCCCCeeEEEEec
Confidence 9999999999999999999999999999987655432221 22346789996 899999999999988777 79999999
Q ss_pred CCccccccCCchhcccccccCCccccCceEEEcCCccEEEecccccCC
Q 013869 388 PSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRKGIYF 435 (435)
Q Consensus 388 ~~~~~gy~~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~gR~~d~i 435 (435)
++++.||+++|+.+.+.|+.+|||+|||+|++|+||++++.||+||+|
T Consensus 395 ~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~~GR~dd~i 442 (544)
T 3o83_A 395 PYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTPDGNLRVVGRIKDQI 442 (544)
T ss_dssp TTSCSCCTTCHHHHHHHBCTTCCEEEEEEEEECTTSCEEEEEEEC---
T ss_pred CCcchhhcCChhhhhhhCCCCCCeEcCCEEEEcCCCCEEEEeecCCEE
Confidence 999999999999999999889999999999999999999999999986
No 8
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=100.00 E-value=2.3e-64 Score=503.32 Aligned_cols=397 Identities=20% Similarity=0.312 Sum_probs=329.2
Q ss_pred ChHHHHHHHhcccCCCeeEEE----eCCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeC
Q 013869 1 MEVFKAAYKKGSMARDSVAIR----ADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAK 76 (435)
Q Consensus 1 ~~i~~~~~~~~~~~p~~~al~----~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~ 76 (435)
+|+.+.|.++++++||++|++ ..++++||+||.++++++|++|++. |+++||+|+++++
T Consensus 18 ~~l~~~l~~~a~~~p~~~a~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~-----------------Gv~~gd~V~i~~~ 80 (541)
T 1v25_A 18 LNLWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRAL-----------------GVGVGDRVATLGF 80 (541)
T ss_dssp CCTHHHHHHHHHHSTTCEEEEECTTSCEEEEEHHHHHHHHHHHHHHHHHT-----------------TCCTTCEEEEECC
T ss_pred CCHHHHHHHHHHhCCCceEEEEecCCCCceecHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEEcC
Confidence 478899999999999999999 4568999999999999999999994 9999999999999
Q ss_pred CCHHHHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHHhccCC--ccccCCCCCCCCCccc
Q 013869 77 PSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGA--KFSLIPPVPNVSSETT 154 (435)
Q Consensus 77 ~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 154 (435)
|++++++++|||+++|++++|+++.++.+++.++++.++++++|++++..+.+.......+. .+..+..... .....
T Consensus 81 n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 159 (541)
T 1v25_A 81 NHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAP-EGYLA 159 (541)
T ss_dssp SSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCSSCCEEEESSSCCC-TTCEE
T ss_pred CcHHHHHHHHHHHhcCcEEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHHHhhCCCccEEEEecCCCC-ccccc
Confidence 99999999999999999999999999999999999999999999999888777665443322 1111111100 00000
Q ss_pred cccch-hhhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHH--HHhccCCCCCeeEEeecchhhhHHHHHHH
Q 013869 155 VFDQS-QAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQML--TEAWEYTSADQFLHCLPLHHVHGLFNALL 231 (435)
Q Consensus 155 ~~~~~-~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~--~~~~~~~~~~~~l~~~pl~~~~g~~~~~~ 231 (435)
..+.. .........++++++++|||||||.||+|.++|+++....... ...+++.+.|++++.+|++|..++. .++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~-~~~ 238 (541)
T 1v25_A 160 YEEALGEEADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWC-LPY 238 (541)
T ss_dssp HHHHCCSCCCCCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHHHT-HHH
T ss_pred HHHHhhccCCcccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccccCCCCCEEEEeccchhhhHHH-HHH
Confidence 00000 0001134567899999999999999999999999998766552 2455788999999999999999985 478
Q ss_pred HHHHcCCEEEEcCC-cchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccccEEEEe
Q 013869 232 APLYAGATVEFMPK-FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMC 310 (435)
Q Consensus 232 ~~l~~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~i~~ 310 (435)
.++..|+++++.+. +++..+++. +.++++|++.++|+++..|++..+ ....+++++|.+++
T Consensus 239 ~~l~~G~~~v~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~--------~~~~~l~~lr~i~~ 300 (541)
T 1v25_A 239 AATLVGAKQVLPGPRLDPASLVEL----------FDGEGVTFTAGVPTVWLALADYLE--------STGHRLKTLRRLVV 300 (541)
T ss_dssp HHHHHTCEEEECTTCCSHHHHHHH----------HHHTTCCEEEECHHHHHHHHHHHH--------HHTCCCSSCCEEEE
T ss_pred HHHhcCceEEeeCCCCCHHHHHHH----------HHhcCeeEEecchHHHHHHHhhhh--------ccCCcchhccEEEE
Confidence 89999999999874 688888888 566999999999999999987532 23456899999999
Q ss_pred cCCCCCHHHHHHHHHHhCCcccccccCccccchhccCCCC-----------CCCCCccceecCCCeEEEecCCCCCCCC-
Q 013869 311 GSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRG-----------ARKAGTVGNPLPGVQVKIAEDESGSDAA- 378 (435)
Q Consensus 311 ~G~~l~~~l~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~-----------~~~~~~~G~p~~~~~~~i~d~~~~~~~~- 378 (435)
||+++++++.+.| +.+++++++.||+||++.+++..... .....++|+|+++++++|+|++++.++.
T Consensus 301 gG~~l~~~~~~~~-~~~g~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~g~~~~~~ 379 (541)
T 1v25_A 301 GGSAAPRSLIARF-ERMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVADEEGRPVPKD 379 (541)
T ss_dssp CSSCCCHHHHHHH-HHTTCEEEEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEECTTSCBCCSS
T ss_pred CCCCCCHHHHHHH-HHhCCceeecccccccccceecccccccccccCccccccccCCCCCcCCCcEEEEECCCCCCCCCC
Confidence 9999999999999 66899999999999998765533211 0234689999999999999999888763
Q ss_pred -c-cceEEEecCCccccccCCchhcccccccCCccccCceEEEcCCccEEEecccccCC
Q 013869 379 -G-VGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRKGIYF 435 (435)
Q Consensus 379 -~-~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~gR~~d~i 435 (435)
+ .|||+++|++++.||+++|+.|++.|+.+|||+|||+|++|+||++++.||+||+|
T Consensus 380 ~~~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDlg~~d~dG~l~~~GR~~d~i 438 (541)
T 1v25_A 380 GKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLI 438 (541)
T ss_dssp SCCCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEEEEEEEEECTTCCEEEEEESSCEE
T ss_pred CCcceEEEEeCcchhccccCChhhhhhhccCCCCeEcCCEEEEcCCceEEEeeccccee
Confidence 3 79999999999999999999999999889999999999999999999999999986
No 9
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=100.00 E-value=4.3e-64 Score=501.84 Aligned_cols=397 Identities=23% Similarity=0.317 Sum_probs=332.4
Q ss_pred hHHH-HHHHhcccCCCeeEEEe--CCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCC
Q 013869 2 EVFK-AAYKKGSMARDSVAIRA--DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPS 78 (435)
Q Consensus 2 ~i~~-~~~~~~~~~p~~~al~~--~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~ 78 (435)
|+.+ .|.++++++ +++|+++ .++++||+||.++++++|++|++ .|+++||+|+|+++|+
T Consensus 26 ~l~~~~l~~~~~~~-~~~A~~~~~~~~~~Ty~el~~~~~~lA~~L~~-----------------~Gv~~gd~V~i~~~n~ 87 (548)
T 2d1s_A 26 GTQLRKYMERYAKL-GAIAFTNAVTGVDYSYAEYLEKSCCLGKALQN-----------------YGLVVDGRIALCSENC 87 (548)
T ss_dssp HHHHHHHHHHHHHH-TCEEEEETTTCCEEEHHHHHHHHHHHHHHHHH-----------------HTCCTTCEEEEECSSC
T ss_pred cHHHHHHHhhhccc-CCceEEEcCCCCEeeHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEeCCc
Confidence 6788 888899999 9999997 57899999999999999999999 5999999999999999
Q ss_pred HHHHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHHhccC--CccccCCCCCC---CCCcc
Q 013869 79 FEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSG--AKFSLIPPVPN---VSSET 153 (435)
Q Consensus 79 ~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~--~~~~~~~~~~~---~~~~~ 153 (435)
+++++++|||+++|++++|+++.++.+++.++++.++++++|++++..+.+.......+ ..+..+..... .....
T Consensus 88 ~e~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (548)
T 2d1s_A 88 EEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYRGYQCLD 167 (548)
T ss_dssp TTTHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHCCSEEEECTTTHHHHHHHHHHSTTCCEEEETTCSSCBTTBCBHH
T ss_pred hhHHHHHHHHHhhCCEEeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHhcCCCCCCEEEEeCCcccccccccHH
Confidence 99999999999999999999999999999999999999999999988777665543332 12222211100 00000
Q ss_pred ccccch-hh-hhccCC------CCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHh---ccCCCCCeeEEeecchh
Q 013869 154 TVFDQS-QA-EKMDGQ------RGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEA---WEYTSADQFLHCLPLHH 222 (435)
Q Consensus 154 ~~~~~~-~~-~~~~~~------~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~---~~~~~~~~~l~~~pl~~ 222 (435)
...... .. .+.... .++++++++|||||||.||+|.++|+++.+.+...... +++.+++++++.+|++|
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h 247 (548)
T 2d1s_A 168 TFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHH 247 (548)
T ss_dssp HHHHHTSCTTCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTS
T ss_pred HHHhcCccccCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHH
Confidence 000000 00 011111 23899999999999999999999999999888877666 67889999999999999
Q ss_pred hhHHHHHHHHHHHcCCEEEEcCCcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhc
Q 013869 223 VHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAA 302 (435)
Q Consensus 223 ~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l 302 (435)
..++...++.++ .|+++++.+.+++..+++. ++++++|++.++|+++..|++... ....++
T Consensus 248 ~~g~~~~~~~~l-~G~~~v~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~--------~~~~~l 308 (548)
T 2d1s_A 248 GFGMFTTLGYLI-CGFRVVMLTKFDEETFLKT----------LQDYKCTSVILVPTLFAILNKSEL--------LNKYDL 308 (548)
T ss_dssp HHHHHHHHHHHH-TTCEEEECCCCCHHHHHHH----------HHHTTEEEEEECHHHHHHHHHCSC--------GGGSCC
T ss_pred HHHHHHHHHHHh-cCcEEEEcCCCCHHHHHHH----------HHHcCCcEEEecHHHHHHHHhCcc--------cccccc
Confidence 999876567777 9999999999999998888 566999999999999999987532 123467
Q ss_pred cccEEEEecCCCCCHHHHHHHHHHh-CCcccccccCccccchhccCCCCCCCCCccceecCCCeEEEec-CCCCCCCCc-
Q 013869 303 KQLRLMMCGSSALPLPVMQQWETIT-GHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAE-DESGSDAAG- 379 (435)
Q Consensus 303 ~~lr~i~~~G~~l~~~l~~~~~~~~-~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~~~~~~~~- 379 (435)
+++|.+++||+++++++.+.|.+.| +.++++.||+||++.+++.........+++|+|+++++++|+| ++++.++.+
T Consensus 309 ~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~ 388 (548)
T 2d1s_A 309 SNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPEGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNR 388 (548)
T ss_dssp TTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCTTCCCTTCCBEECTTCEEEEECTTTCCBCCTTC
T ss_pred cceeEEEEcCccCCHHHHHHHHHHcCCCceeeccccccccceeeecCcccCCCCCCCccCCCceEEEEeCCcCccCCCCC
Confidence 8999999999999999999999999 6789999999999876654443445678999999999999999 677777666
Q ss_pred cceEEEecCCccccccCCchhcccccccCCccccCceEEEcCCccEEEecccccCC
Q 013869 380 VGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRKGIYF 435 (435)
Q Consensus 380 ~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~gR~~d~i 435 (435)
.|||+++|++++.||+++|+.+.+.|+.+|||+|||+|++|+||++++.||+||+|
T Consensus 389 ~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~~d~i 444 (548)
T 2d1s_A 389 RGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLI 444 (548)
T ss_dssp CEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEEEEGGGCB
T ss_pred CeEEEECCHHHhhhhcCChHHhhhcccCCcEEEccCEEEEcCCCeEEEeccccceE
Confidence 79999999999999999999999999889999999999999999999999999986
No 10
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=100.00 E-value=7.2e-64 Score=502.70 Aligned_cols=394 Identities=21% Similarity=0.333 Sum_probs=331.7
Q ss_pred HHHHHHhcccCCCeeEEEe-----CCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCC
Q 013869 4 FKAAYKKGSMARDSVAIRA-----DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPS 78 (435)
Q Consensus 4 ~~~~~~~~~~~p~~~al~~-----~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~ 78 (435)
++.|.++|+++||++|+++ .++++||+||.++++++|++|++. |+++||+|+|+++|+
T Consensus 59 ~~~l~~~a~~~pd~~Al~~~~~~g~~~~~Ty~eL~~~~~~~A~~L~~~-----------------Gv~~Gd~V~l~~~~~ 121 (580)
T 3etc_A 59 YDVVDVYARDSPEKLAMIWCDDYGNEKIFTFKDLKYYSDKAANFFVKH-----------------GIGKGDYVMLTLKSR 121 (580)
T ss_dssp HHTHHHHHHHCTTCEEEEEEESSSCEEEEEHHHHHHHHHHHHHHHHHT-----------------TCCTTCEEEEECTTC
T ss_pred HHHHHHHHhhCCCCEEEEEEcCCCCEeEEeHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEEcCCC
Confidence 4899999999999999996 346899999999999999999994 999999999999999
Q ss_pred HHHHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhH--HHHHHHHhccCC---ccccCCCCCCCCCcc
Q 013869 79 FEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYR--EVLQNVASKSGA---KFSLIPPVPNVSSET 153 (435)
Q Consensus 79 ~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~--~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 153 (435)
+++++++|||+++|++++|+++.++.+++.++++.++++++|++.+.. +.+.......+. .+..+.. .......
T Consensus 122 ~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 200 (580)
T 3etc_A 122 YDFWYCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDIPLKKAKVGG-DVLEGWI 200 (580)
T ss_dssp THHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHHHHHCSCCCEEEEESS-SCCTTCE
T ss_pred HHHHHHHHHHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHhhhCCCcceEEEEeCC-ccccccc
Confidence 999999999999999999999999999999999999999999987654 555444433322 1121111 0011111
Q ss_pred ccccch----h----hhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhccCCCCCeeEEeecchhhhH
Q 013869 154 TVFDQS----Q----AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHG 225 (435)
Q Consensus 154 ~~~~~~----~----~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g 225 (435)
...+.. . ........++++++++|||||||.||+|.++|.+++..........++.+.+++++..|++|..+
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (580)
T 3etc_A 201 DFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQNVEDDGLHYTVADSGWGKC 280 (580)
T ss_dssp EHHHHHHHSCSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTSCCCTTCEEEECCCTTSTHH
T ss_pred cHHHHHhhCCcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhhCCCCCceEEEeCChHHHHH
Confidence 100000 0 00012467899999999999999999999999998888777666778899999999999999998
Q ss_pred HHHHHHHHHHcCCEEEEc--CCcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhcc
Q 013869 226 LFNALLAPLYAGATVEFM--PKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAK 303 (435)
Q Consensus 226 ~~~~~~~~l~~G~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~ 303 (435)
++..++.++..|+++++. +.+++..+++. +.++++|++.++|++++.|++.. ....+++
T Consensus 281 ~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~----------i~~~~vt~~~~~P~~~~~l~~~~---------~~~~~l~ 341 (580)
T 3etc_A 281 VWGKLYGQWIAGCAVFVYDYDRFEAKNMLEK----------ASKYGVTTFCAPPTIYRFLIKED---------LSHYNFS 341 (580)
T ss_dssp HHHTTHHHHHTTCEEEEEECSSCCHHHHHHH----------HHHHTCCEEEECHHHHHHHHTSC---------C---CCT
T ss_pred HHHHHHHHHhCCcEEEEecCCCCCHHHHHHH----------HHHHCCeEEEccHHHHHHHHhcc---------cccCCCc
Confidence 876788999999999988 57888888888 56689999999999999998741 2234678
Q ss_pred ccEEEEecCCCCCHHHHHHHHHHhCCcccccccCccccchhccCCCCCCCCCccceecCCCeEEEecCCCCCCCCc-cce
Q 013869 304 QLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGE 382 (435)
Q Consensus 304 ~lr~i~~~G~~l~~~l~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~-~Ge 382 (435)
+||.+++||+++++++.++|.+.+++++++.||+||+++.++.......+.+++|+|+++++++|+|++++.++.+ .||
T Consensus 342 ~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~~v~ivd~~g~~~~~g~~GE 421 (580)
T 3etc_A 342 TLKYAVVAGEPLNPEVFNRFLEFTGIKLMEGFGQTETVVTIATFPWMEPKPGSIGKPTPGYKIELMDRDGRLCEVGEEGE 421 (580)
T ss_dssp TCCEEEECSSCCCHHHHHHHHHHHSCCCEEEECCTTSSCCEECCTTSCCCTTCCBEECTTCEEEEECTTSCBCCTTCCEE
T ss_pred cceEEEEccCCCCHHHHHHHHHHhCCeEecccccccccceeecCCCCCCCCCccccCCCCCEEEEECCCCCCCCCCCceE
Confidence 9999999999999999999999999999999999999877766555566788999999999999999999988777 799
Q ss_pred EEEec-----CCccccccCCchhcccccccCCccccCceEEEcCCccEEEecccccCC
Q 013869 383 ICVKS-----PSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRKGIYF 435 (435)
Q Consensus 383 l~v~~-----~~~~~gy~~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~gR~~d~i 435 (435)
|+++| +.++.||+++|+.+.+.|. +|||+|||+|++|+||+|+|.||+||+|
T Consensus 422 l~v~~~~g~~~~~~~gY~~~p~~t~~~f~-~gwy~TGDlg~~d~dG~l~~~GR~dd~I 478 (580)
T 3etc_A 422 IVINTMEGKPVGLFVHYGKDPERTEETWH-DGYYHTGDMAWMDEDGYLWFVGRADDII 478 (580)
T ss_dssp EEEECTTCCCTTCCCEETTCHHHHHHHEE-TTEEEEEEEEEECTTSCEEEEEESSSCE
T ss_pred EEEecCCCCCCeeeccccCCHhHHHhhcC-CCEEecCcEEEECCCCcEEEEecCCCEE
Confidence 99997 7899999999999999995 8999999999999999999999999986
No 11
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=100.00 E-value=1.4e-63 Score=493.75 Aligned_cols=393 Identities=22% Similarity=0.290 Sum_probs=325.0
Q ss_pred ChHHHHHHHhcccCCCeeEEEeC--CcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCC
Q 013869 1 MEVFKAAYKKGSMARDSVAIRAD--QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPS 78 (435)
Q Consensus 1 ~~i~~~~~~~~~~~p~~~al~~~--~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~ 78 (435)
||+.+.|.++++++||++|+++. ++++||+||.++++++|++|++. |+++||+|+++++|+
T Consensus 2 ~tl~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~~A~~L~~~-----------------Gv~~gd~V~i~~~~~ 64 (504)
T 1t5h_X 2 QTVNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHAD-----------------GLRPQQRVAVVAPNS 64 (504)
T ss_dssp CCHHHHHHHHHHHCTTSEEEEETTTTEEEEHHHHHHHHHHHHHHHHHT-----------------TCCTTCEEEEECCSC
T ss_pred CcHHHHHHHHHHhCCCceEEEEcCCCceeEHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEEcCCC
Confidence 57999999999999999999987 88999999999999999999994 999999999999999
Q ss_pred HHHHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEe--chhhHHHHHHHHhccCCccccCCCCCCCCCccccc
Q 013869 79 FEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLS--TEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVF 156 (435)
Q Consensus 79 ~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (435)
+++++++|||+++|++++|+++.++.+++.++++.++++++++ +.+..+.+..... ...+..+ ..........
T Consensus 65 ~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~---~~~~~~~~~~ 139 (504)
T 1t5h_X 65 ADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGS--GARIIFL---GDLVRDGEPY 139 (504)
T ss_dssp HHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHHHHHCC--CCEEEEG---GGTEETTEEC
T ss_pred HHHHHHHHHHHHhCcEEEecCCccChHHHHHHHhhcCCcEEEEecchhhhhhhhhccc--cceeEEe---cchhhcCccc
Confidence 9999999999999999999999999999999999999999999 7776554411111 1111100 0000000000
Q ss_pred cchhhhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhccC--CCCCeeEEeecchhhhHHHHHHHHHH
Q 013869 157 DQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEY--TSADQFLHCLPLHHVHGLFNALLAPL 234 (435)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~--~~~~~~l~~~pl~~~~g~~~~~~~~l 234 (435)
............++++++++|||||||.||+|.++|+++.+.+......+++ .+.+++++.+|++|..++...++.++
T Consensus 140 ~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l 219 (504)
T 1t5h_X 140 SYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAAL 219 (504)
T ss_dssp CCSCCCCCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTTCCCSSTTCEEEECSCTTSHHHHTTTHHHHH
T ss_pred ccCCccCCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhhCCCCCCCceEEeecchhhcchHHHHHHHHH
Confidence 0000011134567899999999999999999999999999998888888888 88899999999999999865689999
Q ss_pred HcCCEEEEcCCcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccccEEEEecCCC
Q 013869 235 YAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSA 314 (435)
Q Consensus 235 ~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~i~~~G~~ 314 (435)
..|+++++.+.+++..+++. ++++++|++.++|+++..|++..... .....++++|.+++||++
T Consensus 220 ~~G~~~v~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~~~------~~~~~l~~lr~~~~gG~~ 283 (504)
T 1t5h_X 220 ALDGTYVVVEEFRPVDALQL----------VQQEQVTSLFATPTHLDALAAAAAHA------GSSLKLDSLRHVTFAGAT 283 (504)
T ss_dssp HTTCEEEECSSCCHHHHHHH----------HHHHTCCEEECCHHHHHHHHHHHCCT------TCCCCCTTCCEEEECCTT
T ss_pred HcCceEEeCCCCCHHHHHHH----------HHHhCCeEEEeChHHHHHHHhhhccc------cccccCccccEEEEcCCc
Confidence 99999999999999998888 56689999999999999998753210 122357899999999999
Q ss_pred CCHHHHHHHHHHhCCcccccccCccccchhccCCCCCCCCCccceecCCCeEEEecCCC---CCCCCc-cceEEEe-cCC
Q 013869 315 LPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDES---GSDAAG-VGEICVK-SPS 389 (435)
Q Consensus 315 l~~~l~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~---~~~~~~-~Gel~v~-~~~ 389 (435)
+++++.+.|.+.++.++++.||+||++...... ....+++|+|.++++++++|+++ +.++.+ .|||+++ |+.
T Consensus 284 l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~---~~~~~~~g~p~~~~~~~i~~~~~~~~~~~~~g~~GEl~v~gg~~ 360 (504)
T 1t5h_X 284 MPDAVLETVHQHLPGEKVNIYGTTEAMNSLYMR---QPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDS 360 (504)
T ss_dssp CCHHHHHHHHHHCCSEEEEEEEETTTEEEEEEE---SCSSSSEEBCCTTCCEEEECTTSCTTCBCCTTCCEEEEEECCTT
T ss_pred CCHHHHHHHHHhcCcceeeeecccccccccccc---CCCCCccccCCCCCceeEEeccCCCCCcCCCCCcceEEEeCCce
Confidence 999999999999999999999999994333222 24567899999999999999887 666666 7999999 999
Q ss_pred ccccccCCchhcccccccCCccccCceEEEcCCccEEEecccccCC
Q 013869 390 LFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRKGIYF 435 (435)
Q Consensus 390 ~~~gy~~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~gR~~d~i 435 (435)
++.||+++|+.+.+.| .+|||+|||+|++|+||++++.||+||+|
T Consensus 361 ~~~GY~~~~~~t~~~f-~~g~~~TGDlg~~~~dG~l~~~GR~dd~i 405 (504)
T 1t5h_X 361 AFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVDDMI 405 (504)
T ss_dssp SCCCBTTCHHHHHHHE-ETTEEEEEEEEEECTTSCEEEEEEGGGCE
T ss_pred eeceecCCchhhhhhh-cCCccccCcEEEECCCceEEEeCcccCEE
Confidence 9999999999999999 58999999999999999999999999986
No 12
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=100.00 E-value=5.2e-63 Score=490.54 Aligned_cols=392 Identities=21% Similarity=0.326 Sum_probs=324.4
Q ss_pred ChHHHHHHHhcccCCCeeEEEeCCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCCHH
Q 013869 1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE 80 (435)
Q Consensus 1 ~~i~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~~~ 80 (435)
+|+.++|.++++++||++|+++.++++||+||.++++++|++|++. |+++||+|+++++|+++
T Consensus 6 ~tl~~~l~~~a~~~pd~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~~-----------------Gv~~gd~V~i~~~~~~~ 68 (509)
T 3ivr_A 6 FTLADVYRRNAALFPDRTAFMVDGVRLTHRDYLARAERLASGLLRD-----------------GVHTGDRVAILSQNCSE 68 (509)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHT-----------------TCCTTCEEEEECCSCHH
T ss_pred CCHHHHHHHHHHHCCCceEEEECCcEEcHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEEcCCCHH
Confidence 5899999999999999999999999999999999999999999994 99999999999999999
Q ss_pred HHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHHhccCCccccCCCCCCCCCccccc--cc
Q 013869 81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVF--DQ 158 (435)
Q Consensus 81 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 158 (435)
+++++|||+++|++++|+++.++.+++.++++.+++++++++.+..+.+.............+............. ..
T Consensus 69 ~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (509)
T 3ivr_A 69 MIELIGAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLGGVKKAYAIGDGSGPFAPFKDLAS 148 (509)
T ss_dssp HHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHHGGGCSSCCEEEESSCCCSSCEEGGGTCC
T ss_pred HHHHHHHHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEECcchhhhHHhhhcccCCceEEEEcCCCCcChhhHhhccC
Confidence 9999999999999999999999999999999999999999999888775444333222111111111100101110 11
Q ss_pred hhhhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhccCCCCCeeEEeecchhhhHHHHHHHHHHHcCC
Q 013869 159 SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGA 238 (435)
Q Consensus 159 ~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~ 238 (435)
..........++++++++|||||||.||+|.++|+++.+.+......+++.++|++++.+|++|..++.. .+.++..|+
T Consensus 149 ~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~-~~~~~~~~g 227 (509)
T 3ivr_A 149 DTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLGL-MLTLQQAGG 227 (509)
T ss_dssp CSCCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHH-HHHHHHHTC
T ss_pred CCCCCcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEeCCCcchhHHHH-HHHHHHhCC
Confidence 1112234567899999999999999999999999999999999999999999999999999999999875 555556666
Q ss_pred EEEEcCCcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccccEEEEecCCCCCHH
Q 013869 239 TVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLP 318 (435)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~i~~~G~~l~~~ 318 (435)
+.++...+++..+++. +.++++|++.++|+++..+++.. ....++++|.++.+|++ +
T Consensus 228 ~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~p~~~~~l~~~~----------~~~~l~~lr~~~~~g~~---~ 284 (509)
T 3ivr_A 228 ASVIAAKFDPAQAARD----------IEAHKVTVMAEFAPMLGNILDQA----------APAQLASLRAVTGLDTP---E 284 (509)
T ss_dssp EEEECSSCCHHHHHHH----------HHHHTCCEEEEETTHHHHHHHHC----------CGGGGTTCCEEEEECCH---H
T ss_pred cEEEecccCHHHHHHH----------HHHHCCcEEEecHHHHHHHHhcc----------cccchhhhheecccCCh---H
Confidence 6666668899998888 56689999999999999998753 33467899999999987 8
Q ss_pred HHHHHHHHh-CCcccccccCccccchhccCCCCCCCCCccceecCCCeEEEecCCCCCCCCc-cceEEEecCCccccccC
Q 013869 319 VMQQWETIT-GHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSLFKEYWK 396 (435)
Q Consensus 319 l~~~~~~~~-~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~-~Gel~v~~~~~~~gy~~ 396 (435)
+.+.|.+.+ ++++++.||+||++++++..... ....++|+|+++++++|+|++++.++.+ .|||+++|++++.||++
T Consensus 285 ~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~-~~~~~~G~p~~~~~~~i~d~~~~~~~~g~~GEl~v~g~~~~~gY~~ 363 (509)
T 3ivr_A 285 TIERFEATCPNATFWATFGQSETSGLSTFAPYR-DRPKSAGRPLFWRTVAVVDAEDRPLPPGEVGEIVLRGPTVFKGYWN 363 (509)
T ss_dssp HHHHHHHHCTTCEEEEEEEEGGGTEEEEEEEGG-GSTTSCCEECTTCEEEEECTTSCBCCTTCCEEEEEESTTSCCEETT
T ss_pred HHHHHHHhcCCCeEEcccCccccccccccCccc-cCCCcccccCCCcEEEEECCCCCCCCCCCceEEEEecCCccccccC
Confidence 889999998 89999999999998765533221 2334599999999999999999888777 79999999999999999
Q ss_pred CchhcccccccCCccccCceEEEcCCccEEEeccc--ccCC
Q 013869 397 LPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRK--GIYF 435 (435)
Q Consensus 397 ~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~gR~--~d~i 435 (435)
+|+.+.+.|. +|||+|||+|++|+||++++.||. +|+|
T Consensus 364 ~~~~t~~~f~-~g~~~TGDl~~~~~dG~l~~~GR~d~~d~i 403 (509)
T 3ivr_A 364 NAAATQHAFR-NGWHHTGDMGRFDADGYLFYAGRAPEKELI 403 (509)
T ss_dssp CHHHHHHHTG-GGSEEEEEEEEECTTSCEEEEEEC------
T ss_pred CHHHhHHHhh-cCCcccccEEEECCCceEEEeCCCCcceeE
Confidence 9999999996 899999999999999999999999 8765
No 13
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=100.00 E-value=4.4e-64 Score=498.56 Aligned_cols=389 Identities=20% Similarity=0.288 Sum_probs=324.9
Q ss_pred ChHHHHHHHhcccCCCeeEEEeCCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCCHH
Q 013869 1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE 80 (435)
Q Consensus 1 ~~i~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~~~ 80 (435)
||+.+.|.++++++||++|+++.++++||+||.++++++|++|.+ .|+++||+|+++++|+++
T Consensus 1 m~l~~~l~~~a~~~p~~~A~~~~~~~~Ty~el~~~~~~lA~~L~~-----------------~g~~~gd~V~i~~~n~~e 63 (512)
T 3fce_A 1 MKLLEQIEKWAAETPDQTAFVWRDAKITYKQLKEDSDALAHWISS-----------------EYPDDRSPIMVYGHMQPE 63 (512)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHHH-----------------HSTTCCCCEEEEESSCHH
T ss_pred CcHHHHHHHHHHHCCCceEEEeCCceEEHHHHHHHHHHHHHHHHH-----------------hCCCCCCEEEEEeCCCHH
Confidence 899999999999999999999999999999999999999999999 499999999999999999
Q ss_pred HHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHHhccCCccccCCCCCCCCCccccccchh
Q 013869 81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQ 160 (435)
Q Consensus 81 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (435)
+++++|||+++|++++|+++.++.+++.++++.+++++++++..... .......... ..............
T Consensus 64 ~~~~~la~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~------~~~~~~~~~~---~~~~~~~~~~~~~~ 134 (512)
T 3fce_A 64 MIINFLGCVKAGHAYIPVDLSIPADRVQRIAENSGAKLLLSATAVTV------TDLPVRIVSE---DNLKDIFFTHKGNT 134 (512)
T ss_dssp HHHHHHHHHHTTCCEEEEETTSCHHHHHHHHHHSCCCEEEESSCCCS------SCCSSEEEET---HHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHhCCEEEeeCCCCcHHHHHHHHHhcCCCEEEecCcccc------cccccceech---hhhhhhcccccccC
Confidence 99999999999999999999999999999999999999999753210 0000000000 00000000000001
Q ss_pred hhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhccCCCCCeeEEeecchhhhHHHHHHHHHHHcCCEE
Q 013869 161 AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATV 240 (435)
Q Consensus 161 ~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~ 240 (435)
..+.....++++++++|||||||.||+|.++|+++.+.+......+++.+++++++.+|++|..+++ .++.++..|+++
T Consensus 135 ~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~-~~~~~l~~G~~~ 213 (512)
T 3fce_A 135 PNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVM-DIYPSLVTGGTL 213 (512)
T ss_dssp CCGGGSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHTTCCSSCEEEECSCTTSGGGHH-HHHHHHHTTCEE
T ss_pred CCccccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHhHHHH-HHHHHHhCCCEE
Confidence 1122356789999999999999999999999999999999999999999999999999999999986 599999999999
Q ss_pred EEcCC---cchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccccEEEEecCCCCCH
Q 013869 241 EFMPK---FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPL 317 (435)
Q Consensus 241 ~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~i~~~G~~l~~ 317 (435)
++.+. +++..+++. +.++++|++.++|+++..+++... .....++++|.+++||+++++
T Consensus 214 ~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~--------~~~~~~~~lr~~~~~G~~l~~ 275 (512)
T 3fce_A 214 WAIDKDMIARPKDLFAS----------LEQSDIQVWTSTPSFAEMCLMEAS--------FSESMLPNMKTFLFCGEVLPN 275 (512)
T ss_dssp EECCHHHHHSHHHHHHH----------HHHHCCCEEEECHHHHHHHTTSTT--------CSTTTSTTCCEEEECSSCCCH
T ss_pred EECCHHHhhCHHHHHHH----------HHHcCCcEEEecHHHHHHHHhhcc--------ccchhCccccEEEEecCcCCH
Confidence 99987 677777777 566899999999999999987532 233468899999999999999
Q ss_pred HHHHHHHHHh-CCcccccccCccccchhccCCC-----CCCCCCccceecCCCeEEEecCCCCCCCCc-cceEEEecCCc
Q 013869 318 PVMQQWETIT-GHRLLERYGMTEFVMAISNPLR-----GARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSL 390 (435)
Q Consensus 318 ~l~~~~~~~~-~~~l~~~YG~tE~~~~~~~~~~-----~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~-~Gel~v~~~~~ 390 (435)
++.+.|.+.| ++++++.||+||+++.++.... ......++|+|.++++++|+|+++..++.+ .|||+++|+++
T Consensus 276 ~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~g~~~~~g~~GEl~v~g~~v 355 (512)
T 3fce_A 276 EVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLDQYKSLPVGYCKSDCRLLIMKEDGTIAPDGEKGEIVIVGPSV 355 (512)
T ss_dssp HHHHHHHHHCTTCEEEEEECCGGGSSCSEEEECCHHHHHHCSSCCCEEECTTCEEEEECSSSCBCCTTSCEEEEEESTTS
T ss_pred HHHHHHHHHCCCCEEEeCcccChhhhheeeEEeccccccccCCCccccccCCcEEEEECCCCCCCCCCCeEEEEEecccc
Confidence 9999999999 8899999999999876552211 123567899999999999999999988777 79999999999
Q ss_pred cccccCCchhccccc---ccCCccccCceEEEcCCccEEEecccccCC
Q 013869 391 FKEYWKLPKVTKDSF---TADGFFKTGDTGKQDEDGYYIILGRKGIYF 435 (435)
Q Consensus 391 ~~gy~~~~~~~~~~~---~~~g~~~TGD~g~~~~dG~l~~~gR~~d~i 435 (435)
+.||+++|+.+++.| +++|||+|||+|++ +||++++.||+||+|
T Consensus 356 ~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~-~dG~l~i~GR~~d~i 402 (512)
T 3fce_A 356 SVGYLGSPELTEKAFTMIDGERAYKTGDAGYV-ENGLLFYNGRLDFQI 402 (512)
T ss_dssp CSCBTTCHHHHHHHEEEETTEEEEEEEEEEEE-ETTEEEEEEEGGGCE
T ss_pred ChhhcCCchhhhhccccCCCCEEEeCCceEEe-cCCEEEEecccCCEE
Confidence 999999999999988 45679999999999 799999999999986
No 14
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=100.00 E-value=1.4e-63 Score=500.80 Aligned_cols=381 Identities=22% Similarity=0.315 Sum_probs=315.9
Q ss_pred hHHHHHHHhcccCCCeeEEEeCCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCCHHH
Q 013869 2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF 81 (435)
Q Consensus 2 ~i~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~~~~ 81 (435)
+|+++|.++++++||++|+++.++++||+||.++++++|++|++. |+++||+|+|+++|++++
T Consensus 76 ~l~~~l~~~a~~~pd~~A~~~~~~~~Ty~el~~~~~~lA~~L~~~-----------------Gv~~gd~V~i~~~n~~~~ 138 (570)
T 4gr5_A 76 CVHELFEAQAARAPDAVALLHEADELTYGALNERANRLAHRLVGL-----------------GVAPGTLVGVHLERGFDM 138 (570)
T ss_dssp CHHHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHT-----------------TCCTTCEEEEECCSSHHH
T ss_pred CHHHHHHHHHHHCCCCeEEECCCCcEeHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEEeCCCHHH
Confidence 688999999999999999999999999999999999999999994 999999999999999999
Q ss_pred HHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHHhccCCccccCCCCCCCCCccccccchhh
Q 013869 82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQA 161 (435)
Q Consensus 82 ~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (435)
++++|||+++|++++|+++.++.+++.++++.+++++++++.+....+.. .....+ ... ........
