BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013871
(434 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 36.2 bits (82), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 5/83 (6%)
Query: 242 VRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSE-WSPDGRYFMTATTA 300
V W P L G G + + FW+ G ++ T A VTS WSP + M+
Sbjct: 265 VAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGF 324
Query: 301 PRLQIDNGIKIFHHNGSLFFKKM 323
P DN + I+ ++ S K++
Sbjct: 325 P----DNNLSIWSYSSSGLTKQV 343
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 9/88 (10%)
Query: 225 NKKCRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVT 284
N K R L +G +TV +P G LC +G + G + WD +GK+L + A +
Sbjct: 550 NCKLRSTLAGHTGYVSTVAVSPDGS-LCASGGKD--GVVLLWDLAEGKKLYSLEANSVIH 606
Query: 285 SEWSPDGRYFMTATTAPRLQIDNGIKIF 312
+ RY++ A T ++GIKI+
Sbjct: 607 ALCFSPNRYWLCAAT------EHGIKIW 628
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 31.6 bits (70), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Query: 236 SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFM 295
+G NTV +P G LC +G + G WD +GK L T + + RY++
Sbjct: 215 TGYLNTVTVSPDGS-LCASGGKD--GQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWL 271
Query: 296 TATTAPRLQI 305
A T P ++I
Sbjct: 272 CAATGPSIKI 281
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 31.6 bits (70), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 49/110 (44%), Gaps = 15/110 (13%)
Query: 212 VVYGFMPASATIFN---KKCRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDY 268
+V G S I++ KC L S P + V +N G + + + L WD
Sbjct: 144 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL---CRIWDT 200
Query: 269 VDGKQLGTTRAECS---VTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN 315
G+ L T + + ++SP+G+Y + AT +DN +K++ ++
Sbjct: 201 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT------LDNTLKLWDYS 244
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 49/110 (44%), Gaps = 15/110 (13%)
Query: 212 VVYGFMPASATIFN---KKCRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDY 268
+V G S I++ KC L S P + V +N G + + + L WD
Sbjct: 146 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL---CRIWDT 202
Query: 269 VDGKQLGTTRAECS---VTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN 315
G+ L T + + ++SP+G+Y + AT +DN +K++ ++
Sbjct: 203 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT------LDNTLKLWDYS 246
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Query: 236 SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFM 295
+G NTV +P G LC +G + G WD +GK L T + + RY++
Sbjct: 192 TGYLNTVTVSPDGS-LCASGGKD--GQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWL 248
Query: 296 TATTAPRLQI 305
A T P ++I
Sbjct: 249 CAATGPSIKI 258
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 49/110 (44%), Gaps = 15/110 (13%)
Query: 212 VVYGFMPASATIFN---KKCRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDY 268
+V G S I++ KC L S P + V +N G + + + L WD
Sbjct: 128 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL---CRIWDT 184
Query: 269 VDGKQLGTTRAECS---VTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN 315
G+ L T + + ++SP+G+Y + AT +DN +K++ ++
Sbjct: 185 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT------LDNTLKLWDYS 228
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 49/110 (44%), Gaps = 15/110 (13%)
Query: 212 VVYGFMPASATIFN---KKCRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDY 268
+V G S I++ KC L S P + V +N G + + + L WD
Sbjct: 122 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL---CRIWDT 178
Query: 269 VDGKQLGTTRAECS---VTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN 315
G+ L T + + ++SP+G+Y + AT +DN +K++ ++
Sbjct: 179 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT------LDNTLKLWDYS 222
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 49/110 (44%), Gaps = 15/110 (13%)
Query: 212 VVYGFMPASATIFN---KKCRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDY 268
+V G S I++ KC L S P + V +N G + + + L WD
Sbjct: 128 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL---CRIWDT 184
Query: 269 VDGKQLGTTRAECS---VTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN 315
G+ L T + + ++SP+G+Y + AT +DN +K++ ++
Sbjct: 185 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT------LDNTLKLWDYS 228
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 49/110 (44%), Gaps = 15/110 (13%)
Query: 212 VVYGFMPASATIFN---KKCRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDY 268
+V G S I++ KC L S P + V +N G + + + L WD
