Query 013871
Match_columns 434
No_of_seqs 382 out of 2224
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 08:13:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013871.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013871hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2315 Predicted translation 100.0 2.6E-78 5.6E-83 567.2 34.1 350 2-357 76-432 (566)
2 COG5354 Uncharacterized protei 100.0 1.3E-56 2.9E-61 416.1 31.4 360 2-391 74-446 (561)
3 KOG2314 Translation initiation 100.0 2E-45 4.2E-50 344.3 27.5 340 2-350 252-610 (698)
4 PF08662 eIF2A: Eukaryotic tra 100.0 1.2E-40 2.6E-45 292.7 24.2 194 137-330 1-194 (194)
5 KOG0271 Notchless-like WD40 re 100.0 2.9E-39 6.4E-44 290.7 21.9 310 2-343 118-470 (480)
6 KOG0272 U4/U6 small nuclear ri 100.0 5.9E-33 1.3E-37 253.1 23.0 271 2-313 178-458 (459)
7 KOG0271 Notchless-like WD40 re 100.0 1E-29 2.2E-34 229.3 21.8 279 2-313 160-479 (480)
8 KOG0286 G-protein beta subunit 100.0 3.7E-28 8.1E-33 212.4 29.3 270 2-313 58-343 (343)
9 KOG0272 U4/U6 small nuclear ri 100.0 6.7E-29 1.4E-33 226.7 19.7 262 50-342 176-448 (459)
10 KOG0315 G-protein beta subunit 100.0 8.9E-27 1.9E-31 199.5 29.8 269 11-320 10-294 (311)
11 KOG0273 Beta-transducin family 100.0 7E-27 1.5E-31 216.1 27.9 272 2-314 238-522 (524)
12 KOG0318 WD40 repeat stress pro 100.0 1E-25 2.2E-30 211.0 32.4 314 1-342 192-590 (603)
13 KOG0291 WD40-repeat-containing 100.0 8.6E-25 1.9E-29 212.5 35.5 308 2-342 58-538 (893)
14 cd00200 WD40 WD40 domain, foun 100.0 1.1E-24 2.3E-29 202.1 34.5 272 2-313 12-289 (289)
15 KOG0279 G protein beta subunit 99.9 1E-24 2.3E-29 189.8 30.3 274 2-315 18-313 (315)
16 KOG0273 Beta-transducin family 99.9 2.9E-25 6.4E-30 205.4 27.6 300 2-340 181-509 (524)
17 KOG0293 WD40 repeat-containing 99.9 4.6E-26 1E-30 207.5 21.4 272 2-315 227-513 (519)
18 KOG0279 G protein beta subunit 99.9 1.1E-23 2.5E-28 183.3 26.3 261 49-342 15-301 (315)
19 KOG0263 Transcription initiati 99.9 1.3E-24 2.8E-29 212.9 22.9 244 38-316 370-650 (707)
20 KOG0291 WD40-repeat-containing 99.9 4.2E-23 9E-28 200.9 32.4 286 2-318 268-615 (893)
21 PLN00181 protein SPA1-RELATED; 99.9 8.1E-23 1.7E-27 217.8 36.4 272 1-314 485-792 (793)
22 KOG0296 Angio-associated migra 99.9 2E-23 4.3E-28 187.9 26.5 282 2-315 67-398 (399)
23 KOG0266 WD40 repeat-containing 99.9 1.4E-23 3.1E-28 208.9 28.0 277 2-316 162-455 (456)
24 KOG0306 WD40-repeat-containing 99.9 1.8E-23 3.8E-28 203.3 26.8 278 2-319 376-668 (888)
25 KOG0318 WD40 repeat stress pro 99.9 1.9E-22 4.1E-27 189.2 31.0 278 2-315 238-602 (603)
26 KOG0284 Polyadenylation factor 99.9 1.4E-24 3E-29 197.8 15.6 272 2-314 99-379 (464)
27 KOG0645 WD40 repeat protein [G 99.9 2.5E-22 5.3E-27 174.3 28.7 279 2-315 17-311 (312)
28 KOG0286 G-protein beta subunit 99.9 4E-22 8.7E-27 174.7 30.0 265 48-342 54-333 (343)
29 KOG0265 U5 snRNP-specific prot 99.9 3E-23 6.4E-28 182.4 22.9 259 1-342 49-326 (338)
30 KOG0305 Anaphase promoting com 99.9 1.6E-22 3.6E-27 194.8 27.4 274 4-317 182-463 (484)
31 KOG1407 WD40 repeat protein [F 99.9 5.7E-22 1.2E-26 171.2 27.6 278 2-314 23-310 (313)
32 KOG0643 Translation initiation 99.9 5.5E-23 1.2E-27 178.0 21.4 285 2-317 13-319 (327)
33 KOG0282 mRNA splicing factor [ 99.9 2.4E-23 5.1E-28 193.5 16.8 273 1-313 216-503 (503)
34 KOG0295 WD40 repeat-containing 99.9 3.3E-22 7.1E-27 180.0 22.1 273 2-314 111-405 (406)
35 KOG1446 Histone H3 (Lys4) meth 99.9 1.5E-20 3.3E-25 166.9 30.8 272 2-315 17-303 (311)
36 KOG0772 Uncharacterized conser 99.9 1.9E-22 4.2E-27 188.6 19.5 276 1-342 169-475 (641)
37 KOG0275 Conserved WD40 repeat- 99.9 1.3E-22 2.9E-27 179.8 16.3 275 2-313 216-507 (508)
38 KOG0315 G-protein beta subunit 99.9 3.4E-21 7.4E-26 165.4 24.2 253 60-344 9-278 (311)
39 KOG0263 Transcription initiati 99.9 4.4E-22 9.6E-27 195.2 21.0 236 2-271 381-651 (707)
40 KOG0316 Conserved WD40 repeat- 99.9 3.8E-21 8.1E-26 163.9 23.3 268 2-313 20-297 (307)
41 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.6E-19 3.4E-24 170.4 36.7 282 12-333 2-299 (300)
42 cd00200 WD40 WD40 domain, foun 99.9 3.6E-20 7.7E-25 171.6 31.8 261 49-342 9-279 (289)
43 KOG0283 WD40 repeat-containing 99.9 8.3E-22 1.8E-26 194.8 21.6 233 2-317 270-578 (712)
44 KOG1407 WD40 repeat protein [F 99.9 4.7E-21 1E-25 165.6 23.3 260 50-342 21-290 (313)
45 KOG0285 Pleiotropic regulator 99.9 5.3E-21 1.2E-25 171.8 24.3 274 2-317 154-441 (460)
46 KOG0973 Histone transcription 99.9 4.6E-21 9.9E-26 194.1 23.2 288 2-317 16-357 (942)
47 KOG0293 WD40 repeat-containing 99.9 7.1E-21 1.5E-25 173.9 20.5 272 50-358 226-512 (519)
48 KOG0284 Polyadenylation factor 99.9 1.3E-21 2.9E-26 178.4 14.9 262 49-342 96-368 (464)
49 KOG0319 WD40-repeat-containing 99.9 5.7E-20 1.2E-24 178.9 25.2 290 24-343 301-608 (775)
50 KOG0310 Conserved WD40 repeat- 99.9 5.1E-20 1.1E-24 171.7 23.5 271 2-313 29-307 (487)
51 KOG2096 WD40 repeat protein [G 99.9 6.3E-20 1.4E-24 162.7 22.8 278 2-316 89-404 (420)
52 KOG0316 Conserved WD40 repeat- 99.9 4.9E-20 1.1E-24 157.1 20.6 263 48-343 16-289 (307)
53 KOG0266 WD40 repeat-containing 99.9 1.4E-19 3.1E-24 180.3 27.1 262 50-342 160-440 (456)
54 PLN00181 protein SPA1-RELATED; 99.9 3.6E-19 7.8E-24 189.9 31.9 285 25-342 457-781 (793)
55 KOG0268 Sof1-like rRNA process 99.9 8.2E-21 1.8E-25 170.9 15.6 253 22-315 85-345 (433)
56 KOG0288 WD40 repeat protein Ti 99.9 1.3E-20 2.8E-25 172.2 15.7 267 2-313 178-459 (459)
57 KOG0973 Histone transcription 99.9 8.4E-20 1.8E-24 185.1 23.1 240 2-270 72-356 (942)
58 PTZ00421 coronin; Provisional 99.9 1.9E-18 4.1E-23 172.1 32.5 238 3-317 24-292 (493)
59 KOG0276 Vesicle coat complex C 99.9 7.2E-19 1.6E-23 168.3 27.8 266 2-298 16-288 (794)
60 KOG0292 Vesicle coat complex C 99.9 5E-19 1.1E-23 175.3 27.5 281 2-315 12-321 (1202)
61 KOG0645 WD40 repeat protein [G 99.8 1.2E-18 2.6E-23 151.6 25.4 217 86-333 10-242 (312)
62 KOG1446 Histone H3 (Lys4) meth 99.8 3.6E-18 7.9E-23 151.8 28.8 260 50-343 15-294 (311)
63 KOG1274 WD40 repeat protein [G 99.8 5.8E-19 1.3E-23 175.8 26.3 255 50-339 14-285 (933)
64 KOG0305 Anaphase promoting com 99.8 2.8E-19 6.1E-24 172.5 22.3 239 2-271 220-463 (484)
65 KOG0650 WD40 repeat nucleolar 99.8 1.4E-19 3.1E-24 172.4 19.5 299 1-345 402-726 (733)
66 PTZ00420 coronin; Provisional 99.8 2.3E-17 4.9E-22 165.4 34.0 265 7-337 34-319 (568)
67 KOG0295 WD40 repeat-containing 99.8 9.6E-19 2.1E-23 157.8 21.5 262 50-342 109-394 (406)
68 KOG0278 Serine/threonine kinas 99.8 1.9E-19 4.2E-24 154.7 15.9 273 2-316 17-298 (334)
69 KOG0647 mRNA export protein (c 99.8 3.8E-18 8.1E-23 150.6 24.2 263 2-299 30-313 (347)
70 KOG0296 Angio-associated migra 99.8 8.2E-18 1.8E-22 151.9 25.8 271 39-342 57-386 (399)
71 KOG0306 WD40-repeat-containing 99.8 7.9E-18 1.7E-22 164.3 27.3 306 3-343 324-653 (888)
72 KOG0281 Beta-TrCP (transducin 99.8 9.4E-20 2E-24 163.2 12.4 249 24-316 215-478 (499)
73 KOG0313 Microtubule binding pr 99.8 1.5E-17 3.3E-22 150.8 26.5 269 3-314 109-417 (423)
74 KOG0265 U5 snRNP-specific prot 99.8 4.3E-18 9.4E-23 150.1 22.1 227 2-311 93-334 (338)
75 KOG0282 mRNA splicing factor [ 99.8 5.1E-19 1.1E-23 164.9 16.9 236 2-267 261-503 (503)
76 KOG0277 Peroxisomal targeting 99.8 3E-18 6.4E-23 147.8 20.3 282 3-314 12-308 (311)
77 KOG0294 WD40 repeat-containing 99.8 5.1E-18 1.1E-22 150.5 21.3 229 2-317 46-283 (362)
78 PRK03629 tolB translocation pr 99.8 7.3E-17 1.6E-21 159.9 31.6 240 71-335 180-428 (429)
79 KOG0641 WD40 repeat protein [G 99.8 4.5E-16 9.6E-21 132.2 30.7 289 1-316 34-350 (350)
80 KOG0288 WD40 repeat protein Ti 99.8 2.4E-18 5.1E-23 157.6 17.3 260 49-343 175-450 (459)
81 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 3.4E-16 7.3E-21 147.6 32.3 255 2-289 33-300 (300)
82 KOG0319 WD40-repeat-containing 99.8 2.3E-17 5E-22 161.0 24.5 276 2-314 326-618 (775)
83 KOG1273 WD40 repeat protein [G 99.8 3.4E-17 7.4E-22 145.3 22.8 272 3-315 27-322 (405)
84 KOG2055 WD40 repeat protein [G 99.8 4.3E-17 9.4E-22 151.3 24.5 274 2-315 216-512 (514)
85 KOG4497 Uncharacterized conser 99.8 1.2E-18 2.5E-23 155.4 12.7 294 4-341 13-378 (447)
86 KOG1036 Mitotic spindle checkp 99.8 9.7E-17 2.1E-21 142.2 24.6 262 2-300 16-295 (323)
87 KOG0772 Uncharacterized conser 99.8 2.4E-17 5.3E-22 154.8 21.6 239 2-312 217-484 (641)
88 KOG0640 mRNA cleavage stimulat 99.8 1.4E-17 3E-22 147.4 18.6 272 2-313 115-424 (430)
89 KOG0276 Vesicle coat complex C 99.8 2.4E-17 5.3E-22 157.9 20.4 259 50-340 14-285 (794)
90 KOG0643 Translation initiation 99.8 4.9E-17 1.1E-21 141.3 20.3 234 2-269 55-317 (327)
91 KOG0277 Peroxisomal targeting 99.8 3.3E-17 7.1E-22 141.4 19.0 260 54-342 13-296 (311)
92 PTZ00421 coronin; Provisional 99.8 1.5E-16 3.3E-21 158.5 26.3 220 2-246 78-313 (493)
93 KOG1274 WD40 repeat protein [G 99.8 2.5E-16 5.4E-21 157.3 26.6 256 3-298 17-289 (933)
94 KOG0283 WD40 repeat-containing 99.8 3.2E-17 6.9E-22 162.6 19.5 235 50-314 269-531 (712)
95 KOG1539 WD repeat protein [Gen 99.8 1.4E-15 3.1E-20 150.4 30.0 312 2-342 205-635 (910)
96 KOG0299 U3 snoRNP-associated p 99.8 2.9E-16 6.2E-21 145.9 23.5 265 2-299 145-445 (479)
97 KOG0285 Pleiotropic regulator 99.8 1.6E-16 3.5E-21 143.2 21.1 261 48-342 150-427 (460)
98 KOG1408 WD40 repeat protein [F 99.8 4.3E-16 9.2E-21 151.5 25.4 304 4-343 329-702 (1080)
99 KOG0278 Serine/threonine kinas 99.8 8.9E-18 1.9E-22 144.6 12.1 216 24-272 79-300 (334)
100 KOG0641 WD40 repeat protein [G 99.7 1.3E-14 2.9E-19 123.3 29.5 264 50-342 33-337 (350)
101 KOG0310 Conserved WD40 repeat- 99.7 5.3E-16 1.1E-20 145.1 22.8 261 50-342 27-297 (487)
102 KOG0274 Cdc4 and related F-box 99.7 9.6E-16 2.1E-20 153.2 26.3 267 2-320 211-488 (537)
103 PRK04922 tolB translocation pr 99.7 1.8E-15 4E-20 150.4 28.1 242 71-334 185-432 (433)
104 KOG0268 Sof1-like rRNA process 99.7 2.2E-17 4.7E-22 149.0 12.7 269 48-359 65-345 (433)
105 KOG1408 WD40 repeat protein [F 99.7 3E-16 6.5E-21 152.5 21.3 242 49-317 459-715 (1080)
106 KOG0289 mRNA splicing factor [ 99.7 1.4E-15 2.9E-20 140.4 23.8 273 2-314 222-505 (506)
107 KOG0639 Transducin-like enhanc 99.7 2E-16 4.4E-21 148.2 18.4 274 1-314 421-703 (705)
108 KOG1538 Uncharacterized conser 99.7 3.3E-16 7.2E-21 151.1 20.2 268 2-316 15-294 (1081)
109 KOG2096 WD40 repeat protein [G 99.7 4.5E-16 9.7E-21 138.4 19.4 228 27-315 62-308 (420)
110 PRK01742 tolB translocation pr 99.7 2.2E-15 4.7E-20 149.6 26.6 236 70-335 184-426 (429)
111 PTZ00420 coronin; Provisional 99.7 4.9E-15 1.1E-19 148.7 29.1 195 108-321 44-256 (568)
112 KOG2106 Uncharacterized conser 99.7 3.9E-14 8.5E-19 133.1 32.2 296 2-342 203-509 (626)
113 PRK05137 tolB translocation pr 99.7 5.9E-15 1.3E-19 147.0 28.8 247 71-335 183-433 (435)
114 KOG0289 mRNA splicing factor [ 99.7 2.2E-15 4.8E-20 139.0 22.8 225 50-299 220-452 (506)
115 KOG2315 Predicted translation 99.7 4.3E-15 9.3E-20 141.5 25.2 303 26-342 11-372 (566)
116 PRK03629 tolB translocation pr 99.7 8.8E-15 1.9E-19 145.0 28.8 242 25-289 178-427 (429)
117 KOG0640 mRNA cleavage stimulat 99.7 1.2E-16 2.6E-21 141.6 13.7 220 48-321 111-342 (430)
118 PRK05137 tolB translocation pr 99.7 1.2E-14 2.5E-19 144.8 29.1 244 25-290 181-433 (435)
119 KOG1063 RNA polymerase II elon 99.7 2E-15 4.3E-20 146.6 22.0 312 2-342 194-636 (764)
120 KOG0275 Conserved WD40 repeat- 99.7 1E-15 2.2E-20 136.3 18.0 259 50-342 214-497 (508)
121 KOG0264 Nucleosome remodeling 99.7 5.3E-15 1.1E-19 137.5 23.2 247 49-320 124-409 (422)
122 PRK11028 6-phosphogluconolacto 99.7 1.4E-13 3.1E-18 132.1 33.8 263 24-315 10-304 (330)
123 PRK01742 tolB translocation pr 99.7 5.7E-15 1.2E-19 146.6 24.7 249 11-290 168-426 (429)
124 KOG1332 Vesicle coat complex C 99.7 2E-15 4.4E-20 129.8 18.1 233 4-315 16-286 (299)
125 KOG4378 Nuclear protein COP1 [ 99.7 7.4E-15 1.6E-19 137.6 23.1 281 25-336 11-305 (673)
126 KOG0302 Ribosome Assembly prot 99.7 1.5E-15 3.3E-20 137.9 17.6 226 92-342 153-426 (440)
127 KOG0281 Beta-TrCP (transducin 99.7 1.4E-16 3E-21 143.0 10.9 237 39-317 187-430 (499)
128 PRK04922 tolB translocation pr 99.7 2.6E-14 5.7E-19 142.1 28.1 242 25-289 183-432 (433)
129 PRK01029 tolB translocation pr 99.7 9.2E-14 2E-18 137.4 31.6 264 11-291 146-426 (428)
130 KOG0313 Microtubule binding pr 99.7 1.1E-14 2.3E-19 132.6 22.5 262 61-342 115-406 (423)
131 KOG2106 Uncharacterized conser 99.7 9.3E-14 2E-18 130.6 29.4 264 2-314 249-520 (626)
132 KOG4328 WD40 protein [Function 99.7 1.2E-14 2.6E-19 135.1 22.5 281 2-316 189-496 (498)
133 KOG0307 Vesicle coat complex C 99.7 5.6E-16 1.2E-20 158.3 14.7 283 4-318 11-330 (1049)
134 PRK02889 tolB translocation pr 99.7 4.1E-14 8.8E-19 140.4 27.7 241 71-335 177-425 (427)
135 KOG1539 WD repeat protein [Gen 99.7 6.2E-14 1.3E-18 139.0 28.2 109 195-313 534-646 (910)
136 KOG0269 WD40 repeat-containing 99.7 3.2E-15 7E-20 146.8 19.0 263 54-340 44-325 (839)
137 KOG2314 Translation initiation 99.7 3.6E-14 7.8E-19 134.8 25.3 308 3-342 214-555 (698)
138 KOG0302 Ribosome Assembly prot 99.7 1.1E-14 2.3E-19 132.4 20.8 229 5-313 157-436 (440)
139 KOG0264 Nucleosome remodeling 99.7 2.6E-15 5.6E-20 139.5 17.0 239 92-358 126-403 (422)
140 KOG0292 Vesicle coat complex C 99.7 1.6E-14 3.5E-19 143.7 23.3 256 50-337 10-305 (1202)
141 KOG0639 Transducin-like enhanc 99.7 2.1E-15 4.5E-20 141.5 16.2 232 2-267 468-702 (705)
142 KOG1273 WD40 repeat protein [G 99.7 1E-14 2.2E-19 129.7 19.6 260 52-342 26-311 (405)
143 KOG1009 Chromatin assembly com 99.7 2.8E-14 6.1E-19 130.9 22.7 292 2-320 16-377 (434)
144 KOG2055 WD40 repeat protein [G 99.7 1.2E-14 2.7E-19 135.2 20.6 264 50-341 214-499 (514)
145 PRK02889 tolB translocation pr 99.7 3.1E-14 6.7E-19 141.2 25.0 252 12-290 164-425 (427)
146 KOG2919 Guanine nucleotide-bin 99.6 4E-14 8.7E-19 126.4 21.1 266 3-299 53-360 (406)
147 PRK04792 tolB translocation pr 99.6 3.3E-13 7.3E-18 134.4 28.7 242 71-335 199-447 (448)
148 KOG4497 Uncharacterized conser 99.6 2.9E-14 6.4E-19 127.5 18.6 294 2-340 51-418 (447)
149 PRK01029 tolB translocation pr 99.6 7.2E-13 1.6E-17 131.0 29.2 247 71-336 166-426 (428)
150 KOG0308 Conserved WD40 repeat- 99.6 2.3E-14 4.9E-19 138.5 17.5 243 4-316 29-286 (735)
151 KOG0646 WD40 repeat protein [G 99.6 3.2E-13 6.9E-18 126.1 24.5 289 24-341 16-336 (476)
152 KOG4283 Transcription-coupled 99.6 2.9E-13 6.2E-18 119.6 22.5 284 2-314 46-364 (397)
153 PRK04043 tolB translocation pr 99.6 3.9E-12 8.5E-17 125.0 33.0 230 71-322 170-407 (419)
154 COG5354 Uncharacterized protei 99.6 4.1E-13 8.8E-18 126.7 24.4 307 4-342 136-462 (561)
155 KOG2445 Nuclear pore complex c 99.6 6.1E-13 1.3E-17 118.2 23.9 255 1-280 15-332 (361)
156 KOG2919 Guanine nucleotide-bin 99.6 1.9E-13 4E-18 122.2 20.4 261 54-342 54-358 (406)
157 KOG0646 WD40 repeat protein [G 99.6 4.7E-14 1E-18 131.5 17.3 220 1-296 83-336 (476)
158 KOG0300 WD40 repeat-containing 99.6 1E-13 2.2E-18 123.4 18.7 274 24-342 168-464 (481)
159 KOG2048 WD40 repeat protein [G 99.6 7.6E-13 1.6E-17 128.7 26.0 310 2-336 157-529 (691)
160 KOG0267 Microtubule severing p 99.6 6E-15 1.3E-19 143.9 11.5 249 10-299 3-258 (825)
161 PRK00178 tolB translocation pr 99.6 1.2E-12 2.6E-17 130.4 28.1 244 71-335 180-428 (430)
162 KOG1063 RNA polymerase II elon 99.6 3.9E-13 8.4E-18 130.9 23.4 287 2-315 364-763 (764)
163 KOG2048 WD40 repeat protein [G 99.6 1.6E-12 3.4E-17 126.5 27.1 267 2-299 28-309 (691)
164 KOG0301 Phospholipase A2-activ 99.6 8E-13 1.7E-17 128.8 24.5 262 3-315 18-288 (745)
165 KOG0274 Cdc4 and related F-box 99.6 3.4E-13 7.4E-18 135.0 22.8 246 50-333 209-463 (537)
166 PRK04792 tolB translocation pr 99.6 2.3E-12 4.9E-17 128.4 27.9 238 26-289 198-446 (448)
167 KOG0269 WD40 repeat-containing 99.6 2.6E-13 5.6E-18 133.7 20.4 269 3-299 43-330 (839)
168 KOG4328 WD40 protein [Function 99.6 6.2E-13 1.3E-17 123.9 20.9 267 50-343 187-483 (498)
169 PRK00178 tolB translocation pr 99.6 4.5E-12 9.7E-17 126.3 28.3 239 26-289 179-427 (430)
170 PF02239 Cytochrom_D1: Cytochr 99.5 7.8E-12 1.7E-16 120.8 28.3 283 4-322 41-355 (369)
171 KOG2110 Uncharacterized conser 99.5 6.1E-12 1.3E-16 114.5 25.6 230 54-318 10-251 (391)
172 TIGR02800 propeller_TolB tol-p 99.5 6.7E-12 1.5E-16 124.6 28.8 230 71-321 171-403 (417)
173 KOG0299 U3 snoRNP-associated p 99.5 8E-13 1.7E-17 123.2 19.9 220 2-254 205-443 (479)
174 KOG1332 Vesicle coat complex C 99.5 2.7E-13 5.8E-18 116.8 14.8 208 115-342 30-274 (299)
175 KOG1963 WD40 repeat protein [G 99.5 2.6E-12 5.6E-17 128.6 23.6 274 5-314 22-321 (792)
176 KOG4378 Nuclear protein COP1 [ 99.5 1.6E-12 3.4E-17 122.2 19.3 253 3-290 38-304 (673)
177 KOG0771 Prolactin regulatory e 99.5 6.1E-13 1.3E-17 122.9 15.9 200 3-268 148-353 (398)
178 TIGR02800 propeller_TolB tol-p 99.5 2.9E-11 6.2E-16 120.1 28.8 255 11-288 155-417 (417)
179 PRK11028 6-phosphogluconolacto 99.5 5.5E-11 1.2E-15 114.2 29.9 254 64-342 6-291 (330)
180 PF08662 eIF2A: Eukaryotic tra 99.5 8.4E-13 1.8E-17 116.1 15.3 139 199-342 9-161 (194)
181 KOG2139 WD40 repeat protein [G 99.5 1.1E-11 2.3E-16 112.6 22.5 236 2-268 143-430 (445)
182 KOG1538 Uncharacterized conser 99.5 5.1E-12 1.1E-16 122.6 21.1 249 51-338 14-277 (1081)
183 KOG0290 Conserved WD40 repeat- 99.5 2.9E-11 6.2E-16 106.9 23.5 273 2-298 47-355 (364)
184 KOG0647 mRNA export protein (c 99.5 9E-12 2E-16 110.6 20.4 255 50-338 28-307 (347)
185 KOG4283 Transcription-coupled 99.5 3.8E-12 8.3E-17 112.5 17.3 205 86-315 39-276 (397)
186 KOG1524 WD40 repeat-containing 99.5 4E-12 8.8E-17 120.6 18.4 198 61-299 76-276 (737)
187 PF10282 Lactonase: Lactonase, 99.5 6.2E-09 1.3E-13 100.5 40.5 261 24-315 11-322 (345)
188 COG2319 FOG: WD40 repeat [Gene 99.5 1.4E-09 3.1E-14 105.8 36.9 296 2-336 68-381 (466)
189 KOG1963 WD40 repeat protein [G 99.5 4.4E-11 9.5E-16 119.9 25.8 288 2-316 208-539 (792)
190 KOG0308 Conserved WD40 repeat- 99.4 1.1E-12 2.3E-17 127.1 13.6 208 113-342 42-273 (735)
191 KOG0270 WD40 repeat-containing 99.4 3.7E-11 8E-16 111.8 23.2 229 61-317 192-451 (463)
192 PRK04043 tolB translocation pr 99.4 1.6E-10 3.4E-15 113.8 28.8 222 25-273 168-404 (419)
193 KOG0290 Conserved WD40 repeat- 99.4 4.5E-11 9.8E-16 105.7 21.7 275 35-338 34-349 (364)
194 KOG0307 Vesicle coat complex C 99.4 1.1E-12 2.5E-17 134.5 13.5 244 3-271 68-329 (1049)
195 KOG0303 Actin-binding protein 99.4 6.9E-11 1.5E-15 108.5 22.5 208 86-318 77-297 (472)
196 KOG2394 WD40 protein DMR-N9 [G 99.4 1.3E-11 2.8E-16 117.3 18.2 90 195-289 290-384 (636)
197 KOG0321 WD40 repeat-containing 99.4 2E-11 4.4E-16 118.1 19.4 286 5-315 55-391 (720)
198 KOG1007 WD repeat protein TSSC 99.4 2.5E-11 5.5E-16 107.2 18.2 249 69-342 39-348 (370)
199 KOG2139 WD40 repeat protein [G 99.4 2.1E-10 4.6E-15 104.3 23.7 266 3-299 102-421 (445)
200 KOG1524 WD40 repeat-containing 99.4 3.5E-11 7.7E-16 114.3 19.4 175 2-222 107-281 (737)
201 KOG0267 Microtubule severing p 99.4 2.2E-12 4.7E-17 126.3 11.4 221 5-257 34-259 (825)
202 KOG1009 Chromatin assembly com 99.4 6.1E-11 1.3E-15 109.2 20.0 251 2-272 68-375 (434)
203 COG2319 FOG: WD40 repeat [Gene 99.4 3.4E-09 7.4E-14 103.2 33.6 277 2-316 158-443 (466)
204 KOG0294 WD40 repeat-containing 99.4 1E-10 2.3E-15 104.5 20.1 191 1-271 85-283 (362)
205 COG4946 Uncharacterized protei 99.4 4.3E-09 9.4E-14 99.1 31.7 145 189-340 353-504 (668)
206 KOG0644 Uncharacterized conser 99.4 4.5E-12 9.8E-17 125.9 12.7 293 2-340 193-494 (1113)
207 KOG0301 Phospholipase A2-activ 99.4 2E-10 4.3E-15 112.3 23.5 250 50-337 15-272 (745)
208 KOG2445 Nuclear pore complex c 99.4 3.7E-10 8E-15 100.7 22.1 250 48-315 12-318 (361)
209 KOG4227 WD40 repeat protein [G 99.3 5E-10 1.1E-14 102.7 23.2 278 2-314 59-386 (609)
210 KOG0270 WD40 repeat-containing 99.3 1.9E-10 4E-15 107.2 20.7 235 10-272 191-452 (463)
211 KOG1445 Tumor-specific antigen 99.3 5.2E-11 1.1E-15 115.1 17.4 235 57-315 587-844 (1012)
212 TIGR02658 TTQ_MADH_Hv methylam 99.3 2.4E-08 5.2E-13 94.8 35.3 262 26-322 27-338 (352)
213 KOG2111 Uncharacterized conser 99.3 1.6E-09 3.6E-14 97.1 24.7 236 54-320 10-261 (346)
214 KOG1036 Mitotic spindle checkp 99.3 8.1E-10 1.8E-14 98.6 22.5 256 49-342 13-292 (323)
215 KOG1034 Transcriptional repres 99.3 5.1E-10 1.1E-14 100.7 21.0 238 50-314 39-382 (385)
216 PF10282 Lactonase: Lactonase, 99.3 3.2E-08 7E-13 95.5 35.1 262 3-287 40-345 (345)
217 KOG0322 G-protein beta subunit 99.3 2E-10 4.4E-15 100.3 17.1 272 2-314 17-322 (323)
218 KOG1587 Cytoplasmic dynein int 99.3 1.9E-09 4.1E-14 107.7 26.5 261 26-317 222-518 (555)
219 KOG0649 WD40 repeat protein [G 99.3 1.4E-09 3.1E-14 94.1 21.8 262 2-337 13-298 (325)
220 KOG1007 WD repeat protein TSSC 99.3 3.3E-10 7.2E-15 100.2 17.5 246 2-317 66-363 (370)
221 KOG0303 Actin-binding protein 99.3 6.5E-11 1.4E-15 108.7 13.4 117 194-321 80-210 (472)
222 TIGR02658 TTQ_MADH_Hv methylam 99.3 8.1E-08 1.7E-12 91.2 33.7 245 7-277 53-338 (352)
223 KOG0642 Cell-cycle nuclear pro 99.3 1.7E-10 3.6E-15 110.5 15.3 247 2-279 297-571 (577)
224 COG2706 3-carboxymuconate cycl 99.2 9.6E-08 2.1E-12 87.7 32.2 270 24-316 14-322 (346)
225 PF00930 DPPIV_N: Dipeptidyl p 99.2 1.4E-08 3E-13 98.3 28.2 274 8-300 1-348 (353)
226 KOG1354 Serine/threonine prote 99.2 1.2E-09 2.5E-14 99.0 18.6 264 1-314 27-358 (433)
227 KOG0771 Prolactin regulatory e 99.2 6.6E-10 1.4E-14 103.1 17.0 192 94-316 148-355 (398)
228 PF02239 Cytochrom_D1: Cytochr 99.2 8.3E-09 1.8E-13 99.8 25.6 296 11-342 5-333 (369)
229 KOG2321 WD40 repeat protein [G 99.2 1.8E-09 4E-14 103.7 20.3 271 26-342 7-331 (703)
230 KOG2394 WD40 protein DMR-N9 [G 99.2 9.1E-11 2E-15 111.6 10.5 130 195-334 219-384 (636)
231 KOG1034 Transcriptional repres 99.2 4E-10 8.8E-15 101.3 13.4 226 2-269 138-383 (385)
232 KOG3881 Uncharacterized conser 99.2 1.4E-08 3.1E-13 93.5 23.6 213 60-336 115-343 (412)
233 KOG0300 WD40 repeat-containing 99.2 1.1E-09 2.3E-14 98.1 15.6 235 2-270 193-477 (481)
234 KOG0321 WD40 repeat-containing 99.2 3.9E-09 8.5E-14 102.6 20.7 240 2-271 103-393 (720)
235 KOG1587 Cytoplasmic dynein int 99.2 6E-09 1.3E-13 104.1 22.1 244 2-270 245-517 (555)
236 KOG0650 WD40 repeat nucleolar 99.2 2.1E-09 4.5E-14 103.7 17.4 234 86-340 396-666 (733)
237 KOG1272 WD40-repeat-containing 99.2 2.8E-10 6.2E-15 106.6 11.3 248 3-337 133-392 (545)
238 KOG1188 WD40 repeat protein [G 99.1 7.8E-09 1.7E-13 93.6 19.3 267 24-314 48-345 (376)
239 KOG1445 Tumor-specific antigen 99.1 2E-10 4.3E-15 111.2 8.5 108 195-313 627-748 (1012)
240 KOG1523 Actin-related protein 99.1 9.4E-09 2E-13 92.4 18.4 230 50-299 11-268 (361)
241 COG0823 TolB Periplasmic compo 99.1 3.8E-08 8.3E-13 96.5 24.4 190 91-300 193-390 (425)
242 KOG1517 Guanine nucleotide bin 99.1 3.3E-08 7.1E-13 101.4 23.3 284 3-317 1068-1383(1387)
243 KOG1523 Actin-related protein 99.0 5E-09 1.1E-13 94.1 14.2 154 138-314 7-175 (361)
244 KOG2110 Uncharacterized conser 99.0 2.1E-07 4.6E-12 85.4 23.9 252 26-314 68-329 (391)
245 PF15492 Nbas_N: Neuroblastoma 99.0 5.4E-07 1.2E-11 80.5 25.6 71 3-79 1-74 (282)
246 COG4946 Uncharacterized protei 99.0 2.9E-07 6.4E-12 87.0 24.9 133 27-169 383-516 (668)
247 KOG0322 G-protein beta subunit 99.0 3.6E-08 7.8E-13 86.5 17.1 262 50-342 15-311 (323)
248 KOG1310 WD40 repeat protein [G 99.0 3.6E-09 7.8E-14 101.2 11.5 114 2-127 53-179 (758)
249 COG2706 3-carboxymuconate cycl 99.0 1.9E-06 4.1E-11 79.3 27.4 253 69-342 15-308 (346)
250 KOG1188 WD40 repeat protein [G 98.9 4.4E-08 9.6E-13 88.8 16.0 240 3-268 74-345 (376)
251 KOG2111 Uncharacterized conser 98.9 7.5E-06 1.6E-10 74.0 29.9 227 4-270 10-257 (346)
252 KOG1334 WD40 repeat protein [G 98.9 1.7E-08 3.8E-13 95.3 13.7 289 2-316 145-467 (559)
253 COG0823 TolB Periplasmic compo 98.9 2.3E-07 4.9E-12 91.1 20.3 187 3-257 196-390 (425)
254 PF14583 Pectate_lyase22: Olig 98.9 1.8E-05 4E-10 75.0 31.6 288 6-313 42-379 (386)
255 KOG2321 WD40 repeat protein [G 98.9 7E-07 1.5E-11 86.3 22.2 268 3-299 55-333 (703)
256 PF04762 IKI3: IKI3 family; I 98.9 2.7E-06 5.9E-11 91.4 29.0 271 2-314 78-378 (928)
257 PF04762 IKI3: IKI3 family; I 98.8 3.1E-05 6.7E-10 83.4 33.6 289 4-317 214-566 (928)
258 PLN02919 haloacid dehalogenase 98.8 9.2E-06 2E-10 88.9 30.2 112 197-318 741-891 (1057)
259 KOG1517 Guanine nucleotide bin 98.8 7.3E-07 1.6E-11 91.8 19.2 232 10-271 1122-1383(1387)
260 KOG1240 Protein kinase contain 98.7 2.8E-06 6.1E-11 88.9 23.0 257 31-318 1034-1337(1431)
261 PF00930 DPPIV_N: Dipeptidyl p 98.7 1.4E-05 3.1E-10 77.4 26.2 234 2-255 45-346 (353)
262 COG5170 CDC55 Serine/threonine 98.7 5.3E-07 1.1E-11 81.0 13.8 273 1-314 28-366 (460)
263 KOG4547 WD40 repeat-containing 98.7 2.3E-06 4.9E-11 83.2 18.8 111 194-316 101-221 (541)
264 PF07433 DUF1513: Protein of u 98.7 3.3E-05 7.2E-10 71.2 25.5 240 4-299 9-276 (305)
265 KOG0642 Cell-cycle nuclear pro 98.6 6.1E-07 1.3E-11 86.6 13.8 241 49-317 294-563 (577)
266 KOG1920 IkappaB kinase complex 98.6 3.4E-05 7.5E-10 81.1 26.8 261 2-292 71-347 (1265)
267 KOG4227 WD40 repeat protein [G 98.6 1E-06 2.2E-11 81.4 13.1 138 193-341 54-211 (609)
268 KOG2041 WD40 repeat protein [G 98.6 5.4E-06 1.2E-10 82.2 18.8 191 1-213 117-326 (1189)
269 KOG0644 Uncharacterized conser 98.5 2.4E-07 5.3E-12 93.0 7.7 257 49-340 190-454 (1113)
270 PF08450 SGL: SMP-30/Gluconola 98.5 0.00055 1.2E-08 62.7 29.0 223 54-299 4-245 (246)
271 PF11768 DUF3312: Protein of u 98.5 0.00036 7.8E-09 68.7 28.6 184 146-339 150-372 (545)
272 PF02897 Peptidase_S9_N: Proly 98.5 0.0003 6.5E-09 69.8 29.1 254 3-274 127-409 (414)
273 KOG0649 WD40 repeat protein [G 98.5 8.6E-06 1.9E-10 71.0 14.7 121 187-321 53-193 (325)
274 KOG1272 WD40-repeat-containing 98.4 5.3E-07 1.1E-11 85.1 7.5 173 114-316 147-324 (545)
275 KOG2041 WD40 repeat protein [G 98.4 3E-05 6.6E-10 77.1 19.1 261 2-298 17-327 (1189)
276 KOG3881 Uncharacterized conser 98.4 6.6E-05 1.4E-09 69.8 18.9 200 13-244 117-339 (412)
277 KOG1334 WD40 repeat protein [G 98.3 1.3E-05 2.9E-10 76.3 14.4 274 48-348 141-461 (559)
278 PF14583 Pectate_lyase22: Olig 98.3 0.0012 2.6E-08 63.0 26.6 255 32-299 16-302 (386)
279 PF06433 Me-amine-dh_H: Methyl 98.3 0.0014 3E-08 61.4 26.3 252 4-280 40-331 (342)
280 KOG1064 RAVE (regulator of V-A 98.3 3.5E-06 7.7E-11 91.2 10.1 189 86-317 2204-2400(2439)
281 KOG1310 WD40 repeat protein [G 98.3 7.5E-06 1.6E-10 79.0 10.6 139 194-343 49-219 (758)
282 KOG1920 IkappaB kinase complex 98.2 0.00028 6E-09 74.6 22.2 258 51-338 70-348 (1265)
283 KOG1240 Protein kinase contain 98.2 0.00012 2.5E-09 77.3 18.9 207 90-318 1048-1276(1431)
284 PF08450 SGL: SMP-30/Gluconola 98.2 0.0039 8.4E-08 57.1 27.5 223 4-254 4-243 (246)
285 PF04053 Coatomer_WDAD: Coatom 98.2 0.00011 2.3E-09 72.6 18.1 163 144-342 35-213 (443)
286 KOG1409 Uncharacterized conser 98.2 0.00045 9.7E-09 63.5 20.3 72 194-270 196-271 (404)
287 PF11768 DUF3312: Protein of u 98.2 0.00028 6.1E-09 69.4 20.4 140 118-269 184-329 (545)
288 PRK02888 nitrous-oxide reducta 98.2 0.0005 1.1E-08 69.3 22.6 121 195-320 320-479 (635)
289 KOG1354 Serine/threonine prote 98.2 4.4E-05 9.5E-10 69.9 13.3 247 50-342 26-347 (433)
290 PF07433 DUF1513: Protein of u 98.1 0.0013 2.7E-08 60.9 22.2 213 5-256 56-276 (305)
291 KOG4547 WD40 repeat-containing 98.1 0.00033 7.1E-09 68.6 18.6 188 7-224 1-217 (541)
292 PRK02888 nitrous-oxide reducta 98.1 0.0054 1.2E-07 62.1 27.5 102 203-316 284-405 (635)
293 KOG0280 Uncharacterized conser 98.1 0.00019 4E-09 64.6 15.1 132 195-335 165-312 (339)
294 PF00400 WD40: WD domain, G-be 98.1 1.4E-05 3E-10 50.2 5.8 36 272-313 2-39 (39)
295 KOG2695 WD40 repeat protein [G 98.0 2.3E-05 5.1E-10 71.7 8.8 136 176-324 235-386 (425)
296 PF04053 Coatomer_WDAD: Coatom 98.0 0.0015 3.2E-08 64.7 22.0 128 2-160 35-163 (443)
297 PRK13616 lipoprotein LpqB; Pro 98.0 0.001 2.2E-08 68.3 21.2 164 91-269 350-527 (591)
298 PLN02919 haloacid dehalogenase 98.0 0.0026 5.7E-08 70.1 25.2 130 199-337 686-871 (1057)
299 KOG1645 RING-finger-containing 98.0 0.0009 1.9E-08 62.8 18.1 72 1-81 195-269 (463)
300 PRK10115 protease 2; Provision 98.0 0.013 2.8E-07 61.8 29.1 250 2-272 129-397 (686)
301 KOG4532 WD40-like repeat conta 98.0 0.0036 7.7E-08 55.9 20.6 235 25-295 51-306 (344)
302 PF15492 Nbas_N: Neuroblastoma 98.0 0.0026 5.6E-08 57.4 19.9 40 235-277 228-267 (282)
303 KOG0974 WD-repeat protein WDR6 97.9 0.00017 3.6E-09 74.9 13.8 114 191-318 171-291 (967)
304 KOG3914 WD repeat protein WDR4 97.9 0.00025 5.5E-09 66.3 13.1 87 187-279 143-233 (390)
305 PF02897 Peptidase_S9_N: Proly 97.9 0.013 2.8E-07 58.2 26.4 242 72-327 109-370 (414)
306 PF00400 WD40: WD domain, G-be 97.9 5.2E-05 1.1E-09 47.5 5.9 31 234-267 9-39 (39)
307 KOG0974 WD-repeat protein WDR6 97.8 0.00081 1.7E-08 70.0 16.8 191 7-271 95-290 (967)
308 PF06433 Me-amine-dh_H: Methyl 97.8 0.03 6.5E-07 52.6 27.6 262 26-322 17-328 (342)
309 KOG0309 Conserved WD40 repeat- 97.8 0.00024 5.3E-09 71.2 11.8 284 2-322 27-346 (1081)
310 KOG3617 WD40 and TPR repeat-co 97.8 0.00079 1.7E-08 68.7 14.7 111 5-127 21-132 (1416)
311 KOG1912 WD40 repeat protein [G 97.7 0.0027 5.9E-08 64.3 17.8 258 4-314 20-303 (1062)
312 PRK13616 lipoprotein LpqB; Pro 97.7 0.0016 3.4E-08 67.0 16.7 160 143-318 351-530 (591)
313 KOG1064 RAVE (regulator of V-A 97.7 0.00044 9.5E-09 75.8 12.9 196 2-279 2211-2408(2439)
314 KOG0280 Uncharacterized conser 97.7 0.0074 1.6E-07 54.6 18.3 129 198-337 124-266 (339)
315 KOG0882 Cyclophilin-related pe 97.7 0.0017 3.8E-08 61.7 14.9 245 10-277 19-313 (558)
316 PF04841 Vps16_N: Vps16, N-ter 97.7 0.047 1E-06 54.0 25.9 71 5-79 34-110 (410)
317 KOG1912 WD40 repeat protein [G 97.5 0.0051 1.1E-07 62.4 16.8 301 5-337 236-577 (1062)
318 KOG3914 WD repeat protein WDR4 97.5 0.0019 4.2E-08 60.5 12.8 81 235-325 150-234 (390)
319 KOG3617 WD40 and TPR repeat-co 97.5 0.00029 6.3E-09 71.7 7.8 110 200-318 20-136 (1416)
320 KOG1832 HIV-1 Vpr-binding prot 97.5 0.00022 4.8E-09 72.9 6.6 268 2-314 1104-1397(1516)
321 PF06977 SdiA-regulated: SdiA- 97.4 0.04 8.6E-07 50.2 19.9 196 2-224 24-247 (248)
322 KOG4532 WD40-like repeat conta 97.4 0.0054 1.2E-07 54.8 13.5 115 215-338 134-264 (344)
323 KOG1832 HIV-1 Vpr-binding prot 97.4 0.0002 4.4E-09 73.1 5.0 202 90-323 1101-1320(1516)
324 COG3386 Gluconolactonase [Carb 97.4 0.076 1.6E-06 50.0 21.6 119 176-299 144-275 (307)
325 KOG2114 Vacuolar assembly/sort 97.3 0.076 1.6E-06 54.9 22.1 227 55-298 29-272 (933)
326 TIGR03300 assembly_YfgL outer 97.3 0.21 4.5E-06 48.8 26.5 95 215-322 247-346 (377)
327 TIGR03300 assembly_YfgL outer 97.3 0.17 3.7E-06 49.4 24.3 92 206-312 278-376 (377)
328 COG3490 Uncharacterized protei 97.1 0.0084 1.8E-07 54.2 11.8 128 195-323 67-218 (366)
329 COG5170 CDC55 Serine/threonine 97.0 0.015 3.2E-07 53.0 12.5 234 50-315 27-309 (460)
330 KOG4640 Anaphase-promoting com 96.9 0.0051 1.1E-07 61.1 9.4 88 196-288 21-114 (665)
331 COG3204 Uncharacterized protei 96.8 0.37 7.9E-06 44.2 19.8 148 2-160 88-251 (316)
332 KOG0309 Conserved WD40 repeat- 96.8 0.016 3.6E-07 58.6 12.0 270 51-342 26-317 (1081)
333 KOG2066 Vacuolar assembly/sort 96.7 0.021 4.5E-07 58.4 12.3 122 204-340 80-221 (846)
334 PF10647 Gmad1: Lipoprotein Lp 96.7 0.2 4.3E-06 46.0 18.1 156 143-317 25-199 (253)
335 PF04841 Vps16_N: Vps16, N-ter 96.7 0.72 1.6E-05 45.6 22.8 36 119-158 62-97 (410)
336 PF15390 DUF4613: Domain of un 96.7 0.068 1.5E-06 53.2 15.1 149 53-226 23-185 (671)
337 COG3391 Uncharacterized conser 96.7 0.74 1.6E-05 45.1 32.2 283 27-341 12-315 (381)
338 PF00780 CNH: CNH domain; Int 96.7 0.55 1.2E-05 43.5 29.0 231 10-284 6-270 (275)
339 PF06977 SdiA-regulated: SdiA- 96.6 0.52 1.1E-05 43.0 20.2 175 143-336 23-233 (248)
340 PF10647 Gmad1: Lipoprotein Lp 96.6 0.62 1.3E-05 42.8 20.8 146 2-160 26-183 (253)
341 PRK10115 protease 2; Provision 96.5 1.4 3.1E-05 46.6 29.5 243 53-316 130-395 (686)
342 KOG4640 Anaphase-promoting com 96.5 0.014 3E-07 58.1 9.1 89 238-336 22-117 (665)
343 KOG4714 Nucleoporin [Nuclear s 96.5 0.098 2.1E-06 46.8 13.4 70 197-270 181-255 (319)
344 KOG0882 Cyclophilin-related pe 96.5 0.025 5.4E-07 54.1 10.3 119 214-341 117-257 (558)
345 KOG1645 RING-finger-containing 96.5 0.0081 1.8E-07 56.6 6.8 74 235-316 192-267 (463)
346 KOG4190 Uncharacterized conser 96.4 0.022 4.8E-07 55.7 9.9 111 195-318 876-991 (1034)
347 COG3391 Uncharacterized conser 96.4 0.15 3.2E-06 50.0 15.9 137 199-342 77-224 (381)
348 KOG2114 Vacuolar assembly/sort 96.3 1.3 2.8E-05 46.3 21.7 220 6-255 30-272 (933)
349 KOG2695 WD40 repeat protein [G 96.3 0.022 4.8E-07 52.7 8.4 88 187-280 290-387 (425)
350 KOG3621 WD40 repeat-containing 96.2 0.11 2.3E-06 52.7 13.6 196 55-276 39-252 (726)
351 smart00320 WD40 WD40 repeats. 96.1 0.022 4.8E-07 33.8 5.4 27 281-313 14-40 (40)
352 COG3386 Gluconolactonase [Carb 96.0 1.4 3E-05 41.6 21.0 127 196-333 111-263 (307)
353 PF07995 GSDH: Glucose / Sorbo 95.9 1.7 3.7E-05 41.6 25.1 243 51-299 4-325 (331)
354 PF12894 Apc4_WD40: Anaphase-p 95.8 0.022 4.8E-07 37.1 4.5 34 281-320 13-46 (47)
355 KOG4190 Uncharacterized conser 95.8 0.041 8.8E-07 54.0 8.1 180 115-318 754-951 (1034)
356 PF15390 DUF4613: Domain of un 95.7 0.57 1.2E-05 47.0 15.9 111 195-316 56-187 (671)
357 smart00320 WD40 WD40 repeats. 95.7 0.038 8.2E-07 32.7 5.3 30 235-267 11-40 (40)
358 PF13360 PQQ_2: PQQ-like domai 95.7 1.5 3.4E-05 39.2 26.0 98 207-319 122-235 (238)
359 KOG2066 Vacuolar assembly/sort 95.6 0.25 5.4E-06 50.9 13.0 129 10-160 82-223 (846)
360 KOG4714 Nucleoporin [Nuclear s 95.5 0.02 4.4E-07 51.0 4.7 76 237-320 180-259 (319)
361 KOG3621 WD40 repeat-containing 95.4 0.061 1.3E-06 54.4 8.1 109 197-316 35-155 (726)
362 COG5290 IkappaB kinase complex 95.1 0.18 3.9E-06 51.9 10.4 104 4-108 251-354 (1243)
363 PF13360 PQQ_2: PQQ-like domai 95.1 2.4 5.1E-05 38.0 23.0 66 8-82 33-98 (238)
364 PF03178 CPSF_A: CPSF A subuni 95.0 3.4 7.5E-05 39.3 21.0 108 195-316 88-203 (321)
365 PF12894 Apc4_WD40: Anaphase-p 95.0 0.08 1.7E-06 34.5 5.1 34 236-273 11-44 (47)
366 TIGR02171 Fb_sc_TIGR02171 Fibr 94.8 1.4 3E-05 46.9 16.2 243 26-283 329-601 (912)
367 KOG1275 PAB-dependent poly(A) 94.8 0.14 3E-06 53.5 8.6 95 215-314 153-253 (1118)
368 COG3490 Uncharacterized protei 94.7 3.4 7.4E-05 37.9 20.2 232 34-278 56-319 (366)
369 KOG1275 PAB-dependent poly(A) 94.7 0.6 1.3E-05 49.0 12.8 99 206-314 186-341 (1118)
370 PRK11138 outer membrane biogen 94.7 4.9 0.00011 39.5 23.9 92 207-313 294-392 (394)
371 PF08553 VID27: VID27 cytoplas 94.5 0.79 1.7E-05 48.6 13.8 123 176-314 505-646 (794)
372 PF10313 DUF2415: Uncharacteri 94.5 0.12 2.7E-06 32.6 4.8 31 1-36 2-35 (43)
373 COG3204 Uncharacterized protei 94.4 1.2 2.6E-05 41.0 12.7 136 195-340 85-248 (316)
374 KOG2079 Vacuolar assembly/sort 94.2 0.16 3.5E-06 54.0 7.7 83 214-299 104-195 (1206)
375 PF08553 VID27: VID27 cytoplas 94.0 1.6 3.4E-05 46.4 14.7 123 25-161 503-638 (794)
376 TIGR02604 Piru_Ver_Nterm putat 94.0 3.5 7.5E-05 40.2 16.4 98 196-298 72-202 (367)
377 COG1506 DAP2 Dipeptidyl aminop 93.9 9.7 0.00021 40.0 28.0 291 3-314 16-343 (620)
378 COG5290 IkappaB kinase complex 93.7 1.8 3.8E-05 45.1 13.7 100 195-298 246-355 (1243)
379 KOG2377 Uncharacterized conser 93.7 2 4.3E-05 41.9 13.3 99 194-299 65-173 (657)
380 PF12234 Rav1p_C: RAVE protein 93.7 0.97 2.1E-05 46.6 12.1 95 208-314 41-155 (631)
381 KOG1409 Uncharacterized conser 93.6 6.6 0.00014 36.9 19.1 96 215-319 171-274 (404)
382 PF14783 BBS2_Mid: Ciliary BBS 93.4 3 6.5E-05 32.6 12.6 98 148-265 9-110 (111)
383 PF10214 Rrn6: RNA polymerase 93.3 6.3 0.00014 42.5 18.3 112 193-317 77-234 (765)
384 KOG2280 Vacuolar assembly/sort 92.9 4.9 0.00011 41.7 15.5 50 26-79 64-113 (829)
385 KOG2395 Protein involved in va 92.9 1.4 3E-05 43.7 11.1 127 176-314 357-499 (644)
386 PF05694 SBP56: 56kDa selenium 91.9 14 0.0003 36.4 25.7 231 60-299 86-393 (461)
387 KOG2395 Protein involved in va 91.6 2.4 5.1E-05 42.1 11.0 121 26-160 356-490 (644)
388 PF05096 Glu_cyclase_2: Glutam 91.5 11 0.00024 34.5 14.8 74 3-82 48-122 (264)
389 PF05096 Glu_cyclase_2: Glutam 91.5 7.2 0.00016 35.7 13.5 79 10-100 100-184 (264)
390 KOG3630 Nuclear pore complex, 91.1 1.2 2.6E-05 48.0 9.1 139 192-338 97-257 (1405)
391 TIGR02276 beta_rpt_yvtn 40-res 91.0 1.6 3.5E-05 27.0 6.6 40 246-287 1-41 (42)
392 KOG1008 Uncharacterized conser 90.9 0.1 2.2E-06 52.3 1.2 147 3-160 106-262 (783)
393 PF07676 PD40: WD40-like Beta 90.5 0.69 1.5E-05 28.4 4.4 29 281-312 10-38 (39)
394 PF14783 BBS2_Mid: Ciliary BBS 90.3 7.4 0.00016 30.4 13.9 55 209-270 17-72 (111)
395 PF07569 Hira: TUP1-like enhan 90.3 1.9 4.1E-05 38.6 8.7 66 242-317 16-97 (219)
396 PF07569 Hira: TUP1-like enhan 90.2 1.2 2.6E-05 39.8 7.4 68 5-77 16-94 (219)
397 KOG4649 PQQ (pyrrolo-quinoline 90.0 9.2 0.0002 34.7 12.3 100 204-314 19-122 (354)
398 KOG2079 Vacuolar assembly/sort 89.8 0.85 1.9E-05 48.8 6.8 69 2-77 133-202 (1206)
399 TIGR02171 Fb_sc_TIGR02171 Fibr 89.8 2.6 5.7E-05 44.9 10.3 76 176-251 330-413 (912)
400 KOG4649 PQQ (pyrrolo-quinoline 89.7 16 0.00034 33.3 22.2 71 11-91 63-134 (354)
401 PF07676 PD40: WD40-like Beta 89.6 1.1 2.3E-05 27.6 4.7 31 236-266 8-38 (39)
402 PF10313 DUF2415: Uncharacteri 88.4 1.7 3.6E-05 27.6 4.8 31 237-270 1-34 (43)
403 KOG2280 Vacuolar assembly/sort 88.4 31 0.00067 36.2 16.3 170 119-315 65-246 (829)
404 PF05694 SBP56: 56kDa selenium 88.4 8.3 0.00018 37.8 11.8 146 5-160 186-392 (461)
405 TIGR02276 beta_rpt_yvtn 40-res 87.6 3.6 7.8E-05 25.4 6.3 33 9-45 1-33 (42)
406 KOG2444 WD40 repeat protein [G 87.6 2.3 5E-05 37.6 6.9 86 215-315 76-166 (238)
407 PF10168 Nup88: Nuclear pore c 87.4 2.4 5.3E-05 44.8 8.4 69 237-315 85-179 (717)
408 PF10168 Nup88: Nuclear pore c 87.3 14 0.0003 39.4 13.8 33 236-271 146-181 (717)
409 PF14870 PSII_BNR: Photosynthe 86.9 28 0.0006 32.8 14.3 93 235-337 143-245 (302)
410 PF03088 Str_synth: Strictosid 86.8 11 0.00024 28.2 9.4 41 259-299 35-76 (89)
411 KOG2247 WD40 repeat-containing 86.7 0.089 1.9E-06 51.2 -2.3 133 200-342 39-177 (615)
412 PF12657 TFIIIC_delta: Transcr 86.5 4.7 0.0001 34.5 8.4 31 281-317 87-123 (173)
413 KOG2247 WD40 repeat-containing 86.3 0.11 2.4E-06 50.7 -2.0 136 144-297 37-177 (615)
414 PF07995 GSDH: Glucose / Sorbo 86.2 14 0.0003 35.4 12.3 99 198-299 4-133 (331)
415 KOG3630 Nuclear pore complex, 85.5 19 0.00041 39.5 13.4 59 195-255 198-262 (1405)
416 PF14655 RAB3GAP2_N: Rab3 GTPa 85.3 8.8 0.00019 37.8 10.5 82 237-324 308-408 (415)
417 TIGR02604 Piru_Ver_Nterm putat 84.9 24 0.00052 34.3 13.5 140 197-342 15-201 (367)
418 KOG1008 Uncharacterized conser 82.8 0.71 1.5E-05 46.6 1.8 70 54-127 200-276 (783)
419 COG1506 DAP2 Dipeptidyl aminop 82.7 67 0.0015 33.8 26.5 56 2-66 62-117 (620)
420 KOG4499 Ca2+-binding protein R 82.7 36 0.00078 30.6 18.6 130 195-335 108-264 (310)
421 PF00780 CNH: CNH domain; Int 82.6 39 0.00085 31.0 24.1 61 60-128 6-66 (275)
422 TIGR03606 non_repeat_PQQ dehyd 81.2 63 0.0014 32.4 18.8 61 195-255 78-164 (454)
423 PF03178 CPSF_A: CPSF A subuni 80.9 51 0.0011 31.2 22.7 67 196-269 130-202 (321)
424 PF05935 Arylsulfotrans: Aryls 80.7 34 0.00073 34.7 13.0 76 217-298 126-208 (477)
425 PF14269 Arylsulfotran_2: Aryl 80.2 53 0.0011 30.9 16.9 68 238-314 145-219 (299)
426 KOG1897 Damage-specific DNA bi 80.1 96 0.0021 33.8 29.1 109 197-317 776-900 (1096)
427 PF14870 PSII_BNR: Photosynthe 80.1 54 0.0012 30.9 17.4 129 194-335 143-286 (302)
428 PF15359 CDV3: Carnitine defic 79.0 1.8 4E-05 34.8 2.6 16 377-392 83-98 (129)
429 PF14761 HPS3_N: Hermansky-Pud 78.4 48 0.001 29.4 14.0 48 218-265 37-91 (215)
430 PF01731 Arylesterase: Arylest 77.1 15 0.00032 27.4 6.8 32 237-270 54-85 (86)
431 TIGR03032 conserved hypothetic 77.0 50 0.0011 31.2 11.6 84 247-336 212-316 (335)
432 KOG1897 Damage-specific DNA bi 76.9 1.2E+02 0.0026 33.1 27.1 227 56-294 677-928 (1096)
433 PF12657 TFIIIC_delta: Transcr 76.4 12 0.00026 32.0 7.3 26 53-79 8-33 (173)
434 KOG4460 Nuclear pore complex, 76.0 13 0.00028 37.2 7.9 69 239-316 106-199 (741)
435 TIGR03606 non_repeat_PQQ dehyd 75.3 94 0.002 31.2 18.2 51 50-101 31-89 (454)
436 COG5167 VID27 Protein involved 75.2 49 0.0011 33.2 11.5 122 26-160 490-622 (776)
437 PF01731 Arylesterase: Arylest 75.2 16 0.00035 27.2 6.6 48 261-315 36-84 (86)
438 PLN00033 photosystem II stabil 75.1 89 0.0019 30.8 17.7 102 189-298 274-389 (398)
439 PRK13684 Ycf48-like protein; P 74.8 81 0.0018 30.2 14.1 97 195-298 172-278 (334)
440 PF14655 RAB3GAP2_N: Rab3 GTPa 74.6 14 0.0003 36.5 7.9 40 2-46 310-349 (415)
441 PF11715 Nup160: Nucleoporin N 74.6 6.1 0.00013 40.8 5.8 37 3-44 218-258 (547)
442 COG1770 PtrB Protease II [Amin 73.5 1.2E+02 0.0026 31.6 27.9 60 3-67 132-191 (682)
443 PLN00033 photosystem II stabil 73.1 1E+02 0.0022 30.4 15.0 91 236-338 280-384 (398)
444 PF03088 Str_synth: Strictosid 72.3 37 0.0008 25.5 8.0 42 216-257 34-77 (89)
445 PF08596 Lgl_C: Lethal giant l 72.3 69 0.0015 31.5 12.2 71 234-314 84-172 (395)
446 COG1770 PtrB Protease II [Amin 70.3 1.4E+02 0.0031 31.1 27.4 204 54-275 133-354 (682)
447 PRK11138 outer membrane biogen 70.1 1.1E+02 0.0025 29.8 27.9 93 217-322 264-361 (394)
448 COG5167 VID27 Protein involved 69.4 56 0.0012 32.8 10.4 58 248-315 573-632 (776)
449 PF14727 PHTB1_N: PTHB1 N-term 68.9 1.3E+02 0.0027 29.9 15.5 108 194-314 70-203 (418)
450 KOG1520 Predicted alkaloid syn 68.4 47 0.001 32.0 9.6 87 210-298 190-283 (376)
451 PF13449 Phytase-like: Esteras 67.4 1.2E+02 0.0025 29.0 18.7 62 4-66 89-163 (326)
452 COG4257 Vgb Streptogramin lyas 67.4 1.1E+02 0.0023 28.4 13.0 112 177-299 85-208 (353)
453 PF15525 DUF4652: Domain of un 67.3 83 0.0018 27.2 11.0 74 206-279 68-158 (200)
454 KOG2444 WD40 repeat protein [G 65.5 21 0.00045 31.8 6.2 54 214-270 119-178 (238)
455 PF12234 Rav1p_C: RAVE protein 65.0 44 0.00095 34.9 9.4 69 193-268 70-155 (631)
456 KOG4499 Ca2+-binding protein R 63.1 1.2E+02 0.0025 27.5 15.3 88 198-289 160-263 (310)
457 PF10008 DUF2251: Uncharacteri 62.8 28 0.00061 26.3 5.6 26 54-79 59-85 (97)
458 KOG2100 Dipeptidyl aminopeptid 62.2 70 0.0015 34.5 10.7 107 148-257 103-227 (755)
459 KOG1983 Tomosyn and related SN 59.3 2.2E+02 0.0047 31.9 14.0 48 261-317 219-266 (993)
460 TIGR02608 delta_60_rpt delta-6 57.4 55 0.0012 22.0 5.8 48 239-293 3-50 (55)
461 COG5276 Uncharacterized conser 57.1 1.7E+02 0.0037 27.4 25.0 107 4-128 91-201 (370)
462 PF14761 HPS3_N: Hermansky-Pud 54.4 50 0.0011 29.2 6.6 48 249-299 29-79 (215)
463 KOG1230 Protein containing rep 53.3 2.3E+02 0.0051 27.8 15.0 78 220-299 155-251 (521)
464 COG3823 Glutamine cyclotransfe 52.0 1E+02 0.0023 27.3 8.0 130 13-159 104-246 (262)
465 KOG2377 Uncharacterized conser 51.3 2.7E+02 0.0058 27.9 20.2 159 55-232 28-190 (657)
466 PF10214 Rrn6: RNA polymerase 49.6 3.7E+02 0.0081 29.1 24.6 146 62-228 99-277 (765)
467 PF08596 Lgl_C: Lethal giant l 48.7 2.8E+02 0.006 27.3 21.5 97 210-318 228-338 (395)
468 KOG1916 Nuclear protein, conta 48.6 27 0.00059 37.4 4.7 70 196-268 181-264 (1283)
469 cd00216 PQQ_DH Dehydrogenases 47.4 3.2E+02 0.0069 27.7 26.8 101 214-323 306-433 (488)
470 PF07250 Glyoxal_oxid_N: Glyox 47.2 2.2E+02 0.0048 25.8 10.9 109 199-318 70-200 (243)
471 KOG2100 Dipeptidyl aminopeptid 47.0 4.1E+02 0.0088 28.8 20.8 45 25-69 72-116 (755)
472 PF07250 Glyoxal_oxid_N: Glyox 46.5 70 0.0015 29.1 6.6 80 220-299 47-137 (243)
473 PF10584 Proteasome_A_N: Prote 46.2 8.8 0.00019 20.7 0.5 9 6-14 7-15 (23)
474 KOG4305 RhoGEF GTPase [Signal 45.9 3.2E+02 0.0069 30.4 12.1 63 230-299 947-1013(1029)
475 smart00564 PQQ beta-propeller 45.5 56 0.0012 18.6 4.0 25 250-277 8-32 (33)
476 PF05787 DUF839: Bacterial pro 44.5 79 0.0017 32.4 7.3 20 281-300 503-522 (524)
477 PF05935 Arylsulfotrans: Aryls 43.9 3.6E+02 0.0078 27.3 18.7 118 147-280 153-312 (477)
478 PRK13614 lipoprotein LpqB; Pro 42.9 4.1E+02 0.0089 27.7 19.6 144 2-160 345-503 (573)
479 KOG1916 Nuclear protein, conta 42.6 14 0.0003 39.5 1.6 68 240-317 184-269 (1283)
480 PRK13615 lipoprotein LpqB; Pro 42.3 4.1E+02 0.009 27.5 13.4 75 195-269 416-502 (557)
481 PF13449 Phytase-like: Esteras 41.3 3.2E+02 0.0069 26.0 18.7 114 199-315 88-249 (326)
482 COG4590 ABC-type uncharacteriz 41.2 1.3E+02 0.0027 30.0 7.6 51 260-317 337-388 (733)
483 PF12768 Rax2: Cortical protei 40.7 3.1E+02 0.0067 25.6 10.8 93 221-317 18-123 (281)
484 KOG4460 Nuclear pore complex, 40.4 4.2E+02 0.0091 27.1 14.5 33 239-274 168-203 (741)
485 PRK13684 Ycf48-like protein; P 40.2 3.4E+02 0.0073 25.9 11.7 63 2-73 175-238 (334)
486 PF14939 DCAF15_WD40: DDB1-and 38.9 88 0.0019 27.6 5.7 39 4-42 35-81 (211)
487 PRK13613 lipoprotein LpqB; Pro 38.0 5E+02 0.011 27.2 21.5 186 2-208 365-564 (599)
488 KOG4325 Uncharacterized conser 37.0 32 0.0007 28.4 2.6 20 405-424 88-107 (212)
489 PF01436 NHL: NHL repeat; Int 36.3 80 0.0017 17.6 3.5 15 3-17 5-19 (28)
490 PF11715 Nup160: Nucleoporin N 34.2 96 0.0021 31.9 6.3 37 238-277 216-256 (547)
491 PHA03098 kelch-like protein; P 32.4 2.4E+02 0.0052 28.8 8.9 53 220-272 407-467 (534)
492 PF13418 Kelch_4: Galactose ox 32.2 53 0.0011 20.9 2.7 28 245-272 10-40 (49)
493 PF02095 Extensin_1: Extensin- 32.1 25 0.00055 14.8 0.7 6 381-386 2-7 (10)
494 PF14781 BBS2_N: Ciliary BBSom 31.3 2.9E+02 0.0063 22.5 10.9 74 236-320 47-130 (136)
495 PF05787 DUF839: Bacterial pro 31.1 1.6E+02 0.0034 30.3 7.0 18 50-67 502-519 (524)
496 smart00135 LY Low-density lipo 31.0 1.2E+02 0.0026 18.1 5.1 32 281-317 10-41 (43)
497 TIGR03075 PQQ_enz_alc_DH PQQ-d 30.4 3.2E+02 0.0069 28.1 9.2 78 219-299 441-523 (527)
498 PF10411 DsbC_N: Disulfide bon 28.7 73 0.0016 21.5 2.9 13 5-17 36-48 (57)
499 KOG3616 Selective LIM binding 28.5 1.3E+02 0.0027 32.0 5.6 88 238-337 16-110 (1636)
500 PF01011 PQQ: PQQ enzyme repea 28.0 1.4E+02 0.0031 17.9 4.0 22 259-280 8-29 (38)
No 1
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.6e-78 Score=567.18 Aligned_cols=350 Identities=46% Similarity=0.778 Sum_probs=319.3
Q ss_pred cceEEecCCCcEEEEEecCCCCCC-----CcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEe
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQE-----KNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFD 76 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d-----~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~ 76 (434)
++.|.|||.|+||.||++++...+ .++.+|+++++.....+..+.+ ..| +++||.|+.++|+...+++++|+
T Consensus 76 ~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q--~~W-~~qfs~dEsl~arlv~nev~f~~ 152 (566)
T KOG2315|consen 76 TYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQ--NGW-VPQFSIDESLAARLVSNEVQFYD 152 (566)
T ss_pred eeeeeecccccccccccccccccCCCCCCCceeeeeeccceehhheehhhh--cCc-ccccccchhhhhhhhcceEEEEe
Confidence 468999999999999998766443 5788999999766666666644 779 99999999999999999999999
Q ss_pred CCCCCCceeeeeecCCeeEEEEeCC-CCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCe
Q 013871 77 TTDFPKGILYRLRVPGVAAFEVSKA-PGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTG 155 (434)
Q Consensus 77 ~~~~~~~~~~~~~~~~v~~~~~sp~-~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~ 155 (434)
+.++.. ...+++.++|..+++||+ ....+|+|+|+.+|.|+.|+||.++...+.+++++++||+++.++|.||+.|+.
T Consensus 153 ~~~f~~-~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~ 231 (566)
T KOG2315|consen 153 LGSFKT-IQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTA 231 (566)
T ss_pred cCCccc-eeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCce
Confidence 998664 678999999999999999 457899999999999999999999965568999999999999999999999999
Q ss_pred EEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeEEeC
Q 013871 156 LLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELG 235 (434)
Q Consensus 156 l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~~~ 235 (434)
||+++++|+|+++++|||+++||++.+.|. ++.|+|.++||||++.|+|+|++|+||||+||++++|||++|+++++|+
T Consensus 232 LLvLastdVDktn~SYYGEq~Lyll~t~g~-s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~df~ 310 (566)
T KOG2315|consen 232 LLVLASTDVDKTNASYYGEQTLYLLATQGE-SVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVFDFP 310 (566)
T ss_pred EEEEEEEeecCCCccccccceEEEEEecCc-eEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEeEeCC
Confidence 999999999999999999999999999854 8999999999999999999999999999999999999999999999999
Q ss_pred CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec
Q 013871 236 SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN 315 (434)
Q Consensus 236 ~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~ 315 (434)
.+++|++.|||+|++|++|||||+.|.|+|||+.+.++|..+.+.+.+.++|+|||+||+||+++|||||||+|+||||+
T Consensus 311 egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 311 EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT 390 (566)
T ss_pred CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Cceeeeeecc-cceeeEEEcCCCCCCCCchhhhhccCcccccc
Q 013871 316 GSLFFKKMFD-KLFQAEWKPVSPDKFGDISELIKSVGSLKVAE 357 (434)
Q Consensus 316 g~~~~~~~~~-~~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~ 357 (434)
|.++++.++. |||++.|+|....++.. ..++..-.+.+.++
T Consensus 391 G~~l~~~~f~sEL~qv~W~P~~~~~~~~-~~i~~~~~~~~~~~ 432 (566)
T KOG2315|consen 391 GSLLHEKMFKSELLQVEWRPFNDKTGNE-EEITELEHPSKNPE 432 (566)
T ss_pred CceeehhhhhHhHhheeeeecCCcccch-hhhhhhcccccCCC
Confidence 9999999998 79999999998886654 34443333333333
No 2
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=100.00 E-value=1.3e-56 Score=416.11 Aligned_cols=360 Identities=27% Similarity=0.477 Sum_probs=312.7
Q ss_pred cceEEecCCCcEEEEEecCCC----------CCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCe
Q 013871 2 LLLLTCLRVGLIIQTFQKSST----------PQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNE 71 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~----------~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~ 71 (434)
|..+.|||.|+||+||++... ..+.++.|||..+|..+.+|......+..|+.++||.|++|+|+...+.
T Consensus 74 V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~s 153 (561)
T COG5354 74 VKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSS 153 (561)
T ss_pred ceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCe
Confidence 567899999999999997433 1235799999999999999988766556999999999999999999999
Q ss_pred EEEEe-CCCCCCceeeeeecCCeeEEEEeCCC-CCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEE
Q 013871 72 IQFFD-TTDFPKGILYRLRVPGVAAFEVSKAP-GSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNW 149 (434)
Q Consensus 72 i~v~~-~~~~~~~~~~~~~~~~v~~~~~sp~~-~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~w 149 (434)
++|++ ..+........++..++..|+|||.+ ...+|+|+|+..+.|++++||.++. +..+.++++++.+.+++.|
T Consensus 154 l~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~---~s~l~tk~lfk~~~~qLkW 230 (561)
T COG5354 154 LYIHEITDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPK---NSVLVTKNLFKVSGVQLKW 230 (561)
T ss_pred EEEEecCCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccC---CCeeeeeeeEeecccEEEE
Confidence 99999 55555556667788899999999984 4568999999999999999999997 8999999999999999999
Q ss_pred CCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccc
Q 013871 150 NRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR 229 (434)
Q Consensus 150 s~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~ 229 (434)
++.|++||+++.++. +++++|||+.+||++++.+. ...+.++..++|++++|+|.+++|++|+|.||..+.+||++++
T Consensus 231 ~~~g~~ll~l~~t~~-ksnKsyfgesnLyl~~~~e~-~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N 308 (561)
T COG5354 231 QVLGKYLLVLVMTHT-KSNKSYFGESNLYLLRITER-SIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN 308 (561)
T ss_pred ecCCceEEEEEEEee-ecccceeccceEEEEeeccc-ccceeccccccceeeeecccCCceeEEecccccceeecccccc
Confidence 999999999999988 99999999999999988754 6777766689999999999999999999999999999999999
Q ss_pred eeEEeCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC-EEEEEeeCCCceEEEECCCCCEEEEEEcCCceeeCCc
Q 013871 230 PILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG-KQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNG 308 (434)
Q Consensus 230 ~~~~~~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~-~~i~~~~~~~~~~~~wspdg~~l~tas~~prl~~D~~ 308 (434)
..+.+..+..|++.|||.+++++++||||+.|+|.|||.... +++..+.+.+...|.|||||+++.+++++||+|+|+.
T Consensus 309 l~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~ 388 (561)
T COG5354 309 LRFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNTSYCDWSPDGQFYDTDTTSEKLRVDNS 388 (561)
T ss_pred eEEecCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCCceEeeccCCceEEEecCCCcccccCcc
Confidence 988999999999999999999999999999999999998876 5666899999999999999999999999999999999
Q ss_pred EEEEeecCceeeeeecccceeeEEEcCCCCCCCCchhhhhccCccccccccccCCCCcccCCCCCCCCCCCCCccCCCCc
Q 013871 309 IKIFHHNGSLFFKKMFDKLFQAEWKPVSPDKFGDISELIKSVGSLKVAETKSQGSGSASRKAAPSNPTATKPAAYRPPHA 388 (434)
Q Consensus 309 i~iw~~~g~~~~~~~~~~~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~pp~~ 388 (434)
|+|||+.|..++ +++++.|+|..++...... ++.. +++. ++ ......++|+||++
T Consensus 389 i~l~~v~g~~~f-----el~~~~W~p~~~~~ttsSs----~~~h-~~~~------~~---------~~~k~~Ga~~~e~~ 443 (561)
T COG5354 389 IKLWDVYGAKVF-----ELTNITWDPSGQYVTTSSS----CPKH-KVEH------GY---------KIFKIAGALYPEEA 443 (561)
T ss_pred eEEEEecCchhh-----hhhhccccCCcccceeecc----CCCC-cccc------cc---------ccccccccccChhh
Confidence 999999999877 7999999997666554321 1110 0111 01 12455679999999
Q ss_pred CCh
Q 013871 389 KQA 391 (434)
Q Consensus 389 ~~~ 391 (434)
|+.
T Consensus 444 rg~ 446 (561)
T COG5354 444 RGG 446 (561)
T ss_pred hcc
Confidence 964
No 3
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2e-45 Score=344.27 Aligned_cols=340 Identities=23% Similarity=0.439 Sum_probs=286.6
Q ss_pred cceEEecCCCcEEEEEecCCCC------CCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEE
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTP------QEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFF 75 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~------~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~ 75 (434)
|..+.|||+.+||+|+++.... +...++|||+.+|...++|.........|+.+.||.|++|||++..+.|.||
T Consensus 252 Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIy 331 (698)
T KOG2314|consen 252 VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIY 331 (698)
T ss_pred ceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccceEEEE
Confidence 5678999999999999964332 2368999999999999999874333478999999999999999999999999
Q ss_pred eCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCe
Q 013871 76 DTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTG 155 (434)
Q Consensus 76 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~ 155 (434)
+.+.+.......+.+++|+.|+|||. +..||+|+|+....|+++.|..+|. ++.|+++..|+...|.|.|..+|.+
T Consensus 332 Etpsf~lld~Kslki~gIr~FswsP~-~~llAYwtpe~~~~parvtL~evPs---~~~iRt~nlfnVsDckLhWQk~gdy 407 (698)
T KOG2314|consen 332 ETPSFMLLDKKSLKISGIRDFSWSPT-SNLLAYWTPETNNIPARVTLMEVPS---KREIRTKNLFNVSDCKLHWQKSGDY 407 (698)
T ss_pred ecCceeeecccccCCccccCcccCCC-cceEEEEcccccCCcceEEEEecCc---cceeeeccceeeeccEEEeccCCcE
Confidence 99998877778899999999999999 8999999999999999999999999 9999999999999999999999999
Q ss_pred EEEEEEecccccCceeecceeEEEEeeCCcceeeeecC---CCCCeEEEEECcCCCEEEEEEccCCC-eEEEEeccc---
Q 013871 156 LLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR---KEGPVHDVQWSYSGSEFAVVYGFMPA-SATIFNKKC--- 228 (434)
Q Consensus 156 l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~---~~~~i~~v~wspdg~~~av~~g~~~~-~v~l~d~~~--- 228 (434)
||+-+........+. ..+.+++....+..+++. -..+|..++|.|.|+.|++++|.... ++.+|..+.
T Consensus 408 LcvkvdR~tK~~~~g-----~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~ 482 (698)
T KOG2314|consen 408 LCVKVDRHTKSKVKG-----QFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIK 482 (698)
T ss_pred EEEEEEeeccccccc-----eEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCC
Confidence 998754422111122 223344444444555543 36789999999999999999998665 788887652
Q ss_pred --ceeEEeCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEcc--CCEEEEEeeCCCceEEEECCCCCEEEEEEcCCcee
Q 013871 229 --RPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV--DGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQ 304 (434)
Q Consensus 229 --~~~~~~~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~--~~~~i~~~~~~~~~~~~wspdg~~l~tas~~prl~ 304 (434)
..+..+.....|++.|||.|+++++++..+..|+++++|+. +.+.+....+...+.+.|.|.|||++|+++.+|+.
T Consensus 483 ~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~wrhk 562 (698)
T KOG2314|consen 483 KPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSSSWRHK 562 (698)
T ss_pred chhhhhhhcccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccccccccceECCCCCEEEEeeehhhhc
Confidence 33556678889999999999999999987778999999998 55667777777778899999999999999999999
Q ss_pred eCCcEEEEeecCceeeeeecccceeeEEEcCCCCCCCCc--hhhhhcc
Q 013871 305 IDNGIKIFHHNGSLFFKKMFDKLFQAEWKPVSPDKFGDI--SELIKSV 350 (434)
Q Consensus 305 ~D~~i~iw~~~g~~~~~~~~~~~~~~~w~p~~~~~~~~~--~~~~~~~ 350 (434)
+|++++||++.|+++.+...+++.|+.|||.||.+++.- .++.|++
T Consensus 563 ~d~GYri~tfqGrll~~~~i~~f~qF~WRPRPps~LS~e~~KkIkKnL 610 (698)
T KOG2314|consen 563 VDNGYRIFTFQGRLLKEDIIDRFKQFLWRPRPPSLLSEEKQKKIKKNL 610 (698)
T ss_pred cccceEEEEeecHHHHHHHHHHHHhhccCCCCCcccCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999973 4444444
No 4
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=100.00 E-value=1.2e-40 Score=292.69 Aligned_cols=194 Identities=47% Similarity=0.911 Sum_probs=184.8
Q ss_pred eeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEcc
Q 013871 137 RSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGF 216 (434)
Q Consensus 137 ~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~ 216 (434)
+++++++.+.|.|+++|++||+.++++.|+++++|||+..||.++..+.....+.+..+++|++++|+|+|++||+++|.
T Consensus 1 k~~f~~~~~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~ 80 (194)
T PF08662_consen 1 KNFFNVDDAKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGS 80 (194)
T ss_pred CCccccceEEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEcc
Confidence 35788899999999999999999999999999999999999999888877788888888899999999999999999999
Q ss_pred CCCeEEEEecccceeEEeCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceEEEECCCCCEEEE
Q 013871 217 MPASATIFNKKCRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMT 296 (434)
Q Consensus 217 ~~~~v~l~d~~~~~~~~~~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~~~wspdg~~l~t 296 (434)
+++++.|||+++..+.+++...+|+|.|||+|++|+++|++++.|.|.|||+++.+.+...++..++.++|||||++|++
T Consensus 81 ~~~~v~lyd~~~~~i~~~~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~~t~~~WsPdGr~~~t 160 (194)
T PF08662_consen 81 MPAKVTLYDVKGKKIFSFGTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHSDATDVEWSPDGRYLAT 160 (194)
T ss_pred CCcccEEEcCcccEeEeecCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccCcEEEEEEcCCCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999889889999999999999
Q ss_pred EEcCCceeeCCcEEEEeecCceeeeeecccceee
Q 013871 297 ATTAPRLQIDNGIKIFHHNGSLFFKKMFDKLFQA 330 (434)
Q Consensus 297 as~~prl~~D~~i~iw~~~g~~~~~~~~~~~~~~ 330 (434)
++++||+++||+++||+++|+++++..+++|+++
T Consensus 161 a~t~~r~~~dng~~Iw~~~G~~l~~~~~~~l~~~ 194 (194)
T PF08662_consen 161 ATTSPRLRVDNGFKIWSFQGRLLYKKPFDELYQV 194 (194)
T ss_pred EEeccceeccccEEEEEecCeEeEecchhhhhCC
Confidence 9999999999999999999999999999999875
No 5
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.9e-39 Score=290.65 Aligned_cols=310 Identities=17% Similarity=0.262 Sum_probs=241.5
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCC
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDF 80 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~ 80 (434)
|.|++|||+|++|+|.+ .|.++++||+.+..++.++..+. .-|.|++|||||+.||++ .+|+|++||....
T Consensus 118 Vl~~~fsp~g~~l~tGs-----GD~TvR~WD~~TeTp~~t~KgH~---~WVlcvawsPDgk~iASG~~dg~I~lwdpktg 189 (480)
T KOG0271|consen 118 VLSVQFSPTGSRLVTGS-----GDTTVRLWDLDTETPLFTCKGHK---NWVLCVAWSPDGKKIASGSKDGSIRLWDPKTG 189 (480)
T ss_pred EEEEEecCCCceEEecC-----CCceEEeeccCCCCcceeecCCc---cEEEEEEECCCcchhhccccCCeEEEecCCCC
Confidence 77999999999999988 89999999999999988887754 677899999999999999 5789999998765
Q ss_pred CC-ceeeeeecCCeeEEEEeCCC----CCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCe
Q 013871 81 PK-GILYRLRVPGVAAFEVSKAP----GSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTG 155 (434)
Q Consensus 81 ~~-~~~~~~~~~~v~~~~~sp~~----~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~ 155 (434)
+. +...+.|...|.+++|.|-. ...+| +.+.++.|+||++.. +..+...+.|...+.+++|.-+|
T Consensus 190 ~~~g~~l~gH~K~It~Lawep~hl~p~~r~la-----s~skDg~vrIWd~~~---~~~~~~lsgHT~~VTCvrwGG~g-- 259 (480)
T KOG0271|consen 190 QQIGRALRGHKKWITALAWEPLHLVPPCRRLA-----SSSKDGSVRIWDTKL---GTCVRTLSGHTASVTCVRWGGEG-- 259 (480)
T ss_pred CcccccccCcccceeEEeecccccCCCcccee-----cccCCCCEEEEEccC---ceEEEEeccCccceEEEEEcCCc--
Confidence 43 34566778889999999863 12333 457789999999987 88999999999999999998665
Q ss_pred EEEEEEecccccCceeecceeEEEEeeCCcceee---eecCCCCCeEEEEECcCCCE-----------------------
Q 013871 156 LLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGL---VPLRKEGPVHDVQWSYSGSE----------------------- 209 (434)
Q Consensus 156 l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~---v~l~~~~~i~~v~wspdg~~----------------------- 209 (434)
+ +.+...|.+++.|....+... ....++... +.+..+.....-+|.|.+++
T Consensus 260 l--iySgS~DrtIkvw~a~dG~~~-r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~ 336 (480)
T KOG0271|consen 260 L--IYSGSQDRTIKVWRALDGKLC-RELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSG 336 (480)
T ss_pred e--EEecCCCceEEEEEccchhHH-HhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCc
Confidence 3 345557888887754332111 111222111 11111222222334455544
Q ss_pred --EEEEEccCCCeEEEEecc--cceeEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--C
Q 013871 210 --FAVVYGFMPASATIFNKK--CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--C 281 (434)
Q Consensus 210 --~av~~g~~~~~v~l~d~~--~~~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~ 281 (434)
++ +|+.|.++.+|+-. .+++..+ |..-+|.+.|||||++||+|+||+ .|++||.++|+.+..+.+| .
T Consensus 337 erlV--SgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDk---SVkLW~g~tGk~lasfRGHv~~ 411 (480)
T KOG0271|consen 337 ERLV--SGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDK---SVKLWDGRTGKFLASFRGHVAA 411 (480)
T ss_pred ceeE--EecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeeccc---ceeeeeCCCcchhhhhhhccce
Confidence 44 79999999999863 3344444 788899999999999999999887 9999999999999999988 5
Q ss_pred ceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceeeee---ecccceeeEEEcCCCCCCCCc
Q 013871 282 SVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKK---MFDKLFQAEWKPVSPDKFGDI 343 (434)
Q Consensus 282 ~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~~~~~---~~~~~~~~~w~p~~~~~~~~~ 343 (434)
+..++||.|.|.|++++. |.++++|++..+.+... +.+|+|.+.|+|++..+.+.+
T Consensus 412 VYqvawsaDsRLlVS~Sk------DsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sgg 470 (480)
T KOG0271|consen 412 VYQVAWSADSRLLVSGSK------DSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGG 470 (480)
T ss_pred eEEEEeccCccEEEEcCC------CceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCC
Confidence 556999999999999999 99999999988766553 568999999999998887764
No 6
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=5.9e-33 Score=253.08 Aligned_cols=271 Identities=13% Similarity=0.178 Sum_probs=227.0
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCC--CcEEEEe-cCCeEEEEeCC
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSD--EAVACRM-ATNEIQFFDTT 78 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d--~~~la~~-~~~~i~v~~~~ 78 (434)
|..+.||+|++.|+|++ .++.++||++.++..+..|.++. ..+.++.|.|. +..+|++ .|+++++|+++
T Consensus 178 is~~~fS~ds~~laT~s-----wsG~~kvW~~~~~~~~~~l~gH~---~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~ 249 (459)
T KOG0272|consen 178 ISGCSFSRDSKHLATGS-----WSGLVKVWSVPQCNLLQTLRGHT---SRVGAAVFHPVDSDLNLATASADGTVKLWKLS 249 (459)
T ss_pred ceeeEeecCCCeEEEee-----cCCceeEeecCCcceeEEEeccc---cceeeEEEccCCCccceeeeccCCceeeeccC
Confidence 56789999999999999 99999999999999999998865 56669999996 5577777 58999999998
Q ss_pred CCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEE
Q 013871 79 DFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLA 158 (434)
Q Consensus 79 ~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~ 158 (434)
+.........|...|..++|+|+ +.+++. ...+.+-++||+.+ +..+....+|...+..+.|++||..+
T Consensus 250 ~e~~l~~l~gH~~RVs~VafHPs-G~~L~T-----asfD~tWRlWD~~t---k~ElL~QEGHs~~v~~iaf~~DGSL~-- 318 (459)
T KOG0272|consen 250 QETPLQDLEGHLARVSRVAFHPS-GKFLGT-----ASFDSTWRLWDLET---KSELLLQEGHSKGVFSIAFQPDGSLA-- 318 (459)
T ss_pred CCcchhhhhcchhhheeeeecCC-Cceeee-----cccccchhhccccc---chhhHhhcccccccceeEecCCCcee--
Confidence 86655667778889999999999 566653 34566889999998 88888889999999999999999963
Q ss_pred EEEecccccCceeecceeEEEEeeCCcceeeeec-CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccc-eeEEe--
Q 013871 159 VAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL-RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PILEL-- 234 (434)
Q Consensus 159 ~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l-~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~-~~~~~-- 234 (434)
++...|..++.|+-.+ + .+++-| .+..+|++|+|||+|.++| +|+.|++++|||++.. .++.+
T Consensus 319 -~tGGlD~~~RvWDlRt---------g-r~im~L~gH~k~I~~V~fsPNGy~lA--Tgs~Dnt~kVWDLR~r~~ly~ipA 385 (459)
T KOG0272|consen 319 -ATGGLDSLGRVWDLRT---------G-RCIMFLAGHIKEILSVAFSPNGYHLA--TGSSDNTCKVWDLRMRSELYTIPA 385 (459)
T ss_pred -eccCccchhheeeccc---------C-cEEEEecccccceeeEeECCCceEEe--ecCCCCcEEEeeecccccceeccc
Confidence 4455788887554222 2 233333 2578999999999999998 7999999999999743 35555
Q ss_pred CCcCeeEEEECC-CCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEE
Q 013871 235 GSGPYNTVRWNP-KGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKI 311 (434)
Q Consensus 235 ~~~~~~~i~~SP-~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~i 311 (434)
|..-|..+.|+| .|.+|+++++|+ +++||...++.++..+.+| .+.+++.||||++|+|++. |++||+
T Consensus 386 H~nlVS~Vk~~p~~g~fL~TasyD~---t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~------DRT~KL 456 (459)
T KOG0272|consen 386 HSNLVSQVKYSPQEGYFLVTASYDN---TVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSF------DRTIKL 456 (459)
T ss_pred ccchhhheEecccCCeEEEEcccCc---ceeeecCCCcccchhhcCCccceEEEEeccCCceEEEecc------Cceeee
Confidence 788899999999 778999999776 9999999999999999998 6777999999999999999 999999
Q ss_pred Ee
Q 013871 312 FH 313 (434)
Q Consensus 312 w~ 313 (434)
|.
T Consensus 457 W~ 458 (459)
T KOG0272|consen 457 WR 458 (459)
T ss_pred cc
Confidence 95
No 7
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1e-29 Score=229.26 Aligned_cols=279 Identities=13% Similarity=0.171 Sum_probs=210.0
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEE-EEeecCcCCCCCCeeeecC-----CCcEEEEec-CCeEEE
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVY-QLFQKNMTKTTWPSIRFSS-----DEAVACRMA-TNEIQF 74 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~-~~~~~~~~~~~~~~~~~S~-----d~~~la~~~-~~~i~v 74 (434)
|.|++|||||+.||+.+ .|+.|++||.++|+++. .+.+ |+..+.+++|-| ..++||+++ ||.|+|
T Consensus 160 VlcvawsPDgk~iASG~-----~dg~I~lwdpktg~~~g~~l~g---H~K~It~Lawep~hl~p~~r~las~skDg~vrI 231 (480)
T KOG0271|consen 160 VLCVAWSPDGKKIASGS-----KDGSIRLWDPKTGQQIGRALRG---HKKWITALAWEPLHLVPPCRRLASSSKDGSVRI 231 (480)
T ss_pred EEEEEECCCcchhhccc-----cCCeEEEecCCCCCcccccccC---cccceeEEeecccccCCCccceecccCCCCEEE
Confidence 78999999999999988 89999999999998765 4444 447777899965 678888884 789999
Q ss_pred EeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCC
Q 013871 75 FDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGST 154 (434)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~ 154 (434)
||+...........|...|+++.|--+ .+|. ++..+.+|++|+... +..+..+..|..-+..+..|-+
T Consensus 232 Wd~~~~~~~~~lsgHT~~VTCvrwGG~--gliy-----SgS~DrtIkvw~a~d---G~~~r~lkGHahwvN~lalsTd-- 299 (480)
T KOG0271|consen 232 WDTKLGTCVRTLSGHTASVTCVRWGGE--GLIY-----SGSQDRTIKVWRALD---GKLCRELKGHAHWVNHLALSTD-- 299 (480)
T ss_pred EEccCceEEEEeccCccceEEEEEcCC--ceEE-----ecCCCceEEEEEccc---hhHHHhhcccchheeeeeccch--
Confidence 999876555556677788999999754 2332 457789999999977 6777778888777777766632
Q ss_pred eEEEEEEecccccCce----------------------------eecceeEEEEeeCCcceeee-ecCCCCCeEEEEECc
Q 013871 155 GLLAVAQSDVDKTNQS----------------------------YYGESKLNYLTTDGTHEGLV-PLRKEGPVHDVQWSY 205 (434)
Q Consensus 155 ~l~~~~~~~~d~~~~~----------------------------~~g~~~l~~l~~~~~~~~~v-~l~~~~~i~~v~wsp 205 (434)
+++ -....|.++.. -....+|++++-...+.... ...+...|+.+.|||
T Consensus 300 y~L--Rtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSP 377 (480)
T KOG0271|consen 300 YVL--RTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSP 377 (480)
T ss_pred hhh--hccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECC
Confidence 110 00011111111 01122355554332221111 123467899999999
Q ss_pred CCCEEEEEEccCCCeEEEEeccc-ceeEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--
Q 013871 206 SGSEFAVVYGFMPASATIFNKKC-RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-- 280 (434)
Q Consensus 206 dg~~~av~~g~~~~~v~l~d~~~-~~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-- 280 (434)
|++++| +++.|..|++||.+. +.+.+| |-+++..++||.|.++|++++.| .++++||+++.++...+.+|
T Consensus 378 d~r~IA--SaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkD---sTLKvw~V~tkKl~~DLpGh~D 452 (480)
T KOG0271|consen 378 DGRYIA--SASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKD---STLKVWDVRTKKLKQDLPGHAD 452 (480)
T ss_pred CccEEE--EeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCC---ceEEEEEeeeeeecccCCCCCc
Confidence 999999 688899999999974 445566 78999999999999999999944 59999999999999999877
Q ss_pred CceEEEECCCCCEEEEEEcCCceeeCCcEEEEe
Q 013871 281 CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFH 313 (434)
Q Consensus 281 ~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~ 313 (434)
.+..+.|||||..+++++. |..++||.
T Consensus 453 EVf~vDwspDG~rV~sggk------dkv~~lw~ 479 (480)
T KOG0271|consen 453 EVFAVDWSPDGQRVASGGK------DKVLRLWR 479 (480)
T ss_pred eEEEEEecCCCceeecCCC------ceEEEeec
Confidence 5666999999999999999 99999996
No 8
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.97 E-value=3.7e-28 Score=212.35 Aligned_cols=270 Identities=13% Similarity=0.141 Sum_probs=214.0
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCC
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDF 80 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~ 80 (434)
|.++.|++|.++|++.+ .|+.|.|||.-|...++.++... .-|..++|+|.|+++|++ .||...||++...
T Consensus 58 i~~~~ws~Dsr~ivSaS-----qDGklIvWDs~TtnK~haipl~s---~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~ 129 (343)
T KOG0286|consen 58 IYAMDWSTDSRRIVSAS-----QDGKLIVWDSFTTNKVHAIPLPS---SWVMTCAYSPSGNFVACGGLDNKCSIYPLSTR 129 (343)
T ss_pred eeeeEecCCcCeEEeec-----cCCeEEEEEcccccceeEEecCc---eeEEEEEECCCCCeEEecCcCceeEEEecccc
Confidence 78999999999999999 99999999999999888888764 556678999999999998 4889999999754
Q ss_pred CCc---e-e--eeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECC-CC
Q 013871 81 PKG---I-L--YRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNR-GS 153 (434)
Q Consensus 81 ~~~---~-~--~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~-~G 153 (434)
+.. . . ...|..-+.++.|-++ +.+|. +..+.++-+|++++ ++.+.....|..++..+..+| ++
T Consensus 130 d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT------~SGD~TCalWDie~---g~~~~~f~GH~gDV~slsl~p~~~ 199 (343)
T KOG0286|consen 130 DAEGNVRVSRELAGHTGYLSCCRFLDD-NHILT------GSGDMTCALWDIET---GQQTQVFHGHTGDVMSLSLSPSDG 199 (343)
T ss_pred cccccceeeeeecCccceeEEEEEcCC-CceEe------cCCCceEEEEEccc---ceEEEEecCCcccEEEEecCCCCC
Confidence 211 1 1 1223344666677664 33332 35567999999999 899999999999999999999 77
Q ss_pred CeEEEEEEecccccCceeecceeEEEEeeCCcceeeeec-CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccc-ee
Q 013871 154 TGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL-RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PI 231 (434)
Q Consensus 154 ~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l-~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~-~~ 231 (434)
+.. .+...|++-+. |.+ ... .+...+ .++..|+++.|.|+|..|+ +|+.|+..++||++.. ++
T Consensus 200 ntF---vSg~cD~~akl-------WD~--R~~-~c~qtF~ghesDINsv~ffP~G~afa--tGSDD~tcRlyDlRaD~~~ 264 (343)
T KOG0286|consen 200 NTF---VSGGCDKSAKL-------WDV--RSG-QCVQTFEGHESDINSVRFFPSGDAFA--TGSDDATCRLYDLRADQEL 264 (343)
T ss_pred CeE---Eecccccceee-------eec--cCc-ceeEeecccccccceEEEccCCCeee--ecCCCceeEEEeecCCcEE
Confidence 763 33445666553 333 222 233333 3588999999999998888 8999999999999853 34
Q ss_pred EEe----CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceee
Q 013871 232 LEL----GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQI 305 (434)
Q Consensus 232 ~~~----~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~prl~~ 305 (434)
..+ ...++++++||-.|++|..|. .+.++.+||.-.++.+..+.+| .++++..+|||-.++|++-
T Consensus 265 a~ys~~~~~~gitSv~FS~SGRlLfagy---~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSW------ 335 (343)
T KOG0286|consen 265 AVYSHDSIICGITSVAFSKSGRLLFAGY---DDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSW------ 335 (343)
T ss_pred eeeccCcccCCceeEEEcccccEEEeee---cCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecch------
Confidence 444 357889999999999999886 4579999999999999999888 6777999999999999999
Q ss_pred CCcEEEEe
Q 013871 306 DNGIKIFH 313 (434)
Q Consensus 306 D~~i~iw~ 313 (434)
|..+|||.
T Consensus 336 Ds~lriW~ 343 (343)
T KOG0286|consen 336 DSTLRIWA 343 (343)
T ss_pred hHheeecC
Confidence 99999994
No 9
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=6.7e-29 Score=226.69 Aligned_cols=262 Identities=18% Similarity=0.192 Sum_probs=215.1
Q ss_pred CCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCC-CCCeEEEEecCCCCCCceEEEEEcCC
Q 013871 50 TTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKA-PGSHVAVFVPESKGSPASVQIYACGK 127 (434)
Q Consensus 50 ~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~~ia~~~~~~~~~~~~v~i~~~~~ 127 (434)
..+..+.||.|++.||+++ +|.++||+.++.......+.|...|..+.|+|. .+..++ +...++.+++|++.+
T Consensus 176 rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~la-----t~s~Dgtvklw~~~~ 250 (459)
T KOG0272|consen 176 RPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLA-----TASADGTVKLWKLSQ 250 (459)
T ss_pred CcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCcccee-----eeccCCceeeeccCC
Confidence 4566789999999999995 789999999998777788889999999999998 355555 346778999999988
Q ss_pred CCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCC
Q 013871 128 DLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSG 207 (434)
Q Consensus 128 ~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg 207 (434)
..++..++.|...+..++|+|+|++|.. +..|.+.+.|+-++. .+....-.+..+|++++|.|||
T Consensus 251 ---e~~l~~l~gH~~RVs~VafHPsG~~L~T---asfD~tWRlWD~~tk---------~ElL~QEGHs~~v~~iaf~~DG 315 (459)
T KOG0272|consen 251 ---ETPLQDLEGHLARVSRVAFHPSGKFLGT---ASFDSTWRLWDLETK---------SELLLQEGHSKGVFSIAFQPDG 315 (459)
T ss_pred ---CcchhhhhcchhhheeeeecCCCceeee---cccccchhhcccccc---------hhhHhhcccccccceeEecCCC
Confidence 7899999999999999999999999643 447888775532221 1222333457899999999999
Q ss_pred CEEEEEEccCCCeEEEEecc-cceeEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--Cc
Q 013871 208 SEFAVVYGFMPASATIFNKK-CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CS 282 (434)
Q Consensus 208 ~~~av~~g~~~~~v~l~d~~-~~~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~ 282 (434)
..++ +|++|..-+|||++ +..+.-+ |..+|.++.|||+|-.||+|+.|| +++|||++..+.+.++.+| -+
T Consensus 316 SL~~--tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dn---t~kVWDLR~r~~ly~ipAH~nlV 390 (459)
T KOG0272|consen 316 SLAA--TGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDN---TCKVWDLRMRSELYTIPAHSNLV 390 (459)
T ss_pred ceee--ccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCC---cEEEeeecccccceecccccchh
Confidence 8888 89999999999997 4444444 889999999999999999999555 9999999999889999888 34
Q ss_pred eEEEECC-CCCEEEEEEcCCceeeCCcEEEEeecCc-eeee--eecccceeeEEEcCCCCCCCC
Q 013871 283 VTSEWSP-DGRYFMTATTAPRLQIDNGIKIFHHNGS-LFFK--KMFDKLFQAEWKPVSPDKFGD 342 (434)
Q Consensus 283 ~~~~wsp-dg~~l~tas~~prl~~D~~i~iw~~~g~-~~~~--~~~~~~~~~~w~p~~~~~~~~ 342 (434)
+.+.|+| .|.+|+|++. |++++||.-.+- ++.. .+-+.+..+...|+...+.+.
T Consensus 391 S~Vk~~p~~g~fL~Tasy------D~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~ 448 (459)
T KOG0272|consen 391 SQVKYSPQEGYFLVTASY------DNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATS 448 (459)
T ss_pred hheEecccCCeEEEEccc------CcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEe
Confidence 4599999 7899999999 999999998654 3333 366789999999998877765
No 10
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.96 E-value=8.9e-27 Score=199.48 Aligned_cols=269 Identities=13% Similarity=0.203 Sum_probs=205.0
Q ss_pred CcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCCCc--eeeee
Q 013871 11 GLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPKG--ILYRL 88 (434)
Q Consensus 11 g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~~--~~~~~ 88 (434)
.-+|+|.+ .|.+|++|.+.+|.|.+++++.. ..+..+..+||.++||.+....|++||+++.... .....
T Consensus 10 ~viLvsA~-----YDhTIRfWqa~tG~C~rTiqh~d---sqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~ 81 (311)
T KOG0315|consen 10 PVILVSAG-----YDHTIRFWQALTGICSRTIQHPD---SQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEG 81 (311)
T ss_pred ceEEEecc-----CcceeeeeehhcCeEEEEEecCc---cceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEec
Confidence 35888888 89999999999999999988754 6677999999999999999999999999875542 33445
Q ss_pred ecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeee-cccceeEEEECCCCCeEEEEEEeccccc
Q 013871 89 RVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSF-FRCSTVQLNWNRGSTGLLAVAQSDVDKT 167 (434)
Q Consensus 89 ~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~-~~~~~~~~~ws~~G~~l~~~~~~~~d~~ 167 (434)
+..+|..+.|.-++ .-+. +++.+++++||++.. +.+++.+ +.+.+.++..+|.-..|++ .|++
T Consensus 82 h~kNVtaVgF~~dg-rWMy-----TgseDgt~kIWdlR~-----~~~qR~~~~~spVn~vvlhpnQteLis-----~dqs 145 (311)
T KOG0315|consen 82 HTKNVTAVGFQCDG-RWMY-----TGSEDGTVKIWDLRS-----LSCQRNYQHNSPVNTVVLHPNQTELIS-----GDQS 145 (311)
T ss_pred cCCceEEEEEeecC-eEEE-----ecCCCceEEEEeccC-----cccchhccCCCCcceEEecCCcceEEe-----ecCC
Confidence 56789999888874 3222 468899999999965 3333333 4578888999998888766 3444
Q ss_pred CceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-------ceeEEe--CCcC
Q 013871 168 NQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-------RPILEL--GSGP 238 (434)
Q Consensus 168 ~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~-------~~~~~~--~~~~ 238 (434)
+.. .+|.+..+.- .+....+...+|.++...|||+.++. ...-|..++|++-+ .++..+ |.+.
T Consensus 146 g~i-----rvWDl~~~~c-~~~liPe~~~~i~sl~v~~dgsml~a--~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~ 217 (311)
T KOG0315|consen 146 GNI-----RVWDLGENSC-THELIPEDDTSIQSLTVMPDGSMLAA--ANNKGNCYVWRLLNHQTASELEPVHKFQAHNGH 217 (311)
T ss_pred CcE-----EEEEccCCcc-ccccCCCCCcceeeEEEcCCCcEEEE--ecCCccEEEEEccCCCccccceEhhheecccce
Confidence 432 2343322211 22222233578999999999999994 55678999999743 233334 7899
Q ss_pred eeEEEECCCCCeEEEEecCCCCCeEEEEEccCC-EEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec
Q 013871 239 YNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG-KQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN 315 (434)
Q Consensus 239 ~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~-~~i~~~~~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~ 315 (434)
+..+.+|||+++|++++.+ .+++||+.++. +.-..+++| .+..|+||.||+||+||+. |+.+++|++.
T Consensus 218 il~C~lSPd~k~lat~ssd---ktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTass------d~~~rlW~~~ 288 (311)
T KOG0315|consen 218 ILRCLLSPDVKYLATCSSD---KTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASS------DHTARLWDLS 288 (311)
T ss_pred EEEEEECCCCcEEEeecCC---ceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCC------CCceeecccc
Confidence 9999999999999999955 59999999988 666667777 7888999999999999999 9999999994
Q ss_pred -Cceee
Q 013871 316 -GSLFF 320 (434)
Q Consensus 316 -g~~~~ 320 (434)
|+.+.
T Consensus 289 ~~k~v~ 294 (311)
T KOG0315|consen 289 AGKEVR 294 (311)
T ss_pred cCceee
Confidence 55443
No 11
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.96 E-value=7e-27 Score=216.14 Aligned_cols=272 Identities=14% Similarity=0.262 Sum_probs=213.2
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCC
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDF 80 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~ 80 (434)
|++|+|+-+|++|||+. .|+.++||+ .+|..+.+|.+++ ..+.++.|+.+|.|++++ .|+++.+||....
T Consensus 238 VT~L~Wn~~G~~LatG~-----~~G~~riw~-~~G~l~~tl~~Hk---gPI~slKWnk~G~yilS~~vD~ttilwd~~~g 308 (524)
T KOG0273|consen 238 VTSLDWNNDGTLLATGS-----EDGEARIWN-KDGNLISTLGQHK---GPIFSLKWNKKGTYILSGGVDGTTILWDAHTG 308 (524)
T ss_pred cceEEecCCCCeEEEee-----cCcEEEEEe-cCchhhhhhhccC---CceEEEEEcCCCCEEEeccCCccEEEEeccCc
Confidence 78999999999999999 999999999 5677778876654 788899999999999998 6899999999775
Q ss_pred CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEE
Q 013871 81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVA 160 (434)
Q Consensus 81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~ 160 (434)
.......++...--++.|-.+ ..+++ .+.++.|.++.+.. ..|+.+...|...+..+.|+|.|..|+.
T Consensus 309 ~~~q~f~~~s~~~lDVdW~~~--~~F~t-----s~td~~i~V~kv~~---~~P~~t~~GH~g~V~alk~n~tg~LLaS-- 376 (524)
T KOG0273|consen 309 TVKQQFEFHSAPALDVDWQSN--DEFAT-----SSTDGCIHVCKVGE---DRPVKTFIGHHGEVNALKWNPTGSLLAS-- 376 (524)
T ss_pred eEEEeeeeccCCccceEEecC--ceEee-----cCCCceEEEEEecC---CCcceeeecccCceEEEEECCCCceEEE--
Confidence 544444555444345666554 22221 34567899999988 8999999999999999999999986543
Q ss_pred EecccccCceeecceeEEEEeeCCcceeeeec-CCCCCeEEEEECcCCCE-------EEEEEccCCCeEEEEec-cccee
Q 013871 161 QSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL-RKEGPVHDVQWSYSGSE-------FAVVYGFMPASATIFNK-KCRPI 231 (434)
Q Consensus 161 ~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l-~~~~~i~~v~wspdg~~-------~av~~g~~~~~v~l~d~-~~~~~ 231 (434)
...|.+.+.|.+.+. + +.-.+ .+...|+.+.|||+|.- +.+++...++.|++||. ++.++
T Consensus 377 -~SdD~TlkiWs~~~~-------~---~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i 445 (524)
T KOG0273|consen 377 -CSDDGTLKIWSMGQS-------N---SVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPI 445 (524)
T ss_pred -ecCCCeeEeeecCCC-------c---chhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCcee
Confidence 335566654432211 1 11111 13668999999998652 23335667899999999 47888
Q ss_pred EEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCc-eEEEECCCCCEEEEEEcCCceeeCCc
Q 013871 232 LEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECS-VTSEWSPDGRYFMTATTAPRLQIDNG 308 (434)
Q Consensus 232 ~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~-~~~~wspdg~~l~tas~~prl~~D~~ 308 (434)
+.| |..+|.+++|||+|+++|+|+ .+|-|.+|++++++.++...+.+. ..+.|+-+|.+|..+.. |+.
T Consensus 446 ~~f~kH~~pVysvafS~~g~ylAsGs---~dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn~~G~kl~~~~s------d~~ 516 (524)
T KOG0273|consen 446 HTLMKHQEPVYSVAFSPNGRYLASGS---LDGCVHIWSTKTGKLVKSYQGTGGIFELCWNAAGDKLGACAS------DGS 516 (524)
T ss_pred EeeccCCCceEEEEecCCCcEEEecC---CCCeeEeccccchheeEeecCCCeEEEEEEcCCCCEEEEEec------CCC
Confidence 888 899999999999999999998 557999999999999999988755 56999999999999888 999
Q ss_pred EEEEee
Q 013871 309 IKIFHH 314 (434)
Q Consensus 309 i~iw~~ 314 (434)
+++-|+
T Consensus 517 vcvldl 522 (524)
T KOG0273|consen 517 VCVLDL 522 (524)
T ss_pred ceEEEe
Confidence 998775
No 12
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.96 E-value=1e-25 Score=210.98 Aligned_cols=314 Identities=13% Similarity=0.150 Sum_probs=203.1
Q ss_pred CcceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCC
Q 013871 1 MLLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTD 79 (434)
Q Consensus 1 ~V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~ 79 (434)
+|.|+.|||||++++|.+ .|+.+.|||=.+|+.+..+.....|+..+-++.||||++.+++.+ |.+++|||+..
T Consensus 192 FV~~VRysPDG~~Fat~g-----sDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~ 266 (603)
T KOG0318|consen 192 FVNCVRYSPDGSRFATAG-----SDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVST 266 (603)
T ss_pred ceeeEEECCCCCeEEEec-----CCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeec
Confidence 589999999999999999 899999999999999999985555778888999999999999985 66999999855
Q ss_pred CCCcee-------------------------------------------eeeecCCeeEEEEeCCCCCeEEEEecCCCCC
Q 013871 80 FPKGIL-------------------------------------------YRLRVPGVAAFEVSKAPGSHVAVFVPESKGS 116 (434)
Q Consensus 80 ~~~~~~-------------------------------------------~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~ 116 (434)
...... ...|...|+.+..+|++ .+|. ++..
T Consensus 267 ~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~-~~i~-----Sgsy 340 (603)
T KOG0318|consen 267 NSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDG-KTIY-----SGSY 340 (603)
T ss_pred cceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCC-CEEE-----eecc
Confidence 322111 11123356666666664 2222 2456
Q ss_pred CceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEe----------cccccCceeecc------------
Q 013871 117 PASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQS----------DVDKTNQSYYGE------------ 174 (434)
Q Consensus 117 ~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~----------~~d~~~~~~~g~------------ 174 (434)
++.|.-|+....... . ..-..|...+..|.-+..|..+.+..+. ...+....-.|.
T Consensus 341 DG~I~~W~~~~g~~~-~-~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~ 418 (603)
T KOG0318|consen 341 DGHINSWDSGSGTSD-R-LAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGG 418 (603)
T ss_pred CceEEEEecCCcccc-c-cccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCC
Confidence 678888887652100 0 0001122222222222222211111000 000000000000
Q ss_pred -------eeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeE-----EeCCcCeeEE
Q 013871 175 -------SKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPIL-----ELGSGPYNTV 242 (434)
Q Consensus 175 -------~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~-----~~~~~~~~~i 242 (434)
..|.++.-. .....++......+++.+|+++++|| |..|+++.+|.+.+..+. .-|.++++++
T Consensus 419 ~avv~~~~~iv~l~~~---~~~~~~~~~y~~s~vAv~~~~~~vaV--GG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~v 493 (603)
T KOG0318|consen 419 TAVVACISDIVLLQDQ---TKVSSIPIGYESSAVAVSPDGSEVAV--GGQDGKVHVYSLSGDELKEEAKLLEHRAAITDV 493 (603)
T ss_pred EEEEEecCcEEEEecC---CcceeeccccccceEEEcCCCCEEEE--ecccceEEEEEecCCcccceeeeecccCCceEE
Confidence 011111110 11111112345568999999999996 888999999988754322 2389999999
Q ss_pred EECCCCCeEEEEecCCCCCeEEEEEccCCEEEE---EeeCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCce-
Q 013871 243 RWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLG---TTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL- 318 (434)
Q Consensus 243 ~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~---~~~~~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~- 318 (434)
+|||||.|||++. ..+.+.+||+.+++... .|....+.+++|||+..++|||+. |..|.||.+..-.
T Consensus 494 aySpd~~yla~~D---a~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSl------Dt~Viiysv~kP~~ 564 (603)
T KOG0318|consen 494 AYSPDGAYLAAGD---ASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSL------DTNVIIYSVKKPAK 564 (603)
T ss_pred EECCCCcEEEEec---cCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccc------cceEEEEEccChhh
Confidence 9999999999987 66899999999886532 223336778999999999999999 9999999996432
Q ss_pred ---eeeeecccceeeEEEcCCCCCCCC
Q 013871 319 ---FFKKMFDKLFQAEWKPVSPDKFGD 342 (434)
Q Consensus 319 ---~~~~~~~~~~~~~w~p~~~~~~~~ 342 (434)
+...|...+..+.|--.. .+.+.
T Consensus 565 ~i~iknAH~~gVn~v~wlde~-tvvSs 590 (603)
T KOG0318|consen 565 HIIIKNAHLGGVNSVAWLDES-TVVSS 590 (603)
T ss_pred heEeccccccCceeEEEecCc-eEEec
Confidence 222355669999998654 44443
No 13
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.95 E-value=8.6e-25 Score=212.47 Aligned_cols=308 Identities=14% Similarity=0.186 Sum_probs=209.1
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCC
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFP 81 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~ 81 (434)
|.+++.||+|++|+... +.+...+-++.....++.|..+ ..+-+++|||||+++|.+..+-++||..+...
T Consensus 58 I~~ialSp~g~lllavd-----E~g~~~lvs~~~r~Vlh~f~fk----~~v~~i~fSPng~~fav~~gn~lqiw~~P~~~ 128 (893)
T KOG0291|consen 58 ITRIALSPDGTLLLAVD-----ERGRALLVSLLSRSVLHRFNFK----RGVGAIKFSPNGKFFAVGCGNLLQIWHAPGEI 128 (893)
T ss_pred eEEEEeCCCceEEEEEc-----CCCcEEEEecccceeeEEEeec----CccceEEECCCCcEEEEEecceeEEEecCcch
Confidence 67899999999999988 7888888898888888888776 66779999999999999999999999987643
Q ss_pred C--------ceeeeeecCCeeEEEEeCCCCC--------------------------------eEEEEec-CC-----CC
Q 013871 82 K--------GILYRLRVPGVAAFEVSKAPGS--------------------------------HVAVFVP-ES-----KG 115 (434)
Q Consensus 82 ~--------~~~~~~~~~~v~~~~~sp~~~~--------------------------------~ia~~~~-~~-----~~ 115 (434)
. ......+...|.++.||.|... .+++|.. ++ -+
T Consensus 129 ~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvs 208 (893)
T KOG0291|consen 129 KNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVS 208 (893)
T ss_pred hcccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEe
Confidence 2 1122345678999999987321 1111110 00 12
Q ss_pred CCceEEEEEcCCCC--------------------C---------------------------------------------
Q 013871 116 SPASVQIYACGKDL--------------------Q--------------------------------------------- 130 (434)
Q Consensus 116 ~~~~v~i~~~~~~~--------------------~--------------------------------------------- 130 (434)
.+|.+.+|.+...- .
T Consensus 209 kdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~ 288 (893)
T KOG0291|consen 209 KDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGE 288 (893)
T ss_pred cCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCe
Confidence 34566666655100 0
Q ss_pred --------CCceeeeeecccceeEEEECCCCCeEEEEEEecccccCc--eeecceeEEEEeeCCcceeeeecCCCCCeEE
Q 013871 131 --------SQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQ--SYYGESKLNYLTTDGTHEGLVPLRKEGPVHD 200 (434)
Q Consensus 131 --------~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~--~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~ 200 (434)
...+.+.+.....+..+.||..|.+|++.++ +.++ .|.-....|.+... .|...+.+
T Consensus 289 f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~----klgQLlVweWqsEsYVlKQQ---------gH~~~i~~ 355 (893)
T KOG0291|consen 289 FGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCS----KLGQLLVWEWQSESYVLKQQ---------GHSDRITS 355 (893)
T ss_pred eEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCC----ccceEEEEEeeccceeeecc---------ccccceee
Confidence 1111111222233445667777777766421 2222 11111122222221 23568999
Q ss_pred EEECcCCCEEEEEEccCCCeEEEEecc-cceeEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccC-------
Q 013871 201 VQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD------- 270 (434)
Q Consensus 201 v~wspdg~~~av~~g~~~~~v~l~d~~-~~~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~------- 270 (434)
+++||||..++ +|..|++|++||.. +-++.+| |+..++.+.|+..|+.|++++ +||+|+.||+..
T Consensus 356 l~YSpDgq~ia--TG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssS---LDGtVRAwDlkRYrNfRTf 430 (893)
T KOG0291|consen 356 LAYSPDGQLIA--TGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSS---LDGTVRAWDLKRYRNFRTF 430 (893)
T ss_pred EEECCCCcEEE--eccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEee---cCCeEEeeeecccceeeee
Confidence 99999999998 79999999999985 3444455 788888888888888888777 667777777764
Q ss_pred -------------------------------------CEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEE
Q 013871 271 -------------------------------------GKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKI 311 (434)
Q Consensus 271 -------------------------------------~~~i~~~~~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~i 311 (434)
|+++-.+.+| .+..++|+|+|..|++++- |++|||
T Consensus 431 t~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SW------DkTVRi 504 (893)
T KOG0291|consen 431 TSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSW------DKTVRI 504 (893)
T ss_pred cCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccc------cceEEE
Confidence 3333344455 3445899999999999999 999999
Q ss_pred EeecCc--eeeee-ecccceeeEEEcCCCCCCCC
Q 013871 312 FHHNGS--LFFKK-MFDKLFQAEWKPVSPDKFGD 342 (434)
Q Consensus 312 w~~~g~--~~~~~-~~~~~~~~~w~p~~~~~~~~ 342 (434)
|++-+. .+... ...++..+.++|++..+..+
T Consensus 505 W~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVa 538 (893)
T KOG0291|consen 505 WDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVA 538 (893)
T ss_pred EEeeccCceeeeEeeccceeEEEEcCCCCeEEEE
Confidence 999554 33333 34579999999999887664
No 14
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.95 E-value=1.1e-24 Score=202.09 Aligned_cols=272 Identities=16% Similarity=0.221 Sum_probs=204.8
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF 80 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~ 80 (434)
|.+++|+|+|++|++.+ .|+.|.+|++.+++.+..+..+. ..+..+.|++++++++++. ++.|++|+....
T Consensus 12 i~~~~~~~~~~~l~~~~-----~~g~i~i~~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~ 83 (289)
T cd00200 12 VTCVAFSPDGKLLATGS-----GDGTIKVWDLETGELLRTLKGHT---GPVRDVAASADGTYLASGSSDKTIRLWDLETG 83 (289)
T ss_pred EEEEEEcCCCCEEEEee-----cCcEEEEEEeeCCCcEEEEecCC---cceeEEEECCCCCEEEEEcCCCeEEEEEcCcc
Confidence 78999999999999988 78999999999888767665543 4455899999998888875 789999999875
Q ss_pred CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEE
Q 013871 81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVA 160 (434)
Q Consensus 81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~ 160 (434)
........+...+.++.|+|+ +..++.- +..+.+.+|++.+ .+.+.....+...+..+.|+|++..++...
T Consensus 84 ~~~~~~~~~~~~i~~~~~~~~-~~~~~~~-----~~~~~i~~~~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 154 (289)
T cd00200 84 ECVRTLTGHTSYVSSVAFSPD-GRILSSS-----SRDKTIKVWDVET---GKCLTTLRGHTDWVNSVAFSPDGTFVASSS 154 (289)
T ss_pred cceEEEeccCCcEEEEEEcCC-CCEEEEe-----cCCCeEEEEECCC---cEEEEEeccCCCcEEEEEEcCcCCEEEEEc
Confidence 443334444557999999998 4444431 2467899999986 566666666677788999999977655431
Q ss_pred EecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-ceeEEe--CCc
Q 013871 161 QSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL--GSG 237 (434)
Q Consensus 161 ~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~-~~~~~~--~~~ 237 (434)
.|.. ++.++............+...+.++.|+|+++.+++ +..++.+.+||++. ..+..+ +..
T Consensus 155 ---~~~~---------i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~--~~~~~~i~i~d~~~~~~~~~~~~~~~ 220 (289)
T cd00200 155 ---QDGT---------IKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLS--SSSDGTIKLWDLSTGKCLGTLRGHEN 220 (289)
T ss_pred ---CCCc---------EEEEEccccccceeEecCccccceEEECCCcCEEEE--ecCCCcEEEEECCCCceecchhhcCC
Confidence 1222 333333322111111133568999999999988885 44488999999974 444444 566
Q ss_pred CeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEe
Q 013871 238 PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFH 313 (434)
Q Consensus 238 ~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~ 313 (434)
.+.++.|+|++.++++++ .+|.|++||+.+++.+..+..+ .+..++|+|+|.+|++++. |+.++||+
T Consensus 221 ~i~~~~~~~~~~~~~~~~---~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------d~~i~iw~ 289 (289)
T cd00200 221 GVNSVAFSPDGYLLASGS---EDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSA------DGTIRIWD 289 (289)
T ss_pred ceEEEEEcCCCcEEEEEc---CCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecC------CCeEEecC
Confidence 899999999988888776 4679999999988888777765 4667999999999999999 99999996
No 15
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.95 E-value=1e-24 Score=189.77 Aligned_cols=274 Identities=17% Similarity=0.233 Sum_probs=202.8
Q ss_pred cceEEecCCC-cEEEEEecCCCCCCCcEEEEEc-----CCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEE
Q 013871 2 LLLLTCLRVG-LIIQTFQKSSTPQEKNVILWKT-----ETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQF 74 (434)
Q Consensus 2 V~~l~fSP~g-~~L~t~~~~~~~~d~~v~iWd~-----~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v 74 (434)
|..++..+.+ ..|++.+ .|+.+.+|++ +.|..++.|.+++ -.+..+.-++||+++.+++ |+++++
T Consensus 18 Vt~la~~~~~~~~l~sas-----rDk~ii~W~L~~dd~~~G~~~r~~~GHs---H~v~dv~~s~dg~~alS~swD~~lrl 89 (315)
T KOG0279|consen 18 VTALAIKIKNSDILVSAS-----RDKTIIVWKLTSDDIKYGVPVRRLTGHS---HFVSDVVLSSDGNFALSASWDGTLRL 89 (315)
T ss_pred EEEEEeecCCCceEEEcc-----cceEEEEEEeccCccccCceeeeeeccc---eEecceEEccCCceEEeccccceEEE
Confidence 6677777774 4555666 7899999987 4567788888865 3455778999999999985 789999
Q ss_pred EeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeec--ccceeEEEECCC
Q 013871 75 FDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFF--RCSTVQLNWNRG 152 (434)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~--~~~~~~~~ws~~ 152 (434)
||+...........|...|.++++||++ ..|. ++..+.++.+|++-. ....++.-. +.-+.+++|+|.
T Consensus 90 WDl~~g~~t~~f~GH~~dVlsva~s~dn-~qiv-----SGSrDkTiklwnt~g----~ck~t~~~~~~~~WVscvrfsP~ 159 (315)
T KOG0279|consen 90 WDLATGESTRRFVGHTKDVLSVAFSTDN-RQIV-----SGSRDKTIKLWNTLG----VCKYTIHEDSHREWVSCVRFSPN 159 (315)
T ss_pred EEecCCcEEEEEEecCCceEEEEecCCC-ceee-----cCCCcceeeeeeecc----cEEEEEecCCCcCcEEEEEEcCC
Confidence 9998875555566778889999999994 4443 356677999999864 333333222 556789999998
Q ss_pred CCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-ccee
Q 013871 153 STGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPI 231 (434)
Q Consensus 153 G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~-~~~~ 231 (434)
....+ +.+...|++.+.| .++ +..-...-+.+.+.++.+++||||...+ +|..++++.+||++ ++.+
T Consensus 160 ~~~p~-Ivs~s~DktvKvW-------nl~--~~~l~~~~~gh~~~v~t~~vSpDGslca--sGgkdg~~~LwdL~~~k~l 227 (315)
T KOG0279|consen 160 ESNPI-IVSASWDKTVKVW-------NLR--NCQLRTTFIGHSGYVNTVTVSPDGSLCA--SGGKDGEAMLWDLNEGKNL 227 (315)
T ss_pred CCCcE-EEEccCCceEEEE-------ccC--CcchhhccccccccEEEEEECCCCCEEe--cCCCCceEEEEEccCCcee
Confidence 63322 3445567777754 332 1111112234688999999999999888 79999999999995 5667
Q ss_pred EEe-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC-----------CCceEEEECCCCCEEEEEEc
Q 013871 232 LEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA-----------ECSVTSEWSPDGRYFMTATT 299 (434)
Q Consensus 232 ~~~-~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~-----------~~~~~~~wspdg~~l~tas~ 299 (434)
..+ +...|++++|+|+--+|+.+. +. .|+|||+++++++..+.- ...+.++||+||..|+.+-+
T Consensus 228 ysl~a~~~v~sl~fspnrywL~~at-~~---sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~t 303 (315)
T KOG0279|consen 228 YSLEAFDIVNSLCFSPNRYWLCAAT-AT---SIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYT 303 (315)
T ss_pred EeccCCCeEeeEEecCCceeEeecc-CC---ceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeec
Confidence 777 678999999999877777654 33 599999998876654431 12344999999999999999
Q ss_pred CCceeeCCcEEEEeec
Q 013871 300 APRLQIDNGIKIFHHN 315 (434)
Q Consensus 300 ~prl~~D~~i~iw~~~ 315 (434)
||.|++|.+.
T Consensus 304 ------d~~irv~qv~ 313 (315)
T KOG0279|consen 304 ------DNVIRVWQVA 313 (315)
T ss_pred ------CCcEEEEEee
Confidence 9999999864
No 16
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.95 E-value=2.9e-25 Score=205.44 Aligned_cols=300 Identities=14% Similarity=0.244 Sum_probs=220.4
Q ss_pred cceEEecCCCc-EEEEEecCCCCCCCcEEEEEcCC--CcE-----EEEEe---ec-CcCCCCCCeeeecCCCcEEEEe-c
Q 013871 2 LLLLTCLRVGL-IIQTFQKSSTPQEKNVILWKTET--GEA-----VYQLF---QK-NMTKTTWPSIRFSSDEAVACRM-A 68 (434)
Q Consensus 2 V~~l~fSP~g~-~L~t~~~~~~~~d~~v~iWd~~~--g~~-----~~~~~---~~-~~~~~~~~~~~~S~d~~~la~~-~ 68 (434)
|.+.+|+|--. .|++.+ .|-..++|++.. ..+ ++... .+ ......+++++|+.||.+||++ .
T Consensus 181 V~~~~WnP~~~~llasg~-----~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~ 255 (524)
T KOG0273|consen 181 VFICAWNPLRDGLLASGS-----GDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSE 255 (524)
T ss_pred eEEEecCchhhhhhhccC-----CccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeec
Confidence 55677888665 666655 788899999864 111 11110 11 1122678899999999999999 4
Q ss_pred CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEE
Q 013871 69 TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLN 148 (434)
Q Consensus 69 ~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ 148 (434)
+|++++|+.+... ......|-..|.++.|+-.+ .+|+ +.+.++++.||+.-. +....+.+++......+.
T Consensus 256 ~G~~riw~~~G~l-~~tl~~HkgPI~slKWnk~G-~yil-----S~~vD~ttilwd~~~---g~~~q~f~~~s~~~lDVd 325 (524)
T KOG0273|consen 256 DGEARIWNKDGNL-ISTLGQHKGPIFSLKWNKKG-TYIL-----SGGVDGTTILWDAHT---GTVKQQFEFHSAPALDVD 325 (524)
T ss_pred CcEEEEEecCchh-hhhhhccCCceEEEEEcCCC-CEEE-----eccCCccEEEEeccC---ceEEEeeeeccCCccceE
Confidence 7899999987633 24455666789999999984 4444 357889999999977 777888888888878899
Q ss_pred ECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-
Q 013871 149 WNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK- 227 (434)
Q Consensus 149 ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~- 227 (434)
|-.+.++... +.|... .+|.++..+ ....-..|.++|..+.|.|.|..|+ +++.|++++||+..
T Consensus 326 W~~~~~F~ts----~td~~i-------~V~kv~~~~--P~~t~~GH~g~V~alk~n~tg~LLa--S~SdD~TlkiWs~~~ 390 (524)
T KOG0273|consen 326 WQSNDEFATS----STDGCI-------HVCKVGEDR--PVKTFIGHHGEVNALKWNPTGSLLA--SCSDDGTLKIWSMGQ 390 (524)
T ss_pred EecCceEeec----CCCceE-------EEEEecCCC--cceeeecccCceEEEEECCCCceEE--EecCCCeeEeeecCC
Confidence 9887765322 222221 234443322 2222234689999999999999999 67788999999964
Q ss_pred cceeEEe--CCcCeeEEEECCCCC---------eEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEE
Q 013871 228 CRPILEL--GSGPYNTVRWNPKGK---------FLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYF 294 (434)
Q Consensus 228 ~~~~~~~--~~~~~~~i~~SP~g~---------~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l 294 (434)
....+.+ |...+.++.|||+|. .|+++++++ +|++||+..+.++..+..| .+..++|||+|+|+
T Consensus 391 ~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~ds---tV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~yl 467 (524)
T KOG0273|consen 391 SNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDS---TVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYL 467 (524)
T ss_pred CcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCC---eEEEEEccCCceeEeeccCCCceEEEEecCCCcEE
Confidence 5555665 678899999999653 688888665 9999999999999999665 66679999999999
Q ss_pred EEEEcCCceeeCCcEEEEeecCc-eeeeeec-ccceeeEEEcCCCCCC
Q 013871 295 MTATTAPRLQIDNGIKIFHHNGS-LFFKKMF-DKLFQAEWKPVSPDKF 340 (434)
Q Consensus 295 ~tas~~prl~~D~~i~iw~~~g~-~~~~~~~-~~~~~~~w~p~~~~~~ 340 (434)
++|+. |+.|.||+.... +++...- .-++.++|+-.+..+.
T Consensus 468 AsGs~------dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn~~G~kl~ 509 (524)
T KOG0273|consen 468 ASGSL------DGCVHIWSTKTGKLVKSYQGTGGIFELCWNAAGDKLG 509 (524)
T ss_pred EecCC------CCeeEeccccchheeEeecCCCeEEEEEEcCCCCEEE
Confidence 99999 999999999554 4444322 4589999999885443
No 17
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=4.6e-26 Score=207.52 Aligned_cols=272 Identities=15% Similarity=0.180 Sum_probs=191.1
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcE---EEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeC
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEA---VYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDT 77 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~---~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~ 77 (434)
|+.+.||++|+||||++ .|.+..||++..... .+++.++. ..|..+.||||++||++++ +..+.+||+
T Consensus 227 VWfl~FS~nGkyLAsaS-----kD~Taiiw~v~~d~~~kl~~tlvgh~---~~V~yi~wSPDdryLlaCg~~e~~~lwDv 298 (519)
T KOG0293|consen 227 VWFLQFSHNGKYLASAS-----KDSTAIIWIVVYDVHFKLKKTLVGHS---QPVSYIMWSPDDRYLLACGFDEVLSLWDV 298 (519)
T ss_pred EEEEEEcCCCeeEeecc-----CCceEEEEEEecCcceeeeeeeeccc---CceEEEEECCCCCeEEecCchHheeeccC
Confidence 78999999999999999 899999999865433 55666644 6777999999999998875 568999999
Q ss_pred CCCCCceeeee-ecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecc-cceeEEEECCCCCe
Q 013871 78 TDFPKGILYRL-RVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFR-CSTVQLNWNRGSTG 155 (434)
Q Consensus 78 ~~~~~~~~~~~-~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~-~~~~~~~ws~~G~~ 155 (434)
..........- +.-.+.+++|-||+-.+++ ++.+..+..|++.. ..+......+ ..+..++.++||++
T Consensus 299 ~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~------Gs~dr~i~~wdlDg----n~~~~W~gvr~~~v~dlait~Dgk~ 368 (519)
T KOG0293|consen 299 DTGDLRHLYPSGLGFSVSSCAWCPDGFRFVT------GSPDRTIIMWDLDG----NILGNWEGVRDPKVHDLAITYDGKY 368 (519)
T ss_pred CcchhhhhcccCcCCCcceeEEccCCceeEe------cCCCCcEEEecCCc----chhhcccccccceeEEEEEcCCCcE
Confidence 88654322221 2235889999999544332 45567899999864 2222222222 23568899999999
Q ss_pred EEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccce-eEEe
Q 013871 156 LLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP-ILEL 234 (434)
Q Consensus 156 l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~-~~~~ 234 (434)
++.++ .|+.+..| ..+.. ..+-.+..+.+|++++.|.||+++.+ .-.+..+.+||++... +..+
T Consensus 369 vl~v~---~d~~i~l~-------~~e~~---~dr~lise~~~its~~iS~d~k~~Lv--nL~~qei~LWDl~e~~lv~kY 433 (519)
T KOG0293|consen 369 VLLVT---VDKKIRLY-------NREAR---VDRGLISEEQPITSFSISKDGKLALV--NLQDQEIHLWDLEENKLVRKY 433 (519)
T ss_pred EEEEe---cccceeee-------chhhh---hhhccccccCceeEEEEcCCCcEEEE--EcccCeeEEeecchhhHHHHh
Confidence 88765 55555433 22111 11112233679999999999988875 5667899999997333 2222
Q ss_pred --CCcC--eeEEEECC-CCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCC-EEEEEEcCCceeeC
Q 013871 235 --GSGP--YNTVRWNP-KGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGR-YFMTATTAPRLQID 306 (434)
Q Consensus 235 --~~~~--~~~i~~SP-~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~-~l~tas~~prl~~D 306 (434)
|+.. +-.-+|-- +..++++|+ .|++|+||+..+++.+..+.+| .+.+++|+|... +||+|+. |
T Consensus 434 ~Ghkq~~fiIrSCFgg~~~~fiaSGS---ED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasD------D 504 (519)
T KOG0293|consen 434 FGHKQGHFIIRSCFGGGNDKFIASGS---EDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASD------D 504 (519)
T ss_pred hcccccceEEEeccCCCCcceEEecC---CCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCC------C
Confidence 2221 22223333 346888877 6789999999999999999998 556699999654 5778888 9
Q ss_pred CcEEEEeec
Q 013871 307 NGIKIFHHN 315 (434)
Q Consensus 307 ~~i~iw~~~ 315 (434)
|+||||...
T Consensus 505 gtIRIWg~~ 513 (519)
T KOG0293|consen 505 GTIRIWGPS 513 (519)
T ss_pred CeEEEecCC
Confidence 999999754
No 18
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.93 E-value=1.1e-23 Score=183.32 Aligned_cols=261 Identities=15% Similarity=0.171 Sum_probs=197.0
Q ss_pred CCCCCeeeecCCC-cEEEEe-cCCeEEEEeCCCCCCc-----eeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEE
Q 013871 49 KTTWPSIRFSSDE-AVACRM-ATNEIQFFDTTDFPKG-----ILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQ 121 (434)
Q Consensus 49 ~~~~~~~~~S~d~-~~la~~-~~~~i~v~~~~~~~~~-----~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~ 121 (434)
...+..++-.+.+ ..++.+ .|..|.+|++...+.. ...+.|...|..+.+++++...+. .+.++.++
T Consensus 15 ~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS------~swD~~lr 88 (315)
T KOG0279|consen 15 TDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALS------ASWDGTLR 88 (315)
T ss_pred CceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEe------ccccceEE
Confidence 3666677777764 455555 4669999998654321 123345557899999999654443 47788999
Q ss_pred EEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCC---CCCe
Q 013871 122 IYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK---EGPV 198 (434)
Q Consensus 122 i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~---~~~i 198 (434)
+||+.. ++...+...|..++.++++++|...|+ +...|++.+.|.. .+ ++..++.. .+-|
T Consensus 89 lWDl~~---g~~t~~f~GH~~dVlsva~s~dn~qiv---SGSrDkTiklwnt---------~g--~ck~t~~~~~~~~WV 151 (315)
T KOG0279|consen 89 LWDLAT---GESTRRFVGHTKDVLSVAFSTDNRQIV---SGSRDKTIKLWNT---------LG--VCKYTIHEDSHREWV 151 (315)
T ss_pred EEEecC---CcEEEEEEecCCceEEEEecCCCceee---cCCCcceeeeeee---------cc--cEEEEEecCCCcCcE
Confidence 999998 788899999999999999999999853 4557888775532 22 22222221 4689
Q ss_pred EEEEECcCCCEEEEEEccCCCeEEEEecccceeEE-e--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEE
Q 013871 199 HDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILE-L--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLG 275 (434)
Q Consensus 199 ~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~-~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~ 275 (434)
.++.|+|+.....+++++.|+.+++||+++.++.. + |.+.+|.+.+||||.++++|| .+|.+.+||++.++.+.
T Consensus 152 scvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGg---kdg~~~LwdL~~~k~ly 228 (315)
T KOG0279|consen 152 SCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGG---KDGEAMLWDLNEGKNLY 228 (315)
T ss_pred EEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCC---CCceEEEEEccCCceeE
Confidence 99999999877777789999999999998655443 3 788999999999999999988 67899999999999999
Q ss_pred EeeCCCceE-EEECCCCCEEEEEEcCCceeeCCcEEEEeecCc-eeeeeec-----------ccceeeEEEcCCCCCCCC
Q 013871 276 TTRAECSVT-SEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS-LFFKKMF-----------DKLFQAEWKPVSPDKFGD 342 (434)
Q Consensus 276 ~~~~~~~~~-~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~-~~~~~~~-----------~~~~~~~w~p~~~~~~~~ 342 (434)
.+.+..++. ++|+|.--.| .+.+ +.+|+||+...+ ++..... .....++|.+++..||..
T Consensus 229 sl~a~~~v~sl~fspnrywL-~~at------~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g 301 (315)
T KOG0279|consen 229 SLEAFDIVNSLCFSPNRYWL-CAAT------ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAG 301 (315)
T ss_pred eccCCCeEeeEEecCCceeE-eecc------CCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEee
Confidence 998876555 9999995444 4445 788999999655 3433322 245678899999999975
No 19
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.93 E-value=1.3e-24 Score=212.89 Aligned_cols=244 Identities=13% Similarity=0.176 Sum_probs=190.9
Q ss_pred EEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCC-----------C--------------------cee
Q 013871 38 AVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFP-----------K--------------------GIL 85 (434)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~-----------~--------------------~~~ 85 (434)
+.+++.... ..+.|..||+|+++||.+. +..|++|.+.... . ...
T Consensus 370 c~YT~~nt~---~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~ 446 (707)
T KOG0263|consen 370 CMYTFHNTY---QGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRT 446 (707)
T ss_pred EEEEEEEcC---CcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEE
Confidence 345554432 5677999999999999995 5699999975210 0 011
Q ss_pred eeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEeccc
Q 013871 86 YRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVD 165 (434)
Q Consensus 86 ~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d 165 (434)
...|...|.+..|+|+...++. ...+.+||+|.+.+ ...+.....|...+..+.|+|-|-+. ++...|
T Consensus 447 L~GH~GPVyg~sFsPd~rfLlS------cSED~svRLWsl~t---~s~~V~y~GH~~PVwdV~F~P~GyYF---atas~D 514 (707)
T KOG0263|consen 447 LYGHSGPVYGCSFSPDRRFLLS------CSEDSSVRLWSLDT---WSCLVIYKGHLAPVWDVQFAPRGYYF---ATASHD 514 (707)
T ss_pred eecCCCceeeeeecccccceee------ccCCcceeeeeccc---ceeEEEecCCCcceeeEEecCCceEE---EecCCC
Confidence 2234556899999998544443 36678999999998 67777778999999999999999774 444578
Q ss_pred ccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-cceeEEe--CCcCeeEE
Q 013871 166 KTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL--GSGPYNTV 242 (434)
Q Consensus 166 ~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~-~~~~~~~--~~~~~~~i 242 (434)
++-+.|.+.. ....++-..+-..|.++.|+|++.+++ +|+.|.++++||.. +..+.-| |++++.++
T Consensus 515 ~tArLWs~d~---------~~PlRifaghlsDV~cv~FHPNs~Y~a--TGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al 583 (707)
T KOG0263|consen 515 QTARLWSTDH---------NKPLRIFAGHLSDVDCVSFHPNSNYVA--TGSSDRTVRLWDVSTGNSVRIFTGHKGPVTAL 583 (707)
T ss_pred ceeeeeeccc---------CCchhhhcccccccceEEECCcccccc--cCCCCceEEEEEcCCCcEEEEecCCCCceEEE
Confidence 8877664432 223334444578899999999999999 79999999999985 5555555 89999999
Q ss_pred EECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecC
Q 013871 243 RWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG 316 (434)
Q Consensus 243 ~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g 316 (434)
+|||+|++|++|+ .+|.|.+||+.+++.+..+.+| .+.++.||.||..|++++. |++|++||+.-
T Consensus 584 ~~Sp~Gr~LaSg~---ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~------DnsV~lWD~~~ 650 (707)
T KOG0263|consen 584 AFSPCGRYLASGD---EDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGA------DNSVRLWDLTK 650 (707)
T ss_pred EEcCCCceEeecc---cCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCC------CCeEEEEEchh
Confidence 9999999999998 6789999999999999888877 4445999999999999999 99999999843
No 20
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.93 E-value=4.2e-23 Score=200.86 Aligned_cols=286 Identities=15% Similarity=0.181 Sum_probs=225.0
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC--CeEEEEeCCC
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT--NEIQFFDTTD 79 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~--~~i~v~~~~~ 79 (434)
|+|.+|+|.-+.||+.- ..+...++.+..-.+++.+.-.. ..+..+.|+.-|.++|.+.. +++.||+...
T Consensus 268 vtaa~fH~~t~~lvvgF-----ssG~f~LyelP~f~lih~LSis~---~~I~t~~~N~tGDWiA~g~~klgQLlVweWqs 339 (893)
T KOG0291|consen 268 VTAAAFHKGTNLLVVGF-----SSGEFGLYELPDFNLIHSLSISD---QKILTVSFNSTGDWIAFGCSKLGQLLVWEWQS 339 (893)
T ss_pred eeeeeccCCceEEEEEe-----cCCeeEEEecCCceEEEEeeccc---ceeeEEEecccCCEEEEcCCccceEEEEEeec
Confidence 67899999888998876 56788899999999999876643 56668999999999999976 5999999877
Q ss_pred CCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEE
Q 013871 80 FPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAV 159 (434)
Q Consensus 80 ~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~ 159 (434)
..-....+.|...+.+++.||| +..|+ +++.++.|+||+... +-++.+.+-|...++.+.|+..|+.++..
T Consensus 340 EsYVlKQQgH~~~i~~l~YSpD-gq~ia-----TG~eDgKVKvWn~~S---gfC~vTFteHts~Vt~v~f~~~g~~llss 410 (893)
T KOG0291|consen 340 ESYVLKQQGHSDRITSLAYSPD-GQLIA-----TGAEDGKVKVWNTQS---GFCFVTFTEHTSGVTAVQFTARGNVLLSS 410 (893)
T ss_pred cceeeeccccccceeeEEECCC-CcEEE-----eccCCCcEEEEeccC---ceEEEEeccCCCceEEEEEEecCCEEEEe
Confidence 5433344567889999999999 67777 467889999999987 77888888899999999999999876443
Q ss_pred EEecccccCceee--------------------------------c---ceeEEEEeeCCcceeeeecCCCCCeEEEEEC
Q 013871 160 AQSDVDKTNQSYY--------------------------------G---ESKLNYLTTDGTHEGLVPLRKEGPVHDVQWS 204 (434)
Q Consensus 160 ~~~~~d~~~~~~~--------------------------------g---~~~l~~l~~~~~~~~~v~l~~~~~i~~v~ws 204 (434)
..|.+.+.|. | ...|+.+++..++...+--.|++||..++|+
T Consensus 411 ---SLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~ 487 (893)
T KOG0291|consen 411 ---SLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFS 487 (893)
T ss_pred ---ecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEc
Confidence 2444444331 1 1234455555554445555679999999999
Q ss_pred cCCCEEEEEEccCCCeEEEEecc--cceeEEe-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC--
Q 013871 205 YSGSEFAVVYGFMPASATIFNKK--CRPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA-- 279 (434)
Q Consensus 205 pdg~~~av~~g~~~~~v~l~d~~--~~~~~~~-~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~-- 279 (434)
|+|..++ +++.|.+|++||+= ...+-.+ ....+..+.|+|+|+-||++. ++|+|.|||.+.+..+..+++
T Consensus 488 ~~~~~La--S~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaT---ldgqItf~d~~~~~q~~~Idgrk 562 (893)
T KOG0291|consen 488 PDGSLLA--SGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVAT---LDGQITFFDIKEAVQVGSIDGRK 562 (893)
T ss_pred cccCeEE--eccccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEE---ecceEEEEEhhhceeeccccchh
Confidence 9999888 79999999999983 2344444 467789999999999999999 888999999987665533321
Q ss_pred --------------------CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCce
Q 013871 280 --------------------ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL 318 (434)
Q Consensus 280 --------------------~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~ 318 (434)
...+.+++|+||.+|++|+. .+.|+|||+....
T Consensus 563 D~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~------sn~iCiY~v~~~v 615 (893)
T KOG0291|consen 563 DLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGE------SNSICIYDVPEGV 615 (893)
T ss_pred hccccccccceeehhhcccCCceEEEEEcCCCCEEEecCC------cccEEEEECchhh
Confidence 13456999999999999999 9999999995543
No 21
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.93 E-value=8.1e-23 Score=217.85 Aligned_cols=272 Identities=12% Similarity=0.145 Sum_probs=192.5
Q ss_pred CcceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCC----c----EEEEEeecCcCCCCCCeeeecC-CCcEEEEe-cCC
Q 013871 1 MLLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETG----E----AVYQLFQKNMTKTTWPSIRFSS-DEAVACRM-ATN 70 (434)
Q Consensus 1 ~V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g----~----~~~~~~~~~~~~~~~~~~~~S~-d~~~la~~-~~~ 70 (434)
.|.+++|||+|++|+|++ .|+.|+|||+.+. . .+..+... ..+.++.|++ ++.+|+++ .++
T Consensus 485 ~V~~i~fs~dg~~latgg-----~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~----~~v~~l~~~~~~~~~las~~~Dg 555 (793)
T PLN00181 485 LVCAIGFDRDGEFFATAG-----VNKKIKIFECESIIKDGRDIHYPVVELASR----SKLSGICWNSYIKSQVASSNFEG 555 (793)
T ss_pred cEEEEEECCCCCEEEEEe-----CCCEEEEEECCcccccccccccceEEeccc----CceeeEEeccCCCCEEEEEeCCC
Confidence 378999999999999999 8999999997532 1 12222221 4455889987 46788877 578
Q ss_pred eEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEEC
Q 013871 71 EIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWN 150 (434)
Q Consensus 71 ~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws 150 (434)
+|++||+...........|...|.+++|+|..+..++. ++.++.|++|++.. +..+..... ...++++.|+
T Consensus 556 ~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~S-----gs~Dg~v~iWd~~~---~~~~~~~~~-~~~v~~v~~~ 626 (793)
T PLN00181 556 VVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLAS-----GSDDGSVKLWSINQ---GVSIGTIKT-KANICCVQFP 626 (793)
T ss_pred eEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEE-----EcCCCEEEEEECCC---CcEEEEEec-CCCeEEEEEe
Confidence 99999998754333344566789999999854555553 46678999999987 566655543 3567788895
Q ss_pred -CCCCeEEEEEEecccccCceeecceeEEEEeeCCcceee-eecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc
Q 013871 151 -RGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGL-VPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC 228 (434)
Q Consensus 151 -~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~-v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~ 228 (434)
++|..+++.. .|.. ++.+++....... ....+...|..+.|. ++..|+ +++.|+.|++||++.