T Consensus 139 ~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~------~~~~~~--~~~-----~~~~~~~~ 205 (570)
T 4gr5_A 139 VVALLAVLKAGGGYTMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRLTG------TTTLYV--EDE-----AASDAPAG 205 (570)
T ss_dssp HHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTSSCS------SEEEEC--CC------------CC
T ss_pred HHHHHHHHHHCCEEEEcCCCChHHHHHHHHHhcCCCEEEecchhhhcccC------Ccceee--ecc-----cccccccc
Confidence 99999999999999999999999999999999999999999865322110 000000 000 00001111
Q ss_pred hhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhccCCCCCeeEEeecchhhhHHHHHHHHHHHcCCEEE
Q 013869 162 EKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVE 241 (435)
Q Consensus 162 ~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~~ 241 (435)
.......++++++|+|||||||.||+|.++|+++.+.... ....++.++++++..+|++|..+.+ .++.++..|++++
T Consensus 206 ~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~-~~~~~l~~G~~~v 283 (570)
T 4gr5_A 206 NLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLG-QDYAGFGPDEVFLQCSPVSWDAFGL-ELFGALLFGARCV 283 (570)
T ss_dssp CCCCCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSS-CCSSCCSTTCEEEECSCTTSSTHHH-HHHHHHTTTCEEE
T ss_pred ccCCCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHh-hhhcCCCCCCEEEEecCccHHHHHH-HHHHHHhcCCEEE
Confidence 1223567899999999999999999999999998766544 3445788899999999999877665 6889999999999
Q ss_pred EcCC--cchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccccEEEEecCCCCCHHH
Q 013869 242 FMPK--FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPV 319 (435)
Q Consensus 242 ~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~i~~~G~~l~~~l 319 (435)
+.+. +++..+++. ++++++|++.++|+++..|++.. ...++++|.+++||++++.++
T Consensus 284 ~~~~~~~~~~~~~~~----------i~~~~vt~~~~~P~~~~~l~~~~-----------~~~~~~lr~~~~gG~~l~~~~ 342 (570)
T 4gr5_A 284 LQSGQNPDPLEIGEL----------VARHGVTMLQLSASLFNFLVDEV-----------PEAFEGVRYAITGGEPASVPH 342 (570)
T ss_dssp ECSSSSCCHHHHHHH----------HHHHTCCEEEEEHHHHHHHHHHC-----------GGGGTTCSEEEEESSCCCHHH
T ss_pred EcCCccCCHHHHHHH----------HHHcCCcEEEecHHHHHHHHhhc-----------hhhCCCceEEEEecccCCHHH
Confidence 9874 577788787 66699999999999999998642 235789999999999999999
Q ss_pred HHHHHHHh-CCcccccccCccccchhccCC----CCCCCCCccceecCCCeEEEecCCCCCCCCc-cceEEEecCCcccc
Q 013869 320 MQQWETIT-GHRLLERYGMTEFVMAISNPL----RGARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSLFKE 393 (435)
Q Consensus 320 ~~~~~~~~-~~~l~~~YG~tE~~~~~~~~~----~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~-~Gel~v~~~~~~~g 393 (435)
.+++.+.+ ++++++.||+||++++++... .......++|+|+++++++|+|++++.++.+ .|||+++|++++.|
T Consensus 343 ~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d~~~~~~~~G~~GEl~v~g~~v~~G 422 (570)
T 4gr5_A 343 VAKARRDHPALRLGNGYGPAESMGFTTHHAVVAGDLSGTALPIGVPLAGKRAYVLDDDLKPAANGALGELYVAGAGLAHG 422 (570)
T ss_dssp HHHHHHHCTTCEEEEEECCGGGCSCSEEEECCGGGTTSSSCCCBEECTTEEEEEECTTSCBCCTTCEEEEEEEETTCCCE
T ss_pred HHHHHHhCCCcEEEEeechhhheeeeeeeeecccccCCCccccceeeCCCEEEEECCCCCCCCCCCcEEEEEeecccchh
Confidence 99999987 789999999999987655221 1223456799999999999999999888777 79999999999999
Q ss_pred ccCCchhcccccccC--------CccccCceEEEcCCccEEEecccccCC
Q 013869 394 YWKLPKVTKDSFTAD--------GFFKTGDTGKQDEDGYYIILGRKGIYF 435 (435)
Q Consensus 394 y~~~~~~~~~~~~~~--------g~~~TGD~g~~~~dG~l~~~gR~~d~i 435 (435)
|+++++.+.+.|+.+ |||+|||+|++|+||+|+|.||+||+|
T Consensus 423 Y~~~~~~t~~~f~~~~~~~~~~~~w~~TGDlg~~d~dG~l~~~GR~~d~I 472 (570)
T 4gr5_A 423 YVSRPALTAERFVADPFAGPGGERMYRTGDLARRRADGVLEYVGRADDQV 472 (570)
T ss_dssp ETTCHHHHHHHEEECTTCCSSCCEEEEEEEEEEECTTSCEEEEEC-----
T ss_pred cCCCchhhhcccccCCCCCCCCCEEEeCCCeEEECCCCeEEEEcccCCEE
Confidence 999999999998543 799999999999999999999999987
No 15
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=100.00 E-value=8.3e-63 Score=491.39 Aligned_cols=396 Identities=23% Similarity=0.354 Sum_probs=322.5
Q ss_pred HHHHHHHhcccCCCeeEEEeCCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCCHHHH
Q 013869 3 VFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFV 82 (435)
Q Consensus 3 i~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~~~~~ 82 (435)
+.+.|.++++ +|+++|+++.++++||+||.++++++|++|++. |+++||+|+++++|+++++
T Consensus 26 ~~~~l~~~~~-~p~~~A~~~~~~~~Ty~el~~~~~~lA~~L~~~-----------------Gv~~gd~V~i~~~n~~~~~ 87 (529)
T 2v7b_A 26 AAYLFRLNET-RAGKTAYIDDTGSTTYGELEERARRFASALRTL-----------------GVHPEERILLVMLDTVALP 87 (529)
T ss_dssp HHHHHHHTGG-GTTSEEEECSSCEEEHHHHHHHHHHHHHHHHHT-----------------TCCTTCEEEEECCSSTHHH
T ss_pred HHHHHHhhhc-cCCceEEEeCCCCccHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEEcCCcHHHH
Confidence 6788888899 999999999899999999999999999999994 9999999999999999999
Q ss_pred HHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHHhccC---CccccCCCCCCCC----Ccccc
Q 013869 83 AGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSG---AKFSLIPPVPNVS----SETTV 155 (435)
Q Consensus 83 ~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~----~~~~~ 155 (435)
+++|||+++|++++|+++.++.+++.++++.++++++|++++..+.+........ ..+.......... .....
T Consensus 88 ~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (529)
T 2v7b_A 88 VAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESAEHDGCQLIVSQPRESEPRLAPLFEEL 167 (529)
T ss_dssp HHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHHCC---CCEEEEECC------CCCBHHHH
T ss_pred HHHHHHHHcCceEEecCcccCHHHHHHHHhccCCeEEEechhhhhHHHHHHhhccccCceEEEecccccccccccchhhh
Confidence 9999999999999999999999999999999999999999988776655433211 1111111110000 00000
Q ss_pred cc-chhhhhccCCCCCCcEEEEecCCCCCCCceEEeehHHH-HHHHHHHHHhccCCCCCeeEEeecchhhhHHHHHHHHH
Q 013869 156 FD-QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSI-DAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAP 233 (435)
Q Consensus 156 ~~-~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l-~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~ 233 (435)
.. ...........++++++++|||||||.||+|.++|+++ ..........+++.+.+++++.+|++|..++...++.+
T Consensus 168 ~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~ 247 (529)
T 2v7b_A 168 IDAAAPAAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFSAAKLFFAYGLGNGLTFP 247 (529)
T ss_dssp HHTSCCCSSCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCCCCCTTCEEEESSCTTSHHHHHHHTHHH
T ss_pred hccCCCcccccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhccCCCCCcEEEEeecHHHHHHHHHHHHHH
Confidence 00 00011123456799999999999999999999999998 55554444456788999999999999999987667889
Q ss_pred HHcCCEEEEc-CCcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccccEEEEecC
Q 013869 234 LYAGATVEFM-PKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGS 312 (435)
Q Consensus 234 l~~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~i~~~G 312 (435)
+..|+++++. +.+++..+++. +.++++|++.++|+++..+++..+.. .....++|.+++||
T Consensus 248 l~~G~~~v~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~~~--------~~~~~~lr~~~~gG 309 (529)
T 2v7b_A 248 LSVGATAILMAERPTADAIFAR----------LVEHRPTVFYGVPTLYANMLVSPNLP--------ARADVAIRICTSAG 309 (529)
T ss_dssp HHHTCEEECCCSCCCHHHHHHH----------HHHSCCSEEEECHHHHHHHHTCTTCC--------CGGGCCCCEEEECS
T ss_pred HhcCcEEEEecCCCCHHHHHHH----------HHHhCCEEEEecHHHHHHHHhCcccc--------cccCCceEEEEEcC
Confidence 9999999988 66788888888 56689999999999999998753211 11124799999999
Q ss_pred CCCCHHHHHHHHHHhCCcccccccCccccchhccCCCCCCCCCccceecCCCeEEEecCCCCCCCCc-cceEEEecCCcc
Q 013869 313 SALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSLF 391 (435)
Q Consensus 313 ~~l~~~l~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~-~Gel~v~~~~~~ 391 (435)
+++++++.+.|.+.+++++++.||+||++.+++.........+++|+|+++++++|+|++++.++.+ .|||+++|++++
T Consensus 310 e~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~g~~~~~g~~GEl~v~g~~~~ 389 (529)
T 2v7b_A 310 EALPREIGERFTAHFGCEILDGIGSTEMLHIFLSNRAGAVEYGTTGRPVPGYEIELRDEAGHAVPDGEVGDLYIKGPSAA 389 (529)
T ss_dssp SCCCHHHHHHHHHHHSCCEEEEEECTTTSSEEEECCTTCCCTTSCCEECTTCEEEEECTTSCBCCTTSCEEEEEECTTCC
T ss_pred CCCCHHHHHHHHHHhCCceeeeEchhhcCceeeccccCCCccCCcccCCCCCEEEEECCCCCCCCCCCccEEEEecCCcc
Confidence 9999999999999999999999999999655443333335678999999999999999999888777 799999999999
Q ss_pred ccccCCchhcccccccCCccccCceEEEcCCccEEEecccccCC
Q 013869 392 KEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRKGIYF 435 (435)
Q Consensus 392 ~gy~~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~gR~~d~i 435 (435)
.||+++++.+...|. +|||+|||+|++++||++++.||.||+|
T Consensus 390 ~gY~~~~~~t~~~f~-~~~~~TGDl~~~~~~G~l~~~GR~dd~i 432 (529)
T 2v7b_A 390 VMYWNNREKSRATFL-GEWIRSGDKYCRLPNGCYVYAGRSDDML 432 (529)
T ss_dssp CCBTTCHHHHHHHEE-TTEEEEEEEEEECTTSCEEEEEEGGGCB
T ss_pred cccCCChHHHHHhhh-cCCcccCceEEECCCccEEEeCccCCeE
Confidence 999999999999995 7999999999999999999999999986
No 16
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=100.00 E-value=5.5e-63 Score=499.05 Aligned_cols=379 Identities=19% Similarity=0.222 Sum_probs=319.4
Q ss_pred hHHHHHHHhcccCCCeeEEEeCCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCCHHH
Q 013869 2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF 81 (435)
Q Consensus 2 ~i~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~~~~ 81 (435)
|++++|.++++++||++|+++.++++||+||.++++++|++|++ .|+++||+|+++++|++++
T Consensus 28 tl~~~~~~~a~~~Pd~~Av~~~~~~lTY~eL~~~a~~lA~~L~~-----------------~Gv~~g~~V~i~~~~s~~~ 90 (620)
T 4dg8_A 28 TVVARFSEMAALHPHREAIRDRFGSVDYRQLLDSAEQLSDYLLE-----------------HYPQPGVCLGVYGEYSRES 90 (620)
T ss_dssp CHHHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHH-----------------HCCSSCCEEEEESSSCHHH
T ss_pred CHHHHHHHHHHhCCCCeEEEcCCCcCcHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEeCCCHHH
Confidence 68999999999999999999999999999999999999999999 4999999999999999999
Q ss_pred HHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHHhccCCccccCCCCCCCCCccccccchhh
Q 013869 82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQA 161 (435)
Q Consensus 82 ~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (435)
++++|||+++|++++|+++.++.+++.++++.+++++++++........ ......+ .........
T Consensus 91 vva~lailkaGa~~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~~------~~~~~~~---------~~~~~~~~~ 155 (620)
T 4dg8_A 91 ITCLLAILLSGHHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPAN------GLPCVPV---------RHLPAAPAS 155 (620)
T ss_dssp HHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCCT------TSCEEEG---------GGCCCCCCC
T ss_pred HHHHHHHHHhCCEEEeeCccChHHHHHHHHHhCCCcEEEecCccccccc------CCceeee---------ccCCcCCcc
Confidence 9999999999999999999999999999999999999996653211000 0000000 000000011
Q ss_pred hhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhccCCCCCeeEEeecchhhhHHHHHHHHHHHcCCEEE
Q 013869 162 EKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVE 241 (435)
Q Consensus 162 ~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~~ 241 (435)
.......++++++++|||||||.||||.++|+++.+.... ...+++.+.++++...|++|..+++ .++.++..|++++
T Consensus 156 ~~~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~-~~~~~l~~G~~~v 233 (620)
T 4dg8_A 156 VARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFLAFAPQMRFLVNSPLSFDAATL-EIWGALLNGGCCV 233 (620)
T ss_dssp SSCCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGGTTCTTCEEEECSCTTSTHHHH-HHHHHHTTTCEEE
T ss_pred ccCCCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhhCCCCCCEEEEECccCHHHHHH-HHHHHHhcCCEEE
Confidence 1122456899999999999999999999999998776655 4556788999999999999999986 5999999999999
Q ss_pred EcC--CcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccccEEEEecCCCCCHHH
Q 013869 242 FMP--KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPV 319 (435)
Q Consensus 242 ~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~i~~~G~~l~~~l 319 (435)
+.+ .+++..+++. +.++++|++.++|+++..+++. ....++++|.+++||++++.++
T Consensus 234 ~~~~~~~~~~~~~~~----------i~~~~vt~~~~~Ps~~~~l~~~-----------~~~~l~~lr~v~~gGe~l~~~~ 292 (620)
T 4dg8_A 234 LNDLGPLDPGVLRQL----------IGERGADSAWLTASLFNTLVDL-----------DPDCLGGLRQLLTGGDILSVPH 292 (620)
T ss_dssp ECCSSSCCHHHHHHH----------HHTTCCCEEEEEHHHHHHHHHH-----------CGGGGTTCSEEEEESSCCCHHH
T ss_pred eCccccCCHHHHHHH----------HHHhCCcEEEccHHHHHHHHhc-----------ChhhCCCccEEEEEeCcCCHHH
Confidence 964 5778888887 6679999999999999999763 2346789999999999999999
Q ss_pred HHHHHHHh-CCcccccccCccccchhcc----CCCCCCCCCccceecCCCeEEEecCCCCC-CCCc-cceEEEecCCccc
Q 013869 320 MQQWETIT-GHRLLERYGMTEFVMAISN----PLRGARKAGTVGNPLPGVQVKIAEDESGS-DAAG-VGEICVKSPSLFK 392 (435)
Q Consensus 320 ~~~~~~~~-~~~l~~~YG~tE~~~~~~~----~~~~~~~~~~~G~p~~~~~~~i~d~~~~~-~~~~-~Gel~v~~~~~~~ 392 (435)
.+++.+.+ ++++++.||+||++++++. .........++|+|+++++++|+|+++.. ++.+ .|||+++|+++++
T Consensus 293 ~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~~~~g~~GEl~i~G~~v~~ 372 (620)
T 4dg8_A 293 VRRALLRHPRLHLVNGYGPTENTTFTCCHVVTDDDLEEDDIPIGKAIAGTAVLLLDEHGQEIAEPDRAGEIVAFGAGLAQ 372 (620)
T ss_dssp HHHHHHHCTTCEEEEEECCGGGCSCSEEEECCTGGGGSSSCCCBEECTTEEEEEECTTSCBCCSSSCCEEEEEEETTCCS
T ss_pred HHHHHHhCCCeEEEeeEchhhhhhheEEEeccccccCCCCCCceecccCcEEEEECccCCCCCCCCCceEEEEecccccc
Confidence 99988876 7899999999999876542 11223456789999999999999998887 5555 7999999999999
Q ss_pred cccCCchhcccccccC-------CccccCceEEEcCCccEEEecccccCC
Q 013869 393 EYWKLPKVTKDSFTAD-------GFFKTGDTGKQDEDGYYIILGRKGIYF 435 (435)
Q Consensus 393 gy~~~~~~~~~~~~~~-------g~~~TGD~g~~~~dG~l~~~gR~~d~i 435 (435)
||+++|+.|++.|..+ +||+|||+|++++||+|+|+||+||+|
T Consensus 373 GY~~~p~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~dG~l~~~GR~dd~I 422 (620)
T 4dg8_A 373 GYRNDAARTRASFVELPYRGRLLRAYRTGDRARYDEQGRLRFIGRGDGQV 422 (620)
T ss_dssp EETTCHHHHHHHEEEEEETTEEEEEEEEEEEEEECTTSCEEEEECSSSEE
T ss_pred ccCCChhhhhhhhccCCCCCCCceEEeCCCEEEECCCCeEEEEccCCCEE
Confidence 9999999999999653 799999999999999999999999986
No 17
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=100.00 E-value=1e-62 Score=498.72 Aligned_cols=400 Identities=19% Similarity=0.273 Sum_probs=332.5
Q ss_pred ChHHHHHHHhcccCCCeeEEEeCCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCCHH
Q 013869 1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE 80 (435)
Q Consensus 1 ~~i~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~~~ 80 (435)
++++++|.++++ ||++|+++.++++||+||.++++++|++|+++ |+++||+|+++++|+++
T Consensus 27 ~~l~~~~~~~a~--pd~~Av~~~~~~lTY~eL~~~a~~lA~~L~~~-----------------Gv~~gd~V~l~~~~s~~ 87 (617)
T 3rg2_A 27 LPLTDILTRHAA--SDSIAVIDGERQLSYRELNQAADNLACSLRRQ-----------------GIKPGETALVQLGNVAE 87 (617)
T ss_dssp CCTTHHHHTTTT--CCSEEEEETTEEEEHHHHHHHHHHHHHHHHHT-----------------TCCTTCEEEEECCSSHH
T ss_pred CCHHHHHHHhhC--CCCeEEecCCceEeHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEECCCcHH
Confidence 478899999998 99999999999999999999999999999995 99999999999999999
Q ss_pred HHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhH-----HHHHHHHhccCC-ccccCCCCCCCCCccc
Q 013869 81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYR-----EVLQNVASKSGA-KFSLIPPVPNVSSETT 154 (435)
Q Consensus 81 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 154 (435)
+++++|||+++|++++|+++.++.+++.++++.+++++++++.... ..+......... ....+...........
T Consensus 88 ~vva~lA~l~aG~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (617)
T 3rg2_A 88 LYITFFALLKLGVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDSGEHNLQD 167 (617)
T ss_dssp HHHHHHHHHHHTCEEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHSTTCCEEEEETCCSTTBHHH
T ss_pred HHHHHHHHHhcCeEEccCCccccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhhcCCccceeeecccccccchhh
Confidence 9999999999999999999999999999999999999999997653 222222221111 1111100000000000
Q ss_pred -cccchhhhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhccCCCCCeeEEeecchhhhHHHH-HHHH
Q 013869 155 -VFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFN-ALLA 232 (435)
Q Consensus 155 -~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~-~~~~ 232 (435)
..............++++++++|||||||.||||.++|+++.+.+......+++.+.+++++.+|++|.+++.. .++.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~ 247 (617)
T 3rg2_A 168 AINHPAEDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAHNYAMSSPGSLG 247 (617)
T ss_dssp HHHSCCSSCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHH
T ss_pred hhcccccccCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhcCCCCcceEEEeccchhhhhhhHHHHHH
Confidence 00001111223456789999999999999999999999999999999999999999999999999999988764 5889
Q ss_pred HHHcCCEEEEcCCcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccccEEEEecC
Q 013869 233 PLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGS 312 (435)
Q Consensus 233 ~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~i~~~G 312 (435)
++..|+++++.+.+++..++.. +.++++|++.++|+++..+++..... .....++++|.+++||
T Consensus 248 ~l~~G~~~v~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~~~------~~~~~l~~lr~i~~gG 311 (617)
T 3rg2_A 248 VFLAGGTVVLAADPSATLCFPL----------IEKHQVNVTALVPPAVSLWLQALIEG------ESRAQLASLKLLQVGG 311 (617)
T ss_dssp HHHHTCEEEECSSCCHHHHHHH----------HHHTTCCEEEECHHHHHHHHHHHHTT------CCTTTTTTCCEEEEES
T ss_pred HHHcCCEEEEeCCCCHHHHHHH----------HHHhCCcEEEcchHHHHHHHHhhhcc------cccccCCCccEEEEcC
Confidence 9999999999999888888887 56699999999999999998753221 1123678999999999
Q ss_pred CCCCHHHHHHHHHHhCCcccccccCccccchhccCCCC-CCCCCccceec-CCCeEEEecCCCCCCCCc-cceEEEecCC
Q 013869 313 SALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRG-ARKAGTVGNPL-PGVQVKIAEDESGSDAAG-VGEICVKSPS 389 (435)
Q Consensus 313 ~~l~~~l~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~-~~~~~~~G~p~-~~~~~~i~d~~~~~~~~~-~Gel~v~~~~ 389 (435)
+++++++.++|.+.+++++++.||+||++..++..... .....++|+|+ ++++++|+|++++.++.+ .|||+++|++
T Consensus 312 e~l~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d~~~~~~p~G~~GEl~i~G~~ 391 (617)
T 3rg2_A 312 ARLSATLAARIPAEIGCQLQQVFGMAEGLVNYTRLDDSAEKIIHTQGYPMCPDDEVWVADAEGNPLPQGEVGRLMTRGPY 391 (617)
T ss_dssp SCCCHHHHHHHHHHTCSEEEEEEEETTEEEEECCTTSCHHHHHHCCCEESCTTCEEEEECTTSCBCCTTCCEEEEEECSS
T ss_pred CcCCHHHHHHHHHHhCCcEEEEeccCcceeecccCCCcccccccCCCccCCCCceEEEECCCCCCCCCCCceEEEecCcc
Confidence 99999999999999999999999999998655532221 12235789997 788999999999998887 7999999999
Q ss_pred ccccccCCchhcccccccCCccccCceEEEcCCccEEEecccccCC
Q 013869 390 LFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRKGIYF 435 (435)
Q Consensus 390 ~~~gy~~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~gR~~d~i 435 (435)
+++||+++|+.|.+.|+.++||+|||+|++++||.++++||+||+|
T Consensus 392 v~~GY~~~p~~t~~~f~~~~~yrTGDl~~~~~dG~l~~~GR~dd~i 437 (617)
T 3rg2_A 392 TFRGYYKSPQHNASAFDANGFYCSGDLISIDPEGYITVQGREKDQI 437 (617)
T ss_dssp SCSCCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEECSSEE
T ss_pred ccchhcCChhhhhhccCCCCceecCceEEEcCCceEEEEeecCCEE
Confidence 9999999999999999999999999999999999999999999985
No 18
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=100.00 E-value=3.3e-63 Score=488.99 Aligned_cols=387 Identities=20% Similarity=0.311 Sum_probs=314.5
Q ss_pred ChHHHHHHHhcccCCCeeEEEeCC---------cccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeE
Q 013869 1 MEVFKAAYKKGSMARDSVAIRADQ---------KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARI 71 (435)
Q Consensus 1 ~~i~~~~~~~~~~~p~~~al~~~~---------~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V 71 (435)
+|+.+.|.++++++||++|+++.+ +++||+||.++++++|++|++. |+ +||+|
T Consensus 24 ~tl~~~l~~~a~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~-----------------g~-~gd~V 85 (480)
T 3t5a_A 24 RSLPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRC-----------------GS-TGDRV 85 (480)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTS-----------------SC-TTCEE
T ss_pred ccHHHHHHHHHHhCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhc-----------------CC-CCCEE
Confidence 578999999999999999999754 7999999999999999999994 85 99999
Q ss_pred EEEeCCCHHHHHHHHHHHHhCCeEEeCCC---CCCHHHHHHHHhcCCccEEEechhhHHHHHHHHhccCC----ccccCC
Q 013869 72 GIVAKPSFEFVAGVLGTWFSGCIAVPLAL---SYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGA----KFSLIP 144 (435)
Q Consensus 72 ~i~~~~~~~~~~~~lA~~~~G~~~v~l~~---~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~----~~~~~~ 144 (435)
+|+++|++++++++|||+++|++++|+++ .++.+++.++++.++++++|++.+..+.+......... .+..+.
T Consensus 86 ~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (480)
T 3t5a_A 86 VISAPQGLEYVVAFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSIIEVD 165 (480)
T ss_dssp EEECCSSHHHHHHHHHHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHTCC------CCEEEEGG
T ss_pred EEEcCCcHHHHHHHHHHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHHHhccccccccceeEec
Confidence 99999999999999999999999999999 77899999999999999999999887766554332211 111110
Q ss_pred CCCCCCCccccccchhhhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhccCCC------CCeeEEee
Q 013869 145 PVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTS------ADQFLHCL 218 (435)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~------~~~~l~~~ 218 (435)
. .. .............++++++|+|||||||.||||.++|+++.+++......+.+.. .+++++.+
T Consensus 166 ~---~~-----~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~d~~l~~~ 237 (480)
T 3t5a_A 166 L---LD-----LDAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWL 237 (480)
T ss_dssp G---SC-----TTCC---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHHCTTTTTCCCTTEEEEECC
T ss_pred c---cc-----cccccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHhccccccCCCCCCeEEEeC
Confidence 0 00 0011112234567789999999999999999999999999999998888888877 89999999
Q ss_pred cchhhhHHHHHHHHHHHcCCEEEEcCCc----chhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHH
Q 013869 219 PLHHVHGLFNALLAPLYAGATVEFMPKF----SVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTEL 294 (435)
Q Consensus 219 pl~~~~g~~~~~~~~l~~G~~~~~~~~~----~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~ 294 (435)
|++|..++...++.++..|+++++.++. ++..+++. ++++++| +..+|+++..++......
T Consensus 238 pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~----------i~~~~~t-~~~~p~~~~~l~~~~~~~---- 302 (480)
T 3t5a_A 238 PFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHL----------MASDFHA-FSAAPNFAFELAARRTTD---- 302 (480)
T ss_dssp CTTSTTHHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHH----------TTSSSEE-EEEECHHHHHHHHHHCCT----
T ss_pred CCcCccHHHHHHHHHHHcCCceEEECHHHHHHCHHHHHHH----------HHhhcee-EeeChHHHHHHHHhhcCc----
Confidence 9999999877789999999999999864 77777777 7889999 889999998887642211
Q ss_pred HHHhhhhccccEEEEecCCCCCHHHHHHHHHHhC------CcccccccCccccchhccCCCC------------------
Q 013869 295 QAASASAAKQLRLMMCGSSALPLPVMQQWETITG------HRLLERYGMTEFVMAISNPLRG------------------ 350 (435)
Q Consensus 295 ~~~~~~~l~~lr~i~~~G~~l~~~l~~~~~~~~~------~~l~~~YG~tE~~~~~~~~~~~------------------ 350 (435)
......++++||.+++||+++++++.++|.+.++ .++++.||+||++.+++.....
T Consensus 303 ~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 382 (480)
T 3t5a_A 303 DDMAGRDLGNILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHA 382 (480)
T ss_dssp GGGTTCCCTTCCEEEECCTTCCHHHHHHHHHHSGGGTCCGGGEEEEEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBC
T ss_pred ccccccchhhhheeeecCCcCCHHHHHHHHHHHhhcCCChhhccccccccccceeEeecccCCCcceEEecHHHhccCce
Confidence 1223457899999999999999999999999984 3799999999998766533221
Q ss_pred -------CCCCCccceecCCCeEEEecCC-CCCCCCc-cceEEEecCCccccccCCchhcccccc-----------cCCc
Q 013869 351 -------ARKAGTVGNPLPGVQVKIAEDE-SGSDAAG-VGEICVKSPSLFKEYWKLPKVTKDSFT-----------ADGF 410 (435)
Q Consensus 351 -------~~~~~~~G~p~~~~~~~i~d~~-~~~~~~~-~Gel~v~~~~~~~gy~~~~~~~~~~~~-----------~~g~ 410 (435)
.....++|+|++ ++++|+|++ ++.++.+ .|||+|+|++++.||+++|+.|++.|+ ++||
T Consensus 383 ~~~~~~~~~~~~~~G~p~~-~~~~ivd~~~g~~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w 461 (480)
T 3t5a_A 383 KPCAGGGATSLISYMLPRS-PIVRIVDSDTCIECPDGTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPW 461 (480)
T ss_dssp CCCCSSSCEEEECEECCSS-SEEEEEETTTTEECCTTBCEEEEEESTTSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCCB
T ss_pred eecCCCCcceeeecCcccC-CEEEEEcCCCCcCCCCCCEEEEEEeCCccccccccCcchhHHHHhhhhccccCCCCCCCe
Confidence 123458999999 999999977 5666666 799999999999999999999999995 5679
Q ss_pred cccCceEEEcCCccEEEecc
Q 013869 411 FKTGDTGKQDEDGYYIILGR 430 (435)
Q Consensus 411 ~~TGD~g~~~~dG~l~~~gR 430 (435)
|+|||+|+++ ||+|+|.||
T Consensus 462 ~~TGDlg~~d-dG~l~~~GR 480 (480)
T 3t5a_A 462 LRTGDSGFVT-DGKMFIIGR 480 (480)
T ss_dssp EEEEEEEEEE-TTEEEECC-
T ss_pred eeccceeeEE-CCEEEEeCC
Confidence 9999999996 999999999
No 19
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=100.00 E-value=4.7e-63 Score=489.52 Aligned_cols=382 Identities=37% Similarity=0.590 Sum_probs=319.8
Q ss_pred ChHHHHHHHhcccCCC-eeEEEeCCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCCH
Q 013869 1 MEVFKAAYKKGSMARD-SVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSF 79 (435)
Q Consensus 1 ~~i~~~~~~~~~~~p~-~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~~ 79 (435)
+|+++.|.++++++|+ ++|+++.++++||+||.++++++|.+|.. |++|+++++|++
T Consensus 22 ~tl~~~l~~~a~~~p~d~~Al~~~~~~~Ty~eL~~~~~~~A~~L~~----------------------~~~V~i~~~~~~ 79 (505)
T 3nyq_A 22 SSLFPALSPAPTGAPADRPALRFGERSLTYAELAAAAGATAGRIGG----------------------AGRVAVWATPAM 79 (505)
T ss_dssp --CCTTTSSCCCSGGGGSEEEEETTEEEEHHHHHHHHHHHHTTCC-------------------------CEEEECCSSH
T ss_pred chhHHHHHHHHHhCCCCCeEEEECCeeeeHHHHHHHHHHHHhhccC----------------------CCEEEEEcCCCH
Confidence 4677888899999887 99999999999999999999999987753 789999999999
Q ss_pred HHHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHHhccCCccccCCCCCCCCCccccccch
Q 013869 80 EFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQS 159 (435)
Q Consensus 80 ~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (435)
++++++|||+++|++++|+++.++.+++.++++.+++++++++.+... ..... ......+.. ...
T Consensus 80 ~~~~~~la~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~--~~~~~--~~~~~~~~~-----------~~~ 144 (505)
T 3nyq_A 80 ETGVAVVAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAEL--PPALG--ALERVDVDV-----------RAR 144 (505)
T ss_dssp HHHHHHHHHHHHTCCEEEECTTCCHHHHHHHHHHHCCSEEEECTTCCC--CGGGT--TSEEEECCT-----------TCC
T ss_pred HHHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHHCCCCEEEECCcccc--chhhc--ccccccccc-----------ccc
Confidence 999999999999999999999999999999999999999999875210 00000 000000000 000
Q ss_pred hhhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhccCCCCCeeEEeecchhhhHHHHHHHHHHHcCCE
Q 013869 160 QAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGAT 239 (435)
Q Consensus 160 ~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~ 239 (435)
...+.....++++++++|||||||.||+|.++|+++.+.+......+++.+.+++++.+|++|..++...++.++..|++
T Consensus 145 ~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~ 224 (505)
T 3nyq_A 145 GAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGS 224 (505)
T ss_dssp CCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCE
T ss_pred cCCCCCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHhCCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCE
Confidence 11122345678999999999999999999999999999999999999999999999999999999987778999999999
Q ss_pred EEEcCCcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccccEEEEecCCCCCHHH
Q 013869 240 VEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPV 319 (435)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~i~~~G~~l~~~l 319 (435)
+++.+.+++...++. + ++++|+++++|+++..+++.....+. ....++++|.+++||+++++++
T Consensus 225 ~~~~~~~~~~~~~~~----------i-~~~~t~~~~~P~~~~~l~~~~~~~~~-----~~~~l~~lr~i~~gg~~l~~~~ 288 (505)
T 3nyq_A 225 VRHLGRFSTEGAARE----------L-NDGATMLFGVPTMYHRIAETLPADPE-----LAKALAGARLLVSGSAALPVHD 288 (505)
T ss_dssp EEECSSCCHHHHHHH----------H-TTTCCEEEECHHHHHHHHHHGGGCHH-----HHHHHHHCSEEEECSSCCCHHH
T ss_pred EEECCCCChHHHHHH----------H-hhCCeEEEehHHHHHHHHHhhhcCch-----hhcccccceEEEECCCCCCHHH
Confidence 999999999988887 4 47999999999999999886543221 3346788999999999999999
Q ss_pred HHHHHHHhCCcccccccCccccchhccCCCCCCCCCccceecCCCeEEEecCCCCCCCC----ccceEEEecCCcccccc
Q 013869 320 MQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAA----GVGEICVKSPSLFKEYW 395 (435)
Q Consensus 320 ~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~----~~Gel~v~~~~~~~gy~ 395 (435)
.+.|.+.++.++++.||+||+++.++..........++|+|+++++++|+|++++.++. ..|||+++|++++.||+
T Consensus 289 ~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~g~~~~~~~~g~~GEl~v~g~~v~~GY~ 368 (505)
T 3nyq_A 289 HERIAAATGRRVIERYGMTETLMNTSVRADGEPRAGTVGVPLPGVELRLVEEDGTPIAALDGESVGEIQVRGPNLFTEYL 368 (505)
T ss_dssp HHHHHHHHSCCCEEEEEETTTEEEEECCTTSCCCTTCCCEECTTCEEEEC-----CCCCCCSCCCEEEEEESTTSCCEET
T ss_pred HHHHHHhcCCeeecccchhhcccccccCCCCCCCCCCcccCCCCCEEEEECCCCCCcccCCCCceEEEEEecCchhhhhC
Confidence 99999999999999999999987776655555677899999999999999999887653 47999999999999999
Q ss_pred CCchhcccccccCCccccCceEEEcCCccEEEecccc-cCC
Q 013869 396 KLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRKG-IYF 435 (435)
Q Consensus 396 ~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~gR~~-d~i 435 (435)
++|+.+.+.|+.+|||+|||+|++|+||++++.||++ |+|
T Consensus 369 ~~~~~t~~~f~~~g~y~TGDl~~~~~dG~l~~~GR~~d~~i 409 (505)
T 3nyq_A 369 NRPDATAAAFTEDGFFRTGDMAVRDPDGYVRIVGRKATDLI 409 (505)
T ss_dssp TCHHHHHHTBCTTSCEEEEEEEEECTTSCEEEEEESSCCCE
T ss_pred CChhHhhhhhcCCCCCccCCeEEECCCccEEEeCCccCceE
Confidence 9999999999989999999999999999999999984 764
No 20
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=100.00 E-value=3e-62 Score=490.28 Aligned_cols=394 Identities=20% Similarity=0.259 Sum_probs=328.4
Q ss_pred HHHHHHHhccc-----CCCeeEEEeC-----CcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEE
Q 013869 3 VFKAAYKKGSM-----ARDSVAIRAD-----QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIG 72 (435)
Q Consensus 3 i~~~~~~~~~~-----~p~~~al~~~-----~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~ 72 (435)
+.+.|.+++++ +||++|+++. ++++||+||.++++++|++|++. +|+++||+|+
T Consensus 40 ~~~~l~~~a~~~~a~~~p~~~al~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~----------------~Gv~~gd~V~ 103 (570)
T 3c5e_A 40 ASDVLDHWADMEKAGKRPPSPALWWVNGKGKELMWNFRELSENSQQAANVLSGA----------------CGLQRGDRVA 103 (570)
T ss_dssp HHHTHHHHHHHHHTTSSCCCEEEEEECSSSCEEEEEHHHHHHHHHHHHHHHHTT----------------TCCCTTCEEE
T ss_pred HHHHHHHHHhhccccCCCCceEEEEEcCCCceeEEeHHHHHHHHHHHHHHHHHc----------------cCCCCCCEEE
Confidence 45788888888 9999999972 37899999999999999999983 3999999999
Q ss_pred EEeCCCHHHHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHHhccCCc--cccCCCCCCCC
Q 013869 73 IVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAK--FSLIPPVPNVS 150 (435)
Q Consensus 73 i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 150 (435)
|+++|++++++++|||+++|++++|+++.++.+++.++++.++++++|++++..+.+.......+.. +..+... ...
T Consensus 104 i~~~n~~e~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 182 (570)
T 3c5e_A 104 VVLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSEK-SCD 182 (570)
T ss_dssp EECCSCHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHHHHGGGCTTCCEEEEESSS-CCT
T ss_pred EEcCCCHHHHHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHHHHHHhhcCCceeEEEEeccc-Ccc
Confidence 9999999999999999999999999999999999999999999999999998887776654443321 1111110 000
Q ss_pred Cccccccc----hhhhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHH--HHHHHHHhccCCCCCeeEEeecchhhh
Q 013869 151 SETTVFDQ----SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDA--QVQMLTEAWEYTSADQFLHCLPLHHVH 224 (435)
Q Consensus 151 ~~~~~~~~----~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~--~~~~~~~~~~~~~~~~~l~~~pl~~~~ 224 (435)
......+. ..........++++++|+|||||||.||+|.++|+ ++. ..... ..+++.+.|++++..|++|..