Sbjct: 123 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL---CRIWDT 179
Query: 269 VDGKQLGTTRAECS---VTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN 315
G+ L T + + ++SP+G+Y + AT +DN +K++ ++
Sbjct: 180 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT------LDNTLKLWDYS 223
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 49/110 (44%), Gaps = 15/110 (13%)
Query: 212 VVYGFMPASATIFN---KKCRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDY 268
+V G S I++ KC L S P + V +N G + + + L WD
Sbjct: 128 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL---CRIWDT 184
Query: 269 VDGKQLGTTRAECS---VTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN 315
G+ L T + + ++SP+G+Y + AT +DN +K++ ++
Sbjct: 185 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT------LDNTLKLWDYS 228
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 49/110 (44%), Gaps = 15/110 (13%)
Query: 212 VVYGFMPASATIFN---KKCRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDY 268
+V G S I++ KC L S P + V +N G + + + L WD
Sbjct: 122 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL---CRIWDT 178
Query: 269 VDGKQLGTTRAECS---VTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN 315
G+ L T + + ++SP+G+Y + AT +DN +K++ ++
Sbjct: 179 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT------LDNTLKLWDYS 222
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 15/109 (13%)
Query: 212 VVYGFMPASATIFN---KKCRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDY 268
+V G S I++ KC L S P + V +N G + + + L WD
Sbjct: 139 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL---CRIWDT 195
Query: 269 VDGKQLGTTRAECS---VTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH 314
G+ L T + + ++SP+G+Y + AT +DN +K++ +
Sbjct: 196 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT------LDNTLKLWDY 238
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 49/110 (44%), Gaps = 15/110 (13%)
Query: 212 VVYGFMPASATIFN---KKCRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDY 268
+V G S I++ KC L S P + V +N G + + + L WD
Sbjct: 127 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL---CRIWDT 183
Query: 269 VDGKQLGTTRAECS---VTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN 315
G+ L T + + ++SP+G+Y + AT +DN +K++ ++
Sbjct: 184 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT------LDNTLKLWDYS 227
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 15/109 (13%)
Query: 212 VVYGFMPASATIFN---KKCRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDY 268
+V G S I++ KC L S P + V +N G + + + L WD
Sbjct: 118 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL---CRIWDT 174
Query: 269 VDGKQLGTTRAECS---VTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH 314
G+ L T + + ++SP+G+Y + AT +DN +K++ +
Sbjct: 175 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT------LDNTLKLWDY 217
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 49/110 (44%), Gaps = 15/110 (13%)
Query: 212 VVYGFMPASATIFNKK---CRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDY 268
+V G S I++ K C L S P + V +N G + + + L WD
Sbjct: 125 IVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL---CRIWDT 181
Query: 269 VDGKQLGTTRAECS---VTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN 315
G+ L T + + ++SP+G+Y + AT +DN +K++ ++
Sbjct: 182 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT------LDNTLKLWDYS 225
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 49/110 (44%), Gaps = 15/110 (13%)
Query: 212 VVYGFMPASATIFN---KKCRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDY 268
+V G S I++ KC L S P + V +N G + + + L WD
Sbjct: 125 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL---CRIWDT 181
Query: 269 VDGKQLGTTRAECS---VTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN 315
G+ L T + + ++SP+G+Y + AT +DN +K++ ++
Sbjct: 182 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT------LDNTLKLWDYS 225
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 49/110 (44%), Gaps = 15/110 (13%)
Query: 212 VVYGFMPASATIFN---KKCRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDY 268
+V G S I++ KC L S P + V +N G + + + L WD
Sbjct: 121 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL---CRIWDT 177
Query: 269 VDGKQLGTTRAECS---VTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN 315
G+ L T + + ++SP+G+Y + AT +DN +K++ ++
Sbjct: 178 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT------LDNTLKLWDYS 221
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 49/110 (44%), Gaps = 15/110 (13%)