T Consensus 627 ~~~g~~latgs---~dg~---------I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lv--s~s~D~~ikiWd~~~ 691 (793)
T PLN00181 627 SESGRSLAFGS---ADHK---------VYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLV--SSSTDNTLKLWDLSM 691 (793)
T ss_pred CCCCCEEEEEe---CCCe---------EEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEE--EEECCCEEEEEeCCC
Confidence 4677655431 3333 3333332221111 122356799999997 677766 577899999999862
Q ss_pred -------ceeEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEe-------------eCC--CceE
Q 013871 229 -------RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTT-------------RAE--CSVT 284 (434)
Q Consensus 229 -------~~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~-------------~~~--~~~~ 284 (434)
..+..+ |...++++.|+|+|++|++|+ .+|.|.+|+......+..+ ..+ .+..
T Consensus 692 ~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs---~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~ 768 (793)
T PLN00181 692 SISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGS---ETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISS 768 (793)
T ss_pred CccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEe---CCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEE
Confidence 345555 577889999999999999999 5579999998755333221 111 3566
Q ss_pred EEECCCCCEEEEEEcCCceeeCCcEEEEee
Q 013871 285 SEWSPDGRYFMTATTAPRLQIDNGIKIFHH 314 (434)
Q Consensus 285 ~~wspdg~~l~tas~~prl~~D~~i~iw~~ 314 (434)
++|+|+|..|++|+. |+.|+||++
T Consensus 769 v~ws~~~~~lva~~~------dG~I~i~~~ 792 (793)
T PLN00181 769 VCWRGQSSTLVAANS------TGNIKILEM 792 (793)
T ss_pred EEEcCCCCeEEEecC------CCcEEEEec
Confidence 999999999999999 999999986
No 22
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.93 E-value=2e-23 Score=187.91 Aligned_cols=282 Identities=16% Similarity=0.160 Sum_probs=208.9
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCC
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDF 80 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~ 80 (434)
|.+++.+|+.++++|.+ .|..-.||++.+|+.+..+..++ +.|.++.||.||.|||++ .++.|+||+....
T Consensus 67 vFavsl~P~~~l~aTGG-----gDD~AflW~~~~ge~~~eltgHK---DSVt~~~FshdgtlLATGdmsG~v~v~~~stg 138 (399)
T KOG0296|consen 67 VFAVSLHPNNNLVATGG-----GDDLAFLWDISTGEFAGELTGHK---DSVTCCSFSHDGTLLATGDMSGKVLVFKVSTG 138 (399)
T ss_pred eEEEEeCCCCceEEecC-----CCceEEEEEccCCcceeEecCCC---CceEEEEEccCceEEEecCCCccEEEEEcccC
Confidence 67899999999999988 88999999999999888887754 888899999999999999 5799999999875
Q ss_pred CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEE
Q 013871 81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVA 160 (434)
Q Consensus 81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~ 160 (434)
............+.=+.|+|- ..+++. +..++.+..|++++ .........+..+..+=.+.|+|+.++...
T Consensus 139 ~~~~~~~~e~~dieWl~WHp~-a~illA-----G~~DGsvWmw~ip~---~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy 209 (399)
T KOG0296|consen 139 GEQWKLDQEVEDIEWLKWHPR-AHILLA-----GSTDGSVWMWQIPS---QALCKVMSGHNSPCTCGEFIPDGKRILTGY 209 (399)
T ss_pred ceEEEeecccCceEEEEeccc-ccEEEe-----ecCCCcEEEEECCC---cceeeEecCCCCCcccccccCCCceEEEEe
Confidence 432222225567888899996 555542 46678999999998 666677777888888888999999876643
Q ss_pred EecccccCceeecce--eEEEEe-------------------eCCccee-----------ee----------ecCCCCCe
Q 013871 161 QSDVDKTNQSYYGES--KLNYLT-------------------TDGTHEG-----------LV----------PLRKEGPV 198 (434)
Q Consensus 161 ~~~~d~~~~~~~g~~--~l~~l~-------------------~~~~~~~-----------~v----------~l~~~~~i 198 (434)
.|.+.+.|.-.+ .++.+. +.+..++ .+ ....+..+
T Consensus 210 ---~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~ 286 (399)
T KOG0296|consen 210 ---DDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELD 286 (399)
T ss_pred ---cCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhh
Confidence 355555552211 122221 0000000 00 00112223
Q ss_pred EEEEECcCC---CEEEEEEccCCCeEEEEeccccee-EEe-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEE
Q 013871 199 HDVQWSYSG---SEFAVVYGFMPASATIFNKKCRPI-LEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQ 273 (434)
Q Consensus 199 ~~v~wspdg---~~~av~~g~~~~~v~l~d~~~~~~-~~~-~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~ 273 (434)
.++.+.|.. ..+| .|++|++|.|||+....+ +.+ |..+|..+.|-+ ..+|+++. .+|+|+.||.++|.+
T Consensus 287 esve~~~~ss~lpL~A--~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c---~~g~v~~wDaRtG~l 360 (399)
T KOG0296|consen 287 ESVESIPSSSKLPLAA--CGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTAC---ANGKVRQWDARTGQL 360 (399)
T ss_pred hhhhhcccccccchhh--cccccceEEEEecccchhheeccCCCceEEEEEcC-cchheeec---cCceEEeeeccccce
Confidence 344444433 3344 599999999999965443 344 778899999999 77888887 778999999999999
Q ss_pred EEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec
Q 013871 274 LGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN 315 (434)
Q Consensus 274 i~~~~~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~ 315 (434)
+..+.+| .+..++.+|++++++|++. ||+.+||.+.
T Consensus 361 ~~~y~GH~~~Il~f~ls~~~~~vvT~s~------D~~a~VF~v~ 398 (399)
T KOG0296|consen 361 KFTYTGHQMGILDFALSPQKRLVVTVSD------DNTALVFEVP 398 (399)
T ss_pred EEEEecCchheeEEEEcCCCcEEEEecC------CCeEEEEecC
Confidence 9999998 6667999999999999999 9999999863
No 23
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.93 E-value=1.4e-23 Score=208.91 Aligned_cols=277 Identities=14% Similarity=0.154 Sum_probs=211.3
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCc--EEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCC
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGE--AVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTT 78 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~--~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~ 78 (434)
|.++.|||+|++|++.+ .|+.+++|++.+++ .++.+.+ |...+..++||||+++++++. |.+|+|||+.
T Consensus 162 v~~~~fs~~g~~l~~~~-----~~~~i~~~~~~~~~~~~~~~l~~---h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~ 233 (456)
T KOG0266|consen 162 VTCVDFSPDGRALAAAS-----SDGLIRIWKLEGIKSNLLRELSG---HTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLK 233 (456)
T ss_pred eEEEEEcCCCCeEEEcc-----CCCcEEEeecccccchhhccccc---cccceeeeEECCCCcEEEEecCCceEEEeecc
Confidence 57899999999999988 89999999997777 5555533 447888999999999999995 5699999994
Q ss_pred CC-CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEE
Q 013871 79 DF-PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLL 157 (434)
Q Consensus 79 ~~-~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~ 157 (434)
.. ........|...|.+++|+|.+ ..++ +++.++.|+||++.+ +..+..+..|...+..+.++++|..|+
T Consensus 234 ~~~~~~~~l~gH~~~v~~~~f~p~g-~~i~-----Sgs~D~tvriWd~~~---~~~~~~l~~hs~~is~~~f~~d~~~l~ 304 (456)
T KOG0266|consen 234 DDGRNLKTLKGHSTYVTSVAFSPDG-NLLV-----SGSDDGTVRIWDVRT---GECVRKLKGHSDGISGLAFSPDGNLLV 304 (456)
T ss_pred CCCeEEEEecCCCCceEEEEecCCC-CEEE-----EecCCCcEEEEeccC---CeEEEeeeccCCceEEEEECCCCCEEE
Confidence 43 3345556777889999999996 6665 357788999999998 899999999999999999999999875
Q ss_pred EEEEecccccCceeecceeEEEEeeCCcce-eeeec--CCCC-CeEEEEECcCCCEEEEEEccCCCeEEEEecc-cceeE
Q 013871 158 AVAQSDVDKTNQSYYGESKLNYLTTDGTHE-GLVPL--RKEG-PVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPIL 232 (434)
Q Consensus 158 ~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~-~~v~l--~~~~-~i~~v~wspdg~~~av~~g~~~~~v~l~d~~-~~~~~ 232 (434)
.. +.|...+.|. +..... +...+ .... +++.++|+|+++++++ +..++.+.+||++ ...+.
T Consensus 305 s~---s~d~~i~vwd---------~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~--~~~d~~~~~w~l~~~~~~~ 370 (456)
T KOG0266|consen 305 SA---SYDGTIRVWD---------LETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLS--ASLDRTLKLWDLRSGKSVG 370 (456)
T ss_pred Ec---CCCccEEEEE---------CCCCceeeeecccCCCCCCceeEEEECCCCcEEEE--ecCCCeEEEEEccCCccee
Confidence 43 2355544433 223221 11111 1122 7999999999999994 6778899999997 33333
Q ss_pred Ee--CCc---CeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--C-ceEEEECCCCCEEEEEEcCCcee
Q 013871 233 EL--GSG---PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--C-SVTSEWSPDGRYFMTATTAPRLQ 304 (434)
Q Consensus 233 ~~--~~~---~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~-~~~~~wspdg~~l~tas~~prl~ 304 (434)
.+ |.. .+.....++.|+++++++ .++.|++||..++..+..+.+| . +..+.|+|...++++++..
T Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~i~sg~---~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~---- 443 (456)
T KOG0266|consen 371 TYTGHSNLVRCIFSPTLSTGGKLIYSGS---EDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFE---- 443 (456)
T ss_pred eecccCCcceeEecccccCCCCeEEEEe---CCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcC----
Confidence 33 322 233445688999999999 6679999999999888888777 2 2349999999999999831
Q ss_pred eCCcEEEEeecC
Q 013871 305 IDNGIKIFHHNG 316 (434)
Q Consensus 305 ~D~~i~iw~~~g 316 (434)
.|+.+++|.+..
T Consensus 444 ~d~~~~~w~~~~ 455 (456)
T KOG0266|consen 444 GDGLIRLWKYDF 455 (456)
T ss_pred CCceEEEecCCC
Confidence 189999998764
No 24
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.93 E-value=1.8e-23 Score=203.32 Aligned_cols=278 Identities=13% Similarity=0.172 Sum_probs=221.2
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF 80 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~ 80 (434)
|++++||.|...|++.. .+.++||+..++++++++... -+.+..|-|.+++++.+. +|++.+||+...
T Consensus 376 VRsl~vS~d~~~~~Sga------~~SikiWn~~t~kciRTi~~~-----y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~ 444 (888)
T KOG0306|consen 376 VRSLCVSSDSILLASGA------GESIKIWNRDTLKCIRTITCG-----YILASKFVPGDRYIVLGTKNGELQVFDLASA 444 (888)
T ss_pred eeEEEeecCceeeeecC------CCcEEEEEccCcceeEEeccc-----cEEEEEecCCCceEEEeccCCceEEEEeehh
Confidence 78899999998888765 468999999999999998764 333788999999999996 579999999887
Q ss_pred CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCC--CCCceeeee-------ecccceeEEEECC
Q 013871 81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDL--QSQPLARRS-------FFRCSTVQLNWNR 151 (434)
Q Consensus 81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~--~~~~i~~~~-------~~~~~~~~~~ws~ 151 (434)
......+-|...|.+++.+|++...+. ++.+.+|++|+...-. ++..-..++ -...++.++..||
T Consensus 445 ~l~Eti~AHdgaIWsi~~~pD~~g~vT------~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Sp 518 (888)
T KOG0306|consen 445 SLVETIRAHDGAIWSISLSPDNKGFVT------GSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSP 518 (888)
T ss_pred hhhhhhhccccceeeeeecCCCCceEE------ecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcC
Confidence 666666777788999999999655553 4677899999864211 111111011 1346788999999
Q ss_pred CCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-cce
Q 013871 152 GSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRP 230 (434)
Q Consensus 152 ~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~-~~~ 230 (434)
||++|++.. .|.+.+.||-.+--+++.+.|. .-||.++..|||++.++ +|+-|..|++|-+. +..
T Consensus 519 dgk~LaVsL---LdnTVkVyflDtlKFflsLYGH---------kLPV~smDIS~DSkliv--TgSADKnVKiWGLdFGDC 584 (888)
T KOG0306|consen 519 DGKLLAVSL---LDNTVKVYFLDTLKFFLSLYGH---------KLPVLSMDISPDSKLIV--TGSADKNVKIWGLDFGDC 584 (888)
T ss_pred CCcEEEEEe---ccCeEEEEEecceeeeeeeccc---------ccceeEEeccCCcCeEE--eccCCCceEEeccccchh
Confidence 999987753 6777776665544445555553 67999999999999888 78889999999886 333
Q ss_pred eEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeC
Q 013871 231 ILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQID 306 (434)
Q Consensus 231 ~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~prl~~D 306 (434)
-.++ |...+.++.|-|+..++.++| .+|.|+-||-++.+.+.++.+| .+.+++-+|+|.|+++++. |
T Consensus 585 HKS~fAHdDSvm~V~F~P~~~~FFt~g---KD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~sh------D 655 (888)
T KOG0306|consen 585 HKSFFAHDDSVMSVQFLPKTHLFFTCG---KDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSH------D 655 (888)
T ss_pred hhhhhcccCceeEEEEcccceeEEEec---CcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccC------C
Confidence 3344 789999999999999999999 6679999999999999999887 6778999999999999999 9
Q ss_pred CcEEEEeecCcee
Q 013871 307 NGIKIFHHNGSLF 319 (434)
Q Consensus 307 ~~i~iw~~~g~~~ 319 (434)
.+|++|.-+...+
T Consensus 656 ~sIRlwE~tde~~ 668 (888)
T KOG0306|consen 656 KSIRLWERTDEIL 668 (888)
T ss_pred ceeEeeeccCcce
Confidence 9999999877654
No 25
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.92 E-value=1.9e-22 Score=189.22 Aligned_cols=278 Identities=15% Similarity=0.236 Sum_probs=186.6
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCc----------------------------------
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNM---------------------------------- 47 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~---------------------------------- 47 (434)
|.+|+||||++.++|.+ .|++++|||+.+.++++++.....
T Consensus 238 IfalsWsPDs~~~~T~S-----aDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~ 312 (603)
T KOG0318|consen 238 IFALSWSPDSTQFLTVS-----ADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSV 312 (603)
T ss_pred EEEEEECCCCceEEEec-----CCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCCh
Confidence 68999999999999999 899999999999887776653211
Q ss_pred ------CCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCCCCcee-eeeecCCeeEEEEeCCCCCeEEEEecCCCCCCce
Q 013871 48 ------TKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDFPKGIL-YRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPAS 119 (434)
Q Consensus 48 ------~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~~~~~~-~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~ 119 (434)
|...++++.-++|+++|.++ .|+.|.-|+......... -+.|...|..++.+-. +.++.+ +.+.+
T Consensus 313 ~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~-~~~~t~------g~Dd~ 385 (603)
T KOG0318|consen 313 LKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASES-GELFTI------GWDDT 385 (603)
T ss_pred hheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCC-CcEEEE------ecCCe
Confidence 34567788899999999988 578999999876432111 1334445666655542 122211 11122
Q ss_pred EEEEEcCCCCC---------CCce-------------------eeee-e-------cccceeEEEECCCCCeEEEEEEec
Q 013871 120 VQIYACGKDLQ---------SQPL-------------------ARRS-F-------FRCSTVQLNWNRGSTGLLAVAQSD 163 (434)
Q Consensus 120 v~i~~~~~~~~---------~~~i-------------------~~~~-~-------~~~~~~~~~ws~~G~~l~~~~~~~ 163 (434)
+++.++....- .||. ..+. + ..-....++.+|+++.+++..
T Consensus 386 l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG--- 462 (603)
T KOG0318|consen 386 LRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGG--- 462 (603)
T ss_pred EEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEec---
Confidence 22222210000 0000 0000 0 112234566778888776642
Q ss_pred ccccCceeecceeEEEEeeCCc--ceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeE----EeCCc
Q 013871 164 VDKTNQSYYGESKLNYLTTDGT--HEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPIL----ELGSG 237 (434)
Q Consensus 164 ~d~~~~~~~g~~~l~~l~~~~~--~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~----~~~~~ 237 (434)
.| | ++|...+.+. .+..+.+++.++|.++++|||+.+|| +|+..+++.+||......+ .||+.
T Consensus 463 ~D-------g--kvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla--~~Da~rkvv~yd~~s~~~~~~~w~FHta 531 (603)
T KOG0318|consen 463 QD-------G--KVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLA--AGDASRKVVLYDVASREVKTNRWAFHTA 531 (603)
T ss_pred cc-------c--eEEEEEecCCcccceeeeecccCCceEEEECCCCcEEE--EeccCCcEEEEEcccCceecceeeeeee
Confidence 11 2 2444444443 34445667789999999999999999 5777889999999765543 46999
Q ss_pred CeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC-EEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEee
Q 013871 238 PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG-KQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH 314 (434)
Q Consensus 238 ~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~-~~i~~~~~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~ 314 (434)
.+++++|||+..++|+|+ +|-.|.||+++.- +.+....+| .+..+.|--+ ..+++++. |..||+|++
T Consensus 532 kI~~~aWsP~n~~vATGS---lDt~Viiysv~kP~~~i~iknAH~~gVn~v~wlde-~tvvSsG~------Da~iK~W~v 601 (603)
T KOG0318|consen 532 KINCVAWSPNNKLVATGS---LDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWLDE-STVVSSGQ------DANIKVWNV 601 (603)
T ss_pred eEEEEEeCCCceEEEecc---ccceEEEEEccChhhheEeccccccCceeEEEecC-ceEEeccC------cceeEEecc
Confidence 999999999999999999 5559999999865 334444555 6777999755 67788888 999999997
Q ss_pred c
Q 013871 315 N 315 (434)
Q Consensus 315 ~ 315 (434)
+
T Consensus 602 ~ 602 (603)
T KOG0318|consen 602 T 602 (603)
T ss_pred c
Confidence 4
No 26
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.92 E-value=1.4e-24 Score=197.75 Aligned_cols=272 Identities=12% Similarity=0.211 Sum_probs=203.4
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF 80 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~ 80 (434)
|..|.|+|+|+.|+|++ ..+.+.+|+..+-.- ..+.+ .|...|+++.||++|.+++++. ++.|++|+.+-.
T Consensus 99 V~~v~WtPeGRRLltgs-----~SGEFtLWNg~~fnF-EtilQ--aHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmn 170 (464)
T KOG0284|consen 99 VNVVRWTPEGRRLLTGS-----QSGEFTLWNGTSFNF-ETILQ--AHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMN 170 (464)
T ss_pred eeeEEEcCCCceeEeec-----ccccEEEecCceeeH-HHHhh--hhcccceeEEEccCCCEEEEcCCCceEEecccchh
Confidence 67799999999999998 778999999632211 11112 2447899999999999999995 569999997653
Q ss_pred CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEE
Q 013871 81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVA 160 (434)
Q Consensus 81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~ 160 (434)
........+.+.|++++|||....++.+ ..+++|+||+... ..+...+..|..++.++.|+|.-..|+
T Consensus 171 nVk~~~ahh~eaIRdlafSpnDskF~t~------SdDg~ikiWdf~~---~kee~vL~GHgwdVksvdWHP~kgLia--- 238 (464)
T KOG0284|consen 171 NVKIIQAHHAEAIRDLAFSPNDSKFLTC------SDDGTIKIWDFRM---PKEERVLRGHGWDVKSVDWHPTKGLIA--- 238 (464)
T ss_pred hhHHhhHhhhhhhheeccCCCCceeEEe------cCCCeEEEEeccC---CchhheeccCCCCcceeccCCccceeE---
Confidence 3322233345789999999974344432 4568999999987 667777799999999999999765433
Q ss_pred EecccccCceeecceeEEEEeeCCcceeeeecC-CCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-cceeEEe--CC
Q 013871 161 QSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR-KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL--GS 236 (434)
Q Consensus 161 ~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~-~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~-~~~~~~~--~~ 236 (434)
+...|...+.| +...+ .|..++. +...|..+.|+|++++|+ +++.|..+++||++ -+.++.+ |+
T Consensus 239 sgskDnlVKlW---------DprSg-~cl~tlh~HKntVl~~~f~~n~N~Ll--t~skD~~~kv~DiR~mkEl~~~r~Hk 306 (464)
T KOG0284|consen 239 SGSKDNLVKLW---------DPRSG-SCLATLHGHKNTVLAVKFNPNGNWLL--TGSKDQSCKVFDIRTMKELFTYRGHK 306 (464)
T ss_pred EccCCceeEee---------cCCCc-chhhhhhhccceEEEEEEcCCCCeeE--EccCCceEEEEehhHhHHHHHhhcch
Confidence 23344444433 33333 4444443 478999999999999988 78899999999998 3444444 88
Q ss_pred cCeeEEEECCCCC-eEEEEecCCCCCeEEEEEccCCEEEEEe-eCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEE
Q 013871 237 GPYNTVRWNPKGK-FLCLAGFGNLPGDMAFWDYVDGKQLGTT-RAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIF 312 (434)
Q Consensus 237 ~~~~~i~~SP~g~-~l~~~~~~~~~g~i~iwd~~~~~~i~~~-~~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw 312 (434)
..++++.|+|--. +|.+|| .+|.|.+|.+...+.+..+ .+| .+.+++|+|=|..|++|+. |+++++|
T Consensus 307 kdv~~~~WhP~~~~lftsgg---~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsn------d~t~rfw 377 (464)
T KOG0284|consen 307 KDVTSLTWHPLNESLFTSGG---SDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSN------DRTVRFW 377 (464)
T ss_pred hhheeeccccccccceeecc---CCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCC------Ccceeee
Confidence 9999999999665 666666 6689999998854444443 334 6778999999999999998 9999999
Q ss_pred ee
Q 013871 313 HH 314 (434)
Q Consensus 313 ~~ 314 (434)
.-
T Consensus 378 ~r 379 (464)
T KOG0284|consen 378 TR 379 (464)
T ss_pred cc
Confidence 85
No 27
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=2.5e-22 Score=174.34 Aligned_cols=279 Identities=15% Similarity=0.215 Sum_probs=206.1
Q ss_pred cceEEecCC-CcEEEEEecCCCCCCCcEEEEEcCCCcE-EEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCC
Q 013871 2 LLLLTCLRV-GLIIQTFQKSSTPQEKNVILWKTETGEA-VYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTT 78 (434)
Q Consensus 2 V~~l~fSP~-g~~L~t~~~~~~~~d~~v~iWd~~~g~~-~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~ 78 (434)
|+.++|+|- |..|+|++ .|+.|+||++..+.. ...-.....|+..++.++|||.|+|||++ .|.++.||.-.
T Consensus 17 ~W~~awhp~~g~ilAscg-----~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~ 91 (312)
T KOG0645|consen 17 VWSVAWHPGKGVILASCG-----TDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKE 91 (312)
T ss_pred EEEEEeccCCceEEEeec-----CCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecC
Confidence 688999998 99999999 899999999875432 11111222466889999999999999998 57899999876
Q ss_pred C--CCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeE
Q 013871 79 D--FPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGL 156 (434)
Q Consensus 79 ~--~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l 156 (434)
+ |+.......|...|++++||++ +.++|....+ ..|-||.+....+-..+..++.|..++..+.|+|.-..
T Consensus 92 ~~efecv~~lEGHEnEVK~Vaws~s-G~~LATCSRD-----KSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dl- 164 (312)
T KOG0645|consen 92 DGEFECVATLEGHENEVKCVAWSAS-GNYLATCSRD-----KSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDL- 164 (312)
T ss_pred CCceeEEeeeeccccceeEEEEcCC-CCEEEEeeCC-----CeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcce-
Confidence 4 3443444556667999999999 7888865544 47999999865556777888999999999999997654
Q ss_pred EEEEEecccccCceeecceeEEEEeeCCcceeeeecC-CCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeEEeC
Q 013871 157 LAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR-KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELG 235 (434)
Q Consensus 157 ~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~-~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~~~ 235 (434)
+++...|.+.+.|. -...+..++..+|+ ++..|.+++|+|+|.+++ +++.|+.+.||-..+. +..+|
T Consensus 165 --L~S~SYDnTIk~~~-------~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~--s~sdD~tv~Iw~~~~~-~~~~~ 232 (312)
T KOG0645|consen 165 --LFSCSYDNTIKVYR-------DEDDDDWECVQTLDGHENTVWSLAFDNIGSRLV--SCSDDGTVSIWRLYTD-LSGMH 232 (312)
T ss_pred --eEEeccCCeEEEEe-------ecCCCCeeEEEEecCccceEEEEEecCCCceEE--EecCCcceEeeeeccC-cchhc
Confidence 33444677777553 22234445555655 366999999999999998 6788999999976532 22346
Q ss_pred CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC------EEEE-EeeCC--CceEEEECCC-CCEEEEEEcCCceee
Q 013871 236 SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG------KQLG-TTRAE--CSVTSEWSPD-GRYFMTATTAPRLQI 305 (434)
Q Consensus 236 ~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~------~~i~-~~~~~--~~~~~~wspd-g~~l~tas~~prl~~ 305 (434)
...+..+.|. ...||+++ .++.|.+|-.... +++. ...+| .+..++|.|. ...|++++.
T Consensus 233 sr~~Y~v~W~--~~~IaS~g---gD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~D------ 301 (312)
T KOG0645|consen 233 SRALYDVPWD--NGVIASGG---GDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGD------ 301 (312)
T ss_pred ccceEeeeec--ccceEecc---CCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCC------
Confidence 7888889998 45788887 4468999976542 2222 22233 6677999995 667788888
Q ss_pred CCcEEEEeec
Q 013871 306 DNGIKIFHHN 315 (434)
Q Consensus 306 D~~i~iw~~~ 315 (434)
||.|++|.+.
T Consensus 302 DG~v~~W~l~ 311 (312)
T KOG0645|consen 302 DGIVNFWELE 311 (312)
T ss_pred CceEEEEEec
Confidence 9999999864
No 28
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.92 E-value=4e-22 Score=174.72 Aligned_cols=265 Identities=14% Similarity=0.132 Sum_probs=204.8
Q ss_pred CCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcC
Q 013871 48 TKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACG 126 (434)
Q Consensus 48 ~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~ 126 (434)
|...+.++.|++|+++|++++ |+.+.|||.-+.++.....+...-|..+++||. +..+|+ +|.+..+.||++.
T Consensus 54 H~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPS-g~~VAc-----GGLdN~Csiy~ls 127 (343)
T KOG0286|consen 54 HLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPS-GNFVAC-----GGLDNKCSIYPLS 127 (343)
T ss_pred cccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCC-CCeEEe-----cCcCceeEEEecc
Confidence 447788999999999999985 689999999887776777788888999999999 677875 6888999999998
Q ss_pred CCCC---CCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEE
Q 013871 127 KDLQ---SQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQW 203 (434)
Q Consensus 127 ~~~~---~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~w 203 (434)
.... ....+.+..|.....+..|-+|+.. + +.+ .|. +.-++++..+.....-..|.+.|.++++
T Consensus 128 ~~d~~g~~~v~r~l~gHtgylScC~f~dD~~i-l--T~S-GD~---------TCalWDie~g~~~~~f~GH~gDV~slsl 194 (343)
T KOG0286|consen 128 TRDAEGNVRVSRELAGHTGYLSCCRFLDDNHI-L--TGS-GDM---------TCALWDIETGQQTQVFHGHTGDVMSLSL 194 (343)
T ss_pred cccccccceeeeeecCccceeEEEEEcCCCce-E--ecC-CCc---------eEEEEEcccceEEEEecCCcccEEEEec
Confidence 5311 1233455667777778888886653 2 211 333 3334444444333333456899999999
Q ss_pred Cc-CCCEEEEEEccCCCeEEEEeccc-ceeEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC
Q 013871 204 SY-SGSEFAVVYGFMPASATIFNKKC-RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA 279 (434)
Q Consensus 204 sp-dg~~~av~~g~~~~~v~l~d~~~-~~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~ 279 (434)
+| +++.|+ +|.-|+..+|||++. ..+..| |...||++.|.|+|.-+++|+ .|++.++||++....+..+..
T Consensus 195 ~p~~~ntFv--Sg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGS---DD~tcRlyDlRaD~~~a~ys~ 269 (343)
T KOG0286|consen 195 SPSDGNTFV--SGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGS---DDATCRLYDLRADQELAVYSH 269 (343)
T ss_pred CCCCCCeEE--ecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecC---CCceeEEEeecCCcEEeeecc
Confidence 99 899998 788899999999973 334444 889999999999999999988 668999999999888888876
Q ss_pred C----CceEEEECCCCCEEEEEEcCCceeeCCcEEEEee-cCcee--eeeecccceeeEEEcCCCCCCCC
Q 013871 280 E----CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLF--FKKMFDKLFQAEWKPVSPDKFGD 342 (434)
Q Consensus 280 ~----~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~-~g~~~--~~~~~~~~~~~~w~p~~~~~~~~ 342 (434)
. .++.++||-.||+|+.+.. |.++.+||. .|+.+ ...|..++.++.-.|++.-+.+.
T Consensus 270 ~~~~~gitSv~FS~SGRlLfagy~------d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~Tg 333 (343)
T KOG0286|consen 270 DSIICGITSVAFSKSGRLLFAGYD------DFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATG 333 (343)
T ss_pred CcccCCceeEEEcccccEEEeeec------CCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEec
Confidence 5 5667999999999999988 999999997 44433 33466789999999988665554
No 29
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.92 E-value=3e-23 Score=182.42 Aligned_cols=259 Identities=10% Similarity=0.207 Sum_probs=194.7
Q ss_pred CcceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCc-EEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCC
Q 013871 1 MLLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGE-AVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTT 78 (434)
Q Consensus 1 ~V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~-~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~ 78 (434)
.|..+.|+|+|.+|+|.+ .|..|.+|++.... ....+.+ |...+..+.|++|++.+++++ |.+|+.||+.
T Consensus 49 eI~~~~F~P~gs~~aSgG-----~Dr~I~LWnv~gdceN~~~lkg---HsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~ 120 (338)
T KOG0265|consen 49 EIYTIKFHPDGSCFASGG-----SDRAIVLWNVYGDCENFWVLKG---HSGAVMELHGMRDGSHILSCGTDKTVRGWDAE 120 (338)
T ss_pred eEEEEEECCCCCeEeecC-----CcceEEEEeccccccceeeecc---ccceeEeeeeccCCCEEEEecCCceEEEEecc
Confidence 478999999999999988 89999999975332 2233333 457788999999999998885 5699999999
Q ss_pred CCCCceeeeeecCCeeEEEEeCCC-CCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEE
Q 013871 79 DFPKGILYRLRVPGVAAFEVSKAP-GSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLL 157 (434)
Q Consensus 79 ~~~~~~~~~~~~~~v~~~~~sp~~-~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~ 157 (434)
........+.|..-|..+. |.. ++.+.+ ++..+++++|||+.. ..
T Consensus 121 tG~~~rk~k~h~~~vNs~~--p~rrg~~lv~----SgsdD~t~kl~D~R~---k~------------------------- 166 (338)
T KOG0265|consen 121 TGKRIRKHKGHTSFVNSLD--PSRRGPQLVC----SGSDDGTLKLWDIRK---KE------------------------- 166 (338)
T ss_pred cceeeehhccccceeeecC--ccccCCeEEE----ecCCCceEEEEeecc---cc-------------------------
Confidence 8766555666666666554 332 222221 334456677777644 11
Q ss_pred EEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-ceeEEe--
Q 013871 158 AVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL-- 234 (434)
Q Consensus 158 ~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~-~~~~~~-- 234 (434)
...+++...+++++.|..++.+.. +|..|+.|++||++. ..++.+
T Consensus 167 ------------------------------~~~t~~~kyqltAv~f~d~s~qv~--sggIdn~ikvWd~r~~d~~~~lsG 214 (338)
T KOG0265|consen 167 ------------------------------AIKTFENKYQLTAVGFKDTSDQVI--SGGIDNDIKVWDLRKNDGLYTLSG 214 (338)
T ss_pred ------------------------------hhhccccceeEEEEEeccccccee--eccccCceeeeccccCcceEEeec
Confidence 111111245678899998888887 699999999999953 334444
Q ss_pred CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccC----CEEEEEeeCC------CceEEEECCCCCEEEEEEcCCcee
Q 013871 235 GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD----GKQLGTTRAE------CSVTSEWSPDGRYFMTATTAPRLQ 304 (434)
Q Consensus 235 ~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~----~~~i~~~~~~------~~~~~~wspdg~~l~tas~~prl~ 304 (434)
|..+|+.+..||+|.++++-+.+ .++++||++- .+++..+.++ +...|+|||+++++..++.
T Consensus 215 h~DtIt~lsls~~gs~llsnsMd---~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~----- 286 (338)
T KOG0265|consen 215 HADTITGLSLSRYGSFLLSNSMD---NTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSA----- 286 (338)
T ss_pred ccCceeeEEeccCCCcccccccc---ceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccc-----
Confidence 88999999999999999998845 5999999874 3668888775 4455999999999999998
Q ss_pred eCCcEEEEeecC-ceeeee--ecccceeeEEEcCCCCCCCC
Q 013871 305 IDNGIKIFHHNG-SLFFKK--MFDKLFQAEWKPVSPDKFGD 342 (434)
Q Consensus 305 ~D~~i~iw~~~g-~~~~~~--~~~~~~~~~w~p~~~~~~~~ 342 (434)
|..+.+||..+ .++|.. +...+.++.|.|..+.+++.
T Consensus 287 -dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~ 326 (338)
T KOG0265|consen 287 -DRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSC 326 (338)
T ss_pred -cceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEe
Confidence 99999999988 566765 56789999999999888775
No 30
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.6e-22 Score=194.81 Aligned_cols=274 Identities=16% Similarity=0.194 Sum_probs=204.4
Q ss_pred eEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCCCC
Q 013871 4 LLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDFPK 82 (434)
Q Consensus 4 ~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~~~ 82 (434)
.|+||. .+.|+.+. ...|.+|+..+|+....+... .+.+.++.|+++|.+||.+ .++.|.|||......
T Consensus 182 lldWss-~n~laVal------g~~vylW~~~s~~v~~l~~~~---~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~ 251 (484)
T KOG0305|consen 182 LLDWSS-ANVLAVAL------GQSVYLWSASSGSVTELCSFG---EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKK 251 (484)
T ss_pred Hhhccc-CCeEEEEe------cceEEEEecCCCceEEeEecC---CCceEEEEECCCCCEEEEeecCCeEEEEehhhccc
Confidence 467884 45555544 468999999999865555443 2778899999999999999 578999999877655
Q ss_pred ceeeee-ecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceee-eeecccceeEEEECCCCCeEEEEE
Q 013871 83 GILYRL-RVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLAR-RSFFRCSTVQLNWNRGSTGLLAVA 160 (434)
Q Consensus 83 ~~~~~~-~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~-~~~~~~~~~~~~ws~~G~~l~~~~ 160 (434)
...... |...|.+++|... .+. .+...+.|..+++.. .+.+.. ...|..++|.++|++||.++ +
T Consensus 252 ~~~~~~~h~~rvg~laW~~~---~ls-----sGsr~~~I~~~dvR~---~~~~~~~~~~H~qeVCgLkws~d~~~l---A 317 (484)
T KOG0305|consen 252 TRTLRGSHASRVGSLAWNSS---VLS-----SGSRDGKILNHDVRI---SQHVVSTLQGHRQEVCGLKWSPDGNQL---A 317 (484)
T ss_pred cccccCCcCceeEEEeccCc---eEE-----EecCCCcEEEEEEec---chhhhhhhhcccceeeeeEECCCCCee---c
Confidence 455555 7778999999843 222 345667888899876 333333 77899999999999999985 4
Q ss_pred EecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECc-CCCEEEEEEccCCCeEEEEecccc-eeEEe-CCc
Q 013871 161 QSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSY-SGSEFAVVYGFMPASATIFNKKCR-PILEL-GSG 237 (434)
Q Consensus 161 ~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wsp-dg~~~av~~g~~~~~v~l~d~~~~-~~~~~-~~~ 237 (434)
+...|.....|. .........-.++.+.|..++|+| ....||+-.|..|+.|++||.... .+... ...
T Consensus 318 SGgnDN~~~Iwd---------~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgs 388 (484)
T KOG0305|consen 318 SGGNDNVVFIWD---------GLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGS 388 (484)
T ss_pred cCCCccceEecc---------CCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCC
Confidence 444454443332 222212222234588999999999 556777766678889999999644 44444 577
Q ss_pred CeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec
Q 013871 238 PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN 315 (434)
Q Consensus 238 ~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~ 315 (434)
.|..|.|||..+-|+++ .|..+..|.||+..+.+.+..+.+| .+..++|||||++|++|+. |.++++|++-
T Consensus 389 QVcsL~Wsk~~kEi~st-hG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~------DETlrfw~~f 461 (484)
T KOG0305|consen 389 QVCSLIWSKKYKELLST-HGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAA------DETLRFWNLF 461 (484)
T ss_pred ceeeEEEcCCCCEEEEe-cCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecc------cCcEEecccc
Confidence 89999999999877654 2334569999999999999999888 5667999999999999999 9999999986
Q ss_pred Cc
Q 013871 316 GS 317 (434)
Q Consensus 316 g~ 317 (434)
+.
T Consensus 462 ~~ 463 (484)
T KOG0305|consen 462 DE 463 (484)
T ss_pred CC
Confidence 64
No 31
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.92 E-value=5.7e-22 Score=171.24 Aligned_cols=278 Identities=13% Similarity=0.192 Sum_probs=194.5
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCC-CcEEEEe-cCCeEEEEeCCC
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSD-EAVACRM-ATNEIQFFDTTD 79 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d-~~~la~~-~~~~i~v~~~~~ 79 (434)
|.+++|.-+|++|++.+ .|+.+.||++.-++.+....... |...+-.+.|.|- ...|++. ++..|++||...
T Consensus 23 v~Sv~wn~~g~~lasgs-----~dktv~v~n~e~~r~~~~~~~~g-h~~svdql~w~~~~~d~~atas~dk~ir~wd~r~ 96 (313)
T KOG1407|consen 23 VHSVAWNCDGTKLASGS-----FDKTVSVWNLERDRFRKELVYRG-HTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRS 96 (313)
T ss_pred ceEEEEcccCceeeecc-----cCCceEEEEecchhhhhhhcccC-CCcchhhheeCCCCCcceEEecCCceEEEEEecc
Confidence 57899999999999988 89999999998776555544433 3456667889873 3455555 677999999877
Q ss_pred CCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEE
Q 013871 80 FPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAV 159 (434)
Q Consensus 80 ~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~ 159 (434)
...........++ ..+.|+|+ +.++++ .+.+..|...+..+ .+..... -++..+..+.|+.++. +.++
T Consensus 97 ~k~~~~i~~~~en-i~i~wsp~-g~~~~~-----~~kdD~it~id~r~---~~~~~~~-~~~~e~ne~~w~~~nd-~Ffl 164 (313)
T KOG1407|consen 97 GKCTARIETKGEN-INITWSPD-GEYIAV-----GNKDDRITFIDART---YKIVNEE-QFKFEVNEISWNNSND-LFFL 164 (313)
T ss_pred CcEEEEeeccCcc-eEEEEcCC-CCEEEE-----ecCcccEEEEEecc---cceeehh-cccceeeeeeecCCCC-EEEE
Confidence 4432222333333 45789999 455544 24556778888766 3333333 3445677889996555 4455
Q ss_pred EEecccccCceeecceeEEEEeeCCcceeeeecC-CCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc---cceeEEeC
Q 013871 160 AQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR-KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK---CRPILELG 235 (434)
Q Consensus 160 ~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~-~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~---~~~~~~~~ 235 (434)
+..- | .+..|.-... +....+. +.....++.|+|+|++|| +|+.|+.+.|||+. |.-.+.-.
T Consensus 165 t~Gl---------G--~v~ILsypsL-kpv~si~AH~snCicI~f~p~GryfA--~GsADAlvSLWD~~ELiC~R~isRl 230 (313)
T KOG1407|consen 165 TNGL---------G--CVEILSYPSL-KPVQSIKAHPSNCICIEFDPDGRYFA--TGSADALVSLWDVDELICERCISRL 230 (313)
T ss_pred ecCC---------c--eEEEEecccc-ccccccccCCcceEEEEECCCCceEe--eccccceeeccChhHhhhheeeccc
Confidence 4321 1 2333332211 1111221 356778999999999999 59999999999985 44444457
Q ss_pred CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceE-EEECCCCCEEEEEEcCCce---eeCCcEEE
Q 013871 236 SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVT-SEWSPDGRYFMTATTAPRL---QIDNGIKI 311 (434)
Q Consensus 236 ~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~-~~wspdg~~l~tas~~prl---~~D~~i~i 311 (434)
.-+|.+|.||-||++||+|+ .|.-|.|-++++|..+..++....+. ++|+|....|+.|...+.- |-.+++||
T Consensus 231 dwpVRTlSFS~dg~~lASaS---EDh~IDIA~vetGd~~~eI~~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKi 307 (313)
T KOG1407|consen 231 DWPVRTLSFSHDGRMLASAS---EDHFIDIAEVETGDRVWEIPCEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKI 307 (313)
T ss_pred cCceEEEEeccCcceeeccC---ccceEEeEecccCCeEEEeeccCCceeEEecCCCceeeEEecCCCCccccccceeEE
Confidence 88999999999999999999 55699999999999999988775554 9999999999999875421 22267888
Q ss_pred Eee
Q 013871 312 FHH 314 (434)
Q Consensus 312 w~~ 314 (434)
|-+
T Consensus 308 FG~ 310 (313)
T KOG1407|consen 308 FGL 310 (313)
T ss_pred ecC
Confidence 754
No 32
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.92 E-value=5.5e-23 Score=177.99 Aligned_cols=285 Identities=15% Similarity=0.242 Sum_probs=217.5
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF 80 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~ 80 (434)
++.|.|..+|..|.+++ .|....||-..+|+.+.++.++.. ..| |+...-+.++|++++ |+++++||+...
T Consensus 13 lTqiKyN~eGDLlFsca-----KD~~~~vw~s~nGerlGty~GHtG--avW-~~Did~~s~~liTGSAD~t~kLWDv~tG 84 (327)
T KOG0643|consen 13 LTQIKYNREGDLLFSCA-----KDSTPTVWYSLNGERLGTYDGHTG--AVW-CCDIDWDSKHLITGSADQTAKLWDVETG 84 (327)
T ss_pred cceEEecCCCcEEEEec-----CCCCceEEEecCCceeeeecCCCc--eEE-EEEecCCcceeeeccccceeEEEEcCCC
Confidence 56789999999999999 899999999999999999998754 777 999999999999994 679999999986
Q ss_pred CCceeeeeecC-CeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCC----CCCceeeeeecccceeEEEECCCCCe
Q 013871 81 PKGILYRLRVP-GVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDL----QSQPLARRSFFRCSTVQLNWNRGSTG 155 (434)
Q Consensus 81 ~~~~~~~~~~~-~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~----~~~~i~~~~~~~~~~~~~~ws~~G~~ 155 (434)
.. ....... .|+.+.|+++ +.++++......+..+.|.+++++... ...++..+.-.....+.+-|+|.|+.
T Consensus 85 k~--la~~k~~~~Vk~~~F~~~-gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ 161 (327)
T KOG0643|consen 85 KQ--LATWKTNSPVKRVDFSFG-GNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGET 161 (327)
T ss_pred cE--EEEeecCCeeEEEeeccC-CcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCE
Confidence 53 3344432 5889999998 566666677778899999999998532 24556666666677788999999998
Q ss_pred EEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-ceeEEe
Q 013871 156 LLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL 234 (434)
Q Consensus 156 l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~-~~~~~~ 234 (434)
|+.. +.|.....|.-.++..+++.... +...|++++++||..+|+ +++.|.+.++||.+. ..+.++
T Consensus 162 ii~G---he~G~is~~da~~g~~~v~s~~~--------h~~~Ind~q~s~d~T~Fi--T~s~Dttakl~D~~tl~v~Kty 228 (327)
T KOG0643|consen 162 IIAG---HEDGSISIYDARTGKELVDSDEE--------HSSKINDLQFSRDRTYFI--TGSKDTTAKLVDVRTLEVLKTY 228 (327)
T ss_pred EEEe---cCCCcEEEEEcccCceeeechhh--------hccccccccccCCcceEE--ecccCccceeeeccceeeEEEe
Confidence 7653 34555555544443333333222 256899999999999998 799999999999975 445555
Q ss_pred -CCcCeeEEEECCCCCeEEEEecCCCCCeE------------EEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEc
Q 013871 235 -GSGPYNTVRWNPKGKFLCLAGFGNLPGDM------------AFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATT 299 (434)
Q Consensus 235 -~~~~~~~i~~SP~g~~l~~~~~~~~~g~i------------~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~ 299 (434)
...|+|+.+++|.-.+++++|..+ ...| ++|++--.+.+...++| .+..++++|||...++++.
T Consensus 229 ~te~PvN~aaisP~~d~VilgGGqe-A~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGE 307 (327)
T KOG0643|consen 229 TTERPVNTAAISPLLDHVILGGGQE-AMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGE 307 (327)
T ss_pred eecccccceecccccceEEecCCce-eeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCC
Confidence 578999999999999988887432 1112 22333233466777777 5556999999999999999
Q ss_pred CCceeeCCcEEEEeecCc
Q 013871 300 APRLQIDNGIKIFHHNGS 317 (434)
Q Consensus 300 ~prl~~D~~i~iw~~~g~ 317 (434)
|+.|+|.+++..
T Consensus 308 ------DG~VR~h~Fd~~ 319 (327)
T KOG0643|consen 308 ------DGYVRLHHFDSN 319 (327)
T ss_pred ------CceEEEEEeccc
Confidence 999999987654
No 33
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.91 E-value=2.4e-23 Score=193.55 Aligned_cols=273 Identities=15% Similarity=0.191 Sum_probs=202.2
Q ss_pred CcceEEecC-CCcEEEEEecCCCCCCCcEEEEEcCC-CcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeC
Q 013871 1 MLLLLTCLR-VGLIIQTFQKSSTPQEKNVILWKTET-GEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDT 77 (434)
Q Consensus 1 ~V~~l~fSP-~g~~L~t~~~~~~~~d~~v~iWd~~~-g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~ 77 (434)
.|+++.|.| .|.+|++++ .|+.|+||++-. +.++++|.+++ ..+..+.||.+|..+.++ .|..|++||+
T Consensus 216 gvsai~~fp~~~hLlLS~g-----mD~~vklW~vy~~~~~lrtf~gH~---k~Vrd~~~s~~g~~fLS~sfD~~lKlwDt 287 (503)
T KOG0282|consen 216 GVSAIQWFPKKGHLLLSGG-----MDGLVKLWNVYDDRRCLRTFKGHR---KPVRDASFNNCGTSFLSASFDRFLKLWDT 287 (503)
T ss_pred ccchhhhccceeeEEEecC-----CCceEEEEEEecCcceehhhhcch---hhhhhhhccccCCeeeeeecceeeeeecc
Confidence 478999999 889999988 899999999976 89999999875 788899999999877766 6889999999
Q ss_pred CCCCCceeeeeecC-CeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeE
Q 013871 78 TDFPKGILYRLRVP-GVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGL 156 (434)
Q Consensus 78 ~~~~~~~~~~~~~~-~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l 156 (434)
..+. ...+++.. -+.++.+.|++.+.+.+ ++.++.|+.||+.+ +..+....-+-..+..+.|-++|.+.
T Consensus 288 ETG~--~~~~f~~~~~~~cvkf~pd~~n~fl~-----G~sd~ki~~wDiRs---~kvvqeYd~hLg~i~~i~F~~~g~rF 357 (503)
T KOG0282|consen 288 ETGQ--VLSRFHLDKVPTCVKFHPDNQNIFLV-----GGSDKKIRQWDIRS---GKVVQEYDRHLGAILDITFVDEGRRF 357 (503)
T ss_pred ccce--EEEEEecCCCceeeecCCCCCcEEEE-----ecCCCcEEEEeccc---hHHHHHHHhhhhheeeeEEccCCceE
Confidence 8865 33455554 36788999996344332 57788999999988 66666666666777888999999985
Q ss_pred EEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc------ce
Q 013871 157 LAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC------RP 230 (434)
Q Consensus 157 ~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~------~~ 230 (434)
+.. ..|++.+.| ..++.-.....+. ...-...++..+|+++.|+ ..+|++.+.+|.+.. ..
T Consensus 358 iss---SDdks~riW-------e~~~~v~ik~i~~-~~~hsmP~~~~~P~~~~~~--aQs~dN~i~ifs~~~~~r~nkkK 424 (503)
T KOG0282|consen 358 ISS---SDDKSVRIW-------ENRIPVPIKNIAD-PEMHTMPCLTLHPNGKWFA--AQSMDNYIAIFSTVPPFRLNKKK 424 (503)
T ss_pred eee---ccCccEEEE-------EcCCCccchhhcc-hhhccCcceecCCCCCeeh--hhccCceEEEEecccccccCHhh
Confidence 432 244444433 2211111000000 0122345789999999999 689999999997531 12
Q ss_pred eEEeC--CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCE-EEEEEcCCceee
Q 013871 231 ILELG--SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRY-FMTATTAPRLQI 305 (434)
Q Consensus 231 ~~~~~--~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~-l~tas~~prl~~ 305 (434)
.+.-| .+.-..+.|||||++|++|. .+|.+.+||.++-+++..+.+| .++.+.|+|.... ++|++-
T Consensus 425 ~feGh~vaGys~~v~fSpDG~~l~SGd---sdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w------ 495 (503)
T KOG0282|consen 425 RFEGHSVAGYSCQVDFSPDGRTLCSGD---SDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGW------ 495 (503)
T ss_pred hhcceeccCceeeEEEcCCCCeEEeec---CCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEeccc------
Confidence 22223 45556799999999999988 6789999999999999999988 3344999998665 555554
Q ss_pred CCcEEEEe
Q 013871 306 DNGIKIFH 313 (434)
Q Consensus 306 D~~i~iw~ 313 (434)
||.|+||+
T Consensus 496 ~G~Ikiwd 503 (503)
T KOG0282|consen 496 DGLIKIWD 503 (503)
T ss_pred CceeEecC
Confidence 99999996
No 34
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=3.3e-22 Score=180.00 Aligned_cols=273 Identities=15% Similarity=0.186 Sum_probs=213.4
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCC-eEEEEeCCCC
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATN-EIQFFDTTDF 80 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~-~i~v~~~~~~ 80 (434)
|+.+-|.|+-..+++++ +|.+|++||..+|++++.+.++. ..+..+.|+..|+++++++.+ .+++||...+
T Consensus 111 vt~v~~hp~~~~v~~as-----~d~tikv~D~~tg~~e~~LrGHt---~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~ 182 (406)
T KOG0295|consen 111 VTRVIFHPSEALVVSAS-----EDATIKVFDTETGELERSLRGHT---DSVFDISFDASGKYLATCSSDLSAKLWDFDTF 182 (406)
T ss_pred eeeeeeccCceEEEEec-----CCceEEEEEccchhhhhhhhccc---cceeEEEEecCccEEEecCCccchhheeHHHH
Confidence 56788999999999988 89999999999999988877654 557799999999999999766 5999998763
Q ss_pred -CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEE
Q 013871 81 -PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAV 159 (434)
Q Consensus 81 -~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~ 159 (434)
+.......+..+|.++.+=|.++.++. .+.+.+|+.|++.+ +-.+.+...+..-+..+.-+.||.. +
T Consensus 183 ~~c~ks~~gh~h~vS~V~f~P~gd~ilS------~srD~tik~We~~t---g~cv~t~~~h~ewvr~v~v~~DGti---~ 250 (406)
T KOG0295|consen 183 FRCIKSLIGHEHGVSSVFFLPLGDHILS------CSRDNTIKAWECDT---GYCVKTFPGHSEWVRMVRVNQDGTI---I 250 (406)
T ss_pred HHHHHHhcCcccceeeEEEEecCCeeee------cccccceeEEeccc---ceeEEeccCchHhEEEEEecCCeeE---E
Confidence 332333445668999999998544433 35567899999998 7888888888877778888889875 3
Q ss_pred EEecccccCceeecceeEEEEeeCCcceeeeec-CCCCCeEEEEECcCCC--------------EEEEEEccCCCeEEEE
Q 013871 160 AQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL-RKEGPVHDVQWSYSGS--------------EFAVVYGFMPASATIF 224 (434)
Q Consensus 160 ~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l-~~~~~i~~v~wspdg~--------------~~av~~g~~~~~v~l~ 224 (434)
++.+.|.+... |.+. ..++...+ +++-+|..++|.|... .+.+ +++.|++|++|
T Consensus 251 As~s~dqtl~v-------W~~~---t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~-s~SrDktIk~w 319 (406)
T KOG0295|consen 251 ASCSNDQTLRV-------WVVA---TKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLG-SGSRDKTIKIW 319 (406)
T ss_pred EecCCCceEEE-------EEec---cchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEE-eecccceEEEE
Confidence 44445555543 3332 12233322 3477888999876421 3443 58899999999
Q ss_pred ecc-cceeEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEc
Q 013871 225 NKK-CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATT 299 (434)
Q Consensus 225 d~~-~~~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~ 299 (434)
|+. +..++++ |..-|..++|+|.|+||+++. .|+++++||+++++++....+| -++.++|.-+-.|++||+-
T Consensus 320 dv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~Sca---DDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsV 396 (406)
T KOG0295|consen 320 DVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCA---DDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSV 396 (406)
T ss_pred eccCCeEEEEEecccceeeeeEEcCCCeEEEEEe---cCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccc
Confidence 995 6677777 788899999999999999998 6679999999999999998876 5667999999999999998
Q ss_pred CCceeeCCcEEEEee
Q 013871 300 APRLQIDNGIKIFHH 314 (434)
Q Consensus 300 ~prl~~D~~i~iw~~ 314 (434)
|..+++|..
T Consensus 397 ------dqt~KvwEc 405 (406)
T KOG0295|consen 397 ------DQTVKVWEC 405 (406)
T ss_pred ------cceeeeeec
Confidence 999999964
No 35
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=1.5e-20 Score=166.87 Aligned_cols=272 Identities=13% Similarity=0.158 Sum_probs=195.1
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec---CCeEEEEeCC
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA---TNEIQFFDTT 78 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~---~~~i~v~~~~ 78 (434)
|.+|.||++|.+|++.+ +|..|+|||..+|+.++++..+. .++..+.|......+..++ |++|+.-++.
T Consensus 17 i~sl~fs~~G~~litss-----~dDsl~LYd~~~g~~~~ti~skk---yG~~~~~Fth~~~~~i~sStk~d~tIryLsl~ 88 (311)
T KOG1446|consen 17 INSLDFSDDGLLLITSS-----EDDSLRLYDSLSGKQVKTINSKK---YGVDLACFTHHSNTVIHSSTKEDDTIRYLSLH 88 (311)
T ss_pred eeEEEecCCCCEEEEec-----CCCeEEEEEcCCCceeeEeeccc---ccccEEEEecCCceEEEccCCCCCceEEEEee
Confidence 67999999999999988 88999999999999999988876 5666889988777666553 5799999988
Q ss_pred CCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEE
Q 013871 79 DFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLA 158 (434)
Q Consensus 79 ~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~ 158 (434)
+..-......|...|.+++.+|.++..+. ...+.+|++|++.. ..+...+.. ......++.|+|-.+++
T Consensus 89 dNkylRYF~GH~~~V~sL~~sP~~d~FlS------~S~D~tvrLWDlR~---~~cqg~l~~--~~~pi~AfDp~GLifA~ 157 (311)
T KOG1446|consen 89 DNKYLRYFPGHKKRVNSLSVSPKDDTFLS------SSLDKTVRLWDLRV---KKCQGLLNL--SGRPIAAFDPEGLIFAL 157 (311)
T ss_pred cCceEEEcCCCCceEEEEEecCCCCeEEe------cccCCeEEeeEecC---CCCceEEec--CCCcceeECCCCcEEEE
Confidence 75544455677788999999998765553 46677999999975 233222222 23335678999876555
Q ss_pred EEEecccccCceeecceeEEEEeeCCc-ceeeeecC--CCCCeEEEEECcCCCEEEEEEccCCCeEEEEec-ccceeEEe
Q 013871 159 VAQSDVDKTNQSYYGESKLNYLTTDGT-HEGLVPLR--KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNK-KCRPILEL 234 (434)
Q Consensus 159 ~~~~~~d~~~~~~~g~~~l~~l~~~~~-~~~~v~l~--~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~-~~~~~~~~ 234 (434)
...+ ..+ .||.+...+. --..+.+. .......+.|||||+.+.+. .+.+.+.+.|. ++....++
T Consensus 158 ~~~~---~~I-------kLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLls--T~~s~~~~lDAf~G~~~~tf 225 (311)
T KOG1446|consen 158 ANGS---ELI-------KLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLS--TNASFIYLLDAFDGTVKSTF 225 (311)
T ss_pred ecCC---CeE-------EEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEE--eCCCcEEEEEccCCcEeeeE
Confidence 4211 122 3555544322 11222232 35678899999999999974 45668889887 55555555
Q ss_pred --CCcC---eeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC---CceEEEECCCCCEEEEEEcCCceeeC
Q 013871 235 --GSGP---YNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE---CSVTSEWSPDGRYFMTATTAPRLQID 306 (434)
Q Consensus 235 --~~~~---~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~---~~~~~~wspdg~~l~tas~~prl~~D 306 (434)
+... --...|+|||++++++. .+|+|.+|++++++.+..+.+. .+.++.|+|.-..+++|++
T Consensus 226 s~~~~~~~~~~~a~ftPds~Fvl~gs---~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s------- 295 (311)
T KOG1446|consen 226 SGYPNAGNLPLSATFTPDSKFVLSGS---DDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSASS------- 295 (311)
T ss_pred eeccCCCCcceeEEECCCCcEEEEec---CCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecCc-------
Confidence 2211 14689999999999887 6689999999999999998884 4445899998766666654
Q ss_pred CcEEEEeec
Q 013871 307 NGIKIFHHN 315 (434)
Q Consensus 307 ~~i~iw~~~ 315 (434)
.+-+|-.+
T Consensus 296 -~l~fw~p~ 303 (311)
T KOG1446|consen 296 -NLVFWLPD 303 (311)
T ss_pred -eEEEEecc
Confidence 56666543
No 36
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.90 E-value=1.9e-22 Score=188.64 Aligned_cols=276 Identities=16% Similarity=0.258 Sum_probs=187.9
Q ss_pred CcceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcE-EEEEeecC-cCCCCCCeeeecCCCcEEEEec-CCeEEEEeC
Q 013871 1 MLLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEA-VYQLFQKN-MTKTTWPSIRFSSDEAVACRMA-TNEIQFFDT 77 (434)
Q Consensus 1 ~V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~-~~~~~~~~-~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~ 77 (434)
+|.+|+|-|.|-.|+|++ .|..|++||...-.. .+.|.+-. .....+.+++||+.|..|+..+ ..+.+|+|-
T Consensus 169 ~Vsal~~Dp~GaR~~sGs-----~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DR 243 (641)
T KOG0772|consen 169 IVSALAVDPSGARFVSGS-----LDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDR 243 (641)
T ss_pred EEEEeeecCCCceeeecc-----ccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEcc
Confidence 589999999999999988 899999999864322 22232211 1124566899999887776664 459999997
Q ss_pred CCCCCcee------------eeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeeccccee
Q 013871 78 TDFPKGIL------------YRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTV 145 (434)
Q Consensus 78 ~~~~~~~~------------~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~ 145 (434)
..+..... .+.|+..+++-+|+|.....+.. .+.++++|||++.+. . .
T Consensus 244 dG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT-----~s~DgtlRiWdv~~~---k--~---------- 303 (641)
T KOG0772|consen 244 DGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLT-----CSYDGTLRIWDVNNT---K--S---------- 303 (641)
T ss_pred CCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEE-----ecCCCcEEEEecCCc---h--h----------
Confidence 66543221 22344456666666664333321 244566677766541 0 0
Q ss_pred EEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEe
Q 013871 146 QLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFN 225 (434)
Q Consensus 146 ~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d 225 (434)
.+-+ +...... .+.-++..++|+|||+.|| +|..||.|.+|+
T Consensus 304 ---------q~qV---------------------ik~k~~~------g~Rv~~tsC~~nrdg~~iA--agc~DGSIQ~W~ 345 (641)
T KOG0772|consen 304 ---------QLQV---------------------IKTKPAG------GKRVPVTSCAWNRDGKLIA--AGCLDGSIQIWD 345 (641)
T ss_pred ---------heeE---------------------EeeccCC------CcccCceeeecCCCcchhh--hcccCCceeeee
Confidence 0000 0000000 0134778999999999988 688999999999
Q ss_pred ccc---ce---eEEeCCc--CeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC-EEEEEeeC----CCceEEEECCCCC
Q 013871 226 KKC---RP---ILELGSG--PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG-KQLGTTRA----ECSVTSEWSPDGR 292 (434)
Q Consensus 226 ~~~---~~---~~~~~~~--~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~-~~i~~~~~----~~~~~~~wspdg~ 292 (434)
... ++ +.+.|.. .+++|.||+||++|++-|+|+ .+++||+++. +.+....+ ...+.|+||||.+
T Consensus 346 ~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~---tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~k 422 (641)
T KOG0772|consen 346 KGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDD---TLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDK 422 (641)
T ss_pred cCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCC---ceeeeeccccccchhhhcCCCccCCCCccccCCCce
Confidence 742 22 3344654 899999999999999998665 9999999876 44544433 2556699999999
Q ss_pred EEEEEEcCCceeeCCcEEEEeec-Cceeeeeecc--cceeeEEEcCCCCCCCC
Q 013871 293 YFMTATTAPRLQIDNGIKIFHHN-GSLFFKKMFD--KLFQAEWKPVSPDKFGD 342 (434)
Q Consensus 293 ~l~tas~~prl~~D~~i~iw~~~-g~~~~~~~~~--~~~~~~w~p~~~~~~~~ 342 (434)
.|+||++.|+-.-.+.+.+|+-. =..+++..+. .+-.+.|+|.-.-+|..
T Consensus 423 li~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~g 475 (641)
T KOG0772|consen 423 LILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAG 475 (641)
T ss_pred EEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeee
Confidence 99999999887667778888863 3456666554 57788999987766654
No 37
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.90 E-value=1.3e-22 Score=179.82 Aligned_cols=275 Identities=16% Similarity=0.196 Sum_probs=215.6
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeec-----CcCCCCCCeeeecCCCcEEEEec-CCeEEEE
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQK-----NMTKTTWPSIRFSSDEAVACRMA-TNEIQFF 75 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~-----~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~ 75 (434)
+-|..|||||+||++.+ -|+-|-|||.-+|+....+... -+....+.|+.||.|...+|+++ ||.|+||
T Consensus 216 ~EcA~FSPDgqyLvsgS-----vDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW 290 (508)
T KOG0275|consen 216 VECARFSPDGQYLVSGS-----VDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW 290 (508)
T ss_pred hhheeeCCCCceEeecc-----ccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence 45789999999999988 8999999999999764332211 11236678999999999999995 7899999
Q ss_pred eCCCCCCceee-eeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCC
Q 013871 76 DTTDFPKGILY-RLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGST 154 (434)
Q Consensus 76 ~~~~~~~~~~~-~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~ 154 (434)
.+......... +-|..+|.++.||.++...+. .+.+.+++|.-+.+ ++.+.....|...+....|.++|.
T Consensus 291 ri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS------~sfD~tvRiHGlKS---GK~LKEfrGHsSyvn~a~ft~dG~ 361 (508)
T KOG0275|consen 291 RIETGQCLRRFDRAHTKGVTCLSFSRDNSQILS------ASFDQTVRIHGLKS---GKCLKEFRGHSSYVNEATFTDDGH 361 (508)
T ss_pred EEecchHHHHhhhhhccCeeEEEEccCcchhhc------ccccceEEEecccc---chhHHHhcCccccccceEEcCCCC
Confidence 99886654333 366789999999999655443 46677899999988 788888888888888999999999
Q ss_pred eEEEEEEecccccCceeecceeEEEEeeCCcceeee---ecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccccee
Q 013871 155 GLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLV---PLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPI 231 (434)
Q Consensus 155 ~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v---~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~ 231 (434)
+|+.. ..|.+.+.|.+.++ +|.. ++..+.+|+++-.-|....-.++ +...+++.+.++.++.+
T Consensus 362 ~iisa---SsDgtvkvW~~Ktt----------eC~~Tfk~~~~d~~vnsv~~~PKnpeh~iV-CNrsntv~imn~qGQvV 427 (508)
T KOG0275|consen 362 HIISA---SSDGTVKVWHGKTT----------ECLSTFKPLGTDYPVNSVILLPKNPEHFIV-CNRSNTVYIMNMQGQVV 427 (508)
T ss_pred eEEEe---cCCccEEEecCcch----------hhhhhccCCCCcccceeEEEcCCCCceEEE-EcCCCeEEEEeccceEE
Confidence 97643 35677777765443 2222 23346789999888866544433 45567999999999999
Q ss_pred EEeC-----CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCcee
Q 013871 232 LELG-----SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQ 304 (434)
Q Consensus 232 ~~~~-----~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~prl~ 304 (434)
.+|. .+..-++..||.|.++.+.| .|+.++.|.+.+|++-.++.-| .++.++-+|..+.|++-+.
T Consensus 428 rsfsSGkREgGdFi~~~lSpkGewiYcig---ED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsE----- 499 (508)
T KOG0275|consen 428 RSFSSGKREGGDFINAILSPKGEWIYCIG---EDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSE----- 499 (508)
T ss_pred eeeccCCccCCceEEEEecCCCcEEEEEc---cCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcc-----
Confidence 9883 45566788999999999998 7789999999999877777655 7777999999999999999
Q ss_pred eCCcEEEEe
Q 013871 305 IDNGIKIFH 313 (434)
Q Consensus 305 ~D~~i~iw~ 313 (434)
|+.+++|.
T Consensus 500 -DgllKLWk 507 (508)
T KOG0275|consen 500 -DGLLKLWK 507 (508)
T ss_pred -cchhhhcC
Confidence 99999995
No 38
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.90 E-value=3.4e-21 Score=165.36 Aligned_cols=253 Identities=14% Similarity=0.194 Sum_probs=191.4
Q ss_pred CCcEEEEe-cCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeee
Q 013871 60 DEAVACRM-ATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRS 138 (434)
Q Consensus 60 d~~~la~~-~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~ 138 (434)
+.-+|+++ .|.+|++|...++......+.....|..+++.|+ +..+|. ..-..||+||+.+.+ ..++.+..
T Consensus 9 ~~viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpd-k~~LAa------a~~qhvRlyD~~S~n-p~Pv~t~e 80 (311)
T KOG0315|consen 9 DPVILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPD-KKDLAA------AGNQHVRLYDLNSNN-PNPVATFE 80 (311)
T ss_pred CceEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCC-cchhhh------ccCCeeEEEEccCCC-CCceeEEe
Confidence 34566766 4679999999886543334444557999999999 444442 233479999998865 44899999
Q ss_pred ecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCC
Q 013871 139 FFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMP 218 (434)
Q Consensus 139 ~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~ 218 (434)
.+...+..+.|..+|+++.. ...|.+.+ +|.+.. ..+.-.+....+|+++..+|+-.+|+ +|..+
T Consensus 81 ~h~kNVtaVgF~~dgrWMyT---gseDgt~k-------IWdlR~---~~~qR~~~~~spVn~vvlhpnQteLi--s~dqs 145 (311)
T KOG0315|consen 81 GHTKNVTAVGFQCDGRWMYT---GSEDGTVK-------IWDLRS---LSCQRNYQHNSPVNTVVLHPNQTELI--SGDQS 145 (311)
T ss_pred ccCCceEEEEEeecCeEEEe---cCCCceEE-------EEeccC---cccchhccCCCCcceEEecCCcceEE--eecCC
Confidence 99999999999999998533 33555554 455433 23333445578999999999998988 58899
Q ss_pred CeEEEEecccc-eeEEe---CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC------EEEEEeeCC--CceEEE
Q 013871 219 ASATIFNKKCR-PILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG------KQLGTTRAE--CSVTSE 286 (434)
Q Consensus 219 ~~v~l~d~~~~-~~~~~---~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~------~~i~~~~~~--~~~~~~ 286 (434)
+.|++||+..+ ...++ ...++.++...|||.+|+.+. ..|+.++|++-+. +.+.++++| .+..|.
T Consensus 146 g~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~n---nkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~ 222 (311)
T KOG0315|consen 146 GNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAAN---NKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCL 222 (311)
T ss_pred CcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEec---CCccEEEEEccCCCccccceEhhheecccceEEEEE
Confidence 99999999765 33333 356788999999999998876 6789999997643 456677777 556699
Q ss_pred ECCCCCEEEEEEcCCceeeCCcEEEEeecCceeeeeec----ccceeeEEEcCCCCCCCCch
Q 013871 287 WSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKKMF----DKLFQAEWKPVSPDKFGDIS 344 (434)
Q Consensus 287 wspdg~~l~tas~~prl~~D~~i~iw~~~g~~~~~~~~----~~~~~~~w~p~~~~~~~~~~ 344 (434)
+|||++||+|+++ |.+++||+.++-+..+... .=+|+.+|+-++.+|+.+..
T Consensus 223 lSPd~k~lat~ss------dktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTass 278 (311)
T KOG0315|consen 223 LSPDVKYLATCSS------DKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASS 278 (311)
T ss_pred ECCCCcEEEeecC------CceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCC
Confidence 9999999999999 9999999998873333222 24899999999999998853
No 39
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.89 E-value=4.4e-22 Score=195.23 Aligned_cols=236 Identities=13% Similarity=0.193 Sum_probs=189.2
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCC-------------------------------cEEEEEeecCcCCC
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETG-------------------------------EAVYQLFQKNMTKT 50 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g-------------------------------~~~~~~~~~~~~~~ 50 (434)
|.|..||+|++.||..- .|..|+||.+... ...+++.+ |..
T Consensus 381 v~ca~fSddssmlA~Gf-----~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~G---H~G 452 (707)
T KOG0263|consen 381 VTCAEFSDDSSMLACGF-----VDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYG---HSG 452 (707)
T ss_pred ceeEeecCCcchhhccc-----cccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeec---CCC
Confidence 68999999999888655 6788899987521 11223333 336
Q ss_pred CCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCC
Q 013871 51 TWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDL 129 (434)
Q Consensus 51 ~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~ 129 (434)
.|-...|+||.++|++++ |.++++|.+..+......+.|...|..+.|+|- +.++|. .+.+.+-++|....
T Consensus 453 PVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~-GyYFat-----as~D~tArLWs~d~-- 524 (707)
T KOG0263|consen 453 PVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPR-GYYFAT-----ASHDQTARLWSTDH-- 524 (707)
T ss_pred ceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCC-ceEEEe-----cCCCceeeeeeccc--
Confidence 666889999999999996 579999999998887888888889999999998 555553 35667889999988
Q ss_pred CCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCE
Q 013871 130 QSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSE 209 (434)
Q Consensus 130 ~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~ 209 (434)
..+++..-.|-+++-++.|+|+..+++. ...|++.+.|... .+...++-..+.++|.+++|||+|++
T Consensus 525 -~~PlRifaghlsDV~cv~FHPNs~Y~aT---GSsD~tVRlWDv~---------~G~~VRiF~GH~~~V~al~~Sp~Gr~ 591 (707)
T KOG0263|consen 525 -NKPLRIFAGHLSDVDCVSFHPNSNYVAT---GSSDRTVRLWDVS---------TGNSVRIFTGHKGPVTALAFSPCGRY 591 (707)
T ss_pred -CCchhhhcccccccceEEECCccccccc---CCCCceEEEEEcC---------CCcEEEEecCCCCceEEEEEcCCCce
Confidence 8888888899999999999999998543 4577887765432 22234444556899999999999999
Q ss_pred EEEEEccCCCeEEEEeccc-ceeEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC
Q 013871 210 FAVVYGFMPASATIFNKKC-RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG 271 (434)
Q Consensus 210 ~av~~g~~~~~v~l~d~~~-~~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~ 271 (434)
++ +|..++.|.+||+.. ..+.++ |++.+.++.||.+|..|+++|.|| +|.+||+..-
T Consensus 592 La--Sg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~Dn---sV~lWD~~~~ 651 (707)
T KOG0263|consen 592 LA--SGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADN---SVRLWDLTKV 651 (707)
T ss_pred Ee--ecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCC---eEEEEEchhh
Confidence 99 799999999999975 555555 789999999999999999999766 9999998754
No 40
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=3.8e-21 Score=163.86 Aligned_cols=268 Identities=16% Similarity=0.180 Sum_probs=199.9
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCC
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDF 80 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~ 80 (434)
|+++.|.-||+|.+|++ .|++|++|+...|.+++++.++. ..+..++-+.|+..||++ +|..|.+||+++.
T Consensus 20 V~avryN~dGnY~ltcG-----sdrtvrLWNp~rg~liktYsghG---~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TG 91 (307)
T KOG0316|consen 20 VRAVRYNVDGNYCLTCG-----SDRTVRLWNPLRGALIKTYSGHG---HEVLDAALSSDNSKFASCGGDKAVQVWDVNTG 91 (307)
T ss_pred eEEEEEccCCCEEEEcC-----CCceEEeecccccceeeeecCCC---ceeeeccccccccccccCCCCceEEEEEcccC
Confidence 78999999999999999 89999999999999999998865 566677888888777766 5679999999997
Q ss_pred CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEE
Q 013871 81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVA 160 (434)
Q Consensus 81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~ 160 (434)
......+.|...|..+.|.-. ...++ +++.+..+++|+..+.+ .+|+..+.-.+..+.++..+. +.++..
T Consensus 92 kv~Rr~rgH~aqVNtV~fNee-sSVv~-----SgsfD~s~r~wDCRS~s-~ePiQildea~D~V~Si~v~~---heIvaG 161 (307)
T KOG0316|consen 92 KVDRRFRGHLAQVNTVRFNEE-SSVVA-----SGSFDSSVRLWDCRSRS-FEPIQILDEAKDGVSSIDVAE---HEIVAG 161 (307)
T ss_pred eeeeecccccceeeEEEecCc-ceEEE-----eccccceeEEEEcccCC-CCccchhhhhcCceeEEEecc---cEEEee
Confidence 766666778888999998865 33333 46778899999998754 567777766776666665543 233322
Q ss_pred EecccccCceeecceeEEEEeeCCcceeeeecC-CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccccee-EEe--C-
Q 013871 161 QSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR-KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPI-LEL--G- 235 (434)
Q Consensus 161 ~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~-~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~-~~~--~- 235 (434)
.+|.+.+. |.+.... ...+ -..||+++.||+||+... .+.+++.+++.|..+..+ ..+ |
T Consensus 162 --S~DGtvRt-------ydiR~G~-----l~sDy~g~pit~vs~s~d~nc~L--a~~l~stlrLlDk~tGklL~sYkGhk 225 (307)
T KOG0316|consen 162 --SVDGTVRT-------YDIRKGT-----LSSDYFGHPITSVSFSKDGNCSL--ASSLDSTLRLLDKETGKLLKSYKGHK 225 (307)
T ss_pred --ccCCcEEE-------EEeecce-----eehhhcCCcceeEEecCCCCEEE--EeeccceeeecccchhHHHHHhcccc
Confidence 24555443 3332111 1111 156999999999998777 489999999999875443 332 2
Q ss_pred -CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCC---ceEEEECCCCCEEEEEEcCCceeeCCcEEE
Q 013871 236 -SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAEC---SVTSEWSPDGRYFMTATTAPRLQIDNGIKI 311 (434)
Q Consensus 236 -~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~---~~~~~wspdg~~l~tas~~prl~~D~~i~i 311 (434)
......++++....+++.|+ .||.|+|||+.+...+..+..+. +..+++.|.-.-|++|+ +..+..
T Consensus 226 n~eykldc~l~qsdthV~sgS---EDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~-------~~~~~~ 295 (307)
T KOG0316|consen 226 NMEYKLDCCLNQSDTHVFSGS---EDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITAT-------GHGDLF 295 (307)
T ss_pred cceeeeeeeecccceeEEecc---CCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEec-------CCceec
Confidence 23345677887778888777 78999999999999999998873 44599999999999988 566666
Q ss_pred Ee
Q 013871 312 FH 313 (434)
Q Consensus 312 w~ 313 (434)
|-
T Consensus 296 ~~ 297 (307)
T KOG0316|consen 296 WY 297 (307)
T ss_pred ee
Confidence 64
No 41
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.89 E-value=1.6e-19 Score=170.39 Aligned_cols=282 Identities=12% Similarity=0.077 Sum_probs=182.5
Q ss_pred cEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEE-Ee-cCCeEEEEeCCCCCCceeeeee
Q 013871 12 LIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVAC-RM-ATNEIQFFDTTDFPKGILYRLR 89 (434)
Q Consensus 12 ~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la-~~-~~~~i~v~~~~~~~~~~~~~~~ 89 (434)
+.+++.+ .|+.|.+||+.+++.+..+... ..+..+.|+||+++++ ++ .++.|.+||....... ..+.
T Consensus 2 ~~~~s~~-----~d~~v~~~d~~t~~~~~~~~~~----~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~--~~~~ 70 (300)
T TIGR03866 2 KAYVSNE-----KDNTISVIDTATLEVTRTFPVG----QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVI--GTLP 70 (300)
T ss_pred cEEEEec-----CCCEEEEEECCCCceEEEEECC----CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEE--Eecc
Confidence 4566666 7899999999999988887653 2344799999998764 44 4579999998764421 2222
Q ss_pred -cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccC
Q 013871 90 -VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTN 168 (434)
Q Consensus 90 -~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~ 168 (434)
...+..+.|+|++ ..+.+. ....+.+.+|++.+ .+.+..... ......+.|+|+|..+++... +..
T Consensus 71 ~~~~~~~~~~~~~g-~~l~~~----~~~~~~l~~~d~~~---~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~---~~~- 137 (300)
T TIGR03866 71 SGPDPELFALHPNG-KILYIA----NEDDNLVTVIDIET---RKVLAEIPV-GVEPEGMAVSPDGKIVVNTSE---TTN- 137 (300)
T ss_pred CCCCccEEEECCCC-CEEEEE----cCCCCeEEEEECCC---CeEEeEeeC-CCCcceEEECCCCCEEEEEec---CCC-
Confidence 2346678899985 444322 13346899999976 454444332 233467899999998765421 111
Q ss_pred ceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccce-eEEe--CC-----c--C
Q 013871 169 QSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP-ILEL--GS-----G--P 238 (434)
Q Consensus 169 ~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~-~~~~--~~-----~--~ 238 (434)
.++.++.... .....+........++|+|+|+.+++ .+..++.+.+||++... +..+ +. . .
T Consensus 138 -------~~~~~d~~~~-~~~~~~~~~~~~~~~~~s~dg~~l~~-~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~ 208 (300)
T TIGR03866 138 -------MAHFIDTKTY-EIVDNVLVDQRPRFAEFTADGKELWV-SSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQ 208 (300)
T ss_pred -------eEEEEeCCCC-eEEEEEEcCCCccEEEECCCCCEEEE-EcCCCCEEEEEEcCcceeeeeeeecccccccccCC
Confidence 1222333222 11111111334577999999998875 45567899999997543 2322 11 1 1
Q ss_pred eeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEee-CCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc
Q 013871 239 YNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTR-AECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS 317 (434)
Q Consensus 239 ~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~-~~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~ 317 (434)
...+.|+|+|++++++..+ ++.|.+||+++++.+.... ++.+..++|+|||++|+++... ++.|+|||..+.
T Consensus 209 ~~~i~~s~dg~~~~~~~~~--~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~-----~~~i~v~d~~~~ 281 (300)
T TIGR03866 209 PVGIKLTKDGKTAFVALGP--ANRVAVVDAKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGV-----SNDVSVIDVAAL 281 (300)
T ss_pred ccceEECCCCCEEEEEcCC--CCeEEEEECCCCcEEEEEEeCCCcceEEECCCCCEEEEEcCC-----CCeEEEEECCCC
Confidence 2358899999987665433 2579999999988776543 4467779999999999887542 899999999654
Q ss_pred -eeeeeec-ccceeeEEE
Q 013871 318 -LFFKKMF-DKLFQAEWK 333 (434)
Q Consensus 318 -~~~~~~~-~~~~~~~w~ 333 (434)
++..... .+.+.++.+
T Consensus 282 ~~~~~~~~~~~~~~~~~~ 299 (300)
T TIGR03866 282 KVIKSIKVGRLPWGVVVR 299 (300)
T ss_pred cEEEEEEcccccceeEeC
Confidence 3444333 234555544
No 42
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.89 E-value=3.6e-20 Score=171.61 Aligned_cols=261 Identities=17% Similarity=0.237 Sum_probs=191.0
Q ss_pred CCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCC
Q 013871 49 KTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGK 127 (434)
Q Consensus 49 ~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~ 127 (434)
...+.++.|+|++++++++. ++.|.+|+............+...+..+.|+|++ ..+++ .+..+.+.+|++..
T Consensus 9 ~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~-----~~~~~~i~i~~~~~ 82 (289)
T cd00200 9 TGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADG-TYLAS-----GSSDKTIRLWDLET 82 (289)
T ss_pred CCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCC-CEEEE-----EcCCCeEEEEEcCc
Confidence 36777999999999999886 7899999998755433444455667899999984 44443 23467999999987
Q ss_pred CCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeec-CCCCCeEEEEECcC
Q 013871 128 DLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL-RKEGPVHDVQWSYS 206 (434)
Q Consensus 128 ~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l-~~~~~i~~v~wspd 206 (434)
.+.+.....+...+..+.|++++..++... .|. .+..++.... .....+ .+...|.+++|+|+
T Consensus 83 ---~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~---~~~---------~i~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~ 146 (289)
T cd00200 83 ---GECVRTLTGHTSYVSSVAFSPDGRILSSSS---RDK---------TIKVWDVETG-KCLTTLRGHTDWVNSVAFSPD 146 (289)
T ss_pred ---ccceEEEeccCCcEEEEEEcCCCCEEEEec---CCC---------eEEEEECCCc-EEEEEeccCCCcEEEEEEcCc
Confidence 566666667777889999999976554321 121 2333333322 122222 34678999999999
Q ss_pred CCEEEEEEccCCCeEEEEecc-cceeEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--C
Q 013871 207 GSEFAVVYGFMPASATIFNKK-CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--C 281 (434)
Q Consensus 207 g~~~av~~g~~~~~v~l~d~~-~~~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~ 281 (434)
+..++ ++..++.+.+||++ ...+..+ +...+.++.|+|+++.+++++ .+|.|.+||+.+++.+..+..+ .
T Consensus 147 ~~~l~--~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~~~~i~i~d~~~~~~~~~~~~~~~~ 221 (289)
T cd00200 147 GTFVA--SSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSS---SDGTIKLWDLSTGKCLGTLRGHENG 221 (289)
T ss_pred CCEEE--EEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEec---CCCcEEEEECCCCceecchhhcCCc
Confidence 77666 35568899999996 3333333 567899999999999998888 4579999999988888877444 5
Q ss_pred ceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec-Cceeeee--ecccceeeEEEcCCCCCCCC
Q 013871 282 SVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLFFKK--MFDKLFQAEWKPVSPDKFGD 342 (434)
Q Consensus 282 ~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~-g~~~~~~--~~~~~~~~~w~p~~~~~~~~ 342 (434)
+..+.|+|++.++++++. |+.|++|++. ++.+... +...+..+.|.|.+..++..
T Consensus 222 i~~~~~~~~~~~~~~~~~------~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 279 (289)
T cd00200 222 VNSVAFSPDGYLLASGSE------DGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASG 279 (289)
T ss_pred eEEEEEcCCCcEEEEEcC------CCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEe
Confidence 666999999999999887 9999999996 4544443 33568999999987666654
No 43
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=8.3e-22 Score=194.80 Aligned_cols=233 Identities=10% Similarity=0.188 Sum_probs=174.3
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCc--------------------------------------------
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGE-------------------------------------------- 37 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~-------------------------------------------- 37 (434)
|++|.|||||+||||++ +|+.|+||.+..-+
T Consensus 270 Iw~mKFS~DGKyLAsaG-----eD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 270 IWAMKFSHDGKYLASAG-----EDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred EEEEEeCCCCceeeecC-----CCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 89999999999999999 99999999886500
Q ss_pred ----------------EEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCC
Q 013871 38 ----------------AVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKA 101 (434)
Q Consensus 38 ----------------~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~ 101 (434)
+++.|.+ |...+..+.||.++-+|-+..|.+|++|.+.....+ ..-.|.+-|++++|+|-
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~G---Ht~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL-~~F~HndfVTcVaFnPv 420 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKG---HTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECL-KVFSHNDFVTCVAFNPV 420 (712)
T ss_pred CccccCCCccccccccchhhhhc---cchhheecccccCCeeEeccccccEEeecCCCccee-eEEecCCeeEEEEeccc
Confidence 0011111 446677899999888888889999999999865442 23456778999999998
Q ss_pred CCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEe
Q 013871 102 PGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLT 181 (434)
Q Consensus 102 ~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~ 181 (434)
++.++. ++..++.||||+++.. +. +.|+. |
T Consensus 421 DDryFi-----SGSLD~KvRiWsI~d~---~V-------------v~W~D-------------------------l---- 450 (712)
T KOG0283|consen 421 DDRYFI-----SGSLDGKVRLWSISDK---KV-------------VDWND-------------------------L---- 450 (712)
T ss_pred CCCcEe-----ecccccceEEeecCcC---ee-------------Eeehh-------------------------h----
Confidence 776655 4678899999999761 10 11110 0
Q ss_pred eCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeEE-e----C------CcCeeEEEECCCCC-
Q 013871 182 TDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILE-L----G------SGPYNTVRWNPKGK- 249 (434)
Q Consensus 182 ~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~-~----~------~~~~~~i~~SP~g~- 249 (434)
..-|.+++|+|||+..+| |...|.+++|+..+..+.. + + ...|+.+.|.|...
T Consensus 451 -------------~~lITAvcy~PdGk~avI--Gt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~ 515 (712)
T KOG0283|consen 451 -------------RDLITAVCYSPDGKGAVI--GTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPD 515 (712)
T ss_pred -------------hhhheeEEeccCCceEEE--EEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCC
Confidence 346789999999877764 8889999999987554332 1 1 23688999988543
Q ss_pred eEEEEecCCCCCeEEEEEccCCEEEEEeeCC----CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc
Q 013871 250 FLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE----CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS 317 (434)
Q Consensus 250 ~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~----~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~ 317 (434)
-|++.+ .|..|+|+|.++.+++..+.+. .-+.-.|+.||+||++++. |..|+||++...
T Consensus 516 ~vLVTS---nDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~se------Ds~VYiW~~~~~ 578 (712)
T KOG0283|consen 516 EVLVTS---NDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASE------DSWVYIWKNDSF 578 (712)
T ss_pred eEEEec---CCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeec------CceEEEEeCCCC
Confidence 455566 3459999999988888888865 2234799999999999998 999999998544
No 44
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.89 E-value=4.7e-21 Score=165.61 Aligned_cols=260 Identities=14% Similarity=0.223 Sum_probs=189.4
Q ss_pred CCCCeeeecCCCcEEEEe-cCCeEEEEeCCCCCC--ceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcC
Q 013871 50 TTWPSIRFSSDEAVACRM-ATNEIQFFDTTDFPK--GILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACG 126 (434)
Q Consensus 50 ~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~~~--~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~ 126 (434)
..+.+++|+.||..|+++ .+.++.+|++..... ....+.+...|..+.|+|.....++... .+..|++|++.
T Consensus 21 ~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas-----~dk~ir~wd~r 95 (313)
T KOG1407|consen 21 QKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATAS-----GDKTIRIWDIR 95 (313)
T ss_pred hcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEec-----CCceEEEEEec
Confidence 566789999999999998 578999999875422 2234455667888999998766666543 34589999998
Q ss_pred CCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcC
Q 013871 127 KDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYS 206 (434)
Q Consensus 127 ~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspd 206 (434)
. ++++..... +.+...+.|+|+|+++++.- +.. .|-.++.... ......+....++.+.|+-+
T Consensus 96 ~---~k~~~~i~~-~~eni~i~wsp~g~~~~~~~-----kdD-------~it~id~r~~-~~~~~~~~~~e~ne~~w~~~ 158 (313)
T KOG1407|consen 96 S---GKCTARIET-KGENINITWSPDGEYIAVGN-----KDD-------RITFIDARTY-KIVNEEQFKFEVNEISWNNS 158 (313)
T ss_pred c---CcEEEEeec-cCcceEEEEcCCCCEEEEec-----Ccc-------cEEEEEeccc-ceeehhcccceeeeeeecCC
Confidence 8 677766554 44667899999999988742 211 1344443322 11122222567889999977
Q ss_pred CCEEEEEEccCCCeEEEEec-ccceeEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--C
Q 013871 207 GSEFAVVYGFMPASATIFNK-KCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--C 281 (434)
Q Consensus 207 g~~~av~~g~~~~~v~l~d~-~~~~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~ 281 (434)
+..|++..| .|.|.|..- .-+++.++ |.....||.|+|+|+++|+|+.| ..+.+||++..-++..+.-. .
T Consensus 159 nd~Fflt~G--lG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsAD---AlvSLWD~~ELiC~R~isRldwp 233 (313)
T KOG1407|consen 159 NDLFFLTNG--LGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSAD---ALVSLWDVDELICERCISRLDWP 233 (313)
T ss_pred CCEEEEecC--CceEEEEeccccccccccccCCcceEEEEECCCCceEeecccc---ceeeccChhHhhhheeeccccCc
Confidence 777776444 467777654 34555555 66666778999999999999944 59999999988777776554 5
Q ss_pred ceEEEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceeeeeec-ccceeeEEEcCCCCCCCC
Q 013871 282 SVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKKMF-DKLFQAEWKPVSPDKFGD 342 (434)
Q Consensus 282 ~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~-~g~~~~~~~~-~~~~~~~w~p~~~~~~~~ 342 (434)
+-.++||-||++|++|+. |.-|-|=.+ +|..+.+.+. .+.+.|+|+|..+.|..+
T Consensus 234 VRTlSFS~dg~~lASaSE------Dh~IDIA~vetGd~~~eI~~~~~t~tVAWHPk~~LLAyA 290 (313)
T KOG1407|consen 234 VRTLSFSHDGRMLASASE------DHFIDIAEVETGDRVWEIPCEGPTFTVAWHPKRPLLAYA 290 (313)
T ss_pred eEEEEeccCcceeeccCc------cceEEeEecccCCeEEEeeccCCceeEEecCCCceeeEE
Confidence 556999999999999999 999988777 7888877755 589999999997655443
No 45
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.89 E-value=5.3e-21 Score=171.80 Aligned_cols=274 Identities=14% Similarity=0.182 Sum_probs=210.3
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF 80 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~ 80 (434)
|+|+++-|-..+++|.+ .|++++|||+.+|+...++.++- ..++.+++|+---|+.++. |++|+.||+...
T Consensus 154 Vr~vavdP~n~wf~tgs-----~DrtikIwDlatg~LkltltGhi---~~vr~vavS~rHpYlFs~gedk~VKCwDLe~n 225 (460)
T KOG0285|consen 154 VRSVAVDPGNEWFATGS-----ADRTIKIWDLATGQLKLTLTGHI---ETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYN 225 (460)
T ss_pred EEEEeeCCCceeEEecC-----CCceeEEEEcccCeEEEeecchh---heeeeeeecccCceEEEecCCCeeEEEechhh
Confidence 78999999999999988 89999999999999988887653 6788899999999988875 579999999876
Q ss_pred CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEE
Q 013871 81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVA 160 (434)
Q Consensus 81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~ 160 (434)
........|+.+|.+++++|..+ .|+ +++.+..+++||+.+ ...+..+..|+..+.++..+|-.-.++.
T Consensus 226 kvIR~YhGHlS~V~~L~lhPTld-vl~-----t~grDst~RvWDiRt---r~~V~~l~GH~~~V~~V~~~~~dpqvit-- 294 (460)
T KOG0285|consen 226 KVIRHYHGHLSGVYCLDLHPTLD-VLV-----TGGRDSTIRVWDIRT---RASVHVLSGHTNPVASVMCQPTDPQVIT-- 294 (460)
T ss_pred hhHHHhccccceeEEEeccccce-eEE-----ecCCcceEEEeeecc---cceEEEecCCCCcceeEEeecCCCceEE--
Confidence 65556778899999999999833 333 457788999999998 8899999999999999999886555432
Q ss_pred EecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-cceeEEe--CCc
Q 013871 161 QSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL--GSG 237 (434)
Q Consensus 161 ~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~-~~~~~~~--~~~ 237 (434)
...|.+.+ ||.+. .+........++..|.+++.+|....|| +++ +..+.-|++- +.-+..+ |+.
T Consensus 295 -~S~D~tvr-------lWDl~--agkt~~tlt~hkksvral~lhP~e~~fA--Sas-~dnik~w~~p~g~f~~nlsgh~~ 361 (460)
T KOG0285|consen 295 -GSHDSTVR-------LWDLR--AGKTMITLTHHKKSVRALCLHPKENLFA--SAS-PDNIKQWKLPEGEFLQNLSGHNA 361 (460)
T ss_pred -ecCCceEE-------Eeeec--cCceeEeeecccceeeEEecCCchhhhh--ccC-CccceeccCCccchhhccccccc
Confidence 23555555 34332 2222233334577899999999988888 444 4488889883 4444433 788
Q ss_pred CeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEe---eC-------CCceEEEECCCCCEEEEEEcCCceeeCC
Q 013871 238 PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTT---RA-------ECSVTSEWSPDGRYFMTATTAPRLQIDN 307 (434)
Q Consensus 238 ~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~---~~-------~~~~~~~wspdg~~l~tas~~prl~~D~ 307 (434)
.+|++..+.||-++ +|+ .+|.|.+||.+++-..... .. ..+...+|.-.|..|+||.. |.
T Consensus 362 iintl~~nsD~v~~-~G~---dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~ea------dK 431 (460)
T KOG0285|consen 362 IINTLSVNSDGVLV-SGG---DNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEA------DK 431 (460)
T ss_pred eeeeeeeccCceEE-EcC---CceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccC------Cc
Confidence 89999999887554 444 4589999999987333222 21 14566899999999999999 99
Q ss_pred cEEEEeecCc
Q 013871 308 GIKIFHHNGS 317 (434)
Q Consensus 308 ~i~iw~~~g~ 317 (434)
+|++|.-+..
T Consensus 432 tIk~~keDe~ 441 (460)
T KOG0285|consen 432 TIKMYKEDEH 441 (460)
T ss_pred ceEEEecccc
Confidence 9999986544
No 46
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.88 E-value=4.6e-21 Score=194.15 Aligned_cols=288 Identities=16% Similarity=0.241 Sum_probs=198.7
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCC------------cEEEEEeecCcCCCCCCeeeecCCCcEEEEecC
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETG------------EAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT 69 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g------------~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~ 69 (434)
|.+++.||||..++|++.- .|+.++||+...- +.+.+. ..|...+.|+.||+||+|||+++|
T Consensus 16 IfSIdv~pdg~~~aTgGq~---~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m---~~h~~sv~CVR~S~dG~~lAsGSD 89 (942)
T KOG0973|consen 16 IFSIDVHPDGVKFATGGQV---LDGGIVIWSQDPVLDEKEEKNENLPKHLCTM---DDHDGSVNCVRFSPDGSYLASGSD 89 (942)
T ss_pred EEEEEecCCceeEecCCcc---ccccceeeccccccchhhhhhcccchhheee---ccccCceeEEEECCCCCeEeeccC
Confidence 5689999999999998732 4667779986321 112222 224578889999999999999987
Q ss_pred C-eEEEEeCCC------CCC------------ceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCC
Q 013871 70 N-EIQFFDTTD------FPK------------GILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQ 130 (434)
Q Consensus 70 ~-~i~v~~~~~------~~~------------~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~ 130 (434)
+ -|.||+-.. +.. ......|...|.++.|+|+ +.+++ +.+.+.+|-||+..+
T Consensus 90 D~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~-~~~lv-----S~s~DnsViiwn~~t--- 160 (942)
T KOG0973|consen 90 DRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPD-DSLLV-----SVSLDNSVIIWNAKT--- 160 (942)
T ss_pred cceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCC-ccEEE-----EecccceEEEEcccc---
Confidence 5 789998762 110 1112335567999999997 55555 357788999999988
Q ss_pred CCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceee-cceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCE
Q 013871 131 SQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYY-GESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSE 209 (434)
Q Consensus 131 ~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~-g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~ 209 (434)
...+.....|..-+..+.|.|-|++++ +...|++.+.|- .+.++... +.+-++ .. .....+..+.|||||.+
T Consensus 161 F~~~~vl~~H~s~VKGvs~DP~Gky~A---SqsdDrtikvwrt~dw~i~k~-It~pf~-~~--~~~T~f~RlSWSPDG~~ 233 (942)
T KOG0973|consen 161 FELLKVLRGHQSLVKGVSWDPIGKYFA---SQSDDRTLKVWRTSDWGIEKS-ITKPFE-ES--PLTTFFLRLSWSPDGHH 233 (942)
T ss_pred ceeeeeeecccccccceEECCccCeee---eecCCceEEEEEcccceeeEe-eccchh-hC--CCcceeeecccCCCcCe
Confidence 577788888888899999999999964 445788888664 21111111 011100 00 11345678999999999
Q ss_pred EEEEEccCCC--eEEEEeccc---ceeEEeCCcCeeEEEECCC-------------C-CeEEEEecCCCCCeEEEEEccC
Q 013871 210 FAVVYGFMPA--SATIFNKKC---RPILELGSGPYNTVRWNPK-------------G-KFLCLAGFGNLPGDMAFWDYVD 270 (434)
Q Consensus 210 ~av~~g~~~~--~v~l~d~~~---~~~~~~~~~~~~~i~~SP~-------------g-~~l~~~~~~~~~g~i~iwd~~~ 270 (434)
|++..+...+ .+.|.+-.+ ..-.--|.+++.+++|+|. + .+.+++..|..|+.|.||....
T Consensus 234 las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~ 313 (942)
T KOG0973|consen 234 LASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTAL 313 (942)
T ss_pred ecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCC
Confidence 9976443322 677776532 2222238899999999981 1 1222222233678999999877
Q ss_pred CEEEEEe---eCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc
Q 013871 271 GKQLGTT---RAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS 317 (434)
Q Consensus 271 ~~~i~~~---~~~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~ 317 (434)
.+.+... -...+++++|||||..|+.++. |++|.+.+++.+
T Consensus 314 ~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~------DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 314 PRPLFVIHNLFNKSIVDMSWSPDGFSLFACSL------DGTVALIHFEEK 357 (942)
T ss_pred CCchhhhhhhhcCceeeeeEcCCCCeEEEEec------CCeEEEEEcchH
Confidence 6655443 3457888999999999999999 999999999654
No 47
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=7.1e-21 Score=173.87 Aligned_cols=272 Identities=15% Similarity=0.224 Sum_probs=190.4
Q ss_pred CCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCC---ceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEc
Q 013871 50 TTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPK---GILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYAC 125 (434)
Q Consensus 50 ~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~---~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~ 125 (434)
+.| .++||++|+|||+++ |.+..+|++..... ......|...|..+.||||....+++ +....+.+|++
T Consensus 226 EVW-fl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaC------g~~e~~~lwDv 298 (519)
T KOG0293|consen 226 EVW-FLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLAC------GFDEVLSLWDV 298 (519)
T ss_pred cEE-EEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEec------CchHheeeccC
Confidence 567 899999999999996 55889998755332 22333456789999999996566665 44446899999
Q ss_pred CCCCCCCceeeee-ecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEEC
Q 013871 126 GKDLQSQPLARRS-FFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWS 204 (434)
Q Consensus 126 ~~~~~~~~i~~~~-~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~ws 204 (434)
.+ +....... .+.....+..|.|||..+++. + .|. .++.++.+|.....-.-...-.|++++.+
T Consensus 299 ~t---gd~~~~y~~~~~~S~~sc~W~pDg~~~V~G-s--~dr---------~i~~wdlDgn~~~~W~gvr~~~v~dlait 363 (519)
T KOG0293|consen 299 DT---GDLRHLYPSGLGFSVSSCAWCPDGFRFVTG-S--PDR---------TIIMWDLDGNILGNWEGVRDPKVHDLAIT 363 (519)
T ss_pred Cc---chhhhhcccCcCCCcceeEEccCCceeEec-C--CCC---------cEEEecCCcchhhcccccccceeEEEEEc
Confidence 87 33322211 123456788999999996542 1 232 23444444432110000013468999999
Q ss_pred cCCCEEEEEEccCCCeEEEEecccceeEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--
Q 013871 205 YSGSEFAVVYGFMPASATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-- 280 (434)
Q Consensus 205 pdg~~~av~~g~~~~~v~l~d~~~~~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-- 280 (434)
+||+.+..+. .|..+.+|+.....-..+ ...+++++..|.||+++++.-. +..|.+||++..+.+..+.+|
T Consensus 364 ~Dgk~vl~v~--~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~---~qei~LWDl~e~~lv~kY~Ghkq 438 (519)
T KOG0293|consen 364 YDGKYVLLVT--VDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQ---DQEIHLWDLEENKLVRKYFGHKQ 438 (519)
T ss_pred CCCcEEEEEe--cccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcc---cCeeEEeecchhhHHHHhhcccc
Confidence 9999998753 578999999864432212 5788999999999999988763 458999999988888877776
Q ss_pred --CceEEEEC-CCCCEEEEEEcCCceeeCCcEEEEee-cCceeeee--ecccceeeEEEcCCCCCCCCchhhhhccCccc
Q 013871 281 --CSVTSEWS-PDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKK--MFDKLFQAEWKPVSPDKFGDISELIKSVGSLK 354 (434)
Q Consensus 281 --~~~~~~ws-pdg~~l~tas~~prl~~D~~i~iw~~-~g~~~~~~--~~~~~~~~~w~p~~~~~~~~~~~~~~~~~~~~ 354 (434)
.++.-+|- -+..++++|+. |+.|+|||. +|+++... +...+.+|+|+|..+..|.... +...++
T Consensus 439 ~~fiIrSCFgg~~~~fiaSGSE------D~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASas----DDgtIR 508 (519)
T KOG0293|consen 439 GHFIIRSCFGGGNDKFIASGSE------DSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASAS----DDGTIR 508 (519)
T ss_pred cceEEEeccCCCCcceEEecCC------CceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccC----CCCeEE
Confidence 33444554 35589999999 999999998 67776654 5668999999999999887642 223356
Q ss_pred cccc
Q 013871 355 VAET 358 (434)
Q Consensus 355 ~~~~ 358 (434)
|+.+
T Consensus 509 IWg~ 512 (519)
T KOG0293|consen 509 IWGP 512 (519)
T ss_pred EecC
Confidence 6665
No 48
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.87 E-value=1.3e-21 Score=178.39 Aligned_cols=262 Identities=13% Similarity=0.148 Sum_probs=196.8
Q ss_pred CCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCC
Q 013871 49 KTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGK 127 (434)
Q Consensus 49 ~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~ 127 (434)
+..+..++|+|+|+.|++++ .|++.+|+...+.-....+-|...|+.+.||+++...| ++...+.|++|+...
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmi------SgD~gG~iKyWqpnm 169 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMI------SGDKGGMIKYWQPNM 169 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEE------EcCCCceEEecccch
Confidence 36677899999999999985 58999999977665455666777899999999964444 356678999999754
Q ss_pred CCCCCceeeeeec-ccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcC
Q 013871 128 DLQSQPLARRSFF-RCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYS 206 (434)
Q Consensus 128 ~~~~~~i~~~~~~-~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspd 206 (434)
..+.....+ ...+..++++|.....+. ...|.+.+.|. . ....+.++.-.+.-.|.+++|+|.
T Consensus 170 ----nnVk~~~ahh~eaIRdlafSpnDskF~t---~SdDg~ikiWd-------f--~~~kee~vL~GHgwdVksvdWHP~ 233 (464)
T KOG0284|consen 170 ----NNVKIIQAHHAEAIRDLAFSPNDSKFLT---CSDDGTIKIWD-------F--RMPKEERVLRGHGWDVKSVDWHPT 233 (464)
T ss_pred ----hhhHHhhHhhhhhhheeccCCCCceeEE---ecCCCeEEEEe-------c--cCCchhheeccCCCCcceeccCCc
Confidence 223323333 477889999997665433 22455555332 2 222233444456778999999998
Q ss_pred CCEEEEEEccCCCeEEEEecc-cceeEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--C
Q 013871 207 GSEFAVVYGFMPASATIFNKK-CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--C 281 (434)
Q Consensus 207 g~~~av~~g~~~~~v~l~d~~-~~~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~ 281 (434)
-..++ +|+.|..|++||.+ +..+.++ |+..|..+.|+|+|.+|++++.|. .++++|+++.+.+.++++| .
T Consensus 234 kgLia--sgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~---~~kv~DiR~mkEl~~~r~Hkkd 308 (464)
T KOG0284|consen 234 KGLIA--SGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQ---SCKVFDIRTMKELFTYRGHKKD 308 (464)
T ss_pred cceeE--EccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCc---eEEEEehhHhHHHHHhhcchhh
Confidence 88888 68888899999997 4556666 688899999999999999999655 9999999999999999887 7
Q ss_pred ceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc-eeee---eecccceeeEEEcCCCCCCCC
Q 013871 282 SVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS-LFFK---KMFDKLFQAEWKPVSPDKFGD 342 (434)
Q Consensus 282 ~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~-~~~~---~~~~~~~~~~w~p~~~~~~~~ 342 (434)
++++.|+|-..-|++.+.. |+.|..|.+..+ .+-. .+..++|.++|+|.+-.|...
T Consensus 309 v~~~~WhP~~~~lftsgg~-----Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tg 368 (464)
T KOG0284|consen 309 VTSLTWHPLNESLFTSGGS-----DGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATG 368 (464)
T ss_pred heeeccccccccceeeccC-----CCceEEEeccccccccCCCcccccceeeeeccccceeEeec
Confidence 8889999987766655444 999999999743 2322 345689999999988666554
No 49
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.87 E-value=5.7e-20 Score=178.94 Aligned_cols=290 Identities=13% Similarity=0.134 Sum_probs=218.7
Q ss_pred CCCcEEEEEcCCCcEEEEEeecCcCCCCCCeee-ecCCCcEEEEecC-CeEEEEeCCCCCCceeeeeecCCeeEEEEeCC
Q 013871 24 QEKNVILWKTETGEAVYQLFQKNMTKTTWPSIR-FSSDEAVACRMAT-NEIQFFDTTDFPKGILYRLRVPGVAAFEVSKA 101 (434)
Q Consensus 24 ~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~-~S~d~~~la~~~~-~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~ 101 (434)
.|.++.++|..+++.+.++.+.+ +.+..++ |.|+++++|.+.+ .++++|+..+... .....|.+.|.++....+
T Consensus 301 aeQnl~l~d~~~l~i~k~ivG~n---dEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c-~ii~GH~e~vlSL~~~~~ 376 (775)
T KOG0319|consen 301 AEQNLFLYDEDELTIVKQIVGYN---DEILDMKFLGPEESHLAVATNSPELRLYTLPTSYC-QIIPGHTEAVLSLDVWSS 376 (775)
T ss_pred ccceEEEEEccccEEehhhcCCc---hhheeeeecCCccceEEEEeCCCceEEEecCCCce-EEEeCchhheeeeeeccc
Confidence 57999999999999988887765 3444555 5678899998865 6999999888765 466777888888874333
Q ss_pred CCCeEEEEecCCCCCCceEEEEEcCCCC-CCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEE
Q 013871 102 PGSHVAVFVPESKGSPASVQIYACGKDL-QSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYL 180 (434)
Q Consensus 102 ~~~~ia~~~~~~~~~~~~v~i~~~~~~~-~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l 180 (434)
+..++ +.+.+..+++|.+.+.. ...++.+.+.|...+..+..+..|-.+++.++ .|.+.+.| .+
T Consensus 377 -g~lla-----t~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS--~D~tlK~W-------~l 441 (775)
T KOG0319|consen 377 -GDLLA-----TGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVS--QDCTLKLW-------DL 441 (775)
T ss_pred -CcEEE-----EecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEec--CCceEEEe-------cC
Confidence 23444 34667899999994421 14456677888888888988887777655544 45666543 33
Q ss_pred eeCCcceeee-------ecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-ceeEEe--CCcCeeEEEECCCCCe
Q 013871 181 TTDGTHEGLV-------PLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL--GSGPYNTVRWNPKGKF 250 (434)
Q Consensus 181 ~~~~~~~~~v-------~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~-~~~~~~--~~~~~~~i~~SP~g~~ 250 (434)
.........+ ...|+..|++++.+|+.+.+| +|++|.+.+||++.. .....+ |+..+-++.|+|..+.
T Consensus 442 ~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiA--T~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~ 519 (775)
T KOG0319|consen 442 PKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIA--TGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQL 519 (775)
T ss_pred CCcccccccceehhhHHHHhhcccccceEecCCCceEE--ecccccceeeecccCceEEEEeeCCccceEEEEeccccce
Confidence 2211111111 123578999999999999999 899999999999963 333344 8899999999999999
Q ss_pred EEEEecCCCCCeEEEEEccCCEEEEEeeCCC--ceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc-eeee--eecc
Q 013871 251 LCLAGFGNLPGDMAFWDYVDGKQLGTTRAEC--SVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS-LFFK--KMFD 325 (434)
Q Consensus 251 l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~--~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~-~~~~--~~~~ 325 (434)
+++++ .|++|+||.++++.++.++.+|. +..++|-.+|..|++++. ||-+|||++... ++.. .|.+
T Consensus 520 laT~S---gD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~a------dGliKlWnikt~eC~~tlD~H~D 590 (775)
T KOG0319|consen 520 LATCS---GDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGA------DGLIKLWNIKTNECEMTLDAHND 590 (775)
T ss_pred eEecc---CCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccC------CCcEEEEeccchhhhhhhhhccc
Confidence 99998 45699999999999999999983 334999999999999999 999999999544 4444 4778
Q ss_pred cceeeEEEcCCCCCCCCc
Q 013871 326 KLFQAEWKPVSPDKFGDI 343 (434)
Q Consensus 326 ~~~~~~w~p~~~~~~~~~ 343 (434)
.+|.++=.|....+++..
T Consensus 591 rvWaL~~~~~~~~~~tgg 608 (775)
T KOG0319|consen 591 RVWALSVSPLLDMFVTGG 608 (775)
T ss_pred eeEEEeecCccceeEecC
Confidence 999999999887666543
No 50
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=5.1e-20 Score=171.74 Aligned_cols=271 Identities=15% Similarity=0.091 Sum_probs=209.7
Q ss_pred cceEEecCCCc--EEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCC
Q 013871 2 LLLLTCLRVGL--IIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTT 78 (434)
Q Consensus 2 V~~l~fSP~g~--~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~ 78 (434)
|.+|+|||..- +.+|.+ ..|.||+..+...+.+|.... ..+-++.|-.||++||.+. .|.|+|||..
T Consensus 29 vssl~fsp~~P~d~aVt~S-------~rvqly~~~~~~~~k~~srFk---~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k 98 (487)
T KOG0310|consen 29 VSSLCFSPKHPYDFAVTSS-------VRVQLYSSVTRSVRKTFSRFK---DVVYSVDFRSDGRLLAAGDESGHVKVFDMK 98 (487)
T ss_pred ceeEecCCCCCCceEEecc-------cEEEEEecchhhhhhhHHhhc---cceeEEEeecCCeEEEccCCcCcEEEeccc
Confidence 78999999653 444544 679999988877666554433 4455889999999999985 5899999966
Q ss_pred CCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEE
Q 013871 79 DFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLA 158 (434)
Q Consensus 79 ~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~ 158 (434)
.........-|...+....|+|.++.+++ +++.+..+++|++.+ ......++.|...+.+..|+|...++++
T Consensus 99 ~r~iLR~~~ah~apv~~~~f~~~d~t~l~-----s~sDd~v~k~~d~s~---a~v~~~l~~htDYVR~g~~~~~~~hivv 170 (487)
T KOG0310|consen 99 SRVILRQLYAHQAPVHVTKFSPQDNTMLV-----SGSDDKVVKYWDLST---AYVQAELSGHTDYVRCGDISPANDHIVV 170 (487)
T ss_pred cHHHHHHHhhccCceeEEEecccCCeEEE-----ecCCCceEEEEEcCC---cEEEEEecCCcceeEeeccccCCCeEEE
Confidence 53233344556677889999999555444 345567899999987 4556678889999999999999888866
Q ss_pred EEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-cceeE-Ee--
Q 013871 159 VAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPIL-EL-- 234 (434)
Q Consensus 159 ~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~-~~~~~-~~-- 234 (434)
.. +|+|...||...+.+ .....+++..||.++.+-|.|..++.+.| ..+++||+. +.+.. .+
T Consensus 171 tG---------sYDg~vrl~DtR~~~--~~v~elnhg~pVe~vl~lpsgs~iasAgG---n~vkVWDl~~G~qll~~~~~ 236 (487)
T KOG0310|consen 171 TG---------SYDGKVRLWDTRSLT--SRVVELNHGCPVESVLALPSGSLIASAGG---NSVKVWDLTTGGQLLTSMFN 236 (487)
T ss_pred ec---------CCCceEEEEEeccCC--ceeEEecCCCceeeEEEcCCCCEEEEcCC---CeEEEEEecCCceehhhhhc
Confidence 42 455555567665544 56778888999999999999999996433 389999996 44432 22
Q ss_pred CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC-CceEEEECCCCCEEEEEEcCCceeeCCcEEEEe
Q 013871 235 GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFH 313 (434)
Q Consensus 235 ~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~ 313 (434)
|...++|+++.-+++.|++++ +||.|++||+.+.+.+..+.-+ .+.+++.|||++.++.|-. ++.+-+=+
T Consensus 237 H~KtVTcL~l~s~~~rLlS~s---LD~~VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~viGms------nGlv~~rr 307 (487)
T KOG0310|consen 237 HNKTVTCLRLASDSTRLLSGS---LDRHVKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTVVIGMS------NGLVSIRR 307 (487)
T ss_pred ccceEEEEEeecCCceEeecc---cccceEEEEccceEEEEeeecccceeeEEecCCCceEEEecc------cceeeeeh
Confidence 889999999999999999999 8889999999999999988776 5667999999999999998 76665543
No 51
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=6.3e-20 Score=162.71 Aligned_cols=278 Identities=16% Similarity=0.229 Sum_probs=177.8
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEE-EEEeecCcCCCCCCeeeecCCCcEEEEe--cCCeEEEEeCC
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAV-YQLFQKNMTKTTWPSIRFSSDEAVACRM--ATNEIQFFDTT 78 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~-~~~~~~~~~~~~~~~~~~S~d~~~la~~--~~~~i~v~~~~ 78 (434)
|++|+||.||++|+|++ .|+.|+||++.+-+.. +.+..-+..-+.-+.+.|+||-+-++.. .++.|++|.+.
T Consensus 89 vt~~~FsSdGK~lat~~-----~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~ 163 (420)
T KOG2096|consen 89 VTDVAFSSDGKKLATIS-----GDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLV 163 (420)
T ss_pred eeeeEEcCCCceeEEEe-----CCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEee
Confidence 78999999999999999 8999999999764210 1111101011233478999998866655 45799999874
Q ss_pred CCCC--ceee-----eeecC-----CeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeE
Q 013871 79 DFPK--GILY-----RLRVP-----GVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQ 146 (434)
Q Consensus 79 ~~~~--~~~~-----~~~~~-----~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~ 146 (434)
.... .... .++++ .+.++-+..+ ..+|+.. ..+..|.||++. ++.+............
T Consensus 164 K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~-~k~imsa-----s~dt~i~lw~lk----Gq~L~~idtnq~~n~~ 233 (420)
T KOG2096|consen 164 KKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGN-AKYIMSA-----SLDTKICLWDLK----GQLLQSIDTNQSSNYD 233 (420)
T ss_pred ecccCCCCcccccccccccchhcccceEEEeecCC-ceEEEEe-----cCCCcEEEEecC----Cceeeeeccccccccc
Confidence 3211 1111 11122 2333333332 3444432 344579999986 4566655555556667
Q ss_pred EEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcce---eeeecC-CCCCeEEEEECcCCCEEEEEEccCCCeEE
Q 013871 147 LNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHE---GLVPLR-KEGPVHDVQWSYSGSEFAVVYGFMPASAT 222 (434)
Q Consensus 147 ~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~---~~v~l~-~~~~i~~v~wspdg~~~av~~g~~~~~v~ 222 (434)
.+.||+|.+|++.. .....+.|.- .+.-+|... ..+.|. +...|+.++|||++.+++ +-+.||+++
T Consensus 234 aavSP~GRFia~~g---FTpDVkVwE~-----~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~v--tvSkDG~wr 303 (420)
T KOG2096|consen 234 AAVSPDGRFIAVSG---FTPDVKVWEP-----IFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAV--TVSKDGKWR 303 (420)
T ss_pred eeeCCCCcEEEEec---CCCCceEEEE-----EeccCcchhhhhhhheeccchhheeeeeeCCCcceeE--EEecCCcEE
Confidence 78899999987754 2233333310 011122211 122232 467899999999999998 567799999
Q ss_pred EEecccc--------eeEEe-------CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEee---CCCceE
Q 013871 223 IFNKKCR--------PILEL-------GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTR---AECSVT 284 (434)
Q Consensus 223 l~d~~~~--------~~~~~-------~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~---~~~~~~ 284 (434)
|||..-. .+..+ +..++ .+..||.|+.|+++ ++. +|.++..++++..-.++ ...+++
T Consensus 304 iwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~-RL~lsP~g~~lA~s-~gs---~l~~~~se~g~~~~~~e~~h~~~Is~ 378 (420)
T KOG2096|consen 304 IWDTDVRYEAGQDPKILKEGSAPLHAAGSEPV-RLELSPSGDSLAVS-FGS---DLKVFASEDGKDYPELEDIHSTTISS 378 (420)
T ss_pred EeeccceEecCCCchHhhcCCcchhhcCCCce-EEEeCCCCcEEEee-cCC---ceEEEEcccCccchhHHHhhcCceee
Confidence 9987421 11111 22333 68999999999876 444 89999999887665554 337778
Q ss_pred EEECCCCCEEEEEEcCCceeeCCcEEEEe-ecC
Q 013871 285 SEWSPDGRYFMTATTAPRLQIDNGIKIFH-HNG 316 (434)
Q Consensus 285 ~~wspdg~~l~tas~~prl~~D~~i~iw~-~~g 316 (434)
++|+|||++++|++ |..+++.+ ..|
T Consensus 379 is~~~~g~~~atcG-------dr~vrv~~ntpg 404 (420)
T KOG2096|consen 379 ISYSSDGKYIATCG-------DRYVRVIRNTPG 404 (420)
T ss_pred EEecCCCcEEeeec-------ceeeeeecCCCc
Confidence 99999999999998 78888887 444
No 52
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=4.9e-20 Score=157.10 Aligned_cols=263 Identities=13% Similarity=0.130 Sum_probs=201.9
Q ss_pred CCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcC
Q 013871 48 TKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACG 126 (434)
Q Consensus 48 ~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~ 126 (434)
++..++.+.|+-||+|+++++ +.+|++|+............|...|.+.+.+-++ ..+| +.|.+..|.+|++.
T Consensus 16 ~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dn-skf~-----s~GgDk~v~vwDV~ 89 (307)
T KOG0316|consen 16 AQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDN-SKFA-----SCGGDKAVQVWDVN 89 (307)
T ss_pred cccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccc-cccc-----cCCCCceEEEEEcc
Confidence 347788999999999999885 5699999998876656666676678888888874 3343 45788899999999
Q ss_pred CCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecC-CCCCeEEEEECc
Q 013871 127 KDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR-KEGPVHDVQWSY 205 (434)
Q Consensus 127 ~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~-~~~~i~~v~wsp 205 (434)
+ ++.++....|.+.+..+.||.+... +++...|.+.+.|. ...... +....++ ....|.++..+
T Consensus 90 T---Gkv~Rr~rgH~aqVNtV~fNeesSV---v~SgsfD~s~r~wD-------CRS~s~-ePiQildea~D~V~Si~v~- 154 (307)
T KOG0316|consen 90 T---GKVDRRFRGHLAQVNTVRFNEESSV---VASGSFDSSVRLWD-------CRSRSF-EPIQILDEAKDGVSSIDVA- 154 (307)
T ss_pred c---CeeeeecccccceeeEEEecCcceE---EEeccccceeEEEE-------cccCCC-CccchhhhhcCceeEEEec-
Confidence 9 8999999999999999999998765 34455676666443 222221 2222222 24677777775
Q ss_pred CCCEEEEEEccCCCeEEEEecc-cceeEEeCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCc--
Q 013871 206 SGSEFAVVYGFMPASATIFNKK-CRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECS-- 282 (434)
Q Consensus 206 dg~~~av~~g~~~~~v~l~d~~-~~~~~~~~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~-- 282 (434)
+.+++ +|+.|++++.||++ +....+.-..|+|++.||+||+.++.+. +++++++.|.++|+++..+.+|..
T Consensus 155 -~heIv--aGS~DGtvRtydiR~G~l~sDy~g~pit~vs~s~d~nc~La~~---l~stlrLlDk~tGklL~sYkGhkn~e 228 (307)
T KOG0316|consen 155 -EHEIV--AGSVDGTVRTYDIRKGTLSSDYFGHPITSVSFSKDGNCSLASS---LDSTLRLLDKETGKLLKSYKGHKNME 228 (307)
T ss_pred -ccEEE--eeccCCcEEEEEeecceeehhhcCCcceeEEecCCCCEEEEee---ccceeeecccchhHHHHHhcccccce
Confidence 33444 69999999999997 4555566788999999999999999888 677999999999999999988833
Q ss_pred --eEEEECCCCCEEEEEEcCCceeeCCcEEEEeec-Cceeeeeecc---cceeeEEEcCCCCCCCCc
Q 013871 283 --VTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLFFKKMFD---KLFQAEWKPVSPDKFGDI 343 (434)
Q Consensus 283 --~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~-g~~~~~~~~~---~~~~~~w~p~~~~~~~~~ 343 (434)
+.|+++....++++++. |+.+.+||+. +..+.+.... .+-.+.+.|.-+.++.+.
T Consensus 229 ykldc~l~qsdthV~sgSE------DG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~ 289 (307)
T KOG0316|consen 229 YKLDCCLNQSDTHVFSGSE------DGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITAT 289 (307)
T ss_pred eeeeeeecccceeEEeccC------CceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEec
Confidence 34899999999999999 9999999984 4455444332 367889999888877764
No 53
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.86 E-value=1.4e-19 Score=180.33 Aligned_cols=262 Identities=14% Similarity=0.206 Sum_probs=196.0
Q ss_pred CCCCeeeecCCCcEEEEe-cCCeEEEEeCCCCC--CceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcC
Q 013871 50 TTWPSIRFSSDEAVACRM-ATNEIQFFDTTDFP--KGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACG 126 (434)
Q Consensus 50 ~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~~--~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~ 126 (434)
..+.++.||+||++++.+ .++.+++|+..... .......|...|.++.|||++. .++ +...+.+++||++.
T Consensus 160 ~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~-~l~-----s~s~D~tiriwd~~ 233 (456)
T KOG0266|consen 160 PSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGS-YLL-----SGSDDKTLRIWDLK 233 (456)
T ss_pred CceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCc-EEE-----EecCCceEEEeecc
Confidence 566689999999999988 57899999995544 2222345677899999999954 444 24566799999994
Q ss_pred CCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcC
Q 013871 127 KDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYS 206 (434)
Q Consensus 127 ~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspd 206 (434)
.. +..+.+...|...+.++.|+|+|+. ++. ...|.+.+.| .+ ..+.....--.+.++|..++|+++
T Consensus 234 ~~--~~~~~~l~gH~~~v~~~~f~p~g~~-i~S--gs~D~tvriW-------d~--~~~~~~~~l~~hs~~is~~~f~~d 299 (456)
T KOG0266|consen 234 DD--GRNLKTLKGHSTYVTSVAFSPDGNL-LVS--GSDDGTVRIW-------DV--RTGECVRKLKGHSDGISGLAFSPD 299 (456)
T ss_pred CC--CeEEEEecCCCCceEEEEecCCCCE-EEE--ecCCCcEEEE-------ec--cCCeEEEeeeccCCceEEEEECCC
Confidence 42 5778888899999999999999954 333 3355555533 32 232222222235789999999999
Q ss_pred CCEEEEEEccCCCeEEEEecccce---eEEe--CC-c-CeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC
Q 013871 207 GSEFAVVYGFMPASATIFNKKCRP---ILEL--GS-G-PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA 279 (434)
Q Consensus 207 g~~~av~~g~~~~~v~l~d~~~~~---~~~~--~~-~-~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~ 279 (434)
|+.|+. ++.|+.+++||+.... +..+ +. . +++++.|+|+|++|+++. .++.+.+||+..++.+..+..
T Consensus 300 ~~~l~s--~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~---~d~~~~~w~l~~~~~~~~~~~ 374 (456)
T KOG0266|consen 300 GNLLVS--ASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSAS---LDRTLKLWDLRSGKSVGTYTG 374 (456)
T ss_pred CCEEEE--cCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEec---CCCeEEEEEccCCcceeeecc
Confidence 999995 5669999999997665 2333 22 2 689999999999999998 556999999999988888877
Q ss_pred CCce-----EEEECCCCCEEEEEEcCCceeeCCcEEEEeec-Cceeee--ee-cccceeeEEEcCCCCCCCC
Q 013871 280 ECSV-----TSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLFFK--KM-FDKLFQAEWKPVSPDKFGD 342 (434)
Q Consensus 280 ~~~~-----~~~wspdg~~l~tas~~prl~~D~~i~iw~~~-g~~~~~--~~-~~~~~~~~w~p~~~~~~~~ 342 (434)
|... ....+++|+++++++. |+.|++|+.. +..+.. .+ ...+..+.|+|....+.+.
T Consensus 375 ~~~~~~~~~~~~~~~~~~~i~sg~~------d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~ 440 (456)
T KOG0266|consen 375 HSNLVRCIFSPTLSTGGKLIYSGSE------DGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASS 440 (456)
T ss_pred cCCcceeEecccccCCCCeEEEEeC------CceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeec
Confidence 6332 2445889999999999 9999999997 443333 34 5678889999998777665
No 54
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.86 E-value=3.6e-19 Score=189.93 Aligned_cols=285 Identities=14% Similarity=0.138 Sum_probs=195.9
Q ss_pred CCcEEEEEcCCCcEEEEEeec--CcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCC---C---ceeee-eecCCee
Q 013871 25 EKNVILWKTETGEAVYQLFQK--NMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFP---K---GILYR-LRVPGVA 94 (434)
Q Consensus 25 d~~v~iWd~~~g~~~~~~~~~--~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~---~---~~~~~-~~~~~v~ 94 (434)
++.+++|+..+......+... ..|...+.+++|++||+++|+++ ++.|+||+..... . ..... .....+.
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~ 536 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLS 536 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCcee
Confidence 455778887655443332211 11346677899999999999885 6799999975311 0 00111 1234678
Q ss_pred EEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECC-CCCeEEEEEEecccccCceeec
Q 013871 95 AFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNR-GSTGLLAVAQSDVDKTNQSYYG 173 (434)
Q Consensus 95 ~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~-~G~~l~~~~~~~~d~~~~~~~g 173 (434)
++.|+|..+..++. .+.++.|++|++.+ ++.+.....|...+..+.|+| +|..|+.. ..|.+.+.
T Consensus 537 ~l~~~~~~~~~las-----~~~Dg~v~lWd~~~---~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sg---s~Dg~v~i--- 602 (793)
T PLN00181 537 GICWNSYIKSQVAS-----SNFEGVVQVWDVAR---SQLVTEMKEHEKRVWSIDYSSADPTLLASG---SDDGSVKL--- 602 (793)
T ss_pred eEEeccCCCCEEEE-----EeCCCeEEEEECCC---CeEEEEecCCCCCEEEEEEcCCCCCEEEEE---cCCCEEEE---
Confidence 89998875566653 35678999999987 677777888888999999997 56654332 23444443
Q ss_pred ceeEEEEeeCCcceeeeecCCCCCeEEEEEC-cCCCEEEEEEccCCCeEEEEecccc--eeEEe--CCcCeeEEEECCCC
Q 013871 174 ESKLNYLTTDGTHEGLVPLRKEGPVHDVQWS-YSGSEFAVVYGFMPASATIFNKKCR--PILEL--GSGPYNTVRWNPKG 248 (434)
Q Consensus 174 ~~~l~~l~~~~~~~~~v~l~~~~~i~~v~ws-pdg~~~av~~g~~~~~v~l~d~~~~--~~~~~--~~~~~~~i~~SP~g 248 (434)
|.+ ... .....+.....|.++.|+ ++|..|+ +|..++.|++||++.. .+..+ |...+.++.|+ ++
T Consensus 603 ----Wd~--~~~-~~~~~~~~~~~v~~v~~~~~~g~~la--tgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~ 672 (793)
T PLN00181 603 ----WSI--NQG-VSIGTIKTKANICCVQFPSESGRSLA--FGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DS 672 (793)
T ss_pred ----EEC--CCC-cEEEEEecCCCeEEEEEeCCCCCEEE--EEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CC
Confidence 322 221 222223334678899995 5688877 5788999999999643 23333 77899999997 78
Q ss_pred CeEEEEecCCCCCeEEEEEccC------CEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc-ee
Q 013871 249 KFLCLAGFGNLPGDMAFWDYVD------GKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS-LF 319 (434)
Q Consensus 249 ~~l~~~~~~~~~g~i~iwd~~~------~~~i~~~~~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~-~~ 319 (434)
.+|++++ .|+.|+|||+.. .+.+..+.+| .+..+.|+|+|.+|++++. |+.|+||+.... .+
T Consensus 673 ~~lvs~s---~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~------D~~v~iw~~~~~~~~ 743 (793)
T PLN00181 673 STLVSSS---TDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSE------TNEVFVYHKAFPMPV 743 (793)
T ss_pred CEEEEEE---CCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeC------CCEEEEEECCCCCce
Confidence 8999998 556999999874 3567777776 3456999999999999999 999999997432 11
Q ss_pred ee---------------eecccceeeEEEcCCCCCCCC
Q 013871 320 FK---------------KMFDKLFQAEWKPVSPDKFGD 342 (434)
Q Consensus 320 ~~---------------~~~~~~~~~~w~p~~~~~~~~ 342 (434)
.. ...+.+..++|+|++..++..
T Consensus 744 ~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~ 781 (793)
T PLN00181 744 LSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAA 781 (793)
T ss_pred EEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEe
Confidence 10 011348899999998877765
No 55
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.86 E-value=8.2e-21 Score=170.93 Aligned_cols=253 Identities=14% Similarity=0.221 Sum_probs=178.7
Q ss_pred CCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCCCceeeeeecC-CeeEEEEeC
Q 013871 22 TPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPKGILYRLRVP-GVAAFEVSK 100 (434)
Q Consensus 22 ~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~-~v~~~~~sp 100 (434)
++.|+.|+|||+.+.+++.+|..+. ..+..+.++. +.++.++.|.+|+.|.+... ....+... .+..+.-+-
T Consensus 85 Gs~DG~VkiWnlsqR~~~~~f~AH~---G~V~Gi~v~~-~~~~tvgdDKtvK~wk~~~~---p~~tilg~s~~~gIdh~~ 157 (433)
T KOG0268|consen 85 GSCDGEVKIWNLSQRECIRTFKAHE---GLVRGICVTQ-TSFFTVGDDKTVKQWKIDGP---PLHTILGKSVYLGIDHHR 157 (433)
T ss_pred cccCceEEEEehhhhhhhheeeccc---CceeeEEecc-cceEEecCCcceeeeeccCC---cceeeecccccccccccc
Confidence 3489999999999999999998865 5666777776 77777778889999998763 22222222 222332221
Q ss_pred CCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEE
Q 013871 101 APGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYL 180 (434)
Q Consensus 101 ~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l 180 (434)
. ..+|. ++| ..|.||+... ..|+.+.+..-..+.++++||-.+.|+..+. .|.+.. ||.+
T Consensus 158 ~----~~~Fa--TcG--e~i~IWD~~R---~~Pv~smswG~Dti~svkfNpvETsILas~~--sDrsIv-------LyD~ 217 (433)
T KOG0268|consen 158 K----NSVFA--TCG--EQIDIWDEQR---DNPVSSMSWGADSISSVKFNPVETSILASCA--SDRSIV-------LYDL 217 (433)
T ss_pred c----ccccc--ccC--ceeeeccccc---CCccceeecCCCceeEEecCCCcchheeeec--cCCceE-------EEec
Confidence 1 11221 112 3789999987 7888888888888899999999998866543 333332 3333
Q ss_pred eeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc--ce--eEEeCCcCeeEEEECCCCCeEEEEec
Q 013871 181 TTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC--RP--ILELGSGPYNTVRWNPKGKFLCLAGF 256 (434)
Q Consensus 181 ~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~--~~--~~~~~~~~~~~i~~SP~g~~l~~~~~ 256 (434)
....- ...+.+ ...-+.++|+|.+-.|. ++.+|..++.||++. .+ ++.-|...+.++.|||.|+-+++|++
T Consensus 218 R~~~P-l~KVi~--~mRTN~IswnPeafnF~--~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Efvsgsy 292 (433)
T KOG0268|consen 218 RQASP-LKKVIL--TMRTNTICWNPEAFNFV--AANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSY 292 (433)
T ss_pred ccCCc-cceeee--eccccceecCcccccee--eccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccc
Confidence 22221 111212 45567899999554444 799999999999973 22 33347788999999999999999997
Q ss_pred CCCCCeEEEEEccCCE---EEEEeeCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec
Q 013871 257 GNLPGDMAFWDYVDGK---QLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN 315 (434)
Q Consensus 257 ~~~~g~i~iwd~~~~~---~i~~~~~~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~ 315 (434)
|. +|+||.++.+. ...+-.-..+.++.||-|.+|+++|+. |+.|++|.-.
T Consensus 293 Dk---sIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSd------d~nvRlWka~ 345 (433)
T KOG0268|consen 293 DK---SIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSD------DGNVRLWKAK 345 (433)
T ss_pred cc---eEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCC------Ccceeeeecc
Confidence 76 99999988763 233333357888999999999999999 9999999863
No 56
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.85 E-value=1.3e-20 Score=172.25 Aligned_cols=267 Identities=14% Similarity=0.231 Sum_probs=193.5
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCc--EEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCC
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGE--AVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTT 78 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~--~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~ 78 (434)
|..+.|=++...|+|.+ .|..|++|++..++ .+.++.+.. ..+..+.|.+++++++.. .|+.+++|+++
T Consensus 178 v~~v~~l~~sdtlatgg-----~Dr~Ik~W~v~~~k~~~~~tLaGs~---g~it~~d~d~~~~~~iAas~d~~~r~Wnvd 249 (459)
T KOG0288|consen 178 VHDVEFLRNSDTLATGG-----SDRIIKLWNVLGEKSELISTLAGSL---GNITSIDFDSDNKHVIAASNDKNLRLWNVD 249 (459)
T ss_pred cceeEEccCcchhhhcc-----hhhhhhhhhcccchhhhhhhhhccC---CCcceeeecCCCceEEeecCCCceeeeecc
Confidence 34567777777888877 89999999987665 445555543 678899999999877766 56799999999
Q ss_pred CCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccce-eEEEECCCCCeEE
Q 013871 79 DFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCST-VQLNWNRGSTGLL 157 (434)
Q Consensus 79 ~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~-~~~~ws~~G~~l~ 157 (434)
+.........|.+.|.++.+.-+....| ++..+.++++|++.. ..+.++.+.... ..+.-+ ..
T Consensus 250 ~~r~~~TLsGHtdkVt~ak~~~~~~~vV------sgs~DRtiK~WDl~k-----~~C~kt~l~~S~cnDI~~~-----~~ 313 (459)
T KOG0288|consen 250 SLRLRHTLSGHTDKVTAAKFKLSHSRVV------SGSADRTIKLWDLQK-----AYCSKTVLPGSQCNDIVCS-----IS 313 (459)
T ss_pred chhhhhhhcccccceeeehhhcccccee------eccccchhhhhhhhh-----hheeccccccccccceEec-----ce
Confidence 8776677788888999888776532211 356678999999954 444444433221 122222 22
Q ss_pred EEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeEEe---
Q 013871 158 AVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL--- 234 (434)
Q Consensus 158 ~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~~--- 234 (434)
...+...|+..+.|.+ .+. .+...++-.|.|.++..+++|.++.. ...|..+.++|+++..+...
T Consensus 314 ~~~SgH~DkkvRfwD~---------Rs~-~~~~sv~~gg~vtSl~ls~~g~~lLs--ssRDdtl~viDlRt~eI~~~~sA 381 (459)
T KOG0288|consen 314 DVISGHFDKKVRFWDI---------RSA-DKTRSVPLGGRVTSLDLSMDGLELLS--SSRDDTLKVIDLRTKEIRQTFSA 381 (459)
T ss_pred eeeecccccceEEEec---------cCC-ceeeEeecCcceeeEeeccCCeEEee--ecCCCceeeeecccccEEEEeec
Confidence 3445556666655442 222 23333333679999999999999985 46677999999997766542
Q ss_pred ----CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC----CceEEEECCCCCEEEEEEcCCceeeC
Q 013871 235 ----GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE----CSVTSEWSPDGRYFMTATTAPRLQID 306 (434)
Q Consensus 235 ----~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~----~~~~~~wspdg~~l~tas~~prl~~D 306 (434)
.....+.+.|||+|.|++.|+ .+|.|+||++.++++...+... .++.++|+|.|.++++++. +
T Consensus 382 ~g~k~asDwtrvvfSpd~~YvaAGS---~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk------~ 452 (459)
T KOG0288|consen 382 EGFKCASDWTRVVFSPDGSYVAAGS---ADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADK------Q 452 (459)
T ss_pred cccccccccceeEECCCCceeeecc---CCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccC------C
Confidence 234578899999999999998 7789999999999877666543 4778999999999999998 9
Q ss_pred CcEEEEe
Q 013871 307 NGIKIFH 313 (434)
Q Consensus 307 ~~i~iw~ 313 (434)
..+.+|.
T Consensus 453 ~~v~lW~ 459 (459)
T KOG0288|consen 453 KAVTLWT 459 (459)
T ss_pred cceEecC
Confidence 9999994
No 57
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.85 E-value=8.4e-20 Score=185.08 Aligned_cols=240 Identities=16% Similarity=0.242 Sum_probs=174.6
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCC-------Cc-----------EEEEEeecCcCCCCCCeeeecCCCcE
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTET-------GE-----------AVYQLFQKNMTKTTWPSIRFSSDEAV 63 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~-------g~-----------~~~~~~~~~~~~~~~~~~~~S~d~~~ 63 (434)
|.|+.|||||+|||+++ +|+.|.||.-.. |. ++..+..| ...+..+.||||+.+
T Consensus 72 v~CVR~S~dG~~lAsGS-----DD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H---~~DV~Dv~Wsp~~~~ 143 (942)
T KOG0973|consen 72 VNCVRFSPDGSYLASGS-----DDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGH---DSDVLDVNWSPDDSL 143 (942)
T ss_pred eeEEEECCCCCeEeecc-----CcceEEEeeecccCCcccccccccccccceeeEEEEEecC---CCccceeccCCCccE
Confidence 78999999999999988 899999998762 11 34445443 366778999999999
Q ss_pred EEEe-cCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeee--ec
Q 013871 64 ACRM-ATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRS--FF 140 (434)
Q Consensus 64 la~~-~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~--~~ 140 (434)
||++ .|++|.||+...|........|..-|..+.|.|- +.++|. .+.+.++++|++.++. .....+ |-
T Consensus 144 lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~-Gky~AS-----qsdDrtikvwrt~dw~---i~k~It~pf~ 214 (942)
T KOG0973|consen 144 LVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPI-GKYFAS-----QSDDRTLKVWRTSDWG---IEKSITKPFE 214 (942)
T ss_pred EEEecccceEEEEccccceeeeeeecccccccceEECCc-cCeeee-----ecCCceEEEEEcccce---eeEeeccchh
Confidence 9998 4789999999999776777788888999999998 677774 4566799999987642 222221 11
Q ss_pred ----ccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeee-ecCCCCCeEEEEECcC------C--
Q 013871 141 ----RCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLV-PLRKEGPVHDVQWSYS------G-- 207 (434)
Q Consensus 141 ----~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v-~l~~~~~i~~v~wspd------g-- 207 (434)
..-...+.|||||.+|+..... +. +...+-+++- +.....+ -+.|.+++..+.|+|. .
T Consensus 215 ~~~~~T~f~RlSWSPDG~~las~nA~-----n~---~~~~~~IieR-~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng 285 (942)
T KOG0973|consen 215 ESPLTTFFLRLSWSPDGHHLASPNAV-----NG---GKSTIAIIER-GTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNG 285 (942)
T ss_pred hCCCcceeeecccCCCcCeecchhhc-----cC---CcceeEEEec-CCceeeeeeecCCCceEEEEeChHHhccccccC
Confidence 1233578999999998664322 11 2223344443 2222222 3456889999999972 1
Q ss_pred -------CEEEEEEccCCCeEEEEecc-cceeE---EeCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccC
Q 013871 208 -------SEFAVVYGFMPASATIFNKK-CRPIL---ELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD 270 (434)
Q Consensus 208 -------~~~av~~g~~~~~v~l~d~~-~~~~~---~~~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~ 270 (434)
.+.+++.|+.|+.+.||... ..+++ ++-...|++++|||||..|+.++ +||+|.+...+.
T Consensus 286 ~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS---~DGtV~~i~Fee 356 (942)
T KOG0973|consen 286 TSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACS---LDGTVALIHFEE 356 (942)
T ss_pred CccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEe---cCCeEEEEEcch
Confidence 12255579999999999884 45544 34578999999999999999998 778999998875
No 58
>PTZ00421 coronin; Provisional
Probab=99.85 E-value=1.9e-18 Score=172.07 Aligned_cols=238 Identities=11% Similarity=0.158 Sum_probs=154.7
Q ss_pred ceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEE-------------EEeecCcCCCCCCeeeecC-CCcEEEEec
Q 013871 3 LLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVY-------------QLFQKNMTKTTWPSIRFSS-DEAVACRMA 68 (434)
Q Consensus 3 ~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~-------------~~~~~~~~~~~~~~~~~S~-d~~~la~~~ 68 (434)
....+++|+..+++++ .+.....|+...|..+. .+.+ |...+.+++|+| |+++|++++
T Consensus 24 ~~~~~~~d~~~~~~~n-----~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~G---H~~~V~~v~fsP~d~~~LaSgS 95 (493)
T PTZ00421 24 TPSTALWDCSNTIACN-----DRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLG---QEGPIIDVAFNPFDPQKLFTAS 95 (493)
T ss_pred ccccccCCCCCcEeEC-----CceEEEEEecCCceEEeeccccccCCCCCceEeC---CCCCEEEEEEcCCCCCEEEEEe
Confidence 4456778866666555 34445566544433221 1222 446777999999 888888885
Q ss_pred -CCeEEEEeCCCCCC-------ceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeec
Q 013871 69 -TNEIQFFDTTDFPK-------GILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFF 140 (434)
Q Consensus 69 -~~~i~v~~~~~~~~-------~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~ 140 (434)
|++|++|++..... ......|...|..+.|+|+....++. .+.++.|+||++.. ++
T Consensus 96 ~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaS-----gs~DgtVrIWDl~t---g~-------- 159 (493)
T PTZ00421 96 EDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLAS-----AGADMVVNVWDVER---GK-------- 159 (493)
T ss_pred CCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEE-----EeCCCEEEEEECCC---Ce--------
Confidence 67999999875321 11222344456777777764444442 24456677777643 11
Q ss_pred ccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCe
Q 013871 141 RCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPAS 220 (434)
Q Consensus 141 ~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~ 220 (434)
.+ ..+ . .+...|.+++|+|+|..|+ ++..|+.
T Consensus 160 --------------~~---------------------~~l---~--------~h~~~V~sla~spdG~lLa--tgs~Dg~ 191 (493)
T PTZ00421 160 --------------AV---------------------EVI---K--------CHSDQITSLEWNLDGSLLC--TTSKDKK 191 (493)
T ss_pred --------------EE---------------------EEE---c--------CCCCceEEEEEECCCCEEE--EecCCCE
Confidence 00 000 0 1256799999999999888 5788999
Q ss_pred EEEEeccc-ceeEEe--CCcC-eeEEEECCCCCeEEEEecC-CCCCeEEEEEccCCE-EEEEeeCC---CceEEEECCCC
Q 013871 221 ATIFNKKC-RPILEL--GSGP-YNTVRWNPKGKFLCLAGFG-NLPGDMAFWDYVDGK-QLGTTRAE---CSVTSEWSPDG 291 (434)
Q Consensus 221 v~l~d~~~-~~~~~~--~~~~-~~~i~~SP~g~~l~~~~~~-~~~g~i~iwd~~~~~-~i~~~~~~---~~~~~~wspdg 291 (434)
|++||++. ..+..+ |.+. ...+.|+|++..|+++|+. ..++.|.|||+++.. .+.....+ .+..+.|+||+
T Consensus 192 IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~ 271 (493)
T PTZ00421 192 LNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDT 271 (493)
T ss_pred EEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCC
Confidence 99999974 445444 4433 4568899999888887754 357899999998753 34333222 33347899999
Q ss_pred CEEEEEEcCCceeeCCcEEEEeecCc
Q 013871 292 RYFMTATTAPRLQIDNGIKIFHHNGS 317 (434)
Q Consensus 292 ~~l~tas~~prl~~D~~i~iw~~~g~ 317 (434)
.+|++++.. |+.|++|++...
T Consensus 272 ~~L~lggkg-----Dg~Iriwdl~~~ 292 (493)
T PTZ00421 272 NLLYIGSKG-----EGNIRCFELMNE 292 (493)
T ss_pred CEEEEEEeC-----CCeEEEEEeeCC
Confidence 999998743 999999999543
No 59
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=7.2e-19 Score=168.30 Aligned_cols=266 Identities=13% Similarity=0.104 Sum_probs=212.2
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCC-eEEEEeCCCC
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATN-EIQFFDTTDF 80 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~-~i~v~~~~~~ 80 (434)
|.++.|+|...++++.- ..++|.|||.++...+++|.-.. ..+++..|-+--+++++++|+ .|+||+.+..
T Consensus 16 VKsVd~HPtePw~la~L-----ynG~V~IWnyetqtmVksfeV~~---~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ 87 (794)
T KOG0276|consen 16 VKSVDFHPTEPWILAAL-----YNGDVQIWNYETQTMVKSFEVSE---VPVRAAKFIARKNWIVTGSDDMQIRVFNYNTG 87 (794)
T ss_pred eeeeecCCCCceEEEee-----ecCeeEEEecccceeeeeeeecc---cchhhheeeeccceEEEecCCceEEEEecccc
Confidence 78999999999999876 67999999999999999997754 677788888888899999765 9999999998
Q ss_pred CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEE
Q 013871 81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVA 160 (434)
Q Consensus 81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~ 160 (434)
++.....-|.+-|++++.+|. .+++.. ...+..|++|+..+. =......+.|..-+.++.++|....- .+
T Consensus 88 ekV~~FeAH~DyIR~iavHPt-~P~vLt-----sSDDm~iKlW~we~~--wa~~qtfeGH~HyVMqv~fnPkD~nt--Fa 157 (794)
T KOG0276|consen 88 EKVKTFEAHSDYIRSIAVHPT-LPYVLT-----SSDDMTIKLWDWENE--WACEQTFEGHEHYVMQVAFNPKDPNT--FA 157 (794)
T ss_pred eeeEEeeccccceeeeeecCC-CCeEEe-----cCCccEEEEeeccCc--eeeeeEEcCcceEEEEEEecCCCccc--ee
Confidence 887777788889999999999 566553 455679999999763 34555667788889999999987754 34
Q ss_pred EecccccCceeecceeEEEEeeCCcceeeeecC-CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc---ceeEEeCC
Q 013871 161 QSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR-KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC---RPILELGS 236 (434)
Q Consensus 161 ~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~-~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~---~~~~~~~~ 236 (434)
+...|.+.+.| .+ |...+.++++ ++..|+++.+-+-|..-.+|+|..|..+++||-.+ .++.+-|.
T Consensus 158 S~sLDrTVKVW-------sl---gs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt 227 (794)
T KOG0276|consen 158 SASLDRTVKVW-------SL---GSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHT 227 (794)
T ss_pred eeeccccEEEE-------Ec---CCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhccc
Confidence 55578887754 33 3334445554 57899999999988777777999999999999864 33444488
Q ss_pred cCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC--CCceEEEECCCCCEEEEEE
Q 013871 237 GPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA--ECSVTSEWSPDGRYFMTAT 298 (434)
Q Consensus 237 ~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~--~~~~~~~wspdg~~l~tas 298 (434)
..++.++|+|.=-++++|+ .||+|+||+..+.++..++.- ..+.+++-.++++.++.|.
T Consensus 228 ~Nvs~v~fhp~lpiiisgs---EDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~ 288 (794)
T KOG0276|consen 228 NNVSFVFFHPELPIIISGS---EDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGF 288 (794)
T ss_pred ccceEEEecCCCcEEEEec---CCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEec
Confidence 9999999999999999998 789999999999877665543 3677777778877777776
No 60
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=5e-19 Score=175.26 Aligned_cols=281 Identities=11% Similarity=0.109 Sum_probs=222.4
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCC-eEEEEeCCCC
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATN-EIQFFDTTDF 80 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~-~i~v~~~~~~ 80 (434)
|..|+|+|.--+++|.- ..+.|++||-.=|.++..|..+. ..|+.+.|.|+.-++++++|+ .|+||+....
T Consensus 12 vKglsFHP~rPwILtsl-----HsG~IQlWDYRM~tli~rFdeHd---GpVRgv~FH~~qplFVSGGDDykIkVWnYk~r 83 (1202)
T KOG0292|consen 12 VKGLSFHPKRPWILTSL-----HSGVIQLWDYRMGTLIDRFDEHD---GPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTR 83 (1202)
T ss_pred ccceecCCCCCEEEEee-----cCceeeeehhhhhhHHhhhhccC---CccceeeecCCCCeEEecCCccEEEEEecccc
Confidence 57899999999999876 67899999999999999998765 789999999999999999876 9999999887
Q ss_pred CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEE
Q 013871 81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVA 160 (434)
Q Consensus 81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~ 160 (434)
........|.+-|+.+.|++. -+-|. +...+.+|+||+..+ +..++..++|...+.+..|+|....| +
T Consensus 84 rclftL~GHlDYVRt~~FHhe-yPWIl-----SASDDQTIrIWNwqs---r~~iavltGHnHYVMcAqFhptEDlI---V 151 (1202)
T KOG0292|consen 84 RCLFTLLGHLDYVRTVFFHHE-YPWIL-----SASDDQTIRIWNWQS---RKCIAVLTGHNHYVMCAQFHPTEDLI---V 151 (1202)
T ss_pred eehhhhccccceeEEeeccCC-CceEE-----EccCCCeEEEEeccC---CceEEEEecCceEEEeeccCCccceE---E
Confidence 766677788899999999987 34333 235567999999998 89999999999999999999987753 3
Q ss_pred EecccccCceeecceeEE------------------EEeeCCcceeeee--c-CCCCCeEEEEECcCCCEEEEEEccCCC
Q 013871 161 QSDVDKTNQSYYGESKLN------------------YLTTDGTHEGLVP--L-RKEGPVHDVQWSYSGSEFAVVYGFMPA 219 (434)
Q Consensus 161 ~~~~d~~~~~~~g~~~l~------------------~l~~~~~~~~~v~--l-~~~~~i~~v~wspdg~~~av~~g~~~~ 219 (434)
+...|++.+.|.-.. |- ..++.|..+..+. + .+...|+-++|+|.-..|+ +|..|.