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~-~~~~~~~~d~~~~~~p~~~~~ 260 (570)
T 3c5e_A 183 GWLNFKKLLNEASTTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA-GWTGLQASDIMWTISDTGWIL 260 (570)
T ss_dssp TSEEHHHHHHHSCSCCCCCCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT-TTTSCCTTCEEEECCCTTSHH
T ss_pred ccccHHHHhhcccccccccCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh-hhcCCCCCceEEEcCchHHHH
Confidence 00000000 00011234567899999999999999999999999 444 33333 566788999999999999999
Q ss_pred HHHHHHHHHHHcCCEEEEcC--CcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhc
Q 013869 225 GLFNALLAPLYAGATVEFMP--KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAA 302 (435)
Q Consensus 225 g~~~~~~~~l~~G~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l 302 (435)
+++..++.++..|+++++.+ .+++..+++. +.++++|++.++|+++..+++.. ....++
T Consensus 261 ~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~---------~~~~~~ 321 (570)
T 3c5e_A 261 NILCSLMEPWALGACTFVHLLPKFDPLVILKT----------LSSYPIKSMMGAPIVYRMLLQQD---------LSSYKF 321 (570)
T ss_dssp HHHHTTHHHHHHTCEEEEECCSSCCHHHHHHH----------HHHSCCCEEEECHHHHHHHHTSC---------TTTCCC
T ss_pred HHHHHHHHHHHhCceEEEecCCCCCHHHHHHH----------HHHhCCeEEeccHHHHHHHHhcc---------cccccc
Confidence 98767899999999999987 6888888888 56699999999999999998741 123357
Q ss_pred cccEEEEecCCCCCHHHHHHHHHHhCCcccccccCccccchhccCCCCCCCCCccceecCCCeEEEecCCCCCCCCc-cc
Q 013869 303 KQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAG-VG 381 (435)
Q Consensus 303 ~~lr~i~~~G~~l~~~l~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~-~G 381 (435)
+++|.+++||+++++++.+.|.+.+++++++.||+||++..++.........+++|+|+++++++|+|++++.++.+ .|
T Consensus 322 ~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~g~~~~~G~~G 401 (570)
T 3c5e_A 322 PHLQNCVTVGESLLPETLENWRAQTGLDIRESYGQTETGLTCMVSKTMKIKPGYMGTAASCYDVQIIDDKGNVLPPGTEG 401 (570)
T ss_dssp TTCCEEEEESSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEECCTTSCCCTTCCCEECTTCCEEEECTTSCBCCTTCCE
T ss_pred ccceEEEEcCCcCCHHHHHHHHHHhCCchhhccchhhcccceecCcccccCCCcccccCCCceEEEECCCCCCCCCCCCC
Confidence 89999999999999999999999999999999999999876655443345678999999999999999999888777 79
Q ss_pred eEEEe-----cCCccccccCCchhcccccccCCccccCceEEEcCCccEEEecccccCC
Q 013869 382 EICVK-----SPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRKGIYF 435 (435)
Q Consensus 382 el~v~-----~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~gR~~d~i 435 (435)
||+++ |++++.||+++|+.+.+.|. +|||+|||+|++|+||+++|.||+||+|
T Consensus 402 El~v~~~~~~g~~v~~GY~~~~~~t~~~f~-~~~~~TGDlg~~d~dG~l~~~GR~dd~I 459 (570)
T 3c5e_A 402 DIGIRVKPIRPIGIFSGYVDNPDKTAANIR-GDFWLLGDRGIKDEDGYFQFMGRADDII 459 (570)
T ss_dssp EEEEECSSBCCTTCCCEETTCHHHHHHTEE-TTEEEEEEEEEECTTSCEEEEEEGGGCE
T ss_pred eeEEeccCCCCchhhccccCChhHhhhhhc-CCccccceeEEEcCCceEEEEecCCCEE
Confidence 99999 99999999999999999995 7999999999999999999999999986
No 21
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=100.00 E-value=1.1e-62 Score=492.61 Aligned_cols=382 Identities=21% Similarity=0.382 Sum_probs=318.0
Q ss_pred ChHHHHHHHhcccCCCeeEEEeCCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCCHH
Q 013869 1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE 80 (435)
Q Consensus 1 ~~i~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~~~ 80 (435)
+++.+.|.++++++||++|+++.++++||+||.++++++|++|++. |+++||+|+++++|+++
T Consensus 39 ~~l~~~l~~~a~~~p~~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~~-----------------Gv~~gd~V~i~~~n~~e 101 (563)
T 1amu_A 39 KTIHQLFEEQVSKRPNNVAIVCENEQLTYHELNVKANQLARIFIEK-----------------GIGKDTLVGIMMEKSID 101 (563)
T ss_dssp CCHHHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHT-----------------TCCTTCEEEEECCSSHH
T ss_pred CcHHHHHHHHHHHCCCCeEEEeCCceecHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEEeCCCHH
Confidence 3689999999999999999999999999999999999999999994 99999999999999999
Q ss_pred HHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHHhccCCccccCCCCCCCCCccccccchh
Q 013869 81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQ 160 (435)
Q Consensus 81 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (435)
+++++|||+++|++++|+++.++.+++.++++.++++++|++++....+..... ...+..+.. ..... ...
T Consensus 102 ~~~~~lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~li~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~------~~~ 172 (563)
T 1amu_A 102 LFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQF--NGQVEIFEE-DTIKI------REG 172 (563)
T ss_dssp HHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSCC--CSEEEECCC-STTTT------SCC
T ss_pred HHHHHHHHHHhCCEEEEeCCCCcHHHHHHHHHhcCCCEEEEcCchhhhhhhccc--cCceeeecc-hhhcc------ccC
Confidence 999999999999999999999999999999999999999999987654432211 011111110 00000 000
Q ss_pred hhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhccCCCCCeeEEeecchhhhHHHHHHHHHHHcCCEE
Q 013869 161 AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATV 240 (435)
Q Consensus 161 ~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~ 240 (435)
........++++++++|||||||.||||.++|+++.+........+++.++|++++.+|++|..+++ .++.++..|+++
T Consensus 173 ~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~-~~~~~l~~G~~~ 251 (563)
T 1amu_A 173 TNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVW-EMFMALLTGASL 251 (563)
T ss_dssp SCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHHHH-HHHHHHTTTCEE
T ss_pred ccCCCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHHHHHH-HHHHHHHCCCEE
Confidence 1112244678999999999999999999999999999888888888999999999999999999886 588999999999
Q ss_pred EEcCC---cchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccccEEEEecCCCCCH
Q 013869 241 EFMPK---FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPL 317 (435)
Q Consensus 241 ~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~i~~~G~~l~~ 317 (435)
++.+. +++..+++. +.++++|++.++|+++..+... .++++|.+++||+++++
T Consensus 252 v~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~--------------~~~~lr~~~~gG~~l~~ 307 (563)
T 1amu_A 252 YIILKDTINDFVKFEQY----------INQKEITVITLPPTYVVHLDPE--------------RILSIQTLITAGSATSP 307 (563)
T ss_dssp EECCHHHHTCHHHHHHH----------HHHTTCCEEEECHHHHTTSCTT--------------TCCSCSEEEEESSCCCH
T ss_pred EEcChHhhcCHHHHHHH----------HHHcCCcEEEeCHHHHHHHHhc--------------ccccccEEEEEEecCCH
Confidence 99886 466666666 6669999999999998777432 35789999999999999
Q ss_pred HHHHHHHHHhCCcccccccCccccchhccCC---CCCCCCCccceecCCCeEEEecCCCCCCCCc-cceEEEecCCcccc
Q 013869 318 PVMQQWETITGHRLLERYGMTEFVMAISNPL---RGARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSLFKE 393 (435)
Q Consensus 318 ~l~~~~~~~~~~~l~~~YG~tE~~~~~~~~~---~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~-~Gel~v~~~~~~~g 393 (435)
++.++|.+. +++++.||+||++.+++... .......++|+|+++++++|+|++++.++.+ .|||+++|++++.|
T Consensus 308 ~~~~~~~~~--~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~g~~GEl~v~g~~v~~G 385 (563)
T 1amu_A 308 SLVNKWKEK--VTYINAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVDENLQLKSVGEAGELCIGGEGLARG 385 (563)
T ss_dssp HHHHHHTTT--SEEEEEECCGGGSSCSEEEECCSSCCCSSCCCBEECTTEEEEEECTTSCBCCTTCEEEEEEEETTCCCE
T ss_pred HHHHHHHhC--CeEEEEECcCHHhHhheeeecccccCCCCCcccceeCCCEEEEECCCcCCCCCCCcEEEEEechhhChh
Confidence 999999874 78999999999986655321 1123567899999999999999999888777 79999999999999
Q ss_pred ccCCchhccccccc------CCccccCceEEEcCCccEEEecccccCC
Q 013869 394 YWKLPKVTKDSFTA------DGFFKTGDTGKQDEDGYYIILGRKGIYF 435 (435)
Q Consensus 394 y~~~~~~~~~~~~~------~g~~~TGD~g~~~~dG~l~~~gR~~d~i 435 (435)
|+++|+.|.+.|.. ++||+|||+|++|+||+|+|.||+||+|
T Consensus 386 Y~~~pe~t~~~f~~~~~~~g~~w~~TGDlg~~d~dG~l~i~GR~~d~I 433 (563)
T 1amu_A 386 YWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQV 433 (563)
T ss_dssp ETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEEEEGGGEE
T ss_pred hCCCchhhhhhcccCCCCCCCEEEecCCEEEEcCCCeEEEeccccCEE
Confidence 99999999998853 4699999999999999999999999986
No 22
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=100.00 E-value=3.7e-62 Score=496.81 Aligned_cols=400 Identities=20% Similarity=0.274 Sum_probs=326.7
Q ss_pred HHHHHHHhcccCCCeeEEEe------CCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeC
Q 013869 3 VFKAAYKKGSMARDSVAIRA------DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAK 76 (435)
Q Consensus 3 i~~~~~~~~~~~p~~~al~~------~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~ 76 (435)
++++|.++++++||++|+++ ..+++||+||.++++++|++|++ +|+++||+|+|+++
T Consensus 78 ~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~-----------------~Gv~~Gd~V~i~~~ 140 (652)
T 1pg4_A 78 AANCLDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLD-----------------LGIKKGDVVAIYMP 140 (652)
T ss_dssp HHHHTGGGHHHHTTSEEEEEECSSTTCEEEEEHHHHHHHHHHHHHHHHH-----------------HTCCTTCEEEEECC
T ss_pred HHHHHHHHhccCCCceEEEEEcCCCCceeEEeHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEeC
Confidence 56778889999999999997 34789999999999999999999 59999999999999
Q ss_pred CCHHHHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhh---------HHHHHHHHhccC----CccccC
Q 013869 77 PSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDY---------REVLQNVASKSG----AKFSLI 143 (435)
Q Consensus 77 ~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~---------~~~~~~~~~~~~----~~~~~~ 143 (435)
|++++++++|||+++|++++|+++.++.+++.++++.+++++||+++.. .+.+........ ..+..+
T Consensus 141 ~~~e~vva~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~ 220 (652)
T 1pg4_A 141 MVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVL 220 (652)
T ss_dssp SSHHHHHHHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEE
T ss_pred CCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEEEE
Confidence 9999999999999999999999999999999999999999999998753 233333333221 112221
Q ss_pred CCCC-CCC--C--ccccccc----hhhhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHH-HHHHhccCCCCCe
Q 013869 144 PPVP-NVS--S--ETTVFDQ----SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQ-MLTEAWEYTSADQ 213 (435)
Q Consensus 144 ~~~~-~~~--~--~~~~~~~----~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~-~~~~~~~~~~~~~ 213 (435)
.... ... . .....+. ..........++++++|+|||||||.||||.++|++++.... .....+++.++|+
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~ 300 (652)
T 1pg4_A 221 KRTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDI 300 (652)
T ss_dssp CSSCCCCCCCBTTEEEHHHHHTTSCSCCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCE
T ss_pred eCCCCcccccCCCceeHHHHHhhcCCCCCccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhcCCCCCCE
Confidence 1110 000 0 0000000 000112234578999999999999999999999999877664 4456678999999
Q ss_pred eEEeecchhhhHHHHHHHHHHHcCCEEEEcCC----cchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhcc
Q 013869 214 FLHCLPLHHVHGLFNALLAPLYAGATVEFMPK----FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEA 289 (435)
Q Consensus 214 ~l~~~pl~~~~g~~~~~~~~l~~G~~~~~~~~----~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~ 289 (435)
+++..|++|..++...++.+|..|+++++.+. +++..+++. ++++++|+++++|++++.|++....
T Consensus 301 ~l~~~~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~----------i~~~~vt~~~~~P~~~~~l~~~~~~ 370 (652)
T 1pg4_A 301 YWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQV----------VDKHQVNILYTAPTAIRALMAEGDK 370 (652)
T ss_dssp EEECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHH----------HHHHTCSEEEECHHHHHHHHTTGGG
T ss_pred EEEccCCeeeechHHHHHHHHHcCceEEEECCCCCCCCHHHHHHH----------HHHhCCeEEEeCHHHHHHHHhcCcc
Confidence 99999999999986678999999999999875 578888888 6669999999999999999875331
Q ss_pred ccHHHHHHhhhhccccEEEEecCCCCCHHHHHHHHHHhC---CcccccccCccccchhccCCC--CCCCCCccceecCCC
Q 013869 290 MDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITG---HRLLERYGMTEFVMAISNPLR--GARKAGTVGNPLPGV 364 (435)
Q Consensus 290 ~~~~~~~~~~~~l~~lr~i~~~G~~l~~~l~~~~~~~~~---~~l~~~YG~tE~~~~~~~~~~--~~~~~~~~G~p~~~~ 364 (435)
.....++++||.+++||+++++++++.|.+.++ +++++.||+||+++.++.... ...+.+++|+|++|+
T Consensus 371 ------~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~s~G~p~~g~ 444 (652)
T 1pg4_A 371 ------AIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGV 444 (652)
T ss_dssp ------GTTTCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGGSSCSBCCCTTTCCBCTTCCBSBCTTC
T ss_pred ------ccccCCcCceEEEEEecCCCCHHHHHHHHHHhCCCCCcEEccccCcccccceecCCCCCcCccCCccccCcCCC
Confidence 112346899999999999999999999999988 899999999999876554322 235678999999999
Q ss_pred eEEEecCCCCCCCCc-cceEEEec--CCccccccCCchhcccccc--cCCccccCceEEEcCCccEEEecccccCC
Q 013869 365 QVKIAEDESGSDAAG-VGEICVKS--PSLFKEYWKLPKVTKDSFT--ADGFFKTGDTGKQDEDGYYIILGRKGIYF 435 (435)
Q Consensus 365 ~~~i~d~~~~~~~~~-~Gel~v~~--~~~~~gy~~~~~~~~~~~~--~~g~~~TGD~g~~~~dG~l~~~gR~~d~i 435 (435)
+++|+|++++.++.+ .|||+++| |+++.||+++++.+.+.|. .+|||+|||+|++|+||+|+|+||+||+|
T Consensus 445 ~v~i~d~~g~~v~~g~~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~I 520 (652)
T 1pg4_A 445 QPALVDNEGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVL 520 (652)
T ss_dssp CEEEECTTCCBCCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSEEEEEEEEECTTSCEEEEEESSSEE
T ss_pred eEEEECCCCCCcCCCceEEEEEccCCCchhhhhcCCHHHHHhhhhhcCCCEEECCcEEEEcCCCcEEEEecCCCEE
Confidence 999999999988877 69999999 7999999999998887763 37899999999999999999999999986
No 23
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=100.00 E-value=2.2e-62 Score=486.13 Aligned_cols=386 Identities=19% Similarity=0.333 Sum_probs=326.2
Q ss_pred ChHHHHHHHhcccCCCeeEEEeCCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCCHH
Q 013869 1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE 80 (435)
Q Consensus 1 ~~i~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~~~ 80 (435)
||+.+.|.++|+++|+++|+++.++++||+||.++++++|++|.++ .+.++|++|+++++|+++
T Consensus 1 m~l~~~l~~~a~~~p~~~Al~~~~~~~Ty~eL~~~~~~~A~~L~~~----------------~~~~~g~~V~i~~~n~~~ 64 (511)
T 3e7w_A 1 MKLLHAIQTHAETYPQTDAFRSQGQSLTYQELWEQSDRAAAAIQKR----------------ISGEKKSPILVYGHMEPH 64 (511)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHTTT----------------SCSSSCCCEEEEESSCHH
T ss_pred CcHHHHHHHHHHHCCCCeEEEcCCceeeHHHHHHHHHHHHHHHHHh----------------cCCCCCCeEEEEecCCHH
Confidence 8999999999999999999999999999999999999999999985 478899999999999999
Q ss_pred HHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHHhccCCccccCCCCCCCCCccccc--cc
Q 013869 81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVF--DQ 158 (435)
Q Consensus 81 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 158 (435)
+++++|||+++|++++|+++.++.+++.++++.++++++|++..... .........+ . ..... ..
T Consensus 65 ~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~------~~~~~~~~~~------~-~~~~~~~~~ 131 (511)
T 3e7w_A 65 MIVSFLGSVKAGHPYIPVDLSIPSERIAKIIESSGAELLIHAAGLSI------DAVGQQIQTV------S-AEELLENEG 131 (511)
T ss_dssp HHHHHHHHHHHTCCEEEEETTSCHHHHHHHHHHHTCCEEEESSSCCT------TCCCCSSCEE------E-HHHHHTSCS
T ss_pred HHHHHHHHHHhCCEEEecCCCChHHHHHHHHHhCCCCEEEecccccc------hhccccccee------c-Hhhhhcccc
Confidence 99999999999999999999999999999999999999999754210 0000000000 0 00000 00
Q ss_pred hhhhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhccCCCCCeeEEeecchhhhHHHHHHHHHHHcCC
Q 013869 159 SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGA 238 (435)
Q Consensus 159 ~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~ 238 (435)
..........++++++++|||||||.||+|.++|+++.+.+.+....+++.+++++++.+|++|..+++ .++.++..|+
T Consensus 132 ~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~-~~~~~l~~G~ 210 (511)
T 3e7w_A 132 GSVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADFPVSGGKIFLNQAPFSFDLSVM-DLYPCLQSGG 210 (511)
T ss_dssp CCCCGGGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHSTTTTTCEEEECSCTTSTHHHH-HHHHHHHTTC
T ss_pred CCccccccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCccceEEEeCCccHHHHHH-HHHHHHhcCC
Confidence 001112345678999999999999999999999999999999999999999999999999999999986 5999999999
Q ss_pred EEEEcCC---cchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccccEEEEecCCCC
Q 013869 239 TVEFMPK---FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSAL 315 (435)
Q Consensus 239 ~~~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~i~~~G~~l 315 (435)
++++.+. +++..+++. +.++++|++.++|+++..+++... .....++++|.+++||+++
T Consensus 211 ~~~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~--------~~~~~~~~l~~~~~~G~~l 272 (511)
T 3e7w_A 211 TLHCVTKDAVNKPKVLFEE----------LKKSGLNVWTSTPSFVQMCLMDPG--------FSQDLLPHADTFMFCGEVL 272 (511)
T ss_dssp EEEECCHHHHHSHHHHHHH----------HHHHCCSEEEECHHHHHHHHTSTT--------CSTTTCTTCCEEEECSSCC
T ss_pred EEEEcChhhhcCHHHHHHH----------HHHcCCcEEEecHHHHHHHHhccc--------cccccCCcccEEEEecCCC
Confidence 9999987 567777777 566899999999999999987532 2334678999999999999
Q ss_pred CHHHHHHHHHHh-CCcccccccCccccchhccCCC-----CCCCCCccceecCCCeEEEecCCCCCCCCc-cceEEEecC
Q 013869 316 PLPVMQQWETIT-GHRLLERYGMTEFVMAISNPLR-----GARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSP 388 (435)
Q Consensus 316 ~~~l~~~~~~~~-~~~l~~~YG~tE~~~~~~~~~~-----~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~-~Gel~v~~~ 388 (435)
++++.+.|.+.| ++++++.||+||+++.++.... ......++|+|+++++++|+|++++.++.+ .|||+++|+
T Consensus 273 ~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~g~~~~~g~~GEl~v~g~ 352 (511)
T 3e7w_A 273 PVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEITNDVISRSESLPVGFAKPDMNIFIMDEEGQPLPEGEKGEIVIAGP 352 (511)
T ss_dssp CHHHHHHHHHHCTTCEEEECCCCGGGSSCSEEEEECHHHHTTCSSCCCBEECTTCEEEEECTTSCBCCTTCCEEEEEEST
T ss_pred CHHHHHHHHHHCCCcEEEeCcccchheeeeeEEeccccccccCCcCCCcceeCCCEEEEECCCCCCCCCCCceEEEEecC
Confidence 999999999999 8899999999999876553211 223556799999999999999999988777 799999999
Q ss_pred CccccccCCchhccccccc-CC--ccccCceEEEcCCccEEEecccccCC
Q 013869 389 SLFKEYWKLPKVTKDSFTA-DG--FFKTGDTGKQDEDGYYIILGRKGIYF 435 (435)
Q Consensus 389 ~~~~gy~~~~~~~~~~~~~-~g--~~~TGD~g~~~~dG~l~~~gR~~d~i 435 (435)
+++.||+++|+.+++.|.. +| ||+|||+|++ +||++++.||.||+|
T Consensus 353 ~v~~GY~~~~~~t~~~f~~~~g~~~~~TGDlg~~-~dG~l~~~GR~~d~i 401 (511)
T 3e7w_A 353 SVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFI-QDGQIFCQGRLDFQI 401 (511)
T ss_dssp TSCCCBTTCHHHHHHHEEESSSSEEEEEEEEEEE-ETTEEEEEEESSSEE
T ss_pred ccChhhCCCcccchhhhcCCCCCEEEeCCCeEEc-cCCeEEEEccccCEE
Confidence 9999999999999999842 23 7999999999 699999999999986
No 24
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=100.00 E-value=5e-62 Score=518.13 Aligned_cols=400 Identities=22% Similarity=0.322 Sum_probs=336.4
Q ss_pred ChHHHHHHHhcccCCCeeEEEeC--CcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCC
Q 013869 1 MEVFKAAYKKGSMARDSVAIRAD--QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPS 78 (435)
Q Consensus 1 ~~i~~~~~~~~~~~p~~~al~~~--~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~ 78 (435)
+|++++|.++++++||++|+++. ++++||+||.++++++|++|++. |+++||+|+|+++|+
T Consensus 61 ~tl~~~l~~~a~~~pd~~Al~~~~~~~~~TY~eL~~~~~~lA~~L~~~-----------------Gv~~gd~V~i~~~ns 123 (979)
T 3tsy_A 61 LSLHDYIFQNISEFATKPCLINGPTGHVYTYSDVHVISRQIAANFHKL-----------------GVNQNDVVMLLLPNC 123 (979)
T ss_dssp SCHHHHHTTTGGGTTTSEEEEETTTCCEEEHHHHHHHHHHHHHHHHHT-----------------TCCTTCEEEEECSSC
T ss_pred CCHHHHHHHHHHhCCCCeEEEECCCCcEEEHHHHHHHHHHHHHHHHHc-----------------CCCCcCEEEEEeCCC
Confidence 57899999999999999999985 78999999999999999999994 999999999999999
Q ss_pred HHHHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHHhccCCccccCCCCCCCCCc------
Q 013869 79 FEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSE------ 152 (435)
Q Consensus 79 ~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 152 (435)
+++++++|||+++|++++|++|.++.+++.++++.++++++|++.+..+.+..........+..+.........
T Consensus 124 ~e~~v~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (979)
T 3tsy_A 124 PEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQNDDGVVIVCIDDNESVPIPEGCLRF 203 (979)
T ss_dssp HHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHTEEEEEECSTTTTTSHHHHHTSCCEEEECCCCTTSCCCTTEEEG
T ss_pred HHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHHHHHhhcCCceEEEeCCcccccCCcccccH
Confidence 99999999999999999999999999999999999999999999887766555544333322222211110000
Q ss_pred cccc----cchhhhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHH----hccCCCCCeeEEeecchhhh
Q 013869 153 TTVF----DQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTE----AWEYTSADQFLHCLPLHHVH 224 (435)
Q Consensus 153 ~~~~----~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~----~~~~~~~~~~l~~~pl~~~~ 224 (435)
.... ......+.....++++++|+|||||||.||+|.++|+++.+.+..... .+.+.+.+++++.+|++|..
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~ 283 (979)
T 3tsy_A 204 TELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIY 283 (979)
T ss_dssp GGTSSCCSGGGGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCSSSHH
T ss_pred HHHhhccccccccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECchHHHH
Confidence 0000 001112233567899999999999999999999999999988777654 34577899999999999999
Q ss_pred HHHHHHHHHHHcCCEEEEcCCcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccc
Q 013869 225 GLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQ 304 (435)
Q Consensus 225 g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~ 304 (435)
++...++.++..|+++++.+++++..+++. +.++++|++.++|+++..+++..+ ....++++
T Consensus 284 ~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~--------~~~~~l~~ 345 (979)
T 3tsy_A 284 ALNSIMLCGLRVGAAILIMPKFEINLLLEL----------IQRCKVTVAPMVPPIVLAIAKSSE--------TEKYDLSS 345 (979)
T ss_dssp HHHHTHHHHHHHTCEEEECSSCCHHHHHHH----------HHHHTCCEEEECHHHHHHHHHCGG--------GGTSCCTT
T ss_pred HHHHHHHHHHhcCcEEEEeCCCCHHHHHHH----------HHHhCCeEEEcHHHHHHHHHhCcc--------ccCCCccc
Confidence 997778899999999999999999988888 566899999999999999987633 23346899
Q ss_pred cEEEEecCCCCCHHHHHHHHHHh-CCcccccccCccccchhccC-----CCCCCCCCccceecCCCeEEEecC-CCCCCC
Q 013869 305 LRLMMCGSSALPLPVMQQWETIT-GHRLLERYGMTEFVMAISNP-----LRGARKAGTVGNPLPGVQVKIAED-ESGSDA 377 (435)
Q Consensus 305 lr~i~~~G~~l~~~l~~~~~~~~-~~~l~~~YG~tE~~~~~~~~-----~~~~~~~~~~G~p~~~~~~~i~d~-~~~~~~ 377 (435)
+|.+++||+++++++.+.|.+.| ++++++.||+||++.+++.. .......+++|+|+++++++|+|+ +++.++
T Consensus 346 lr~~~~gg~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~ 425 (979)
T 3tsy_A 346 IRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLS 425 (979)
T ss_dssp CCEEEESSCCCCSSHHHHHHHHCTTCEEEECEECGGGCSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTSCCBCC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHCCCCeEEeeechhhhhHHHHhCCCCCCCccccCCCCcCcccCCcEEEEEeCCCCCCCC
Confidence 99999999999999999999998 88999999999998654422 222346778999999999999994 467766
Q ss_pred Cc-cceEEEecCCccccccCCchhcccccccCCccccCceEEEcCCccEEEecccccCC
Q 013869 378 AG-VGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRKGIYF 435 (435)
Q Consensus 378 ~~-~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~gR~~d~i 435 (435)
.+ .|||+++|++++.||+++|+.+.+.|+.+|||+|||+|++|+||+|+|.||+||+|
T Consensus 426 ~g~~GEl~i~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~i 484 (979)
T 3tsy_A 426 RNQPGEICIRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLIDDDDELFIVDRLKELI 484 (979)
T ss_dssp TTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEESCC--
T ss_pred CCCccEEEEECCCccccccCChhhhhhhccCCCcEEcCCEEEEcCCceEEEecCCCCEE
Confidence 66 79999999999999999999999999999999999999999999999999999986
No 25
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=100.00 E-value=1.3e-62 Score=489.14 Aligned_cols=388 Identities=19% Similarity=0.294 Sum_probs=322.3
Q ss_pred ChHHHHHHHhcccCCCeeEEEeCCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCCHH
Q 013869 1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE 80 (435)
Q Consensus 1 ~~i~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~~~ 80 (435)
+|+.+.|.++++++|+++|+++.++++||+||.++++++|++|.+. |+++||+|+++++|+++
T Consensus 4 ~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~lA~~L~~~-----------------g~~~gd~V~i~~~n~~~ 66 (521)
T 3l8c_A 4 KDMIDSIEQFAQTQADFPVYDCLGERRTYGQLKRDSDSIAAFIDSL-----------------ALLAKSPVLVFGAQTYD 66 (521)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHT-----------------CCCTTCCEEEEECSSHH
T ss_pred HHHHHHHHHHHHHCCCCcceecCCCeecHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEEeCCCHH
Confidence 4689999999999999999999999999999999999999999994 99999999999999999
Q ss_pred HHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHHhccCCccccCCCCCCCCCccccccchh
Q 013869 81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQ 160 (435)
Q Consensus 81 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (435)
+++++|||+++|++++|+++.++.+++.++++.+++++++++++....+.. .....+ ... ........+
T Consensus 67 ~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~------~~~~~~---~~~--~~~~~~~~~ 135 (521)
T 3l8c_A 67 MLATFVALTKSGHAYIPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTIEG------ISLVSL---SEI--ESAKLAEMP 135 (521)
T ss_dssp HHHHHHHHHHTTCCEEEEETTSCHHHHHHHHHHSCCSEEEESSCCCSCCTT------SEEEEH---HHH--HHHHHHTCC
T ss_pred HHHHHHHHHHhCCEEEecCccccHHHHHHHHHhCCCCEEEecCcccccccc------Ccccch---hhh--hhcccccCC
Confidence 999999999999999999999999999999999999999998754211000 000000 000 000000001
Q ss_pred hhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHh--ccCCCCCeeEEeecchhhhHHHHHHHHHHHcCC
Q 013869 161 AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEA--WEYTSADQFLHCLPLHHVHGLFNALLAPLYAGA 238 (435)
Q Consensus 161 ~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~--~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~ 238 (435)
........++++++++|||||||.||+|.++|+++.+...+.... +++...++++...|++|..++. .++.++..|+
T Consensus 136 ~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~l~~G~ 214 (521)
T 3l8c_A 136 YERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPPYSFDLSVM-YWAPTLALGG 214 (521)
T ss_dssp CCCSSCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCTTTCCCSSCEEECCSCTTSGGGHH-HHHHHHHTTC
T ss_pred cccCCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhccccCCCCCCeEEecCCccHHHHHH-HHHHHHhcCC
Confidence 112234567999999999999999999999999999888877665 6778899999999999999876 5889999999
Q ss_pred EEEEcCCc---chhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccccEEEEecCCCC
Q 013869 239 TVEFMPKF---SVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSAL 315 (435)
Q Consensus 239 ~~~~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~i~~~G~~l 315 (435)
++++.+.+ ++..++.. +.++++|++.++|+++..++...+ .....++++|.+++||+++
T Consensus 215 ~~~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~--------~~~~~~~~lr~~~~gG~~l 276 (521)
T 3l8c_A 215 TLFALPKELVADFKQLFTT----------IAQLPVGIWTSTPSFADMAMLSDD--------FCQAKMPALTHFYFDGEEL 276 (521)
T ss_dssp EEEECCGGGTTCHHHHHHH----------HHHSCCSEEEECHHHHHHHHTSTT--------CSTTTCTTCCEEEECSSCC
T ss_pred EEEEcCHHHhhCHHHHHHH----------HHHcCCcEEEeCCCHHHHHhhhhc--------cccccCccceEEEEecccC
Confidence 99999876 56666666 667999999999999998876532 2234678999999999999
Q ss_pred CHHHHHHHHHHh-CCcccccccCccccchhccCCC-----CCCCCCccceecCCCeEEEecCCCCCCCCc-cceEEEecC
Q 013869 316 PLPVMQQWETIT-GHRLLERYGMTEFVMAISNPLR-----GARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSP 388 (435)
Q Consensus 316 ~~~l~~~~~~~~-~~~l~~~YG~tE~~~~~~~~~~-----~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~-~Gel~v~~~ 388 (435)
++++.+++.+.+ ++++++.||+||++++++.... ......++|+|+++++++|+|++++.++.+ .|||+++|+
T Consensus 277 ~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~g~~~~~g~~GEl~v~g~ 356 (521)
T 3l8c_A 277 TVSTARKLFERFPSAKIINAYGPTEATVALSAIEITREMVDNYTRLPIGYPKPDSPTYIIDEDGKELSSGEQGEIIVTGP 356 (521)
T ss_dssp CHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEEECHHHHHHCSSCEEEEECTTSCEEEECTTSCBCCTTCCEEEEEEST
T ss_pred CHHHHHHHHHHCCCceEEeCcCccHHhhhhceeecccccccCCCccccccccCCCEEEEECCCcCCCCCCCceEEEeccc
Confidence 999999999998 8899999999999876553211 123556899999999999999999888777 799999999
Q ss_pred CccccccCCchhccccc---ccCCccccCceEEEcCCccEEEecccccCC
Q 013869 389 SLFKEYWKLPKVTKDSF---TADGFFKTGDTGKQDEDGYYIILGRKGIYF 435 (435)
Q Consensus 389 ~~~~gy~~~~~~~~~~~---~~~g~~~TGD~g~~~~dG~l~~~gR~~d~i 435 (435)
+++.||+++++.+.+.| +++|||+|||+|++|+||++++.||+||+|
T Consensus 357 ~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~d~dG~l~~~GR~~d~i 406 (521)
T 3l8c_A 357 AVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTEDNILLYGGRLDFQI 406 (521)
T ss_dssp TSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEECSSSCEEEEEEGGGBC
T ss_pred ccChhhcCCchHhhccCcCCCCceeeeCCCEEEEeCCCeEEEeCcccceE
Confidence 99999999999999988 557899999999999999999999999987
No 26
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=100.00 E-value=1.5e-61 Score=492.53 Aligned_cols=401 Identities=19% Similarity=0.300 Sum_probs=325.9
Q ss_pred hHHHHHHHhcccCCCeeEEEe------CCcccCHHHHHHHHHHHHHHHh-hCCCCCccccccccccccccCCCCCeEEEE
Q 013869 2 EVFKAAYKKGSMARDSVAIRA------DQKSYSYDQLASSALRISSLLC-SNDLKTTSEKTKNENSAVLAGGCGARIGIV 74 (435)
Q Consensus 2 ~i~~~~~~~~~~~p~~~al~~------~~~~~Ty~el~~~~~~la~~L~-~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~ 74 (435)
++.++|.++++++||++|+++ ..+++||+||.++++++|+.|+ + +|+++||+|+|+
T Consensus 83 ~~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~~TY~eL~~~v~~lA~~L~~~-----------------~Gv~~Gd~V~i~ 145 (663)
T 1ry2_A 83 ACYNCVDRHALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYS-----------------MGVRKGDTVAVY 145 (663)
T ss_dssp HHHHHTHHHHTTCTTSEEEEEECSSTTCCEEEEHHHHHHHHHHHHHHHHHT-----------------SCCCTTCEEEEC
T ss_pred HHHHHHHHHhccCCCceEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHh-----------------cCCCCCCEEEEE
Confidence 457788899999999999997 3478999999999999999999 7 499999999999
Q ss_pred eCCCHHHHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhh---------HHHHHHHHhccCC--ccccC
Q 013869 75 AKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDY---------REVLQNVASKSGA--KFSLI 143 (435)
Q Consensus 75 ~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~---------~~~~~~~~~~~~~--~~~~~ 143 (435)
++|++++++++|||+++|++++|+++.++.+++.++++.+++++||+++.. .+.+.......+. .+..+
T Consensus 146 ~~~~~e~v~a~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~ 225 (663)
T 1ry2_A 146 MPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVY 225 (663)
T ss_dssp CCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEE
T ss_pred cCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhCCCCceEEEE
Confidence 999999999999999999999999999999999999999999999998754 2333333332221 12211
Q ss_pred CCCC--CCC--C--ccccccc----hhhhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHH-HHHHhccCCCCC
Q 013869 144 PPVP--NVS--S--ETTVFDQ----SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQ-MLTEAWEYTSAD 212 (435)
Q Consensus 144 ~~~~--~~~--~--~~~~~~~----~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~-~~~~~~~~~~~~ 212 (435)
.... ... . .....+. ....+.....++++++|+|||||||.||||.++|++++.... .....+++.++|
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d 305 (663)
T 1ry2_A 226 RKTNNPSVAFHAPRDLDWATEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQED 305 (663)
T ss_dssp CSSCCSSCCCCSSSEEEHHHHHTTSCSCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSC
T ss_pred ecCCCCccccCCCccccHHHHHhhcCCCCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhcCCCCCc
Confidence 1110 000 0 0000000 000112344678999999999999999999999999876664 345567899999
Q ss_pred eeEEeecchhhhHHHHHHHHHHHcCCEEEEcCC----cchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhc
Q 013869 213 QFLHCLPLHHVHGLFNALLAPLYAGATVEFMPK----FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYE 288 (435)
Q Consensus 213 ~~l~~~pl~~~~g~~~~~~~~l~~G~~~~~~~~----~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~ 288 (435)
++++..|++|..+....++.+|..|+++++.+. +++..+++. |+++++|+++++|++++.|.+...