Query: 212 VVYGFMPASATIFN---KKCRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDY 268
+V G S I++ KC L S P + V +N G + + + L WD
Sbjct: 125 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL---CRIWDT 181
Query: 269 VDGKQLGTTRAECS---VTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN 315
G+ L T + + ++SP+G+Y + AT +DN +K++ ++
Sbjct: 182 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT------LDNTLKLWDYS 225
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 49/110 (44%), Gaps = 15/110 (13%)
Query: 212 VVYGFMPASATIFN---KKCRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDY 268
+V G S I++ KC L S P + V +N G + + + L WD
Sbjct: 125 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL---CRIWDT 181
Query: 269 VDGKQLGTTRAECS---VTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN 315
G+ L T + + ++SP+G+Y + AT +DN +K++ ++
Sbjct: 182 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT------LDNTLKLWDYS 225
>pdb|1RH8|A Chain A, Three-Dimensional Structure Of The Calcium-Free Piccolo
C2a- Domain
Length = 142
Score = 30.0 bits (66), Expect = 2.9, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 18 QKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDE 61
QKS P+ +++K+ + E QL +K + T W RFSS++
Sbjct: 72 QKSLNPEWNQTVIYKSISME---QLMKKTLEVTVWDYDRFSSND 112
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 11/74 (14%)
Query: 240 NTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTS-EWSPDGRYFMTAT 298
NT+ +P G + AG G++ W+ K + T A+ V S +SP+ RY++ A
Sbjct: 200 NTLTASPDGTLIASAG---KDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPN-RYWLAAA 255
Query: 299 TAPRLQIDNGIKIF 312
TA GIK+F
Sbjct: 256 TA------TGIKVF 263
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 11/74 (14%)
Query: 240 NTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTS-EWSPDGRYFMTAT 298
NT+ +P G + AG G++ W+ K + T A+ V S +SP+ RY++ A
Sbjct: 200 NTLTASPDGTLIASAG---KDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPN-RYWLAAA 255
Query: 299 TAPRLQIDNGIKIF 312
TA GIK+F
Sbjct: 256 TA------TGIKVF 263
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 11/74 (14%)
Query: 240 NTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTS-EWSPDGRYFMTAT 298
NT+ +P G + AG G++ W+ K + T A+ V S +SP+ RY++ A
Sbjct: 200 NTLTASPDGTLIASAG---KDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPN-RYWLAAA 255
Query: 299 TAPRLQIDNGIKIF 312
TA GIK+F
Sbjct: 256 TA------TGIKVF 263
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 11/74 (14%)
Query: 240 NTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTS-EWSPDGRYFMTAT 298
NT+ +P G + AG G++ W+ K + T A+ V S +SP+ RY++ A
Sbjct: 200 NTLTASPDGTLIASAG---KDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPN-RYWLAAA 255
Query: 299 TAPRLQIDNGIKIF 312
TA GIK+F
Sbjct: 256 TA------TGIKVF 263
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 11/74 (14%)
Query: 240 NTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTS-EWSPDGRYFMTAT 298
NT+ +P G + AG G++ W+ K + T A+ V S +SP+ RY++ A
Sbjct: 194 NTLTASPDGTLIASAG---KDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPN-RYWLAAA 249
Query: 299 TAPRLQIDNGIKIF 312
TA GIK+F
Sbjct: 250 TA------TGIKVF 257
>pdb|3QLB|A Chain A, Enantiopyochelin Outer Membrane Tonb-Dependent Transporter
From Pseudomonas Fluorescens Bound To The
Ferri-Enantiopyochelin
pdb|3QLB|B Chain B, Enantiopyochelin Outer Membrane Tonb-Dependent Transporter
From Pseudomonas Fluorescens Bound To The
Ferri-Enantiopyochelin
Length = 748
Score = 28.1 bits (61), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 21/97 (21%), Positives = 39/97 (40%), Gaps = 1/97 (1%)
Query: 76 DTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLA 135
D T + G L R+ V + S G HV + + G + + + +
Sbjct: 326 DRTQYSLGYLLEHRLNDVWSLNSSARYG-HVNLLTNTASGMSLAPDLRTLNRAAYRFRIV 384
Query: 136 RRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYY 172
++ + Q WN GST ++++ D +T + YY
Sbjct: 385 GDTYSLDNNAQARWNLGSTQMVSLLGIDYRRTREDYY 421
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,090,107
Number of Sequences: 62578
Number of extensions: 562620
Number of successful extensions: 1204
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 1197
Number of HSP's gapped (non-prelim): 38
length of query: 434
length of database: 14,973,337
effective HSP length: 102
effective length of query: 332
effective length of database: 8,590,381
effective search space: 2852006492
effective search space used: 2852006492
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)