T Consensus 152 SaSLDQTVRVWDisG-LRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliV--SG~DDR 228 (1202)
T KOG0292|consen 152 SASLDQTVRVWDISG-LRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIV--SGADDR 228 (1202)
T ss_pred EecccceEEEEeecc-hhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEE--ecCCcc
Confidence 445788888774210 00 0112232232222 2 2567889999999876666 799999
Q ss_pred eEEEEecccceeEE-----eCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC--CCceEEEECCCCC
Q 013871 220 SATIFNKKCRPILE-----LGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA--ECSVTSEWSPDGR 292 (434)
Q Consensus 220 ~v~l~d~~~~~~~~-----~~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~--~~~~~~~wspdg~ 292 (434)
.|++|.+......+ -|...+.++-|+|+-.+|++.+ .|+.|+|||+...+.+.++.. ...+.++-+|...
T Consensus 229 qVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSns---EDksirVwDm~kRt~v~tfrrendRFW~laahP~lN 305 (1202)
T KOG0292|consen 229 QVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNS---EDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELN 305 (1202)
T ss_pred eeeEEEeccccceeehhhhcccCCcceEEecCccceeEecC---CCccEEEEecccccceeeeeccCCeEEEEEecCCcc
Confidence 99999875333222 2788999999999999999988 778999999999998888844 4667799999999
Q ss_pred EEEEEEcCCceeeCCcEEEEeec
Q 013871 293 YFMTATTAPRLQIDNGIKIFHHN 315 (434)
Q Consensus 293 ~l~tas~~prl~~D~~i~iw~~~ 315 (434)
.|+.|. |+++.+|.++
T Consensus 306 LfAAgH-------DsGm~VFkle 321 (1202)
T KOG0292|consen 306 LFAAGH-------DSGMIVFKLE 321 (1202)
T ss_pred eeeeec-------CCceEEEEEc
Confidence 887665 8999999885
No 61
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=1.2e-18 Score=151.56 Aligned_cols=217 Identities=18% Similarity=0.257 Sum_probs=163.7
Q ss_pred eeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeee----eecccceeEEEECCCCCeEEEEEE
Q 013871 86 YRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARR----SFFRCSTVQLNWNRGSTGLLAVAQ 161 (434)
Q Consensus 86 ~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~----~~~~~~~~~~~ws~~G~~l~~~~~ 161 (434)
...+.+.+..++|+|..+..+| +.+.+..|+||+... ......+ .+|+..+..++|+|.|++|+.
T Consensus 10 ~~gh~~r~W~~awhp~~g~ilA-----scg~Dk~vriw~~~~---~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~--- 78 (312)
T KOG0645|consen 10 LSGHKDRVWSVAWHPGKGVILA-----SCGTDKAVRIWSTSS---GDSWTCKTVLDDGHKRSVRSVAWSPHGRYLAS--- 78 (312)
T ss_pred ecCCCCcEEEEEeccCCceEEE-----eecCCceEEEEecCC---CCcEEEEEeccccchheeeeeeecCCCcEEEE---
Confidence 3455667999999998544555 467788999999974 1222222 357888899999999997554
Q ss_pred ecccccCceeecceeEEEEeeCCcceeeeecC-CCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc------cceeEEe
Q 013871 162 SDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR-KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK------CRPILEL 234 (434)
Q Consensus 162 ~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~-~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~------~~~~~~~ 234 (434)
...|.+.. ||. ...+.+++.-.|+ ++..|.+++||++|++|| +++.|..|.||... +..+.+-
T Consensus 79 aSFD~t~~-------Iw~-k~~~efecv~~lEGHEnEVK~Vaws~sG~~LA--TCSRDKSVWiWe~deddEfec~aVL~~ 148 (312)
T KOG0645|consen 79 ASFDATVV-------IWK-KEDGEFECVATLEGHENEVKCVAWSASGNYLA--TCSRDKSVWIWEIDEDDEFECIAVLQE 148 (312)
T ss_pred eeccceEE-------Eee-cCCCceeEEeeeeccccceeEEEEcCCCCEEE--EeeCCCeEEEEEecCCCcEEEEeeecc
Confidence 22444433 332 1245556666665 588999999999999999 56778999999774 2334444
Q ss_pred CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEcc---CCEEEEEeeCCC--ceEEEECCCCCEEEEEEcCCceeeCCcE
Q 013871 235 GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV---DGKQLGTTRAEC--SVTSEWSPDGRYFMTATTAPRLQIDNGI 309 (434)
Q Consensus 235 ~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~---~~~~i~~~~~~~--~~~~~wspdg~~l~tas~~prl~~D~~i 309 (434)
|...+..+.|+|.-.+|+++++|| +|++|.-. +.+++.++.+|. +..++|+|.|..|++++. |+++
T Consensus 149 HtqDVK~V~WHPt~dlL~S~SYDn---TIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sd------D~tv 219 (312)
T KOG0645|consen 149 HTQDVKHVIWHPTEDLLFSCSYDN---TIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSD------DGTV 219 (312)
T ss_pred ccccccEEEEcCCcceeEEeccCC---eEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecC------Ccce
Confidence 889999999999999999999887 99999866 448899999884 445999999999999999 9999
Q ss_pred EEEeecCceeeeeecccceeeEEE
Q 013871 310 KIFHHNGSLFFKKMFDKLFQAEWK 333 (434)
Q Consensus 310 ~iw~~~g~~~~~~~~~~~~~~~w~ 333 (434)
+||.+- .-+...+...+|.+.|.
T Consensus 220 ~Iw~~~-~~~~~~~sr~~Y~v~W~ 242 (312)
T KOG0645|consen 220 SIWRLY-TDLSGMHSRALYDVPWD 242 (312)
T ss_pred Eeeeec-cCcchhcccceEeeeec
Confidence 999954 22233445679999999
No 62
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=3.6e-18 Score=151.82 Aligned_cols=260 Identities=15% Similarity=0.212 Sum_probs=186.5
Q ss_pred CCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceeeeeecC--CeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcC
Q 013871 50 TTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRLRVP--GVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACG 126 (434)
Q Consensus 50 ~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~~~~--~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~ 126 (434)
..+.++.|++||.+|+++. |+.|++||..+... ...+... ++..+.|.-... .+++. +...+..|+..++-
T Consensus 15 ~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~--~~ti~skkyG~~~~~Fth~~~--~~i~s--Stk~d~tIryLsl~ 88 (311)
T KOG1446|consen 15 GKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQ--VKTINSKKYGVDLACFTHHSN--TVIHS--STKEDDTIRYLSLH 88 (311)
T ss_pred CceeEEEecCCCCEEEEecCCCeEEEEEcCCCce--eeEeecccccccEEEEecCCc--eEEEc--cCCCCCceEEEEee
Confidence 5667999999999999874 56999999987543 3334333 455544443211 22222 22455789999998
Q ss_pred CCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcC
Q 013871 127 KDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYS 206 (434)
Q Consensus 127 ~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspd 206 (434)
+ ++-++-..+|+..+..+.-+|-++..+ ++..|++.+ ||.+.+... ...+.+ ..-.-++|.|+
T Consensus 89 d---NkylRYF~GH~~~V~sL~~sP~~d~Fl---S~S~D~tvr-------LWDlR~~~c-qg~l~~---~~~pi~AfDp~ 151 (311)
T KOG1446|consen 89 D---NKYLRYFPGHKKRVNSLSVSPKDDTFL---SSSLDKTVR-------LWDLRVKKC-QGLLNL---SGRPIAAFDPE 151 (311)
T ss_pred c---CceEEEcCCCCceEEEEEecCCCCeEE---ecccCCeEE-------eeEecCCCC-ceEEec---CCCcceeECCC
Confidence 8 889999999999999999999887643 334666665 455543222 222222 22235899999
Q ss_pred CCEEEEEEccCCCeEEEEecc---cceeEEe--C---CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEee
Q 013871 207 GSEFAVVYGFMPASATIFNKK---CRPILEL--G---SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTR 278 (434)
Q Consensus 207 g~~~av~~g~~~~~v~l~d~~---~~~~~~~--~---~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~ 278 (434)
|-.||++.+. ..|+|||++ ..+..+| . ....+.|.|||||++|+++. ..+.+++.|.=+|..+.++.
T Consensus 152 GLifA~~~~~--~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT---~~s~~~~lDAf~G~~~~tfs 226 (311)
T KOG1446|consen 152 GLIFALANGS--ELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLST---NASFIYLLDAFDGTVKSTFS 226 (311)
T ss_pred CcEEEEecCC--CeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEe---CCCcEEEEEccCCcEeeeEe
Confidence 9999975444 399999997 3444444 3 56778999999999999998 44699999999999888887
Q ss_pred CC-----CceEEEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceeeee---ecccceeeEEEcCCCCCCCCc
Q 013871 279 AE-----CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKK---MFDKLFQAEWKPVSPDKFGDI 343 (434)
Q Consensus 279 ~~-----~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~-~g~~~~~~---~~~~~~~~~w~p~~~~~~~~~ 343 (434)
.+ ......|+|||+++++++. |+.|.||++ +|..+... +.....++.|+|.-.-..++.
T Consensus 227 ~~~~~~~~~~~a~ftPds~Fvl~gs~------dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~ 294 (311)
T KOG1446|consen 227 GYPNAGNLPLSATFTPDSKFVLSGSD------DGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSAS 294 (311)
T ss_pred eccCCCCcceeEEECCCCcEEEEecC------CCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecC
Confidence 65 2245899999999999999 999999999 45554443 345678888999876666654
No 63
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=5.8e-19 Score=175.80 Aligned_cols=255 Identities=16% Similarity=0.207 Sum_probs=181.0
Q ss_pred CCCCeeeecCCCcEEEEe-cCCeEEEEeCCCC-CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCC
Q 013871 50 TTWPSIRFSSDEAVACRM-ATNEIQFFDTTDF-PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGK 127 (434)
Q Consensus 50 ~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~-~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~ 127 (434)
.+.+.+.|.|||.+++++ .++.|++|+..+. +.......+.+.|.+++..- + .++. +...+.|.+|.+++
T Consensus 14 ~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s--~-~f~~-----~s~~~tv~~y~fps 85 (933)
T KOG1274|consen 14 GGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYS--N-HFLT-----GSEQNTVLRYKFPS 85 (933)
T ss_pred CceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecc--c-ceEE-----eeccceEEEeeCCC
Confidence 556689999999999887 5679999998775 33222222334455444332 2 2221 34567899999998
Q ss_pred CCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCC
Q 013871 128 DLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSG 207 (434)
Q Consensus 128 ~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg 207 (434)
. ..-..+.-|......++++.+|+.++... .| ..+.+++........+.-.++++|.++.|+|++
T Consensus 86 ~---~~~~iL~Rftlp~r~~~v~g~g~~iaags---dD---------~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~ 150 (933)
T KOG1274|consen 86 G---EEDTILARFTLPIRDLAVSGSGKMIAAGS---DD---------TAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKG 150 (933)
T ss_pred C---CccceeeeeeccceEEEEecCCcEEEeec---Cc---------eeEEEEeccccchheeecccCCceeeeeEcCCC
Confidence 4 44434444556777889999999876542 11 134555555544455555679999999999999
Q ss_pred CEEEEEEccCCCeEEEEeccccee-EE---------eC-CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEE
Q 013871 208 SEFAVVYGFMPASATIFNKKCRPI-LE---------LG-SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGT 276 (434)
Q Consensus 208 ~~~av~~g~~~~~v~l~d~~~~~~-~~---------~~-~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~ 276 (434)
..+|++++ +|+|++||+....+ +. +. ...++.++|+|+|..+++.+ .++.|.+|+..+++....
T Consensus 151 ~fLAvss~--dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~---~d~~Vkvy~r~~we~~f~ 225 (933)
T KOG1274|consen 151 NFLAVSSC--DGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPP---VDNTVKVYSRKGWELQFK 225 (933)
T ss_pred CEEEEEec--CceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeec---cCCeEEEEccCCceehee
Confidence 99998644 78999999964332 11 22 45667899999988777777 455999999999977666
Q ss_pred eeCC----CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceeeeeecccceeeEEEcCCCCC
Q 013871 277 TRAE----CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKKMFDKLFQAEWKPVSPDK 339 (434)
Q Consensus 277 ~~~~----~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~~~~~~~~~~~~~~w~p~~~~~ 339 (434)
+... ..+.++|||.|.|||+++. ||.|-|||++.... +.....+.+.+|.|....+
T Consensus 226 Lr~~~~ss~~~~~~wsPnG~YiAAs~~------~g~I~vWnv~t~~~-~~~~~~Vc~~aw~p~~n~i 285 (933)
T KOG1274|consen 226 LRDKLSSSKFSDLQWSPNGKYIAASTL------DGQILVWNVDTHER-HEFKRAVCCEAWKPNANAI 285 (933)
T ss_pred ecccccccceEEEEEcCCCcEEeeecc------CCcEEEEecccchh-ccccceeEEEecCCCCCee
Confidence 6432 3556999999999999999 99999999987222 2344579999999988743
No 64
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=2.8e-19 Score=172.55 Aligned_cols=239 Identities=16% Similarity=0.217 Sum_probs=190.9
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCC
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDF 80 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~ 80 (434)
|+++.|+++|++|++.. .++.|.|||+.+.+.++.+..+ |...|-+++|. +..+.++ .++.|.++|+...
T Consensus 220 vtSv~ws~~G~~LavG~-----~~g~v~iwD~~~~k~~~~~~~~--h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~ 290 (484)
T KOG0305|consen 220 VTSVKWSPDGSHLAVGT-----SDGTVQIWDVKEQKKTRTLRGS--HASRVGSLAWN--SSVLSSGSRDGKILNHDVRIS 290 (484)
T ss_pred eEEEEECCCCCEEEEee-----cCCeEEEEehhhccccccccCC--cCceeEEEecc--CceEEEecCCCcEEEEEEecc
Confidence 78999999999999988 8999999999998888887763 33778899998 6666666 4679999998765
Q ss_pred CCcee-eeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEE
Q 013871 81 PKGIL-YRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAV 159 (434)
Q Consensus 81 ~~~~~-~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~ 159 (434)
..... ...|.+.|..++|+++ +..+| ++|.++.+.||+... ..++.....|++.+..+.|.|--..||..
T Consensus 291 ~~~~~~~~~H~qeVCgLkws~d-~~~lA-----SGgnDN~~~Iwd~~~---~~p~~~~~~H~aAVKA~awcP~q~~lLAs 361 (484)
T KOG0305|consen 291 QHVVSTLQGHRQEVCGLKWSPD-GNQLA-----SGGNDNVVFIWDGLS---PEPKFTFTEHTAAVKALAWCPWQSGLLAT 361 (484)
T ss_pred hhhhhhhhcccceeeeeEECCC-CCeec-----cCCCccceEeccCCC---ccccEEEeccceeeeEeeeCCCccCceEE
Confidence 43222 5567778999999999 56666 688999999999966 78888999999999999999987777766
Q ss_pred EEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-cceeEEe--CC
Q 013871 160 AQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL--GS 236 (434)
Q Consensus 160 ~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~-~~~~~~~--~~ 236 (434)
.....|...+.| ++..+ ...-.+.....|.++.|++..++|+...|+.+..|+||+.- -..+..+ |.
T Consensus 362 GGGs~D~~i~fw---------n~~~g-~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~ 431 (484)
T KOG0305|consen 362 GGGSADRCIKFW---------NTNTG-ARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHT 431 (484)
T ss_pred cCCCcccEEEEE---------EcCCC-cEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCc
Confidence 555456555443 33333 33334455789999999999999999999999999999874 3334444 88
Q ss_pred cCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC
Q 013871 237 GPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG 271 (434)
Q Consensus 237 ~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~ 271 (434)
..|..+++||||..+++|+ .|.+++||++-+.
T Consensus 432 ~RVl~la~SPdg~~i~t~a---~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 432 SRVLYLALSPDGETIVTGA---ADETLRFWNLFDE 463 (484)
T ss_pred ceeEEEEECCCCCEEEEec---ccCcEEeccccCC
Confidence 8999999999999999999 4459999997653
No 65
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=1.4e-19 Score=172.36 Aligned_cols=299 Identities=17% Similarity=0.217 Sum_probs=197.2
Q ss_pred CcceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEE--EecCCeEEEEeCC
Q 013871 1 MLLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVAC--RMATNEIQFFDTT 78 (434)
Q Consensus 1 ~V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la--~~~~~~i~v~~~~ 78 (434)
+|++|+..|.|.+|++++ .|++|+||.+.||.|++++... ..+.|++|+|.+..++ .+.++.+.|-+..
T Consensus 402 ~Vr~iSvdp~G~wlasGs-----dDGtvriWEi~TgRcvr~~~~d----~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~ 472 (733)
T KOG0650|consen 402 LVRSISVDPSGEWLASGS-----DDGTVRIWEIATGRCVRTVQFD----SEIRSVAWNPLSDLCVLAVAVGECVLIVNPI 472 (733)
T ss_pred eEEEEEecCCcceeeecC-----CCCcEEEEEeecceEEEEEeec----ceeEEEEecCCCCceeEEEEecCceEEeCcc
Confidence 589999999999999988 8999999999999999998876 5788999999886544 4445555555532
Q ss_pred CCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCC-CCceeeeeecccceeEEEECCCCCeEE
Q 013871 79 DFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQ-SQPLARRSFFRCSTVQLNWNRGSTGLL 157 (434)
Q Consensus 79 ~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~-~~~i~~~~~~~~~~~~~~ws~~G~~l~ 157 (434)
-+..... ....+-... .|. ....++.+-.|.-....+ ...++..--+...+.++.|+.+|.+|+
T Consensus 473 ~G~~~e~-~~t~ell~~---~~~-----------~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYla 537 (733)
T KOG0650|consen 473 FGDRLEV-GPTKELLAS---APN-----------ESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLA 537 (733)
T ss_pred ccchhhh-cchhhhhhc---CCC-----------ccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEE
Confidence 2211110 000000000 000 011122334444332110 112333334556778999999999987
Q ss_pred EEEEecccccCceeecceeEEEEeeCCcceeeeecC-CCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-cceeEEe-
Q 013871 158 AVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR-KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL- 234 (434)
Q Consensus 158 ~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~-~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~-~~~~~~~- 234 (434)
++.. +...++.+ ||.+. ......++. ..|.|..+.|+|...+|+|++. ..|+|||+. +..+..+
T Consensus 538 tV~~---~~~~~~Vl----iHQLS---K~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq---~~vRiYdL~kqelvKkL~ 604 (733)
T KOG0650|consen 538 TVMP---DSGNKSVL----IHQLS---KRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ---RSVRIYDLSKQELVKKLL 604 (733)
T ss_pred Eecc---CCCcceEE----EEecc---cccccCchhhcCCceeEEEecCCCceEEEEec---cceEEEehhHHHHHHHHh
Confidence 7643 23333221 44442 223334554 3689999999999999998654 489999984 5555555
Q ss_pred -CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC-EEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEE
Q 013871 235 -GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG-KQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIK 310 (434)
Q Consensus 235 -~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~-~~i~~~~~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~ 310 (434)
+...+.+++.+|.|..|+++++++ .|..+|++-. +...++..| .+..+++++.-..|++|+. |+++.
T Consensus 605 tg~kwiS~msihp~GDnli~gs~d~---k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sd------Dgtv~ 675 (733)
T KOG0650|consen 605 TGSKWISSMSIHPNGDNLILGSYDK---KMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSD------DGTVI 675 (733)
T ss_pred cCCeeeeeeeecCCCCeEEEecCCC---eeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecC------CCcEE
Confidence 345678899999999999999554 9999998743 555555555 5566999999999999999 99999
Q ss_pred EEee---c----Cceeeee-----ec----ccceeeEEEcCCCCCCCCchh
Q 013871 311 IFHH---N----GSLFFKK-----MF----DKLFQAEWKPVSPDKFGDISE 345 (434)
Q Consensus 311 iw~~---~----g~~~~~~-----~~----~~~~~~~w~p~~~~~~~~~~~ 345 (434)
|++- + .-++.-. +. -.+.++.|+|+.+.||+++.+
T Consensus 676 Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd 726 (733)
T KOG0650|consen 676 VFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGAD 726 (733)
T ss_pred EEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCC
Confidence 9983 1 1111111 11 137788899999999998643
No 66
>PTZ00420 coronin; Provisional
Probab=99.83 E-value=2.3e-17 Score=165.40 Aligned_cols=265 Identities=10% Similarity=0.159 Sum_probs=170.5
Q ss_pred ecCCCcEEEE-EecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCC-CcEEEEec-CCeEEEEeCCCCCCc
Q 013871 7 CLRVGLIIQT-FQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSD-EAVACRMA-TNEIQFFDTTDFPKG 83 (434)
Q Consensus 7 fSP~g~~L~t-~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d-~~~la~~~-~~~i~v~~~~~~~~~ 83 (434)
++..++|++. |....+..++.|+||++.....+..+.++ ...+.+++|+|+ +.+||+++ |++|+||++......
T Consensus 34 ia~n~~~~A~~w~~~gGG~~gvI~L~~~~r~~~v~~L~gH---~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~ 110 (568)
T PTZ00420 34 IACSSGFVAVPWEVEGGGLIGAIRLENQMRKPPVIKLKGH---TSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDES 110 (568)
T ss_pred EeeCCCeEEEEEEcCCCCceeEEEeeecCCCceEEEEcCC---CCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcc
Confidence 3445566554 44344556788999998777777777654 367779999996 78888874 679999998753210
Q ss_pred eeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEec
Q 013871 84 ILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSD 163 (434)
Q Consensus 84 ~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~ 163 (434)
. ..+ ..++.....|...+..+.|+|++..+++.++
T Consensus 111 ~---------~~i----------------------------------~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS-- 145 (568)
T PTZ00420 111 V---------KEI----------------------------------KDPQCILKGHKKKISIIDWNPMNYYIMCSSG-- 145 (568)
T ss_pred c---------ccc----------------------------------ccceEEeecCCCcEEEEEECCCCCeEEEEEe--
Confidence 0 000 0111122234456678999999987655433
Q ss_pred ccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccc-eeEEe--CCcCee
Q 013871 164 VDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PILEL--GSGPYN 240 (434)
Q Consensus 164 ~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~-~~~~~--~~~~~~ 240 (434)
.|.+.+. |.+ ... .....+.+...|.+++|+|+|..|+ +++.++.++|||++.. .+.++ |.+.+.
T Consensus 146 ~DgtIrI-------WDl--~tg-~~~~~i~~~~~V~SlswspdG~lLa--t~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~ 213 (568)
T PTZ00420 146 FDSFVNI-------WDI--ENE-KRAFQINMPKKLSSLKWNIKGNLLS--GTCVGKHMHIIDPRKQEIASSFHIHDGGKN 213 (568)
T ss_pred CCCeEEE-------EEC--CCC-cEEEEEecCCcEEEEEECCCCCEEE--EEecCCEEEEEECCCCcEEEEEecccCCce
Confidence 3444443 322 222 2222333457899999999999887 4667899999999744 44444 555543
Q ss_pred E-----EEECCCCCeEEEEecCCC-CCeEEEEEccC-CEEEEEeeCC---CceEEEEC-CCCCEEEEEEcCCceeeCCcE
Q 013871 241 T-----VRWNPKGKFLCLAGFGNL-PGDMAFWDYVD-GKQLGTTRAE---CSVTSEWS-PDGRYFMTATTAPRLQIDNGI 309 (434)
Q Consensus 241 ~-----i~~SP~g~~l~~~~~~~~-~g~i~iwd~~~-~~~i~~~~~~---~~~~~~ws-pdg~~l~tas~~prl~~D~~i 309 (434)
+ ..|++++.+|+++|++.. ++.|.|||+++ .+.+...... .+....|. ++|.++++|+. |+.|
T Consensus 214 s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkG------D~tI 287 (568)
T PTZ00420 214 TKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKG------DGNC 287 (568)
T ss_pred eEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEEC------CCeE
Confidence 3 235799999999887642 35899999985 4555544332 33334554 45889999988 9999
Q ss_pred EEEeecCceeeee----ecccceeeEEEcCCC
Q 013871 310 KIFHHNGSLFFKK----MFDKLFQAEWKPVSP 337 (434)
Q Consensus 310 ~iw~~~g~~~~~~----~~~~~~~~~w~p~~~ 337 (434)
++|++....++.. ....+..++|.|.-.
T Consensus 288 r~~e~~~~~~~~l~~~~s~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 288 RYYQHSLGSIRKVNEYKSCSPFRSFGFLPKQI 319 (568)
T ss_pred EEEEccCCcEEeecccccCCCccceEEccccc
Confidence 9999965433322 123466778888654
No 67
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=9.6e-19 Score=157.78 Aligned_cols=262 Identities=14% Similarity=0.161 Sum_probs=194.6
Q ss_pred CCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCC
Q 013871 50 TTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKD 128 (434)
Q Consensus 50 ~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~ 128 (434)
..+..+-|.|+.-.+++++ +.+|++||..+.+.....+.|...+.+++++..+ ..++.. ..+-.+.+|+....
T Consensus 109 ~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~G-k~l~tc-----SsDl~~~LWd~~~~ 182 (406)
T KOG0295|consen 109 SSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASG-KYLATC-----SSDLSAKLWDFDTF 182 (406)
T ss_pred cceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCc-cEEEec-----CCccchhheeHHHH
Confidence 4555778899999998885 5699999999887766678888889999999884 444432 22234899998764
Q ss_pred CCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCC
Q 013871 129 LQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGS 208 (434)
Q Consensus 129 ~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~ 208 (434)
.+.+.....+...+.++.+-|.|.+|+. ...|.+.+.|.-.++ |.+.+... +..-|+-++.+.||.
T Consensus 183 --~~c~ks~~gh~h~vS~V~f~P~gd~ilS---~srD~tik~We~~tg-~cv~t~~~--------h~ewvr~v~v~~DGt 248 (406)
T KOG0295|consen 183 --FRCIKSLIGHEHGVSSVFFLPLGDHILS---CSRDNTIKAWECDTG-YCVKTFPG--------HSEWVRMVRVNQDGT 248 (406)
T ss_pred --HHHHHHhcCcccceeeEEEEecCCeeee---cccccceeEEecccc-eeEEeccC--------chHhEEEEEecCCee
Confidence 4566667778888889999999988654 446777776643322 32222222 356889999999999
Q ss_pred EEEEEEccCCCeEEEEeccc---ceeEEeCCcCeeEEEECCC---------------CCeEEEEecCCCCCeEEEEEccC
Q 013871 209 EFAVVYGFMPASATIFNKKC---RPILELGSGPYNTVRWNPK---------------GKFLCLAGFGNLPGDMAFWDYVD 270 (434)
Q Consensus 209 ~~av~~g~~~~~v~l~d~~~---~~~~~~~~~~~~~i~~SP~---------------g~~l~~~~~~~~~g~i~iwd~~~ 270 (434)
.|| +++.+.++++|-+.. ......|..++.+++|-|. |+++.+++ -|++|++||+.+
T Consensus 249 i~A--s~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~S---rDktIk~wdv~t 323 (406)
T KOG0295|consen 249 IIA--SCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGS---RDKTIKIWDVST 323 (406)
T ss_pred EEE--ecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeec---ccceEEEEeccC
Confidence 998 688889999997753 4555668899999999874 24666666 457999999999
Q ss_pred CEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec-Cceeeeeeccc--ceeeEEEcCCCCCCCC
Q 013871 271 GKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLFFKKMFDK--LFQAEWKPVSPDKFGD 342 (434)
Q Consensus 271 ~~~i~~~~~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~-g~~~~~~~~~~--~~~~~w~p~~~~~~~~ 342 (434)
+.++.++.+| .+..++|+|.|+||+++.. |++++|||+. ++++...+..+ +..+.+.-..+++.+.
T Consensus 324 g~cL~tL~ghdnwVr~~af~p~Gkyi~ScaD------Dktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTG 394 (406)
T KOG0295|consen 324 GMCLFTLVGHDNWVRGVAFSPGGKYILSCAD------DKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTG 394 (406)
T ss_pred CeEEEEEecccceeeeeEEcCCCeEEEEEec------CCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEec
Confidence 9999999988 5556999999999999999 9999999995 45555554443 3455555555544443
No 68
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.83 E-value=1.9e-19 Score=154.71 Aligned_cols=273 Identities=16% Similarity=0.238 Sum_probs=201.7
Q ss_pred cceEEec---CCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeC
Q 013871 2 LLLLTCL---RVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDT 77 (434)
Q Consensus 2 V~~l~fS---P~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~ 77 (434)
|..|+|| |+|-||++.+ .|++=.+-+-.+|.-+.+|.++.. ..| ......+-...|++. |-+-+|||.
T Consensus 17 vvdl~~s~itp~g~flisa~-----kd~~pmlr~g~tgdwigtfeghkg--avw-~~~l~~na~~aasaaadftakvw~a 88 (334)
T KOG0278|consen 17 VVDLAFSPITPDGYFLISAS-----KDGKPMLRNGDTGDWIGTFEGHKG--AVW-SATLNKNATRAASAAADFTAKVWDA 88 (334)
T ss_pred eeEEeccCCCCCceEEEEec-----cCCCchhccCCCCCcEEeeeccCc--cee-eeecCchhhhhhhhcccchhhhhhh
Confidence 4567887 6899999999 677777777789999999998764 556 445555666667664 448999997
Q ss_pred CCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEE
Q 013871 78 TDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLL 157 (434)
Q Consensus 78 ~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~ 157 (434)
-....... -.|..-|+.++|+.+...++ +++....+|||++... ..+......+...+..+.|-...+.|+
T Consensus 89 ~tgdelhs-f~hkhivk~~af~~ds~~ll------tgg~ekllrvfdln~p--~App~E~~ghtg~Ir~v~wc~eD~~iL 159 (334)
T KOG0278|consen 89 VTGDELHS-FEHKHIVKAVAFSQDSNYLL------TGGQEKLLRVFDLNRP--KAPPKEISGHTGGIRTVLWCHEDKCIL 159 (334)
T ss_pred hhhhhhhh-hhhhheeeeEEecccchhhh------ccchHHHhhhhhccCC--CCCchhhcCCCCcceeEEEeccCceEE
Confidence 65432211 11233478899999854444 3567778899998664 566666777888888888987777654
Q ss_pred EEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-ceeEEe-C
Q 013871 158 AVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL-G 235 (434)
Q Consensus 158 ~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~-~~~~~~-~ 235 (434)
.. ..|++.+.| ... .+ .....|..+.+|.++..++||+++.+.+|. .|.+||.+. ..+.++ -
T Consensus 160 SS---add~tVRLW-------D~r--Tg-t~v~sL~~~s~VtSlEvs~dG~ilTia~gs---sV~Fwdaksf~~lKs~k~ 223 (334)
T KOG0278|consen 160 SS---ADDKTVRLW-------DHR--TG-TEVQSLEFNSPVTSLEVSQDGRILTIAYGS---SVKFWDAKSFGLLKSYKM 223 (334)
T ss_pred ee---ccCCceEEE-------Eec--cC-cEEEEEecCCCCcceeeccCCCEEEEecCc---eeEEeccccccceeeccC
Confidence 43 255666544 322 22 222334447899999999999999987765 899999864 555555 3
Q ss_pred CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEe-eCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEE
Q 013871 236 SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTT-RAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIF 312 (434)
Q Consensus 236 ~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~-~~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw 312 (434)
...|++...+|+..+++.|| .++.++.||..+++.+..+ .+| .+-++.|||||+..++++. |++|+||
T Consensus 224 P~nV~SASL~P~k~~fVaGg---ed~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSE------DGTirlW 294 (334)
T KOG0278|consen 224 PCNVESASLHPKKEFFVAGG---EDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSE------DGTIRLW 294 (334)
T ss_pred ccccccccccCCCceEEecC---cceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCC------CceEEEE
Confidence 56788999999998888887 6789999999999988886 444 4455999999999999999 9999999
Q ss_pred eecC
Q 013871 313 HHNG 316 (434)
Q Consensus 313 ~~~g 316 (434)
..+-
T Consensus 295 Qt~~ 298 (334)
T KOG0278|consen 295 QTTP 298 (334)
T ss_pred EecC
Confidence 9753
No 69
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.83 E-value=3.8e-18 Score=150.58 Aligned_cols=263 Identities=14% Similarity=0.142 Sum_probs=177.1
Q ss_pred cceEEecCCCcEEE-EEecCCCCCCCcEEEEEcCC-CcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCC
Q 013871 2 LLLLTCLRVGLIIQ-TFQKSSTPQEKNVILWKTET-GEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTT 78 (434)
Q Consensus 2 V~~l~fSP~g~~L~-t~~~~~~~~d~~v~iWd~~~-g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~ 78 (434)
|.+|+|||...+|+ ..+ .|++|++|+++. |..+..-... +...+.+++|+.||..++.+ .|+++++||+.
T Consensus 30 IS~l~FSP~~~~~~~A~S-----WD~tVR~wevq~~g~~~~ka~~~--~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~ 102 (347)
T KOG0647|consen 30 ISALAFSPQADNLLAAGS-----WDGTVRIWEVQNSGQLVPKAQQS--HDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLA 102 (347)
T ss_pred hheeEeccccCceEEecc-----cCCceEEEEEecCCcccchhhhc--cCCCeEEEEEccCCceEEeeccCCceEEEEcc
Confidence 78999999655555 444 899999999976 5544432222 34677899999999877776 68899999998
Q ss_pred CCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEE
Q 013871 79 DFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLA 158 (434)
Q Consensus 79 ~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~ 158 (434)
+... .....|...|+.+.|-+.....+.+ ++..+.+++.||... ..++.+..+.. .+..+. - -.-+++
T Consensus 103 S~Q~-~~v~~Hd~pvkt~~wv~~~~~~cl~----TGSWDKTlKfWD~R~---~~pv~t~~LPe-RvYa~D--v-~~pm~v 170 (347)
T KOG0647|consen 103 SGQV-SQVAAHDAPVKTCHWVPGMNYQCLV----TGSWDKTLKFWDTRS---SNPVATLQLPE-RVYAAD--V-LYPMAV 170 (347)
T ss_pred CCCe-eeeeecccceeEEEEecCCCcceeE----ecccccceeecccCC---CCeeeeeeccc-eeeehh--c-cCceeE
Confidence 8653 5566778889999999875422221 456778999999987 67777665432 111110 0 012333
Q ss_pred EEEecccccCceeecceeEEEEeeCCc--ceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-ce----e
Q 013871 159 VAQSDVDKTNQSYYGESKLNYLTTDGT--HEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RP----I 231 (434)
Q Consensus 159 ~~~~~~d~~~~~~~g~~~l~~l~~~~~--~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~-~~----~ 231 (434)
++.. ++ .|..+.+.+. ...++....+-.+.+++..+|..-+++ |...|++.+..+.. ++ .
T Consensus 171 Vata--~r---------~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~al--GsiEGrv~iq~id~~~~~~nFt 237 (347)
T KOG0647|consen 171 VATA--ER---------HIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFAL--GSIEGRVAIQYIDDPNPKDNFT 237 (347)
T ss_pred EEec--CC---------cEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEe--eeecceEEEEecCCCCccCcee
Confidence 3222 11 2222222111 111222222557789999998888875 78888998887643 22 2
Q ss_pred EEeCC---------cCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEc
Q 013871 232 LELGS---------GPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATT 299 (434)
Q Consensus 232 ~~~~~---------~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~ 299 (434)
+..|. -.||+|+|+|.-..|+++| .||++.|||.+....+...+.+ .++.+.|+.+|.+++-|..
T Consensus 238 FkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaG---sDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~g 313 (347)
T KOG0647|consen 238 FKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAG---SDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYALG 313 (347)
T ss_pred EEEeccCCCCCCceEEecceEeecccceEEEec---CCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEee
Confidence 22232 2578999999999999999 6789999998877666654443 6777999999999999887
No 70
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.82 E-value=8.2e-18 Score=151.90 Aligned_cols=271 Identities=14% Similarity=0.157 Sum_probs=199.1
Q ss_pred EEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCC
Q 013871 39 VYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSP 117 (434)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~ 117 (434)
+.+|..+ ...+-++.-+|+.+++|+++ |+.-++|+..+.........|.+.|.++.||-+ +.++| +++..
T Consensus 57 ~~tF~~H---~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fshd-gtlLA-----TGdms 127 (399)
T KOG0296|consen 57 LVTFDKH---TDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHD-GTLLA-----TGDMS 127 (399)
T ss_pred eeehhhc---CCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccC-ceEEE-----ecCCC
Confidence 4566554 36666899999999999985 679999999987766667778889999999998 66776 47888
Q ss_pred ceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCC
Q 013871 118 ASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGP 197 (434)
Q Consensus 118 ~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~ 197 (434)
+.|+||...+ +........--.+..-|+|+|.+..|+..+ .| | .+|.+.+.....+.+-..+..+
T Consensus 128 G~v~v~~~st---g~~~~~~~~e~~dieWl~WHp~a~illAG~---~D-------G--svWmw~ip~~~~~kv~~Gh~~~ 192 (399)
T KOG0296|consen 128 GKVLVFKVST---GGEQWKLDQEVEDIEWLKWHPRAHILLAGS---TD-------G--SVWMWQIPSQALCKVMSGHNSP 192 (399)
T ss_pred ccEEEEEccc---CceEEEeecccCceEEEEecccccEEEeec---CC-------C--cEEEEECCCcceeeEecCCCCC
Confidence 9999999987 555554444456777899999877654421 11 2 2455555554466666667889
Q ss_pred eEEEEECcCCCEEEEEEccCCCeEEEEecc-cceeEEeC-----------------------------------------
Q 013871 198 VHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILELG----------------------------------------- 235 (434)
Q Consensus 198 i~~v~wspdg~~~av~~g~~~~~v~l~d~~-~~~~~~~~----------------------------------------- 235 (434)
+.+=.|.|||++++ +++.+++|++||.+ +.+++.+.
T Consensus 193 ct~G~f~pdGKr~~--tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~ 270 (399)
T KOG0296|consen 193 CTCGEFIPDGKRIL--TGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNC 270 (399)
T ss_pred cccccccCCCceEE--EEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEe
Confidence 99999999999999 57889999999985 44444321
Q ss_pred ------------CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC-CceEEEECCCCCEEEEEEcCCc
Q 013871 236 ------------SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-CSVTSEWSPDGRYFMTATTAPR 302 (434)
Q Consensus 236 ------------~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-~~~~~~wspdg~~l~tas~~pr 302 (434)
...+.++.+.|...-|-++.-|.++|+|.|||+...+....+.+. .++.+.|-+ ..+|++++.
T Consensus 271 ~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~--- 346 (399)
T KOG0296|consen 271 NNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTACA--- 346 (399)
T ss_pred cCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC-cchheeecc---
Confidence 001122333343332222222338899999999988777777765 677799999 789999999
Q ss_pred eeeCCcEEEEee-cCceeeee--ecccceeeEEEcCCCCCCCC
Q 013871 303 LQIDNGIKIFHH-NGSLFFKK--MFDKLFQAEWKPVSPDKFGD 342 (434)
Q Consensus 303 l~~D~~i~iw~~-~g~~~~~~--~~~~~~~~~w~p~~~~~~~~ 342 (434)
|+.|++||. +|++++.. |...++++...|+...+++.
T Consensus 347 ---~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~ 386 (399)
T KOG0296|consen 347 ---NGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTV 386 (399)
T ss_pred ---CceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEe
Confidence 999999998 78887665 67789999999998777664
No 71
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.82 E-value=7.9e-18 Score=164.34 Aligned_cols=306 Identities=13% Similarity=0.160 Sum_probs=225.4
Q ss_pred ceEEecCCCc---EEEEEecCCCCCCCcEEEEEcCC-CcE------EEEEeecCcCCCCCCeeeecCCCcEEEEecCCeE
Q 013871 3 LLLTCLRVGL---IIQTFQKSSTPQEKNVILWKTET-GEA------VYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEI 72 (434)
Q Consensus 3 ~~l~fSP~g~---~L~t~~~~~~~~d~~v~iWd~~~-g~~------~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i 72 (434)
.++++-|.+. -|++. .+..+.+|.++. +.. +..+.- ..|+..++.+++|.|...++++.+++|
T Consensus 324 ks~dv~~~~~~~~~lv~l------~nNtv~~ysl~~s~~~~p~~~~~~~i~~-~GHR~dVRsl~vS~d~~~~~Sga~~Si 396 (888)
T KOG0306|consen 324 KSFDVTPSGGTENTLVLL------ANNTVEWYSLENSGKTSPEADRTSNIEI-GGHRSDVRSLCVSSDSILLASGAGESI 396 (888)
T ss_pred eEEEEEecCCcceeEEEe------ecCceEEEEeccCCCCCccccccceeee-ccchhheeEEEeecCceeeeecCCCcE
Confidence 3455555543 34442 357788887754 221 222221 225588999999999999999999999
Q ss_pred EEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCC
Q 013871 73 QFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRG 152 (434)
Q Consensus 73 ~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~ 152 (434)
.||+...... ..++...-+-...|-|+ +..|.+ +...|.+.+|++.+ ...+-+...|.+.+-.+.-+||
T Consensus 397 kiWn~~t~kc--iRTi~~~y~l~~~Fvpg-d~~Iv~-----G~k~Gel~vfdlaS---~~l~Eti~AHdgaIWsi~~~pD 465 (888)
T KOG0306|consen 397 KIWNRDTLKC--IRTITCGYILASKFVPG-DRYIVL-----GTKNGELQVFDLAS---ASLVETIRAHDGAIWSISLSPD 465 (888)
T ss_pred EEEEccCcce--eEEeccccEEEEEecCC-CceEEE-----eccCCceEEEEeeh---hhhhhhhhccccceeeeeecCC
Confidence 9999987543 34555556667778887 444432 35567899999987 5666666788888899999999
Q ss_pred CCeEEEEEEecccccCceeecceeEEEEeeCCcceeeee------cCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEec
Q 013871 153 STGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVP------LRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNK 226 (434)
Q Consensus 153 G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~------l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~ 226 (434)
++..+. ...|++.+.|.-+ +..+..|.....+. ++-+..|.++.+||||+++|| +--|+++.+|-+
T Consensus 466 ~~g~vT---~saDktVkfWdf~---l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaV--sLLdnTVkVyfl 537 (888)
T KOG0306|consen 466 NKGFVT---GSADKTVKFWDFK---LVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAV--SLLDNTVKVYFL 537 (888)
T ss_pred CCceEE---ecCCcEEEEEeEE---EEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEE--EeccCeEEEEEe
Confidence 998543 3478999887521 11222333222222 333678999999999999996 778899999988
Q ss_pred ccceeE-Ee--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCC
Q 013871 227 KCRPIL-EL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAP 301 (434)
Q Consensus 227 ~~~~~~-~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~p 301 (434)
..-..+ ++ |.-||.|+..|||++++++++.| .+|+||-++=|.+-..+-+| .++.+.|-|+...|.+++.
T Consensus 538 DtlKFflsLYGHkLPV~smDIS~DSklivTgSAD---KnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gK-- 612 (888)
T KOG0306|consen 538 DTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSAD---KNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGK-- 612 (888)
T ss_pred cceeeeeeecccccceeEEeccCCcCeEEeccCC---CceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecC--
Confidence 755443 33 78999999999999999999955 59999999989888888776 5678999999999999999
Q ss_pred ceeeCCcEEEEeecCc-e--eeeeecccceeeEEEcCCCCCCCCc
Q 013871 302 RLQIDNGIKIFHHNGS-L--FFKKMFDKLFQAEWKPVSPDKFGDI 343 (434)
Q Consensus 302 rl~~D~~i~iw~~~g~-~--~~~~~~~~~~~~~w~p~~~~~~~~~ 343 (434)
|+.||-||-..- + ....+..++|+++-.|.+..+++..
T Consensus 613 ----D~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~s 653 (888)
T KOG0306|consen 613 ----DGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSS 653 (888)
T ss_pred ----cceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEecc
Confidence 999999985432 2 2334667999999999999988875
No 72
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.82 E-value=9.4e-20 Score=163.23 Aligned_cols=249 Identities=13% Similarity=0.204 Sum_probs=174.1
Q ss_pred CCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCC
Q 013871 24 QEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAP 102 (434)
Q Consensus 24 ~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~ 102 (434)
.|++|+|||..+.++++.+.++. ..+.|++| |++.+++++ |.+|+|||.++.+.....-.|.+.|-.+.|+.+
T Consensus 215 rDnTikiWD~n~~~c~~~L~GHt---GSVLCLqy--d~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~ng- 288 (499)
T KOG0281|consen 215 RDNTIKIWDKNSLECLKILTGHT---GSVLCLQY--DERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSNG- 288 (499)
T ss_pred ccCceEEeccccHHHHHhhhcCC---CcEEeeec--cceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeCC-
Confidence 78999999999999998888764 67778887 778999885 569999999998765555667788888888853
Q ss_pred CCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEee
Q 013871 103 GSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTT 182 (434)
Q Consensus 103 ~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~ 182 (434)
.++. ...+..+.+|++...+.......+-+|.+.+..+.|+.. + +.+...|.+.+.|...+ .+++.+
T Consensus 289 -~mvt------cSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~k--y---IVsASgDRTikvW~~st-~efvRt 355 (499)
T KOG0281|consen 289 -YMVT------CSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK--Y---IVSASGDRTIKVWSTST-CEFVRT 355 (499)
T ss_pred -EEEE------ecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccc--e---EEEecCCceEEEEeccc-eeeehh
Confidence 3332 245678999999763211112234467777777777643 3 33344678888775543 244443
Q ss_pred CCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeE---EeCCcCeeEEEECCCCCeEEEEecCCC
Q 013871 183 DGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPIL---ELGSGPYNTVRWNPKGKFLCLAGFGNL 259 (434)
Q Consensus 183 ~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~---~~~~~~~~~i~~SP~g~~l~~~~~~~~ 259 (434)
..++ ...|-++++. | .|+| +|+.|.+|++||+.+.... +-|..-+.++.|. .+.|++|+ .
T Consensus 356 l~gH--------kRGIAClQYr--~-rlvV-SGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSGa---Y 418 (499)
T KOG0281|consen 356 LNGH--------KRGIACLQYR--D-RLVV-SGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGA---Y 418 (499)
T ss_pred hhcc--------cccceehhcc--C-eEEE-ecCCCceEEEEeccccHHHHHHhchHHhhhheeec--Cceeeecc---c
Confidence 3333 5567777764 4 3444 7999999999999865432 3377889999995 57889998 5
Q ss_pred CCeEEEEEccCCEE---------EEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecC
Q 013871 260 PGDMAFWDYVDGKQ---------LGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG 316 (434)
Q Consensus 260 ~g~i~iwd~~~~~~---------i~~~~~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g 316 (434)
||+|+|||+..+.. +.+...| .+..+.| |...|++++. |.+|.|||+..
T Consensus 419 DGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssH------ddtILiWdFl~ 478 (499)
T KOG0281|consen 419 DGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSH------DDTILIWDFLN 478 (499)
T ss_pred cceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccC------CCeEEEEEcCC
Confidence 67999999986532 2222223 2333555 6678888888 99999999854
No 73
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.82 E-value=1.5e-17 Score=150.84 Aligned_cols=269 Identities=14% Similarity=0.246 Sum_probs=190.7
Q ss_pred ceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeec-CCCc--EEEEe-cCCeEEEEeCC
Q 013871 3 LLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFS-SDEA--VACRM-ATNEIQFFDTT 78 (434)
Q Consensus 3 ~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S-~d~~--~la~~-~~~~i~v~~~~ 78 (434)
.++.-. +++++|.+ .|+.++||| ..|++..++.++. ..+..+.|- +|.. .|+++ .|.++++|..+
T Consensus 109 Ssv~~~--~~~Iltgs-----YDg~~riWd-~~Gk~~~~~~Ght---~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~ 177 (423)
T KOG0313|consen 109 SSVKGA--SKWILTGS-----YDGTSRIWD-LKGKSIKTIVGHT---GPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWN 177 (423)
T ss_pred hhhccc--CceEEEee-----cCCeeEEEe-cCCceEEEEecCC---cceeeeEEEecCCccceEEEecCCceEEEEEec
Confidence 344444 78999988 899999999 5688888888764 566556663 3433 45555 56799999987
Q ss_pred CCCCc----eeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCC----------------------CCC
Q 013871 79 DFPKG----ILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDL----------------------QSQ 132 (434)
Q Consensus 79 ~~~~~----~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~----------------------~~~ 132 (434)
..+.. ...+.|...|.+++..+++ ..++ ++..+..+.||+.+... .+.
T Consensus 178 ~~~~~~~~~~~~~GHk~~V~sVsv~~sg-tr~~-----SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~ 251 (423)
T KOG0313|consen 178 VGENKVKALKVCRGHKRSVDSVSVDSSG-TRFC-----SGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRT 251 (423)
T ss_pred CchhhhhHHhHhcccccceeEEEecCCC-CeEE-----eecccceeeecccCCCccccccccchhhhhhhhhhhcccccC
Confidence 65432 1233666789999988874 3333 34566788888843210 245
Q ss_pred ceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEE
Q 013871 133 PLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAV 212 (434)
Q Consensus 133 ~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av 212 (434)
++..+..|...+..+.|++.+. +.+..-|.+.+.| .+.+.+.. ..+.....+.++..+|..+.++
T Consensus 252 P~vtl~GHt~~Vs~V~w~d~~v----~yS~SwDHTIk~W-------Dletg~~~---~~~~~~ksl~~i~~~~~~~Ll~- 316 (423)
T KOG0313|consen 252 PLVTLEGHTEPVSSVVWSDATV----IYSVSWDHTIKVW-------DLETGGLK---STLTTNKSLNCISYSPLSKLLA- 316 (423)
T ss_pred ceEEecccccceeeEEEcCCCc----eEeecccceEEEE-------Eeecccce---eeeecCcceeEeecccccceee-
Confidence 6677888999999999998332 2233467777744 44433332 2222367889999999888777
Q ss_pred EEccCCCeEEEEecccc----eeEEe--CCcCeeEEEECCCCCe-EEEEecCCCCCeEEEEEccCCE-EEEEeeCC--Cc
Q 013871 213 VYGFMPASATIFNKKCR----PILEL--GSGPYNTVRWNPKGKF-LCLAGFGNLPGDMAFWDYVDGK-QLGTTRAE--CS 282 (434)
Q Consensus 213 ~~g~~~~~v~l~d~~~~----~~~~~--~~~~~~~i~~SP~g~~-l~~~~~~~~~g~i~iwd~~~~~-~i~~~~~~--~~ 282 (434)
+|+.+..+++||-+.. ..++| |+.-|.++.|||...+ |++++ .|+++++||+++-+ .+..+.+| .+
T Consensus 317 -~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S---~D~t~klWDvRS~k~plydI~~h~DKv 392 (423)
T KOG0313|consen 317 -SGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGS---YDNTVKLWDVRSTKAPLYDIAGHNDKV 392 (423)
T ss_pred -ecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEe---cCCeEEEEEeccCCCcceeeccCCceE
Confidence 7899999999998732 22334 7889999999998875 55556 45699999999776 78888777 45
Q ss_pred eEEEECCCCCEEEEEEcCCceeeCCcEEEEee
Q 013871 283 VTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH 314 (434)
Q Consensus 283 ~~~~wspdg~~l~tas~~prl~~D~~i~iw~~ 314 (434)
..+.|+ +|.+|++|+. |++++|+..
T Consensus 393 l~vdW~-~~~~IvSGGa------D~~l~i~~~ 417 (423)
T KOG0313|consen 393 LSVDWN-EGGLIVSGGA------DNKLRIFKG 417 (423)
T ss_pred EEEecc-CCceEEeccC------cceEEEecc
Confidence 668998 5679999999 999999875
No 74
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.82 E-value=4.3e-18 Score=150.07 Aligned_cols=227 Identities=14% Similarity=0.207 Sum_probs=165.9
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEE-ec-CCeEEEEeCCC
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACR-MA-TNEIQFFDTTD 79 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~-~~-~~~i~v~~~~~ 79 (434)
|..+.|.+||+.|++++ .|++|+.||+++|++++.+..+. .-+..+.=+.-|..++. +. |+++++||+..
T Consensus 93 VM~l~~~~d~s~i~S~g-----tDk~v~~wD~~tG~~~rk~k~h~---~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~ 164 (338)
T KOG0265|consen 93 VMELHGMRDGSHILSCG-----TDKTVRGWDAETGKRIRKHKGHT---SFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRK 164 (338)
T ss_pred eEeeeeccCCCEEEEec-----CCceEEEEecccceeeehhcccc---ceeeecCccccCCeEEEecCCCceEEEEeecc
Confidence 67789999999999999 89999999999999999887653 55555564445555554 44 46999999976
Q ss_pred CCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEE
Q 013871 80 FPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAV 159 (434)
Q Consensus 80 ~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~ 159 (434)
.+......-.. .+.++.|...++..+. ++.++.|++|++... ++.
T Consensus 165 k~~~~t~~~ky-qltAv~f~d~s~qv~s------ggIdn~ikvWd~r~~-----------------------d~~----- 209 (338)
T KOG0265|consen 165 KEAIKTFENKY-QLTAVGFKDTSDQVIS------GGIDNDIKVWDLRKN-----------------------DGL----- 209 (338)
T ss_pred cchhhccccce-eEEEEEecccccceee------ccccCceeeeccccC-----------------------cce-----
Confidence 43211111111 3677788776555443 567778888887541 111
Q ss_pred EEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-----ceeEEe
Q 013871 160 AQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-----RPILEL 234 (434)
Q Consensus 160 ~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~-----~~~~~~ 234 (434)
|.+ .++ ..+|..+..+|+|.++. +.+||+++++||.+. ..+..+
T Consensus 210 ------------------~~l---sGh--------~DtIt~lsls~~gs~ll--snsMd~tvrvwd~rp~~p~~R~v~if 258 (338)
T KOG0265|consen 210 ------------------YTL---SGH--------ADTITGLSLSRYGSFLL--SNSMDNTVRVWDVRPFAPSQRCVKIF 258 (338)
T ss_pred ------------------EEe---ecc--------cCceeeEEeccCCCccc--cccccceEEEEEecccCCCCceEEEe
Confidence 222 112 56888999999999888 789999999999861 223323
Q ss_pred ----CCcC--eeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeC
Q 013871 235 ----GSGP--YNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQID 306 (434)
Q Consensus 235 ----~~~~--~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~prl~~D 306 (434)
|... ...++|||+++++..++ .+..+++||......+..+.+| .+..++|+|...+|+++++ |
T Consensus 259 ~g~~hnfeknlL~cswsp~~~~i~ags---~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~s------d 329 (338)
T KOG0265|consen 259 QGHIHNFEKNLLKCSWSPNGTKITAGS---ADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSS------D 329 (338)
T ss_pred ecchhhhhhhcceeeccCCCCcccccc---ccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEecc------C
Confidence 2222 33579999999998887 4459999999999999999998 4556999999999999999 8
Q ss_pred CcEEE
Q 013871 307 NGIKI 311 (434)
Q Consensus 307 ~~i~i 311 (434)
.+|.+
T Consensus 330 k~i~l 334 (338)
T KOG0265|consen 330 KTIYL 334 (338)
T ss_pred ceeEe
Confidence 88875
No 75
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.82 E-value=5.1e-19 Score=164.88 Aligned_cols=236 Identities=16% Similarity=0.205 Sum_probs=164.9
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCC-cEEEEe-cCCeEEEEeCCC
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDE-AVACRM-ATNEIQFFDTTD 79 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~-~~la~~-~~~~i~v~~~~~ 79 (434)
|+.++||.+|+.+++++ .|+.|++||++||+++.+|... ....|+.|.||+ +.++.+ .++.|+-||+.+
T Consensus 261 Vrd~~~s~~g~~fLS~s-----fD~~lKlwDtETG~~~~~f~~~----~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs 331 (503)
T KOG0282|consen 261 VRDASFNNCGTSFLSAS-----FDRFLKLWDTETGQVLSRFHLD----KVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRS 331 (503)
T ss_pred hhhhhccccCCeeeeee-----cceeeeeeccccceEEEEEecC----CCceeeecCCCCCcEEEEecCCCcEEEEeccc
Confidence 77899999999999999 8999999999999999998765 455589999998 555444 678999999998
Q ss_pred CCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeeccc-ceeEEEECCCCCeEEE
Q 013871 80 FPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRC-STVQLNWNRGSTGLLA 158 (434)
Q Consensus 80 ~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~-~~~~~~ws~~G~~l~~ 158 (434)
........-++..|..+.|-+++...|.. ..+..++||+... .-++........ ..-++.-+|.|.+++.
T Consensus 332 ~kvvqeYd~hLg~i~~i~F~~~g~rFiss------SDdks~riWe~~~---~v~ik~i~~~~~hsmP~~~~~P~~~~~~a 402 (503)
T KOG0282|consen 332 GKVVQEYDRHLGAILDITFVDEGRRFISS------SDDKSVRIWENRI---PVPIKNIADPEMHTMPCLTLHPNGKWFAA 402 (503)
T ss_pred hHHHHHHHhhhhheeeeEEccCCceEeee------ccCccEEEEEcCC---CccchhhcchhhccCcceecCCCCCeehh
Confidence 76555566778889999999986555542 3445899999876 333333222211 2235667888887643
Q ss_pred EEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccccee-EEe--C
Q 013871 159 VAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPI-LEL--G 235 (434)
Q Consensus 159 ~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~-~~~--~ 235 (434)
- + .|.....|. ....|.+.....++. ..-.|.-..+.|||||+.++ +|+.+|++.+||.++-.+ ..+ |
T Consensus 403 Q--s-~dN~i~ifs-~~~~~r~nkkK~feG---h~vaGys~~v~fSpDG~~l~--SGdsdG~v~~wdwkt~kl~~~lkah 473 (503)
T KOG0282|consen 403 Q--S-MDNYIAIFS-TVPPFRLNKKKRFEG---HSVAGYSCQVDFSPDGRTLC--SGDSDGKVNFWDWKTTKLVSKLKAH 473 (503)
T ss_pred h--c-cCceEEEEe-cccccccCHhhhhcc---eeccCceeeEEEcCCCCeEE--eecCCccEEEeechhhhhhhccccC
Confidence 2 1 222221111 111111111111000 00146667899999999999 899999999999975443 333 7
Q ss_pred CcCeeEEEECCCCC-eEEEEecCCCCCeEEEEE
Q 013871 236 SGPYNTVRWNPKGK-FLCLAGFGNLPGDMAFWD 267 (434)
Q Consensus 236 ~~~~~~i~~SP~g~-~l~~~~~~~~~g~i~iwd 267 (434)
.+++..+.|+|... .+|+++ .+|.|++||
T Consensus 474 ~~~ci~v~wHP~e~Skvat~~---w~G~Ikiwd 503 (503)
T KOG0282|consen 474 DQPCIGVDWHPVEPSKVATCG---WDGLIKIWD 503 (503)
T ss_pred CcceEEEEecCCCcceeEecc---cCceeEecC
Confidence 89999999999875 777777 678999996
No 76
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=3e-18 Score=147.84 Aligned_cols=282 Identities=12% Similarity=0.143 Sum_probs=194.5
Q ss_pred ceEEecCC-CcEEEEE--ecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCC--CcEEEEecCCeEEEEeC
Q 013871 3 LLLTCLRV-GLIIQTF--QKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSD--EAVACRMATNEIQFFDT 77 (434)
Q Consensus 3 ~~l~fSP~-g~~L~t~--~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d--~~~la~~~~~~i~v~~~ 77 (434)
.++.|||- .++|+.+ +-+.-...+.|.|-++..+.-+..+..-. ..+..-.++||++ ...++..+||++++||+
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d-~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~ 90 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYD-TEDGLFDVAWSENHENQVIAASGDGSLRLFDL 90 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeee-cccceeEeeecCCCcceEEEEecCceEEEecc
Confidence 47899994 3455433 33333456889999986554444433321 1144448899984 45666668999999997
Q ss_pred CCCCC-ceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeE
Q 013871 78 TDFPK-GILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGL 156 (434)
Q Consensus 78 ~~~~~-~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l 156 (434)
..... ....+-|...|.++.|.+-....+.. ..-+++|+||+... ...+.+...+..-+.+..|+|.-..+
T Consensus 91 ~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~lt-----sSWD~TiKLW~~~r---~~Sv~Tf~gh~~~Iy~a~~sp~~~nl 162 (311)
T KOG0277|consen 91 TMPSKPIHKFKEHKREVYSVDWNTVRRRIFLT-----SSWDGTIKLWDPNR---PNSVQTFNGHNSCIYQAAFSPHIPNL 162 (311)
T ss_pred CCCCcchhHHHhhhhheEEeccccccceeEEe-----eccCCceEeecCCC---CcceEeecCCccEEEEEecCCCCCCe
Confidence 55433 22344556679999999875444432 36788999999876 77788888888888999999987777
Q ss_pred EEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc--ceeEEe
Q 013871 157 LAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC--RPILEL 234 (434)
Q Consensus 157 ~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~--~~~~~~ 234 (434)
+..+++ |.+ -.||.++..|.. ..++. +...|.++.|+.-...+++ +|..|+.|+.||++. .++.++
T Consensus 163 fas~Sg--d~~-------l~lwdvr~~gk~-~~i~a-h~~Eil~cdw~ky~~~vl~-Tg~vd~~vr~wDir~~r~pl~eL 230 (311)
T KOG0277|consen 163 FASASG--DGT-------LRLWDVRSPGKF-MSIEA-HNSEILCCDWSKYNHNVLA-TGGVDNLVRGWDIRNLRTPLFEL 230 (311)
T ss_pred EEEccC--Cce-------EEEEEecCCCce-eEEEe-ccceeEeecccccCCcEEE-ecCCCceEEEEehhhccccceee
Confidence 555443 333 346666555542 22333 3578999999986555554 789999999999973 456665
Q ss_pred --CCcCeeEEEECCCCC-eEEEEecCCCCCeEEEEEccCC-EEEEEeeCC--CceEEEECCC-CCEEEEEEcCCceeeCC
Q 013871 235 --GSGPYNTVRWNPKGK-FLCLAGFGNLPGDMAFWDYVDG-KQLGTTRAE--CSVTSEWSPD-GRYFMTATTAPRLQIDN 307 (434)
Q Consensus 235 --~~~~~~~i~~SP~g~-~l~~~~~~~~~g~i~iwd~~~~-~~i~~~~~~--~~~~~~wspd-g~~l~tas~~prl~~D~ 307 (434)
|.-.|..+.|||+.. .|+++++|- +++|||.... ..+.+...| -+..+.||+- +.++++.+- |.
T Consensus 231 ~gh~~AVRkvk~Sph~~~lLaSasYDm---T~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gW------De 301 (311)
T KOG0277|consen 231 NGHGLAVRKVKFSPHHASLLASASYDM---TVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGW------DE 301 (311)
T ss_pred cCCceEEEEEecCcchhhHhhhccccc---eEEecccccchhhhhhhhccceEEeccccccccCceeeeccc------cc
Confidence 677899999999875 788888664 9999998855 345555555 3334899874 556676666 99
Q ss_pred cEEEEee
Q 013871 308 GIKIFHH 314 (434)
Q Consensus 308 ~i~iw~~ 314 (434)
.++||+-
T Consensus 302 ~l~Vw~p 308 (311)
T KOG0277|consen 302 LLYVWNP 308 (311)
T ss_pred ceeeecc
Confidence 9999983
No 77
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.81 E-value=5.1e-18 Score=150.54 Aligned_cols=229 Identities=13% Similarity=0.151 Sum_probs=167.3
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCc--EEEEe-cCCeEEEEeCC
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEA--VACRM-ATNEIQFFDTT 78 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~--~la~~-~~~~i~v~~~~ 78 (434)
|++|+. +|.|+|+.+ .|.+|+|||+.+...+..+..+. ..++++.|.++-. .|.++ .|+.|.+|+..
T Consensus 46 itavAV--s~~~~aSGs-----sDetI~IYDm~k~~qlg~ll~Ha---gsitaL~F~~~~S~shLlS~sdDG~i~iw~~~ 115 (362)
T KOG0294|consen 46 ITALAV--SGPYVASGS-----SDETIHIYDMRKRKQLGILLSHA---GSITALKFYPPLSKSHLLSGSDDGHIIIWRVG 115 (362)
T ss_pred eeEEEe--cceeEeccC-----CCCcEEEEeccchhhhcceeccc---cceEEEEecCCcchhheeeecCCCcEEEEEcC
Confidence 456666 688999888 89999999999888888877653 7888999999874 55555 67899999999
Q ss_pred CCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEE
Q 013871 79 DFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLA 158 (434)
Q Consensus 79 ~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~ 158 (434)
.+......+-|...|+.++++|.+...+++ +.+..+++|++-.+ +.-.+
T Consensus 116 ~W~~~~slK~H~~~Vt~lsiHPS~KLALsV------g~D~~lr~WNLV~G-------------------------r~a~v 164 (362)
T KOG0294|consen 116 SWELLKSLKAHKGQVTDLSIHPSGKLALSV------GGDQVLRTWNLVRG-------------------------RVAFV 164 (362)
T ss_pred CeEEeeeecccccccceeEecCCCceEEEE------cCCceeeeehhhcC-------------------------cccee
Confidence 987766777777789999999986544544 45668888988651 11111
Q ss_pred EEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeEEeCCc-
Q 013871 159 VAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSG- 237 (434)
Q Consensus 159 ~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~~~~~- 237 (434)
+ +|. ..-+.+.|+|.|.+|+++. ..+|-+|.+....++..-..
T Consensus 165 ~-------------------------------~L~--~~at~v~w~~~Gd~F~v~~---~~~i~i~q~d~A~v~~~i~~~ 208 (362)
T KOG0294|consen 165 L-------------------------------NLK--NKATLVSWSPQGDHFVVSG---RNKIDIYQLDNASVFREIENP 208 (362)
T ss_pred e-------------------------------ccC--CcceeeEEcCCCCEEEEEe---ccEEEEEecccHhHhhhhhcc
Confidence 0 011 1123389999999999853 34889998865554433222
Q ss_pred -CeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEE--EECCCCCEEEEEEcCCceeeCCcEEEE
Q 013871 238 -PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTS--EWSPDGRYFMTATTAPRLQIDNGIKIF 312 (434)
Q Consensus 238 -~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~--~wspdg~~l~tas~~prl~~D~~i~iw 312 (434)
.+.++.|- ++..|++|+ .++.|.+||.++......+.+| .+-.+ --.|++.+|+|+++ ||.|+||
T Consensus 209 ~r~l~~~~l-~~~~L~vG~---d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSS------DG~I~vW 278 (362)
T KOG0294|consen 209 KRILCATFL-DGSELLVGG---DNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASS------DGFIKVW 278 (362)
T ss_pred ccceeeeec-CCceEEEec---CCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEecc------CceEEEE
Confidence 24455553 466777787 5579999999998888888888 33333 34789999999999 9999999
Q ss_pred eecCc
Q 013871 313 HHNGS 317 (434)
Q Consensus 313 ~~~g~ 317 (434)
|++-.
T Consensus 279 d~~~~ 283 (362)
T KOG0294|consen 279 DIDME 283 (362)
T ss_pred Ecccc
Confidence 99665
No 78
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.81 E-value=7.3e-17 Score=159.86 Aligned_cols=240 Identities=13% Similarity=0.131 Sum_probs=159.0
Q ss_pred eEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEEC
Q 013871 71 EIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWN 150 (434)
Q Consensus 71 ~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws 150 (434)
+|.++|...... .........+....|||+ +..+++...+.+ ...+.++++.. ++ ...+..+......+.|+
T Consensus 180 ~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPD-G~~la~~s~~~g--~~~i~i~dl~~---G~-~~~l~~~~~~~~~~~~S 251 (429)
T PRK03629 180 ELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPD-GSKLAYVTFESG--RSALVIQTLAN---GA-VRQVASFPRHNGAPAFS 251 (429)
T ss_pred eEEEEcCCCCCC-EEeecCCCceeeeEEcCC-CCEEEEEEecCC--CcEEEEEECCC---CC-eEEccCCCCCcCCeEEC
Confidence 788888776443 222223345889999999 566665543322 35788888865 33 22233334445578999
Q ss_pred CCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCC--eEEEEeccc
Q 013871 151 RGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPA--SATIFNKKC 228 (434)
Q Consensus 151 ~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~--~v~l~d~~~ 228 (434)
|||+.|++..+.+ |...||.+++.+.....+. .....+..+.|+|||+.+++.+.. .+ .+.++|+.+
T Consensus 252 PDG~~La~~~~~~---------g~~~I~~~d~~tg~~~~lt-~~~~~~~~~~wSPDG~~I~f~s~~-~g~~~Iy~~d~~~ 320 (429)
T PRK03629 252 PDGSKLAFALSKT---------GSLNLYVMDLASGQIRQVT-DGRSNNTEPTWFPDSQNLAYTSDQ-AGRPQVYKVNING 320 (429)
T ss_pred CCCCEEEEEEcCC---------CCcEEEEEECCCCCEEEcc-CCCCCcCceEECCCCCEEEEEeCC-CCCceEEEEECCC
Confidence 9999988764321 3345888887765433332 224567889999999999876532 23 566667765
Q ss_pred ceeEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceEEEECCCCCEEEEEEcCCceeeC
Q 013871 229 RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQID 306 (434)
Q Consensus 229 ~~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~~~wspdg~~l~tas~~prl~~D 306 (434)
.....+ .........|||||++|+..+..+....|++||+.+++..............|||||++|+.++. |
T Consensus 321 g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~~~~~~p~~SpDG~~i~~~s~------~ 394 (429)
T PRK03629 321 GAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDTFLDETPSIAPNGTMVIYSSS------Q 394 (429)
T ss_pred CCeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCCCCCCCCceECCCCCEEEEEEc------C
Confidence 544443 33445678999999999887755445679999998875443333223335899999999999998 5
Q ss_pred Cc---EEEEeecCceeeee--ecccceeeEEEcC
Q 013871 307 NG---IKIFHHNGSLFFKK--MFDKLFQAEWKPV 335 (434)
Q Consensus 307 ~~---i~iw~~~g~~~~~~--~~~~~~~~~w~p~ 335 (434)
+. +.+++.+|...... +...+....|+|.
T Consensus 395 ~~~~~l~~~~~~G~~~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 395 GMGSVLNLVSTDGRFKARLPATDGQVKFPAWSPY 428 (429)
T ss_pred CCceEEEEEECCCCCeEECccCCCCcCCcccCCC
Confidence 53 77888889876554 3356888889874
No 79
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=4.5e-16 Score=132.23 Aligned_cols=289 Identities=15% Similarity=0.198 Sum_probs=187.9
Q ss_pred CcceEEecCCCcEEEEEecCCCCCCCcEEEEE------cCCCc------EEEEEeecCcCCCCCCeeeecCCCcEEEEec
Q 013871 1 MLLLLTCLRVGLIIQTFQKSSTPQEKNVILWK------TETGE------AVYQLFQKNMTKTTWPSIRFSSDEAVACRMA 68 (434)
Q Consensus 1 ~V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd------~~~g~------~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~ 68 (434)
.|++++|.|.|..-+..+ ..++++|-- +..+. +.-.+.....|+..+-|.+|||+|.++|+++
T Consensus 34 airav~fhp~g~lyavgs-----nskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgs 108 (350)
T KOG0641|consen 34 AIRAVAFHPAGGLYAVGS-----NSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGS 108 (350)
T ss_pred heeeEEecCCCceEEecc-----CCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecC
Confidence 378999999999999877 556666542 21111 1122333334567777999999999999997
Q ss_pred C-CeEEEEeCCCCCC---c--eeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeeccc
Q 013871 69 T-NEIQFFDTTDFPK---G--ILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRC 142 (434)
Q Consensus 69 ~-~~i~v~~~~~~~~---~--~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~ 142 (434)
+ .+|++...+.... + .....|...|++++|-.+...--++.... +..+..|.+-+... ++.....+.|..
T Consensus 109 ndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~-gagdc~iy~tdc~~---g~~~~a~sghtg 184 (350)
T KOG0641|consen 109 NDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASA-GAGDCKIYITDCGR---GQGFHALSGHTG 184 (350)
T ss_pred CCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEec-CCCcceEEEeecCC---CCcceeecCCcc
Confidence 5 4888766543211 1 12334455688888765532211222211 11223444445555 788888888888
Q ss_pred ceeEE-EECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeE
Q 013871 143 STVQL-NWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASA 221 (434)
Q Consensus 143 ~~~~~-~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v 221 (434)
.+..+ .||. .+ +++...|++.+.|.-..+... .+.+..-..--++ ...|.+++..|.|+.++ +|..|...
T Consensus 185 hilalyswn~---~m--~~sgsqdktirfwdlrv~~~v-~~l~~~~~~~gle-ssavaav~vdpsgrll~--sg~~dssc 255 (350)
T KOG0641|consen 185 HILALYSWNG---AM--FASGSQDKTIRFWDLRVNSCV-NTLDNDFHDGGLE-SSAVAAVAVDPSGRLLA--SGHADSSC 255 (350)
T ss_pred cEEEEEEecC---cE--EEccCCCceEEEEeeecccee-eeccCcccCCCcc-cceeEEEEECCCcceee--eccCCCce
Confidence 87765 5763 22 455557888876642221110 1101000000011 35688999999999998 79999999
Q ss_pred EEEeccc-ceeEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC---E-EEEEeeCC--CceEEEECCCCC
Q 013871 222 TIFNKKC-RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG---K-QLGTTRAE--CSVTSEWSPDGR 292 (434)
Q Consensus 222 ~l~d~~~-~~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~---~-~i~~~~~~--~~~~~~wspdg~ 292 (434)
.+||+++ ..+..| |...+.++.|||...|++++++++ .|++-|+..- + .+.....| .++.|.|.|..-
T Consensus 256 ~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~---~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~ 332 (350)
T KOG0641|consen 256 MLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDM---KIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDF 332 (350)
T ss_pred EEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccc---eEEEeecccchhhcCceEEEEeccCceEEEEecCccc
Confidence 9999985 456666 678899999999999999999776 9999998732 1 12222222 566799999999
Q ss_pred EEEEEEcCCceeeCCcEEEEeecC
Q 013871 293 YFMTATTAPRLQIDNGIKIFHHNG 316 (434)
Q Consensus 293 ~l~tas~~prl~~D~~i~iw~~~g 316 (434)
.|++.+. |.++.+|.+.|
T Consensus 333 sfisssa------dkt~tlwa~~~ 350 (350)
T KOG0641|consen 333 SFISSSA------DKTATLWALNG 350 (350)
T ss_pred eeeeccC------cceEEEeccCC
Confidence 9999988 99999998865
No 80
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.80 E-value=2.4e-18 Score=157.56 Aligned_cols=260 Identities=11% Similarity=0.113 Sum_probs=193.3
Q ss_pred CCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCCC--CceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEc
Q 013871 49 KTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDFP--KGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYAC 125 (434)
Q Consensus 49 ~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~~--~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~ 125 (434)
...+..+.|-++...|+++ .|..|++|++.... ..........+|.++.+.+++...||. +.+..+++|++
T Consensus 175 ~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAa------s~d~~~r~Wnv 248 (459)
T KOG0288|consen 175 EGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAA------SNDKNLRLWNV 248 (459)
T ss_pred ccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEee------cCCCceeeeec
Confidence 3566688999998888887 46699999986533 222233445679999999986555552 55678999999
Q ss_pred CCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECc
Q 013871 126 GKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSY 205 (434)
Q Consensus 126 ~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wsp 205 (434)
.+ .+...++++|...++.+.+...... +.+...|.+.+.|. +. .. .|.-++-....+.+|.-+
T Consensus 249 d~---~r~~~TLsGHtdkVt~ak~~~~~~~---vVsgs~DRtiK~WD-------l~--k~-~C~kt~l~~S~cnDI~~~- 311 (459)
T KOG0288|consen 249 DS---LRLRHTLSGHTDKVTAAKFKLSHSR---VVSGSADRTIKLWD-------LQ--KA-YCSKTVLPGSQCNDIVCS- 311 (459)
T ss_pred cc---hhhhhhhcccccceeeehhhccccc---eeeccccchhhhhh-------hh--hh-heeccccccccccceEec-
Confidence 88 7889999999999999988876655 23344677777553 21 11 222222123456777766
Q ss_pred CCCEEEEEEccCCCeEEEEeccc-ceeEEe-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC---
Q 013871 206 SGSEFAVVYGFMPASATIFNKKC-RPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--- 280 (434)
Q Consensus 206 dg~~~av~~g~~~~~v~l~d~~~-~~~~~~-~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--- 280 (434)
...+++|.+|.+|++||.+. ..+.+. ..+.++++..+++|..|++.+.++ ++.+.|+.+.+....+.+.
T Consensus 312 ---~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDd---tl~viDlRt~eI~~~~sA~g~k 385 (459)
T KOG0288|consen 312 ---ISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDD---TLKVIDLRTKEIRQTFSAEGFK 385 (459)
T ss_pred ---ceeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCC---ceeeeecccccEEEEeeccccc
Confidence 24455899999999999874 445555 356899999999999999998776 9999999999888887764
Q ss_pred ---CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceeeee---ec-c-cceeeEEEcCCCCCCCCc
Q 013871 281 ---CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKK---MF-D-KLFQAEWKPVSPDKFGDI 343 (434)
Q Consensus 281 ---~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~~~~~---~~-~-~~~~~~w~p~~~~~~~~~ 343 (434)
+.+.+.|||||+|+++|+. |+.|+||++.+..+... .. . .+..+.|.|-+.+++...
T Consensus 386 ~asDwtrvvfSpd~~YvaAGS~------dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsad 450 (459)
T KOG0288|consen 386 CASDWTRVVFSPDGSYVAAGSA------DGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSAD 450 (459)
T ss_pred cccccceeEECCCCceeeeccC------CCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhccc
Confidence 5555999999999999999 99999999966544332 11 2 599999999999988874
No 81
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.80 E-value=3.4e-16 Score=147.56 Aligned_cols=255 Identities=10% Similarity=0.069 Sum_probs=161.3
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe--cCCeEEEEeCCC
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM--ATNEIQFFDTTD 79 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~--~~~~i~v~~~~~ 79 (434)
+.+++|+|+|++|+... ..++.|++||+.+++.+..+.... . ...+.|+||+++++.. .++.|.+||+..
T Consensus 33 ~~~l~~~~dg~~l~~~~----~~~~~v~~~d~~~~~~~~~~~~~~---~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~ 104 (300)
T TIGR03866 33 PRGITLSKDGKLLYVCA----SDSDTIQVIDLATGEVIGTLPSGP---D-PELFALHPNGKILYIANEDDNLVTVIDIET 104 (300)
T ss_pred CCceEECCCCCEEEEEE----CCCCeEEEEECCCCcEEEeccCCC---C-ccEEEECCCCCEEEEEcCCCCeEEEEECCC
Confidence 45789999999875433 157889999999998877665432 2 3378999999977554 357999999976
Q ss_pred CCCceeeeee-cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEE
Q 013871 80 FPKGILYRLR-VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLA 158 (434)
Q Consensus 80 ~~~~~~~~~~-~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~ 158 (434)
... ...+. ...+..+.|+|++ ..+++... ....+.+|+..+ ...+... ........+.|+++|+.+++
T Consensus 105 ~~~--~~~~~~~~~~~~~~~~~dg-~~l~~~~~----~~~~~~~~d~~~---~~~~~~~-~~~~~~~~~~~s~dg~~l~~ 173 (300)
T TIGR03866 105 RKV--LAEIPVGVEPEGMAVSPDG-KIVVNTSE----TTNMAHFIDTKT---YEIVDNV-LVDQRPRFAEFTADGKELWV 173 (300)
T ss_pred CeE--EeEeeCCCCcceEEECCCC-CEEEEEec----CCCeEEEEeCCC---CeEEEEE-EcCCCccEEEECCCCCEEEE
Confidence 432 22222 1236789999984 44443221 123466677755 3333222 22234457899999998765
Q ss_pred EEEecccccCceeecceeEEEEeeCCcce-eeeecCC------CCCeEEEEECcCCCEEEEEEccCCCeEEEEeccccee
Q 013871 159 VAQSDVDKTNQSYYGESKLNYLTTDGTHE-GLVPLRK------EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPI 231 (434)
Q Consensus 159 ~~~~~~d~~~~~~~g~~~l~~l~~~~~~~-~~v~l~~------~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~ 231 (434)
... .+. .++.++...... ..+.... ......++|+|+|+.+++..+ .+..+.+||++...+
T Consensus 174 ~~~--~~~---------~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~-~~~~i~v~d~~~~~~ 241 (300)
T TIGR03866 174 SSE--IGG---------TVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALG-PANRVAVVDAKTYEV 241 (300)
T ss_pred EcC--CCC---------EEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcC-CCCeEEEEECCCCcE
Confidence 321 121 133344333211 1111110 112346899999998765433 356899999975443
Q ss_pred E-Ee-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC-CceEEEECC
Q 013871 232 L-EL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-CSVTSEWSP 289 (434)
Q Consensus 232 ~-~~-~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-~~~~~~wsp 289 (434)
. .+ +...+.++.|+|+|++|++++. .+|+|.+||+++++.+..+... .+..++++|
T Consensus 242 ~~~~~~~~~~~~~~~~~~g~~l~~~~~--~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~ 300 (300)
T TIGR03866 242 LDYLLVGQRVWQLAFTPDEKYLLTTNG--VSNDVSVIDVAALKVIKSIKVGRLPWGVVVRP 300 (300)
T ss_pred EEEEEeCCCcceEEECCCCCEEEEEcC--CCCeEEEEECCCCcEEEEEEcccccceeEeCC
Confidence 3 22 4567889999999999987642 3579999999999988777654 455566654
No 82
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.79 E-value=2.3e-17 Score=160.95 Aligned_cols=276 Identities=14% Similarity=0.063 Sum_probs=202.5
Q ss_pred cceEEe-cCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCC
Q 013871 2 LLLLTC-LRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTD 79 (434)
Q Consensus 2 V~~l~f-SP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~ 79 (434)
|..|.| -|+.++|+.++ +.+.++++++.+-.+- -+.+ |.+.+.++.-..+|-+|++++ |+++++|.+++
T Consensus 326 I~Dm~~lG~e~~~laVAT-----Ns~~lr~y~~~~~~c~-ii~G---H~e~vlSL~~~~~g~llat~sKD~svilWr~~~ 396 (775)
T KOG0319|consen 326 ILDMKFLGPEESHLAVAT-----NSPELRLYTLPTSYCQ-IIPG---HTEAVLSLDVWSSGDLLATGSKDKSVILWRLNN 396 (775)
T ss_pred heeeeecCCccceEEEEe-----CCCceEEEecCCCceE-EEeC---chhheeeeeecccCcEEEEecCCceEEEEEecC
Confidence 344554 57889999988 6789999998877763 3333 447777888556778999885 67999998844
Q ss_pred CCC----ceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCc--ee----eeeecccceeEEEE
Q 013871 80 FPK----GILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQP--LA----RRSFFRCSTVQLNW 149 (434)
Q Consensus 80 ~~~----~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~--i~----~~~~~~~~~~~~~w 149 (434)
... ......|...|..++++-.+...++ +.+.+.++++|+++...+... +. ....|..++.++..
T Consensus 397 ~~~~~~~~a~~~gH~~svgava~~~~~asffv-----svS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vai 471 (775)
T KOG0319|consen 397 NCSKSLCVAQANGHTNSVGAVAGSKLGASFFV-----SVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAI 471 (775)
T ss_pred CcchhhhhhhhcccccccceeeecccCccEEE-----EecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEe
Confidence 221 1223445566778888766544444 246778999999987221111 11 12246778899999
Q ss_pred CCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-c
Q 013871 150 NRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-C 228 (434)
Q Consensus 150 s~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~-~ 228 (434)
+|+.+.+ +....|++-+.|.-+ ++-++.+..+ |...|.++.|+|....++ +++.|.+|+||.+. .
T Consensus 472 a~ndkLi---AT~SqDktaKiW~le-~~~l~~vLsG--------H~RGvw~V~Fs~~dq~la--T~SgD~TvKIW~is~f 537 (775)
T KOG0319|consen 472 APNDKLI---ATGSQDKTAKIWDLE-QLRLLGVLSG--------HTRGVWCVSFSKNDQLLA--TCSGDKTVKIWSISTF 537 (775)
T ss_pred cCCCceE---Eecccccceeeeccc-CceEEEEeeC--------CccceEEEEeccccceeE--eccCCceEEEEEeccc
Confidence 9988754 334467888755443 2223333333 477999999999998888 45667899999885 3
Q ss_pred ceeEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCcee
Q 013871 229 RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQ 304 (434)
Q Consensus 229 ~~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~prl~ 304 (434)
..+.+| |...|..+.|-.+|+.|++++ .+|-|++|++++.+++.++.+| .++.++-+|.+.+|+||+.
T Consensus 538 SClkT~eGH~~aVlra~F~~~~~qliS~~---adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~----- 609 (775)
T KOG0319|consen 538 SCLKTFEGHTSAVLRASFIRNGKQLISAG---ADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGG----- 609 (775)
T ss_pred eeeeeecCccceeEeeeeeeCCcEEEecc---CCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCC-----
Confidence 444444 788999999999999999999 6789999999999999999998 5677999999999999999
Q ss_pred eCCcEEEEee
Q 013871 305 IDNGIKIFHH 314 (434)
Q Consensus 305 ~D~~i~iw~~ 314 (434)
|+.|.+|+=
T Consensus 610 -Dg~i~~wkD 618 (775)
T KOG0319|consen 610 -DGRIIFWKD 618 (775)
T ss_pred -CeEEEEeec
Confidence 999999974
No 83
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=3.4e-17 Score=145.32 Aligned_cols=272 Identities=14% Similarity=0.145 Sum_probs=180.0
Q ss_pred ceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCC
Q 013871 3 LLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFP 81 (434)
Q Consensus 3 ~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~ 81 (434)
.|+.||+.|.|||.+. .|+.|.|||+.|...-+.+..+ ...+.+++||+||+.|++++ |+.|.+||+..+.
T Consensus 27 ~~~~Fs~~G~~lAvGc-----~nG~vvI~D~~T~~iar~lsaH---~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs 98 (405)
T KOG1273|consen 27 ECCQFSRWGDYLAVGC-----ANGRVVIYDFDTFRIARMLSAH---VRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGS 98 (405)
T ss_pred ceEEeccCcceeeeec-----cCCcEEEEEccccchhhhhhcc---ccceeEEEecCCCCEeeeecCCceeEEEeccCCC
Confidence 5899999999999998 8999999999988765555553 36788999999999999885 6899999998876
Q ss_pred CceeeeeecC-CeeEEEEeCCCCCeE-EEEecCCCCCCceEEEEEcCCCCCCCceeeeeec--ccceeEEEECCCCCeEE
Q 013871 82 KGILYRLRVP-GVAAFEVSKAPGSHV-AVFVPESKGSPASVQIYACGKDLQSQPLARRSFF--RCSTVQLNWNRGSTGLL 157 (434)
Q Consensus 82 ~~~~~~~~~~-~v~~~~~sp~~~~~i-a~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~--~~~~~~~~ws~~G~~l~ 157 (434)
. ..++.+. .|....|+|-..+.+ ++-+.++ | .+..++-+. ...+..-.-. ........+.+.|++|+
T Consensus 99 ~--l~rirf~spv~~~q~hp~k~n~~va~~~~~s---p-~vi~~s~~~---h~~Lp~d~d~dln~sas~~~fdr~g~yIi 169 (405)
T KOG1273|consen 99 P--LKRIRFDSPVWGAQWHPRKRNKCVATIMEES---P-VVIDFSDPK---HSVLPKDDDGDLNSSASHGVFDRRGKYII 169 (405)
T ss_pred c--eeEEEccCccceeeeccccCCeEEEEEecCC---c-EEEEecCCc---eeeccCCCccccccccccccccCCCCEEE
Confidence 4 3444443 488899999754433 3322221 2 222222111 0000000000 00001124678888876
Q ss_pred EEEEecccccCceeecceeEEEEeeCCcceeeeecC--CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-------
Q 013871 158 AVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR--KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC------- 228 (434)
Q Consensus 158 ~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~--~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~------- 228 (434)
..++ .| .|..++.... ++...+. ....|.++.++-.|+.|++ ...|..|+.|+++.
T Consensus 170 tGts-----KG-------kllv~~a~t~-e~vas~rits~~~IK~I~~s~~g~~lii--NtsDRvIR~ye~~di~~~~r~ 234 (405)
T KOG1273|consen 170 TGTS-----KG-------KLLVYDAETL-ECVASFRITSVQAIKQIIVSRKGRFLII--NTSDRVIRTYEISDIDDEGRD 234 (405)
T ss_pred EecC-----cc-------eEEEEecchh-eeeeeeeechheeeeEEEEeccCcEEEE--ecCCceEEEEehhhhcccCcc
Confidence 6431 11 1333333222 2222211 1357889999999999986 56688999998751
Q ss_pred ---ceeEEe----CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC---CceEEEECCCCCEEEEEE
Q 013871 229 ---RPILEL----GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE---CSVTSEWSPDGRYFMTAT 298 (434)
Q Consensus 229 ---~~~~~~----~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~---~~~~~~wspdg~~l~tas 298 (434)
++.+.+ .+.+-++++||-+|.|++.++. ....++||....|.++..+.+. ....+.|.|-...|++-
T Consensus 235 ~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~--~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si- 311 (405)
T KOG1273|consen 235 GEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSA--RAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI- 311 (405)
T ss_pred CCcChhHHHHHHHhhhhhhheeecCCccEEEeccc--cceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-
Confidence 111222 3456688999999999998762 4579999999999888888765 45568999998777776
Q ss_pred cCCceeeCCcEEEEeec
Q 013871 299 TAPRLQIDNGIKIFHHN 315 (434)
Q Consensus 299 ~~prl~~D~~i~iw~~~ 315 (434)
. .+.++||...
T Consensus 312 ~------sg~v~iw~~~ 322 (405)
T KOG1273|consen 312 A------SGVVYIWAVV 322 (405)
T ss_pred c------CCceEEEEee
Confidence 3 7999999864
No 84
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=4.3e-17 Score=151.30 Aligned_cols=274 Identities=12% Similarity=0.204 Sum_probs=195.4
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCC--CcEEEEEeecCcCCCCCCeeeecCCCc-EEEEec-CCeEEEEeC
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTET--GEAVYQLFQKNMTKTTWPSIRFSSDEA-VACRMA-TNEIQFFDT 77 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~--g~~~~~~~~~~~~~~~~~~~~~S~d~~-~la~~~-~~~i~v~~~ 77 (434)
|++|+|+|.-..|+|++ .|++++||.+.. ...++++.... ..+.+..|.|+|. .+++++ ..-++.||+
T Consensus 216 I~sv~FHp~~plllvaG-----~d~~lrifqvDGk~N~~lqS~~l~~---fPi~~a~f~p~G~~~i~~s~rrky~ysyDl 287 (514)
T KOG2055|consen 216 ITSVQFHPTAPLLLVAG-----LDGTLRIFQVDGKVNPKLQSIHLEK---FPIQKAEFAPNGHSVIFTSGRRKYLYSYDL 287 (514)
T ss_pred ceEEEecCCCceEEEec-----CCCcEEEEEecCccChhheeeeecc---CccceeeecCCCceEEEecccceEEEEeec
Confidence 78999999999999999 899999998742 23456655544 5666889999998 555554 358999999
Q ss_pred CCCCCceee---eeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCC
Q 013871 78 TDFPKGILY---RLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGST 154 (434)
Q Consensus 78 ~~~~~~~~~---~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~ 154 (434)
......... ......+..|++||+ +++|++ .|..+.|.|....+ +.-+.... ..+.+..+.|+.+|+
T Consensus 288 e~ak~~k~~~~~g~e~~~~e~FeVShd-~~fia~-----~G~~G~I~lLhakT---~eli~s~K-ieG~v~~~~fsSdsk 357 (514)
T KOG2055|consen 288 ETAKVTKLKPPYGVEEKSMERFEVSHD-SNFIAI-----AGNNGHIHLLHAKT---KELITSFK-IEGVVSDFTFSSDSK 357 (514)
T ss_pred cccccccccCCCCcccchhheeEecCC-CCeEEE-----cccCceEEeehhhh---hhhhheee-eccEEeeEEEecCCc
Confidence 763321111 112336788999999 566665 35667777776655 44444333 234567889999999
Q ss_pred eEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeE--EEEECcCCCEEEEEEccCCCeEEEEecc-----
Q 013871 155 GLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVH--DVQWSYSGSEFAVVYGFMPASATIFNKK----- 227 (434)
Q Consensus 155 ~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~--~v~wspdg~~~av~~g~~~~~v~l~d~~----- 227 (434)
.|+++..+ | .+|.+++... .+.-....+|.|+ +++.|++|.+|| +|+..|.|.|||.+
T Consensus 358 ~l~~~~~~----------G--eV~v~nl~~~-~~~~rf~D~G~v~gts~~~S~ng~ylA--~GS~~GiVNIYd~~s~~~s 422 (514)
T KOG2055|consen 358 ELLASGGT----------G--EVYVWNLRQN-SCLHRFVDDGSVHGTSLCISLNGSYLA--TGSDSGIVNIYDGNSCFAS 422 (514)
T ss_pred EEEEEcCC----------c--eEEEEecCCc-ceEEEEeecCccceeeeeecCCCceEE--eccCcceEEEeccchhhcc
Confidence 88765311 3 3566655444 3333333356665 678889999999 69999999999964
Q ss_pred --cceeEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC-----CceEEEECCCCCEEEEEE
Q 013871 228 --CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-----CSVTSEWSPDGRYFMTAT 298 (434)
Q Consensus 228 --~~~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-----~~~~~~wspdg~~l~tas 298 (434)
-.++..+ -...|+++.|+||+++||+++.. ....+++..+-+......+... .+++++|||.|-||+.|.
T Consensus 423 ~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~-~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGN 501 (514)
T KOG2055|consen 423 TNPKPIKTVDNLTTAITSLQFNHDAQILAIASRV-KKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGN 501 (514)
T ss_pred CCCCchhhhhhhheeeeeeeeCcchhhhhhhhhc-cccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeec
Confidence 2345444 36778999999999999999865 3457888888777666655442 567899999999999999
Q ss_pred cCCceeeCCcEEEEeec
Q 013871 299 TAPRLQIDNGIKIFHHN 315 (434)
Q Consensus 299 ~~prl~~D~~i~iw~~~ 315 (434)
. ++.+.+|.+.
T Consensus 502 e------~grv~l~kL~ 512 (514)
T KOG2055|consen 502 E------AGRVHLFKLH 512 (514)
T ss_pred C------CCceeeEeec
Confidence 9 9999999863
No 85
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.79 E-value=1.2e-18 Score=155.38 Aligned_cols=294 Identities=12% Similarity=0.125 Sum_probs=189.7
Q ss_pred eEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe--cCCeEEEEeCCCCC
Q 013871 4 LLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM--ATNEIQFFDTTDFP 81 (434)
Q Consensus 4 ~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~--~~~~i~v~~~~~~~ 81 (434)
...|||+|+|+++.++ -.+.|-|..+-+.++-|..- +.+..+.|+.|.-++.++ .++.|++|++...+
T Consensus 13 ~c~fSp~g~yiAs~~~------yrlviRd~~tlq~~qlf~cl----dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpe 82 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSR------YRLVIRDSETLQLHQLFLCL----DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPE 82 (447)
T ss_pred ceeECCCCCeeeeeee------eEEEEeccchhhHHHHHHHH----HHhhheeeeccceeeeeeeeccceEEEEEeecce
Confidence 3679999999999883 37888898887765554443 233378999999888776 45799999998755
Q ss_pred CceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEE
Q 013871 82 KGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQ 161 (434)
Q Consensus 82 ~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~ 161 (434)
-.....-...++.++.|||++ ..|..+ .....+|.+|++.+ +...-....+...-.+.+++||++.+++..
T Consensus 83 w~ckIdeg~agls~~~WSPdg-rhiL~t----seF~lriTVWSL~t----~~~~~~~~pK~~~kg~~f~~dg~f~ai~sR 153 (447)
T KOG4497|consen 83 WYCKIDEGQAGLSSISWSPDG-RHILLT----SEFDLRITVWSLNT----QKGYLLPHPKTNVKGYAFHPDGQFCAILSR 153 (447)
T ss_pred eEEEeccCCCcceeeeECCCc-ceEeee----ecceeEEEEEEecc----ceeEEecccccCceeEEECCCCceeeeeec
Confidence 333333345689999999994 444433 34556899999976 333344455666678899999999877654
Q ss_pred ecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeEEeCCcCeeE
Q 013871 162 SDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSGPYNT 241 (434)
Q Consensus 162 ~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~~~~~~~~~ 241 (434)
.|- +-|+.-.......+.+. .. ++ .-...++.|||||..++|.-..-+.+|..|.- .-.+..
T Consensus 154 rDC----kdyv~i~~c~~W~ll~~--f~--~d-T~DltgieWsPdg~~laVwd~~Leykv~aYe~---------~lG~k~ 215 (447)
T KOG4497|consen 154 RDC----KDYVQISSCKAWILLKE--FK--LD-TIDLTGIEWSPDGNWLAVWDNVLEYKVYAYER---------GLGLKF 215 (447)
T ss_pred ccH----HHHHHHHhhHHHHHHHh--cC--CC-cccccCceECCCCcEEEEecchhhheeeeeee---------ccceeE
Confidence 322 11110000000000111 11 11 23456789999999999865544455555432 123567
Q ss_pred EEECCCCCeEEEEecCCCCCeEEEEEccCCE-------------------------------------------------
Q 013871 242 VRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK------------------------------------------------- 272 (434)
Q Consensus 242 i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~------------------------------------------------- 272 (434)
+.|||.+++|++|++| +.++|.+--+.+
T Consensus 216 v~wsP~~qflavGsyD---~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~s 292 (447)
T KOG4497|consen 216 VEWSPCNQFLAVGSYD---QMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEES 292 (447)
T ss_pred EEeccccceEEeeccc---hhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccc
Confidence 8899999999988854 455554322111
Q ss_pred -----------EEEEee------CC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceeeee--ecccceeeE
Q 013871 273 -----------QLGTTR------AE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKK--MFDKLFQAE 331 (434)
Q Consensus 273 -----------~i~~~~------~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~~~~~--~~~~~~~~~ 331 (434)
.+...+ .+ ++.-++||+|..|++|-.+ .+-|.+.|||++...++.. ..+.+..+.
T Consensus 293 e~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd----~~PnalW~Wdlq~l~l~avLiQk~piraf~ 368 (447)
T KOG4497|consen 293 ETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRND----KYPNALWLWDLQNLKLHAVLIQKHPIRAFE 368 (447)
T ss_pred hhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecC----CCCceEEEEechhhhhhhhhhhccceeEEE
Confidence 001111 11 2334899999999999876 3478999999988776654 446788999
Q ss_pred EEcCCCCCCC
Q 013871 332 WKPVSPDKFG 341 (434)
Q Consensus 332 w~p~~~~~~~ 341 (434)
|.|..+.|.-
T Consensus 369 WdP~~prL~v 378 (447)
T KOG4497|consen 369 WDPGRPRLVV 378 (447)
T ss_pred eCCCCceEEE
Confidence 9999887653
No 86
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.79 E-value=9.7e-17 Score=142.20 Aligned_cols=262 Identities=10% Similarity=0.102 Sum_probs=182.6
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCC
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFP 81 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~ 81 (434)
|+.|.|||.+.+|+..+ +|+.|++||+...+....|.+. ..+.+++|.++...+..+.+++|+.+|++...
T Consensus 16 IS~v~f~~~~~~LLvss-----WDgslrlYdv~~~~l~~~~~~~----~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~ 86 (323)
T KOG1036|consen 16 ISSVKFSPSSSDLLVSS-----WDGSLRLYDVPANSLKLKFKHG----APLLDCAFADESTIVTGGLDGQVRRYDLNTGN 86 (323)
T ss_pred eeeEEEcCcCCcEEEEe-----ccCcEEEEeccchhhhhheecC----CceeeeeccCCceEEEeccCceEEEEEecCCc
Confidence 78999999999999988 9999999999877665555544 66778899987777777789999999998754
Q ss_pred CceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEE
Q 013871 82 KGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQ 161 (434)
Q Consensus 82 ~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~ 161 (434)
. ....-|.++|.++..++..+..|+ ++.+.+|++|+..+ ...+......+ .+.++ +-.|+.|++.+
T Consensus 87 ~-~~igth~~~i~ci~~~~~~~~vIs------gsWD~~ik~wD~R~---~~~~~~~d~~k-kVy~~--~v~g~~LvVg~- 152 (323)
T KOG1036|consen 87 E-DQIGTHDEGIRCIEYSYEVGCVIS------GSWDKTIKFWDPRN---KVVVGTFDQGK-KVYCM--DVSGNRLVVGT- 152 (323)
T ss_pred c-eeeccCCCceEEEEeeccCCeEEE------cccCccEEEEeccc---cccccccccCc-eEEEE--eccCCEEEEee-
Confidence 3 445567788999999987555554 57889999999864 22222211111 22233 34566776643
Q ss_pred ecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEE--Eecc-cc--e--eEEe
Q 013871 162 SDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATI--FNKK-CR--P--ILEL 234 (434)
Q Consensus 162 ~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l--~d~~-~~--~--~~~~ 234 (434)
.+... .+|.+........+-.-.-+..+.+++.-|++.-|++ ++.+|.|.+ +|.. .. . .+..
T Consensus 153 --~~r~v-------~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~--sSieGRVavE~~d~s~~~~skkyaFkC 221 (323)
T KOG1036|consen 153 --SDRKV-------LIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVV--SSIEGRVAVEYFDDSEEAQSKKYAFKC 221 (323)
T ss_pred --cCceE-------EEEEcccccchhhhccccceeEEEEEEEecCCCceEE--EeecceEEEEccCCchHHhhhceeEEe
Confidence 22222 2344432222111111112568899999997777774 777887766 4433 11 1 1111
Q ss_pred C---------CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcC
Q 013871 235 G---------SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTA 300 (434)
Q Consensus 235 ~---------~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~ 300 (434)
| --|||+|+|+|--..|++|| .||.|.+||..+.+.+..+... .+..++|+-||..||+|+++
T Consensus 222 Hr~~~~~~~~~yPVNai~Fhp~~~tfaTgG---sDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~sy 295 (323)
T KOG1036|consen 222 HRLSEKDTEIIYPVNAIAFHPIHGTFATGG---SDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASSY 295 (323)
T ss_pred eecccCCceEEEEeceeEeccccceEEecC---CCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEech
Confidence 2 24789999999999999999 6789999999999888777654 45669999999999999983
No 87
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.78 E-value=2.4e-17 Score=154.77 Aligned_cols=239 Identities=13% Similarity=0.185 Sum_probs=160.0
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEee----------cCcCCCCCCeeeecCCCc--EEEEecC
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQ----------KNMTKTTWPSIRFSSDEA--VACRMAT 69 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~----------~~~~~~~~~~~~~S~d~~--~la~~~~ 69 (434)
|.+++|||.|..|+..+ .....+|+| ..|..+..|.- ...|...++|..|.|+.+ +|.++.|
T Consensus 217 i~sl~ys~Tg~~iLvvs-----g~aqakl~D-RdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~D 290 (641)
T KOG0772|consen 217 INSLQYSVTGDQILVVS-----GSAQAKLLD-RDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYD 290 (641)
T ss_pred cceeeecCCCCeEEEEe-----cCcceeEEc-cCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCC
Confidence 78999999999888887 556788888 44544433321 122556778899999764 6666678
Q ss_pred CeEEEEeCCCCCC-ceeeeeecC-----CeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccc
Q 013871 70 NEIQFFDTTDFPK-GILYRLRVP-----GVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCS 143 (434)
Q Consensus 70 ~~i~v~~~~~~~~-~~~~~~~~~-----~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~ 143 (434)
++++||++++... ..+.+-... .++.++|+|+ +..||. +..+|.|++|++.+.. +
T Consensus 291 gtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrd-g~~iAa-----gc~DGSIQ~W~~~~~~----v--------- 351 (641)
T KOG0772|consen 291 GTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRD-GKLIAA-----GCLDGSIQIWDKGSRT----V--------- 351 (641)
T ss_pred CcEEEEecCCchhheeEEeeccCCCcccCceeeecCCC-cchhhh-----cccCCceeeeecCCcc----c---------
Confidence 9999999987532 111111111 2455566665 333432 2334556666653310 0
Q ss_pred eeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEE
Q 013871 144 TVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATI 223 (434)
Q Consensus 144 ~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l 223 (434)
+| .+.+. ..+ .....|.++.||+||++|+ +.+.|..+++
T Consensus 352 ------~p-------------------------~~~vk--~AH------~~g~~Itsi~FS~dg~~Ll--SRg~D~tLKv 390 (641)
T KOG0772|consen 352 ------RP-------------------------VMKVK--DAH------LPGQDITSISFSYDGNYLL--SRGFDDTLKV 390 (641)
T ss_pred ------cc-------------------------ceEee--ecc------CCCCceeEEEeccccchhh--hccCCCceee
Confidence 00 01110 111 0134799999999999999 5677889999
Q ss_pred Eecc--cceeEEe----CCcCeeEEEECCCCCeEEEEec---CCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCC
Q 013871 224 FNKK--CRPILEL----GSGPYNTVRWNPKGKFLCLAGF---GNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGR 292 (434)
Q Consensus 224 ~d~~--~~~~~~~----~~~~~~~i~~SP~g~~l~~~~~---~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~ 292 (434)
||++ .++++.. ...+-+.++|||+.++|++|.. +...|+++|||..+.+.+..+.-. .++.|.|+|-=+
T Consensus 391 WDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLN 470 (641)
T KOG0772|consen 391 WDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLN 470 (641)
T ss_pred eeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhh
Confidence 9997 3444443 3455678999999999999853 224689999999999888877654 455599999999
Q ss_pred EEEEEEcCCceeeCCcEEEE
Q 013871 293 YFMTATTAPRLQIDNGIKIF 312 (434)
Q Consensus 293 ~l~tas~~prl~~D~~i~iw 312 (434)
.|..++. ||+++|+
T Consensus 471 Qi~~gsg------dG~~~vy 484 (641)
T KOG0772|consen 471 QIFAGSG------DGTAHVY 484 (641)
T ss_pred heeeecC------CCceEEE
Confidence 9999888 9999985
No 88
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.78 E-value=1.4e-17 Score=147.39 Aligned_cols=272 Identities=11% Similarity=0.157 Sum_probs=193.3
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCC------------C------cEEEEEeecCcCCCCCCeeeecCCCcE
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTET------------G------EAVYQLFQKNMTKTTWPSIRFSSDEAV 63 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~------------g------~~~~~~~~~~~~~~~~~~~~~S~d~~~ 63 (434)
+++.+|||||.+++|++ .|..|+|.|++. | -.++++.. |.+.+.++.|.|-+..
T Consensus 115 cR~aafs~DG~lvATGs-----aD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYD---H~devn~l~FHPre~I 186 (430)
T KOG0640|consen 115 CRAAAFSPDGSLVATGS-----ADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYD---HVDEVNDLDFHPRETI 186 (430)
T ss_pred eeeeeeCCCCcEEEccC-----CcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhh---ccCcccceeecchhhe
Confidence 46889999999999998 899999999851 1 12445544 3478889999999999
Q ss_pred EEEec-CCeEEEEeCCCCCCceeee--eecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceee---e
Q 013871 64 ACRMA-TNEIQFFDTTDFPKGILYR--LRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLAR---R 137 (434)
Q Consensus 64 la~~~-~~~i~v~~~~~~~~~~~~~--~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~---~ 137 (434)
|++++ |++|++||..........+ ...+.|.+++|+|.+ .++++ +..-..+++|++.+ -+.... -
T Consensus 187 LiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsG-efllv-----gTdHp~~rlYdv~T---~QcfvsanPd 257 (430)
T KOG0640|consen 187 LISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSG-EFLLV-----GTDHPTLRLYDVNT---YQCFVSANPD 257 (430)
T ss_pred EEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCC-ceEEE-----ecCCCceeEEeccc---eeEeeecCcc
Confidence 99995 6799999987644322222 224579999999995 44443 22334789999977 333322 2
Q ss_pred eecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecC---CCCCeEEEEECcCCCEEEEEE
Q 013871 138 SFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR---KEGPVHDVQWSYSGSEFAVVY 214 (434)
Q Consensus 138 ~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~---~~~~i~~v~wspdg~~~av~~ 214 (434)
..|...++++.+|+.|+. .+. ...|..++.|.|-.+ .|.-++. ....|.+..|..+|+++. +
T Consensus 258 ~qht~ai~~V~Ys~t~~l-YvT--aSkDG~IklwDGVS~----------rCv~t~~~AH~gsevcSa~Ftkn~kyiL--s 322 (430)
T KOG0640|consen 258 DQHTGAITQVRYSSTGSL-YVT--ASKDGAIKLWDGVSN----------RCVRTIGNAHGGSEVCSAVFTKNGKYIL--S 322 (430)
T ss_pred cccccceeEEEecCCccE-EEE--eccCCcEEeeccccH----------HHHHHHHhhcCCceeeeEEEccCCeEEe--e
Confidence 346778899999999984 222 335667777766433 1222222 146889999999999888 6
Q ss_pred ccCCCeEEEEecc-cceeEEeC-------CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEee-CC--Cce
Q 013871 215 GFMPASATIFNKK-CRPILELG-------SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTR-AE--CSV 283 (434)
Q Consensus 215 g~~~~~v~l~d~~-~~~~~~~~-------~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~-~~--~~~ 283 (434)
..||..+++|.+. +..+..+. ....+...|+....|+++-.- ..+.+.-||.++...+.... +| .+.
T Consensus 323 SG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDE--as~slcsWdaRtadr~~l~slgHn~a~R 400 (430)
T KOG0640|consen 323 SGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDE--ASNSLCSWDARTADRVALLSLGHNGAVR 400 (430)
T ss_pred cCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEcccc--ccCceeeccccchhhhhhcccCCCCCce
Confidence 8899999999995 45555551 123456788888888887542 34789999998875444332 23 344
Q ss_pred EEEECCCCCEEEEEEcCCceeeCCcEEEEe
Q 013871 284 TSEWSPDGRYFMTATTAPRLQIDNGIKIFH 313 (434)
Q Consensus 284 ~~~wspdg~~l~tas~~prl~~D~~i~iw~ 313 (434)
.+.-||.+.-|+|++. |..+|.|-
T Consensus 401 ~i~HSP~~p~FmTcsd------D~raRFWy 424 (430)
T KOG0640|consen 401 WIVHSPVEPAFMTCSD------DFRARFWY 424 (430)
T ss_pred EEEeCCCCCceeeecc------cceeeeee
Confidence 4888999999999999 99999995
No 89
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=2.4e-17 Score=157.95 Aligned_cols=259 Identities=11% Similarity=0.119 Sum_probs=190.3
Q ss_pred CCCCeeeecCCCcEEEEe-cCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCC
Q 013871 50 TTWPSIRFSSDEAVACRM-ATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKD 128 (434)
Q Consensus 50 ~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~ 128 (434)
..|.++++.|-+-++..+ .+|.|+||+.++........+....|+...|-+-. .-+.+ +..+..|++|++.+
T Consensus 14 dRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRk-nWiv~-----GsDD~~IrVfnynt- 86 (794)
T KOG0276|consen 14 DRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARK-NWIVT-----GSDDMQIRVFNYNT- 86 (794)
T ss_pred CceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeecc-ceEEE-----ecCCceEEEEeccc-
Confidence 677799999998866655 78999999988754433333333345555554432 22221 35667999999988
Q ss_pred CCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecC-CCCCeEEEEECc-C
Q 013871 129 LQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR-KEGPVHDVQWSY-S 206 (434)
Q Consensus 129 ~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~-~~~~i~~v~wsp-d 206 (434)
...+.+...|...+.++.-+|.--+++. ++ .|-+.+.|.-+. .-.+...++ |+--|.+++|.| |
T Consensus 87 --~ekV~~FeAH~DyIR~iavHPt~P~vLt--sS-DDm~iKlW~we~---------~wa~~qtfeGH~HyVMqv~fnPkD 152 (794)
T KOG0276|consen 87 --GEKVKTFEAHSDYIRSIAVHPTLPYVLT--SS-DDMTIKLWDWEN---------EWACEQTFEGHEHYVMQVAFNPKD 152 (794)
T ss_pred --ceeeEEeeccccceeeeeecCCCCeEEe--cC-CccEEEEeeccC---------ceeeeeEEcCcceEEEEEEecCCC
Confidence 7888888899999999999998877543 22 456666543332 223333332 366788999999 5
Q ss_pred CCEEEEEEccCCCeEEEEecc-cceeEEe--CCcCeeEEEECCCCC--eEEEEecCCCCCeEEEEEccCCEEEEEeeCC-
Q 013871 207 GSEFAVVYGFMPASATIFNKK-CRPILEL--GSGPYNTVRWNPKGK--FLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE- 280 (434)
Q Consensus 207 g~~~av~~g~~~~~v~l~d~~-~~~~~~~--~~~~~~~i~~SP~g~--~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~- 280 (434)
.+.|| +++-|++|++|.+. ..+.+++ |...+|++.|=|-|. +|++|+.| -.|+|||.++..++.++++|
T Consensus 153 ~ntFa--S~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD---~tiKvWDyQtk~CV~TLeGHt 227 (794)
T KOG0276|consen 153 PNTFA--SASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADD---LTIKVWDYQTKSCVQTLEGHT 227 (794)
T ss_pred cccee--eeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCC---ceEEEeecchHHHHHHhhccc
Confidence 56788 68889999999984 3444444 899999999988774 99999855 49999999999999999987
Q ss_pred -CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCcee---eeeecccceeeEEEcCCCCCC
Q 013871 281 -CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLF---FKKMFDKLFQAEWKPVSPDKF 340 (434)
Q Consensus 281 -~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~~---~~~~~~~~~~~~w~p~~~~~~ 340 (434)
+++.+.|+|.=..|++|+. |+++||||-..-.+ .....+++|+++-.+....+.
T Consensus 228 ~Nvs~v~fhp~lpiiisgsE------DGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~ 285 (794)
T KOG0276|consen 228 NNVSFVFFHPELPIIISGSE------DGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIA 285 (794)
T ss_pred ccceEEEecCCCcEEEEecC------CccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEE
Confidence 7777999999999999999 99999999754322 223457888888877766543
No 90
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.78 E-value=4.9e-17 Score=141.32 Aligned_cols=234 Identities=17% Similarity=0.150 Sum_probs=166.2
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC------CeEEEE
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT------NEIQFF 75 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~------~~i~v~ 75 (434)
|||++.+-+.++|+|.+ .|.+++|||+++|+++.++... ..+..+.|+.+|.+++...+ ..|.+|
T Consensus 55 vW~~Did~~s~~liTGS-----AD~t~kLWDv~tGk~la~~k~~----~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~f 125 (327)
T KOG0643|consen 55 VWCCDIDWDSKHLITGS-----ADQTAKLWDVETGKQLATWKTN----SPVKRVDFSFGGNLILASTDKQMGYTCFVSVF 125 (327)
T ss_pred EEEEEecCCcceeeecc-----ccceeEEEEcCCCcEEEEeecC----CeeEEEeeccCCcEEEEEehhhcCcceEEEEE
Confidence 78888888999999988 8999999999999999998765 55668999999999988754 489999
Q ss_pred eCCCCC-----Cceeeee--ecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEE
Q 013871 76 DTTDFP-----KGILYRL--RVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLN 148 (434)
Q Consensus 76 ~~~~~~-----~~~~~~~--~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ 148 (434)
++.... .....++ +...+...-|+|.+..+++ +..++.|.+|++.+. .+.+.....|...+..|.
T Consensus 126 di~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~------Ghe~G~is~~da~~g--~~~v~s~~~h~~~Ind~q 197 (327)
T KOG0643|consen 126 DIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIA------GHEDGSISIYDARTG--KELVDSDEEHSSKINDLQ 197 (327)
T ss_pred EccCChhhhcccCceEEecCCccceeeeeecccCCEEEE------ecCCCcEEEEEcccC--ceeeechhhhcccccccc
Confidence 987432 1112222 2346888889998555554 467789999999873 244555677888899999
Q ss_pred ECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCC-eEE-----
Q 013871 149 WNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPA-SAT----- 222 (434)
Q Consensus 149 ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~-~v~----- 222 (434)
+++|.++.+.. ..|.+-+.+. +. . .+...+...+.||++.+++|.-..+++ .|..++ .|+
T Consensus 198 ~s~d~T~FiT~---s~Dttakl~D-------~~--t-l~v~Kty~te~PvN~aaisP~~d~Vil-gGGqeA~dVTTT~~r 263 (327)
T KOG0643|consen 198 FSRDRTYFITG---SKDTTAKLVD-------VR--T-LEVLKTYTTERPVNTAAISPLLDHVIL-GGGQEAMDVTTTSTR 263 (327)
T ss_pred ccCCcceEEec---ccCccceeee-------cc--c-eeeEEEeeecccccceecccccceEEe-cCCceeeeeeeeccc
Confidence 99999986432 2555555332 21 1 122333334789999999997766665 455443 222
Q ss_pred -------EEecc-cceeE--EeCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEcc
Q 013871 223 -------IFNKK-CRPIL--ELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV 269 (434)
Q Consensus 223 -------l~d~~-~~~~~--~~~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~ 269 (434)
+|++- .+.+- .-|=+++|+++|+|+|+..++|| .+|.|++.-.+
T Consensus 264 ~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGG---EDG~VR~h~Fd 317 (327)
T KOG0643|consen 264 AGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGG---EDGYVRLHHFD 317 (327)
T ss_pred ccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCC---CCceEEEEEec
Confidence 23321 22222 22679999999999999999988 78899987544
No 91
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=3.3e-17 Score=141.45 Aligned_cols=260 Identities=13% Similarity=0.177 Sum_probs=180.2
Q ss_pred eeeecC--CCcEEEEe-------cCCeEEEEeCCCCC-Cceeee-eecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEE
Q 013871 54 SIRFSS--DEAVACRM-------ATNEIQFFDTTDFP-KGILYR-LRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQI 122 (434)
Q Consensus 54 ~~~~S~--d~~~la~~-------~~~~i~v~~~~~~~-~~~~~~-~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i 122 (434)
+++||| ++++++.. ++|.|.|.++.... ...... ...+++.+++||+.....+... ..+|.++|
T Consensus 13 svqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a-----~GDGSLrl 87 (311)
T KOG0277|consen 13 SVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAA-----SGDGSLRL 87 (311)
T ss_pred eeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEE-----ecCceEEE
Confidence 789999 44444322 34799999986432 222222 2346899999999866555432 34579999
Q ss_pred EEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEE
Q 013871 123 YACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQ 202 (434)
Q Consensus 123 ~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~ 202 (434)
|+++.. ..||....-|+.++.++.|++......+.. .-|.+.|.|.+. .......-..++..|+..+
T Consensus 88 ~d~~~~--s~Pi~~~kEH~~EV~Svdwn~~~r~~~lts--SWD~TiKLW~~~---------r~~Sv~Tf~gh~~~Iy~a~ 154 (311)
T KOG0277|consen 88 FDLTMP--SKPIHKFKEHKREVYSVDWNTVRRRIFLTS--SWDGTIKLWDPN---------RPNSVQTFNGHNSCIYQAA 154 (311)
T ss_pred eccCCC--CcchhHHHhhhhheEEeccccccceeEEee--ccCCceEeecCC---------CCcceEeecCCccEEEEEe
Confidence 997654 678888889999999999999877765542 345555544321 1111111123578999999
Q ss_pred ECcC-CCEEEEEEccCCCeEEEEecc--cc-eeEEeCCcCeeEEEECCCCC-eEEEEecCCCCCeEEEEEccCCE-EEEE
Q 013871 203 WSYS-GSEFAVVYGFMPASATIFNKK--CR-PILELGSGPYNTVRWNPKGK-FLCLAGFGNLPGDMAFWDYVDGK-QLGT 276 (434)
Q Consensus 203 wspd-g~~~av~~g~~~~~v~l~d~~--~~-~~~~~~~~~~~~i~~SP~g~-~l~~~~~~~~~g~i~iwd~~~~~-~i~~ 276 (434)
|||- .+.|+ +.+.|+.++|||++ ++ .+...|...+.++.||...+ .|++|+ .|+.|+.||+++.+ .+..
T Consensus 155 ~sp~~~nlfa--s~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~---vd~~vr~wDir~~r~pl~e 229 (311)
T KOG0277|consen 155 FSPHIPNLFA--SASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGG---VDNLVRGWDIRNLRTPLFE 229 (311)
T ss_pred cCCCCCCeEE--EccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecC---CCceEEEEehhhcccccee
Confidence 9994 56677 56668899999997 22 23445788999999999765 666677 45699999999874 5666
Q ss_pred eeCC--CceEEEECCCCCE-EEEEEcCCceeeCCcEEEEeecCc--e--eeeeecccceeeEEEcCCCCCCCC
Q 013871 277 TRAE--CSVTSEWSPDGRY-FMTATTAPRLQIDNGIKIFHHNGS--L--FFKKMFDKLFQAEWKPVSPDKFGD 342 (434)
Q Consensus 277 ~~~~--~~~~~~wspdg~~-l~tas~~prl~~D~~i~iw~~~g~--~--~~~~~~~~~~~~~w~p~~~~~~~~ 342 (434)
+.+| .+..+.|||...- |++|+. |-++|||++.-. + .+..+.+-+..+.|++..+..+.+
T Consensus 230 L~gh~~AVRkvk~Sph~~~lLaSasY------DmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs 296 (311)
T KOG0277|consen 230 LNGHGLAVRKVKFSPHHASLLASASY------DMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVAS 296 (311)
T ss_pred ecCCceEEEEEecCcchhhHhhhccc------cceEEecccccchhhhhhhhccceEEeccccccccCceeee
Confidence 6777 4455999998665 556666 999999999632 2 233455668899999987766554
No 92
>PTZ00421 coronin; Provisional
Probab=99.77 E-value=1.5e-16 Score=158.51 Aligned_cols=220 Identities=9% Similarity=0.059 Sum_probs=147.4
Q ss_pred cceEEecC-CCcEEEEEecCCCCCCCcEEEEEcCCCc-------EEEEEeecCcCCCCCCeeeecCCC-cEEEEe-cCCe
Q 013871 2 LLLLTCLR-VGLIIQTFQKSSTPQEKNVILWKTETGE-------AVYQLFQKNMTKTTWPSIRFSSDE-AVACRM-ATNE 71 (434)
Q Consensus 2 V~~l~fSP-~g~~L~t~~~~~~~~d~~v~iWd~~~g~-------~~~~~~~~~~~~~~~~~~~~S~d~-~~la~~-~~~~ 71 (434)
|++++||| ++++|+|++ .|++|+|||+.++. .+..+..+ ...+.+++|+|++ .+|+++ .|++
T Consensus 78 V~~v~fsP~d~~~LaSgS-----~DgtIkIWdi~~~~~~~~~~~~l~~L~gH---~~~V~~l~f~P~~~~iLaSgs~Dgt 149 (493)
T PTZ00421 78 IIDVAFNPFDPQKLFTAS-----EDGTIMGWGIPEEGLTQNISDPIVHLQGH---TKKVGIVSFHPSAMNVLASAGADMV 149 (493)
T ss_pred EEEEEEcCCCCCEEEEEe-----CCCEEEEEecCCCccccccCcceEEecCC---CCcEEEEEeCcCCCCEEEEEeCCCE
Confidence 78999999 899999999 89999999997653 34455443 3667799999985 678776 5789
Q ss_pred EEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccc-eeEEEEC
Q 013871 72 IQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCS-TVQLNWN 150 (434)
Q Consensus 72 i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~-~~~~~ws 150 (434)
|+|||+...........+...|.+++|+|+ +..++. .+.++.|+||++.+ ++.+.....+... ...+.|.
T Consensus 150 VrIWDl~tg~~~~~l~~h~~~V~sla~spd-G~lLat-----gs~Dg~IrIwD~rs---g~~v~tl~~H~~~~~~~~~w~ 220 (493)
T PTZ00421 150 VNVWDVERGKAVEVIKCHSDQITSLEWNLD-GSLLCT-----TSKDKKLNIIDPRD---GTIVSSVEAHASAKSQRCLWA 220 (493)
T ss_pred EEEEECCCCeEEEEEcCCCCceEEEEEECC-CCEEEE-----ecCCCEEEEEECCC---CcEEEEEecCCCCcceEEEEc
Confidence 999999875433334445667999999998 455543 35678999999987 6677666666543 3467899
Q ss_pred CCCCeEEEEEEe-cccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccc
Q 013871 151 RGSTGLLAVAQS-DVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR 229 (434)
Q Consensus 151 ~~G~~l~~~~~~-~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~ 229 (434)
+++..++..... ..|... .||.+...........+.....+....|+++++.+++ .|..|+.|++||+...
T Consensus 221 ~~~~~ivt~G~s~s~Dr~V-------klWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~l-ggkgDg~Iriwdl~~~ 292 (493)
T PTZ00421 221 KRKDLIITLGCSKSQQRQI-------MLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYI-GSKGEGNIRCFELMNE 292 (493)
T ss_pred CCCCeEEEEecCCCCCCeE-------EEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEE-EEeCCCeEEEEEeeCC
Confidence 988876543211 112222 2333321111111222333455667789999998876 3545889999999754
Q ss_pred ee-EEe---CCcCeeEEEECC
Q 013871 230 PI-LEL---GSGPYNTVRWNP 246 (434)
Q Consensus 230 ~~-~~~---~~~~~~~i~~SP 246 (434)
.. ... ...+...++|.|
T Consensus 293 ~~~~~~~~~s~~~~~g~~~~p 313 (493)
T PTZ00421 293 RLTFCSSYSSVEPHKGLCMMP 313 (493)
T ss_pred ceEEEeeccCCCCCcceEecc
Confidence 33 222 234566677776
No 93
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=2.5e-16 Score=157.27 Aligned_cols=256 Identities=16% Similarity=0.236 Sum_probs=175.2
Q ss_pred ceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCC-cEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCC
Q 013871 3 LLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETG-EAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDF 80 (434)
Q Consensus 3 ~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g-~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~ 80 (434)
+.|+|.|+|.+|+|++ .|+.|++|+..+- +...++... +..+ .....++.+|+++ .+++|++|..+++
T Consensus 17 t~i~~d~~gefi~tcg-----sdg~ir~~~~~sd~e~P~ti~~~---g~~v--~~ia~~s~~f~~~s~~~tv~~y~fps~ 86 (933)
T KOG1274|consen 17 TLICYDPDGEFICTCG-----SDGDIRKWKTNSDEEEPETIDIS---GELV--SSIACYSNHFLTGSEQNTVLRYKFPSG 86 (933)
T ss_pred EEEEEcCCCCEEEEec-----CCCceEEeecCCcccCCchhhcc---Ccee--EEEeecccceEEeeccceEEEeeCCCC
Confidence 5789999999999999 8999999987655 333332211 1222 3445566677766 5689999999887
Q ss_pred CCc-eeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEE
Q 013871 81 PKG-ILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAV 159 (434)
Q Consensus 81 ~~~-~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~ 159 (434)
... ...++.. .++.++++-+ +..++. ++.+-.|++.++.. .........+++.+.++.++|.|+.|++.
T Consensus 87 ~~~~iL~Rftl-p~r~~~v~g~-g~~iaa-----gsdD~~vK~~~~~D---~s~~~~lrgh~apVl~l~~~p~~~fLAvs 156 (933)
T KOG1274|consen 87 EEDTILARFTL-PIRDLAVSGS-GKMIAA-----GSDDTAVKLLNLDD---SSQEKVLRGHDAPVLQLSYDPKGNFLAVS 156 (933)
T ss_pred Cccceeeeeec-cceEEEEecC-CcEEEe-----ecCceeEEEEeccc---cchheeecccCCceeeeeEcCCCCEEEEE
Confidence 643 2233433 3778888877 445543 35556788888877 66777788899999999999999987764
Q ss_pred EEecccccCceeecceeEEEEeeCCcceeeeecC---------CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-c
Q 013871 160 AQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR---------KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-R 229 (434)
Q Consensus 160 ~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~---------~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~-~ 229 (434)
. .|...+ +|.++ .. .....+. ....+..++|+|+|..|++. ..++.|.+|+..+ .
T Consensus 157 s---~dG~v~-------iw~~~--~~-~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~--~~d~~Vkvy~r~~we 221 (933)
T KOG1274|consen 157 S---CDGKVQ-------IWDLQ--DG-ILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVP--PVDNTVKVYSRKGWE 221 (933)
T ss_pred e---cCceEE-------EEEcc--cc-hhhhhcccCCccccccccceeeeeeecCCCCeEEee--ccCCeEEEEccCCce
Confidence 3 333322 33332 11 1111111 13456789999999999974 3467999998863 4
Q ss_pred eeEEe----CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceEEEECCCCCEEEEEE
Q 013871 230 PILEL----GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTAT 298 (434)
Q Consensus 230 ~~~~~----~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~~~wspdg~~l~tas 298 (434)
..+.+ +...++.+.|||+|+|||.++ ++|.|.|||+++.+. ......+.+++|-|++..|-.-+
T Consensus 222 ~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~---~~g~I~vWnv~t~~~--~~~~~~Vc~~aw~p~~n~it~~~ 289 (933)
T KOG1274|consen 222 LQFKLRDKLSSSKFSDLQWSPNGKYIAAST---LDGQILVWNVDTHER--HEFKRAVCCEAWKPNANAITLIT 289 (933)
T ss_pred eheeecccccccceEEEEEcCCCcEEeeec---cCCcEEEEecccchh--ccccceeEEEecCCCCCeeEEEe
Confidence 44444 344489999999999999998 778999999997332 11122566699999987655444
No 94
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.76 E-value=3.2e-17 Score=162.59 Aligned_cols=235 Identities=16% Similarity=0.226 Sum_probs=155.2
Q ss_pred CCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceeeeeecC----------CeeEEEEeCCCCCeEE-EEecCCC-CC
Q 013871 50 TTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRLRVP----------GVAAFEVSKAPGSHVA-VFVPESK-GS 116 (434)
Q Consensus 50 ~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~~~~----------~v~~~~~sp~~~~~ia-~~~~~~~-~~ 116 (434)
..| ++.||+||+|||+++ |+.|+||.+-+............ .+.....++. ..-. .-.+... ..
T Consensus 269 aIw-~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~--~~~~~~s~~~~~~~s 345 (712)
T KOG0283|consen 269 AIW-AMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEE--KISSRTSSSRKGSQS 345 (712)
T ss_pred cEE-EEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccc--cccccccccccccCC
Confidence 556 999999999999985 67999999865222110000000 0000001110 0000 0000000 11
Q ss_pred CceEEEEEcCCCC-CCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCC
Q 013871 117 PASVQIYACGKDL-QSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKE 195 (434)
Q Consensus 117 ~~~v~i~~~~~~~-~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~ 195 (434)
+. +. .....+. ..+|++...+|.+++..+.||.++- | .+...|+|.+ ||.+ +..+|.-.+.|.
T Consensus 346 ~~-~~-~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~f-L---LSSSMDKTVR-------LWh~---~~~~CL~~F~Hn 409 (712)
T KOG0283|consen 346 PC-VL-LPLKAFVFSEKPFCEFKGHTADILDLSWSKNNF-L---LSSSMDKTVR-------LWHP---GRKECLKVFSHN 409 (712)
T ss_pred cc-cc-CCCccccccccchhhhhccchhheecccccCCe-e---EeccccccEE-------eecC---CCcceeeEEecC
Confidence 11 11 1111110 1678888889999999999998753 2 2344788887 4444 344677777889
Q ss_pred CCeEEEEECc-CCCEEEEEEccCCCeEEEEecccceeEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCE
Q 013871 196 GPVHDVQWSY-SGSEFAVVYGFMPASATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK 272 (434)
Q Consensus 196 ~~i~~v~wsp-dg~~~av~~g~~~~~v~l~d~~~~~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~ 272 (434)
.-|++|+|+| |.++|+ +|+-|++++||++....+... -..-|++++|+|||++.++|. ..|.++||++...+
T Consensus 410 dfVTcVaFnPvDDryFi--SGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt---~~G~C~fY~t~~lk 484 (712)
T KOG0283|consen 410 DFVTCVAFNPVDDRYFI--SGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGT---FNGYCRFYDTEGLK 484 (712)
T ss_pred CeeEEEEecccCCCcEe--ecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEE---eccEEEEEEccCCe
Confidence 9999999999 555666 899999999999976666655 257899999999999999999 66899999999876
Q ss_pred EEEEee----------CCCceEEEECCCCC-EEEEEEcCCceeeCCcEEEEee
Q 013871 273 QLGTTR----------AECSVTSEWSPDGR-YFMTATTAPRLQIDNGIKIFHH 314 (434)
Q Consensus 273 ~i~~~~----------~~~~~~~~wspdg~-~l~tas~~prl~~D~~i~iw~~ 314 (434)
.....+ ++.++.+++.|... .+++.+. |..|||+|.
T Consensus 485 ~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSn------DSrIRI~d~ 531 (712)
T KOG0283|consen 485 LVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSN------DSRIRIYDG 531 (712)
T ss_pred EEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecC------CCceEEEec
Confidence 554332 23577788886543 4777777 999999997
No 95
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.76 E-value=1.4e-15 Score=150.42 Aligned_cols=312 Identities=16% Similarity=0.203 Sum_probs=195.0
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-c-CCeEEEEeCCC
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-A-TNEIQFFDTTD 79 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~-~~~i~v~~~~~ 79 (434)
|+++.=||-=..++.+. .++.|.|+++..++.+.+|.+.. ..++.+.|.-||..+... . .|.+.+||++.
T Consensus 205 IT~ieqsPaLDVVaiG~-----~~G~ViifNlK~dkil~sFk~d~---g~VtslSFrtDG~p~las~~~~G~m~~wDLe~ 276 (910)
T KOG1539|consen 205 ITAIEQSPALDVVAIGL-----ENGTVIIFNLKFDKILMSFKQDW---GRVTSLSFRTDGNPLLASGRSNGDMAFWDLEK 276 (910)
T ss_pred eeEeccCCcceEEEEec-----cCceEEEEEcccCcEEEEEEccc---cceeEEEeccCCCeeEEeccCCceEEEEEcCC
Confidence 44444455444555444 78999999999999999998853 678899999999865544 3 47999999987
Q ss_pred CCCceeee-eecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEE--EcCCCCCCCceeeeeecccceeEEEEC-CCCCe
Q 013871 80 FPKGILYR-LRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIY--ACGKDLQSQPLARRSFFRCSTVQLNWN-RGSTG 155 (434)
Q Consensus 80 ~~~~~~~~-~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~--~~~~~~~~~~i~~~~~~~~~~~~~~ws-~~G~~ 155 (434)
.......+ .|..+|....+-|+ .+.+.. .+.+..+++| |..... .+.++.+.+|.+.-.++++- .+|..
T Consensus 277 kkl~~v~~nah~~sv~~~~fl~~-epVl~t-----a~~DnSlk~~vfD~~dg~-pR~LR~R~GHs~Pp~~irfy~~~g~~ 349 (910)
T KOG1539|consen 277 KKLINVTRNAHYGSVTGATFLPG-EPVLVT-----AGADNSLKVWVFDSGDGV-PRLLRSRGGHSAPPSCIRFYGSQGHF 349 (910)
T ss_pred CeeeeeeeccccCCcccceecCC-CceEee-----ccCCCceeEEEeeCCCCc-chheeeccCCCCCchheeeeccCcEE
Confidence 54332222 55566777776665 333321 1222333333 322211 23344444444444444443 22222
Q ss_pred EEEEEEecccccCcee--------------------------------------------------------ecceeEEE
Q 013871 156 LLAVAQSDVDKTNQSY--------------------------------------------------------YGESKLNY 179 (434)
Q Consensus 156 l~~~~~~~~d~~~~~~--------------------------------------------------------~g~~~l~~ 179 (434)
++. +. .|.+-+++ .|+..++.
T Consensus 350 ils-a~--~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~t 426 (910)
T KOG1539|consen 350 ILS-AK--QDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYT 426 (910)
T ss_pred EEe-cc--cCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEE
Confidence 211 11 11111100 12222233
Q ss_pred EeeCCcceeeeecCCC------CCeEEEEECcCCCEEEEEEccCCCeEEEEecccce-eEEe-----CCcCeeEEEECCC
Q 013871 180 LTTDGTHEGLVPLRKE------GPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP-ILEL-----GSGPYNTVRWNPK 247 (434)
Q Consensus 180 l~~~~~~~~~v~l~~~------~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~-~~~~-----~~~~~~~i~~SP~ 247 (434)
++..........|++. ..+.+++.++-|+..++ |+..+.|.+|+++... ..+| |.+++..++..--
T Consensus 427 W~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~I--G~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~ 504 (910)
T KOG1539|consen 427 WNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFI--GYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGT 504 (910)
T ss_pred EeccCcccccEEecCccccccCcceEEEEEeccCceEEE--eccCCeEEEEEcccCeeecccccCccccCceeEEEecCC
Confidence 3322222222333332 56788999988865553 7888999999997543 3334 7889999999888
Q ss_pred CCeEEEEecCCCCCeEEEEEccCCEEEEE-----------------------------------------eeCC--CceE
Q 013871 248 GKFLCLAGFGNLPGDMAFWDYVDGKQLGT-----------------------------------------TRAE--CSVT 284 (434)
Q Consensus 248 g~~l~~~~~~~~~g~i~iwd~~~~~~i~~-----------------------------------------~~~~--~~~~ 284 (434)
++.+++++ .+|.+.+||.+++..+.. +.+| .++.
T Consensus 505 n~~~vsa~---~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd 581 (910)
T KOG1539|consen 505 NRLLVSAG---ADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITD 581 (910)
T ss_pred CceEEEcc---CcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceee
Confidence 89999998 778999999886542221 2223 4566
Q ss_pred EEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceeeeeecc-cceeeEEEcCCCCCCCC
Q 013871 285 SEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKKMFD-KLFQAEWKPVSPDKFGD 342 (434)
Q Consensus 285 ~~wspdg~~l~tas~~prl~~D~~i~iw~~-~g~~~~~~~~~-~~~~~~w~p~~~~~~~~ 342 (434)
++|||||+.|++|+. |++|++||+ +|.++-....+ ....+.++|.+..|...
T Consensus 582 ~~FS~DgrWlisasm------D~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~ 635 (910)
T KOG1539|consen 582 MTFSPDGRWLISASM------DSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATV 635 (910)
T ss_pred eEeCCCCcEEEEeec------CCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEE
Confidence 899999999999999 999999998 67777666554 56778888888776665
No 96
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.76 E-value=2.9e-16 Score=145.89 Aligned_cols=265 Identities=12% Similarity=0.153 Sum_probs=184.6
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEe-e-------------c-CcCCCCCCeeeecCCCcEEEE
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLF-Q-------------K-NMTKTTWPSIRFSSDEAVACR 66 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~-~-------------~-~~~~~~~~~~~~S~d~~~la~ 66 (434)
|.+|.+|||++|..+++ .++.|.=|++.+|...+-+. . . ..|...+.+++.|+||+|||+
T Consensus 145 ~~~vals~d~~~~fsas-----k~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylat 219 (479)
T KOG0299|consen 145 VTSVALSPDDKRVFSAS-----KDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLAT 219 (479)
T ss_pred ceEEEeeccccceeecC-----CCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEe
Confidence 67999999999999998 78899999999987542111 1 0 023345568999999999999
Q ss_pred ec-CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeeccccee
Q 013871 67 MA-TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTV 145 (434)
Q Consensus 67 ~~-~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~ 145 (434)
+. +..|+||+..+.+.....+.|-..|.+++|=-+.+.+++ .+.+..|++|++.. ..-+.+.-.|...+.
T Consensus 220 gg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys------~s~Drsvkvw~~~~---~s~vetlyGHqd~v~ 290 (479)
T KOG0299|consen 220 GGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYS------ASADRSVKVWSIDQ---LSYVETLYGHQDGVL 290 (479)
T ss_pred cCCCceEEEecCcccchhhcccccccceeeeeeecCccceee------eecCCceEEEehhH---hHHHHHHhCCcccee
Confidence 95 669999999987765556677777888877665444443 35677899999977 455555555666665
Q ss_pred EEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEe
Q 013871 146 QLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFN 225 (434)
Q Consensus 146 ~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d 225 (434)
.+.-...+..+.+ ...|.+.+. |.+ ......+-....+.+-+++|- +..+|+ +|+++|.|.||+
T Consensus 291 ~IdaL~reR~vtV---GgrDrT~rl-------wKi---~eesqlifrg~~~sidcv~~I-n~~Hfv--sGSdnG~IaLWs 354 (479)
T KOG0299|consen 291 GIDALSRERCVTV---GGRDRTVRL-------WKI---PEESQLIFRGGEGSIDCVAFI-NDEHFV--SGSDNGSIALWS 354 (479)
T ss_pred eechhcccceEEe---ccccceeEE-------Eec---cccceeeeeCCCCCeeeEEEe-ccccee--eccCCceEEEee
Confidence 5554444443322 235666553 333 111122222336788889987 456777 699999999999
Q ss_pred c-ccceeEEe---C---Cc--------CeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC----EEEEEeeCC-CceEE
Q 013871 226 K-KCRPILEL---G---SG--------PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG----KQLGTTRAE-CSVTS 285 (434)
Q Consensus 226 ~-~~~~~~~~---~---~~--------~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~----~~i~~~~~~-~~~~~ 285 (434)
+ +..+++.. | .. -+++++-.|...++|+|+ .+|.|++|-+.++ ..+..+... .+..+
T Consensus 355 ~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS---~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl 431 (479)
T KOG0299|consen 355 LLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGS---WSGCVRLWKIEDGLRAINLLYSLSLVGFVNSL 431 (479)
T ss_pred ecccCceeEeeccccccCCccccccccceeeeEecccCceEEecC---CCCceEEEEecCCccccceeeecccccEEEEE
Confidence 8 55666643 1 11 578899999999999988 5689999999877 344444433 44559
Q ss_pred EECCCCCEEEEEEc
Q 013871 286 EWSPDGRYFMTATT 299 (434)
Q Consensus 286 ~wspdg~~l~tas~ 299 (434)
+|+++|++|++|..
T Consensus 432 ~f~~sgk~ivagiG 445 (479)
T KOG0299|consen 432 AFSNSGKRIVAGIG 445 (479)
T ss_pred EEccCCCEEEEecc
Confidence 99999998877754
No 97
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.76 E-value=1.6e-16 Score=143.17 Aligned_cols=261 Identities=13% Similarity=0.146 Sum_probs=195.8
Q ss_pred CCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcC
Q 013871 48 TKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACG 126 (434)
Q Consensus 48 ~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~ 126 (434)
|..-++|+++-|-+.+|++++ |.+|.|||+...........+++.|..+++|+- .+++- +.+.+..|+-||+.
T Consensus 150 HlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~r-HpYlF-----s~gedk~VKCwDLe 223 (460)
T KOG0285|consen 150 HLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKR-HPYLF-----SAGEDKQVKCWDLE 223 (460)
T ss_pred ccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeeccc-CceEE-----EecCCCeeEEEech
Confidence 346678999999999999995 679999999987665556667888999999987 44443 23677899999998
Q ss_pred CCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcC
Q 013871 127 KDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYS 206 (434)
Q Consensus 127 ~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspd 206 (434)
. ++.|+....|-..+.++...|.-..| .+...|.+.+.|+ +.+ .....+...+..+|.++.+.|.
T Consensus 224 ~---nkvIR~YhGHlS~V~~L~lhPTldvl---~t~grDst~RvWD-------iRt--r~~V~~l~GH~~~V~~V~~~~~ 288 (460)
T KOG0285|consen 224 Y---NKVIRHYHGHLSGVYCLDLHPTLDVL---VTGGRDSTIRVWD-------IRT--RASVHVLSGHTNPVASVMCQPT 288 (460)
T ss_pred h---hhhHHHhccccceeEEEeccccceeE---EecCCcceEEEee-------ecc--cceEEEecCCCCcceeEEeecC
Confidence 8 88999888888999999999876543 3344666666443 321 1122223336889999999998
Q ss_pred CCEEEEEEccCCCeEEEEecccc-eeEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCce
Q 013871 207 GSEFAVVYGFMPASATIFNKKCR-PILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSV 283 (434)
Q Consensus 207 g~~~av~~g~~~~~v~l~d~~~~-~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~ 283 (434)
..+++ +|++|++|++||++.. ....+ |+..+.+++.+|....+|+++.+| |+-|++-.++.+..+.+|..+
T Consensus 289 dpqvi--t~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dn----ik~w~~p~g~f~~nlsgh~~i 362 (460)
T KOG0285|consen 289 DPQVI--TGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDN----IKQWKLPEGEFLQNLSGHNAI 362 (460)
T ss_pred CCceE--EecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCcc----ceeccCCccchhhccccccce
Confidence 87777 7999999999999643 33333 788899999999999999998764 999999999999888888443
Q ss_pred --EEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceeeeee-----c------ccceeeEEEcCCCCCCCC
Q 013871 284 --TSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKKM-----F------DKLFQAEWKPVSPDKFGD 342 (434)
Q Consensus 284 --~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~~~~~~-----~------~~~~~~~w~p~~~~~~~~ 342 (434)
.++-..|| ++++|+. .+.+..||+.....|+.- . ..++..+|...+..|++.
T Consensus 363 intl~~nsD~-v~~~G~d------ng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~ 427 (460)
T KOG0285|consen 363 INTLSVNSDG-VLVSGGD------NGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITG 427 (460)
T ss_pred eeeeeeccCc-eEEEcCC------ceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEec
Confidence 37777775 5567776 778999999554333321 1 136777788777777765
No 98
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.76 E-value=4.3e-16 Score=151.47 Aligned_cols=304 Identities=12% Similarity=0.174 Sum_probs=212.8
Q ss_pred eEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEE---EEEeecCcCCCCCCeee------------ecCCCcEEEEec
Q 013871 4 LLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAV---YQLFQKNMTKTTWPSIR------------FSSDEAVACRMA 68 (434)
Q Consensus 4 ~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~---~~~~~~~~~~~~~~~~~------------~S~d~~~la~~~ 68 (434)
++.|+|....|...- .|..|.|||+.+-..+ +.+..++. ..| .+. --|-+.+..+..
T Consensus 329 A~~Fdet~~klscVY-----ndhSlYvWDvrD~~kvgk~~s~lyHS~--ciW-~Ve~~p~nv~~~~~aclp~~cF~TCSs 400 (1080)
T KOG1408|consen 329 ACQFDETTDKLSCVY-----NDHSLYVWDVRDVNKVGKCSSMLYHSA--CIW-DVENLPCNVHSPTAACLPRGCFTTCSS 400 (1080)
T ss_pred EEEecCCCceEEEEE-----cCceEEEEeccccccccceeeeeeccc--eee-eeccccccccCcccccCCccceeEecC
Confidence 678999999988766 7999999999764432 33333321 233 211 123455666668
Q ss_pred CCeEEEEeCCCCCCceee----------ee---------------------------ecCCeeEEEEeCCCCCeEEEEec
Q 013871 69 TNEIQFFDTTDFPKGILY----------RL---------------------------RVPGVAAFEVSKAPGSHVAVFVP 111 (434)
Q Consensus 69 ~~~i~v~~~~~~~~~~~~----------~~---------------------------~~~~v~~~~~sp~~~~~ia~~~~ 111 (434)
|++|++|++......... ++ .--+++++++||+ +.++|
T Consensus 401 D~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~-gqhLA---- 475 (1080)
T KOG1408|consen 401 DGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPD-GQHLA---- 475 (1080)
T ss_pred CCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCC-cceec----
Confidence 999999998541111110 00 0116889999998 66776
Q ss_pred CCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeee
Q 013871 112 ESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVP 191 (434)
Q Consensus 112 ~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~ 191 (434)
++..-|.+++|++.+ -...+....|..++.++.++..-...-++++...|. -||.+++...+....+
T Consensus 476 -sGDr~GnlrVy~Lq~---l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdR---------lIHV~Dv~rny~l~qt 542 (1080)
T KOG1408|consen 476 -SGDRGGNLRVYDLQE---LEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDR---------LIHVYDVKRNYDLVQT 542 (1080)
T ss_pred -ccCccCceEEEEehh---hhhhhheecccceeEEEeecCchhhhHhhhhccCCc---------eEEEEecccccchhhh
Confidence 456678999999988 677778888999999998876432222233333332 2566677666665556
Q ss_pred cC-CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc----ce-----eEEeCCcCeeEEEECCCCCeEEEEecCCCCC
Q 013871 192 LR-KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC----RP-----ILELGSGPYNTVRWNPKGKFLCLAGFGNLPG 261 (434)
Q Consensus 192 l~-~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~----~~-----~~~~~~~~~~~i~~SP~g~~l~~~~~~~~~g 261 (434)
++ +...|.++.|..+|-.+-++++.-|..+ .|+... .. ...+.+..+..++.-|..++++++. .|.
T Consensus 543 ld~HSssITsvKFa~~gln~~MiscGADksi-mFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~c---QDr 618 (1080)
T KOG1408|consen 543 LDGHSSSITSVKFACNGLNRKMISCGADKSI-MFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVC---QDR 618 (1080)
T ss_pred hcccccceeEEEEeecCCceEEEeccCchhh-heehhccccCceeccccccccccceEEEeeeCCCcceEEEEe---ccc
Confidence 65 4789999999998866665566666444 444321 11 1223456677899999999999999 455
Q ss_pred eEEEEEccCCEEEEEeeCC-----CceEEEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceeeee--ecccceeeEEE
Q 013871 262 DMAFWDYVDGKQLGTTRAE-----CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKK--MFDKLFQAEWK 333 (434)
Q Consensus 262 ~i~iwd~~~~~~i~~~~~~-----~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~-~g~~~~~~--~~~~~~~~~w~ 333 (434)
+|+|||++++++...|++. ..+-+...|.|-||+|..+ |.++.++|| +|+++..+ +.+-+..+.|.
T Consensus 619 nirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScs------dktl~~~Df~sgEcvA~m~GHsE~VTG~kF~ 692 (1080)
T KOG1408|consen 619 NIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCS------DKTLCFVDFVSGECVAQMTGHSEAVTGVKFL 692 (1080)
T ss_pred ceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeec------CCceEEEEeccchhhhhhcCcchheeeeeec
Confidence 9999999999999999763 3445899999999999999 999999998 67776654 55678899999
Q ss_pred cCCCCCCCCc
Q 013871 334 PVSPDKFGDI 343 (434)
Q Consensus 334 p~~~~~~~~~ 343 (434)
++...|++..
T Consensus 693 nDCkHlISvs 702 (1080)
T KOG1408|consen 693 NDCKHLISVS 702 (1080)
T ss_pred ccchhheeec
Confidence 9999888753
No 99
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.75 E-value=8.9e-18 Score=144.55 Aligned_cols=216 Identities=14% Similarity=0.186 Sum_probs=156.6
Q ss_pred CCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC-CeEEEEeCCCCCCc-eeeeeecCCeeEEEEeCC
Q 013871 24 QEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT-NEIQFFDTTDFPKG-ILYRLRVPGVAAFEVSKA 101 (434)
Q Consensus 24 ~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~-~~i~v~~~~~~~~~-~~~~~~~~~v~~~~~sp~ 101 (434)
.|=+-+|||..+|.++++|.++ -.+..++|+.|.++|++++. .-++|||++..... .....+..+|+.+.|.-.