T Consensus 306 ~~~~~~~~~~~~g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~----------i~~~~vt~~~~~Ps~~~~l~~~~~ 375 (663)
T 1ry2_A 306 VFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDI----------IDEHKVTQFYVAPTALRLLKRAGD 375 (663)
T ss_dssp EEEECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHH----------HHHTTCSEEEECHHHHHHHTTSCT
T ss_pred EEEEcCCcHHhhhhHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHH----------HHHcCCCEEEecHHHHHHHHhcCc
Confidence 999999999999986678999999999999875 577888888 666999999999999999987532
Q ss_pred cccHHHHHHhhhhccccEEEEecCCCCCHHHHHHHHHHhC---CcccccccCccccchhccCCC---CCCCCCccceecC
Q 013869 289 AMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITG---HRLLERYGMTEFVMAISNPLR---GARKAGTVGNPLP 362 (435)
Q Consensus 289 ~~~~~~~~~~~~~l~~lr~i~~~G~~l~~~l~~~~~~~~~---~~l~~~YG~tE~~~~~~~~~~---~~~~~~~~G~p~~ 362 (435)
.. ....++++||.+++||+++++++++.+.+.++ +++++.||+||+++.++.... ...+.+++|+|++
T Consensus 376 ~~------~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~gs~G~p~~ 449 (663)
T 1ry2_A 376 SY------IENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFF 449 (663)
T ss_dssp TS------SSSCCCTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTCSCSEECCTTTCCCCCTTCCCEECT
T ss_pred cc------cccCCcCceEEEEEEcCCCCHHHHHHHHHHhCCCCceEEEeECCccccCeeeccCCCCCcccCCCccccCcC
Confidence 10 12346899999999999999999999999987 899999999999865553322 2356789999999
Q ss_pred CCeEEEecC-CCCCCCC-c-cceEEEec--CCccccccCCchhccccccc--CCccccCceEEEcCCccEEEecccccCC
Q 013869 363 GVQVKIAED-ESGSDAA-G-VGEICVKS--PSLFKEYWKLPKVTKDSFTA--DGFFKTGDTGKQDEDGYYIILGRKGIYF 435 (435)
Q Consensus 363 ~~~~~i~d~-~~~~~~~-~-~Gel~v~~--~~~~~gy~~~~~~~~~~~~~--~g~~~TGD~g~~~~dG~l~~~gR~~d~i 435 (435)
|++++|+|+ +++.++. + .|||+++| |+++.||+++++.+.+.|.. +|||+|||+|++|+||+++|+||+||+|
T Consensus 450 g~~v~i~d~~~g~~v~~~g~~Gel~i~g~~p~~~~gy~~~~~~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~I 529 (663)
T 1ry2_A 450 GIDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVV 529 (663)
T ss_dssp TCCEEEECSSSTTCEECSSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTTSEEEEEEEEECTTCCEEECSCTTSCB
T ss_pred CCeEEEEcCCCCCcCCCCCcceEEEEecCCCchhcccccChHHHHHhhhcCCCCEEEcCCEEEEcCCCCEEEEeecCCEE
Confidence 999999998 8888765 4 79999999 58999999999998888743 7899999999999999999999999986
No 27
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=100.00 E-value=7.9e-62 Score=481.28 Aligned_cols=386 Identities=24% Similarity=0.330 Sum_probs=317.5
Q ss_pred ChHHHHHHHhcccCCCeeEEEeCCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCCHH
Q 013869 1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE 80 (435)
Q Consensus 1 ~~i~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~~~ 80 (435)
|||.+.|.++++++||++|+++.++++||+||.++++++|++|++ . +||+|+++++|+++
T Consensus 1 mtl~~~l~~~a~~~pd~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~-----------------~---~gd~V~i~~~n~~e 60 (501)
T 3ipl_A 1 MSLDFWLYKQAQQNGHHIAITDGQESYTYQNLYCEASLLAKRLKA-----------------Y---QQSRVGLYIDNSIQ 60 (501)
T ss_dssp --CCCHHHHHHHHHTTSEEEECSSCEEEHHHHHHHHHHHHHHHHT-----------------T---CCSEEEEECCSSHH
T ss_pred CCHHHHHHHHHHhcCCceEEEeCCcEEEHHHHHHHHHHHHHHHHH-----------------c---CCCEEEEEcCCCHH
Confidence 789999999999999999999999999999999999999999987 2 79999999999999
Q ss_pred HHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHHhccCCcccc-CCCCCC-------C---
Q 013869 81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSL-IPPVPN-------V--- 149 (435)
Q Consensus 81 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-------~--- 149 (435)
+++++|||+++|++++|+++.++.+++.++++.++++++|++.+.................. ...... .
T Consensus 61 ~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (501)
T 3ipl_A 61 SIILIHACWLANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVSLDDIEFAGRDITTNGLLDNTMGIQYD 140 (501)
T ss_dssp HHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEETTC-----------------------
T ss_pred HHHHHHHHHHcCCEEEecCccCCHHHHHHHHHhcCCCEEEEccccccccccccccccceeeeeecccccccccccccccc
Confidence 99999999999999999999999999999999999999999876533211100000000000 000000 0
Q ss_pred CCcccc--ccchhhhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhccCCCCCeeEEeecchhhhHHH
Q 013869 150 SSETTV--FDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLF 227 (435)
Q Consensus 150 ~~~~~~--~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~ 227 (435)
...... .............++++++++|||||||.||+|.++|+++.+........+++.+++++++.+|++|..++.
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~ 220 (501)
T 3ipl_A 141 TSNETVVPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISGLS 220 (501)
T ss_dssp ---------CCHHHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHTCCCTTCEEEECSCTTSHHHHH
T ss_pred cchhhccccCCcccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhhCCCccCEEEEeCcHHHHHHHH
Confidence 000000 011111223456789999999999999999999999999999999999999999999999999999999987
Q ss_pred HHHHHHHHcCCEEEEcCCcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccccEE
Q 013869 228 NALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRL 307 (435)
Q Consensus 228 ~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~ 307 (435)
. ++.++..|+++++.+.+++..+++. ++++++|++.++|+++..|++..... ..++|.
T Consensus 221 ~-~~~~l~~G~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~~~-----------~~~lr~ 278 (501)
T 3ipl_A 221 V-LLRAVIEGFTVRIVDKFNAEQILTM----------IKNERITHISLVPQTLNWLMQQGLHE-----------PYNLQK 278 (501)
T ss_dssp H-HHHHHHHTCEEEECSSCCHHHHHHH----------HHHSCCCEEEECHHHHHHHHHHTCCS-----------CTTCCE
T ss_pred H-HHHHHHcCceEEeCCCCCHHHHHHH----------HHHcCCcEEEchHHHHHHHHhcCCCC-----------cCcccE
Confidence 5 8899999999999999999999998 56699999999999999998753321 127999
Q ss_pred EEecCCCCCHHHHHHHHHHhCCcccccccCccccchhccCCC--CCCCCCccceecCCCeEEEecCCCCCCCCccceEEE
Q 013869 308 MMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLR--GARKAGTVGNPLPGVQVKIAEDESGSDAAGVGEICV 385 (435)
Q Consensus 308 i~~~G~~l~~~l~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~--~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~~Gel~v 385 (435)
+++||+++++++.+.+.+ +++++++.||+||+++.++.... ......++|+|+++++++|+|++ +++.|||++
T Consensus 279 i~~gG~~l~~~~~~~~~~-~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~----~~~~GEl~v 353 (501)
T 3ipl_A 279 ILLGGAKLSATMIETALQ-YNLPIYNSFGMTETCSQFLTATPEMLHARPDTVGMPSANVDVKIKNPN----KEGHGELMI 353 (501)
T ss_dssp EEECSSCCCHHHHHHHHH-TTCCEEEEEEEGGGTEEEEEECHHHHHHCTTCCBEECTTCEEEEESCC----SSCCEEEEE
T ss_pred EEEeCCCCCHHHHHHHHH-hCCCEeccccccccccceeecCccccccCCCCCCCCCCCcEEEEecCC----CCCccEEEE
Confidence 999999999999999988 59999999999998764442221 22466789999999999999976 345799999
Q ss_pred ecCCccccccCCchhcccccccCCccccCceEEEcCCccEEEecccccCC
Q 013869 386 KSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRKGIYF 435 (435)
Q Consensus 386 ~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~gR~~d~i 435 (435)
+|+.++.||+++++.+.. | .+|||+|||+|++|+||++++.||.||+|
T Consensus 354 ~g~~~~~gY~~~~~~t~~-~-~~g~~~TGDl~~~~~~G~l~~~GR~dd~i 401 (501)
T 3ipl_A 354 KGANVMNGYLYPTDLTGT-F-ENGYFNTGDIAEIDHEGYVMIYDRRKDLI 401 (501)
T ss_dssp ESTTSCSCCSBSTTCCCS-E-ETTEEEEEEEEEECTTSCEEEEEECCCCE
T ss_pred eccchhhhhCcChhhcch-h-cCCceecCCEEEEcCCCeEEEEccccceE
Confidence 999999999999999887 5 58999999999999999999999999986
No 28
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=100.00 E-value=2.3e-61 Score=487.66 Aligned_cols=396 Identities=21% Similarity=0.340 Sum_probs=323.8
Q ss_pred ChHHHHHHHhcccCCCeeEEEeC----CcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeC
Q 013869 1 MEVFKAAYKKGSMARDSVAIRAD----QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAK 76 (435)
Q Consensus 1 ~~i~~~~~~~~~~~p~~~al~~~----~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~ 76 (435)
+|+.+.|.++|+++||++|+++. ++++||+||.++++++|++|++. |+++||+|+++++
T Consensus 11 ~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~-----------------gv~~gd~V~i~~~ 73 (590)
T 3kxw_A 11 QSLVDVVRLRALHSPNKKSCTFLNKELEETMTYEQLDQHAKAIAATLQAE-----------------GAKPGDRVLLLFA 73 (590)
T ss_dssp SSHHHHHHHHHHHCTTSEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHT-----------------TCCTTCEEEEECC
T ss_pred ccHHHHHHHHHHhCCCCeEEEEEcCCeeEEEcHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEEcC
Confidence 57899999999999999999873 58999999999999999999994 9999999999999
Q ss_pred CCHHHHHHHHHHHHhCCeEEeCCCCCC---HHHHHHHHhcCCccEEEechhhHHHHHHHH-hccCCccccCCCCCCCCCc
Q 013869 77 PSFEFVAGVLGTWFSGCIAVPLALSYP---ESELLHVMHDSDISMVLSTEDYREVLQNVA-SKSGAKFSLIPPVPNVSSE 152 (435)
Q Consensus 77 ~~~~~~~~~lA~~~~G~~~v~l~~~~~---~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 152 (435)
|++++++++|||+++|++++|+++..+ .+++.++++.+++++++++.+....+.... ...+. ...+ ......
T Consensus 74 ~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~ 149 (590)
T 3kxw_A 74 PGLPLIQAFLGCLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPK-FLKI---PAIALE 149 (590)
T ss_dssp SSHHHHHHHHHHHHTTCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CCE-ETTE---EEEEGG
T ss_pred CchhHHHHHHHHHHhCcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhccc-cccc---ceeech
Confidence 999999999999999999999999884 468899999999999999998776544322 11110 0000 000000
Q ss_pred cccccchhhhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhccCCCCCeeEEeecchhhhHHHHHHHH
Q 013869 153 TTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLA 232 (435)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~ 232 (435)
................++++++|+|||||||.||+|.++|+++.+.+......+++.+.+++++++|++|..|+...++.
T Consensus 150 ~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~ 229 (590)
T 3kxw_A 150 SIELNRSSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFHMNDETIIFSWLPPHHDMGLIGCILT 229 (590)
T ss_dssp GCCGGGGGGCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHTTTHH
T ss_pred hccccccccCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhhCCCCcCeEEEecCCCcchhhHHHHHH
Confidence 00001111122345678999999999999999999999999999999999999999999999999999999998766899
Q ss_pred HHHcCCEEEEcCCc----chhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccccEEE
Q 013869 233 PLYAGATVEFMPKF----SVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLM 308 (435)
Q Consensus 233 ~l~~G~~~~~~~~~----~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~i 308 (435)
++..|+++++.+++ ++..+++. +.++++|++.++|.++..+++..... .....+++++|.+
T Consensus 230 ~l~~G~~~v~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~p~~~~~l~~~~~~~-----~~~~~~l~~lr~~ 294 (590)
T 3kxw_A 230 PIYGGIQAIMMSPFSFLQNPLSWLKH----------ITKYKATISGSPNFAYDYCVKRIREE-----KKEGLDLSSWVTA 294 (590)
T ss_dssp HHHHTCEEEECCHHHHHHCTHHHHHH----------HHHHTCSEEEECTHHHHHHHHHCCGG-----GGTTCCCTTCCEE
T ss_pred HHhcCceEEEeCHHHHHHCHHHHHHH----------HHHhCCeeecCChhHHHHHHHHhhhh-----hccCCCchhhHHH
Confidence 99999999999876 67777777 66699999999999999998754321 1234578999999
Q ss_pred EecCCCCCHHHHHHHHHHhC------CcccccccCccccchhccCCC---------------------------CCCCCC
Q 013869 309 MCGSSALPLPVMQQWETITG------HRLLERYGMTEFVMAISNPLR---------------------------GARKAG 355 (435)
Q Consensus 309 ~~~G~~l~~~l~~~~~~~~~------~~l~~~YG~tE~~~~~~~~~~---------------------------~~~~~~ 355 (435)
++||+++++++.+.|.+.|+ .++++.||+||++++++.... ......
T Consensus 295 ~~gg~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (590)
T 3kxw_A 295 FNGAEPVREETMEHFYQAFKEFGFRKEAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLV 374 (590)
T ss_dssp EECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSEEEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEE
T ss_pred hhCCCCCCHHHHHHHHHHHHHcCCCccccccccccccccceeecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEe
Confidence 99999999999999999883 379999999999876553211 112346
Q ss_pred ccceecCCCeEEEecCC-CCCCCCc-cceEEEecCCccccccCCchhccccccc------CC--ccccCceEEEcCCccE
Q 013869 356 TVGNPLPGVQVKIAEDE-SGSDAAG-VGEICVKSPSLFKEYWKLPKVTKDSFTA------DG--FFKTGDTGKQDEDGYY 425 (435)
Q Consensus 356 ~~G~p~~~~~~~i~d~~-~~~~~~~-~Gel~v~~~~~~~gy~~~~~~~~~~~~~------~g--~~~TGD~g~~~~dG~l 425 (435)
++|+|+++ ++|+|++ +..++.+ .|||+++|++++.||+++|+.|++.|.. +| ||+|||+|++| ||+|
T Consensus 375 ~~G~p~~~--v~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~l 451 (590)
T 3kxw_A 375 SSGNPIQE--VKIIDPDTLIPCDFDQVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENEL 451 (590)
T ss_dssp CCCEESSE--EEEECTTTCCBCCTTBCEEEEEESTTSCCCBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-TTEE
T ss_pred ccCCCCCC--eEEEcCCCCcCCCCCCEEEEEEeCCcccccccCChhHHHHHHhccccCCCCCCcEEecCcEEEEE-CCEE
Confidence 78999998 7888877 6666666 7999999999999999999999999864 24 99999999998 9999
Q ss_pred EEecccccCC
Q 013869 426 IILGRKGIYF 435 (435)
Q Consensus 426 ~~~gR~~d~i 435 (435)
+|.||+||+|
T Consensus 452 ~~~GR~dd~I 461 (590)
T 3kxw_A 452 YVTGRIKDLI 461 (590)
T ss_dssp EEEEESSCHH
T ss_pred EEEcCccceE
Confidence 9999999986
No 29
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=100.00 E-value=6.9e-60 Score=475.75 Aligned_cols=393 Identities=20% Similarity=0.288 Sum_probs=328.0
Q ss_pred hHHHHHHHhcccCCCeeEEEeC---CcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCC
Q 013869 2 EVFKAAYKKGSMARDSVAIRAD---QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPS 78 (435)
Q Consensus 2 ~i~~~~~~~~~~~p~~~al~~~---~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~ 78 (435)
|+.++|.+++.++|+.+++... ++++||+||.++++++|++|+++ |+++||+|+++++|+
T Consensus 22 tl~~~l~~~a~~~p~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~-----------------Gv~~gd~V~i~~~~~ 84 (576)
T 3gqw_A 22 TLVDALDYAALSSAGMNFYDRRCQLEDQLEYQTLKARAEAGAKRLLSL-----------------NLKKGDRVALIAETS 84 (576)
T ss_dssp SHHHHHHHHTTSSCEEEEECTTSCEEEEEEHHHHHHHHHHHHHHHHHT-----------------CCCTTCEEEEECCSS
T ss_pred cHHHHHHHHhhCCCCeEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEEcCCc
Confidence 6899999999999999998763 47999999999999999999994 999999999999999
Q ss_pred HHHHHHHHHHHHhCCeEEeCCCCCC-------HHHHHHHHhcCCccEEEechhhHHHHHHHHhccCCccccCCCCCCCCC
Q 013869 79 FEFVAGVLGTWFSGCIAVPLALSYP-------ESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSS 151 (435)
Q Consensus 79 ~~~~~~~lA~~~~G~~~v~l~~~~~-------~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (435)
+++++++|||+++|++++|+++.++ .+++.++++.+++++++++.+..+.+...............
T Consensus 85 ~~~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~------- 157 (576)
T 3gqw_A 85 SEFVEAFFACQYAGLVAVPLAIPMGVGQRDSWSAKLQGLLASCQPAAIITGDEWLPLVNAATHDNPELHVLSH------- 157 (576)
T ss_dssp HHHHHHHHHHHHTTCEEEEECCCSSSSSHHHHHHHHHHHHHHHCCSEEEECGGGHHHHHHHGGGCTTCEEEEH-------
T ss_pred HHHHHHHHHHHHhCCeEeecCCCCcccchhhHHHHHHHHHHhcCCCEEEecHHHHHHHHHhhccCCcceecch-------
Confidence 9999999999999999999999998 78999999999999999999988877665443322110000
Q ss_pred ccccccchhhhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHh-ccCCCCCeeEEeecchhhhHHHHHH
Q 013869 152 ETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEA-WEYTSADQFLHCLPLHHVHGLFNAL 230 (435)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~-~~~~~~~~~l~~~pl~~~~g~~~~~ 230 (435)
.................++++++++|||||||.||+|.++|+++.+++...... +++.+++++++.+|++|..+++..+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~ 237 (576)
T 3gqw_A 158 AWFKALPEADVALQRPVPNDIAYLQYTSGSTRFPRGVIITHREVMANLRAISHDGIKLRPGDRCVSWLPFYHDMGLVGFL 237 (576)
T ss_dssp HHHHTSCCCCCCCCCCCTTSEEEEECTTSCSSSCCCEEEEHHHHHHHHHHHHHTTSCCCTTCCEEECCCTTSHHHHHHHT
T ss_pred hhhhcccccccccCCCCCCCeEEEEeCCCCCCCCceEEeeHHHHHHHHHHhhhcccCCCCcceEEEcCCccccccHHHHH
Confidence 000000000111224467999999999999999999999999999988887665 7899999999999999999997778
Q ss_pred HHHHHcCCEEEEcCC----cchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccccE
Q 013869 231 LAPLYAGATVEFMPK----FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLR 306 (435)
Q Consensus 231 ~~~l~~G~~~~~~~~----~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~lr 306 (435)
+.++..|+++++.+. +++..+++. ++++++|++.++|+++..+.+.... ......+++++|
T Consensus 238 ~~~l~~g~~~~~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~p~~~~~l~~~~~~-----~~~~~~~l~~lr 302 (576)
T 3gqw_A 238 LTPVATQLSVDYLRTQDFAMRPLQWLKL----------ISKNRGTVSVAPPFGYELCQRRVNE-----KDLAELDLSCWR 302 (576)
T ss_dssp HHHHHTTCCEEECCHHHHHHCTTHHHHH----------HHHTTCCEEEECHHHHHHHHHSCCH-----HHHTTCCCTTCC
T ss_pred HHHHhcCceEEEcchhHhhhCHHHHHHH----------HHHhCCeEEEcCHHHHHHHHHHhcc-----cccccCChhhhH
Confidence 889999999999875 577777777 6669999999999999988765432 233455789999
Q ss_pred EEEecCCCCCHHHHHHHHHHh------CCcccccccCccccchhccCCCCC----------------------------C
Q 013869 307 LMMCGSSALPLPVMQQWETIT------GHRLLERYGMTEFVMAISNPLRGA----------------------------R 352 (435)
Q Consensus 307 ~i~~~G~~l~~~l~~~~~~~~------~~~l~~~YG~tE~~~~~~~~~~~~----------------------------~ 352 (435)
.+++||+++++++.++|.+.+ +.++++.||+||++++++...... .
T Consensus 303 ~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 382 (576)
T 3gqw_A 303 VAGIGAEPISAEQLHQFAECFRQVNFDNKTFMPCYGLAENALAVSFSDEASGVVVNEVDRDILEYQGKAVAPGAETRAVS 382 (576)
T ss_dssp EEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSEEEECCTTCCCCEEEEEHHHHHHHCBCCCCCTTCCCEE
T ss_pred hhhccCccCCHHHHHHHHHHHhhcCCCcccccccCCcccccceeecccccCCccccccchhhhcccCcccccCccccCcc
Confidence 999999999999999999998 678999999999987655322110 0
Q ss_pred CCCccceecCCCeEEEecCCCCCCCCc-cceEEEecCCccccccCCchhcccccccCCccccCceEEEcCCccEEEeccc
Q 013869 353 KAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRK 431 (435)
Q Consensus 353 ~~~~~G~p~~~~~~~i~d~~~~~~~~~-~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~gR~ 431 (435)
...++|+|+++++++|+|++++.++.+ .|||+++|++++.||+++++.+...+ .+|||+|||+|++ +||++++.||+
T Consensus 383 ~~~~~G~p~~~~~~~i~d~~g~~~~~g~~GEl~v~g~~~~~gY~~~~~~~~~~~-~~g~~~TGDl~~~-~dG~l~~~GR~ 460 (576)
T 3gqw_A 383 TFVNCGKALPEHGIEIRNEAGMPVAERVVGHICISGPSLMSGYFGDQVSQDEIA-ATGWLDTGDLGYL-LDGYLYVTGRI 460 (576)
T ss_dssp EEEBCCEECTTCEEEEECTTSCBCCTTBCEEEEEESTTSCCCBTTCHHHHHHHH-HHSCEEEEEEEEE-ETTEEEEEEET
T ss_pred ceeecCCcCCCCeEEEECCCCCCCCCCCeEEEEEeCccccccccCCcccccccc-CCCeeeccceEEE-ECCEEEEEecC
Confidence 112789999999999999999988777 79999999999999999998777655 6899999999999 79999999999
Q ss_pred ccCC
Q 013869 432 GIYF 435 (435)
Q Consensus 432 ~d~i 435 (435)
||+|
T Consensus 461 dd~i 464 (576)
T 3gqw_A 461 KDLI 464 (576)
T ss_dssp TTCE
T ss_pred cceE
Confidence 9986
No 30
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=100.00 E-value=6.8e-60 Score=473.80 Aligned_cols=388 Identities=18% Similarity=0.228 Sum_probs=305.2
Q ss_pred ChHHHHHHHhcccCCCeeEEEeCC----------cccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCe
Q 013869 1 MEVFKAAYKKGSMARDSVAIRADQ----------KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGAR 70 (435)
Q Consensus 1 ~~i~~~~~~~~~~~p~~~al~~~~----------~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~ 70 (435)
||+.+.|.++|+++||++|+++.+ +++||+||.++++++|++|.+. |+ +||+
T Consensus 20 ~tl~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~-----------------g~-~gd~ 81 (562)
T 3ite_A 20 VPPSHYIETWAKTHPEWKAVEVATGFLGSQKIVTEDWTYKKLNETANQVANLIIHA-----------------SL-HGRA 81 (562)
T ss_dssp CCTTHHHHHHHHHCTTSEEEEEEECC-----CEEEEEEHHHHHHHHHHHHHHHHHT-----------------TC-SSCE
T ss_pred CCHHHHHHHHHHHCCCchhhhcccccccccccccCCCCHHHHHHHHHHHHHHHHhc-----------------CC-CCCE
Confidence 688999999999999999999642 7899999999999999999994 88 7999
Q ss_pred EEEEeCCCHHHHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHHhccCCccccCCCCCCCC
Q 013869 71 IGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVS 150 (435)
Q Consensus 71 V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (435)
|+++++|++++++++|||+++|++++|+++.++.+++.++++.++++++|++.+....+ ........+. .....
T Consensus 82 V~i~~~n~~~~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~-----~~~~~~~~~~-~~~~~ 155 (562)
T 3ite_A 82 IAVSLDRSLIAFAIIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGV-----ELPPETKVLD-TKNQS 155 (562)
T ss_dssp EEEECCSCHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTC-----CCCTTCEEEE-TTCHH
T ss_pred EEEEeCCCHHHHHHHHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEcccccccc-----ccCccceeec-ccchh
Confidence 99999999999999999999999999999999999999999999999999987543211 0000000000 00000
Q ss_pred CccccccchhhhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHh--------ccCCCCCeeEEeecchh
Q 013869 151 SETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEA--------WEYTSADQFLHCLPLHH 222 (435)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~--------~~~~~~~~~l~~~pl~~ 222 (435)
..................++++++|+|||||||.||+|.++|+++.+........ ..+...+++++..|++|
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (562)
T 3ite_A 156 FIENLSTQDTSDILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAF 235 (562)
T ss_dssp HHHHHHHSCCSCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTS
T ss_pred hhhhcccccccccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchh
Confidence 0000000001111234457888999999999999999999999998887766543 34678899999999999
Q ss_pred hhHHHHHHHHHHHcCCEEEEcCCcch-hHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhh
Q 013869 223 VHGLFNALLAPLYAGATVEFMPKFSV-RGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASA 301 (435)
Q Consensus 223 ~~g~~~~~~~~l~~G~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~ 301 (435)
..++. .++.++..|+++++.+.+.. ..+++. ++++++|++.++|++++.+... ..+
T Consensus 236 ~~~~~-~~~~~l~~g~~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~l~~~~~~------------~~~ 292 (562)
T 3ite_A 236 DVHIG-EMFLAWRFGLCAVTGERLSMLDDLPRT----------FRELGVTHAGIVPSLLDQTGLV------------PED 292 (562)
T ss_dssp THHHH-HHHHHHHTTCEEEECCHHHHHHSHHHH----------HHHTTCCEEEECHHHHHHHTCC------------GGG
T ss_pred hhhHH-HHHHHHhcccEEEecchhhCHHHHHHH----------HHHcCCCEEEcCHHHHhhcccC------------ccc
Confidence 88875 58889999999999887553 445555 6669999999999988776432 236
Q ss_pred ccccEEEEecCCCCCHHHHHHHHHHhCCcccccccCccccchhcc-CCCCCCCCCccceecCCCeEEEecCC-CCCCCCc
Q 013869 302 AKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISN-PLRGARKAGTVGNPLPGVQVKIAEDE-SGSDAAG 379 (435)
Q Consensus 302 l~~lr~i~~~G~~l~~~l~~~~~~~~~~~l~~~YG~tE~~~~~~~-~~~~~~~~~~~G~p~~~~~~~i~d~~-~~~~~~~ 379 (435)
++++|.+++||+++++++.+.|.+.+++++++.||+||+++.++. .........++|+|+++++++|+|++ +..++.+
T Consensus 293 ~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g 372 (562)
T 3ite_A 293 APHLVYLGVGGEKMTPRTQQIWSSSDRVALVNVYGPTEVTIGCSAGRILPDSDTRCIGHPLGDSVAHVLAPGSNEHVKKG 372 (562)
T ss_dssp STTCCEEEEESSCCCHHHHHHHTTCSSCEEEEEECCGGGCSCSEEEECCTTSCTTEEEEECTTCEEEEECTTSSCBCCTT
T ss_pred cCceEEEEEecCCCCHHHHHHHhhCCCcEEEEeeccchheeeeeeeeecCCCCCccccccCCCCeEEEEeCCCCCCCCCC
Confidence 789999999999999999999999889999999999999865553 22334566789999999999999965 4546655
Q ss_pred -cceEEEecCCccccccCCchhcccccc-cCCccccCceEEEcCCccEEEecccccCC
Q 013869 380 -VGEICVKSPSLFKEYWKLPKVTKDSFT-ADGFFKTGDTGKQDEDGYYIILGRKGIYF 435 (435)
Q Consensus 380 -~Gel~v~~~~~~~gy~~~~~~~~~~~~-~~g~~~TGD~g~~~~dG~l~~~gR~~d~i 435 (435)
.|||+++|++++.||+++|+.+...+. +++||+|||+|++|+||+|+|.||+||+|
T Consensus 373 ~~GEl~v~g~~v~~GY~~~p~~t~~~~~~g~~w~~TGDlg~~d~dG~l~~~GR~dd~I 430 (562)
T 3ite_A 373 MAGELVIEGSLVANGYLNRPDAKGFCDINGRKMYRTGDIVRMDADSSILFLGRKDEQV 430 (562)
T ss_dssp SCEEEEEESTTSCCEESSCTTCCSEEEETTEEEEEEEEEEEECTTSCEEEEEEC----
T ss_pred CceEEEEeccccchhhCCCccccccccCCCCEEEecCCEEEEcCCCeEEEEccccCEE
Confidence 799999999999999999998887653 23499999999999999999999999987
No 31
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=100.00 E-value=1.1e-58 Score=504.25 Aligned_cols=385 Identities=23% Similarity=0.349 Sum_probs=320.9
Q ss_pred hHHHHHHHhcccCCCeeEEEeCCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCCHHH
Q 013869 2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF 81 (435)
Q Consensus 2 ~i~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~~~~ 81 (435)
+++++|.++++++||++|+++.++++||+||.++++++|++|+++ |+++|++|+|+++|++++
T Consensus 465 ~l~~~~~~~~~~~p~~~Av~~~~~~lTY~eL~~~a~~lA~~L~~~-----------------Gv~~g~~V~i~~~~s~~~ 527 (1304)
T 2vsq_A 465 PLTYWFKEAVNANPDAPALTYSGQTLSYRELDEEANRIARRLQKH-----------------GAGKGSVVALYTKRSLEL 527 (1304)
T ss_dssp CHHHHHHHHHHHCTTSEEEESSSCEEEHHHHHHHHHHHHHHHHHT-----------------TCCTTCEEEECCCSSHHH
T ss_pred CHHHHHHHHHHhCCCCeEEEECCeeEcHHHHHHHHHHHHHHHHhc-----------------CcCCcCEEEEEeCCCHHH
Confidence 588999999999999999999999999999999999999999995 999999999999999999
Q ss_pred HHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHHhccCCccccCCCCCCCCCccccccchhh
Q 013869 82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQA 161 (435)
Q Consensus 82 ~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (435)
++++|||+++|+++||++|.++.+++.++++.+++++++++.+....+.... .......+. .. ... .....
T Consensus 528 vv~~lailkaG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~~--~~~~~~~~~---~~---~~~-~~~~~ 598 (1304)
T 2vsq_A 528 VIGILGVLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAELP--YTGTTLFID---DQ---TRF-EEQAS 598 (1304)
T ss_dssp HHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTSTTCC--CCSEEEESS---CG---GGG-GSCSS
T ss_pred HHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhhccC--CCCcEEEec---cc---ccc-ccccC
Confidence 9999999999999999999999999999999999999999986533211100 000001110 00 000 00111
Q ss_pred hhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhccCCCCCeeEEeecchhhhHHHHHHHHHHHcCCEEE
Q 013869 162 EKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVE 241 (435)
Q Consensus 162 ~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~~ 241 (435)
.+.....+++++|++|||||||.||||.++|+++.+. .+....+++.+.++++...|++|..+.+ .++.++..|++++
T Consensus 599 ~~~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~~~~~~~d~~l~~~~~~fd~~~~-~~~~~l~~G~~l~ 676 (1304)
T 2vsq_A 599 DPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGL-VKHVDYMAFSDQDTFLSVSNYAFDAFTF-DFYASMLNAARLI 676 (1304)
T ss_dssp CCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHH-HSSCCSSCCCTTCEEEECSCTTSTHHHH-HHHHHHTTTCEEE
T ss_pred CCCCCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHH-HHHHHhcCCCCCCEEEEECCccHHHHHH-HHHHHHHcCCEEE
Confidence 1223456899999999999999999999999998765 3444556788999999999999988875 6999999999999
Q ss_pred EcCC---cchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccccEEEEecCCCCCHH
Q 013869 242 FMPK---FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLP 318 (435)
Q Consensus 242 ~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~i~~~G~~l~~~ 318 (435)
+.+. .++..+.+. +.++++|++.++|+++..+.+.. ...++++|.+++||++++.+
T Consensus 677 ~~~~~~~~~~~~l~~~----------i~~~~vt~~~~~p~~~~~l~~~~-----------~~~~~~lr~~~~gGe~l~~~ 735 (1304)
T 2vsq_A 677 IADEHTLLDTERLTDL----------ILQENVNVMFATTALFNLLTDAG-----------EDWMKGLRCILFGGERASVP 735 (1304)
T ss_dssp ECCGGGTTCHHHHHHH----------HHHHTCCEEEEEHHHHHHHHHHC-----------SHHHHTCSEEEEESSCCCHH
T ss_pred ECChhhcCCHHHHHHH----------HHHcCCcEEEccHHHHHHHHhhc-----------hhcCCCccEEEEecCCCCHH
Confidence 9985 567777777 56689999999999999997631 22467899999999999999
Q ss_pred HHHHHHHHhC-CcccccccCccccchhccCC----CCCCCCCccceecCCCeEEEecCCCCCCCCc-cceEEEecCCccc
Q 013869 319 VMQQWETITG-HRLLERYGMTEFVMAISNPL----RGARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSLFK 392 (435)
Q Consensus 319 l~~~~~~~~~-~~l~~~YG~tE~~~~~~~~~----~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~-~Gel~v~~~~~~~ 392 (435)
+.++|.+.++ .+++|.||+||+++.++... .......++|+|++|++++|+|++++.++.+ .|||+|+|+++++
T Consensus 736 ~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~p~G~~GEl~i~G~~v~~ 815 (1304)
T 2vsq_A 736 HVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDSISSLPIGKPISNASVYILNEQSQLQPFGAVGELCISGMGVSK 815 (1304)
T ss_dssp HHHHHHHHHCTTCEEEEECCGGGSSCSEEEECCCCCSSCSSCCCBEECTTEEEEEECTTSCBCCTTCCEEEEEEETTCCC
T ss_pred HHHHHHHhCCCCEEEEeEChhHHhHHheeeeccCccccCCCCCCceeeCCCEEEEECCCcCCCCCCCceEEEEeccccCc
Confidence 9999999884 68999999999987655321 1223456899999999999999999998888 7999999999999
Q ss_pred cccCCchhccccccc------CCccccCceEEEcCCccEEEecccccCC
Q 013869 393 EYWKLPKVTKDSFTA------DGFFKTGDTGKQDEDGYYIILGRKGIYF 435 (435)
Q Consensus 393 gy~~~~~~~~~~~~~------~g~~~TGD~g~~~~dG~l~~~gR~~d~i 435 (435)
||+++|+.|+++|.. ++||+|||+|++++||.|+|+||+||+|
T Consensus 816 GY~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~d~qv 864 (1304)
T 2vsq_A 816 GYVNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQV 864 (1304)
T ss_dssp CBTTCHHHHHHHEEECTTSTTCEEEEEEEEEEECTTSCEEEEEEGGGEE
T ss_pred cccCCcccchhhhccCCCCCCCeeEecCCeEEEcCCCeEEEEcCCCCEE
Confidence 999999999999853 4599999999999999999999999975
No 32
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=100.00 E-value=3.1e-38 Score=297.60 Aligned_cols=218 Identities=18% Similarity=0.255 Sum_probs=188.2
Q ss_pred CCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhccCCCCCeeEEeecchhhhHHHHHHHHHHHcCCEEEEcCCcch
Q 013869 169 GEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSV 248 (435)
Q Consensus 169 ~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~~~~~~~~~ 248 (435)
.++++||+|||||||.||+|.+||+++.+++......+++.++|++++++|++|..|+. .++.++..|+++++.++..
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~-~~~~~l~~g~~~~~~~~~~- 113 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKALSLGPGTRALVCLNVGYIAGLM-MLVRGMELDWELTVTEPTA- 113 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHH-HHHHHHHHTCEEEEECCCS-
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEECChHHHHHHH-HHHHHHHhCcEEEecCccc-
Confidence 48999999999999999999999999999999999999999999999999999999987 4888999999999886531
Q ss_pred hHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccccEEEEecCCCCCHHHHHHHHHHhC
Q 013869 249 RGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITG 328 (435)
Q Consensus 249 ~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~i~~~G~~l~~~l~~~~~~~~~ 328 (435)
+.++. ++++++|++.++|+++..+++... ...+++++|.+++||+++++++.+++++ ++
T Consensus 114 -~~~~~----------i~~~~~t~~~~~P~~l~~ll~~~~---------~~~~l~~lr~v~~gG~~l~~~~~~~~~~-~~ 172 (358)
T 4gs5_A 114 -NPLAG----------LDHADFDFVAMVPMQLQSILENSA---------TSGQVDRLGKVLLGGAPVNHALAMQISD-LA 172 (358)
T ss_dssp -CTTTT----------CSSCCCSEEEECHHHHHHHHHCTT---------TGGGGGGGCSEEECSSCCCHHHHHHHHT-CS
T ss_pred -cHHHH----------HHHhCCeEEEcChHHHHHhhcccc---------ccccCCcceEEEEcccCCCchheecccc-cC
Confidence 22222 788999999999999999987532 2346899999999999999999999987 48
Q ss_pred CcccccccCccccchhccCCCCCCCCCccceecCCCeEEEecCCCCCCCCccceEEEecCCccccccCCchhcccccccC
Q 013869 329 HRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAGVGEICVKSPSLFKEYWKLPKVTKDSFTAD 408 (435)
Q Consensus 329 ~~l~~~YG~tE~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~ 408 (435)
+++++.||+||++..++.........+++|.+.||+++.+.+. ||++++|+.. .+
T Consensus 173 ~~~~~~YG~TEt~~~~~~~~~~~~~~g~~~~~~pgv~~~~~~~---------Gel~~~g~~~----------------~~ 227 (358)
T 4gs5_A 173 MPVYQSYGMTETVSHVALKALNGPEASELYVFLPGIQYGVDER---------GCLHISGAVT----------------NG 227 (358)
T ss_dssp SCEEEEEECGGGSSEEEEEECSSTTCCSCEEECTTCEEEECTT---------SEEEEESGGG----------------TT
T ss_pred ceEEeccccccccceeecccccccccceeeccCCCeEEEecCc---------CceEEecccc----------------cC
Confidence 9999999999998766654444566788999999999998765 9999998642 47
Q ss_pred CccccCceEEEcCCccEEEecccccCC
Q 013869 409 GFFKTGDTGKQDEDGYYIILGRKGIYF 435 (435)
Q Consensus 409 g~~~TGD~g~~~~dG~l~~~gR~~d~i 435 (435)
|||+|||+|++|+|| ++++||+||+|
T Consensus 228 g~~~TGDlg~~d~~g-~~~~GR~dd~I 253 (358)
T 4gs5_A 228 QTVQTNDLVEIHGNA-FQWIGRADNVI 253 (358)
T ss_dssp CCEEEEEEEEECSSE-EEEEEEGGGEE
T ss_pred cceecCCccccccCc-eEEcccccCeE
Confidence 899999999999988 66779999986
No 33
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=100.00 E-value=1.3e-35 Score=288.31 Aligned_cols=237 Identities=16% Similarity=0.169 Sum_probs=195.0
Q ss_pred CCC-CCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHH---hccCCCCCeeEEeecchhhhHHHHHHHHHHHcCCEEEE
Q 013869 167 QRG-EDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTE---AWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEF 242 (435)
Q Consensus 167 ~~~-~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~---~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~~~ 242 (435)
..+ +++++++|||||||.||+|.++|+++.+....... ..++.++++++...|++|..+.+..++.++..|+++++
T Consensus 82 ~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~ 161 (436)
T 3qov_A 82 GDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVP 161 (436)
T ss_dssp SCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEEC
T ss_pred CCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEe
Confidence 445 88999999999999999999999999777666543 45889999999999998777766678899999999999
Q ss_pred cCCcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccccEEEEecCCCCCHHHHHH
Q 013869 243 MPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQ 322 (435)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~i~~~G~~l~~~l~~~ 322 (435)
.+.+++..+++. +.++++|++.++|+++..|++..+... ....++++|.+++||+++++++.+.
T Consensus 162 ~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~~~~------~~~~~~~lr~i~~gGe~l~~~~~~~ 225 (436)
T 3qov_A 162 AAAGNSKRQIKF----------ISDFKTTALHAIPSYAIRLAEVFQEEG------IDPRETTLKTLVIGAEPHTDEQRRK 225 (436)
T ss_dssp CCSCCHHHHHHH----------HHHHTCCEEECCHHHHHHHHHHHHHTT------CCTTSSSCCEEEEESSCCCHHHHHH
T ss_pred CCCCCHHHHHHH----------HHHHCCCEEEECHHHHHHHHHHHHHcC------CCcccCCccEEEEeCCcCCHHHHHH
Confidence 999999888888 566899999999999999988643211 1113789999999999999999999
Q ss_pred HHHHhCCcccccccCccccch-hccCCCCCCCCCccceecCCCeEEEec-CCCCCCCCc-cceEEEecCCccccccCCch
Q 013869 323 WETITGHRLLERYGMTEFVMA-ISNPLRGARKAGTVGNPLPGVQVKIAE-DESGSDAAG-VGEICVKSPSLFKEYWKLPK 399 (435)
Q Consensus 323 ~~~~~~~~l~~~YG~tE~~~~-~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~~~~~~~~-~Gel~v~~~~~~~gy~~~~~ 399 (435)
|.+.|++++++.||+||+++. +.... ......+.|.++++++|+| ++++.++.+ .|||+++|..
T Consensus 226 ~~~~~g~~v~~~YG~TE~~~~~~~~~~---~~~~g~~~~~~~~~v~i~d~~~g~~~~~g~~Gel~v~~~~---------- 292 (436)
T 3qov_A 226 IERMLNVKAYNSFGMTEMNGPGVAFEC---QEQNGMHFWEDCYLVEIIDPETGEPVPEGEIGELVLTTLD---------- 292 (436)
T ss_dssp HHHHHTSEEEEEEEEGGGTEEEEEEEC---TTCSSEEECTTTEEEEEECTTTCSBCSTTCCEEEEEEESS----------
T ss_pred HHHHhCccEEecCcchhhcCCeeEEec---CCCCeeEEccCceEEEEEECCCCCCCCCCCceEEEEeccC----------
Confidence 999999999999999999543 33221 1223477888899999999 678777776 7999999842
Q ss_pred hcccccccCCccccCceEEEcCCc------c---EEEecccccCC
Q 013869 400 VTKDSFTADGFFKTGDTGKQDEDG------Y---YIILGRKGIYF 435 (435)
Q Consensus 400 ~~~~~~~~~g~~~TGD~g~~~~dG------~---l~~~gR~~d~i 435 (435)
...+ ..+||+|||+|+++++| + +++.||.||+|
T Consensus 293 --~~~~-~~~~y~TGDl~~~~~~gc~cG~~~~~il~i~GR~dd~i 334 (436)
T 3qov_A 293 --REMM-PLIRYRTRDLTRILPGKCPCGRTHLRIDRIKGRSDDMF 334 (436)
T ss_dssp --CCSS-CCCSEEEEEEECEECSCCTTCCCSCEECCCCCBSSSCE
T ss_pred --cCCc-eEEEEEcCCEEEEcCCCCCCCCCccccCcccCccCCEE
Confidence 2333 47899999999999998 6 69999999986
No 34
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=100.00 E-value=2.6e-35 Score=286.71 Aligned_cols=237 Identities=19% Similarity=0.117 Sum_probs=190.7
Q ss_pred CCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHH---hccCCCCCeeEEeecch-hhhHHHHHHHHHHHcCCEEE
Q 013869 166 GQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTE---AWEYTSADQFLHCLPLH-HVHGLFNALLAPLYAGATVE 241 (435)
Q Consensus 166 ~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~---~~~~~~~~~~l~~~pl~-~~~g~~~~~~~~l~~G~~~~ 241 (435)
...++++++++|||||||.||+|.++|+++......... .+++.++++++...|++ |..++. .++.++..|++++
T Consensus 88 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~-~~~~~~~~G~~~~ 166 (443)
T 2y4o_A 88 AVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLG-IHYGAERLGCMVV 166 (443)
T ss_dssp SSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHH-HHHHHHHHTCEEE
T ss_pred CCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHH-HHHHHHHcCCEEE
Confidence 446789999999999999999999999998776555443 56889999999999994 555554 5888999999999
Q ss_pred EcCCcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccccEEEEecCCCCCHHHHH
Q 013869 242 FMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQ 321 (435)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~i~~~G~~l~~~l~~ 321 (435)
+.+.+++..+++. +.++++|++.++|+++..|++..+... ....++++|.+++||+++++++++
T Consensus 167 ~~~~~~~~~~~~~----------i~~~~~t~l~~~Ps~~~~l~~~~~~~~------~~~~~~~lr~i~~gGe~l~~~~~~ 230 (443)
T 2y4o_A 167 PMSGGQTEKQVQL----------IRDFEPKIILVTPSYMLNLIDEMVRQG------MDPAESSLKIGIFGAEPWTQALRN 230 (443)
T ss_dssp CCCSCCHHHHHHH----------HHHHCCSEEEECHHHHHHHHHHHHHTT------CCGGGSSCCEEEEESSCCCHHHHH
T ss_pred ECCCCCHHHHHHH----------HHHhCCcEEEECHHHHHHHHHHHHHcC------CCcccCCceEEEECCCcCCHHHHH
Confidence 9998898888888 566899999999999999987533211 011358999999999999999999
Q ss_pred HHHHHhCCcccccccCccc-cc-hhccCCCCCCCCCccceecCCCeEEEecC-CCCCCCCc-cceEEEecCCccccccCC
Q 013869 322 QWETITGHRLLERYGMTEF-VM-AISNPLRGARKAGTVGNPLPGVQVKIAED-ESGSDAAG-VGEICVKSPSLFKEYWKL 397 (435)
Q Consensus 322 ~~~~~~~~~l~~~YG~tE~-~~-~~~~~~~~~~~~~~~G~p~~~~~~~i~d~-~~~~~~~~-~Gel~v~~~~~~~gy~~~ 397 (435)
.|++.|++++++.||+||+ +. +...... .....+.|.++++++|+|+ +++.++.+ .|||+++|.
T Consensus 231 ~~~~~~g~~v~~~YG~TE~~g~~~~~~~~~---~~~g~~~~~~~~~~~i~d~~~g~~~~~G~~Gel~v~~~--------- 298 (443)
T 2y4o_A 231 EVETRVGIDALDIYGLSEVMGPGVACECVE---TKDGPVIWEDHFYPEIIDPVTGEVLPDGSQGELVFTSL--------- 298 (443)
T ss_dssp HHHHHHTCEEEEEEEETTTTEEEEEEECTT---TCCSEEECTTTEEEEEECTTTCCBCCTTCCEEEEEEES---------
T ss_pred HHHHHhCcCEEeccCchhhcCCeEEeccCC---CCCceEEccCCeEEEEEcCCCCCCCCCCCceEEEEeCC---------
Confidence 9999999999999999997 43 3322211 1113566778999999995 57777766 799999973
Q ss_pred chhcccccccCCccccCceEEEcCC-ccE-----EEecccccCC
Q 013869 398 PKVTKDSFTADGFFKTGDTGKQDED-GYY-----IILGRKGIYF 435 (435)
Q Consensus 398 ~~~~~~~~~~~g~~~TGD~g~~~~d-G~l-----~~~gR~~d~i 435 (435)
+.+.| ..+||+|||+|++++| |++ ++.||.||+|
T Consensus 299 ---t~~~~-p~~~y~TGDl~~~~~~cG~~~~~l~~i~GR~~d~i 338 (443)
T 2y4o_A 299 ---TKEAM-PVIRYRTRDLTALLPPTARAMRRLAKITGRSDDML 338 (443)
T ss_dssp ---SCSSS-CCSSEEEEEEECEECCSSSSSCEECCCCEESSCCE
T ss_pred ---CcccC-hhheeecCCEEEEcCCCCCCccccCccccccCCeE
Confidence 22334 4789999999999999 987 8999999986
No 35
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=100.00 E-value=6.6e-34 Score=276.29 Aligned_cols=237 Identities=19% Similarity=0.109 Sum_probs=191.0
Q ss_pred CCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHH---HhccCCCCCeeEEeecc-hhhhHHHHHHHHHHHcCCEEE
Q 013869 166 GQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLT---EAWEYTSADQFLHCLPL-HHVHGLFNALLAPLYAGATVE 241 (435)
Q Consensus 166 ~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~---~~~~~~~~~~~l~~~pl-~~~~g~~~~~~~~l~~G~~~~ 241 (435)
...++++++++|||||||.||+|.++|+++........ ..+++.++|+++...|+ +|..++. .++.++..|++++
T Consensus 86 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~G~~~~ 164 (437)
T 2y27_A 86 AVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLG-AHYGAERAGLTVI 164 (437)
T ss_dssp SSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHH-HHHHHHHTTCEEE
T ss_pred cCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchH-HHHHHHHcCCEEE
Confidence 34668999999999999999999999999877665443 35678899999999998 5666664 5888999999999
Q ss_pred EcCCcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccccEEEEecCCCCCHHHHH
Q 013869 242 FMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQ 321 (435)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~i~~~G~~l~~~l~~ 321 (435)
+.+.+++..+++. +.++++|++.++|+++..|++..+... ....++++|.+++||+++++++.+
T Consensus 165 ~~~~~~~~~~~~~----------i~~~~~t~l~~~Ps~~~~l~~~~~~~~------~~~~~~~lr~i~~gGe~l~~~~~~ 228 (437)
T 2y27_A 165 PFGGGQTEKQVQL----------IQDFRPDIIMVTPSYMLSIADEIERQG------LDPVQSSLRIGIFGAEPWTNDMRV 228 (437)
T ss_dssp CCCSCCHHHHHHH----------HHHHCCSEEEECHHHHHHHHHHHHHTT------CCGGGSSCCEEEEESSCCCHHHHH
T ss_pred eCCCCCHHHHHHH----------HHHhCCCEEEECHHHHHHHHHHHHHcC------CCcccCCeeEEEEcCccCCHHHHH
Confidence 9998888888888 566899999999999999987533211 011358899999999999999999
Q ss_pred HHHHHhCCcccccccCccc-cc-hhccCCCCCCCCCccceecCCCeEEEecC-CCCCCCCc-cceEEEecCCccccccCC
Q 013869 322 QWETITGHRLLERYGMTEF-VM-AISNPLRGARKAGTVGNPLPGVQVKIAED-ESGSDAAG-VGEICVKSPSLFKEYWKL 397 (435)
Q Consensus 322 ~~~~~~~~~l~~~YG~tE~-~~-~~~~~~~~~~~~~~~G~p~~~~~~~i~d~-~~~~~~~~-~Gel~v~~~~~~~gy~~~ 397 (435)
.|++.|++++++.||+||+ +. ++..... .....+.|.+++.++|+|+ +++.++.+ .|||+++|.
T Consensus 229 ~~~~~~g~~v~~~YG~TE~~g~~~~~~~~~---~~~g~~~~~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~--------- 296 (437)
T 2y27_A 229 AIEQRMGIDAVDIYGLSEVMGPGVASECVE---TKDGPTIWEDHFYPEIIDPETGEVLPDGELGELVFTSL--------- 296 (437)
T ss_dssp HHHHHHTSEEEEEEEETTTTEEEEEECCTT---TCSSCEECTTTEEEEEECTTTCCBCCTTCCEEEEEEES---------
T ss_pred HHHHHHCcCEEecCCchhhcCCeeEEecCC---CCCceeEccCceEEEEEcCCCCCCCCCCCccEEEEecC---------
Confidence 9999999999999999997 43 3332221 1123667778999999995 47777766 799999983
Q ss_pred chhcccccccCCccccCceEEEcC-CccE-----EEecccccCC
Q 013869 398 PKVTKDSFTADGFFKTGDTGKQDE-DGYY-----IILGRKGIYF 435 (435)
Q Consensus 398 ~~~~~~~~~~~g~~~TGD~g~~~~-dG~l-----~~~gR~~d~i 435 (435)
+.+.| .++||+|||+|++++ ||++ ++.||.||+|
T Consensus 297 ---t~~~~-~~~~y~TGDl~~~~~~~G~~~~~i~~i~GR~~d~i 336 (437)
T 2y27_A 297 ---TKEAL-PIIRYRTRDLTRLLPGTARTMRRMEKITGRSDDMM 336 (437)
T ss_dssp ---SCSSS-CCCSEEEEEEECEECCSSSSSCEECCCCEEGGGCE
T ss_pred ---CcCCc-hhheeecCCEEEEeCCCCCCccccCccccccCCeE
Confidence 22334 478999999999999 6986 8999999986
No 36
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=99.96 E-value=2.3e-29 Score=238.81 Aligned_cols=198 Identities=19% Similarity=0.229 Sum_probs=161.2
Q ss_pred CCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHH---HhccCCCCCeeEEeecc-hhhhHHHHHHHHHHHcCCEEE
Q 013869 166 GQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLT---EAWEYTSADQFLHCLPL-HHVHGLFNALLAPLYAGATVE 241 (435)
Q Consensus 166 ~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~---~~~~~~~~~~~l~~~pl-~~~~g~~~~~~~~l~~G~~~~ 241 (435)
...++++++++|||||||.||+|.++|+++.....+.. ...++.+++++++..|+ +|..++.. .+.++..|+ ++
T Consensus 87 ~~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~-~~~~~~~G~-~v 164 (369)
T 3hgu_A 87 GLPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAIN-KERALRLGG-MF 164 (369)
T ss_dssp TSCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHH-HHHHHHTTS-CE
T ss_pred cCCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHH-HHHHHHcCC-EE
Confidence 34778999999999999999999999999988887544 44567889999999999 99988864 666799999 67
Q ss_pred EcCCcchh-----------------------HHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHh
Q 013869 242 FMPKFSVR-----------------------GIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAAS 298 (435)
Q Consensus 242 ~~~~~~~~-----------------------~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~ 298 (435)
++..+++. .+++. ++++++|++.++|+++..|++..+ ..
T Consensus 165 ~~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------i~~~~~t~l~~~Ps~~~~l~~~~~--------~~ 226 (369)
T 3hgu_A 165 FSIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNT----------LMNQDIRFLVTTPPVLRELLKRPE--------VV 226 (369)
T ss_dssp ECCCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH----------HHHSCEEEEEECHHHHHHHTTCHH--------HH
T ss_pred ECccCChHHHHHhhcccchhhhHHHHHHHHHHHHHH----------HHhCCCCEEEeCHHHHHHHHhhhh--------hh
Confidence 77776766 44445 667999999999999999988622 23
Q ss_pred hhhccccEEEEecCCCCCHHHHHHHH-HHh-CCcccccccCccccchhccCCCCCCCCCcccee------cCCCeEEEec
Q 013869 299 ASAAKQLRLMMCGSSALPLPVMQQWE-TIT-GHRLLERYGMTEFVMAISNPLRGARKAGTVGNP------LPGVQVKIAE 370 (435)
Q Consensus 299 ~~~l~~lr~i~~~G~~l~~~l~~~~~-~~~-~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~G~p------~~~~~~~i~d 370 (435)
...++++|.+++||++++++++++|. +.| ++++++.||+||+++++..... .++|+| .++++++|+|
T Consensus 227 ~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~~-----~~~G~~~~~~~~~~~~~v~ivD 301 (369)
T 3hgu_A 227 LQMKQSLAQITLGGTELNLDEIKFIASEILPDCEFSASYGSTSALGVSRSLLI-----TSESQQVIYDSFSPFITYDVVD 301 (369)
T ss_dssp HHHHHHCSEEEEESSCCCHHHHHHHHHHTCTTSEEEEEEEEGGGTEEEEECCB-----CTTCSSCEEECCTTTEEEEEEC
T ss_pred ccccCCeeEEEECCccCCHHHHHHHHHHhCCCcEEEcccCchhhhcceecccc-----ccCCCcccccCCCCCeEEEEEC
Confidence 34678899999999999999999999 899 8999999999999876543221 158888 9999999999
Q ss_pred C-CCCCCCCc-cceEEEecC
Q 013869 371 D-ESGSDAAG-VGEICVKSP 388 (435)
Q Consensus 371 ~-~~~~~~~~-~Gel~v~~~ 388 (435)
+ +++.++.+ .|||++++.
T Consensus 302 ~~~g~~vp~G~~GEl~vt~l 321 (369)
T 3hgu_A 302 SITAQTVEYGERGNVIVTHL 321 (369)
T ss_dssp TTTCSBCCTTCEEEEEEEEE
T ss_pred CCCCcCCCCCCceEEEEEEc
Confidence 7 78887777 799999873
No 37
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=97.78 E-value=7.6e-05 Score=72.99 Aligned_cols=114 Identities=14% Similarity=0.100 Sum_probs=63.0
Q ss_pred hhccc---cEEEEecCCCCCHHHHHHHHHHh-CCccc-ccccCccccchhccCCCCCCCCCccc-eecCC-CeEEEecCC
Q 013869 300 SAAKQ---LRLMMCGSSALPLPVMQQWETIT-GHRLL-ERYGMTEFVMAISNPLRGARKAGTVG-NPLPG-VQVKIAEDE 372 (435)
Q Consensus 300 ~~l~~---lr~i~~~G~~l~~~l~~~~~~~~-~~~l~-~~YG~tE~~~~~~~~~~~~~~~~~~G-~p~~~-~~~~i~d~~ 372 (435)
.-+|+ +..+..||- ..-...++..+ +.+++ ..|++||+. +..+... ...+...+ ...++ +-.+-++.+
T Consensus 294 ~lWPnl~~l~~~~~G~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg~-~gi~~~p-~~~~~~~~~~L~~~~~ffEFip~~ 368 (581)
T 4eql_A 294 RLWPNTKYIETVVTGSM---GQYVPMLNYYCNDLPLVSTTYGSSETT-FGINLDP-LCKPEDVSYTFMPNMSYFEFIPMD 368 (581)
T ss_dssp HHSTTCCEEEEECSGGG---GGGHHHHHHHHTTCCEECCEEECSSCE-EEECSCT-TSCGGGCCEEECTTSSEEEEEECS
T ss_pred HhCCCCcEEEEEcCCCh---HHHHHHHHHHcCCCccccCccccccce-eeeccCC-CCCcccCceeecCCcEEEEEEecc
Confidence 45677 555555562 33345555555 66777 899999963 2222211 11111222 22232 333444422
Q ss_pred C----CC-----CCCc-cceEEEecCCccccccCCchhcccccccCCccccCceEEEcC----CccEEEecccccCC
Q 013869 373 S----GS-----DAAG-VGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDE----DGYYIILGRKGIYF 435 (435)
Q Consensus 373 ~----~~-----~~~~-~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~g~~~~----dG~l~~~gR~~d~i 435 (435)
. +. +..| .+||++.+.. |.| -|++||+++++. ...+.|.||.+|+|
T Consensus 369 ~~~~~~~v~l~eVe~G~~YelViTt~~---GL~--------------RYr~GD~v~v~~f~~~~p~i~f~gR~~~~l 428 (581)
T 4eql_A 369 GGDKNDVVDLEDVKLGCTYEPVVTNFA---GLY--------------RMRVGDIVLVTGFYNNAPQFKFVRRENVVL 428 (581)
T ss_dssp TTCCSSCEEGGGCCTTCEEEEEEECSS---SCC--------------SEECCEEEEEEEEETTEEEEEEEEETTEEE
T ss_pred ccCCCcEeCHHHcCCCceEEEEEeecc---cee--------------eEEcCCEEEEcccCCCCcEEEEEEecCCEE
Confidence 1 11 2223 5888887642 222 189999999975 46899999999875
No 38
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=97.68 E-value=0.00042 Score=67.98 Aligned_cols=33 Identities=18% Similarity=0.190 Sum_probs=27.1
Q ss_pred cCCCCCCcEEEEecCCCC-CCCceEEeehHHHHH
Q 013869 165 DGQRGEDPALIVYTSGTT-GKPKGVVHTHKSIDA 197 (435)
Q Consensus 165 ~~~~~~~~~~i~~TSGtT-G~pK~v~~t~~~l~~ 197 (435)
....++.+.++..||||| |.||-|.+|...+-.
T Consensus 94 ~il~~~~i~~f~~SSGTT~gk~K~IP~t~~~l~~ 127 (609)
T 4b2g_A 94 AILSAHPISEFLTSSGTSAGERKLMPTIQEELDR 127 (609)
T ss_dssp SSSCSSCCCEEEEEEEEETTEEEEEEECTTHHHH
T ss_pred CccCCCCCCeEEeCCCCCCCCceeeecCHHHHHH
Confidence 345667788999999999 779999999887644
No 39
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=97.65 E-value=0.00029 Score=68.80 Aligned_cols=116 Identities=12% Similarity=0.147 Sum_probs=62.4
Q ss_pred hhhccccEEE--EecCCCCCHHHHHHHHHHh-CCccc-ccccCccccchhccCCCCCCCCCc-cceecCCC-eEEEe--c
Q 013869 299 ASAAKQLRLM--MCGSSALPLPVMQQWETIT-GHRLL-ERYGMTEFVMAISNPLRGARKAGT-VGNPLPGV-QVKIA--E 370 (435)
Q Consensus 299 ~~~l~~lr~i--~~~G~~l~~~l~~~~~~~~-~~~l~-~~YG~tE~~~~~~~~~~~~~~~~~-~G~p~~~~-~~~i~--d 370 (435)
..-+|+++.+ +.+|. + ..-...++..+ +.++. ..|++||+- +..+... ...++. ....+|+. -.+-+ +
T Consensus 298 ~~lWPnl~~i~~~~~G~-~-~~Y~~~l~~~~g~~p~~~~~Y~ASEg~-~gi~~~p-~~~~~~~~~~L~p~~~ffEFiP~~ 373 (581)
T 4epl_A 298 PALFPNAKYVYGIMTGS-M-EPYVPKLRHYAGDLPLVSHDYGSSEGW-IAANVTP-RLSPEEATFAVIPNLGYFEFLPVS 373 (581)
T ss_dssp HHHCTTCCCEEEECSGG-G-GGGHHHHHHHHTTSCEEECCEEETTEE-EEECCCT-TSCTTTCCEEECTTSCEEEEEEC-
T ss_pred HHhCCCCceEEEEeCCC-h-HHHHHHHHHHcCCCccccCceecccee-eeeecCC-CCCccccceeecCCcEEEEEEecc
Confidence 3467888644 33442 2 33335565555 66777 899999963 3322221 112211 22233332 22333 2
Q ss_pred CCCC---------CCCCc-cceEEEecCCccccccCCchhcccccccCCccccCceEEEcCC----ccEEEecccccCC
Q 013869 371 DESG---------SDAAG-VGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDED----GYYIILGRKGIYF 435 (435)
Q Consensus 371 ~~~~---------~~~~~-~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~g~~~~d----G~l~~~gR~~d~i 435 (435)
+.++ ++..| .+||++..-. |.| -|++||++++..- ..+.|.||.+++|
T Consensus 374 ~~~~~~~~~v~l~eve~G~~YelviTt~~---GL~--------------RYr~GD~v~v~g~~~~~p~~~~~gR~~~~l 435 (581)
T 4epl_A 374 ETGEGEEKPVGLTQVKIGEEYEVVITNYA---GLY--------------RYRLGDVVKVIGFYNNTPQLKFICRRNLIL 435 (581)
T ss_dssp ------CCCEEGGGCCTTCEEEEEEESTT---SCS--------------SEEEEEEEEEEEEETTEEEEEEEEETTCCB
T ss_pred cccCCCCceeeHHHcCCCCeEEEEEeecc---cee--------------eEEcCCEEEEecccCCCcEEEEEeecCCeE
Confidence 2211 12333 6888887642 222 1899999999642 5799999999875
No 40
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=91.59 E-value=1.5 Score=41.30 Aligned_cols=91 Identities=10% Similarity=0.138 Sum_probs=73.0
Q ss_pred cccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCC--CHHHHHHHHHHHHhCCeEEeCCCCC
Q 013869 25 KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKP--SFEFVAGVLGTWFSGCIAVPLALSY 102 (435)
Q Consensus 25 ~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~--~~~~~~~~lA~~~~G~~~v~l~~~~ 102 (435)
..+|.+.+...+..++..+.. .++.++|++....+. +...+...++++..|+.+++++..
T Consensus 108 v~~t~~~~~~~~~~~~~~~~~-----------------~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~- 169 (437)
T 2y27_A 108 VGYTAADIDTWANLVARSIRA-----------------AGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPFGGG- 169 (437)
T ss_dssp EEECHHHHHHHHHHHHHHHHH-----------------TTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECCCSC-
T ss_pred EecCHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeCCCC-
Confidence 358999998888777777766 488999999998885 344555678889999999987654
Q ss_pred CHHHHHHHHhcCCccEEEechhhHHHHHHHH
Q 013869 103 PESELLHVMHDSDISMVLSTEDYREVLQNVA 133 (435)
Q Consensus 103 ~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~ 133 (435)
..+.+...+++.++.+++..+.....+....
T Consensus 170 ~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~ 200 (437)
T 2y27_A 170 QTEKQVQLIQDFRPDIIMVTPSYMLSIADEI 200 (437)
T ss_dssp CHHHHHHHHHHHCCSEEEECHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCEEEECHHHHHHHHHHH
Confidence 7888899999999999999998887766543
No 41
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=91.23 E-value=1.8 Score=40.92 Aligned_cols=89 Identities=16% Similarity=0.180 Sum_probs=72.4
Q ss_pred ccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCC--HHHHHHHHHHHHhCCeEEeCCCCCC
Q 013869 26 SYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPS--FEFVAGVLGTWFSGCIAVPLALSYP 103 (435)
Q Consensus 26 ~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~--~~~~~~~lA~~~~G~~~v~l~~~~~ 103 (435)
.+|.+.+...+..++..+.. +++.++|++...++-+ ...+...++++..|+.+++++.. .
T Consensus 111 ~~t~~~~~~~~~~~~~~~~~-----------------~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~-~ 172 (443)
T 2y4o_A 111 GYTARDIDTWANVTARSIRA-----------------AGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPMSGG-Q 172 (443)
T ss_dssp EECHHHHHHHHHHHHHHHHH-----------------TTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECCCSC-C
T ss_pred ecCHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEECCCC-C
Confidence 58999998888877777766 4889999999988853 44556678888999999987664 7
Q ss_pred HHHHHHHHhcCCccEEEechhhHHHHHHH
Q 013869 104 ESELLHVMHDSDISMVLSTEDYREVLQNV 132 (435)
Q Consensus 104 ~~~l~~~l~~~~~~~vi~~~~~~~~~~~~ 132 (435)
.+.+...+++.++.+++..+.....+...
T Consensus 173 ~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~ 201 (443)
T 2y4o_A 173 TEKQVQLIRDFEPKIILVTPSYMLNLIDE 201 (443)
T ss_dssp HHHHHHHHHHHCCSEEEECHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcEEEECHHHHHHHHHH
Confidence 78888999999999999999887766554
No 42
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=90.33 E-value=2.1 Score=40.35 Aligned_cols=91 Identities=16% Similarity=0.069 Sum_probs=73.7
Q ss_pred cccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCC--HHHHHHHHHHHHhCCeEEeCCCCC
Q 013869 25 KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPS--FEFVAGVLGTWFSGCIAVPLALSY 102 (435)
Q Consensus 25 ~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~--~~~~~~~lA~~~~G~~~v~l~~~~ 102 (435)
..+|.+.+...+..++..+.. .++.++|++....+-+ ...+..+++++..|+.+++.+..
T Consensus 104 v~~th~~~~~~~~~~~~~~~~-----------------~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~- 165 (436)
T 3qov_A 104 IVHSQHDLDSWANLVARCLYM-----------------VGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAAG- 165 (436)
T ss_dssp EEEEHHHHHHHHHHHHHHHHH-----------------TTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCSC-
T ss_pred EEECHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCCC-
Confidence 358999998888888887776 4889999999988753 44556778889999999987654
Q ss_pred CHHHHHHHHhcCCccEEEechhhHHHHHHHH
Q 013869 103 PESELLHVMHDSDISMVLSTEDYREVLQNVA 133 (435)
Q Consensus 103 ~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~ 133 (435)
..+.+...+++.++.+++..+.....+....
T Consensus 166 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 196 (436)
T 3qov_A 166 NSKRQIKFISDFKTTALHAIPSYAIRLAEVF 196 (436)
T ss_dssp CHHHHHHHHHHHTCCEEECCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHCCCEEEECHHHHHHHHHHH
Confidence 6788899999999999999998887766553
No 43
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=87.71 E-value=5.9 Score=37.97 Aligned_cols=98 Identities=11% Similarity=0.051 Sum_probs=74.3
Q ss_pred CCCeeEEEe---------CCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCC-HHHHH
Q 013869 14 ARDSVAIRA---------DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPS-FEFVA 83 (435)
Q Consensus 14 ~p~~~al~~---------~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~-~~~~~ 83 (435)
.|+.+|++. ++..+|.+.+...+...... .++.++|++...+|-. ...+.
T Consensus 161 ~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~--------------------~~~~~~d~~l~~~p~~~~~g~~ 220 (501)
T 3ipl_A 161 NLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKES--------------------LGFDRDTNWLSVLPIYHISGLS 220 (501)
T ss_dssp CTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHH--------------------TCCCTTCEEEECSCTTSHHHHH
T ss_pred CCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHh--------------------hCCCccCEEEEeCcHHHHHHHH
Confidence 567777764 12468888887776665543 3778899999888765 33444
Q ss_pred HHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHH
Q 013869 84 GVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNV 132 (435)
Q Consensus 84 ~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~ 132 (435)
.+++++..|+..+..+. ..++.+...+++.++.+++..+.....+...
T Consensus 221 ~~~~~l~~G~~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 268 (501)
T 3ipl_A 221 VLLRAVIEGFTVRIVDK-FNAEQILTMIKNERITHISLVPQTLNWLMQQ 268 (501)
T ss_dssp HHHHHHHHTCEEEECSS-CCHHHHHHHHHHSCCCEEEECHHHHHHHHHH
T ss_pred HHHHHHHcCceEEeCCC-CCHHHHHHHHHHcCCcEEEchHHHHHHHHhc
Confidence 57788899999888754 6788899999999999999999888776554
No 44
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=81.86 E-value=8.7 Score=37.34 Aligned_cols=97 Identities=12% Similarity=0.118 Sum_probs=70.0
Q ss_pred CeeEEEe---------CCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCCHH--HHHH
Q 013869 16 DSVAIRA---------DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE--FVAG 84 (435)
Q Consensus 16 ~~~al~~---------~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~~~--~~~~ 84 (435)
+.+|++. ++..+|.+.+...+......+.. .++.++|++...+|-.-. +...
T Consensus 192 ~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~-----------------~~~~~~d~~l~~~p~~h~~g~~~~ 254 (548)
T 2d1s_A 192 EQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYG-----------------NQVSPGTAVLTVVPFHHGFGMFTT 254 (548)
T ss_dssp TCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTS-----------------CCCCTTCEEEECSCTTSHHHHHHH
T ss_pred CCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhc-----------------cCCCccceEEEeccHHHHHHHHHH
Confidence 7777764 23468998887666555443322 377889999888876522 2334
Q ss_pred HHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHH
Q 013869 85 VLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQN 131 (435)
Q Consensus 85 ~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~ 131 (435)
+++++ .|+..+..+ ...++.+...+++.++.+++..+.....+..
T Consensus 255 ~~~~l-~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 299 (548)
T 2d1s_A 255 LGYLI-CGFRVVMLT-KFDEETFLKTLQDYKCTSVILVPTLFAILNK 299 (548)
T ss_dssp HHHHH-TTCEEEECC-CCCHHHHHHHHHHTTEEEEEECHHHHHHHHH
T ss_pred HHHHh-cCcEEEEcC-CCCHHHHHHHHHHcCCcEEEecHHHHHHHHh
Confidence 56777 999988775 4678889999999999999999988776654
No 45
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=81.62 E-value=8 Score=37.63 Aligned_cols=86 Identities=15% Similarity=0.101 Sum_probs=64.1
Q ss_pred EEeehHHHHHHHHHHHHhc---cCCCCCeeEEeecchhhhHHHHHHHHHHHcCCEEEEcCCcch-hHHHHHHHhhcCCCC
Q 013869 188 VVHTHKSIDAQVQMLTEAW---EYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSV-RGIWQRWRESYPVNG 263 (435)
Q Consensus 188 v~~t~~~l~~~~~~~~~~~---~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~~~~~~~~~-~~~~~~~~~~~~~~~ 263 (435)
..+|++.+...+..++..+ ++.++|++...+|-+.-. +..+++++..|+..+..+...+ ..+...
T Consensus 49 ~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~--~~~~lA~~~~Gav~vpl~~~~~~~~l~~~--------- 117 (550)
T 3rix_A 49 VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQF--FMPVLGALFIGVAVAPANDIYNERELLNS--------- 117 (550)
T ss_dssp CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTT--HHHHHHHHHHTCEEEECCTTCCHHHHHHH---------
T ss_pred cEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcccH--HHHHHHHHHcCCEEeecCCcCCHHHHHHH---------
Confidence 3789999988877776654 788999999998876544 3468999999999998876444 444444
Q ss_pred CccccccceeccccHHHHHHHh
Q 013869 264 NRAGEAITAFTGVPTMYTRLIQ 285 (435)
Q Consensus 264 ~i~~~~~t~~~~~P~~~~~l~~ 285 (435)
+...+++.++..+..+..+.+
T Consensus 118 -l~~~~~~~vi~~~~~~~~~~~ 138 (550)
T 3rix_A 118 -MNISQPTVVFVSKKGLQKILN 138 (550)
T ss_dssp -HHHHCCSEEEECGGGHHHHHH
T ss_pred -HHhcCCeEEEEcHHHHHHHHH
Confidence 444688889888887766654
No 46
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=80.68 E-value=16 Score=35.41 Aligned_cols=99 Identities=14% Similarity=0.094 Sum_probs=72.4
Q ss_pred CCCeeEEEe---------CCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCCH--HHH
Q 013869 14 ARDSVAIRA---------DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSF--EFV 82 (435)
Q Consensus 14 ~p~~~al~~---------~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~~--~~~ 82 (435)
.|+.+|++. ++..+|.+.+...+......+ ++.++|++...+|-+- .+.
T Consensus 180 ~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~--------------------~~~~~d~~l~~~p~~h~~~~~ 239 (539)
T 1mdb_A 180 KSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVC--------------------WLDHSTVYLAALPMAHNYPLS 239 (539)
T ss_dssp CTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH--------------------TCCTTCEEEECSCTTSHHHHH
T ss_pred CcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhh--------------------CCCCCCEEEEeecccccchhh
Confidence 456677763 224689988877766554433 6788999988887652 222
Q ss_pred H-HHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHH
Q 013869 83 A-GVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVA 133 (435)
Q Consensus 83 ~-~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~ 133 (435)
. .+++++..|+..+..+ ...++.+...+++.++.+++..+.....+....