T Consensus 79 adftakvw~a~tgdelhsf~hk----hivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~e 154 (334)
T KOG0278|consen 79 ADFTAKVWDAVTGDELHSFEHK----HIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHE 154 (334)
T ss_pred ccchhhhhhhhhhhhhhhhhhh----heeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEecc
Confidence 5667899999999999999876 56778999999999999865 58999999875532 224456678999888876
Q ss_pred CCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEe
Q 013871 102 PGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLT 181 (434)
Q Consensus 102 ~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~ 181 (434)
...++. ...++.||+||..+ +..+.++ +++..+.++..+++|..|.+. ...+ +.+++
T Consensus 155 D~~iLS------Sadd~tVRLWD~rT---gt~v~sL-~~~s~VtSlEvs~dG~ilTia----~gss---------V~Fwd 211 (334)
T KOG0278|consen 155 DKCILS------SADDKTVRLWDHRT---GTEVQSL-EFNSPVTSLEVSQDGRILTIA----YGSS---------VKFWD 211 (334)
T ss_pred CceEEe------eccCCceEEEEecc---CcEEEEE-ecCCCCcceeeccCCCEEEEe----cCce---------eEEec
Confidence 433333 24567899999987 5555544 457788899999999976542 1111 22222
Q ss_pred eCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-cceeEEe---CCcCeeEEEECCCCCeEEEEecC
Q 013871 182 TDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL---GSGPYNTVRWNPKGKFLCLAGFG 257 (434)
Q Consensus 182 ~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~-~~~~~~~---~~~~~~~i~~SP~g~~l~~~~~~ 257 (434)
...- ......+-...|.+...+|+...|+ +|..|..++.||.. ++.+-.+ |.++|.|+.|||+|...++|+
T Consensus 212 aksf-~~lKs~k~P~nV~SASL~P~k~~fV--aGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGS-- 286 (334)
T KOG0278|consen 212 AKSF-GLLKSYKMPCNVESASLHPKKEFFV--AGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGS-- 286 (334)
T ss_pred cccc-cceeeccCccccccccccCCCceEE--ecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccC--
Confidence 2111 1111112245788999999885554 58889999999985 4444443 789999999999999999888
Q ss_pred CCCCeEEEEEccCCE
Q 013871 258 NLPGDMAFWDYVDGK 272 (434)
Q Consensus 258 ~~~g~i~iwd~~~~~ 272 (434)
.||+|+||.+..++
T Consensus 287 -EDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 287 -EDGTIRLWQTTPGK 300 (334)
T ss_pred -CCceEEEEEecCCC
Confidence 78999999977553
No 100
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=1.3e-14 Score=123.32 Aligned_cols=264 Identities=14% Similarity=0.219 Sum_probs=177.1
Q ss_pred CCCCeeeecCCCcEEEEecC-CeEEEEeCCCCCCc-----------ee----eeeecCCeeEEEEeCCCCCeEEEEecCC
Q 013871 50 TTWPSIRFSSDEAVACRMAT-NEIQFFDTTDFPKG-----------IL----YRLRVPGVAAFEVSKAPGSHVAVFVPES 113 (434)
Q Consensus 50 ~~~~~~~~S~d~~~la~~~~-~~i~v~~~~~~~~~-----------~~----~~~~~~~v~~~~~sp~~~~~ia~~~~~~ 113 (434)
..+++++|.|.|.+.|.+++ .+++|-..+..... .+ .+.|...|.+.+|||+ +..|+.
T Consensus 33 qairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~-geliat----- 106 (350)
T KOG0641|consen 33 QAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPC-GELIAT----- 106 (350)
T ss_pred hheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCc-cCeEEe-----
Confidence 56779999999999998876 47776654332110 00 1123446999999999 667763
Q ss_pred CCCCceEEEEEcCCCCC--CCceeeeeecccceeEEEECC---CCCeEEEEEEecccccCceeecceeEEEEeeCCccee
Q 013871 114 KGSPASVQIYACGKDLQ--SQPLARRSFFRCSTVQLNWNR---GSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEG 188 (434)
Q Consensus 114 ~~~~~~v~i~~~~~~~~--~~~i~~~~~~~~~~~~~~ws~---~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~ 188 (434)
+..+..|++.......- ...-...+.|...+..+.|-. .|..|++.+.. |.-++|.-+...+...
T Consensus 107 gsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~ga----------gdc~iy~tdc~~g~~~ 176 (350)
T KOG0641|consen 107 GSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGA----------GDCKIYITDCGRGQGF 176 (350)
T ss_pred cCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCC----------CcceEEEeecCCCCcc
Confidence 45556777776643210 112223444555666666643 23444432211 3344565554433222
Q ss_pred eeecCCCCCeEEE-EECcCCCEEEEEEccCCCeEEEEecccce-eEE----eC-----CcCeeEEEECCCCCeEEEEecC
Q 013871 189 LVPLRKEGPVHDV-QWSYSGSEFAVVYGFMPASATIFNKKCRP-ILE----LG-----SGPYNTVRWNPKGKFLCLAGFG 257 (434)
Q Consensus 189 ~v~l~~~~~i~~v-~wspdg~~~av~~g~~~~~v~l~d~~~~~-~~~----~~-----~~~~~~i~~SP~g~~l~~~~~~ 257 (434)
..-..+.|.|.++ .|+ |-.|+ +|+.|.+|++||++.+. +.. ++ ...+..++..|.|++|++|-
T Consensus 177 ~a~sghtghilalyswn--~~m~~--sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~-- 250 (350)
T KOG0641|consen 177 HALSGHTGHILALYSWN--GAMFA--SGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGH-- 250 (350)
T ss_pred eeecCCcccEEEEEEec--CcEEE--ccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeecc--
Confidence 2222346666653 564 55566 79999999999998443 222 22 35688899999999999987
Q ss_pred CCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceeee-------eecccce
Q 013871 258 NLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFK-------KMFDKLF 328 (434)
Q Consensus 258 ~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~~~~-------~~~~~~~ 328 (434)
.+....+||++.++.+..+.-| .+.++.|||...|++|++. |+.|++-|++|.+-++ ++.+...
T Consensus 251 -~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~sy------d~~ikltdlqgdla~el~~~vv~ehkdk~i 323 (350)
T KOG0641|consen 251 -ADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSY------DMKIKLTDLQGDLAHELPIMVVAEHKDKAI 323 (350)
T ss_pred -CCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecc------cceEEEeecccchhhcCceEEEEeccCceE
Confidence 4458999999999999998766 5667999999999999999 9999999999975443 3667899
Q ss_pred eeEEEcCCCCCCCC
Q 013871 329 QAEWKPVSPDKFGD 342 (434)
Q Consensus 329 ~~~w~p~~~~~~~~ 342 (434)
+..|+|+.-..++.
T Consensus 324 ~~rwh~~d~sfiss 337 (350)
T KOG0641|consen 324 QCRWHPQDFSFISS 337 (350)
T ss_pred EEEecCccceeeec
Confidence 99999997554443
No 101
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.74 E-value=5.3e-16 Score=145.14 Aligned_cols=261 Identities=13% Similarity=0.182 Sum_probs=191.0
Q ss_pred CCCCeeeecCCC-cEEEEecCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCC
Q 013871 50 TTWPSIRFSSDE-AVACRMATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKD 128 (434)
Q Consensus 50 ~~~~~~~~S~d~-~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~ 128 (434)
..+.+++|||.. --+|..+.-.+++|+....+......---..+.++.|-.| +..+|+ ++..|.|+||++.+
T Consensus 27 ~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~D-G~Llaa-----GD~sG~V~vfD~k~- 99 (487)
T KOG0310|consen 27 NSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSD-GRLLAA-----GDESGHVKVFDMKS- 99 (487)
T ss_pred CcceeEecCCCCCCceEEecccEEEEEecchhhhhhhHHhhccceeEEEeecC-CeEEEc-----cCCcCcEEEecccc-
Confidence 667799999954 3455556679999997664321111111245778888877 455553 56778999999655
Q ss_pred CCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeee-cCCCCCeEEEEECcCC
Q 013871 129 LQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVP-LRKEGPVHDVQWSYSG 207 (434)
Q Consensus 129 ~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~-l~~~~~i~~v~wspdg 207 (434)
...+.+...|.+.+....|+|+++.+++.++ .|+..+- +++.+... ... ..++..|.+.+|+|..
T Consensus 100 --r~iLR~~~ah~apv~~~~f~~~d~t~l~s~s--Dd~v~k~---------~d~s~a~v-~~~l~~htDYVR~g~~~~~~ 165 (487)
T KOG0310|consen 100 --RVILRQLYAHQAPVHVTKFSPQDNTMLVSGS--DDKVVKY---------WDLSTAYV-QAELSGHTDYVRCGDISPAN 165 (487)
T ss_pred --HHHHHHHhhccCceeEEEecccCCeEEEecC--CCceEEE---------EEcCCcEE-EEEecCCcceeEeeccccCC
Confidence 5577788888999999999999998876542 3333332 22233322 222 2357899999999988
Q ss_pred CEEEEEEccCCCeEEEEeccc--ceeEEe-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC-EEEEEeeCC--C
Q 013871 208 SEFAVVYGFMPASATIFNKKC--RPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG-KQLGTTRAE--C 281 (434)
Q Consensus 208 ~~~av~~g~~~~~v~l~d~~~--~~~~~~-~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~-~~i~~~~~~--~ 281 (434)
.++++ +|+-|++|++||++. ..+.++ |..++..+.+-|.|..|++|| || .|+|||+-+| +.+.....| .
T Consensus 166 ~hivv-tGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAg-Gn---~vkVWDl~~G~qll~~~~~H~Kt 240 (487)
T KOG0310|consen 166 DHIVV-TGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAG-GN---SVKVWDLTTGGQLLTSMFNHNKT 240 (487)
T ss_pred CeEEE-ecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcC-CC---eEEEEEecCCceehhhhhcccce
Confidence 77776 788899999999974 466777 789999999999999999987 44 7999999855 555555534 7
Q ss_pred ceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecC-ceeeeeec-ccceeeEEEcCCCCCCCC
Q 013871 282 SVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG-SLFFKKMF-DKLFQAEWKPVSPDKFGD 342 (434)
Q Consensus 282 ~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g-~~~~~~~~-~~~~~~~w~p~~~~~~~~ 342 (434)
++++.+..+++.|++++. |+.++||+++. +.++...+ ..+..++-.|++..+.-.
T Consensus 241 VTcL~l~s~~~rLlS~sL------D~~VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~viG 297 (487)
T KOG0310|consen 241 VTCLRLASDSTRLLSGSL------DRHVKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTVVIG 297 (487)
T ss_pred EEEEEeecCCceEeeccc------ccceEEEEccceEEEEeeecccceeeEEecCCCceEEEe
Confidence 778999999999999999 99999999754 45565544 578889999977665544
No 102
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.74 E-value=9.6e-16 Score=153.21 Aligned_cols=267 Identities=13% Similarity=0.165 Sum_probs=190.3
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEE-EeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCC
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQ-LFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTD 79 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~-~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~ 79 (434)
|.++.|. +.++.+.+ .|..|++||..++..+.. +.++. ..+.++++..-+.++++++ |.+++|||..+
T Consensus 211 ~~~~q~~--~~~~~~~s-----~~~tl~~~~~~~~~~i~~~l~GH~---g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~s 280 (537)
T KOG0274|consen 211 VLCLQLH--DGFFKSGS-----DDSTLHLWDLNNGYLILTRLVGHF---GGVWGLAFPSGGDKLVSGSTDKTERVWDCST 280 (537)
T ss_pred hhhheee--cCeEEecC-----CCceeEEeecccceEEEeeccCCC---CCceeEEEecCCCEEEEEecCCcEEeEecCC
Confidence 3455565 55666655 789999999999998877 77654 5555999987677888885 77999999888
Q ss_pred CCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEE
Q 013871 80 FPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAV 159 (434)
Q Consensus 80 ~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~ 159 (434)
.........|...+..+..-+. .+. +++.+.+|++|++++ +..+.....|...+.++..+ +..++..
T Consensus 281 g~C~~~l~gh~stv~~~~~~~~---~~~-----sgs~D~tVkVW~v~n---~~~l~l~~~h~~~V~~v~~~--~~~lvsg 347 (537)
T KOG0274|consen 281 GECTHSLQGHTSSVRCLTIDPF---LLV-----SGSRDNTVKVWDVTN---GACLNLLRGHTGPVNCVQLD--EPLLVSG 347 (537)
T ss_pred CcEEEEecCCCceEEEEEccCc---eEe-----eccCCceEEEEeccC---cceEEEeccccccEEEEEec--CCEEEEE
Confidence 7766666666666776655543 111 256789999999998 88888888899999999887 5554332
Q ss_pred EEecccccCceeecceeEEEEeeCCcceeeeec-CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccc--eeEEe--
Q 013871 160 AQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL-RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR--PILEL-- 234 (434)
Q Consensus 160 ~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l-~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~--~~~~~-- 234 (434)
..|.+.+.|.-.. . .+.-.+ .+.+.|.++.+.+. ..++ +|.+|+.|++||++.. .+..+
T Consensus 348 ---s~d~~v~VW~~~~---------~-~cl~sl~gH~~~V~sl~~~~~-~~~~--Sgs~D~~IkvWdl~~~~~c~~tl~~ 411 (537)
T KOG0274|consen 348 ---SYDGTVKVWDPRT---------G-KCLKSLSGHTGRVYSLIVDSE-NRLL--SGSLDTTIKVWDLRTKRKCIHTLQG 411 (537)
T ss_pred ---ecCceEEEEEhhh---------c-eeeeeecCCcceEEEEEecCc-ceEE--eeeeccceEeecCCchhhhhhhhcC
Confidence 2455665553221 1 222222 24789999988764 4555 7999999999999765 55555
Q ss_pred CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC---CceEEEECCCCCEEEEEEcCCceeeCCcEEE
Q 013871 235 GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE---CSVTSEWSPDGRYFMTATTAPRLQIDNGIKI 311 (434)
Q Consensus 235 ~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~---~~~~~~wspdg~~l~tas~~prl~~D~~i~i 311 (434)
|..-++. ....+++|++++ .+|+|++||.++++++..+.++ .+..+++. -..+++++. |+.+++
T Consensus 412 h~~~v~~--l~~~~~~Lvs~~---aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~------~~~~~l 478 (537)
T KOG0274|consen 412 HTSLVSS--LLLRDNFLVSSS---ADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSD------DGSVKL 478 (537)
T ss_pred Ccccccc--cccccceeEecc---ccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEec------CCeeEE
Confidence 4444433 344678999888 6679999999999999998883 34445554 467888888 999999
Q ss_pred Eee-cCceee
Q 013871 312 FHH-NGSLFF 320 (434)
Q Consensus 312 w~~-~g~~~~ 320 (434)
||+ +|.+..
T Consensus 479 ~dl~~~~~~~ 488 (537)
T KOG0274|consen 479 WDLRSGTLIR 488 (537)
T ss_pred EecccCchhh
Confidence 999 444444
No 103
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.74 E-value=1.8e-15 Score=150.42 Aligned_cols=242 Identities=12% Similarity=0.122 Sum_probs=155.4
Q ss_pred eEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEEC
Q 013871 71 EIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWN 150 (434)
Q Consensus 71 ~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws 150 (434)
+|.+||...... ....-+...+.+..|||+ +..+++...+ +....|.+|++.. +.. .....+......+.|+
T Consensus 185 ~l~i~D~~g~~~-~~lt~~~~~v~~p~wSpD-g~~la~~s~~--~~~~~l~~~dl~~---g~~-~~l~~~~g~~~~~~~S 256 (433)
T PRK04922 185 ALQVADSDGYNP-QTILRSAEPILSPAWSPD-GKKLAYVSFE--RGRSAIYVQDLAT---GQR-ELVASFRGINGAPSFS 256 (433)
T ss_pred EEEEECCCCCCc-eEeecCCCccccccCCCC-CCEEEEEecC--CCCcEEEEEECCC---CCE-EEeccCCCCccCceEC
Confidence 688998765332 222223345788999999 5566554322 2245788999865 332 2333344445578999
Q ss_pred CCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCC--eEEEEeccc
Q 013871 151 RGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPA--SATIFNKKC 228 (434)
Q Consensus 151 ~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~--~v~l~d~~~ 228 (434)
|||+.|++..+.+ |...||.++..+.....+. ...+...+++|+|||+++++.+. ..+ .+.++|+.+
T Consensus 257 pDG~~l~~~~s~~---------g~~~Iy~~d~~~g~~~~lt-~~~~~~~~~~~spDG~~l~f~sd-~~g~~~iy~~dl~~ 325 (433)
T PRK04922 257 PDGRRLALTLSRD---------GNPEIYVMDLGSRQLTRLT-NHFGIDTEPTWAPDGKSIYFTSD-RGGRPQIYRVAASG 325 (433)
T ss_pred CCCCEEEEEEeCC---------CCceEEEEECCCCCeEECc-cCCCCccceEECCCCCEEEEEEC-CCCCceEEEEECCC
Confidence 9999988765332 3346888887665333222 22334567999999999997643 233 577778765
Q ss_pred ceeEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceEEEECCCCCEEEEEEcCCceeeC
Q 013871 229 RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQID 306 (434)
Q Consensus 229 ~~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~~~wspdg~~l~tas~~prl~~D 306 (434)
.....+ +......+.|||||++|+....++....|++||+.+++............+.|+|||++|+.++... -.
T Consensus 326 g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt~~~~~~~p~~spdG~~i~~~s~~~---g~ 402 (433)
T PRK04922 326 GSAERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTLTPGSLDESPSFAPNGSMVLYATREG---GR 402 (433)
T ss_pred CCeEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEECCCCCCCCCceECCCCCEEEEEEecC---Cc
Confidence 444333 3334457899999999988764333347999999887655333333344589999999999888731 12
Q ss_pred CcEEEEeecCceeeeee--cccceeeEEEc
Q 013871 307 NGIKIFHHNGSLFFKKM--FDKLFQAEWKP 334 (434)
Q Consensus 307 ~~i~iw~~~g~~~~~~~--~~~~~~~~w~p 334 (434)
..+.+++.+|....... ...+....|+|
T Consensus 403 ~~L~~~~~~g~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 403 GVLAAVSTDGRVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred eEEEEEECCCCceEEcccCCCCCCCCccCC
Confidence 45778888887655443 34677888887
No 104
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.74 E-value=2.2e-17 Score=149.04 Aligned_cols=269 Identities=14% Similarity=0.231 Sum_probs=174.5
Q ss_pred CCCCCCeeeecCCC-cEEEEe-cCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEc
Q 013871 48 TKTTWPSIRFSSDE-AVACRM-ATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYAC 125 (434)
Q Consensus 48 ~~~~~~~~~~S~d~-~~la~~-~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~ 125 (434)
|.+++.|++=.|.. ..++++ .||+|++||+..........-|..-|..+.+... ..+. .|.+.+|+.|.+
T Consensus 65 HrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~~--~~~t------vgdDKtvK~wk~ 136 (433)
T KOG0268|consen 65 HRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQT--SFFT------VGDDKTVKQWKI 136 (433)
T ss_pred cccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEeccc--ceEE------ecCCcceeeeec
Confidence 55888888888876 667777 5899999999886654555566666888877752 2222 266778999997
Q ss_pred CCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcc-eeeeecCCCCCeEEEEEC
Q 013871 126 GKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH-EGLVPLRKEGPVHDVQWS 204 (434)
Q Consensus 126 ~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~-~~~v~l~~~~~i~~v~ws 204 (434)
.. .++.+.-. +.....+.-+..+.. .+++ |+ .+.+++..... .+.+.. ....|+++.|+
T Consensus 137 ~~----~p~~tilg-~s~~~gIdh~~~~~~---FaTc----------Ge-~i~IWD~~R~~Pv~smsw-G~Dti~svkfN 196 (433)
T KOG0268|consen 137 DG----PPLHTILG-KSVYLGIDHHRKNSV---FATC----------GE-QIDIWDEQRDNPVSSMSW-GADSISSVKFN 196 (433)
T ss_pred cC----Ccceeeec-ccccccccccccccc---cccc----------Cc-eeeecccccCCccceeec-CCCceeEEecC
Confidence 54 12221110 000011110100110 0000 11 12222222211 011111 13568889999
Q ss_pred cCCCEEEEEEccCCCeEEEEeccc-ceeEEe-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC-EEEEEeeCC-
Q 013871 205 YSGSEFAVVYGFMPASATIFNKKC-RPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG-KQLGTTRAE- 280 (434)
Q Consensus 205 pdg~~~av~~g~~~~~v~l~d~~~-~~~~~~-~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~-~~i~~~~~~- 280 (434)
|....++. ++.+|+.|.|||++. .+++.. .+-.-|.|+|+|.+-.+++|. .|..++.+|+... +.+..+.+|
T Consensus 197 pvETsILa-s~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~---ED~nlY~~DmR~l~~p~~v~~dhv 272 (433)
T KOG0268|consen 197 PVETSILA-SCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAAN---EDHNLYTYDMRNLSRPLNVHKDHV 272 (433)
T ss_pred CCcchhee-eeccCCceEEEecccCCccceeeeeccccceecCccccceeecc---ccccceehhhhhhcccchhhcccc
Confidence 97765554 566899999999974 455544 345568999999666666665 5679999999876 456666666
Q ss_pred -CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc----eeeeeecccceeeEEEcCCCCCCCCchhhhhccCcccc
Q 013871 281 -CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS----LFFKKMFDKLFQAEWKPVSPDKFGDISELIKSVGSLKV 355 (434)
Q Consensus 281 -~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~----~~~~~~~~~~~~~~w~p~~~~~~~~~~~~~~~~~~~~~ 355 (434)
.+++++|||.|+.|++|+. |.+|+||.+... ..+...++.+.+|.|+-+..++++.. +-.++++
T Consensus 273 sAV~dVdfsptG~Efvsgsy------DksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGS-----dd~nvRl 341 (433)
T KOG0268|consen 273 SAVMDVDFSPTGQEFVSGSY------DKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGS-----DDGNVRL 341 (433)
T ss_pred eeEEEeccCCCcchhccccc------cceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecC-----CCcceee
Confidence 6777999999999999999 999999999654 34556789999999999999999973 2344566
Q ss_pred cccc
Q 013871 356 AETK 359 (434)
Q Consensus 356 ~~~~ 359 (434)
+..+
T Consensus 342 Wka~ 345 (433)
T KOG0268|consen 342 WKAK 345 (433)
T ss_pred eecc
Confidence 6543
No 105
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.74 E-value=3e-16 Score=152.50 Aligned_cols=242 Identities=12% Similarity=0.147 Sum_probs=175.8
Q ss_pred CCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCC--CCeEEEEecCCCCCCceEEEEEc
Q 013871 49 KTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAP--GSHVAVFVPESKGSPASVQIYAC 125 (434)
Q Consensus 49 ~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~--~~~ia~~~~~~~~~~~~v~i~~~ 125 (434)
..++++++.||||++||++. .|+|+||++.+.+......-|...|.++++|--. ..++| +.+.+.-|.+|++
T Consensus 459 r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLA-----SasrdRlIHV~Dv 533 (1080)
T KOG1408|consen 459 RFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLA-----SASRDRLIHVYDV 533 (1080)
T ss_pred ccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhh-----hccCCceEEEEec
Confidence 35678999999999999995 4799999998866545555666678888887431 12333 4566678999998
Q ss_pred CCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceee----cceeEEEEeeCCcceeeeecCCCCCeEEE
Q 013871 126 GKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYY----GESKLNYLTTDGTHEGLVPLRKEGPVHDV 201 (434)
Q Consensus 126 ~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~----g~~~l~~l~~~~~~~~~v~l~~~~~i~~v 201 (434)
... -..+.++..|...++.++|-..|-..- +.+...|+....-. +...++.- ...++ ....++++
T Consensus 534 ~rn--y~l~qtld~HSssITsvKFa~~gln~~-MiscGADksimFr~~qk~~~g~~f~r-------~t~t~-~ktTlYDm 602 (1080)
T KOG1408|consen 534 KRN--YDLVQTLDGHSSSITSVKFACNGLNRK-MISCGADKSIMFRVNQKASSGRLFPR-------HTQTL-SKTTLYDM 602 (1080)
T ss_pred ccc--cchhhhhcccccceeEEEEeecCCceE-EEeccCchhhheehhccccCceeccc-------ccccc-ccceEEEe
Confidence 652 455667777888889999987773221 22233455432110 00011100 00011 25789999
Q ss_pred EECcCCCEEEEEEccCCCeEEEEecc-cceeEEe-----CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEE
Q 013871 202 QWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL-----GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLG 275 (434)
Q Consensus 202 ~wspdg~~~av~~g~~~~~v~l~d~~-~~~~~~~-----~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~ 275 (434)
+..|+.++++ ++..|.+|+|||+. ++++..| +.+..-.+...|.|.||++.-. +.++.|+|.-+++++.
T Consensus 603 ~Vdp~~k~v~--t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScs---dktl~~~Df~sgEcvA 677 (1080)
T KOG1408|consen 603 AVDPTSKLVV--TVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCS---DKTLCFVDFVSGECVA 677 (1080)
T ss_pred eeCCCcceEE--EEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeec---CCceEEEEeccchhhh
Confidence 9999998888 57789999999996 5666666 4566778899999999999884 4599999999999999
Q ss_pred EeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc
Q 013871 276 TTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS 317 (434)
Q Consensus 276 ~~~~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~ 317 (434)
...+| .++.+.|++|-++|++++. |++|.||.+.-.
T Consensus 678 ~m~GHsE~VTG~kF~nDCkHlISvsg------DgCIFvW~lp~~ 715 (1080)
T KOG1408|consen 678 QMTGHSEAVTGVKFLNDCKHLISVSG------DGCIFVWKLPLT 715 (1080)
T ss_pred hhcCcchheeeeeecccchhheeecC------CceEEEEECchh
Confidence 98887 5556999999999999999 999999998543
No 106
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.73 E-value=1.4e-15 Score=140.42 Aligned_cols=273 Identities=12% Similarity=0.142 Sum_probs=194.5
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF 80 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~ 80 (434)
+.+|...|....++|++ .|+++.++|-.+++.+..|.++. ..+..+.|+++...++.++ +..|+||....-
T Consensus 222 i~ald~~~s~~~ilTGG-----~d~~av~~d~~s~q~l~~~~Gh~---kki~~v~~~~~~~~v~~aSad~~i~vws~~~~ 293 (506)
T KOG0289|consen 222 ITALDIIPSSSKILTGG-----EDKTAVLFDKPSNQILATLKGHT---KKITSVKFHKDLDTVITASADEIIRVWSVPLS 293 (506)
T ss_pred eeEEeecCCCCcceecC-----CCCceEEEecchhhhhhhccCcc---eEEEEEEeccchhheeecCCcceEEeeccccc
Confidence 34566666667888877 89999999999999999988764 5666889999999888875 559999999876
Q ss_pred CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeee--cccceeEEEECCCCCeEEE
Q 013871 81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSF--FRCSTVQLNWNRGSTGLLA 158 (434)
Q Consensus 81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~--~~~~~~~~~ws~~G~~l~~ 158 (434)
........|.+.|+.+..+|.++++++. ..++.....++.+ +..+...+- ...+..+..++|||-.+..
T Consensus 294 s~~~~~~~h~~~V~~ls~h~tgeYllsA------s~d~~w~Fsd~~~---g~~lt~vs~~~s~v~~ts~~fHpDgLifgt 364 (506)
T KOG0289|consen 294 SEPTSSRPHEEPVTGLSLHPTGEYLLSA------SNDGTWAFSDISS---GSQLTVVSDETSDVEYTSAAFHPDGLIFGT 364 (506)
T ss_pred cCccccccccccceeeeeccCCcEEEEe------cCCceEEEEEccC---CcEEEEEeeccccceeEEeeEcCCceEEec
Confidence 6555566777889999999997665542 3455667777776 555554443 2345678899999964322
Q ss_pred EEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccce-eEEe---
Q 013871 159 VAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP-ILEL--- 234 (434)
Q Consensus 159 ~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~-~~~~--- 234 (434)
...|... .+|.+.... ....++- +.++|..++|+-+|-++++ +..|+.|.+||++... ..++
T Consensus 365 ---gt~d~~v-------kiwdlks~~-~~a~Fpg-ht~~vk~i~FsENGY~Lat--~add~~V~lwDLRKl~n~kt~~l~ 430 (506)
T KOG0289|consen 365 ---GTPDGVV-------KIWDLKSQT-NVAKFPG-HTGPVKAISFSENGYWLAT--AADDGSVKLWDLRKLKNFKTIQLD 430 (506)
T ss_pred ---cCCCceE-------EEEEcCCcc-ccccCCC-CCCceeEEEeccCceEEEE--EecCCeEEEEEehhhcccceeecc
Confidence 1133333 344442222 1223333 5899999999999988885 6678889999997432 2233
Q ss_pred CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEcc--CCEEEEEeeCCC--ceEEEECCCCCEEEEEEcCCceeeCCcEE
Q 013871 235 GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV--DGKQLGTTRAEC--SVTSEWSPDGRYFMTATTAPRLQIDNGIK 310 (434)
Q Consensus 235 ~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~--~~~~i~~~~~~~--~~~~~wspdg~~l~tas~~prl~~D~~i~ 310 (434)
....++++.|.+.|.+|+++| .+=+|++++-. +..++..+..|. .+.+.|.-+-+++++++. |..++
T Consensus 431 ~~~~v~s~~fD~SGt~L~~~g---~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~sm------d~~l~ 501 (506)
T KOG0289|consen 431 EKKEVNSLSFDQSGTYLGIAG---SDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSM------DAILR 501 (506)
T ss_pred ccccceeEEEcCCCCeEEeec---ceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccc------hhheE
Confidence 345799999999999999996 32355555533 456777666653 344899999999999998 88888
Q ss_pred EEee
Q 013871 311 IFHH 314 (434)
Q Consensus 311 iw~~ 314 (434)
|+.+
T Consensus 502 ~~a~ 505 (506)
T KOG0289|consen 502 LYAL 505 (506)
T ss_pred Eeec
Confidence 8754
No 107
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.73 E-value=2e-16 Score=148.17 Aligned_cols=274 Identities=14% Similarity=0.155 Sum_probs=202.7
Q ss_pred CcceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCC---cEEEEEeecCcCCCCCCeeeecCCCcEEEEecC-CeEEEEe
Q 013871 1 MLLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETG---EAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT-NEIQFFD 76 (434)
Q Consensus 1 ~V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g---~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~-~~i~v~~ 76 (434)
+|.++..|-..+++.|++ .+-|+|||+..- ..+..+...+ -..-++++...|||+-|+.++. .+|-|||
T Consensus 421 vVcAvtIS~~trhVyTgG------kgcVKVWdis~pg~k~PvsqLdcl~-rdnyiRSckL~pdgrtLivGGeastlsiWD 493 (705)
T KOG0639|consen 421 VVCAVTISNPTRHVYTGG------KGCVKVWDISQPGNKSPVSQLDCLN-RDNYIRSCKLLPDGRTLIVGGEASTLSIWD 493 (705)
T ss_pred EEEEEEecCCcceeEecC------CCeEEEeeccCCCCCCccccccccC-cccceeeeEecCCCceEEeccccceeeeee
Confidence 367788898899998877 467999998532 2233332221 1144567789999998888754 6999999
Q ss_pred CCCCCCceeeeeec--CCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCC
Q 013871 77 TTDFPKGILYRLRV--PGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGST 154 (434)
Q Consensus 77 ~~~~~~~~~~~~~~--~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~ 154 (434)
+..........+.. .....+++|||.+--+++ ..++.|.|||+.+ ...+++...|.....++..++||+
T Consensus 494 LAapTprikaeltssapaCyALa~spDakvcFsc------csdGnI~vwDLhn---q~~VrqfqGhtDGascIdis~dGt 564 (705)
T KOG0639|consen 494 LAAPTPRIKAELTSSAPACYALAISPDAKVCFSC------CSDGNIAVWDLHN---QTLVRQFQGHTDGASCIDISKDGT 564 (705)
T ss_pred ccCCCcchhhhcCCcchhhhhhhcCCccceeeee------ccCCcEEEEEccc---ceeeecccCCCCCceeEEecCCCc
Confidence 98755433333443 345667788874433343 3457899999988 788999999999999999999999
Q ss_pred eEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeEEe
Q 013871 155 GLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL 234 (434)
Q Consensus 155 ~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~~ 234 (434)
. +++...|.+.+.|+-... ......+-...|.++..+|++.+++| |-..+.+.+........+.+
T Consensus 565 k---lWTGGlDntvRcWDlreg----------rqlqqhdF~SQIfSLg~cP~~dWlav--GMens~vevlh~skp~kyql 629 (705)
T KOG0639|consen 565 K---LWTGGLDNTVRCWDLREG----------RQLQQHDFSSQIFSLGYCPTGDWLAV--GMENSNVEVLHTSKPEKYQL 629 (705)
T ss_pred e---eecCCCccceeehhhhhh----------hhhhhhhhhhhheecccCCCccceee--ecccCcEEEEecCCccceee
Confidence 8 466668888887642211 11111112568899999999999996 77777899988876666655
Q ss_pred --CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC-CCceEEEECCCCCEEEEEEcCCceeeCCcEEE
Q 013871 235 --GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA-ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKI 311 (434)
Q Consensus 235 --~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~-~~~~~~~wspdg~~l~tas~~prl~~D~~i~i 311 (434)
|..-|.++.|++.|+++++.|.|| -+..|-+--|..|..... ..+++|..|-|.+||+|++. |....|
T Consensus 630 hlheScVLSlKFa~cGkwfvStGkDn---lLnawrtPyGasiFqskE~SsVlsCDIS~ddkyIVTGSG------dkkATV 700 (705)
T KOG0639|consen 630 HLHESCVLSLKFAYCGKWFVSTGKDN---LLNAWRTPYGASIFQSKESSSVLSCDISFDDKYIVTGSG------DKKATV 700 (705)
T ss_pred cccccEEEEEEecccCceeeecCchh---hhhhccCccccceeeccccCcceeeeeccCceEEEecCC------CcceEE
Confidence 677789999999999999999666 788998887876665554 47778999999999999998 877777
Q ss_pred Eee
Q 013871 312 FHH 314 (434)
Q Consensus 312 w~~ 314 (434)
|.+
T Consensus 701 YeV 703 (705)
T KOG0639|consen 701 YEV 703 (705)
T ss_pred EEE
Confidence 654
No 108
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.73 E-value=3.3e-16 Score=151.14 Aligned_cols=268 Identities=13% Similarity=0.179 Sum_probs=184.9
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF 80 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~ 80 (434)
|..++|-|||+.|+... +..+.|||+.+|..+.++.++. +.+.+++||.||+.+|+++ |..|.+|+..-.
T Consensus 15 i~d~afkPDGsqL~lAA------g~rlliyD~ndG~llqtLKgHK---DtVycVAys~dGkrFASG~aDK~VI~W~~klE 85 (1081)
T KOG1538|consen 15 INDIAFKPDGTQLILAA------GSRLLVYDTSDGTLLQPLKGHK---DTVYCVAYAKDGKRFASGSADKSVIIWTSKLE 85 (1081)
T ss_pred hheeEECCCCceEEEec------CCEEEEEeCCCccccccccccc---ceEEEEEEccCCceeccCCCceeEEEeccccc
Confidence 56799999999998765 5789999999999999987754 7777999999999999995 568999986542
Q ss_pred CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEE
Q 013871 81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVA 160 (434)
Q Consensus 81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~ 160 (434)
+.....|.+.|.++.|.|.. ..++.. .-+..-+|+... ...+..+ ....+++.+|+.||+++++..
T Consensus 86 --G~LkYSH~D~IQCMsFNP~~-h~LasC------sLsdFglWS~~q---K~V~K~k--ss~R~~~CsWtnDGqylalG~ 151 (1081)
T KOG1538|consen 86 --GILKYSHNDAIQCMSFNPIT-HQLASC------SLSDFGLWSPEQ---KSVSKHK--SSSRIICCSWTNDGQYLALGM 151 (1081)
T ss_pred --ceeeeccCCeeeEeecCchH-HHhhhc------chhhccccChhh---hhHHhhh--hheeEEEeeecCCCcEEEEec
Confidence 24456677889999999973 333321 112345666543 2222221 234567889999999987642
Q ss_pred EecccccCceeecceeEEEEeeCCcceeeeec--CCCCCeEEEEECcCCC-----EEEEEEccCCCeEEEEecccceeEE
Q 013871 161 QSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL--RKEGPVHDVQWSYSGS-----EFAVVYGFMPASATIFNKKCRPILE 233 (434)
Q Consensus 161 ~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l--~~~~~i~~v~wspdg~-----~~av~~g~~~~~v~l~d~~~~~~~~ 233 (434)
.+.+ +-.-+..+....++.- ..+.+|.+++|+|... .++|+ +...++.+|.+.+..+-.
T Consensus 152 ---~nGT---------IsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~--DW~qTLSFy~LsG~~Igk 217 (1081)
T KOG1538|consen 152 ---FNGT---------ISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVA--DWGQTLSFYQLSGKQIGK 217 (1081)
T ss_pred ---cCce---------EEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEE--eccceeEEEEecceeecc
Confidence 1111 1111222222222221 1267999999999643 44543 344577788777766542
Q ss_pred e--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC--CCceEEEECCCCCEEEEEEcCCceeeCCcE
Q 013871 234 L--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA--ECSVTSEWSPDGRYFMTATTAPRLQIDNGI 309 (434)
Q Consensus 234 ~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~--~~~~~~~wspdg~~l~tas~~prl~~D~~i 309 (434)
- -.-.-.||.|-|+|.|+++|| .++.+.+|-. .|-.+.+... +.+++++-.|+|++++.|.. ||+|
T Consensus 218 ~r~L~FdP~CisYf~NGEy~LiGG---sdk~L~~fTR-~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCq------DGTi 287 (1081)
T KOG1538|consen 218 DRALNFDPCCISYFTNGEYILLGG---SDKQLSLFTR-DGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQ------DGTI 287 (1081)
T ss_pred cccCCCCchhheeccCCcEEEEcc---CCCceEEEee-cCeEEeeccccceeEEEEEEccCCceEEEEEc------cCee
Confidence 1 122336899999999999999 5568999854 5666666543 47778999999999999999 9999
Q ss_pred EEEeecC
Q 013871 310 KIFHHNG 316 (434)
Q Consensus 310 ~iw~~~g 316 (434)
-.|++--
T Consensus 288 ACyNl~f 294 (1081)
T KOG1538|consen 288 ACYNLIF 294 (1081)
T ss_pred ehhhhHH
Confidence 9998743
No 109
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=4.5e-16 Score=138.43 Aligned_cols=228 Identities=15% Similarity=0.256 Sum_probs=145.9
Q ss_pred cEEEEEcCCCcEEEEEee--cCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceee----eeecCCeeEEEEe
Q 013871 27 NVILWKTETGEAVYQLFQ--KNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILY----RLRVPGVAAFEVS 99 (434)
Q Consensus 27 ~v~iWd~~~g~~~~~~~~--~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~----~~~~~~v~~~~~s 99 (434)
...-|+......++.+.. ...|...+++++||.||++||++. |+.|++|++.+|...... .+..+.-+.+.|+
T Consensus 62 r~~~~k~~q~~f~Hpl~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~Fa 141 (420)
T KOG2096|consen 62 RNDQWKAKQPTFVHPLNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFA 141 (420)
T ss_pred chhhhcccCCCcccchhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEEC
Confidence 345565544433332211 122568889999999999999985 679999999987643221 2233456678888
Q ss_pred CCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEE
Q 013871 100 KAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNY 179 (434)
Q Consensus 100 p~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~ 179 (434)
|| ...+.++... ...+++|.+... .||..- ++.
T Consensus 142 pD-c~s~vv~~~~----g~~l~vyk~~K~----------------------~dG~~~--------------------~~~ 174 (420)
T KOG2096|consen 142 PD-CKSVVVSVKR----GNKLCVYKLVKK----------------------TDGSGS--------------------HHF 174 (420)
T ss_pred CC-cceEEEEEcc----CCEEEEEEeeec----------------------ccCCCC--------------------ccc
Confidence 88 4444444331 135555555331 112210 111
Q ss_pred EeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeEEeCCcC--eeEEEECCCCCeEEEEecC
Q 013871 180 LTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSGP--YNTVRWNPKGKFLCLAGFG 257 (434)
Q Consensus 180 l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~~~~~~--~~~i~~SP~g~~l~~~~~~ 257 (434)
+..+.. .++-.+.-+|.++-...++++++ +...+.+|.|||++++.+..+.+.. -...+.||+|++|+++||.
T Consensus 175 v~~D~~---~f~~kh~v~~i~iGiA~~~k~im--sas~dt~i~lw~lkGq~L~~idtnq~~n~~aavSP~GRFia~~gFT 249 (420)
T KOG2096|consen 175 VHIDNL---EFERKHQVDIINIGIAGNAKYIM--SASLDTKICLWDLKGQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFT 249 (420)
T ss_pred cccccc---ccchhcccceEEEeecCCceEEE--EecCCCcEEEEecCCceeeeeccccccccceeeCCCCcEEEEecCC
Confidence 111100 00011134555666666666666 6777889999999988887775333 3457899999999999977
Q ss_pred CCCCeEEEEEcc---CC-----EEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec
Q 013871 258 NLPGDMAFWDYV---DG-----KQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN 315 (434)
Q Consensus 258 ~~~g~i~iwd~~---~~-----~~i~~~~~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~ 315 (434)
- +|.+|..- +| +.+..+.+| .+..++|||+.+.++|++. ||++||||.+
T Consensus 250 p---DVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSk------DG~wriwdtd 308 (420)
T KOG2096|consen 250 P---DVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSK------DGKWRIWDTD 308 (420)
T ss_pred C---CceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEec------CCcEEEeecc
Confidence 5 89999853 33 234456666 5666999999999999999 9999999974
No 110
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.73 E-value=2.2e-15 Score=149.64 Aligned_cols=236 Identities=14% Similarity=0.160 Sum_probs=153.2
Q ss_pred CeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEE
Q 013871 70 NEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNW 149 (434)
Q Consensus 70 ~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~w 149 (434)
.+|.+||...... .....+...+.++.|||+ +..+++...+ +....|.+|++.+ +... ....+......+.|
T Consensus 184 ~~i~i~d~dg~~~-~~lt~~~~~v~~p~wSPD-G~~la~~s~~--~~~~~i~i~dl~t---g~~~-~l~~~~g~~~~~~w 255 (429)
T PRK01742 184 YEVRVADYDGFNQ-FIVNRSSQPLMSPAWSPD-GSKLAYVSFE--NKKSQLVVHDLRS---GARK-VVASFRGHNGAPAF 255 (429)
T ss_pred EEEEEECCCCCCc-eEeccCCCccccceEcCC-CCEEEEEEec--CCCcEEEEEeCCC---CceE-EEecCCCccCceeE
Confidence 4899999866442 222233345889999999 5556543322 2245789999865 3322 22223334457899
Q ss_pred CCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEec--c
Q 013871 150 NRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNK--K 227 (434)
Q Consensus 150 s~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~--~ 227 (434)
+|||+.|++..+.+ |...||.++..+.....++ ...+.+.+++|+|||+.+++.+ ..++...||++ .
T Consensus 256 SPDG~~La~~~~~~---------g~~~Iy~~d~~~~~~~~lt-~~~~~~~~~~wSpDG~~i~f~s-~~~g~~~I~~~~~~ 324 (429)
T PRK01742 256 SPDGSRLAFASSKD---------GVLNIYVMGANGGTPSQLT-SGAGNNTEPSWSPDGQSILFTS-DRSGSPQVYRMSAS 324 (429)
T ss_pred CCCCCEEEEEEecC---------CcEEEEEEECCCCCeEeec-cCCCCcCCEEECCCCCEEEEEE-CCCCCceEEEEECC
Confidence 99999988754221 3345888887665433332 2345678899999999988753 34555666654 3
Q ss_pred cceeEEeCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceEEEECCCCCEEEEEEcCCceeeCC
Q 013871 228 CRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDN 307 (434)
Q Consensus 228 ~~~~~~~~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~~~wspdg~~l~tas~~prl~~D~ 307 (434)
+.....+.... ..+.|||||++|++++.+ .+.+||+.+++............+.|+|||++|++++. ++
T Consensus 325 ~~~~~~l~~~~-~~~~~SpDG~~ia~~~~~----~i~~~Dl~~g~~~~lt~~~~~~~~~~sPdG~~i~~~s~------~g 393 (429)
T PRK01742 325 GGGASLVGGRG-YSAQISADGKTLVMINGD----NVVKQDLTSGSTEVLSSTFLDESPSISPNGIMIIYSST------QG 393 (429)
T ss_pred CCCeEEecCCC-CCccCCCCCCEEEEEcCC----CEEEEECCCCCeEEecCCCCCCCceECCCCCEEEEEEc------CC
Confidence 33333332222 457899999999887642 47779998886443333333345889999999999998 88
Q ss_pred cEEEEee---cCceeeeee--cccceeeEEEcC
Q 013871 308 GIKIFHH---NGSLFFKKM--FDKLFQAEWKPV 335 (434)
Q Consensus 308 ~i~iw~~---~g~~~~~~~--~~~~~~~~w~p~ 335 (434)
++.+|.+ +|+...... ...+...+|+|.
T Consensus 394 ~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 394 LGKVLQLVSADGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred CceEEEEEECCCCceEEccCCCCCCCCcccCCC
Confidence 8777764 687766553 346888999986
No 111
>PTZ00420 coronin; Provisional
Probab=99.73 E-value=4.9e-15 Score=148.71 Aligned_cols=195 Identities=12% Similarity=0.156 Sum_probs=135.9
Q ss_pred EEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCC-CCeEEEEEEecccccCceeecceeEEEEeeCCc-
Q 013871 108 VFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRG-STGLLAVAQSDVDKTNQSYYGESKLNYLTTDGT- 185 (434)
Q Consensus 108 ~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~-G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~- 185 (434)
.|....++..+.+++|+... ..++.....|...+..+.|+|+ +..| +. ...|.+.+.| .+...+.
T Consensus 44 ~w~~~gGG~~gvI~L~~~~r---~~~v~~L~gH~~~V~~lafsP~~~~lL-AS--gS~DgtIrIW-------Di~t~~~~ 110 (568)
T PTZ00420 44 PWEVEGGGLIGAIRLENQMR---KPPVIKLKGHTSSILDLQFNPCFSEIL-AS--GSEDLTIRVW-------EIPHNDES 110 (568)
T ss_pred EEEcCCCCceeEEEeeecCC---CceEEEEcCCCCCEEEEEEcCCCCCEE-EE--EeCCCeEEEE-------ECCCCCcc
Confidence 34445567788999999876 5677778889999999999997 4543 32 2345555433 3321110
Q ss_pred ----ceeeee-cCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccc-eeEEe-CCcCeeEEEECCCCCeEEEEecCC
Q 013871 186 ----HEGLVP-LRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PILEL-GSGPYNTVRWNPKGKFLCLAGFGN 258 (434)
Q Consensus 186 ----~~~~v~-l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~-~~~~~-~~~~~~~i~~SP~g~~l~~~~~~~ 258 (434)
...... ..+...|.+++|+|++..+++ +++.|+.|+|||++.. .+..+ +...+.++.|+|+|++|++++
T Consensus 111 ~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLa-SgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s--- 186 (568)
T PTZ00420 111 VKEIKDPQCILKGHKKKISIIDWNPMNYYIMC-SSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTC--- 186 (568)
T ss_pred ccccccceEEeecCCCcEEEEEECCCCCeEEE-EEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEe---
Confidence 011111 235678999999999887654 5667899999999743 34444 567899999999999999887
Q ss_pred CCCeEEEEEccCCEEEEEeeCCCc---eE----EEECCCCCEEEEEEcCCceeeCCcEEEEeec--Cceeee
Q 013871 259 LPGDMAFWDYVDGKQLGTTRAECS---VT----SEWSPDGRYFMTATTAPRLQIDNGIKIFHHN--GSLFFK 321 (434)
Q Consensus 259 ~~g~i~iwd~~~~~~i~~~~~~~~---~~----~~wspdg~~l~tas~~prl~~D~~i~iw~~~--g~~~~~ 321 (434)
.++.|+|||+++++.+..+.+|.- .. ..|++|+.+|++++.+.. .++.|+|||+. +..+..
T Consensus 187 ~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~--~~R~VkLWDlr~~~~pl~~ 256 (568)
T PTZ00420 187 VGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKN--NMREMKLWDLKNTTSALVT 256 (568)
T ss_pred cCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCC--CccEEEEEECCCCCCceEE
Confidence 456999999999998888877631 11 345799999999887210 02479999986 344443
No 112
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.72 E-value=3.9e-14 Score=133.11 Aligned_cols=296 Identities=13% Similarity=0.147 Sum_probs=196.9
Q ss_pred cceEEecCCC-cEEEEEecCCCCCCCcEEEEEcCCCcEEEE---EeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeC
Q 013871 2 LLLLTCLRVG-LIIQTFQKSSTPQEKNVILWKTETGEAVYQ---LFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDT 77 (434)
Q Consensus 2 V~~l~fSP~g-~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~---~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~ 77 (434)
|....|.|.+ +.++|++ .+.+..|+.+.+....+ |... ++.-+.|++|.++|..+-.-+++.|.||+.
T Consensus 203 v~~a~FHPtd~nliit~G------k~H~~Fw~~~~~~l~k~~~~fek~--ekk~Vl~v~F~engdviTgDS~G~i~Iw~~ 274 (626)
T KOG2106|consen 203 VFLATFHPTDPNLIITCG------KGHLYFWTLRGGSLVKRQGIFEKR--EKKFVLCVTFLENGDVITGDSGGNILIWSK 274 (626)
T ss_pred EEEEEeccCCCcEEEEeC------CceEEEEEccCCceEEEeeccccc--cceEEEEEEEcCCCCEEeecCCceEEEEeC
Confidence 5677899966 5555665 57899999988866443 3322 346678999999999887668899999998
Q ss_pred CCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEE
Q 013871 78 TDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLL 157 (434)
Q Consensus 78 ~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~ 157 (434)
...........|..+|.++.+--+ +.++ +++.+..|.+|+ .+....+++..-. ....+..+.=+. +. |+
T Consensus 275 ~~~~~~k~~~aH~ggv~~L~~lr~-Gtll------SGgKDRki~~Wd-~~y~k~r~~elPe-~~G~iRtv~e~~-~d-i~ 343 (626)
T KOG2106|consen 275 GTNRISKQVHAHDGGVFSLCMLRD-GTLL------SGGKDRKIILWD-DNYRKLRETELPE-QFGPIRTVAEGK-GD-IL 343 (626)
T ss_pred CCceEEeEeeecCCceEEEEEecC-ccEe------ecCccceEEecc-ccccccccccCch-hcCCeeEEecCC-Cc-EE
Confidence 653322223355667887776665 2333 267888999999 3322122221111 112222332222 12 44
Q ss_pred EEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeEE-eCC
Q 013871 158 AVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILE-LGS 236 (434)
Q Consensus 158 ~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~-~~~ 236 (434)
+.++.. .|..=.+.+.+. .+.+.+......++-+|+..+|+ ++..|+.+.||+ +.+.+.+ .-.
T Consensus 344 vGTtrN------------~iL~Gt~~~~f~-~~v~gh~delwgla~hps~~q~~--T~gqdk~v~lW~-~~k~~wt~~~~ 407 (626)
T KOG2106|consen 344 VGTTRN------------FILQGTLENGFT-LTVQGHGDELWGLATHPSKNQLL--TCGQDKHVRLWN-DHKLEWTKIIE 407 (626)
T ss_pred Eeeccc------------eEEEeeecCCce-EEEEecccceeeEEcCCChhhee--eccCcceEEEcc-CCceeEEEEec
Confidence 433221 111112223322 22233455788999999999998 678899999999 4444443 357
Q ss_pred cCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC-CceEEEECCCCCEEEEEEcCCceeeCCcEEEEee-
Q 013871 237 GPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH- 314 (434)
Q Consensus 237 ~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~- 314 (434)
.+..++.|+|.| .+++|. ..|...+.|.++...+...... ..+.+.++|||.+||.|+. ||.|.||.+
T Consensus 408 d~~~~~~fhpsg-~va~Gt---~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~------d~~iyiy~Vs 477 (626)
T KOG2106|consen 408 DPAECADFHPSG-VVAVGT---ATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSH------DNHIYIYRVS 477 (626)
T ss_pred CceeEeeccCcc-eEEEee---ccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecC------CCeEEEEEEC
Confidence 788999999999 888777 6689999999997666554443 5566999999999999999 999999998
Q ss_pred -cCceeeee---ecccceeeEEEcCCCCCCCC
Q 013871 315 -NGSLFFKK---MFDKLFQAEWKPVSPDKFGD 342 (434)
Q Consensus 315 -~g~~~~~~---~~~~~~~~~w~p~~~~~~~~ 342 (434)
+|..+... +-..+-.+.|+++..++.+.
T Consensus 478 ~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~ 509 (626)
T KOG2106|consen 478 ANGRKYSRVGKCSGSPITHLDWSSDSQFLVSN 509 (626)
T ss_pred CCCcEEEEeeeecCceeEEeeecCCCceEEec
Confidence 45544332 22568899999999887765
No 113
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.72 E-value=5.9e-15 Score=146.96 Aligned_cols=247 Identities=12% Similarity=0.123 Sum_probs=158.1
Q ss_pred eEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEEC
Q 013871 71 EIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWN 150 (434)
Q Consensus 71 ~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws 150 (434)
+|.++|...... .....+...+....|||+ +..|++..... ....|.+|++.. +. ...++.+........|+
T Consensus 183 ~l~~~d~dg~~~-~~lt~~~~~v~~p~wSpD-G~~lay~s~~~--g~~~i~~~dl~~---g~-~~~l~~~~g~~~~~~~S 254 (435)
T PRK05137 183 RLAIMDQDGANV-RYLTDGSSLVLTPRFSPN-RQEITYMSYAN--GRPRVYLLDLET---GQ-RELVGNFPGMTFAPRFS 254 (435)
T ss_pred EEEEECCCCCCc-EEEecCCCCeEeeEECCC-CCEEEEEEecC--CCCEEEEEECCC---Cc-EEEeecCCCcccCcEEC
Confidence 788888755332 223334456889999999 55666554332 236899999976 33 23444455566688999
Q ss_pred CCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccC-CCeEEEEecccc
Q 013871 151 RGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFM-PASATIFNKKCR 229 (434)
Q Consensus 151 ~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~-~~~v~l~d~~~~ 229 (434)
|||+.|++..+.+ +...||.++..+.....++ ...+.....+|+|||+++++.+... ...|+++|+.+.
T Consensus 255 PDG~~la~~~~~~---------g~~~Iy~~d~~~~~~~~Lt-~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~ 324 (435)
T PRK05137 255 PDGRKVVMSLSQG---------GNTDIYTMDLRSGTTTRLT-DSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGS 324 (435)
T ss_pred CCCCEEEEEEecC---------CCceEEEEECCCCceEEcc-CCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCC
Confidence 9999987764321 3346888887765433332 2244566799999999999765321 237888898766
Q ss_pred eeEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceEEEECCCCCEEEEEEcCCceeeCC
Q 013871 230 PILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDN 307 (434)
Q Consensus 230 ~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~~~wspdg~~l~tas~~prl~~D~ 307 (434)
....+ +.+......|||||++|+....+.....|.+||+.++.............+.|||||++|+.++....-.-..
T Consensus 325 ~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt~~~~~~~p~~spDG~~i~~~~~~~~~~~~~ 404 (435)
T PRK05137 325 NPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERILTSGFLVEGPTWAPNGRVIMFFRQTPGSGGAP 404 (435)
T ss_pred CeEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEeccCCCCCCCCeECCCCCEEEEEEccCCCCCcc
Confidence 55544 3455677899999999998775433357899998665432222333445589999999999877621100002
Q ss_pred cEEEEeecCceeeeeec-ccceeeEEEcC
Q 013871 308 GIKIFHHNGSLFFKKMF-DKLFQAEWKPV 335 (434)
Q Consensus 308 ~i~iw~~~g~~~~~~~~-~~~~~~~w~p~ 335 (434)
.+.+.+++|........ ..+...+|.|.
T Consensus 405 ~L~~~dl~g~~~~~l~~~~~~~~p~Wsp~ 433 (435)
T PRK05137 405 KLYTVDLTGRNEREVPTPGDASDPAWSPL 433 (435)
T ss_pred eEEEEECCCCceEEccCCCCccCcccCCC
Confidence 56777777765443322 24566777764
No 114
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.72 E-value=2.2e-15 Score=139.01 Aligned_cols=225 Identities=13% Similarity=0.183 Sum_probs=162.7
Q ss_pred CCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCC
Q 013871 50 TTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKD 128 (434)
Q Consensus 50 ~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~ 128 (434)
.++..+.-.+....+++++ |.++.+||.+........+.|...|..+.++|+... +. ....+..|+||..+.
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~-v~-----~aSad~~i~vws~~~- 292 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDT-VI-----TASADEIIRVWSVPL- 292 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhh-ee-----ecCCcceEEeecccc-
Confidence 3444556666656667775 459999999887666667777778999999998432 22 234556899999998
Q ss_pred CCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecC-CCCCeEEEEECcCC
Q 013871 129 LQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR-KEGPVHDVQWSYSG 207 (434)
Q Consensus 129 ~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~-~~~~i~~v~wspdg 207 (434)
.+.......|...+..+.-+|.|.|++.. +.|++...+ .+.. +..-..+.-+ .+-.+++.+|+|||
T Consensus 293 --~s~~~~~~~h~~~V~~ls~h~tgeYllsA---s~d~~w~Fs-------d~~~-g~~lt~vs~~~s~v~~ts~~fHpDg 359 (506)
T KOG0289|consen 293 --SSEPTSSRPHEEPVTGLSLHPTGEYLLSA---SNDGTWAFS-------DISS-GSQLTVVSDETSDVEYTSAAFHPDG 359 (506)
T ss_pred --ccCccccccccccceeeeeccCCcEEEEe---cCCceEEEE-------EccC-CcEEEEEeeccccceeEEeeEcCCc
Confidence 55556666788888899999999997542 233332221 1111 1111111111 13458899999999
Q ss_pred CEEEEEEccCCCeEEEEecccc-eeEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC---C
Q 013871 208 SEFAVVYGFMPASATIFNKKCR-PILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE---C 281 (434)
Q Consensus 208 ~~~av~~g~~~~~v~l~d~~~~-~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~---~ 281 (434)
-.|+ +|.+|+.++|||++.. .+..| |.++|.+|.|+-+|-||+++. .||.|.+||++..+...++.-. .
T Consensus 360 Lifg--tgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~a---dd~~V~lwDLRKl~n~kt~~l~~~~~ 434 (506)
T KOG0289|consen 360 LIFG--TGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAA---DDGSVKLWDLRKLKNFKTIQLDEKKE 434 (506)
T ss_pred eEEe--ccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEe---cCCeEEEEEehhhcccceeecccccc
Confidence 8877 7999999999999743 34455 899999999999999999998 5678999999987766666554 4
Q ss_pred ceEEEECCCCCEEEEEEc
Q 013871 282 SVTSEWSPDGRYFMTATT 299 (434)
Q Consensus 282 ~~~~~wspdg~~l~tas~ 299 (434)
+..+.|.+.|.+|+.++.
T Consensus 435 v~s~~fD~SGt~L~~~g~ 452 (506)
T KOG0289|consen 435 VNSLSFDQSGTYLGIAGS 452 (506)
T ss_pred ceeEEEcCCCCeEEeecc
Confidence 778999999999999976
No 115
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.71 E-value=4.3e-15 Score=141.45 Aligned_cols=303 Identities=16% Similarity=0.232 Sum_probs=172.5
Q ss_pred CcEEEEEcCCCc-EEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCC
Q 013871 26 KNVILWKTETGE-AVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGS 104 (434)
Q Consensus 26 ~~v~iWd~~~g~-~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 104 (434)
..+.+|+...-. ....|.... ........++|++|+++|...+..+.|++..... .........+.++.+||. +.
T Consensus 11 e~~~l~~~~~~~~~~~~f~~~~-~~~~~~v~~~S~~G~lfA~~~~~~v~i~~~~~~~--~~lt~~~~~~~~L~fSP~-g~ 86 (566)
T KOG2315|consen 11 EGFYLFNGPGSKDAVTVFEQNK-TSRPCNVFAYSNNGRLFAYSDNQVVKVFEIATLK--VVLCVELKKTYDLLFSPK-GN 86 (566)
T ss_pred ceeEEeccCCccccccccccCC-CCCcceeEEEcCCCcEEEEEcCCeEEEEEccCCc--EEEEeccceeeeeeeccc-cc
Confidence 457788765422 223333321 1122346789999999999999999999988754 333444448899999999 66
Q ss_pred eEEEEecCCCCCC-----ceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecc-------cccCceee
Q 013871 105 HVAVFVPESKGSP-----ASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDV-------DKTNQSYY 172 (434)
Q Consensus 105 ~ia~~~~~~~~~~-----~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~-------d~~~~~~~ 172 (434)
++..|-+-....+ -.+.+|++.+ +........-....-...|++|....+.+++.++ +++...-.
T Consensus 87 yL~T~e~~~i~~~~~~~~pn~~v~~vet---~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl 163 (566)
T KOG2315|consen 87 YLLTWEPWAIYGPKNASNPNVLVYNVET---GVQRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKL 163 (566)
T ss_pred ccccccccccccCCCCCCCceeeeeecc---ceehhheehhhhcCcccccccchhhhhhhhcceEEEEecCCccceeeee
Confidence 6766644322222 3567898866 2222221111111136677777665444332221 00000000
Q ss_pred ccee--EEEE--------------eeCCcceeeeecCC--C--------------CCeEEEEECcCCCEEEEEEc-cCC-
Q 013871 173 GESK--LNYL--------------TTDGTHEGLVPLRK--E--------------GPVHDVQWSYSGSEFAVVYG-FMP- 218 (434)
Q Consensus 173 g~~~--l~~l--------------~~~~~~~~~v~l~~--~--------------~~i~~v~wspdg~~~av~~g-~~~- 218 (434)
.... .+.+ +..|. ...+.+-+ . ..--.+.|.+-|.-+.+++. +-|
T Consensus 164 ~~~~i~~f~lSpgp~~~~vAvyvPe~kGa-Pa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDk 242 (566)
T KOG2315|consen 164 SVSGITMLSLSPGPEPPFVAVYVPEKKGA-PASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDK 242 (566)
T ss_pred eccceeeEEecCCCCCceEEEEccCCCCC-CcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecC
Confidence 0000 0011 11111 00110000 0 00013556665554444322 222
Q ss_pred --------CeEEEEecccce-eEEe-CCcCeeEEEECCCCCeEEE-EecCCCCCeEEEEEccCCEEEEEeeCCCceEEEE
Q 013871 219 --------ASATIFNKKCRP-ILEL-GSGPYNTVRWNPKGKFLCL-AGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEW 287 (434)
Q Consensus 219 --------~~v~l~d~~~~~-~~~~-~~~~~~~i~~SP~g~~l~~-~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~~~w 287 (434)
.++++++++++. ...+ ..++|.++.|||+|+-+++ .|+ +...+.|+|++ ++.+..+....-..+-|
T Consensus 243 tn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGf--MPAkvtifnlr-~~~v~df~egpRN~~~f 319 (566)
T KOG2315|consen 243 TNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGF--MPAKVTIFNLR-GKPVFDFPEGPRNTAFF 319 (566)
T ss_pred CCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEec--ccceEEEEcCC-CCEeEeCCCCCccceEE
Confidence 145555555332 3344 4899999999999985555 444 77899999986 56666665555556899
Q ss_pred CCCCCEEEEEEcCCceeeCCcEEEEeecCc-eeeeeecccceeeEEEcCCCCCCCC
Q 013871 288 SPDGRYFMTATTAPRLQIDNGIKIFHHNGS-LFFKKMFDKLFQAEWKPVSPDKFGD 342 (434)
Q Consensus 288 spdg~~l~tas~~prl~~D~~i~iw~~~g~-~~~~~~~~~~~~~~w~p~~~~~~~~ 342 (434)
+|.|++|+.|+-. -| .|.+-|||+... ++.......-.-+.|.|++.+++.+
T Consensus 320 np~g~ii~lAGFG-NL--~G~mEvwDv~n~K~i~~~~a~~tt~~eW~PdGe~flTA 372 (566)
T KOG2315|consen 320 NPHGNIILLAGFG-NL--PGDMEVWDVPNRKLIAKFKAANTTVFEWSPDGEYFLTA 372 (566)
T ss_pred CCCCCEEEEeecC-CC--CCceEEEeccchhhccccccCCceEEEEcCCCcEEEEE
Confidence 9999999999872 12 568999999654 4555555566678899999987764
No 116
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.71 E-value=8.8e-15 Score=145.04 Aligned_cols=242 Identities=11% Similarity=0.067 Sum_probs=154.0
Q ss_pred CCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec----CCeEEEEeCCCCCCceeeeeecCCeeEEEEeC
Q 013871 25 EKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA----TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSK 100 (434)
Q Consensus 25 d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~----~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp 100 (434)
..+|.|||...+.. +.+.... ..+..++|||||+.|++.. +..|.+|++..... .........+..+.|||
T Consensus 178 ~~~l~~~d~dg~~~-~~lt~~~---~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~-~~l~~~~~~~~~~~~SP 252 (429)
T PRK03629 178 PYELRVSDYDGYNQ-FVVHRSP---QPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-RQVASFPRHNGAPAFSP 252 (429)
T ss_pred ceeEEEEcCCCCCC-EEeecCC---CceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCe-EEccCCCCCcCCeEECC
Confidence 45799999765443 3333322 4455899999999998763 24899999876432 11111122356789999
Q ss_pred CCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEE
Q 013871 101 APGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYL 180 (434)
Q Consensus 101 ~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l 180 (434)
+ +..+++..... ....|.+|++.+ + .+.+++........+.|+|||+.|++.... . +...||.+
T Consensus 253 D-G~~La~~~~~~--g~~~I~~~d~~t---g-~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~----~-----g~~~Iy~~ 316 (429)
T PRK03629 253 D-GSKLAFALSKT--GSLNLYVMDLAS---G-QIRQVTDGRSNNTEPTWFPDSQNLAYTSDQ----A-----GRPQVYKV 316 (429)
T ss_pred C-CCEEEEEEcCC--CCcEEEEEECCC---C-CEEEccCCCCCcCceEECCCCCEEEEEeCC----C-----CCceEEEE
Confidence 9 55555433221 123578888865 3 334444444566789999999998776321 1 23358888
Q ss_pred eeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccC-CCeEEEEecccceeEEeCCc-CeeEEEECCCCCeEEEEecCC
Q 013871 181 TTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFM-PASATIFNKKCRPILELGSG-PYNTVRWNPKGKFLCLAGFGN 258 (434)
Q Consensus 181 ~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~-~~~v~l~d~~~~~~~~~~~~-~~~~i~~SP~g~~l~~~~~~~ 258 (434)
+..+.....+... .+....+.|||||+.++++.... ...+.+||+.+.....+... ......|||||++|+.++.+.
T Consensus 317 d~~~g~~~~lt~~-~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~~~~~~p~~SpDG~~i~~~s~~~ 395 (429)
T PRK03629 317 NINGGAPQRITWE-GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDTFLDETPSIAPNGTMVIYSSSQG 395 (429)
T ss_pred ECCCCCeEEeecC-CCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCCCCCCCCceECCCCCEEEEEEcCC
Confidence 8776544444332 34456799999999998764332 23688899876665555322 234688999999999988655
Q ss_pred CCCeEEEEEccCCEEEEEeeCC--CceEEEECC
Q 013871 259 LPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSP 289 (434)
Q Consensus 259 ~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wsp 289 (434)
..+.+++++++.. ....+..+ .+...+|||
T Consensus 396 ~~~~l~~~~~~G~-~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 396 MGSVLNLVSTDGR-FKARLPATDGQVKFPAWSP 427 (429)
T ss_pred CceEEEEEECCCC-CeEECccCCCCcCCcccCC
Confidence 4456888888544 33333332 455689998
No 117
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.71 E-value=1.2e-16 Score=141.56 Aligned_cols=220 Identities=16% Similarity=0.275 Sum_probs=150.9
Q ss_pred CCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcC
Q 013871 48 TKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACG 126 (434)
Q Consensus 48 ~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~ 126 (434)
|+...++-+||+||.++|+++ |-.|+|+|++..-... .+ .. +-+++ ....
T Consensus 111 HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks---~~----~e--m~~~~-------------~qa~------- 161 (430)
T KOG0640|consen 111 HKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKS---KP----KE--MISGD-------------TQAR------- 161 (430)
T ss_pred cccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhc---ch----hh--hccCC-------------cccC-------
Confidence 447778889999999999996 5599999987532111 00 00 01110 0000
Q ss_pred CCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcC
Q 013871 127 KDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYS 206 (434)
Q Consensus 127 ~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspd 206 (434)
...|+++.-|-.++..+.|+|....| .+...|.+.+ |+.+.-...+.....+....+|.++.|+|.
T Consensus 162 ----hPvIRTlYDH~devn~l~FHPre~IL---iS~srD~tvK-------lFDfsK~saKrA~K~~qd~~~vrsiSfHPs 227 (430)
T KOG0640|consen 162 ----HPVIRTLYDHVDEVNDLDFHPRETIL---ISGSRDNTVK-------LFDFSKTSAKRAFKVFQDTEPVRSISFHPS 227 (430)
T ss_pred ----CceEeehhhccCcccceeecchhheE---EeccCCCeEE-------EEecccHHHHHHHHHhhccceeeeEeecCC
Confidence 12233334455567788888876643 3344566665 333321111111122333579999999999
Q ss_pred CCEEEEEEccCCCeEEEEecccceeE------EeCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEee-C
Q 013871 207 GSEFAVVYGFMPASATIFNKKCRPIL------ELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTR-A 279 (434)
Q Consensus 207 g~~~av~~g~~~~~v~l~d~~~~~~~------~~~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~-~ 279 (434)
|.++++ |.....+++||+.+-+.+ +.|++.++++.||+.|++.++|+ .||.|+|||--+++++.++. +
T Consensus 228 Gefllv--gTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaS---kDG~IklwDGVS~rCv~t~~~A 302 (430)
T KOG0640|consen 228 GEFLLV--GTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTAS---KDGAIKLWDGVSNRCVRTIGNA 302 (430)
T ss_pred CceEEE--ecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEec---cCCcEEeeccccHHHHHHHHhh
Confidence 998885 666679999999754433 23789999999999999999998 67899999988888887774 3
Q ss_pred C---CceEEEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceeee
Q 013871 280 E---CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFK 321 (434)
Q Consensus 280 ~---~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~-~g~~~~~ 321 (434)
| .+....|+.+|+||++.+. |..+++|.+ +|+.+..
T Consensus 303 H~gsevcSa~Ftkn~kyiLsSG~------DS~vkLWEi~t~R~l~~ 342 (430)
T KOG0640|consen 303 HGGSEVCSAVFTKNGKYILSSGK------DSTVKLWEISTGRMLKE 342 (430)
T ss_pred cCCceeeeEEEccCCeEEeecCC------cceeeeeeecCCceEEE
Confidence 3 4555899999999999999 999999998 5665544
No 118
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.71 E-value=1.2e-14 Score=144.84 Aligned_cols=244 Identities=14% Similarity=0.131 Sum_probs=155.3
Q ss_pred CCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec----CCeEEEEeCCCCCCceeeeeecCCeeEEEEeC
Q 013871 25 EKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA----TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSK 100 (434)
Q Consensus 25 d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~----~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp 100 (434)
..+|.+||.. |...+.+..+. ..+..++|||||+.|++.. +..|.+|++..... .........+..+.|||
T Consensus 181 ~~~l~~~d~d-g~~~~~lt~~~---~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~-~~l~~~~g~~~~~~~SP 255 (435)
T PRK05137 181 IKRLAIMDQD-GANVRYLTDGS---SLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR-ELVGNFPGMTFAPRFSP 255 (435)
T ss_pred ceEEEEECCC-CCCcEEEecCC---CCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE-EEeecCCCcccCcEECC
Confidence 4589999975 44445554432 4556899999999998874 24899999876432 11111223456789999
Q ss_pred CCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEE
Q 013871 101 APGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYL 180 (434)
Q Consensus 101 ~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l 180 (434)
+ +..+++.... .....|.+|++.. ..+..++.+........|+|||+.|++.... . |...||.+
T Consensus 256 D-G~~la~~~~~--~g~~~Iy~~d~~~----~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~----~-----g~~~Iy~~ 319 (435)
T PRK05137 256 D-GRKVVMSLSQ--GGNTDIYTMDLRS----GTTTRLTDSPAIDTSPSYSPDGSQIVFESDR----S-----GSPQLYVM 319 (435)
T ss_pred C-CCEEEEEEec--CCCceEEEEECCC----CceEEccCCCCccCceeEcCCCCEEEEEECC----C-----CCCeEEEE
Confidence 9 4555443222 2234566777754 2344455455556678999999998875321 1 33468888
Q ss_pred eeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCC-CeEEEEecccceeEEeC-CcCeeEEEECCCCCeEEEEecCC
Q 013871 181 TTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMP-ASATIFNKKCRPILELG-SGPYNTVRWNPKGKFLCLAGFGN 258 (434)
Q Consensus 181 ~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~-~~v~l~d~~~~~~~~~~-~~~~~~i~~SP~g~~l~~~~~~~ 258 (434)
+..+.....+... .+.+..+.|||||+.++++..... ..+.++|+.+.....+. ......+.|||||++|+......
T Consensus 320 d~~g~~~~~lt~~-~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt~~~~~~~p~~spDG~~i~~~~~~~ 398 (435)
T PRK05137 320 NADGSNPRRISFG-GGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERILTSGFLVEGPTWAPNGRVIMFFRQTP 398 (435)
T ss_pred ECCCCCeEEeecC-CCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEeccCCCCCCCCeECCCCCEEEEEEccC
Confidence 8777655554432 455677899999999998653222 37888898765554442 33456789999999988866432
Q ss_pred CC---CeEEEEEccCCEEEEEeeCCCceEEEECCC
Q 013871 259 LP---GDMAFWDYVDGKQLGTTRAECSVTSEWSPD 290 (434)
Q Consensus 259 ~~---g~i~iwd~~~~~~i~~~~~~~~~~~~wspd 290 (434)
.. ..|+++|+..+..........+...+|||-
T Consensus 399 ~~~~~~~L~~~dl~g~~~~~l~~~~~~~~p~Wsp~ 433 (435)
T PRK05137 399 GSGGAPKLYTVDLTGRNEREVPTPGDASDPAWSPL 433 (435)
T ss_pred CCCCcceEEEEECCCCceEEccCCCCccCcccCCC
Confidence 22 478999987664432222224555889873
No 119
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.71 E-value=2e-15 Score=146.64 Aligned_cols=312 Identities=13% Similarity=0.188 Sum_probs=195.1
Q ss_pred cceEEecCCCc---EEEEEecCCCCCCCcEEEEEcCCCc---------------------EEEEEe----e---cCcCCC
Q 013871 2 LLLLTCLRVGL---IIQTFQKSSTPQEKNVILWKTETGE---------------------AVYQLF----Q---KNMTKT 50 (434)
Q Consensus 2 V~~l~fSP~g~---~L~t~~~~~~~~d~~v~iWd~~~g~---------------------~~~~~~----~---~~~~~~ 50 (434)
|++|+|...|. +|++.+ +|..|+||.+.-+. .+..+. . ...|.+
T Consensus 194 Irsl~f~~~~~~~~~laS~S-----QD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeD 268 (764)
T KOG1063|consen 194 IRSLAFARLGGDDLLLASSS-----QDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHED 268 (764)
T ss_pred hhhhhhhccCCCcEEEEecC-----CceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCccc
Confidence 56788876655 777777 89999999874222 111111 0 012446
Q ss_pred CCCeeeecCCCc-EEEEecCCeEEEEeCCCCCCceeeeee-------cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEE
Q 013871 51 TWPSIRFSSDEA-VACRMATNEIQFFDTTDFPKGILYRLR-------VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQI 122 (434)
Q Consensus 51 ~~~~~~~S~d~~-~la~~~~~~i~v~~~~~~~~~~~~~~~-------~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i 122 (434)
-+.++.|+|++. +|....|+++.+|........-...++ ..+..+..|+|+++..|+ .+.-|-.++
T Consensus 269 WV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~------~g~~Gg~hl 342 (764)
T KOG1063|consen 269 WVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIA------HGRTGGFHL 342 (764)
T ss_pred ceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEE------ecccCcEEE
Confidence 677899999995 555557889999998764321122222 224677889998644443 244567889
Q ss_pred EEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeec--ceeEEEEeeCCcceeeeecCCCCCeEE
Q 013871 123 YACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYG--ESKLNYLTTDGTHEGLVPLRKEGPVHD 200 (434)
Q Consensus 123 ~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g--~~~l~~l~~~~~~~~~v~l~~~~~i~~ 200 (434)
|...+...=.+....++|-.++..+.|.|.|.+|+.. ..|++.+.++- .+.-| ++..-|--|...+.+
T Consensus 343 Wkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsv---s~DQTTRlFa~wg~q~~w-------HEiaRPQiHGyDl~c 412 (764)
T KOG1063|consen 343 WKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSV---SLDQTTRLFARWGRQQEW-------HEIARPQIHGYDLTC 412 (764)
T ss_pred EeccCccceeeccccccccccceeeeecCCCCEEEEe---ccccceeeecccccccce-------eeeccccccccccee
Confidence 9833211113334566788899999999999987543 36777665531 11100 000001112334455
Q ss_pred EEECcCCCEEEEEEccCCCeEEEEecc---------------------------------cce-----------------
Q 013871 201 VQWSYSGSEFAVVYGFMPASATIFNKK---------------------------------CRP----------------- 230 (434)
Q Consensus 201 v~wspdg~~~av~~g~~~~~v~l~d~~---------------------------------~~~----------------- 230 (434)
+++-+...+|+ +|....-+++|+.- .++
T Consensus 413 ~~~vn~~~~FV--SgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~e 490 (764)
T KOG1063|consen 413 LSFVNEDLQFV--SGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAE 490 (764)
T ss_pred eehccCCceee--ecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeee
Confidence 55554322333 44444344444210 000
Q ss_pred ---------------------------eEEe--CCcCeeEEEECCCCCeEEEEecCCC--CCeEEEEEccCCEEEEEeeC
Q 013871 231 ---------------------------ILEL--GSGPYNTVRWNPKGKFLCLAGFGNL--PGDMAFWDYVDGKQLGTTRA 279 (434)
Q Consensus 231 ---------------------------~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~--~g~i~iwd~~~~~~i~~~~~ 279 (434)
++.+ |...+.+++.||+|+++|++...+. ...|.+|++.+...+..+..
T Consensus 491 t~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~ 570 (764)
T KOG1063|consen 491 TPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEG 570 (764)
T ss_pred cccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecc
Confidence 0001 3455778999999999999865442 46799999999988888888
Q ss_pred C--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceeeee-------ecccceeeEEEcCCCCCCCC
Q 013871 280 E--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKK-------MFDKLFQAEWKPVSPDKFGD 342 (434)
Q Consensus 280 ~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~~~~~-------~~~~~~~~~w~p~~~~~~~~ 342 (434)
| .++.++|||||+||++++- |+++.+|.......... |..-+|+..|.|+.-+.++.
T Consensus 571 HsLTVT~l~FSpdg~~LLsvsR------DRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTa 636 (764)
T KOG1063|consen 571 HSLTVTRLAFSPDGRYLLSVSR------DRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATA 636 (764)
T ss_pred cceEEEEEEECCCCcEEEEeec------CceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEe
Confidence 8 5566999999999999999 99999999854433222 33358999999999886665
No 120
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.70 E-value=1e-15 Score=136.34 Aligned_cols=259 Identities=15% Similarity=0.169 Sum_probs=183.5
Q ss_pred CCCCeeeecCCCcEEEEe-cCCeEEEEeCCCCCCcee--------eeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceE
Q 013871 50 TTWPSIRFSSDEAVACRM-ATNEIQFFDTTDFPKGIL--------YRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASV 120 (434)
Q Consensus 50 ~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~~~~~~--------~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v 120 (434)
.-+.|.+|||||+||+++ .||-|.||+..+...... .-...+.|.++.||-+ ..++| ++..++.|
T Consensus 214 Sh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRD-sEMlA-----sGsqDGkI 287 (508)
T KOG0275|consen 214 SHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRD-SEMLA-----SGSQDGKI 287 (508)
T ss_pred cchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeeccc-HHHhh-----ccCcCCcE
Confidence 344588999999999998 588999999765322111 1123346888888887 34444 57788999
Q ss_pred EEEEcCCCCCCCceeeee-ecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeec-CCCCCe
Q 013871 121 QIYACGKDLQSQPLARRS-FFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL-RKEGPV 198 (434)
Q Consensus 121 ~i~~~~~~~~~~~i~~~~-~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l-~~~~~i 198 (434)
++|.+.+ +++++... .|...++++.|+.|+..++. ...|.+.+ ++-+. .+ .+...+ .+...|
T Consensus 288 KvWri~t---G~ClRrFdrAHtkGvt~l~FSrD~SqiLS---~sfD~tvR-------iHGlK--SG-K~LKEfrGHsSyv 351 (508)
T KOG0275|consen 288 KVWRIET---GQCLRRFDRAHTKGVTCLSFSRDNSQILS---ASFDQTVR-------IHGLK--SG-KCLKEFRGHSSYV 351 (508)
T ss_pred EEEEEec---chHHHHhhhhhccCeeEEEEccCcchhhc---ccccceEE-------Eeccc--cc-hhHHHhcCccccc
Confidence 9999998 88887665 67788999999999998754 23454443 33221 11 111111 236788
Q ss_pred EEEEECcCCCEEEEEEccCCCeEEEEecc-cceeEEe----CCcCeeEEEECCCC-CeEEEEecCCCCCeEEEEEccCCE
Q 013871 199 HDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL----GSGPYNTVRWNPKG-KFLCLAGFGNLPGDMAFWDYVDGK 272 (434)
Q Consensus 199 ~~v~wspdg~~~av~~g~~~~~v~l~d~~-~~~~~~~----~~~~~~~i~~SP~g-~~l~~~~~~~~~g~i~iwd~~~~~ 272 (434)
+.+.|++||.+++ +.+.|+++++|+.+ ++.+.+| ..-++|++..-|.. ..++++...| +|+|.++. |.
T Consensus 352 n~a~ft~dG~~ii--saSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsn---tv~imn~q-GQ 425 (508)
T KOG0275|consen 352 NEATFTDDGHHII--SASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSN---TVYIMNMQ-GQ 425 (508)
T ss_pred cceEEcCCCCeEE--EecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCC---eEEEEecc-ce
Confidence 9999999999988 67789999999996 3444444 35678888877755 4777777665 89999875 55
Q ss_pred EEEEeeC-----CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceeeeeec--ccceeeEEEcCCCCCCCC
Q 013871 273 QLGTTRA-----ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKKMF--DKLFQAEWKPVSPDKFGD 342 (434)
Q Consensus 273 ~i~~~~~-----~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~-~g~~~~~~~~--~~~~~~~w~p~~~~~~~~ 342 (434)
.+..+.. .+.+.+..||.|+++...+. |+.++.|.+ +|++-...+. ..+..+.-+|....+.+.
T Consensus 426 vVrsfsSGkREgGdFi~~~lSpkGewiYcigE------D~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsY 497 (508)
T KOG0275|consen 426 VVRSFSSGKREGGDFINAILSPKGEWIYCIGE------DGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASY 497 (508)
T ss_pred EEeeeccCCccCCceEEEEecCCCcEEEEEcc------CcEEEEEEeecCceeeeeecccccccccccCcccchhhhh
Confidence 6665543 36677999999999999999 999999998 5666554443 346667777776555443
No 121
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.70 E-value=5.3e-15 Score=137.46 Aligned_cols=247 Identities=13% Similarity=0.219 Sum_probs=165.8
Q ss_pred CCCCCeeeecCCCcEE-EEec-CCeEEEEeCCCCCCce----------eeeeecCCeeEEEEeCCCCCeEEEEecCCCCC
Q 013871 49 KTTWPSIRFSSDEAVA-CRMA-TNEIQFFDTTDFPKGI----------LYRLRVPGVAAFEVSKAPGSHVAVFVPESKGS 116 (434)
Q Consensus 49 ~~~~~~~~~S~d~~~l-a~~~-~~~i~v~~~~~~~~~~----------~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~ 116 (434)
...+..+++-|....| |+.. .+.|.|||........ ....|...=.+++|++....+++ +.+.
T Consensus 124 ~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Ll-----s~~~ 198 (422)
T KOG0264|consen 124 DGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLL-----SGSD 198 (422)
T ss_pred CccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEe-----eccC
Confidence 3667678888866544 4443 4699999975432111 22333332456888887554554 4577
Q ss_pred CceEEEEEcCCCCC----CCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCC-cceeeee
Q 013871 117 PASVQIYACGKDLQ----SQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDG-THEGLVP 191 (434)
Q Consensus 117 ~~~v~i~~~~~~~~----~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~-~~~~~v~ 191 (434)
++.|++|++..... ..+......|...+..++|++....++..+.. | + .|.+.++.. .......
T Consensus 199 d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~d--d-------~--~L~iwD~R~~~~~~~~~ 267 (422)
T KOG0264|consen 199 DHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGD--D-------G--KLMIWDTRSNTSKPSHS 267 (422)
T ss_pred CCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecC--C-------C--eEEEEEcCCCCCCCccc
Confidence 88999999976432 22334455566777788999988877554322 2 1 234444432 1122222
Q ss_pred -cCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc--cceeEEe--CCcCeeEEEECCCCC-eEEEEecCCCCCeEEE
Q 013871 192 -LRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK--CRPILEL--GSGPYNTVRWNPKGK-FLCLAGFGNLPGDMAF 265 (434)
Q Consensus 192 -l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~--~~~~~~~--~~~~~~~i~~SP~g~-~l~~~~~~~~~g~i~i 265 (434)
-.+.++|++++|+|-+..+ +++|+.|++|.|||+| +.+++.+ |...|.++.|||+-. .|+++| .++.+.|
T Consensus 268 ~~ah~~~vn~~~fnp~~~~i-lAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg---~D~rl~v 343 (422)
T KOG0264|consen 268 VKAHSAEVNCVAFNPFNEFI-LATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSG---TDRRLNV 343 (422)
T ss_pred ccccCCceeEEEeCCCCCce-EEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecc---cCCcEEE
Confidence 2358999999999966433 3389999999999997 4567766 789999999999876 666666 5679999
Q ss_pred EEccCC--------------EEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceee
Q 013871 266 WDYVDG--------------KQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFF 320 (434)
Q Consensus 266 wd~~~~--------------~~i~~~~~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~~~ 320 (434)
||+..- +++....+| .+..+.|+|....+++.... ||.+.||.+...+..
T Consensus 344 WDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~Svae-----DN~LqIW~~s~~i~~ 409 (422)
T KOG0264|consen 344 WDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAE-----DNILQIWQMAENIYN 409 (422)
T ss_pred EeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecC-----CceEEEeeccccccC
Confidence 998732 344555666 56669999998886665554 999999998765543
No 122
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.70 E-value=1.4e-13 Score=132.12 Aligned_cols=263 Identities=10% Similarity=0.075 Sum_probs=159.5
Q ss_pred CCCcEEEEEcCC-Cc--EEEEEeecCcCCCCCCeeeecCCCcEEEEe--cCCeEEEEeCCCCCCc-eeeeeec-CCeeEE
Q 013871 24 QEKNVILWKTET-GE--AVYQLFQKNMTKTTWPSIRFSSDEAVACRM--ATNEIQFFDTTDFPKG-ILYRLRV-PGVAAF 96 (434)
Q Consensus 24 ~d~~v~iWd~~~-g~--~~~~~~~~~~~~~~~~~~~~S~d~~~la~~--~~~~i~v~~~~~~~~~-~~~~~~~-~~v~~~ 96 (434)
.++.|.+|++.+ |+ .+..+... .....++++||+++|+.+ .++.|.+|++...... ....... .....+
T Consensus 10 ~~~~I~~~~~~~~g~l~~~~~~~~~----~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i 85 (330)
T PRK11028 10 ESQQIHVWNLNHEGALTLLQVVDVP----GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHI 85 (330)
T ss_pred CCCCEEEEEECCCCceeeeeEEecC----CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEE
Confidence 578999999964 43 44454332 233368999999988765 3579999998632221 1122222 245678
Q ss_pred EEeCCCCCeEEEEecCCCCCCceEEEEEcCCCC-CCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecce
Q 013871 97 EVSKAPGSHVAVFVPESKGSPASVQIYACGKDL-QSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGES 175 (434)
Q Consensus 97 ~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~-~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~ 175 (434)
.++|++...++. . ...+.|.+|++.... ....+.... .......+.++|+|+++++... +..
T Consensus 86 ~~~~~g~~l~v~-~----~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~-----------~~~ 148 (330)
T PRK11028 86 STDHQGRFLFSA-S----YNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCL-----------KED 148 (330)
T ss_pred EECCCCCEEEEE-E----cCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeC-----------CCC
Confidence 999985433322 1 124689999986421 011222111 1123456788999998865321 112
Q ss_pred eEEEEeeCCcce------eeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc--ce---eEEeCC------c-
Q 013871 176 KLNYLTTDGTHE------GLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC--RP---ILELGS------G- 237 (434)
Q Consensus 176 ~l~~l~~~~~~~------~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~--~~---~~~~~~------~- 237 (434)
.+..+++..... ..+.+......+.++|+|||++++++ ...++.|.+||++. .. +..+.. +
T Consensus 149 ~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~-~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~ 227 (330)
T PRK11028 149 RIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCV-NELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDT 227 (330)
T ss_pred EEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEE-ecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCC
Confidence 234444332111 11122223445789999999999875 44467999999852 12 222211 1
Q ss_pred -CeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC----EEEEEeeC-CCceEEEECCCCCEEEEEEcCCceeeCCcEEE
Q 013871 238 -PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG----KQLGTTRA-ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKI 311 (434)
Q Consensus 238 -~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~----~~i~~~~~-~~~~~~~wspdg~~l~tas~~prl~~D~~i~i 311 (434)
....+.++|+|++|+++..+ .+.|.+|+++.. +.+..... .....+.++|||++|+++... +++|.|
T Consensus 228 ~~~~~i~~~pdg~~lyv~~~~--~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~-----~~~v~v 300 (330)
T PRK11028 228 RWAADIHITPDGRHLYACDRT--ASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQK-----SHHISV 300 (330)
T ss_pred ccceeEEECCCCCEEEEecCC--CCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEcc-----CCcEEE
Confidence 12358899999999988532 469999998643 23333322 245569999999999998754 899999
Q ss_pred Eeec
Q 013871 312 FHHN 315 (434)
Q Consensus 312 w~~~ 315 (434)
|+++
T Consensus 301 ~~~~ 304 (330)
T PRK11028 301 YEID 304 (330)
T ss_pred EEEc
Confidence 9985
No 123
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.70 E-value=5.7e-15 Score=146.63 Aligned_cols=249 Identities=14% Similarity=0.145 Sum_probs=150.7
Q ss_pred CcEEEEEe-cCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC----CeEEEEeCCCCCCcee
Q 013871 11 GLIIQTFQ-KSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT----NEIQFFDTTDFPKGIL 85 (434)
Q Consensus 11 g~~L~t~~-~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~----~~i~v~~~~~~~~~~~ 85 (434)
++.++... +..+..+..|.|||...+. .+.+.... ..+..++|||||+.|++... .+|.+||+........
T Consensus 168 ~~ria~v~~~~~~~~~~~i~i~d~dg~~-~~~lt~~~---~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l 243 (429)
T PRK01742 168 RTRIAYVVQKNGGSQPYEVRVADYDGFN-QFIVNRSS---QPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVV 243 (429)
T ss_pred CCEEEEEEEEcCCCceEEEEEECCCCCC-ceEeccCC---CccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEE
Confidence 34554433 2222345789999975443 44444332 45568999999999998742 3799999876432111
Q ss_pred eeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEeccc
Q 013871 86 YRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVD 165 (434)
Q Consensus 86 ~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d 165 (434)
... ......+.|||+ +..|++..... + ...|.+|++.. ..+...+.+......+.|+|||+.|++.... +
T Consensus 244 ~~~-~g~~~~~~wSPD-G~~La~~~~~~-g-~~~Iy~~d~~~----~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~--~ 313 (429)
T PRK01742 244 ASF-RGHNGAPAFSPD-GSRLAFASSKD-G-VLNIYVMGANG----GTPSQLTSGAGNNTEPSWSPDGQSILFTSDR--S 313 (429)
T ss_pred ecC-CCccCceeECCC-CCEEEEEEecC-C-cEEEEEEECCC----CCeEeeccCCCCcCCEEECCCCCEEEEEECC--C
Confidence 111 123456899999 45555433211 1 12344445543 3345555556667789999999998775321 1
Q ss_pred ccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeEEe-CCcCeeEEEE
Q 013871 166 KTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL-GSGPYNTVRW 244 (434)
Q Consensus 166 ~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~~-~~~~~~~i~~ 244 (434)
|...||.++..+.....+ ...+ ...+|+|||+.+++..+ + .+.+||+.......+ .......+.|
T Consensus 314 -------g~~~I~~~~~~~~~~~~l--~~~~--~~~~~SpDG~~ia~~~~--~-~i~~~Dl~~g~~~~lt~~~~~~~~~~ 379 (429)
T PRK01742 314 -------GSPQVYRMSASGGGASLV--GGRG--YSAQISADGKTLVMING--D-NVVKQDLTSGSTEVLSSTFLDESPSI 379 (429)
T ss_pred -------CCceEEEEECCCCCeEEe--cCCC--CCccCCCCCCEEEEEcC--C-CEEEEECCCCCeEEecCCCCCCCceE
Confidence 233577777665533333 2233 56889999999987543 3 566789865443333 2223456889
Q ss_pred CCCCCeEEEEecCCCCCeEEEEEc--cCCEEEEEeeCC--CceEEEECCC
Q 013871 245 NPKGKFLCLAGFGNLPGDMAFWDY--VDGKQLGTTRAE--CSVTSEWSPD 290 (434)
Q Consensus 245 SP~g~~l~~~~~~~~~g~i~iwd~--~~~~~i~~~~~~--~~~~~~wspd 290 (434)
+|||++|+.++.+ |.+.+|++ .+++.+..+.++ .+..++|||-
T Consensus 380 sPdG~~i~~~s~~---g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 380 SPNGIMIIYSSTQ---GLGKVLQLVSADGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred CCCCCEEEEEEcC---CCceEEEEEECCCCceEEccCCCCCCCCcccCCC
Confidence 9999999998843 45666654 246666666544 3456899984
No 124
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.69 E-value=2e-15 Score=129.79 Aligned_cols=233 Identities=13% Similarity=0.151 Sum_probs=157.0
Q ss_pred eEEecCCCcEEEEEecCCCCCCCcEEEEEcCCC---cEEEEEeecCcCCCCCCeeeecC--CCcEEEEe-cCCeEEEEeC
Q 013871 4 LLTCLRVGLIIQTFQKSSTPQEKNVILWKTETG---EAVYQLFQKNMTKTTWPSIRFSS--DEAVACRM-ATNEIQFFDT 77 (434)
Q Consensus 4 ~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g---~~~~~~~~~~~~~~~~~~~~~S~--d~~~la~~-~~~~i~v~~~ 77 (434)
.+...--|+.|+|++ .|+.|+|+.+.+. ..+.++.+++ ..+-.+.|.. -|.+||++ .|+.|.||+-
T Consensus 16 da~lDyygkrlATcs-----SD~tVkIf~v~~n~~s~ll~~L~Gh~---GPVwqv~wahPk~G~iLAScsYDgkVIiWke 87 (299)
T KOG1332|consen 16 DAQLDYYGKRLATCS-----SDGTVKIFEVRNNGQSKLLAELTGHS---GPVWKVAWAHPKFGTILASCSYDGKVIIWKE 87 (299)
T ss_pred Hhhhhhhcceeeeec-----CCccEEEEEEcCCCCceeeeEecCCC---CCeeEEeecccccCcEeeEeecCceEEEEec
Confidence 334444699999999 8999999999654 3456666654 4444899987 89999998 5889999997
Q ss_pred CCC--CCceeeeeecCCeeEEEEeCCCC-CeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCC
Q 013871 78 TDF--PKGILYRLRVPGVAAFEVSKAPG-SHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGST 154 (434)
Q Consensus 78 ~~~--~~~~~~~~~~~~v~~~~~sp~~~-~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~ 154 (434)
.+. .+......|...|++++|.|..- .++++- ..++.|.|.++... |-
T Consensus 88 ~~g~w~k~~e~~~h~~SVNsV~wapheygl~Laca-----sSDG~vsvl~~~~~------------------------g~ 138 (299)
T KOG1332|consen 88 ENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACA-----SSDGKVSVLTYDSS------------------------GG 138 (299)
T ss_pred CCCchhhhhhhhhhcccceeecccccccceEEEEe-----eCCCcEEEEEEcCC------------------------CC
Confidence 664 23334455666788888888742 233332 22344555544331 00
Q ss_pred eEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcC---C-----------CEEEEEEccCCCe
Q 013871 155 GLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYS---G-----------SEFAVVYGFMPAS 220 (434)
Q Consensus 155 ~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspd---g-----------~~~av~~g~~~~~ 220 (434)
-....+...++-.|++++|.|. | ++|+ +|.+|..
T Consensus 139 ------------------------------w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlv--SgGcDn~ 186 (299)
T KOG1332|consen 139 ------------------------------WTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLV--SGGCDNL 186 (299)
T ss_pred ------------------------------ccchhhhhccccccceeeecCcCCCccccccCcccccceee--ccCCccc
Confidence 0011112223456777777775 4 4566 7999999
Q ss_pred EEEEecccc-----eeEEeCCcCeeEEEECCCC----CeEEEEecCCCCCeEEEEEccCC------EEEEEeeCCCceEE
Q 013871 221 ATIFNKKCR-----PILELGSGPYNTVRWNPKG----KFLCLAGFGNLPGDMAFWDYVDG------KQLGTTRAECSVTS 285 (434)
Q Consensus 221 v~l~d~~~~-----~~~~~~~~~~~~i~~SP~g----~~l~~~~~~~~~g~i~iwd~~~~------~~i~~~~~~~~~~~ 285 (434)
|+||+.... ....-|.+-+..++|.|.- .+|++++ .||++.||-.+.. +++..+.. .+..+
T Consensus 187 VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~S---qDg~viIwt~~~e~e~wk~tll~~f~~-~~w~v 262 (299)
T KOG1332|consen 187 VKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCS---QDGTVIIWTKDEEYEPWKKTLLEEFPD-VVWRV 262 (299)
T ss_pred eeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEec---CCCcEEEEEecCccCcccccccccCCc-ceEEE
Confidence 999987542 2223388899999999965 3778887 7889999976521 12222211 34569
Q ss_pred EECCCCCEEEEEEcCCceeeCCcEEEEeec
Q 013871 286 EWSPDGRYFMTATTAPRLQIDNGIKIFHHN 315 (434)
Q Consensus 286 ~wspdg~~l~tas~~prl~~D~~i~iw~~~ 315 (434)
.||+.|..|+++.. ||.|.+|.-+
T Consensus 263 SWS~sGn~LaVs~G------dNkvtlwke~ 286 (299)
T KOG1332|consen 263 SWSLSGNILAVSGG------DNKVTLWKEN 286 (299)
T ss_pred EEeccccEEEEecC------CcEEEEEEeC
Confidence 99999999999999 9999999754
No 125
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.69 E-value=7.4e-15 Score=137.64 Aligned_cols=281 Identities=10% Similarity=0.104 Sum_probs=184.9
Q ss_pred CCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe--cCCeEEEEeCCCCC--CceeeeeecCCeeEEEEeC
Q 013871 25 EKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM--ATNEIQFFDTTDFP--KGILYRLRVPGVAAFEVSK 100 (434)
Q Consensus 25 d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~--~~~~i~v~~~~~~~--~~~~~~~~~~~v~~~~~sp 100 (434)
...++|||+..-+....|.+.... -.+..+.|+....+++.. .+..+++|.-.... .....+...+.-.+++...
T Consensus 11 gd~~kl~D~s~~~~~~~~~~~t~~-pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s 89 (673)
T KOG4378|consen 11 GDKTKLSDFSDLETKSEYVHQTAE-PGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACAS 89 (673)
T ss_pred CCceEEeecccccCccccccCCCC-CcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhh
Confidence 467999999766554444443221 235588999877543333 34578888755431 1111122222211221111
Q ss_pred CCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEE
Q 013871 101 APGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYL 180 (434)
Q Consensus 101 ~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l 180 (434)
. ..+++ ++|..+.|+||++.. ...++....|+..+..+.+|-...+|+.... .|+.-|+-+
T Consensus 90 ~-S~y~~-----sgG~~~~Vkiwdl~~---kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~----------gGdiiih~~ 150 (673)
T KOG4378|consen 90 Q-SLYEI-----SGGQSGCVKIWDLRA---KLIHRFLKDHQSTVTYVDYNNTDEYIASVSD----------GGDIIIHGT 150 (673)
T ss_pred c-ceeee-----ccCcCceeeehhhHH---HHHhhhccCCcceeEEEEecCCcceeEEecc----------CCcEEEEec
Confidence 1 11111 467888999999976 5666667778888889999988888765421 133333333
Q ss_pred eeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccc-eeEEe---CCcCeeEEEECCCCC-eEEEEe
Q 013871 181 TTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PILEL---GSGPYNTVRWNPKGK-FLCLAG 255 (434)
Q Consensus 181 ~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~-~~~~~---~~~~~~~i~~SP~g~-~l~~~~ 255 (434)
... .....+..+....|.-+.|||..+.+.++. ..+|.|++||..+. +++.+ |..|...|+|||... +|++.|
T Consensus 151 ~t~-~~tt~f~~~sgqsvRll~ys~skr~lL~~a-sd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG 228 (673)
T KOG4378|consen 151 KTK-QKTTTFTIDSGQSVRLLRYSPSKRFLLSIA-SDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVG 228 (673)
T ss_pred ccC-ccccceecCCCCeEEEeecccccceeeEee-ccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEec
Confidence 221 112223333345667899999888888764 45899999999754 45544 889999999999765 667778
Q ss_pred cCCCCCeEEEEEccCCEEEEEeeC-CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCce--ee--eeecccceee
Q 013871 256 FGNLPGDMAFWDYVDGKQLGTTRA-ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL--FF--KKMFDKLFQA 330 (434)
Q Consensus 256 ~~~~~g~i~iwd~~~~~~i~~~~~-~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~--~~--~~~~~~~~~~ 330 (434)
+|..|++||....+....+.. +..+.++|+++|.+|+.|+. .|.|..||+.+.. +. ..+...+..+
T Consensus 229 ---~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~s------~G~~i~YD~R~~k~Pv~v~sah~~sVt~v 299 (673)
T KOG4378|consen 229 ---YDKKINIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCAGNS------KGELIAYDMRSTKAPVAVRSAHDASVTRV 299 (673)
T ss_pred ---ccceEEEeecccccccceeeecCCcceeeecCCceEEEeecC------CceEEEEecccCCCCceEeeecccceeEE
Confidence 455999999998776666554 45566999999999999999 9999999997762 22 2344569999
Q ss_pred EEEcCC
Q 013871 331 EWKPVS 336 (434)
Q Consensus 331 ~w~p~~ 336 (434)
+|+|-+
T Consensus 300 afq~s~ 305 (673)
T KOG4378|consen 300 AFQPSP 305 (673)
T ss_pred Eeeecc
Confidence 999987
No 126
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.69 E-value=1.5e-15 Score=137.90 Aligned_cols=226 Identities=20% Similarity=0.318 Sum_probs=150.4
Q ss_pred CeeEEEEeCCCCC-eEEEEecCCCCCCceEEEEEcCCC-------------CCCCceeeeeecccceeEEEECCCCCeEE
Q 013871 92 GVAAFEVSKAPGS-HVAVFVPESKGSPASVQIYACGKD-------------LQSQPLARRSFFRCSTVQLNWNRGSTGLL 157 (434)
Q Consensus 92 ~v~~~~~sp~~~~-~ia~~~~~~~~~~~~v~i~~~~~~-------------~~~~~i~~~~~~~~~~~~~~ws~~G~~l~ 157 (434)
.+..+..++-++. +.++|. ..|.|.||++... +..+++.+...|+..-..+.|||--...+
T Consensus 153 ~~NRvr~~~~~~~~~~asws-----e~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~L 227 (440)
T KOG0302|consen 153 GINRVRVSRLGNEVLCASWS-----ENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRL 227 (440)
T ss_pred ccceeeecccCCcceeeeec-----ccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccc
Confidence 4555555665433 444443 3468999997531 23677888888998899999999433211
Q ss_pred EEEEecccccCceeecceeEEEEeeC-Ccc-eeeee-cCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccce----
Q 013871 158 AVAQSDVDKTNQSYYGESKLNYLTTD-GTH-EGLVP-LRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP---- 230 (434)
Q Consensus 158 ~~~~~~~d~~~~~~~g~~~l~~l~~~-~~~-~~~v~-l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~---- 230 (434)
. + .|.... +|+.... |.- ....+ ..++..|.+++|||..+-++. +++-|+.|+|||++..+
T Consensus 228 l--s--GDc~~~-------I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfa-ScS~DgsIrIWDiRs~~~~~~ 295 (440)
T KOG0302|consen 228 L--S--GDCVKG-------IHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFA-SCSCDGSIRIWDIRSGPKKAA 295 (440)
T ss_pred c--c--Cccccc-------eEeeeeccCceeecCccccccccchhhhccCCccCceEE-eeecCceEEEEEecCCCccce
Confidence 1 1 222222 2222111 110 01111 235788999999998765444 57779999999998552
Q ss_pred -eEEeCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC---EEEEEeeCC--CceEEEECCCCCEEEEEEcCCcee
Q 013871 231 -ILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG---KQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQ 304 (434)
Q Consensus 231 -~~~~~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~---~~i~~~~~~--~~~~~~wspdg~~l~tas~~prl~ 304 (434)
...-|.+.||-|.|+-+-.+||+|+ .+|++.|||+++. +.+..+..| .+++++|+|....++.++..
T Consensus 296 ~~~kAh~sDVNVISWnr~~~lLasG~---DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~---- 368 (440)
T KOG0302|consen 296 VSTKAHNSDVNVISWNRREPLLASGG---DDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGE---- 368 (440)
T ss_pred eEeeccCCceeeEEccCCcceeeecC---CCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccC----
Confidence 2344888999999999988888887 6699999998854 567777766 67789999976655544443
Q ss_pred eCCcEEEEeecC--------------------ceeeeeec-ccceeeEEEcCCCCCCCC
Q 013871 305 IDNGIKIFHHNG--------------------SLFFKKMF-DKLFQAEWKPVSPDKFGD 342 (434)
Q Consensus 305 ~D~~i~iw~~~g--------------------~~~~~~~~-~~~~~~~w~p~~~~~~~~ 342 (434)
|+.|.|||+.= ++++...- .++.++.|+++-|.++-.
T Consensus 369 -D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvs 426 (440)
T KOG0302|consen 369 -DNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVS 426 (440)
T ss_pred -CCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEE
Confidence 99999999821 13333322 478899999998887654
No 127
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.69 E-value=1.4e-16 Score=143.05 Aligned_cols=237 Identities=12% Similarity=0.203 Sum_probs=168.0
Q ss_pred EEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCC
Q 013871 39 VYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSP 117 (434)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~ 117 (434)
+.++...+.+..++-|+++ |+..++++ -|++|.|||.++.........|...|-++.+.- . +.+ ++..+
T Consensus 187 ~~rinc~Se~skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~---r-vii----sGSSD 256 (499)
T KOG0281|consen 187 LQRINCRSENSKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDE---R-VIV----SGSSD 256 (499)
T ss_pred eeeecCCcccCCceEEEEe--cchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccc---e-EEE----ecCCC
Confidence 4445444434456668888 44455555 689999999998776666667777777776642 2 222 45677
Q ss_pred ceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcc-eeeeecCCCC
Q 013871 118 ASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH-EGLVPLRKEG 196 (434)
Q Consensus 118 ~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~-~~~v~l~~~~ 196 (434)
++|++|++.+ +.++.+.-.|...+..+.++.. + +.+...|.+... |.+...... -..+...+..
T Consensus 257 sTvrvWDv~t---ge~l~tlihHceaVLhlrf~ng--~---mvtcSkDrsiaV-------Wdm~sps~it~rrVLvGHrA 321 (499)
T KOG0281|consen 257 STVRVWDVNT---GEPLNTLIHHCEAVLHLRFSNG--Y---MVTCSKDRSIAV-------WDMASPTDITLRRVLVGHRA 321 (499)
T ss_pred ceEEEEeccC---CchhhHHhhhcceeEEEEEeCC--E---EEEecCCceeEE-------EeccCchHHHHHHHHhhhhh
Confidence 8999999998 8888888777778888888752 3 223336666664 444332221 1233445678
Q ss_pred CeEEEEECcCCCEEEEEEccCCCeEEEEecc-cceeEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEE
Q 013871 197 PVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQ 273 (434)
Q Consensus 197 ~i~~v~wspdg~~~av~~g~~~~~v~l~d~~-~~~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~ 273 (434)
.|+.++|+ .++++ +.+.|.++++|++. ++.+..+ |...+-|+.| .|+++++|+.|+ +|++||++.|++
T Consensus 322 aVNvVdfd--~kyIV--sASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDn---tIRlwdi~~G~c 392 (499)
T KOG0281|consen 322 AVNVVDFD--DKYIV--SASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDN---TIRLWDIECGAC 392 (499)
T ss_pred heeeeccc--cceEE--EecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCc---eEEEEeccccHH
Confidence 89999996 44555 56678899999996 5556666 5667777777 489999999666 999999999999
Q ss_pred EEEeeCCCc--eEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc
Q 013871 274 LGTTRAECS--VTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS 317 (434)
Q Consensus 274 i~~~~~~~~--~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~ 317 (434)
+..+++|.- -++.| |.+.|++|.. ||+|+|||+...
T Consensus 393 LRvLeGHEeLvRciRF--d~krIVSGaY------DGkikvWdl~aa 430 (499)
T KOG0281|consen 393 LRVLEGHEELVRCIRF--DNKRIVSGAY------DGKIKVWDLQAA 430 (499)
T ss_pred HHHHhchHHhhhheee--cCceeeeccc------cceEEEEecccc
Confidence 999999843 33666 6688999999 999999999543
No 128
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.69 E-value=2.6e-14 Score=142.14 Aligned_cols=242 Identities=13% Similarity=0.115 Sum_probs=153.5
Q ss_pred CCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC----CeEEEEeCCCCCCceeeeeecCCeeEEEEeC
Q 013871 25 EKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT----NEIQFFDTTDFPKGILYRLRVPGVAAFEVSK 100 (434)
Q Consensus 25 d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~----~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp 100 (434)
..+|.|||.. |...+.+.... ..+..++|||||+.+++... ..|.+|++..... ............+.|||
T Consensus 183 ~~~l~i~D~~-g~~~~~lt~~~---~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~-~~l~~~~g~~~~~~~Sp 257 (433)
T PRK04922 183 RYALQVADSD-GYNPQTILRSA---EPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQR-ELVASFRGINGAPSFSP 257 (433)
T ss_pred eEEEEEECCC-CCCceEeecCC---CccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCE-EEeccCCCCccCceECC
Confidence 4579999975 44444444332 44558999999999998742 3799999876432 11111112244689999
Q ss_pred CCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEE
Q 013871 101 APGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYL 180 (434)
Q Consensus 101 ~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l 180 (434)
+ +..+++.... .....|.+|++.+ +. +..++.+......+.|+|||+.|++... .. |...||.+
T Consensus 258 D-G~~l~~~~s~--~g~~~Iy~~d~~~---g~-~~~lt~~~~~~~~~~~spDG~~l~f~sd----~~-----g~~~iy~~ 321 (433)
T PRK04922 258 D-GRRLALTLSR--DGNPEIYVMDLGS---RQ-LTRLTNHFGIDTEPTWAPDGKSIYFTSD----RG-----GRPQIYRV 321 (433)
T ss_pred C-CCEEEEEEeC--CCCceEEEEECCC---CC-eEECccCCCCccceEECCCCCEEEEEEC----CC-----CCceEEEE
Confidence 9 4555443222 1235788888865 33 3444444444567899999999877532 11 23358888
Q ss_pred eeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCC-CeEEEEecccceeEEeCC-cCeeEEEECCCCCeEEEEecCC
Q 013871 181 TTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMP-ASATIFNKKCRPILELGS-GPYNTVRWNPKGKFLCLAGFGN 258 (434)
Q Consensus 181 ~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~-~~v~l~d~~~~~~~~~~~-~~~~~i~~SP~g~~l~~~~~~~ 258 (434)
+..+.....+... ......++|||||+.+++...... ..|.+||+.+.....+.. .......|||||++|+......
T Consensus 322 dl~~g~~~~lt~~-g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt~~~~~~~p~~spdG~~i~~~s~~~ 400 (433)
T PRK04922 322 AASGGSAERLTFQ-GNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTLTPGSLDESPSFAPNGSMVLYATREG 400 (433)
T ss_pred ECCCCCeEEeecC-CCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEECCCCCCCCCceECCCCCEEEEEEecC
Confidence 8766544444432 234557899999999998654321 268999987655555532 2345679999999988877544
Q ss_pred CCCeEEEEEccCCEEEEEeeC--CCceEEEECC
Q 013871 259 LPGDMAFWDYVDGKQLGTTRA--ECSVTSEWSP 289 (434)
Q Consensus 259 ~~g~i~iwd~~~~~~i~~~~~--~~~~~~~wsp 289 (434)
..+.|+++|+..+. ...+.. ..+...+|||
T Consensus 401 g~~~L~~~~~~g~~-~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 401 GRGVLAAVSTDGRV-RQRLVSADGEVREPAWSP 432 (433)
T ss_pred CceEEEEEECCCCc-eEEcccCCCCCCCCccCC
Confidence 45679999986543 333322 2455688987
No 129
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.68 E-value=9.2e-14 Score=137.37 Aligned_cols=264 Identities=9% Similarity=0.011 Sum_probs=156.4
Q ss_pred CcEEEEEecCCC-CC---CCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcE--EEEec--C--CeEEEEeCCCC
Q 013871 11 GLIIQTFQKSST-PQ---EKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAV--ACRMA--T--NEIQFFDTTDF 80 (434)
Q Consensus 11 g~~L~t~~~~~~-~~---d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~--la~~~--~--~~i~v~~~~~~ 80 (434)
+++++....... .. ...|.+.|...+. .+.+.... .....++|||||+. ++..+ + .+|.+.++...
T Consensus 146 ~~~iayv~~~~~~~~~~~~~~l~~~d~dG~~-~~~lt~~~---~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g 221 (428)
T PRK01029 146 SGKIIFSLSTTNSDTELKQGELWSVDYDGQN-LRPLTQEH---SLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENP 221 (428)
T ss_pred cCEEEEEEeeCCcccccccceEEEEcCCCCC-ceEcccCC---CCcccceEccCCCceEEEEEEccCCCceEEEEECCCC
Confidence 666665543221 11 3478888866554 34444332 23347899999975 32232 2 37888888764
Q ss_pred CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeec-ccceeEEEECCCCCeEEEE
Q 013871 81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFF-RCSTVQLNWNRGSTGLLAV 159 (434)
Q Consensus 81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~-~~~~~~~~ws~~G~~l~~~ 159 (434)
....... .........|||| +..|++.....+.....+.+|++.... .....+.+.. ........|+|||+.|++.
T Consensus 222 ~~~~lt~-~~g~~~~p~wSPD-G~~Laf~s~~~g~~di~~~~~~~~~g~-~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~ 298 (428)
T PRK01029 222 AGKKILA-LQGNQLMPTFSPR-KKLLAFISDRYGNPDLFIQSFSLETGA-IGKPRRLLNEAFGTQGNPSFSPDGTRLVFV 298 (428)
T ss_pred CceEeec-CCCCccceEECCC-CCEEEEEECCCCCcceeEEEeecccCC-CCcceEeecCCCCCcCCeEECCCCCEEEEE
Confidence 4311111 1223456899999 556665543333333344556665421 1122223222 2234578999999998876
Q ss_pred EEecccccCceeecceeEEEEeeCCc--ceeeeecCCCCCeEEEEECcCCCEEEEEEccC-CCeEEEEecccceeEEeC-
Q 013871 160 AQSDVDKTNQSYYGESKLNYLTTDGT--HEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFM-PASATIFNKKCRPILELG- 235 (434)
Q Consensus 160 ~~~~~d~~~~~~~g~~~l~~l~~~~~--~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~-~~~v~l~d~~~~~~~~~~- 235 (434)
... . |...||.+++.+. ....++ ...+.+....|||||+.++++.... ...|.+||+.+.....+.
T Consensus 299 s~~----~-----g~~~ly~~~~~~~g~~~~~lt-~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~ 368 (428)
T PRK01029 299 SNK----D-----GRPRIYIMQIDPEGQSPRLLT-KKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTT 368 (428)
T ss_pred ECC----C-----CCceEEEEECcccccceEEec-cCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccC
Confidence 422 1 2335777766432 122222 2235677899999999999764332 237999999876666553
Q ss_pred -CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC-CceEEEECCCC
Q 013871 236 -SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-CSVTSEWSPDG 291 (434)
Q Consensus 236 -~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-~~~~~~wspdg 291 (434)
...+....|+|||++|+.....+..+.|+++|+.+++........ .....+|||-.
T Consensus 369 ~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 369 SPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVIGSGEKRFPSWGAFP 426 (428)
T ss_pred CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCcccCceecCCC
Confidence 235567999999999887665444578999999887654444333 34568999854
No 130
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.68 E-value=1.1e-14 Score=132.57 Aligned_cols=262 Identities=14% Similarity=0.190 Sum_probs=173.9
Q ss_pred CcEEEEe-cCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCC-CCceeeee
Q 013871 61 EAVACRM-ATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQ-SQPLARRS 138 (434)
Q Consensus 61 ~~~la~~-~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~-~~~i~~~~ 138 (434)
++++.++ .||.+++|+...... .....|...|.+++|--.+.. -+.|+ +.+.+.++++|....... ...+....
T Consensus 115 ~~~IltgsYDg~~riWd~~Gk~~-~~~~Ght~~ik~v~~v~~n~~-~~~fv--sas~Dqtl~Lw~~~~~~~~~~~~~~~~ 190 (423)
T KOG0313|consen 115 SKWILTGSYDGTSRIWDLKGKSI-KTIVGHTGPIKSVAWVIKNSS-SCLFV--SASMDQTLRLWKWNVGENKVKALKVCR 190 (423)
T ss_pred CceEEEeecCCeeEEEecCCceE-EEEecCCcceeeeEEEecCCc-cceEE--EecCCceEEEEEecCchhhhhHHhHhc
Confidence 6777776 689999999876332 344556667777666543221 11222 235677888888765321 22333444
Q ss_pred ecccceeEEEECCCCCeEEEEEEecccccCceeecc----eeEEEEee-----------CCcceeeeecC-CCCCeEEEE
Q 013871 139 FFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGE----SKLNYLTT-----------DGTHEGLVPLR-KEGPVHDVQ 202 (434)
Q Consensus 139 ~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~----~~l~~l~~-----------~~~~~~~v~l~-~~~~i~~v~ 202 (434)
+|+..+-++.-+++|+.++ +...|.+.+.|.-+ ..+.-... .+.....+.+. +.++|.++.
T Consensus 191 GHk~~V~sVsv~~sgtr~~---SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~ 267 (423)
T KOG0313|consen 191 GHKRSVDSVSVDSSGTRFC---SGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVV 267 (423)
T ss_pred ccccceeEEEecCCCCeEE---eecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEE
Confidence 8999999999999999853 34467776666411 11111111 11222333443 578999999
Q ss_pred ECcCCCEEEEEEccCCCeEEEEeccccee-EE-eCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC---EEEEEe
Q 013871 203 WSYSGSEFAVVYGFMPASATIFNKKCRPI-LE-LGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG---KQLGTT 277 (434)
Q Consensus 203 wspdg~~~av~~g~~~~~v~l~d~~~~~~-~~-~~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~---~~i~~~ 277 (434)
|++.+ .++ +++.|.+|+.||+..... .. ......+++.++|..++|++|+.+ ..|++||.+++ -....+
T Consensus 268 w~d~~-v~y--S~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssd---r~irl~DPR~~~gs~v~~s~ 341 (423)
T KOG0313|consen 268 WSDAT-VIY--SVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSD---RHIRLWDPRTGDGSVVSQSL 341 (423)
T ss_pred EcCCC-ceE--eecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCC---CceeecCCCCCCCceeEEee
Confidence 99833 333 578899999999974433 33 367889999999999999999844 59999998865 234556
Q ss_pred eCC--CceEEEECCCCCEEE-EEEcCCceeeCCcEEEEeecCc--eeeee--ecccceeeEEEcCCCCCCCC
Q 013871 278 RAE--CSVTSEWSPDGRYFM-TATTAPRLQIDNGIKIFHHNGS--LFFKK--MFDKLFQAEWKPVSPDKFGD 342 (434)
Q Consensus 278 ~~~--~~~~~~wspdg~~l~-tas~~prl~~D~~i~iw~~~g~--~~~~~--~~~~~~~~~w~p~~~~~~~~ 342 (434)
.+| .+..+.|+|...+++ +++. ||++++||+... .+|.. +.+.++.+.|.-. ..+.+.
T Consensus 342 ~gH~nwVssvkwsp~~~~~~~S~S~------D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~~-~~IvSG 406 (423)
T KOG0313|consen 342 IGHKNWVSSVKWSPTNEFQLVSGSY------DNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNEG-GLIVSG 406 (423)
T ss_pred ecchhhhhheecCCCCceEEEEEec------CCeEEEEEeccCCCcceeeccCCceEEEEeccCC-ceEEec
Confidence 666 556699999988755 5555 999999999443 56665 5578999999864 344444
No 131
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.68 E-value=9.3e-14 Score=130.65 Aligned_cols=264 Identities=16% Similarity=0.214 Sum_probs=168.4
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCC
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFP 81 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~ 81 (434)
|.|+.|.++|..+ |.. .+++|.||+..+.+..++...+ ..++-++.--.||.+|..+.|..|..|| .+..
T Consensus 249 Vl~v~F~engdvi-TgD-----S~G~i~Iw~~~~~~~~k~~~aH---~ggv~~L~~lr~GtllSGgKDRki~~Wd-~~y~ 318 (626)
T KOG2106|consen 249 VLCVTFLENGDVI-TGD-----SGGNILIWSKGTNRISKQVHAH---DGGVFSLCMLRDGTLLSGGKDRKIILWD-DNYR 318 (626)
T ss_pred EEEEEEcCCCCEE-eec-----CCceEEEEeCCCceEEeEeeec---CCceEEEEEecCccEeecCccceEEecc-cccc
Confidence 7899999999876 544 6899999998666655555443 3666688888999999844567999999 3433
Q ss_pred Cceeeeee--cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEE
Q 013871 82 KGILYRLR--VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAV 159 (434)
Q Consensus 82 ~~~~~~~~--~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~ 159 (434)
+.....+. ...|+.+ .++... +.+-. + .+.|--=.+.+ .-......|..+-..+.-.|+...++.+
T Consensus 319 k~r~~elPe~~G~iRtv--~e~~~d-i~vGT--t---rN~iL~Gt~~~----~f~~~v~gh~delwgla~hps~~q~~T~ 386 (626)
T KOG2106|consen 319 KLRETELPEQFGPIRTV--AEGKGD-ILVGT--T---RNFILQGTLEN----GFTLTVQGHGDELWGLATHPSKNQLLTC 386 (626)
T ss_pred ccccccCchhcCCeeEE--ecCCCc-EEEee--c---cceEEEeeecC----CceEEEEecccceeeEEcCCChhheeec
Confidence 32222222 1234433 233222 11100 0 00111111111 1111122334444556667766654432
Q ss_pred EEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeEEeC--Cc
Q 013871 160 AQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELG--SG 237 (434)
Q Consensus 160 ~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~~~--~~ 237 (434)
..|+....|.. +........+.++.++.|+|.| .+| .|...+...++|.+...+.+++ ..
T Consensus 387 ---gqdk~v~lW~~------------~k~~wt~~~~d~~~~~~fhpsg-~va--~Gt~~G~w~V~d~e~~~lv~~~~d~~ 448 (626)
T KOG2106|consen 387 ---GQDKHVRLWND------------HKLEWTKIIEDPAECADFHPSG-VVA--VGTATGRWFVLDTETQDLVTIHTDNE 448 (626)
T ss_pred ---cCcceEEEccC------------CceeEEEEecCceeEeeccCcc-eEE--EeeccceEEEEecccceeEEEEecCC
Confidence 23444443321 1111111126799999999999 666 4888889999999887766664 78
Q ss_pred CeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC----EEEEEeeCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEe
Q 013871 238 PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG----KQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFH 313 (434)
Q Consensus 238 ~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~----~~i~~~~~~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~ 313 (434)
+++.++|||+|.+||+|+.++ .|+||-+... ..+....+..++.+.||+|++||.+-+. |-.|..|.
T Consensus 449 ~ls~v~ysp~G~~lAvgs~d~---~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~------d~eiLyW~ 519 (626)
T KOG2106|consen 449 QLSVVRYSPDGAFLAVGSHDN---HIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSG------DYEILYWK 519 (626)
T ss_pred ceEEEEEcCCCCEEEEecCCC---eEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccC------ceEEEEEc
Confidence 899999999999999999554 9999987643 3444555556777999999999999998 99999994
Q ss_pred e
Q 013871 314 H 314 (434)
Q Consensus 314 ~ 314 (434)
-
T Consensus 520 ~ 520 (626)
T KOG2106|consen 520 P 520 (626)
T ss_pred c
Confidence 3
No 132
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.68 E-value=1.2e-14 Score=135.11 Aligned_cols=281 Identities=15% Similarity=0.196 Sum_probs=192.9
Q ss_pred cceEEecCCCc-EEEEEecCCCCCCCcEEEEEcCCCc----EEEEEeecCcCCCCCCeeeecCC--CcEEEEecCCeEEE
Q 013871 2 LLLLTCLRVGL-IIQTFQKSSTPQEKNVILWKTETGE----AVYQLFQKNMTKTTWPSIRFSSD--EAVACRMATNEIQF 74 (434)
Q Consensus 2 V~~l~fSP~g~-~L~t~~~~~~~~d~~v~iWd~~~g~----~~~~~~~~~~~~~~~~~~~~S~d--~~~la~~~~~~i~v 74 (434)
|++++|.|..+ -|+..+ +.-++|-+||+.+.+ .+.-|.. |...|.++.|+|. .+++.+..||+|+.
T Consensus 189 it~l~fHPt~~~~lva~G----dK~G~VG~Wn~~~~~~d~d~v~~f~~---hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~ 261 (498)
T KOG4328|consen 189 ITSLAFHPTENRKLVAVG----DKGGQVGLWNFGTQEKDKDGVYLFTP---HSGPVSGLKFSPANTSQIYSSSYDGTIRL 261 (498)
T ss_pred eEEEEecccCcceEEEEc----cCCCcEEEEecCCCCCccCceEEecc---CCccccceEecCCChhheeeeccCceeee
Confidence 78999999876 555444 256899999995322 2344444 3377889999994 46777778999999
Q ss_pred EeCCCCCCceeeeee--cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCC
Q 013871 75 FDTTDFPKGILYRLR--VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRG 152 (434)
Q Consensus 75 ~~~~~~~~~~~~~~~--~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~ 152 (434)
-|.+......+..+. ...+.++.++......+. .+.-+...+|++... +.....+..|+..++.+..||.
T Consensus 262 ~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~------~~~~G~f~~iD~R~~--~s~~~~~~lh~kKI~sv~~NP~ 333 (498)
T KOG4328|consen 262 QDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLF------GDNVGNFNVIDLRTD--GSEYENLRLHKKKITSVALNPV 333 (498)
T ss_pred eeecchhhHHHhhcCccceeeeeccccCCCccEEE------eecccceEEEEeecC--CccchhhhhhhcccceeecCCC
Confidence 998764332333342 224556666666333322 123347788998764 5667777788889999999999
Q ss_pred CCeEEEEEEecccccCceeecceeEEEEeeCCccee--eeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc--
Q 013871 153 STGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEG--LVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-- 228 (434)
Q Consensus 153 G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~--~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~-- 228 (434)
-.++++.+ ..|.+.+ ||.+.-.+.... .-.+++.-.|+++.|||+|-.++ +.+.|..|+|||..+
T Consensus 334 ~p~~laT~--s~D~T~k-------IWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~--TT~~D~~IRv~dss~~s 402 (498)
T KOG4328|consen 334 CPWFLATA--SLDQTAK-------IWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLL--TTCQDNEIRVFDSSCIS 402 (498)
T ss_pred Cchheeec--ccCccee-------eeehhhhcCCCCcceecccccceeeeeEEcCCCCceE--eeccCCceEEeeccccc
Confidence 88875543 4566665 444443343332 44567788999999999988855 567789999999852
Q ss_pred ---ceeEEe-CCc---C---eeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCc---eE-EEECCCCCEE
Q 013871 229 ---RPILEL-GSG---P---YNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECS---VT-SEWSPDGRYF 294 (434)
Q Consensus 229 ---~~~~~~-~~~---~---~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~---~~-~~wspdg~~l 294 (434)
.+...+ |.. . .-...|.|+..+|++|. ....|.|+|-+.++.+..+..+.. .. .+|+|-+..+
T Consensus 403 a~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~---~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~ 479 (498)
T KOG4328|consen 403 AKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGR---YPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTL 479 (498)
T ss_pred ccCCccceeeccCcccccccchhheeCCCccEEEEec---cCcceeEEcCCCCEEeeeccCccccccccceeecccccce
Confidence 222222 211 1 12478999999999988 445899999999998888766533 22 8999999988
Q ss_pred EEEEcCCceeeCCcEEEEeecC
Q 013871 295 MTATTAPRLQIDNGIKIFHHNG 316 (434)
Q Consensus 295 ~tas~~prl~~D~~i~iw~~~g 316 (434)
++|+.+ .+.|.||.-.+
T Consensus 480 ~aG~~s-----~Gki~vft~k~ 496 (498)
T KOG4328|consen 480 AAGGNS-----SGKIYVFTNKK 496 (498)
T ss_pred eccCCc-----cceEEEEecCC
Confidence 888875 77788776543
No 133
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=5.6e-16 Score=158.30 Aligned_cols=283 Identities=16% Similarity=0.265 Sum_probs=193.3
Q ss_pred eEEecCCCc-EEEEEecC---CC--CCCCcEEEEEcC--CCc----EEEEEeecCcCCCCCCeeeecCCCcE----EEEe
Q 013871 4 LLTCLRVGL-IIQTFQKS---ST--PQEKNVILWKTE--TGE----AVYQLFQKNMTKTTWPSIRFSSDEAV----ACRM 67 (434)
Q Consensus 4 ~l~fSP~g~-~L~t~~~~---~~--~~d~~v~iWd~~--~g~----~~~~~~~~~~~~~~~~~~~~S~d~~~----la~~ 67 (434)
.++|||++. +|+++... .. ..+.++-||.+. +.+ .+.++.. ...+..++|++.+.. +|.+
T Consensus 11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~s----~~rF~kL~W~~~g~~~~GlIaGG 86 (1049)
T KOG0307|consen 11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQS----SNRFNKLAWGSYGSHSHGLIAGG 86 (1049)
T ss_pred eEEecCCCchhhHHHhhhhccccccccccccceeeecccCccccccccccccc----cccceeeeecccCCCccceeecc
Confidence 468999997 66654421 11 235667777653 332 2333322 256678999987665 6666
Q ss_pred -cCCeEEEEeCCCCC------CceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceee-eee
Q 013871 68 -ATNEIQFFDTTDFP------KGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLAR-RSF 139 (434)
Q Consensus 68 -~~~~i~v~~~~~~~------~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~-~~~ 139 (434)
.||.|.+|+..... .......|...|..+.|.+..++.+| +++..+.|.|||+.+. ..+..- ...
T Consensus 87 ~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLA-----SGa~~geI~iWDlnn~--~tP~~~~~~~ 159 (1049)
T KOG0307|consen 87 LEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLA-----SGADDGEILIWDLNKP--ETPFTPGSQA 159 (1049)
T ss_pred ccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceee-----ccCCCCcEEEeccCCc--CCCCCCCCCC
Confidence 57899999986531 11223445667999999999777887 5778899999999874 232222 222
Q ss_pred cccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCC---CCCeEEEEECcCCC-EEEEEEc
Q 013871 140 FRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK---EGPVHDVQWSYSGS-EFAVVYG 215 (434)
Q Consensus 140 ~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~---~~~i~~v~wspdg~-~~av~~g 215 (434)
...++..++||..-.+|+..++.. |...+|.+. .. ...+.+.. ...++.++|+|+.. ++++.++
T Consensus 160 ~~~eI~~lsWNrkvqhILAS~s~s---------g~~~iWDlr--~~-~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~ 227 (1049)
T KOG0307|consen 160 PPSEIKCLSWNRKVSHILASGSPS---------GRAVIWDLR--KK-KPIIKLSDTPGRMHCSVLAWHPDHATQLLVASG 227 (1049)
T ss_pred CcccceEeccchhhhHHhhccCCC---------CCceecccc--CC-CcccccccCCCccceeeeeeCCCCceeeeeecC
Confidence 556888999999988886543221 333455553 22 34444443 24488999999875 5555444
Q ss_pred cCCC--eEEEEecc--ccee--EEeCCcCeeEEEECCCC-CeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEE
Q 013871 216 FMPA--SATIFNKK--CRPI--LELGSGPYNTVRWNPKG-KFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSE 286 (434)
Q Consensus 216 ~~~~--~v~l~d~~--~~~~--~~~~~~~~~~i~~SP~g-~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~ 286 (434)
+ |+ .|.+||+| ..++ .+.|...+.++.|++.+ ++|+++| .|+.|.+|+.++++.+..+... +...+.
T Consensus 228 d-d~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsg---kD~~ii~wN~~tgEvl~~~p~~~nW~fdv~ 303 (1049)
T KOG0307|consen 228 D-DSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSG---KDNRIICWNPNTGEVLGELPAQGNWCFDVQ 303 (1049)
T ss_pred C-CCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhccc---CCCCeeEecCCCceEeeecCCCCcceeeee
Confidence 3 43 89999987 3333 34588999999999988 7888888 4559999999999999998764 556699
Q ss_pred ECCCCCEEEEEEcCCceeeCCcEEEEeecCce
Q 013871 287 WSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL 318 (434)
Q Consensus 287 wspdg~~l~tas~~prl~~D~~i~iw~~~g~~ 318 (434)
|+|..-.++++.+. ||.|-|+.+.|..
T Consensus 304 w~pr~P~~~A~asf-----dgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 304 WCPRNPSVMAAASF-----DGKISIYSLQGTD 330 (1049)
T ss_pred ecCCCcchhhhhee-----ccceeeeeeecCC
Confidence 99998855555443 9999999997764
No 134
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.67 E-value=4.1e-14 Score=140.39 Aligned_cols=241 Identities=15% Similarity=0.160 Sum_probs=151.4
Q ss_pred eEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEEC
Q 013871 71 EIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWN 150 (434)
Q Consensus 71 ~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws 150 (434)
+|.++|...... .........+.++.|||+ +..+++...+ .....|.+|++.. ++. .....+........|+
T Consensus 177 ~L~~~D~dG~~~-~~l~~~~~~v~~p~wSPD-G~~la~~s~~--~~~~~I~~~dl~~---g~~-~~l~~~~g~~~~~~~S 248 (427)
T PRK02889 177 QLQISDADGQNA-QSALSSPEPIISPAWSPD-GTKLAYVSFE--SKKPVVYVHDLAT---GRR-RVVANFKGSNSAPAWS 248 (427)
T ss_pred EEEEECCCCCCc-eEeccCCCCcccceEcCC-CCEEEEEEcc--CCCcEEEEEECCC---CCE-EEeecCCCCccceEEC
Confidence 677777654321 222223446788999999 5666554332 2234689999876 333 2333344455678999
Q ss_pred CCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCC--eEEEEeccc
Q 013871 151 RGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPA--SATIFNKKC 228 (434)
Q Consensus 151 ~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~--~v~l~d~~~ 228 (434)
|||+.|++..+.+ |...||.++..+.....+. ...+.+.+..|+|||+++++.+ ...+ .+.++|+.+
T Consensus 249 PDG~~la~~~~~~---------g~~~Iy~~d~~~~~~~~lt-~~~~~~~~~~wSpDG~~l~f~s-~~~g~~~Iy~~~~~~ 317 (427)
T PRK02889 249 PDGRTLAVALSRD---------GNSQIYTVNADGSGLRRLT-QSSGIDTEPFFSPDGRSIYFTS-DRGGAPQIYRMPASG 317 (427)
T ss_pred CCCCEEEEEEccC---------CCceEEEEECCCCCcEECC-CCCCCCcCeEEcCCCCEEEEEe-cCCCCcEEEEEECCC
Confidence 9999987754321 3346888877665333322 2234556789999999998753 3334 444445544
Q ss_pred ceeE--EeCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceEEEECCCCCEEEEEEcCCceeeC
Q 013871 229 RPIL--ELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQID 306 (434)
Q Consensus 229 ~~~~--~~~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~~~wspdg~~l~tas~~prl~~D 306 (434)
.... .++........|||||++|+..+..+....|++||+.+++..............|+|||++|+.++.. .
T Consensus 318 g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~~~~~~p~~spdg~~l~~~~~~-----~ 392 (427)
T PRK02889 318 GAAQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTDTTRDESPSFAPNGRYILYATQQ-----G 392 (427)
T ss_pred CceEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccCCCCccCceECCCCCEEEEEEec-----C
Confidence 3322 23333344689999999999876443334799999988765443333334458999999999999873 2
Q ss_pred C--cEEEEeecCceeeee--ecccceeeEEEcC
Q 013871 307 N--GIKIFHHNGSLFFKK--MFDKLFQAEWKPV 335 (434)
Q Consensus 307 ~--~i~iw~~~g~~~~~~--~~~~~~~~~w~p~ 335 (434)
+ .+.+-+.+|...... +..++...+|.|.
T Consensus 393 g~~~l~~~~~~g~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 393 GRSVLAAVSSDGRIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred CCEEEEEEECCCCceEEeecCCCCCCCCccCCC
Confidence 2 245556678765544 3357788888875
No 135
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.67 E-value=6.2e-14 Score=138.97 Aligned_cols=109 Identities=17% Similarity=0.373 Sum_probs=90.3
Q ss_pred CCCeEEEEECcCCCEEEEEEccCCCeEEEEeccccee-EEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC
Q 013871 195 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPI-LEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG 271 (434)
Q Consensus 195 ~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~-~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~ 271 (434)
..++..+..+.....|++ +..+-.|.++|..+..+ ..| |...+|++.|||||++|++++ +|++|++||+-++
T Consensus 534 ~~~~~~iv~hr~s~l~a~--~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisas---mD~tIr~wDlpt~ 608 (910)
T KOG1539|consen 534 GSSITGIVYHRVSDLLAI--ALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISAS---MDSTIRTWDLPTG 608 (910)
T ss_pred CCCcceeeeeehhhhhhh--hcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEee---cCCcEEEEeccCc
Confidence 567777888877777775 45567999999976543 444 789999999999999999999 7779999999999
Q ss_pred EEEEEeeCC-CceEEEECCCCCEEEEEEcCCceeeCCcEEEEe
Q 013871 272 KQLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFH 313 (434)
Q Consensus 272 ~~i~~~~~~-~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~ 313 (434)
.+|-.+.-. ..+.+.+||.|.+|||+..+ .++|.+|.
T Consensus 609 ~lID~~~vd~~~~sls~SPngD~LAT~Hvd-----~~gIylWs 646 (910)
T KOG1539|consen 609 TLIDGLLVDSPCTSLSFSPNGDFLATVHVD-----QNGIYLWS 646 (910)
T ss_pred ceeeeEecCCcceeeEECCCCCEEEEEEec-----CceEEEEE
Confidence 999877655 44569999999999999982 39999997
No 136
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.67 E-value=3.2e-15 Score=146.83 Aligned_cols=263 Identities=14% Similarity=0.230 Sum_probs=177.9
Q ss_pred eeeecCCCcEEEEecCCeEEEEeCCCCCCceeeeeec-------CCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcC
Q 013871 54 SIRFSSDEAVACRMATNEIQFFDTTDFPKGILYRLRV-------PGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACG 126 (434)
Q Consensus 54 ~~~~S~d~~~la~~~~~~i~v~~~~~~~~~~~~~~~~-------~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~ 126 (434)
.+.-.+|-..++.++...+.+|.++.........+.. -.+.++.|+.-..+.||+. ...+.|.+|++.
T Consensus 44 AIs~nr~~~qiv~AGrs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~-----s~nG~i~vWdln 118 (839)
T KOG0269|consen 44 AISVNRDINQIVVAGRSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATC-----STNGVISVWDLN 118 (839)
T ss_pred eEeecCCcceeEEecccceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheee-----cCCCcEEEEecC
Confidence 5667788888888888888999876533211111111 1245667775445666654 344689999996
Q ss_pred CCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECc-
Q 013871 127 KDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSY- 205 (434)
Q Consensus 127 ~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wsp- 205 (434)
.......+....-|...+.++.|++....+++..+ .|.+.+ +|.+...... .........|.+|+|+|
T Consensus 119 k~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGS--QDg~vK-------~~DlR~~~S~--~t~~~nSESiRDV~fsp~ 187 (839)
T KOG0269|consen 119 KSIRNKLLTVFNEHERSANKLDFHSTEPNILISGS--QDGTVK-------CWDLRSKKSK--STFRSNSESIRDVKFSPG 187 (839)
T ss_pred ccccchhhhHhhhhccceeeeeeccCCccEEEecC--CCceEE-------EEeeeccccc--ccccccchhhhceeeccC
Confidence 53223333444556777889999999888877543 445555 4444333221 11112357899999999
Q ss_pred CCCEEEEEEccCCCeEEEEeccc----ceeEEeCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC--EEEEEeeC
Q 013871 206 SGSEFAVVYGFMPASATIFNKKC----RPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG--KQLGTTRA 279 (434)
Q Consensus 206 dg~~~av~~g~~~~~v~l~d~~~----~~~~~~~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~--~~i~~~~~ 279 (434)
.+.+|+ ++...|.+.+||++. ...+..|.+++.|+.|+|++.+||+||.| ++|+|||..+. +.+.+++.
T Consensus 188 ~~~~F~--s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRD---K~vkiWd~t~~~~~~~~tInT 262 (839)
T KOG0269|consen 188 YGNKFA--SIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRD---KMVKIWDMTDSRAKPKHTINT 262 (839)
T ss_pred CCceEE--EecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCC---ccEEEEeccCCCccceeEEee
Confidence 466777 678889999999973 33334499999999999999999999944 69999998855 34555544
Q ss_pred C-CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCce----eeeeecccceeeEEEcCCCCCC
Q 013871 280 E-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL----FFKKMFDKLFQAEWKPVSPDKF 340 (434)
Q Consensus 280 ~-~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~----~~~~~~~~~~~~~w~p~~~~~~ 340 (434)
. .+..+.|-|+-++.+..++ +-+|-.|+|||+.-.- .+..+.+.+..++|+-..+.++
T Consensus 263 iapv~rVkWRP~~~~hLAtcs---mv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l 325 (839)
T KOG0269|consen 263 IAPVGRVKWRPARSYHLATCS---MVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINL 325 (839)
T ss_pred cceeeeeeeccCccchhhhhh---ccccceEEEEeeccccccceeeeccCccccceeccCCCceee
Confidence 3 4455999999887555443 3458899999997653 3445667788888987555444
No 137
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.67 E-value=3.6e-14 Score=134.82 Aligned_cols=308 Identities=15% Similarity=0.222 Sum_probs=195.3
Q ss_pred ceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC------------C
Q 013871 3 LLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT------------N 70 (434)
Q Consensus 3 ~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~------------~ 70 (434)
+-+.|||.|+||+|.. -.-|.+|--.+-..++.|.+ ..+..+.|||.++||++-+- .
T Consensus 214 tyv~wSP~GTYL~t~H------k~GI~lWGG~~f~r~~RF~H-----p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~ 282 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFH------KQGIALWGGESFDRIQRFYH-----PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQ 282 (698)
T ss_pred eeEEecCCceEEEEEe------ccceeeecCccHHHHHhccC-----CCceeeecCCccceEEEecCCccccCcccCCCc
Confidence 3578999999999988 24599997666666777766 34557899999999998421 4
Q ss_pred eEEEEeCCCCCCceeeee---ecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEE
Q 013871 71 EIQFFDTTDFPKGILYRL---RVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQL 147 (434)
Q Consensus 71 ~i~v~~~~~~~~~~~~~~---~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~ 147 (434)
.|.|||+.++........ ....-.-+.||-+ +.++|.... ..|.||+.+. -..+-.++.--..+..+
T Consensus 283 ~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~D-dKy~Arm~~------~sisIyEtps---f~lld~Kslki~gIr~F 352 (698)
T KOG2314|consen 283 QLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHD-DKYFARMTG------NSISIYETPS---FMLLDKKSLKISGIRDF 352 (698)
T ss_pred eEEEEEccccchhcceeccCCCccccceEEeccC-CceeEEecc------ceEEEEecCc---eeeecccccCCccccCc
Confidence 899999988654332222 1122345789988 677776433 4688898887 33444444445567789
Q ss_pred EECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeee-ecCCCCCeEEEEECcCCCEEEEEEccCC--------
Q 013871 148 NWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLV-PLRKEGPVHDVQWSYSGSEFAVVYGFMP-------- 218 (434)
Q Consensus 148 ~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v-~l~~~~~i~~v~wspdg~~~av~~g~~~-------- 218 (434)
.|+|.++.|++-+ .+.+.... .+-++.+.....-+. .|- .-.-..+-|-.+|.+||+-.....
T Consensus 353 swsP~~~llAYwt-pe~~~~pa------rvtL~evPs~~~iRt~nlf-nVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f 424 (698)
T KOG2314|consen 353 SWSPTSNLLAYWT-PETNNIPA------RVTLMEVPSKREIRTKNLF-NVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQF 424 (698)
T ss_pred ccCCCcceEEEEc-ccccCCcc------eEEEEecCccceeeeccce-eeeccEEEeccCCcEEEEEEEeeccccccceE
Confidence 9999988766543 22222111 122333333221111 110 001124678899999998432211
Q ss_pred CeEEEEeccc--ceeEEe-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccC-C---EEEEEeeCCCceEEEECCCC
Q 013871 219 ASATIFNKKC--RPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD-G---KQLGTTRAECSVTSEWSPDG 291 (434)
Q Consensus 219 ~~v~l~d~~~--~~~~~~-~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~-~---~~i~~~~~~~~~~~~wspdg 291 (434)
..+.||.++- -++-.. -...+...+|-|.|..+++-.......++.+|-+++ . +++..+.......+.|||.|
T Consensus 425 ~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG 504 (698)
T KOG2314|consen 425 SNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKG 504 (698)
T ss_pred eeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCC
Confidence 1344555542 222223 256788899999998776654333467899998873 2 45666665566679999999
Q ss_pred CEEEEEEcCCceeeCCcEEEEeecCcee---eeeecccceeeEEEcCCCCCCCC
Q 013871 292 RYFMTATTAPRLQIDNGIKIFHHNGSLF---FKKMFDKLFQAEWKPVSPDKFGD 342 (434)
Q Consensus 292 ~~l~tas~~prl~~D~~i~iw~~~g~~~---~~~~~~~~~~~~w~p~~~~~~~~ 342 (434)
++++.|+... ..+.+..+|.+-..+ ..........+.|.|.+.++...
T Consensus 505 ~fvvva~l~s---~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ 555 (698)
T KOG2314|consen 505 RFVVVAALVS---RRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTS 555 (698)
T ss_pred cEEEEEEecc---cccceEEEecchhhhhhccCccccccccceECCCCCEEEEe
Confidence 9999988733 267888888864222 22233357789999999887765
No 138
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.67 E-value=1.1e-14 Score=132.42 Aligned_cols=229 Identities=13% Similarity=0.273 Sum_probs=151.7
Q ss_pred EEecC--CCcEEEEEecCCCCCCCcEEEEEcCC----------------CcEEEEEeecCcCCCCCCeeeecC--CCcEE
Q 013871 5 LTCLR--VGLIIQTFQKSSTPQEKNVILWKTET----------------GEAVYQLFQKNMTKTTWPSIRFSS--DEAVA 64 (434)
Q Consensus 5 l~fSP--~g~~L~t~~~~~~~~d~~v~iWd~~~----------------g~~~~~~~~~~~~~~~~~~~~~S~--d~~~l 64 (434)
+.-++ +..++++|+ +.+.|.||++.. .+++.++..+.. .++ .+.||| .|. |
T Consensus 157 vr~~~~~~~~~~asws-----e~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~--EGy-~LdWSp~~~g~-L 227 (440)
T KOG0302|consen 157 VRVSRLGNEVLCASWS-----ENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKG--EGY-GLDWSPIKTGR-L 227 (440)
T ss_pred eeecccCCcceeeeec-----ccCcEEEEEchhhhhhhcCccccccccccCceEEecccCc--cce-eeecccccccc-c
Confidence 34444 446888898 789999999832 234666666543 677 899999 333 3
Q ss_pred EEe-cCCeEEEEeCCCCCCc---eeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeec
Q 013871 65 CRM-ATNEIQFFDTTDFPKG---ILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFF 140 (434)
Q Consensus 65 a~~-~~~~i~v~~~~~~~~~---~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~ 140 (434)
+++ ..+.|++|...+..-. .....|...|.++.|||.....++ +.+.++.|+||++... .
T Consensus 228 lsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfa-----ScS~DgsIrIWDiRs~---~-------- 291 (440)
T KOG0302|consen 228 LSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFA-----SCSCDGSIRIWDIRSG---P-------- 291 (440)
T ss_pred ccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEE-----eeecCceEEEEEecCC---C--------
Confidence 334 3469999998763311 122345667889999998777666 3567789999998762 1
Q ss_pred ccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCe
Q 013871 141 RCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPAS 220 (434)
Q Consensus 141 ~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~ 220 (434)
....+ ++ .. +++.|+.+.|+..-..|| +|..+|.
T Consensus 292 -----------~~~~~--~~-----------------------kA--------h~sDVNVISWnr~~~lLa--sG~DdGt 325 (440)
T KOG0302|consen 292 -----------KKAAV--ST-----------------------KA--------HNSDVNVISWNRREPLLA--SGGDDGT 325 (440)
T ss_pred -----------cccee--Ee-----------------------ec--------cCCceeeEEccCCcceee--ecCCCce
Confidence 11111 10 11 156788899987777555 7999999
Q ss_pred EEEEeccc----cee--EEeCCcCeeEEEECCCCC-eEEEEecCCCCCeEEEEEccCC-------------------EEE
Q 013871 221 ATIFNKKC----RPI--LELGSGPYNTVRWNPKGK-FLCLAGFGNLPGDMAFWDYVDG-------------------KQL 274 (434)
Q Consensus 221 v~l~d~~~----~~~--~~~~~~~~~~i~~SP~g~-~l~~~~~~~~~g~i~iwd~~~~-------------------~~i 274 (434)
+.|||++. .++ +.+|+.+|++|.|+|+.. .|+++|.|+ +|.|||+.-- +++
T Consensus 326 ~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~---QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLL 402 (440)
T KOG0302|consen 326 LSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDN---QITIWDLSVEADEEEIDQEAAEGLQDLPPQLL 402 (440)
T ss_pred EEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCC---cEEEEEeeccCChhhhccccccchhcCCceeE
Confidence 99999973 333 455999999999999875 666666554 9999998621 122
Q ss_pred EEeeCC-CceEEEECCCCCEEEEEEcCCceeeCCcEEEEe
Q 013871 275 GTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFH 313 (434)
Q Consensus 275 ~~~~~~-~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~ 313 (434)
...++. .+-.+.|++.-.-++..+. -.++.||.
T Consensus 403 FVHqGQke~KevhWH~QiPG~lvsTa------~dGfnVfk 436 (440)
T KOG0302|consen 403 FVHQGQKEVKEVHWHRQIPGLLVSTA------IDGFNVFK 436 (440)
T ss_pred EEecchhHhhhheeccCCCCeEEEec------ccceeEEE
Confidence 233333 3344899998766666665 44566664
No 139
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.67 E-value=2.6e-15 Score=139.47 Aligned_cols=239 Identities=21% Similarity=0.279 Sum_probs=159.0
Q ss_pred CeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCC-------CCceeeeeecccceeEEEECCCCCeEEEEEEecc
Q 013871 92 GVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQ-------SQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDV 164 (434)
Q Consensus 92 ~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~-------~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~ 164 (434)
.|..+..-|....+||. +...+.|.||++..... ..+-..+.+|..+-..+.||+.-...++. ...