T Consensus 240 ~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 290 (539)
T 1mdb_A 240 SPGVLGVLYAGGRVVLSP-SPSPDDAFPLIEREKVTITALVPPLAMVWMDAA 290 (539)
T ss_dssp SSHHHHHHHTTCEEEECS-SSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCEEEECC-CCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCc
Confidence 2 4788889999998765 457888999999999999999998887765543
No 47
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=79.86 E-value=16 Score=35.43 Aligned_cols=106 Identities=12% Similarity=0.018 Sum_probs=72.2
Q ss_pred CCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhc---cCCCCCeeEEeecchhhhHHHHHHHHHHHcCCEEEEcC
Q 013869 168 RGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAW---EYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMP 244 (435)
Q Consensus 168 ~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~---~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~~~~~ 244 (435)
.++.+|++....+..+ -..-.+|++.+...+..++..+ ++.++|++..+++-+.-. +..+++++..|+..+..+
T Consensus 32 ~p~~~A~~~~~~~~~~-~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~--~~~~lA~~~~G~~~vpl~ 108 (549)
T 3g7s_A 32 FGEKTAIISAEPKFPS-EFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDY--VMTIYALWRVAATPVPIN 108 (549)
T ss_dssp HTTSEEEEEESSCCCC-SSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH--HHHHHHHHHTTCEEEECC
T ss_pred CCCceEEEeCCCcccc-cccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH--HHHHHHHHHhCCEEEccC
Confidence 4577777654322111 1225789999888777776654 788999999998876544 346899999999999998
Q ss_pred CcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHh
Q 013869 245 KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQ 285 (435)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 285 (435)
+..+.+-+..+ +...+++.++..+.....+..
T Consensus 109 ~~~~~~~l~~i---------l~~~~~~~~i~~~~~~~~~~~ 140 (549)
T 3g7s_A 109 PMYKSFELEHI---------LNDSEATTLVVHSMLYENFKP 140 (549)
T ss_dssp TTCCHHHHHHH---------HHHTTCSEEEEEGGGHHHHHH
T ss_pred CCCCHHHHHHH---------HHhcCCCEEEEChHHHHHHHH
Confidence 75554444443 445688888887776665543
No 48
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=78.94 E-value=15 Score=35.58 Aligned_cols=98 Identities=12% Similarity=0.093 Sum_probs=72.3
Q ss_pred CCCeeEEEe---------CCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCCHHH--H
Q 013869 14 ARDSVAIRA---------DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF--V 82 (435)
Q Consensus 14 ~p~~~al~~---------~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~~~~--~ 82 (435)
.|+.+|++. ++..+|.+.+...+...+..+ ++.++|++...+|-...+ .
T Consensus 189 ~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~--------------------~~~~~d~~l~~~p~~h~~~~~ 248 (544)
T 3o83_A 189 PADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEIC--------------------GLNSNTRLLCALPAPHNFMLS 248 (544)
T ss_dssp CTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHT--------------------TCCTTCEEEECSCTTSHHHHH
T ss_pred CccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHh--------------------CCCCCCeEEEecCcceEeecc
Confidence 467777763 234689998877776665443 778899999888765333 2
Q ss_pred H-HHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHH
Q 013869 83 A-GVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNV 132 (435)
Q Consensus 83 ~-~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~ 132 (435)
. .+++++..|+..+..+. ..+..+...+++.++.++...+.....+...
T Consensus 249 ~~~~~~~l~~G~~~v~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 298 (544)
T 3o83_A 249 SPGALGVLHAGGCVVMAPN-PEPLNCFSIIQRHQVNMASLVPSAVIMWLEK 298 (544)
T ss_dssp SSHHHHHHHTTCEEEECSS-CCHHHHHHHHHHHTCCEEEECHHHHHHHHHH
T ss_pred hHHHHHHHHcCCEEEECCC-CCHHHHHHHHHHHCCCEEEechHHHHHHHhc
Confidence 2 47888889999887754 5778888899999999999999887766544
No 49
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=78.27 E-value=12 Score=35.88 Aligned_cols=98 Identities=13% Similarity=-0.015 Sum_probs=70.0
Q ss_pred CCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhc---cCCCCCeeEEeecchhhhHHHHHHHHHHHcCCEEEEcC
Q 013869 168 RGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAW---EYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMP 244 (435)
Q Consensus 168 ~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~---~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~~~~~ 244 (435)
.++.+|++. ....+|++.+...+..++..+ ++.+++++...+|-+.-. +..+++++..|+..+..+
T Consensus 19 ~pd~~Al~~---------~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~--~~~~lA~~~~Ga~~vpl~ 87 (509)
T 3ivr_A 19 FPDRTAFMV---------DGVRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEM--IELIGAVALIGAILLPVN 87 (509)
T ss_dssp STTSEEEEE---------TTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHH--HHHHHHHHHTTCEEEECC
T ss_pred CCCceEEEE---------CCcEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHH--HHHHHHHHHhCCEEEecC
Confidence 456777664 125789999988887776654 788999999988876443 346899999999999998
Q ss_pred CcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHh
Q 013869 245 KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQ 285 (435)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 285 (435)
...+.+-+..+ ++..++..++..+.....+..
T Consensus 88 ~~~~~~~l~~~---------l~~~~~~~vi~~~~~~~~~~~ 119 (509)
T 3ivr_A 88 YRLNADEIAFV---------LGDGAPSVVVAGTDYRDIVAG 119 (509)
T ss_dssp TTSCHHHHHHH---------HHHHCEEEEEECSTTHHHHHH
T ss_pred CCCCHHHHHHH---------HHhcCceEEEECcchhhhHHh
Confidence 75444444443 444688888888776665433
No 50
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=77.54 E-value=12 Score=36.20 Aligned_cols=100 Identities=16% Similarity=0.190 Sum_probs=69.4
Q ss_pred CCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhc---cCCCCCeeEEeecchhhhHHHHHHHHHHHcCCEEEEc
Q 013869 167 QRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAW---EYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFM 243 (435)
Q Consensus 167 ~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~---~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~~~~ 243 (435)
..++.++++.. .+| ..+|++.+...+..++..+ ++.++|++...+|-+.-. +..+++++..|+..+..
T Consensus 34 ~~p~~~a~~~~---~~~----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~--~~~~la~~~~Gav~vpl 104 (536)
T 3ni2_A 34 NHSSKPCLING---ANG----DVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEF--VLAFLGASHRGAIITAA 104 (536)
T ss_dssp GSTTSEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH--HHHHHHHHHHTCEEEEC
T ss_pred cCCCceEEEEC---CCC----CEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHH--HHHHHHHHHhCCEEecc
Confidence 35677776542 222 4689999988777776554 788999999988876443 34689999999999998
Q ss_pred CCcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHH
Q 013869 244 PKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLI 284 (435)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 284 (435)
+...+..-+..+ ++..++..++..+.....+.
T Consensus 105 ~~~~~~~~l~~~---------l~~~~~~~~i~~~~~~~~~~ 136 (536)
T 3ni2_A 105 NPFSTPAELAKH---------AKASRAKLLITQACYYEKVK 136 (536)
T ss_dssp CTTCCHHHHHHH---------HHHHTEEEEEECGGGTHHHH
T ss_pred CCCCCHHHHHHH---------HHhcCCEEEEEChHHHHHHH
Confidence 875444444443 44467888887776655544
No 51
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=76.73 E-value=21 Score=34.31 Aligned_cols=96 Identities=6% Similarity=0.071 Sum_probs=69.3
Q ss_pred CCCeeEEEe--C-------CcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCCHHH-H-
Q 013869 14 ARDSVAIRA--D-------QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF-V- 82 (435)
Q Consensus 14 ~p~~~al~~--~-------~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~~~~-~- 82 (435)
.|+.+|++. . +..+|.+.+...+...+..+ ++.++|++...+|-.-.+ +
T Consensus 168 ~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~--------------------~~~~~d~~l~~~p~~~~~~~~ 227 (517)
T 3r44_A 168 GGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTI--------------------DVRYRDRLLLPLPMFHVAALT 227 (517)
T ss_dssp CTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHS--------------------CCCTTCEEEECSCTTSHHHHH
T ss_pred CCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhc--------------------CCCCCCEEEEeCchHHHHHHH
Confidence 356677663 1 24689988877766655443 678899999888876332 2
Q ss_pred HHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHH
Q 013869 83 AGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQN 131 (435)
Q Consensus 83 ~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~ 131 (435)
..+++++ .|+..+..+ ......+...+++.++.++...+.....+..
T Consensus 228 ~~~~~~~-~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 274 (517)
T 3r44_A 228 TVIFSAM-RGVTLISMP-QFDATKVWSLIVEERVCIGGAVPAILNFMRQ 274 (517)
T ss_dssp HHHHHHH-HTCEEEECS-SCCHHHHHHHHHHTTCCEEEECHHHHHHHHH
T ss_pred HHHHHHh-cCeEEEEeC-CCCHHHHHHHHHHhCCeEEEeHHHHHHHHHh
Confidence 2345555 898888774 5688889999999999999999988776654
No 52
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=76.29 E-value=9.8 Score=34.67 Aligned_cols=86 Identities=8% Similarity=-0.068 Sum_probs=61.6
Q ss_pred cccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCC--CHHHHHHHHHHHHhCCeEEeCCCCC
Q 013869 25 KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKP--SFEFVAGVLGTWFSGCIAVPLALSY 102 (435)
Q Consensus 25 ~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~--~~~~~~~~lA~~~~G~~~v~l~~~~ 102 (435)
..+|.+.+...+..++..+.. .++.++|++..+++- +.-.+...++++..|+.+++.. .
T Consensus 109 v~~t~~~~~~~~~~~~~~~~~-----------------~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~~~--~ 169 (369)
T 3hgu_A 109 VVAYDAWIEALISWRMSGYQH-----------------RPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSID--I 169 (369)
T ss_dssp EEECHHHHHHHHHHHTTTTTT-----------------STTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEECCC--C
T ss_pred EEECHHHHHHHHHHHHhhHHh-----------------hCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEECcc--C
Confidence 357888888777766655555 488999999999886 3344455566688899665543 2
Q ss_pred CHH-----------------------HHHHHHhcCCccEEEechhhHHHH
Q 013869 103 PES-----------------------ELLHVMHDSDISMVLSTEDYREVL 129 (435)
Q Consensus 103 ~~~-----------------------~l~~~l~~~~~~~vi~~~~~~~~~ 129 (435)
.+. ++...+++.++.+++..+.....+
T Consensus 170 dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l 219 (369)
T 3hgu_A 170 DPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLREL 219 (369)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHH
T ss_pred ChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHH
Confidence 333 566688999999999998876654
No 53
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=75.20 E-value=24 Score=34.05 Aligned_cols=100 Identities=12% Similarity=-0.022 Sum_probs=68.1
Q ss_pred CCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhc---cCCCCCeeEEeecchhhhHHHHHHHHHHHcCCEEEEcC
Q 013869 168 RGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAW---EYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMP 244 (435)
Q Consensus 168 ~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~---~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~~~~~ 244 (435)
.++.++++....+ ....+|++.+...+..++..+ ++.++|++...++-+.-. +..+++++..|+..+..+
T Consensus 31 ~p~~~a~~~~~~~-----~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~--~~~~lA~~~~Gav~vpl~ 103 (541)
T 1v25_A 31 FGRKEVVSRLHTG-----EVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRH--LEAYFAVPGMGAVLHTAN 103 (541)
T ss_dssp STTCEEEEECTTS-----CEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH--HHHHHHHHHTTCEEEECC
T ss_pred CCCceEEEEecCC-----CCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHH--HHHHHHHHhcCcEEEecC
Confidence 4566676543211 245789999888777776544 788999999888876443 346899999999999987
Q ss_pred CcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHH
Q 013869 245 KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRL 283 (435)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l 283 (435)
...+.+-+..+ ++..+++.++..+.....+
T Consensus 104 ~~~~~~~l~~~---------l~~~~~~~vi~~~~~~~~~ 133 (541)
T 1v25_A 104 PRLSPKEIAYI---------LNHAEDKVLLFDPNLLPLV 133 (541)
T ss_dssp TTSCHHHHHHH---------HHHHTCSEEEECGGGHHHH
T ss_pred cccCHHHHHHH---------HHhCCCcEEEEChhHHHHH
Confidence 65444333333 4446788888777665544
No 54
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=75.11 E-value=6.7 Score=35.78 Aligned_cols=95 Identities=13% Similarity=-0.004 Sum_probs=65.7
Q ss_pred CCCeeEEEe---------CCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCC-HHHHH
Q 013869 14 ARDSVAIRA---------DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPS-FEFVA 83 (435)
Q Consensus 14 ~p~~~al~~---------~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~-~~~~~ 83 (435)
+.|.+|++. ++..+|.+.+...+..++..+ ++.++|++...+|-+ .-.+.
T Consensus 35 ~~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~--------------------~~~~~d~~l~~~pl~h~~gl~ 94 (358)
T 4gs5_A 35 LGGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKAL--------------------SLGPGTRALVCLNVGYIAGLM 94 (358)
T ss_dssp HHTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHT--------------------TCCTTCEEEECSCTTSHHHHH
T ss_pred CCCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHh--------------------CCCCCCEEEEECChHHHHHHH
Confidence 345667663 234699998877766655543 778899999888765 34455
Q ss_pred HHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHH
Q 013869 84 GVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQN 131 (435)
Q Consensus 84 ~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~ 131 (435)
.++..+..|+..+..++... ....+++.++.++...+.....+.+
T Consensus 95 ~~~~~l~~g~~~~~~~~~~~---~~~~i~~~~~t~~~~~P~~l~~ll~ 139 (358)
T 4gs5_A 95 MLVRGMELDWELTVTEPTAN---PLAGLDHADFDFVAMVPMQLQSILE 139 (358)
T ss_dssp HHHHHHHHTCEEEEECCCSC---TTTTCSSCCCSEEEECHHHHHHHHH
T ss_pred HHHHHHHhCcEEEecCcccc---HHHHHHHhCCeEEEcChHHHHHhhc
Confidence 56667778888777665433 2446788999999999887766544
No 55
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=74.82 E-value=22 Score=33.58 Aligned_cols=106 Identities=12% Similarity=0.068 Sum_probs=71.6
Q ss_pred CCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhc---cCCCCCeeEEeecchhhhHHHHHHHHHHHcCCEEEEcC
Q 013869 168 RGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAW---EYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMP 244 (435)
Q Consensus 168 ~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~---~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~~~~~ 244 (435)
.++.+|++..............+|++.+...+..++..+ +. ++|++...++-+.-. +..+++++..|+..+.++
T Consensus 37 ~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~--~~~~lA~~~~G~v~vpl~ 113 (480)
T 3t5a_A 37 QPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEY--VVAFLGALQAGRIAVPLS 113 (480)
T ss_dssp STTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHH--HHHHHHHHHTTCEEEEEC
T ss_pred CCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHH--HHHHHHHHHhCcEEEeeC
Confidence 567777766542211112346899999998888887765 43 789998888776443 346899999999999886
Q ss_pred C----cchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhh
Q 013869 245 K----FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQG 286 (435)
Q Consensus 245 ~----~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 286 (435)
. .....+... +...++..++..+.....+.+.
T Consensus 114 ~~~~~~~~~~l~~i----------l~~~~~~~vi~~~~~~~~~~~~ 149 (480)
T 3t5a_A 114 VPQGGVTDERSDSV----------LSDSSPVAILTTSSAVDDVVQH 149 (480)
T ss_dssp SCCSCTTCCHHHHH----------HHHHCCSEEEECTTTHHHHHHT
T ss_pred CCCccchHHHHHHH----------HHhCCCCEEEeChhHHHHHHHH
Confidence 5 233444444 3446788888887776666543
No 56
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=74.39 E-value=7.9 Score=37.20 Aligned_cols=96 Identities=18% Similarity=0.098 Sum_probs=70.5
Q ss_pred CCCeeEEEe--C-------CcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCCH-HHHH
Q 013869 14 ARDSVAIRA--D-------QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSF-EFVA 83 (435)
Q Consensus 14 ~p~~~al~~--~-------~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~~-~~~~ 83 (435)
.|+.+|++. . +..+|.+.+...+...... .++.++|++....|-+. -.+.
T Consensus 142 ~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~--------------------~~~~~~d~~l~~~p~~~~~~~~ 201 (512)
T 3fce_A 142 KGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVED--------------------FNLQTGQVFLNQAPFSFDLSVM 201 (512)
T ss_dssp CTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHH--------------------TTCCSSCEEEECSCTTSGGGHH
T ss_pred CCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHh--------------------cCCCCCCEEEEeCCccHhHHHH
Confidence 456677663 2 2468988887766555443 37788999999888763 2344
Q ss_pred HHHHHHHhCCeEEeCCCC--CCHHHHHHHHhcCCccEEEechhhHHHH
Q 013869 84 GVLGTWFSGCIAVPLALS--YPESELLHVMHDSDISMVLSTEDYREVL 129 (435)
Q Consensus 84 ~~lA~~~~G~~~v~l~~~--~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 129 (435)
.+++++..|+..+.++.. ..+..+...+++.++.+++..+.....+
T Consensus 202 ~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l 249 (512)
T 3fce_A 202 DIYPSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMC 249 (512)
T ss_dssp HHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHH
T ss_pred HHHHHHhCCCEEEECCHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHH
Confidence 578888999999887653 4577888899999999999999877654
No 57
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=73.24 E-value=13 Score=35.59 Aligned_cols=98 Identities=10% Similarity=0.029 Sum_probs=71.1
Q ss_pred CCCeeEEEe---------CCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccC--CCCCeEEEEeCCCHHH-
Q 013869 14 ARDSVAIRA---------DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAG--GCGARIGIVAKPSFEF- 81 (435)
Q Consensus 14 ~p~~~al~~---------~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~--~~g~~V~i~~~~~~~~- 81 (435)
.|+.+|++. ++..+|.+.+...+..+... .++ .++|++...+|-.-.+
T Consensus 151 ~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~--------------------~~~~~~~~~~~l~~~p~~~~~g 210 (504)
T 1t5h_X 151 EPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQ--------------------VGLRHGRHNVVLGLMPLYHVVG 210 (504)
T ss_dssp CTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHT--------------------TCCCSSTTCEEEECSCTTSHHH
T ss_pred CCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHh--------------------hCCCCCCCceEEeecchhhcch
Confidence 466777763 22468888887666554432 255 6788888887765332
Q ss_pred -HHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHH
Q 013869 82 -VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNV 132 (435)
Q Consensus 82 -~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~ 132 (435)
...+++++..|+..+..+. ..+..+...+++.++.+++..+.....+...
T Consensus 211 ~~~~~~~~l~~G~~~v~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 261 (504)
T 1t5h_X 211 FFAVLVAALALDGTYVVVEE-FRPVDALQLVQQEQVTSLFATPTHLDALAAA 261 (504)
T ss_dssp HTTTHHHHHHTTCEEEECSS-CCHHHHHHHHHHHTCCEEECCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCceEEeCCC-CCHHHHHHHHHHhCCeEEEeChHHHHHHHhh
Confidence 2457888899999987754 6788888999999999999999888777654
No 58
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=72.85 E-value=10 Score=36.45 Aligned_cols=97 Identities=15% Similarity=0.010 Sum_probs=70.4
Q ss_pred CCCeeEEEe--C-------CcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCCH-HHHH
Q 013869 14 ARDSVAIRA--D-------QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSF-EFVA 83 (435)
Q Consensus 14 ~p~~~al~~--~-------~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~~-~~~~ 83 (435)
.++.+|++. . +..+|.+.+...+..++.. .++.++|++....|-+. -.+.
T Consensus 141 ~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~--------------------~~~~~~d~~l~~~p~~~~~~~~ 200 (511)
T 3e7w_A 141 KEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICAD--------------------FPVSGGKIFLNQAPFSFDLSVM 200 (511)
T ss_dssp CTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHH--------------------STTTTTCEEEECSCTTSTHHHH
T ss_pred CCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHh--------------------cCCCccceEEEeCCccHHHHHH
Confidence 456677663 1 2468888887766655443 36788999998888763 3344
Q ss_pred HHHHHHHhCCeEEeCCCC--CCHHHHHHHHhcCCccEEEechhhHHHHH
Q 013869 84 GVLGTWFSGCIAVPLALS--YPESELLHVMHDSDISMVLSTEDYREVLQ 130 (435)
Q Consensus 84 ~~lA~~~~G~~~v~l~~~--~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 130 (435)
.+++++..|+..+.++.. ..+..+...+++.++.+++..+.....+.
T Consensus 201 ~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 249 (511)
T 3e7w_A 201 DLYPCLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCL 249 (511)
T ss_dssp HHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHH
T ss_pred HHHHHHhcCCEEEEcChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHH
Confidence 578888999998877543 45677888999999999999998776554
No 59
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=71.56 E-value=40 Score=33.17 Aligned_cols=98 Identities=12% Similarity=0.065 Sum_probs=71.9
Q ss_pred CCCeeEEEe---------CCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCCH--HHH
Q 013869 14 ARDSVAIRA---------DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSF--EFV 82 (435)
Q Consensus 14 ~p~~~al~~---------~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~~--~~~ 82 (435)
.|+.+|++. ++..+|.+.+...+......+ ++.++|++....+-+. .+.
T Consensus 182 ~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~--------------------~~~~~~~~l~~~p~~~~~~~~ 241 (617)
T 3rg2_A 182 PADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEIC--------------------QFTQQTRYLCAIPAAHNYAMS 241 (617)
T ss_dssp CTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH--------------------TCCTTCEEEECSCTTSHHHHH
T ss_pred CCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhc--------------------CCCCcceEEEeccchhhhhhh
Confidence 356777763 234689988877766655543 6688999998887553 333
Q ss_pred H-HHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHH
Q 013869 83 A-GVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNV 132 (435)
Q Consensus 83 ~-~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~ 132 (435)
. .+++++..|+..+..+. .....+...+++.++.++...+.....+...
T Consensus 242 ~~~~~~~l~~G~~~v~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 291 (617)
T 3rg2_A 242 SPGSLGVFLAGGTVVLAAD-PSATLCFPLIEKHQVNVTALVPPAVSLWLQA 291 (617)
T ss_dssp SSHHHHHHHHTCEEEECSS-CCHHHHHHHHHHTTCCEEEECHHHHHHHHHH
T ss_pred HHHHHHHHHcCCEEEEeCC-CCHHHHHHHHHHhCCcEEEcchHHHHHHHHh
Confidence 2 47888889998887654 4677788899999999999999888766554
No 60
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=69.91 E-value=37 Score=33.05 Aligned_cols=100 Identities=10% Similarity=0.043 Sum_probs=68.6
Q ss_pred CCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhc---cCCCCCeeEEeecchhhhHHHHHHHHHHHcCCEEEEcC
Q 013869 168 RGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAW---EYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMP 244 (435)
Q Consensus 168 ~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~---~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~~~~~ 244 (435)
.++.+|++.... .....+|++.+...+..++..+ ++.+++++...+|-+.-. +..+++++..|+..+..+
T Consensus 24 ~p~~~a~~~~~~-----~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~--~~~~lA~~~~G~~~vpl~ 96 (590)
T 3kxw_A 24 SPNKKSCTFLNK-----ELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPL--IQAFLGCLYAGCIAVPIY 96 (590)
T ss_dssp CTTSEEEEEEET-----TEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH--HHHHHHHHHTTCEEEEEC
T ss_pred CCCCeEEEEEcC-----CeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhH--HHHHHHHHHhCcEEEEec
Confidence 467777665431 1345789999988777776544 788999999988876543 346899999999999887
Q ss_pred Ccch----hHHHHHHHhhcCCCCCccccccceeccccHHHHHHH
Q 013869 245 KFSV----RGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLI 284 (435)
Q Consensus 245 ~~~~----~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 284 (435)
+... ..+... +...++..++..+.....+.
T Consensus 97 ~~~~~~~~~~~~~~----------l~~~~~~~vi~~~~~~~~~~ 130 (590)
T 3kxw_A 97 PPAQEKLLDKAQRI----------VTNSKPVIVLMIADHIKKFT 130 (590)
T ss_dssp CCCSHHHHHHHHHH----------HHHHCCSEEEECHHHHHHHC
T ss_pred CCCchHHHHHHHHH----------HHhCCCCEEEeCHHHHHHHH
Confidence 6432 222233 44467777777777665553
No 61
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=69.34 E-value=29 Score=33.69 Aligned_cols=95 Identities=12% Similarity=-0.022 Sum_probs=64.7
Q ss_pred CCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHh---ccCCCCCeeEEeecchhhhHHHHHHHHHHHcCCEEEEcC
Q 013869 168 RGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEA---WEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMP 244 (435)
Q Consensus 168 ~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~---~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~~~~~ 244 (435)
.++.+|++.. ...+|++.+...+..++.. .++.++|++...+|-+.-. +..+++++..|+..+..+
T Consensus 52 ~p~~~Al~~~---------~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~--~~~~lA~~~~Gav~vpl~ 120 (563)
T 1amu_A 52 RPNNVAIVCE---------NEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDL--FIGILAVLKAGGAYVPID 120 (563)
T ss_dssp CTTSEEEEET---------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH--HHHHHHHHHTTCEEEECC
T ss_pred CCCCeEEEeC---------CceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHH--HHHHHHHHHhCCEEEEeC
Confidence 4566776531 2368999988877776654 4788999999888876443 346899999999999988
Q ss_pred CcchhHHHHHHHhhcCCCCCccccccceeccccHHHHH
Q 013869 245 KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTR 282 (435)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~ 282 (435)
...+.+-+..+ +...++..++..+.....
T Consensus 121 ~~~~~~~l~~i---------l~~~~~~~li~~~~~~~~ 149 (563)
T 1amu_A 121 IEYPKERIQYI---------LDDSQARMLLTQKHLVHL 149 (563)
T ss_dssp TTSCHHHHHHH---------HHHHTCSEEEECGGGHHH
T ss_pred CCCcHHHHHHH---------HHhcCCCEEEEcCchhhh
Confidence 65444433333 344577777776655443
No 62
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=68.98 E-value=37 Score=33.04 Aligned_cols=101 Identities=14% Similarity=0.063 Sum_probs=67.6
Q ss_pred CCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhc----cCCCCCeeEEeecchhhhHHHHHHHHHHHcCCEEEEc
Q 013869 168 RGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAW----EYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFM 243 (435)
Q Consensus 168 ~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~----~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~~~~ 243 (435)
.++.+|++.... .| ....+|++.+...+..++..+ ++.++|++...+|-+.-. +..+++++..|+..+..
T Consensus 56 ~p~~~al~~~~~--~g--~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~e~--~~~~lA~~~~Ga~~vpl 129 (570)
T 3c5e_A 56 RPPSPALWWVNG--KG--KELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEW--WLVILGCIRAGLIFMPG 129 (570)
T ss_dssp SCCCEEEEEECS--SS--CEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCHHH--HHHHHHHHHHTCEEEEC
T ss_pred CCCceEEEEEcC--CC--ceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCHHH--HHHHHHHHHcCeEEEec
Confidence 567777765421 11 235789999988777776543 678999999888876543 34689999999999988
Q ss_pred CCcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHH
Q 013869 244 PKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRL 283 (435)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l 283 (435)
+...+.+-+..+ ++..++..++..+.....+
T Consensus 130 ~~~~~~~~l~~~---------l~~~~~~~vi~~~~~~~~~ 160 (570)
T 3c5e_A 130 TIQMKSTDILYR---------LQMSKAKAIVAGDEVIQEV 160 (570)
T ss_dssp CTTCCHHHHHHH---------HHHHTCSEEEEETTTHHHH
T ss_pred CCCCCHHHHHHH---------HHhcCCeEEEechHHHHHH
Confidence 765443333333 3445777777666655444
No 63
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=68.73 E-value=16 Score=34.93 Aligned_cols=82 Identities=9% Similarity=-0.060 Sum_probs=59.2
Q ss_pred EEeehHHHHHHHHHHHHhc---cCCCCCeeEEeecchhhhHHHHHHHHHHHcCCEEEEcCCcchhHHHHHHHhhcCCCCC
Q 013869 188 VVHTHKSIDAQVQMLTEAW---EYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGN 264 (435)
Q Consensus 188 v~~t~~~l~~~~~~~~~~~---~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (435)
-.+|++.+...+..++..+ ++.++|++...+|-+.-. +..+++++..|+..+..+...+..-+..+
T Consensus 27 ~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~--~~~~lA~~~~Ga~~vpl~~~~~~~~l~~i--------- 95 (503)
T 4fuq_A 27 DKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEA--LVLYLATVRAGGVYLPLNTAYTLHELDYF--------- 95 (503)
T ss_dssp CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHH--HHHHHHHHHTTCEEEECCTTCCHHHHHHH---------
T ss_pred cEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH--HHHHHHHHHcCcEEEecCCCCCHHHHHHH---------
Confidence 3689999988877776654 788999999988876443 34689999999999999875444444443
Q ss_pred ccccccceeccccHHH
Q 013869 265 RAGEAITAFTGVPTMY 280 (435)
Q Consensus 265 i~~~~~t~~~~~P~~~ 280 (435)
++..+++.++..+...
T Consensus 96 l~~~~~~~vi~~~~~~ 111 (503)
T 4fuq_A 96 ITDAEPKIVVCDPSKR 111 (503)
T ss_dssp HHHHCCSEEEECGGGT
T ss_pred HHhcCCcEEEECchhh
Confidence 4446777777766543
No 64
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=68.40 E-value=21 Score=34.88 Aligned_cols=94 Identities=15% Similarity=0.108 Sum_probs=65.3
Q ss_pred CCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhc---cCCCCCeeEEeecchhhhHHHHHHHHHHHcCCEEEEcC
Q 013869 168 RGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAW---EYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMP 244 (435)
Q Consensus 168 ~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~---~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~~~~~ 244 (435)
.++.+|++..... | ....+|++.+...+..++..+ ++.++|++...+|-+.-. +..+++++..|+..+..+
T Consensus 69 ~pd~~Al~~~~~~--g--~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~--~~~~lA~~~~Gav~vpl~ 142 (580)
T 3etc_A 69 SPEKLAMIWCDDY--G--NEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDF--WYCMLGLHKLGAIAVPAT 142 (580)
T ss_dssp CTTCEEEEEEESS--S--CEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHH--HHHHHHHHHHTCEEEECC
T ss_pred CCCCEEEEEEcCC--C--CEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHH--HHHHHHHHhCCEEEEeCC
Confidence 5678887764321 1 346789999888777776554 788999999998876543 446899999999999887
Q ss_pred Ccc-hhHHHHHHHhhcCCCCCccccccceecccc
Q 013869 245 KFS-VRGIWQRWRESYPVNGNRAGEAITAFTGVP 277 (435)
Q Consensus 245 ~~~-~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P 277 (435)
... ...+... ++..++..++..+
T Consensus 143 ~~~~~~~l~~~----------l~~~~~~~ii~~~ 166 (580)
T 3etc_A 143 HMLKTRDIVYR----------IEKAGLKMIVCIA 166 (580)
T ss_dssp TTCCHHHHHHH----------HHHHTCCEEEEES
T ss_pred ccCCHHHHHHH----------HHhcCCCEEEEec
Confidence 644 4444444 3335666666544
No 65
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=65.52 E-value=25 Score=33.79 Aligned_cols=95 Identities=14% Similarity=0.079 Sum_probs=65.4
Q ss_pred CCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhc---cCCCCCeeEEeecchhhhHHHHHHHHHHHcCCEEEEcC
Q 013869 168 RGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAW---EYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMP 244 (435)
Q Consensus 168 ~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~---~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~~~~~ 244 (435)
.++.+|++.. | ..+|++.+...+..++..+ ++.++|++...++-+.-. +..+++++..|+..+..+
T Consensus 36 ~p~~~A~~~~-----~----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~--~~~~lA~~~~G~~~vpl~ 104 (529)
T 2v7b_A 36 RAGKTAYIDD-----T----GSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVAL--PVAFLGALYAGVVPVVAN 104 (529)
T ss_dssp GTTSEEEECS-----S----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHH--HHHHHHHHHHTCEEEECC
T ss_pred cCCceEEEeC-----C----CCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHH--HHHHHHHHHcCceEEecC
Confidence 5566776532 1 3689999888777776544 788999999888876543 346889999999999887
Q ss_pred Cc-chhHHHHHHHhhcCCCCCccccccceeccccHHHHHH
Q 013869 245 KF-SVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRL 283 (435)
Q Consensus 245 ~~-~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l 283 (435)
.. ........ +...+++.++..+.....+
T Consensus 105 ~~~~~~~l~~~----------l~~~~~~~vi~~~~~~~~~ 134 (529)
T 2v7b_A 105 TLLTPADYVYM----------LTHSHARAVIASGALVQNV 134 (529)
T ss_dssp TTCCHHHHHHH----------HHHHTCSEEEEEGGGHHHH
T ss_pred cccCHHHHHHH----------HhccCCeEEEechhhhhHH
Confidence 64 44444444 3445777777766655443
No 66
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A*
Probab=65.02 E-value=48 Score=29.70 Aligned_cols=60 Identities=10% Similarity=-0.109 Sum_probs=46.7
Q ss_pred CCCCCeEEEEeCCCHHHHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechh
Q 013869 65 GGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTED 124 (435)
Q Consensus 65 ~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 124 (435)
+++|+.|.+....+-.-..+.++|...|..++.+-|...+......++..++++++++..
T Consensus 68 l~~g~~vvv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 127 (334)
T 3tbh_A 68 LIPGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAEVILTPAA 127 (334)
T ss_dssp CCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred CCCCCeEEEEeCCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 478888766666788888888999999998876655444455567789999999999864
No 67
>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A*
Probab=63.80 E-value=34 Score=30.86 Aligned_cols=61 Identities=15% Similarity=-0.000 Sum_probs=49.8
Q ss_pred cCCCCCeEEEEeCCCHHHHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechh
Q 013869 64 AGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTED 124 (435)
Q Consensus 64 g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 124 (435)
.+++|.+..+....+-.-+.+.++|..+|..++.+-|...+......++..++++++++..
T Consensus 82 ~l~~g~~~Vv~aSsGN~g~alA~~aa~~G~~~~IvmP~~~~~~k~~~~~~~GA~Vv~v~~~ 142 (344)
T 3vc3_A 82 LITPGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAELILTDPA 142 (344)
T ss_dssp CCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred CCCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHHcCCEEEEECCC
Confidence 3577877777888888999999999999998877766656666678899999999999753
No 68
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=63.45 E-value=30 Score=36.39 Aligned_cols=102 Identities=12% Similarity=0.035 Sum_probs=72.9
Q ss_pred CCCeeEEEe---------CCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCC--HHHH
Q 013869 14 ARDSVAIRA---------DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPS--FEFV 82 (435)
Q Consensus 14 ~p~~~al~~---------~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~--~~~~ 82 (435)
.|+.+|++. ++..+|.+.+...+.......... .++.++|++....|-. ..+.
T Consensus 223 ~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~----------------~~~~~~d~~l~~~p~~h~~~~~ 286 (979)
T 3tsy_A 223 SPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPN----------------LYFHSDDVILCVLPMFHIYALN 286 (979)
T ss_dssp CTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCS----------------SCCCSSCEEEECSCSSSHHHHH
T ss_pred CccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhccc----------------ccCCCCCEEEEECchHHHHHHH
Confidence 567788773 234688888876654443322221 4788899999888865 2333
Q ss_pred HHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHH
Q 013869 83 AGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNV 132 (435)
Q Consensus 83 ~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~ 132 (435)
..+++.+..|+..+..+ ....+.+...+++.++.++...+.....+...
T Consensus 287 ~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 335 (979)
T 3tsy_A 287 SIMLCGLRVGAAILIMP-KFEINLLLELIQRCKVTVAPMVPPIVLAIAKS 335 (979)
T ss_dssp HTHHHHHHHTCEEEECS-SCCHHHHHHHHHHHTCCEEEECHHHHHHHHHC
T ss_pred HHHHHHHhcCcEEEEeC-CCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhC
Confidence 45678889999988775 45778899999999999999999877766543
No 69
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=61.84 E-value=43 Score=31.91 Aligned_cols=96 Identities=10% Similarity=0.074 Sum_probs=68.8
Q ss_pred CCCeeEEEe--C-------CcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCC-HH-HH
Q 013869 14 ARDSVAIRA--D-------QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPS-FE-FV 82 (435)
Q Consensus 14 ~p~~~al~~--~-------~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~-~~-~~ 82 (435)
.|+.+|++. . +..+|.+.+...+..+...+ ++.++|++...++-. .. ++
T Consensus 153 ~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~--------------------~~~~~d~~l~~~p~~~~~g~~ 212 (505)
T 3nyq_A 153 DDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAW--------------------QWTGEDVLVQGLPLFHVHGLV 212 (505)
T ss_dssp CTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHH--------------------TCCTTCEEEECCCTTSHHHHT
T ss_pred CCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHh--------------------CCCCCcEEEEeccHHHHHHHH
Confidence 466677763 1 24689999888777666544 667889988877754 32 23
Q ss_pred HHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHH
Q 013869 83 AGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQN 131 (435)
Q Consensus 83 ~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~ 131 (435)
..+++.+..|+.++... ....+.+...+ +.++.+++..+.....+..