T Consensus 126 EVnRaRymPQnp~iVAt-----~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls--~~~ 198 (422)
T KOG0264|consen 126 EVNRARYMPQNPNIVAT-----KTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLS--GSD 198 (422)
T ss_pred cchhhhhCCCCCcEEEe-----cCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEee--ccC
Confidence 35555666665556663 44556899999875421 12223667777777889999987655443 334
Q ss_pred cccCceeecceeEEEEeeCCcce-----eeeecCCCCCeEEEEECcCCC-EEEEEEccCCCeEEEEeccc--ce---eEE
Q 013871 165 DKTNQSYYGESKLNYLTTDGTHE-----GLVPLRKEGPVHDVQWSYSGS-EFAVVYGFMPASATIFNKKC--RP---ILE 233 (434)
Q Consensus 165 d~~~~~~~g~~~l~~l~~~~~~~-----~~v~l~~~~~i~~v~wspdg~-~~av~~g~~~~~v~l~d~~~--~~---~~~ 233 (434)
|.++. +|.+...+... ..+--.++..|.+++|+|-.. .|+ +...++.+.|||++. .. ...
T Consensus 199 d~~i~-------lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~--sv~dd~~L~iwD~R~~~~~~~~~~~ 269 (422)
T KOG0264|consen 199 DHTIC-------LWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFG--SVGDDGKLMIWDTRSNTSKPSHSVK 269 (422)
T ss_pred CCcEE-------EEeccccccCCccccceEEeecCCcceehhhccccchhhhe--eecCCCeEEEEEcCCCCCCCccccc
Confidence 44444 44444333211 111123578999999999654 455 455688999999984 22 223
Q ss_pred eCCcCeeEEEECCCCCe-EEEEecCCCCCeEEEEEccCC-EEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcE
Q 013871 234 LGSGPYNTVRWNPKGKF-LCLAGFGNLPGDMAFWDYVDG-KQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGI 309 (434)
Q Consensus 234 ~~~~~~~~i~~SP~g~~-l~~~~~~~~~g~i~iwd~~~~-~~i~~~~~~--~~~~~~wspdg~~l~tas~~prl~~D~~i 309 (434)
-|.++++|++|+|.+.+ ||+|+ .|++|.+||+++. +.+.++.+| .+..+.|||+-..++..+.. |+.+
T Consensus 270 ah~~~vn~~~fnp~~~~ilAT~S---~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~-----D~rl 341 (422)
T KOG0264|consen 270 AHSAEVNCVAFNPFNEFILATGS---ADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGT-----DRRL 341 (422)
T ss_pred ccCCceeEEEeCCCCCceEEecc---CCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEeccc-----CCcE
Confidence 37899999999998875 55555 5679999999987 577888887 66679999997765554443 9999
Q ss_pred EEEeecC--c-------------e--eeeeecccceeeEEEcCCCCCCCCchhhhhccCccccccc
Q 013871 310 KIFHHNG--S-------------L--FFKKMFDKLFQAEWKPVSPDKFGDISELIKSVGSLKVAET 358 (434)
Q Consensus 310 ~iw~~~g--~-------------~--~~~~~~~~~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~ 358 (434)
.|||++. + + ++..+...+.++.|+|..|.++..-.+ -..++|+.+
T Consensus 342 ~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~Svae----DN~LqIW~~ 403 (422)
T KOG0264|consen 342 NVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAE----DNILQIWQM 403 (422)
T ss_pred EEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecC----CceEEEeec
Confidence 9999932 1 2 233466789999999999988765321 133556554
No 140
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=1.6e-14 Score=143.73 Aligned_cols=256 Identities=11% Similarity=0.096 Sum_probs=191.5
Q ss_pred CCCCeeeecCCCcEEEEe-cCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCC
Q 013871 50 TTWPSIRFSSDEAVACRM-ATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKD 128 (434)
Q Consensus 50 ~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~ 128 (434)
..+..++|.|.--++.++ .++.|++||..=........-|...|+.+.|+|.. +++. ++|.+-.|++|++.+
T Consensus 10 sRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~q-plFV-----SGGDDykIkVWnYk~- 82 (1202)
T KOG0292|consen 10 SRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQ-PLFV-----SGGDDYKIKVWNYKT- 82 (1202)
T ss_pred ccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCC-CeEE-----ecCCccEEEEEeccc-
Confidence 455578999988877776 78999999975433333444566679999999984 4332 468888999999988
Q ss_pred CCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCC
Q 013871 129 LQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGS 208 (434)
Q Consensus 129 ~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~ 208 (434)
.+.+.++..|-..+..+.|++.=-+|+. ...|++++.|.- ......-+...+.-.|.+.+|+|...
T Consensus 83 --rrclftL~GHlDYVRt~~FHheyPWIlS---ASDDQTIrIWNw---------qsr~~iavltGHnHYVMcAqFhptED 148 (1202)
T KOG0292|consen 83 --RRCLFTLLGHLDYVRTVFFHHEYPWILS---ASDDQTIRIWNW---------QSRKCIAVLTGHNHYVMCAQFHPTED 148 (1202)
T ss_pred --ceehhhhccccceeEEeeccCCCceEEE---ccCCCeEEEEec---------cCCceEEEEecCceEEEeeccCCccc
Confidence 8999999999999999999998777654 336777775532 11111122223467889999999877
Q ss_pred EEEEEEccCCCeEEEEecccc----------------------------eeE----EeCCcCeeEEEECCCCCeEEEEec
Q 013871 209 EFAVVYGFMPASATIFNKKCR----------------------------PIL----ELGSGPYNTVRWNPKGKFLCLAGF 256 (434)
Q Consensus 209 ~~av~~g~~~~~v~l~d~~~~----------------------------~~~----~~~~~~~~~i~~SP~g~~l~~~~~ 256 (434)
.++ +++-|.+|++||+.+- .+. +-|...||-++|+|.--+|++|+
T Consensus 149 lIV--SaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~- 225 (1202)
T KOG0292|consen 149 LIV--SASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGA- 225 (1202)
T ss_pred eEE--EecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecC-
Confidence 776 7888999999996310 011 12677899999999999999998
Q ss_pred CCCCCeEEEEEccCCE--EEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCce---eeeeeccccee
Q 013871 257 GNLPGDMAFWDYVDGK--QLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL---FFKKMFDKLFQ 329 (434)
Q Consensus 257 ~~~~g~i~iwd~~~~~--~i~~~~~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~---~~~~~~~~~~~ 329 (434)
.|..|++|-++.-+ .+-+..+| +++++-|+|....|++.+. |.+|+|||++.+. .+....+++|.
T Consensus 226 --DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsE------DksirVwDm~kRt~v~tfrrendRFW~ 297 (1202)
T KOG0292|consen 226 --DDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSE------DKSIRVWDMTKRTSVQTFRRENDRFWI 297 (1202)
T ss_pred --CcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCC------CccEEEEecccccceeeeeccCCeEEE
Confidence 44599999877543 34455566 7788999999999999999 9999999997653 34446678999
Q ss_pred eEEEcCCC
Q 013871 330 AEWKPVSP 337 (434)
Q Consensus 330 ~~w~p~~~ 337 (434)
++=+|.-.
T Consensus 298 laahP~lN 305 (1202)
T KOG0292|consen 298 LAAHPELN 305 (1202)
T ss_pred EEecCCcc
Confidence 99998753
No 141
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.67 E-value=2.1e-15 Score=141.46 Aligned_cols=232 Identities=12% Similarity=0.161 Sum_probs=171.3
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCC
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDF 80 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~ 80 (434)
|+++.++|||+.|++.+ +-.+|.|||+..-..-............. .++.|||.+++.++ .|+.|.|||+.+-
T Consensus 468 iRSckL~pdgrtLivGG-----eastlsiWDLAapTprikaeltssapaCy-ALa~spDakvcFsccsdGnI~vwDLhnq 541 (705)
T KOG0639|consen 468 IRSCKLLPDGRTLIVGG-----EASTLSIWDLAAPTPRIKAELTSSAPACY-ALAISPDAKVCFSCCSDGNIAVWDLHNQ 541 (705)
T ss_pred eeeeEecCCCceEEecc-----ccceeeeeeccCCCcchhhhcCCcchhhh-hhhcCCccceeeeeccCCcEEEEEcccc
Confidence 67889999999999988 67899999997654321111111011233 68899999977665 7899999999987
Q ss_pred CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEE
Q 013871 81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVA 160 (434)
Q Consensus 81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~ 160 (434)
......+.+.+++.++.+|+++-. + | ++|.++.||-||+.. +..+.+.. |...+.++...|.|.+|++.-
T Consensus 542 ~~VrqfqGhtDGascIdis~dGtk-l--W---TGGlDntvRcWDlre---grqlqqhd-F~SQIfSLg~cP~~dWlavGM 611 (705)
T KOG0639|consen 542 TLVRQFQGHTDGASCIDISKDGTK-L--W---TGGLDNTVRCWDLRE---GRQLQQHD-FSSQIFSLGYCPTGDWLAVGM 611 (705)
T ss_pred eeeecccCCCCCceeEEecCCCce-e--e---cCCCccceeehhhhh---hhhhhhhh-hhhhheecccCCCccceeeec
Confidence 666667788899999999998533 2 2 478899999999987 55554443 456778889999999998753
Q ss_pred EecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-cceeEEe-CCcC
Q 013871 161 QSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL-GSGP 238 (434)
Q Consensus 161 ~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~-~~~~~~~-~~~~ 238 (434)
.. .+++.+.+.+.. ....-.++..|.++.|++-|++|+ +..+|.-+..|..- +..+++. +...
T Consensus 612 en------------s~vevlh~skp~-kyqlhlheScVLSlKFa~cGkwfv--StGkDnlLnawrtPyGasiFqskE~Ss 676 (705)
T KOG0639|consen 612 EN------------SNVEVLHTSKPE-KYQLHLHESCVLSLKFAYCGKWFV--STGKDNLLNAWRTPYGASIFQSKESSS 676 (705)
T ss_pred cc------------CcEEEEecCCcc-ceeecccccEEEEEEecccCceee--ecCchhhhhhccCccccceeeccccCc
Confidence 21 124566655543 222223588999999999999999 56788888888774 5556665 6789
Q ss_pred eeEEEECCCCCeEEEEecCCCCCeEEEEE
Q 013871 239 YNTVRWNPKGKFLCLAGFGNLPGDMAFWD 267 (434)
Q Consensus 239 ~~~i~~SP~g~~l~~~~~~~~~g~i~iwd 267 (434)
|.++..|-|.+||++|+.+. ...||.
T Consensus 677 VlsCDIS~ddkyIVTGSGdk---kATVYe 702 (705)
T KOG0639|consen 677 VLSCDISFDDKYIVTGSGDK---KATVYE 702 (705)
T ss_pred ceeeeeccCceEEEecCCCc---ceEEEE
Confidence 99999999999999988543 555554
No 142
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=1e-14 Score=129.73 Aligned_cols=260 Identities=14% Similarity=0.192 Sum_probs=181.0
Q ss_pred CCeeeecCCCcEEEEe-cCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCC
Q 013871 52 WPSIRFSSDEAVACRM-ATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQ 130 (434)
Q Consensus 52 ~~~~~~S~d~~~la~~-~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~ 130 (434)
-.|++||+.|.+||.+ .+|.|.|||..++........|...|.+++||+++..++. ...+..|.+|++..
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~Llt------sS~D~si~lwDl~~--- 96 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLT------SSRDWSIKLWDLLK--- 96 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeee------ecCCceeEEEeccC---
Confidence 3489999999999998 6789999999998876677788889999999999544442 35667899999987
Q ss_pred CCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCe----EEEEECcC
Q 013871 131 SQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPV----HDVQWSYS 206 (434)
Q Consensus 131 ~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i----~~v~wspd 206 (434)
+.++.+.. |...+....|.|.....++.+..+. .. +.++........++.+.++.. ....|.+.
T Consensus 97 gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~--sp---------~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~ 164 (405)
T KOG1273|consen 97 GSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEE--SP---------VVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRR 164 (405)
T ss_pred CCceeEEE-ccCccceeeeccccCCeEEEEEecC--Cc---------EEEEecCCceeeccCCCccccccccccccccCC
Confidence 66655544 5667788889997766655443221 11 122222121222333322222 22358888
Q ss_pred CCEEEEEEccCCCeEEEEeccc-ceeEEe--C-CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC-------E--E
Q 013871 207 GSEFAVVYGFMPASATIFNKKC-RPILEL--G-SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG-------K--Q 273 (434)
Q Consensus 207 g~~~av~~g~~~~~v~l~d~~~-~~~~~~--~-~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~-------~--~ 273 (434)
|+++. +|..-|++.+||..+ +.+..+ . ...+..|.++-.|++|++-.. |..|+.|+.+.- + .
T Consensus 165 g~yIi--tGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNts---DRvIR~ye~~di~~~~r~~e~e~ 239 (405)
T KOG1273|consen 165 GKYII--TGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTS---DRVIRTYEISDIDDEGRDGEVEP 239 (405)
T ss_pred CCEEE--EecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecC---CceEEEEehhhhcccCccCCcCh
Confidence 99888 688889999999864 334443 3 367889999999999999884 459999997632 1 1
Q ss_pred EEEeeCC----CceEEEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceeeee--ec-ccceeeEEEcCCCCCCCC
Q 013871 274 LGTTRAE----CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKK--MF-DKLFQAEWKPVSPDKFGD 342 (434)
Q Consensus 274 i~~~~~~----~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~-~g~~~~~~--~~-~~~~~~~w~p~~~~~~~~ 342 (434)
...++.- .-..|.||.||.|++.++.. ...++||.- .|.++... .. +++.+|.|+|..+.+.+-
T Consensus 240 ~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~-----aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si 311 (405)
T KOG1273|consen 240 EHKLQDVVNKLQWKKCCFSGDGEYVCAGSAR-----AHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI 311 (405)
T ss_pred hHHHHHHHhhhhhhheeecCCccEEEecccc-----ceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec
Confidence 1222211 11238999999999988863 789999997 57766554 33 679999999998776664
No 143
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.66 E-value=2.8e-14 Score=130.89 Aligned_cols=292 Identities=16% Similarity=0.191 Sum_probs=182.8
Q ss_pred cceEEecCCCc-EEEEEecCCCCCCCcEEEEEcCCCc------EEEEEeecCcCCCCCCeeeecCCCcEEEEecC-CeEE
Q 013871 2 LLLLTCLRVGL-IIQTFQKSSTPQEKNVILWKTETGE------AVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT-NEIQ 73 (434)
Q Consensus 2 V~~l~fSP~g~-~L~t~~~~~~~~d~~v~iWd~~~g~------~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~-~~i~ 73 (434)
|..+.|.+.+. .|+|++ .|..|+||.+..++ .+.-......|...++++.|+|+|.+||++.| ++|.
T Consensus 16 v~s~dfq~n~~~~laT~G-----~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~ 90 (434)
T KOG1009|consen 16 VYSVDFQKNSLNKLATAG-----GDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVF 90 (434)
T ss_pred eEEEEeccCcccceeccc-----CccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEE
Confidence 56788888776 999988 89999999885432 22222222335578889999999999999976 5999
Q ss_pred EEeCCC-------------CCCcee---eeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeee
Q 013871 74 FFDTTD-------------FPKGIL---YRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARR 137 (434)
Q Consensus 74 v~~~~~-------------~~~~~~---~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~ 137 (434)
+|...+ .+...+ ...|.+.|.+++|+|++ ..+.. +..+..+++|++.. ++.++..
T Consensus 91 lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~-~~l~s-----~s~dns~~l~Dv~~---G~l~~~~ 161 (434)
T KOG1009|consen 91 LWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDS-NFLVS-----GSVDNSVRLWDVHA---GQLLAIL 161 (434)
T ss_pred EEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCC-ceeee-----eeccceEEEEEecc---ceeEeec
Confidence 998761 010111 12334678999999994 44432 34557899999988 8889999
Q ss_pred eecccceeEEEECCCCCeEEEEEEecccccCcee--ecceeEEEEe-------eC-CcceeeeecCCC----CCeEEEEE
Q 013871 138 SFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSY--YGESKLNYLT-------TD-GTHEGLVPLRKE----GPVHDVQW 203 (434)
Q Consensus 138 ~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~--~g~~~l~~l~-------~~-~~~~~~v~l~~~----~~i~~v~w 203 (434)
..|...+--++|.|-+++++... .|...+.+ .-..-++.+. .. ........+-++ .-.+.++|
T Consensus 162 ~dh~~yvqgvawDpl~qyv~s~s---~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsf 238 (434)
T KOG1009|consen 162 DDHEHYVQGVAWDPLNQYVASKS---SDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSF 238 (434)
T ss_pred cccccccceeecchhhhhhhhhc---cCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhccc
Confidence 99999999999999999876542 33322211 1111112111 00 000001111111 12245789
Q ss_pred CcCCCEEEEEEccC-------CCeEEEEecc--cceeEEe--CCcCeeEEEE------------------CCCCCeEEEE
Q 013871 204 SYSGSEFAVVYGFM-------PASATIFNKK--CRPILEL--GSGPYNTVRW------------------NPKGKFLCLA 254 (434)
Q Consensus 204 spdg~~~av~~g~~-------~~~v~l~d~~--~~~~~~~--~~~~~~~i~~------------------SP~g~~l~~~ 254 (434)
+|||..++.-+|.- .+..++|+-+ ..+...+ ...+...+.| -|.+-.+|+|
T Consensus 239 TPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiA 318 (434)
T KOG1009|consen 239 TPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIA 318 (434)
T ss_pred CCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEe
Confidence 99998887432221 2245666532 2222222 1222222222 3445556666
Q ss_pred ecCCCCCeEEEEEccCCEEEEEeeC---CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceee
Q 013871 255 GFGNLPGDMAFWDYVDGKQLGTTRA---ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFF 320 (434)
Q Consensus 255 ~~~~~~g~i~iwd~~~~~~i~~~~~---~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~~~ 320 (434)
..+ .|+|||.++.+.+..... +.+++++||+||.+|+..++ |+-.-+-.+.+..+.
T Consensus 319 t~~----svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~------DGyCS~vtfe~~elg 377 (434)
T KOG1009|consen 319 TKN----SVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSST------DGFCSLVTFEPWELG 377 (434)
T ss_pred ecc----eEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEecc------CCceEEEEEcchhcc
Confidence 533 699999998776655433 47778999999999999999 988887777666544
No 144
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=1.2e-14 Score=135.17 Aligned_cols=264 Identities=13% Similarity=0.137 Sum_probs=180.6
Q ss_pred CCCCeeeecCCCcEEEEe-cCCeEEEEeCCCCCCceeeeeecC--CeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcC
Q 013871 50 TTWPSIRFSSDEAVACRM-ATNEIQFFDTTDFPKGILYRLRVP--GVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACG 126 (434)
Q Consensus 50 ~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~~~~~~~~~~~~--~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~ 126 (434)
..+++++|.|.-.+|.++ .|+.++||.++.........+++. .|....|+|++...+++ .+.......|++.
T Consensus 214 ~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~-----s~rrky~ysyDle 288 (514)
T KOG2055|consen 214 GGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFT-----SGRRKYLYSYDLE 288 (514)
T ss_pred CCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEe-----cccceEEEEeecc
Confidence 677899999999887776 588999999876443333344443 58889999985434442 3444577889987
Q ss_pred CCCCCCceeeeeec-ccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECc
Q 013871 127 KDLQSQPLARRSFF-RCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSY 205 (434)
Q Consensus 127 ~~~~~~~i~~~~~~-~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wsp 205 (434)
... -..+...... ....-.+.-++++++|++.. ..+ -|+++..... +-...+..+|.|.+++|+.
T Consensus 289 ~ak-~~k~~~~~g~e~~~~e~FeVShd~~fia~~G-----~~G-------~I~lLhakT~-eli~s~KieG~v~~~~fsS 354 (514)
T KOG2055|consen 289 TAK-VTKLKPPYGVEEKSMERFEVSHDSNFIAIAG-----NNG-------HIHLLHAKTK-ELITSFKIEGVVSDFTFSS 354 (514)
T ss_pred ccc-cccccCCCCcccchhheeEecCCCCeEEEcc-----cCc-------eEEeehhhhh-hhhheeeeccEEeeEEEec
Confidence 621 1111111111 12234567899999877642 111 2566654443 3333444589999999999
Q ss_pred CCCEEEEEEccCCCeEEEEecccc-eeEEe---CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC------EEEE
Q 013871 206 SGSEFAVVYGFMPASATIFNKKCR-PILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG------KQLG 275 (434)
Q Consensus 206 dg~~~av~~g~~~~~v~l~d~~~~-~~~~~---~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~------~~i~ 275 (434)
||+.+.++. .++.|++||++.. .++.+ +.-.-++++.|++|.|||+|+ ..|-|.|||.++. +.+.
T Consensus 355 dsk~l~~~~--~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS---~~GiVNIYd~~s~~~s~~PkPik 429 (514)
T KOG2055|consen 355 DSKELLASG--GTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGS---DSGIVNIYDGNSCFASTNPKPIK 429 (514)
T ss_pred CCcEEEEEc--CCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEecc---CcceEEEeccchhhccCCCCchh
Confidence 998888743 3579999999754 34444 223346799999999999998 6689999997643 3444
Q ss_pred EeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceeeee------ecccceeeEEEcCCCCCCC
Q 013871 276 TTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKK------MFDKLFQAEWKPVSPDKFG 341 (434)
Q Consensus 276 ~~~~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~~~~~------~~~~~~~~~w~p~~~~~~~ 341 (434)
.+..- .++.+.|+||++.|+.++. .+++.+|+-|+-...++.. ....+.+++|+|.+-++.-
T Consensus 430 ~~dNLtt~Itsl~Fn~d~qiLAiaS~----~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAv 499 (514)
T KOG2055|consen 430 TVDNLTTAITSLQFNHDAQILAIASR----VKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAV 499 (514)
T ss_pred hhhhhheeeeeeeeCcchhhhhhhhh----ccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEe
Confidence 44332 5666999999999999887 3489999999977766653 3457899999998655443
No 145
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.66 E-value=3.1e-14 Score=141.24 Aligned_cols=252 Identities=13% Similarity=0.099 Sum_probs=152.8
Q ss_pred cEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC----CeEEEEeCCCCCCceeee
Q 013871 12 LIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT----NEIQFFDTTDFPKGILYR 87 (434)
Q Consensus 12 ~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~----~~i~v~~~~~~~~~~~~~ 87 (434)
..|+..... ....+|.+||. +|...+.+.... ..+.+++|||||+.|++... ..|.+||+..... ..
T Consensus 164 ~~iayv~~~--~~~~~L~~~D~-dG~~~~~l~~~~---~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~---~~ 234 (427)
T PRK02889 164 TRIAYVIKT--GNRYQLQISDA-DGQNAQSALSSP---EPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRR---RV 234 (427)
T ss_pred cEEEEEEcc--CCccEEEEECC-CCCCceEeccCC---CCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCE---EE
Confidence 345554421 12457888886 455445544332 45558999999999988742 3699999976432 22
Q ss_pred ee-c-CCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEeccc
Q 013871 88 LR-V-PGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVD 165 (434)
Q Consensus 88 ~~-~-~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d 165 (434)
+. . ..+....|||+ +..+++.... .+...||.+... +..+..++.+........|+|||+.|++...
T Consensus 235 l~~~~g~~~~~~~SPD-G~~la~~~~~----~g~~~Iy~~d~~--~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~---- 303 (427)
T PRK02889 235 VANFKGSNSAPAWSPD-GRTLAVALSR----DGNSQIYTVNAD--GSGLRRLTQSSGIDTEPFFSPDGRSIYFTSD---- 303 (427)
T ss_pred eecCCCCccceEECCC-CCEEEEEEcc----CCCceEEEEECC--CCCcEECCCCCCCCcCeEEcCCCCEEEEEec----
Confidence 22 2 24567899999 4555443221 223455554321 2234444444444567889999999877421
Q ss_pred ccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccC-CCeEEEEecccceeEEeC-CcCeeEEE
Q 013871 166 KTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFM-PASATIFNKKCRPILELG-SGPYNTVR 243 (434)
Q Consensus 166 ~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~-~~~v~l~d~~~~~~~~~~-~~~~~~i~ 243 (434)
.. |...||.++..+.....+... .......+|||||+.+++.+... ...|.+||+.......+. ........
T Consensus 304 ~~-----g~~~Iy~~~~~~g~~~~lt~~-g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~~~~~~p~ 377 (427)
T PRK02889 304 RG-----GAPQIYRMPASGGAAQRVTFT-GSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTDTTRDESPS 377 (427)
T ss_pred CC-----CCcEEEEEECCCCceEEEecC-CCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccCCCCccCce
Confidence 11 233578887766544444433 23345689999999999754321 127899998765555542 23346789
Q ss_pred ECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC--CCceEEEECCC
Q 013871 244 WNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA--ECSVTSEWSPD 290 (434)
Q Consensus 244 ~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~--~~~~~~~wspd 290 (434)
|+|||++|+.+........+++.+.. ++....+.. ..+...+|||-
T Consensus 378 ~spdg~~l~~~~~~~g~~~l~~~~~~-g~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 378 FAPNGRYILYATQQGGRSVLAAVSSD-GRIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred ECCCCCEEEEEEecCCCEEEEEEECC-CCceEEeecCCCCCCCCccCCC
Confidence 99999999988755434567777774 443333332 24556899883
No 146
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.64 E-value=4e-14 Score=126.39 Aligned_cols=266 Identities=15% Similarity=0.172 Sum_probs=166.8
Q ss_pred ceEEecCCCcEEEEEecCCCCCCCcEEEEEcCC-------CcE-------EEEEeecCcCCCCCCeeee-------cCCC
Q 013871 3 LLLTCLRVGLIIQTFQKSSTPQEKNVILWKTET-------GEA-------VYQLFQKNMTKTTWPSIRF-------SSDE 61 (434)
Q Consensus 3 ~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~-------g~~-------~~~~~~~~~~~~~~~~~~~-------S~d~ 61 (434)
..+.|||||+-|++-+ +|..+.+|++.. +.. ...+.. ...+-...| -|+.
T Consensus 53 kgckWSPDGSciL~~s-----edn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~e----g~tvydy~wYs~M~s~qP~t 123 (406)
T KOG2919|consen 53 KGCKWSPDGSCILSLS-----EDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQE----GETVYDYCWYSRMKSDQPST 123 (406)
T ss_pred ccceeCCCCceEEeec-----ccCeeeEEecChhhcccCCCCccccccceeEEecc----CCEEEEEEeeeccccCCCcc
Confidence 4578999999999988 899999999831 111 111111 122223334 2566
Q ss_pred cEEEEec-CCeEEEEeCCCCCCceeee--ee---cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCcee
Q 013871 62 AVACRMA-TNEIQFFDTTDFPKGILYR--LR---VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLA 135 (434)
Q Consensus 62 ~~la~~~-~~~i~v~~~~~~~~~~~~~--~~---~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~ 135 (434)
.++|... ++-|++||..+.......+ -+ +....++.|+||+..++| |....|++|++......-++.
T Consensus 124 ~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfa-------GykrcirvFdt~RpGr~c~vy 196 (406)
T KOG2919|consen 124 NLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFA-------GYKRCIRVFDTSRPGRDCPVY 196 (406)
T ss_pred ceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEee-------cccceEEEeeccCCCCCCcch
Confidence 7777664 5799999987754322211 11 234568999999777776 556789999984321011111
Q ss_pred e-----eeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEE
Q 013871 136 R-----RSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEF 210 (434)
Q Consensus 136 ~-----~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~ 210 (434)
. +...+.-+.+++++|-...++... +|-....||.- .+.....+...+.+.|..++|.++|++|
T Consensus 197 ~t~~~~k~gq~giisc~a~sP~~~~~~a~g---------sY~q~~giy~~--~~~~pl~llggh~gGvThL~~~edGn~l 265 (406)
T KOG2919|consen 197 TTVTKGKFGQKGIISCFAFSPMDSKTLAVG---------SYGQRVGIYND--DGRRPLQLLGGHGGGVTHLQWCEDGNKL 265 (406)
T ss_pred hhhhcccccccceeeeeeccCCCCcceeee---------cccceeeeEec--CCCCceeeecccCCCeeeEEeccCcCee
Confidence 1 111133445777888655333221 22222234432 2222333333568999999999999999
Q ss_pred EEEEccCCCeEEEEecc--cceeEEe--C---CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccC-CEEEEEeeCC--
Q 013871 211 AVVYGFMPASATIFNKK--CRPILEL--G---SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD-GKQLGTTRAE-- 280 (434)
Q Consensus 211 av~~g~~~~~v~l~d~~--~~~~~~~--~---~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~-~~~i~~~~~~-- 280 (434)
.+- ...+.+|..||++ ..++..+ | +..+..+...|+|++|++|+ .+|.|.+||+++ +..+..+..+
T Consensus 266 fsG-aRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~---tdG~V~vwdlk~~gn~~sv~~~~sd 341 (406)
T KOG2919|consen 266 FSG-ARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGD---TDGSVRVWDLKDLGNEVSVTGNYSD 341 (406)
T ss_pred ccc-ccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccC---CCccEEEEecCCCCCcccccccccc
Confidence 852 3346699999997 3455555 2 44555677789999999987 678999999998 5655555544
Q ss_pred CceEEEECCCCCEEEEEEc
Q 013871 281 CSVTSEWSPDGRYFMTATT 299 (434)
Q Consensus 281 ~~~~~~wspdg~~l~tas~ 299 (434)
.+..++++|--..++|++.
T Consensus 342 ~vNgvslnP~mpilatssG 360 (406)
T KOG2919|consen 342 TVNGVSLNPIMPILATSSG 360 (406)
T ss_pred cccceecCcccceeeeccC
Confidence 4445999999887777764
No 147
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.63 E-value=3.3e-13 Score=134.38 Aligned_cols=242 Identities=12% Similarity=0.096 Sum_probs=150.8
Q ss_pred eEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEEC
Q 013871 71 EIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWN 150 (434)
Q Consensus 71 ~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws 150 (434)
+|.++|....+. .........+....|||+ +..+++...+. ....|.++++.. ++. ...+.+......+.|+
T Consensus 199 ~l~i~d~dG~~~-~~l~~~~~~~~~p~wSPD-G~~La~~s~~~--g~~~L~~~dl~t---g~~-~~lt~~~g~~~~~~wS 270 (448)
T PRK04792 199 QLMIADYDGYNE-QMLLRSPEPLMSPAWSPD-GRKLAYVSFEN--RKAEIFVQDIYT---QVR-EKVTSFPGINGAPRFS 270 (448)
T ss_pred EEEEEeCCCCCc-eEeecCCCcccCceECCC-CCEEEEEEecC--CCcEEEEEECCC---CCe-EEecCCCCCcCCeeEC
Confidence 677777655332 222222345778999999 56665544332 224677888765 332 2233333344578999
Q ss_pred CCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccC-CCeEEEEecccc
Q 013871 151 RGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFM-PASATIFNKKCR 229 (434)
Q Consensus 151 ~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~-~~~v~l~d~~~~ 229 (434)
|||+.|++..+.+ |...||.++..+.....++. ........+|+|||+.+++.+... ...+.++|+.+.
T Consensus 271 PDG~~La~~~~~~---------g~~~Iy~~dl~tg~~~~lt~-~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g 340 (448)
T PRK04792 271 PDGKKLALVLSKD---------GQPEIYVVDIATKALTRITR-HRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASG 340 (448)
T ss_pred CCCCEEEEEEeCC---------CCeEEEEEECCCCCeEECcc-CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 9999988764321 33468888877654333322 234567799999999998754321 236777788655
Q ss_pred eeEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceEEEECCCCCEEEEEEcCCceeeCC
Q 013871 230 PILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDN 307 (434)
Q Consensus 230 ~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~~~wspdg~~l~tas~~prl~~D~ 307 (434)
....+ .........|||||++|+..+..+....|.++|+.+++..............|+|||++|+.++.. ++
T Consensus 341 ~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~~~~d~~ps~spdG~~I~~~~~~-----~g 415 (448)
T PRK04792 341 KVSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLTSTRLDESPSVAPNGTMVIYSTTY-----QG 415 (448)
T ss_pred CEEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEEccCCCCCCCceECCCCCEEEEEEec-----CC
Confidence 44433 323334579999999998877544334677789888754332222222346899999999988862 33
Q ss_pred --cEEEEeecCceeeeeec--ccceeeEEEcC
Q 013871 308 --GIKIFHHNGSLFFKKMF--DKLFQAEWKPV 335 (434)
Q Consensus 308 --~i~iw~~~g~~~~~~~~--~~~~~~~w~p~ 335 (434)
.+.+++.+|........ .++....|+|.
T Consensus 416 ~~~l~~~~~~G~~~~~l~~~~g~~~~p~Wsp~ 447 (448)
T PRK04792 416 KQVLAAVSIDGRFKARLPAGQGEVKSPAWSPF 447 (448)
T ss_pred ceEEEEEECCCCceEECcCCCCCcCCCccCCC
Confidence 36777888886655432 45677788874
No 148
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.63 E-value=2.9e-14 Score=127.52 Aligned_cols=294 Identities=14% Similarity=0.176 Sum_probs=184.5
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe--cCCeEEEEeCCC
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM--ATNEIQFFDTTD 79 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~--~~~~i~v~~~~~ 79 (434)
|..|.|+.|.-|++..- ..|+.|.+|++..-+--..+...+ .+...+.|||||+.+..- .+-.|.||.+.+
T Consensus 51 i~yieW~ads~~ilC~~----yk~~~vqvwsl~Qpew~ckIdeg~---agls~~~WSPdgrhiL~tseF~lriTVWSL~t 123 (447)
T KOG4497|consen 51 IVYIEWKADSCHILCVA----YKDPKVQVWSLVQPEWYCKIDEGQ---AGLSSISWSPDGRHILLTSEFDLRITVWSLNT 123 (447)
T ss_pred hhheeeeccceeeeeee----eccceEEEEEeecceeEEEeccCC---CcceeeeECCCcceEeeeecceeEEEEEEecc
Confidence 45678888888887644 157899999998776655554443 566689999999876655 356999999987
Q ss_pred CCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEE
Q 013871 80 FPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAV 159 (434)
Q Consensus 80 ~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~ 159 (434)
-. +........++..++|.|+ +.+.++.... .-...+.|..... =..+.....-..+.+.+.|+|||+.|++.
T Consensus 124 ~~-~~~~~~pK~~~kg~~f~~d-g~f~ai~sRr--DCkdyv~i~~c~~---W~ll~~f~~dT~DltgieWsPdg~~laVw 196 (447)
T KOG4497|consen 124 QK-GYLLPHPKTNVKGYAFHPD-GQFCAILSRR--DCKDYVQISSCKA---WILLKEFKLDTIDLTGIEWSPDGNWLAVW 196 (447)
T ss_pred ce-eEEecccccCceeEEECCC-Cceeeeeecc--cHHHHHHHHhhHH---HHHHHhcCCCcccccCceECCCCcEEEEe
Confidence 33 2323333457899999999 5666654332 1111222211100 00001111122355678999999998774
Q ss_pred EEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEec-------------
Q 013871 160 AQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNK------------- 226 (434)
Q Consensus 160 ~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~------------- 226 (434)
-+. .+. .+|.. +. .-.+..++|+|.++.++| |+-|+.+++.+.
T Consensus 197 d~~-Ley---------kv~aY------e~------~lG~k~v~wsP~~qflav--GsyD~~lrvlnh~tWk~f~eflhl~ 252 (447)
T KOG4497|consen 197 DNV-LEY---------KVYAY------ER------GLGLKFVEWSPCNQFLAV--GSYDQMLRVLNHFTWKPFGEFLHLC 252 (447)
T ss_pred cch-hhh---------eeeee------ee------ccceeEEEeccccceEEe--eccchhhhhhceeeeeehhhhccch
Confidence 211 111 11211 11 235678888888888875 666655443320
Q ss_pred --------------------------------c------cce----------eE------Ee--CCcCeeEEEECCCCCe
Q 013871 227 --------------------------------K------CRP----------IL------EL--GSGPYNTVRWNPKGKF 250 (434)
Q Consensus 227 --------------------------------~------~~~----------~~------~~--~~~~~~~i~~SP~g~~ 250 (434)
. .+. ++ ++ ....+.-++||+|..|
T Consensus 253 s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y 332 (447)
T KOG4497|consen 253 SYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTY 332 (447)
T ss_pred hccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceE
Confidence 0 000 00 00 1123445999999999
Q ss_pred EEEEecCCCCCeEEEEEccCCEEEEEe-eCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceeeeeecc--cc
Q 013871 251 LCLAGFGNLPGDMAFWDYVDGKQLGTT-RAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKKMFD--KL 327 (434)
Q Consensus 251 l~~~~~~~~~g~i~iwd~~~~~~i~~~-~~~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~~~~~~~~--~~ 327 (434)
+++-. ++....+.+||+++.+....+ +-+.+..+.|.|.-..|+.++. ...+.+|...|..+...+.. .+
T Consensus 333 ~aTrn-d~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~~prL~vctg------~srLY~W~psg~~~V~vP~~GF~i 405 (447)
T KOG4497|consen 333 AATRN-DKYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPGRPRLVVCTG------KSRLYFWAPSGPRVVGVPKKGFNI 405 (447)
T ss_pred Eeeec-CCCCceEEEEechhhhhhhhhhhccceeEEEeCCCCceEEEEcC------CceEEEEcCCCceEEecCCCCcee
Confidence 99864 557789999999988765554 3356777999999999999988 55679999999665555444 46
Q ss_pred eeeEEEcCCCCCC
Q 013871 328 FQAEWKPVSPDKF 340 (434)
Q Consensus 328 ~~~~w~p~~~~~~ 340 (434)
..+.|.-.+..+.
T Consensus 406 ~~l~W~~~g~~i~ 418 (447)
T KOG4497|consen 406 QKLQWLQPGEFIV 418 (447)
T ss_pred eeEEecCCCcEEE
Confidence 7888987766543
No 149
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.62 E-value=7.2e-13 Score=131.04 Aligned_cols=247 Identities=10% Similarity=0.053 Sum_probs=146.7
Q ss_pred eEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEEC
Q 013871 71 EIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWN 150 (434)
Q Consensus 71 ~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws 150 (434)
+|.+.|.+.... ...+.....+.+..|||++.....+|+....+ ...|.+.++.. ++ ...++.+........|+
T Consensus 166 ~l~~~d~dG~~~-~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g-~~~I~~~~l~~---g~-~~~lt~~~g~~~~p~wS 239 (428)
T PRK01029 166 ELWSVDYDGQNL-RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLG-VPKIFLGSLEN---PA-GKKILALQGNQLMPTFS 239 (428)
T ss_pred eEEEEcCCCCCc-eEcccCCCCcccceEccCCCceEEEEEEccCC-CceEEEEECCC---CC-ceEeecCCCCccceEEC
Confidence 566666654332 21222233456789999965433334443333 34677777765 32 23334455556678999
Q ss_pred CCCCeEEEEEEecccccCceeecceeEEEE--eeCC---cceeeeecCCCCCeEEEEECcCCCEEEEEEccCCC--eEEE
Q 013871 151 RGSTGLLAVAQSDVDKTNQSYYGESKLNYL--TTDG---THEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPA--SATI 223 (434)
Q Consensus 151 ~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l--~~~~---~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~--~v~l 223 (434)
|||+.|++..+.. |...+|.. +... .....+.-...+.....+|||||+.+++++. .++ .+.+
T Consensus 240 PDG~~Laf~s~~~---------g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~-~~g~~~ly~ 309 (428)
T PRK01029 240 PRKKLLAFISDRY---------GNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSN-KDGRPRIYI 309 (428)
T ss_pred CCCCEEEEEECCC---------CCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEEC-CCCCceEEE
Confidence 9999998764221 11123332 2221 1112222111234467899999999998653 234 4555
Q ss_pred Eecc--cceeEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC-CceEEEECCCCCEEEEEE
Q 013871 224 FNKK--CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-CSVTSEWSPDGRYFMTAT 298 (434)
Q Consensus 224 ~d~~--~~~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-~~~~~~wspdg~~l~tas 298 (434)
+++. +.....+ +...+....|||||++|+..+..+....|++||+.+++........ ......|+|||++|+..+
T Consensus 310 ~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~ 389 (428)
T PRK01029 310 MQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSA 389 (428)
T ss_pred EECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEE
Confidence 5653 2223323 3455678999999999988765443468999999988655444332 445589999999998766
Q ss_pred cCCceeeCCcEEEEeecCceeeee--ecccceeeEEEcCC
Q 013871 299 TAPRLQIDNGIKIFHHNGSLFFKK--MFDKLFQAEWKPVS 336 (434)
Q Consensus 299 ~~prl~~D~~i~iw~~~g~~~~~~--~~~~~~~~~w~p~~ 336 (434)
.. +-+..|.+|++++...... ...+.....|+|..
T Consensus 390 ~~---~g~~~L~~vdl~~g~~~~Lt~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 390 GN---SNESELYLISLITKKTRKIVIGSGEKRFPSWGAFP 426 (428)
T ss_pred CC---CCCceEEEEECCCCCEEEeecCCCcccCceecCCC
Confidence 52 1135688888877644433 22356788888764
No 150
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.61 E-value=2.3e-14 Score=138.48 Aligned_cols=243 Identities=14% Similarity=0.141 Sum_probs=172.5
Q ss_pred eEEec-CCCcEEEEEecCCCCCCCcEEEEEcCCC--c----EEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEE
Q 013871 4 LLTCL-RVGLIIQTFQKSSTPQEKNVILWKTETG--E----AVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFF 75 (434)
Q Consensus 4 ~l~fS-P~g~~L~t~~~~~~~~d~~v~iWd~~~g--~----~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~ 75 (434)
++..+ |.|+||.|.+ .|+.|++|++... + .+.++.++ .+-+..+....+++-|++++ |-+|++|
T Consensus 29 ~Lq~da~~~ryLfTgG-----RDg~i~~W~~~~d~~~~s~~~~asme~H---sDWVNDiiL~~~~~tlIS~SsDtTVK~W 100 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGG-----RDGIIRLWSVTQDSNEPSTPYIASMEHH---SDWVNDIILCGNGKTLISASSDTTVKVW 100 (735)
T ss_pred hccccCCCCceEEecC-----CCceEEEeccccccCCcccchhhhhhhh---HhHHhhHHhhcCCCceEEecCCceEEEe
Confidence 45555 5678899988 7899999998432 1 23344443 24455566667887777774 5699999
Q ss_pred eCCCCC--CceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCC
Q 013871 76 DTTDFP--KGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGS 153 (434)
Q Consensus 76 ~~~~~~--~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G 153 (434)
+..... .....+-|.+-|.+++........+| ++|.+..|.||++... .... ...++
T Consensus 101 ~~~~~~~~c~stir~H~DYVkcla~~ak~~~lva-----SgGLD~~IflWDin~~---~~~l----------~~s~n--- 159 (735)
T KOG0308|consen 101 NAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVA-----SGGLDRKIFLWDINTG---TATL----------VASFN--- 159 (735)
T ss_pred ecccCcchhHhhhhcccchheeeeecccCceeEE-----ecCCCccEEEEEccCc---chhh----------hhhcc---
Confidence 987653 22344566777888888333245555 5789999999999762 1100 00000
Q ss_pred CeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-cceeE
Q 013871 154 TGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPIL 232 (434)
Q Consensus 154 ~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~-~~~~~ 232 (434)
. +- .+........+|++++-.++|.. +++|+..+.+++||-+ +..+.
T Consensus 160 -~---------------------~t--------~~sl~sG~k~siYSLA~N~t~t~--ivsGgtek~lr~wDprt~~kim 207 (735)
T KOG0308|consen 160 -N---------------------VT--------VNSLGSGPKDSIYSLAMNQTGTI--IVSGGTEKDLRLWDPRTCKKIM 207 (735)
T ss_pred -c---------------------cc--------cccCCCCCccceeeeecCCcceE--EEecCcccceEEecccccccee
Confidence 0 00 00000022578999999999944 4478888999999986 44455
Q ss_pred Ee--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCc
Q 013871 233 EL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNG 308 (434)
Q Consensus 233 ~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~prl~~D~~ 308 (434)
.+ |+..|..+..++||+.+++++ .||+|++||+...+++.++..| .++.+.-+|+=.++.+|+. |+.
T Consensus 208 kLrGHTdNVr~ll~~dDGt~~ls~s---SDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~r------d~~ 278 (735)
T KOG0308|consen 208 KLRGHTDNVRVLLVNDDGTRLLSAS---SDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGR------DGN 278 (735)
T ss_pred eeeccccceEEEEEcCCCCeEeecC---CCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCC------CCc
Confidence 55 889999999999999999998 6789999999999999999887 5666888899999999999 999
Q ss_pred EEEEeecC
Q 013871 309 IKIFHHNG 316 (434)
Q Consensus 309 i~iw~~~g 316 (434)
|..=++..
T Consensus 279 i~~Tdl~n 286 (735)
T KOG0308|consen 279 IYRTDLRN 286 (735)
T ss_pred EEecccCC
Confidence 88877744
No 151
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=3.2e-13 Score=126.07 Aligned_cols=289 Identities=11% Similarity=0.136 Sum_probs=195.5
Q ss_pred CCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe--cCCeEEEEeCCCCCCceeeeeecC-CeeEEEEeC
Q 013871 24 QEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM--ATNEIQFFDTTDFPKGILYRLRVP-GVAAFEVSK 100 (434)
Q Consensus 24 ~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~--~~~~i~v~~~~~~~~~~~~~~~~~-~v~~~~~sp 100 (434)
+..++.+||+.||..+-+|.+....+.. .+. .=.+.|++++ ....|++|.+....... .+...+ .|.++.-+|
T Consensus 16 d~~~~~~~dl~TGt~~~~ykg~~~a~~~--sl~-~l~~~yllsaq~~rp~l~vw~i~k~~~~~-q~~v~Pg~v~al~s~n 91 (476)
T KOG0646|consen 16 DPINCIVWDLRTGTSLLQYKGSYLAQAA--SLT-ALNNEYLLSAQLKRPLLHVWEILKKDQVV-QYIVLPGPVHALASSN 91 (476)
T ss_pred CCcceeEEecCCCceeEEecCcccccch--hhh-hhchhheeeecccCccccccccCchhhhh-hhcccccceeeeecCC
Confidence 3467999999999998888765211100 000 0134677666 34599999987644322 233344 477788888
Q ss_pred CCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEE
Q 013871 101 APGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYL 180 (434)
Q Consensus 101 ~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l 180 (434)
++ .+++ .++..+.+.+|.+.+ +..+..+..|-..++++.|+.||.+++.. ..|.....|.- ..++
T Consensus 92 ~G-~~l~-----ag~i~g~lYlWelss---G~LL~v~~aHYQ~ITcL~fs~dgs~iiTg---skDg~V~vW~l---~~lv 156 (476)
T KOG0646|consen 92 LG-YFLL-----AGTISGNLYLWELSS---GILLNVLSAHYQSITCLKFSDDGSHIITG---SKDGAVLVWLL---TDLV 156 (476)
T ss_pred Cc-eEEE-----eecccCcEEEEEecc---ccHHHHHHhhccceeEEEEeCCCcEEEec---CCCccEEEEEE---Eeec
Confidence 74 3333 134678999999998 88888888888899999999999986432 23433333321 1112
Q ss_pred eeCCcceeeee----cCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-cceeEEe-CCcCeeEEEECCCCCeEEEE
Q 013871 181 TTDGTHEGLVP----LRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL-GSGPYNTVRWNPKGKFLCLA 254 (434)
Q Consensus 181 ~~~~~~~~~v~----l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~-~~~~~~~-~~~~~~~i~~SP~g~~l~~~ 254 (434)
+.+..+ ...+ -+|.-+|.++...+.|..-.+.+.+.|.++++||+. +..+.++ -...+++++..|-++.+.+|
T Consensus 157 ~a~~~~-~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiG 235 (476)
T KOG0646|consen 157 SADNDH-SVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIG 235 (476)
T ss_pred ccccCC-CccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEec
Confidence 222221 1111 134678999988876544444467889999999996 4445554 47788999999999999998
Q ss_pred ecCCCCCeEEEEEccCC----------------EEEEEeeCC----CceEEEECCCCCEEEEEEcCCceeeCCcEEEEee
Q 013871 255 GFGNLPGDMAFWDYVDG----------------KQLGTTRAE----CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH 314 (434)
Q Consensus 255 ~~~~~~g~i~iwd~~~~----------------~~i~~~~~~----~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~ 314 (434)
+ .+|.|.+.++.+. ..+..+.+| .+++++.|-||..|++|+. ||.|+|||+
T Consensus 236 t---~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~------dg~VcvWdi 306 (476)
T KOG0646|consen 236 T---EEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDE------DGKVCVWDI 306 (476)
T ss_pred C---CcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCC------CCCEEEEec
Confidence 8 6789998876432 234444444 5778999999999999999 999999999
Q ss_pred cCc-eeeee--ecccceeeEEEcCCCCCCC
Q 013871 315 NGS-LFFKK--MFDKLFQAEWKPVSPDKFG 341 (434)
Q Consensus 315 ~g~-~~~~~--~~~~~~~~~w~p~~~~~~~ 341 (434)
..+ ++... ....+..+..+|..+.++.
T Consensus 307 ~S~Q~iRtl~~~kgpVtnL~i~~~~~~~~l 336 (476)
T KOG0646|consen 307 YSKQCIRTLQTSKGPVTNLQINPLERGIIL 336 (476)
T ss_pred chHHHHHHHhhhccccceeEeeccccceec
Confidence 665 33332 4578888888887665554
No 152
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.61 E-value=2.9e-13 Score=119.57 Aligned_cols=284 Identities=13% Similarity=0.157 Sum_probs=187.3
Q ss_pred cceEEecC-CCcEEEEEecCCCCCCCcEEEEEcCCCc------------EEEEEeecCcCCCCCCeeeecC-CCcEEEEe
Q 013871 2 LLLLTCLR-VGLIIQTFQKSSTPQEKNVILWKTETGE------------AVYQLFQKNMTKTTWPSIRFSS-DEAVACRM 67 (434)
Q Consensus 2 V~~l~fSP-~g~~L~t~~~~~~~~d~~v~iWd~~~g~------------~~~~~~~~~~~~~~~~~~~~S~-d~~~la~~ 67 (434)
|.+|+.-| .|+|+++.+ .|+.+.|||+++-. ++-.-.+...|+..+..+.|=| |.-.+.++
T Consensus 46 vNsL~id~tegrymlSGg-----adgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtss 120 (397)
T KOG4283|consen 46 VNSLQIDLTEGRYMLSGG-----ADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSS 120 (397)
T ss_pred cceeeeccccceEEeecC-----CCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecc
Confidence 44555555 478998877 89999999996543 1112223344667788889988 44455544
Q ss_pred -cCCeEEEEeCCCCCCceeeeeecC-CeeEEEEeCCCCC--eEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccc
Q 013871 68 -ATNEIQFFDTTDFPKGILYRLRVP-GVAAFEVSKAPGS--HVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCS 143 (434)
Q Consensus 68 -~~~~i~v~~~~~~~~~~~~~~~~~-~v~~~~~sp~~~~--~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~ 143 (434)
.|.+++|||++.... ...+..+ .|.+-+|||-... +||+ +.....|++.++.+ +..-..++.|...
T Consensus 121 SFDhtlKVWDtnTlQ~--a~~F~me~~VYshamSp~a~sHcLiA~-----gtr~~~VrLCDi~S---Gs~sH~LsGHr~~ 190 (397)
T KOG4283|consen 121 SFDHTLKVWDTNTLQE--AVDFKMEGKVYSHAMSPMAMSHCLIAA-----GTRDVQVRLCDIAS---GSFSHTLSGHRDG 190 (397)
T ss_pred cccceEEEeeccccee--eEEeecCceeehhhcChhhhcceEEEE-----ecCCCcEEEEeccC---CcceeeeccccCc
Confidence 688999999988653 3344443 5888889986332 3443 23345899999998 8888899999999
Q ss_pred eeEEEECCCCCeEEEEEEecccccCceeecc---eeEEEEeeCC-cceeee--ecCCCCCeEEEEECcCCCEEEEEEccC
Q 013871 144 TVQLNWNRGSTGLLAVAQSDVDKTNQSYYGE---SKLNYLTTDG-THEGLV--PLRKEGPVHDVQWSYSGSEFAVVYGFM 217 (434)
Q Consensus 144 ~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~---~~l~~l~~~~-~~~~~v--~l~~~~~i~~v~wspdg~~~av~~g~~ 217 (434)
+..+.|+|...+++... ..|...+.|.-. ..+..++... .....+ ...+.+.|+.++|+.||.+++. ...
T Consensus 191 vlaV~Wsp~~e~vLatg--saDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~--~gt 266 (397)
T KOG4283|consen 191 VLAVEWSPSSEWVLATG--SADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLAS--CGT 266 (397)
T ss_pred eEEEEeccCceeEEEec--CCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhh--ccC
Confidence 99999999999886554 456666655321 1122222211 111111 1234788999999999999995 455
Q ss_pred CCeEEEEecccc--eeEEeC-------CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEE
Q 013871 218 PASATIFNKKCR--PILELG-------SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSE 286 (434)
Q Consensus 218 ~~~v~l~d~~~~--~~~~~~-------~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~ 286 (434)
+.++++|+.... .+..++ .++-..+. +-+...++.-- .+|.|.++++-.+..|..+..| .+.++.
T Consensus 267 d~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p---~~~~lall~~~sgs~ir~l~~h~k~i~c~~ 342 (397)
T KOG4283|consen 267 DDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVLFP---NDGSLALLNLLEGSFVRRLSTHLKRINCAA 342 (397)
T ss_pred ccceEEeecccCcccccccccccccccccceEEEe-ecccceEEEEe---cCCeEEEEEccCceEEEeeecccceeeEEe
Confidence 779999987522 222221 11112233 33333333333 2368999999999988888777 455578
Q ss_pred ECCCCCEEEEEEcCCceeeCCcEEEEee
Q 013871 287 WSPDGRYFMTATTAPRLQIDNGIKIFHH 314 (434)
Q Consensus 287 wspdg~~l~tas~~prl~~D~~i~iw~~ 314 (434)
+-|+=+...++.. |+.|..|-.
T Consensus 343 ~~~~fq~~~tg~~------d~ni~~w~p 364 (397)
T KOG4283|consen 343 YRPDFEQCFTGDM------NGNIYMWSP 364 (397)
T ss_pred ecCchhhhhcccc------CCccccccc
Confidence 8899888888887 888888875
No 153
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.61 E-value=3.9e-12 Score=125.05 Aligned_cols=230 Identities=9% Similarity=-0.014 Sum_probs=140.6
Q ss_pred eEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEEC
Q 013871 71 EIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWN 150 (434)
Q Consensus 71 ~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws 150 (434)
+|.+-|.+.... ..... ...+....|||++ ..+++|....++. ..|.++++.+ ++ ...+..+........|+
T Consensus 170 ~l~~~d~dg~~~-~~~~~-~~~~~~p~wSpDG-~~~i~y~s~~~~~-~~Iyv~dl~t---g~-~~~lt~~~g~~~~~~~S 241 (419)
T PRK04043 170 NIVLADYTLTYQ-KVIVK-GGLNIFPKWANKE-QTAFYYTSYGERK-PTLYKYNLYT---GK-KEKIASSQGMLVVSDVS 241 (419)
T ss_pred eEEEECCCCCce-eEEcc-CCCeEeEEECCCC-CcEEEEEEccCCC-CEEEEEECCC---Cc-EEEEecCCCcEEeeEEC
Confidence 566655544322 11111 1245678999995 4333443332222 3788888865 32 33333345455567899
Q ss_pred CCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCC-eEEEEecccc
Q 013871 151 RGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPA-SATIFNKKCR 229 (434)
Q Consensus 151 ~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~-~v~l~d~~~~ 229 (434)
|||+.|++..+.+ +...||.+++.+.....++- ..+......|+|||+.+++++..... .|.++|+.+.
T Consensus 242 PDG~~la~~~~~~---------g~~~Iy~~dl~~g~~~~LT~-~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g 311 (419)
T PRK04043 242 KDGSKLLLTMAPK---------GQPDIYLYDTNTKTLTQITN-YPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSG 311 (419)
T ss_pred CCCCEEEEEEccC---------CCcEEEEEECCCCcEEEccc-CCCccCccEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 9999998765331 34568998877764333332 12334567899999999987644322 7888888765
Q ss_pred eeEEeC-CcCeeEEEECCCCCeEEEEecCCC------CCeEEEEEccCCEEEEEeeCCCceEEEECCCCCEEEEEEcCCc
Q 013871 230 PILELG-SGPYNTVRWNPKGKFLCLAGFGNL------PGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPR 302 (434)
Q Consensus 230 ~~~~~~-~~~~~~i~~SP~g~~l~~~~~~~~------~g~i~iwd~~~~~~i~~~~~~~~~~~~wspdg~~l~tas~~pr 302 (434)
....+. .+..+ ..|||||++|+....... ...|++.|+++++..............|||||++|+.++...
T Consensus 312 ~~~rlt~~g~~~-~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~~~~~~p~~SPDG~~I~f~~~~~- 389 (419)
T PRK04043 312 SVEQVVFHGKNN-SSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTANGVNQFPRFSSDGGSIMFIKYLG- 389 (419)
T ss_pred CeEeCccCCCcC-ceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCCCCcCCeEECCCCCEEEEEEccC-
Confidence 554442 22223 589999999988765421 147899999887543333332223489999999999887620
Q ss_pred eeeCCcEEEEeecCceeeee
Q 013871 303 LQIDNGIKIFHHNGSLFFKK 322 (434)
Q Consensus 303 l~~D~~i~iw~~~g~~~~~~ 322 (434)
-...+.+.+++|...+..
T Consensus 390 --~~~~L~~~~l~g~~~~~l 407 (419)
T PRK04043 390 --NQSALGIIRLNYNKSFLF 407 (419)
T ss_pred --CcEEEEEEecCCCeeEEe
Confidence 022366777788754443
No 154
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.60 E-value=4.1e-13 Score=126.72 Aligned_cols=307 Identities=13% Similarity=0.226 Sum_probs=197.8
Q ss_pred eEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCC--CcEEEEec------CCeEEEE
Q 013871 4 LLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSD--EAVACRMA------TNEIQFF 75 (434)
Q Consensus 4 ~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d--~~~la~~~------~~~i~v~ 75 (434)
-+.||-+.+|++-.. ...+.|+++ ++.. .....+.....++....|||- +..||+-. ...+++|
T Consensus 136 ~~k~s~~D~y~ARvv------~~sl~i~e~-t~n~-~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~ 207 (561)
T COG5354 136 VLKFSIDDKYVARVV------GSSLYIHEI-TDNI-EEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRIL 207 (561)
T ss_pred eeeeeecchhhhhhc------cCeEEEEec-CCcc-ccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEE
Confidence 567888888877543 356899986 4322 111111111155667788885 44556542 2489999
Q ss_pred eCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCC---CC--CceEEEEEcCCCCCCCceeeeeecccceeEEEEC
Q 013871 76 DTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESK---GS--PASVQIYACGKDLQSQPLARRSFFRCSTVQLNWN 150 (434)
Q Consensus 76 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~---~~--~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws 150 (434)
.++.........+....-..+.|.+.++.++.......+ .. ...+.|+++... . +......+..+..+.|+
T Consensus 208 sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~---~-i~V~~~~~~pVhdf~W~ 283 (561)
T COG5354 208 SIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITER---S-IPVEKDLKDPVHDFTWE 283 (561)
T ss_pred EccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccc---c-cceeccccccceeeeec
Confidence 998544333333332222346888885544443333222 11 246778887642 2 22111346678899999
Q ss_pred CCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEcc--CCCeEEEEeccc
Q 013871 151 RGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGF--MPASATIFNKKC 228 (434)
Q Consensus 151 ~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~--~~~~v~l~d~~~ 228 (434)
|.++...++... .+.+ +-..++.+.-....+ ++.-+.+-|||.++++++ .|. ..+.+.+||..+
T Consensus 284 p~S~~F~vi~g~-~pa~---------~s~~~lr~Nl~~~~P---e~~rNT~~fsp~~r~il~-agF~nl~gni~i~~~~~ 349 (561)
T COG5354 284 PLSSRFAVISGY-MPAS---------VSVFDLRGNLRFYFP---EQKRNTIFFSPHERYILF-AGFDNLQGNIEIFDPAG 349 (561)
T ss_pred ccCCceeEEecc-cccc---------eeecccccceEEecC---CcccccccccCcccEEEE-ecCCccccceEEeccCC
Confidence 999988776421 1222 222222232111111 455577899999988886 355 335899999865
Q ss_pred cee--EEeCCcCeeEEEECCCCCeEEEEecC---CCCCeEEEEEccCCEEEEEeeCCCceEEEECCCCCEEEEEEcCCce
Q 013871 229 RPI--LELGSGPYNTVRWNPKGKFLCLAGFG---NLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRL 303 (434)
Q Consensus 229 ~~~--~~~~~~~~~~i~~SP~g~~l~~~~~~---~~~g~i~iwd~~~~~~i~~~~~~~~~~~~wspdg~~l~tas~~prl 303 (434)
+-. ..+......-+.|||||+++.++..+ +.|..|.|||+...+.. ..+.+.|.|.|++..+.++.|++
T Consensus 350 rf~~~~~~~~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f------el~~~~W~p~~~~~ttsSs~~~h 423 (561)
T COG5354 350 RFKVAGAFNGLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF------ELTNITWDPSGQYVTTSSSCPKH 423 (561)
T ss_pred ceEEEEEeecCCceEeeccCCceEEEecCCCcccccCcceEEEEecCchhh------hhhhccccCCcccceeeccCCCC
Confidence 433 24444444557899999999886432 24668999998643222 44568999999999999999999
Q ss_pred eeCCcEEEEeecCceeeeeecccceeeEEEcCCCCCCCC
Q 013871 304 QIDNGIKIFHHNGSLFFKKMFDKLFQAEWKPVSPDKFGD 342 (434)
Q Consensus 304 ~~D~~i~iw~~~g~~~~~~~~~~~~~~~w~p~~~~~~~~ 342 (434)
.+.++.++.+..|.+.-........+++|+|.++.+++.
T Consensus 424 ~~~~~~~~~k~~Ga~~~e~~rg~~k~Fa~r~~~p~~lt~ 462 (561)
T COG5354 424 KVEHGYKIFKIAGALYPEEARGGFKNFAWRPEPPSKLTI 462 (561)
T ss_pred ccccccccccccccccChhhhcccceeEEecCCCccCCh
Confidence 999999999999999988888899999999999999986
No 155
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.60 E-value=6.1e-13 Score=118.20 Aligned_cols=255 Identities=16% Similarity=0.267 Sum_probs=160.4
Q ss_pred CcceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCc----EEEEEeecCcCCCCCCeeeecC--CCcEEEEe-cCCeEE
Q 013871 1 MLLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGE----AVYQLFQKNMTKTTWPSIRFSS--DEAVACRM-ATNEIQ 73 (434)
Q Consensus 1 ~V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~----~~~~~~~~~~~~~~~~~~~~S~--d~~~la~~-~~~~i~ 73 (434)
+|.++.|.+.|+.++|++ .|+.|+|||..+.. +......+.. ..| .+.|.+ =|+.+|++ .|.++.
T Consensus 15 lihdVs~D~~GRRmAtCS-----sDq~vkI~d~~~~s~~W~~Ts~Wrah~~--Si~-rV~WAhPEfGqvvA~cS~Drtv~ 86 (361)
T KOG2445|consen 15 LIHDVSFDFYGRRMATCS-----SDQTVKIWDSTSDSGTWSCTSSWRAHDG--SIW-RVVWAHPEFGQVVATCSYDRTVS 86 (361)
T ss_pred eeeeeeecccCceeeecc-----CCCcEEEEeccCCCCceEEeeeEEecCC--cEE-EEEecCccccceEEEEecCCcee
Confidence 578999999999999999 89999999964432 2334444432 556 889976 57899988 578999
Q ss_pred EEeCCC--CCC-c-ee---eeee--cCCeeEEEEeCCCC-CeEEEEecCCCCCCceEEEEEcCCCCCCCceeee------
Q 013871 74 FFDTTD--FPK-G-IL---YRLR--VPGVAAFEVSKAPG-SHVAVFVPESKGSPASVQIYACGKDLQSQPLARR------ 137 (434)
Q Consensus 74 v~~~~~--~~~-~-~~---~~~~--~~~v~~~~~sp~~~-~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~------ 137 (434)
||+-.. .+. + .- ..+. -..|.++.|+|..- ..+|. .+.+|.+|||+.++. -.+.+.
T Consensus 87 iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~-----~~aDG~lRIYEA~dp---~nLs~W~Lq~Ei 158 (361)
T KOG2445|consen 87 IWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAA-----ASADGILRIYEAPDP---MNLSQWTLQHEI 158 (361)
T ss_pred eeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEE-----eccCcEEEEEecCCc---cccccchhhhhh
Confidence 998632 111 0 11 1111 23699999999743 23332 356789999998762 222221
Q ss_pred -------eecccceeEEEECCCC---CeEEEEEEecccccCceeecceeEEEEeeCCcce-eeeec-CCCCCeEEEEECc
Q 013871 138 -------SFFRCSTVQLNWNRGS---TGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHE-GLVPL-RKEGPVHDVQWSY 205 (434)
Q Consensus 138 -------~~~~~~~~~~~ws~~G---~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~-~~v~l-~~~~~i~~v~wsp 205 (434)
..+.....++.|++.- ..|++....+....++. .||-.+-.+.+- ..-.| ++..||++++|.|
T Consensus 159 ~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~-----~Iye~~e~~rKw~kva~L~d~~dpI~di~wAP 233 (361)
T KOG2445|consen 159 QNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKV-----KIYEYNENGRKWLKVAELPDHTDPIRDISWAP 233 (361)
T ss_pred hhccCCcccccCcceEEeeccccccCceEEEEcccCCccccce-----EEEEecCCcceeeeehhcCCCCCcceeeeecc
Confidence 1244556789999742 23444332222223332 244433333111 11112 4688999999999
Q ss_pred C-CCE-EEEEEccCCCeEEEEeccc---------------------ceeEEe--CCcCeeEEEECCCCCeEEEEecCCCC
Q 013871 206 S-GSE-FAVVYGFMPASATIFNKKC---------------------RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLP 260 (434)
Q Consensus 206 d-g~~-~av~~g~~~~~v~l~d~~~---------------------~~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~ 260 (434)
+ |+. -.+..+..|| |+||.++. +.+.++ |.+.+-.+.|+=.|..|++.| .|
T Consensus 234 n~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStG---dD 309 (361)
T KOG2445|consen 234 NIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTG---DD 309 (361)
T ss_pred ccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecC---CC
Confidence 6 332 2222466677 99998752 112223 778999999999999999988 77
Q ss_pred CeEEEEEcc---CCEEEEEeeCC
Q 013871 261 GDMAFWDYV---DGKQLGTTRAE 280 (434)
Q Consensus 261 g~i~iwd~~---~~~~i~~~~~~ 280 (434)
|.|++|-.. ..+++..+...
T Consensus 310 G~VRLWkany~n~~kC~sv~~~e 332 (361)
T KOG2445|consen 310 GCVRLWKANYNNLWKCTSVLKAE 332 (361)
T ss_pred ceeeehhhhhhhhheeeeEEecc
Confidence 899999743 33666666654
No 156
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.60 E-value=1.9e-13 Score=122.20 Aligned_cols=261 Identities=15% Similarity=0.200 Sum_probs=162.2
Q ss_pred eeeecCCCcEEEEe-cCCeEEEEeCCCCC--Cc--------eeeeee---cCCeeEEEEeCCC---CCeEEEEecCCCCC
Q 013871 54 SIRFSSDEAVACRM-ATNEIQFFDTTDFP--KG--------ILYRLR---VPGVAAFEVSKAP---GSHVAVFVPESKGS 116 (434)
Q Consensus 54 ~~~~S~d~~~la~~-~~~~i~v~~~~~~~--~~--------~~~~~~---~~~v~~~~~sp~~---~~~ia~~~~~~~~~ 116 (434)
...|||||..|++. .++.+++|+++... .. ....++ .+-|.++.|-|-- .+.-.+|.. ...
T Consensus 54 gckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~--ssr 131 (406)
T KOG2919|consen 54 GCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAV--SSR 131 (406)
T ss_pred cceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeee--ccc
Confidence 56899999988776 57899999986421 10 001111 1235555554310 111111211 123
Q ss_pred CceEEEEEcCCCCCCCceeeeeecc-----cceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEee-CCcceeee
Q 013871 117 PASVQIYACGKDLQSQPLARRSFFR-----CSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTT-DGTHEGLV 190 (434)
Q Consensus 117 ~~~v~i~~~~~~~~~~~i~~~~~~~-----~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~-~~~~~~~v 190 (434)
..-|.+|+.-+ ++.-+....+. ....++.|+|||..|... ...+ |..+++ ..+..+.+
T Consensus 132 ~~PIh~wdaft---G~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG----ykrc---------irvFdt~RpGr~c~v 195 (406)
T KOG2919|consen 132 DQPIHLWDAFT---GKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG----YKRC---------IRVFDTSRPGRDCPV 195 (406)
T ss_pred cCceeeeeccc---cccccchhhhhhHHhhhhheeEEecCCCCeEeec----ccce---------EEEeeccCCCCCCcc
Confidence 34578888766 44433333322 123578999999998653 1122 333333 11122222
Q ss_pred --ecCC-----CCCeEEEEECcCCC-EEEEEEccCCCeEEEEec-ccceeEEe--CCcCeeEEEECCCCCeEEEEecCCC
Q 013871 191 --PLRK-----EGPVHDVQWSYSGS-EFAVVYGFMPASATIFNK-KCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNL 259 (434)
Q Consensus 191 --~l~~-----~~~i~~v~wspdg~-~~av~~g~~~~~v~l~d~-~~~~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~ 259 (434)
++.+ .+-|.+++|+|... .+++ |.-...+-||.- ...++..+ |.+.|+.++|.++|+.|.+|+.-
T Consensus 196 y~t~~~~k~gq~giisc~a~sP~~~~~~a~--gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk-- 271 (406)
T KOG2919|consen 196 YTTVTKGKFGQKGIISCFAFSPMDSKTLAV--GSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARK-- 271 (406)
T ss_pred hhhhhcccccccceeeeeeccCCCCcceee--ecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccC--
Confidence 2222 57888999999654 5664 444557778765 34555555 68899999999999999988753
Q ss_pred CCeEEEEEccCC-EEEEEeeCC-----CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecC--c--eeeeeeccccee
Q 013871 260 PGDMAFWDYVDG-KQLGTTRAE-----CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG--S--LFFKKMFDKLFQ 329 (434)
Q Consensus 260 ~g~i~iwd~~~~-~~i~~~~~~-----~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g--~--~~~~~~~~~~~~ 329 (434)
+-.|..||++.. ..+..+..| .-+.+...|+|++|+++++ |+.|++||..+ . .++....+.+..
T Consensus 272 ~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~t------dG~V~vwdlk~~gn~~sv~~~~sd~vNg 345 (406)
T KOG2919|consen 272 DDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDT------DGSVRVWDLKDLGNEVSVTGNYSDTVNG 345 (406)
T ss_pred CCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCC------CccEEEEecCCCCCcccccccccccccc
Confidence 468999999865 445555444 1233788999999999999 99999999965 3 334445567888
Q ss_pred eEEEcCCCCCCCC
Q 013871 330 AEWKPVSPDKFGD 342 (434)
Q Consensus 330 ~~w~p~~~~~~~~ 342 (434)
|+.+|--|.+...
T Consensus 346 vslnP~mpilats 358 (406)
T KOG2919|consen 346 VSLNPIMPILATS 358 (406)
T ss_pred eecCcccceeeec
Confidence 8888875554443
No 157
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=4.7e-14 Score=131.53 Aligned_cols=220 Identities=12% Similarity=0.164 Sum_probs=145.7
Q ss_pred CcceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCC
Q 013871 1 MLLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTD 79 (434)
Q Consensus 1 ~V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~ 79 (434)
.|.||+-+|+|.||+... ..++|.+|.+.+|..+..+..+ -..++|+.||.||++|.+++ |+.|++|.+.+
T Consensus 83 ~v~al~s~n~G~~l~ag~-----i~g~lYlWelssG~LL~v~~aH---YQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~ 154 (476)
T KOG0646|consen 83 PVHALASSNLGYFLLAGT-----ISGNLYLWELSSGILLNVLSAH---YQSITCLKFSDDGSHIITGSKDGAVLVWLLTD 154 (476)
T ss_pred ceeeeecCCCceEEEeec-----ccCcEEEEEeccccHHHHHHhh---ccceeEEEEeCCCcEEEecCCCccEEEEEEEe
Confidence 378999999999999765 5689999999999988877443 27888999999999999985 67999999733
Q ss_pred C-------CCcee--eeeecCCeeEEEEeCCC-CCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEE
Q 013871 80 F-------PKGIL--YRLRVPGVAAFEVSKAP-GSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNW 149 (434)
Q Consensus 80 ~-------~~~~~--~~~~~~~v~~~~~sp~~-~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~w 149 (434)
. ..... ..-|.-.|+++...+++ +..+. +.+.+..+++|++.. +..+.+..|
T Consensus 155 lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~-----TaS~D~t~k~wdlS~---g~LLlti~f---------- 216 (476)
T KOG0646|consen 155 LVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLY-----TASEDRTIKLWDLSL---GVLLLTITF---------- 216 (476)
T ss_pred ecccccCCCccceeeeccCcceeEEEEecCCCccceEE-----EecCCceEEEEEecc---ceeeEEEec----------
Confidence 1 11111 11223358888888874 22332 246678999999976 322222221
Q ss_pred CCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEec---
Q 013871 150 NRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNK--- 226 (434)
Q Consensus 150 s~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~--- 226 (434)
..++++++..|-++.+.+ |..+++|.+.++
T Consensus 217 ---------------------------------------------p~si~av~lDpae~~~yi--Gt~~G~I~~~~~~~~ 249 (476)
T KOG0646|consen 217 ---------------------------------------------PSSIKAVALDPAERVVYI--GTEEGKIFQNLLFKL 249 (476)
T ss_pred ---------------------------------------------CCcceeEEEcccccEEEe--cCCcceEEeeehhcC
Confidence 223444444444444442 444444444432
Q ss_pred --------------ccceeEEe--CCc--CeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC--CCceEEE
Q 013871 227 --------------KCRPILEL--GSG--PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA--ECSVTSE 286 (434)
Q Consensus 227 --------------~~~~~~~~--~~~--~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~--~~~~~~~ 286 (434)
...++..+ |.+ .|+|+++|-||.+|++|+ .+|++.|||+.+.++++++.. ..++.+.
T Consensus 250 ~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd---~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~ 326 (476)
T KOG0646|consen 250 SGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGD---EDGKVCVWDIYSKQCIRTLQTSKGPVTNLQ 326 (476)
T ss_pred CcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeC---CCCCEEEEecchHHHHHHHhhhccccceeE
Confidence 11112222 444 899999999999999998 678999999999988877762 2455577
Q ss_pred ECCCCCEEEE
Q 013871 287 WSPDGRYFMT 296 (434)
Q Consensus 287 wspdg~~l~t 296 (434)
+.|=-+-++.
T Consensus 327 i~~~~~~~~l 336 (476)
T KOG0646|consen 327 INPLERGIIL 336 (476)
T ss_pred eeccccceec
Confidence 7554333333
No 158
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.60 E-value=1e-13 Score=123.45 Aligned_cols=274 Identities=12% Similarity=0.161 Sum_probs=175.2
Q ss_pred CCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeC------CCCCCceeeeeecCCeeEE
Q 013871 24 QEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDT------TDFPKGILYRLRVPGVAAF 96 (434)
Q Consensus 24 ~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~------~~~~~~~~~~~~~~~v~~~ 96 (434)
.|.+.+||.+++|.|+.+|.++- ..+.++.|++.+.++++++ |++-+||.. +...... ....+ ...
T Consensus 168 ADhTA~iWs~Esg~CL~~Y~GH~---GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~--~hSsE--eE~ 240 (481)
T KOG0300|consen 168 ADHTARIWSLESGACLATYTGHT---GSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPS--DHSSE--EEE 240 (481)
T ss_pred cccceeEEeeccccceeeecccc---cceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCC--CCCch--hhh
Confidence 78999999999999999998854 7888999999999999985 569999983 2211000 00000 000
Q ss_pred EEeCCCCCeEEEEecCCCCCC-ceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecce
Q 013871 97 EVSKAPGSHVAVFVPESKGSP-ASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGES 175 (434)
Q Consensus 97 ~~sp~~~~~ia~~~~~~~~~~-~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~ 175 (434)
.-| +....- ...+...+ -+| .-++..++.|.+.+....|-..|+.++.. .-|.+-.
T Consensus 241 e~s-De~~~d---~d~~~~sD~~ti----------RvPl~~ltgH~~vV~a~dWL~gg~Q~vTa---SWDRTAn------ 297 (481)
T KOG0300|consen 241 EHS-DEHNRD---TDSSEKSDGHTI----------RVPLMRLTGHRAVVSACDWLAGGQQMVTA---SWDRTAN------ 297 (481)
T ss_pred hcc-cccccc---cccccccCCcee----------eeeeeeeeccccceEehhhhcCcceeeee---eccccce------
Confidence 001 000000 00000000 011 34566677788888888999988886432 2344443
Q ss_pred eEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc----cceeEEeCCcCeeEEEECCCCCeE
Q 013871 176 KLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK----CRPILELGSGPYNTVRWNPKGKFL 251 (434)
Q Consensus 176 ~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~----~~~~~~~~~~~~~~i~~SP~g~~l 251 (434)
||.++ .+........++.....++-+|+-+.++ +.+.|.+.++||.+ ...+++-|...++++.|.-+.+.
T Consensus 298 -lwDVE--tge~v~~LtGHd~ELtHcstHptQrLVv--TsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~v- 371 (481)
T KOG0300|consen 298 -LWDVE--TGEVVNILTGHDSELTHCSTHPTQRLVV--TSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDRV- 371 (481)
T ss_pred -eeeec--cCceeccccCcchhccccccCCcceEEE--EeccCceeEeccchhhcceeeeecccccceeEEEEecCCce-
Confidence 44442 2211111223456677778788654444 67888999999997 22345558999999999987654
Q ss_pred EEEecCCCCCeEEEEEccCCE-EEEEeeCC-CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceeeeee------
Q 013871 252 CLAGFGNLPGDMAFWDYVDGK-QLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKKM------ 323 (434)
Q Consensus 252 ~~~~~~~~~g~i~iwd~~~~~-~i~~~~~~-~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~~~~~~------ 323 (434)
++|+ .|.+|+|||+++++ .+.++... .+..++.|-.+..|+.-.. ...|+|||++|..+...+
T Consensus 372 VSgS---DDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhD------NRqvRlfDlnG~RlaRlPrtsRqg 442 (481)
T KOG0300|consen 372 VSGS---DDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHD------NRQVRLFDLNGNRLARLPRTSRQG 442 (481)
T ss_pred eecC---CCceEEEeeeccccCcceeeecCCccceeEeecCCceEEeccC------CceEEEEecCCCccccCCcccccc
Confidence 4555 44699999999874 56666544 4445888887777777665 678999999998776553
Q ss_pred -cccceeeEEEcCCC--CCCCC
Q 013871 324 -FDKLFQAEWKPVSP--DKFGD 342 (434)
Q Consensus 324 -~~~~~~~~w~p~~~--~~~~~ 342 (434)
...+.+++|..+.+ .||.-
T Consensus 443 HrRMV~c~AW~eehp~cnLftc 464 (481)
T KOG0300|consen 443 HRRMVTCCAWLEEHPACNLFTC 464 (481)
T ss_pred cceeeeeeeccccCcccccccc
Confidence 23588999987665 34543
No 159
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=7.6e-13 Score=128.68 Aligned_cols=310 Identities=15% Similarity=0.132 Sum_probs=188.3
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeec--Cc----CCCCCCeeeecCCCcEEEEecCCeEEEE
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQK--NM----TKTTWPSIRFSSDEAVACRMATNEIQFF 75 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~--~~----~~~~~~~~~~S~d~~~la~~~~~~i~v~ 75 (434)
|.+|+|+|+|..|++++ .|+.|++||+.++..++..... .. ..-.| ++.|-.|+.+++.-+.|+|++|
T Consensus 157 vLslsw~~~~~~i~~Gs-----~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVW-Sv~~Lrd~tI~sgDS~G~V~FW 230 (691)
T KOG2048|consen 157 VLSLSWNPTGTKIAGGS-----IDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVW-SVLFLRDSTIASGDSAGTVTFW 230 (691)
T ss_pred EEEEEecCCccEEEecc-----cCceEEEEEcCCCceEEEeeecccccccCCceEEE-EEEEeecCcEEEecCCceEEEE
Confidence 67899999999999988 8999999999999887722211 10 11224 4555556655544467999999
Q ss_pred eCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCC---ceeeeeecccceeEEEECCC
Q 013871 76 DTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQ---PLARRSFFRCSTVQLNWNRG 152 (434)
Q Consensus 76 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~---~i~~~~~~~~~~~~~~ws~~ 152 (434)
|...+........+...|.+++.+++++..+. .|.++.+..|..... .. ....+.+|..++.++.-.++
T Consensus 231 d~~~gTLiqS~~~h~adVl~Lav~~~~d~vfs------aGvd~~ii~~~~~~~--~~~wv~~~~r~~h~hdvrs~av~~~ 302 (691)
T KOG2048|consen 231 DSIFGTLIQSHSCHDADVLALAVADNEDRVFS------AGVDPKIIQYSLTTN--KSEWVINSRRDLHAHDVRSMAVIEN 302 (691)
T ss_pred cccCcchhhhhhhhhcceeEEEEcCCCCeEEE------ccCCCceEEEEecCC--ccceeeeccccCCcccceeeeeecc
Confidence 99887776777788888999999988544332 355555555555431 11 12334455555555543332
Q ss_pred -----CC-eEEEEEEecccc-------------cCceeecceeE-----------EEEeeC-------CcceeeeecCCC
Q 013871 153 -----ST-GLLAVAQSDVDK-------------TNQSYYGESKL-----------NYLTTD-------GTHEGLVPLRKE 195 (434)
Q Consensus 153 -----G~-~l~~~~~~~~d~-------------~~~~~~g~~~l-----------~~l~~~-------~~~~~~v~l~~~ 195 (434)
|. ..+++.....++ ...+--++..| |.+... -.+-..+.+...
T Consensus 303 ~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~ 382 (691)
T KOG2048|consen 303 ALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEK 382 (691)
T ss_pred eEEecceeeEEEEccccccCchhhhccccccccceeecCccceEEEEeccccccceeccCcccccccChhhheeeecCCc
Confidence 11 111111110000 00011112222 222111 011122334446
Q ss_pred CCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeEE---e-----CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEE
Q 013871 196 GPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILE---L-----GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWD 267 (434)
Q Consensus 196 ~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~---~-----~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd 267 (434)
.-|.+.+.||+|+.+++- +...++||.++...... . .......+.|+-|+..+++.+. ..+.+.+++
T Consensus 383 ~nIs~~aiSPdg~~Ia~s---t~~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~--~~~~le~~e 457 (691)
T KOG2048|consen 383 ENISCAAISPDGNLIAIS---TVSRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSK--NIFSLEEFE 457 (691)
T ss_pred cceeeeccCCCCCEEEEe---eccceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEec--ccceeEEEE
Confidence 678899999999999963 35588899876432111 1 2345677899999998887772 346888888
Q ss_pred ccCC--EEEEEe----eCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceeeeee---cccceeeEEEcCC
Q 013871 268 YVDG--KQLGTT----RAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKKM---FDKLFQAEWKPVS 336 (434)
Q Consensus 268 ~~~~--~~i~~~----~~~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~~~~~~---~~~~~~~~w~p~~ 336 (434)
.++. +.+..+ ..+.+..+.-||||+||+++++ ++.|.+|++.+...+... .-.+..++++|..
T Consensus 458 l~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t------~g~I~v~nl~~~~~~~l~~rln~~vTa~~~~~~~ 529 (691)
T KOG2048|consen 458 LETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAIST------RGQIFVYNLETLESHLLKVRLNIDVTAAAFSPFV 529 (691)
T ss_pred ecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEec------cceEEEEEcccceeecchhccCcceeeeeccccc
Confidence 7754 333322 2235666999999999999999 999999999876443321 1345556666543
No 160
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.59 E-value=6e-15 Score=143.94 Aligned_cols=249 Identities=10% Similarity=0.143 Sum_probs=179.2
Q ss_pred CCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCC-eEEEEeCCCCCCceeeee
Q 013871 10 VGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATN-EIQFFDTTDFPKGILYRL 88 (434)
Q Consensus 10 ~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~-~i~v~~~~~~~~~~~~~~ 88 (434)
-+-+++... .+-.++|||.....+ + ...+.++..-..++.+++++.. .+.+|....+......+.
T Consensus 3 ~~~~~m~~~-----~~t~Lr~~~~~~~~~------h---saav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~ 68 (825)
T KOG0267|consen 3 GMEFLMKTK-----RATKLRVWDTREFVA------H---SAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTG 68 (825)
T ss_pred cccccceee-----eeeccccccchhhhh------h---hhhhceeeeeccceeeccCCCceeeccccccCCchhheeec
Confidence 344455444 346788888643221 1 1333355555567778877654 666999877665455678
Q ss_pred ecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccC
Q 013871 89 RVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTN 168 (434)
Q Consensus 89 ~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~ 168 (434)
|...|.++.|++. ..+|+ .+...+.|++||+.. ...++++..|..+.+.+.|+|-|.+. ++...|...
T Consensus 69 hespIeSl~f~~~-E~Lla-----agsasgtiK~wDlee---Ak~vrtLtgh~~~~~sv~f~P~~~~~---a~gStdtd~ 136 (825)
T KOG0267|consen 69 HESPIESLTFDTS-ERLLA-----AGSASGTIKVWDLEE---AKIVRTLTGHLLNITSVDFHPYGEFF---ASGSTDTDL 136 (825)
T ss_pred cCCcceeeecCcc-hhhhc-----ccccCCceeeeehhh---hhhhhhhhccccCcceeeeccceEEe---ccccccccc
Confidence 8889999999997 34443 245678999999998 78889999999999999999998875 323233333
Q ss_pred ceeecceeEEEEeeCCcceeeeecC-CCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-cceeEEe--CCcCeeEEEE
Q 013871 169 QSYYGESKLNYLTTDGTHEGLVPLR-KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL--GSGPYNTVRW 244 (434)
Q Consensus 169 ~~~~g~~~l~~l~~~~~~~~~v~l~-~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~-~~~~~~~--~~~~~~~i~~ 244 (434)
+.|.+. -.| |..... +...+..+.|+|+|++++ .|..|..+.+||+. ++.+.+| |.+.+..+.|
T Consensus 137 ~iwD~R-------k~G---c~~~~~s~~~vv~~l~lsP~Gr~v~--~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~ 204 (825)
T KOG0267|consen 137 KIWDIR-------KKG---CSHTYKSHTRVVDVLRLSPDGRWVA--SGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEF 204 (825)
T ss_pred eehhhh-------ccC---ceeeecCCcceeEEEeecCCCceee--ccCCcceeeeeccccccccccccccccccccccc
Confidence 333222 111 111111 256788899999999999 58889999999995 5555566 7889999999
Q ss_pred CCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEc
Q 013871 245 NPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATT 299 (434)
Q Consensus 245 SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~ 299 (434)
+|..-+++.|+ .++++.|||+++.+.|...... .+....|+|||+.++++..
T Consensus 205 hp~e~Lla~Gs---~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q 258 (825)
T KOG0267|consen 205 HPLEVLLAPGS---SDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQ 258 (825)
T ss_pred CchhhhhccCC---CCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCch
Confidence 99988888888 6679999999999998876554 6667999999999988764
No 161
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=1.2e-12 Score=130.40 Aligned_cols=244 Identities=13% Similarity=0.103 Sum_probs=150.5
Q ss_pred eEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEEC
Q 013871 71 EIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWN 150 (434)
Q Consensus 71 ~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws 150 (434)
+|.++|...... .....+...+....|||+ +..|++...+. ....|.+|++.+ +.. .....+......+.|+
T Consensus 180 ~l~~~d~~g~~~-~~l~~~~~~~~~p~wSpD-G~~la~~s~~~--~~~~l~~~~l~~---g~~-~~l~~~~g~~~~~~~S 251 (430)
T PRK00178 180 TLQRSDYDGARA-VTLLQSREPILSPRWSPD-GKRIAYVSFEQ--KRPRIFVQNLDT---GRR-EQITNFEGLNGAPAWS 251 (430)
T ss_pred EEEEECCCCCCc-eEEecCCCceeeeeECCC-CCEEEEEEcCC--CCCEEEEEECCC---CCE-EEccCCCCCcCCeEEC
Confidence 577777765332 222223345788999999 56665543332 234788888865 322 2233333344568999
Q ss_pred CCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccC-CCeEEEEecccc
Q 013871 151 RGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFM-PASATIFNKKCR 229 (434)
Q Consensus 151 ~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~-~~~v~l~d~~~~ 229 (434)
|||+.|++..+.+ |...||.++..+.....+. ...+......|+|||+.+++.+... ...|.++|+.+.
T Consensus 252 pDG~~la~~~~~~---------g~~~Iy~~d~~~~~~~~lt-~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g 321 (430)
T PRK00178 252 PDGSKLAFVLSKD---------GNPEIYVMDLASRQLSRVT-NHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGG 321 (430)
T ss_pred CCCCEEEEEEccC---------CCceEEEEECCCCCeEEcc-cCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 9999988764322 2345888887765433322 2234556789999999998764321 236777787654
Q ss_pred eeEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceEEEECCCCCEEEEEEcCCceeeCC
Q 013871 230 PILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDN 307 (434)
Q Consensus 230 ~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~~~wspdg~~l~tas~~prl~~D~ 307 (434)
....+ .........|||||++|+.....+....|.++|+.+++..............|||||++|+.++.... ..
T Consensus 322 ~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~~~~p~~spdg~~i~~~~~~~g---~~ 398 (430)
T PRK00178 322 RAERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDTSLDESPSVAPNGTMLIYATRQQG---RG 398 (430)
T ss_pred CEEEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccCCCCCCCceECCCCCEEEEEEecCC---ce
Confidence 44333 22233457899999999887754333468999998875433333222234799999999998886210 12
Q ss_pred cEEEEeecCceeeee--ecccceeeEEEcC
Q 013871 308 GIKIFHHNGSLFFKK--MFDKLFQAEWKPV 335 (434)
Q Consensus 308 ~i~iw~~~g~~~~~~--~~~~~~~~~w~p~ 335 (434)
.+.+++.+|...... ...++....|+|.
T Consensus 399 ~l~~~~~~g~~~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 399 VLMLVSINGRVRLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred EEEEEECCCCceEECcCCCCCcCCCccCCC
Confidence 467777788755433 2245677777764
No 162
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.59 E-value=3.9e-13 Score=130.92 Aligned_cols=287 Identities=14% Similarity=0.155 Sum_probs=181.9
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcC-CCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC-CeEEEEeCCC
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTE-TGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT-NEIQFFDTTD 79 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~-~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~-~~i~v~~~~~ 79 (434)
|+.++|+|.|.||++.+ .|.+-+|+--- ....-+.+...+.|.....|++|-+....++++.+ .-+++|+.+.
T Consensus 364 V~dv~W~psGeflLsvs-----~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk 438 (764)
T KOG1063|consen 364 VKDVDWDPSGEFLLSVS-----LDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPK 438 (764)
T ss_pred ceeeeecCCCCEEEEec-----cccceeeecccccccceeeecccccccccceeeehccCCceeeecccceeeeeecCcH
Confidence 67899999999999999 88888888643 11223344434445566778888875555555655 5788888521
Q ss_pred -------------C-CC--------cee--------e-------------------------------------------
Q 013871 80 -------------F-PK--------GIL--------Y------------------------------------------- 86 (434)
Q Consensus 80 -------------~-~~--------~~~--------~------------------------------------------- 86 (434)
+ +. ... .
T Consensus 439 ~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv 518 (764)
T KOG1063|consen 439 SFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEV 518 (764)
T ss_pred HHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhh
Confidence 0 00 000 0
Q ss_pred ---eeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEec
Q 013871 87 ---RLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSD 163 (434)
Q Consensus 87 ---~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~ 163 (434)
..|.-.|.+++.+|+ ++.+|.....+.-.-+.|+||+..+ =..+..+.+|.-.+..+.|||||++|+...
T Consensus 519 ~KLYGHGyEv~~l~~s~~-gnliASaCKS~~~ehAvI~lw~t~~---W~~~~~L~~HsLTVT~l~FSpdg~~LLsvs--- 591 (764)
T KOG1063|consen 519 HKLYGHGYEVYALAISPT-GNLIASACKSSLKEHAVIRLWNTAN---WLQVQELEGHSLTVTRLAFSPDGRYLLSVS--- 591 (764)
T ss_pred HHhccCceeEEEEEecCC-CCEEeehhhhCCccceEEEEEeccc---hhhhheecccceEEEEEEECCCCcEEEEee---
Confidence 001113666777776 5666655444444557899999988 445557888999999999999999986542
Q ss_pred ccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccc---eeEEe----CC
Q 013871 164 VDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR---PILEL----GS 236 (434)
Q Consensus 164 ~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~---~~~~~----~~ 236 (434)
.|.+...|.-..++ .....-...-.|..-|.+..|+|++.+|+ +++.|.+|.+|..... .+..+ ..
T Consensus 592 RDRt~sl~~~~~~~-----~~e~~fa~~k~HtRIIWdcsW~pde~~Fa--TaSRDK~VkVW~~~~~~d~~i~~~a~~~~~ 664 (764)
T KOG1063|consen 592 RDRTVSLYEVQEDI-----KDEFRFACLKAHTRIIWDCSWSPDEKYFA--TASRDKKVKVWEEPDLRDKYISRFACLKFS 664 (764)
T ss_pred cCceEEeeeeeccc-----chhhhhccccccceEEEEcccCcccceeE--EecCCceEEEEeccCchhhhhhhhchhccC
Confidence 56665543211110 01000000112356788999999999988 7889999999966422 22221 46
Q ss_pred cCeeEEEECCCC----CeEEEEecCCCCCeEEEEEccC-------C--EEEEEeeC---C--CceEEEECCC--------
Q 013871 237 GPYNTVRWNPKG----KFLCLAGFGNLPGDMAFWDYVD-------G--KQLGTTRA---E--CSVTSEWSPD-------- 290 (434)
Q Consensus 237 ~~~~~i~~SP~g----~~l~~~~~~~~~g~i~iwd~~~-------~--~~i~~~~~---~--~~~~~~wspd-------- 290 (434)
..++.++|.|-- ..++..|.. .|.|.+|.... + ........ + .+..+.|+|.
T Consensus 665 ~aVTAv~~~~~~~~e~~~~vavGle--~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~ 742 (764)
T KOG1063|consen 665 LAVTAVAYLPVDHNEKGDVVAVGLE--KGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVED 742 (764)
T ss_pred CceeeEEeeccccccccceEEEEec--ccEEEEEecccccccccceeeeeccccccccChHHhhheeEeccccccccccc
Confidence 788999987732 235566654 49999998551 1 11111111 1 4455999976
Q ss_pred --CCEEEEEEcCCceeeCCcEEEEeec
Q 013871 291 --GRYFMTATTAPRLQIDNGIKIFHHN 315 (434)
Q Consensus 291 --g~~l~tas~~prl~~D~~i~iw~~~ 315 (434)
...|++|+. |..+||++++
T Consensus 743 ~~~l~la~~g~------D~~vri~nv~ 763 (764)
T KOG1063|consen 743 KEWLNLAVGGD------DESVRIFNVD 763 (764)
T ss_pred cceeEEeeecc------cceeEEeecc
Confidence 346799999 9999999864
No 163
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=1.6e-12 Score=126.54 Aligned_cols=267 Identities=11% Similarity=0.121 Sum_probs=174.2
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCC
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFP 81 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~ 81 (434)
|.+|+||.+.+.||... .|++|-||++..+=....+.... ....+..++|++.++++-.+.+++|..||+.+..
T Consensus 28 I~slA~s~kS~~lAvsR-----t~g~IEiwN~~~~w~~~~vi~g~-~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk 101 (691)
T KOG2048|consen 28 IVSLAYSHKSNQLAVSR-----TDGNIEIWNLSNNWFLEPVIHGP-EDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLK 101 (691)
T ss_pred eEEEEEeccCCceeeec-----cCCcEEEEccCCCceeeEEEecC-CCCceeeEEEccCCeEEeecCCceEEEEecccCc
Confidence 78999999999999876 89999999998875444333221 2256778999999999988899999999998865
Q ss_pred CceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeec--ccceeEEEECCCCCeEEEE
Q 013871 82 KGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFF--RCSTVQLNWNRGSTGLLAV 159 (434)
Q Consensus 82 ~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~--~~~~~~~~ws~~G~~l~~~ 159 (434)
...........|.+++.+|. ...+++- ..+|.+..++... +.....+.+. +..+.++.|+|+|..|+..
T Consensus 102 ~~~~~d~~gg~IWsiai~p~-~~~l~Ig-----cddGvl~~~s~~p---~~I~~~r~l~rq~sRvLslsw~~~~~~i~~G 172 (691)
T KOG2048|consen 102 QKYNIDSNGGAIWSIAINPE-NTILAIG-----CDDGVLYDFSIGP---DKITYKRSLMRQKSRVLSLSWNPTGTKIAGG 172 (691)
T ss_pred eeEEecCCCcceeEEEeCCc-cceEEee-----cCCceEEEEecCC---ceEEEEeecccccceEEEEEecCCccEEEec
Confidence 43333344456889999997 4555542 2345555555544 3333333332 4567899999999987553
Q ss_pred EEecccccCceeecce--eEEEEe--eCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccce---eE
Q 013871 160 AQSDVDKTNQSYYGES--KLNYLT--TDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP---IL 232 (434)
Q Consensus 160 ~~~~~d~~~~~~~g~~--~l~~l~--~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~---~~ 232 (434)
+ .|..++.|.+.. .++.+. +.+... ..+.-|.++.+-.++ .++ +|+.-|.|++||..... -+
T Consensus 173 s---~Dg~Iriwd~~~~~t~~~~~~~~d~l~k-----~~~~iVWSv~~Lrd~-tI~--sgDS~G~V~FWd~~~gTLiqS~ 241 (691)
T KOG2048|consen 173 S---IDGVIRIWDVKSGQTLHIITMQLDRLSK-----REPTIVWSVLFLRDS-TIA--SGDSAGTVTFWDSIFGTLIQSH 241 (691)
T ss_pred c---cCceEEEEEcCCCceEEEeeeccccccc-----CCceEEEEEEEeecC-cEE--EecCCceEEEEcccCcchhhhh
Confidence 2 455455554332 233221 111110 013346677776665 333 58888999999986433 23
Q ss_pred EeCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEE----E--EEeeCCCceEEEECCCCCEEEEEEc
Q 013871 233 ELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQ----L--GTTRAECSVTSEWSPDGRYFMTATT 299 (434)
Q Consensus 233 ~~~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~----i--~~~~~~~~~~~~wspdg~~l~tas~ 299 (434)
..|...+.+++-++++..+.++| .|+.|.-+-..+.+. . ..+..|++-.++..++ .|++|+.
T Consensus 242 ~~h~adVl~Lav~~~~d~vfsaG---vd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~ 309 (691)
T KOG2048|consen 242 SCHDADVLALAVADNEDRVFSAG---VDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGR 309 (691)
T ss_pred hhhhcceeEEEEcCCCCeEEEcc---CCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecce
Confidence 45899999999999999999999 667888777665422 1 1223345555666555 4455444
No 164
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.58 E-value=8e-13 Score=128.79 Aligned_cols=262 Identities=10% Similarity=0.114 Sum_probs=183.0
Q ss_pred ceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEE--EEeecCcCCCCCCe-eeecC--CCcEEEEecCCeEEEEeC
Q 013871 3 LLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVY--QLFQKNMTKTTWPS-IRFSS--DEAVACRMATNEIQFFDT 77 (434)
Q Consensus 3 ~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~--~~~~~~~~~~~~~~-~~~S~--d~~~la~~~~~~i~v~~~ 77 (434)
+.+++-+ +..+++.+ .|++++||+-..++.+. .|.++. .-+.+ ++|-+ .++++..+.|..|.+|..
T Consensus 18 r~v~~~~-~~~i~s~s-----Rd~t~~vw~~~~~~~l~~~~~~~~~---g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~ 88 (745)
T KOG0301|consen 18 RAVAVTD-GVCIISGS-----RDGTVKVWAKKGKQYLETHAFEGPK---GFIANSICYAESDKGRLVVGGMDTTIIVFKL 88 (745)
T ss_pred heeEecC-CeEEeecC-----CCCceeeeeccCcccccceecccCc---ceeeccceeccccCcceEeecccceEEEEec
Confidence 3444444 33455555 68999999976655544 233221 22222 45543 334555556789999999
Q ss_pred CCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEE
Q 013871 78 TDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLL 157 (434)
Q Consensus 78 ~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~ 157 (434)
.........+.|...|.+++.--+ ..+. ++..+.++++|.. ++.......|.+.+-.+..-|++++
T Consensus 89 ~~~~P~~~LkgH~snVC~ls~~~~--~~~i-----SgSWD~TakvW~~-----~~l~~~l~gH~asVWAv~~l~e~~~-- 154 (745)
T KOG0301|consen 89 SQAEPLYTLKGHKSNVCSLSIGED--GTLI-----SGSWDSTAKVWRI-----GELVYSLQGHTASVWAVASLPENTY-- 154 (745)
T ss_pred CCCCchhhhhccccceeeeecCCc--CceE-----ecccccceEEecc-----hhhhcccCCcchheeeeeecCCCcE--
Confidence 987766677778777877654433 2222 3567789999998 4555567788888888887788753
Q ss_pred EEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeEEe--C
Q 013871 158 AVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL--G 235 (434)
Q Consensus 158 ~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~~--~ 235 (434)
.+...|++.+.|.|...+..+ .+ |...|..++.-|++ .|+ +++.|+.|++|++.++.+... |
T Consensus 155 --vTgsaDKtIklWk~~~~l~tf---~g--------HtD~VRgL~vl~~~-~fl--ScsNDg~Ir~w~~~ge~l~~~~gh 218 (745)
T KOG0301|consen 155 --VTGSADKTIKLWKGGTLLKTF---SG--------HTDCVRGLAVLDDS-HFL--SCSNDGSIRLWDLDGEVLLEMHGH 218 (745)
T ss_pred --EeccCcceeeeccCCchhhhh---cc--------chhheeeeEEecCC-CeE--eecCCceEEEEeccCceeeeeecc
Confidence 234478999988775543322 22 37889999998765 455 467899999999998888877 6
Q ss_pred CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEe
Q 013871 236 SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFH 313 (434)
Q Consensus 236 ~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~ 313 (434)
+..+.++...+++..++++| .|++++||+.. ++...+..+ +++++..-++|. |++|++ ||-||||.
T Consensus 219 tn~vYsis~~~~~~~Ivs~g---EDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~S------DG~VrVfT 286 (745)
T KOG0301|consen 219 TNFVYSISMALSDGLIVSTG---EDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGS------DGRVRVFT 286 (745)
T ss_pred ceEEEEEEecCCCCeEEEec---CCceEEEeecC--ceEEEEecCccceEEEEEeeCCC-EEEecc------CceEEEEE
Confidence 78888999888899999998 77899999987 566655555 555566666776 567777 99999998
Q ss_pred ec
Q 013871 314 HN 315 (434)
Q Consensus 314 ~~ 315 (434)
..
T Consensus 287 ~~ 288 (745)
T KOG0301|consen 287 VD 288 (745)
T ss_pred ec
Confidence 75
No 165
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.58 E-value=3.4e-13 Score=135.00 Aligned_cols=246 Identities=14% Similarity=0.165 Sum_probs=172.5
Q ss_pred CCCCeeeecCCCcEEEEecCCeEEEEeCCCCCCcee-eeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCC
Q 013871 50 TTWPSIRFSSDEAVACRMATNEIQFFDTTDFPKGIL-YRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKD 128 (434)
Q Consensus 50 ~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~~~~-~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~ 128 (434)
..+.+.+|. ++.++....+.+|++|+..+...... ...|..+|..+++.-. +..+. ++..+.++++|++.+
T Consensus 209 ~~~~~~q~~-~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~-~~~lv-----sgS~D~t~rvWd~~s- 280 (537)
T KOG0274|consen 209 HVVLCLQLH-DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSG-GDKLV-----SGSTDKTERVWDCST- 280 (537)
T ss_pred chhhhheee-cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecC-CCEEE-----EEecCCcEEeEecCC-
Confidence 555688888 55555555678999999887544333 5567788999988864 33332 234567999999888
Q ss_pred CCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCC
Q 013871 129 LQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGS 208 (434)
Q Consensus 129 ~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~ 208 (434)
++.+.....|...+..+...+ .++ .+...|.+.+.|.-++. ..+.+.++ +.++|+++..+ +.
T Consensus 281 --g~C~~~l~gh~stv~~~~~~~---~~~--~sgs~D~tVkVW~v~n~-~~l~l~~~--------h~~~V~~v~~~--~~ 342 (537)
T KOG0274|consen 281 --GECTHSLQGHTSSVRCLTIDP---FLL--VSGSRDNTVKVWDVTNG-ACLNLLRG--------HTGPVNCVQLD--EP 342 (537)
T ss_pred --CcEEEEecCCCceEEEEEccC---ceE--eeccCCceEEEEeccCc-ceEEEecc--------ccccEEEEEec--CC
Confidence 888888887776666664322 222 22335666665533211 12222221 58999999997 55
Q ss_pred EEEEEEccCCCeEEEEecc-cceeEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC-EEEEEeeCCCceE
Q 013871 209 EFAVVYGFMPASATIFNKK-CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG-KQLGTTRAECSVT 284 (434)
Q Consensus 209 ~~av~~g~~~~~v~l~d~~-~~~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~-~~i~~~~~~~~~~ 284 (434)
.++ +|..|+.|.+||.. .+.++++ |.+.|.++.+.+. ..++.|+ +|+.|++||+.+. +++.++.+|..+.
T Consensus 343 ~lv--sgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs---~D~~IkvWdl~~~~~c~~tl~~h~~~v 416 (537)
T KOG0274|consen 343 LLV--SGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGS---LDTTIKVWDLRTKRKCIHTLQGHTSLV 416 (537)
T ss_pred EEE--EEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeee---eccceEeecCCchhhhhhhhcCCcccc
Confidence 555 68889999999996 4455555 8899999988776 8888888 6679999999999 9999999986666
Q ss_pred EEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceeeeeec---ccceeeEEE
Q 013871 285 SEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKKMF---DKLFQAEWK 333 (434)
Q Consensus 285 ~~wspdg~~l~tas~~prl~~D~~i~iw~~-~g~~~~~~~~---~~~~~~~w~ 333 (434)
-.....+++|++++. |+.|++||. +|+++....- ..+..+.+.
T Consensus 417 ~~l~~~~~~Lvs~~a------D~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~ 463 (537)
T KOG0274|consen 417 SSLLLRDNFLVSSSA------DGTIKLWDAEEGECLRTLEGRHVGGVSALALG 463 (537)
T ss_pred cccccccceeEeccc------cccEEEeecccCceeeeeccCCcccEEEeecC
Confidence 666778899999999 999999998 4555555433 334444444
No 166
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.57 E-value=2.3e-12 Score=128.44 Aligned_cols=238 Identities=13% Similarity=0.121 Sum_probs=145.6
Q ss_pred CcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec--C--CeEEEEeCCCCCCceeeeee-cC-CeeEEEEe
Q 013871 26 KNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA--T--NEIQFFDTTDFPKGILYRLR-VP-GVAAFEVS 99 (434)
Q Consensus 26 ~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~--~--~~i~v~~~~~~~~~~~~~~~-~~-~v~~~~~s 99 (434)
..|.++|..... .+.+.... ..+..+.|||||+.|+... + ..|.+||+..... ..+. .. ....+.||
T Consensus 198 ~~l~i~d~dG~~-~~~l~~~~---~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~---~~lt~~~g~~~~~~wS 270 (448)
T PRK04792 198 YQLMIADYDGYN-EQMLLRSP---EPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVR---EKVTSFPGINGAPRFS 270 (448)
T ss_pred eEEEEEeCCCCC-ceEeecCC---CcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCe---EEecCCCCCcCCeeEC
Confidence 468888865443 34443332 4555789999999998863 2 2688888866432 1222 22 23578999
Q ss_pred CCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEE
Q 013871 100 KAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNY 179 (434)
Q Consensus 100 p~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~ 179 (434)
|+ +..+++..... ....|.++++.+ + .+..++.+........|+|||+.|++.... . +...||.
T Consensus 271 PD-G~~La~~~~~~--g~~~Iy~~dl~t---g-~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~----~-----g~~~Iy~ 334 (448)
T PRK04792 271 PD-GKKLALVLSKD--GQPEIYVVDIAT---K-ALTRITRHRAIDTEPSWHPDGKSLIFTSER----G-----GKPQIYR 334 (448)
T ss_pred CC-CCEEEEEEeCC--CCeEEEEEECCC---C-CeEECccCCCCccceEECCCCCEEEEEECC----C-----CCceEEE
Confidence 99 55555433221 224566677654 2 334444444455678999999998775321 1 2346888
Q ss_pred EeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCC--eEEEEecccceeEEeCCc-CeeEEEECCCCCeEEEEec
Q 013871 180 LTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPA--SATIFNKKCRPILELGSG-PYNTVRWNPKGKFLCLAGF 256 (434)
Q Consensus 180 l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~--~v~l~d~~~~~~~~~~~~-~~~~i~~SP~g~~l~~~~~ 256 (434)
++..++....++.. .......+|+|||+.+++.... .+ .|.++|+.+.....+... ......|+|||++|+....
T Consensus 335 ~dl~~g~~~~Lt~~-g~~~~~~~~SpDG~~l~~~~~~-~g~~~I~~~dl~~g~~~~lt~~~~d~~ps~spdG~~I~~~~~ 412 (448)
T PRK04792 335 VNLASGKVSRLTFE-GEQNLGGSITPDGRSMIMVNRT-NGKFNIARQDLETGAMQVLTSTRLDESPSVAPNGTMVIYSTT 412 (448)
T ss_pred EECCCCCEEEEecC-CCCCcCeeECCCCCEEEEEEec-CCceEEEEEECCCCCeEEccCCCCCCCceECCCCCEEEEEEe
Confidence 88776544444432 2223457999999999875432 33 566678876555444322 2234689999999988775
Q ss_pred CCCCCeEEEEEccCCEEEEEeeC--CCceEEEECC
Q 013871 257 GNLPGDMAFWDYVDGKQLGTTRA--ECSVTSEWSP 289 (434)
Q Consensus 257 ~~~~g~i~iwd~~~~~~i~~~~~--~~~~~~~wsp 289 (434)
....+.++++|.+ ++....+.. ......+|||
T Consensus 413 ~~g~~~l~~~~~~-G~~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 413 YQGKQVLAAVSID-GRFKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred cCCceEEEEEECC-CCceEECcCCCCCcCCCccCC
Confidence 4434568888875 433433333 2445588987
No 167
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.57 E-value=2.6e-13 Score=133.65 Aligned_cols=269 Identities=13% Similarity=0.145 Sum_probs=168.9
Q ss_pred ceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCC----cEEEEEeecCcCCCCCCeeeecC-CCcEEEEec-CCeEEEEe
Q 013871 3 LLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETG----EAVYQLFQKNMTKTTWPSIRFSS-DEAVACRMA-TNEIQFFD 76 (434)
Q Consensus 3 ~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g----~~~~~~~~~~~~~~~~~~~~~S~-d~~~la~~~-~~~i~v~~ 76 (434)
.+|+.-++-+.|+.+++ ..++|+.+... .+...+..+..--.....+.|.. ++++||++. ++.|.+||
T Consensus 43 nAIs~nr~~~qiv~AGr------s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWd 116 (839)
T KOG0269|consen 43 NAISVNRDINQIVVAGR------SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWD 116 (839)
T ss_pred ceEeecCCcceeEEecc------cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEe
Confidence 35666677777777663 34556654321 22222211110001122456765 678999885 57999999
Q ss_pred CCCCCC---ceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCC
Q 013871 77 TTDFPK---GILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGS 153 (434)
Q Consensus 77 ~~~~~~---~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G 153 (434)
++.+.. .....-|...+..+.|++....++. ++++++.|++||+.. .....+.......+..+.|+|.-
T Consensus 117 lnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~ili-----SGSQDg~vK~~DlR~---~~S~~t~~~nSESiRDV~fsp~~ 188 (839)
T KOG0269|consen 117 LNKSIRNKLLTVFNEHERSANKLDFHSTEPNILI-----SGSQDGTVKCWDLRS---KKSKSTFRSNSESIRDVKFSPGY 188 (839)
T ss_pred cCccccchhhhHhhhhccceeeeeeccCCccEEE-----ecCCCceEEEEeeec---ccccccccccchhhhceeeccCC
Confidence 987421 1234455667999999998444443 578999999999976 33333322233456678899854
Q ss_pred CeEEEEEEecccccCceeecceeEEEEeeCCcceeeeec-CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc---c
Q 013871 154 TGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL-RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC---R 229 (434)
Q Consensus 154 ~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l-~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~---~ 229 (434)
....+.+ .| . |...+|.+ ..-..+.+.+ .+.|+|.++.|+|++.++| +|+.|+.|+|||+.+ +
T Consensus 189 ~~~F~s~---~d-s-----G~lqlWDl--Rqp~r~~~k~~AH~GpV~c~nwhPnr~~lA--TGGRDK~vkiWd~t~~~~~ 255 (839)
T KOG0269|consen 189 GNKFASI---HD-S-----GYLQLWDL--RQPDRCEKKLTAHNGPVLCLNWHPNREWLA--TGGRDKMVKIWDMTDSRAK 255 (839)
T ss_pred CceEEEe---cC-C-----ceEEEeec--cCchhHHHHhhcccCceEEEeecCCCceee--ecCCCccEEEEeccCCCcc
Confidence 4332221 11 1 32234444 3322333333 3689999999999998998 788999999999863 4
Q ss_pred eeEEe-CCcCeeEEEECCCCC-eEEEEecCCCCCeEEEEEccC-CEEEEEeeCC--CceEEEECC-CCCEEEEEEc
Q 013871 230 PILEL-GSGPYNTVRWNPKGK-FLCLAGFGNLPGDMAFWDYVD-GKQLGTTRAE--CSVTSEWSP-DGRYFMTATT 299 (434)
Q Consensus 230 ~~~~~-~~~~~~~i~~SP~g~-~l~~~~~~~~~g~i~iwd~~~-~~~i~~~~~~--~~~~~~wsp-dg~~l~tas~ 299 (434)
.++.+ ...+++.+.|-|.-. +|++++.. .+..|+|||+.. +-...++..| .++.++|.. |-..|.+++.
T Consensus 256 ~~~tInTiapv~rVkWRP~~~~hLAtcsmv-~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sK 330 (839)
T KOG0269|consen 256 PKHTINTIAPVGRVKWRPARSYHLATCSMV-VDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSK 330 (839)
T ss_pred ceeEEeecceeeeeeeccCccchhhhhhcc-ccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecC
Confidence 45555 367899999999887 56665543 467899999874 3556667666 344489965 4555666666
No 168
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.56 E-value=6.2e-13 Score=123.86 Aligned_cols=267 Identities=15% Similarity=0.185 Sum_probs=173.3
Q ss_pred CCCCeeeecCCCc--EEEEec-CCeEEEEeCCC--C--CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEE
Q 013871 50 TTWPSIRFSSDEA--VACRMA-TNEIQFFDTTD--F--PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQI 122 (434)
Q Consensus 50 ~~~~~~~~S~d~~--~la~~~-~~~i~v~~~~~--~--~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i 122 (434)
..+.+++|.|... ++|.+. .|+|-+||... . ........|...|.++.|+|.+...|.. ...+|++++
T Consensus 187 ~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~s-----sSyDGtiR~ 261 (498)
T KOG4328|consen 187 RRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYS-----SSYDGTIRL 261 (498)
T ss_pred cceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheee-----eccCceeee
Confidence 5566999999664 555553 47999999842 1 1223334455569999999986444431 355688999
Q ss_pred EEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEE
Q 013871 123 YACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQ 202 (434)
Q Consensus 123 ~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~ 202 (434)
.++.... ...+.+..--....+.+.++.+...+++.. -+|..+++.+.+.+..-....+. +..|.+++
T Consensus 262 ~D~~~~i-~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~----------~~G~f~~iD~R~~~s~~~~~~lh-~kKI~sv~ 329 (498)
T KOG4328|consen 262 QDFEGNI-SEEVLSLDTDNIWFSSLDFSAESRSVLFGD----------NVGNFNVIDLRTDGSEYENLRLH-KKKITSVA 329 (498)
T ss_pred eeecchh-hHHHhhcCccceeeeeccccCCCccEEEee----------cccceEEEEeecCCccchhhhhh-hcccceee
Confidence 9987532 222222211122223444555555544431 12444566666655422223333 45899999
Q ss_pred ECcCCCEEEEEEccCCCeEEEEecc---cce---eEEe-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEcc----CC
Q 013871 203 WSYSGSEFAVVYGFMPASATIFNKK---CRP---ILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV----DG 271 (434)
Q Consensus 203 wspdg~~~av~~g~~~~~v~l~d~~---~~~---~~~~-~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~----~~ 271 (434)
++|-..++.. +++.|.+++|||++ .+. +.++ |...|++.+|||.|-.|++.+.|+ .|+|||.. .-
T Consensus 330 ~NP~~p~~la-T~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~---~IRv~dss~~sa~~ 405 (498)
T KOG4328|consen 330 LNPVCPWFLA-TASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDN---EIRVFDSSCISAKD 405 (498)
T ss_pred cCCCCchhee-ecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCC---ceEEeecccccccC
Confidence 9998887776 67789999999986 222 3444 789999999999988888888665 99999984 33
Q ss_pred EEEEEeeCCC-----c--eEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCce-eeeeecccc----eeeEEEcCCCCC
Q 013871 272 KQLGTTRAEC-----S--VTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL-FFKKMFDKL----FQAEWKPVSPDK 339 (434)
Q Consensus 272 ~~i~~~~~~~-----~--~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~-~~~~~~~~~----~~~~w~p~~~~~ 339 (434)
+...++.+.+ . .-.+|.||-.+|+++-. -..|-|+|-+|+. +.+.+.++. .-..|+|....+
T Consensus 406 ~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~------~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~ 479 (498)
T KOG4328|consen 406 EPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRY------PRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTL 479 (498)
T ss_pred CccceeeccCcccccccchhheeCCCccEEEEecc------CcceeEEcCCCCEEeeeccCccccccccceeecccccce
Confidence 4444444432 1 22799999999999887 6679999998775 555444433 345699998777
Q ss_pred CCCc
Q 013871 340 FGDI 343 (434)
Q Consensus 340 ~~~~ 343 (434)
+...
T Consensus 480 ~aG~ 483 (498)
T KOG4328|consen 480 AAGG 483 (498)
T ss_pred eccC
Confidence 7654
No 169
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.55 E-value=4.5e-12 Score=126.31 Aligned_cols=239 Identities=13% Similarity=0.095 Sum_probs=146.4
Q ss_pred CcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC----CeEEEEeCCCCCCceeeeee-cC-CeeEEEEe
Q 013871 26 KNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT----NEIQFFDTTDFPKGILYRLR-VP-GVAAFEVS 99 (434)
Q Consensus 26 ~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~----~~i~v~~~~~~~~~~~~~~~-~~-~v~~~~~s 99 (434)
..|.++|...+. .+.+.... ..+..+.|||||+.|++... ..|.+|++..... ..+. .. .+..+.||
T Consensus 179 ~~l~~~d~~g~~-~~~l~~~~---~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~---~~l~~~~g~~~~~~~S 251 (430)
T PRK00178 179 YTLQRSDYDGAR-AVTLLQSR---EPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRR---EQITNFEGLNGAPAWS 251 (430)
T ss_pred eEEEEECCCCCC-ceEEecCC---CceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCE---EEccCCCCCcCCeEEC
Confidence 358888876544 34443332 34448899999999988642 3789999876432 1221 22 34468999
Q ss_pred CCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEE
Q 013871 100 KAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNY 179 (434)
Q Consensus 100 p~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~ 179 (434)
|+ +..+++..... ....|.++++.+ + ....++..........|+|||+.|++.... . |...||.
T Consensus 252 pD-G~~la~~~~~~--g~~~Iy~~d~~~---~-~~~~lt~~~~~~~~~~~spDg~~i~f~s~~----~-----g~~~iy~ 315 (430)
T PRK00178 252 PD-GSKLAFVLSKD--GNPEIYVMDLAS---R-QLSRVTNHPAIDTEPFWGKDGRTLYFTSDR----G-----GKPQIYK 315 (430)
T ss_pred CC-CCEEEEEEccC--CCceEEEEECCC---C-CeEEcccCCCCcCCeEECCCCCEEEEEECC----C-----CCceEEE
Confidence 99 45555433221 224677778765 2 233344444455678999999998875321 1 2335788
Q ss_pred EeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccC-CCeEEEEecccceeEEeCC-cCeeEEEECCCCCeEEEEecC
Q 013871 180 LTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFM-PASATIFNKKCRPILELGS-GPYNTVRWNPKGKFLCLAGFG 257 (434)
Q Consensus 180 l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~-~~~v~l~d~~~~~~~~~~~-~~~~~i~~SP~g~~l~~~~~~ 257 (434)
+++.++....+... ........|+|||+.+++..... ...+.++|+.+.....+.. .......|||||++|+.+...
T Consensus 316 ~d~~~g~~~~lt~~-~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~~~~p~~spdg~~i~~~~~~ 394 (430)
T PRK00178 316 VNVNGGRAERVTFV-GNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDTSLDESPSVAPNGTMLIYATRQ 394 (430)
T ss_pred EECCCCCEEEeecC-CCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccCCCCCCCceECCCCCEEEEEEec
Confidence 87766544444432 22334678999999999764322 1268888987655554432 223357899999999888754
Q ss_pred CCCCeEEEEEccCCEEEEEeeC--CCceEEEECC
Q 013871 258 NLPGDMAFWDYVDGKQLGTTRA--ECSVTSEWSP 289 (434)
Q Consensus 258 ~~~g~i~iwd~~~~~~i~~~~~--~~~~~~~wsp 289 (434)
...+.|++++...... ..+.. ..+...+|||
T Consensus 395 ~g~~~l~~~~~~g~~~-~~l~~~~g~~~~p~ws~ 427 (430)
T PRK00178 395 QGRGVLMLVSINGRVR-LPLPTAQGEVREPSWSP 427 (430)
T ss_pred CCceEEEEEECCCCce-EECcCCCCCcCCCccCC
Confidence 4446788888865433 22222 2344578887
No 170
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.55 E-value=7.8e-12 Score=120.78 Aligned_cols=283 Identities=14% Similarity=0.145 Sum_probs=152.4
Q ss_pred eEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe--cCCeEEEEeCCCCC
Q 013871 4 LLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM--ATNEIQFFDTTDFP 81 (434)
Q Consensus 4 ~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~--~~~~i~v~~~~~~~ 81 (434)
.+.|||||+||.+.+ .|+.|.++|+.+++.+.++.... .. ..+++|+||++++.+ ..+++.++|..+.+
T Consensus 41 ~~~~s~Dgr~~yv~~-----rdg~vsviD~~~~~~v~~i~~G~---~~-~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle 111 (369)
T PF02239_consen 41 GLKFSPDGRYLYVAN-----RDGTVSVIDLATGKVVATIKVGG---NP-RGIAVSPDGKYVYVANYEPGTVSVIDAETLE 111 (369)
T ss_dssp EEE-TT-SSEEEEEE-----TTSEEEEEETTSSSEEEEEE-SS---EE-EEEEE--TTTEEEEEEEETTEEEEEETTT--
T ss_pred EEEecCCCCEEEEEc-----CCCeEEEEECCcccEEEEEecCC---Cc-ceEEEcCCCCEEEEEecCCCceeEecccccc
Confidence 367999999999988 67899999999999999987653 22 378999999999877 46899999998865
Q ss_pred Cceeeeee-------cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeee-cccceeEEEECCCC
Q 013871 82 KGILYRLR-------VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSF-FRCSTVQLNWNRGS 153 (434)
Q Consensus 82 ~~~~~~~~-------~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~-~~~~~~~~~ws~~G 153 (434)
........ ..++..+.-+|.....+ +-.-+ .+.|.+.++.. ...+..... ....-....|+|+|
T Consensus 112 ~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fV-v~lkd----~~~I~vVdy~d---~~~~~~~~i~~g~~~~D~~~dpdg 183 (369)
T PF02239_consen 112 PVKTIPTGGMPVDGPESRVAAIVASPGRPEFV-VNLKD----TGEIWVVDYSD---PKNLKVTTIKVGRFPHDGGFDPDG 183 (369)
T ss_dssp EEEEEE--EE-TTTS---EEEEEE-SSSSEEE-EEETT----TTEEEEEETTT---SSCEEEEEEE--TTEEEEEE-TTS
T ss_pred ceeecccccccccccCCCceeEEecCCCCEEE-EEEcc----CCeEEEEEecc---ccccceeeecccccccccccCccc
Confidence 43222111 12456666677633233 22222 24666667655 233322221 11223467899999
Q ss_pred CeEEEEEEecccccCceeecceeEEEEeeCCccee-eeecC---CCCCeE-------EEEECcC--CCEEEEEEccCCCe
Q 013871 154 TGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEG-LVPLR---KEGPVH-------DVQWSYS--GSEFAVVYGFMPAS 220 (434)
Q Consensus 154 ~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~-~v~l~---~~~~i~-------~v~wspd--g~~~av~~g~~~~~ 220 (434)
+++++.+.. .+ .+-.++....... .+... +.+++. ...|.-. +.......|.. .
T Consensus 184 ry~~va~~~-sn----------~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~--~ 250 (369)
T PF02239_consen 184 RYFLVAANG-SN----------KIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTD--P 250 (369)
T ss_dssp SEEEEEEGG-GT----------EEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE----T
T ss_pred ceeeecccc-cc----------eeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCC--c
Confidence 998764322 11 1222222221110 01110 122222 1223322 22221222332 3
Q ss_pred EEEEecc-cceeEEe--CCcCeeEEEECCCCCeEEEEec-CCCCCeEEEEEccCCEEEEEeeC-CC--ceEEEECCCCCE
Q 013871 221 ATIFNKK-CRPILEL--GSGPYNTVRWNPKGKFLCLAGF-GNLPGDMAFWDYVDGKQLGTTRA-EC--SVTSEWSPDGRY 293 (434)
Q Consensus 221 v~l~d~~-~~~~~~~--~~~~~~~i~~SP~g~~l~~~~~-~~~~g~i~iwd~~~~~~i~~~~~-~~--~~~~~wspdg~~ 293 (434)
+.++|.. .+.+.++ ..++ ..+.-+|+++++.+..+ +...+.|.++|.++.+.+..+.. .. +.+++|++||++
T Consensus 251 v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~ 329 (369)
T PF02239_consen 251 VSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKE 329 (369)
T ss_dssp TT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSE
T ss_pred cccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCE
Confidence 4456653 4455555 3334 77889999999999822 22357999999999988877743 23 888999999999
Q ss_pred EEEEEcCCceeeCC-cEEEEeec-Cceeeee
Q 013871 294 FMTATTAPRLQIDN-GIKIFHHN-GSLFFKK 322 (434)
Q Consensus 294 l~tas~~prl~~D~-~i~iw~~~-g~~~~~~ 322 (434)
+..+.-. .+ .|.|+|-. .+++...
T Consensus 330 v~vS~~~-----~~~~i~v~D~~Tl~~~~~i 355 (369)
T PF02239_consen 330 VWVSVWD-----GNGAIVVYDAKTLKEKKRI 355 (369)
T ss_dssp EEEEEE-------TTEEEEEETTTTEEEEEE
T ss_pred EEEEEec-----CCCEEEEEECCCcEEEEEE
Confidence 8887763 33 69999874 3444433
No 171
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.55 E-value=6.1e-12 Score=114.55 Aligned_cols=230 Identities=15% Similarity=0.244 Sum_probs=160.5
Q ss_pred eeeecCCCcEEEEecCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCc
Q 013871 54 SIRFSSDEAVACRMATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQP 133 (434)
Q Consensus 54 ~~~~S~d~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~ 133 (434)
.+.|..|...|+.+..+-.++|+...+++..........|...-||.. ++|+... .++..++++++.. ...
T Consensus 10 ~~~~Nqd~~~lsvGs~~Gyk~~~~~~~~k~~~~~~~~~~IvEmLFSSS---LvaiV~~---~qpr~Lkv~~~Kk---~~~ 80 (391)
T KOG2110|consen 10 FIGFNQDSTLLSVGSKDGYKIFSCSPFEKCFSKDTEGVSIVEMLFSSS---LVAIVSI---KQPRKLKVVHFKK---KTT 80 (391)
T ss_pred eeeeccceeEEEccCCCceeEEecCchHHhhcccCCCeEEEEeecccc---eeEEEec---CCCceEEEEEccc---Cce
Confidence 556888999999898888999998886652211222223556667754 3444322 4567889999876 677
Q ss_pred eeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecC----CCCCeEEEEECcCCCE
Q 013871 134 LARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR----KEGPVHDVQWSYSGSE 209 (434)
Q Consensus 134 i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~----~~~~i~~v~wspdg~~ 209 (434)
|+... |...+..++.|. ++|+++... .+|..++... ...-+++ +...+.++..++.+.+
T Consensus 81 ICe~~-fpt~IL~VrmNr--~RLvV~Lee-------------~IyIydI~~M-klLhTI~t~~~n~~gl~AlS~n~~n~y 143 (391)
T KOG2110|consen 81 ICEIF-FPTSILAVRMNR--KRLVVCLEE-------------SIYIYDIKDM-KLLHTIETTPPNPKGLCALSPNNANCY 143 (391)
T ss_pred EEEEe-cCCceEEEEEcc--ceEEEEEcc-------------cEEEEecccc-eeehhhhccCCCccceEeeccCCCCce
Confidence 77765 455788888876 456555321 1444444332 1111111 2344566666666779
Q ss_pred EEEEEccCCCeEEEEecc-cceeEE--eCCcCeeEEEECCCCCeEEEEecCCCCC-eEEEEEccCCEEEEEeeCC----C
Q 013871 210 FAVVYGFMPASATIFNKK-CRPILE--LGSGPYNTVRWNPKGKFLCLAGFGNLPG-DMAFWDYVDGKQLGTTRAE----C 281 (434)
Q Consensus 210 ~av~~g~~~~~v~l~d~~-~~~~~~--~~~~~~~~i~~SP~g~~l~~~~~~~~~g-~i~iwd~~~~~~i~~~~~~----~ 281 (434)
+|+-.....+.|.|||+. ..++.. .|.+++-+++|||+|.+||+|+ ..| .|+|+.+.+|..+..+.-. .
T Consensus 144 lAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATAS---eKGTVIRVf~v~~G~kl~eFRRG~~~~~ 220 (391)
T KOG2110|consen 144 LAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATAS---EKGTVIRVFSVPEGQKLYEFRRGTYPVS 220 (391)
T ss_pred EEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEec---cCceEEEEEEcCCccEeeeeeCCceeeE
Confidence 997655567899999984 344433 4999999999999999999998 445 5799999999999888764 4
Q ss_pred ceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCce
Q 013871 282 SVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL 318 (434)
Q Consensus 282 ~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~ 318 (434)
+..++||||+++|++++. -.+|+||.++...
T Consensus 221 IySL~Fs~ds~~L~~sS~------TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 221 IYSLSFSPDSQFLAASSN------TETVHIFKLEKVS 251 (391)
T ss_pred EEEEEECCCCCeEEEecC------CCeEEEEEecccc
Confidence 445999999999998888 8999999997665
No 172
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.55 E-value=6.7e-12 Score=124.57 Aligned_cols=230 Identities=16% Similarity=0.189 Sum_probs=142.6
Q ss_pred eEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEEC
Q 013871 71 EIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWN 150 (434)
Q Consensus 71 ~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws 150 (434)
.|.++|...... .........+....|||+ +..+++..... ....|.+|++.+ +.. .....+......+.|+
T Consensus 171 ~l~~~d~~g~~~-~~l~~~~~~~~~p~~Spd-g~~la~~~~~~--~~~~i~v~d~~~---g~~-~~~~~~~~~~~~~~~s 242 (417)
T TIGR02800 171 ELQVADYDGANP-QTITRSREPILSPAWSPD-GQKLAYVSFES--GKPEIYVQDLAT---GQR-EKVASFPGMNGAPAFS 242 (417)
T ss_pred eEEEEcCCCCCC-EEeecCCCceecccCCCC-CCEEEEEEcCC--CCcEEEEEECCC---CCE-EEeecCCCCccceEEC
Confidence 688888754322 222222234778899999 56666543322 235789999876 332 2233344445568999
Q ss_pred CCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccC-CCeEEEEecccc
Q 013871 151 RGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFM-PASATIFNKKCR 229 (434)
Q Consensus 151 ~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~-~~~v~l~d~~~~ 229 (434)
|||+.|++..+.+ +...||.++..+.....+. ...+.....+|+|||+++++.+... ...|.++|+.+.
T Consensus 243 pDg~~l~~~~~~~---------~~~~i~~~d~~~~~~~~l~-~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~ 312 (417)
T TIGR02800 243 PDGSKLAVSLSKD---------GNPDIYVMDLDGKQLTRLT-NGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGG 312 (417)
T ss_pred CCCCEEEEEECCC---------CCccEEEEECCCCCEEECC-CCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 9999987753221 2335777777655333332 2234455789999999998754321 226888888755
Q ss_pred eeEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceEEEECCCCCEEEEEEcCCceeeCC
Q 013871 230 PILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDN 307 (434)
Q Consensus 230 ~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~~~wspdg~~l~tas~~prl~~D~ 307 (434)
....+ +......+.|||+|++|+.+..+.....|.+||+.++...............|+|||++|+.++.... ..
T Consensus 313 ~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~p~~spdg~~l~~~~~~~~---~~ 389 (417)
T TIGR02800 313 EVRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTDTGLDESPSFAPNGRMILYATTRGG---RG 389 (417)
T ss_pred CEEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccCCCCCCCceECCCCCEEEEEEeCCC---cE
Confidence 44433 44556678999999999988754333489999998764433332223344799999999999887210 12
Q ss_pred cEEEEeecCceeee
Q 013871 308 GIKIFHHNGSLFFK 321 (434)
Q Consensus 308 ~i~iw~~~g~~~~~ 321 (434)
.+.+.+.+|.....
T Consensus 390 ~l~~~~~~g~~~~~ 403 (417)
T TIGR02800 390 VLGLVSTDGRFRAR 403 (417)
T ss_pred EEEEEECCCceeeE
Confidence 35566667765443
No 173
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.54 E-value=8e-13 Score=123.21 Aligned_cols=220 Identities=15% Similarity=0.130 Sum_probs=142.9
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEE-EecCCeEEEEeCCCC
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVAC-RMATNEIQFFDTTDF 80 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la-~~~~~~i~v~~~~~~ 80 (434)
|.+++.||||+||+|.+ .|..|.||+..+++.++.|.++. ..|.+++|-..-..+. .+.|..|++|+++.+
T Consensus 205 il~~avS~Dgkylatgg-----~d~~v~Iw~~~t~ehv~~~~ghr---~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~ 276 (479)
T KOG0299|consen 205 ILTLAVSSDGKYLATGG-----RDRHVQIWDCDTLEHVKVFKGHR---GAVSSLAFRKGTSELYSASADRSVKVWSIDQL 276 (479)
T ss_pred eEEEEEcCCCcEEEecC-----CCceEEEecCcccchhhcccccc---cceeeeeeecCccceeeeecCCceEEEehhHh
Confidence 57899999999999988 88999999999999999988765 6677889977554444 456789999999987
Q ss_pred CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEE
Q 013871 81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVA 160 (434)
Q Consensus 81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~ 160 (434)
........|...|.++....- ...+.+ ++.+.++++|.++.. .+.+..- +....-++++-.+ .+++.
T Consensus 277 s~vetlyGHqd~v~~IdaL~r-eR~vtV-----GgrDrT~rlwKi~ee--sqlifrg--~~~sidcv~~In~-~Hfvs-- 343 (479)
T KOG0299|consen 277 SYVETLYGHQDGVLGIDALSR-ERCVTV-----GGRDRTVRLWKIPEE--SQLIFRG--GEGSIDCVAFIND-EHFVS-- 343 (479)
T ss_pred HHHHHHhCCccceeeechhcc-cceEEe-----ccccceeEEEecccc--ceeeeeC--CCCCeeeEEEecc-cceee--
Confidence 765566677777877755432 222332 467789999999873 2222211 1111112222111 12111
Q ss_pred EecccccCceeecceeEEEEeeCCcce-eeee-----------cCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc
Q 013871 161 QSDVDKTNQSYYGESKLNYLTTDGTHE-GLVP-----------LRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC 228 (434)
Q Consensus 161 ~~~~d~~~~~~~g~~~l~~l~~~~~~~-~~v~-----------l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~ 228 (434)
...+ |...||-+ ..... .... +..+.-|++++..|....|| +|+.++.|++|-+..
T Consensus 344 -GSdn-------G~IaLWs~--~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~a--sGS~~G~vrLW~i~~ 411 (479)
T KOG0299|consen 344 -GSDN-------GSIALWSL--LKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLA--SGSWSGCVRLWKIED 411 (479)
T ss_pred -ccCC-------ceEEEeee--cccCceeEeeccccccCCccccccccceeeeEecccCceEE--ecCCCCceEEEEecC
Confidence 1011 22222222 11100 0001 11123788999999998888 799999999997653
Q ss_pred -----ceeEEe-CCcCeeEEEECCCCCeEEEE
Q 013871 229 -----RPILEL-GSGPYNTVRWNPKGKFLCLA 254 (434)
Q Consensus 229 -----~~~~~~-~~~~~~~i~~SP~g~~l~~~ 254 (434)
+++.++ -.+.||.|+|+++|++|++|
T Consensus 412 g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivag 443 (479)
T KOG0299|consen 412 GLRAINLLYSLSLVGFVNSLAFSNSGKRIVAG 443 (479)
T ss_pred CccccceeeecccccEEEEEEEccCCCEEEEe
Confidence 344455 37889999999999977665
No 174
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.53 E-value=2.7e-13 Score=116.83 Aligned_cols=208 Identities=17% Similarity=0.256 Sum_probs=149.0
Q ss_pred CCCceEEEEEcCCCCCCCceeeeeecccceeEEEECC--CCCeEEEEEEecccccCceeecceeEEEEeeCCcceee-ee
Q 013871 115 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNR--GSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGL-VP 191 (434)
Q Consensus 115 ~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~--~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~-v~ 191 (434)
+.++.|+|+.+.+..+...+..+..|...+-++.|-. -|+.|+ +. +|.|..-||.-+ .+..... .-
T Consensus 30 sSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLA---Sc-------sYDgkVIiWke~-~g~w~k~~e~ 98 (299)
T KOG1332|consen 30 SSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILA---SC-------SYDGKVIIWKEE-NGRWTKAYEH 98 (299)
T ss_pred cCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEee---Ee-------ecCceEEEEecC-CCchhhhhhh
Confidence 5567899999987644477889999999999999976 677543 33 344443344321 1111111 11
Q ss_pred cCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccc------eeEEeCCcCeeEEEECCC---C-----------CeE
Q 013871 192 LRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR------PILELGSGPYNTVRWNPK---G-----------KFL 251 (434)
Q Consensus 192 l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~------~~~~~~~~~~~~i~~SP~---g-----------~~l 251 (434)
..+...|++++|.|.+.-|.+.+++.|++|.+++.+.. .+...|.-.+|+++|.|- | +.|
T Consensus 99 ~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krl 178 (299)
T KOG1332|consen 99 AAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRL 178 (299)
T ss_pred hhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCccccccee
Confidence 23478999999999887777778899999999876533 344558889999999996 5 569
Q ss_pred EEEecCCCCCeEEEEEccCC--EEEEEeeCC--CceEEEECCCC----CEEEEEEcCCceeeCCcEEEEeecCc------
Q 013871 252 CLAGFGNLPGDMAFWDYVDG--KQLGTTRAE--CSVTSEWSPDG----RYFMTATTAPRLQIDNGIKIFHHNGS------ 317 (434)
Q Consensus 252 ~~~~~~~~~g~i~iwd~~~~--~~i~~~~~~--~~~~~~wspdg----~~l~tas~~prl~~D~~i~iw~~~g~------ 317 (434)
++||.|| .|+||+.+++ +.-.++++| .+..++|.|.- .+|++++. |+.+.||....+
T Consensus 179 vSgGcDn---~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~Sq------Dg~viIwt~~~e~e~wk~ 249 (299)
T KOG1332|consen 179 VSGGCDN---LVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQ------DGTVIIWTKDEEYEPWKK 249 (299)
T ss_pred eccCCcc---ceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecC------CCcEEEEEecCccCcccc
Confidence 9999666 9999998875 334446666 55669999974 47889998 999999998643
Q ss_pred eeeeeecccceeeEEEcCCCCCCCC
Q 013871 318 LFFKKMFDKLFQAEWKPVSPDKFGD 342 (434)
Q Consensus 318 ~~~~~~~~~~~~~~w~p~~~~~~~~ 342 (434)
.+.+.-.+.+|.+.|++.+..|.-.
T Consensus 250 tll~~f~~~~w~vSWS~sGn~LaVs 274 (299)
T KOG1332|consen 250 TLLEEFPDVVWRVSWSLSGNILAVS 274 (299)
T ss_pred cccccCCcceEEEEEeccccEEEEe
Confidence 1122233569999999988766554
No 175
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.53 E-value=2.6e-12 Score=128.57 Aligned_cols=274 Identities=16% Similarity=0.143 Sum_probs=166.4
Q ss_pred EEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCc---EEEEe-cCCeEEEEeCCCC
Q 013871 5 LTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEA---VACRM-ATNEIQFFDTTDF 80 (434)
Q Consensus 5 l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~---~la~~-~~~~i~v~~~~~~ 80 (434)
-.||+|+++|+... +.+|.||.+.||++++.+..+. ..+..+.+-|... ++.+. .+|+|++||-.+.
T Consensus 22 avfSnD~k~l~~~~------~~~V~VyS~~Tg~~i~~l~~~~---a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~ 92 (792)
T KOG1963|consen 22 AVFSNDAKFLFLCT------GNFVKVYSTATGECITSLEDHT---APLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDG 92 (792)
T ss_pred cccccCCcEEEEee------CCEEEEEecchHhhhhhccccc---CccceeeecCCCccceEEEEEecCccEEEecCCCc
Confidence 35999999998755 5789999999999999765543 5666777766443 33344 5799999998775
Q ss_pred CCceeeeeecCCeeEEEEeCCC--CCeEE--------EEecCCCCCCceEEEEEcCCCCCCCceeeeeecccc--eeEEE
Q 013871 81 PKGILYRLRVPGVAAFEVSKAP--GSHVA--------VFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCS--TVQLN 148 (434)
Q Consensus 81 ~~~~~~~~~~~~v~~~~~sp~~--~~~ia--------~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~--~~~~~ 148 (434)
..........+ +....+.|.- ....+ ++...+.....+++-+.++++. .....+-+.. ...+.
T Consensus 93 ~Llkt~~~~~~-v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~----~~~~d~~~~~~~~~~I~ 167 (792)
T KOG1963|consen 93 ELLKTFDNNLP-VHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFD----SAKGDFLKEHQEPKSIV 167 (792)
T ss_pred EEEEEEecCCc-eeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeecc----ccchhhhhhhcCCccEE
Confidence 54333322222 2222221210 00010 1111111222223333332210 0011111111 35677
Q ss_pred ECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcc--eeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEec
Q 013871 149 WNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH--EGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNK 226 (434)
Q Consensus 149 ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~--~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~ 226 (434)
.++.|....+.... ..-+| .....+.+ .....+.+...+..+++||+++.+| +|.++|+|.+|.-
T Consensus 168 ~~~~ge~~~i~~~~----~~~~~-------~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~A--a~d~dGrI~vw~d 234 (792)
T KOG1963|consen 168 DNNSGEFKGIVHMC----KIHIY-------FVPKHTKHTSSRDITVHHTFNITCVALSPNERYLA--AGDSDGRILVWRD 234 (792)
T ss_pred EcCCceEEEEEEee----eEEEE-------EecccceeeccchhhhhhcccceeEEeccccceEE--EeccCCcEEEEec
Confidence 88888876554221 11111 11110100 1111223344588999999999999 6999999999943
Q ss_pred -c------cceeEEeCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEee-CCCceEEEECCCCCEEEEEE
Q 013871 227 -K------CRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTR-AECSVTSEWSPDGRYFMTAT 298 (434)
Q Consensus 227 -~------~~~~~~~~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~-~~~~~~~~wspdg~~l~tas 298 (434)
. ...+...|...++++.||++|.+|++|| ..|.+.+|.+.+++.-.... +..+..+.||||+.+.++..
T Consensus 235 ~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG---~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~ 311 (792)
T KOG1963|consen 235 FGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGG---REGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVL 311 (792)
T ss_pred cccccccccceEEEecccccceeEEecCCceEeecc---cceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEEEEe
Confidence 2 2234456899999999999999999999 55799999999885222222 23566799999999999999
Q ss_pred cCCceeeCCcEEEEee
Q 013871 299 TAPRLQIDNGIKIFHH 314 (434)
Q Consensus 299 ~~prl~~D~~i~iw~~ 314 (434)
. ||.|.+-+.
T Consensus 312 ~------DNqI~li~~ 321 (792)
T KOG1963|consen 312 E------DNQIHLIKA 321 (792)
T ss_pred c------CceEEEEec
Confidence 9 999999887
No 176
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.51 E-value=1.6e-12 Score=122.22 Aligned_cols=253 Identities=14% Similarity=0.181 Sum_probs=161.0
Q ss_pred ceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCc---E--EEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEe
Q 013871 3 LLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGE---A--VYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFD 76 (434)
Q Consensus 3 ~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~---~--~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~ 76 (434)
.++.|+... +|++.+. ..|+.+++|. +.|+ . ++...+ ..-.|+.-.....|+++++ ++.|+|||
T Consensus 38 ~s~~w~~~n-~lvvas~---~gdk~~~~~~-K~g~~~~Vp~~~k~~g-----d~~~Cv~~~s~S~y~~sgG~~~~Vkiwd 107 (673)
T KOG4378|consen 38 FSFNWQRRN-FLVVASM---AGDKVMRIKE-KDGKTPEVPRVRKLTG-----DNAFCVACASQSLYEISGGQSGCVKIWD 107 (673)
T ss_pred eeeeccccc-eEEEeec---CCceeEEEec-ccCCCCccceeecccc-----chHHHHhhhhcceeeeccCcCceeeehh
Confidence 455565543 4776663 3688999996 4444 2 122211 1112454445558888875 57999999
Q ss_pred CCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeeccccee-EEEECCCCCe
Q 013871 77 TTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTV-QLNWNRGSTG 155 (434)
Q Consensus 77 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~-~~~ws~~G~~ 155 (434)
+.........+-|...|..+.+.-. +.+||.. ...|.|.|..+.+ ++............+ -+.+++..++
T Consensus 108 l~~kl~hr~lkdh~stvt~v~YN~~-DeyiAsv-----s~gGdiiih~~~t---~~~tt~f~~~sgqsvRll~ys~skr~ 178 (673)
T KOG4378|consen 108 LRAKLIHRFLKDHQSTVTYVDYNNT-DEYIASV-----SDGGDIIIHGTKT---KQKTTTFTIDSGQSVRLLRYSPSKRF 178 (673)
T ss_pred hHHHHHhhhccCCcceeEEEEecCC-cceeEEe-----ccCCcEEEEeccc---CccccceecCCCCeEEEeecccccce
Confidence 8753222223344556777766654 5666643 2335778888766 333333333323344 7889999999
Q ss_pred EEEEEEecccccCceeecceeEEEEeeCCcceeeeec--CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeEE
Q 013871 156 LLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL--RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILE 233 (434)
Q Consensus 156 l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l--~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~ 233 (434)
++..++. .|..+|| ++.|. ...... .|..|...|+|+|....+++ +-.+|.+|.+||.+.+...+
T Consensus 179 lL~~asd---------~G~Vtlw--Dv~g~-sp~~~~~~~HsAP~~gicfspsne~l~v-sVG~Dkki~~yD~~s~~s~~ 245 (673)
T KOG4378|consen 179 LLSIASD---------KGAVTLW--DVQGM-SPIFHASEAHSAPCRGICFSPSNEALLV-SVGYDKKINIYDIRSQASTD 245 (673)
T ss_pred eeEeecc---------CCeEEEE--eccCC-CcccchhhhccCCcCcceecCCccceEE-EecccceEEEeecccccccc
Confidence 8877633 2444444 44454 222222 25789999999997766665 45679999999997554433
Q ss_pred -e-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC-EEEEEeeCC--CceEEEECCC
Q 013871 234 -L-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG-KQLGTTRAE--CSVTSEWSPD 290 (434)
Q Consensus 234 -~-~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~-~~i~~~~~~--~~~~~~wspd 290 (434)
+ -..|..+++|+|+|.+|+.|. ..|.|..||++.. ..+....+| .++.++|-|.
T Consensus 246 ~l~y~~Plstvaf~~~G~~L~aG~---s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s 304 (673)
T KOG4378|consen 246 RLTYSHPLSTVAFSECGTYLCAGN---SKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPS 304 (673)
T ss_pred eeeecCCcceeeecCCceEEEeec---CCceEEEEecccCCCCceEeeecccceeEEEeeec
Confidence 2 467889999999999999887 7799999999865 455555555 5666888665
No 177
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.50 E-value=6.1e-13 Score=122.95 Aligned_cols=200 Identities=12% Similarity=0.130 Sum_probs=126.0
Q ss_pred ceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCCC
Q 013871 3 LLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPK 82 (434)
Q Consensus 3 ~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~ 82 (434)
.+++|+++|+.|+|+. .|+.++||+..+-..+..+..+ ...+..+.|||||++|++.+.+..+||++.+...
T Consensus 148 k~vaf~~~gs~latgg-----~dg~lRv~~~Ps~~t~l~e~~~---~~eV~DL~FS~dgk~lasig~d~~~VW~~~~g~~ 219 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGG-----TDGTLRVWEWPSMLTILEEIAH---HAEVKDLDFSPDGKFLASIGADSARVWSVNTGAA 219 (398)
T ss_pred eEEEEcCCCCEeeecc-----ccceEEEEecCcchhhhhhHhh---cCccccceeCCCCcEEEEecCCceEEEEeccCch
Confidence 3689999999999999 8999999997766554444443 3778899999999999999878999999987532
Q ss_pred ceeee--eecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEE
Q 013871 83 GILYR--LRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVA 160 (434)
Q Consensus 83 ~~~~~--~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~ 160 (434)
..... -.......+.|+.++.. ..+++...... ...+.... -..|+.+ +.+
T Consensus 220 ~a~~t~~~k~~~~~~cRF~~d~~~-------------~~l~laa~~~~--~~~v~~~~-------~~~w~~~-~~l---- 272 (398)
T KOG0771|consen 220 LARKTPFSKDEMFSSCRFSVDNAQ-------------ETLRLAASQFP--GGGVRLCD-------ISLWSGS-NFL---- 272 (398)
T ss_pred hhhcCCcccchhhhhceecccCCC-------------ceEEEEEecCC--CCceeEEE-------eeeeccc-ccc----
Confidence 11111 00112333334433210 12222222110 00000000 0011111 100
Q ss_pred EecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeEE----eCC
Q 013871 161 QSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILE----LGS 236 (434)
Q Consensus 161 ~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~----~~~ 236 (434)
.....+.....|.+++.|+||+++|+ |.|++.|-+|+...-+... .|.
T Consensus 273 --------------------------~~~~~~~~~~siSsl~VS~dGkf~Al--GT~dGsVai~~~~~lq~~~~vk~aH~ 324 (398)
T KOG0771|consen 273 --------------------------RLRKKIKRFKSISSLAVSDDGKFLAL--GTMDGSVAIYDAKSLQRLQYVKEAHL 324 (398)
T ss_pred --------------------------chhhhhhccCcceeEEEcCCCcEEEE--eccCCcEEEEEeceeeeeEeehhhhe
Confidence 00001112458899999999999996 8899999999986544333 388
Q ss_pred cCeeEEEECCCCCeEEEEecCCCCCeEEEEEc
Q 013871 237 GPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDY 268 (434)
Q Consensus 237 ~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~ 268 (434)
..|+.+.|+||.++++..++++ .+.|.-+
T Consensus 325 ~~VT~ltF~Pdsr~~~svSs~~---~~~v~~l 353 (398)
T KOG0771|consen 325 GFVTGLTFSPDSRYLASVSSDN---EAAVTKL 353 (398)
T ss_pred eeeeeEEEcCCcCcccccccCC---ceeEEEE
Confidence 8999999999999999988666 5555443
No 178
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.50 E-value=2.9e-11 Score=120.09 Aligned_cols=255 Identities=13% Similarity=0.093 Sum_probs=149.4
Q ss_pred CcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC----CeEEEEeCCCCCCceee
Q 013871 11 GLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT----NEIQFFDTTDFPKGILY 86 (434)
Q Consensus 11 g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~----~~i~v~~~~~~~~~~~~ 86 (434)
+..++............|.++|...+ ..+.+.... ..+..+.|||||++|++... .+|++|++..... ...
T Consensus 155 ~~~~~~~~~~~~~~~~~l~~~d~~g~-~~~~l~~~~---~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~-~~~ 229 (417)
T TIGR02800 155 STRIAYVSKSGKSRRYELQVADYDGA-NPQTITRSR---EPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQR-EKV 229 (417)
T ss_pred CCEEEEEEEeCCCCcceEEEEcCCCC-CCEEeecCC---CceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCE-EEe
Confidence 45555544222223457889887544 344444432 23447899999999998742 4899999876432 111
Q ss_pred eeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccc
Q 013871 87 RLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDK 166 (434)
Q Consensus 87 ~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~ 166 (434)
......+..+.|+|++ ..+++.... .....|.+|++.+ + ....+..+........|+|+|+.|++....
T Consensus 230 ~~~~~~~~~~~~spDg-~~l~~~~~~--~~~~~i~~~d~~~---~-~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~---- 298 (417)
T TIGR02800 230 ASFPGMNGAPAFSPDG-SKLAVSLSK--DGNPDIYVMDLDG---K-QLTRLTNGPGIDTEPSWSPDGKSIAFTSDR---- 298 (417)
T ss_pred ecCCCCccceEECCCC-CEEEEEECC--CCCccEEEEECCC---C-CEEECCCCCCCCCCEEECCCCCEEEEEECC----
Confidence 1112235568999984 444433221 2234677778765 2 233333333344567899999998775321
Q ss_pred cCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCC-CeEEEEecccceeEEeC-CcCeeEEEE
Q 013871 167 TNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMP-ASATIFNKKCRPILELG-SGPYNTVRW 244 (434)
Q Consensus 167 ~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~-~~v~l~d~~~~~~~~~~-~~~~~~i~~ 244 (434)
. +...||.++..+.....+.. ....+..+.|+|+|+.+++.....+ ..|.++|+.......+. ........|
T Consensus 299 ~-----g~~~iy~~d~~~~~~~~l~~-~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~p~~ 372 (417)
T TIGR02800 299 G-----GSPQIYMMDADGGEVRRLTF-RGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTDTGLDESPSF 372 (417)
T ss_pred C-----CCceEEEEECCCCCEEEeec-CCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccCCCCCCCceE
Confidence 1 22357888776654333332 2455678999999999987543221 17888898765444442 223455789
Q ss_pred CCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEEC
Q 013871 245 NPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWS 288 (434)
Q Consensus 245 SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~ws 288 (434)
+|||++|+.+..++....+++.+... +....+..+ .+..+.||
T Consensus 373 spdg~~l~~~~~~~~~~~l~~~~~~g-~~~~~~~~~~g~~~~~~ws 417 (417)
T TIGR02800 373 APNGRMILYATTRGGRGVLGLVSTDG-RFRARLPLGNGDVREPAWS 417 (417)
T ss_pred CCCCCEEEEEEeCCCcEEEEEEECCC-ceeeECCCCCCCcCCCCCC
Confidence 99999998887654344677776543 333333322 33335553
No 179
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.50 E-value=5.5e-11 Score=114.23 Aligned_cols=254 Identities=13% Similarity=0.121 Sum_probs=151.3
Q ss_pred EEEecCCeEEEEeCCCCCC-ceeeeee-cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCC--ceeeeee
Q 013871 64 ACRMATNEIQFFDTTDFPK-GILYRLR-VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQ--PLARRSF 139 (434)
Q Consensus 64 la~~~~~~i~v~~~~~~~~-~~~~~~~-~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~--~i~~~~~ 139 (434)
++...++.|.+|++..... .....+. ..+...+.++|++ ..+.+-. ...+.|.+|++... +. .+....
T Consensus 6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~-~~lyv~~----~~~~~i~~~~~~~~--g~l~~~~~~~- 77 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDK-RHLYVGV----RPEFRVLSYRIADD--GALTFAAESP- 77 (330)
T ss_pred EEcCCCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCC-CEEEEEE----CCCCcEEEEEECCC--CceEEeeeec-
Confidence 3334568999999963222 1222232 2457788999984 4443321 13467888998631 21 122221
Q ss_pred cccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeee-ecCCCCCeEEEEECcCCCEEEEEEccCC
Q 013871 140 FRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLV-PLRKEGPVHDVQWSYSGSEFAVVYGFMP 218 (434)
Q Consensus 140 ~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v-~l~~~~~i~~v~wspdg~~~av~~g~~~ 218 (434)
.....+.+.++|+|+.+++.... + +...++.++.++.....+ .+......+.++++|+|+++++ +...+
T Consensus 78 ~~~~p~~i~~~~~g~~l~v~~~~--~-------~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v-~~~~~ 147 (330)
T PRK11028 78 LPGSPTHISTDHQGRFLFSASYN--A-------NCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWV-PCLKE 147 (330)
T ss_pred CCCCceEEEECCCCCEEEEEEcC--C-------CeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEE-eeCCC
Confidence 22345789999999987664211 1 111223332222111111 1222345688999999988876 46667
Q ss_pred CeEEEEeccc-ceeE-------Ee-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccC--C--EEEEEeeCC-----
Q 013871 219 ASATIFNKKC-RPIL-------EL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD--G--KQLGTTRAE----- 280 (434)
Q Consensus 219 ~~v~l~d~~~-~~~~-------~~-~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~--~--~~i~~~~~~----- 280 (434)
+.|.+||++. ..+. .. .......+.|+|+|++++++..+ ++.|.+||++. + +.+..+...
T Consensus 148 ~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~--~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~ 225 (330)
T PRK11028 148 DRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNEL--NSSVDVWQLKDPHGEIECVQTLDMMPADFS 225 (330)
T ss_pred CEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecC--CCEEEEEEEeCCCCCEEEEEEEecCCCcCC
Confidence 8999999864 2121 11 12234579999999999888642 47999999973 3 334433221
Q ss_pred ---CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec--Ccee---eeeec-ccceeeEEEcCCCCCCCC
Q 013871 281 ---CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN--GSLF---FKKMF-DKLFQAEWKPVSPDKFGD 342 (434)
Q Consensus 281 ---~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~--g~~~---~~~~~-~~~~~~~w~p~~~~~~~~ 342 (434)
....+.++|||++|+++... ++.|.+|+++ +..+ ..... .....+.++|++..+|..
T Consensus 226 ~~~~~~~i~~~pdg~~lyv~~~~-----~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va 291 (330)
T PRK11028 226 DTRWAADIHITPDGRHLYACDRT-----ASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAA 291 (330)
T ss_pred CCccceeEEECCCCCEEEEecCC-----CCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEE
Confidence 22348899999999998542 8999999993 3221 21111 134578899999888865
No 180
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.49 E-value=8.4e-13 Score=116.12 Aligned_cols=139 Identities=21% Similarity=0.418 Sum_probs=102.0
Q ss_pred EEEEECcCCCEEEEEEcc-CC-------CeEEEEec--ccceeEEe---CCcCeeEEEECCCCCeEEEEecCCCCCeEEE
Q 013871 199 HDVQWSYSGSEFAVVYGF-MP-------ASATIFNK--KCRPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAF 265 (434)
Q Consensus 199 ~~v~wspdg~~~av~~g~-~~-------~~v~l~d~--~~~~~~~~---~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~i 265 (434)
-.+.|+|+|..+++.... .+ +...||.+ +..++..+ ..++|.+++|||+|+.+|+.. |..+..|.|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~-g~~~~~v~l 87 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIY-GSMPAKVTL 87 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEE-ccCCcccEE
Confidence 468999999999987652 11 23445544 44443333 356799999999999877653 235569999
Q ss_pred EEccCCEEEEEeeCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecC-ceeeeeecccceeeEEEcCCCCCCCC
Q 013871 266 WDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG-SLFFKKMFDKLFQAEWKPVSPDKFGD 342 (434)
Q Consensus 266 wd~~~~~~i~~~~~~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g-~~~~~~~~~~~~~~~w~p~~~~~~~~ 342 (434)
||++ ++.+..+.......+.|||+|++|++|+.. ...+.+.+||... +.+...+......+.|+|++..++..
T Consensus 88 yd~~-~~~i~~~~~~~~n~i~wsP~G~~l~~~g~~---n~~G~l~~wd~~~~~~i~~~~~~~~t~~~WsPdGr~~~ta 161 (194)
T PF08662_consen 88 YDVK-GKKIFSFGTQPRNTISWSPDGRFLVLAGFG---NLNGDLEFWDVRKKKKISTFEHSDATDVEWSPDGRYLATA 161 (194)
T ss_pred EcCc-ccEeEeecCCCceEEEECCCCCEEEEEEcc---CCCcEEEEEECCCCEEeeccccCcEEEEEEcCCCCEEEEE
Confidence 9997 777778876667779999999999999861 1135699999964 45555555668899999999998876
No 181
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.49 E-value=1.1e-11 Score=112.62 Aligned_cols=236 Identities=16% Similarity=0.196 Sum_probs=146.3
Q ss_pred cceEEecCCC-cEEEEEecCCCCCCCcEEEEEcCC-C---cE--------EEEEeecCcCCCCCCeeeecCCCcEEEEec
Q 013871 2 LLLLTCLRVG-LIIQTFQKSSTPQEKNVILWKTET-G---EA--------VYQLFQKNMTKTTWPSIRFSSDEAVACRMA 68 (434)
Q Consensus 2 V~~l~fSP~g-~~L~t~~~~~~~~d~~v~iWd~~~-g---~~--------~~~~~~~~~~~~~~~~~~~S~d~~~la~~~ 68 (434)
|.||+|=|.+ +-|+.+. ..-|.||.... + .. ..-+.... | ..|++++|.+||..+++++
T Consensus 143 vtclawRPlsaselavgC------r~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pg-h-~pVtsmqwn~dgt~l~tAS 214 (445)
T KOG2139|consen 143 VTCLAWRPLSASELAVGC------RAGICIWSDSRTLNANRNIRMMSTHHLQVLQDPG-H-NPVTSMQWNEDGTILVTAS 214 (445)
T ss_pred eeEEEeccCCcceeeeee------cceeEEEEcCcccccccccccccccchhheeCCC-C-ceeeEEEEcCCCCEEeecc
Confidence 6789999965 4555544 35689997632 1 11 11122222 2 6788999999999999883
Q ss_pred --CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeE
Q 013871 69 --TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQ 146 (434)
Q Consensus 69 --~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~ 146 (434)
+..|.|||.+.............++.-+.|||+++..+|. ..++..++|+..+. -....... ....+..
T Consensus 215 ~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaA------t~davfrlw~e~q~--wt~erw~l-gsgrvqt 285 (445)
T KOG2139|consen 215 FGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAA------TCDAVFRLWQENQS--WTKERWIL-GSGRVQT 285 (445)
T ss_pred cCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEe------cccceeeeehhccc--ceecceec-cCCceee
Confidence 5699999998866544444667789999999997766664 34567899965431 11111111 2225567
Q ss_pred EEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCc----------ceeeee--cC------C----CCCeEEEEEC
Q 013871 147 LNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGT----------HEGLVP--LR------K----EGPVHDVQWS 204 (434)
Q Consensus 147 ~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~----------~~~~v~--l~------~----~~~i~~v~ws 204 (434)
..|+|+|..|++..+. +..||.+...+. ....+. |. . -++++.++|.
T Consensus 286 acWspcGsfLLf~~sg-----------sp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawD 354 (445)
T KOG2139|consen 286 ACWSPCGSFLLFACSG-----------SPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWD 354 (445)
T ss_pred eeecCCCCEEEEEEcC-----------CceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeEC
Confidence 8899999999886543 233333322110 011111 11 0 4788999999
Q ss_pred cCCCEEEEEEccCCC------eEEEEecccceeEEeC------CcCeeEEEECC---CCCeEEEEecCCCCCeEEEEEc
Q 013871 205 YSGSEFAVVYGFMPA------SATIFNKKCRPILELG------SGPYNTVRWNP---KGKFLCLAGFGNLPGDMAFWDY 268 (434)
Q Consensus 205 pdg~~~av~~g~~~~------~v~l~d~~~~~~~~~~------~~~~~~i~~SP---~g~~l~~~~~~~~~g~i~iwd~ 268 (434)
|.|.++||++-..+. -|.+||.+..+.+++. ..+-..|.|+| +|.+|.++- ..|.+.-|++
T Consensus 355 psGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaW---sTGriq~ypl 430 (445)
T KOG2139|consen 355 PSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAW---STGRIQRYPL 430 (445)
T ss_pred CCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEe---ccCceEeeee
Confidence 999999998866552 4667888766666541 22234466666 455655554 3356666554
No 182
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.48 E-value=5.1e-12 Score=122.64 Aligned_cols=249 Identities=20% Similarity=0.286 Sum_probs=180.5
Q ss_pred CCCeeeecCCCcEEEEecCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCC
Q 013871 51 TWPSIRFSSDEAVACRMATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQ 130 (434)
Q Consensus 51 ~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~ 130 (434)
.+..++|-|||..|+.+.++.+.+||++++......+.|.+-|..++||-+ +..+| +++.+..|-+|+-..
T Consensus 14 ci~d~afkPDGsqL~lAAg~rlliyD~ndG~llqtLKgHKDtVycVAys~d-GkrFA-----SG~aDK~VI~W~~kl--- 84 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKD-GKRFA-----SGSADKSVIIWTSKL--- 84 (1081)
T ss_pred chheeEECCCCceEEEecCCEEEEEeCCCcccccccccccceEEEEEEccC-Cceec-----cCCCceeEEEecccc---
Confidence 344789999999999999999999999998877888888899999999998 55555 567778899998643
Q ss_pred CCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeee-ecCCCCCeEEEEECcCCCE
Q 013871 131 SQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLV-PLRKEGPVHDVQWSYSGSE 209 (434)
Q Consensus 131 ~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v-~l~~~~~i~~v~wspdg~~ 209 (434)
+-..+.-|...+-+|.|||-...|+.++-.+. .+|.-+ +..+ .......|.+.+|..||.+
T Consensus 85 --EG~LkYSH~D~IQCMsFNP~~h~LasCsLsdF-----------glWS~~-----qK~V~K~kss~R~~~CsWtnDGqy 146 (1081)
T KOG1538|consen 85 --EGILKYSHNDAIQCMSFNPITHQLASCSLSDF-----------GLWSPE-----QKSVSKHKSSSRIICCSWTNDGQY 146 (1081)
T ss_pred --cceeeeccCCeeeEeecCchHHHhhhcchhhc-----------cccChh-----hhhHHhhhhheeEEEeeecCCCcE
Confidence 11223346667778999998777654432221 122111 1111 1111467899999999999
Q ss_pred EEEEEccCCCeEEEEecccceeEEe-----CCcCeeEEEECCCCC-----eEEEEecCCCCCeEEEEEccCCEEEEEeeC
Q 013871 210 FAVVYGFMPASATIFNKKCRPILEL-----GSGPYNTVRWNPKGK-----FLCLAGFGNLPGDMAFWDYVDGKQLGTTRA 279 (434)
Q Consensus 210 ~av~~g~~~~~v~l~d~~~~~~~~~-----~~~~~~~i~~SP~g~-----~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~ 279 (434)
|++ |-.+|+|.|-+..+++...+ ...++-+++|+|... .+++...+. ++.++.+. |+.|..-..
T Consensus 147 lal--G~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~q---TLSFy~Ls-G~~Igk~r~ 220 (1081)
T KOG1538|consen 147 LAL--GMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQ---TLSFYQLS-GKQIGKDRA 220 (1081)
T ss_pred EEE--eccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccc---eeEEEEec-ceeeccccc
Confidence 996 77789999988766654433 367889999999642 666666544 77777664 566653332
Q ss_pred --CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceeeee-ecc-cceeeEEEcCCCC
Q 013871 280 --ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKK-MFD-KLFQAEWKPVSPD 338 (434)
Q Consensus 280 --~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~~~~~-~~~-~~~~~~w~p~~~~ 338 (434)
..+.++++-|+|+|++.|++ |+.+++|.-.|-.+-.. .++ =+|.|.-+|.+.+
T Consensus 221 L~FdP~CisYf~NGEy~LiGGs------dk~L~~fTR~GvrLGTvg~~D~WIWtV~~~PNsQ~ 277 (1081)
T KOG1538|consen 221 LNFDPCCISYFTNGEYILLGGS------DKQLSLFTRDGVRLGTVGEQDSWIWTVQAKPNSQY 277 (1081)
T ss_pred CCCCchhheeccCCcEEEEccC------CCceEEEeecCeEEeeccccceeEEEEEEccCCce
Confidence 36667899999999999999 99999999999776553 333 4788888887664
No 183
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.48 E-value=2.9e-11 Score=106.90 Aligned_cols=273 Identities=11% Similarity=0.194 Sum_probs=168.5
Q ss_pred cceEEec--CCCc-EEEEEecCCCCCCCcEEEEEc--CCCcEEEEEeecCcCCCCCCeeeecCCCc-----EEEEecCCe
Q 013871 2 LLLLTCL--RVGL-IIQTFQKSSTPQEKNVILWKT--ETGEAVYQLFQKNMTKTTWPSIRFSSDEA-----VACRMATNE 71 (434)
Q Consensus 2 V~~l~fS--P~g~-~L~t~~~~~~~~d~~v~iWd~--~~g~~~~~~~~~~~~~~~~~~~~~S~d~~-----~la~~~~~~ 71 (434)
+.++.|| |+-+ +|+..+ +.....+.|.|-.+ .+++.+..-... +...++.+.|.||.+ +|| ..++.
T Consensus 47 lya~~Ws~~~~~~~rla~gS-~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd--~~YP~tK~~wiPd~~g~~pdlLA-Ts~D~ 122 (364)
T KOG0290|consen 47 LYAMNWSVRPDKKFRLAVGS-FIEEYNNKVQIVQLDEDSGELVEDANFD--HPYPVTKLMWIPDSKGVYPDLLA-TSSDF 122 (364)
T ss_pred eeeeccccCCCcceeEEEee-eccccCCeeEEEEEccCCCceeccCCCC--CCCCccceEecCCccccCcchhh-cccCe
Confidence 4567777 4444 444443 22222345555544 455554332111 336677899999874 444 34579
Q ss_pred EEEEeCCCCCCcee---------eeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeeccc
Q 013871 72 IQFFDTTDFPKGIL---------YRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRC 142 (434)
Q Consensus 72 i~v~~~~~~~~~~~---------~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~ 142 (434)
+++|.+...+.... .......+++|.|.--...+|.+ ...+-++.||++.....+....++-.|..
T Consensus 123 LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igt-----SSiDTTCTiWdie~~~~~~vkTQLIAHDK 197 (364)
T KOG0290|consen 123 LRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGT-----SSIDTTCTIWDIETGVSGTVKTQLIAHDK 197 (364)
T ss_pred EEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEe-----ecccCeEEEEEEeeccccceeeEEEecCc
Confidence 99999874221111 11112357888887664455553 34556899999987321334667778899
Q ss_pred ceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecC--C-CCCeEEEEECcCCC-EEEEEEccCC
Q 013871 143 STVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR--K-EGPVHDVQWSYSGS-EFAVVYGFMP 218 (434)
Q Consensus 143 ~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~--~-~~~i~~v~wspdg~-~~av~~g~~~ 218 (434)
++..++|...|..+. ++...|.+.+ ++.+..... ..+..+ . ..+...++|++..- ++|. ..-..
T Consensus 198 EV~DIaf~~~s~~~F--ASvgaDGSvR-------mFDLR~leH--STIIYE~p~~~~pLlRLswnkqDpnymAT-f~~dS 265 (364)
T KOG0290|consen 198 EVYDIAFLKGSRDVF--ASVGADGSVR-------MFDLRSLEH--STIIYEDPSPSTPLLRLSWNKQDPNYMAT-FAMDS 265 (364)
T ss_pred ceeEEEeccCccceE--EEecCCCcEE-------EEEeccccc--ceEEecCCCCCCcceeeccCcCCchHHhh-hhcCC
Confidence 999999999887764 4444555555 344432221 112111 1 46788999998664 4443 23334
Q ss_pred CeEEEEecc--cceeEEe--CCcCeeEEEECCCCC-eEEEEecCCCCCeEEEEEccCCE------EEEEe-eCCCceEEE
Q 013871 219 ASATIFNKK--CRPILEL--GSGPYNTVRWNPKGK-FLCLAGFGNLPGDMAFWDYVDGK------QLGTT-RAECSVTSE 286 (434)
Q Consensus 219 ~~v~l~d~~--~~~~~~~--~~~~~~~i~~SP~g~-~l~~~~~~~~~g~i~iwd~~~~~------~i~~~-~~~~~~~~~ 286 (434)
.+|.+.|++ +.++..+ |.+.||.|+|.|+.. .||++|.| ..+.|||+.+.- .+..+ .++.+..+.
T Consensus 266 ~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD---~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~ 342 (364)
T KOG0290|consen 266 NKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDD---CQALIWDLQQMPRENGEDPILAYTAGGEVNQIQ 342 (364)
T ss_pred ceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCc---ceEEEEecccccccCCCCchhhhhccceeeeee
Confidence 489999997 6666666 899999999999875 89999955 599999998642 12222 334677799
Q ss_pred ECC-CCCEEEEEE
Q 013871 287 WSP-DGRYFMTAT 298 (434)
Q Consensus 287 wsp-dg~~l~tas 298 (434)
|+| .+..|+.+.
T Consensus 343 Ws~~~~Dwiai~~ 355 (364)
T KOG0290|consen 343 WSSSQPDWIAICF 355 (364)
T ss_pred ecccCCCEEEEEe
Confidence 995 455666655
No 184
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.48 E-value=9e-12 Score=110.60 Aligned_cols=255 Identities=13% Similarity=0.108 Sum_probs=169.6
Q ss_pred CCCCeeeecC-CCcEEEEe-cCCeEEEEeCCCCCCc--eeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEc
Q 013871 50 TTWPSIRFSS-DEAVACRM-ATNEIQFFDTTDFPKG--ILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYAC 125 (434)
Q Consensus 50 ~~~~~~~~S~-d~~~la~~-~~~~i~v~~~~~~~~~--~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~ 125 (434)
+.+.+++||| ...+++.+ -|++|++|++.+.... .....+...|-++.|+-++ ..+. .++.++.+++|++
T Consensus 28 DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsddg-skVf-----~g~~Dk~~k~wDL 101 (347)
T KOG0647|consen 28 DSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDG-SKVF-----SGGCDKQAKLWDL 101 (347)
T ss_pred cchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCC-ceEE-----eeccCCceEEEEc
Confidence 6677899999 44555344 5899999999873221 1122334468899999985 3333 2467789999999
Q ss_pred CCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECc
Q 013871 126 GKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSY 205 (434)
Q Consensus 126 ~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wsp 205 (434)
.+ + .+.+...|.+.+..+.|-+...+-++++ +.-|++.+.|+..+. .....+.-.+.++++..-.
T Consensus 102 ~S---~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~T-GSWDKTlKfWD~R~~----------~pv~t~~LPeRvYa~Dv~~ 166 (347)
T KOG0647|consen 102 AS---G-QVSQVAAHDAPVKTCHWVPGMNYQCLVT-GSWDKTLKFWDTRSS----------NPVATLQLPERVYAADVLY 166 (347)
T ss_pred cC---C-CeeeeeecccceeEEEEecCCCcceeEe-cccccceeecccCCC----------CeeeeeeccceeeehhccC
Confidence 87 4 6677888999999999988777555443 447888887654321 2222333356666665432
Q ss_pred CCCEEEEEEccCCCeEEEEeccccee-EEe----CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC--EEEEEee
Q 013871 206 SGSEFAVVYGFMPASATIFNKKCRPI-LEL----GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG--KQLGTTR 278 (434)
Q Consensus 206 dg~~~av~~g~~~~~v~l~d~~~~~~-~~~----~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~--~~i~~~~ 278 (434)
-++++ +..+..|.+|+++..+. +.. -+-.+.+|+.-+|....++|+ ..|.+.|..++.+ +.-.+++
T Consensus 167 ---pm~vV-ata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGs---iEGrv~iq~id~~~~~~nFtFk 239 (347)
T KOG0647|consen 167 ---PMAVV-ATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGS---IEGRVAIQYIDDPNPKDNFTFK 239 (347)
T ss_pred ---ceeEE-EecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeee---ecceEEEEecCCCCccCceeEE
Confidence 24544 34467999999964432 111 244567888888888888888 7789999988765 2222222
Q ss_pred CC-----------CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCce-ee--eeecccceeeEEEcCCCC
Q 013871 279 AE-----------CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL-FF--KKMFDKLFQAEWKPVSPD 338 (434)
Q Consensus 279 ~~-----------~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~-~~--~~~~~~~~~~~w~p~~~~ 338 (434)
.| .+..++|+|.-..|+|+++ ||.+..||-+-+. |. +.+.+.+.+..++-.+..
T Consensus 240 CHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGs------DGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~i 307 (347)
T KOG0647|consen 240 CHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGS------DGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSI 307 (347)
T ss_pred EeccCCCCCCceEEecceEeecccceEEEecC------CceEEEecchhhhhhhccCcCCCccceeEecCCCCE
Confidence 22 2334999999999999999 9999999986542 22 223445666666665543
No 185
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.47 E-value=3.8e-12 Score=112.52 Aligned_cols=205 Identities=17% Similarity=0.274 Sum_probs=140.3
Q ss_pred eeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCC--CC-----cee-----eeeecccceeEEEECCCC
Q 013871 86 YRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQ--SQ-----PLA-----RRSFFRCSTVQLNWNRGS 153 (434)
Q Consensus 86 ~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~--~~-----~i~-----~~~~~~~~~~~~~ws~~G 153 (434)
.+.|-..|.++.+.+..+.++. +++.++.+.+|++.+.+. .. .++ ..+.|+-.+..+.|-|-.
T Consensus 39 ~r~HgGsvNsL~id~tegryml-----SGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~D 113 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTEGRYML-----SGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPID 113 (397)
T ss_pred eccCCCccceeeeccccceEEe-----ecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeec
Confidence 3445566777777776555554 578889999999976331 00 011 123466677788999977
Q ss_pred CeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCC-EEEEEEccCCCeEEEEecccc-ee
Q 013871 154 TGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGS-EFAVVYGFMPASATIFNKKCR-PI 231 (434)
Q Consensus 154 ~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~-~~av~~g~~~~~v~l~d~~~~-~~ 231 (434)
+-+ .+++..|++.+.|...+ + +..+.+.-++.|++-+|||-.. +-.+..|..+-+|++.|++.. ..
T Consensus 114 tGm--FtssSFDhtlKVWDtnT-l---------Q~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~s 181 (397)
T KOG4283|consen 114 TGM--FTSSSFDHTLKVWDTNT-L---------QEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFS 181 (397)
T ss_pred Cce--eecccccceEEEeeccc-c---------eeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcce
Confidence 765 34566888888765422 1 2222233378999999999654 444556888889999999743 34
Q ss_pred EEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC-EEEEEeeC--------------C--CceEEEECCCCC
Q 013871 232 LEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG-KQLGTTRA--------------E--CSVTSEWSPDGR 292 (434)
Q Consensus 232 ~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~-~~i~~~~~--------------~--~~~~~~wspdg~ 292 (434)
+.+ |.+.|.++.|||...+++..|. -||.|++||++.- -+...+.. | .+..++|+.||+
T Consensus 182 H~LsGHr~~vlaV~Wsp~~e~vLatgs--aDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~ 259 (397)
T KOG4283|consen 182 HTLSGHRDGVLAVEWSPSSEWVLATGS--ADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDAR 259 (397)
T ss_pred eeeccccCceEEEEeccCceeEEEecC--CCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccch
Confidence 444 8899999999999997665442 5789999998743 22222221 2 233499999999
Q ss_pred EEEEEEcCCceeeCCcEEEEeec
Q 013871 293 YFMTATTAPRLQIDNGIKIFHHN 315 (434)
Q Consensus 293 ~l~tas~~prl~~D~~i~iw~~~ 315 (434)
++++.++ |+.+++|+..
T Consensus 260 ~l~~~gt------d~r~r~wn~~ 276 (397)
T KOG4283|consen 260 YLASCGT------DDRIRVWNME 276 (397)
T ss_pred hhhhccC------ccceEEeecc
Confidence 9999999 9999999983
No 186
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.46 E-value=4e-12 Score=120.57 Aligned_cols=198 Identities=12% Similarity=0.161 Sum_probs=134.8
Q ss_pred CcEEEEecCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeec
Q 013871 61 EAVACRMATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFF 140 (434)
Q Consensus 61 ~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~ 140 (434)
+.++++..||.+++.+-... ......-|...+.+-.|+|++...+. .|.+|.|++|+-.. -.-.+.--+
T Consensus 76 d~~~i~s~DGkf~il~k~~r-VE~sv~AH~~A~~~gRW~~dGtgLlt------~GEDG~iKiWSrsG----MLRStl~Q~ 144 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNKSAR-VERSISAHAAAISSGRWSPDGAGLLT------AGEDGVIKIWSRSG----MLRSTVVQN 144 (737)
T ss_pred ceEEEEcCCceEEEecccch-hhhhhhhhhhhhhhcccCCCCceeee------ecCCceEEEEeccc----hHHHHHhhc
Confidence 45677777888888764431 11223345556777899999755554 48899999999643 111122224
Q ss_pred ccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeec-CCCCCeEEEEECcCCCEEEEEEccCCC
Q 013871 141 RCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL-RKEGPVHDVQWSYSGSEFAVVYGFMPA 219 (434)
Q Consensus 141 ~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l-~~~~~i~~v~wspdg~~~av~~g~~~~ 219 (434)
...+.+++|.|+.+.++++... .++.-.+ ......+.- .++|-|.++.|+|.++.++ +|.+|-
T Consensus 145 ~~~v~c~~W~p~S~~vl~c~g~-------------h~~IKpL-~~n~k~i~WkAHDGiiL~~~W~~~s~lI~--sgGED~ 208 (737)
T KOG1524|consen 145 EESIRCARWAPNSNSIVFCQGG-------------HISIKPL-AANSKIIRWRAHDGLVLSLSWSTQSNIIA--SGGEDF 208 (737)
T ss_pred CceeEEEEECCCCCceEEecCC-------------eEEEeec-ccccceeEEeccCcEEEEeecCcccccee--ecCCce
Confidence 5577899999999998876321 1111111 111122221 2588999999999998888 799999
Q ss_pred eEEEEecccceeEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceEEEECCCCCEEEEE
Q 013871 220 SATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTA 297 (434)
Q Consensus 220 ~v~l~d~~~~~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~~~wspdg~~l~ta 297 (434)
+.++||..+..++.- |..++++++|+|+ +.++++++. +++ +.......+..++|||||..++.|
T Consensus 209 kfKvWD~~G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~n----t~R---------~~~p~~GSifnlsWS~DGTQ~a~g 274 (737)
T KOG1524|consen 209 RFKIWDAQGANLFTSAAEEYAITSVAFNPE-KDYLLWSYN----TAR---------FSSPRVGSIFNLSWSADGTQATCG 274 (737)
T ss_pred eEEeecccCcccccCChhccceeeeeeccc-cceeeeeee----eee---------ecCCCccceEEEEEcCCCceeecc
Confidence 999999998887754 7899999999999 777777643 233 222333466679999999999998
Q ss_pred Ec
Q 013871 298 TT 299 (434)
Q Consensus 298 s~ 299 (434)
+.
T Consensus 275 t~ 276 (737)
T KOG1524|consen 275 TS 276 (737)
T ss_pred cc
Confidence 87
No 187
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.45 E-value=6.2e-09 Score=100.48 Aligned_cols=261 Identities=15% Similarity=0.212 Sum_probs=159.3
Q ss_pred CCCcEEEEEc--CCCcE--EEEEeecCcCCCCCCeeeecCCCcEEEEec-----CCeEEEEeCCCC-CCc-eeeeee--c
Q 013871 24 QEKNVILWKT--ETGEA--VYQLFQKNMTKTTWPSIRFSSDEAVACRMA-----TNEIQFFDTTDF-PKG-ILYRLR--V 90 (434)
Q Consensus 24 ~d~~v~iWd~--~~g~~--~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-----~~~i~v~~~~~~-~~~-~~~~~~--~ 90 (434)
..+.|.+|++ .+|+. +..+.... .-. .++++|++++|.... .+.|..|++... ... ...+.. .
T Consensus 11 ~~~gI~~~~~d~~~g~l~~~~~~~~~~--~Ps--~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g 86 (345)
T PF10282_consen 11 KGGGIYVFRFDEETGTLTLVQTVAEGE--NPS--WLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGG 86 (345)
T ss_dssp SSTEEEEEEEETTTTEEEEEEEEEESS--SEC--CEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESS
T ss_pred CCCcEEEEEEcCCCCCceEeeeecCCC--CCc--eEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCC
Confidence 3478888887 55654 23322221 123 478999999988873 358999998764 211 222222 2
Q ss_pred CCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeee-ee-------------cccceeEEEECCCCCeE
Q 013871 91 PGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARR-SF-------------FRCSTVQLNWNRGSTGL 156 (434)
Q Consensus 91 ~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~-~~-------------~~~~~~~~~ws~~G~~l 156 (434)
.....++++|++ ..+.+.. -..+.|.++++... ..+... .. ......++.++|+|+++
T Consensus 87 ~~p~~i~~~~~g-~~l~van----y~~g~v~v~~l~~~---g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v 158 (345)
T PF10282_consen 87 SSPCHIAVDPDG-RFLYVAN----YGGGSVSVFPLDDD---GSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFV 158 (345)
T ss_dssp SCEEEEEECTTS-SEEEEEE----TTTTEEEEEEECTT---SEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEE
T ss_pred CCcEEEEEecCC-CEEEEEE----ccCCeEEEEEccCC---cccceeeeecccCCCCCcccccccccceeEEECCCCCEE
Confidence 244568888884 4433322 12467888888762 222111 11 11234578999999998
Q ss_pred EEEEEecccccCceeecceeEEEEeeCCcc-----eeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc--cc
Q 013871 157 LAVAQSDVDKTNQSYYGESKLNYLTTDGTH-----EGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK--CR 229 (434)
Q Consensus 157 ~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~-----~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~--~~ 229 (434)
++. +- |...|+.++..... ...+.+.....-+.++|+|+|+++.++ ....+.|.+|++. ..
T Consensus 159 ~v~-dl----------G~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~-~e~s~~v~v~~~~~~~g 226 (345)
T PF10282_consen 159 YVP-DL----------GADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVV-NELSNTVSVFDYDPSDG 226 (345)
T ss_dssp EEE-ET----------TTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEE-ETTTTEEEEEEEETTTT
T ss_pred EEE-ec----------CCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEe-cCCCCcEEEEeecccCC
Confidence 663 11 22335555544332 122344555566899999999998885 6678899999876 22
Q ss_pred ee---EEe---C-----CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEcc--CC--EEEEEee--CCCceEEEECCCCC
Q 013871 230 PI---LEL---G-----SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV--DG--KQLGTTR--AECSVTSEWSPDGR 292 (434)
Q Consensus 230 ~~---~~~---~-----~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~--~~--~~i~~~~--~~~~~~~~wspdg~ 292 (434)
.+ ... . ......|++||||++|.++..+. ..|.+|+++ ++ +.+..+. +..+..++++|||+
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~--~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~ 304 (345)
T PF10282_consen 227 SLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGS--NSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGR 304 (345)
T ss_dssp EEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTT--TEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSS
T ss_pred ceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccC--CEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCC
Confidence 22 111 1 12456799999999999988764 689999984 33 4444443 34577899999999
Q ss_pred EEEEEEcCCceeeCCcEEEEeec
Q 013871 293 YFMTATTAPRLQIDNGIKIFHHN 315 (434)
Q Consensus 293 ~l~tas~~prl~~D~~i~iw~~~ 315 (434)
+|+++... ++.|.+|+++
T Consensus 305 ~l~Va~~~-----s~~v~vf~~d 322 (345)
T PF10282_consen 305 YLYVANQD-----SNTVSVFDID 322 (345)
T ss_dssp EEEEEETT-----TTEEEEEEEE
T ss_pred EEEEEecC-----CCeEEEEEEe
Confidence 99999875 8899999983
No 188
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.45 E-value=1.4e-09 Score=105.83 Aligned_cols=296 Identities=16% Similarity=0.235 Sum_probs=196.1
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCc-EEEEEeecCcCCCCCCeeee-cCCCc-EEEEe-c-CCeEEEEe
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGE-AVYQLFQKNMTKTTWPSIRF-SSDEA-VACRM-A-TNEIQFFD 76 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~-~~~~~~~~~~~~~~~~~~~~-S~d~~-~la~~-~-~~~i~v~~ 76 (434)
|.++.|++.+..++..+ .|+.+.+|+...+. .+..+..... ..+..+.+ ++++. +++.. . ++.+.+|+
T Consensus 68 i~~~~~~~~~~~~~~~~-----~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 140 (466)
T COG2319 68 ITSIAFSPDGELLLSGS-----SDGTIKLWDLDNGEKLIKSLEGLHD--SSVSKLALSSPDGNSILLASSSLDGTVKLWD 140 (466)
T ss_pred EEEEEECCCCcEEEEec-----CCCcEEEEEcCCCceeEEEEeccCC--CceeeEEEECCCcceEEeccCCCCccEEEEE
Confidence 57889999999999877 78999999998886 5666655321 23334555 88887 44443 3 57999999
Q ss_pred CCC-CCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCe
Q 013871 77 TTD-FPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTG 155 (434)
Q Consensus 77 ~~~-~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~ 155 (434)
... .........+...|..+.++|++. .++. .. ...+.+++|++.. ...+.....+...+..+.|+|+|..
T Consensus 141 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~---~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~ 212 (466)
T COG2319 141 LSTPGKLIRTLEGHSESVTSLAFSPDGK-LLAS---GS-SLDGTIKLWDLRT---GKPLSTLAGHTDPVSSLAFSPDGGL 212 (466)
T ss_pred ecCCCeEEEEEecCcccEEEEEECCCCC-EEEe---cC-CCCCceEEEEcCC---CceEEeeccCCCceEEEEEcCCcce
Confidence 986 443344556667888999999954 2221 11 1578999999976 5667777778889999999999983
Q ss_pred EEEEEEecccccCceeecceeEEEEeeCCcceeee-ecC-CCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccce--e
Q 013871 156 LLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLV-PLR-KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP--I 231 (434)
Q Consensus 156 l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v-~l~-~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~--~ 231 (434)
++. +...|.....| +.... .... .+. +.... ...|+|++..++ .+..++.+++||.+... +
T Consensus 213 ~~~--~~~~d~~i~~w---------d~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~d~~~~~~~~~~~~~~~ 277 (466)
T COG2319 213 LIA--SGSSDGTIRLW---------DLSTG-KLLRSTLSGHSDSV-VSSFSPDGSLLA--SGSSDGTIRLWDLRSSSSLL 277 (466)
T ss_pred EEE--EecCCCcEEEE---------ECCCC-cEEeeecCCCCcce-eEeECCCCCEEE--EecCCCcEEEeeecCCCcEE
Confidence 322 22344444422 11111 1111 121 12222 228999996666 57789999999986332 2
Q ss_pred EE--eCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEee--CC-C-ceEEEECCCCCEEEEEEcCCceee
Q 013871 232 LE--LGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTR--AE-C-SVTSEWSPDGRYFMTATTAPRLQI 305 (434)
Q Consensus 232 ~~--~~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~--~~-~-~~~~~wspdg~~l~tas~~prl~~ 305 (434)
.. .|...+.++.|+|++..+++++. ++.+.+||..+........ .+ . +..+.|++++..++.+...
T Consensus 278 ~~~~~~~~~v~~~~~~~~~~~~~~~~~---d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 349 (466)
T COG2319 278 RTLSGHSSSVLSVAFSPDGKLLASGSS---DGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSD----- 349 (466)
T ss_pred EEEecCCccEEEEEECCCCCEEEEeeC---CCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecC-----
Confidence 22 25788999999999998888663 3579999998876555554 44 3 5558885454677776422
Q ss_pred CCcEEEEeecCce-eeeeecc-cceeeEEEcCC
Q 013871 306 DNGIKIFHHNGSL-FFKKMFD-KLFQAEWKPVS 336 (434)
Q Consensus 306 D~~i~iw~~~g~~-~~~~~~~-~~~~~~w~p~~ 336 (434)
|+.+++|++.... ....... .+..+.|.+ .
T Consensus 350 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 381 (466)
T COG2319 350 DGTIRLWDLRTGKPLKTLEGHSNVLSVSFSP-D 381 (466)
T ss_pred CCcEEeeecCCCceeEEecCCceEEEEEECC-C
Confidence 8889999997665 2222222 277888888 5
No 189
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.45 E-value=4.4e-11 Score=119.92 Aligned_cols=288 Identities=15% Similarity=0.162 Sum_probs=161.2
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCC--Cc-EEEEEeecCcCCCCCCeeeecCCCcEEEEecC-CeEEEEeC
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTET--GE-AVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT-NEIQFFDT 77 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~--g~-~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~-~~i~v~~~ 77 (434)
++|.+|||+|+||+++. .||.|.||.--. +. ...++.+ - |...+.++.||+||.+|.+++. +-+.+|.+
T Consensus 208 ~t~~~~spn~~~~Aa~d-----~dGrI~vw~d~~~~~~~~t~t~lH-W-H~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~ 280 (792)
T KOG1963|consen 208 ITCVALSPNERYLAAGD-----SDGRILVWRDFGSSDDSETCTLLH-W-HHDEVNSLSFSSDGAYLLSGGREGVLVLWQL 280 (792)
T ss_pred ceeEEeccccceEEEec-----cCCcEEEEeccccccccccceEEE-e-cccccceeEEecCCceEeecccceEEEEEee
Confidence 57899999999999988 789999996322 21 1122222 1 3377889999999999999964 68999999
Q ss_pred CCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeec--------ccceeEEEE
Q 013871 78 TDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFF--------RCSTVQLNW 149 (434)
Q Consensus 78 ~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~--------~~~~~~~~w 149 (434)
.+......-++ ...|..+.+||+++. .++... +..|.+...++......|...... ..=...+..
T Consensus 281 ~T~~kqfLPRL-gs~I~~i~vS~ds~~-~sl~~~-----DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~i 353 (792)
T KOG1963|consen 281 ETGKKQFLPRL-GSPILHIVVSPDSDL-YSLVLE-----DNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSI 353 (792)
T ss_pred cCCCccccccc-CCeeEEEEEcCCCCe-EEEEec-----CceEEEEeccchhhhhhccCccCCCccccccccccceeEEE
Confidence 87553222222 234889999999543 333322 456666666542212222211111 112234566
Q ss_pred CCCCCeEEEEEEecccccCcee--ecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccC------CC--
Q 013871 150 NRGSTGLLAVAQSDVDKTNQSY--YGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFM------PA-- 219 (434)
Q Consensus 150 s~~G~~l~~~~~~~~d~~~~~~--~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~------~~-- 219 (434)
+|.-+.+++.+ .....+.| |...++|.+.+.+..-..-.....-++..++.+-.|.+++.+.... ++
T Consensus 354 dpr~~~~vln~---~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~ 430 (792)
T KOG1963|consen 354 DPRTNSLVLNG---HPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEV 430 (792)
T ss_pred cCCCCceeecC---CCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceE
Confidence 77333333221 12222322 3333444443322110000000123566777777888877533221 22
Q ss_pred eEEEEecccce----e-EEe---CC-cCeeEEEECCCCC-eEEEEecCCCCCeEEEEEccCC------------EEEEEe
Q 013871 220 SATIFNKKCRP----I-LEL---GS-GPYNTVRWNPKGK-FLCLAGFGNLPGDMAFWDYVDG------------KQLGTT 277 (434)
Q Consensus 220 ~v~l~d~~~~~----~-~~~---~~-~~~~~i~~SP~g~-~l~~~~~~~~~g~i~iwd~~~~------------~~i~~~ 277 (434)
.+++|--..+. + ... |. ..+..+..+|... .+++++ .+|.++||-..+- +.+..+
T Consensus 431 ~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~---~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy 507 (792)
T KOG1963|consen 431 SLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTAS---VDGDFKIWVFTDDSNIYKKSSNWTCKAIGSY 507 (792)
T ss_pred EEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEec---cCCeEEEEEEecccccCcCccceEEeeeecc
Confidence 46667432111 1 111 33 3334455555544 777787 5579999987321 233444
Q ss_pred eCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecC
Q 013871 278 RAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG 316 (434)
Q Consensus 278 ~~~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g 316 (434)
.-..++.++||-||..| +.+. |+.|.|||+..
T Consensus 508 ~k~~i~a~~fs~dGsll-a~s~------~~~Itiwd~~~ 539 (792)
T KOG1963|consen 508 HKTPITALCFSQDGSLL-AVSF------DDTITIWDYDT 539 (792)
T ss_pred ccCcccchhhcCCCcEE-EEec------CCEEEEecCCC
Confidence 33366679999999654 4555 99999999965
No 190
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.45 E-value=1.1e-12 Score=127.11 Aligned_cols=208 Identities=13% Similarity=0.196 Sum_probs=143.6
Q ss_pred CCCCCceEEEEEcCCCCC--CCc-eeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeE-EEEeeCCccee
Q 013871 113 SKGSPASVQIYACGKDLQ--SQP-LARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKL-NYLTTDGTHEG 188 (434)
Q Consensus 113 ~~~~~~~v~i~~~~~~~~--~~~-i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l-~~l~~~~~~~~ 188 (434)
++|.++.|++|++..... .++ +.....|..-+..+..-.+|+.++ +...|.+.+.|.+.... +.+.+.+.
T Consensus 42 TgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlI---S~SsDtTVK~W~~~~~~~~c~stir~--- 115 (735)
T KOG0308|consen 42 TGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLI---SASSDTTVKVWNAHKDNTFCMSTIRT--- 115 (735)
T ss_pred ecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceE---EecCCceEEEeecccCcchhHhhhhc---
Confidence 467889999999986531 122 445555554444555555666433 23356677766543322 22222232
Q ss_pred eeecCCCCCeEEEEE-CcCCCEEEEEEccCCCeEEEEecccc---eeEEe-----------CCcCeeEEEECCCCCeEEE
Q 013871 189 LVPLRKEGPVHDVQW-SYSGSEFAVVYGFMPASATIFNKKCR---PILEL-----------GSGPYNTVRWNPKGKFLCL 253 (434)
Q Consensus 189 ~v~l~~~~~i~~v~w-spdg~~~av~~g~~~~~v~l~d~~~~---~~~~~-----------~~~~~~~i~~SP~g~~l~~ 253 (434)
|...|.+++. .++...+| +|+-|++|.+||+... .+.++ +..++.+++-++.|..|+.
T Consensus 116 -----H~DYVkcla~~ak~~~lva--SgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivs 188 (735)
T KOG0308|consen 116 -----HKDYVKCLAYIAKNNELVA--SGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVS 188 (735)
T ss_pred -----ccchheeeeecccCceeEE--ecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEe
Confidence 3788999998 55544444 7889999999998743 22221 3556788999999988888
Q ss_pred EecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc-eeee--eecccce
Q 013871 254 AGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS-LFFK--KMFDKLF 328 (434)
Q Consensus 254 ~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~-~~~~--~~~~~~~ 328 (434)
|| ..+.|+|||.++++.+..+.+| ++-.+-.++||+.+++|++ |++|++||+..+ +++. .+.+.+|
T Consensus 189 Gg---tek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sS------DgtIrlWdLgqQrCl~T~~vH~e~VW 259 (735)
T KOG0308|consen 189 GG---TEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASS------DGTIRLWDLGQQRCLATYIVHKEGVW 259 (735)
T ss_pred cC---cccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCC------CceEEeeeccccceeeeEEeccCceE
Confidence 77 6679999999999999888888 6667999999999999999 999999999654 4443 3556677
Q ss_pred eeEEEcCCCCCCCC
Q 013871 329 QAEWKPVSPDKFGD 342 (434)
Q Consensus 329 ~~~w~p~~~~~~~~ 342 (434)
.+.-.|.=..+|+.
T Consensus 260 aL~~~~sf~~vYsG 273 (735)
T KOG0308|consen 260 ALQSSPSFTHVYSG 273 (735)
T ss_pred EEeeCCCcceEEec
Confidence 77666655555554
No 191
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.45 E-value=3.7e-11 Score=111.80 Aligned_cols=229 Identities=14% Similarity=0.163 Sum_probs=148.2
Q ss_pred CcEEEEe-cCCeEEEEeCCCCCCc-eeeee--------------------ecCCeeEEEEeCCCCCeEEEEecCCCCCCc
Q 013871 61 EAVACRM-ATNEIQFFDTTDFPKG-ILYRL--------------------RVPGVAAFEVSKAPGSHVAVFVPESKGSPA 118 (434)
Q Consensus 61 ~~~la~~-~~~~i~v~~~~~~~~~-~~~~~--------------------~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~ 118 (434)
|+|+|.+ .+-+|.|||+.-.... ....+ |...|-+++|.-.-...+| +++.+.
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLa-----SgsaD~ 266 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLA-----SGSADK 266 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEE-----ecCCCc
Confidence 5799998 4679999998532210 01111 1112233444333223333 678889
Q ss_pred eEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCe
Q 013871 119 SVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPV 198 (434)
Q Consensus 119 ~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i 198 (434)
+|.+|++.. +++......|...+-++.|+|....+++.. ..|++.. |+.+...+..... ..-.+.|
T Consensus 267 TV~lWD~~~---g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsG--s~D~~V~-------l~D~R~~~~s~~~--wk~~g~V 332 (463)
T KOG0270|consen 267 TVKLWDVDT---GKPKSSITHHGKKVQTLEWHPYEPSVLLSG--SYDGTVA-------LKDCRDPSNSGKE--WKFDGEV 332 (463)
T ss_pred eEEEEEcCC---CCcceehhhcCCceeEEEecCCCceEEEec--cccceEE-------eeeccCccccCce--EEeccce
Confidence 999999998 888888888999999999999877665542 2344433 3333211111111 1226889
Q ss_pred EEEEECcCCCEEEEEEccCCCeEEEEecc--cceeEEe--CCcCeeEEEECCCCC-eEEEEecCCCCCeEEEEEccCC--
Q 013871 199 HDVQWSYSGSEFAVVYGFMPASATIFNKK--CRPILEL--GSGPYNTVRWNPKGK-FLCLAGFGNLPGDMAFWDYVDG-- 271 (434)
Q Consensus 199 ~~v~wspdg~~~av~~g~~~~~v~l~d~~--~~~~~~~--~~~~~~~i~~SP~g~-~l~~~~~~~~~g~i~iwd~~~~-- 271 (434)
..++|.|.....+++ +..+|.++-||+| ++++.++ |.++|.+|.+++.-. ++++++ .++.|.+|++..-
T Consensus 333 Ekv~w~~~se~~f~~-~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s---~d~~Vklw~~~~~~~ 408 (463)
T KOG0270|consen 333 EKVAWDPHSENSFFV-STDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTAS---TDKVVKLWKFDVDSP 408 (463)
T ss_pred EEEEecCCCceeEEE-ecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeecc---ccceEEEEeecCCCC
Confidence 999999987666654 7789999999997 4677766 899999999999876 455555 5679999997632
Q ss_pred EEEE--EeeCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc
Q 013871 272 KQLG--TTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS 317 (434)
Q Consensus 272 ~~i~--~~~~~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~ 317 (434)
+.+. .+.-....+++..|+-.++++.+.. .+.++|||+...
T Consensus 409 ~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~-----k~~~~vwd~~~~ 451 (463)
T KOG0270|consen 409 KSVKEHSFKLGRLHCFALDPDVAFTLAFGGE-----KAVLRVWDIFTN 451 (463)
T ss_pred cccccccccccceeecccCCCcceEEEecCc-----cceEEEeecccC
Confidence 2221 2222233346778887766555441 566999998543
No 192
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.44 E-value=1.6e-10 Score=113.76 Aligned_cols=222 Identities=11% Similarity=0.078 Sum_probs=138.7
Q ss_pred CCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcE-EEEe-cC---CeEEEEeCCCCCCceeeeee-cCC-eeEEE
Q 013871 25 EKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAV-ACRM-AT---NEIQFFDTTDFPKGILYRLR-VPG-VAAFE 97 (434)
Q Consensus 25 d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~-la~~-~~---~~i~v~~~~~~~~~~~~~~~-~~~-v~~~~ 97 (434)
...|.+-|.. |...+.+... .....+.|||||+. ++.. .. ..|.++|+..... ..+. .++ +....
T Consensus 168 ~~~l~~~d~d-g~~~~~~~~~----~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~---~~lt~~~g~~~~~~ 239 (419)
T PRK04043 168 KSNIVLADYT-LTYQKVIVKG----GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKK---EKIASSQGMLVVSD 239 (419)
T ss_pred cceEEEECCC-CCceeEEccC----CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcE---EEEecCCCcEEeeE
Confidence 4567776653 4444444332 12337899999984 5543 22 3788888866432 2222 333 55678
Q ss_pred EeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeE
Q 013871 98 VSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKL 177 (434)
Q Consensus 98 ~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l 177 (434)
|||+ +..+++.... .....|.++++.. + ....++..........|+|||+.|++.... . |...|
T Consensus 240 ~SPD-G~~la~~~~~--~g~~~Iy~~dl~~---g-~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr----~-----g~~~I 303 (419)
T PRK04043 240 VSKD-GSKLLLTMAP--KGQPDIYLYDTNT---K-TLTQITNYPGIDVNGNFVEDDKRIVFVSDR----L-----GYPNI 303 (419)
T ss_pred ECCC-CCEEEEEEcc--CCCcEEEEEECCC---C-cEEEcccCCCccCccEECCCCCEEEEEECC----C-----CCceE
Confidence 9999 4555444322 2245677777755 3 344444444444567899999999886432 1 34568
Q ss_pred EEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCC-------CeEEEEecccceeEEeCCc-CeeEEEECCCCC
Q 013871 178 NYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMP-------ASATIFNKKCRPILELGSG-PYNTVRWNPKGK 249 (434)
Q Consensus 178 ~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~-------~~v~l~d~~~~~~~~~~~~-~~~~i~~SP~g~ 249 (434)
|.+++.++...++... +. ....|||||+.++++....+ ..|.++|+.+.....+... ......|||||+
T Consensus 304 y~~dl~~g~~~rlt~~--g~-~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~~~~~~p~~SPDG~ 380 (419)
T PRK04043 304 FMKKLNSGSVEQVVFH--GK-NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTANGVNQFPRFSSDGG 380 (419)
T ss_pred EEEECCCCCeEeCccC--CC-cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCCCCcCCeEECCCCC
Confidence 9999887755455432 22 23599999999998764431 3788889877666666333 334589999999
Q ss_pred eEEEEecCCCCCeEEEEEccCCEE
Q 013871 250 FLCLAGFGNLPGDMAFWDYVDGKQ 273 (434)
Q Consensus 250 ~l~~~~~~~~~g~i~iwd~~~~~~ 273 (434)
.|+..........+.+.+++....
T Consensus 381 ~I~f~~~~~~~~~L~~~~l~g~~~ 404 (419)
T PRK04043 381 SIMFIKYLGNQSALGIIRLNYNKS 404 (419)
T ss_pred EEEEEEccCCcEEEEEEecCCCee
Confidence 988876544345677888865533
No 193
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.44 E-value=4.5e-11 Score=105.68 Aligned_cols=275 Identities=13% Similarity=0.188 Sum_probs=169.4
Q ss_pred CCcEEEEEeecCcCCCCCCeeeec--CCCc-EEEEe-----cCCeEEEEeCCCCCCceeee--eecC-CeeEEEEeCCCC
Q 013871 35 TGEAVYQLFQKNMTKTTWPSIRFS--SDEA-VACRM-----ATNEIQFFDTTDFPKGILYR--LRVP-GVAAFEVSKAPG 103 (434)
Q Consensus 35 ~g~~~~~~~~~~~~~~~~~~~~~S--~d~~-~la~~-----~~~~i~v~~~~~~~~~~~~~--~~~~-~v~~~~~sp~~~ 103 (434)
.++.++.|...- ... .+.|| +|.+ +||.+ ..|.|+|-.+.........+ +..+ .++.+-|.|+..
T Consensus 34 r~~eiy~Y~ap~---~ly-a~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~ 109 (364)
T KOG0290|consen 34 RRKEIYTYNAPW---PLY-AMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSK 109 (364)
T ss_pred ccceEEEecCCC---cee-eeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCcc
Confidence 345566665432 222 67787 3333 45544 23678887765432211111 1122 366778888742
Q ss_pred C----eEEEEecCCCCCCceEEEEEcCCCC-CCCceee-----eeecccceeEEEECCCCCeEEEEEEecccccCceeec
Q 013871 104 S----HVAVFVPESKGSPASVQIYACGKDL-QSQPLAR-----RSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYG 173 (434)
Q Consensus 104 ~----~ia~~~~~~~~~~~~v~i~~~~~~~-~~~~i~~-----~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g 173 (434)
. .+| .....+|||.+.... ...+.+. .+-|.+..+++.||.-...++...+- | .
T Consensus 110 g~~pdlLA-------Ts~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi--D-------T 173 (364)
T KOG0290|consen 110 GVYPDLLA-------TSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI--D-------T 173 (364)
T ss_pred ccCcchhh-------cccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc--c-------C
Confidence 1 222 233578999987421 1111121 23355677899999877776554332 2 2
Q ss_pred ceeEEEEeeC-CcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeEEe------CCcCeeEEEECC
Q 013871 174 ESKLNYLTTD-GTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL------GSGPYNTVRWNP 246 (434)
Q Consensus 174 ~~~l~~l~~~-~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~~------~~~~~~~i~~SP 246 (434)
.-++|.++.. ..+.....+.+..+|++++|...|..++. +-+.||.+++||++...-.++ ...+...++|++
T Consensus 174 TCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FA-SvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnk 252 (364)
T KOG0290|consen 174 TCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFA-SVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNK 252 (364)
T ss_pred eEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEE-EecCCCcEEEEEecccccceEEecCCCCCCcceeeccCc
Confidence 2345666553 22234445567889999999997765444 445589999999985432222 245667789998
Q ss_pred CC-CeEEEEecCCCCCeEEEEEccCC-EEEEEeeCC--CceEEEECCC-CCEEEEEEcCCceeeCCcEEEEeecCcee--
Q 013871 247 KG-KFLCLAGFGNLPGDMAFWDYVDG-KQLGTTRAE--CSVTSEWSPD-GRYFMTATTAPRLQIDNGIKIFHHNGSLF-- 319 (434)
Q Consensus 247 ~g-~~l~~~~~~~~~g~i~iwd~~~~-~~i~~~~~~--~~~~~~wspd-g~~l~tas~~prl~~D~~i~iw~~~g~~~-- 319 (434)
+. +++|+-..+. ..|.|.|++.- ..+..++.| .+..++|.|. +.+|+||+. |..+.|||++....
T Consensus 253 qDpnymATf~~dS--~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGD------D~qaliWDl~q~~~~~ 324 (364)
T KOG0290|consen 253 QDPNYMATFAMDS--NKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGD------DCQALIWDLQQMPREN 324 (364)
T ss_pred CCchHHhhhhcCC--ceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCC------cceEEEEecccccccC
Confidence 66 5777655443 58999998854 667777777 4555999997 457888988 99999999965322
Q ss_pred ------eeeecccceeeEEEcCCCC
Q 013871 320 ------FKKMFDKLFQAEWKPVSPD 338 (434)
Q Consensus 320 ------~~~~~~~~~~~~w~p~~~~ 338 (434)
.-.--.|+.++.|+|..+.
T Consensus 325 ~~dPilay~a~~EVNqi~Ws~~~~D 349 (364)
T KOG0290|consen 325 GEDPILAYTAGGEVNQIQWSSSQPD 349 (364)
T ss_pred CCCchhhhhccceeeeeeecccCCC
Confidence 1113368999999987554
No 194
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.43 E-value=1.1e-12 Score=134.47 Aligned_cols=244 Identities=15% Similarity=0.151 Sum_probs=163.4
Q ss_pred ceEEecCCCcE----EEEEecCCCCCCCcEEEEEcCC---CcEEEEEeecCcCCCCCCeeeecCCCc-EEEEec-CCeEE
Q 013871 3 LLLTCLRVGLI----IQTFQKSSTPQEKNVILWKTET---GEAVYQLFQKNMTKTTWPSIRFSSDEA-VACRMA-TNEIQ 73 (434)
Q Consensus 3 ~~l~fSP~g~~----L~t~~~~~~~~d~~v~iWd~~~---g~~~~~~~~~~~~~~~~~~~~~S~d~~-~la~~~-~~~i~ 73 (434)
..|+|++.|.. |+.+. +|++|.+||... +.....+...+.|...|..+.|++... +||++. +++|.
T Consensus 68 ~kL~W~~~g~~~~GlIaGG~-----edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~ 142 (1049)
T KOG0307|consen 68 NKLAWGSYGSHSHGLIAGGL-----EDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEIL 142 (1049)
T ss_pred eeeeecccCCCccceeeccc-----cCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEE
Confidence 46788888777 55544 899999999854 332222222333557888999999765 999885 57999
Q ss_pred EEeCCCCCCceee-ee-ecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeeccc--ceeEEEE
Q 013871 74 FFDTTDFPKGILY-RL-RVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRC--STVQLNW 149 (434)
Q Consensus 74 v~~~~~~~~~~~~-~~-~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~--~~~~~~w 149 (434)
|||+++.+..... .. ..+.|..++|.-.-..++| +.+..+++.|||+.. .+++...+.+.. ....+.|
T Consensus 143 iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILA-----S~s~sg~~~iWDlr~---~~pii~ls~~~~~~~~S~l~W 214 (1049)
T KOG0307|consen 143 IWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILA-----SGSPSGRAVIWDLRK---KKPIIKLSDTPGRMHCSVLAW 214 (1049)
T ss_pred EeccCCcCCCCCCCCCCCcccceEeccchhhhHHhh-----ccCCCCCceeccccC---CCcccccccCCCccceeeeee
Confidence 9999886543222 11 3457888888766333344 445567899999987 666666655543 3457899
Q ss_pred CCCCCeEEEEEEecc-cccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc
Q 013871 150 NRGSTGLLAVAQSDV-DKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC 228 (434)
Q Consensus 150 s~~G~~l~~~~~~~~-d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~ 228 (434)
+|++..-+++++.+. ....+ +|.+.-... -..+--.|...|.++.|++.+.+|++ ++..|+++.+|+.++
T Consensus 215 hP~~aTql~~As~dd~~Pviq-------lWDlR~ass-P~k~~~~H~~GilslsWc~~D~~lll-SsgkD~~ii~wN~~t 285 (1049)
T KOG0307|consen 215 HPDHATQLLVASGDDSAPVIQ-------LWDLRFASS-PLKILEGHQRGILSLSWCPQDPRLLL-SSGKDNRIICWNPNT 285 (1049)
T ss_pred CCCCceeeeeecCCCCCceeE-------eecccccCC-chhhhcccccceeeeccCCCCchhhh-cccCCCCeeEecCCC
Confidence 999876655554322 22222 333221111 11111235778999999999877777 566799999999964
Q ss_pred -ceeEEeCC--cCeeEEEECCCCC-eEEEEecCCCCCeEEEEEccCC
Q 013871 229 -RPILELGS--GPYNTVRWNPKGK-FLCLAGFGNLPGDMAFWDYVDG 271 (434)
Q Consensus 229 -~~~~~~~~--~~~~~i~~SP~g~-~l~~~~~~~~~g~i~iwd~~~~ 271 (434)
+.+.++.. .-+..+.|.|..- .++++. .+|.|.|+.+...
T Consensus 286 gEvl~~~p~~~nW~fdv~w~pr~P~~~A~as---fdgkI~I~sl~~~ 329 (1049)
T KOG0307|consen 286 GEVLGELPAQGNWCFDVQWCPRNPSVMAAAS---FDGKISIYSLQGT 329 (1049)
T ss_pred ceEeeecCCCCcceeeeeecCCCcchhhhhe---eccceeeeeeecC
Confidence 55667743 5677899999776 777777 5579999998754
No 195
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.42 E-value=6.9e-11 Score=108.52 Aligned_cols=208 Identities=15% Similarity=0.206 Sum_probs=155.1
Q ss_pred eeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCC----CCCceeeeeecccceeEEEECCCCCeEEEEEE
Q 013871 86 YRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDL----QSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQ 161 (434)
Q Consensus 86 ~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~----~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~ 161 (434)
...|...|-++.|+|-++..|| +++.+.+|.||++|... ...++..+.+|...+-.+.|+|....+++.+.
T Consensus 77 v~GHt~~vLDi~w~PfnD~vIA-----SgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag 151 (472)
T KOG0303|consen 77 VCGHTAPVLDIDWCPFNDCVIA-----SGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAG 151 (472)
T ss_pred ccCccccccccccCccCCceee-----cCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhcc
Confidence 3455667889999999888888 57788899999999632 25667788889888889999998887765443
Q ss_pred ecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeE-Ee--CCcC
Q 013871 162 SDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPIL-EL--GSGP 238 (434)
Q Consensus 162 ~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~-~~--~~~~ 238 (434)
.|.+ +..+++..+ +..+.+.+..-|+++.|+-||.+|+ +.+.|.+|+|||.+...+. +. |.+.
T Consensus 152 --~Dn~---------v~iWnv~tg-eali~l~hpd~i~S~sfn~dGs~l~--TtckDKkvRv~dpr~~~~v~e~~~heG~ 217 (472)
T KOG0303|consen 152 --SDNT---------VSIWNVGTG-EALITLDHPDMVYSMSFNRDGSLLC--TTCKDKKVRVIDPRRGTVVSEGVAHEGA 217 (472)
T ss_pred --CCce---------EEEEeccCC-ceeeecCCCCeEEEEEeccCCceee--eecccceeEEEcCCCCcEeeecccccCC
Confidence 2333 333333333 6677788899999999999999999 6788999999999755444 33 4444
Q ss_pred ee-EEEECCCCCeEEEEecCC-CCCeEEEEEccCCE---EEEEeeCC-CceEEEECCCCCEEEEEEcCCceeeCCcEEEE
Q 013871 239 YN-TVRWNPKGKFLCLAGFGN-LPGDMAFWDYVDGK---QLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIF 312 (434)
Q Consensus 239 ~~-~i~~SP~g~~l~~~~~~~-~~g~i~iwd~~~~~---~i~~~~~~-~~~~~~wspdg~~l~tas~~prl~~D~~i~iw 312 (434)
.+ .+.|--+|. |++.||.. .+.++-+||..+.+ .+..+... ++..--|.||...+..++.. |+.||-|
T Consensus 218 k~~Raifl~~g~-i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKG-----D~~IRYy 291 (472)
T KOG0303|consen 218 KPARAIFLASGK-IFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKG-----DSSIRYF 291 (472)
T ss_pred CcceeEEeccCc-eeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecC-----CcceEEE
Confidence 33 366778888 66666654 36789999987663 23333333 55567899999999888876 9999999
Q ss_pred eecCce
Q 013871 313 HHNGSL 318 (434)
Q Consensus 313 ~~~g~~ 318 (434)
.++...
T Consensus 292 Eit~d~ 297 (472)
T KOG0303|consen 292 EITNEP 297 (472)
T ss_pred EecCCC
Confidence 997764
No 196
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.42 E-value=1.3e-11 Score=117.27 Aligned_cols=90 Identities=20% Similarity=0.418 Sum_probs=75.2
Q ss_pred CCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeEEeC---CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC
Q 013871 195 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELG---SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG 271 (434)
Q Consensus 195 ~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~~~---~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~ 271 (434)
++.|+.++|||||++||.+ +.|+-++|||.....+...- -+...|++|||||+||++||-| --|.||.+..+
T Consensus 290 ~g~in~f~FS~DG~~LA~V--SqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGED---DLVtVwSf~er 364 (636)
T KOG2394|consen 290 EGSINEFAFSPDGKYLATV--SQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGED---DLVTVWSFEER 364 (636)
T ss_pred cccccceeEcCCCceEEEE--ecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCc---ceEEEEEeccc
Confidence 6789999999999999975 56899999998776654431 3567899999999999999955 48999999999
Q ss_pred EEEEEeeCC--CceEEEECC
Q 013871 272 KQLGTTRAE--CSVTSEWSP 289 (434)
Q Consensus 272 ~~i~~~~~~--~~~~~~wsp 289 (434)
+.+..-++| +++.++|.|
T Consensus 365 RVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 365 RVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred eEEEeccccccceeeEeecc
Confidence 999999888 555577774
No 197
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.41 E-value=2e-11 Score=118.10 Aligned_cols=286 Identities=14% Similarity=0.133 Sum_probs=165.6
Q ss_pred EEecCCC--c-EEEEEecCCCCCCCcEEEEEcCCCcEE---EEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeC
Q 013871 5 LTCLRVG--L-IIQTFQKSSTPQEKNVILWKTETGEAV---YQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDT 77 (434)
Q Consensus 5 l~fSP~g--~-~L~t~~~~~~~~d~~v~iWd~~~g~~~---~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~ 77 (434)
..|++.- . .|+.+. +|+.|.++|.....-- ++|..-..|...+..+.|-|.+..|++. +|.++++||+
T Consensus 55 ~sFs~~~n~eHiLavad-----E~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdv 129 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVAD-----EDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDV 129 (720)
T ss_pred ccccCCCCccceEEEec-----CCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeee
Confidence 4566532 2 344444 7899999998543211 1222222234566688999977777877 4569999999
Q ss_pred CCCCCcee--eeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCC--------------------CCCcee
Q 013871 78 TDFPKGIL--YRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDL--------------------QSQPLA 135 (434)
Q Consensus 78 ~~~~~~~~--~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~--------------------~~~~i~ 135 (434)
........ ...|...|.+++|+|.+...++ .++.++.|.||++.-.. +.++..
T Consensus 130 k~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~-----tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~ 204 (720)
T KOG0321|consen 130 KTSRLVGGRLNLGHTGSVKSECFMPTNPAVFC-----TGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLK 204 (720)
T ss_pred ccceeecceeecccccccchhhhccCCCccee-----eccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhh
Confidence 87543222 3455667999999998433333 47888999999986321 001111
Q ss_pred eee----ecccc---eeEEEECCCCCeEEEEEEecccccCceeeccee--EEEEeeCCcceeeeecC--CCCCeEEEEEC
Q 013871 136 RRS----FFRCS---TVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESK--LNYLTTDGTHEGLVPLR--KEGPVHDVQWS 204 (434)
Q Consensus 136 ~~~----~~~~~---~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~--l~~l~~~~~~~~~v~l~--~~~~i~~v~ws 204 (434)
... ..... .+.+.+..|...|+. ....|..++.|+-... .|..+-.+. ..++.. +.-.+.++...
T Consensus 205 kr~~k~kA~s~ti~ssvTvv~fkDe~tlaS--aga~D~~iKVWDLRk~~~~~r~ep~~~--~~~~t~skrs~G~~nL~lD 280 (720)
T KOG0321|consen 205 KRIRKWKAASNTIFSSVTVVLFKDESTLAS--AGAADSTIKVWDLRKNYTAYRQEPRGS--DKYPTHSKRSVGQVNLILD 280 (720)
T ss_pred ccccccccccCceeeeeEEEEEeccceeee--ccCCCcceEEEeecccccccccCCCcc--cCccCcccceeeeEEEEec
Confidence 000 00001 122334445554432 2335777776542211 000000000 001111 12344556666
Q ss_pred cCCCEEEEEEccCCCeEEEEecccc---eeEEeCCc----CeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEE-EEE
Q 013871 205 YSGSEFAVVYGFMPASATIFNKKCR---PILELGSG----PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQ-LGT 276 (434)
Q Consensus 205 pdg~~~av~~g~~~~~v~l~d~~~~---~~~~~~~~----~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~-i~~ 276 (434)
-.|.++.+ .++|+.|++||+... ++..+... ..+.-..||||.+|++|+ .++..++|.+++-+. ...
T Consensus 281 ssGt~L~A--sCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgS---sd~~ayiw~vs~~e~~~~~ 355 (720)
T KOG0321|consen 281 SSGTYLFA--SCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGS---SDEQAYIWVVSSPEAPPAL 355 (720)
T ss_pred CCCCeEEE--EecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccC---CCcceeeeeecCccCChhh
Confidence 66788774 566999999998643 33333222 223445799999999998 567999999987643 333
Q ss_pred eeCC--CceEEEECCCC-CEEEEEEcCCceeeCCcEEEEeec
Q 013871 277 TRAE--CSVTSEWSPDG-RYFMTATTAPRLQIDNGIKIFHHN 315 (434)
Q Consensus 277 ~~~~--~~~~~~wspdg-~~l~tas~~prl~~D~~i~iw~~~ 315 (434)
+.+| .++.++|.|.- .-++|++. |..++||++.
T Consensus 356 l~Ght~eVt~V~w~pS~~t~v~TcSd------D~~~kiW~l~ 391 (720)
T KOG0321|consen 356 LLGHTREVTTVRWLPSATTPVATCSD------DFRVKIWRLS 391 (720)
T ss_pred hhCcceEEEEEeeccccCCCceeecc------CcceEEEecc
Confidence 4445 56668997753 23666777 9999999984
No 198
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.41 E-value=2.5e-11 Score=107.16 Aligned_cols=249 Identities=13% Similarity=0.214 Sum_probs=158.3
Q ss_pred CCeEEEEeCCCCCCc---eeeeeecCCeeEEEEeCCCCCeEEEEecCCCCC--CceEEEEEcCCCCCC------Cceeee
Q 013871 69 TNEIQFFDTTDFPKG---ILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGS--PASVQIYACGKDLQS------QPLARR 137 (434)
Q Consensus 69 ~~~i~v~~~~~~~~~---~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~--~~~v~i~~~~~~~~~------~~i~~~ 137 (434)
+|+|++.++...... .....+...|..++-+|-...+++......++. .-..-||.+|..-.. ..++.+
T Consensus 39 dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~L 118 (370)
T KOG1007|consen 39 DNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASL 118 (370)
T ss_pred cceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcC
Confidence 478888877653321 112233446888888998656666554433322 235789999863211 111122
Q ss_pred e-ecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcce--eeeecC----CCCCeEEEEECc--CCC
Q 013871 138 S-FFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHE--GLVPLR----KEGPVHDVQWSY--SGS 208 (434)
Q Consensus 138 ~-~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~--~~v~l~----~~~~i~~v~wsp--dg~ 208 (434)
. ..-..+.++.|-|++..++.++ |. .|.+++...... ..+... ......+-+||| ||+
T Consensus 119 dteavg~i~cvew~Pns~klasm~----dn---------~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgn 185 (370)
T KOG1007|consen 119 DTEAVGKINCVEWEPNSDKLASMD----DN---------NIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGN 185 (370)
T ss_pred CHHHhCceeeEEEcCCCCeeEEec----cC---------ceEEEEcccCcchheeecccccccccceecccccCCCCccc
Confidence 1 2223667899999999988774 22 233333322211 111111 123456778999 899
Q ss_pred EEEEEEccCCCeEEEEecccce----eEEeCCcCeeEEEECCCCCe-EEEEecCCCCCeEEEEEccCC-EEEEEeeCC--
Q 013871 209 EFAVVYGFMPASATIFNKKCRP----ILELGSGPYNTVRWNPKGKF-LCLAGFGNLPGDMAFWDYVDG-KQLGTTRAE-- 280 (434)
Q Consensus 209 ~~av~~g~~~~~v~l~d~~~~~----~~~~~~~~~~~i~~SP~g~~-l~~~~~~~~~g~i~iwd~~~~-~~i~~~~~~-- 280 (434)
.+++. .++++..||+++.. +...|...+..+.|+|+-++ |+++| .+|.|+|||++.- ..+..+.+|
T Consensus 186 qv~tt---~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~g---DdgyvriWD~R~tk~pv~el~~HsH 259 (370)
T KOG1007|consen 186 QVATT---SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCG---DDGYVRIWDTRKTKFPVQELPGHSH 259 (370)
T ss_pred eEEEe---CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcC---CCccEEEEeccCCCccccccCCCce
Confidence 99953 36799999998432 33446777899999999885 55555 5689999998754 566666654
Q ss_pred CceEEEECCC-CCEEEEEEcCCceeeCCcEEEEeecCc-------------------------ee-------eeeecccc
Q 013871 281 CSVTSEWSPD-GRYFMTATTAPRLQIDNGIKIFHHNGS-------------------------LF-------FKKMFDKL 327 (434)
Q Consensus 281 ~~~~~~wspd-g~~l~tas~~prl~~D~~i~iw~~~g~-------------------------~~-------~~~~~~~~ 327 (434)
.+..+.|.|- .+.|+++++ |..|.+|....- ++ +..+-+.+
T Consensus 260 WvW~VRfn~~hdqLiLs~~S------Ds~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSV 333 (370)
T KOG1007|consen 260 WVWAVRFNPEHDQLILSGGS------DSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSV 333 (370)
T ss_pred EEEEEEecCccceEEEecCC------CceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccce
Confidence 7778999986 456777777 999999975110 01 12234579
Q ss_pred eeeEEEcCCCCCCCC
Q 013871 328 FQAEWKPVSPDKFGD 342 (434)
Q Consensus 328 ~~~~w~p~~~~~~~~ 342 (434)
|.++|+...|.+|..
T Consensus 334 Y~~aWSsadPWiFAS 348 (370)
T KOG1007|consen 334 YALAWSSADPWIFAS 348 (370)
T ss_pred EEEeeccCCCeeEEE
Confidence 999999999999986
No 199
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.39 E-value=2.1e-10 Score=104.35 Aligned_cols=266 Identities=15% Similarity=0.156 Sum_probs=157.1
Q ss_pred ceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCC-cEEEEecCCeEEEEeCCCCC
Q 013871 3 LLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDE-AVACRMATNEIQFFDTTDFP 81 (434)
Q Consensus 3 ~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~-~~la~~~~~~i~v~~~~~~~ 81 (434)
+.++|.+.=.-++... .|..|+|||-+. ++...+... .+..+.+++|-|.+ +.|+.+...-|.||..+...
T Consensus 102 r~~aWhqH~~~fava~-----nddvVriy~kss-t~pt~Lks~--sQrnvtclawRPlsaselavgCr~gIciW~~s~tl 173 (445)
T KOG2139|consen 102 RGVAWHQHIIAFAVAT-----NDDVVRIYDKSS-TCPTKLKSV--SQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTL 173 (445)
T ss_pred eeEeechhhhhhhhhc-----cCcEEEEeccCC-CCCceecch--hhcceeEEEeccCCcceeeeeecceeEEEEcCccc
Confidence 3455555333333333 789999999666 555555544 34788899999954 67777778899999975321
Q ss_pred Cc-ee------e---eeec---CCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEE
Q 013871 82 KG-IL------Y---RLRV---PGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLN 148 (434)
Q Consensus 82 ~~-~~------~---~~~~---~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ 148 (434)
.. .. . -+.. --|+++.|.+| +..++...+ ..+.|.||+... ++.+..+.+.......++
T Consensus 174 n~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~d-gt~l~tAS~----gsssi~iWdpdt---g~~~pL~~~glgg~slLk 245 (445)
T KOG2139|consen 174 NANRNIRMMSTHHLQVLQDPGHNPVTSMQWNED-GTILVTASF----GSSSIMIWDPDT---GQKIPLIPKGLGGFSLLK 245 (445)
T ss_pred ccccccccccccchhheeCCCCceeeEEEEcCC-CCEEeeccc----CcceEEEEcCCC---CCcccccccCCCceeeEE
Confidence 10 10 0 0111 24899999998 444443332 246899999987 555544445556677899
Q ss_pred ECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEec--
Q 013871 149 WNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNK-- 226 (434)
Q Consensus 149 ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~-- 226 (434)
|||||.+++..+ .|..-+ ||...-.-..+.- .+. .+.|....|+|+|+.+.+..... -++|.+
T Consensus 246 wSPdgd~lfaAt---~davfr-------lw~e~q~wt~erw-~lg-sgrvqtacWspcGsfLLf~~sgs---p~lysl~f 310 (445)
T KOG2139|consen 246 WSPDGDVLFAAT---CDAVFR-------LWQENQSWTKERW-ILG-SGRVQTACWSPCGSFLLFACSGS---PRLYSLTF 310 (445)
T ss_pred EcCCCCEEEEec---ccceee-------eehhcccceecce-ecc-CCceeeeeecCCCCEEEEEEcCC---ceEEEEee
Confidence 999999876532 333322 2211000001111 122 56999999999999888654332 233322
Q ss_pred --ccc------------eeEEe-----------CCcCeeEEEECCCCCeEEEEecCCC-----CCeEEEEEccCC---EE
Q 013871 227 --KCR------------PILEL-----------GSGPYNTVRWNPKGKFLCLAGFGNL-----PGDMAFWDYVDG---KQ 273 (434)
Q Consensus 227 --~~~------------~~~~~-----------~~~~~~~i~~SP~g~~l~~~~~~~~-----~g~i~iwd~~~~---~~ 273 (434)
+.. .+.++ --+...+++|.|.|.+|++.-.+.. .+.|.+||...- +.
T Consensus 311 ~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vel 390 (445)
T KOG2139|consen 311 DGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVEL 390 (445)
T ss_pred cCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEE
Confidence 100 11111 1456778999999999998754331 356777887654 22
Q ss_pred E--EEeeCCCceEEEECC---CCCEEEEEEc
Q 013871 274 L--GTTRAECSVTSEWSP---DGRYFMTATT 299 (434)
Q Consensus 274 i--~~~~~~~~~~~~wsp---dg~~l~tas~ 299 (434)
+ ....+.....+.|+| +|++|..|=+
T Consensus 391 s~cg~i~ge~P~~IsF~pl~n~g~lLsiaWs 421 (445)
T KOG2139|consen 391 SYCGMIGGEYPAYISFGPLKNEGRLLSIAWS 421 (445)
T ss_pred EecccccCCCCceEEeeecccCCcEEEEEec
Confidence 2 233344455566665 4666655555
No 200
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.39 E-value=3.5e-11 Score=114.29 Aligned_cols=175 Identities=15% Similarity=0.167 Sum_probs=127.2
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCC
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFP 81 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~ 81 (434)
|.|-.|||||.=|+|.+ +|+.|+||. .+|-.-.++.+.. ..+.|++|.|+++-++++..+.+.|=-+.-..
T Consensus 107 ~~~gRW~~dGtgLlt~G-----EDG~iKiWS-rsGMLRStl~Q~~---~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~ 177 (737)
T KOG1524|consen 107 ISSGRWSPDGAGLLTAG-----EDGVIKIWS-RSGMLRSTVVQNE---ESIRCARWAPNSNSIVFCQGGHISIKPLAANS 177 (737)
T ss_pred hhhcccCCCCceeeeec-----CCceEEEEe-ccchHHHHHhhcC---ceeEEEEECCCCCceEEecCCeEEEeeccccc
Confidence 56778999999999999 999999998 6675433333332 67779999999999988888887776665544
Q ss_pred CceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEE
Q 013871 82 KGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQ 161 (434)
Q Consensus 82 ~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~ 161 (434)
+....+-|..-|-++.|+|. ...|+ ++|.+-..++||-- ++.+.+-..+...+++++|+|+-.++ +++
T Consensus 178 k~i~WkAHDGiiL~~~W~~~-s~lI~-----sgGED~kfKvWD~~----G~~Lf~S~~~ey~ITSva~npd~~~~--v~S 245 (737)
T KOG1524|consen 178 KIIRWRAHDGLVLSLSWSTQ-SNIIA-----SGGEDFRFKIWDAQ----GANLFTSAAEEYAITSVAFNPEKDYL--LWS 245 (737)
T ss_pred ceeEEeccCcEEEEeecCcc-cccee-----ecCCceeEEeeccc----CcccccCChhccceeeeeecccccee--eee
Confidence 44445566666889999998 45554 47888899999964 67788888888899999999993332 221
Q ss_pred ecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEE
Q 013871 162 SDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASAT 222 (434)
Q Consensus 162 ~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~ 222 (434)
| +.+. +.-...|.|..++|||||.++++ |...|.+.
T Consensus 246 ---------~------nt~R--------~~~p~~GSifnlsWS~DGTQ~a~--gt~~G~v~ 281 (737)
T KOG1524|consen 246 ---------Y------NTAR--------FSSPRVGSIFNLSWSADGTQATC--GTSTGQLI 281 (737)
T ss_pred ---------e------eeee--------ecCCCccceEEEEEcCCCceeec--cccCceEE
Confidence 1 1111 11122689999999999999995 55455443
No 201
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.39 E-value=2.2e-12 Score=126.33 Aligned_cols=221 Identities=13% Similarity=0.116 Sum_probs=158.3
Q ss_pred EEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCc
Q 013871 5 LTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKG 83 (434)
Q Consensus 5 l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~ 83 (434)
+..=..++.|++++ +|..+-+|.+..-..+.+|.++. ..+.++.|++++.+++.+. +++|++||+......
T Consensus 34 lk~~~s~r~~~~Gg-----~~~k~~L~~i~kp~~i~S~~~he---spIeSl~f~~~E~LlaagsasgtiK~wDleeAk~v 105 (825)
T KOG0267|consen 34 LKIRKSSRSLVTGG-----EDEKVNLWAIGKPNAITSLTGHE---SPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIV 105 (825)
T ss_pred eeeeccceeeccCC-----CceeeccccccCCchhheeeccC---CcceeeecCcchhhhcccccCCceeeeehhhhhhh
Confidence 33333456777766 77888899887666666776654 7888999999999999885 579999999865433
Q ss_pred eeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEec
Q 013871 84 ILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSD 163 (434)
Q Consensus 84 ~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~ 163 (434)
.....+...+.++.|+|-+ .|. .++..+..+.+|++.. ..++..+..|...+-.+.++|+|.++... .
T Consensus 106 rtLtgh~~~~~sv~f~P~~-----~~~-a~gStdtd~~iwD~Rk---~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g---~ 173 (825)
T KOG0267|consen 106 RTLTGHLLNITSVDFHPYG-----EFF-ASGSTDTDLKIWDIRK---KGCSHTYKSHTRVVDVLRLSPDGRWVASG---G 173 (825)
T ss_pred hhhhccccCcceeeeccce-----EEe-ccccccccceehhhhc---cCceeeecCCcceeEEEeecCCCceeecc---C
Confidence 4455667788889999973 222 3456677899999976 56777766677777788999999986543 2
Q ss_pred ccccCceeecceeEEEEeeCCcceeeeecC-CCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccce-eEEe--CCcCe
Q 013871 164 VDKTNQSYYGESKLNYLTTDGTHEGLVPLR-KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP-ILEL--GSGPY 239 (434)
Q Consensus 164 ~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~-~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~-~~~~--~~~~~ 239 (434)
.|.+.+.|....+ ...-.+. +++.++.+.|+|..-.++ .|+.|+.+.+||++.-. +.+. ....+
T Consensus 174 ed~tvki~d~~ag----------k~~~ef~~~e~~v~sle~hp~e~Lla--~Gs~d~tv~f~dletfe~I~s~~~~~~~v 241 (825)
T KOG0267|consen 174 EDNTVKIWDLTAG----------KLSKEFKSHEGKVQSLEFHPLEVLLA--PGSSDRTVRFWDLETFEVISSGKPETDGV 241 (825)
T ss_pred Ccceeeeeccccc----------ccccccccccccccccccCchhhhhc--cCCCCceeeeeccceeEEeeccCCccCCc
Confidence 3566655443221 1111122 478999999999764444 79999999999998544 3333 35778
Q ss_pred eEEEECCCCCeEEEEecC
Q 013871 240 NTVRWNPKGKFLCLAGFG 257 (434)
Q Consensus 240 ~~i~~SP~g~~l~~~~~~ 257 (434)
.+..|+|+|+.+++|--.
T Consensus 242 ~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 242 RSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred eeeeecCCceeeecCchh
Confidence 999999999998877533
No 202
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.39 E-value=6.1e-11 Score=109.24 Aligned_cols=251 Identities=14% Similarity=0.165 Sum_probs=137.0
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcC--------C-----Cc---EEEEEeecCcCCCCCCeeeecCCCcEEE
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTE--------T-----GE---AVYQLFQKNMTKTTWPSIRFSSDEAVAC 65 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~--------~-----g~---~~~~~~~~~~~~~~~~~~~~S~d~~~la 65 (434)
|.++.|||+|..|++++ .++.|.+|... + .+ ....+.. |...+-.++|++|+.+++
T Consensus 68 VN~vRf~p~gelLASg~-----D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~---h~~diydL~Ws~d~~~l~ 139 (434)
T KOG1009|consen 68 VNVVRFSPDGELLASGG-----DGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRG---HRDDIYDLAWSPDSNFLV 139 (434)
T ss_pred eEEEEEcCCcCeeeecC-----CCceEEEEEecCcCCccccchhhhCccceEEEEEecc---cccchhhhhccCCCceee
Confidence 78999999999999988 88999999765 2 10 0112222 234444899999999999
Q ss_pred Ee-cCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCC------CCceEE-----EEEcCCCCCCCc
Q 013871 66 RM-ATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKG------SPASVQ-----IYACGKDLQSQP 133 (434)
Q Consensus 66 ~~-~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~------~~~~v~-----i~~~~~~~~~~~ 133 (434)
++ .++.+++||+..+.......-|..-+..++|.|- +.+++.-..+... ....+. +.....+..+..
T Consensus 140 s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl-~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~ 218 (434)
T KOG1009|consen 140 SGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPL-NQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREG 218 (434)
T ss_pred eeeccceEEEEEeccceeEeeccccccccceeecchh-hhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCc
Confidence 98 6899999999886654434444556788888886 3443322111100 000000 000000000111
Q ss_pred eeeeeecccce-----eEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcc--eeeeecCCCCCeEEEEECc-
Q 013871 134 LARRSFFRCST-----VQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH--EGLVPLRKEGPVHDVQWSY- 205 (434)
Q Consensus 134 i~~~~~~~~~~-----~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~--~~~v~l~~~~~i~~v~wsp- 205 (434)
...+ .|..+. ..++|+|+|..++.-+.. .+..+... .+.-|..+-.... ...++.. ..++..+.++|
T Consensus 219 ~s~r-LfhDeTlksFFrRlsfTPdG~llvtPag~-~~~g~~~~--~n~tYvfsrk~l~rP~~~lp~~-~k~~lavr~~pV 293 (434)
T KOG1009|consen 219 KSTR-LFHDETLKSFFRRLSFTPDGSLLVTPAGL-FKVGGGVF--RNTSYVFSRKDLKRPAARLPSP-KKPALAVRFSPV 293 (434)
T ss_pred ceee-eeecCchhhhhhhcccCCCCcEEEcccce-eeeCCcee--eceeEeeccccccCceeecCCC-CcceEEEEeeee
Confidence 1111 111111 256899999876542211 11111110 0111222110000 1111111 23444555544
Q ss_pred -----------------CCCEEEEEEccCCCeEEEEeccc-ceeE---EeCCcCeeEEEECCCCCeEEEEecCCCCCeEE
Q 013871 206 -----------------SGSEFAVVYGFMPASATIFNKKC-RPIL---ELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMA 264 (434)
Q Consensus 206 -----------------dg~~~av~~g~~~~~v~l~d~~~-~~~~---~~~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~ 264 (434)
-+-.|||++ -..+.+||.++ .++. .+|-..++.++||+||.+|++.+ .||...
T Consensus 294 y~elrp~~~~~~~~~lpyrlvfaiAt---~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS---~DGyCS 367 (434)
T KOG1009|consen 294 YYELRPLSSEKFLFVLPYRLVFAIAT---KNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSS---TDGFCS 367 (434)
T ss_pred EEEeccccccccccccccceEEEEee---cceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEec---cCCceE
Confidence 222345432 23899999974 4433 45888999999999999999998 667777
Q ss_pred EEEccCCE
Q 013871 265 FWDYVDGK 272 (434)
Q Consensus 265 iwd~~~~~ 272 (434)
+.-.+..+
T Consensus 368 ~vtfe~~e 375 (434)
T KOG1009|consen 368 LVTFEPWE 375 (434)
T ss_pred EEEEcchh
Confidence 76665543
No 203
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.38 E-value=3.4e-09 Score=103.20 Aligned_cols=277 Identities=18% Similarity=0.233 Sum_probs=181.4
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCc-EEEE-ecCCeEEEEeCCC
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEA-VACR-MATNEIQFFDTTD 79 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~-~la~-~~~~~i~v~~~~~ 79 (434)
|.++.|+|++.+++.... .|+.+++|++.++..+..+..+. ..+.++.|+|++. +++. ..++.|++|+...
T Consensus 158 v~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~ 230 (466)
T COG2319 158 VTSLAFSPDGKLLASGSS----LDGTIKLWDLRTGKPLSTLAGHT---DPVSSLAFSPDGGLLIASGSSDGTIRLWDLST 230 (466)
T ss_pred EEEEEECCCCCEEEecCC----CCCceEEEEcCCCceEEeeccCC---CceEEEEEcCCcceEEEEecCCCcEEEEECCC
Confidence 568999999998887651 38999999999888877776633 6677999999998 5665 3578999998764
Q ss_pred CCCce-eeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEE
Q 013871 80 FPKGI-LYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLA 158 (434)
Q Consensus 80 ~~~~~-~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~ 158 (434)
..... ....+.... ...|+|++ ..++ ..+.++.+++|++.... ..+.....+...+..+.|+|++..++.
T Consensus 231 ~~~~~~~~~~~~~~~-~~~~~~~~-~~~~-----~~~~d~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~ 301 (466)
T COG2319 231 GKLLRSTLSGHSDSV-VSSFSPDG-SLLA-----SGSSDGTIRLWDLRSSS--SLLRTLSGHSSSVLSVAFSPDGKLLAS 301 (466)
T ss_pred CcEEeeecCCCCcce-eEeECCCC-CEEE-----EecCCCcEEEeeecCCC--cEEEEEecCCccEEEEEECCCCCEEEE
Confidence 33211 122222332 22788885 3333 34566789999998632 223333445667778899998887655
Q ss_pred EEEecccccCceeecceeEEEEeeCCcceeeee--cCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccce-eEEeC
Q 013871 159 VAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVP--LRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP-ILELG 235 (434)
Q Consensus 159 ~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~--l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~-~~~~~ 235 (434)
... |..... + +.......... ..+...+..+.|.+++..+++ .+..++.+.+|+..... .....
T Consensus 302 -~~~--d~~~~~-------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~~~~~~~~~~~~~~~~~~ 368 (466)
T COG2319 302 -GSS--DGTVRL-------W--DLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVS-GGSDDGTIRLWDLRTGKPLKTLE 368 (466)
T ss_pred -eeC--CCcEEE-------E--EcCCCceEEEeeecccCCceEEEEECCCCCEEEE-eecCCCcEEeeecCCCceeEEec
Confidence 322 222222 2 21111111111 233457899999433245554 33456788889886544 22222
Q ss_pred Cc-CeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEE
Q 013871 236 SG-PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIF 312 (434)
Q Consensus 236 ~~-~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw 312 (434)
.. .+..+.+++ . ....+ ....++.+.+|+............. .+..+.+++++.++++++. ++.+++|
T Consensus 369 ~~~~~~~~~~~~-~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~ 439 (466)
T COG2319 369 GHSNVLSVSFSP-D-GRVVS-SGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSS------DNTIRLW 439 (466)
T ss_pred CCceEEEEEECC-C-CCEEE-EecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecC------CCcEEEE
Confidence 22 278999999 6 44443 1115679999999988877777664 5666999999999999888 9999999
Q ss_pred eecC
Q 013871 313 HHNG 316 (434)
Q Consensus 313 ~~~g 316 (434)
+...
T Consensus 440 ~~~~ 443 (466)
T COG2319 440 DLKT 443 (466)
T ss_pred eccC
Confidence 9877
No 204
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.37 E-value=1e-10 Score=104.51 Aligned_cols=191 Identities=12% Similarity=0.193 Sum_probs=127.7
Q ss_pred CcceEEecCCCc--EEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeC
Q 013871 1 MLLLLTCLRVGL--IIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDT 77 (434)
Q Consensus 1 ~V~~l~fSP~g~--~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~ 77 (434)
.|++|.|+|+-. +|++++ +|+.|.||++..-+++.++..+. ..|+.++..|.|++..+.+ |..++.||+
T Consensus 85 sitaL~F~~~~S~shLlS~s-----dDG~i~iw~~~~W~~~~slK~H~---~~Vt~lsiHPS~KLALsVg~D~~lr~WNL 156 (362)
T KOG0294|consen 85 SITALKFYPPLSKSHLLSGS-----DDGHIIIWRVGSWELLKSLKAHK---GQVTDLSIHPSGKLALSVGGDQVLRTWNL 156 (362)
T ss_pred ceEEEEecCCcchhheeeec-----CCCcEEEEEcCCeEEeeeecccc---cccceeEecCCCceEEEEcCCceeeeehh
Confidence 478999999886 899888 89999999999889999987765 4588999999999988874 679999998
Q ss_pred CCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEE
Q 013871 78 TDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLL 157 (434)
Q Consensus 78 ~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~ 157 (434)
-.+....+..+... .. .+.|+|.|.+.+
T Consensus 157 V~Gr~a~v~~L~~~-at---------------------------------------------------~v~w~~~Gd~F~ 184 (362)
T KOG0294|consen 157 VRGRVAFVLNLKNK-AT---------------------------------------------------LVSWSPQGDHFV 184 (362)
T ss_pred hcCccceeeccCCc-ce---------------------------------------------------eeEEcCCCCEEE
Confidence 66433222222111 11 245555555444
Q ss_pred EEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-cceeEEe--
Q 013871 158 AVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL-- 234 (434)
Q Consensus 158 ~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~-~~~~~~~-- 234 (434)
++.... ..+|.++..... ..+.....+.++.|- ++..+++ |..++.+.+||.. ..+.+.+
T Consensus 185 v~~~~~-----------i~i~q~d~A~v~---~~i~~~~r~l~~~~l-~~~~L~v--G~d~~~i~~~D~ds~~~~~~~~A 247 (362)
T KOG0294|consen 185 VSGRNK-----------IDIYQLDNASVF---REIENPKRILCATFL-DGSELLV--GGDNEWISLKDTDSDTPLTEFLA 247 (362)
T ss_pred EEeccE-----------EEEEecccHhHh---hhhhccccceeeeec-CCceEEE--ecCCceEEEeccCCCccceeeec
Confidence 332110 012222211110 011112346666665 4556663 7778999999987 4444444
Q ss_pred CCcCeeEEE--ECCCCCeEEEEecCCCCCeEEEEEccCC
Q 013871 235 GSGPYNTVR--WNPKGKFLCLAGFGNLPGDMAFWDYVDG 271 (434)
Q Consensus 235 ~~~~~~~i~--~SP~g~~l~~~~~~~~~g~i~iwd~~~~ 271 (434)
|...|..++ -.|++.+|++++ .||.|+|||++..
T Consensus 248 H~~RVK~i~~~~~~~~~~lvTaS---SDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 248 HENRVKDIASYTNPEHEYLVTAS---SDGFIKVWDIDME 283 (362)
T ss_pred chhheeeeEEEecCCceEEEEec---cCceEEEEEcccc
Confidence 788888876 378899999999 6789999998754
No 205
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.37 E-value=4.3e-09 Score=99.06 Aligned_cols=145 Identities=16% Similarity=0.262 Sum_probs=108.0
Q ss_pred eeecCCCCCeEEEEECcCCCEEEEEEccCCC-eEEEEecccceeEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEE
Q 013871 189 LVPLRKEGPVHDVQWSYSGSEFAVVYGFMPA-SATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAF 265 (434)
Q Consensus 189 ~v~l~~~~~i~~v~wspdg~~~av~~g~~~~-~v~l~d~~~~~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~i 265 (434)
.+++.+.+.|.=..+.-+++.+++ |..++ .+-+||.++..+..+ .-+.+..+..+|+|++++++. .++.|.+
T Consensus 353 ~iqv~~~~~VrY~r~~~~~e~~vi--gt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaN---dr~el~v 427 (668)
T COG4946 353 SIQVGKKGGVRYRRIQVDPEGDVI--GTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVAN---DRFELWV 427 (668)
T ss_pred eEEcCCCCceEEEEEccCCcceEE--eccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEc---CceEEEE
Confidence 345666778888888878776664 66677 999999998887766 457888999999999999886 5579999
Q ss_pred EEccCCE--EEEEeeCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceeeeeecccc--eeeEEEcCCCCCC
Q 013871 266 WDYVDGK--QLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKKMFDKL--FQAEWKPVSPDKF 340 (434)
Q Consensus 266 wd~~~~~--~i~~~~~~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~~~~~~~~~~--~~~~w~p~~~~~~ 340 (434)
.|++++. .+-.-+..-++.+.|||++++||-|-- .--+-..|+|+|+.|..++....+.- +.-+|.|++.+|+
T Consensus 428 ididngnv~~idkS~~~lItdf~~~~nsr~iAYafP--~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLY 504 (668)
T COG4946 428 IDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFP--EGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLY 504 (668)
T ss_pred EEecCCCeeEecccccceeEEEEEcCCceeEEEecC--cceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEE
Confidence 9999884 343333446677999999999998743 22335689999999987777655433 3445777776654
No 206
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.37 E-value=4.5e-12 Score=125.86 Aligned_cols=293 Identities=16% Similarity=0.176 Sum_probs=183.0
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC-CeEEEEeCCCC
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT-NEIQFFDTTDF 80 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~-~~i~v~~~~~~ 80 (434)
|+|+.|...|.|++|.+ .|.-|+||.++++.++.++.+++ ..++.++-+.+..++|.++. ..|++|.+...
T Consensus 193 Vyca~fDrtg~~Iitgs-----dd~lvKiwS~et~~~lAs~rGhs---~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~ 264 (1113)
T KOG0644|consen 193 VYCAIFDRTGRYIITGS-----DDRLVKIWSMETARCLASCRGHS---GDITDLAVSSNNTMIAAASNDKVIRVWRLPDG 264 (1113)
T ss_pred eeeeeeccccceEeecC-----ccceeeeeeccchhhhccCCCCc---cccchhccchhhhhhhhcccCceEEEEecCCC
Confidence 88999999999999998 89999999999999999988865 66667888888888888765 48999999987
Q ss_pred CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecc-cceeEEEECCCCCeEEEE
Q 013871 81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFR-CSTVQLNWNRGSTGLLAV 159 (434)
Q Consensus 81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~-~~~~~~~ws~~G~~l~~~ 159 (434)
....+...|...|++++|||-. +.+.++++++|+..-....-+-.-..+.. .-++.+.+-..|...+
T Consensus 265 ~pvsvLrghtgavtaiafsP~~----------sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~-- 332 (1113)
T KOG0644|consen 265 APVSVLRGHTGAVTAIAFSPRA----------SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFL-- 332 (1113)
T ss_pred chHHHHhccccceeeeccCccc----------cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccc--
Confidence 7767788888899999999962 45677899999975210000000000000 0111111111111110
Q ss_pred EEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-cceeEEe--CC
Q 013871 160 AQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL--GS 236 (434)
Q Consensus 160 ~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~-~~~~~~~--~~ 236 (434)
++ +-.++...|.+...-. +...+.-+..+.|...+.+ +...+..+.+|++- +...+.+ |.
T Consensus 333 -------Tg-s~d~ea~n~e~~~l~~--------~~~~lif~t~ssd~~~~~~-~ar~~~~~~vwnl~~g~l~H~l~ghs 395 (1113)
T KOG0644|consen 333 -------TG-SRDGEARNHEFEQLAW--------RSNLLIFVTRSSDLSSIVV-TARNDHRLCVWNLYTGQLLHNLMGHS 395 (1113)
T ss_pred -------cc-cCCcccccchhhHhhh--------hccceEEEeccccccccce-eeeeeeEeeeeecccchhhhhhcccc
Confidence 00 0011111222111111 1112222222323333333 23334467778874 3333333 66
Q ss_pred cCeeEEEECCCCCeEEE-EecCCCCCeEEEEEccCCEEEEEee-CC-CceEEEECCCCCEEEEEEcCCceeeCCcEEEEe
Q 013871 237 GPYNTVRWNPKGKFLCL-AGFGNLPGDMAFWDYVDGKQLGTTR-AE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFH 313 (434)
Q Consensus 237 ~~~~~i~~SP~g~~l~~-~~~~~~~g~i~iwd~~~~~~i~~~~-~~-~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~ 313 (434)
..+..+.++|....++. +| .+|...|||+-.+..+..+. +| ..++..||+||..++.... -|.+.|..
T Consensus 396 d~~yvLd~Hpfn~ri~msag---~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~------hgql~i~g 466 (1113)
T KOG0644|consen 396 DEVYVLDVHPFNPRIAMSAG---YDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDD------HGQLYILG 466 (1113)
T ss_pred cceeeeeecCCCcHhhhhcc---CCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCC------CCceEEec
Confidence 77888999997765554 55 56899999998875444332 33 5666999999999998776 78899988
Q ss_pred e-cCceeeeeecccceeeEEEcCCCCCC
Q 013871 314 H-NGSLFFKKMFDKLFQAEWKPVSPDKF 340 (434)
Q Consensus 314 ~-~g~~~~~~~~~~~~~~~w~p~~~~~~ 340 (434)
. .|+.......+.++--.++|.-+...
T Consensus 467 ~gqs~s~k~ak~dqffl~dyrplirdTn 494 (1113)
T KOG0644|consen 467 TGQSKSQKKAKYDQFFLGDYRPLIRDTN 494 (1113)
T ss_pred cCCCccccccccceEeecCccccccccc
Confidence 7 34445555666677667777544433
No 207
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.37 E-value=2e-10 Score=112.35 Aligned_cols=250 Identities=9% Similarity=0.104 Sum_probs=168.8
Q ss_pred CCCCeeeecCCCcEEEEecCCeEEEEeCCCCCCceeeee--ecCCeeE-EEEeCCCCCeEEEEecCCCCCCceEEEEEcC
Q 013871 50 TTWPSIRFSSDEAVACRMATNEIQFFDTTDFPKGILYRL--RVPGVAA-FEVSKAPGSHVAVFVPESKGSPASVQIYACG 126 (434)
Q Consensus 50 ~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~~~~~~~--~~~~v~~-~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~ 126 (434)
..+..++..++...+..+-+++++||+-....-.....+ +..-|.. +.+.+..+..+. .++.+..+.+|.+.
T Consensus 15 ~DVr~v~~~~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~-----~g~~D~~i~v~~~~ 89 (745)
T KOG0301|consen 15 SDVRAVAVTDGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLV-----VGGMDTTIIVFKLS 89 (745)
T ss_pred cchheeEecCCeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceE-----eecccceEEEEecC
Confidence 556667776666444444578999999755332111111 1111221 333332122232 25677889999998
Q ss_pred CCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcC
Q 013871 127 KDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYS 206 (434)
Q Consensus 127 ~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspd 206 (434)
+ ..++..+..|+..+|++.-..++. +.+...|.+.+.|--....+ ..-.|...|.+++.-|.
T Consensus 90 ~---~~P~~~LkgH~snVC~ls~~~~~~----~iSgSWD~TakvW~~~~l~~-----------~l~gH~asVWAv~~l~e 151 (745)
T KOG0301|consen 90 Q---AEPLYTLKGHKSNVCSLSIGEDGT----LISGSWDSTAKVWRIGELVY-----------SLQGHTASVWAVASLPE 151 (745)
T ss_pred C---CCchhhhhccccceeeeecCCcCc----eEecccccceEEecchhhhc-----------ccCCcchheeeeeecCC
Confidence 8 889999999999999999888877 23344666766543221111 12235789999999998
Q ss_pred CCEEEEEEccCCCeEEEEecc-cceeEEeCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCC--ce
Q 013871 207 GSEFAVVYGFMPASATIFNKK-CRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAEC--SV 283 (434)
Q Consensus 207 g~~~av~~g~~~~~v~l~d~~-~~~~~~~~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~--~~ 283 (434)
+ .|+ +|+.|..|++|.-. ...++..|+.-|..+++-|++.+|- ++ .||.|++||+ +++++....+|. +.
T Consensus 152 ~-~~v--TgsaDKtIklWk~~~~l~tf~gHtD~VRgL~vl~~~~flS-cs---NDg~Ir~w~~-~ge~l~~~~ghtn~vY 223 (745)
T KOG0301|consen 152 N-TYV--TGSADKTIKLWKGGTLLKTFSGHTDCVRGLAVLDDSHFLS-CS---NDGSIRLWDL-DGEVLLEMHGHTNFVY 223 (745)
T ss_pred C-cEE--eccCcceeeeccCCchhhhhccchhheeeeEEecCCCeEe-ec---CCceEEEEec-cCceeeeeeccceEEE
Confidence 7 444 79999999999763 3344555889999999999877764 55 6789999999 788888888873 33
Q ss_pred EEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceeeeeec--ccceeeEEEcCCC
Q 013871 284 TSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKKMF--DKLFQAEWKPVSP 337 (434)
Q Consensus 284 ~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~~~~~~~--~~~~~~~w~p~~~ 337 (434)
+++-.+++..|++++. |++++||+.. .+...... ..+|++..-+.+.
T Consensus 224 sis~~~~~~~Ivs~gE------DrtlriW~~~-e~~q~I~lPttsiWsa~~L~NgD 272 (745)
T KOG0301|consen 224 SISMALSDGLIVSTGE------DRTLRIWKKD-ECVQVITLPTTSIWSAKVLLNGD 272 (745)
T ss_pred EEEecCCCCeEEEecC------CceEEEeecC-ceEEEEecCccceEEEEEeeCCC
Confidence 4677788899999999 9999999976 55444433 3677777665543
No 208
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.35 E-value=3.7e-10 Score=100.74 Aligned_cols=250 Identities=17% Similarity=0.238 Sum_probs=158.4
Q ss_pred CCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC----CCceeeeeecCCeeEEEEeCCC-CCeEEEEecCCCCCCceEE
Q 013871 48 TKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF----PKGILYRLRVPGVAAFEVSKAP-GSHVAVFVPESKGSPASVQ 121 (434)
Q Consensus 48 ~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~----~~~~~~~~~~~~v~~~~~sp~~-~~~ia~~~~~~~~~~~~v~ 121 (434)
|++.+.++.|.+-|+.+|+++ |.+|.|||.... ......+.|...|..+.|.+-. +..+|+.. .++++.
T Consensus 12 h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS-----~Drtv~ 86 (361)
T KOG2445|consen 12 HKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCS-----YDRTVS 86 (361)
T ss_pred CcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEe-----cCCcee
Confidence 446778999999999999984 679999996432 2223345666778888887643 45666543 446789
Q ss_pred EEEcCCCCCC----Cce--eeeeecccceeEEEECCCCCeEEEEEEecccccCceeecce--eEEEEeeCCcce-eeeec
Q 013871 122 IYACGKDLQS----QPL--ARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGES--KLNYLTTDGTHE-GLVPL 192 (434)
Q Consensus 122 i~~~~~~~~~----~~i--~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~--~l~~l~~~~~~~-~~v~l 192 (434)
||.-...+.. +=+ +.+.-.+..+..+.|.|.-..|. ++....|.+.+.|..-. +|-...+..... ...++
T Consensus 87 iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLk-lA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp 165 (361)
T KOG2445|consen 87 IWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLK-LAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPP 165 (361)
T ss_pred eeeecccccccccceeEEEEEeecCCcceeEEEecchhcceE-EEEeccCcEEEEEecCCccccccchhhhhhhhccCCc
Confidence 9986322111 111 22233456778889998655433 34445677777663221 111111111100 01112
Q ss_pred C-CCCCeEEEEECcCC---CEEEEEEccCC-----CeEEEEec-----ccceeEEe--CCcCeeEEEECCC-CC---eEE
Q 013871 193 R-KEGPVHDVQWSYSG---SEFAVVYGFMP-----ASATIFNK-----KCRPILEL--GSGPYNTVRWNPK-GK---FLC 252 (434)
Q Consensus 193 ~-~~~~i~~v~wspdg---~~~av~~g~~~-----~~v~l~d~-----~~~~~~~~--~~~~~~~i~~SP~-g~---~l~ 252 (434)
. ...+..++.|+|.- ..||+ |++. +++.||.. +...+.++ ++.+|..|+|.|+ |+ +||
T Consensus 166 ~~~~~~~~CvsWn~sr~~~p~iAv--gs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lA 243 (361)
T KOG2445|consen 166 GKNKQPCFCVSWNPSRMHEPLIAV--GSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLA 243 (361)
T ss_pred ccccCcceEEeeccccccCceEEE--EcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEE
Confidence 2 25677899999742 35665 4443 37778743 22334444 6899999999996 33 677
Q ss_pred EEecCCCCCeEEEEEccC--------------------CEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEE
Q 013871 253 LAGFGNLPGDMAFWDYVD--------------------GKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIK 310 (434)
Q Consensus 253 ~~~~~~~~g~i~iwd~~~--------------------~~~i~~~~~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~ 310 (434)
+|. .+| |+||.+.. -+.+..+..| .+..+.|.-.|..|.+++. ||+||
T Consensus 244 vA~---kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGd------DG~VR 313 (361)
T KOG2445|consen 244 VAT---KDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGD------DGCVR 313 (361)
T ss_pred Eee---cCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCC------Cceee
Confidence 777 557 99999873 1355666666 4677999999999999999 99999
Q ss_pred EEeec
Q 013871 311 IFHHN 315 (434)
Q Consensus 311 iw~~~ 315 (434)
+|..+
T Consensus 314 LWkan 318 (361)
T KOG2445|consen 314 LWKAN 318 (361)
T ss_pred ehhhh
Confidence 99853
No 209
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.34 E-value=5e-10 Score=102.75 Aligned_cols=278 Identities=10% Similarity=0.106 Sum_probs=168.5
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCC------cEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEE
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETG------EAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQF 74 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g------~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v 74 (434)
|.+|.||.+|++|++.+ .|..++||++... +++.-. .+. |...+-|+.|.....++.++. +++|..
T Consensus 59 iNAlqFS~N~~~L~SGG-----DD~~~~~W~~de~~~~k~~KPI~~~-~~~-H~SNIF~L~F~~~N~~~~SG~~~~~VI~ 131 (609)
T KOG4227|consen 59 INALQFSHNDRFLASGG-----DDMHGRVWNVDELMVRKTPKPIGVM-EHP-HRSNIFSLEFDLENRFLYSGERWGTVIK 131 (609)
T ss_pred cceeeeccCCeEEeecC-----CcceeeeechHHHHhhcCCCCceec-cCc-cccceEEEEEccCCeeEecCCCcceeEe
Confidence 68999999999999988 8899999998532 333322 221 445666999998888888885 479999
Q ss_pred EeCCCCCCceeeeee--cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCC-CCCceeeeeecccceeEEEECC
Q 013871 75 FDTTDFPKGILYRLR--VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDL-QSQPLARRSFFRCSTVQLNWNR 151 (434)
Q Consensus 75 ~~~~~~~~~~~~~~~--~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~-~~~~i~~~~~~~~~~~~~~ws~ 151 (434)
.|+.+.+...+.... -..|..+..+|. ++++++.. ..+.|.+|++.... ...++ ....+.....++.|+|
T Consensus 132 HDiEt~qsi~V~~~~~~~~~VY~m~~~P~-DN~~~~~t-----~~~~V~~~D~Rd~~~~~~~~-~~AN~~~~F~t~~F~P 204 (609)
T KOG4227|consen 132 HDIETKQSIYVANENNNRGDVYHMDQHPT-DNTLIVVT-----RAKLVSFIDNRDRQNPISLV-LPANSGKNFYTAEFHP 204 (609)
T ss_pred eecccceeeeeecccCcccceeecccCCC-CceEEEEe-----cCceEEEEeccCCCCCCcee-eecCCCccceeeeecC
Confidence 998775433222111 225888999998 66665543 34688999986521 11222 2222334455778999
Q ss_pred CCCeEEEEEEecccccCceeecceeEEEEeeCCc----ceeeeecCC-CCCeEEEEECcCCCEEEEEEccCCCeEEEEec
Q 013871 152 GSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGT----HEGLVPLRK-EGPVHDVQWSYSGSEFAVVYGFMPASATIFNK 226 (434)
Q Consensus 152 ~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~----~~~~v~l~~-~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~ 226 (434)
.--.|++.++.. +..+||.+..... ......|.. ...-..+.|+|+|.+|..+.... .-.+||+
T Consensus 205 ~~P~Li~~~~~~---------~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~--~P~~~D~ 273 (609)
T KOG4227|consen 205 ETPALILVNSET---------GGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGK--CPLYFDF 273 (609)
T ss_pred CCceeEEecccc---------CCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccC--CCEEeee
Confidence 888776654321 2223444322110 001111221 22335789999999998654332 2345565
Q ss_pred cc--ceeEEeC---Cc-----CeeEEEECCCCCeEEEEecCCCCCeEEEEEccC-----C------------------EE
Q 013871 227 KC--RPILELG---SG-----PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD-----G------------------KQ 273 (434)
Q Consensus 227 ~~--~~~~~~~---~~-----~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~-----~------------------~~ 273 (434)
-. -.++++. .+ .+.+++|--|-. +++|+ .+-.|++|-+-. | +.
T Consensus 274 ~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~-v~tGS---D~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~ 349 (609)
T KOG4227|consen 274 ISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYT-VATGS---DHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKE 349 (609)
T ss_pred ecccceeEeccCCCCcceeeeeeeeeeeeccee-eeccC---cccceEEEecCCCccccCccccCcchhhCchhheecce
Confidence 32 2233332 12 344577765544 66655 335899997641 1 12
Q ss_pred EEEeeCCCc--eEEEECCCCCEEEEEEcCCceeeCCcEEEEee
Q 013871 274 LGTTRAECS--VTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH 314 (434)
Q Consensus 274 i~~~~~~~~--~~~~wspdg~~l~tas~~prl~~D~~i~iw~~ 314 (434)
+..+.+|.. ..+.|+|....|++.+- .+.||||.-
T Consensus 350 ~~VLrGHRSv~NQVRF~~H~~~l~SSGV------E~~~KlWS~ 386 (609)
T KOG4227|consen 350 LTVLRGHRSVPNQVRFSQHNNLLVSSGV------ENSFKLWSD 386 (609)
T ss_pred eEEEecccccccceeecCCcceEeccch------hhheecccc
Confidence 344566633 34999999888888877 999999963
No 210
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.34 E-value=1.9e-10 Score=107.22 Aligned_cols=235 Identities=12% Similarity=0.173 Sum_probs=153.8
Q ss_pred CCcEEEEEecCCCCCCCcEEEEEcCCCcEEE---EEe----------e-----cCcCCCCCCeeeecCCC-cEEEEe-cC
Q 013871 10 VGLIIQTFQKSSTPQEKNVILWKTETGEAVY---QLF----------Q-----KNMTKTTWPSIRFSSDE-AVACRM-AT 69 (434)
Q Consensus 10 ~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~---~~~----------~-----~~~~~~~~~~~~~S~d~-~~la~~-~~ 69 (434)
.|+|+|.+. .|..|.|||+.=-..+. ++. + .+.|...+..+.|..+- ..||++ .|
T Consensus 191 ~gNyvAiGt-----mdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD 265 (463)
T KOG0270|consen 191 AGNYVAIGT-----MDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSAD 265 (463)
T ss_pred CcceEEEec-----cCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCC
Confidence 378999888 88999999984221111 110 0 01244555578888754 567776 46
Q ss_pred CeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEE
Q 013871 70 NEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNW 149 (434)
Q Consensus 70 ~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~w 149 (434)
.+|.+||+...........+...|..++|+|.....+. +++.+++|.++++... ......=-+.+++-.+.|
T Consensus 266 ~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LL-----sGs~D~~V~l~D~R~~---~~s~~~wk~~g~VEkv~w 337 (463)
T KOG0270|consen 266 KTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLL-----SGSYDGTVALKDCRDP---SNSGKEWKFDGEVEKVAW 337 (463)
T ss_pred ceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEE-----eccccceEEeeeccCc---cccCceEEeccceEEEEe
Confidence 79999999987765555666778999999998544443 4677889999998642 111111124556778999
Q ss_pred CCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecC-CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc
Q 013871 150 NRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR-KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC 228 (434)
Q Consensus 150 s~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~-~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~ 228 (434)
+|......++... | | .+|.+++........++. |+++|..+++++.-..+.+ ++..++.+.+|++..
T Consensus 338 ~~~se~~f~~~td--d-------G--~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~-t~s~d~~Vklw~~~~ 405 (463)
T KOG0270|consen 338 DPHSENSFFVSTD--D-------G--TVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLS-TASTDKVVKLWKFDV 405 (463)
T ss_pred cCCCceeEEEecC--C-------c--eEEeeecCCCCCceeEEEeccCCcceEEecCCCCccee-eccccceEEEEeecC
Confidence 9987766554321 1 1 356666554434444443 6889999999987777766 577889999998752
Q ss_pred c-----eeEEeCCcCeeEEEECCCCCeE-EEEecCCCCCeEEEEEccCCE
Q 013871 229 R-----PILELGSGPYNTVRWNPKGKFL-CLAGFGNLPGDMAFWDYVDGK 272 (434)
Q Consensus 229 ~-----~~~~~~~~~~~~i~~SP~g~~l-~~~~~~~~~g~i~iwd~~~~~ 272 (434)
. ..+++.-+...|+++.|+--++ ++|| ..+.++|||+.+..
T Consensus 406 ~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG---~k~~~~vwd~~~~~ 452 (463)
T KOG0270|consen 406 DSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGG---EKAVLRVWDIFTNS 452 (463)
T ss_pred CCCcccccccccccceeecccCCCcceEEEecC---ccceEEEeecccCh
Confidence 2 1233434446677888877644 4444 44689999987764
No 211
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.34 E-value=5.2e-11 Score=115.14 Aligned_cols=235 Identities=14% Similarity=0.212 Sum_probs=157.1
Q ss_pred ecCCCcEEEEe---cCCeEEEEeCCCCCCceee---e-eecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCC
Q 013871 57 FSSDEAVACRM---ATNEIQFFDTTDFPKGILY---R-LRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDL 129 (434)
Q Consensus 57 ~S~d~~~la~~---~~~~i~v~~~~~~~~~~~~---~-~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~ 129 (434)
|..+.+++|.- ..|.|-||+++.......- . .....|+++.|.|-.+..+|+ .+.++.|+||.++...
T Consensus 587 fcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAV-----a~ddg~i~lWr~~a~g 661 (1012)
T KOG1445|consen 587 FCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAV-----ATDDGQINLWRLTANG 661 (1012)
T ss_pred eeeccceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeee-----cccCceEEEEEeccCC
Confidence 34455555542 3579999999875532211 1 223468999999987788886 3567899999997643
Q ss_pred ----CCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECc
Q 013871 130 ----QSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSY 205 (434)
Q Consensus 130 ----~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wsp 205 (434)
...+...++.|...++.++|+|-...++..++ .|.+++ ||.+..... ..--..+.+.|.+++|||
T Consensus 662 l~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~as--yd~Ti~-------lWDl~~~~~--~~~l~gHtdqIf~~AWSp 730 (1012)
T KOG1445|consen 662 LPENEMTPEKILTIHGEKITSLRFHPLAADVLAVAS--YDSTIE-------LWDLANAKL--YSRLVGHTDQIFGIAWSP 730 (1012)
T ss_pred CCcccCCcceeeecccceEEEEEecchhhhHhhhhh--ccceee-------eeehhhhhh--hheeccCcCceeEEEECC
Confidence 24556677889999999999997766554432 333433 444432222 222234578999999999
Q ss_pred CCCEEEEEEccCCCeEEEEecccce--eEEeCCcCe----eEEEECCCCCeEEEEecCCC-CCeEEEEEccCCE--EEEE
Q 013871 206 SGSEFAVVYGFMPASATIFNKKCRP--ILELGSGPY----NTVRWNPKGKFLCLAGFGNL-PGDMAFWDYVDGK--QLGT 276 (434)
Q Consensus 206 dg~~~av~~g~~~~~v~l~d~~~~~--~~~~~~~~~----~~i~~SP~g~~l~~~~~~~~-~g~i~iwd~~~~~--~i~~ 276 (434)
||+++|. -+.|+++++|+-+..+ +++ +.+++ -.|.|.-||+++++.||+.. ...|.+||.++.. .+.+
T Consensus 731 dGr~~At--VcKDg~~rVy~Prs~e~pv~E-g~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t 807 (1012)
T KOG1445|consen 731 DGRRIAT--VCKDGTLRVYEPRSREQPVYE-GKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYT 807 (1012)
T ss_pred CCcceee--eecCceEEEeCCCCCCCcccc-CCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCccee
Confidence 9999995 4678999999986433 333 23333 35899999999999999863 5688999977542 2322
Q ss_pred e---eCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec
Q 013871 277 T---RAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN 315 (434)
Q Consensus 277 ~---~~~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~ 315 (434)
. .++.+..-.+.+|...|+..+.. |..|.+|.+.
T Consensus 808 ~~lDvaps~LvP~YD~Ds~~lfltGKG-----D~~v~~yEv~ 844 (1012)
T KOG1445|consen 808 QVLDVAPSPLVPHYDYDSNVLFLTGKG-----DRFVNMYEVI 844 (1012)
T ss_pred eeecccCccccccccCCCceEEEecCC-----CceEEEEEec
Confidence 2 12244446778887765544443 8999999873
No 212
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.34 E-value=2.4e-08 Score=94.77 Aligned_cols=262 Identities=12% Similarity=0.069 Sum_probs=151.9
Q ss_pred CcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-----------CCeEEEEeCCCCCCceeeeeecC---
Q 013871 26 KNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-----------TNEIQFFDTTDFPKGILYRLRVP--- 91 (434)
Q Consensus 26 ~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-----------~~~i~v~~~~~~~~~~~~~~~~~--- 91 (434)
++|.|.|..+++.+..+.... .+....|||++.|+.+. ++.|.+||..+... ..++.++
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~-----~P~~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~--~~~i~~p~~p 99 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGF-----LPNPVVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLP--IADIELPEGP 99 (352)
T ss_pred ceEEEEECCCCEEEEEEEccC-----CCceeECCCCCEEEEEeccccccccCCCCCEEEEEECccCcE--EeEEccCCCc
Confidence 789999999999988887643 22345999999777653 37999999988653 3333321
Q ss_pred ------CeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEeccc
Q 013871 92 ------GVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVD 165 (434)
Q Consensus 92 ------~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d 165 (434)
....+.+||++ ..+.++. ....+.|.+.|+.. ++.+.+...-. ...-+.++.++..+. + .|
T Consensus 100 ~~~~~~~~~~~~ls~dg-k~l~V~n---~~p~~~V~VvD~~~---~kvv~ei~vp~-~~~vy~t~e~~~~~~-~----~D 166 (352)
T TIGR02658 100 RFLVGTYPWMTSLTPDN-KTLLFYQ---FSPSPAVGVVDLEG---KAFVRMMDVPD-CYHIFPTANDTFFMH-C----RD 166 (352)
T ss_pred hhhccCccceEEECCCC-CEEEEec---CCCCCEEEEEECCC---CcEEEEEeCCC-CcEEEEecCCccEEE-e----ec
Confidence 23478999994 4444331 12246899999988 66666554321 111112222222111 1 11
Q ss_pred ccCceeecceeEEEEeeCCcc-eeeeec-CC-CCCeE-EEEECc-CCCEEEEEEccCCCeEEEEecccce------eEEe
Q 013871 166 KTNQSYYGESKLNYLTTDGTH-EGLVPL-RK-EGPVH-DVQWSY-SGSEFAVVYGFMPASATIFNKKCRP------ILEL 234 (434)
Q Consensus 166 ~~~~~~~g~~~l~~l~~~~~~-~~~v~l-~~-~~~i~-~v~wsp-dg~~~av~~g~~~~~v~l~d~~~~~------~~~~ 234 (434)
|......++..|.. ....++ .. +.++. .-.+++ +|+++.+. +. ++|.+.|+.+.. +..+
T Consensus 167 -------g~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs--~e-G~V~~id~~~~~~~~~~~~~~~ 236 (352)
T TIGR02658 167 -------GSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPT--YT-GKIFQIDLSSGDAKFLPAIEAF 236 (352)
T ss_pred -------CceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEe--cC-CeEEEEecCCCcceecceeeec
Confidence 11001111111110 000001 00 01110 013455 88777763 33 899999964321 1111
Q ss_pred ---------CCcCeeEEEECCCCCeEEEEecCC-------CCCeEEEEEccCCEEEEEee-CCCceEEEECCCCC-EEEE
Q 013871 235 ---------GSGPYNTVRWNPKGKFLCLAGFGN-------LPGDMAFWDYVDGKQLGTTR-AECSVTSEWSPDGR-YFMT 296 (434)
Q Consensus 235 ---------~~~~~~~i~~SP~g~~l~~~~~~~-------~~g~i~iwd~~~~~~i~~~~-~~~~~~~~wspdg~-~l~t 296 (434)
..+...-++++|+|+.+.++..+. ..+.|.++|..+++.+..+. +..+..+++||||+ +|++
T Consensus 237 ~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyv 316 (352)
T TIGR02658 237 TEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYA 316 (352)
T ss_pred cccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEE
Confidence 122233499999999888754221 12489999999999998876 45777899999999 7666
Q ss_pred EEcCCceeeCCcEEEEeec-Cceeeee
Q 013871 297 ATTAPRLQIDNGIKIFHHN-GSLFFKK 322 (434)
Q Consensus 297 as~~prl~~D~~i~iw~~~-g~~~~~~ 322 (434)
+... ++.|.|.|.. ++.+...
T Consensus 317 tn~~-----s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 317 LSTG-----DKTLYIFDAETGKELSSV 338 (352)
T ss_pred eCCC-----CCcEEEEECcCCeEEeee
Confidence 6532 7889999984 4455544
No 213
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.32 E-value=1.6e-09 Score=97.14 Aligned_cols=236 Identities=16% Similarity=0.206 Sum_probs=149.4
Q ss_pred eeeecCCCcEEEEecCCeEEEEeCCCCCCceeeeeecCCe--eEEEEeCCCCCeEEEEecC--CCCCCceEEEEEcCCCC
Q 013871 54 SIRFSSDEAVACRMATNEIQFFDTTDFPKGILYRLRVPGV--AAFEVSKAPGSHVAVFVPE--SKGSPASVQIYACGKDL 129 (434)
Q Consensus 54 ~~~~S~d~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~v--~~~~~sp~~~~~ia~~~~~--~~~~~~~v~i~~~~~~~ 129 (434)
.++|+.|..-++.+.+.-.+||+.+-+...........++ ..+-+= .+++|..-.. ..-.+..|.|||--.
T Consensus 10 svs~NQD~ScFava~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR---~N~laLVGGg~~pky~pNkviIWDD~k-- 84 (346)
T KOG2111|consen 10 SVSFNQDHSCFAVATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLFR---SNYLALVGGGSRPKYPPNKVIIWDDLK-- 84 (346)
T ss_pred EEEEccCCceEEEEecCceEEEecCchhhhhhhccccCchhhhhHhhh---hceEEEecCCCCCCCCCceEEEEeccc--
Confidence 6899999999999999999999987654322223333331 111111 2334433211 123567999999443
Q ss_pred CCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCC-CCCeEEEEECcC-C
Q 013871 130 QSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK-EGPVHDVQWSYS-G 207 (434)
Q Consensus 130 ~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~-~~~i~~v~wspd-g 207 (434)
..++...+|. .++..+...++ .|+++. .. .||.+.-...-.....++. ..|=--++..|. +
T Consensus 85 -~~~i~el~f~-~~I~~V~l~r~--riVvvl----~~---------~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~ 147 (346)
T KOG2111|consen 85 -ERCIIELSFN-SEIKAVKLRRD--RIVVVL----EN---------KIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSN 147 (346)
T ss_pred -CcEEEEEEec-cceeeEEEcCC--eEEEEe----cC---------eEEEEEcCCChhheeeeecccCCCceEeecCCCC
Confidence 6677766654 46667777654 554442 11 2232221111111111110 111113444453 3
Q ss_pred CEEEEEEccCCCeEEEEecccc-----eeEEeCCcCeeEEEECCCCCeEEEEecCCCCC-eEEEEEccCCEEEEEeeCC-
Q 013871 208 SEFAVVYGFMPASATIFNKKCR-----PILELGSGPYNTVRWNPKGKFLCLAGFGNLPG-DMAFWDYVDGKQLGTTRAE- 280 (434)
Q Consensus 208 ~~~av~~g~~~~~v~l~d~~~~-----~~~~~~~~~~~~i~~SP~g~~l~~~~~~~~~g-~i~iwd~~~~~~i~~~~~~- 280 (434)
+.+.+.-|...|.|.|-|+... .+...|...+.|++.+-+|..+|+++ ..| -|+|||..+|+.+..+.-.
T Consensus 148 k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaS---tkGTLIRIFdt~~g~~l~E~RRG~ 224 (346)
T KOG2111|consen 148 KSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATAS---TKGTLIRIFDTEDGTLLQELRRGV 224 (346)
T ss_pred ceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEec---cCcEEEEEEEcCCCcEeeeeecCC
Confidence 3444445777889999998532 23345999999999999999999998 444 5899999999988877543
Q ss_pred ---CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceee
Q 013871 281 ---CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFF 320 (434)
Q Consensus 281 ---~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~~~ 320 (434)
.+.+++||||+.+|++++. -++++||.+.+....
T Consensus 225 d~A~iy~iaFSp~~s~LavsSd------KgTlHiF~l~~~~~~ 261 (346)
T KOG2111|consen 225 DRADIYCIAFSPNSSWLAVSSD------KGTLHIFSLRDTENT 261 (346)
T ss_pred chheEEEEEeCCCccEEEEEcC------CCeEEEEEeecCCCC
Confidence 5566999999999999998 999999999775443
No 214
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.32 E-value=8.1e-10 Score=98.64 Aligned_cols=256 Identities=11% Similarity=0.068 Sum_probs=164.6
Q ss_pred CCCCCeeeecCCCc-EEEEecCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCC
Q 013871 49 KTTWPSIRFSSDEA-VACRMATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGK 127 (434)
Q Consensus 49 ~~~~~~~~~S~d~~-~la~~~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~ 127 (434)
++.+..+.|+|.++ +|+++-|+++++|++...+.... --+...+.+++|.+. ..+. .++.++.|+.+|+..
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~-~~~~~plL~c~F~d~--~~~~-----~G~~dg~vr~~Dln~ 84 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLK-FKHGAPLLDCAFADE--STIV-----TGGLDGQVRRYDLNT 84 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhh-eecCCceeeeeccCC--ceEE-----EeccCceEEEEEecC
Confidence 36777899998765 55555799999999988653222 222334777777764 2222 357889999999976
Q ss_pred CCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCC
Q 013871 128 DLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSG 207 (434)
Q Consensus 128 ~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg 207 (434)
....+..-|...+.++..++.-..+ .++..|++.+.|.+.+. .....++....|+++..+ |
T Consensus 85 ----~~~~~igth~~~i~ci~~~~~~~~v---IsgsWD~~ik~wD~R~~----------~~~~~~d~~kkVy~~~v~--g 145 (323)
T KOG1036|consen 85 ----GNEDQIGTHDEGIRCIEYSYEVGCV---ISGSWDKTIKFWDPRNK----------VVVGTFDQGKKVYCMDVS--G 145 (323)
T ss_pred ----CcceeeccCCCceEEEEeeccCCeE---EEcccCccEEEEecccc----------ccccccccCceEEEEecc--C
Confidence 3334455567777788877644432 22336777766654321 122223335577777765 6
Q ss_pred CEEEEEEccCCCeEEEEeccccee-EEe----CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC----EEEEEee
Q 013871 208 SEFAVVYGFMPASATIFNKKCRPI-LEL----GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG----KQLGTTR 278 (434)
Q Consensus 208 ~~~av~~g~~~~~v~l~d~~~~~~-~~~----~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~----~~i~~~~ 278 (434)
+.|+| |..+.++.+||++.... ++. -+-.+.+++.-|++.-.++++ .+|.|.+=..+.. +.-..|+
T Consensus 146 ~~LvV--g~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sS---ieGRVavE~~d~s~~~~skkyaFk 220 (323)
T KOG1036|consen 146 NRLVV--GTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSS---IEGRVAVEYFDDSEEAQSKKYAFK 220 (323)
T ss_pred CEEEE--eecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEe---ecceEEEEccCCchHHhhhceeEE
Confidence 67775 66788999999974322 211 245678999999888777777 6677776444432 2222333
Q ss_pred CC-----------CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc-eeeeeec--ccceeeEEEcCCCCCCCC
Q 013871 279 AE-----------CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS-LFFKKMF--DKLFQAEWKPVSPDKFGD 342 (434)
Q Consensus 279 ~~-----------~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~-~~~~~~~--~~~~~~~w~p~~~~~~~~ 342 (434)
.| .+..++|+|--..|+||+. ||-|-+||...+ .+.+.+. ..+-.++++-++..|.-+
T Consensus 221 CHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGs------DG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia 292 (323)
T KOG1036|consen 221 CHRLSEKDTEIIYPVNAIAFHPIHGTFATGGS------DGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIA 292 (323)
T ss_pred eeecccCCceEEEEeceeEeccccceEEecCC------CceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEE
Confidence 32 3445999999999999999 999999998654 3333322 347777787776554443
No 215
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.31 E-value=5.1e-10 Score=100.66 Aligned_cols=238 Identities=14% Similarity=0.167 Sum_probs=157.8
Q ss_pred CCCCeeeecC-----CCcEEEEecCCeEEEEeCCCCCCceeee-----eecCCeeEEEEeCCC---CCeEEEEecCCCCC
Q 013871 50 TTWPSIRFSS-----DEAVACRMATNEIQFFDTTDFPKGILYR-----LRVPGVAAFEVSKAP---GSHVAVFVPESKGS 116 (434)
Q Consensus 50 ~~~~~~~~S~-----d~~~la~~~~~~i~v~~~~~~~~~~~~~-----~~~~~v~~~~~sp~~---~~~ia~~~~~~~~~ 116 (434)
..+..++|.+ +.+.+|+.+.+.+.+|+.+........+ -+.+....++|+=+. ++++++ +|.
T Consensus 39 ~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~-----~G~ 113 (385)
T KOG1034|consen 39 KPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAA-----GGY 113 (385)
T ss_pred CccceeeeehhcCCCCCceEEEeCCcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEe-----ecc
Confidence 4455677763 3467888888999999986533111111 123345566776542 345543 467
Q ss_pred CceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCC
Q 013871 117 PASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEG 196 (434)
Q Consensus 117 ~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~ 196 (434)
.|.|+|.++.. ++.....-.|...+..+++.|+...|++.++ .|.+.+.|.-.+.... -+.|+.+ .+.+
T Consensus 114 ~GvIrVid~~~---~~~~~~~~ghG~sINeik~~p~~~qlvls~S--kD~svRlwnI~~~~Cv-~VfGG~e-----gHrd 182 (385)
T KOG1034|consen 114 LGVIRVIDVVS---GQCSKNYRGHGGSINEIKFHPDRPQLVLSAS--KDHSVRLWNIQTDVCV-AVFGGVE-----GHRD 182 (385)
T ss_pred eeEEEEEecch---hhhccceeccCccchhhhcCCCCCcEEEEec--CCceEEEEeccCCeEE-EEecccc-----cccC
Confidence 78999999987 7788888889999999999999888776654 5667775543333222 1223221 2468
Q ss_pred CeEEEEECcCCCEEEEEEccCCCeEEEEecccce----------------------------eE---EeCCcCee-----
Q 013871 197 PVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP----------------------------IL---ELGSGPYN----- 240 (434)
Q Consensus 197 ~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~----------------------------~~---~~~~~~~~----- 240 (434)
.|.++.|+++|.+|+ ++.||.++.+|++.... .+ ++|...|.
T Consensus 183 eVLSvD~~~~gd~i~--ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~ 260 (385)
T KOG1034|consen 183 EVLSVDFSLDGDRIA--SCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF 260 (385)
T ss_pred cEEEEEEcCCCCeee--ccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH
Confidence 999999999999888 79999999999865110 00 00111110
Q ss_pred ---------------------------------------------------EEEECCCCCeEEEEecCCCCCeEEEEEcc
Q 013871 241 ---------------------------------------------------TVRWNPKGKFLCLAGFGNLPGDMAFWDYV 269 (434)
Q Consensus 241 ---------------------------------------------------~i~~SP~g~~l~~~~~~~~~g~i~iwd~~ 269 (434)
-.+|.|-+++||+|+ ..|+|++||++
T Consensus 261 gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gn---q~g~v~vwdL~ 337 (385)
T KOG1034|consen 261 GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGN---QSGKVYVWDLD 337 (385)
T ss_pred hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhcc---CCCcEEEEECC
Confidence 134555666777665 66899999998
Q ss_pred CCEE--EEEeeC----CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEee
Q 013871 270 DGKQ--LGTTRA----ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH 314 (434)
Q Consensus 270 ~~~~--i~~~~~----~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~ 314 (434)
..+. ..++.+ ..+-..+||-||..|+..+. |+.|.-||.
T Consensus 338 ~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcd------d~~Vwrwdr 382 (385)
T KOG1034|consen 338 NNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCD------DGTVWRWDR 382 (385)
T ss_pred CCCCccCceEEeccccceeeeeeecccCcEEEEEeC------CCcEEEEEe
Confidence 7643 222222 23445999999999999998 999999985
No 216
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.31 E-value=3.2e-08 Score=95.47 Aligned_cols=262 Identities=15% Similarity=0.157 Sum_probs=150.9
Q ss_pred ceEEecCCCcEEEEEecCCCCCCCcEEEEEcCC--CcE--EEEEeecCcCCCCCCeeeecCCCcEEEEe--cCCeEEEEe
Q 013871 3 LLLTCLRVGLIIQTFQKSSTPQEKNVILWKTET--GEA--VYQLFQKNMTKTTWPSIRFSSDEAVACRM--ATNEIQFFD 76 (434)
Q Consensus 3 ~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~--g~~--~~~~~~~~~~~~~~~~~~~S~d~~~la~~--~~~~i~v~~ 76 (434)
..|++||++++|.+..... ..++.|..|++.. |+. +.+...... ... .++.++|+++|+.+ .++.|.+|+
T Consensus 40 s~l~~~~~~~~LY~~~e~~-~~~g~v~~~~i~~~~g~L~~~~~~~~~g~--~p~-~i~~~~~g~~l~vany~~g~v~v~~ 115 (345)
T PF10282_consen 40 SWLAVSPDGRRLYVVNEGS-GDSGGVSSYRIDPDTGTLTLLNSVPSGGS--SPC-HIAVDPDGRFLYVANYGGGSVSVFP 115 (345)
T ss_dssp CCEEE-TTSSEEEEEETTS-STTTEEEEEEEETTTTEEEEEEEEEESSS--CEE-EEEECTTSSEEEEEETTTTEEEEEE
T ss_pred ceEEEEeCCCEEEEEEccc-cCCCCEEEEEECCCcceeEEeeeeccCCC--CcE-EEEEecCCCEEEEEEccCCeEEEEE
Confidence 4588999999999887322 2357888888765 433 333332211 223 68899999999887 468999999
Q ss_pred CCCCCCceee--ee------------ecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceee---ee-
Q 013871 77 TTDFPKGILY--RL------------RVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLAR---RS- 138 (434)
Q Consensus 77 ~~~~~~~~~~--~~------------~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~---~~- 138 (434)
+......... .. .......+.++|++ ..+.+ ++. + ...|.+|++... ...+.. ..
T Consensus 116 l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg-~~v~v--~dl-G-~D~v~~~~~~~~--~~~l~~~~~~~~ 188 (345)
T PF10282_consen 116 LDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDG-RFVYV--PDL-G-ADRVYVYDIDDD--TGKLTPVDSIKV 188 (345)
T ss_dssp ECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTS-SEEEE--EET-T-TTEEEEEEE-TT--S-TEEEEEEEEC
T ss_pred ccCCcccceeeeecccCCCCCcccccccccceeEEECCCC-CEEEE--Eec-C-CCEEEEEEEeCC--CceEEEeecccc
Confidence 9764321111 11 11346678999984 44422 222 1 257899998763 112222 11
Q ss_pred ecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEee-CCcce--eeee-cC--C--CCCeEEEEECcCCCEE
Q 013871 139 FFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTT-DGTHE--GLVP-LR--K--EGPVHDVQWSYSGSEF 210 (434)
Q Consensus 139 ~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~-~~~~~--~~v~-l~--~--~~~i~~v~wspdg~~~ 210 (434)
.....-..+.|+|+|+++.+... .+.+.. ++.++. .+... ..+. +. . .....+++++|||+++
T Consensus 189 ~~G~GPRh~~f~pdg~~~Yv~~e--~s~~v~-------v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~l 259 (345)
T PF10282_consen 189 PPGSGPRHLAFSPDGKYAYVVNE--LSNTVS-------VFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFL 259 (345)
T ss_dssp STTSSEEEEEE-TTSSEEEEEET--TTTEEE-------EEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEE
T ss_pred ccCCCCcEEEEcCCcCEEEEecC--CCCcEE-------EEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEE
Confidence 12344568999999999876532 221111 222221 11111 1111 11 1 2257899999999988
Q ss_pred EEEEccCCCeEEEEeccc--cee---EEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEc--cCCEEEE---Eee
Q 013871 211 AVVYGFMPASATIFNKKC--RPI---LEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDY--VDGKQLG---TTR 278 (434)
Q Consensus 211 av~~g~~~~~v~l~d~~~--~~~---~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~--~~~~~i~---~~~ 278 (434)
.+. ......|.+|++.. ..+ ..+ ....-..+.++|+|++|+++..+. +.|.+|++ ++|++.. ...
T Consensus 260 yvs-nr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s--~~v~vf~~d~~tG~l~~~~~~~~ 336 (345)
T PF10282_consen 260 YVS-NRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDS--NTVSVFDIDPDTGKLTPVGSSVP 336 (345)
T ss_dssp EEE-ECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTT--TEEEEEEEETTTTEEEEEEEEEE
T ss_pred EEE-eccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCC--CeEEEEEEeCCCCcEEEeccccc
Confidence 874 44567999999832 222 222 233346799999999999988654 68999876 4665433 245
Q ss_pred CCCceEEEE
Q 013871 279 AECSVTSEW 287 (434)
Q Consensus 279 ~~~~~~~~w 287 (434)
.+.++++.|
T Consensus 337 ~~~p~ci~f 345 (345)
T PF10282_consen 337 IPSPVCIVF 345 (345)
T ss_dssp SSSEEEEEE
T ss_pred CCCCEEEeC
Confidence 556777665
No 217
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.30 E-value=2e-10 Score=100.32 Aligned_cols=272 Identities=15% Similarity=0.171 Sum_probs=164.5
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCC
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFP 81 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~ 81 (434)
|+++.|-.+++ |.+.. .-+.|++|++.+...+..+.... ...+..++--|+++++.-+-|..+.+|++....
T Consensus 17 v~s~~fqa~~r-L~sg~-----~~G~V~~w~lqt~r~~~~~r~~g--~~~it~lq~~p~d~l~tqgRd~~L~lw~ia~s~ 88 (323)
T KOG0322|consen 17 VTSVLFQANER-LMSGL-----SVGIVKMWVLQTERDLPLIRLFG--RLFITNLQSIPNDSLDTQGRDPLLILWTIAYSA 88 (323)
T ss_pred heehhhccchh-hhccc-----ccceEEEEEeecCccchhhhhhc--cceeeceeecCCcchhhcCCCceEEEEEccCcc
Confidence 45566666555 44433 66899999998887766655321 244556777788777766678899999987633
Q ss_pred CceeeeeecC--CeeEEEEeCCCCCe--EEEEecCC---------CCCCceEEEEEcCCCCCCCceeeeeecccceeEEE
Q 013871 82 KGILYRLRVP--GVAAFEVSKAPGSH--VAVFVPES---------KGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLN 148 (434)
Q Consensus 82 ~~~~~~~~~~--~v~~~~~sp~~~~~--ia~~~~~~---------~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ 148 (434)
-.....+... +.-.+++++++.+. +..+ |.. .+.+-.+++-+-+... -.....+..
T Consensus 89 ~i~i~Si~~nslgFCrfSl~~~~k~~eqll~y-p~rgsde~h~~D~g~~tqv~i~dd~~~~----------Klgsvmc~~ 157 (323)
T KOG0322|consen 89 FISIHSIVVNSLGFCRFSLVKKPKNSEQLLEY-PSRGSDETHKQDGGDTTQVQIADDSERS----------KLGSVMCQD 157 (323)
T ss_pred eEEEeeeeccccccccceeccCCCcchhheec-CCcccchhhhhccCccceeEccCchhcc----------ccCceeeee
Confidence 2222222222 22334555554332 2222 221 1122233332222110 011223334
Q ss_pred EC-CCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeec-----------CCCCCeEEEEECcCCCEEEEEEcc
Q 013871 149 WN-RGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL-----------RKEGPVHDVQWSYSGSEFAVVYGF 216 (434)
Q Consensus 149 ws-~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l-----------~~~~~i~~v~wspdg~~~av~~g~ 216 (434)
|. .++++++.++.-+. |...+|.++.. +..+.+ .++++|.++.+.+.-..=+ .|.