T Consensus 213 ~~~~~~l~~G~~~~~~~-~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~ 259 (505)
T 3nyq_A 213 LGILGPLRRGGSVRHLG-RFSTEGAAREL-NDGATMLFGVPTMYHRIAE 259 (505)
T ss_dssp TTTHHHHHHTCEEEECS-SCCHHHHHHHH-TTTCCEEEECHHHHHHHHH
T ss_pred HHHHHHHhcCCEEEECC-CCChHHHHHHH-hhCCeEEEehHHHHHHHHH
Confidence 35788899999988775 45666677777 7799999999888776654
No 70
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=60.54 E-value=42 Score=32.59 Aligned_cols=76 Identities=16% Similarity=0.016 Sum_probs=54.7
Q ss_pred CCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhc---cCCCCCeeEEeecchhhhHHHHHHHHHHHcCCEEEEcC
Q 013869 168 RGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAW---EYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMP 244 (435)
Q Consensus 168 ~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~---~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~~~~~ 244 (435)
.++.+|++.- .-.+|++.+...+..++..+ ++.++|++...+|-+.-. +..+++++..|+..+..+
T Consensus 88 ~pd~~A~~~~---------~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~--~~~~lA~~~~G~~~vpl~ 156 (570)
T 4gr5_A 88 APDAVALLHE---------ADELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDM--VVALLAVLKAGGGYTMLD 156 (570)
T ss_dssp CTTSEEEEET---------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH--HHHHHHHHHTTCEEEECC
T ss_pred CCCCeEEECC---------CCcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHH--HHHHHHHHHHCCEEEEcC
Confidence 4567776541 23689999988877776544 788999999988876544 346899999999999997
Q ss_pred Ccch-hHHHHH
Q 013869 245 KFSV-RGIWQR 254 (435)
Q Consensus 245 ~~~~-~~~~~~ 254 (435)
...+ ..+...
T Consensus 157 ~~~~~~~l~~~ 167 (570)
T 4gr5_A 157 PQFPVERLALS 167 (570)
T ss_dssp TTSCHHHHHHH
T ss_pred CCChHHHHHHH
Confidence 6544 444444
No 71
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=57.34 E-value=62 Score=32.09 Aligned_cols=85 Identities=16% Similarity=0.135 Sum_probs=59.1
Q ss_pred CCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhc---cCCCCCeeEEeecchhhhHHHHHHHHHHHcCCEEEEcC
Q 013869 168 RGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAW---EYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMP 244 (435)
Q Consensus 168 ~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~---~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~~~~~ 244 (435)
.++.+|++... ..+| ....+|++.+...+..++..+ ++.++|++..++|-+--. +..+++++..|+..+.++
T Consensus 89 ~pd~~Al~~~~-~~~~--~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~--vva~lA~~~~Gav~vpl~ 163 (652)
T 1pg4_A 89 NGDRTAIIWEG-DDTS--QSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEA--AVAMLACARIGAVHSVIF 163 (652)
T ss_dssp HTTSEEEEEEC-SSTT--CEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHH--HHHHHHHHHHTCEEEECC
T ss_pred CCCceEEEEEc-CCCC--ceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHH--HHHHHHHHHcCcEEEecC
Confidence 36777776432 2122 345799999988887776644 788999999999886544 346899999999998886
Q ss_pred C-cchhHHHHHHHh
Q 013869 245 K-FSVRGIWQRWRE 257 (435)
Q Consensus 245 ~-~~~~~~~~~~~~ 257 (435)
. +....+...+.+
T Consensus 164 ~~~~~~~l~~~l~~ 177 (652)
T 1pg4_A 164 GGFSPEAVAGCIID 177 (652)
T ss_dssp TTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHh
Confidence 5 555555555433
No 72
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=56.87 E-value=49 Score=31.58 Aligned_cols=100 Identities=14% Similarity=-0.010 Sum_probs=69.5
Q ss_pred CCCeeEEEe---------CCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCCHH-HHH
Q 013869 14 ARDSVAIRA---------DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE-FVA 83 (435)
Q Consensus 14 ~p~~~al~~---------~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~~~-~~~ 83 (435)
.|+.+|++. ++..+|.+.+...+..+..... .++.+++++....+-+.. .+.
T Consensus 143 ~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~------------------~~~~~~~~~l~~~~~~~~~~~~ 204 (521)
T 3l8c_A 143 KGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAA------------------FDVPKQPQMLAQPPYSFDLSVM 204 (521)
T ss_dssp CTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCTT------------------TCCCSSCEEECCSCTTSGGGHH
T ss_pred CCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhccc------------------cCCCCCCeEEecCCccHHHHHH
Confidence 456777764 2346898888766554443221 266788888877776633 345
Q ss_pred HHHHHHHhCCeEEeCCCC--CCHHHHHHHHhcCCccEEEechhhHHHHHH
Q 013869 84 GVLGTWFSGCIAVPLALS--YPESELLHVMHDSDISMVLSTEDYREVLQN 131 (435)
Q Consensus 84 ~~lA~~~~G~~~v~l~~~--~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~ 131 (435)
.+++++..|+..+.++.. .....+...+.+.++.++...+.....+..
T Consensus 205 ~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 254 (521)
T 3l8c_A 205 YWAPTLALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAML 254 (521)
T ss_dssp HHHHHHHTTCEEEECCGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHT
T ss_pred HHHHHHhcCCEEEEcCHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhh
Confidence 567788889988877653 366778889999999999999987765443
No 73
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=52.78 E-value=71 Score=31.72 Aligned_cols=86 Identities=20% Similarity=0.212 Sum_probs=59.6
Q ss_pred CCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHh----ccCCCCCeeEEeecchhhhHHHHHHHHHHHcCCEEEE
Q 013869 167 QRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEA----WEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEF 242 (435)
Q Consensus 167 ~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~----~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~~~ 242 (435)
..++.+|++.... ..| ....+|++.+...+..++.. .++.++|++..++|..--. +..+++++..|+..+.
T Consensus 94 ~~pd~~Al~~~~~-~~~--~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~--v~a~lA~~~~Gav~vp 168 (663)
T 1ry2_A 94 KTPNKKAIIFEGD-EPG--QGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEA--IITLLAISRIGAIHSV 168 (663)
T ss_dssp TCTTSEEEEEECS-STT--CCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHH--HHHHHHHHHTTCEEEE
T ss_pred cCCCceEEEEEcC-CCC--ceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHH--HHHHHHHHHcCCEEEe
Confidence 3567777765422 122 23578999998877776654 4678999999999986543 3468999999999888
Q ss_pred cCC-cchhHHHHHHHh
Q 013869 243 MPK-FSVRGIWQRWRE 257 (435)
Q Consensus 243 ~~~-~~~~~~~~~~~~ 257 (435)
+++ +....+...+.+
T Consensus 169 l~~~~~~~~l~~~l~~ 184 (663)
T 1ry2_A 169 VFAGFSSNSLRDRIND 184 (663)
T ss_dssp CCTTSCHHHHHHHHHH
T ss_pred eCCCCCHHHHHHHHHh
Confidence 865 555555555433
No 74
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=48.82 E-value=72 Score=30.78 Aligned_cols=86 Identities=10% Similarity=-0.044 Sum_probs=60.8
Q ss_pred eEEeehHHHHHHHHHHHHhc---cCCCCCeeEEeecchhhhHHHHHHHHHHHcCCEEEEcCCcch--------hHHHHHH
Q 013869 187 GVVHTHKSIDAQVQMLTEAW---EYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSV--------RGIWQRW 255 (435)
Q Consensus 187 ~v~~t~~~l~~~~~~~~~~~---~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~~~~~~~~~--------~~~~~~~ 255 (435)
.-.+|++.+...+..++..+ ++.+++++..++|-+.-. +..+++++..|+..+..+...+ ......
T Consensus 47 ~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~--~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~- 123 (576)
T 3gqw_A 47 EDQLEYQTLKARAEAGAKRLLSLNLKKGDRVALIAETSSEF--VEAFFACQYAGLVAVPLAIPMGVGQRDSWSAKLQGL- 123 (576)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHHTCCCTTCEEEEECCSSHHH--HHHHHHHHHTTCEEEEECCCSSSSSHHHHHHHHHHH-
T ss_pred eeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHH--HHHHHHHHHhCCeEeecCCCCcccchhhHHHHHHHH-
Confidence 35789999988887776654 688999999998876543 3468999999999998865322 233333
Q ss_pred HhhcCCCCCccccccceeccccHHHHHHH
Q 013869 256 RESYPVNGNRAGEAITAFTGVPTMYTRLI 284 (435)
Q Consensus 256 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 284 (435)
+...++..++........+.
T Consensus 124 ---------l~~~~~~~ii~~~~~~~~~~ 143 (576)
T 3gqw_A 124 ---------LASCQPAAIITGDEWLPLVN 143 (576)
T ss_dssp ---------HHHHCCSEEEECGGGHHHHH
T ss_pred ---------HHhcCCCEEEecHHHHHHHH
Confidence 44467787777776655543
No 75
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=45.80 E-value=1.2e+02 Score=29.20 Aligned_cols=84 Identities=13% Similarity=-0.008 Sum_probs=55.3
Q ss_pred CCCCcEEEEecCCCCCCC--ceEEeehHHHHHHHHHHHHhc---cCCCCCeeEEeecchhhhHHHHHHHHHHHcCCEEEE
Q 013869 168 RGEDPALIVYTSGTTGKP--KGVVHTHKSIDAQVQMLTEAW---EYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEF 242 (435)
Q Consensus 168 ~~~~~~~i~~TSGtTG~p--K~v~~t~~~l~~~~~~~~~~~---~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~~~ 242 (435)
.++.+|++.... ..+.. ..-.+|++.+...+..++..+ +. ++|++...++-+.-. +..+++++..|+..+.
T Consensus 33 ~p~~~A~~~~~~-~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~~--~~~~lA~~~~Gav~vp 108 (562)
T 3ite_A 33 HPEWKAVEVATG-FLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIA--FAIIVGIMKSGNTYVP 108 (562)
T ss_dssp CTTSEEEEEEEC-C-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHHH--HHHHHHHHHTTCEEEE
T ss_pred CCCchhhhcccc-cccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHHH--HHHHHHHHHhCCEEEe
Confidence 466777665432 22222 235789999988887776654 45 689998888876544 3468999999999998
Q ss_pred cCCcch-hHHHHHH
Q 013869 243 MPKFSV-RGIWQRW 255 (435)
Q Consensus 243 ~~~~~~-~~~~~~~ 255 (435)
.+...+ ..+...+
T Consensus 109 l~~~~~~~~l~~~l 122 (562)
T 3ite_A 109 IEAGLPNDRKSFLL 122 (562)
T ss_dssp CCTTSCHHHHHHHH
T ss_pred cCCcCHHHHHHHHH
Confidence 876444 4443443
No 76
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=43.81 E-value=67 Score=31.63 Aligned_cols=77 Identities=9% Similarity=-0.079 Sum_probs=55.8
Q ss_pred CCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhc---cCCCCCeeEEeecchhhhHHHHHHHHHHHcCCEEEEcC
Q 013869 168 RGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAW---EYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMP 244 (435)
Q Consensus 168 ~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~---~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~~~~~ 244 (435)
.++.+|++. . .-.+|++.+...+..++..+ ++.+++++..+++-+.-+ +..+++++..|+..+..+
T Consensus 40 ~Pd~~Av~~-~--------~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~--vva~lailkaGa~~vpld 108 (620)
T 4dg8_A 40 HPHREAIRD-R--------FGSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRES--ITCLLAILLSGHHYLYID 108 (620)
T ss_dssp CTTSEEEEE-T--------TEEEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHH--HHHHHHHHHTTCEEEECC
T ss_pred CCCCeEEEc-C--------CCcCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHH--HHHHHHHHHhCCEEEeeC
Confidence 566777653 1 13689999888777776554 788999999888876443 446999999999999998
Q ss_pred CcchhHHHHHH
Q 013869 245 KFSVRGIWQRW 255 (435)
Q Consensus 245 ~~~~~~~~~~~ 255 (435)
+..+..-+..+
T Consensus 109 ~~~p~~~l~~i 119 (620)
T 4dg8_A 109 LKQPAAWNAEL 119 (620)
T ss_dssp TTSCHHHHHHH
T ss_pred ccChHHHHHHH
Confidence 76555444443
No 77
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=43.28 E-value=1e+02 Score=27.42 Aligned_cols=61 Identities=15% Similarity=0.046 Sum_probs=39.7
Q ss_pred ccCCCCCeEEEEeCCCH------HHHHHHHHH-HHhCCeEEeCCCCC------------CHHHHHHHHhcCCccEEEech
Q 013869 63 LAGGCGARIGIVAKPSF------EFVAGVLGT-WFSGCIAVPLALSY------------PESELLHVMHDSDISMVLSTE 123 (435)
Q Consensus 63 ~g~~~g~~V~i~~~~~~------~~~~~~lA~-~~~G~~~v~l~~~~------------~~~~l~~~l~~~~~~~vi~~~ 123 (435)
.-+++||+|+|++|.+. +-+-...+. -..|..++.-+.-. ..+++...+..-.+++|++..
T Consensus 7 ~~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~r 86 (327)
T 4h1h_A 7 AKLKQGDEIRIIAPSRSIGIMADNQVEIAVNRLTDMGFKVTFGEHVAEMDCMMSSSIRSRVADIHEAFNDSSVKAILTVI 86 (327)
T ss_dssp CCCCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESC
T ss_pred CCCCCCCEEEEEeCCCCcCccCHHHHHHHHHHHHhCCCEEEECcchhhccCcccCCHHHHHHHHHHHhhCCCCCEEEEcC
Confidence 47899999999999752 223333333 34577776543221 133577777888899999975
No 78
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF protein, center for structu genomics of infectious diseases, immune system; 1.50A {Bacillus anthracis} PDB: 3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Probab=43.20 E-value=1.1e+02 Score=27.42 Aligned_cols=61 Identities=20% Similarity=0.171 Sum_probs=39.7
Q ss_pred ccCCCCCeEEEEeCCCH------HHHHHHHHHH-HhCCeEEeCCCCC--------C----HHHHHHHHhcCCccEEEech
Q 013869 63 LAGGCGARIGIVAKPSF------EFVAGVLGTW-FSGCIAVPLALSY--------P----ESELLHVMHDSDISMVLSTE 123 (435)
Q Consensus 63 ~g~~~g~~V~i~~~~~~------~~~~~~lA~~-~~G~~~v~l~~~~--------~----~~~l~~~l~~~~~~~vi~~~ 123 (435)
.-+++||+|+|++|.+. +-+-...+.+ ..|..++.-.... + .+++...+..-++++|++..
T Consensus 8 ~~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~r 87 (336)
T 3sr3_A 8 KSLKYGDTIGIYSPSSPVTYTSPKRFERAKSYLLQKGFHILEGSLTGRYDYYRSGSIQERAKELNALIRNPNVSCIMSTI 87 (336)
T ss_dssp CCCCTTCEEEEECSSSCHHHHCHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHHCTTEEEEEESC
T ss_pred CCCCCCCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEEcccccccccccCCCHHHHHHHHHHHhhCCCCCEEEEcc
Confidence 47899999999999883 2233333333 3587777542211 1 23566777778889999875
No 79
>3ss7_X D-serine dehydratase; type II fold, ALFA,beta-elimination, P 5'-phosphate, lyase; HET: PLP; 1.55A {Escherichia coli} PDB: 3ss9_X* 3r0x_A* 3r0z_A
Probab=42.04 E-value=73 Score=29.85 Aligned_cols=62 Identities=8% Similarity=-0.091 Sum_probs=46.2
Q ss_pred eEEEEeCCCHHHHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHH
Q 013869 70 RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQN 131 (435)
Q Consensus 70 ~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~ 131 (435)
+..+....+-.-..+.++|.++|..++.+-|...+......++..++++++++.++.+....
T Consensus 161 ~~vv~aSsGNhg~avA~~aa~~G~~~~Ivmp~~~~~~k~~~~r~~GA~Vv~v~~~~~~a~~~ 222 (442)
T 3ss7_X 161 YSIAVGSTGNLGLSIGIMSARIGFKVTVHMSADARAWKKAKLRSHGVTVVEYEQDYGVAVEE 222 (442)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEESSCHHHHHHH
T ss_pred cEEEEECCCHHHHHHHHHHHHhCCcEEEEECCCCCHHHHHHHHHCCCEEEEECCCHHHHHHH
Confidence 45666777788888888899999888766554445556777899999999999876554433
No 80
>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis, assimilatory sulfate reduction, S plant inorganic sulfur uptake; HET: PLP; 2.40A {Arabidopsis thaliana}
Probab=41.56 E-value=89 Score=29.14 Aligned_cols=59 Identities=8% Similarity=-0.071 Sum_probs=45.9
Q ss_pred CCCCCeEEEEeCCCHHHHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEech
Q 013869 65 GGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTE 123 (435)
Q Consensus 65 ~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~ 123 (435)
+++|....+....+-.-..+.++|...|..++.+-|...+......++..++++++++.
T Consensus 171 l~~g~~~VV~aSsGNhG~AlA~aAa~~Gl~~~IvmP~~~s~~k~~~~r~~GAeVv~v~~ 229 (430)
T 4aec_A 171 ISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDP 229 (430)
T ss_dssp CCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECG
T ss_pred CCCCCcEEEEECCCHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHCCCEEEEECC
Confidence 46776666666678888888899999999887665554555567788999999999975
No 81
>4h27_A L-serine dehydratase/L-threonine deaminase; PLP dependent typeii, PLP binding, liver, lyase; HET: LLP; 1.30A {Homo sapiens} PDB: 1p5j_A* 1pwh_A* 1pwe_A*
Probab=40.59 E-value=62 Score=29.38 Aligned_cols=58 Identities=9% Similarity=-0.015 Sum_probs=42.7
Q ss_pred eEEEEeCCCHHHHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHH
Q 013869 70 RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYRE 127 (435)
Q Consensus 70 ~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~ 127 (435)
...+....+-.-..+.++|...|..++.+-|...+......++..++++++++..+.+
T Consensus 94 ~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~Vv~v~~~~~~ 151 (364)
T 4h27_A 94 AHFVCSSSGNAGMAAAYAARQLGVPATIVVPGTTPALTIERLKNEGATVKVVGELLDE 151 (364)
T ss_dssp CEEEECCSSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHTTTCEEEEECSSTTH
T ss_pred CEEEEeCCChHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHcCCEEEEECCCHHH
Confidence 3444555577778888888899988876655555556677889999999999875443
No 82
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=38.68 E-value=1.2e+02 Score=27.59 Aligned_cols=61 Identities=18% Similarity=0.141 Sum_probs=39.6
Q ss_pred ccCCCCCeEEEEeCCCH------HHHHHHHHHH-HhCCeEEeCCCCC--------C----HHHHHHHHhcCCccEEEech
Q 013869 63 LAGGCGARIGIVAKPSF------EFVAGVLGTW-FSGCIAVPLALSY--------P----ESELLHVMHDSDISMVLSTE 123 (435)
Q Consensus 63 ~g~~~g~~V~i~~~~~~------~~~~~~lA~~-~~G~~~v~l~~~~--------~----~~~l~~~l~~~~~~~vi~~~ 123 (435)
--+++||+|+|++|.+. +-+-...+.+ ..|..++.-+... + .+++...+..-++++|++..
T Consensus 38 ~~Lk~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~af~Dp~i~aI~~~r 117 (371)
T 3tla_A 38 APLAVGDTIGFFSSSAPATVTAKNRFFRGVEFLQRKGFKLVSGKLTGKTDFYRSGTIKERAQEFNELVYNPDITCIMSTI 117 (371)
T ss_dssp CCCCTTCEEEEECSSCCHHHHTHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHTCTTEEEEEESC
T ss_pred CCCCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEcc
Confidence 37899999999999873 2233333333 3588777553221 1 23566677777889999975
No 83
>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*
Probab=38.62 E-value=1.1e+02 Score=27.23 Aligned_cols=58 Identities=9% Similarity=0.074 Sum_probs=41.3
Q ss_pred ccCCCCCeEEEEeCCCHHHHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEech
Q 013869 63 LAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTE 123 (435)
Q Consensus 63 ~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~ 123 (435)
+++++|++|+|+..-+.-.+++.+|....|+.++-+... +++ ..+.++.+++.++...
T Consensus 159 ~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~--~~r-~~~~~~~Ga~~~i~~~ 216 (348)
T 4eez_A 159 SGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDIN--QDK-LNLAKKIGADVTINSG 216 (348)
T ss_dssp HTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESC--HHH-HHHHHHTTCSEEEEC-
T ss_pred cCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECc--HHH-hhhhhhcCCeEEEeCC
Confidence 588999999999876677777777776667766655433 333 4567788888887654
No 84
>3l6b_A Serine racemase; pyridoxal phosphate, PLP, isomerase; HET: PLP; 1.50A {Homo sapiens} SCOP: c.79.1.0 PDB: 3l6r_A* 3hmk_A* 3l6c_A*
Probab=37.24 E-value=95 Score=27.88 Aligned_cols=57 Identities=9% Similarity=-0.092 Sum_probs=41.7
Q ss_pred EEEeCCCHHHHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHH
Q 013869 72 GIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREV 128 (435)
Q Consensus 72 ~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~ 128 (435)
.+....+-.-..+.++|...|..++.+-|...+......++..++++++++.++.+.
T Consensus 79 vv~~SsGNhg~a~A~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~v~~~~~~~ 135 (346)
T 3l6b_A 79 VVTHSSGNHGQALTYAAKLEGIPAYIVVPQTAPDCKKLAIQAYGASIVYCEPSDESR 135 (346)
T ss_dssp EEEECSSHHHHHHHHHHHHTTCCEEEEEETTSCHHHHHHHHHTTCEEEEECSSHHHH
T ss_pred EEEeCCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCCHHHH
Confidence 333455777788888899999887766554455556778899999999998765443
No 85
>2rkb_A Serine dehydratase-like; PLP bound enzyme, enzyme found in human cells, lyase, pyridoxal phosphate; HET: PLP; 2.80A {Homo sapiens}
Probab=35.20 E-value=1e+02 Score=27.13 Aligned_cols=57 Identities=9% Similarity=0.042 Sum_probs=40.8
Q ss_pred EEEeCCCHHHHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHH
Q 013869 72 GIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREV 128 (435)
Q Consensus 72 ~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~ 128 (435)
.+....+-.-..+.++|...|..++.+-|...+......++..++++++++.++.+.
T Consensus 57 vv~~ssGN~g~alA~~a~~~G~~~~i~~p~~~~~~k~~~~~~~Ga~V~~~~~~~~~~ 113 (318)
T 2rkb_A 57 LVCSSGGNAGIAAAYAARKLGIPATIVLPESTSLQVVQRLQGEGAEVQLTGKVWDEA 113 (318)
T ss_dssp EEECCCSHHHHHHHHHHHHHTCCEEEEECTTCCHHHHHHHHHTTCEEEECCSSHHHH
T ss_pred EEEECCchHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHhcCCEEEEECCCHHHH
Confidence 334445777777788888999888766554444556778899999999998765443
No 86
>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A
Probab=34.64 E-value=1.3e+02 Score=26.98 Aligned_cols=60 Identities=12% Similarity=-0.046 Sum_probs=40.4
Q ss_pred ccCCCCCeEEEEeCCC-HHHHHHHHHHHHhCCeEE-eCCCCCCHHHHHHHHhcCCccEEEech
Q 013869 63 LAGGCGARIGIVAKPS-FEFVAGVLGTWFSGCIAV-PLALSYPESELLHVMHDSDISMVLSTE 123 (435)
Q Consensus 63 ~g~~~g~~V~i~~~~~-~~~~~~~lA~~~~G~~~v-~l~~~~~~~~l~~~l~~~~~~~vi~~~ 123 (435)
+++++|++|+|....+ +-.+++.+|- ..|+..+ .....-..++....+++.+++.++...
T Consensus 163 ~~~~~g~~VlV~Ga~G~vG~~aiqlak-~~Ga~vi~~~~~~~~~~~~~~~~~~lGa~~vi~~~ 224 (357)
T 1zsy_A 163 EQLQPGDSVIQNASNSGVGQAVIQIAA-ALGLRTINVVRDRPDIQKLSDRLKSLGAEHVITEE 224 (357)
T ss_dssp SCCCTTCEEEESSTTSHHHHHHHHHHH-HHTCEEEEEECCCSCHHHHHHHHHHTTCSEEEEHH
T ss_pred hccCCCCEEEEeCCcCHHHHHHHHHHH-HcCCEEEEEecCccchHHHHHHHHhcCCcEEEecC
Confidence 4789999999998755 6666666665 5687544 334433334445667789999888543
No 87
>4e5s_A MCCFLIKE protein (BA_5613); structural genomics, center for structural genomi infectious diseases, csgid, serine peptidase S66; 1.95A {Bacillus anthracis}
Probab=34.57 E-value=1.3e+02 Score=26.95 Aligned_cols=61 Identities=13% Similarity=0.061 Sum_probs=39.8
Q ss_pred ccCCCCCeEEEEeCCCH------HHHHHHHHHH-HhCCeEEeCCCCC--------C----HHHHHHHHhcCCccEEEech
Q 013869 63 LAGGCGARIGIVAKPSF------EFVAGVLGTW-FSGCIAVPLALSY--------P----ESELLHVMHDSDISMVLSTE 123 (435)
Q Consensus 63 ~g~~~g~~V~i~~~~~~------~~~~~~lA~~-~~G~~~v~l~~~~--------~----~~~l~~~l~~~~~~~vi~~~ 123 (435)
--+++||+|+|++|.+. +-+-...+.+ ..|..++.-+.-. + .+++...+..-++++|++..
T Consensus 7 ~~L~~GD~I~ivaPS~~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~r 86 (331)
T 4e5s_A 7 TKLKKGDEIRVISPSCSLSIVSTENRRLAVKRLTELGFHVTFSTHAEEIDRFASSSISSRVQDLHEAFRDPNVKAILTTL 86 (331)
T ss_dssp CCCCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESC
T ss_pred CCCCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEcc
Confidence 36899999999999874 2233333333 3587777543211 1 23566677778889999975
No 88
>1p5j_A L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo sapiens} SCOP: c.79.1.1 PDB: 1pwh_A* 1pwe_A*
Probab=33.53 E-value=1.1e+02 Score=27.84 Aligned_cols=58 Identities=9% Similarity=-0.025 Sum_probs=41.5
Q ss_pred EEEEeCCCHHHHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHH
Q 013869 71 IGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREV 128 (435)
Q Consensus 71 V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~ 128 (435)
..+....+-.-..+.++|...|..++.+-|...+......++..++++++++.++.+.
T Consensus 95 ~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~~~~a 152 (372)
T 1p5j_A 95 HFVCSSAGNAGMAAAYAARQLGVPATIVVPGTTPALTIERLKNEGATCKVVGELLDEA 152 (372)
T ss_dssp EEEECCSSHHHHHHHHHHHHHTCCEEEEECTTCCHHHHHHHHHTTCEEEECCSCHHHH
T ss_pred EEEEeCCCHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHhcCCEEEEECCCHHHH
Confidence 3444445777777788889999888766554444556678899999999998755443
No 89
>4d9i_A Diaminopropionate ammonia-lyase; fold type II PLP-dependent enzyme, tryptophan synthase beta like PLP-dependent enzymes superfamily; HET: IT1; 2.00A {Escherichia coli} PDB: 4d9g_A* 4d9n_A* 4d9k_A* 4d9m_A*
Probab=32.93 E-value=1.4e+02 Score=27.36 Aligned_cols=59 Identities=8% Similarity=-0.019 Sum_probs=44.0
Q ss_pred EEEeCCCHHHHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHH
Q 013869 72 GIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQ 130 (435)
Q Consensus 72 ~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 130 (435)
.+....+-.-..+.++|...|..++.+-|...+......++..++++++++.++.+...
T Consensus 115 vv~aSsGNhg~a~A~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~Vv~v~~~~~~a~~ 173 (398)
T 4d9i_A 115 FATTTDGNHGRGVAWAAQQLGQNAVIYMPKGSAQERVDAILNLGAECIVTDMNYDDTVR 173 (398)
T ss_dssp EEEECSSHHHHHHHHHHHHHTCEEEEEECTTCCHHHHHHHHTTTCEEEECSSCHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHcCCCEEEEEeCCCCHHHHHHHHHcCCEEEEECCCHHHHHH
Confidence 34466677788888889999998876655555555677889999999999986655433
No 90
>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba histolytica} PDB: 3bm5_A*
Probab=32.83 E-value=2.4e+02 Score=25.09 Aligned_cols=59 Identities=14% Similarity=-0.085 Sum_probs=41.8
Q ss_pred CCCCCeEEEEeCCCHHHHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechh
Q 013869 65 GGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTED 124 (435)
Q Consensus 65 ~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 124 (435)
+++|+.|... ..+-.-..+.++|...|..++.+-|...+......++..++++++++.+
T Consensus 75 ~~~g~~vv~a-SsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 133 (343)
T 2pqm_A 75 LKPGMEIIES-TSGNTGIALCQAGAVFGYRVNIAMPSTMSVERQMIMKAFGAELILTEGK 133 (343)
T ss_dssp SCTTCEEEEE-CSSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred CCCCCEEEEE-CCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 3566655544 4467777777888889988776655434445567889999999999863
No 91
>2ayi_A Aminopeptidase T; metallopeptidase, hydrolase; 3.70A {Thermus thermophilus} SCOP: e.60.1.1
Probab=32.78 E-value=87 Score=28.98 Aligned_cols=53 Identities=9% Similarity=-0.051 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCC--HHHHHHHHHHHHhCCeEEeCC
Q 013869 32 LASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPS--FEFVAGVLGTWFSGCIAVPLA 99 (435)
Q Consensus 32 l~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~--~~~~~~~lA~~~~G~~~v~l~ 99 (435)
+..+.+++|..+.+.+ ..+++|+.|.|..+.. ...-.+.-++..+|+.++.+.
T Consensus 4 ~~~~l~k~A~~~v~~~---------------~~lq~Ge~vlI~~~~~~~~l~r~l~~~a~~~Ga~~v~v~ 58 (408)
T 2ayi_A 4 FKRNLEKLAELAIRVG---------------LNLEKGQEVIATAPIEAVDFVRLLAEKAYREGASLFTVI 58 (408)
T ss_dssp CHHHHHHHHHHHHHTT---------------TCCCTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHHHHHHHHhC---------------cCCCCCCEEEEEECCchHHHHHHHHHHHHHcCCceEEEE
Confidence 3567788998888865 4889999999999866 333445556777898877654
No 92
>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism, cysteine biosynthesis, transferase; HET: LLP; 1.80A {Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A
Probab=32.53 E-value=2.5e+02 Score=24.48 Aligned_cols=59 Identities=10% Similarity=-0.115 Sum_probs=42.6
Q ss_pred CCCCCeEEEEeCCCHHHHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechh
Q 013869 65 GGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTED 124 (435)
Q Consensus 65 ~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 124 (435)
+++|+.|.. ...+-.-..+.++|...|..++.+-|...+......++..++++++++.+
T Consensus 64 ~~~g~~vv~-assGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~ 122 (313)
T 2q3b_A 64 IKPDTIILE-PTSGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAYGAELILTPGA 122 (313)
T ss_dssp CCTTCEEEE-ECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred CCCCCEEEE-eCCCHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHCCCEEEEeCCC
Confidence 356665544 66677777788888899998876655434444566788999999999863
No 93
>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}
Probab=30.88 E-value=1.4e+02 Score=26.11 Aligned_cols=56 Identities=13% Similarity=0.039 Sum_probs=38.4
Q ss_pred ccCCCCCeEEEEeCCC-HHHHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEech
Q 013869 63 LAGGCGARIGIVAKPS-FEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTE 123 (435)
Q Consensus 63 ~g~~~g~~V~i~~~~~-~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~ 123 (435)
+++++|++|+|....+ +-.+++.+| ...|+.++.+. +.++ ...+++.+++.++...
T Consensus 148 ~~~~~g~~vlV~Ga~G~vG~~a~q~a-~~~Ga~vi~~~---~~~~-~~~~~~lGa~~~i~~~ 204 (321)
T 3tqh_A 148 AEVKQGDVVLIHAGAGGVGHLAIQLA-KQKGTTVITTA---SKRN-HAFLKALGAEQCINYH 204 (321)
T ss_dssp TTCCTTCEEEESSTTSHHHHHHHHHH-HHTTCEEEEEE---CHHH-HHHHHHHTCSEEEETT
T ss_pred cCCCCCCEEEEEcCCcHHHHHHHHHH-HHcCCEEEEEe---ccch-HHHHHHcCCCEEEeCC
Confidence 5899999999997555 555555555 46788766553 3444 5567778888776543
No 94
>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A*
Probab=30.05 E-value=2.8e+02 Score=24.29 Aligned_cols=60 Identities=12% Similarity=-0.018 Sum_probs=43.8
Q ss_pred CCCCCeEEEEeCCCHHHHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechh
Q 013869 65 GGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTED 124 (435)
Q Consensus 65 ~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 124 (435)
+++|....+....+-.-..+.++|...|..++.+-|...+......++..++++++++.+
T Consensus 63 ~~~~~~~vv~assGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 122 (322)
T 1z7w_A 63 IKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPA 122 (322)
T ss_dssp CCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred CCCCCCEEEEeCCCHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHcCCEEEEeCCC
Confidence 456654444566778888888888999998877655434445567889999999999864
No 95
>2jwk_A Protein TOLR; periplasmic domain, membrane, inner membrane, protein transport, transmembrane, transport, membrane protein; NMR {Haemophilus influenzae} PDB: 2jwl_A
Probab=30.01 E-value=68 Score=20.88 Aligned_cols=36 Identities=8% Similarity=0.118 Sum_probs=26.9
Q ss_pred HHHHHHHhcccCCCeeEEEeCCcccCHHHHHHHHHH
Q 013869 3 VFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALR 38 (435)
Q Consensus 3 i~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~ 38 (435)
+...|......+|+.+.++..++...|+.+.+-...
T Consensus 32 L~~~l~~~~~~~~~~~V~I~aD~~~~y~~vv~vmd~ 67 (74)
T 2jwk_A 32 VTQLSRQEFDKDNNTLFLVGGAKEVPYEEVIKALNL 67 (74)
T ss_dssp HHHHHHHHHHHCTTCCEEEEECTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCceEEEEcCCCCCHHHHHHHHHH
Confidence 345566666778999999999999999988654443
No 96
>3aey_A Threonine synthase; PLP, pyridoxal phosphate, lyase; 1.92A {Thermus thermophilus} PDB: 1uin_A* 1uim_A* 3aex_A* 1v7c_A
Probab=29.31 E-value=1.2e+02 Score=27.16 Aligned_cols=59 Identities=7% Similarity=-0.050 Sum_probs=41.0
Q ss_pred eEEEEeCCCHHHHHHHHHHHHhCCeEEeCCCCC-CHHHHHHHHhcCCccEEEechhhHHH
Q 013869 70 RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSY-PESELLHVMHDSDISMVLSTEDYREV 128 (435)
Q Consensus 70 ~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~-~~~~l~~~l~~~~~~~vi~~~~~~~~ 128 (435)
...+....+-.-..+.++|...|..++.+-|.. ........++..++++++++.++.+.
T Consensus 78 ~~vv~~SsGN~g~alA~~a~~~G~~~~iv~p~~~~~~~k~~~~~~~GA~V~~v~~~~~~~ 137 (351)
T 3aey_A 78 QAVACASTGNTAASAAAYAARAGILAIVVLPAGYVALGKVAQSLVHGARIVQVEGNFDDA 137 (351)
T ss_dssp SEEEESCSSHHHHHHHHHHHHHTSEEEEEEETTCSCHHHHHHHHHTTCEEEEEESCHHHH
T ss_pred CEEEEeCCCHHHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHcCCEEEEECCCHHHH
Confidence 344445566677777788889999877665543 33444578899999999998765443
No 97
>2d1f_A Threonine synthase; amino acid synthesis, pyridoxal-5'-phosphate, PLP, lyase; HET: PLP; 2.50A {Mycobacterium tuberculosis}
Probab=29.08 E-value=1.5e+02 Score=26.69 Aligned_cols=59 Identities=8% Similarity=-0.042 Sum_probs=41.3
Q ss_pred eEEEEeCCCHHHHHHHHHHHHhCCeEEeCCCCC-CHHHHHHHHhcCCccEEEechhhHHH
Q 013869 70 RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSY-PESELLHVMHDSDISMVLSTEDYREV 128 (435)
Q Consensus 70 ~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~-~~~~l~~~l~~~~~~~vi~~~~~~~~ 128 (435)
...+....+-.-..+.++|...|..++.+-|.. ........++..++++++++.++.+.
T Consensus 86 ~~vv~aSsGN~g~alA~~a~~~G~~~~i~~p~~~~~~~k~~~~~~~GA~v~~v~~~~~~~ 145 (360)
T 2d1f_A 86 RAVLCASTGNTSASAAAYAARAGITCAVLIPQGKIAMGKLAQAVMHGAKIIQIDGNFDDC 145 (360)
T ss_dssp SEEEECCSSHHHHHHHHHHHHHTCEEEEEECSSCCCHHHHHHHHHTTCEEEEBSSCHHHH
T ss_pred CEEEEeCCcHHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHHHcCCEEEEECCCHHHH
Confidence 344445566667777788889999887765543 33444678899999999998765443
No 98
>1zjc_A Aminopeptidase AMPS; metallopeptidase, hydrolase; 1.80A {Staphylococcus aureus subsp} SCOP: e.60.1.1
Probab=28.79 E-value=97 Score=28.76 Aligned_cols=53 Identities=11% Similarity=-0.029 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCC--HHHHHHHHHHHHhCCeEEeCC
Q 013869 32 LASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPS--FEFVAGVLGTWFSGCIAVPLA 99 (435)
Q Consensus 32 l~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~--~~~~~~~lA~~~~G~~~v~l~ 99 (435)
+..+.+++|..|.+.+ ..+++|+.|.|..+-. ...-.+.-++..+|+.++.+.