T Consensus 158 ~~~~c~s~~lllaGyEs--------ghvv~wd~S~~---~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGi--sgg 224 (323)
T KOG0322|consen 158 KDHACGSTFLLLAGYES--------GHVVIWDLSTG---DKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGI--SGG 224 (323)
T ss_pred ccccccceEEEEEeccC--------CeEEEEEccCC---ceeeccccccccccchhhccCcceeeeechhhcCCc--CCC
Confidence 33 35666666553321 33344544321 222221 2478999999886433333 355
Q ss_pred CCCeEEEEecccc-------eeEEeCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEE
Q 013871 217 MPASATIFNKKCR-------PILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEW 287 (434)
Q Consensus 217 ~~~~v~l~d~~~~-------~~~~~~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~w 287 (434)
-+.++..|++... ....+.+-.++.+..-||++.+|++| -||.|+||..+++..+..+.-| .+..++|
T Consensus 225 a~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAG---WD~RiRVyswrtl~pLAVLkyHsagvn~vAf 301 (323)
T KOG0322|consen 225 ADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAG---WDHRIRVYSWRTLNPLAVLKYHSAGVNAVAF 301 (323)
T ss_pred ccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecc---cCCcEEEEEeccCCchhhhhhhhcceeEEEe
Confidence 5558888876421 12334566788899999999999999 5569999999999888777666 6667999
Q ss_pred CCCCCEEEEEEcCCceeeCCcEEEEee
Q 013871 288 SPDGRYFMTATTAPRLQIDNGIKIFHH 314 (434)
Q Consensus 288 spdg~~l~tas~~prl~~D~~i~iw~~ 314 (434)
+||...++.|+. |..|-+|++
T Consensus 302 spd~~lmAaask------D~rISLWkL 322 (323)
T KOG0322|consen 302 SPDCELMAAASK------DARISLWKL 322 (323)
T ss_pred CCCCchhhhccC------CceEEeeec
Confidence 999999999999 999999985
No 218
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.30 E-value=1.9e-09 Score=107.68 Aligned_cols=261 Identities=13% Similarity=0.196 Sum_probs=156.4
Q ss_pred CcEEEEEcCCC-cEEEEEeecCcCCCCCCeeeecC-CCcEEEEe-cCCeEEEEeCCCCCCceee------eeecCCeeEE
Q 013871 26 KNVILWKTETG-EAVYQLFQKNMTKTTWPSIRFSS-DEAVACRM-ATNEIQFFDTTDFPKGILY------RLRVPGVAAF 96 (434)
Q Consensus 26 ~~v~iWd~~~g-~~~~~~~~~~~~~~~~~~~~~S~-d~~~la~~-~~~~i~v~~~~~~~~~~~~------~~~~~~v~~~ 96 (434)
..+.||++.+- ..-..+... ..++++.|+| +..+||.| .+|+|.+||+......... .-|.+.+..+
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~~~----s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~v 297 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLESP----SEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAV 297 (555)
T ss_pred ceEEEEecCCCCCceEEEecC----CceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEE
Confidence 47999999766 333333332 6677999999 45666666 4689999999764431111 1223456666
Q ss_pred EEeCCCCC--eEEEEecCCCCCCceEEEEEcCCCCCCCceeeee---------ecccceeEEEECCCCCeEEEEEEeccc
Q 013871 97 EVSKAPGS--HVAVFVPESKGSPASVQIYACGKDLQSQPLARRS---------FFRCSTVQLNWNRGSTGLLAVAQSDVD 165 (434)
Q Consensus 97 ~~sp~~~~--~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~---------~~~~~~~~~~ws~~G~~l~~~~~~~~d 165 (434)
.|-.+..+ .+.+ ..+|.|..|++............. --......+.|.+......++. ++
T Consensus 298 vW~~~~~~~~f~s~------ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVG-Te-- 368 (555)
T KOG1587|consen 298 VWLQNEHNTEFFSL------SSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVG-TE-- 368 (555)
T ss_pred EEeccCCCCceEEE------ecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEE-cC--
Confidence 66554333 2222 347889999877643211111111 1112345666666544433321 11
Q ss_pred ccCceeecceeEEEEeeCCcce--------eeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc--cceeEEe-
Q 013871 166 KTNQSYYGESKLNYLTTDGTHE--------GLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK--CRPILEL- 234 (434)
Q Consensus 166 ~~~~~~~g~~~l~~l~~~~~~~--------~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~--~~~~~~~- 234 (434)
.|..+.| .-.+... ......+.++|+.+.++|=+..+....| |-.++||... ..++..+
T Consensus 369 -~G~v~~~-------~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g--DW~vriWs~~~~~~Pl~~~~ 438 (555)
T KOG1587|consen 369 -EGKVYKG-------CRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG--DWTVRIWSEDVIASPLLSLD 438 (555)
T ss_pred -CcEEEEE-------eccCCcccccccccccccccccCcceEeeecCCCccceeeeec--cceeEeccccCCCCcchhhh
Confidence 1222211 1111111 1112235799999999998877776555 6799999765 5566655
Q ss_pred -CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC--EEEEEee--CCCceEEEECCCCCEEEEEEcCCceeeCCcE
Q 013871 235 -GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG--KQLGTTR--AECSVTSEWSPDGRYFMTATTAPRLQIDNGI 309 (434)
Q Consensus 235 -~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~--~~i~~~~--~~~~~~~~wspdg~~l~tas~~prl~~D~~i 309 (434)
+...+.+++|||----+...+. .+|+|.|||+... +.+.+.. ......+.|+++|+.|++|.. .|.+
T Consensus 439 ~~~~~v~~vaWSptrpavF~~~d--~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~------~G~~ 510 (555)
T KOG1587|consen 439 SSPDYVTDVAWSPTRPAVFATVD--GDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDA------NGTT 510 (555)
T ss_pred hccceeeeeEEcCcCceEEEEEc--CCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecC------CCcE
Confidence 4566899999997764444442 5699999998743 3333322 223344899999999999998 8999
Q ss_pred EEEeecCc
Q 013871 310 KIFHHNGS 317 (434)
Q Consensus 310 ~iw~~~g~ 317 (434)
++|++...
T Consensus 511 ~~~~l~~~ 518 (555)
T KOG1587|consen 511 HILKLSES 518 (555)
T ss_pred EEEEcCch
Confidence 99997544
No 219
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.29 E-value=1.4e-09 Score=94.05 Aligned_cols=262 Identities=8% Similarity=0.075 Sum_probs=162.8
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCC---------c-EEEEEeecCcCCCCCCeeeecCCCcEEEEecCCe
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETG---------E-AVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNE 71 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g---------~-~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~ 71 (434)
|.+-++||.++||+... .++.|.+..+.+. + .+-.+.. |...+..+.|. +.+|.+++++.
T Consensus 13 vf~qa~sp~~~~l~agn-----~~G~iav~sl~sl~s~sa~~~gk~~iv~eqa---hdgpiy~~~f~--d~~Lls~gdG~ 82 (325)
T KOG0649|consen 13 VFAQAISPSKQYLFAGN-----LFGDIAVLSLKSLDSGSAEPPGKLKIVPEQA---HDGPIYYLAFH--DDFLLSGGDGL 82 (325)
T ss_pred HHHHhhCCcceEEEEec-----CCCeEEEEEehhhhccccCCCCCcceeeccc---cCCCeeeeeee--hhheeeccCce
Confidence 34557899999999988 7899999987432 1 1222222 23455577776 56777888899
Q ss_pred EEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECC
Q 013871 72 IQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNR 151 (434)
Q Consensus 72 i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~ 151 (434)
|+=|.-..+... .+. -++|.+.. +...-...--++..|...|
T Consensus 83 V~gw~W~E~~es----~~~-----------------------------K~lwe~~~-----P~~~~~~evPeINam~ldP 124 (325)
T KOG0649|consen 83 VYGWEWNEEEES----LAT-----------------------------KRLWEVKI-----PMQVDAVEVPEINAMWLDP 124 (325)
T ss_pred EEEeeehhhhhh----ccc-----------------------------hhhhhhcC-----ccccCcccCCccceeEecc
Confidence 999987664421 000 01121110 0000000001233444555
Q ss_pred CCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccccee
Q 013871 152 GSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPI 231 (434)
Q Consensus 152 ~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~ 231 (434)
..+.|++.. |+..+|.+++..+...+.--.+...||++.--....++. +|.+|+++++||.++..-
T Consensus 125 ~enSi~~Ag------------GD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qil--sG~EDGtvRvWd~kt~k~ 190 (325)
T KOG0649|consen 125 SENSILFAG------------GDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQIL--SGAEDGTVRVWDTKTQKH 190 (325)
T ss_pred CCCcEEEec------------CCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCccee--ecCCCccEEEEeccccce
Confidence 555555432 334577777776655555555688999998844444555 699999999999985443
Q ss_pred -EEeC-CcCeeE---------EEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCce-EEEECCCCCEEEEEEc
Q 013871 232 -LELG-SGPYNT---------VRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSV-TSEWSPDGRYFMTATT 299 (434)
Q Consensus 232 -~~~~-~~~~~~---------i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~-~~~wspdg~~l~tas~ 299 (434)
..++ ...-++ .+..-+..+|++|+.- .+.+|++.+.+....+.-+... .+.|--| .++.++.
T Consensus 191 v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp----~lslwhLrsse~t~vfpipa~v~~v~F~~d--~vl~~G~ 264 (325)
T KOG0649|consen 191 VSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGP----KLSLWHLRSSESTCVFPIPARVHLVDFVDD--CVLIGGE 264 (325)
T ss_pred eEEeccccChhhcCcccCceeEEEeccCceEEecCCC----ceeEEeccCCCceEEEecccceeEeeeecc--eEEEecc
Confidence 3221 011111 2233355688777633 6999999999888887766433 3777654 6777787
Q ss_pred CCceeeCCcEEEEeecCceeeeeecc--cceeeEEEcCCC
Q 013871 300 APRLQIDNGIKIFHHNGSLFFKKMFD--KLFQAEWKPVSP 337 (434)
Q Consensus 300 ~prl~~D~~i~iw~~~g~~~~~~~~~--~~~~~~w~p~~~ 337 (434)
.|.+.-|.++|.+-...+.+ -++...|+-.|-
T Consensus 265 ------g~~v~~~~l~Gvl~a~ip~~s~~c~s~s~~~~p~ 298 (325)
T KOG0649|consen 265 ------GNHVQSYTLNGVLQANIPVESTACYSASWQTSPI 298 (325)
T ss_pred ------ccceeeeeeccEEEEeccCCccceeeecccCCce
Confidence 89999999999987776654 577888887763
No 220
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.28 E-value=3.3e-10 Score=100.17 Aligned_cols=246 Identities=16% Similarity=0.184 Sum_probs=144.4
Q ss_pred cceEEecCCC-cEEEEEecCCCCC--CCcEEEEEcCCC---------cEEEEEeecCcCCCCCCeeeecCCCcEEEEecC
Q 013871 2 LLLLTCLRVG-LIIQTFQKSSTPQ--EKNVILWKTETG---------EAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT 69 (434)
Q Consensus 2 V~~l~fSP~g-~~L~t~~~~~~~~--d~~v~iWd~~~g---------~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~ 69 (434)
|+.|+=||.. +.|+|+-...+.. -....||.+... +++..+.... ...+.|+.|-|++..|+++.+
T Consensus 66 vw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldtea--vg~i~cvew~Pns~klasm~d 143 (370)
T KOG1007|consen 66 VWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEA--VGKINCVEWEPNSDKLASMDD 143 (370)
T ss_pred eehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHH--hCceeeEEEcCCCCeeEEecc
Confidence 5677778854 4555554222111 134679987432 2233333222 145679999999999999999
Q ss_pred CeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEE
Q 013871 70 NEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNW 149 (434)
Q Consensus 70 ~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~w 149 (434)
+.|.+|++.+.... ...+ .++. +.+ +......-+|
T Consensus 144 n~i~l~~l~ess~~-vaev---------~ss~-----------s~e------------------------~~~~ftsg~W 178 (370)
T KOG1007|consen 144 NNIVLWSLDESSKI-VAEV---------LSSE-----------SAE------------------------MRHSFTSGAW 178 (370)
T ss_pred CceEEEEcccCcch-heee---------cccc-----------ccc------------------------ccceeccccc
Confidence 99999999774321 1111 0111 000 0111124467
Q ss_pred CC--CCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecC--CCCCeEEEEECcCCCEEEEEEccCCCeEEEEe
Q 013871 150 NR--GSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR--KEGPVHDVQWSYSGSEFAVVYGFMPASATIFN 225 (434)
Q Consensus 150 s~--~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~--~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d 225 (434)
|| +|+.++.. .|.+ |..+++... .+...+. +...|.++.|.|+-.++.+ +++.|+.|+|||
T Consensus 179 spHHdgnqv~tt----~d~t---------l~~~D~RT~-~~~~sI~dAHgq~vrdlDfNpnkq~~lv-t~gDdgyvriWD 243 (370)
T KOG1007|consen 179 SPHHDGNQVATT----SDST---------LQFWDLRTM-KKNNSIEDAHGQRVRDLDFNPNKQHILV-TCGDDGYVRIWD 243 (370)
T ss_pred CCCCccceEEEe----CCCc---------EEEEEccch-hhhcchhhhhcceeeeccCCCCceEEEE-EcCCCccEEEEe
Confidence 77 67765543 2223 334433322 1222221 2456889999998766665 677899999999
Q ss_pred cc--cceeEEe--CCcCeeEEEECCCCC-eEEEEecCCCCCeEEEEEccCC-----------------------------
Q 013871 226 KK--CRPILEL--GSGPYNTVRWNPKGK-FLCLAGFGNLPGDMAFWDYVDG----------------------------- 271 (434)
Q Consensus 226 ~~--~~~~~~~--~~~~~~~i~~SP~g~-~l~~~~~~~~~g~i~iwd~~~~----------------------------- 271 (434)
.+ ..+++++ |..-+-++.|+|.-. +|+++|.| ..|.+|...+-
T Consensus 244 ~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SD---s~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~d 320 (370)
T KOG1007|consen 244 TRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSD---SAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQD 320 (370)
T ss_pred ccCCCccccccCCCceEEEEEEecCccceEEEecCCC---ceeEEEeccccccccccccccccccCcchhhHHhcccccc
Confidence 97 4667777 567788999999654 66666644 47888764320
Q ss_pred EEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc
Q 013871 272 KQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS 317 (434)
Q Consensus 272 ~~i~~~~~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~ 317 (434)
-.+.++..| .+..++||.-...+...-++ ||.+.|=.+.-.
T Consensus 321 g~l~tydehEDSVY~~aWSsadPWiFASLSY-----DGRviIs~V~r~ 363 (370)
T KOG1007|consen 321 GQLETYDEHEDSVYALAWSSADPWIFASLSY-----DGRVIISSVPRF 363 (370)
T ss_pred cccccccccccceEEEeeccCCCeeEEEecc-----CceEEeecCChh
Confidence 022344444 44559999877765544433 777766555433
No 221
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.28 E-value=6.5e-11 Score=108.70 Aligned_cols=117 Identities=22% Similarity=0.427 Sum_probs=94.2
Q ss_pred CCCCeEEEEECcCCC-EEEEEEccCCCeEEEEecc--------cceeEEe--CCcCeeEEEECCCCC-eEEEEecCCCCC
Q 013871 194 KEGPVHDVQWSYSGS-EFAVVYGFMPASATIFNKK--------CRPILEL--GSGPYNTVRWNPKGK-FLCLAGFGNLPG 261 (434)
Q Consensus 194 ~~~~i~~v~wspdg~-~~av~~g~~~~~v~l~d~~--------~~~~~~~--~~~~~~~i~~SP~g~-~l~~~~~~~~~g 261 (434)
+.++|.+++|+|-.. .+| +|+.|.+|.||.+- .+++..+ |...+..++|+|... .|+++|.||
T Consensus 80 Ht~~vLDi~w~PfnD~vIA--SgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn--- 154 (472)
T KOG0303|consen 80 HTAPVLDIDWCPFNDCVIA--SGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN--- 154 (472)
T ss_pred ccccccccccCccCCceee--cCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCc---
Confidence 589999999999544 444 79999999999762 3344444 788899999999875 677788666
Q ss_pred eEEEEEccCCEEEEEeeCCCce-EEEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceeee
Q 013871 262 DMAFWDYVDGKQLGTTRAECSV-TSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFK 321 (434)
Q Consensus 262 ~i~iwd~~~~~~i~~~~~~~~~-~~~wspdg~~l~tas~~prl~~D~~i~iw~~-~g~~~~~ 321 (434)
+|.+||+.+++.+-++.+++.+ .+.|+-||.+|+|++. |..|||||. .|+++.+
T Consensus 155 ~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~Ttck------DKkvRv~dpr~~~~v~e 210 (472)
T KOG0303|consen 155 TVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCK------DKKVRVIDPRRGTVVSE 210 (472)
T ss_pred eEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecc------cceeEEEcCCCCcEeee
Confidence 9999999999888888866544 4999999999999999 999999997 4444443
No 222
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.26 E-value=8.1e-08 Score=91.21 Aligned_cols=245 Identities=9% Similarity=0.074 Sum_probs=138.1
Q ss_pred ecCCCcEEEEEecCC-----CCCCCcEEEEEcCCCcEEEEEeecCc-----CCCCCCeeeecCCCcEEEEe--c-CCeEE
Q 013871 7 CLRVGLIIQTFQKSS-----TPQEKNVILWKTETGEAVYQLFQKNM-----TKTTWPSIRFSSDEAVACRM--A-TNEIQ 73 (434)
Q Consensus 7 fSP~g~~L~t~~~~~-----~~~d~~v~iWd~~~g~~~~~~~~~~~-----~~~~~~~~~~S~d~~~la~~--~-~~~i~ 73 (434)
+||||++|..+..+. +..+..|.|||+.+++.+..+..... -...+ .+++||||++|... . ++.|-
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~-~~~ls~dgk~l~V~n~~p~~~V~ 131 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPW-MTSLTPDNKTLLFYQFSPSPAVG 131 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccc-eEEECCCCCEEEEecCCCCCEEE
Confidence 999999999887522 23467899999999999988775321 01223 67999999988866 3 57999
Q ss_pred EEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEE----E-
Q 013871 74 FFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQL----N- 148 (434)
Q Consensus 74 v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~----~- 148 (434)
+.|+.... ....+..++...+-.++....++.| .+ +......+.... .....+..+|..+...+ .
T Consensus 132 VvD~~~~k--vv~ei~vp~~~~vy~t~e~~~~~~~--~D-----g~~~~v~~d~~g-~~~~~~~~vf~~~~~~v~~rP~~ 201 (352)
T TIGR02658 132 VVDLEGKA--FVRMMDVPDCYHIFPTANDTFFMHC--RD-----GSLAKVGYGTKG-NPKIKPTEVFHPEDEYLINHPAY 201 (352)
T ss_pred EEECCCCc--EEEEEeCCCCcEEEEecCCccEEEe--ec-----CceEEEEecCCC-ceEEeeeeeecCCccccccCCce
Confidence 99998744 3334444432222222211111111 11 111111121110 11111222222111000 1
Q ss_pred ECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcce------eeeecC------CCCCeEEEEECcCCCEEEEEE-c
Q 013871 149 WNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHE------GLVPLR------KEGPVHDVQWSYSGSEFAVVY-G 215 (434)
Q Consensus 149 ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~------~~v~l~------~~~~i~~v~wspdg~~~av~~-g 215 (434)
+..+|+++.+... ..++.++..+... ..++.. ..+.+.-++++|+|+++.|.. +
T Consensus 202 ~~~dg~~~~vs~e-------------G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~ 268 (352)
T TIGR02658 202 SNKSGRLVWPTYT-------------GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQ 268 (352)
T ss_pred EcCCCcEEEEecC-------------CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecC
Confidence 2337776544311 1355555322110 111111 123445599999999998842 2
Q ss_pred c------CC-CeEEEEeccccee-EEeC-CcCeeEEEECCCCC-eEEEEecCCCCCeEEEEEccCCEEEEEe
Q 013871 216 F------MP-ASATIFNKKCRPI-LELG-SGPYNTVRWNPKGK-FLCLAGFGNLPGDMAFWDYVDGKQLGTT 277 (434)
Q Consensus 216 ~------~~-~~v~l~d~~~~~~-~~~~-~~~~~~i~~SP~g~-~l~~~~~~~~~g~i~iwd~~~~~~i~~~ 277 (434)
. ++ +.|.++|.+...+ ..+. ......|++||||+ +|++... ..+.|.++|..+++.+..+
T Consensus 269 ~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~--~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 269 RAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALST--GDKTLYIFDAETGKELSSV 338 (352)
T ss_pred CccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCC--CCCcEEEEECcCCeEEeee
Confidence 1 11 3899999976554 4443 45677899999999 6665543 2478999999999999887
No 223
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.25 E-value=1.7e-10 Score=110.53 Aligned_cols=247 Identities=11% Similarity=0.097 Sum_probs=155.7
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCC--------CcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeE
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTET--------GEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEI 72 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~--------g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i 72 (434)
|+++.|.|-...|+|++ +|+.|++|++.. -+.+.+|..+. ..|.|+..++++.++.++ .|++|
T Consensus 297 ir~l~~~~sep~lit~s-----ed~~lk~WnLqk~~~s~~~~~epi~tfraH~---gPVl~v~v~~n~~~~ysgg~Dg~I 368 (577)
T KOG0642|consen 297 IRALAFHPSEPVLITAS-----EDGTLKLWNLQKAKKSAEKDVEPILTFRAHE---GPVLCVVVPSNGEHCYSGGIDGTI 368 (577)
T ss_pred hhhhhcCCCCCeEEEec-----cccchhhhhhcccCCccccceeeeEEEeccc---CceEEEEecCCceEEEeeccCcee
Confidence 67889999999999999 999999999921 24567776654 788899999999999998 58999
Q ss_pred EEEeCCCCC----------CceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeeccc
Q 013871 73 QFFDTTDFP----------KGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRC 142 (434)
Q Consensus 73 ~v~~~~~~~----------~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~ 142 (434)
+.|+++... .......|.+.|..+++|+..+.++.+ ..++++++|.... ..+ ++...-+.
T Consensus 369 ~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llsc------s~DgTvr~w~~~~---~~~-~~f~~~~e 438 (577)
T KOG0642|consen 369 RCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSC------SSDGTVRLWEPTE---ESP-CTFGEPKE 438 (577)
T ss_pred eeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeee------cCCceEEeeccCC---cCc-cccCCccc
Confidence 999764211 012234566778899999985554432 5678999999876 333 21111111
Q ss_pred ceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeee-----c-CCCCCeEEEEECcCCCEEEEEEcc
Q 013871 143 STVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVP-----L-RKEGPVHDVQWSYSGSEFAVVYGF 216 (434)
Q Consensus 143 ~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~-----l-~~~~~i~~v~wspdg~~~av~~g~ 216 (434)
....+...-.+..++.+.. +... +...++.+++... ...+. - .....+.-+.|+|.+...+ ++.
T Consensus 439 ~g~Plsvd~~ss~~a~~~~---s~~~----~~~~~~~~ev~s~-~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~--~~h 508 (577)
T KOG0642|consen 439 HGYPLSVDRTSSRPAHSLA---SFRF----GYTSIDDMEVVSD-LLIFESSASPGPRRYPQINKVVSHPTADITF--TAH 508 (577)
T ss_pred cCCcceEeeccchhHhhhh---hccc----ccccchhhhhhhh-eeeccccCCCcccccCccceEEecCCCCeeE--ecc
Confidence 1111211111111111100 0000 1111121111110 00000 0 0124577899999886555 577
Q ss_pred CCCeEEEEecc-cceeEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC
Q 013871 217 MPASATIFNKK-CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA 279 (434)
Q Consensus 217 ~~~~v~l~d~~-~~~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~ 279 (434)
.+..|++||.+ +..+++. |...++++++-|+|-+|+++. .+|.+.+|.+....++.....
T Consensus 509 ed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s---~d~sv~l~kld~k~~~~es~~ 571 (577)
T KOG0642|consen 509 EDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGS---HDGSVRLWKLDVKTCVLESTA 571 (577)
T ss_pred cCCceecccccccccchheeeccceecceeecCCCceEEeec---CCceeehhhccchheeecccc
Confidence 88999999986 5555554 788899999999999999998 556999999877655554433
No 224
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.24 E-value=9.6e-08 Score=87.70 Aligned_cols=270 Identities=16% Similarity=0.207 Sum_probs=154.4
Q ss_pred CCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec----CCeEEEEeCCCC--CCceeeeeec--CCeeE
Q 013871 24 QEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA----TNEIQFFDTTDF--PKGILYRLRV--PGVAA 95 (434)
Q Consensus 24 ~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~----~~~i~v~~~~~~--~~~~~~~~~~--~~v~~ 95 (434)
+.+.|.+|++.+.+--.+..+.-.......-+.|+++++.|.++. .+.|-.|.++.. ......+... ..-..
T Consensus 14 ~s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~y 93 (346)
T COG2706 14 ESQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCY 93 (346)
T ss_pred CCCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeE
Confidence 567899999863321111111111124455789999999888872 357777777642 2111111111 23356
Q ss_pred EEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccc----------eeEEEECCCCCeEEEEEEeccc
Q 013871 96 FEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCS----------TVQLNWNRGSTGLLAVAQSDVD 165 (434)
Q Consensus 96 ~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~----------~~~~~ws~~G~~l~~~~~~~~d 165 (434)
+++++++ .++.+.. -..+.|.++.+.....-....+...+... .-...+.|+|++|++.. -
T Consensus 94 vsvd~~g-~~vf~An----Y~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~D-L--- 164 (346)
T COG2706 94 VSVDEDG-RFVFVAN----YHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPD-L--- 164 (346)
T ss_pred EEECCCC-CEEEEEE----ccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEee-c---
Confidence 7777773 3332211 11256777777543111112122222211 44567899999987641 1
Q ss_pred ccCceeecceeEEEEeeCCcceeee--ecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc--ceeEEe-------
Q 013871 166 KTNQSYYGESKLNYLTTDGTHEGLV--PLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC--RPILEL------- 234 (434)
Q Consensus 166 ~~~~~~~g~~~l~~l~~~~~~~~~v--~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~--~~~~~~------- 234 (434)
++.+. .+|.++ +|...... .+.....-..+.|+|+++...++ ..-+++|.+|.... ..+..+
T Consensus 165 G~Dri-----~~y~~~-dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v-~EL~stV~v~~y~~~~g~~~~lQ~i~tlP 237 (346)
T COG2706 165 GTDRI-----FLYDLD-DGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLV-NELNSTVDVLEYNPAVGKFEELQTIDTLP 237 (346)
T ss_pred CCceE-----EEEEcc-cCccccccccccCCCCCcceEEEcCCCcEEEEE-eccCCEEEEEEEcCCCceEEEeeeeccCc
Confidence 11121 234443 33221111 12234455789999999877775 56678999987643 222221
Q ss_pred ----CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEcc--CCE--EEEEe--eCCCceEEEECCCCCEEEEEEcCCcee
Q 013871 235 ----GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV--DGK--QLGTT--RAECSVTSEWSPDGRYFMTATTAPRLQ 304 (434)
Q Consensus 235 ----~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~--~~~--~i~~~--~~~~~~~~~wspdg~~l~tas~~prl~ 304 (434)
+....-.|..+|||++|.++..+. ..|.+|-+. +++ .+... .+...-.+.++|+|++|+++...
T Consensus 238 ~dF~g~~~~aaIhis~dGrFLYasNRg~--dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~---- 311 (346)
T COG2706 238 EDFTGTNWAAAIHISPDGRFLYASNRGH--DSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQK---- 311 (346)
T ss_pred cccCCCCceeEEEECCCCCEEEEecCCC--CeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccC----
Confidence 234456799999999999987764 267777665 343 22222 23356679999999999999884
Q ss_pred eCCcEEEEeecC
Q 013871 305 IDNGIKIFHHNG 316 (434)
Q Consensus 305 ~D~~i~iw~~~g 316 (434)
++.|.+|..+.
T Consensus 312 -sd~i~vf~~d~ 322 (346)
T COG2706 312 -SDNITVFERDK 322 (346)
T ss_pred -CCcEEEEEEcC
Confidence 56799998843
No 225
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=99.23 E-value=1.4e-08 Score=98.34 Aligned_cols=274 Identities=12% Similarity=0.131 Sum_probs=156.0
Q ss_pred cCCCcEEEEEecCCC----CCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCCCc
Q 013871 8 LRVGLIIQTFQKSST----PQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPKG 83 (434)
Q Consensus 8 SP~g~~L~t~~~~~~----~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~~ 83 (434)
||||+|++....... +..+.+.|+|+.+++........ .....+.|||||+++|...++.|.+.+.....
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~~----~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~-- 74 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPPP----PKLQDAKWSPDGKYIAFVRDNNLYLRDLATGQ-- 74 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-EE----TTBSEEEE-SSSTEEEEEETTEEEEESSTTSE--
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCCc----cccccceeecCCCeeEEEecCceEEEECCCCC--
Confidence 899999997542111 12367999999998754433221 34447899999999999999999999875531
Q ss_pred eeeeee--------------------cCCeeEEEEeCCCCCeEEEEecCCC-----------------------------
Q 013871 84 ILYRLR--------------------VPGVAAFEVSKAPGSHVAVFVPESK----------------------------- 114 (434)
Q Consensus 84 ~~~~~~--------------------~~~v~~~~~sp~~~~~ia~~~~~~~----------------------------- 114 (434)
..++. +..-..+-|||+ +..|+++.-+..
T Consensus 75 -~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd-~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G 152 (353)
T PF00930_consen 75 -ETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPD-SKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAG 152 (353)
T ss_dssp -EEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TT-SSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTT
T ss_pred -eEEeccccceeEEcCccceeccccccccccceEECCC-CCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCC
Confidence 12222 223456889999 556655422110
Q ss_pred CCCc--eEEEEEcCCCCCCCc--eeee---eecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcce
Q 013871 115 GSPA--SVQIYACGKDLQSQP--LARR---SFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHE 187 (434)
Q Consensus 115 ~~~~--~v~i~~~~~~~~~~~--i~~~---~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~ 187 (434)
.... .+.++++.+ ++. +... .........+.|.+++..+++.... .++.. ..+..++...+..
T Consensus 153 ~~np~v~l~v~~~~~---~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~n-R~q~~------~~l~~~d~~tg~~ 222 (353)
T PF00930_consen 153 DPNPRVSLFVVDLAS---GKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLN-RDQNR------LDLVLCDASTGET 222 (353)
T ss_dssp S---EEEEEEEESSS---TCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEE-TTSTE------EEEEEEEECTTTC
T ss_pred CcCCceEEEEEECCC---CcEEEeeeccccCCCccCcccceecCCCcEEEEEEcc-cCCCE------EEEEEEECCCCce
Confidence 0101 334455544 221 1111 0112334678999999866665432 22221 1245555533222
Q ss_pred ee-eecCCCCCe---EEEEEC-cCCCEEEEEEccCCC--eEEEEecccceeEEeC--CcCee-EEEECCCCCeEEEEecC
Q 013871 188 GL-VPLRKEGPV---HDVQWS-YSGSEFAVVYGFMPA--SATIFNKKCRPILELG--SGPYN-TVRWNPKGKFLCLAGFG 257 (434)
Q Consensus 188 ~~-v~l~~~~~i---~~v~ws-pdg~~~av~~g~~~~--~v~l~d~~~~~~~~~~--~~~~~-~i~~SP~g~~l~~~~~~ 257 (434)
.. ..-...+-| ..+.|. +++..|+.++- .++ .|.+++..+.....+. .-.|+ -+.|+++++.|...+..
T Consensus 223 ~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~-~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~ 301 (353)
T PF00930_consen 223 RVVLEETSDGWVDVYDPPHFLGPDGNEFLWISE-RDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANG 301 (353)
T ss_dssp EEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEE-TTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESS
T ss_pred eEEEEecCCcceeeecccccccCCCCEEEEEEE-cCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecC
Confidence 11 111112222 356665 88988888765 566 6777788877766664 34454 47899999877665543
Q ss_pred C--CCCeEEEEEcc-CCEEEEEeeCCCce-EEEECCCCCEEEEEEcC
Q 013871 258 N--LPGDMAFWDYV-DGKQLGTTRAECSV-TSEWSPDGRYFMTATTA 300 (434)
Q Consensus 258 ~--~~g~i~iwd~~-~~~~i~~~~~~~~~-~~~wspdg~~l~tas~~ 300 (434)
. ....|+..+++ .++........... .+.|||||++++...+.
T Consensus 302 ~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~s~ 348 (353)
T PF00930_consen 302 DNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYVDTYSG 348 (353)
T ss_dssp GGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSSEEEEEEES
T ss_pred CCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCCEEEEEEcC
Confidence 2 24467777787 66555444443333 79999999999987764
No 226
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.23 E-value=1.2e-09 Score=98.98 Aligned_cols=264 Identities=14% Similarity=0.228 Sum_probs=154.9
Q ss_pred CcceEEecCCCcEEEEEecCCCCCCCcEEEEEcCC---CcE-EE-EEeecCcC---------CCCCCeeeecCCCc---E
Q 013871 1 MLLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTET---GEA-VY-QLFQKNMT---------KTTWPSIRFSSDEA---V 63 (434)
Q Consensus 1 ~V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~---g~~-~~-~~~~~~~~---------~~~~~~~~~S~d~~---~ 63 (434)
+|.++.|...|.+|+|+. .++.|.++.-.. |+- .+ .|+.+... .+.+..+.|-+++. +
T Consensus 27 iis~vef~~~Ge~LatGd-----kgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~F 101 (433)
T KOG1354|consen 27 IISAVEFDHYGERLATGD-----KGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEF 101 (433)
T ss_pred ceeeEEeecccceEeecC-----CCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEE
Confidence 588999999999999988 778888885322 211 22 22222110 13456788988775 4
Q ss_pred EEEecCCeEEEEeCCCCCCce-eeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCC----ceee--
Q 013871 64 ACRMATNEIQFFDTTDFPKGI-LYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQ----PLAR-- 136 (434)
Q Consensus 64 la~~~~~~i~v~~~~~~~~~~-~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~----~i~~-- 136 (434)
|++..+.+|++|.+....... ...+..+ +.++.+.-..+|...+.. ....
T Consensus 102 LlstNdktiKlWKi~er~~k~~~~~~~~~-----------------------~~~~~~~~lr~p~~~~~~~~vea~prRv 158 (433)
T KOG1354|consen 102 LLSTNDKTIKLWKIRERGSKKEGYNLPEE-----------------------GPPGTITSLRLPVEGRHDLEVEASPRRV 158 (433)
T ss_pred EEecCCcceeeeeeecccccccccccccc-----------------------CCCCccceeeceeeccccceeeeeeeee
Confidence 555567799999987633211 0000000 011111111111110000 0001
Q ss_pred -eeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCC------CCCeEEEEECcCCCE
Q 013871 137 -RSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK------EGPVHDVQWSYSGSE 209 (434)
Q Consensus 137 -~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~------~~~i~~v~wspdg~~ 209 (434)
...|...+.++..|.|+...+.. .|.. .+||.+++....-.+|.+.. ..-|.+..|+|....
T Consensus 159 ~aNaHtyhiNSIS~NsD~Et~lSA----DdLR-------INLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn 227 (433)
T KOG1354|consen 159 YANAHTYHINSISVNSDKETFLSA----DDLR-------INLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCN 227 (433)
T ss_pred ccccceeEeeeeeecCccceEeec----ccee-------eeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHcc
Confidence 12244456678888888875432 1211 24566655443333443321 346788999996544
Q ss_pred EEEEEccCCCeEEEEecccceeE-------EeC------------CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEcc-
Q 013871 210 FAVVYGFMPASATIFNKKCRPIL-------ELG------------SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV- 269 (434)
Q Consensus 210 ~av~~g~~~~~v~l~d~~~~~~~-------~~~------------~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~- 269 (434)
+.+ |.+.-|.|+|.|++...+- ... ...|..+.||+.|+|+++-.+- +|.+||++
T Consensus 228 ~f~-YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyl----tvk~wD~nm 302 (433)
T KOG1354|consen 228 VFV-YSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYL----TVKLWDLNM 302 (433)
T ss_pred EEE-EecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccc----eeEEEeccc
Confidence 443 5677889999999833321 111 1345679999999999986542 79999985
Q ss_pred CCEEEEEeeCC--------------Cc---eEEEECCCCCEEEEEEcCCceeeCCcEEEEee
Q 013871 270 DGKQLGTTRAE--------------CS---VTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH 314 (434)
Q Consensus 270 ~~~~i~~~~~~--------------~~---~~~~wspdg~~l~tas~~prl~~D~~i~iw~~ 314 (434)
..+.+.+++-| ++ ..|+||-++.+++||+. .|-+++++.
T Consensus 303 e~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy------~n~frvf~~ 358 (433)
T KOG1354|consen 303 EAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSY------NNVFRVFNL 358 (433)
T ss_pred cCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccc------cceEEEecC
Confidence 33444444332 12 23899999999999999 999999995
No 227
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.22 E-value=6.6e-10 Score=103.11 Aligned_cols=192 Identities=15% Similarity=0.244 Sum_probs=129.0
Q ss_pred eEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeec
Q 013871 94 AAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYG 173 (434)
Q Consensus 94 ~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g 173 (434)
..++++++ +..+++ ++.++.+|+|+.|+ ...+.....+..++-.+.|+|||+.|+.+. .| ....|
T Consensus 148 k~vaf~~~-gs~lat-----gg~dg~lRv~~~Ps---~~t~l~e~~~~~eV~DL~FS~dgk~lasig---~d-~~~VW-- 212 (398)
T KOG0771|consen 148 KVVAFNGD-GSKLAT-----GGTDGTLRVWEWPS---MLTILEEIAHHAEVKDLDFSPDGKFLASIG---AD-SARVW-- 212 (398)
T ss_pred eEEEEcCC-CCEeee-----ccccceEEEEecCc---chhhhhhHhhcCccccceeCCCCcEEEEec---CC-ceEEE--
Confidence 44566665 455553 57889999999998 677777777888999999999999877653 22 22222
Q ss_pred ceeEEEEeeCCc-cee-eeecCCCCCeEEEEECcCC---CEEEEEEccCCCeEEEEecc---c-c--eeEEe--CCcCee
Q 013871 174 ESKLNYLTTDGT-HEG-LVPLRKEGPVHDVQWSYSG---SEFAVVYGFMPASATIFNKK---C-R--PILEL--GSGPYN 240 (434)
Q Consensus 174 ~~~l~~l~~~~~-~~~-~v~l~~~~~i~~v~wspdg---~~~av~~g~~~~~v~l~d~~---~-~--~~~~~--~~~~~~ 240 (434)
++..+ .-. .-+.+++.....+.|+-|+ ..++......-+.+..+|+. . + ...+. ....+.
T Consensus 213 -------~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siS 285 (398)
T KOG0771|consen 213 -------SVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSIS 285 (398)
T ss_pred -------EeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcce
Confidence 22221 111 1113334556677888766 22222222223355555542 1 1 11111 345789
Q ss_pred EEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEee-CC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecC
Q 013871 241 TVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTR-AE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG 316 (434)
Q Consensus 241 ~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~-~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g 316 (434)
+++.|++|+++++|+ ++|.|.|++..+.+++.... +| .++.++|+||.+++++.+. |+.+.|..+..
T Consensus 286 sl~VS~dGkf~AlGT---~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs------~~~~~v~~l~v 355 (398)
T KOG0771|consen 286 SLAVSDDGKFLALGT---MDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSS------DNEAAVTKLAV 355 (398)
T ss_pred eEEEcCCCcEEEEec---cCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCccccccc------CCceeEEEEee
Confidence 999999999999999 67899999999988776654 34 5566999999999999777 99999988865
No 228
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.22 E-value=8.3e-09 Score=99.82 Aligned_cols=296 Identities=15% Similarity=0.186 Sum_probs=162.6
Q ss_pred CcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceeeeee
Q 013871 11 GLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRLR 89 (434)
Q Consensus 11 g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~~ 89 (434)
+++++..++ .++.|.|.|..+.+.+..+.... ..-..+.|++||+++.... ++.|.++|+.+.. ...++.
T Consensus 5 ~~l~~V~~~----~~~~v~viD~~t~~~~~~i~~~~---~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~--~v~~i~ 75 (369)
T PF02239_consen 5 GNLFYVVER----GSGSVAVIDGATNKVVARIPTGG---APHAGLKFSPDGRYLYVANRDGTVSVIDLATGK--VVATIK 75 (369)
T ss_dssp GGEEEEEEG----GGTEEEEEETTT-SEEEEEE-ST---TEEEEEE-TT-SSEEEEEETTSEEEEEETTSSS--EEEEEE
T ss_pred ccEEEEEec----CCCEEEEEECCCCeEEEEEcCCC---CceeEEEecCCCCEEEEEcCCCeEEEEECCccc--EEEEEe
Confidence 345544442 57899999999999999987642 2111468999999887764 6899999998865 334444
Q ss_pred c-CCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecc-------cceeEEEECCCCCeEEEEEE
Q 013871 90 V-PGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFR-------CSTVQLNWNRGSTGLLAVAQ 161 (434)
Q Consensus 90 ~-~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~-------~~~~~~~ws~~G~~l~~~~~ 161 (434)
. ....++++||++. ++++- ...++.+.++|..+ .+++....... ...+.+.-++.+...++.
T Consensus 76 ~G~~~~~i~~s~DG~-~~~v~----n~~~~~v~v~D~~t---le~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~-- 145 (369)
T PF02239_consen 76 VGGNPRGIAVSPDGK-YVYVA----NYEPGTVSVIDAET---LEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVN-- 145 (369)
T ss_dssp -SSEEEEEEE--TTT-EEEEE----EEETTEEEEEETTT-----EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEE--
T ss_pred cCCCcceEEEcCCCC-EEEEE----ecCCCceeEecccc---ccceeecccccccccccCCCceeEEecCCCCEEEEE--
Confidence 3 3567899999954 44321 12345899999877 56665554332 123455556666543322
Q ss_pred ecccccCceeecceeEEEEeeCCccee-eeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeE-Ee--C--
Q 013871 162 SDVDKTNQSYYGESKLNYLTTDGTHEG-LVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPIL-EL--G-- 235 (434)
Q Consensus 162 ~~~d~~~~~~~g~~~l~~l~~~~~~~~-~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~-~~--~-- 235 (434)
...++ .++.++....... ...+......++..|+|++++|++. .....++-++|.+...+. .+ +
T Consensus 146 --lkd~~-------~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va-~~~sn~i~viD~~~~k~v~~i~~g~~ 215 (369)
T PF02239_consen 146 --LKDTG-------EIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVA-ANGSNKIAVIDTKTGKLVALIDTGKK 215 (369)
T ss_dssp --ETTTT-------EEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEE-EGGGTEEEEEETTTTEEEEEEE-SSS
T ss_pred --EccCC-------eEEEEEeccccccceeeecccccccccccCcccceeeec-ccccceeEEEeeccceEEEEeecccc
Confidence 11122 3555553332111 1122235678999999999999874 444569999998754433 22 1
Q ss_pred --CcCee-------EEEECC--CCCeE-EEEecCCCCCeEEEEEccCCEEEEEeeCC-CceEEEECCCCCEEEEEEc-CC
Q 013871 236 --SGPYN-------TVRWNP--KGKFL-CLAGFGNLPGDMAFWDYVDGKQLGTTRAE-CSVTSEWSPDGRYFMTATT-AP 301 (434)
Q Consensus 236 --~~~~~-------~i~~SP--~g~~l-~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-~~~~~~wspdg~~l~tas~-~p 301 (434)
..+.. ...|.- .+.+. ...+. ..+.+||..+.+.+..+... ....+.-+||++++.+... .|
T Consensus 216 p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~----~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~ 291 (369)
T PF02239_consen 216 PHPGPGANFPHPGFGPVWATSGLGYFAIPLIGT----DPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNP 291 (369)
T ss_dssp BEETTEEEEEETTTEEEEEEEBSSSSEEEEEE------TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-S
T ss_pred ccccccccccCCCcceEEeeccccceecccccC----CccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCC
Confidence 11111 122322 22222 22222 24667888889888888754 3356899999999999822 22
Q ss_pred ceeeCCcEEEEeecCce-eeeee-ccc--ceeeEEEcCCCCCCCC
Q 013871 302 RLQIDNGIKIFHHNGSL-FFKKM-FDK--LFQAEWKPVSPDKFGD 342 (434)
Q Consensus 302 rl~~D~~i~iw~~~g~~-~~~~~-~~~--~~~~~w~p~~~~~~~~ 342 (434)
. .+.|.|+|..... +.... ... +.++.|.|++..++-+
T Consensus 292 ~---~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS 333 (369)
T PF02239_consen 292 D---ADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVS 333 (369)
T ss_dssp S---HT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEE
T ss_pred C---CceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEE
Confidence 2 6899999986643 33321 123 7788888888876654
No 229
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.22 E-value=1.8e-09 Score=103.69 Aligned_cols=271 Identities=14% Similarity=0.174 Sum_probs=165.8
Q ss_pred CcEEEEEcCCCcEEEEEeec--------C-------------cCCCCCCeeeecCCCcEEEEecC--CeEEEEeCCCCCC
Q 013871 26 KNVILWKTETGEAVYQLFQK--------N-------------MTKTTWPSIRFSSDEAVACRMAT--NEIQFFDTTDFPK 82 (434)
Q Consensus 26 ~~v~iWd~~~g~~~~~~~~~--------~-------------~~~~~~~~~~~S~d~~~la~~~~--~~i~v~~~~~~~~ 82 (434)
+.|+||++..|+.+..+... + .....-+.+.-||||+||...+. -.|++||+.+.+.
T Consensus 7 NdVkiYnvS~~kslP~Wls~r~kR~lkkd~~~~~rieLiQdfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSL 86 (703)
T KOG2321|consen 7 NDVKIYNVSAGKSLPDWLSDRRKRQLKKDVDYRQRIELIQDFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSL 86 (703)
T ss_pred CceEEEEeecCCCchhhhhhHHHHHHhhchHHHHHHHHHHhcCCccccceeEecCCCcEEEEecccCCceEEEEccccee
Confidence 56888888777654433220 0 01233447889999999876643 4999999998776
Q ss_pred ceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEE---------EcCCCCCCCceeeeeecccceeEEEECCCC
Q 013871 83 GILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIY---------ACGKDLQSQPLARRSFFRCSTVQLNWNRGS 153 (434)
Q Consensus 83 ~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~---------~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G 153 (434)
.....+..+.|...-+|-| -..+++..- +..|.+. .+|.+ . ..|+.+.-.
T Consensus 87 KFERhlDae~V~feiLsDD-~SK~v~L~~-----DR~IefHak~G~hy~~RIP~~------------G---RDm~y~~~s 145 (703)
T KOG2321|consen 87 KFERHLDAEVVDFEILSDD-YSKSVFLQN-----DRTIEFHAKYGRHYRTRIPKF------------G---RDMKYHKPS 145 (703)
T ss_pred eeeecccccceeEEEeccc-hhhheEeec-----CceeeehhhcCeeeeeecCcC------------C---ccccccCCC
Confidence 5544555555555555544 111211111 1122221 12221 1 123333333
Q ss_pred CeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCC-CCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeE
Q 013871 154 TGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK-EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPIL 232 (434)
Q Consensus 154 ~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~-~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~ 232 (434)
.-|++.++. ..+|.+++..+ .-..++.. .++++.+..++-...|+ +|..++.+.+||.++....
T Consensus 146 cDly~~gsg------------~evYRlNLEqG-rfL~P~~~~~~~lN~v~in~~hgLla--~Gt~~g~VEfwDpR~ksrv 210 (703)
T KOG2321|consen 146 CDLYLVGSG------------SEVYRLNLEQG-RFLNPFETDSGELNVVSINEEHGLLA--CGTEDGVVEFWDPRDKSRV 210 (703)
T ss_pred ccEEEeecC------------cceEEEEcccc-ccccccccccccceeeeecCccceEE--ecccCceEEEecchhhhhh
Confidence 334443322 13677776554 23334443 48899999998777777 5888999999999765432
Q ss_pred E-e--------CC-----cCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC---CceEEEECCCC--CE
Q 013871 233 E-L--------GS-----GPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE---CSVTSEWSPDG--RY 293 (434)
Q Consensus 233 ~-~--------~~-----~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~---~~~~~~wspdg--~~ 293 (434)
. + +. ..++++.|+.+|-.+++|. ..|.++|||++..+.+..-.+. .+..+.|-+.+ ..
T Consensus 211 ~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGt---s~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~ 287 (703)
T KOG2321|consen 211 GTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGT---STGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNK 287 (703)
T ss_pred eeeecccccCCCccccccCcceEEEecCCceeEEeec---cCCcEEEEEcccCCceeecccCCccceeeecccccCCCce
Confidence 1 1 11 2388999999999999998 6689999999988766554443 44558997763 34
Q ss_pred EEEEEcCCceeeCCcEEEEee-cCceeeee-ecccceeeEEEcCCCCCCCC
Q 013871 294 FMTATTAPRLQIDNGIKIFHH-NGSLFFKK-MFDKLFQAEWKPVSPDKFGD 342 (434)
Q Consensus 294 l~tas~~prl~~D~~i~iw~~-~g~~~~~~-~~~~~~~~~w~p~~~~~~~~ 342 (434)
+++.. ...++|||- +|+.+... +...+..++.-|..-.+|.+
T Consensus 288 v~S~D-------k~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~A 331 (703)
T KOG2321|consen 288 VVSMD-------KRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTA 331 (703)
T ss_pred EEecc-------hHHhhhcccccCCceeeccccCCcCceeeecCCceEEEe
Confidence 44432 568999996 67665544 44568888888876555443
No 230
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.20 E-value=9.1e-11 Score=111.65 Aligned_cols=130 Identities=19% Similarity=0.456 Sum_probs=99.4
Q ss_pred CCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-----c------------------------ceeE--EeCCcCeeEEE
Q 013871 195 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-----C------------------------RPIL--ELGSGPYNTVR 243 (434)
Q Consensus 195 ~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~-----~------------------------~~~~--~~~~~~~~~i~ 243 (434)
...|.++.|-|.+..++++ ...++.+++||.. . +++. .+..+.+|.++
T Consensus 219 ktsvT~ikWvpg~~~~Fl~-a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~ 297 (636)
T KOG2394|consen 219 KSSVTCIKWVPGSDSLFLV-AHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFA 297 (636)
T ss_pred ccceEEEEEEeCCCceEEE-EEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEecccccccee
Confidence 4688999999966554442 4556788888642 0 1111 12467889999
Q ss_pred ECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc-eee
Q 013871 244 WNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS-LFF 320 (434)
Q Consensus 244 ~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~-~~~ 320 (434)
|||||++||+.+ .||.++|||..+.+++...+.. ...+++|||||+||+|++. |.-|.||.+..+ ++.
T Consensus 298 FS~DG~~LA~VS---qDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGE------DDLVtVwSf~erRVVA 368 (636)
T KOG2394|consen 298 FSPDGKYLATVS---QDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGE------DDLVTVWSFEERRVVA 368 (636)
T ss_pred EcCCCceEEEEe---cCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCC------cceEEEEEeccceEEE
Confidence 999999999999 7789999999998887776653 6778999999999999999 999999999655 444
Q ss_pred ee--ecccceeeEEEc
Q 013871 321 KK--MFDKLFQAEWKP 334 (434)
Q Consensus 321 ~~--~~~~~~~~~w~p 334 (434)
.. +..=+..|+|.|
T Consensus 369 RGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 369 RGQGHKSWVSVVAFDP 384 (636)
T ss_pred eccccccceeeEeecc
Confidence 32 445577888887
No 231
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.18 E-value=4e-10 Score=101.32 Aligned_cols=226 Identities=11% Similarity=0.122 Sum_probs=130.6
Q ss_pred cceEEecCCC-cEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCC
Q 013871 2 LLLLTCLRVG-LIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTD 79 (434)
Q Consensus 2 V~~l~fSP~g-~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~ 79 (434)
|..|.|.|+. ++|++++ +|..|++|++.++.++.-|.+-..|...+.++.|+.||.+++++ .|.+|++|+++.
T Consensus 138 INeik~~p~~~qlvls~S-----kD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~ 212 (385)
T KOG1034|consen 138 INEIKFHPDRPQLVLSAS-----KDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNV 212 (385)
T ss_pred chhhhcCCCCCcEEEEec-----CCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecCh
Confidence 5678899976 6888888 89999999999999999988877788999999999999999987 577999999985
Q ss_pred CCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEE------ECCCC
Q 013871 80 FPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLN------WNRGS 153 (434)
Q Consensus 80 ~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~------ws~~G 153 (434)
.+.. -+++ .++.|+|++...- | |. -.+.+.+.. +...|...+-++. .|..+
T Consensus 213 ~~f~----~~lE--~s~~~~~~~t~~p--f-pt-----~~~~fp~fs---------t~diHrnyVDCvrw~gd~ilSksc 269 (385)
T KOG1034|consen 213 KEFK----NKLE--LSITYSPNKTTRP--F-PT-----PKTHFPDFS---------TTDIHRNYVDCVRWFGDFILSKSC 269 (385)
T ss_pred hHHh----hhhh--hhcccCCCCccCc--C-Cc-----ccccccccc---------ccccccchHHHHHHHhhheeeccc
Confidence 3211 1111 1245566531100 0 00 001111110 1111211111111 22222
Q ss_pred CeEEEEEEecccccCceeecceeEEEEe-eCCcc--eeeeecCCCCCeEEE--EECcCCCEEEEEEccCCCeEEEEeccc
Q 013871 154 TGLLAVAQSDVDKTNQSYYGESKLNYLT-TDGTH--EGLVPLRKEGPVHDV--QWSYSGSEFAVVYGFMPASATIFNKKC 228 (434)
Q Consensus 154 ~~l~~~~~~~~d~~~~~~~g~~~l~~l~-~~~~~--~~~v~l~~~~~i~~v--~wspdg~~~av~~g~~~~~v~l~d~~~ 228 (434)
..-++++... +... .++.+. ..+.. ...+.++ ...|.-+ +|.|-++.+| .|...+++.+||++.
T Consensus 270 enaI~~w~pg--kl~e------~~~~vkp~es~~Ti~~~~~~~-~c~iWfirf~~d~~~~~la--~gnq~g~v~vwdL~~ 338 (385)
T KOG1034|consen 270 ENAIVCWKPG--KLEE------SIHNVKPPESATTILGEFDYP-MCDIWFIRFAFDPWQKMLA--LGNQSGKVYVWDLDN 338 (385)
T ss_pred CceEEEEecc--hhhh------hhhccCCCccceeeeeEeccC-ccceEEEEEeecHHHHHHh--hccCCCcEEEEECCC
Confidence 2122222110 0000 011000 00000 0011111 3455544 4556667777 488899999999974
Q ss_pred cee-------EEeCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEcc
Q 013871 229 RPI-------LELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV 269 (434)
Q Consensus 229 ~~~-------~~~~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~ 269 (434)
..- +......|.+.+||-||.+|++.. .+|+|.-||.-
T Consensus 339 ~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vc---dd~~Vwrwdrv 383 (385)
T KOG1034|consen 339 NEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVC---DDGTVWRWDRV 383 (385)
T ss_pred CCCccCceEEeccccceeeeeeecccCcEEEEEe---CCCcEEEEEee
Confidence 332 222456788899999999998887 66899999864
No 232
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.18 E-value=1.4e-08 Score=93.47 Aligned_cols=213 Identities=17% Similarity=0.235 Sum_probs=141.9
Q ss_pred CCcEEEEecCCeEEEEeCCCCCC--ceeeeee-cCCeeEEEEeCCCCCeEEEEecCCCCCC--ceEEEEEcCCCCCCCce
Q 013871 60 DEAVACRMATNEIQFFDTTDFPK--GILYRLR-VPGVAAFEVSKAPGSHVAVFVPESKGSP--ASVQIYACGKDLQSQPL 134 (434)
Q Consensus 60 d~~~la~~~~~~i~v~~~~~~~~--~~~~~~~-~~~v~~~~~sp~~~~~ia~~~~~~~~~~--~~v~i~~~~~~~~~~~i 134 (434)
||.++.+..+|.+++|....... .....+. .+++..+.-+|....++|+ +|.. ..+.||++.. .+++
T Consensus 115 dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~-----GGke~~n~lkiwdle~---~~qi 186 (412)
T KOG3881|consen 115 DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVAT-----GGKENINELKIWDLEQ---SKQI 186 (412)
T ss_pred CCEEEEEecCCcEEEEeccCCccccccceeeecCCceeeeccCCCCCceEec-----Cchhcccceeeeeccc---ceee
Confidence 78888888889999999875331 1112222 3466667667764444442 4444 6788899865 2211
Q ss_pred eeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcC--CCEEEE
Q 013871 135 ARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYS--GSEFAV 212 (434)
Q Consensus 135 ~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspd--g~~~av 212 (434)
-+ +. |+..++| .-++ .--+.++.|-|. ...|+.
T Consensus 187 w~-----aK------NvpnD~L------------------------------~LrV----PvW~tdi~Fl~g~~~~~fat 221 (412)
T KOG3881|consen 187 WS-----AK------NVPNDRL------------------------------GLRV----PVWITDIRFLEGSPNYKFAT 221 (412)
T ss_pred ee-----cc------CCCCccc------------------------------ccee----eeeeccceecCCCCCceEEE
Confidence 10 00 1111111 0011 113346667666 667775
Q ss_pred EEccCCCeEEEEecc--cceeEE--eCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEE-eeCC--CceEE
Q 013871 213 VYGFMPASATIFNKK--CRPILE--LGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGT-TRAE--CSVTS 285 (434)
Q Consensus 213 ~~g~~~~~v~l~d~~--~~~~~~--~~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~-~~~~--~~~~~ 285 (434)
+ ..-+.+++||.+ -.++.+ +...++.++..-|.|++|++|. ..|.|..||++.++.+.. +.+- .+..+
T Consensus 222 ~--T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn---~~g~l~~FD~r~~kl~g~~~kg~tGsirsi 296 (412)
T KOG3881|consen 222 I--TRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGN---TKGQLAKFDLRGGKLLGCGLKGITGSIRSI 296 (412)
T ss_pred E--ecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEec---ccchhheecccCceeeccccCCccCCcceE
Confidence 4 445699999996 345544 4688999999999999999887 668999999999998877 4442 66679
Q ss_pred EECCCCCEEEEEEcCCceeeCCcEEEEeecC-ceeeeeec-ccceeeEEEcCC
Q 013871 286 EWSPDGRYFMTATTAPRLQIDNGIKIFHHNG-SLFFKKMF-DKLFQAEWKPVS 336 (434)
Q Consensus 286 ~wspdg~~l~tas~~prl~~D~~i~iw~~~g-~~~~~~~~-~~~~~~~w~p~~ 336 (434)
.-+|.++++++++. |+-+||+|... +++++... ..+..+..++.-
T Consensus 297 h~hp~~~~las~GL------DRyvRIhD~ktrkll~kvYvKs~lt~il~~~~~ 343 (412)
T KOG3881|consen 297 HCHPTHPVLASCGL------DRYVRIHDIKTRKLLHKVYVKSRLTFILLRDDV 343 (412)
T ss_pred EEcCCCceEEeecc------ceeEEEeecccchhhhhhhhhccccEEEecCCc
Confidence 99999999999999 99999999977 45555433 466666666653
No 233
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.18 E-value=1.1e-09 Score=98.14 Aligned_cols=235 Identities=13% Similarity=0.169 Sum_probs=161.6
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEc------CC------------------------------C----cEEEE
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKT------ET------------------------------G----EAVYQ 41 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~------~~------------------------------g----~~~~~ 41 (434)
|.+|.|++.|..++|.+ .|++.+||.. .. | .++..
T Consensus 193 VNsikfh~s~~L~lTaS-----GD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ 267 (481)
T KOG0300|consen 193 VNSIKFHNSGLLLLTAS-----GDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMR 267 (481)
T ss_pred eeeEEeccccceEEEcc-----CCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeee
Confidence 68999999999999988 6777777751 00 0 01233
Q ss_pred EeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceE
Q 013871 42 LFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASV 120 (434)
Q Consensus 42 ~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v 120 (434)
|.+ |...+.+..|-..|+.+++++ |.+-.+||+...+.......|....+.++-+|. ..++.. ...+.+.
T Consensus 268 ltg---H~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHpt-QrLVvT-----sSrDtTF 338 (481)
T KOG0300|consen 268 LTG---HRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPT-QRLVVT-----SSRDTTF 338 (481)
T ss_pred eec---cccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCc-ceEEEE-----eccCcee
Confidence 333 335555778888899888885 679999999987765556666666777777776 233332 2445689
Q ss_pred EEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEE
Q 013871 121 QIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHD 200 (434)
Q Consensus 121 ~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~ 200 (434)
++|++... -+.+.....|...+.+..|+-+.+ +.+...|.+.+.| .+ ........++....+++.
T Consensus 339 RLWDFRea--I~sV~VFQGHtdtVTS~vF~~dd~----vVSgSDDrTvKvW-------dL--rNMRsplATIRtdS~~NR 403 (481)
T KOG0300|consen 339 RLWDFREA--IQSVAVFQGHTDTVTSVVFNTDDR----VVSGSDDRTVKVW-------DL--RNMRSPLATIRTDSPANR 403 (481)
T ss_pred Eeccchhh--cceeeeecccccceeEEEEecCCc----eeecCCCceEEEe-------ee--ccccCcceeeecCCccce
Confidence 99998642 455666777888888899988766 3344466666643 33 222233344445789999
Q ss_pred EEECcCCCEEEEEEccCCCeEEEEecccceeEEe-------CCcCeeEEEECCCC--CeEEEEecCCCCCeEEEEEccC
Q 013871 201 VQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL-------GSGPYNTVRWNPKG--KFLCLAGFGNLPGDMAFWDYVD 270 (434)
Q Consensus 201 v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~~-------~~~~~~~i~~SP~g--~~l~~~~~~~~~g~i~iwd~~~ 270 (434)
++.+..+..+++ .-.+..|+|||+.++-+..+ |..-+.|++|+.+- ..|+++|||. .+.=|.+..
T Consensus 404 vavs~g~~iIAi--PhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR---~v~gW~in~ 477 (481)
T KOG0300|consen 404 VAVSKGHPIIAI--PHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDR---MVAGWKINT 477 (481)
T ss_pred eEeecCCceEEe--ccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccc---eeeeeEecc
Confidence 999987777775 44456999999988765544 55667899997654 3677788775 777787653
No 234
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.18 E-value=3.9e-09 Score=102.58 Aligned_cols=240 Identities=15% Similarity=0.178 Sum_probs=144.4
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEE--EeecCcCCCCCCeeeecCCCc-EEEEe-cCCeEEEEeC
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQ--LFQKNMTKTTWPSIRFSSDEA-VACRM-ATNEIQFFDT 77 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~--~~~~~~~~~~~~~~~~S~d~~-~la~~-~~~~i~v~~~ 77 (434)
|..+.|-|....|++.+ .|.++++||+++++++.. +.++ ...+.+++|.+++. .|+++ -|++|.|||+
T Consensus 103 ifDl~wapge~~lVsas-----GDsT~r~Wdvk~s~l~G~~~~~GH---~~SvkS~cf~~~n~~vF~tGgRDg~illWD~ 174 (720)
T KOG0321|consen 103 IFDLKWAPGESLLVSAS-----GDSTIRPWDVKTSRLVGGRLNLGH---TGSVKSECFMPTNPAVFCTGGRDGEILLWDC 174 (720)
T ss_pred eEeeccCCCceeEEEcc-----CCceeeeeeeccceeecceeeccc---ccccchhhhccCCCcceeeccCCCcEEEEEE
Confidence 55678889777888888 899999999999988766 5554 47888999999765 66666 4789999997
Q ss_pred CCCCC---------------c-------eeeeee-----cCCeeE---EEEeCCCCCeEEEEecCCCCCCceEEEEEcCC
Q 013871 78 TDFPK---------------G-------ILYRLR-----VPGVAA---FEVSKAPGSHVAVFVPESKGSPASVQIYACGK 127 (434)
Q Consensus 78 ~~~~~---------------~-------~~~~~~-----~~~v~~---~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~ 127 (434)
..... . ...+.+ ...|.+ +.+.-| +.+|+. .+..++.|++||+..
T Consensus 175 R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkD-e~tlaS----aga~D~~iKVWDLRk 249 (720)
T KOG0321|consen 175 RCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKD-ESTLAS----AGAADSTIKVWDLRK 249 (720)
T ss_pred eccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEec-cceeee----ccCCCcceEEEeecc
Confidence 32110 0 000000 001222 222333 223321 134588999999975
Q ss_pred CC---CCCceeeeeec-----ccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeE
Q 013871 128 DL---QSQPLARRSFF-----RCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVH 199 (434)
Q Consensus 128 ~~---~~~~i~~~~~~-----~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~ 199 (434)
.. ..++.....++ ....+.+.....|++|++-+. |. .||.+++.+.....+.+-....+.
T Consensus 250 ~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCt---D~---------sIy~ynm~s~s~sP~~~~sg~~~~ 317 (720)
T KOG0321|consen 250 NYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCT---DN---------SIYFYNMRSLSISPVAEFSGKLNS 317 (720)
T ss_pred cccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEec---CC---------cEEEEeccccCcCchhhccCcccc
Confidence 21 12233222222 234566777778888866542 32 345554444322222111111111
Q ss_pred ----EEEECcCCCEEEEEEccCCCeEEEEecccce----eEEeCCcCeeEEEECCCCC-eEEEEecCCCCCeEEEEEccC
Q 013871 200 ----DVQWSYSGSEFAVVYGFMPASATIFNKKCRP----ILELGSGPYNTVRWNPKGK-FLCLAGFGNLPGDMAFWDYVD 270 (434)
Q Consensus 200 ----~v~wspdg~~~av~~g~~~~~v~l~d~~~~~----~~~~~~~~~~~i~~SP~g~-~l~~~~~~~~~g~i~iwd~~~ 270 (434)
.-..+||+.+++ +|..|..+++|.+..-. +...|...+.+++|.|..- -+++++. |..+.||++.+
T Consensus 318 sf~vks~lSpd~~~l~--SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSd---D~~~kiW~l~~ 392 (720)
T KOG0321|consen 318 SFYVKSELSPDDCSLL--SGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSD---DFRVKIWRLSN 392 (720)
T ss_pred eeeeeeecCCCCceEe--ccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeecc---CcceEEEeccC
Confidence 235689998888 79999999999885321 2223778899999988543 4455563 45999999875
Q ss_pred C
Q 013871 271 G 271 (434)
Q Consensus 271 ~ 271 (434)
+
T Consensus 393 ~ 393 (720)
T KOG0321|consen 393 G 393 (720)
T ss_pred c
Confidence 4
No 235
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.16 E-value=6e-09 Score=104.13 Aligned_cols=244 Identities=15% Similarity=0.112 Sum_probs=144.6
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcE--EEEEe-ecCcCCCCCCeeeecCCC---cEEEEecCCeEEEE
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEA--VYQLF-QKNMTKTTWPSIRFSSDE---AVACRMATNEIQFF 75 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~--~~~~~-~~~~~~~~~~~~~~S~d~---~~la~~~~~~i~v~ 75 (434)
|.|+.|+|....|+.++- .+|.|.+||+..+.. ...+. ....|...+..+.|..+. .++..+.||.|..|
T Consensus 245 v~~~~f~p~~p~ll~gG~----y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 245 VTCLKFCPFDPNLLAGGC----YNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW 320 (555)
T ss_pred eeEEEeccCCcceEEeec----cCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence 789999997766665542 689999999987654 21111 111244666688897644 35555579999999
Q ss_pred eCCCCCCcee-----eee-------ecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEE---EEcCCC--CCCCceeeee
Q 013871 76 DTTDFPKGIL-----YRL-------RVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQI---YACGKD--LQSQPLARRS 138 (434)
Q Consensus 76 ~~~~~~~~~~-----~~~-------~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i---~~~~~~--~~~~~i~~~~ 138 (434)
++........ ... ...++..++|.|.....+.+-.. .|.|.- ..+... ...+.+....
T Consensus 321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe-----~G~v~~~~r~g~~~~~~~~~~~~~~~~ 395 (555)
T KOG1587|consen 321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTE-----EGKVYKGCRKGYTPAPEVSYKGHSTFI 395 (555)
T ss_pred eccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcC-----CcEEEEEeccCCccccccccccccccc
Confidence 9865432110 011 12357888888874443322111 122221 111110 0012233445
Q ss_pred ecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecC-CCCCeEEEEECcCCCEEEEEEccC
Q 013871 139 FFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR-KEGPVHDVQWSYSGSEFAVVYGFM 217 (434)
Q Consensus 139 ~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~-~~~~i~~v~wspdg~~~av~~g~~ 217 (434)
.|...+..+.+||=+..+...+ .|=+.+. |.-.. .......+. ....|++++|||.-.-+.+ ++.+
T Consensus 396 ~h~g~v~~v~~nPF~~k~fls~---gDW~vri-------Ws~~~--~~~Pl~~~~~~~~~v~~vaWSptrpavF~-~~d~ 462 (555)
T KOG1587|consen 396 THIGPVYAVSRNPFYPKNFLSV---GDWTVRI-------WSEDV--IASPLLSLDSSPDYVTDVAWSPTRPAVFA-TVDG 462 (555)
T ss_pred ccCcceEeeecCCCccceeeee---ccceeEe-------ccccC--CCCcchhhhhccceeeeeEEcCcCceEEE-EEcC
Confidence 5677888899999877654332 1323322 22110 111111222 2345999999997654444 5788
Q ss_pred CCeEEEEecc---cceeEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccC
Q 013871 218 PASATIFNKK---CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD 270 (434)
Q Consensus 218 ~~~v~l~d~~---~~~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~ 270 (434)
+|.+.+||+. ..++.+. +....+.+.|++.|++|++|. ..|++.+|++..
T Consensus 463 ~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd---~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 463 DGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGD---ANGTTHILKLSE 517 (555)
T ss_pred CCceehhhhhccccCCcccccccccccceeecCCCCcEEEEec---CCCcEEEEEcCc
Confidence 9999999984 3344332 456667899999999999998 678999999863
No 236
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.15 E-value=2.1e-09 Score=103.73 Aligned_cols=234 Identities=15% Similarity=0.160 Sum_probs=157.5
Q ss_pred eeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEeccc
Q 013871 86 YRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVD 165 (434)
Q Consensus 86 ~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d 165 (434)
.+.|...|.+++..|. +..++ +++.+|+|+||.+.+ +.++....+- ..+.++.|+|.+..-++.+..+..
T Consensus 396 yrGHtg~Vr~iSvdp~-G~wla-----sGsdDGtvriWEi~T---gRcvr~~~~d-~~I~~vaw~P~~~~~vLAvA~~~~ 465 (733)
T KOG0650|consen 396 YRGHTGLVRSISVDPS-GEWLA-----SGSDDGTVRIWEIAT---GRCVRTVQFD-SEIRSVAWNPLSDLCVLAVAVGEC 465 (733)
T ss_pred EeccCCeEEEEEecCC-cceee-----ecCCCCcEEEEEeec---ceEEEEEeec-ceeEEEEecCCCCceeEEEEecCc
Confidence 4556667899999996 45554 578889999999998 7888877654 478899999988754444333222
Q ss_pred c--cCceeec--------cee---------------EEEEeeC--CcceeeeecCCCCCeEEEEECcCCCEEEEEEccCC
Q 013871 166 K--TNQSYYG--------ESK---------------LNYLTTD--GTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMP 218 (434)
Q Consensus 166 ~--~~~~~~g--------~~~---------------l~~l~~~--~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~ 218 (434)
. .+- ..| ... .|.-... ......+.+.+..+|.++.|+-.|.+|+++.+...
T Consensus 466 ~~ivnp-~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~ 544 (733)
T KOG0650|consen 466 VLIVNP-IFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSG 544 (733)
T ss_pred eEEeCc-cccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCC
Confidence 0 000 011 000 0000000 00011234555778999999999999998766433
Q ss_pred -CeEEEEeccccee---EEeCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCC
Q 013871 219 -ASATIFNKKCRPI---LELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGR 292 (434)
Q Consensus 219 -~~v~l~d~~~~~~---~~~~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~ 292 (434)
..|.|+++..... +....+.+.++.|+|.-.+|+++.-. .|+|||+...+++..+... .+..++.+|.|.
T Consensus 545 ~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~----~vRiYdL~kqelvKkL~tg~kwiS~msihp~GD 620 (733)
T KOG0650|consen 545 NKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQR----SVRIYDLSKQELVKKLLTGSKWISSMSIHPNGD 620 (733)
T ss_pred cceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEecc----ceEEEehhHHHHHHHHhcCCeeeeeeeecCCCC
Confidence 3788888853322 23357888999999999999988643 6999999887665554333 566699999999
Q ss_pred EEEEEEcCCceeeCCcEEEEeecCc--eeee--eecccceeeEEEcCCCCCC
Q 013871 293 YFMTATTAPRLQIDNGIKIFHHNGS--LFFK--KMFDKLFQAEWKPVSPDKF 340 (434)
Q Consensus 293 ~l~tas~~prl~~D~~i~iw~~~g~--~~~~--~~~~~~~~~~w~p~~~~~~ 340 (434)
.|+.++. |+.+..+|++-. .... .+...+..|++++.-+...
T Consensus 621 nli~gs~------d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfa 666 (733)
T KOG0650|consen 621 NLILGSY------DKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFA 666 (733)
T ss_pred eEEEecC------CCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceee
Confidence 9999999 999999998533 2222 2345678888888755433
No 237
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.15 E-value=2.8e-10 Score=106.57 Aligned_cols=248 Identities=13% Similarity=0.184 Sum_probs=161.3
Q ss_pred ceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCCC
Q 013871 3 LLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPK 82 (434)
Q Consensus 3 ~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~ 82 (434)
+.+.|+.+|++|+..+ ..+.|-.+|..++.....+... +.+..++|-.+++|+|.+-.+-+.|||...-+.
T Consensus 133 Y~~~ytrnGrhlllgG-----rKGHlAa~Dw~t~~L~~Ei~v~----Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtEl 203 (545)
T KOG1272|consen 133 YHLDYTRNGRHLLLGG-----RKGHLAAFDWVTKKLHFEINVM----ETVRDVTFLHNEQFFAVAQKKYVYVYDNNGTEL 203 (545)
T ss_pred eeeeecCCccEEEecC-----Cccceeeeecccceeeeeeehh----hhhhhhhhhcchHHHHhhhhceEEEecCCCcEE
Confidence 3578999999999887 5688999999999987777654 667789999999999999999999999765332
Q ss_pred ceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEe
Q 013871 83 GILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQS 162 (434)
Q Consensus 83 ~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~ 162 (434)
...+- ...|..+.|-|. ..+++ +.+..+.+.--|+.. ++.+++
T Consensus 204 -HClk~-~~~v~rLeFLPy-HfLL~-----~~~~~G~L~Y~DVS~---GklVa~-------------------------- 246 (545)
T KOG1272|consen 204 -HCLKR-HIRVARLEFLPY-HFLLV-----AASEAGFLKYQDVST---GKLVAS-------------------------- 246 (545)
T ss_pred -eehhh-cCchhhhcccch-hheee-----ecccCCceEEEeech---hhhhHH--------------------------
Confidence 11111 223555555554 11111 111122222222222 111100
Q ss_pred cccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-cceeEEe--CCcCe
Q 013871 163 DVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL--GSGPY 239 (434)
Q Consensus 163 ~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~-~~~~~~~--~~~~~ 239 (434)
+. ...|.+..+.-+|-...+. .|...|.|.+|.-. .+++..+ |.+++
T Consensus 247 ---------------------------~~-t~~G~~~vm~qNP~NaVih--~GhsnGtVSlWSP~skePLvKiLcH~g~V 296 (545)
T KOG1272|consen 247 ---------------------------IR-TGAGRTDVMKQNPYNAVIH--LGHSNGTVSLWSPNSKEPLVKILCHRGPV 296 (545)
T ss_pred ---------------------------HH-ccCCccchhhcCCccceEE--EcCCCceEEecCCCCcchHHHHHhcCCCc
Confidence 00 0145566666666554444 48888999999875 3444443 89999
Q ss_pred eEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC-CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEee--cC
Q 013871 240 NTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA-ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH--NG 316 (434)
Q Consensus 240 ~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~-~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~--~g 316 (434)
++|++.|+|+|++++| +|..|.|||+++...+.++.. +....+++|-.| ++.++. ...+.||.= .|
T Consensus 297 ~siAv~~~G~YMaTtG---~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~Sqkg--lLA~~~------G~~v~iw~d~~~~ 365 (545)
T KOG1272|consen 297 SSIAVDRGGRYMATTG---LDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKG--LLALSY------GDHVQIWKDALKG 365 (545)
T ss_pred ceEEECCCCcEEeecc---cccceeEeeeccccccceeecCCCcccccccccc--ceeeec------CCeeeeehhhhcC
Confidence 9999999999999999 555999999998877766655 455668888765 444455 678899963 21
Q ss_pred ----ceeeeee--cccceeeEEEcCCC
Q 013871 317 ----SLFFKKM--FDKLFQAEWKPVSP 337 (434)
Q Consensus 317 ----~~~~~~~--~~~~~~~~w~p~~~ 337 (434)
...|..+ ...+-.+.|.|...
T Consensus 366 s~~~~~pYm~H~~~~~V~~l~FcP~ED 392 (545)
T KOG1272|consen 366 SGHGETPYMNHRCGGPVEDLRFCPYED 392 (545)
T ss_pred CCCCCcchhhhccCcccccceeccHHH
Confidence 1112111 13567777877543
No 238
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.13 E-value=7.8e-09 Score=93.64 Aligned_cols=267 Identities=15% Similarity=0.161 Sum_probs=159.4
Q ss_pred CCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCC-C-cEEEE-ecCCeEEEEeCCCCCCceeeeee-cCCeeEEEEe
Q 013871 24 QEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSD-E-AVACR-MATNEIQFFDTTDFPKGILYRLR-VPGVAAFEVS 99 (434)
Q Consensus 24 ~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d-~-~~la~-~~~~~i~v~~~~~~~~~~~~~~~-~~~v~~~~~s 99 (434)
..+.|+|||..+|+.+..|.... .....++|..+ + ..+.+ +.||+|++||+............ .++-..+.+.
T Consensus 48 Sngsv~lyd~~tg~~l~~fk~~~---~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld 124 (376)
T KOG1188|consen 48 SNGSVRLYDKGTGQLLEEFKGPP---ATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLD 124 (376)
T ss_pred cCCeEEEEeccchhhhheecCCC---CcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEee
Confidence 46899999999999999998765 33446677664 2 33333 47889999999775543222222 1112222333
Q ss_pred CC-CCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeee-eecccceeEEEECCCCCeEEEEEEecccccCceeecceeE
Q 013871 100 KA-PGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARR-SFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKL 177 (434)
Q Consensus 100 p~-~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~-~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l 177 (434)
-+ .+..+++- .+..+..+.|.+|++... .+.+.+. .-|..++++++|.|....+++..+.| |-.+|
T Consensus 125 ~nck~~ii~~G-tE~~~s~A~v~lwDvR~~--qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvD---------GLvnl 192 (376)
T KOG1188|consen 125 LNCKKNIIACG-TELTRSDASVVLWDVRSE--QQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVD---------GLVNL 192 (376)
T ss_pred ccCcCCeEEec-cccccCceEEEEEEeccc--cchhhhhhhhccCcceeEEecCCCCCeEEeeccc---------ceEEe
Confidence 22 23445443 344567789999999873 3335443 45788999999999998887765543 44445
Q ss_pred EEEeeCCcceeee-ecCCCCCeEEEEECcCC--CEEEEEEccCCCeEEEEecc-cceeEEeCCcCe---------eE---
Q 013871 178 NYLTTDGTHEGLV-PLRKEGPVHDVQWSYSG--SEFAVVYGFMPASATIFNKK-CRPILELGSGPY---------NT--- 241 (434)
Q Consensus 178 ~~l~~~~~~~~~v-~l~~~~~i~~v~wspdg--~~~av~~g~~~~~v~l~d~~-~~~~~~~~~~~~---------~~--- 241 (434)
+.+......+..+ .+.....|+.+.|..++ +.+++ . ......+|+++ +.+...+....+ ++
T Consensus 193 fD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~cl--T-H~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~ 269 (376)
T KOG1188|consen 193 FDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCL--T-HMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYV 269 (376)
T ss_pred eecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEE--E-ccCceeEEEccCCChhhcccCccchhhhHHhhhhhhhe
Confidence 5544333222222 22345679999999988 54443 2 24588899874 222222211100 00
Q ss_pred E-EECC-CCCeEEEEecCCCCCeEEEE-EccCC---EEEEEeeCC--C-ceEEEECCCCCEEEEEEcCCceeeCCcEEEE
Q 013871 242 V-RWNP-KGKFLCLAGFGNLPGDMAFW-DYVDG---KQLGTTRAE--C-SVTSEWSPDGRYFMTATTAPRLQIDNGIKIF 312 (434)
Q Consensus 242 i-~~SP-~g~~l~~~~~~~~~g~i~iw-d~~~~---~~i~~~~~~--~-~~~~~wspdg~~l~tas~~prl~~D~~i~iw 312 (434)
| ..+| ++..+++++.+...|.+... |..++ ..+..++++ . +..+.|.-.+.++.||+. |+.+++|
T Consensus 270 I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGE------DG~l~~W 343 (376)
T KOG1188|consen 270 INEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGE------DGLLQAW 343 (376)
T ss_pred eecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCC------CceEEEE
Confidence 1 2334 44566666643322333332 33333 345555553 2 233888889999999999 9999999
Q ss_pred ee
Q 013871 313 HH 314 (434)
Q Consensus 313 ~~ 314 (434)
..
T Consensus 344 k~ 345 (376)
T KOG1188|consen 344 KV 345 (376)
T ss_pred ec
Confidence 97
No 239
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.11 E-value=2e-10 Score=111.23 Aligned_cols=108 Identities=20% Similarity=0.454 Sum_probs=87.2
Q ss_pred CCCeEEEEECc-CCCEEEEEEccCCCeEEEEeccc----------ceeEEeCCcCeeEEEECCCC-CeEEEEecCCCCCe
Q 013871 195 EGPVHDVQWSY-SGSEFAVVYGFMPASATIFNKKC----------RPILELGSGPYNTVRWNPKG-KFLCLAGFGNLPGD 262 (434)
Q Consensus 195 ~~~i~~v~wsp-dg~~~av~~g~~~~~v~l~d~~~----------~~~~~~~~~~~~~i~~SP~g-~~l~~~~~~~~~g~ 262 (434)
..-|.+++|.| |..++|| +..++.|.||.+.. +.+...|...|.++.|+|-. ..|++++++ -+
T Consensus 627 gt~vtDl~WdPFD~~rLAV--a~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd---~T 701 (1012)
T KOG1445|consen 627 GTLVTDLHWDPFDDERLAV--ATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYD---ST 701 (1012)
T ss_pred CceeeecccCCCChHHeee--cccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhcc---ce
Confidence 34578999999 7778886 56789999997642 23455688999999999965 478888855 49
Q ss_pred EEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEe
Q 013871 263 MAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFH 313 (434)
Q Consensus 263 i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~ 313 (434)
|++||+.+++....+.+| .+..++|||||+.++|.+. |+.|++|.
T Consensus 702 i~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcK------Dg~~rVy~ 748 (1012)
T KOG1445|consen 702 IELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCK------DGTLRVYE 748 (1012)
T ss_pred eeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeec------CceEEEeC
Confidence 999999999988888887 6667999999999999999 55555554
No 240
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.11 E-value=9.4e-09 Score=92.41 Aligned_cols=230 Identities=11% Similarity=0.135 Sum_probs=143.8
Q ss_pred CCCCeeeecCCCcEEEEecC-CeEEEEeCCCCC---CceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEc
Q 013871 50 TTWPSIRFSSDEAVACRMAT-NEIQFFDTTDFP---KGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYAC 125 (434)
Q Consensus 50 ~~~~~~~~S~d~~~la~~~~-~~i~v~~~~~~~---~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~ 125 (434)
+.+.|.+|++|...+|.+-+ ++|+||...... .......|...|+.+.|+|..+.++.+ +.+..-.+|..
T Consensus 11 ~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtc------s~drnayVw~~ 84 (361)
T KOG1523|consen 11 EPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTC------SHDRNAYVWTQ 84 (361)
T ss_pred CceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEc------cCCCCcccccc
Confidence 56679999999999998855 599999986644 223344455678999999986565543 45555678887
Q ss_pred CCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECc
Q 013871 126 GKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSY 205 (434)
Q Consensus 126 ~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wsp 205 (434)
+....=.+...+--++.....+.|+|.++.+++.... .-.+.--|.+++. |-+ .+.+.......|.+++|+|
T Consensus 85 ~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSga-r~isVcy~E~ENd-WWV------sKhikkPirStv~sldWhp 156 (361)
T KOG1523|consen 85 PSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGA-RLISVCYYEQEND-WWV------SKHIKKPIRSTVTSLDWHP 156 (361)
T ss_pred CCCCeeccceeEEEeccceeeEeecCcCceEEeccCc-cEEEEEEEecccc-eeh------hhhhCCccccceeeeeccC
Confidence 5432222333333455567799999999987664211 1111111112222 111 1111112257889999999
Q ss_pred CCCEEEEEEccCCCeEEEEec-----cc--------------ceeEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEE
Q 013871 206 SGSEFAVVYGFMPASATIFNK-----KC--------------RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMA 264 (434)
Q Consensus 206 dg~~~av~~g~~~~~v~l~d~-----~~--------------~~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~ 264 (434)
++-.++ .|+.|++.++|.. +. ..+.++ ..+-+..+.|||+|..|+..+.+ +.+.
T Consensus 157 nnVLla--aGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hd---s~v~ 231 (361)
T KOG1523|consen 157 NNVLLA--AGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHD---STVS 231 (361)
T ss_pred Ccceec--ccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCC---CceE
Confidence 998777 6888999999853 11 112223 45678899999999999999944 5999
Q ss_pred EEEccCCE-EEEEee-C-CCceEEEECCCCCEEEEEEc
Q 013871 265 FWDYVDGK-QLGTTR-A-ECSVTSEWSPDGRYFMTATT 299 (434)
Q Consensus 265 iwd~~~~~-~i~~~~-~-~~~~~~~wspdg~~l~tas~ 299 (434)
+-|..... .+.... . -....+.|-.+.. ++.|+.
T Consensus 232 ~~da~~p~~~v~~~~~~~lP~ls~~~ise~~-vv~ag~ 268 (361)
T KOG1523|consen 232 FVDAAGPSERVQSVATAQLPLLSVSWISENS-VVAAGY 268 (361)
T ss_pred EeecCCCchhccchhhccCCceeeEeecCCc-eeecCC
Confidence 99976553 222222 1 2334467766544 444444
No 241
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=99.10 E-value=3.8e-08 Score=96.46 Aligned_cols=190 Identities=15% Similarity=0.235 Sum_probs=125.3
Q ss_pred CCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCce
Q 013871 91 PGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQS 170 (434)
Q Consensus 91 ~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~ 170 (434)
..+..-.|+|+ ...++++.-+.+ .+..+.++++.. ++.....+ +........|+|||+.|++....+
T Consensus 193 ~~~~~p~ws~~-~~~~~y~~f~~~-~~~~i~~~~l~~---g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rd------- 259 (425)
T COG0823 193 SLILTPAWSPD-GKKLAYVSFELG-GCPRIYYLDLNT---GKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRD------- 259 (425)
T ss_pred cceeccccCcC-CCceEEEEEecC-CCceEEEEeccC---Cccceeec-cCCccCCccCCCCCCEEEEEECCC-------
Confidence 34667789998 455554433322 226788888876 33333333 444556789999999998875433
Q ss_pred eecceeEEEEeeCCcceeeeecCC-CCCeEEEEECcCCCEEEEEEccCCC--eEEEEecccceeEEe--CCcCeeEEEEC
Q 013871 171 YYGESKLNYLTTDGTHEGLVPLRK-EGPVHDVQWSYSGSEFAVVYGFMPA--SATIFNKKCRPILEL--GSGPYNTVRWN 245 (434)
Q Consensus 171 ~~g~~~l~~l~~~~~~~~~v~l~~-~~~i~~v~wspdg~~~av~~g~~~~--~v~l~d~~~~~~~~~--~~~~~~~i~~S 245 (434)
|...||.++..+..... |.. .+.-..-.|+|||+.+++++.. .+ .|.++|..+.....+ ..+....-.||
T Consensus 260 --g~~~iy~~dl~~~~~~~--Lt~~~gi~~~Ps~spdG~~ivf~Sdr-~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~S 334 (425)
T COG0823 260 --GSPDIYLMDLDGKNLPR--LTNGFGINTSPSWSPDGSKIVFTSDR-GGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWS 334 (425)
T ss_pred --CCccEEEEcCCCCccee--cccCCccccCccCCCCCCEEEEEeCC-CCCcceEEECCCCCceeEeeccCCCCcCccCC
Confidence 44568888887765333 322 3444478999999999987543 33 788888877655443 33444478999
Q ss_pred CCCCeEEEEecCCCCCe--EEEEEccCCEEEEEeeCCCc-eEEEECCCCCEEEEEEcC
Q 013871 246 PKGKFLCLAGFGNLPGD--MAFWDYVDGKQLGTTRAECS-VTSEWSPDGRYFMTATTA 300 (434)
Q Consensus 246 P~g~~l~~~~~~~~~g~--i~iwd~~~~~~i~~~~~~~~-~~~~wspdg~~l~tas~~ 300 (434)
|||++|+..+.. .|. |.+.|+.++..+..+..... ....|+|+|+.|+..+..
T Consensus 335 pdG~~i~~~~~~--~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~~s~~ 390 (425)
T COG0823 335 PDGDKIVFESSS--GGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIMFSSGQ 390 (425)
T ss_pred CCCCEEEEEecc--CCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEEEeccC
Confidence 999999998732 344 77778776654444444322 237999999999998873
No 242
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.08 E-value=3.3e-08 Score=101.40 Aligned_cols=284 Identities=12% Similarity=0.121 Sum_probs=166.1
Q ss_pred ceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecC--CCcEEEEe-cCCeEEEEeCCC
Q 013871 3 LLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSS--DEAVACRM-ATNEIQFFDTTD 79 (434)
Q Consensus 3 ~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~--d~~~la~~-~~~~i~v~~~~~ 79 (434)
..+.|+|-...|++.. +...|+|||.+.++.+..|.....-...|..+.+=. |..++.++ .||.|+||+.-.
T Consensus 1068 k~~~~hpf~p~i~~ad-----~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~ 1142 (1387)
T KOG1517|consen 1068 KTLKFHPFEPQIAAAD-----DRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYA 1142 (1387)
T ss_pred ceeeecCCCceeEEcC-----CcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccc
Confidence 3567888888888866 456899999999999988876644335565666532 44555555 678999998643
Q ss_pred CC-CceeeeeecCCeeEEEEeCCCCCeEEEEecCC-----CCCCceEEEEEcCCCCCCCceeeeeecc-cceeEEEEC-C
Q 013871 80 FP-KGILYRLRVPGVAAFEVSKAPGSHVAVFVPES-----KGSPASVQIYACGKDLQSQPLARRSFFR-CSTVQLNWN-R 151 (434)
Q Consensus 80 ~~-~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~-----~~~~~~v~i~~~~~~~~~~~i~~~~~~~-~~~~~~~ws-~ 151 (434)
.. ..........++.+....+.+...+.-|.-.+ .|....|+|||... ...+....+.. .-++.+.-+ .
T Consensus 1143 ~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~---E~~~~diP~~s~t~vTaLS~~~~ 1219 (1387)
T KOG1517|consen 1143 DKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHK---EQVVADIPYGSSTLVTALSADLV 1219 (1387)
T ss_pred cccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEeccc---ceeEeecccCCCccceeeccccc
Confidence 21 11111111122222222222222222221111 24567899999965 34343333221 111222221 1
Q ss_pred CCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecC--C--CCCeEEEEECcCCCEEEEEEccCCCeEEEEecc
Q 013871 152 GSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR--K--EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK 227 (434)
Q Consensus 152 ~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~--~--~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~ 227 (434)
.|+.++.. -.|.+.+ +|....... ++.+..- + ..+|..+.+.+.|-. -+++|+.+|.|.+||++
T Consensus 1220 ~gn~i~AG---faDGsvR-------vyD~R~a~~-ds~v~~~R~h~~~~~Iv~~slq~~G~~-elvSgs~~G~I~~~DlR 1287 (1387)
T KOG1517|consen 1220 HGNIIAAG---FADGSVR-------VYDRRMAPP-DSLVCVYREHNDVEPIVHLSLQRQGLG-ELVSGSQDGDIQLLDLR 1287 (1387)
T ss_pred CCceEEEe---ecCCceE-------EeecccCCc-cccceeecccCCcccceeEEeecCCCc-ceeeeccCCeEEEEecc
Confidence 24444332 1344444 444332222 2222221 2 234888888887744 23379999999999998
Q ss_pred cceeEEe-----C--Cc-CeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEee------C---CCceEEEECCC
Q 013871 228 CRPILEL-----G--SG-PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTR------A---ECSVTSEWSPD 290 (434)
Q Consensus 228 ~~~~~~~-----~--~~-~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~------~---~~~~~~~wspd 290 (434)
......+ + -+ ..+++..+++...+|+|+. +.|.||++... .+..+. + ..+++++|+|-
T Consensus 1288 ~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~----q~ikIy~~~G~-~l~~~k~n~~F~~q~~gs~scL~FHP~ 1362 (1387)
T KOG1517|consen 1288 MSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA----QLIKIYSLSGE-QLNIIKYNPGFMGQRIGSVSCLAFHPH 1362 (1387)
T ss_pred cCcccccceeeeccccCccceeeeeccCCCeeeecCc----ceEEEEecChh-hhcccccCcccccCcCCCcceeeecch
Confidence 7432221 1 14 4899999999999999873 58999998643 222221 1 25577999999
Q ss_pred CCEEEEEEcCCceeeCCcEEEEeecCc
Q 013871 291 GRYFMTATTAPRLQIDNGIKIFHHNGS 317 (434)
Q Consensus 291 g~~l~tas~~prl~~D~~i~iw~~~g~ 317 (434)
--.+++|.. |+.|.||..+..
T Consensus 1363 ~~llAaG~~------Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1363 RLLLAAGSA------DSTVSIYSCEKP 1383 (1387)
T ss_pred hHhhhhccC------CceEEEeecCCc
Confidence 888888877 999999987543
No 243
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.05 E-value=5e-09 Score=94.13 Aligned_cols=154 Identities=16% Similarity=0.287 Sum_probs=111.6
Q ss_pred eecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcc--eeeeec-CCCCCeEEEEECcCCCEEEEEE
Q 013871 138 SFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH--EGLVPL-RKEGPVHDVQWSYSGSEFAVVY 214 (434)
Q Consensus 138 ~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~--~~~v~l-~~~~~i~~v~wspdg~~~av~~ 214 (434)
.+....+++.+||+|++.+++...+ ..++..+..+.. +..-++ ++...|..++|+|.+++++ +
T Consensus 7 ~~~~~pitchAwn~drt~iAv~~~~------------~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIv--t 72 (361)
T KOG1523|consen 7 HRLLEPITCHAWNSDRTQIAVSPNN------------HEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIV--T 72 (361)
T ss_pred eeccCceeeeeecCCCceEEeccCC------------ceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCcee--E
Confidence 3355678899999999998876432 123333333321 222223 2578999999999999998 6
Q ss_pred ccCCCeEEEEec-c---cceeEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC------EEEEEeeCCCc
Q 013871 215 GFMPASATIFNK-K---CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG------KQLGTTRAECS 282 (434)
Q Consensus 215 g~~~~~v~l~d~-~---~~~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~------~~i~~~~~~~~ 282 (434)
+..|...++|.. + -.+...+ +....+++.|+|.++.+++|+... .|.||-.+.. +.|..--...+
T Consensus 73 cs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar---~isVcy~E~ENdWWVsKhikkPirStv 149 (361)
T KOG1523|consen 73 CSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGAR---LISVCYYEQENDWWVSKHIKKPIRSTV 149 (361)
T ss_pred ccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCcc---EEEEEEEecccceehhhhhCCccccce
Confidence 888999999977 3 2333333 678889999999999999998554 8888877643 22333333466
Q ss_pred eEEEECCCCCEEEEEEcCCceeeCCcEEEEee
Q 013871 283 VTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH 314 (434)
Q Consensus 283 ~~~~wspdg~~l~tas~~prl~~D~~i~iw~~ 314 (434)
++++|+|.+-.|+++++ |+..||+..
T Consensus 150 ~sldWhpnnVLlaaGs~------D~k~rVfSa 175 (361)
T KOG1523|consen 150 TSLDWHPNNVLLAAGST------DGKCRVFSA 175 (361)
T ss_pred eeeeccCCcceeccccc------CcceeEEEE
Confidence 77999999999999999 999999975
No 244
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.02 E-value=2.1e-07 Score=85.37 Aligned_cols=252 Identities=13% Similarity=0.093 Sum_probs=144.2
Q ss_pred CcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCCCceeeeeecCCee-EEEEeCCC-C
Q 013871 26 KNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPKGILYRLRVPGVA-AFEVSKAP-G 103 (434)
Q Consensus 26 ~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~v~-~~~~sp~~-~ 103 (434)
+.++|.+...+..++.+... ..+.++.++ -+.|+.+-...|.|||+.++..........++.. -+++||+. +
T Consensus 68 r~Lkv~~~Kk~~~ICe~~fp----t~IL~VrmN--r~RLvV~Lee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n 141 (391)
T KOG2110|consen 68 RKLKVVHFKKKTTICEIFFP----TSILAVRMN--RKRLVVCLEESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNAN 141 (391)
T ss_pred ceEEEEEcccCceEEEEecC----CceEEEEEc--cceEEEEEcccEEEEecccceeehhhhccCCCccceEeeccCCCC
Confidence 56888888888877776654 344466664 4455555556699999998765433333222222 34555553 3
Q ss_pred CeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeC
Q 013871 104 SHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTD 183 (434)
Q Consensus 104 ~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~ 183 (434)
.++|+ |++ ...+.|.||++.+ -+++..+..|+....+++++++|+.|+.. ++....++.+ .+.
T Consensus 142 ~ylAy--p~s-~t~GdV~l~d~~n---l~~v~~I~aH~~~lAalafs~~G~llATA--SeKGTVIRVf---------~v~ 204 (391)
T KOG2110|consen 142 CYLAY--PGS-TTSGDVVLFDTIN---LQPVNTINAHKGPLAALAFSPDGTLLATA--SEKGTVIRVF---------SVP 204 (391)
T ss_pred ceEEe--cCC-CCCceEEEEEccc---ceeeeEEEecCCceeEEEECCCCCEEEEe--ccCceEEEEE---------EcC
Confidence 45553 332 3478999999998 78899999999999999999999986542 2221222222 111
Q ss_pred CcceeeeecCC---CCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeEEeCCcCeeEEEECCCC-CeEEEEecCCC
Q 013871 184 GTHEGLVPLRK---EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSGPYNTVRWNPKG-KFLCLAGFGNL 259 (434)
Q Consensus 184 ~~~~~~v~l~~---~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~~~~~~~~~i~~SP~g-~~l~~~~~~~~ 259 (434)
.+ +....+.. ...|++++|+||+.++++ .+...+|.+|-++........ .+ -.|.+-. .+.-.+.. -+
T Consensus 205 ~G-~kl~eFRRG~~~~~IySL~Fs~ds~~L~~--sS~TeTVHiFKL~~~~~~~~~-~p---~~~~~~~~~~sk~~~s-yl 276 (391)
T KOG2110|consen 205 EG-QKLYEFRRGTYPVSIYSLSFSPDSQFLAA--SSNTETVHIFKLEKVSNNPPE-SP---TAGTSWFGKVSKAATS-YL 276 (391)
T ss_pred Cc-cEeeeeeCCceeeEEEEEEECCCCCeEEE--ecCCCeEEEEEecccccCCCC-CC---CCCCcccchhhhhhhh-hc
Confidence 11 12222211 346899999999998885 344569999987644311111 00 0111100 00000000 01
Q ss_pred C-CeEEEEEccCCEEEEEeeCCCc-eEEEEC--CCCCEEEEEEcCCceeeCCcEEEEee
Q 013871 260 P-GDMAFWDYVDGKQLGTTRAECS-VTSEWS--PDGRYFMTATTAPRLQIDNGIKIFHH 314 (434)
Q Consensus 260 ~-g~i~iwd~~~~~~i~~~~~~~~-~~~~ws--pdg~~l~tas~~prl~~D~~i~iw~~ 314 (434)
. ..-.+||....--...+..... ..+.++ +...++..|+. ||.+.++.+
T Consensus 277 ps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~vas~------dG~~y~y~l 329 (391)
T KOG2110|consen 277 PSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVLVASY------DGHLYSYRL 329 (391)
T ss_pred chhhhhhhhhccceeEEEccCCCccceEEeeccCCCCEEEEEEc------CCeEEEEEc
Confidence 1 1223355443211222222222 235555 57889999999 999999998
No 245
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.02 E-value=5.4e-07 Score=80.52 Aligned_cols=71 Identities=14% Similarity=0.237 Sum_probs=52.4
Q ss_pred ceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCC--cEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCC
Q 013871 3 LLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETG--EAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTD 79 (434)
Q Consensus 3 ~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g--~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~ 79 (434)
+.++.+.||+.||..+ |..|-|=...+. ..+....-.+...-.|+.++||||+.+||.+ +.++|+|||+..
T Consensus 1 W~~~~~~~Gk~lAi~q------d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g 74 (282)
T PF15492_consen 1 WHLALSSDGKLLAILQ------DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG 74 (282)
T ss_pred CceeecCCCcEEEEEe------ccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc
Confidence 3578899999999877 566777665443 3344444333233679999999999999999 568999999865
No 246
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.01 E-value=2.9e-07 Score=86.99 Aligned_cols=133 Identities=11% Similarity=0.166 Sum_probs=95.2
Q ss_pred cEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCC-eEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCe
Q 013871 27 NVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATN-EIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSH 105 (434)
Q Consensus 27 ~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ 105 (434)
.|-|+|..+|+. ..+.. .. ..+-++.-++||++++.+.++ +|.++|+++......-+-...-|..+.|||+ ...
T Consensus 383 ~l~iyd~~~~e~-kr~e~-~l--g~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~n-sr~ 457 (668)
T COG4946 383 KLGIYDKDGGEV-KRIEK-DL--GNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPN-SRW 457 (668)
T ss_pred eEEEEecCCceE-EEeeC-Cc--cceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCC-cee
Confidence 688999887764 33322 11 556689999999999988765 9999999886643333444556999999998 678
Q ss_pred EEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCc
Q 013871 106 VAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQ 169 (434)
Q Consensus 106 ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~ 169 (434)
+|+..|+. --...|++|++.. ..+...+...+...+-+|.|+|++|.++.....|.+..
T Consensus 458 iAYafP~g-y~tq~Iklydm~~----~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs~RsLdPs~D 516 (668)
T COG4946 458 IAYAFPEG-YYTQSIKLYDMDG----GKIYDVTTPTAYDFSPAFDPDGRYLYFLSARSLDPSND 516 (668)
T ss_pred EEEecCcc-eeeeeEEEEecCC----CeEEEecCCcccccCcccCCCCcEEEEEeccccCCCCC
Confidence 88877743 3345789999875 33444444555667788999999999887666555443
No 247
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.00 E-value=3.6e-08 Score=86.46 Aligned_cols=262 Identities=14% Similarity=0.153 Sum_probs=159.9
Q ss_pred CCCCeeeecCCCcEEEEecCCeEEEEeCCCCCCceeee-eecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCC
Q 013871 50 TTWPSIRFSSDEAVACRMATNEIQFFDTTDFPKGILYR-LRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKD 128 (434)
Q Consensus 50 ~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~ 128 (434)
..+.++.|-.+++++.....|.|++|.+.........+ .+...|..+..-|+ +..+ +.|.+..+.+|++.-
T Consensus 15 ~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~------tqgRd~~L~lw~ia~- 86 (323)
T KOG0322|consen 15 SSVTSVLFQANERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLD------TQGRDPLLILWTIAY- 86 (323)
T ss_pred chheehhhccchhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchh------hcCCCceEEEEEccC-
Confidence 66778889888886666677999999998755434444 22334666666664 2111 245666777787764
Q ss_pred CCCCceeeee--ecccceeEEEECCCCCeE---EEEEEecccccCceeecceeEEEEeeCCcceeeee------cCCCCC
Q 013871 129 LQSQPLARRS--FFRCSTVQLNWNRGSTGL---LAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVP------LRKEGP 197 (434)
Q Consensus 129 ~~~~~i~~~~--~~~~~~~~~~ws~~G~~l---~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~------l~~~~~ 197 (434)
..-+...+ .....-|.+...+.++.. +..-+...| .++..+ +.....+. ..+.|.
T Consensus 87 --s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsd----------e~h~~D--~g~~tqv~i~dd~~~~Klgs 152 (323)
T KOG0322|consen 87 --SAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSD----------ETHKQD--GGDTTQVQIADDSERSKLGS 152 (323)
T ss_pred --cceEEEeeeeccccccccceeccCCCcchhheecCCcccc----------hhhhhc--cCccceeEccCchhccccCc
Confidence 22222221 112222344444444422 111111011 112121 11111221 224567
Q ss_pred eEEEEECc-CCCEEEEEEccCCCeEEEEecccc-eeEEe------------CCcCeeEEEECCCCCeEEEEecCCCCCeE
Q 013871 198 VHDVQWSY-SGSEFAVVYGFMPASATIFNKKCR-PILEL------------GSGPYNTVRWNPKGKFLCLAGFGNLPGDM 263 (434)
Q Consensus 198 i~~v~wsp-dg~~~av~~g~~~~~v~l~d~~~~-~~~~~------------~~~~~~~i~~SP~g~~l~~~~~~~~~g~i 263 (434)
+.+..|.- ++++|.++.|++++.+.+||+..+ .+.+| |.+++.++.|.+.-..=+.++.+ -.+
T Consensus 153 vmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~---dkl 229 (323)
T KOG0322|consen 153 VMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGAD---DKL 229 (323)
T ss_pred eeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCcc---ccc
Confidence 77766543 577888889999999999999653 22222 67889999998754444445533 377
Q ss_pred EEEEccC--C----EEEEEeeCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec-Ccee--eeeecccceeeEEEc
Q 013871 264 AFWDYVD--G----KQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLF--FKKMFDKLFQAEWKP 334 (434)
Q Consensus 264 ~iwd~~~--~----~~i~~~~~~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~-g~~~--~~~~~~~~~~~~w~p 334 (434)
..|.++. + ....+++.+++..+..-||++.++||+- |+.||||++. .+.+ .+.+...+..++|+|
T Consensus 230 ~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGW------D~RiRVyswrtl~pLAVLkyHsagvn~vAfsp 303 (323)
T KOG0322|consen 230 VMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGW------DHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSP 303 (323)
T ss_pred eeeeeccccCcccccceEEecCCCccceEEccCCcEEeeccc------CCcEEEEEeccCCchhhhhhhhcceeEEEeCC
Confidence 7777653 3 2234556678888999999999999999 9999999994 4444 445668899999999
Q ss_pred CCCCCCCC
Q 013871 335 VSPDKFGD 342 (434)
Q Consensus 335 ~~~~~~~~ 342 (434)
+.+-+..+
T Consensus 304 d~~lmAaa 311 (323)
T KOG0322|consen 304 DCELMAAA 311 (323)
T ss_pred CCchhhhc
Confidence 96555444
No 248
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.99 E-value=3.6e-09 Score=101.15 Aligned_cols=114 Identities=11% Similarity=0.176 Sum_probs=84.0
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecC--CCcEEEEe-cCCeEEEEeCC
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSS--DEAVACRM-ATNEIQFFDTT 78 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~--d~~~la~~-~~~~i~v~~~~ 78 (434)
|.||.|+.||.+|++++ .|..+.|||....+.++.+..+ |...+-++.|-| ++++++++ +|..|++||+.
T Consensus 53 VN~LeWn~dG~lL~SGS-----DD~r~ivWd~~~~KllhsI~Tg--HtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~ 125 (758)
T KOG1310|consen 53 VNCLEWNADGELLASGS-----DDTRLIVWDPFEYKLLHSISTG--HTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLD 125 (758)
T ss_pred ecceeecCCCCEEeecC-----CcceEEeecchhcceeeeeecc--cccceeEEeeeccCCCeEEEeccCcceEEEEecc
Confidence 78999999999999988 8999999999988888887665 447777999988 55677777 56799999997
Q ss_pred CCCC----------ceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCC
Q 013871 79 DFPK----------GILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGK 127 (434)
Q Consensus 79 ~~~~----------~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~ 127 (434)
.... .....-|...|+.++..|++ +.+ +|. .+.+|.++-|++..
T Consensus 126 ~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~-Pht-fws---asEDGtirQyDiRE 179 (758)
T KOG1310|consen 126 SSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNG-PHT-FWS---ASEDGTIRQYDIRE 179 (758)
T ss_pred cccccccccCccchhhhhhhhhhhhhheecCCCC-Cce-EEE---ecCCcceeeecccC
Confidence 5211 11123345678888888874 332 222 35667888888854
No 249
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.96 E-value=1.9e-06 Score=79.33 Aligned_cols=253 Identities=17% Similarity=0.250 Sum_probs=147.8
Q ss_pred CCeEEEEeCCCCCCc---eeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCC-CCceeeeeecccce
Q 013871 69 TNEIQFFDTTDFPKG---ILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQ-SQPLARRSFFRCST 144 (434)
Q Consensus 69 ~~~i~v~~~~~~~~~---~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~-~~~i~~~~~~~~~~ 144 (434)
+..|++|++...... ...-....+.+-++|+|+.....++-.+ +..+.|-.|.+...+. -..+.........-
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~---~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p 91 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEP---GEEGGVAAYRIDPDDGRLTFLNRQTLPGSPP 91 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEec---CCcCcEEEEEEcCCCCeEEEeeccccCCCCC
Confidence 468999998742211 1112235577888999984333333322 3356677777764210 11222222333444
Q ss_pred eEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeee-cCCCCC----------eEEEEECcCCCEEEEE
Q 013871 145 VQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVP-LRKEGP----------VHDVQWSYSGSEFAVV 213 (434)
Q Consensus 145 ~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~-l~~~~~----------i~~v~wspdg~~~av~ 213 (434)
+.++.+++|++|++.. -. .|...++-+..+|.-...+. +.+.++ +|...+.|++++++++
T Consensus 92 ~yvsvd~~g~~vf~An-Y~--------~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~ 162 (346)
T COG2706 92 CYVSVDEDGRFVFVAN-YH--------SGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVP 162 (346)
T ss_pred eEEEECCCCCEEEEEE-cc--------CceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEe
Confidence 8899999999876531 10 12223444433332222211 112233 8999999999999986
Q ss_pred EccCCCeEEEEecccceeEE-----e--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC----EEEEEee---C
Q 013871 214 YGFMPASATIFNKKCRPILE-----L--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG----KQLGTTR---A 279 (434)
Q Consensus 214 ~g~~~~~v~l~d~~~~~~~~-----~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~----~~i~~~~---~ 279 (434)
.=..| +|.+|++....+.. + +.++ .-|.|+|+|++..+..- ++++|.+|..+.. +.+..+. .
T Consensus 163 DLG~D-ri~~y~~~dg~L~~~~~~~v~~G~GP-RHi~FHpn~k~aY~v~E--L~stV~v~~y~~~~g~~~~lQ~i~tlP~ 238 (346)
T COG2706 163 DLGTD-RIFLYDLDDGKLTPADPAEVKPGAGP-RHIVFHPNGKYAYLVNE--LNSTVDVLEYNPAVGKFEELQTIDTLPE 238 (346)
T ss_pred ecCCc-eEEEEEcccCccccccccccCCCCCc-ceEEEcCCCcEEEEEec--cCCEEEEEEEcCCCceEEEeeeeccCcc
Confidence 44333 99999986333221 1 2333 56999999998877652 6789999998863 2333221 1
Q ss_pred ----C-CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec---Cceeeeee--cc--cceeeEEEcCCCCCCCC
Q 013871 280 ----E-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN---GSLFFKKM--FD--KLFQAEWKPVSPDKFGD 342 (434)
Q Consensus 280 ----~-~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~---g~~~~~~~--~~--~~~~~~w~p~~~~~~~~ 342 (434)
. ....+..+|||+||.++--. .+.|-+|+++ |++-.... .+ .-..+.+.|.+..|+..
T Consensus 239 dF~g~~~~aaIhis~dGrFLYasNRg-----~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa 308 (346)
T COG2706 239 DFTGTNWAAAIHISPDGRFLYASNRG-----HDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAA 308 (346)
T ss_pred ccCCCCceeEEEECCCCCEEEEecCC-----CCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEE
Confidence 1 34459999999999887643 6788899883 44433321 11 13456667777666655
No 250
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=98.94 E-value=4.4e-08 Score=88.84 Aligned_cols=240 Identities=12% Similarity=0.114 Sum_probs=144.3
Q ss_pred ceEEecC--CCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-----CCeEEEE
Q 013871 3 LLLTCLR--VGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-----TNEIQFF 75 (434)
Q Consensus 3 ~~l~fSP--~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-----~~~i~v~ 75 (434)
..+.|.- .+.-+.+++ .|+.|++||+.+......+...++......+++-...++.++++. +-.|.+|
T Consensus 74 N~vrf~~~ds~h~v~s~s-----sDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lw 148 (376)
T KOG1188|consen 74 NGVRFISCDSPHGVISCS-----SDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLW 148 (376)
T ss_pred cceEEecCCCCCeeEEec-----cCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEE
Confidence 3455544 234455555 789999999987766554444433223444666566788888873 2389999
Q ss_pred eCCCCCC--ceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCC
Q 013871 76 DTTDFPK--GILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGS 153 (434)
Q Consensus 76 ~~~~~~~--~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G 153 (434)
|+..... .....-|.+.|+.+.|+|....+++ ++..+|-|.||++........+.+.-.+...+..+.|..++
T Consensus 149 DvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLl-----SGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ 223 (376)
T KOG1188|consen 149 DVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLL-----SGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKK 223 (376)
T ss_pred EeccccchhhhhhhhccCcceeEEecCCCCCeEE-----eecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCC
Confidence 9977543 1223456788999999999666665 46778999999997654344444444455667889999888
Q ss_pred -CeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCC-----------CCeEEE-EECcCCCEEEEEEccCCCe
Q 013871 154 -TGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKE-----------GPVHDV-QWSYSGSEFAVVYGFMPAS 220 (434)
Q Consensus 154 -~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~-----------~~i~~v-~wspdg~~~av~~g~~~~~ 220 (434)
+.|.+++..+ +- .+|.++ .+ .....++.. ..-+-| ..+|.+.-+..+.|..-++
T Consensus 224 ykrI~clTH~E---tf-------~~~ele--~~-~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~ 290 (376)
T KOG1188|consen 224 YKRIMCLTHME---TF-------AIYELE--DG-SEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNK 290 (376)
T ss_pred cceEEEEEccC---ce-------eEEEcc--CC-ChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCc
Confidence 3466655332 11 123332 22 122222110 000111 1235444454445554556
Q ss_pred EEEEecc-------cceeEEe---CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEc
Q 013871 221 ATIFNKK-------CRPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDY 268 (434)
Q Consensus 221 v~l~d~~-------~~~~~~~---~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~ 268 (434)
..++-+. ...+..+ |..-+.++.|.-.+.++.+|| .+|.+.+|-.
T Consensus 291 ~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGG---EDG~l~~Wk~ 345 (376)
T KOG1188|consen 291 GTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGG---EDGLLQAWKV 345 (376)
T ss_pred eeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccC---CCceEEEEec
Confidence 6665332 1122233 344567888998899999999 8899999975
No 251
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.94 E-value=7.5e-06 Score=74.02 Aligned_cols=227 Identities=11% Similarity=0.175 Sum_probs=129.3
Q ss_pred eEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEE--EEEeecCcCCCCCCeeeecCCCcEEEEecC--------CeEE
Q 013871 4 LLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAV--YQLFQKNMTKTTWPSIRFSSDEAVACRMAT--------NEIQ 73 (434)
Q Consensus 4 ~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~--~~~~~~~~~~~~~~~~~~S~d~~~la~~~~--------~~i~ 73 (434)
.++|..|..=++.+. |.-.+||+.+--++. +.+.... ..+..+-| -.++||..++ |.|.
T Consensus 10 svs~NQD~ScFava~------~~Gfriyn~~P~ke~~~r~~~~~G---~~~veMLf--R~N~laLVGGg~~pky~pNkvi 78 (346)
T KOG2111|consen 10 SVSFNQDHSCFAVAT------DTGFRIYNCDPFKESASRQFIDGG---FKIVEMLF--RSNYLALVGGGSRPKYPPNKVI 78 (346)
T ss_pred EEEEccCCceEEEEe------cCceEEEecCchhhhhhhccccCc---hhhhhHhh--hhceEEEecCCCCCCCCCceEE
Confidence 466776666555444 556889987643221 1111111 11112222 3456665432 5899
Q ss_pred EEeCCCCCCceeeeee-cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCC
Q 013871 74 FFDTTDFPKGILYRLR-VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRG 152 (434)
Q Consensus 74 v~~~~~~~~~~~~~~~-~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~ 152 (434)
|||-.... ....+. ...|.++.++++ .|++.. +..|.+|..++. -+.++... ..-||.
T Consensus 79 IWDD~k~~--~i~el~f~~~I~~V~l~r~---riVvvl------~~~I~VytF~~n--~k~l~~~e--------t~~NPk 137 (346)
T KOG2111|consen 79 IWDDLKER--CIIELSFNSEIKAVKLRRD---RIVVVL------ENKIYVYTFPDN--PKLLHVIE--------TRSNPK 137 (346)
T ss_pred EEecccCc--EEEEEEeccceeeEEEcCC---eEEEEe------cCeEEEEEcCCC--hhheeeee--------cccCCC
Confidence 99943322 333333 235888888876 243332 357899998842 33333322 122455
Q ss_pred CCeEEEEEEecccccCcee----ecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCC-eEEEEecc
Q 013871 153 STGLLAVAQSDVDKTNQSY----YGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPA-SATIFNKK 227 (434)
Q Consensus 153 G~~l~~~~~~~~d~~~~~~----~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~-~v~l~d~~ 227 (434)
| |+.+... ..+..-.+ .|...|..+.........+--.|+..|.+++.+-+|..+| +++..| -|+|||..
T Consensus 138 G--lC~~~~~-~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vA--TaStkGTLIRIFdt~ 212 (346)
T KOG2111|consen 138 G--LCSLCPT-SNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVA--TASTKGTLIRIFDTE 212 (346)
T ss_pred c--eEeecCC-CCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEE--EeccCcEEEEEEEcC
Confidence 5 2222111 11111111 1333333332222111122334688999999999999999 566566 67999985
Q ss_pred -cceeEEeC----CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccC
Q 013871 228 -CRPILELG----SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD 270 (434)
Q Consensus 228 -~~~~~~~~----~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~ 270 (434)
+..+.++. ...+.+|+|||++.+||+++ ..|++.|+.++.
T Consensus 213 ~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsS---dKgTlHiF~l~~ 257 (346)
T KOG2111|consen 213 DGTLLQELRRGVDRADIYCIAFSPNSSWLAVSS---DKGTLHIFSLRD 257 (346)
T ss_pred CCcEeeeeecCCchheEEEEEeCCCccEEEEEc---CCCeEEEEEeec
Confidence 66777773 45688999999999999998 668999998764
No 252
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=98.93 E-value=1.7e-08 Score=95.34 Aligned_cols=289 Identities=15% Similarity=0.178 Sum_probs=170.3
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeee---cCCCcEEEEecCCeEEEEeCC
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRF---SSDEAVACRMATNEIQFFDTT 78 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~---S~d~~~la~~~~~~i~v~~~~ 78 (434)
|..|.|...|..|++.+ .|..|.+||...+..+..|... |...+-.-.| +.|...+.++.++++++=.+.
T Consensus 145 VntV~FN~~Gd~l~SgS-----DD~~vv~WdW~~~~~~l~f~SG--H~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~ 217 (559)
T KOG1334|consen 145 VNTVHFNQRGDVLASGS-----DDLQVVVWDWVSGSPKLSFESG--HCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEIL 217 (559)
T ss_pred cceeeecccCceeeccC-----ccceEEeehhhccCcccccccc--cccchhhhhccCCCCCcCceeccccCceeeeeec
Confidence 67889999999999988 8999999999999888777654 2233323334 445555555678888887765
Q ss_pred CCCCce-ee--eeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecc---cceeEEEECCC
Q 013871 79 DFPKGI-LY--RLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFR---CSTVQLNWNRG 152 (434)
Q Consensus 79 ~~~~~~-~~--~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~---~~~~~~~ws~~ 152 (434)
.-.... .. .-|...|..+++-|+....+. +.+.++.+.-+++....+......+.... .....+.-+|.
T Consensus 218 ~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~-----S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~ 292 (559)
T KOG1334|consen 218 ETGYVENTKRLAPHEGPVHKLAVEPDSPKPFL-----SCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPR 292 (559)
T ss_pred cccceecceecccccCccceeeecCCCCCccc-----ccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCC
Confidence 422111 11 122334666666666322221 34666777767765532212122222111 13345556666
Q ss_pred CCeEEEEEEecccccCceeecceeEEEEeeCCcceeee--ec--CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-
Q 013871 153 STGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLV--PL--RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK- 227 (434)
Q Consensus 153 G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v--~l--~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~- 227 (434)
..+.+.+ ...|...+.|.+.. +..-...+.-.... .+ +..-.|..++++.++..+.+ .+.|..|+||...
T Consensus 293 nt~~faV--gG~dqf~RvYD~R~-~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLa--SYnDe~IYLF~~~~ 367 (559)
T KOG1334|consen 293 NTNEFAV--GGSDQFARVYDQRR-IDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLA--SYNDEDIYLFNKSM 367 (559)
T ss_pred Ccccccc--CChhhhhhhhcccc-hhhccccchhhhcCCccccccCcccceeEEecCCccceee--eecccceEEecccc
Confidence 5544322 22344444333211 11101111000000 01 11346789999988888885 4456689999532
Q ss_pred --c------c----eeEEeCCcCee-----EE-EECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEE
Q 013871 228 --C------R----PILELGSGPYN-----TV-RWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEW 287 (434)
Q Consensus 228 --~------~----~~~~~~~~~~~-----~i-~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~w 287 (434)
+ . .+...-++.+| .+ .|-|...|+++|+ .-|.|.||+.++++.|....+. -+.+++=
T Consensus 368 ~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGS---DCGhIFiW~K~t~eii~~MegDr~VVNCLEp 444 (559)
T KOG1334|consen 368 GDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGS---DCGHIFIWDKKTGEIIRFMEGDRHVVNCLEP 444 (559)
T ss_pred ccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecC---ccceEEEEecchhHHHHHhhcccceEeccCC
Confidence 2 1 11111122222 22 5889999998876 5599999999999888777663 3445888
Q ss_pred CCCCCEEEEEEcCCceeeCCcEEEEeecC
Q 013871 288 SPDGRYFMTATTAPRLQIDNGIKIFHHNG 316 (434)
Q Consensus 288 spdg~~l~tas~~prl~~D~~i~iw~~~g 316 (434)
+|--..||+++. |.-||||.-.+
T Consensus 445 HP~~PvLAsSGi------d~DVKIWTP~~ 467 (559)
T KOG1334|consen 445 HPHLPVLASSGI------DHDVKIWTPLT 467 (559)
T ss_pred CCCCchhhccCC------ccceeeecCCc
Confidence 899899999998 99999999744
No 253
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.89 E-value=2.3e-07 Score=91.06 Aligned_cols=187 Identities=13% Similarity=0.117 Sum_probs=116.0
Q ss_pred ceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec--CC--eEEEEeCC
Q 013871 3 LLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA--TN--EIQFFDTT 78 (434)
Q Consensus 3 ~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~--~~--~i~v~~~~ 78 (434)
..=.|||+|..|+..+-..+. ...+.++|+.+|+......... ... .++|||||+.|+... ++ .|.++|+.
T Consensus 196 ~~p~ws~~~~~~~y~~f~~~~-~~~i~~~~l~~g~~~~i~~~~g---~~~-~P~fspDG~~l~f~~~rdg~~~iy~~dl~ 270 (425)
T COG0823 196 LTPAWSPDGKKLAYVSFELGG-CPRIYYLDLNTGKRPVILNFNG---NNG-APAFSPDGSKLAFSSSRDGSPDIYLMDLD 270 (425)
T ss_pred eccccCcCCCceEEEEEecCC-CceEEEEeccCCccceeeccCC---ccC-CccCCCCCCEEEEEECCCCCccEEEEcCC
Confidence 344689999998877633211 1579999999886544333221 222 579999999999874 33 44555544
Q ss_pred CCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEE
Q 013871 79 DFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLA 158 (434)
Q Consensus 79 ~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~ 158 (434)
.... .++. -.......-.|+|||++|++
T Consensus 271 ~~~~---~~Lt-------------------------------------------------~~~gi~~~Ps~spdG~~ivf 298 (425)
T COG0823 271 GKNL---PRLT-------------------------------------------------NGFGINTSPSWSPDGSKIVF 298 (425)
T ss_pred CCcc---eecc-------------------------------------------------cCCccccCccCCCCCCEEEE
Confidence 3210 0000 00011114568999999888
Q ss_pred EEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCe--EEEEecccce-eEEeC
Q 013871 159 VAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPAS--ATIFNKKCRP-ILELG 235 (434)
Q Consensus 159 ~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~--v~l~d~~~~~-~~~~~ 235 (434)
. .|..++ ..+|.++..+....+++....+.. ...|||||+++++.. ...+. +.++|+.... +..+.
T Consensus 299 ~----Sdr~G~-----p~I~~~~~~g~~~~riT~~~~~~~-~p~~SpdG~~i~~~~-~~~g~~~i~~~~~~~~~~~~~lt 367 (425)
T COG0823 299 T----SDRGGR-----PQIYLYDLEGSQVTRLTFSGGGNS-NPVWSPDGDKIVFES-SSGGQWDIDKNDLASGGKIRILT 367 (425)
T ss_pred E----eCCCCC-----cceEEECCCCCceeEeeccCCCCc-CccCCCCCCEEEEEe-ccCCceeeEEeccCCCCcEEEcc
Confidence 7 333333 368888888876666665533333 789999999999975 33444 6666665443 45553
Q ss_pred -CcCeeEEEECCCCCeEEEEecC
Q 013871 236 -SGPYNTVRWNPKGKFLCLAGFG 257 (434)
Q Consensus 236 -~~~~~~i~~SP~g~~l~~~~~~ 257 (434)
......-.|.|+|+.+...+..
T Consensus 368 ~~~~~e~ps~~~ng~~i~~~s~~ 390 (425)
T COG0823 368 STYLNESPSWAPNGRMIMFSSGQ 390 (425)
T ss_pred ccccCCCCCcCCCCceEEEeccC
Confidence 3334467899999988876543
No 254
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.87 E-value=1.8e-05 Score=75.04 Aligned_cols=288 Identities=13% Similarity=0.075 Sum_probs=135.5
Q ss_pred EecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCce
Q 013871 6 TCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGI 84 (434)
Q Consensus 6 ~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~ 84 (434)
+|.+||+.|+..+.. ....++.+.|+.+++..+ +..... .......++++++.++... +.+|.-.|+.+.....
T Consensus 42 ~ft~dG~kllF~s~~--dg~~nly~lDL~t~~i~Q-LTdg~g--~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~ 116 (386)
T PF14583_consen 42 CFTDDGRKLLFASDF--DGNRNLYLLDLATGEITQ-LTDGPG--DNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERV 116 (386)
T ss_dssp -B-TTS-EEEEEE-T--TSS-EEEEEETTT-EEEE----SS---B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEE
T ss_pred CcCCCCCEEEEEecc--CCCcceEEEEcccCEEEE-CccCCC--CCccceEEecCCCeEEEEECCCeEEEEECCcCcEEE
Confidence 589999999987742 235789999999997644 433321 2233567889999887764 4589988988865434
Q ss_pred eeeeecCCeeEEEEeCCCCC-eE-EEEecCCC----------------CCCceEEEEEcCCCCCCCceeeeeecccceeE
Q 013871 85 LYRLRVPGVAAFEVSKAPGS-HV-AVFVPESK----------------GSPASVQIYACGKDLQSQPLARRSFFRCSTVQ 146 (434)
Q Consensus 85 ~~~~~~~~v~~~~~sp~~~~-~i-a~~~~~~~----------------~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~ 146 (434)
...+...-+....|+.+.+. .+ .+.+.... ..+..|...++.+ ++. ...---..-...
T Consensus 117 vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~t---G~~-~~v~~~~~wlgH 192 (386)
T PF14583_consen 117 VYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKT---GER-KVVFEDTDWLGH 192 (386)
T ss_dssp EEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT-----E-EEEEEESS-EEE
T ss_pred EEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCC---Cce-eEEEecCccccC
Confidence 44444443444566544333 22 22222111 1122333334433 222 111111122235
Q ss_pred EEECCCCCeEEEEE-EecccccCceeecceeEEEEeeCCcceeeeecCCCC-CeEEEEECcCCCEEEEEEccCCC---eE
Q 013871 147 LNWNRGSTGLLAVA-QSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEG-PVHDVQWSYSGSEFAVVYGFMPA---SA 221 (434)
Q Consensus 147 ~~ws~~G~~l~~~~-~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~-~i~~v~wspdg~~~av~~g~~~~---~v 221 (434)
+.++|....++..+ ....+... ..||.++.++.....+.-...+ .+..=-|.|||..+.+......+ -|
T Consensus 193 ~~fsP~dp~li~fCHEGpw~~Vd------~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i 266 (386)
T PF14583_consen 193 VQFSPTDPTLIMFCHEGPWDLVD------QRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWI 266 (386)
T ss_dssp EEEETTEEEEEEEEE-S-TTTSS-------SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEE
T ss_pred cccCCCCCCEEEEeccCCcceec------eEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEE
Confidence 66777655544443 33334433 1378888877654443211122 33344699999998875432222 44
Q ss_pred EEEecccceeEEeC-CcCeeEEEECCCCCeEEEEecCC-------------CCCeEEEEEccCCEEEEEeeC--------
Q 013871 222 TIFNKKCRPILELG-SGPYNTVRWNPKGKFLCLAGFGN-------------LPGDMAFWDYVDGKQLGTTRA-------- 279 (434)
Q Consensus 222 ~l~d~~~~~~~~~~-~~~~~~i~~SP~g~~l~~~~~~~-------------~~g~i~iwd~~~~~~i~~~~~-------- 279 (434)
.-+|.+......+. .....-+--|+||++++-=|.+. .+-.|++++++.++......+
T Consensus 267 ~~~d~~t~~~~~~~~~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~ 346 (386)
T PF14583_consen 267 AGYDPDTGERRRLMEMPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLD 346 (386)
T ss_dssp EEE-TTT--EEEEEEE-SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BT
T ss_pred EeeCCCCCCceEEEeCCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeec
Confidence 55677644333332 22344566789999887544321 012577888887754332222
Q ss_pred -C-Cce--EEEECCCCCEEEEEEcCCceeeCCcEEEEe
Q 013871 280 -E-CSV--TSEWSPDGRYFMTATTAPRLQIDNGIKIFH 313 (434)
Q Consensus 280 -~-~~~--~~~wspdg~~l~tas~~prl~~D~~i~iw~ 313 (434)
+ .+. ...|||||++++..+.. .|...||-
T Consensus 347 ~~~q~~hPhp~FSPDgk~VlF~Sd~-----~G~~~vY~ 379 (386)
T PF14583_consen 347 GDRQVTHPHPSFSPDGKWVLFRSDM-----EGPPAVYL 379 (386)
T ss_dssp TBSSTT----EE-TTSSEEEEEE-T-----TSS-EEEE
T ss_pred CCCccCCCCCccCCCCCEEEEECCC-----CCCccEEE
Confidence 1 122 38999999999999874 55555543
No 255
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.87 E-value=7e-07 Score=86.33 Aligned_cols=268 Identities=14% Similarity=0.141 Sum_probs=147.2
Q ss_pred ceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCCC
Q 013871 3 LLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDFP 81 (434)
Q Consensus 3 ~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~~ 81 (434)
+.|..||||+||+..+. ....|++||+.+-.. .|.-+- ..+.+...-.|.|=.-++.. .|..|.+.....
T Consensus 55 t~ik~s~DGqY~lAtG~----YKP~ikvydlanLSL--KFERhl-Dae~V~feiLsDD~SK~v~L~~DR~IefHak~G-- 125 (703)
T KOG2321|consen 55 TRIKVSPDGQYLLATGT----YKPQIKVYDLANLSL--KFERHL-DAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYG-- 125 (703)
T ss_pred ceeEecCCCcEEEEecc----cCCceEEEEccccee--eeeecc-cccceeEEEeccchhhheEeecCceeeehhhcC--
Confidence 46889999999987663 357899999986643 222211 12444334445565555555 455777655332
Q ss_pred CceeeeeecCC-eeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEE
Q 013871 82 KGILYRLRVPG-VAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVA 160 (434)
Q Consensus 82 ~~~~~~~~~~~-v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~ 160 (434)
....++++. -.++.++--... +|.. +....|.-+++.. ++-+.....-......+..|+....|++.+
T Consensus 126 --~hy~~RIP~~GRDm~y~~~scD---ly~~---gsg~evYRlNLEq---GrfL~P~~~~~~~lN~v~in~~hgLla~Gt 194 (703)
T KOG2321|consen 126 --RHYRTRIPKFGRDMKYHKPSCD---LYLV---GSGSEVYRLNLEQ---GRFLNPFETDSGELNVVSINEEHGLLACGT 194 (703)
T ss_pred --eeeeeecCcCCccccccCCCcc---EEEe---ecCcceEEEEccc---cccccccccccccceeeeecCccceEEecc
Confidence 223333331 122322211111 1111 1122344444444 333333333334445556666555444332
Q ss_pred EecccccCceeecce--eEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccc-eeEEe---
Q 013871 161 QSDVDKTNQSYYGES--KLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PILEL--- 234 (434)
Q Consensus 161 ~~~~d~~~~~~~g~~--~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~-~~~~~--- 234 (434)
.+.....|.... .+-.++....-....-....-.|.++.|+.+|-.++| |...|.+.|||++.. ++..-
T Consensus 195 ---~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aV--Gts~G~v~iyDLRa~~pl~~kdh~ 269 (703)
T KOG2321|consen 195 ---EDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAV--GTSTGSVLIYDLRASKPLLVKDHG 269 (703)
T ss_pred ---cCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEe--eccCCcEEEEEcccCCceeecccC
Confidence 122222222110 0111111110000000011235899999999988885 888999999999743 33322
Q ss_pred CCcCeeEEEECCCCC--eEEEEecCCCCCeEEEEEccCCEEEEEeeCC-CceEEEECCCCCEEEEEEc
Q 013871 235 GSGPYNTVRWNPKGK--FLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-CSVTSEWSPDGRYFMTATT 299 (434)
Q Consensus 235 ~~~~~~~i~~SP~g~--~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-~~~~~~wspdg~~l~tas~ 299 (434)
..-++..+.|.+.+. .|++.. ...++|||..+|+.+..++.. .+..+++-|++-+|++|-.
T Consensus 270 ~e~pi~~l~~~~~~~q~~v~S~D----k~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane 333 (703)
T KOG2321|consen 270 YELPIKKLDWQDTDQQNKVVSMD----KRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANE 333 (703)
T ss_pred CccceeeecccccCCCceEEecc----hHHhhhcccccCCceeeccccCCcCceeeecCCceEEEecC
Confidence 367899999988743 454442 247999999999988877653 5566899999999999887
No 256
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.86 E-value=2.7e-06 Score=91.38 Aligned_cols=271 Identities=14% Similarity=0.188 Sum_probs=144.6
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEE----EcCCC--cEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEE
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILW----KTETG--EAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQF 74 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iW----d~~~g--~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v 74 (434)
|.++.|=++..-|+... .+|.|.+. +..+. +.+..+. .++.+++||||+.+|+... +++|.+
T Consensus 78 ivs~~yl~d~~~l~~~~-----~~Gdi~~~~~~~~~~~~~~E~VG~vd------~GI~a~~WSPD~Ella~vT~~~~l~~ 146 (928)
T PF04762_consen 78 IVSFQYLADSESLCIAL-----ASGDIILVREDPDPDEDEIEIVGSVD------SGILAASWSPDEELLALVTGEGNLLL 146 (928)
T ss_pred EEEEEeccCCCcEEEEE-----CCceEEEEEccCCCCCceeEEEEEEc------CcEEEEEECCCcCEEEEEeCCCEEEE
Confidence 44566666666555555 56778777 44433 2333331 5677999999999999885 457776
Q ss_pred EeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEE-E-ecCC-----CCCCceEEEEEcCCCCCCCceeeeeecccceeEE
Q 013871 75 FDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAV-F-VPES-----KGSPASVQIYACGKDLQSQPLARRSFFRCSTVQL 147 (434)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~-~-~~~~-----~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~ 147 (434)
.. .+++......++.+... .+..+.+ | ..++ .|..+.-.+-+ |+.. .......+ .....+.+
T Consensus 147 mt-~~fd~i~E~~l~~~~~~-------~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~-p~~~-~~d~~~~s-~dd~~~~I 215 (928)
T PF04762_consen 147 MT-RDFDPISEVPLDSDDFG-------ESKHVSVGWGKKETQFHGSAGKAAARQLRD-PTVP-KVDEGKLS-WDDGRVRI 215 (928)
T ss_pred Ee-ccceEEEEeecCccccC-------CCceeeeccCcccCccCcchhhhhhhhccC-CCCC-ccccCccc-cCCCceEE
Confidence 64 34443222222211100 0112211 1 0010 11110000000 0000 00112233 45567899
Q ss_pred EECCCCCeEEEEEEeccc---ccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCC-CeEEE
Q 013871 148 NWNRGSTGLLAVAQSDVD---KTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMP-ASATI 223 (434)
Q Consensus 148 ~ws~~G~~l~~~~~~~~d---~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~-~~v~l 223 (434)
+|-.||.++++..-.... ...+.|.- .|.-.... -...|--+.++|.|.|+.+|.+....+ ..|.+
T Consensus 216 SWRGDG~yFAVss~~~~~~~~R~iRVy~R---------eG~L~stS-E~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvF 285 (928)
T PF04762_consen 216 SWRGDGEYFAVSSVEPETGSRRVIRVYSR---------EGELQSTS-EPVDGLEGALSWRPSGNLIASSQRLPDRHDVVF 285 (928)
T ss_pred EECCCCcEEEEEEEEcCCCceeEEEEECC---------CceEEecc-ccCCCccCCccCCCCCCEEEEEEEcCCCcEEEE
Confidence 999999998775432111 12222221 11111000 011344567999999999997543222 26777
Q ss_pred EecccceeEEe------CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCE----EEEEeeCC-CceEEEECCCCC
Q 013871 224 FNKKCRPILEL------GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK----QLGTTRAE-CSVTSEWSPDGR 292 (434)
Q Consensus 224 ~d~~~~~~~~~------~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~----~i~~~~~~-~~~~~~wspdg~ 292 (434)
|.-.+-.-.+| ....+..+.||+|+..||+.-.+ .|.+|-+.++. ..-.+... ....+.|+|...
T Consensus 286 fErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~----~vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p 361 (928)
T PF04762_consen 286 FERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLED----RVQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKP 361 (928)
T ss_pred EecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecC----CceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCC
Confidence 87655443333 24578999999999999996522 59999999874 22233322 334499999644
Q ss_pred -EEEEEEcCCceeeCCcEEEEee
Q 013871 293 -YFMTATTAPRLQIDNGIKIFHH 314 (434)
Q Consensus 293 -~l~tas~~prl~~D~~i~iw~~ 314 (434)
.|...+. ++.+.++++
T Consensus 362 ~~L~v~t~------~g~~~~~~~ 378 (928)
T PF04762_consen 362 LRLHVLTS------NGQYEIYDF 378 (928)
T ss_pred CEEEEEec------CCcEEEEEE
Confidence 4566665 566665554
No 257
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.78 E-value=3.1e-05 Score=83.43 Aligned_cols=289 Identities=17% Similarity=0.267 Sum_probs=159.6
Q ss_pred eEEecCCCcEEEEEecCCCC-CCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC----CeEEEEeCC
Q 013871 4 LLTCLRVGLIIQTFQKSSTP-QEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT----NEIQFFDTT 78 (434)
Q Consensus 4 ~l~fSP~g~~L~t~~~~~~~-~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~----~~i~v~~~~ 78 (434)
.|+|=.||.|+|+-+..... .-+.++||+ .+|+. .+....- . ..-.+++|.|.|+++|+... ..|.+|+-+
T Consensus 214 ~ISWRGDG~yFAVss~~~~~~~~R~iRVy~-ReG~L-~stSE~v-~-gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErN 289 (928)
T PF04762_consen 214 RISWRGDGEYFAVSSVEPETGSRRVIRVYS-REGEL-QSTSEPV-D-GLEGALSWRPSGNLIASSQRLPDRHDVVFFERN 289 (928)
T ss_pred EEEECCCCcEEEEEEEEcCCCceeEEEEEC-CCceE-EeccccC-C-CccCCccCCCCCCEEEEEEEcCCCcEEEEEecC
Confidence 57899999999986642222 247899999 44764 3322221 1 22237899999999998732 489999976
Q ss_pred CCCCceeeeee----cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCC--CCCceeeeeeccc-ceeEEEECC
Q 013871 79 DFPKGILYRLR----VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDL--QSQPLARRSFFRC-STVQLNWNR 151 (434)
Q Consensus 79 ~~~~~~~~~~~----~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~--~~~~i~~~~~~~~-~~~~~~ws~ 151 (434)
....+ ...++ ...|..+.|+++ +..+|++..+ .|++|...++. .++.+. +... ....+.|+|
T Consensus 290 GLrhg-eF~l~~~~~~~~v~~l~Wn~d-s~iLAv~~~~------~vqLWt~~NYHWYLKqei~---~~~~~~~~~~~Wdp 358 (928)
T PF04762_consen 290 GLRHG-EFTLRFDPEEEKVIELAWNSD-SEILAVWLED------RVQLWTRSNYHWYLKQEIR---FSSSESVNFVKWDP 358 (928)
T ss_pred CcEee-eEecCCCCCCceeeEEEECCC-CCEEEEEecC------CceEEEeeCCEEEEEEEEE---ccCCCCCCceEECC
Confidence 64332 23333 236899999999 7888887733 29999987731 011111 1111 223488998
Q ss_pred CCCe-EEEEEEecccccCcee-----ec------ceeEEEEeeCCcceeeee--------------cCCCCCeEEEEECc
Q 013871 152 GSTG-LLAVAQSDVDKTNQSY-----YG------ESKLNYLTTDGTHEGLVP--------------LRKEGPVHDVQWSY 205 (434)
Q Consensus 152 ~G~~-l~~~~~~~~d~~~~~~-----~g------~~~l~~l~~~~~~~~~v~--------------l~~~~~i~~v~wsp 205 (434)
.... |.+++.... .....| .+ ... ...-++|..-...+ +.-..+|.+++|++
T Consensus 359 e~p~~L~v~t~~g~-~~~~~~~~~v~~s~~~~~~D~g-~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~ 436 (928)
T PF04762_consen 359 EKPLRLHVLTSNGQ-YEIYDFAWDVSRSPGSSPNDNG-TVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSP 436 (928)
T ss_pred CCCCEEEEEecCCc-EEEEEEEEEEEecCCCCccCce-EEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeC
Confidence 6443 333322110 000000 00 000 01112232211111 12267899999999
Q ss_pred CCCEEEEEEccCCCeEEEEeccccee-----------E----------EeCCcCeeEEEECCCCCeEEEEecCCCCCeEE
Q 013871 206 SGSEFAVVYGFMPASATIFNKKCRPI-----------L----------ELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMA 264 (434)
Q Consensus 206 dg~~~av~~g~~~~~v~l~d~~~~~~-----------~----------~~~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~ 264 (434)
++..+++++. ++.+.+|....... . .........+.|-.+..++++...+.....+.
T Consensus 437 ~~~~~avl~~--d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 514 (928)
T PF04762_consen 437 SNSRFAVLTS--DGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIV 514 (928)
T ss_pred CCCeEEEEEC--CCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecCcccceEE
Confidence 9988887644 67888886421110 0 01233456788888777777766542346888
Q ss_pred EEEccCCE---EEEEee-CCCce-EEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc
Q 013871 265 FWDYVDGK---QLGTTR-AECSV-TSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS 317 (434)
Q Consensus 265 iwd~~~~~---~i~~~~-~~~~~-~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~ 317 (434)
+++..+.+ .+.... ..... .+...++...++.-+. ||.+...+..+.
T Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~------~G~v~~~~~~~~ 566 (928)
T PF04762_consen 515 LVDIDDSENSASVESSTEVDGVVLIISSSPDSGSLYIQTN------DGKVFQLSSDGE 566 (928)
T ss_pred EEEeccCCCceeEEEEeccCceEEEEeeCCCCcEEEEEEC------CCEEEEeecCCC
Confidence 88874332 222222 22222 2455555554455555 666665555444
No 258
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.78 E-value=9.2e-06 Score=88.93 Aligned_cols=112 Identities=14% Similarity=0.092 Sum_probs=76.9
Q ss_pred CeEEEEECcCCCEEEEEEccCCCeEEEEecccceeE--------------EeCC--c--------CeeEEEECCCCCeEE
Q 013871 197 PVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPIL--------------ELGS--G--------PYNTVRWNPKGKFLC 252 (434)
Q Consensus 197 ~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~--------------~~~~--~--------~~~~i~~SP~g~~l~ 252 (434)
..+.++++|+|+.++++ ...+++|++||++..... .++. + .-..++++|+|++++
T Consensus 741 ~P~GIavspdG~~LYVA-Ds~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYV 819 (1057)
T PLN02919 741 QPSGISLSPDLKELYIA-DSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYV 819 (1057)
T ss_pred CccEEEEeCCCCEEEEE-ECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEE
Confidence 34679999999987764 555779999998643221 1110 0 124789999998554
Q ss_pred EEecCCCCCeEEEEEccCCEEEEEeeC---------------CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc
Q 013871 253 LAGFGNLPGDMAFWDYVDGKQLGTTRA---------------ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS 317 (434)
Q Consensus 253 ~~~~~~~~g~i~iwd~~~~~~i~~~~~---------------~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~ 317 (434)
+..+ ++.|.+||..++........ ..+..++++++|+.+++-+. ++.|++|+....
T Consensus 820 -ADs~--N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~------Nn~Irvid~~~~ 890 (1057)
T PLN02919 820 -ADSY--NHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTN------NSLIRYLDLNKG 890 (1057)
T ss_pred -EECC--CCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECC------CCEEEEEECCCC
Confidence 4433 37999999988765533211 13456899999997776666 899999999664
Q ss_pred e
Q 013871 318 L 318 (434)
Q Consensus 318 ~ 318 (434)
.
T Consensus 891 ~ 891 (1057)
T PLN02919 891 E 891 (1057)
T ss_pred c
Confidence 3
No 259
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.75 E-value=7.3e-07 Score=91.81 Aligned_cols=232 Identities=13% Similarity=0.149 Sum_probs=142.5
Q ss_pred CCcEEEEEecCCCCCCCcEEEEEc-CC----CcEEEEEeecCc-----CCCCCCeeeecCCCcEEEEec-CCeEEEEeCC
Q 013871 10 VGLIIQTFQKSSTPQEKNVILWKT-ET----GEAVYQLFQKNM-----TKTTWPSIRFSSDEAVACRMA-TNEIQFFDTT 78 (434)
Q Consensus 10 ~g~~L~t~~~~~~~~d~~v~iWd~-~~----g~~~~~~~~~~~-----~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~ 78 (434)
|-..|+|++ .|+.|+||+- .+ -+.+..+..-+. ...+. .+.|-....+|.+.+ -..|+|||..
T Consensus 1122 D~aLlLtas-----~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~-v~dWqQ~~G~Ll~tGd~r~IRIWDa~ 1195 (1387)
T KOG1517|consen 1122 DDALLLTAS-----SDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGL-VVDWQQQSGHLLVTGDVRSIRIWDAH 1195 (1387)
T ss_pred chhheeeec-----cCceEEEecccccccCCceeEEeeccccccCccCCCCCe-eeehhhhCCeEEecCCeeEEEEEecc
Confidence 345666777 8999999964 22 244544433211 01232 578887655555554 4799999997
Q ss_pred CCCCceeeeeecC---CeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccc--eeEEEECCCC
Q 013871 79 DFPKGILYRLRVP---GVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCS--TVQLNWNRGS 153 (434)
Q Consensus 79 ~~~~~~~~~~~~~---~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~--~~~~~ws~~G 153 (434)
.... ...+... .|++++-+-..+..++. +-.+|.|++||.....+...+....-|... ++.+...+.|
T Consensus 1196 ~E~~--~~diP~~s~t~vTaLS~~~~~gn~i~A-----GfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G 1268 (1387)
T KOG1517|consen 1196 KEQV--VADIPYGSSTLVTALSADLVHGNIIAA-----GFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQG 1268 (1387)
T ss_pred ccee--EeecccCCCccceeecccccCCceEEE-----eecCCceEEeecccCCccccceeecccCCcccceeEEeecCC
Confidence 6332 2223222 34443322222344442 345689999998654334566666666665 7888888877
Q ss_pred CeEEEEEEecccccCceeecceeEEEEeeCC-cceeeeecCC----CCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc
Q 013871 154 TGLLAVAQSDVDKTNQSYYGESKLNYLTTDG-THEGLVPLRK----EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC 228 (434)
Q Consensus 154 ~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~-~~~~~v~l~~----~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~ 228 (434)
-.-++.++++ |+ +++++... ..+..+++.. .+.+.++..++....+| +|+. ..|.||++.+
T Consensus 1269 ~~elvSgs~~---------G~--I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiA--sGs~-q~ikIy~~~G 1334 (1387)
T KOG1517|consen 1269 LGELVSGSQD---------GD--IQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIA--SGSA-QLIKIYSLSG 1334 (1387)
T ss_pred CcceeeeccC---------Ce--EEEEecccCcccccceeeeccccCccceeeeeccCCCeee--ecCc-ceEEEEecCh
Confidence 6644444333 32 34444433 2222222222 22488999999988888 5765 7999999988
Q ss_pred ceeEEe---------CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC
Q 013871 229 RPILEL---------GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG 271 (434)
Q Consensus 229 ~~~~~~---------~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~ 271 (434)
+.+..+ ..+.+.|++|+|.--++|.|..| ..|.||...+.
T Consensus 1335 ~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~D---s~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1335 EQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSAD---STVSIYSCEKP 1383 (1387)
T ss_pred hhhcccccCcccccCcCCCcceeeecchhHhhhhccCC---ceEEEeecCCc
Confidence 776543 24667899999998888877644 49999976543
No 260
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.74 E-value=2.8e-06 Score=88.93 Aligned_cols=257 Identities=14% Similarity=0.203 Sum_probs=141.5
Q ss_pred EEcCCCcEEEEEeecCcCCCCCCeeeecCC-CcEEEEec-CCeEEEEeCCCCCCc-ee----eeee--cCCeeEEEEeCC
Q 013871 31 WKTETGEAVYQLFQKNMTKTTWPSIRFSSD-EAVACRMA-TNEIQFFDTTDFPKG-IL----YRLR--VPGVAAFEVSKA 101 (434)
Q Consensus 31 Wd~~~g~~~~~~~~~~~~~~~~~~~~~S~d-~~~la~~~-~~~i~v~~~~~~~~~-~~----~~~~--~~~v~~~~~sp~ 101 (434)
|++ .|..+..+..++ ..+..++-+++ +.+|++++ ||+|++|+....... .. .+.+ ...+..+..-+.