T Consensus 7 ~~~~l~k~A~~lV~~~---------------~~lq~Ge~VlI~~~~~~~~l~r~l~~~a~~~Ga~~v~v~ 61 (418)
T 1zjc_A 7 YKEKLQQYAELLVKVG---------------MNVQPKQPVFIRSSVETLELTHLIVEEAYHCGASDVRVV 61 (418)
T ss_dssp HHHHHHHHHHHHHHTT---------------TCCCTTCCEEEEEETTCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred hHHHHHHHHHHHHHhC---------------cCCCCCCEEEEEECCchHHHHHHHHHHHHHcCCceEEEE
Confidence 4567888999998865 4889999999998865 333445556777788777654
No 99
>2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; 1.90A {Geobacillus kaustophilus}
Probab=28.03 E-value=3e+02 Score=23.92 Aligned_cols=58 Identities=14% Similarity=0.005 Sum_probs=41.2
Q ss_pred CCCCeEEEEeCCCHHHHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechh
Q 013869 66 GCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTED 124 (435)
Q Consensus 66 ~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 124 (435)
++|+.|.. ...+-.-..+.++|...|..++.+-|...+......++..++++++++.+
T Consensus 63 ~~g~~vv~-assGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~ 120 (308)
T 2egu_A 63 KPGDTIVE-PTSGNTGIGLAMVAAAKGYKAVLVMPDTMSLERRNLLRAYGAELVLTPGA 120 (308)
T ss_dssp CTTCEEEE-ECCHHHHHHHHHHHHHHTCEEEEEEESCSCHHHHHHHHHTTCEEEEECGG
T ss_pred CCCCEEEE-eCCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECCC
Confidence 56665544 55567777778888889998876644433444566789999999999864
No 100
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=27.71 E-value=1.4e+02 Score=32.37 Aligned_cols=65 Identities=9% Similarity=-0.052 Sum_probs=49.4
Q ss_pred EeehHHHHHHHHHHHHhc---cCCCCCeeEEeecchhhhHHHHHHHHHHHcCCEEEEcCCcchhHHHHHH
Q 013869 189 VHTHKSIDAQVQMLTEAW---EYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRW 255 (435)
Q Consensus 189 ~~t~~~l~~~~~~~~~~~---~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~ 255 (435)
.+|++.+...+..++..+ ++.+++++..+++-+.-+ +..+++++.+|+..+..++..+.+-+..+
T Consensus 489 ~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~--vv~~lailkaG~~~vpldp~~p~~rl~~i 556 (1304)
T 2vsq_A 489 TLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLEL--VIGILGVLKAGAAYLPVDPKLPEDRISYM 556 (1304)
T ss_dssp EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHH--HHHHHHHHHTTCEEEECCTTSCHHHHHHH
T ss_pred eEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCCHHH--HHHHHHHHHHCCEEEEECCCCHHHHHHHH
Confidence 689999888777776544 788999999888876443 44799999999999999876555444443
No 101
>2zsj_A Threonine synthase; PLP dependent enzyme, lyase; HET: PLP; 1.80A {Aquifex aeolicus}
Probab=27.08 E-value=1.3e+02 Score=27.04 Aligned_cols=59 Identities=12% Similarity=-0.073 Sum_probs=41.2
Q ss_pred eEEEEeCCCHHHHHHHHHHHHhCCeEEeCCCCC-CHHHHHHHHhcCCccEEEechhhHHH
Q 013869 70 RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSY-PESELLHVMHDSDISMVLSTEDYREV 128 (435)
Q Consensus 70 ~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~-~~~~l~~~l~~~~~~~vi~~~~~~~~ 128 (435)
...+....+-.-..+.++|...|..++.+-|.. ........++..++++++++.++.+.
T Consensus 80 ~~vv~~SsGN~g~alA~~a~~~G~~~~i~~p~~~~~~~k~~~~~~~GA~v~~v~~~~~~~ 139 (352)
T 2zsj_A 80 RAVICASTGNTSASAAAYAARAGLRAYVLLPKGAVAIGKLSQAMIYGAKVLAIQGTFDDA 139 (352)
T ss_dssp CEEEECCSSHHHHHHHHHHHHHTCEEEEEEEGGGCCHHHHHHHHHTTCEEEEESSCHHHH
T ss_pred CEEEEeCCchHHHHHHHHHHhcCCcEEEEECCCCCCHHHHHHHHHcCCEEEEECCCHHHH
Confidence 344445566677777788889999887665542 33344568899999999998765443
No 102
>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}
Probab=26.42 E-value=3.3e+02 Score=23.99 Aligned_cols=53 Identities=15% Similarity=0.022 Sum_probs=35.8
Q ss_pred ccCCCCCeEEEEeCCC-HHHHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEE
Q 013869 63 LAGGCGARIGIVAKPS-FEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVL 120 (435)
Q Consensus 63 ~g~~~g~~V~i~~~~~-~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi 120 (435)
+++++|++|+|....+ +-.+++.+| ...|+.++.+ .+++++. .+++.+++.+.
T Consensus 146 ~~~~~g~~VlV~Ga~g~iG~~~~q~a-~~~Ga~Vi~~---~~~~~~~-~~~~lGa~~i~ 199 (343)
T 3gaz_A 146 AQVQDGQTVLIQGGGGGVGHVAIQIA-LARGARVFAT---ARGSDLE-YVRDLGATPID 199 (343)
T ss_dssp TCCCTTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEE---ECHHHHH-HHHHHTSEEEE
T ss_pred cCCCCCCEEEEecCCCHHHHHHHHHH-HHCCCEEEEE---eCHHHHH-HHHHcCCCEec
Confidence 5889999999998555 555555555 4678876655 2455544 45777888743
No 103
>1zl0_A Hypothetical protein PA5198; structural genomics, PSI, PROT structure initiative, midwest center for structural genomic unknown function; HET: TLA PEG; 1.10A {Pseudomonas aeruginosa} SCOP: c.8.10.1 c.23.16.7 PDB: 1zrs_A 2aum_A 2aun_A
Probab=26.15 E-value=2.8e+02 Score=24.45 Aligned_cols=61 Identities=15% Similarity=0.088 Sum_probs=39.0
Q ss_pred ccCCCCCeEEEEeCCCH---HHHHHHHHHH-HhCCeEEeCCCCC--------C----HHHHHHHHhcCCccEEEech
Q 013869 63 LAGGCGARIGIVAKPSF---EFVAGVLGTW-FSGCIAVPLALSY--------P----ESELLHVMHDSDISMVLSTE 123 (435)
Q Consensus 63 ~g~~~g~~V~i~~~~~~---~~~~~~lA~~-~~G~~~v~l~~~~--------~----~~~l~~~l~~~~~~~vi~~~ 123 (435)
..+++||+|+|++|.+. +.+-...+.+ ..|..++.-+.-. + .+++...+..-++++|++..
T Consensus 12 ~~L~~Gd~I~ivaPSs~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~r 88 (311)
T 1zl0_A 12 TWQPIDGRVALIAPASAIATDVLEATLRQLEVHGVDYHLGRHVEARYRYLAGTVEQRLEDLHNAFDMPDITAVWCLR 88 (311)
T ss_dssp CCCCCCSEEEEECCSBCCCHHHHHHHHHHHHHTTCCEEECTTTTCCBTTBSSCHHHHHHHHHHHHHSTTEEEEEESC
T ss_pred ccCCCcCEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEECccccccccccCCCHHHHHHHHHHHHhCCCCCEEEEcc
Confidence 47899999999999872 2232233333 3477776543211 2 23567777778889999975
No 104
>2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis, transferase, ENZ kinetics, enzymatic sythesis of novel compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB: 2bhs_A* 2bht_A* 2jc3_A*
Probab=25.93 E-value=2.4e+02 Score=24.54 Aligned_cols=58 Identities=14% Similarity=-0.039 Sum_probs=42.0
Q ss_pred CCCCCeEEEEeCCCHHHHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEech
Q 013869 65 GGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTE 123 (435)
Q Consensus 65 ~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~ 123 (435)
+++|+.|... ..+-.-..+.++|...|..++.+-|...+......++..++++++++.
T Consensus 58 ~~~g~~vv~~-ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~ 115 (303)
T 2v03_A 58 IKPGDVLIEA-TSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTK 115 (303)
T ss_dssp CCTTCEEEEE-CSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECT
T ss_pred CCCCCEEEEE-CCcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCEEEEECC
Confidence 3566665554 356777777888889999887765544444456788999999999986
No 105
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=25.87 E-value=2.5e+02 Score=22.80 Aligned_cols=56 Identities=7% Similarity=-0.022 Sum_probs=43.6
Q ss_pred CCeEEEEeCCC----HHHHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEech
Q 013869 68 GARIGIVAKPS----FEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTE 123 (435)
Q Consensus 68 g~~V~i~~~~~----~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~ 123 (435)
+.+|.+....+ +-..++...+-..|..++.+..+.+.+++...+++.++++|..+.
T Consensus 88 ~~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~~vp~~~l~~~~~~~~~d~v~lS~ 147 (210)
T 1y80_A 88 VGKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGVDIEPGKFVEAVKKYQPDIVGMSA 147 (210)
T ss_dssp CCEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCSSBCHHHHHHHHHHHCCSEEEEEC
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEec
Confidence 33566555442 555556666667899999999999999999999999999999875
No 106
>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} SCOP: c.79.1.0 PDB: 3fgp_A* 3dki_A* 3dwi_A*
Probab=24.92 E-value=3.5e+02 Score=23.74 Aligned_cols=58 Identities=10% Similarity=0.020 Sum_probs=43.4
Q ss_pred CCCCCeEEEEeCCCHHHHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEech
Q 013869 65 GGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTE 123 (435)
Q Consensus 65 ~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~ 123 (435)
+++++.|.- ...+-.-..+.++|...|..++.+-|...+......++..++++++++.
T Consensus 70 l~~~~~vv~-aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~ 127 (325)
T 3dwg_A 70 LRPGATILE-PTSGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQIIFSAA 127 (325)
T ss_dssp CCTTCEEEE-ECSSHHHHHHHHHHHHHTCEEEEEEESSSCHHHHHHHHHHTCEEEEECS
T ss_pred CCCCCEEEE-eCCcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHCCCEEEEECC
Confidence 466676654 4557788888888899999887665544445556788999999999986
No 107
>1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1 PDB: 2eco_A* 2ecq_A* 2efy_A*
Probab=24.50 E-value=3.4e+02 Score=23.44 Aligned_cols=60 Identities=10% Similarity=-0.021 Sum_probs=41.6
Q ss_pred CCCCCe-EEEEeCCCHHHHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechh
Q 013869 65 GGCGAR-IGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTED 124 (435)
Q Consensus 65 ~~~g~~-V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 124 (435)
+++|+. ..+....+-.-..+.++|...|..++.+-|...+......++..++++++++.+
T Consensus 57 ~~~g~~~~vv~assGN~g~a~A~~a~~~G~~~~i~~p~~~~~~k~~~~~~~Ga~V~~~~~~ 117 (304)
T 1ve1_A 57 LRPGSGQVIVEPTSGNTGIGLAMIAASRGYRLILTMPAQMSEERKRVLKAFGAELVLTDPE 117 (304)
T ss_dssp CCTTSCCEEEESCCSHHHHHHHHHHHHHTCEEEEEEETTCCHHHHHHHHHTTCEEEEECTT
T ss_pred CCCCCccEEEEeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEECCC
Confidence 456662 223355567777778888899988876644433445567889999999999875
No 108
>1y7l_A O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase; X-RAY crystallography, sulfhydrylase; HET: LLP; 1.55A {Haemophilus influenzae} SCOP: c.79.1.1 PDB: 3iqg_X* 3iqh_X* 3iqi_X* 1fcj_A* 1oas_A* 1d6s_A*
Probab=23.91 E-value=3.6e+02 Score=23.47 Aligned_cols=58 Identities=14% Similarity=-0.036 Sum_probs=41.4
Q ss_pred CCCCeEEEEeCCCHHHHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechh
Q 013869 66 GCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTED 124 (435)
Q Consensus 66 ~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 124 (435)
++|+.|.- ...+-.-..+.++|...|..++.+-|...+......++..++++++++.+
T Consensus 60 ~~~~~vv~-~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~ 117 (316)
T 1y7l_A 60 TKGKEIVD-ATSGNTGIALAYVAAARGYKITLTMPETMSLERKRLLCGLGVNLVLTEGA 117 (316)
T ss_dssp CTTCEEEE-SCCSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred CCCCEEEE-eCCcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCEEEEeCCC
Confidence 55655444 44567777788888899988766644434445567889999999999875
No 109
>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}
Probab=23.76 E-value=2.9e+02 Score=25.16 Aligned_cols=55 Identities=13% Similarity=0.103 Sum_probs=38.0
Q ss_pred cCCCCCeEEEEeCCCHHHHHHHHHHHHhCC-eEEeCCCCCCHHHHHHHHhcCCccEEEec
Q 013869 64 AGGCGARIGIVAKPSFEFVAGVLGTWFSGC-IAVPLALSYPESELLHVMHDSDISMVLST 122 (435)
Q Consensus 64 g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~-~~v~l~~~~~~~~l~~~l~~~~~~~vi~~ 122 (435)
++++|++|+|+..-.+-.+++.+|- ..|+ .++.+... +++ ..++++.+++.++..
T Consensus 210 ~~~~g~~VlV~GaG~vG~~aiqlak-~~Ga~~Vi~~~~~--~~~-~~~~~~lGa~~vi~~ 265 (404)
T 3ip1_A 210 GIRPGDNVVILGGGPIGLAAVAILK-HAGASKVILSEPS--EVR-RNLAKELGADHVIDP 265 (404)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHH-HTTCSEEEEECSC--HHH-HHHHHHHTCSEEECT
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHH-HcCCCEEEEECCC--HHH-HHHHHHcCCCEEEcC
Confidence 7899999999987446666666665 6788 56655433 333 445677888888764
No 110
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*
Probab=23.41 E-value=1.5e+02 Score=28.44 Aligned_cols=58 Identities=7% Similarity=-0.036 Sum_probs=44.2
Q ss_pred CCCCCeEEEEeCCCHHHHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEech
Q 013869 65 GGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTE 123 (435)
Q Consensus 65 ~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~ 123 (435)
+++|+.|.- ...+-.-..+.+||...|..++.+-|..........++..+++++++..
T Consensus 110 ~~~g~~vv~-~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~ 167 (527)
T 3pc3_A 110 LKPGYTIIE-PTSGNTGIGLAMACAVKGYKCIIVMPEKMSNEKVSALRTLGAKIIRTPT 167 (527)
T ss_dssp CCTTCEEEE-ECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECT
T ss_pred CCCCCEEEE-eCCCHHHHHHHHHHHHhCCeEEEEEcCCCCHHHHHHHHHCCCEEEEeCC
Confidence 467777654 5667788888889999999887665554445567788999999999975
No 111
>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}
Probab=23.35 E-value=3e+02 Score=24.56 Aligned_cols=55 Identities=7% Similarity=0.032 Sum_probs=37.5
Q ss_pred ccCCCCCeEEEEeCCCHHHHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEe
Q 013869 63 LAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLS 121 (435)
Q Consensus 63 ~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~ 121 (435)
+++++|++|+|...-.+-.+++.+|- ..|+.++.+.. +++++ ..+++.+++.++.
T Consensus 185 ~~~~~g~~VlV~G~G~vG~~a~qla~-~~Ga~Vi~~~~--~~~~~-~~~~~lGa~~vi~ 239 (363)
T 3uog_A 185 GHLRAGDRVVVQGTGGVALFGLQIAK-ATGAEVIVTSS--SREKL-DRAFALGADHGIN 239 (363)
T ss_dssp TCCCTTCEEEEESSBHHHHHHHHHHH-HTTCEEEEEES--CHHHH-HHHHHHTCSEEEE
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHH-HcCCEEEEEec--CchhH-HHHHHcCCCEEEc
Confidence 58899999999984335555555554 67887666543 34444 3467788888876
No 112
>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}
Probab=23.20 E-value=1.6e+02 Score=25.68 Aligned_cols=53 Identities=6% Similarity=-0.014 Sum_probs=37.2
Q ss_pred ccCCCCCeEEEEeCCCHHHHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEE
Q 013869 63 LAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVL 120 (435)
Q Consensus 63 ~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi 120 (435)
+++++|++|+|...-.+-.+++.+|- ..|+.++.+. + ++++ ..+++.+++.++
T Consensus 138 ~~~~~g~~VlV~GaG~vG~~a~qlak-~~Ga~Vi~~~-~--~~~~-~~~~~lGa~~v~ 190 (315)
T 3goh_A 138 IPLTKQREVLIVGFGAVNNLLTQMLN-NAGYVVDLVS-A--SLSQ-ALAAKRGVRHLY 190 (315)
T ss_dssp SCCCSCCEEEEECCSHHHHHHHHHHH-HHTCEEEEEC-S--SCCH-HHHHHHTEEEEE
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHH-HcCCEEEEEE-C--hhhH-HHHHHcCCCEEE
Confidence 58899999999999446666666654 5688776665 2 2332 345678888888
No 113
>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}
Probab=23.08 E-value=3.1e+02 Score=24.62 Aligned_cols=57 Identities=5% Similarity=0.103 Sum_probs=38.5
Q ss_pred ccCCCCCeEEEEeCCCHHHHHHHHHHHHhCC-eEEeCCCCCCHHHHHHHHhcCCccEEEech
Q 013869 63 LAGGCGARIGIVAKPSFEFVAGVLGTWFSGC-IAVPLALSYPESELLHVMHDSDISMVLSTE 123 (435)
Q Consensus 63 ~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~-~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~ 123 (435)
+++++|++|+|+..-.+-.+++.+|- ..|+ .++.++.+ ++++ .++++.+++.++...
T Consensus 189 ~~~~~g~~VlV~GaG~vG~~a~q~a~-~~Ga~~Vi~~~~~--~~~~-~~a~~lGa~~vi~~~ 246 (378)
T 3uko_A 189 AKVEPGSNVAIFGLGTVGLAVAEGAK-TAGASRIIGIDID--SKKY-ETAKKFGVNEFVNPK 246 (378)
T ss_dssp TCCCTTCCEEEECCSHHHHHHHHHHH-HHTCSCEEEECSC--TTHH-HHHHTTTCCEEECGG
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHH-HcCCCeEEEEcCC--HHHH-HHHHHcCCcEEEccc
Confidence 58899999999987445666655554 6687 55555443 2333 356788998877643
No 114
>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1
Probab=23.02 E-value=1.6e+02 Score=26.42 Aligned_cols=57 Identities=18% Similarity=0.163 Sum_probs=38.8
Q ss_pred cCCCCCeEEEEeCCCHHHHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEech
Q 013869 64 AGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTE 123 (435)
Q Consensus 64 g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~ 123 (435)
++++|++|+|...-.+-.+++.+|-...|+.++.+.. ++++ ...+++.+++.++...
T Consensus 183 ~~~~g~~VlV~GaG~vG~~avqlak~~~Ga~Vi~~~~--~~~~-~~~~~~lGa~~vi~~~ 239 (359)
T 1h2b_A 183 TLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDV--KEEK-LKLAERLGADHVVDAR 239 (359)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEES--SHHH-HHHHHHTTCSEEEETT
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeC--CHHH-HHHHHHhCCCEEEecc
Confidence 7789999999988556666666666433876655543 3444 3455688998887644
No 115
>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*
Probab=22.83 E-value=2.3e+02 Score=24.88 Aligned_cols=57 Identities=16% Similarity=0.180 Sum_probs=38.9
Q ss_pred ccCCCCCeEEEEeCCC-HHHHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEec
Q 013869 63 LAGGCGARIGIVAKPS-FEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLST 122 (435)
Q Consensus 63 ~g~~~g~~V~i~~~~~-~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~ 122 (435)
+++++|++|+|....+ +-..++.+| ...|+.++.+.. +++++....++.+++.++..
T Consensus 145 ~~~~~g~~vlI~Ga~g~iG~~~~~~a-~~~Ga~Vi~~~~--~~~~~~~~~~~~g~~~~~~~ 202 (336)
T 4b7c_A 145 GQPKNGETVVISGAAGAVGSVAGQIA-RLKGCRVVGIAG--GAEKCRFLVEELGFDGAIDY 202 (336)
T ss_dssp TCCCTTCEEEESSTTSHHHHHHHHHH-HHTTCEEEEEES--SHHHHHHHHHTTCCSEEEET
T ss_pred cCCCCCCEEEEECCCCHHHHHHHHHH-HHCCCEEEEEeC--CHHHHHHHHHHcCCCEEEEC
Confidence 5889999999998855 555555554 467887665543 35555555478888877653
No 116
>4hlb_A Uncharacterized protein; alpha-lytic protease prodomain-like fold, structural genomic center for structural genomics, JCSG; 1.80A {Desulfovibrio piger}
Probab=22.46 E-value=1.8e+02 Score=19.51 Aligned_cols=40 Identities=18% Similarity=0.120 Sum_probs=32.8
Q ss_pred EEeCCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEe
Q 013869 20 IRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75 (435)
Q Consensus 20 l~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~ 75 (435)
++..++.+|.+|+-.-+.+--..|+++ .|+.+.-+|+-++
T Consensus 57 fvaadrkmtraefsaiasrsirelker----------------fgfdkdvpigavl 96 (115)
T 4hlb_A 57 FVAADRKMTRAEFSAIASRSIRELKER----------------FGFDKDVPIGAVL 96 (115)
T ss_dssp EEESSSCCCHHHHHHHHHHHHHHHHHH----------------HTCCTTSCEEEEE
T ss_pred EEeccchhhHHHHHHHHHHHHHHHHHH----------------hCCCcCCccceeE
Confidence 345789999999999988888889886 6888888887654
No 117
>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}
Probab=22.25 E-value=2.3e+02 Score=21.50 Aligned_cols=50 Identities=12% Similarity=0.059 Sum_probs=33.0
Q ss_pred CeEEEEeCCCHHHHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEE
Q 013869 69 ARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMV 119 (435)
Q Consensus 69 ~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~v 119 (435)
|.|.++.| .....-++..|...|...+.+.+....+++....++.+.+++
T Consensus 72 Dlvii~vp-~~~v~~v~~~~~~~g~~~i~i~~~~~~~~l~~~a~~~Gi~~i 121 (145)
T 2duw_A 72 DMVDVFRN-SEAAWGVAQEAIAIGAKTLWLQLGVINEQAAVLAREAGLSVV 121 (145)
T ss_dssp SEEECCSC-STHHHHHHHHHHHHTCCEEECCTTCCCHHHHHHHHTTTCEEE
T ss_pred CEEEEEeC-HHHHHHHHHHHHHcCCCEEEEcCChHHHHHHHHHHHcCCEEE
Confidence 56666666 444444455677788777777776666777777777776654
No 118
>1o58_A O-acetylserine sulfhydrylase; TM0665, structural genomics, J protein structure initiative, joint center for structural G transferase; 1.80A {Thermotoga maritima} SCOP: c.79.1.1 PDB: 3fca_A*
Probab=22.13 E-value=3.9e+02 Score=23.15 Aligned_cols=51 Identities=12% Similarity=-0.066 Sum_probs=36.7
Q ss_pred EeCCCHHHHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechh
Q 013869 74 VAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTED 124 (435)
Q Consensus 74 ~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 124 (435)
....+-.-..+.++|...|..++.+-|...+......++..++++++++.+
T Consensus 70 ~aSsGN~g~a~A~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 120 (303)
T 1o58_A 70 EPTSGNMGIAIAMIGAKRGHRVILTMPETMSVERRKVLKMLGAELVLTPGE 120 (303)
T ss_dssp EECSSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred EECchHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCEEEEECCC
Confidence 455566666777778899987766544434445566789999999999875
No 119
>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}
Probab=22.00 E-value=2.7e+02 Score=24.72 Aligned_cols=78 Identities=14% Similarity=-0.019 Sum_probs=47.9
Q ss_pred cccCHHHHHHHHHHHHHH---HhhCCCCCccccccccccccccCCCCCeEEEEeCCC-HHHHHHHHHHHHhCCeEEeCCC
Q 013869 25 KSYSYDQLASSALRISSL---LCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPS-FEFVAGVLGTWFSGCIAVPLAL 100 (435)
Q Consensus 25 ~~~Ty~el~~~~~~la~~---L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~-~~~~~~~lA~~~~G~~~v~l~~ 100 (435)
..+++.+........+.. |.+. +++++|++|+|....+ +-..++.+| ...|+.++.+..
T Consensus 138 ~~~~~~~aa~l~~~~~ta~~~l~~~----------------~~~~~g~~VlV~Gg~g~iG~~~~~~a-~~~Ga~Vi~~~~ 200 (353)
T 4dup_A 138 KGYDAVKAAALPETFFTVWANLFQM----------------AGLTEGESVLIHGGTSGIGTTAIQLA-RAFGAEVYATAG 200 (353)
T ss_dssp TTCCHHHHHTSHHHHHHHHHHHTTT----------------TCCCTTCEEEESSTTSHHHHHHHHHH-HHTTCEEEEEES
T ss_pred CCCCHHHHhhhhhHHHHHHHHHHHh----------------cCCCCCCEEEEEcCCCHHHHHHHHHH-HHcCCEEEEEeC
Confidence 457888765444333333 3333 5889999999996656 555555554 477887665543
Q ss_pred CCCHHHHHHHHhcCCccEEEec
Q 013869 101 SYPESELLHVMHDSDISMVLST 122 (435)
Q Consensus 101 ~~~~~~l~~~l~~~~~~~vi~~ 122 (435)
+++++ ..+++.+++.++..
T Consensus 201 --~~~~~-~~~~~lGa~~~~~~ 219 (353)
T 4dup_A 201 --STGKC-EACERLGAKRGINY 219 (353)
T ss_dssp --SHHHH-HHHHHHTCSEEEET
T ss_pred --CHHHH-HHHHhcCCCEEEeC
Confidence 34444 44566778877653
No 120
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=21.73 E-value=1.6e+02 Score=26.13 Aligned_cols=56 Identities=11% Similarity=-0.025 Sum_probs=31.9
Q ss_pred CCCCeEEEEeCCCHHHHHHHHHHHHhCCeEEeCCCC----CCHHHHHHHHhcCCccEEEec
Q 013869 66 GCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALS----YPESELLHVMHDSDISMVLST 122 (435)
Q Consensus 66 ~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~----~~~~~l~~~l~~~~~~~vi~~ 122 (435)
++||.|.+..+....+.....++...|+.++.++.. ...+++...++. ++++|+..
T Consensus 87 ~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~ 146 (384)
T 1eg5_A 87 KRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDSRGVVKLEELEKLVDE-DTFLVSIM 146 (384)
T ss_dssp TTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBCTTSCBCHHHHHHHCCT-TEEEEEEE
T ss_pred CCCCEEEECCCCchHHHHHHHHHHhcCCEEEEEccCCCCccCHHHHHHHhCC-CCeEEEEE
Confidence 578887776665555544444445567766665432 345566655543 45555543
No 121
>2pfu_A Biopolymer transport EXBD protein; TONB system, proton motive force, periplasmic domain; NMR {Escherichia coli}
Probab=21.58 E-value=1.4e+02 Score=20.60 Aligned_cols=37 Identities=14% Similarity=0.146 Sum_probs=28.6
Q ss_pred HHHHHHHhcccCCCeeEEEeCCcccCHHHHHHHHHHH
Q 013869 3 VFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRI 39 (435)
Q Consensus 3 i~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~l 39 (435)
+...|......+|+...++..++..+|+.+.+-...+
T Consensus 44 L~~~l~~~~~~~~~~~V~I~aD~~~~y~~vv~vmd~l 80 (99)
T 2pfu_A 44 MITALNALTEGKKDTTIFFRADKTVDYETLMKVMDTL 80 (99)
T ss_dssp HHHHHHHHSSSCCSSCEEEEECTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHHH
Confidence 4566777778889999999999999999986544433
No 122
>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*
Probab=21.58 E-value=2.3e+02 Score=24.98 Aligned_cols=57 Identities=11% Similarity=0.107 Sum_probs=39.9
Q ss_pred ccCCCCCeEEEEeCCCHHHHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEech
Q 013869 63 LAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTE 123 (435)
Q Consensus 63 ~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~ 123 (435)
.++++|++|+|...-.+-.+++.+|- ..|+.++.+.. +++++ ..+++.+++.++...
T Consensus 162 ~~~~~g~~VlV~GaG~vG~~a~qla~-~~Ga~Vi~~~~--~~~~~-~~~~~lGa~~~i~~~ 218 (340)
T 3s2e_A 162 TDTRPGQWVVISGIGGLGHVAVQYAR-AMGLRVAAVDI--DDAKL-NLARRLGAEVAVNAR 218 (340)
T ss_dssp TTCCTTSEEEEECCSTTHHHHHHHHH-HTTCEEEEEES--CHHHH-HHHHHTTCSEEEETT
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHH-HCCCeEEEEeC--CHHHH-HHHHHcCCCEEEeCC
Confidence 58899999999877556777666665 56887665543 34443 456788898887643
No 123
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=21.28 E-value=1.9e+02 Score=25.73 Aligned_cols=55 Identities=13% Similarity=0.003 Sum_probs=38.1
Q ss_pred CCCCCeEEEEeCCCHHHHHHHHHHHHhCCeEEeCCCC-------CCHHHHHHHHhcCCccEEEec
Q 013869 65 GGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALS-------YPESELLHVMHDSDISMVLST 122 (435)
Q Consensus 65 ~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~-------~~~~~l~~~l~~~~~~~vi~~ 122 (435)
+++||.|.+..+....+. .++...|+.++.++.. ...+.+...+++.++++|+..
T Consensus 106 ~~~gd~vl~~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~i~ 167 (391)
T 3dzz_A 106 TSPGDQILVQEPVYNMFY---SVIEGNGRRVISSDLIYENSKYSVNWADLEEKLATPSVRMMVFC 167 (391)
T ss_dssp SCTTCEEEECSSCCHHHH---HHHHHTTCEEEECCCEEETTEEECCHHHHHHHHTSTTEEEEEEE
T ss_pred CCCCCeEEECCCCcHHHH---HHHHHcCCEEEEeeeeecCCceeecHHHHHHHHhccCceEEEEE
Confidence 468898887776665533 3556778887777652 677888888876677776543
No 124
>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*
Probab=21.27 E-value=1.9e+02 Score=25.66 Aligned_cols=57 Identities=11% Similarity=0.119 Sum_probs=39.2
Q ss_pred cCCCCCeEEEEeCCCHHHHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEech
Q 013869 64 AGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTE 123 (435)
Q Consensus 64 g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~ 123 (435)
.+++|++|+|...-.+-.+++.+|-..-|..++.++. ++++ ..++++.+++.++...
T Consensus 168 ~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~--~~~~-~~~~~~lGa~~~i~~~ 224 (345)
T 3jv7_A 168 LLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDL--DDDR-LALAREVGADAAVKSG 224 (345)
T ss_dssp GCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEES--CHHH-HHHHHHTTCSEEEECS
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC--CHHH-HHHHHHcCCCEEEcCC
Confidence 7899999999987556777777776554666655543 3443 4466788898887654
No 125
>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*
Probab=21.20 E-value=3.3e+02 Score=24.32 Aligned_cols=57 Identities=11% Similarity=0.051 Sum_probs=37.7
Q ss_pred ccCCCCCeEEEEeCCCHHHHHHHHHHHHhCC-eEEeCCCCCCHHHHHHHHhcCCccEEEech
Q 013869 63 LAGGCGARIGIVAKPSFEFVAGVLGTWFSGC-IAVPLALSYPESELLHVMHDSDISMVLSTE 123 (435)
Q Consensus 63 ~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~-~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~ 123 (435)
+++++|++|+|+..-.+-.+++.+|- ..|+ .++.+..+ +++ ...+++.+++.++...
T Consensus 187 ~~~~~g~~VlV~GaG~vG~~aiqlak-~~Ga~~Vi~~~~~--~~~-~~~a~~lGa~~vi~~~ 244 (373)
T 1p0f_A 187 AKVTPGSTCAVFGLGGVGFSAIVGCK-AAGASRIIGVGTH--KDK-FPKAIELGATECLNPK 244 (373)
T ss_dssp TCCCTTCEEEEECCSHHHHHHHHHHH-HHTCSEEEEECSC--GGG-HHHHHHTTCSEEECGG
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHH-HcCCCeEEEECCC--HHH-HHHHHHcCCcEEEecc
Confidence 58899999999986446666666665 5687 45545433 333 3345678888887544
No 126
>3acd_A Hypoxanthine-guanine phosphoribosyltransferase; rossmann fold, structural genomics, NPPSFA; HET: IMP; 1.89A {Thermus thermophilus} PDB: 3acc_A* 3acb_A*
Probab=20.93 E-value=1.6e+02 Score=23.56 Aligned_cols=21 Identities=5% Similarity=0.069 Sum_probs=19.0
Q ss_pred cccCHHHHHHHHHHHHHHHhh
Q 013869 25 KSYSYDQLASSALRISSLLCS 45 (435)
Q Consensus 25 ~~~Ty~el~~~~~~la~~L~~ 45 (435)
.-+|..|+.+++.++|..+.+
T Consensus 12 vlis~~~I~~~i~rlA~eI~e 32 (181)
T 3acd_A 12 VQISAEAIKKRVEELGGEIAR 32 (181)
T ss_dssp CCBCHHHHHHHHHHHHHHHHH
T ss_pred EEeCHHHHHHHHHHHHHHHHH
Confidence 347999999999999999988
No 127
>1j0a_A 1-aminocyclopropane-1-carboxylate deaminase; PLP dependent, lyase; HET: PLP; 2.50A {Pyrococcus horikoshii} SCOP: c.79.1.1 PDB: 1j0b_A*
Probab=20.91 E-value=1.4e+02 Score=26.29 Aligned_cols=57 Identities=12% Similarity=-0.151 Sum_probs=41.6
Q ss_pred CeEEEE-eCCCHHHHHHHHHHHHhCCeEEeCCCCCC-HHHHHHHHhcCCccEEEechhh
Q 013869 69 ARIGIV-AKPSFEFVAGVLGTWFSGCIAVPLALSYP-ESELLHVMHDSDISMVLSTEDY 125 (435)
Q Consensus 69 ~~V~i~-~~~~~~~~~~~lA~~~~G~~~v~l~~~~~-~~~l~~~l~~~~~~~vi~~~~~ 125 (435)
+.|.-. ...+-....+.++|...|..++.+-|... +......++..++++++++...
T Consensus 71 ~~vv~~G~ssGN~g~alA~~a~~~G~~~~iv~p~~~~~~~k~~~~~~~GA~v~~~~~~~ 129 (325)
T 1j0a_A 71 DVVITVGAVHSNHAFVTGLAAKKLGLDAILVLRGKEELKGNYLLDKIMGIETRVYDAKD 129 (325)
T ss_dssp SEEEEECCTTCHHHHHHHHHHHHTTCEEEEEEESCCCSCHHHHHHHHTTCEEEEESCCS
T ss_pred CEEEEcCCcchHHHHHHHHHHHHhCCcEEEEECCCCCCCchHHHHHHCCCEEEEeCcch
Confidence 344443 26678888889999999998876544333 4455678899999999998754
No 128
>2ywu_A Hypoxanthine-guanine phosphoribosyltransferase; rossmann fold, structural genomics, NPPSFA; HET: IMP; 1.89A {Thermus thermophilus} PDB: 2ywt_A* 2yws_A* 3acb_A 3acc_A* 3acd_A*
Probab=20.62 E-value=1.6e+02 Score=23.47 Aligned_cols=21 Identities=5% Similarity=0.069 Sum_probs=19.5
Q ss_pred cccCHHHHHHHHHHHHHHHhh
Q 013869 25 KSYSYDQLASSALRISSLLCS 45 (435)
Q Consensus 25 ~~~Ty~el~~~~~~la~~L~~ 45 (435)
.-+|+.++.++++++|..+.+
T Consensus 12 ~li~~~~i~~~i~~La~~I~~ 32 (181)
T 2ywu_A 12 VQISAEAIKKRVEELGGEIAR 32 (181)
T ss_dssp CCBCHHHHHHHHHHHHHHHHH
T ss_pred EEECHHHHHHHHHHHHHHHHH
Confidence 468999999999999999987
No 129
>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*
Probab=20.58 E-value=2.4e+02 Score=21.25 Aligned_cols=50 Identities=12% Similarity=0.028 Sum_probs=36.1
Q ss_pred CeEEEEeCCCHHHHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEE
Q 013869 69 ARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMV 119 (435)
Q Consensus 69 ~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~v 119 (435)
|.+.|+.| .....-++-.|...|...+.+.+....+++....++.+.+++
T Consensus 79 Dlvvi~vp-~~~~~~vv~~~~~~gi~~i~~~~g~~~~~l~~~a~~~Gi~vv 128 (144)
T 2d59_A 79 EVVDLFVK-PKLTMEYVEQAIKKGAKVVWFQYNTYNREASKKADEAGLIIV 128 (144)
T ss_dssp SEEEECSC-HHHHHHHHHHHHHHTCSEEEECTTCCCHHHHHHHHHTTCEEE
T ss_pred CEEEEEeC-HHHHHHHHHHHHHcCCCEEEECCCchHHHHHHHHHHcCCEEE
Confidence 55555544 455555566788888877777777778888888998888854
No 130
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=20.53 E-value=3e+02 Score=21.28 Aligned_cols=45 Identities=9% Similarity=-0.061 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEech
Q 013869 79 FEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTE 123 (435)
Q Consensus 79 ~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~ 123 (435)
+-..++...+-..|.-++.+....+.+++...+.+.++++|..+.
T Consensus 33 iG~~~va~~l~~~G~eVi~lG~~~p~e~lv~aa~~~~~diV~lS~ 77 (161)
T 2yxb_A 33 RGAKVVARALRDAGFEVVYTGLRQTPEQVAMAAVQEDVDVIGVSI 77 (161)
T ss_dssp HHHHHHHHHHHHTTCEEECCCSBCCHHHHHHHHHHTTCSEEEEEE
T ss_pred HHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHhcCCCEEEEEe
Confidence 334444445556899999999999999999999999999999875
Done!