T Consensus 1034 W~p-~G~lVAhL~Ehs---~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~ 1109 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHS---SAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGN 1109 (1431)
T ss_pred CCc-cceEeehhhhcc---ccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccC
Confidence 663 466666665544 33336666665 49999995 579999998653321 11 1111 123455555554
Q ss_pred CCCeEEEEecCCCCCCceEEEEEcCCCCCCCc----eeeeeecc-cceeEEE-EC-CCCCeEEEEEEecccccCceeecc
Q 013871 102 PGSHVAVFVPESKGSPASVQIYACGKDLQSQP----LARRSFFR-CSTVQLN-WN-RGSTGLLAVAQSDVDKTNQSYYGE 174 (434)
Q Consensus 102 ~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~----i~~~~~~~-~~~~~~~-ws-~~G~~l~~~~~~~~d~~~~~~~g~ 174 (434)
+..+|+- +.+|.|++.++........ .......+ ...+.|. +. ..+..+++. .+. . +
T Consensus 1110 -~~~~Av~-----t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy-~T~--~------~- 1173 (1431)
T KOG1240|consen 1110 -GDQFAVS-----TKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVY-ATD--L------S- 1173 (1431)
T ss_pred -CCeEEEE-----cCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEE-EEe--c------c-
Confidence 3445542 5678899988865211111 11111111 1112221 11 122211111 110 0 1
Q ss_pred eeEEEEeeCCccee-eeec-CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccc-eeEEe---CCcCeeEEEECC--
Q 013871 175 SKLNYLTTDGTHEG-LVPL-RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PILEL---GSGPYNTVRWNP-- 246 (434)
Q Consensus 175 ~~l~~l~~~~~~~~-~v~l-~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~-~~~~~---~~~~~~~i~~SP-- 246 (434)
.+..+++...+.. +... ...|.|.+++.+|-+.+++ .|...|.+.+||++.+ ++.+. +..+++.+...|
T Consensus 1174 -~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~Wlv--iGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~ 1250 (1431)
T KOG1240|consen 1174 -RIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLV--IGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTY 1250 (1431)
T ss_pred -ceEEecchhhhhHHhhhcCccccceeEEEecCCceEEE--EecCCceEEEEEeecCceeecccCcccCCcceEEeeccC
Confidence 1233333222110 0111 1268999999999999888 4888899999999854 44444 245556555444
Q ss_pred -CCCeEEEEec-CCCCCeEEEEEccCCEEEEEeeCC-C--------------------ceEEEECCCCCEEEEEEcCCce
Q 013871 247 -KGKFLCLAGF-GNLPGDMAFWDYVDGKQLGTTRAE-C--------------------SVTSEWSPDGRYFMTATTAPRL 303 (434)
Q Consensus 247 -~g~~l~~~~~-~~~~g~i~iwd~~~~~~i~~~~~~-~--------------------~~~~~wspdg~~l~tas~~prl 303 (434)
....+++++. ++ +.|.+|++.++-+-..+-.. . ...+.+.--+.+++++++
T Consensus 1251 ~~~S~~vs~~~~~~--nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggs---- 1324 (1431)
T KOG1240|consen 1251 PQESVSVSAGSSSN--NEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGS---- 1324 (1431)
T ss_pred CCCceEEEecccCC--CceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCC----
Confidence 4457777776 44 79999999988443333221 1 112444445668888888
Q ss_pred eeCCcEEEEeecCce
Q 013871 304 QIDNGIKIFHHNGSL 318 (434)
Q Consensus 304 ~~D~~i~iw~~~g~~ 318 (434)
|.+|+.||...-.
T Consensus 1325 --d~kIR~wD~~~p~ 1337 (1431)
T KOG1240|consen 1325 --DMKIRKWDPTRPE 1337 (1431)
T ss_pred --ccceeeccCCCcc
Confidence 9999999986543
No 261
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.71 E-value=1.4e-05 Score=77.36 Aligned_cols=234 Identities=10% Similarity=0.046 Sum_probs=124.6
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecC-cC--------------CCCCCeeeecCCCcEEEE
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKN-MT--------------KTTWPSIRFSSDEAVACR 66 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~-~~--------------~~~~~~~~~S~d~~~la~ 66 (434)
+....|||+|++|+... +++|.++++.+++..+ +.... .. -..-..+-|||||++||+
T Consensus 45 ~~~~~~sP~g~~~~~v~------~~nly~~~~~~~~~~~-lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~ 117 (353)
T PF00930_consen 45 LQDAKWSPDGKYIAFVR------DNNLYLRDLATGQETQ-LTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAF 117 (353)
T ss_dssp BSEEEE-SSSTEEEEEE------TTEEEEESSTTSEEEE-SES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEE
T ss_pred cccceeecCCCeeEEEe------cCceEEEECCCCCeEE-eccccceeEEcCccceeccccccccccceEECCCCCEEEE
Confidence 45688999999999887 6899999988885443 22211 00 012246789999999998
Q ss_pred e-c-CCeEEEEeCC---CCCC--ceeeee---------------------------ec--------CCeeEEEEeCCCCC
Q 013871 67 M-A-TNEIQFFDTT---DFPK--GILYRL---------------------------RV--------PGVAAFEVSKAPGS 104 (434)
Q Consensus 67 ~-~-~~~i~v~~~~---~~~~--~~~~~~---------------------------~~--------~~v~~~~~sp~~~~ 104 (434)
. . +..|..+.+. .... .....+ .. .-+..+.|++++..
T Consensus 118 ~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~ 197 (353)
T PF00930_consen 118 LRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKR 197 (353)
T ss_dssp EEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEE
T ss_pred EEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcE
Confidence 6 2 2233333221 1100 001011 00 02556677776332
Q ss_pred eEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecc---cceeEEEE-CCCCCeEEEEEEecccccCceeecceeEEEE
Q 013871 105 HVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFR---CSTVQLNW-NRGSTGLLAVAQSDVDKTNQSYYGESKLNYL 180 (434)
Q Consensus 105 ~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~---~~~~~~~w-s~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l 180 (434)
.+..+. ........+.+++..+.. .+.+. ..... .....+.| .++|..++.+.. +. |-..||.+
T Consensus 198 l~~~~~-nR~q~~~~l~~~d~~tg~-~~~~~-~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~----~~-----G~~hly~~ 265 (353)
T PF00930_consen 198 LWVQWL-NRDQNRLDLVLCDASTGE-TRVVL-EETSDGWVDVYDPPHFLGPDGNEFLWISE----RD-----GYRHLYLY 265 (353)
T ss_dssp EEEEEE-ETTSTEEEEEEEEECTTT-CEEEE-EEESSSSSSSSSEEEE-TTTSSEEEEEEE----TT-----SSEEEEEE
T ss_pred EEEEEc-ccCCCEEEEEEEECCCCc-eeEEE-EecCCcceeeecccccccCCCCEEEEEEE----cC-----CCcEEEEE
Confidence 333332 233344455666665421 11111 11111 11123444 488888776643 22 33468999
Q ss_pred eeCCcceeeeecCCCCCeE-EEEECcCCCEEEEEEcc-CCC--eEEEEecc-cceeEEeC-CcCe-eEEEECCCCCeEEE
Q 013871 181 TTDGTHEGLVPLRKEGPVH-DVQWSYSGSEFAVVYGF-MPA--SATIFNKK-CRPILELG-SGPY-NTVRWNPKGKFLCL 253 (434)
Q Consensus 181 ~~~~~~~~~v~l~~~~~i~-~v~wspdg~~~av~~g~-~~~--~v~l~d~~-~~~~~~~~-~~~~-~~i~~SP~g~~l~~ 253 (434)
+..+.....++.. ...|. -+.|+++++.+.+.+.. .+. .+...+++ +..+..+. .... ..+.|||+|++++.
T Consensus 266 ~~~~~~~~~lT~G-~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~ 344 (353)
T PF00930_consen 266 DLDGGKPRQLTSG-DWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYVD 344 (353)
T ss_dssp ETTSSEEEESS-S-SS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSSEEEE
T ss_pred cccccceeccccC-ceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCCEEEE
Confidence 8888753333322 45664 47899998888775443 234 45555667 66676663 2333 48999999998887
Q ss_pred Ee
Q 013871 254 AG 255 (434)
Q Consensus 254 ~~ 255 (434)
.-
T Consensus 345 ~~ 346 (353)
T PF00930_consen 345 TY 346 (353)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 262
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.68 E-value=5.3e-07 Score=81.02 Aligned_cols=273 Identities=11% Similarity=0.159 Sum_probs=152.8
Q ss_pred CcceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCc-E----EEEEeecCcC---------CCCCCeeeecCCC---cE
Q 013871 1 MLLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGE-A----VYQLFQKNMT---------KTTWPSIRFSSDE---AV 63 (434)
Q Consensus 1 ~V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~-~----~~~~~~~~~~---------~~~~~~~~~S~d~---~~ 63 (434)
+|+++.|--.|.||+|+. ..+.|.++.-+... | ...|+.+... .+.+..+.|-.++ .+
T Consensus 28 ~ItaVefd~tg~YlatGD-----kgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hF 102 (460)
T COG5170 28 KITAVEFDETGLYLATGD-----KGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHF 102 (460)
T ss_pred eeeEEEeccccceEeecC-----CCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceE
Confidence 478999999999999966 56888888643221 1 1123322110 1345577887765 36
Q ss_pred EEEecCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCcee-----ee-
Q 013871 64 ACRMATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLA-----RR- 137 (434)
Q Consensus 64 la~~~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~-----~~- 137 (434)
|++..+.+|++|.+-......+..- +...---+|-+++... +..+++=++... ...++ ..
T Consensus 103 LlstNdktiKlWKiyeknlk~va~n---nls~~~~~~~~g~~~s---------~~~l~lprls~h--d~iiaa~p~rvya 168 (460)
T COG5170 103 LLSTNDKTIKLWKIYEKNLKVVAEN---NLSDSFHSPMGGPLTS---------TKELLLPRLSEH--DEIIAAKPCRVYA 168 (460)
T ss_pred EEecCCceeeeeeeecccchhhhcc---ccccccccccCCCcCC---------HHHhhccccccc--ceEEEeccceecc
Confidence 6767778999999865332111111 1111111222111110 011111111110 00011 01
Q ss_pred eecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCC------CCCeEEEEECcCCCEEE
Q 013871 138 SFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK------EGPVHDVQWSYSGSEFA 211 (434)
Q Consensus 138 ~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~------~~~i~~v~wspdg~~~a 211 (434)
..|...+.++.++.|...++.. .|.. .+||.+++..+.-.+|.+.. ..-|.+..|+|....+.
T Consensus 169 NaH~yhiNSiS~NsD~et~lSa----DdLr-------INLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~f 237 (460)
T COG5170 169 NAHPYHINSISFNSDKETLLSA----DDLR-------INLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVF 237 (460)
T ss_pred ccceeEeeeeeecCchheeeec----ccee-------eeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceE
Confidence 2233445577788777665432 1111 23555544333233333321 24678899999654443
Q ss_pred EEEccCCCeEEEEeccccee-------EEe------------CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC-
Q 013871 212 VVYGFMPASATIFNKKCRPI-------LEL------------GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG- 271 (434)
Q Consensus 212 v~~g~~~~~v~l~d~~~~~~-------~~~------------~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~- 271 (434)
. |....|.|.+-|++...+ +.. -...+..+.|||+|++|++-.+- ++.|||++..
T Consensus 238 m-YSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyl----tvkiwDvnm~k 312 (460)
T COG5170 238 M-YSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYL----TVKIWDVNMAK 312 (460)
T ss_pred E-EecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccc----eEEEEeccccc
Confidence 3 566678999999873322 111 12456779999999999876543 7999998744
Q ss_pred EEEEEeeCC--------------Cce---EEEECCCCCEEEEEEcCCceeeCCcEEEEee
Q 013871 272 KQLGTTRAE--------------CSV---TSEWSPDGRYFMTATTAPRLQIDNGIKIFHH 314 (434)
Q Consensus 272 ~~i~~~~~~--------------~~~---~~~wspdg~~l~tas~~prl~~D~~i~iw~~ 314 (434)
.++.++.-| .+. .+.||.|..++++|+. .|.+-|+-.
T Consensus 313 ~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy------~NNfgiyp~ 366 (460)
T COG5170 313 NPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSY------SNNFGIYPT 366 (460)
T ss_pred CCceeechHHHHHHHHHhhhhccceeeeEEEEecCCccccccccc------ccceeeecc
Confidence 455555322 222 3899999999999999 888888764
No 263
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.67 E-value=2.3e-06 Score=83.21 Aligned_cols=111 Identities=15% Similarity=0.137 Sum_probs=89.4
Q ss_pred CCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeE-Ee--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccC
Q 013871 194 KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPIL-EL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD 270 (434)
Q Consensus 194 ~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~-~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~ 270 (434)
+.++|..+.|+.+-..|. ++..+.++-.|+.+...+. .+ ....+.+++++|||..+++|+ +.|.+||+++
T Consensus 101 h~~~v~~~~~~~~~~ciy--S~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as-----~~ik~~~~~~ 173 (541)
T KOG4547|consen 101 HYGNVNEILDAQRLGCIY--SVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTAS-----RQIKVLDIET 173 (541)
T ss_pred CCCcceeeecccccCceE--ecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEecc-----ceEEEEEccC
Confidence 478999999998877777 5666889999998754443 33 566778999999999999987 5899999999
Q ss_pred CEEEEEeeCC--CceEEEECCC-----CCEEEEEEcCCceeeCCcEEEEeecC
Q 013871 271 GKQLGTTRAE--CSVTSEWSPD-----GRYFMTATTAPRLQIDNGIKIFHHNG 316 (434)
Q Consensus 271 ~~~i~~~~~~--~~~~~~wspd-----g~~l~tas~~prl~~D~~i~iw~~~g 316 (434)
++.+.+|.+| .+.+++|--+ |.||++.... +..+-+|-..+
T Consensus 174 kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~-----~r~i~~w~v~~ 221 (541)
T KOG4547|consen 174 KEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAA-----ERGITVWVVEK 221 (541)
T ss_pred ceEEEEecCCCcceEEEEEEEeccccccceeeecccc-----ccceeEEEEEc
Confidence 9999999998 3344777766 8888887664 78888898765
No 264
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.66 E-value=3.3e-05 Score=71.18 Aligned_cols=240 Identities=11% Similarity=0.177 Sum_probs=129.2
Q ss_pred eEEecC-CCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCc-CCCCCCeeeecCCCcEEEEecC------CeEEEE
Q 013871 4 LLTCLR-VGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNM-TKTTWPSIRFSSDEAVACRMAT------NEIQFF 75 (434)
Q Consensus 4 ~l~fSP-~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~-~~~~~~~~~~S~d~~~la~~~~------~~i~v~ 75 (434)
.++.+| ++..++...+| ..-+.+||..+|+.+..+..... |-.. .-.||+||++|.+..+ +.|-||
T Consensus 9 ~~a~~p~~~~avafaRRP----G~~~~v~D~~~g~~~~~~~a~~gRHFyG--Hg~fs~dG~~LytTEnd~~~g~G~IgVy 82 (305)
T PF07433_consen 9 GVAAHPTRPEAVAFARRP----GTFALVFDCRTGQLLQRLWAPPGRHFYG--HGVFSPDGRLLYTTENDYETGRGVIGVY 82 (305)
T ss_pred ceeeCCCCCeEEEEEeCC----CcEEEEEEcCCCceeeEEcCCCCCEEec--CEEEcCCCCEEEEeccccCCCcEEEEEE
Confidence 578899 45555555555 24588999999998776654321 0011 3479999999998732 589999
Q ss_pred eCC-CCCCceeeeeecC--CeeEEEEeCCCCCeEEEEecCCCCCC--ceEEEEEcCCCCCCCceeeeeecccceeEEEEC
Q 013871 76 DTT-DFPKGILYRLRVP--GVAAFEVSKAPGSHVAVFVPESKGSP--ASVQIYACGKDLQSQPLARRSFFRCSTVQLNWN 150 (434)
Q Consensus 76 ~~~-~~~~~~~~~~~~~--~v~~~~~sp~~~~~ia~~~~~~~~~~--~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws 150 (434)
|.. .+.. .-..... +--.+.+.|++ ..+++-.-+-...| ++.++ ++++ .
T Consensus 83 d~~~~~~r--i~E~~s~GIGPHel~l~pDG-~tLvVANGGI~Thpd~GR~kL-Nl~t---M------------------- 136 (305)
T PF07433_consen 83 DAARGYRR--IGEFPSHGIGPHELLLMPDG-ETLVVANGGIETHPDSGRAKL-NLDT---M------------------- 136 (305)
T ss_pred ECcCCcEE--EeEecCCCcChhhEEEcCCC-CEEEEEcCCCccCcccCceec-Chhh---c-------------------
Confidence 998 3222 2223333 34567888984 44444321111111 01110 1111 0
Q ss_pred CCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccC------CCeEEEE
Q 013871 151 RGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFM------PASATIF 224 (434)
Q Consensus 151 ~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~------~~~v~l~ 224 (434)
...|.++ ...++.. |-...+... .+.-.|..+++.++|.-++-. -++ +.-+-++
T Consensus 137 --~psL~~l----d~~sG~l------l~q~~Lp~~-------~~~lSiRHLa~~~~G~V~~a~-Q~qg~~~~~~PLva~~ 196 (305)
T PF07433_consen 137 --QPSLVYL----DARSGAL------LEQVELPPD-------LHQLSIRHLAVDGDGTVAFAM-QYQGDPGDAPPLVALH 196 (305)
T ss_pred --CCceEEE----ecCCCce------eeeeecCcc-------ccccceeeEEecCCCcEEEEE-ecCCCCCccCCeEEEE
Confidence 0112222 0011110 000000000 013356666776666443321 110 1123333
Q ss_pred ecccceeEEe---------CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceEEEECCCCCEEE
Q 013871 225 NKKCRPILEL---------GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFM 295 (434)
Q Consensus 225 d~~~~~~~~~---------~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~~~wspdg~~l~ 295 (434)
+.... +..+ -.+.+-+|+++++|.++++.+... |.+.+||..+++.+....-.++.-++-.+++ +++
T Consensus 197 ~~g~~-~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrG--g~~~~~d~~tg~~~~~~~l~D~cGva~~~~~-f~~ 272 (305)
T PF07433_consen 197 RRGGA-LRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRG--GRVAVWDAATGRLLGSVPLPDACGVAPTDDG-FLV 272 (305)
T ss_pred cCCCc-ceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCC--CEEEEEECCCCCEeeccccCceeeeeecCCc-eEE
Confidence 32211 1111 246778999999999887776533 6899999999999998887777778888887 555
Q ss_pred EEEc
Q 013871 296 TATT 299 (434)
Q Consensus 296 tas~ 299 (434)
+.+.
T Consensus 273 ssG~ 276 (305)
T PF07433_consen 273 SSGQ 276 (305)
T ss_pred eCCC
Confidence 5443
No 265
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=98.63 E-value=6.1e-07 Score=86.55 Aligned_cols=241 Identities=15% Similarity=0.157 Sum_probs=140.7
Q ss_pred CCCCCeeeecCCCcEEEEe-cCCeEEEEeCCC---CCC-----ceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCce
Q 013871 49 KTTWPSIRFSSDEAVACRM-ATNEIQFFDTTD---FPK-----GILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPAS 119 (434)
Q Consensus 49 ~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~---~~~-----~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~ 119 (434)
...++.++|-+-+-.|+++ .++.|.+|++.. -.. ....+.|...|-++.+++++...+ ++|.++.
T Consensus 294 ~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~y------sgg~Dg~ 367 (577)
T KOG0642|consen 294 DDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCY------SGGIDGT 367 (577)
T ss_pred hhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEE------eeccCce
Confidence 3566678888888888887 578999999932 110 111222333455555555422111 3688999
Q ss_pred EEEEEcCCCC-------CCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeec
Q 013871 120 VQIYACGKDL-------QSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL 192 (434)
Q Consensus 120 v~i~~~~~~~-------~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l 192 (434)
|+.|++|... +......+.+|...+..+.++..-..|+.+ +.|.+.+.| ...+...+.+..
T Consensus 368 I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llsc---s~DgTvr~w---------~~~~~~~~~f~~ 435 (577)
T KOG0642|consen 368 IRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSC---SSDGTVRLW---------EPTEESPCTFGE 435 (577)
T ss_pred eeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeee---cCCceEEee---------ccCCcCccccCC
Confidence 9999987310 011112344555555577777776665432 244444333 222221122222
Q ss_pred CC-CCCeEEEEECcCCCEEEEEEccCCCeEEEEecccce-eEEe---------CCcCeeEEEECCCCCeEEEEecCCCCC
Q 013871 193 RK-EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP-ILEL---------GSGPYNTVRWNPKGKFLCLAGFGNLPG 261 (434)
Q Consensus 193 ~~-~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~-~~~~---------~~~~~~~i~~SP~g~~l~~~~~~~~~g 261 (434)
.+ .+.-.++.+-...-...+ +.+.-+...+++.+... +..+ ....+|.+.+.|.+.+.+.+. .++
T Consensus 436 ~~e~g~Plsvd~~ss~~a~~~-~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~h---ed~ 511 (577)
T KOG0642|consen 436 PKEHGYPLSVDRTSSRPAHSL-ASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAH---EDR 511 (577)
T ss_pred ccccCCcceEeeccchhHhhh-hhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecc---cCC
Confidence 22 222234444322111221 11212222333333221 1111 124578899999998888776 668
Q ss_pred eEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc
Q 013871 262 DMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS 317 (434)
Q Consensus 262 ~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~ 317 (434)
.|+++|..+++.+....+| .++.+++.|.|-+|++++. |+.+++|...-+
T Consensus 512 ~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~------d~sv~l~kld~k 563 (577)
T KOG0642|consen 512 SIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSH------DGSVRLWKLDVK 563 (577)
T ss_pred ceecccccccccchheeeccceecceeecCCCceEEeecC------Cceeehhhccch
Confidence 9999999999999888777 5566999999999999999 999999998554
No 266
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.62 E-value=3.4e-05 Score=81.13 Aligned_cols=261 Identities=14% Similarity=0.161 Sum_probs=139.2
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCC
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFP 81 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~ 81 (434)
|.++.|--+++-|+... .++.|.+-|.++... .+.+. -..++-+.+||||++.|+...+....++...++.
T Consensus 71 i~s~~fl~d~~~i~v~~-----~~G~iilvd~et~~~--eivg~--vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~ 141 (1265)
T KOG1920|consen 71 IVSVQFLADTNSICVIT-----ALGDIILVDPETLEL--EIVGN--VDNGISAASWSPDEELLALITGRQTLLFMTKDFE 141 (1265)
T ss_pred eEEEEEecccceEEEEe-----cCCcEEEEcccccce--eeeee--ccCceEEEeecCCCcEEEEEeCCcEEEEEecccc
Confidence 45667777777666666 678888878777643 22221 1155668999999999999887666666666555
Q ss_pred CceeeeeecC-----CeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeE
Q 013871 82 KGILYRLRVP-----GVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGL 156 (434)
Q Consensus 82 ~~~~~~~~~~-----~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l 156 (434)
......++.+ ....+-|--.. ..+ . |..++....+.... .+.+.+. -.....+++.|--||++.
T Consensus 142 ~i~E~~L~~d~~~~sk~v~VGwGrke-Tqf----r---gs~gr~~~~~~~~~--ek~~~~~-~~~~~~~~IsWRgDg~~f 210 (1265)
T KOG1920|consen 142 PIAEKPLDADDERKSKFVNVGWGRKE-TQF----R---GSEGRQAARQKIEK--EKALEQI-EQDDHKTSISWRGDGEYF 210 (1265)
T ss_pred chhccccccccccccccceecccccc-eee----e---cchhhhcccccccc--cccccch-hhccCCceEEEccCCcEE
Confidence 4333333211 11112221100 000 0 00011000000000 0000001 012345689999999998
Q ss_pred EEEEEec-cc-ccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccC-CCeEEEEecccceeEE
Q 013871 157 LAVAQSD-VD-KTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFM-PASATIFNKKCRPILE 233 (434)
Q Consensus 157 ~~~~~~~-~d-~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~-~~~v~l~d~~~~~~~~ 233 (434)
++..-.. .+ +..+.| +..|.- ..+.-...+.=++++|-|.|..++.+.... +.+|.+|.-.+-.-.+
T Consensus 211 AVs~~~~~~~~RkirV~---------drEg~L-ns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~ 280 (1265)
T KOG1920|consen 211 AVSFVESETGTRKIRVY---------DREGAL-NSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGE 280 (1265)
T ss_pred EEEEEeccCCceeEEEe---------cccchh-hcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccc
Confidence 7743221 11 222222 222211 111111245557899999999999875443 3368888765433222
Q ss_pred e------CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEE--EEeeCCCceEEEECCCCC
Q 013871 234 L------GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQL--GTTRAECSVTSEWSPDGR 292 (434)
Q Consensus 234 ~------~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i--~~~~~~~~~~~~wspdg~ 292 (434)
| ....++.++|+-++..|++-........|++|-+.+..-. ..+.-+....+.|+|.-.
T Consensus 281 f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~~~W~p~~~ 347 (1265)
T KOG1920|consen 281 FVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKALLMWDPVTE 347 (1265)
T ss_pred cccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEeccccccccccCCCc
Confidence 2 2445899999999999998432223346999999887322 222223333378888543
No 267
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=98.58 E-value=1e-06 Score=81.40 Aligned_cols=138 Identities=14% Similarity=0.197 Sum_probs=110.1
Q ss_pred CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc------c-ceeEEe---CCcCeeEEEECCCCCeEEEEecCCCCCe
Q 013871 193 RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK------C-RPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGD 262 (434)
Q Consensus 193 ~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~------~-~~~~~~---~~~~~~~i~~SP~g~~l~~~~~~~~~g~ 262 (434)
.+.|.|++++||.++++|+ +|..|..+.+|++. . +++... |...|-|++|.-..++|.+|+ ..|+
T Consensus 54 ~H~GCiNAlqFS~N~~~L~--SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~---~~~~ 128 (609)
T KOG4227|consen 54 EHTGCINALQFSHNDRFLA--SGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGE---RWGT 128 (609)
T ss_pred hhccccceeeeccCCeEEe--ecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCC---Ccce
Confidence 3479999999999988888 78889999999874 2 344333 457788999999889999888 5679
Q ss_pred EEEEEccCCEEEEEeeCC----CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc-----eeeee-ecccceeeEE
Q 013871 263 MAFWDYVDGKQLGTTRAE----CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS-----LFFKK-MFDKLFQAEW 332 (434)
Q Consensus 263 i~iwd~~~~~~i~~~~~~----~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~-----~~~~~-~~~~~~~~~w 332 (434)
|...|+++.+.+..+.+. .+..+.-+|....|++.+. ++-|.|||.... ++.-. ....++.+.|
T Consensus 129 VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~------~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F 202 (609)
T KOG4227|consen 129 VIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTR------AKLVSFIDNRDRQNPISLVLPANSGKNFYTAEF 202 (609)
T ss_pred eEeeecccceeeeeecccCcccceeecccCCCCceEEEEec------CceEEEEeccCCCCCCceeeecCCCccceeeee
Confidence 999999999998888764 4566999999999999998 999999998443 32222 3347899999
Q ss_pred EcCCCCCCC
Q 013871 333 KPVSPDKFG 341 (434)
Q Consensus 333 ~p~~~~~~~ 341 (434)
+|..|.|+.
T Consensus 203 ~P~~P~Li~ 211 (609)
T KOG4227|consen 203 HPETPALIL 211 (609)
T ss_pred cCCCceeEE
Confidence 998887664
No 268
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.58 E-value=5.4e-06 Score=82.24 Aligned_cols=191 Identities=18% Similarity=0.292 Sum_probs=111.6
Q ss_pred CcceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCC
Q 013871 1 MLLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTD 79 (434)
Q Consensus 1 ~V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~ 79 (434)
.|.+|+|.-||+.++..- +|+.|.|=.+. |..+..-..+. .....+.||+|.+.+.+. .++++++||...
T Consensus 117 vV~SmsWn~dG~kIcIvY-----eDGavIVGsvd-GNRIwgKeLkg---~~l~hv~ws~D~~~~Lf~~ange~hlydnqg 187 (1189)
T KOG2041|consen 117 VVVSMSWNLDGTKICIVY-----EDGAVIVGSVD-GNRIWGKELKG---QLLAHVLWSEDLEQALFKKANGETHLYDNQG 187 (1189)
T ss_pred EEEEEEEcCCCcEEEEEE-----ccCCEEEEeec-cceecchhcch---heccceeecccHHHHHhhhcCCcEEEecccc
Confidence 377899999999998776 78988887654 43333211121 122257999999887776 568999999754
Q ss_pred -CCCceee--eee--------cCCeeEEEEeCCC-------CCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecc
Q 013871 80 -FPKGILY--RLR--------VPGVAAFEVSKAP-------GSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFR 141 (434)
Q Consensus 80 -~~~~~~~--~~~--------~~~v~~~~~sp~~-------~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~ 141 (434)
|...... .+. ...+.++.|..+. .+.+++.. ..|+++|+.-.+. ..++..-+.
T Consensus 188 nF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy-----~nGr~QiMR~eND--~~Pvv~dtg-- 258 (1189)
T KOG2041|consen 188 NFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCY-----ANGRMQIMRSEND--PEPVVVDTG-- 258 (1189)
T ss_pred cHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEE-----cCceehhhhhcCC--CCCeEEecc--
Confidence 2110000 000 1124445553321 34444332 2256777776654 344443333
Q ss_pred cceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEE
Q 013871 142 CSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVV 213 (434)
Q Consensus 142 ~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~ 213 (434)
..++...||++|..|+++.. +.|..... ..+.++++...|..-..+.+. ...|..++|...|-++|+.
T Consensus 259 m~~vgakWnh~G~vLAvcG~-~~da~~~~--d~n~v~Fysp~G~i~gtlkvp-g~~It~lsWEg~gLriA~A 326 (1189)
T KOG2041|consen 259 MKIVGAKWNHNGAVLAVCGN-DSDADEPT--DSNKVHFYSPYGHIVGTLKVP-GSCITGLSWEGTGLRIAIA 326 (1189)
T ss_pred cEeecceecCCCcEEEEccC-cccccCcc--ccceEEEeccchhheEEEecC-CceeeeeEEcCCceEEEEE
Confidence 45678899999998877532 22222211 223466666666554444443 4578889998877776653
No 269
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=98.51 E-value=2.4e-07 Score=92.96 Aligned_cols=257 Identities=11% Similarity=0.077 Sum_probs=164.9
Q ss_pred CCCCCeeeecCCCcEEEEecCC-eEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCC
Q 013871 49 KTTWPSIRFSSDEAVACRMATN-EIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGK 127 (434)
Q Consensus 49 ~~~~~~~~~S~d~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~ 127 (434)
...|-|..|...|.++.+++|+ -++||.+.+..+....+.|...|++++.+-. +.++| ....+-.|++|.++.
T Consensus 190 ~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~-n~~ia-----aaS~D~vIrvWrl~~ 263 (1113)
T KOG0644|consen 190 RNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSN-NTMIA-----AASNDKVIRVWRLPD 263 (1113)
T ss_pred hhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchh-hhhhh-----hcccCceEEEEecCC
Confidence 3455588999999999999876 8999998887666667778788888888765 34444 234556899999999
Q ss_pred CCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCC
Q 013871 128 DLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSG 207 (434)
Q Consensus 128 ~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg 207 (434)
+.++..+..|...++.+.|+|-- ++..|.+-..|.-. ++..---..........-+-++.|..++
T Consensus 264 ---~~pvsvLrghtgavtaiafsP~~-------sss~dgt~~~wd~r-----~~~~~y~prp~~~~~~~~~~s~~~~~~~ 328 (1113)
T KOG0644|consen 264 ---GAPVSVLRGHTGAVTAIAFSPRA-------SSSDDGTCRIWDAR-----LEPRIYVPRPLKFTEKDLVDSILFENNG 328 (1113)
T ss_pred ---CchHHHHhccccceeeeccCccc-------cCCCCCceEecccc-----ccccccCCCCCCcccccceeeeeccccc
Confidence 89999999999999999999853 22233333322211 0000000000011123456677787788
Q ss_pred CEEEEEEccCCCeEEEEecccceeEEeCCcCeeEEEECCCC-CeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceE
Q 013871 208 SEFAVVYGFMPASATIFNKKCRPILELGSGPYNTVRWNPKG-KFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVT 284 (434)
Q Consensus 208 ~~~av~~g~~~~~v~l~d~~~~~~~~~~~~~~~~i~~SP~g-~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~ 284 (434)
..|+ +|..++....|......-.+. ..+-+.++.+- .+.+++-++ -.+.+|++.++.+.+...+| .+..
T Consensus 329 ~~f~--Tgs~d~ea~n~e~~~l~~~~~---~lif~t~ssd~~~~~~~ar~~---~~~~vwnl~~g~l~H~l~ghsd~~yv 400 (1113)
T KOG0644|consen 329 DRFL--TGSRDGEARNHEFEQLAWRSN---LLIFVTRSSDLSSIVVTARND---HRLCVWNLYTGQLLHNLMGHSDEVYV 400 (1113)
T ss_pred cccc--cccCCcccccchhhHhhhhcc---ceEEEeccccccccceeeeee---eEeeeeecccchhhhhhcccccceee
Confidence 7888 688777777776542221111 11111222222 344445433 48899999999877776665 5556
Q ss_pred EEECCCCCEE-EEEEcCCceeeCCcEEEEee-cCceeee--eecccceeeEEEcCCCCCC
Q 013871 285 SEWSPDGRYF-MTATTAPRLQIDNGIKIFHH-NGSLFFK--KMFDKLFQAEWKPVSPDKF 340 (434)
Q Consensus 285 ~~wspdg~~l-~tas~~prl~~D~~i~iw~~-~g~~~~~--~~~~~~~~~~w~p~~~~~~ 340 (434)
+.++|-...+ ++++. |+..-|||+ .|..+.. ....++.+-.|++++..+.
T Consensus 401 Ld~Hpfn~ri~msag~------dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~ 454 (1113)
T KOG0644|consen 401 LDVHPFNPRIAMSAGY------DGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIA 454 (1113)
T ss_pred eeecCCCcHhhhhccC------CCceEeeecccCCcceeeecccceeeccccCCCCceEe
Confidence 9999865554 56666 999999998 4444333 3345688888988876543
No 270
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.49 E-value=0.00055 Score=62.69 Aligned_cols=223 Identities=14% Similarity=0.133 Sum_probs=126.6
Q ss_pred eeeecC-CCcEEEEe-cCCeEEEEeCCCCCCceeeeeecCCeeEEEEe-CCCCCeEEEEecCCCCCCceEEEEEcCCCCC
Q 013871 54 SIRFSS-DEAVACRM-ATNEIQFFDTTDFPKGILYRLRVPGVAAFEVS-KAPGSHVAVFVPESKGSPASVQIYACGKDLQ 130 (434)
Q Consensus 54 ~~~~S~-d~~~la~~-~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~s-p~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~ 130 (434)
.+.|.+ ++.++.+- ..++|+.|+.... ............+.+. ++ +..+.+- ...+.+++..+..
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~---~~~~~~~~~~~G~~~~~~~-g~l~v~~-------~~~~~~~d~~~g~- 71 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTG---EVEVIDLPGPNGMAFDRPD-GRLYVAD-------SGGIAVVDPDTGK- 71 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTT---EEEEEESSSEEEEEEECTT-SEEEEEE-------TTCEEEEETTTTE-
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCC---eEEEEecCCCceEEEEccC-CEEEEEE-------cCceEEEecCCCc-
Confidence 578988 66665555 4579999998763 2333455557778888 55 3333221 1233555655411
Q ss_pred CCceeeeee---cccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCC
Q 013871 131 SQPLARRSF---FRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSG 207 (434)
Q Consensus 131 ~~~i~~~~~---~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg 207 (434)
-+.+..... .......+...++|+ |. +++........ .....+|.++..+. .......-...+.++|+||+
T Consensus 72 ~~~~~~~~~~~~~~~~~ND~~vd~~G~-ly-~t~~~~~~~~~--~~~g~v~~~~~~~~--~~~~~~~~~~pNGi~~s~dg 145 (246)
T PF08450_consen 72 VTVLADLPDGGVPFNRPNDVAVDPDGN-LY-VTDSGGGGASG--IDPGSVYRIDPDGK--VTVVADGLGFPNGIAFSPDG 145 (246)
T ss_dssp EEEEEEEETTCSCTEEEEEEEE-TTS--EE-EEEECCBCTTC--GGSEEEEEEETTSE--EEEEEEEESSEEEEEEETTS
T ss_pred EEEEeeccCCCcccCCCceEEEcCCCC-EE-EEecCCCcccc--ccccceEEECCCCe--EEEEecCcccccceEECCcc
Confidence 122222210 122345678899998 33 33322211111 00035777776632 22222223456899999999
Q ss_pred CEEEEEEccCCCeEEEEecc--cc------eeEEeCCc--CeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEe
Q 013871 208 SEFAVVYGFMPASATIFNKK--CR------PILELGSG--PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTT 277 (434)
Q Consensus 208 ~~~av~~g~~~~~v~l~d~~--~~------~~~~~~~~--~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~ 277 (434)
+.|.++ ....+.|..|++. .. .+..+... ....+++..+|++.++.- + .+.|.++|.+ ++.+..+
T Consensus 146 ~~lyv~-ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~-~--~~~I~~~~p~-G~~~~~i 220 (246)
T PF08450_consen 146 KTLYVA-DSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADW-G--GGRIVVFDPD-GKLLREI 220 (246)
T ss_dssp SEEEEE-ETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEE-T--TTEEEEEETT-SCEEEEE
T ss_pred hheeec-ccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEc-C--CCEEEEECCC-ccEEEEE
Confidence 988874 5556789999874 22 12233333 356799999998666443 3 3799999988 7766655
Q ss_pred eC--CCceEEEE-CCCCCEEEEEEc
Q 013871 278 RA--ECSVTSEW-SPDGRYFMTATT 299 (434)
Q Consensus 278 ~~--~~~~~~~w-spdg~~l~tas~ 299 (434)
.- ..++.|+| -||...|...+.
T Consensus 221 ~~p~~~~t~~~fgg~~~~~L~vTta 245 (246)
T PF08450_consen 221 ELPVPRPTNCAFGGPDGKTLYVTTA 245 (246)
T ss_dssp E-SSSSEEEEEEESTTSSEEEEEEB
T ss_pred cCCCCCEEEEEEECCCCCEEEEEeC
Confidence 44 47778999 578777666553
No 271
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.49 E-value=0.00036 Score=68.72 Aligned_cols=184 Identities=18% Similarity=0.258 Sum_probs=110.9
Q ss_pred EEEECCCCCeEEEEEEecccccCcee------ecceeEEEEeeCCcc-eeeeecCCCCCeEEEEECc-CCCEEEEEEcc-
Q 013871 146 QLNWNRGSTGLLAVAQSDVDKTNQSY------YGESKLNYLTTDGTH-EGLVPLRKEGPVHDVQWSY-SGSEFAVVYGF- 216 (434)
Q Consensus 146 ~~~ws~~G~~l~~~~~~~~d~~~~~~------~g~~~l~~l~~~~~~-~~~v~l~~~~~i~~v~wsp-dg~~~av~~g~- 216 (434)
.+.+|+..+.+++-+....+. ...| ....+|+++...+.. +....+..++...++.||- +..++..+.-.
T Consensus 150 ~l~~N~~qDl~ivWW~~~~~e-~~PWsP~~~e~draNl~L~~~~~~klEvL~yirTE~dPl~~~Fs~~~~~qi~tVE~s~ 228 (545)
T PF11768_consen 150 HLSVNSSQDLVIVWWPSAQDE-VWPWSPISSEKDRANLHLLSCSGGKLEVLSYIRTENDPLDVEFSLNQPYQIHTVEQSI 228 (545)
T ss_pred eEeeccCCCEEEEEecCCCCC-cCCCCCccccchhccEEEEEecCCcEEEEEEEEecCCcEEEEccCCCCcEEEEEEEec
Confidence 556666666555444332211 1111 112356666665542 2222233355557788886 34444433211
Q ss_pred -CCC----eEEEEecccce-----eEEe-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceEE
Q 013871 217 -MPA----SATIFNKKCRP-----ILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTS 285 (434)
Q Consensus 217 -~~~----~v~l~d~~~~~-----~~~~-~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~~ 285 (434)
.++ ...+|+...+. +..+ ....+.++++||+...+++|- .||.|.+||...+.....-..--++.+
T Consensus 229 s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC---~DgSiiLyD~~~~~t~~~ka~~~P~~i 305 (545)
T PF11768_consen 229 SVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGC---EDGSIILYDTTRGVTLLAKAEFIPTLI 305 (545)
T ss_pred CCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEe---cCCeEEEEEcCCCeeeeeeecccceEE
Confidence 122 45667664332 3333 467889999999999999998 778999999887643333222356679
Q ss_pred EECCCCCEEEEEEcCCceeeCCcEEEEeecCce-----eee-----------e---ecccceeeEEEcCCCCC
Q 013871 286 EWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL-----FFK-----------K---MFDKLFQAEWKPVSPDK 339 (434)
Q Consensus 286 ~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~-----~~~-----------~---~~~~~~~~~w~p~~~~~ 339 (434)
+|+|+|..|++|+. .|.+.+||+.=.. +.+ . ....+..+.|.+.+...
T Consensus 306 aWHp~gai~~V~s~------qGelQ~FD~ALspi~~qLlsEd~~P~~~L~Ls~yf~~~~~L~~iqW~~~~~~~ 372 (545)
T PF11768_consen 306 AWHPDGAIFVVGSE------QGELQCFDMALSPIKMQLLSEDATPKSTLQLSKYFRVSSSLVHIQWAPAPQLS 372 (545)
T ss_pred EEcCCCcEEEEEcC------CceEEEEEeecCccceeeccccCCCccEEeeehhccCcchhheeEeccCCCcc
Confidence 99999999999998 8999999983221 111 1 12357888999776543
No 272
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.48 E-value=0.0003 Score=69.81 Aligned_cols=254 Identities=11% Similarity=0.042 Sum_probs=134.7
Q ss_pred ceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec------------CC
Q 013871 3 LLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA------------TN 70 (434)
Q Consensus 3 ~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~------------~~ 70 (434)
..+.+||||++|+..-...|.+...|+|.|+.+|+.+....... ... .+.|++|++.|.... ..
T Consensus 127 ~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~---~~~-~~~W~~d~~~~~y~~~~~~~~~~~~~~~~ 202 (414)
T PF02897_consen 127 GGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP---KFS-SVSWSDDGKGFFYTRFDEDQRTSDSGYPR 202 (414)
T ss_dssp EEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE---ESE-EEEECTTSSEEEEEECSTTTSS-CCGCCE
T ss_pred eeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc---ccc-eEEEeCCCCEEEEEEeCcccccccCCCCc
Confidence 36789999999997665555556789999999998766432221 111 389999988776652 22
Q ss_pred eEEEEeCCCCCCc--eeeeeecC-C-eeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCC-CCCceeeeee-cccce
Q 013871 71 EIQFFDTTDFPKG--ILYRLRVP-G-VAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDL-QSQPLARRSF-FRCST 144 (434)
Q Consensus 71 ~i~v~~~~~~~~~--~~~~~~~~-~-v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~-~~~~i~~~~~-~~~~~ 144 (434)
.|..|++.+.... .+...... . ...+..|++ +..+.+....... ...+.+.++.... .......... .....
T Consensus 203 ~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d-~~~l~i~~~~~~~-~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~ 280 (414)
T PF02897_consen 203 QVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKD-GRYLFISSSSGTS-ESEVYLLDLDDGGSPDAKPKLLSPREDGVE 280 (414)
T ss_dssp EEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TT-SSEEEEEEESSSS-EEEEEEEECCCTTTSS-SEEEEEESSSS-E
T ss_pred EEEEEECCCChHhCeeEEeecCCCcEEEEEEecCc-ccEEEEEEEcccc-CCeEEEEeccccCCCcCCcEEEeCCCCceE
Confidence 4788888764322 11222222 2 457788888 4555554443322 3667777776520 0112222221 12222
Q ss_pred eEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcce---eeeecCCCCCeEEEEECcCCCEEEEEEccCCC--
Q 013871 145 VQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHE---GLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPA-- 219 (434)
Q Consensus 145 ~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~---~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~-- 219 (434)
..+... |..+.+.+..+ .. ...|..+++..... ..+-+.....+.--.+...+.+|++.+ ..++
T Consensus 281 ~~v~~~--~~~~yi~Tn~~--a~------~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~-~~~~~~ 349 (414)
T PF02897_consen 281 YYVDHH--GDRLYILTNDD--AP------NGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSY-RENGSS 349 (414)
T ss_dssp EEEEEE--TTEEEEEE-TT---T------T-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEE-EETTEE
T ss_pred EEEEcc--CCEEEEeeCCC--CC------CcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEE-EECCcc
Confidence 222222 55565554311 11 11355555443321 112233233223333344567777643 3344
Q ss_pred eEEEEecc-cceeEEe---CCcCeeEEEECCCCCeEEE--EecCCCCCeEEEEEccCCEEE
Q 013871 220 SATIFNKK-CRPILEL---GSGPYNTVRWNPKGKFLCL--AGFGNLPGDMAFWDYVDGKQL 274 (434)
Q Consensus 220 ~v~l~d~~-~~~~~~~---~~~~~~~i~~SP~g~~l~~--~~~~~~~g~i~iwd~~~~~~i 274 (434)
.|.++|+. +.....+ ..+.+..+...+++..+.+ .++- ..++++-||+.+++..
T Consensus 350 ~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~-~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 350 RLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFT-TPPTVYRYDLATGELT 409 (414)
T ss_dssp EEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETT-EEEEEEEEETTTTCEE
T ss_pred EEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCC-CCCEEEEEECCCCCEE
Confidence 78899998 7666655 3444566666677764433 3332 4689999999988543
No 273
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=98.45 E-value=8.6e-06 Score=71.01 Aligned_cols=121 Identities=15% Similarity=0.187 Sum_probs=82.7
Q ss_pred eeeee-cCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-------cceeEE---------eCCcCeeEEEECCCCC
Q 013871 187 EGLVP-LRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-------CRPILE---------LGSGPYNTVRWNPKGK 249 (434)
Q Consensus 187 ~~~v~-l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~-------~~~~~~---------~~~~~~~~i~~SP~g~ 249 (434)
...++ -.+++||++++|.. . |.+ ++. |+.|+=|..+ ++.+.+ .+--.||++...|...
T Consensus 53 ~~iv~eqahdgpiy~~~f~d--~-~Ll-s~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~en 127 (325)
T KOG0649|consen 53 LKIVPEQAHDGPIYYLAFHD--D-FLL-SGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSEN 127 (325)
T ss_pred cceeeccccCCCeeeeeeeh--h-hee-ecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCC
Confidence 34444 23689999999983 2 333 233 4777766432 121111 1234689999999998
Q ss_pred eEEEEecCCCCCeEEEEEccCCEEEEEeeCC-CceE-EEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceeee
Q 013871 250 FLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-CSVT-SEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFK 321 (434)
Q Consensus 250 ~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-~~~~-~~wspdg~~l~tas~~prl~~D~~i~iw~~-~g~~~~~ 321 (434)
-|+++| -|+.++-||+++|+....+.+| +-++ +.--.....+++++. |+++||||. +++.+..
T Consensus 128 Si~~Ag---GD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~E------DGtvRvWd~kt~k~v~~ 193 (325)
T KOG0649|consen 128 SILFAG---GDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAE------DGTVRVWDTKTQKHVSM 193 (325)
T ss_pred cEEEec---CCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCC------CccEEEEeccccceeEE
Confidence 888888 4479999999999999999998 3333 444234456889999 999999999 4554433
No 274
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.44 E-value=5.3e-07 Score=85.07 Aligned_cols=173 Identities=14% Similarity=0.198 Sum_probs=116.5
Q ss_pred CCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecC
Q 013871 114 KGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR 193 (434)
Q Consensus 114 ~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~ 193 (434)
+|..|.+-.+|..+ ....+.+.. ...+..+.|-...+++++. + +.| +|.++-.|. ..--+.
T Consensus 147 gGrKGHlAa~Dw~t---~~L~~Ei~v-~Etv~Dv~~LHneq~~AVA-Q-------K~y-----~yvYD~~Gt--ElHClk 207 (545)
T KOG1272|consen 147 GGRKGHLAAFDWVT---KKLHFEINV-METVRDVTFLHNEQFFAVA-Q-------KKY-----VYVYDNNGT--ELHCLK 207 (545)
T ss_pred cCCccceeeeeccc---ceeeeeeeh-hhhhhhhhhhcchHHHHhh-h-------hce-----EEEecCCCc--EEeehh
Confidence 45667777777655 333333322 2233455666655655442 0 111 344443332 122233
Q ss_pred CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-ceeEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccC
Q 013871 194 KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD 270 (434)
Q Consensus 194 ~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~-~~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~ 270 (434)
...+|..+.|-|-- |.++++++.+-+..-|+.. +.+.++ ..+.+..+.-+|..-.+.+|. .+|+|.+|....
T Consensus 208 ~~~~v~rLeFLPyH--fLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~Gh---snGtVSlWSP~s 282 (545)
T KOG1272|consen 208 RHIRVARLEFLPYH--FLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGH---SNGTVSLWSPNS 282 (545)
T ss_pred hcCchhhhcccchh--heeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcC---CCceEEecCCCC
Confidence 35688889999854 5555788888999999974 444444 567777888899888888776 668999999998
Q ss_pred CEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecC
Q 013871 271 GKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG 316 (434)
Q Consensus 271 ~~~i~~~~~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g 316 (434)
.+.+..+..| .+..+++.++|+|++|++. |+.++|||+..
T Consensus 283 kePLvKiLcH~g~V~siAv~~~G~YMaTtG~------Dr~~kIWDlR~ 324 (545)
T KOG1272|consen 283 KEPLVKILCHRGPVSSIAVDRGGRYMATTGL------DRKVKIWDLRN 324 (545)
T ss_pred cchHHHHHhcCCCcceEEECCCCcEEeeccc------ccceeEeeecc
Confidence 8776666555 5666999999999999999 99999999855
No 275
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.41 E-value=3e-05 Score=77.12 Aligned_cols=261 Identities=14% Similarity=0.155 Sum_probs=152.0
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcE------E---------EEEeecCcCCCCCCeeeecCCCcEEEE
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEA------V---------YQLFQKNMTKTTWPSIRFSSDEAVACR 66 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~------~---------~~~~~~~~~~~~~~~~~~S~d~~~la~ 66 (434)
..|++|.....|++.++ .|+-++|-.+.+... + +++.+ |...+..+.|..+.+.|.+
T Consensus 17 L~c~~WNke~gyIAcgG-----~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeG---H~~sV~vvTWNe~~QKLTt 88 (1189)
T KOG2041|consen 17 LHCAEWNKESGYIACGG-----ADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEG---HNASVMVVTWNENNQKLTT 88 (1189)
T ss_pred EEEEEEcccCCeEEecc-----ccceeEEEEccccCCcccccccccccccchhhhhcc---CcceEEEEEeccccccccc
Confidence 35888999999999988 899999988754321 0 12222 4477878999999988888
Q ss_pred e-cCCeEEEEeCCCCCCcee--eeeecCCeeEEEEeCCCCCeEEEEecCCCCCCc---eEEEEEcCCCCCCCceeeeeec
Q 013871 67 M-ATNEIQFFDTTDFPKGIL--YRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPA---SVQIYACGKDLQSQPLARRSFF 140 (434)
Q Consensus 67 ~-~~~~i~v~~~~~~~~~~~--~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~---~v~i~~~~~~~~~~~i~~~~~~ 140 (434)
+ .+|-|.||-+-..+-... ..-...-|.+++|..+ +..|++...+..-.-| --+||.-.- -
T Consensus 89 SDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~d-G~kIcIvYeDGavIVGsvdGNRIwgKeL------------k 155 (1189)
T KOG2041|consen 89 SDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLD-GTKICIVYEDGAVIVGSVDGNRIWGKEL------------K 155 (1189)
T ss_pred cCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCC-CcEEEEEEccCCEEEEeeccceecchhc------------c
Confidence 7 467999998754321100 0111234789999998 4555554333210001 114554322 1
Q ss_pred ccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcce------eeeecC-----CCCCeEEEEEC-----
Q 013871 141 RCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHE------GLVPLR-----KEGPVHDVQWS----- 204 (434)
Q Consensus 141 ~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~------~~v~l~-----~~~~i~~v~ws----- 204 (434)
...-..+.|++|...+++.-. .|+..|| +..|.+. +.+... ....|-.+.|.
T Consensus 156 g~~l~hv~ws~D~~~~Lf~~a----------nge~hly--dnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~ 223 (1189)
T KOG2041|consen 156 GQLLAHVLWSEDLEQALFKKA----------NGETHLY--DNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQ 223 (1189)
T ss_pred hheccceeecccHHHHHhhhc----------CCcEEEe--cccccHHHhhhhceEEeeeeeecCCCccccceeeccCccc
Confidence 112236789998776654211 0322222 2222221 222111 01234556664
Q ss_pred ---cCCCEEEEEEccCCCeEEEEecc--cceeEEeCCcCeeEEEECCCCCeEEEEecCCC-----C-CeEEEEEccCCEE
Q 013871 205 ---YSGSEFAVVYGFMPASATIFNKK--CRPILELGSGPYNTVRWNPKGKFLCLAGFGNL-----P-GDMAFWDYVDGKQ 273 (434)
Q Consensus 205 ---pdg~~~av~~g~~~~~v~l~d~~--~~~~~~~~~~~~~~i~~SP~g~~l~~~~~~~~-----~-g~i~iwd~~~~~~ 273 (434)
||...|+|++. .|.+.|.... .+++.--..-.+..+.|+|+|..|+++|++.. + ..|.||.. -|+.
T Consensus 224 ~v~pdrP~lavcy~--nGr~QiMR~eND~~Pvv~dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp-~G~i 300 (1189)
T KOG2041|consen 224 PVPPDRPRLAVCYA--NGRMQIMRSENDPEPVVVDTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP-YGHI 300 (1189)
T ss_pred cCCCCCCEEEEEEc--CceehhhhhcCCCCCeEEecccEeecceecCCCcEEEEccCcccccCccccceEEEecc-chhh
Confidence 57778887654 5666665332 23322222355677899999999999997641 1 24555542 3566
Q ss_pred EEEeeCC--CceEEEECCCCCEEEEEE
Q 013871 274 LGTTRAE--CSVTSEWSPDGRYFMTAT 298 (434)
Q Consensus 274 i~~~~~~--~~~~~~wspdg~~l~tas 298 (434)
+.+++.+ .++.++|-..|-.++.|.
T Consensus 301 ~gtlkvpg~~It~lsWEg~gLriA~Av 327 (1189)
T KOG2041|consen 301 VGTLKVPGSCITGLSWEGTGLRIAIAV 327 (1189)
T ss_pred eEEEecCCceeeeeEEcCCceEEEEEe
Confidence 6666544 677799998888888776
No 276
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.35 E-value=6.6e-05 Score=69.81 Aligned_cols=200 Identities=13% Similarity=0.170 Sum_probs=118.6
Q ss_pred EEEEEecCCCCCCCcEEEEEcCCCc----EEEEEeecCcCCCCCCeeeecCCC-cEEEEec-C--CeEEEEeCCCCCCce
Q 013871 13 IIQTFQKSSTPQEKNVILWKTETGE----AVYQLFQKNMTKTTWPSIRFSSDE-AVACRMA-T--NEIQFFDTTDFPKGI 84 (434)
Q Consensus 13 ~L~t~~~~~~~~d~~v~iWd~~~g~----~~~~~~~~~~~~~~~~~~~~S~d~-~~la~~~-~--~~i~v~~~~~~~~~~ 84 (434)
+|+|+- .++++.+|..+.+. .+..+... ...-.+.=++.. .++|+++ . +.+.|||+.... .
T Consensus 117 ~Litc~-----~sG~l~~~~~k~~d~hss~l~~la~g----~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~--q 185 (412)
T KOG3881|consen 117 TLITCV-----SSGNLQVRHDKSGDLHSSKLIKLATG----PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSK--Q 185 (412)
T ss_pred EEEEEe-----cCCcEEEEeccCCccccccceeeecC----CceeeeccCCCCCceEecCchhcccceeeeecccce--e
Confidence 455555 67999999988553 22222222 122134445544 4555553 3 689999987642 1
Q ss_pred eee----------eecC-CeeEEEEeCCCC-CeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCC
Q 013871 85 LYR----------LRVP-GVAAFEVSKAPG-SHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRG 152 (434)
Q Consensus 85 ~~~----------~~~~-~v~~~~~sp~~~-~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~ 152 (434)
... +.++ -++++.|-|+.. ..++. ...-+.|++|+.... .+|+.+..+......++...|+
T Consensus 186 iw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat-----~T~~hqvR~YDt~~q--RRPV~~fd~~E~~is~~~l~p~ 258 (412)
T KOG3881|consen 186 IWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFAT-----ITRYHQVRLYDTRHQ--RRPVAQFDFLENPISSTGLTPS 258 (412)
T ss_pred eeeccCCCCccccceeeeeeccceecCCCCCceEEE-----EecceeEEEecCccc--CcceeEeccccCcceeeeecCC
Confidence 111 1111 244555555421 22332 234468999999754 8999999999889999999999
Q ss_pred CCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecC-CCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccce-
Q 013871 153 STGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR-KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP- 230 (434)
Q Consensus 153 G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~-~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~- 230 (434)
|+.|++.. ..+ .|..++..+.......+. -.|.|.++.-+|++..++ +++-|.-++|||++...
T Consensus 259 gn~Iy~gn-----~~g-------~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~la--s~GLDRyvRIhD~ktrkl 324 (412)
T KOG3881|consen 259 GNFIYTGN-----TKG-------QLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLA--SCGLDRYVRIHDIKTRKL 324 (412)
T ss_pred CcEEEEec-----ccc-------hhheecccCceeeccccCCccCCcceEEEcCCCceEE--eeccceeEEEeecccchh
Confidence 99876532 111 133333333321111122 168999999999998888 56779999999998743
Q ss_pred eEEe-CCcCeeEEEE
Q 013871 231 ILEL-GSGPYNTVRW 244 (434)
Q Consensus 231 ~~~~-~~~~~~~i~~ 244 (434)
++.. -....|+|.+
T Consensus 325 l~kvYvKs~lt~il~ 339 (412)
T KOG3881|consen 325 LHKVYVKSRLTFILL 339 (412)
T ss_pred hhhhhhhccccEEEe
Confidence 3322 3344444443
No 277
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=98.34 E-value=1.3e-05 Score=76.28 Aligned_cols=274 Identities=12% Similarity=0.078 Sum_probs=156.2
Q ss_pred CCCCCCeeeecCCCcEEEEecCC-eEEEEeCCCCCCc-eeeeeecCCeeEEEEeCCCC-CeEEEEecCCCCCCceEEEEE
Q 013871 48 TKTTWPSIRFSSDEAVACRMATN-EIQFFDTTDFPKG-ILYRLRVPGVAAFEVSKAPG-SHVAVFVPESKGSPASVQIYA 124 (434)
Q Consensus 48 ~~~~~~~~~~S~d~~~la~~~~~-~i~v~~~~~~~~~-~~~~~~~~~v~~~~~sp~~~-~~ia~~~~~~~~~~~~v~i~~ 124 (434)
|...+..+.|...|..|++++++ .|.+||....... .....|..+|-.-.|-|..+ ..++ ..+.++.|++-.
T Consensus 141 H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~-----~~s~dgqvr~s~ 215 (559)
T KOG1334|consen 141 HKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIV-----TSSRDGQVRVSE 215 (559)
T ss_pred CCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCce-----eccccCceeeee
Confidence 45677789999999999999875 9999997653321 11223344454445555432 2232 345667777776
Q ss_pred cCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeC--CcceeeeecCC-C---CCe
Q 013871 125 CGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTD--GTHEGLVPLRK-E---GPV 198 (434)
Q Consensus 125 ~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~--~~~~~~v~l~~-~---~~i 198 (434)
+.............-|...+..+.--|+..+-+..+.. |.. +..+++. ......+.-.. + -..
T Consensus 216 i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~ge--D~~---------v~~~Dlr~~~pa~~~~cr~~~~~~~v~L 284 (559)
T KOG1334|consen 216 ILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGE--DAV---------VFHIDLRQDVPAEKFVCREADEKERVGL 284 (559)
T ss_pred eccccceecceecccccCccceeeecCCCCCccccccc--ccc---------eeeeeeccCCccceeeeeccCCccceee
Confidence 65421111122333345555555555554443332211 111 1222211 11111111111 1 246
Q ss_pred EEEEECcCCC-EEEEEEccCCCeEEEEecc-------cceeEEe--------CCcCeeEEEECCCCCeEEEEecCCCCCe
Q 013871 199 HDVQWSYSGS-EFAVVYGFMPASATIFNKK-------CRPILEL--------GSGPYNTVRWNPKGKFLCLAGFGNLPGD 262 (434)
Q Consensus 199 ~~v~wspdg~-~~av~~g~~~~~v~l~d~~-------~~~~~~~--------~~~~~~~i~~SP~g~~l~~~~~~~~~g~ 262 (434)
++++..|-.. +|+| |.+|.-+++||.+ +..+.+| ..-.|++++||.+|.-|+++= .+-.
T Consensus 285 ~~Ia~~P~nt~~faV--gG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSY---nDe~ 359 (559)
T KOG1334|consen 285 YTIAVDPRNTNEFAV--GGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASY---NDED 359 (559)
T ss_pred eeEecCCCCcccccc--CChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeee---cccc
Confidence 7889998654 7885 8889999999875 2223333 134578999997776555444 2347
Q ss_pred EEEEEcc--CC----------EEEEE-eeCC-Cc-e--E-EEECCCCCEEEEEEcCCceeeCCcEEEEeecCc-eeeee-
Q 013871 263 MAFWDYV--DG----------KQLGT-TRAE-CS-V--T-SEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS-LFFKK- 322 (434)
Q Consensus 263 i~iwd~~--~~----------~~i~~-~~~~-~~-~--~-~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~-~~~~~- 322 (434)
|+++... .| ..+.. +++| +. + . --|-|..+|+++|+. =|.|.||+-.+. ++..+
T Consensus 360 IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSD------CGhIFiW~K~t~eii~~Me 433 (559)
T KOG1334|consen 360 IYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSD------CGHIFIWDKKTGEIIRFME 433 (559)
T ss_pred eEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCc------cceEEEEecchhHHHHHhh
Confidence 9998533 22 12222 5566 11 1 1 468999999999997 688999998654 43332
Q ss_pred -ecccceeeEEEcCCCCCCCCc-hhhhh
Q 013871 323 -MFDKLFQAEWKPVSPDKFGDI-SELIK 348 (434)
Q Consensus 323 -~~~~~~~~~w~p~~~~~~~~~-~~~~~ 348 (434)
....+.++.=+|.-|-|.+.+ .+.+|
T Consensus 434 gDr~VVNCLEpHP~~PvLAsSGid~DVK 461 (559)
T KOG1334|consen 434 GDRHVVNCLEPHPHLPVLASSGIDHDVK 461 (559)
T ss_pred cccceEeccCCCCCCchhhccCCcccee
Confidence 334678888888888777764 44443
No 278
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.31 E-value=0.0012 Score=63.00 Aligned_cols=255 Identities=14% Similarity=0.088 Sum_probs=117.4
Q ss_pred EcCCCcEEEEEeecCc--CCCCCCeeeecCCCcEEEEecC--C--eEEEEeCCCCCCceeeeeec---CCeeEEEEeCCC
Q 013871 32 KTETGEAVYQLFQKNM--TKTTWPSIRFSSDEAVACRMAT--N--EIQFFDTTDFPKGILYRLRV---PGVAAFEVSKAP 102 (434)
Q Consensus 32 d~~~g~~~~~~~~~~~--~~~~~~~~~~S~d~~~la~~~~--~--~i~v~~~~~~~~~~~~~~~~---~~v~~~~~sp~~ 102 (434)
|..||..|.++..... |..=...-+|++||+.|++.++ + ++.+.|+.+.. ..++.. .+.....++|+
T Consensus 16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~---i~QLTdg~g~~~~g~~~s~~- 91 (386)
T PF14583_consen 16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGE---ITQLTDGPGDNTFGGFLSPD- 91 (386)
T ss_dssp -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-E---EEE---SS-B-TTT-EE-TT-
T ss_pred CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCE---EEECccCCCCCccceEEecC-
Confidence 6678877777765432 1111224579999988887643 3 77777877743 333332 22334567777
Q ss_pred CCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEE--CCCCCeEEEEEEecccccCce-e-------e
Q 013871 103 GSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNW--NRGSTGLLAVAQSDVDKTNQS-Y-------Y 172 (434)
Q Consensus 103 ~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~w--s~~G~~l~~~~~~~~d~~~~~-~-------~ 172 (434)
+..+.++..+ ..++..++.+ .+......+...-.-...| +.+++.++.+.....|..... | .
T Consensus 92 ~~~~~Yv~~~-----~~l~~vdL~T---~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~ 163 (386)
T PF14583_consen 92 DRALYYVKNG-----RSLRRVDLDT---LEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYE 163 (386)
T ss_dssp SSEEEEEETT-----TEEEEEETTT-----EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHH
T ss_pred CCeEEEEECC-----CeEEEEECCc---CcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHh
Confidence 4444333222 2556666655 2222222222222223455 567777665544433332111 1 0
Q ss_pred --cceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEE-EEEE-ccC---CCeEEEEecccceeEEeCCc----CeeE
Q 013871 173 --GESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEF-AVVY-GFM---PASATIFNKKCRPILELGSG----PYNT 241 (434)
Q Consensus 173 --g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~-av~~-g~~---~~~v~l~d~~~~~~~~~~~~----~~~~ 241 (434)
-...|+.+++.++ +..+.+....-+..+.|||....+ ++|. |.. +.+|.+.|..+.....++.. .+.-
T Consensus 164 a~p~~~i~~idl~tG-~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gH 242 (386)
T PF14583_consen 164 ARPHCRIFTIDLKTG-ERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGH 242 (386)
T ss_dssp C---EEEEEEETTT---EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEE
T ss_pred hCCCceEEEEECCCC-ceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCccccc
Confidence 1235677777765 444445556678899999965544 4433 222 23566667666555555322 2233
Q ss_pred EEECCCCCeEEEEec--CCCCCeEEEEEccCCEEEEEeeCCCceEEEECCCCCEEEEEEc
Q 013871 242 VRWNPKGKFLCLAGF--GNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATT 299 (434)
Q Consensus 242 i~~SP~g~~l~~~~~--~~~~g~i~iwd~~~~~~i~~~~~~~~~~~~wspdg~~l~tas~ 299 (434)
=.|+|||..|..-+. +..+..|.-+|..+++.......+..+.+--++||+.++-=++
T Consensus 243 Efw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~p~~~H~~ss~Dg~L~vGDG~ 302 (386)
T PF14583_consen 243 EFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEMPWCSHFMSSPDGKLFVGDGG 302 (386)
T ss_dssp EEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE-SEEEEEE-TTSSEEEEEE-
T ss_pred ccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeCCceeeeEEcCCCCEEEecCC
Confidence 469999996665332 2234467778888886544455556667888999998865444
No 279
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.30 E-value=0.0014 Score=61.43 Aligned_cols=252 Identities=13% Similarity=0.137 Sum_probs=133.2
Q ss_pred eEEecCCCcEEEEEecCCC-----CCCCcEEEEEcCCCcEEEEEeecC---cC-CCCCCeeeecCCCcEEEEec---CCe
Q 013871 4 LLTCLRVGLIIQTFQKSST-----PQEKNVILWKTETGEAVYQLFQKN---MT-KTTWPSIRFSSDEAVACRMA---TNE 71 (434)
Q Consensus 4 ~l~fSP~g~~L~t~~~~~~-----~~d~~v~iWd~~~g~~~~~~~~~~---~~-~~~~~~~~~S~d~~~la~~~---~~~ 71 (434)
.+..||||+.+.+.+-+.. .-+.-|.+||..|-.....+.-.. .. ...-..++.|.||+++.... ...
T Consensus 40 ~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~S 119 (342)
T PF06433_consen 40 NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATS 119 (342)
T ss_dssp EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEE
T ss_pred ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCe
Confidence 4678999999997653211 123569999999988776544321 10 01112578999999998763 258
Q ss_pred EEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeee-eeccccee----E
Q 013871 72 IQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARR-SFFRCSTV----Q 146 (434)
Q Consensus 72 i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~-~~~~~~~~----~ 146 (434)
|.|-|+.... ....+..++...+--++. ..+... ..+|.+....+... +++.... .+|..+.- .
T Consensus 120 VtVVDl~~~k--vv~ei~~PGC~~iyP~~~--~~F~~l-----C~DGsl~~v~Ld~~--Gk~~~~~t~~F~~~~dp~f~~ 188 (342)
T PF06433_consen 120 VTVVDLAAKK--VVGEIDTPGCWLIYPSGN--RGFSML-----CGDGSLLTVTLDAD--GKEAQKSTKVFDPDDDPLFEH 188 (342)
T ss_dssp EEEEETTTTE--EEEEEEGTSEEEEEEEET--TEEEEE-----ETTSCEEEEEETST--SSEEEEEEEESSTTTS-B-S-
T ss_pred EEEEECCCCc--eeeeecCCCEEEEEecCC--CceEEE-----ecCCceEEEEECCC--CCEeEeeccccCCCCcccccc
Confidence 9999987732 455677777666544432 112111 22345555555532 3332111 12211110 1
Q ss_pred EEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeee---ecC---------CCCCeEEEEECcCCCEEEEE-
Q 013871 147 LNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLV---PLR---------KEGPVHDVQWSYSGSEFAVV- 213 (434)
Q Consensus 147 ~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v---~l~---------~~~~i~~v~wspdg~~~av~- 213 (434)
-.+...+..+++. +|.| .+|.++..+...... .+- ..|.-.-+++++..++|.|.
T Consensus 189 ~~~~~~~~~~~F~----------Sy~G--~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLM 256 (342)
T PF06433_consen 189 PAYSRDGGRLYFV----------SYEG--NVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLM 256 (342)
T ss_dssp -EEETTTTEEEEE----------BTTS--EEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEE
T ss_pred cceECCCCeEEEE----------ecCC--EEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEe
Confidence 1122233333322 2333 356655555421111 110 02444567888766555543
Q ss_pred EccCCC-------eEEEEecccce-eEEeC-CcCeeEEEECCCCC-eEEEEecCCCCCeEEEEEccCCEEEEEeeCC
Q 013871 214 YGFMPA-------SATIFNKKCRP-ILELG-SGPYNTVRWNPKGK-FLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE 280 (434)
Q Consensus 214 ~g~~~~-------~v~l~d~~~~~-~~~~~-~~~~~~i~~SP~g~-~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~ 280 (434)
....++ .|.+||++..+ +..++ ..++++|..|.+.+ +|+.... .+|.|.+||..+++.+.....-
T Consensus 257 h~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~--~~~~l~v~D~~tGk~~~~~~~l 331 (342)
T PF06433_consen 257 HQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSA--GDGTLDVYDAATGKLVRSIEQL 331 (342)
T ss_dssp EE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEET--TTTEEEEEETTT--EEEEE---
T ss_pred cCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcC--CCCeEEEEeCcCCcEEeehhcc
Confidence 221111 68888997544 44554 56788999999998 4443332 3479999999999999888753
No 280
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.28 E-value=3.5e-06 Score=91.21 Aligned_cols=189 Identities=16% Similarity=0.189 Sum_probs=125.1
Q ss_pred eeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEeccc
Q 013871 86 YRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVD 165 (434)
Q Consensus 86 ~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d 165 (434)
.+.++++|..+.=+|....++ +++.++.|++|.-... .+.++-++...+.+..+.++.+|+..-+ .+.|
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yl------tgs~dgsv~~~~w~~~--~~v~~~rt~g~s~vtr~~f~~qGnk~~i---~d~d 2272 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYL------TGSQDGSVRMFEWGHG--QQVVCFRTAGNSRVTRSRFNHQGNKFGI---VDGD 2272 (2439)
T ss_pred eecccCceeeecCCCCCceEE------ecCCCceEEEEeccCC--CeEEEeeccCcchhhhhhhcccCCceee---eccC
Confidence 344566777776666522222 3567889999988662 3344455555667778889999987544 2233
Q ss_pred ccCceeecceeEEEEeeCCcceeeeec--CCCCCeEEEEECcCCCEEEEEEcc--CCCeEEEEecc----cceeEEeCCc
Q 013871 166 KTNQSYYGESKLNYLTTDGTHEGLVPL--RKEGPVHDVQWSYSGSEFAVVYGF--MPASATIFNKK----CRPILELGSG 237 (434)
Q Consensus 166 ~~~~~~~g~~~l~~l~~~~~~~~~v~l--~~~~~i~~v~wspdg~~~av~~g~--~~~~v~l~d~~----~~~~~~~~~~ 237 (434)
.... +|... ...+.- -++...+++.|-. ..++- .|. .++.+.+||.- ...++..|.+
T Consensus 2273 g~l~-------l~q~~-----pk~~~s~qchnk~~~Df~Fi~--s~~~t-ag~s~d~~n~~lwDtl~~~~~s~v~~~H~~ 2337 (2439)
T KOG1064|consen 2273 GDLS-------LWQAS-----PKPYTSWQCHNKALSDFRFIG--SLLAT-AGRSSDNRNVCLWDTLLPPMNSLVHTCHDG 2337 (2439)
T ss_pred Ccee-------ecccC-----CcceeccccCCccccceeeee--hhhhc-cccCCCCCcccchhcccCcccceeeeecCC
Confidence 3222 22221 001100 0234556666654 22332 222 34589999973 3346677999
Q ss_pred CeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc
Q 013871 238 PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS 317 (434)
Q Consensus 238 ~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~ 317 (434)
..++++|-|.-++|++|| .+|.|++||++..+++++++. |. ...+|++++. .+.++||++++-
T Consensus 2338 gaT~l~~~P~~qllisgg---r~G~v~l~D~rqrql~h~~~~-------~~-~~~~f~~~ss------~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2338 GATVLAYAPKHQLLISGG---RKGEVCLFDIRQRQLRHTFQA-------LD-TREYFVTGSS------EGNIKIWRLSEF 2400 (2439)
T ss_pred CceEEEEcCcceEEEecC---CcCcEEEeehHHHHHHHHhhh-------hh-hhheeeccCc------ccceEEEEcccc
Confidence 999999999999999998 668999999999888887765 55 5678999998 999999999775
No 281
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.25 E-value=7.5e-06 Score=78.99 Aligned_cols=139 Identities=13% Similarity=0.182 Sum_probs=102.1
Q ss_pred CCCCeEEEEECcCCCEEEEEEccCCCeEEEEec-ccceeEEe---CCcCeeEEEECCCC--CeEEEEecCCCCCeEEEEE
Q 013871 194 KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNK-KCRPILEL---GSGPYNTVRWNPKG--KFLCLAGFGNLPGDMAFWD 267 (434)
Q Consensus 194 ~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~-~~~~~~~~---~~~~~~~i~~SP~g--~~l~~~~~~~~~g~i~iwd 267 (434)
+.|.|++++|+.||..|+ +|+.|-.+.|||. +.+.++.+ |...|-++.|-|.. +++++|+.| ..|+++|
T Consensus 49 H~GCVN~LeWn~dG~lL~--SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgD---k~i~lfd 123 (758)
T KOG1310|consen 49 HTGCVNCLEWNADGELLA--SGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGD---KLIKLFD 123 (758)
T ss_pred ccceecceeecCCCCEEe--ecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCc---ceEEEEe
Confidence 589999999999999999 7999999999997 45555655 67778899999954 466666633 5999999
Q ss_pred ccCC----------EEEEEeeCC--CceEEEECCCC-CEEEEEEcCCceeeCCcEEEEeecCc--e---------eeee-
Q 013871 268 YVDG----------KQLGTTRAE--CSVTSEWSPDG-RYFMTATTAPRLQIDNGIKIFHHNGS--L---------FFKK- 322 (434)
Q Consensus 268 ~~~~----------~~i~~~~~~--~~~~~~wspdg-~~l~tas~~prl~~D~~i~iw~~~g~--~---------~~~~- 322 (434)
+.+. +.+..+..| .+-.++-.|++ ..|.+|+. ||+|+-+|+... + +...
T Consensus 124 l~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasE------DGtirQyDiREph~c~p~~~~~~~l~ny~ 197 (758)
T KOG1310|consen 124 LDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASE------DGTIRQYDIREPHVCNPDEDCPSILVNYN 197 (758)
T ss_pred cccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecC------CcceeeecccCCccCCccccccHHHHHhc
Confidence 9852 223333333 33348889999 67888888 999999998441 1 1111
Q ss_pred -ecccceeeEEEcCCCCCCCCc
Q 013871 323 -MFDKLFQAEWKPVSPDKFGDI 343 (434)
Q Consensus 323 -~~~~~~~~~w~p~~~~~~~~~ 343 (434)
..-++.++.-+|..+.+|.-+
T Consensus 198 ~~lielk~ltisp~rp~~laVG 219 (758)
T KOG1310|consen 198 PQLIELKCLTISPSRPYYLAVG 219 (758)
T ss_pred hhhheeeeeeecCCCCceEEec
Confidence 223788999999988877643
No 282
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.23 E-value=0.00028 Score=74.57 Aligned_cols=258 Identities=14% Similarity=0.278 Sum_probs=138.1
Q ss_pred CCCeeeecCCCcEEE-EecCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCC
Q 013871 51 TWPSIRFSSDEAVAC-RMATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDL 129 (434)
Q Consensus 51 ~~~~~~~S~d~~~la-~~~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~ 129 (434)
.+.+++|-.|..-++ ....|.|.+-|...... ........+|...+|||+ ...+++.... .++-++.. +
T Consensus 70 ~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~-eivg~vd~GI~aaswS~D-ee~l~liT~~-----~tll~mT~-~-- 139 (1265)
T KOG1920|consen 70 EIVSVQFLADTNSICVITALGDIILVDPETLEL-EIVGNVDNGISAASWSPD-EELLALITGR-----QTLLFMTK-D-- 139 (1265)
T ss_pred ceEEEEEecccceEEEEecCCcEEEEcccccce-eeeeeccCceEEEeecCC-CcEEEEEeCC-----cEEEEEec-c--
Confidence 344777777665444 44678888887766432 223333458999999999 5555554321 12332222 1
Q ss_pred CCCceeeeee-----cccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeee-cCCCCCeEEEEE
Q 013871 130 QSQPLARRSF-----FRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVP-LRKEGPVHDVQW 203 (434)
Q Consensus 130 ~~~~i~~~~~-----~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~-l~~~~~i~~v~w 203 (434)
-.++..+.. -....+.+-|....+.+-. +.++---++. + ..+.... .+....=.+|.|
T Consensus 140 -f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrg-------s~gr~~~~~~-~-------~~ek~~~~~~~~~~~~~IsW 203 (1265)
T KOG1920|consen 140 -FEPIAEKPLDADDERKSKFVNVGWGRKETQFRG-------SEGRQAARQK-I-------EKEKALEQIEQDDHKTSISW 203 (1265)
T ss_pred -ccchhccccccccccccccceecccccceeeec-------chhhhccccc-c-------cccccccchhhccCCceEEE
Confidence 123332222 1122234444433222100 0000000000 0 0000000 000122246999
Q ss_pred CcCCCEEEEEE---ccCCCeEEEEecccceeEEe---CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC---EEE
Q 013871 204 SYSGSEFAVVY---GFMPASATIFNKKCRPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG---KQL 274 (434)
Q Consensus 204 spdg~~~av~~---g~~~~~v~l~d~~~~~~~~~---~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~---~~i 274 (434)
--||.+|||.+ .....++++||.++. +... ..+.-.+++|-|.|.++++-.....+++|.|+..+.. +..
T Consensus 204 RgDg~~fAVs~~~~~~~~RkirV~drEg~-Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~ 282 (1265)
T KOG1920|consen 204 RGDGEYFAVSFVESETGTRKIRVYDREGA-LNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFV 282 (1265)
T ss_pred ccCCcEEEEEEEeccCCceeEEEecccch-hhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccc
Confidence 99999999832 111259999998732 2222 2344568999999999998776656779999986532 222
Q ss_pred EEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceee---eeecccceeeEEEcCCCC
Q 013871 275 GTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFF---KKMFDKLFQAEWKPVSPD 338 (434)
Q Consensus 275 ~~~~~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~~~---~~~~~~~~~~~w~p~~~~ 338 (434)
..+... .+..++|+.++..|++-++.-. ...|++|....-..| ...+++..-+.|+|..+.
T Consensus 283 l~~p~de~~ve~L~Wns~sdiLAv~~~~~e---~~~v~lwt~~NyhWYLKq~l~~~~~~~~~W~p~~~~ 348 (1265)
T KOG1920|consen 283 LPFPLDEKEVEELAWNSNSDILAVVTSNLE---NSLVQLWTTGNYHWYLKQELQFSQKALLMWDPVTEK 348 (1265)
T ss_pred cCCcccccchheeeecCCCCceeeeecccc---cceEEEEEecCeEEEEEEEEeccccccccccCCCce
Confidence 222211 2566999999999998544110 334999997554332 234444444888886543
No 283
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.21 E-value=0.00012 Score=77.30 Aligned_cols=207 Identities=13% Similarity=0.155 Sum_probs=115.9
Q ss_pred cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCce--eeeee--cccceeEEEECCCCCeEEEEEEeccc
Q 013871 90 VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPL--ARRSF--FRCSTVQLNWNRGSTGLLAVAQSDVD 165 (434)
Q Consensus 90 ~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i--~~~~~--~~~~~~~~~ws~~G~~l~~~~~~~~d 165 (434)
...+..++.++....+++ +++.+|+|++|++......... +..++ ......++..-+.|+.+++.+ .|
T Consensus 1048 s~~v~k~a~s~~~~s~Fv-----sgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t---~D 1119 (1431)
T KOG1240|consen 1048 SSAVIKLAVSSEHTSLFV-----SGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVST---KD 1119 (1431)
T ss_pred cccccceeecCCCCceEE-----EecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEc---CC
Confidence 334556666666434444 3577899999998653211000 11111 112222233333344444331 11
Q ss_pred ccCceeecceeEEEEeeCCc-c-----eeeeecCCCCCeEEE-EECcCCCEEEEEEccCCCeEEEEecccce-----eEE
Q 013871 166 KTNQSYYGESKLNYLTTDGT-H-----EGLVPLRKEGPVHDV-QWSYSGSEFAVVYGFMPASATIFNKKCRP-----ILE 233 (434)
Q Consensus 166 ~~~~~~~g~~~l~~l~~~~~-~-----~~~v~l~~~~~i~~v-~wspdg~~~av~~g~~~~~v~l~d~~~~~-----~~~ 233 (434)
|...++.++.... + .....+.+.|.+-++ ++.-......++++..-+.+..||.+... -.+
T Consensus 1120 -------G~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~ 1192 (1431)
T KOG1240|consen 1120 -------GSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQ 1192 (1431)
T ss_pred -------CeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcC
Confidence 3222333333111 0 111123345555443 33332222344467777899999987432 223
Q ss_pred eCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC---CceEE---EECCCCCEEEEEEcCCceeeCC
Q 013871 234 LGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE---CSVTS---EWSPDGRYFMTATTAPRLQIDN 307 (434)
Q Consensus 234 ~~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~---~~~~~---~wspdg~~l~tas~~prl~~D~ 307 (434)
...|.+++++.+|.+.++++|. ..|.+.+||++=+..+.....+ .+..+ -..|.....++++.. ..|
T Consensus 1193 ~~hG~vTSi~idp~~~WlviGt---s~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~----~~n 1265 (1431)
T KOG1240|consen 1193 LRHGLVTSIVIDPWCNWLVIGT---SRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSS----SNN 1265 (1431)
T ss_pred ccccceeEEEecCCceEEEEec---CCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEeccc----CCC
Confidence 4678999999999999999998 6689999999988777776654 33333 334444566666552 278
Q ss_pred cEEEEeecCce
Q 013871 308 GIKIFHHNGSL 318 (434)
Q Consensus 308 ~i~iw~~~g~~ 318 (434)
.|-+|++.+..
T Consensus 1266 evs~wn~~~g~ 1276 (1431)
T KOG1240|consen 1266 EVSTWNMETGL 1276 (1431)
T ss_pred ceeeeecccCc
Confidence 99999997654
No 284
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.20 E-value=0.0039 Score=57.07 Aligned_cols=223 Identities=11% Similarity=0.049 Sum_probs=118.5
Q ss_pred eEEecC-CCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeec-CCCcEEEEecCCeEEEEeCCCCC
Q 013871 4 LLTCLR-VGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFS-SDEAVACRMATNEIQFFDTTDFP 81 (434)
Q Consensus 4 ~l~fSP-~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S-~d~~~la~~~~~~i~v~~~~~~~ 81 (434)
++.|.+ +|.++++ .. ..+.|..|+..+++.. .+... . ...+.+. ++++++++.. +.+.++|..+..
T Consensus 4 gp~~d~~~g~l~~~-D~----~~~~i~~~~~~~~~~~-~~~~~----~-~~G~~~~~~~g~l~v~~~-~~~~~~d~~~g~ 71 (246)
T PF08450_consen 4 GPVWDPRDGRLYWV-DI----PGGRIYRVDPDTGEVE-VIDLP----G-PNGMAFDRPDGRLYVADS-GGIAVVDPDTGK 71 (246)
T ss_dssp EEEEETTTTEEEEE-ET----TTTEEEEEETTTTEEE-EEESS----S-EEEEEEECTTSEEEEEET-TCEEEEETTTTE
T ss_pred ceEEECCCCEEEEE-Ec----CCCEEEEEECCCCeEE-EEecC----C-CceEEEEccCCEEEEEEc-CceEEEecCCCc
Confidence 567888 5555544 31 3578999998877542 23222 2 2266777 6777766654 555666876643
Q ss_pred Cceeeee-----ecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeE
Q 013871 82 KGILYRL-----RVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGL 156 (434)
Q Consensus 82 ~~~~~~~-----~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l 156 (434)
....... ......++.+.|++.-.+.--..........=.+|.+.. ...+....-.-.....+.|+|+|+.|
T Consensus 72 ~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~---~~~~~~~~~~~~~pNGi~~s~dg~~l 148 (246)
T PF08450_consen 72 VTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDP---DGKVTVVADGLGFPNGIAFSPDGKTL 148 (246)
T ss_dssp EEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEET---TSEEEEEEEEESSEEEEEEETTSSEE
T ss_pred EEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECC---CCeEEEEecCcccccceEECCcchhe
Confidence 2222233 223577889999854222211111111110034454443 21111111111234579999999987
Q ss_pred EEEEEecccccCceeecceeEEEEeeC--Cc----ceeeeecCCC-CCeEEEEECcCCCEEEEEEccCCCeEEEEecccc
Q 013871 157 LAVAQSDVDKTNQSYYGESKLNYLTTD--GT----HEGLVPLRKE-GPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR 229 (434)
Q Consensus 157 ~~~~~~~~d~~~~~~~g~~~l~~l~~~--~~----~~~~v~l~~~-~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~ 229 (434)
++.- + ....|+.++.. +. ......+... +..-.+++..+|+.++ +....+.|.+||.+++
T Consensus 149 yv~d-s----------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~v--a~~~~~~I~~~~p~G~ 215 (246)
T PF08450_consen 149 YVAD-S----------FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWV--ADWGGGRIVVFDPDGK 215 (246)
T ss_dssp EEEE-T----------TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEE--EEETTTEEEEEETTSC
T ss_pred eecc-c----------ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEE--EEcCCCEEEEECCCcc
Confidence 6631 1 11124555543 22 0111223322 2366799999997666 3445679999999987
Q ss_pred eeEEe--CCcCeeEEEE-CCCCCeEEEE
Q 013871 230 PILEL--GSGPYNTVRW-NPKGKFLCLA 254 (434)
Q Consensus 230 ~~~~~--~~~~~~~i~~-SP~g~~l~~~ 254 (434)
.+..+ .....++++| -|+.+.|.+.
T Consensus 216 ~~~~i~~p~~~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 216 LLREIELPVPRPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp EEEEEE-SSSSEEEEEEESTTSSEEEEE
T ss_pred EEEEEcCCCCCEEEEEEECCCCCEEEEE
Confidence 76655 4457788888 4676655543
No 285
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.20 E-value=0.00011 Score=72.64 Aligned_cols=163 Identities=18% Similarity=0.218 Sum_probs=92.9
Q ss_pred eeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEE
Q 013871 144 TVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATI 223 (434)
Q Consensus 144 ~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l 223 (434)
...+.+||.|+.++++.. |+-.||. ..+..... .|.-.+++|++ ...||+... ..+|.+
T Consensus 35 p~~ls~npngr~v~V~g~-----------geY~iyt--~~~~r~k~-----~G~g~~~vw~~-~n~yAv~~~--~~~I~I 93 (443)
T PF04053_consen 35 PQSLSHNPNGRFVLVCGD-----------GEYEIYT--ALAWRNKA-----FGSGLSFVWSS-RNRYAVLES--SSTIKI 93 (443)
T ss_dssp -SEEEE-TTSSEEEEEET-----------TEEEEEE--TTTTEEEE-----EEE-SEEEE-T-SSEEEEE-T--TS-EEE
T ss_pred CeeEEECCCCCEEEEEcC-----------CEEEEEE--ccCCcccc-----cCceeEEEEec-CccEEEEEC--CCeEEE
Confidence 458899999999988421 2222333 11211111 35667899999 556886533 568998
Q ss_pred E-ecccceeEEeC-CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceEEEECCCCCEEEEEEcCC
Q 013871 224 F-NKKCRPILELG-SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAP 301 (434)
Q Consensus 224 ~-d~~~~~~~~~~-~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~~~wspdg~~l~tas~~p 301 (434)
| +.+...+..+. ...+..|.. |.+|++.+. +.|.+||.++++.+..+....+..+.||++|.+++..+
T Consensus 94 ~kn~~~~~~k~i~~~~~~~~If~---G~LL~~~~~----~~i~~yDw~~~~~i~~i~v~~vk~V~Ws~~g~~val~t--- 163 (443)
T PF04053_consen 94 YKNFKNEVVKSIKLPFSVEKIFG---GNLLGVKSS----DFICFYDWETGKLIRRIDVSAVKYVIWSDDGELVALVT--- 163 (443)
T ss_dssp EETTEE-TT-----SS-EEEEE----SSSEEEEET----TEEEEE-TTT--EEEEESS-E-EEEEE-TTSSEEEEE----
T ss_pred EEcCccccceEEcCCcccceEEc---CcEEEEECC----CCEEEEEhhHcceeeEEecCCCcEEEEECCCCEEEEEe---
Confidence 6 55544433342 223555555 898888763 26999999999999999887778899999999999987
Q ss_pred ceeeCCcEEEEeecCc------------eeee-ee-cccceeeEEEcCCCCCCCC
Q 013871 302 RLQIDNGIKIFHHNGS------------LFFK-KM-FDKLFQAEWKPVSPDKFGD 342 (434)
Q Consensus 302 rl~~D~~i~iw~~~g~------------~~~~-~~-~~~~~~~~w~p~~~~~~~~ 342 (434)
++.+.|.+++-. .+.. .+ ...+....|.-+ -.+|+.
T Consensus 164 ----~~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d-~fiYtT 213 (443)
T PF04053_consen 164 ----KDSIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED-CFIYTT 213 (443)
T ss_dssp ----S-SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT-EEEEE-
T ss_pred ----CCeEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC-EEEEEc
Confidence 679999988665 2222 22 567888888876 445544
No 286
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.20 E-value=0.00045 Score=63.47 Aligned_cols=72 Identities=15% Similarity=0.248 Sum_probs=57.3
Q ss_pred CCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccce--eEE--eCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEcc
Q 013871 194 KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP--ILE--LGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV 269 (434)
Q Consensus 194 ~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~--~~~--~~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~ 269 (434)
+.+++..+.|.|....+. +|..+.++.+||+-+.. ..+ .|...+..+.+-+.-+.+.+++ .+|.|.+||.+
T Consensus 196 h~~~~~~l~Wd~~~~~Lf--Sg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~---edg~i~~w~mn 270 (404)
T KOG1409|consen 196 HTGEVTCLKWDPGQRLLF--SGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCG---EDGGIVVWNMN 270 (404)
T ss_pred cccceEEEEEcCCCcEEE--eccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeecc---CCCeEEEEecc
Confidence 478999999998776666 68889999999985433 222 3677888888888888888888 77899999987
Q ss_pred C
Q 013871 270 D 270 (434)
Q Consensus 270 ~ 270 (434)
.
T Consensus 271 ~ 271 (404)
T KOG1409|consen 271 V 271 (404)
T ss_pred c
Confidence 4
No 287
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.20 E-value=0.00028 Score=69.45 Aligned_cols=140 Identities=12% Similarity=0.212 Sum_probs=85.5
Q ss_pred ceEEEEEcCCCCCCCceeeeee--cccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeee---ec
Q 013871 118 ASVQIYACGKDLQSQPLARRSF--FRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLV---PL 192 (434)
Q Consensus 118 ~~v~i~~~~~~~~~~~i~~~~~--~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v---~l 192 (434)
+.+-++.+.. . .+..+.. ...+...+.||....+.+..........+... -+..+|-+. +.+-.++ .+
T Consensus 184 aNl~L~~~~~---~-klEvL~yirTE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~-~d~ciYE~~--r~klqrvsvtsi 256 (545)
T PF11768_consen 184 ANLHLLSCSG---G-KLEVLSYIRTENDPLDVEFSLNQPYQIHTVEQSISVKGEPS-ADSCIYECS--RNKLQRVSVTSI 256 (545)
T ss_pred ccEEEEEecC---C-cEEEEEEEEecCCcEEEEccCCCCcEEEEEEEecCCCCCce-eEEEEEEee--cCceeEEEEEEE
Confidence 4566676654 1 2222222 23445666777644444444333222222211 112233332 2222222 23
Q ss_pred CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeEEe-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEcc
Q 013871 193 RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV 269 (434)
Q Consensus 193 ~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~~-~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~ 269 (434)
.....|.+++++|+...|++ |..|+.+.+||......... ..-..+.++|+|+|.++++|+ .+|.|.+||+.
T Consensus 257 pL~s~v~~ca~sp~E~kLvl--GC~DgSiiLyD~~~~~t~~~ka~~~P~~iaWHp~gai~~V~s---~qGelQ~FD~A 329 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVL--GCEDGSIILYDTTRGVTLLAKAEFIPTLIAWHPDGAIFVVGS---EQGELQCFDMA 329 (545)
T ss_pred ecCCcceEEecCcccceEEE--EecCCeEEEEEcCCCeeeeeeecccceEEEEcCCCcEEEEEc---CCceEEEEEee
Confidence 34778999999999999995 88999999999876543322 334557899999999999998 67899999976
No 288
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.19 E-value=0.0005 Score=69.31 Aligned_cols=121 Identities=15% Similarity=0.245 Sum_probs=80.3
Q ss_pred CCCeEEEEECcCCCEEEEEEccCCCeEEEEecccce-------------eEE--eCCcCeeEEEECCCCCeEEEEecCCC
Q 013871 195 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP-------------ILE--LGSGPYNTVRWNPKGKFLCLAGFGNL 259 (434)
Q Consensus 195 ~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~-------------~~~--~~~~~~~~i~~SP~g~~l~~~~~~~~ 259 (434)
....+.+.+||||+++++ ++.....+.++|++... +.+ ++.+|. ..+|.++|....+.- .
T Consensus 320 GKsPHGV~vSPDGkylyV-anklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPL-HTaFDg~G~aytslf---~ 394 (635)
T PRK02888 320 PKNPHGVNTSPDGKYFIA-NGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPL-HTAFDGRGNAYTTLF---L 394 (635)
T ss_pred CCCccceEECCCCCEEEE-eCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcc-eEEECCCCCEEEeEe---e
Confidence 346689999999999987 57777899999986422 111 244553 467899998555554 4
Q ss_pred CCeEEEEEccC----------CEEEEEeeCC-CceEEE------ECCCCCEEEEEEcCCceee-------CCcEEEEeec
Q 013871 260 PGDMAFWDYVD----------GKQLGTTRAE-CSVTSE------WSPDGRYFMTATTAPRLQI-------DNGIKIFHHN 315 (434)
Q Consensus 260 ~g~i~iwd~~~----------~~~i~~~~~~-~~~~~~------wspdg~~l~tas~~prl~~-------D~~i~iw~~~ 315 (434)
+..|..||+.+ ...+..+.-| .+-++. -.|||++|++.....+-|. -..-+|.|++
T Consensus 395 dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~nk~skdrfl~vgpl~pen~qlidIs 474 (635)
T PRK02888 395 DSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLNKFSKDRFLPVGPLHPENDQLIDIS 474 (635)
T ss_pred cceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEccccccccccCCCCCCCCcceeEEcc
Confidence 56999999876 2344444433 222333 3899999999876554221 2346788888
Q ss_pred Cceee
Q 013871 316 GSLFF 320 (434)
Q Consensus 316 g~~~~ 320 (434)
|..+.
T Consensus 475 gdkM~ 479 (635)
T PRK02888 475 GDKMK 479 (635)
T ss_pred CCeeE
Confidence 87543
No 289
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.17 E-value=4.4e-05 Score=69.89 Aligned_cols=247 Identities=11% Similarity=0.174 Sum_probs=137.7
Q ss_pred CCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCc-ee----eeee------------cCCeeEEEEeCCCCCeEEEEec
Q 013871 50 TTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKG-IL----YRLR------------VPGVAAFEVSKAPGSHVAVFVP 111 (434)
Q Consensus 50 ~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~-~~----~~~~------------~~~v~~~~~sp~~~~~ia~~~~ 111 (434)
+.+.++.|..+|.+||+|. +|.|.+|.-...... .. .+.| .+.|..+.|.++++.. .|..
T Consensus 26 diis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a--~FLl 103 (433)
T KOG1354|consen 26 DIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLA--EFLL 103 (433)
T ss_pred cceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCcc--EEEE
Confidence 5566899999999999995 579988875442221 00 0011 1256777887764422 1211
Q ss_pred CCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeee-
Q 013871 112 ESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLV- 190 (434)
Q Consensus 112 ~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v- 190 (434)
.+.+.+|++|.+.... .. + +...+.+..+-..+ + .|. +.+.+..+..+
T Consensus 104 --stNdktiKlWKi~er~---~k--~-----~~~~~~~~~~~~~~---~---------------~lr-~p~~~~~~~~ve 152 (433)
T KOG1354|consen 104 --STNDKTIKLWKIRERG---SK--K-----EGYNLPEEGPPGTI---T---------------SLR-LPVEGRHDLEVE 152 (433)
T ss_pred --ecCCcceeeeeeeccc---cc--c-----ccccccccCCCCcc---c---------------eee-ceeeccccceee
Confidence 1344578899886521 10 1 11122221110000 0 000 00001111111
Q ss_pred -------ecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-cce---eEEeC-------CcCeeEEEECCCCC-eE
Q 013871 191 -------PLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRP---ILELG-------SGPYNTVRWNPKGK-FL 251 (434)
Q Consensus 191 -------~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~-~~~---~~~~~-------~~~~~~i~~SP~g~-~l 251 (434)
.-.+...|+++.++.|+..|. ...|=+|.+|++. ..+ +.++- +.-+++..|+|.-. .+
T Consensus 153 a~prRv~aNaHtyhiNSIS~NsD~Et~l---SADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f 229 (433)
T KOG1354|consen 153 ASPRRVYANAHTYHINSISVNSDKETFL---SADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVF 229 (433)
T ss_pred eeeeeeccccceeEeeeeeecCccceEe---eccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEE
Confidence 112356788999999888887 3345689999885 222 23321 23467888999765 44
Q ss_pred EEEecCCCCCeEEEEEccCCE-------EEEEeeC-----------CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEe
Q 013871 252 CLAGFGNLPGDMAFWDYVDGK-------QLGTTRA-----------ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFH 313 (434)
Q Consensus 252 ~~~~~~~~~g~i~iwd~~~~~-------~i~~~~~-----------~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~ 313 (434)
+..+ ..|+|++.|++... +...... ..++++.||++|+|+++-.. .+|+|||
T Consensus 230 ~YSS---SKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-------ltvk~wD 299 (433)
T KOG1354|consen 230 VYSS---SKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-------LTVKLWD 299 (433)
T ss_pred EEec---CCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-------ceeEEEe
Confidence 4444 55899999988421 1111111 14556999999999998653 7999999
Q ss_pred ec--Cceeeeeec--------------c---cceeeEEEcCCCCCCCC
Q 013871 314 HN--GSLFFKKMF--------------D---KLFQAEWKPVSPDKFGD 342 (434)
Q Consensus 314 ~~--g~~~~~~~~--------------~---~~~~~~w~p~~~~~~~~ 342 (434)
++ .+.+...+. + .-+++.|+-.+..+++.
T Consensus 300 ~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TG 347 (433)
T KOG1354|consen 300 LNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTG 347 (433)
T ss_pred ccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecc
Confidence 83 333322211 1 23678898887777765
No 290
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.13 E-value=0.0013 Score=60.91 Aligned_cols=213 Identities=12% Similarity=0.064 Sum_probs=117.8
Q ss_pred EEecCCCcEEEEEecCCCCCCCcEEEEEcC-CCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCCCc
Q 013871 5 LTCLRVGLIIQTFQKSSTPQEKNVILWKTE-TGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPKG 83 (434)
Q Consensus 5 l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~-~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~~ 83 (434)
-.|||||++|.|.+.......+.|-|||+. +-+.+..|..... . -..+.|.|||+.|+.+..+- .- -++..
T Consensus 56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GI--G-PHel~l~pDG~tLvVANGGI-~T--hpd~G-- 127 (305)
T PF07433_consen 56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGI--G-PHELLLMPDGETLVVANGGI-ET--HPDSG-- 127 (305)
T ss_pred EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCc--C-hhhEEEcCCCCEEEEEcCCC-cc--CcccC--
Confidence 469999999999996655556899999998 5567778876543 2 23688999998888775431 10 00100
Q ss_pred eeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEec
Q 013871 84 ILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSD 163 (434)
Q Consensus 84 ~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~ 163 (434)
..++.++ .+ .+.+++....++. .+.-|.++. ..++.++..+.|+++|..++.+ +-.
T Consensus 128 -R~kLNl~-----tM----~psL~~ld~~sG~---ll~q~~Lp~----------~~~~lSiRHLa~~~~G~V~~a~-Q~q 183 (305)
T PF07433_consen 128 -RAKLNLD-----TM----QPSLVYLDARSGA---LLEQVELPP----------DLHQLSIRHLAVDGDGTVAFAM-QYQ 183 (305)
T ss_pred -ceecChh-----hc----CCceEEEecCCCc---eeeeeecCc----------cccccceeeEEecCCCcEEEEE-ecC
Confidence 1122221 11 1223322222211 223333322 1244456678899998754332 221
Q ss_pred ccccCceeecceeEEEEeeCCcceeeeecC------CCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeEE-eCC
Q 013871 164 VDKTNQSYYGESKLNYLTTDGTHEGLVPLR------KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILE-LGS 236 (434)
Q Consensus 164 ~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~------~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~-~~~ 236 (434)
.+... ...-|.... .+..-..+... -.+.|-+|+++++|..+++ +.-.-+.+.+||.....+.. ..-
T Consensus 184 g~~~~----~~PLva~~~-~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~-tsPrGg~~~~~d~~tg~~~~~~~l 257 (305)
T PF07433_consen 184 GDPGD----APPLVALHR-RGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAV-TSPRGGRVAVWDAATGRLLGSVPL 257 (305)
T ss_pred CCCCc----cCCeEEEEc-CCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEE-ECCCCCEEEEEECCCCCEeecccc
Confidence 11111 001112221 11111111111 1578999999999999987 56667799999987655443 344
Q ss_pred cCeeEEEECCCCCeEEEEec
Q 013871 237 GPYNTVRWNPKGKFLCLAGF 256 (434)
Q Consensus 237 ~~~~~i~~SP~g~~l~~~~~ 256 (434)
..+..++-.+++ ++++.|.
T Consensus 258 ~D~cGva~~~~~-f~~ssG~ 276 (305)
T PF07433_consen 258 PDACGVAPTDDG-FLVSSGQ 276 (305)
T ss_pred CceeeeeecCCc-eEEeCCC
Confidence 455566766766 6666553
No 291
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.11 E-value=0.00033 Score=68.55 Aligned_cols=188 Identities=10% Similarity=0.075 Sum_probs=111.8
Q ss_pred ecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeee--------------------cCCCcEEEE
Q 013871 7 CLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRF--------------------SSDEAVACR 66 (434)
Q Consensus 7 fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~--------------------S~d~~~la~ 66 (434)
|+|-+.|+|... .|+.++|||+.+++.-..|...........+..| +-|-..++.
T Consensus 1 ~~~~~~~~A~~~-----~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvl 75 (541)
T KOG4547|consen 1 SPPALDYFALST-----GDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVL 75 (541)
T ss_pred CCchhheEeecC-----CCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEe
Confidence 356677888766 7899999999988765555432211111113333 224456666
Q ss_pred ec-CCeEEEEeCCCCCCceeee--eecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccc
Q 013871 67 MA-TNEIQFFDTTDFPKGILYR--LRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCS 143 (434)
Q Consensus 67 ~~-~~~i~v~~~~~~~~~~~~~--~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~ 143 (434)
+. .+.|.+|++...+...... .|..+|..+.++.+-+ ++| +.+.+..+..|+... ...++.....+..
T Consensus 76 gt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~---ciy---S~~ad~~v~~~~~~~---~~~~~~~~~~~~~ 146 (541)
T KOG4547|consen 76 GTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLG---CIY---SVGADLKVVYILEKE---KVIIRIWKEQKPL 146 (541)
T ss_pred ecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccC---ceE---ecCCceeEEEEeccc---ceeeeeeccCCCc
Confidence 64 4799999987755322111 2345677777765521 122 346677888888766 5556655555666
Q ss_pred eeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeec-CCCCCeEEEEECcC-----CCEEEEEEccC
Q 013871 144 TVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL-RKEGPVHDVQWSYS-----GSEFAVVYGFM 217 (434)
Q Consensus 144 ~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l-~~~~~i~~v~wspd-----g~~~av~~g~~ 217 (434)
..++..+|||..+++. +. .|..+++... +....+ .+.++|..++|--+ |.+|... ..+
T Consensus 147 ~~sl~is~D~~~l~~a-s~-------------~ik~~~~~~k-evv~~ftgh~s~v~t~~f~~~~~g~~G~~vLss-a~~ 210 (541)
T KOG4547|consen 147 VSSLCISPDGKILLTA-SR-------------QIKVLDIETK-EVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSS-AAA 210 (541)
T ss_pred cceEEEcCCCCEEEec-cc-------------eEEEEEccCc-eEEEEecCCCcceEEEEEEEeccccccceeeec-ccc
Confidence 6788899998876542 11 2444444443 333333 35889999999876 6676642 223
Q ss_pred CCeEEEE
Q 013871 218 PASATIF 224 (434)
Q Consensus 218 ~~~v~l~ 224 (434)
..-+.+|
T Consensus 211 ~r~i~~w 217 (541)
T KOG4547|consen 211 ERGITVW 217 (541)
T ss_pred ccceeEE
Confidence 3355555
No 292
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.09 E-value=0.0054 Score=62.08 Aligned_cols=102 Identities=13% Similarity=0.157 Sum_probs=71.9
Q ss_pred ECcCCCEEEEEEccCCCeEEEEeccc-----ce-eEEeC-CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEE--
Q 013871 203 WSYSGSEFAVVYGFMPASATIFNKKC-----RP-ILELG-SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQ-- 273 (434)
Q Consensus 203 wspdg~~~av~~g~~~~~v~l~d~~~-----~~-~~~~~-~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~-- 273 (434)
+.++|++..+ + .++|.++|.+. .. +..+. ...-..+.+||||+++++++. +..++.|.|+.+.+.
T Consensus 284 ~vkdGK~~~V--~--gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVank--lS~tVSVIDv~k~k~~~ 357 (635)
T PRK02888 284 AVKAGKFKTI--G--GSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGK--LSPTVTVIDVRKLDDLF 357 (635)
T ss_pred hhhCCCEEEE--C--CCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCC--CCCcEEEEEChhhhhhh
Confidence 3467876554 2 45899999876 23 33332 334467999999999988764 457999999987542
Q ss_pred ----------EEEee-CCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecC
Q 013871 274 ----------LGTTR-AECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG 316 (434)
Q Consensus 274 ----------i~~~~-~~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g 316 (434)
+...+ +....+.+|+++|..+.|--. |+.|..|++..
T Consensus 358 ~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~------dsqv~kwn~~~ 405 (635)
T PRK02888 358 DGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFL------DSQIVKWNIEA 405 (635)
T ss_pred hccCCccceEEEeeccCCCcceEEECCCCCEEEeEee------cceeEEEehHH
Confidence 33332 336778899999986666555 99999999854
No 293
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.08 E-value=0.00019 Score=64.56 Aligned_cols=132 Identities=13% Similarity=0.144 Sum_probs=92.5
Q ss_pred CCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeEE-----eCCcCeeEEEECC-CCCeEEEEecCCCCCeEEEEEc
Q 013871 195 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILE-----LGSGPYNTVRWNP-KGKFLCLAGFGNLPGDMAFWDY 268 (434)
Q Consensus 195 ~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~-----~~~~~~~~i~~SP-~g~~l~~~~~~~~~g~i~iwd~ 268 (434)
+.++....|+-....+++ +|+.|+.+..||++.-..+. .|...|.+|.=|| .+.+|++|++|. .|++||+
T Consensus 165 e~E~Wta~f~~~~pnlvy-tGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe---~i~~~Dt 240 (339)
T KOG0280|consen 165 EFEAWTAKFSDKEPNLVY-TGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDE---CIRVLDT 240 (339)
T ss_pred ceeeeeeecccCCCceEE-ecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEecccc---ceeeeeh
Confidence 567777888876666665 79999999999998322222 2677788888877 467999999776 9999999
Q ss_pred cCC-EEEEEee-CCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCcee--------eeeecccceeeEEEcC
Q 013871 269 VDG-KQLGTTR-AECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLF--------FKKMFDKLFQAEWKPV 335 (434)
Q Consensus 269 ~~~-~~i~~~~-~~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~~--------~~~~~~~~~~~~w~p~ 335 (434)
++. +.+.... +.++..+.|+|--.+.+.+.+ |-++++|-+++.... ++.+..-.|...|+-.
T Consensus 241 Rnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~C-----Mh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~ 312 (339)
T KOG0280|consen 241 RNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAAC-----MHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSK 312 (339)
T ss_pred hcccCccccCccccceEEEEecchhhhHHHHHH-----HhcCceEEEecccccchheeeeccccccceeeccccccc
Confidence 854 5554443 348888999997665444444 278999998865422 2233445788888443
No 294
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.06 E-value=1.4e-05 Score=50.18 Aligned_cols=36 Identities=28% Similarity=0.631 Sum_probs=32.0
Q ss_pred EEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEe
Q 013871 272 KQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFH 313 (434)
Q Consensus 272 ~~i~~~~~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~ 313 (434)
+++..+.+| .+..++|+|++.+|++++. |+.|+|||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~------D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSS------DGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEET------TSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCC------CCEEEEEC
Confidence 567788877 6667999999999999999 99999997
No 295
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.04 E-value=2.3e-05 Score=71.65 Aligned_cols=136 Identities=12% Similarity=0.169 Sum_probs=98.0
Q ss_pred eEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccc------e-eEEeCCcCeeEEEECC-C
Q 013871 176 KLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR------P-ILELGSGPYNTVRWNP-K 247 (434)
Q Consensus 176 ~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~------~-~~~~~~~~~~~i~~SP-~ 247 (434)
.+-++++.+++...+. ..+.|.+.+|.-.++.+. .|...+.|..+|+++. + ..-+|...++++..=. +
T Consensus 235 qv~L~nvetg~~qsf~--sksDVfAlQf~~s~nLv~--~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s 310 (425)
T KOG2695|consen 235 QVLLTNVETGHQQSFQ--SKSDVFALQFAGSDNLVF--NGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFS 310 (425)
T ss_pred eeEEEEeecccccccc--cchhHHHHHhcccCCeeE--ecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccc
Confidence 3444555555443333 367888889987666555 5999999999999755 2 2334888888877655 5
Q ss_pred CCeEEEEecCCCCCeEEEEEccCCEE---EEEeeCCCc----eEEEECCCCCEEEEEEcCCceeeCCcEEEEeec-Ccee
Q 013871 248 GKFLCLAGFGNLPGDMAFWDYVDGKQ---LGTTRAECS----VTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLF 319 (434)
Q Consensus 248 g~~l~~~~~~~~~g~i~iwd~~~~~~---i~~~~~~~~----~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~-g~~~ 319 (434)
+++|+..+ ++|+|.+||.+--++ +..+++|-- .-+...+....+++++. |--.|||.+. |.++
T Consensus 311 ~q~LmaS~---M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~Gd------DcytRiWsl~~ghLl 381 (425)
T KOG2695|consen 311 QQKLMASD---MTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGD------DCYTRIWSLDSGHLL 381 (425)
T ss_pred cceEeecc---CcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccC------eeEEEEEecccCcee
Confidence 77888777 889999999875555 888888722 22666788888999888 9999999995 6676
Q ss_pred eeeec
Q 013871 320 FKKMF 324 (434)
Q Consensus 320 ~~~~~ 324 (434)
-..++
T Consensus 382 ~tipf 386 (425)
T KOG2695|consen 382 CTIPF 386 (425)
T ss_pred eccCC
Confidence 65544
No 296
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.03 E-value=0.0015 Score=64.74 Aligned_cols=128 Identities=13% Similarity=0.121 Sum_probs=72.3
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCC
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFP 81 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~ 81 (434)
.+.|+++|+|++++.++ |+.-.|+.....+. ..+.. .. .+.|+++++|++.-.+++|.|+......
T Consensus 35 p~~ls~npngr~v~V~g------~geY~iyt~~~~r~-k~~G~------g~-~~vw~~~n~yAv~~~~~~I~I~kn~~~~ 100 (443)
T PF04053_consen 35 PQSLSHNPNGRFVLVCG------DGEYEIYTALAWRN-KAFGS------GL-SFVWSSRNRYAVLESSSTIKIYKNFKNE 100 (443)
T ss_dssp -SEEEE-TTSSEEEEEE------TTEEEEEETTTTEE-EEEEE-------S-EEEE-TSSEEEEE-TTS-EEEEETTEE-
T ss_pred CeeEEECCCCCEEEEEc------CCEEEEEEccCCcc-cccCc------ee-EEEEecCccEEEEECCCeEEEEEcCccc
Confidence 46899999999999966 78888887544433 22221 12 6789998887777778899998543322
Q ss_pred CceeeeeecCC-eeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEE
Q 013871 82 KGILYRLRVPG-VAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVA 160 (434)
Q Consensus 82 ~~~~~~~~~~~-v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~ 160 (434)
....+..+. +..+ .+ +..+++- ..+.|.+||..+ ++.+++..... +..+.||++|+.+++++
T Consensus 101 --~~k~i~~~~~~~~I--f~--G~LL~~~------~~~~i~~yDw~~---~~~i~~i~v~~--vk~V~Ws~~g~~val~t 163 (443)
T PF04053_consen 101 --VVKSIKLPFSVEKI--FG--GNLLGVK------SSDFICFYDWET---GKLIRRIDVSA--VKYVIWSDDGELVALVT 163 (443)
T ss_dssp --TT-----SS-EEEE--E---SSSEEEE------ETTEEEEE-TTT-----EEEEESS-E---EEEEE-TTSSEEEEE-
T ss_pred --cceEEcCCcccceE--Ec--CcEEEEE------CCCCEEEEEhhH---cceeeEEecCC--CcEEEEECCCCEEEEEe
Confidence 112333331 3322 11 3444432 123699999988 77777776542 57899999999988763
No 297
>PRK13616 lipoprotein LpqB; Provisional
Probab=98.00 E-value=0.001 Score=68.30 Aligned_cols=164 Identities=12% Similarity=0.170 Sum_probs=88.2
Q ss_pred CCeeEEEEeCCCCCeEEEEe-cCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCc
Q 013871 91 PGVAAFEVSKAPGSHVAVFV-PESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQ 169 (434)
Q Consensus 91 ~~v~~~~~sp~~~~~ia~~~-~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~ 169 (434)
..+.+.++||++ ..+++.. ......+..-.||-.+. +......+.- .......|+|+|..|.+..... ....
T Consensus 350 ~~vsspaiSpdG-~~vA~v~~~~~~~~d~~s~Lwv~~~---gg~~~~lt~g-~~~t~PsWspDG~~lw~v~dg~--~~~~ 422 (591)
T PRK13616 350 GNITSAALSRSG-RQVAAVVTLGRGAPDPASSLWVGPL---GGVAVQVLEG-HSLTRPSWSLDADAVWVVVDGN--TVVR 422 (591)
T ss_pred cCcccceECCCC-CEEEEEEeecCCCCCcceEEEEEeC---CCcceeeecC-CCCCCceECCCCCceEEEecCc--ceEE
Confidence 467788999984 4444432 21122223334444432 1222233222 2366889999999887764211 0000
Q ss_pred e--eecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEE---Eecccce--e---EEe--C-C
Q 013871 170 S--YYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATI---FNKKCRP--I---LEL--G-S 236 (434)
Q Consensus 170 ~--~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l---~d~~~~~--~---~~~--~-~ 236 (434)
. ..+...+|.+.+.+..... ...+.|.++.|||||.+++++.+ ++|.+ -...... + ..+ . .
T Consensus 423 v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~~---g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~ 496 (591)
T PRK13616 423 VIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMIIG---GKVYLAVVEQTEDGQYALTNPREVGPGLG 496 (591)
T ss_pred EeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEEC---CEEEEEEEEeCCCCceeecccEEeecccC
Confidence 0 0123356766666543222 22568999999999999999864 46666 3322221 1 112 1 2
Q ss_pred cCeeEEEECCCCCeEEEEecCCCCCeEEEEEcc
Q 013871 237 GPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV 269 (434)
Q Consensus 237 ~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~ 269 (434)
.....+.|.+++.++ ++..+ .+..++..++.
T Consensus 497 ~~~~~l~W~~~~~L~-V~~~~-~~~~v~~v~vD 527 (591)
T PRK13616 497 DTAVSLDWRTGDSLV-VGRSD-PEHPVWYVNLD 527 (591)
T ss_pred CccccceEecCCEEE-EEecC-CCCceEEEecC
Confidence 235789999999965 44432 22334444444
No 298
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.98 E-value=0.0026 Score=70.07 Aligned_cols=130 Identities=10% Similarity=0.011 Sum_probs=86.7
Q ss_pred EEEEECcCCCEEEEEEccCCCeEEEEecccceeEEeC-C----------------cCeeEEEECCCCCeEEEEecCCCCC
Q 013871 199 HDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELG-S----------------GPYNTVRWNPKGKFLCLAGFGNLPG 261 (434)
Q Consensus 199 ~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~~~-~----------------~~~~~i~~SP~g~~l~~~~~~~~~g 261 (434)
++++++|++..+.+ +....+.|++||.....+..+. . ..-+.|+|+|+|+.|+++..++ +
T Consensus 686 ~gVa~dp~~g~LyV-ad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n--~ 762 (1057)
T PLN02919 686 WDVCFEPVNEKVYI-AMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSES--S 762 (1057)
T ss_pred eEEEEecCCCeEEE-EECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCC--C
Confidence 58999996555554 4566779999998655443321 0 1224599999999888877654 7
Q ss_pred eEEEEEccCCEEEEEee-----------------------CCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCce
Q 013871 262 DMAFWDYVDGKQLGTTR-----------------------AECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL 318 (434)
Q Consensus 262 ~i~iwd~~~~~~i~~~~-----------------------~~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~ 318 (434)
.|++||++++....... ...+..++++++|..+++-+. ++.|++||..+..
T Consensus 763 ~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~------N~rIrviD~~tg~ 836 (1057)
T PLN02919 763 SIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSY------NHKIKKLDPATKR 836 (1057)
T ss_pred eEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECC------CCEEEEEECCCCe
Confidence 99999998764321110 012346899999997766666 8999999996654
Q ss_pred eeee----------------ecccceeeEEEcCCC
Q 013871 319 FFKK----------------MFDKLFQAEWKPVSP 337 (434)
Q Consensus 319 ~~~~----------------~~~~~~~~~w~p~~~ 337 (434)
+... .+.+...+++.|++.
T Consensus 837 v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~ 871 (1057)
T PLN02919 837 VTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGR 871 (1057)
T ss_pred EEEEeccCCcCCCCCcccccccCCceEEEEeCCCC
Confidence 4321 122456677888775
No 299
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=0.0009 Score=62.76 Aligned_cols=72 Identities=14% Similarity=0.142 Sum_probs=57.8
Q ss_pred CcceEEecCCCc-EEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec--CCeEEEEeC
Q 013871 1 MLLLLTCLRVGL-IIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA--TNEIQFFDT 77 (434)
Q Consensus 1 ~V~~l~fSP~g~-~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~--~~~i~v~~~ 77 (434)
.|+.|+|||... .|..++ -+..|+|.|+++...+.+|...+ ..| +++|.-|+...++++ +|.|.|||+
T Consensus 195 ~IrdlafSp~~~GLl~~as-----l~nkiki~dlet~~~vssy~a~~---~~w-SC~wDlde~h~IYaGl~nG~VlvyD~ 265 (463)
T KOG1645|consen 195 FIRDLAFSPFNEGLLGLAS-----LGNKIKIMDLETSCVVSSYIAYN---QIW-SCCWDLDERHVIYAGLQNGMVLVYDM 265 (463)
T ss_pred hhhhhccCccccceeeeec-----cCceEEEEecccceeeeheeccC---Cce-eeeeccCCcceeEEeccCceEEEEEc
Confidence 478899999988 455555 67899999999999998888764 678 889999887666554 479999999
Q ss_pred CCCC
Q 013871 78 TDFP 81 (434)
Q Consensus 78 ~~~~ 81 (434)
...+
T Consensus 266 R~~~ 269 (463)
T KOG1645|consen 266 RQPE 269 (463)
T ss_pred cCCC
Confidence 7754
No 300
>PRK10115 protease 2; Provisional
Probab=97.97 E-value=0.013 Score=61.79 Aligned_cols=250 Identities=12% Similarity=0.074 Sum_probs=124.3
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC-------CeEEE
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT-------NEIQF 74 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~-------~~i~v 74 (434)
+..+.+||||++|+......+.+.-.|+|-|+.+|+.+...... .. ..+.|++|++.|+.... ..|..
T Consensus 129 l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~----~~-~~~~w~~D~~~~~y~~~~~~~~~~~~v~~ 203 (686)
T PRK10115 129 LGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDN----VE-PSFVWANDSWTFYYVRKHPVTLLPYQVWR 203 (686)
T ss_pred EeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccC----cc-eEEEEeeCCCEEEEEEecCCCCCCCEEEE
Confidence 45678999999999877555555678999999988643222111 12 25899999987766521 36777
Q ss_pred EeCCCCC--CceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCC
Q 013871 75 FDTTDFP--KGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRG 152 (434)
Q Consensus 75 ~~~~~~~--~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~ 152 (434)
+++.+.. .............-..+.+..+..+.+.. ..+..+.+.+++.+... .........-......+ ...
T Consensus 204 h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~--~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~--~~~ 278 (686)
T PRK10115 204 HTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHL--ASATTSEVLLLDAELAD-AEPFVFLPRRKDHEYSL--DHY 278 (686)
T ss_pred EECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEE--ECCccccEEEEECcCCC-CCceEEEECCCCCEEEE--EeC
Confidence 8877652 11122211111221223332234433322 23344677787753311 22111111111111111 122
Q ss_pred CCeEEEEEEecccccCceeecceeEEEEeeCC--cceeeeecCCCCCeEEEEECcCCCEEEEEEccCCC--eEEEEeccc
Q 013871 153 STGLLAVAQSDVDKTNQSYYGESKLNYLTTDG--THEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPA--SATIFNKKC 228 (434)
Q Consensus 153 G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~--~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~--~v~l~d~~~ 228 (434)
+..+.+.+..+. . ...|..+.+.. .....++-.....|.++.++ ++.+++. ...++ .+.++|..+
T Consensus 279 ~~~ly~~tn~~~--~------~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~--~~~l~~~-~~~~g~~~l~~~~~~~ 347 (686)
T PRK10115 279 QHRFYLRSNRHG--K------NFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF--TDWLVVE-ERQRGLTSLRQINRKT 347 (686)
T ss_pred CCEEEEEEcCCC--C------CceEEEecCCCcccCeEEECCCCCCEEEEEEEE--CCEEEEE-EEeCCEEEEEEEcCCC
Confidence 355554432211 1 11244444331 11222222123467788887 4566654 44455 556667655
Q ss_pred ceeEEeC-Cc--CeeEEEEC--CCCC-eEEEEecCCCCCeEEEEEccCCE
Q 013871 229 RPILELG-SG--PYNTVRWN--PKGK-FLCLAGFGNLPGDMAFWDYVDGK 272 (434)
Q Consensus 229 ~~~~~~~-~~--~~~~i~~S--P~g~-~l~~~~~~~~~g~i~iwd~~~~~ 272 (434)
..+..+. .. .+..+.++ +++. +++..+.-...+.++.+|..+++
T Consensus 348 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 348 REVIGIAFDDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred CceEEecCCCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 4455443 22 22333455 4444 44444433467899999998764
No 301
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=97.96 E-value=0.0036 Score=55.86 Aligned_cols=235 Identities=10% Similarity=0.068 Sum_probs=120.4
Q ss_pred CCcEEEEEcCCCc-EEEEEeecCcCCCCCCeeeecC-----CCcEEEEe-cCCeEEEEeCCCCCCceeeeeecCCeeEEE
Q 013871 25 EKNVILWKTETGE-AVYQLFQKNMTKTTWPSIRFSS-----DEAVACRM-ATNEIQFFDTTDFPKGILYRLRVPGVAAFE 97 (434)
Q Consensus 25 d~~v~iWd~~~g~-~~~~~~~~~~~~~~~~~~~~S~-----d~~~la~~-~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~ 97 (434)
..+|-+|++.+.. .+..+.+ .+.|.| ..-+||.+ ..++..+|...+.+. . .++....+.++.
T Consensus 51 t~sv~i~~~y~N~~~iv~~y~---------g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~-h-~~~cd~snn~v~ 119 (344)
T KOG4532|consen 51 TISVPINSHYSNPKGIVEFYT---------GMTFTPGSFINKCVTLADGGASGQFDLFACNTNDG-H-LYQCDVSNNDVT 119 (344)
T ss_pred eeeeEeccccCCchhhEEeee---------cccccchHhhccccEEEeccccceeeeecccCccc-c-eeeecccccchh
Confidence 3567788875442 2333322 234544 23355544 568999999875332 1 122211122222
Q ss_pred EeCCC-CCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeeccee
Q 013871 98 VSKAP-GSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESK 176 (434)
Q Consensus 98 ~sp~~-~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~ 176 (434)
+.... +...-+++ ...+.+++++.+.....+.. ..+.......+..++|++++.++. | +.+
T Consensus 120 ~~~r~cd~~~~~~i---~sndht~k~~~~~~~s~~~~---~h~~~~~~ns~~~snd~~~~~~Vg----d-s~~------- 181 (344)
T KOG4532|consen 120 LVKRYCDLKFPLNI---ASNDHTGKTMVVSGDSNKFA---VHNQNLTQNSLHYSNDPSWGSSVG----D-SRR------- 181 (344)
T ss_pred hhhhhcccccceee---ccCCcceeEEEEecCcccce---eeccccceeeeEEcCCCceEEEec----C-CCc-------
Confidence 21110 00000011 12334556666654221222 222223356788899999876652 1 111
Q ss_pred EEEEeeCCcceeeee--c-CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccce--eE------EeCCcCeeEEEEC
Q 013871 177 LNYLTTDGTHEGLVP--L-RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP--IL------ELGSGPYNTVRWN 245 (434)
Q Consensus 177 l~~l~~~~~~~~~v~--l-~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~--~~------~~~~~~~~~i~~S 245 (434)
++++.++...+..+. + +.+..-....|+.....||+ +..|+.+.|||++... .. .-|.+.+..+.||
T Consensus 182 Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv--~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fs 259 (344)
T KOG4532|consen 182 VFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAV--VFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFS 259 (344)
T ss_pred ceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEE--EecCCcEEEEEecccccchhhhcccCCCCCCceEEEEec
Confidence 233333332222221 1 12334457889999999996 6789999999997432 11 1278899999999
Q ss_pred CCCC--eEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceEEEECCCCCEEE
Q 013871 246 PKGK--FLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFM 295 (434)
Q Consensus 246 P~g~--~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~~~wspdg~~l~ 295 (434)
|.|- +|...- .-+.+.+.|+++++....+.-+. ...++|..+.+.
T Consensus 260 l~g~lDLLf~sE---hfs~~hv~D~R~~~~~q~I~i~~--d~~~~~~tq~if 306 (344)
T KOG4532|consen 260 LYGLLDLLFISE---HFSRVHVVDTRNYVNHQVIVIPD--DVERKHNTQHIF 306 (344)
T ss_pred CCCcceEEEEec---CcceEEEEEcccCceeeEEecCc--cccccccccccc
Confidence 9775 343332 23579999999885443332211 124555555443
No 302
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=97.95 E-value=0.0026 Score=57.37 Aligned_cols=40 Identities=13% Similarity=0.300 Sum_probs=32.8
Q ss_pred CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEe
Q 013871 235 GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTT 277 (434)
Q Consensus 235 ~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~ 277 (434)
....+-.+..||||.+|++.. ..|.|.+|++-+.++....
T Consensus 228 ~~d~i~kmSlSPdg~~La~ih---~sG~lsLW~iPsL~~~~~W 267 (282)
T PF15492_consen 228 EQDGIFKMSLSPDGSLLACIH---FSGSLSLWEIPSLRLQRSW 267 (282)
T ss_pred CCCceEEEEECCCCCEEEEEE---cCCeEEEEecCcchhhccc
Confidence 356678899999999999998 6689999999877665544
No 303
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=97.94 E-value=0.00017 Score=74.89 Aligned_cols=114 Identities=17% Similarity=0.121 Sum_probs=91.6
Q ss_pred ecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccccee---EEe-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEE
Q 013871 191 PLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPI---LEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFW 266 (434)
Q Consensus 191 ~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~---~~~-~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iw 266 (434)
...++|.|.++.|+-||++++ +-++|..+++|++...+. ..| |...+-.+.|.|+ .+++++- +-+.++|
T Consensus 171 l~GHeG~iF~i~~s~dg~~i~--s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~ge---dctcrvW 243 (967)
T KOG0974|consen 171 LKGHEGSIFSIVTSLDGRYIA--SVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGE---DCTCRVW 243 (967)
T ss_pred ecccCCceEEEEEccCCcEEE--EEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEecc---ceEEEEE
Confidence 455799999999999999999 467889999999975443 234 7888899999999 8888984 4599999
Q ss_pred EccCCEEEEEeeCC---CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCce
Q 013871 267 DYVDGKQLGTTRAE---CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL 318 (434)
Q Consensus 267 d~~~~~~i~~~~~~---~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~ 318 (434)
+.+ ++.+..+..| .+..++.+++...++|++. |+++++|++.+..
T Consensus 244 ~~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~------Ds~lk~~~l~~r~ 291 (967)
T KOG0974|consen 244 GVN-GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGN------DSTLKLWDLNGRG 291 (967)
T ss_pred ecc-cceehhhhhhhhcceeEEEEcCCceEEEeecc------Ccchhhhhhhccc
Confidence 654 4555566665 5566899999889999998 9999999997653
No 304
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=97.90 E-value=0.00025 Score=66.29 Aligned_cols=87 Identities=15% Similarity=0.034 Sum_probs=64.5
Q ss_pred eeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEec-ccceeEEe---CCcCeeEEEECCCCCeEEEEecCCCCCe
Q 013871 187 EGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNK-KCRPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGD 262 (434)
Q Consensus 187 ~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~-~~~~~~~~---~~~~~~~i~~SP~g~~l~~~~~~~~~g~ 262 (434)
.+...+.+..-+.+++||||+++++ +.+.|.+|++-.. .+..+..| |+..|..++.-++ ..|+++|. |++
T Consensus 143 ~~~~~lGhvSml~dVavS~D~~~Ii--taDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sG---D~t 216 (390)
T KOG3914|consen 143 RCEPILGHVSMLLDVAVSPDDQFII--TADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSG---DKT 216 (390)
T ss_pred CcchhhhhhhhhheeeecCCCCEEE--EecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCC---CCc
Confidence 3445566677889999999997777 6888999988554 33444444 7788888888764 45777774 459
Q ss_pred EEEEEccCCEEEEEeeC
Q 013871 263 MAFWDYVDGKQLGTTRA 279 (434)
Q Consensus 263 i~iwd~~~~~~i~~~~~ 279 (434)
|++||..+++++.++..
T Consensus 217 lr~Wd~~sgk~L~t~dl 233 (390)
T KOG3914|consen 217 LRLWDITSGKLLDTCDL 233 (390)
T ss_pred EEEEecccCCcccccch
Confidence 99999999998876654
No 305
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.89 E-value=0.013 Score=58.16 Aligned_cols=242 Identities=12% Similarity=0.105 Sum_probs=131.6
Q ss_pred EEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECC
Q 013871 72 IQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNR 151 (434)
Q Consensus 72 i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~ 151 (434)
-.++|.+....... .-.+..+.+||+ +.++|+.....++.-..++++++.+ ++.+.. .+.......+.|.+
T Consensus 109 evllD~n~l~~~~~----~~~~~~~~~Spd-g~~la~~~s~~G~e~~~l~v~Dl~t---g~~l~d-~i~~~~~~~~~W~~ 179 (414)
T PF02897_consen 109 EVLLDPNELAKDGG----YVSLGGFSVSPD-GKRLAYSLSDGGSEWYTLRVFDLET---GKFLPD-GIENPKFSSVSWSD 179 (414)
T ss_dssp EEEEEGGGGSTTSS-----EEEEEEEETTT-SSEEEEEEEETTSSEEEEEEEETTT---TEEEEE-EEEEEESEEEEECT
T ss_pred EEEEcchHhhccCc----eEEeeeeeECCC-CCEEEEEecCCCCceEEEEEEECCC---CcCcCC-cccccccceEEEeC
Confidence 55667655432211 112446789999 6788877776666777899999987 544432 22222222399999
Q ss_pred CCCeEEEEEEecccccCceeecceeEEEEeeCCccee-eeecC-CCCC--eEEEEECcCCCEEEEEEccC-C-CeEEEEe
Q 013871 152 GSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEG-LVPLR-KEGP--VHDVQWSYSGSEFAVVYGFM-P-ASATIFN 225 (434)
Q Consensus 152 ~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~-~v~l~-~~~~--i~~v~wspdg~~~av~~g~~-~-~~v~l~d 225 (434)
+|+.+++....+......+.+ ...++...+...... .+-++ ...+ ...+..++|++++++..... . ..+.+.|
T Consensus 180 d~~~~~y~~~~~~~~~~~~~~-~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d 258 (414)
T PF02897_consen 180 DGKGFFYTRFDEDQRTSDSGY-PRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLD 258 (414)
T ss_dssp TSSEEEEEECSTTTSS-CCGC-CEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEE
T ss_pred CCCEEEEEEeCcccccccCCC-CcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEe
Confidence 999887754322111000111 123555544333222 22222 2222 56899999999888744433 3 3677778
Q ss_pred cccc-----eeEEe--CC-cCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCE----EEEEeeC-CCceEEEECCCCC
Q 013871 226 KKCR-----PILEL--GS-GPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK----QLGTTRA-ECSVTSEWSPDGR 292 (434)
Q Consensus 226 ~~~~-----~~~~~--~~-~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~----~i~~~~~-~~~~~~~wspdg~ 292 (434)
+... ....+ .. +....+... .+.+++....+..++.|.-.++.+.. ....+.. .......++..+.
T Consensus 259 ~~~~~~~~~~~~~l~~~~~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~ 337 (414)
T PF02897_consen 259 LDDGGSPDAKPKLLSPREDGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKD 337 (414)
T ss_dssp CCCTTTSS-SEEEEEESSSS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETT
T ss_pred ccccCCCcCCcEEEeCCCCceEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECC
Confidence 7653 22222 22 222333333 45566555554457888888888653 2122222 2445567777788
Q ss_pred EEEEEEcCCceeeCCcEEEEeec-Cceeeeeecccc
Q 013871 293 YFMTATTAPRLQIDNGIKIFHHN-GSLFFKKMFDKL 327 (434)
Q Consensus 293 ~l~tas~~prl~~D~~i~iw~~~-g~~~~~~~~~~~ 327 (434)
+|+..... .+...|+++++. +...........
T Consensus 338 ~Lvl~~~~---~~~~~l~v~~~~~~~~~~~~~~p~~ 370 (414)
T PF02897_consen 338 YLVLSYRE---NGSSRLRVYDLDDGKESREIPLPEA 370 (414)
T ss_dssp EEEEEEEE---TTEEEEEEEETT-TEEEEEEESSSS
T ss_pred EEEEEEEE---CCccEEEEEECCCCcEEeeecCCcc
Confidence 88877651 112358889999 777776655443
No 306
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=97.88 E-value=5.2e-05 Score=47.49 Aligned_cols=31 Identities=32% Similarity=0.752 Sum_probs=28.3
Q ss_pred eCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEE
Q 013871 234 LGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWD 267 (434)
Q Consensus 234 ~~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd 267 (434)
-|.+.+++|+|+|++++|++++ .|+.|++||
T Consensus 9 ~h~~~i~~i~~~~~~~~~~s~~---~D~~i~vwd 39 (39)
T PF00400_consen 9 GHSSSINSIAWSPDGNFLASGS---SDGTIRVWD 39 (39)
T ss_dssp SSSSSEEEEEEETTSSEEEEEE---TTSEEEEEE
T ss_pred CCCCcEEEEEEecccccceeeC---CCCEEEEEC
Confidence 3789999999999999999999 556999997
No 307
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=97.84 E-value=0.00081 Score=69.99 Aligned_cols=191 Identities=9% Similarity=0.050 Sum_probs=117.8
Q ss_pred ecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCc-CCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCCCCce
Q 013871 7 CLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNM-TKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDFPKGI 84 (434)
Q Consensus 7 fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~-~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~~~~~ 84 (434)
+.-+.+.++.+. .++.+.|||...+..+........ .-.....+.++++.-+++++ .-++|.+|+....+...
T Consensus 95 l~~e~k~i~l~~-----~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~ 169 (967)
T KOG0974|consen 95 LFEENKKIALVT-----SRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPI 169 (967)
T ss_pred hhhhcceEEEEE-----cCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcc
Confidence 444566777777 678899999877765554433210 00011134567788888887 45899999876333222
Q ss_pred eeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecc
Q 013871 85 LYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDV 164 (434)
Q Consensus 85 ~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~ 164 (434)
....|...+-++.+|-+ +.+++.+. .+..+|+|.+.+.
T Consensus 170 ~l~GHeG~iF~i~~s~d-g~~i~s~S-----dDRsiRlW~i~s~------------------------------------ 207 (967)
T KOG0974|consen 170 RLKGHEGSIFSIVTSLD-GRYIASVS-----DDRSIRLWPIDSR------------------------------------ 207 (967)
T ss_pred eecccCCceEEEEEccC-CcEEEEEe-----cCcceeeeecccc------------------------------------
Confidence 23344444555555554 33343332 2234555555441
Q ss_pred cccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeEEe--C-CcCeeE
Q 013871 165 DKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL--G-SGPYNT 241 (434)
Q Consensus 165 d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~~--~-~~~~~~ 241 (434)
.. ..-+-+.+...|.++.+.|+ +++ +...|-+.++|+..+.++..+ | ...+-.
T Consensus 208 -------------------~~-~~~~~fgHsaRvw~~~~~~n--~i~--t~gedctcrvW~~~~~~l~~y~~h~g~~iw~ 263 (967)
T KOG0974|consen 208 -------------------EV-LGCTGFGHSARVWACCFLPN--RII--TVGEDCTCRVWGVNGTQLEVYDEHSGKGIWK 263 (967)
T ss_pred -------------------cc-cCcccccccceeEEEEeccc--eeE--EeccceEEEEEecccceehhhhhhhhcceeE
Confidence 10 00122334788999999998 455 577888999998877666555 3 456778
Q ss_pred EEECCCCCeEEEEecCCCCCeEEEEEccCC
Q 013871 242 VRWNPKGKFLCLAGFGNLPGDMAFWDYVDG 271 (434)
Q Consensus 242 i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~ 271 (434)
++..++...+++++ .||.+++||+...
T Consensus 264 ~~~~~~~~~~vT~g---~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 264 IAVPIGVIIKVTGG---NDSTLKLWDLNGR 290 (967)
T ss_pred EEEcCCceEEEeec---cCcchhhhhhhcc
Confidence 89988888888888 5579999998753
No 308
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.82 E-value=0.03 Score=52.65 Aligned_cols=262 Identities=13% Similarity=0.140 Sum_probs=135.2
Q ss_pred CcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-----------CCeEEEEeCCCCCCceeeeeec----
Q 013871 26 KNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-----------TNEIQFFDTTDFPKGILYRLRV---- 90 (434)
Q Consensus 26 ~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-----------~~~i~v~~~~~~~~~~~~~~~~---- 90 (434)
..+.|.|..+++.+..+... -...+..|||++.++... .+-|.+||..+........+..
T Consensus 17 ~rv~viD~d~~k~lGmi~~g-----~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~ 91 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTG-----FLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRA 91 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEE-----SSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B-
T ss_pred ceEEEEECCCCcEEEEeecc-----cCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchh
Confidence 57999999999988877653 233577899999887541 1479999998854322222221
Q ss_pred ---CCeeEEEEeCCCCCeEEEE--ecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEE-EECCCCCeEEEEEEecc
Q 013871 91 ---PGVAAFEVSKAPGSHVAVF--VPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQL-NWNRGSTGLLAVAQSDV 164 (434)
Q Consensus 91 ---~~v~~~~~sp~~~~~ia~~--~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~-~ws~~G~~l~~~~~~~~ 164 (434)
.....+.+|++ +..+.++ .|. ..|.|.|+.. ++.+.....-. ...+ -+.+++ +..+| .
T Consensus 92 ~~~~~~~~~~ls~d-gk~~~V~N~TPa-----~SVtVVDl~~---~kvv~ei~~PG--C~~iyP~~~~~-F~~lC----~ 155 (342)
T PF06433_consen 92 QVVPYKNMFALSAD-GKFLYVQNFTPA-----TSVTVVDLAA---KKVVGEIDTPG--CWLIYPSGNRG-FSMLC----G 155 (342)
T ss_dssp -BS--GGGEEE-TT-SSEEEEEEESSS-----EEEEEEETTT---TEEEEEEEGTS--EEEEEEEETTE-EEEEE----T
T ss_pred eecccccceEEccC-CcEEEEEccCCC-----CeEEEEECCC---CceeeeecCCC--EEEEEecCCCc-eEEEe----c
Confidence 12334678887 5555554 443 3688888876 44444332211 1111 111111 11111 1
Q ss_pred cccCceeecceeEEEEeeCCcce----eeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeE-----Ee-
Q 013871 165 DKTNQSYYGESKLNYLTTDGTHE----GLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPIL-----EL- 234 (434)
Q Consensus 165 d~~~~~~~g~~~l~~l~~~~~~~----~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~-----~~- 234 (434)
|.+.. ...++..|... ..+..+.+-.+..-+++..+..+.++ .+ .|.|+-.|+.+.... ++
T Consensus 156 DGsl~-------~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~-Sy-~G~v~~~dlsg~~~~~~~~~~~~ 226 (342)
T PF06433_consen 156 DGSLL-------TVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFV-SY-EGNVYSADLSGDSAKFGKPWSLL 226 (342)
T ss_dssp TSCEE-------EEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEE-BT-TSEEEEEEETTSSEEEEEEEESS
T ss_pred CCceE-------EEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEE-ec-CCEEEEEeccCCcccccCccccc
Confidence 21111 11222222211 11111112222345566555556543 22 567777777543321 11
Q ss_pred ---------CCcCeeEEEECCCCCeEEEE-e---cCC-CC--CeEEEEEccCCEEEEEeeC-CCceEEEECCCCCEEEEE
Q 013871 235 ---------GSGPYNTVRWNPKGKFLCLA-G---FGN-LP--GDMAFWDYVDGKQLGTTRA-ECSVTSEWSPDGRYFMTA 297 (434)
Q Consensus 235 ---------~~~~~~~i~~SP~g~~l~~~-~---~~~-~~--g~i~iwd~~~~~~i~~~~~-~~~~~~~wspdg~~l~ta 297 (434)
-.+...-+++++..+.|.+. . .++ .+ -.|.++|+.+++.+..+.. +.+..++.|.|.+=++.+
T Consensus 227 t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~ 306 (342)
T PF06433_consen 227 TDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYA 306 (342)
T ss_dssp -HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEE
T ss_pred CccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEE
Confidence 12334568888765544442 1 111 12 3578889999999998875 355578999998855544
Q ss_pred -EcCCceeeCCcEEEEee-cCceeeee
Q 013871 298 -TTAPRLQIDNGIKIFHH-NGSLFFKK 322 (434)
Q Consensus 298 -s~~prl~~D~~i~iw~~-~g~~~~~~ 322 (434)
+.. ++.+.|||. +|+++...
T Consensus 307 ~~~~-----~~~l~v~D~~tGk~~~~~ 328 (342)
T PF06433_consen 307 LSAG-----DGTLDVYDAATGKLVRSI 328 (342)
T ss_dssp EETT-----TTEEEEEETTT--EEEEE
T ss_pred EcCC-----CCeEEEEeCcCCcEEeeh
Confidence 332 678999998 67776654
No 309
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.79 E-value=0.00024 Score=71.17 Aligned_cols=284 Identities=12% Similarity=0.142 Sum_probs=158.9
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCC-CcEEEEEeecCcCCCCCCeeeecCCC---cEEEEecCCeEEEEeC
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTET-GEAVYQLFQKNMTKTTWPSIRFSSDE---AVACRMATNEIQFFDT 77 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~-g~~~~~~~~~~~~~~~~~~~~~S~d~---~~la~~~~~~i~v~~~ 77 (434)
+.++..+|.|+-+|++++. .+.|-|+.. +...+-+.+. +.-.+..++||+.. ..++.-+...-.+|++
T Consensus 27 ~~a~si~p~grdi~lAsr~------gl~i~dld~p~~ppr~l~h~--tpw~vad~qws~h~a~~~wiVsts~qkaiiwnl 98 (1081)
T KOG0309|consen 27 FNAVSINPSGRDIVLASRQ------GLYIIDLDDPFTPPRWLHHI--TPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNL 98 (1081)
T ss_pred ccceeeccccchhhhhhhc------CeEEEeccCCCCCceeeecc--CcchhcceecccCCCCceeEEecCcchhhhhhh
Confidence 3577889999988887743 366667654 3332222221 11223357888754 3455445556778886
Q ss_pred CCCCC---ceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCC
Q 013871 78 TDFPK---GILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGST 154 (434)
Q Consensus 78 ~~~~~---~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~ 154 (434)
...+. ......|..+|+++.|.|.....++.. ..+..|..|++.+. ..++....-......+++||-..-
T Consensus 99 A~ss~~aIef~lhghsraitd~n~~~q~pdVlatc-----svdt~vh~wd~rSp--~~p~ys~~~w~s~asqVkwnyk~p 171 (1081)
T KOG0309|consen 99 AKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATC-----SVDTYVHAWDMRSP--HRPFYSTSSWRSAASQVKWNYKDP 171 (1081)
T ss_pred hcCCccceEEEEecCccceeccccCCCCCcceeec-----cccccceeeeccCC--CcceeeeecccccCceeeecccCc
Confidence 43221 123344566899999999855555532 33456788998663 566666665666677899987655
Q ss_pred eEEEEEEecccccCceeecceeEEEEeeCCcceeeeecC-CCCCeEEEEECcCC-CEEEEEEccCCCeEEEEeccc---c
Q 013871 155 GLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR-KEGPVHDVQWSYSG-SEFAVVYGFMPASATIFNKKC---R 229 (434)
Q Consensus 155 ~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~-~~~~i~~v~wspdg-~~~av~~g~~~~~v~l~d~~~---~ 229 (434)
.+++.. . |. .++.++...+......+. +-..|+.++|..-- .++. +..+|++|.+||-.. +
T Consensus 172 ~vlass---h--------g~-~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~--s~~~d~tvkfw~y~kSt~e 237 (1081)
T KOG0309|consen 172 NVLASS---H--------GN-DIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIM--SSSNDGTVKFWDYSKSTTE 237 (1081)
T ss_pred chhhhc---c--------CC-ceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhc--ccCCCCceeeecccccccc
Confidence 544321 1 11 123333322222222222 12344555554321 1222 578899999998742 2
Q ss_pred eeEEe-CCcCeeEEEECCCCCeEEEE-ecCCCCCeEEE---------EEccCC-EEEEEeeCCC--ceEEEECCCCC---
Q 013871 230 PILEL-GSGPYNTVRWNPKGKFLCLA-GFGNLPGDMAF---------WDYVDG-KQLGTTRAEC--SVTSEWSPDGR--- 292 (434)
Q Consensus 230 ~~~~~-~~~~~~~i~~SP~g~~l~~~-~~~~~~g~i~i---------wd~~~~-~~i~~~~~~~--~~~~~wspdg~--- 292 (434)
.-+.. ...++---+|-|-|+-.++- ..|. ..+-+ |++.++ ..++.+.+|. +..+.|--.++
T Consensus 238 ~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~--n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~ 315 (1081)
T KOG0309|consen 238 SKRTVTTNFPIWRGRYLPFGEGYCIMPMVGG--NMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDG 315 (1081)
T ss_pred cceeccccCcceeccccccCceeEeccccCC--eeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccC
Confidence 22222 34566667778877743332 1111 12333 333333 5788888883 23355544333
Q ss_pred -------EEEEEEcCCceeeCCcEEEEeecCceeeee
Q 013871 293 -------YFMTATTAPRLQIDNGIKIFHHNGSLFFKK 322 (434)
Q Consensus 293 -------~l~tas~~prl~~D~~i~iw~~~g~~~~~~ 322 (434)
.|+|-+. |..+|+|-+....+...
T Consensus 316 d~d~rdfQLVTWSk------D~~lrlWpI~~~i~~~~ 346 (1081)
T KOG0309|consen 316 DYDSRDFQLVTWSK------DQTLRLWPIDSQIQRLC 346 (1081)
T ss_pred CCCccceeEEEeec------CCceEeeeccHHHHHhh
Confidence 5788888 99999999876644433
No 310
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.75 E-value=0.00079 Score=68.65 Aligned_cols=111 Identities=12% Similarity=0.100 Sum_probs=76.9
Q ss_pred EEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCCCCc
Q 013871 5 LTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDFPKG 83 (434)
Q Consensus 5 l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~~~~ 83 (434)
.+|+|..-+++..+ .+....+.|.|+- .+|++-+..... -...+++|.|..-.|+.+ .-+.+.||.....+.-
T Consensus 21 ~SWHPsePlfAVA~-fS~er~GSVtIfa-dtGEPqr~Vt~P----~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~h 94 (1416)
T KOG3617|consen 21 SSWHPSEPLFAVAS-FSPERGGSVTIFA-DTGEPQRDVTYP----VHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETH 94 (1416)
T ss_pred cccCCCCceeEEEE-ecCCCCceEEEEe-cCCCCCcccccc----eehhhhccChHHHHHhhccccceeEEEecCCceee
Confidence 46889998888765 2233457899984 788754322211 223478999999988888 4589999998774432
Q ss_pred eeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCC
Q 013871 84 ILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGK 127 (434)
Q Consensus 84 ~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~ 127 (434)
.+..-|...|..+.||++++..+. ...++.|.+|.+..
T Consensus 95 tv~~th~a~i~~l~wS~~G~~l~t------~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 95 TVVETHPAPIQGLDWSHDGTVLMT------LDNPGSVHLWRYDV 132 (1416)
T ss_pred eeccCCCCCceeEEecCCCCeEEE------cCCCceeEEEEeee
Confidence 223334557889999999654443 46788999999874
No 311
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=97.72 E-value=0.0027 Score=64.31 Aligned_cols=258 Identities=10% Similarity=0.056 Sum_probs=135.3
Q ss_pred eEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCC------C-----c-EEEEe-cCC
Q 013871 4 LLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSD------E-----A-VACRM-ATN 70 (434)
Q Consensus 4 ~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d------~-----~-~la~~-~~~ 70 (434)
++.|||.| .|+.++ ...|.|-|..+-+.+.++..++ ..+..+.|+|- . . ++|++ ..|
T Consensus 20 A~Dw~~~G-LiAygs------hslV~VVDs~s~q~iqsie~h~---s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~G 89 (1062)
T KOG1912|consen 20 AADWSPSG-LIAYGS------HSLVSVVDSRSLQLIQSIELHQ---SAVTSVRWAPAPSPRDLLSPSSSQLLIASADISG 89 (1062)
T ss_pred ccccCccc-eEEEec------CceEEEEehhhhhhhhccccCc---cceeEEEeccCCCchhccCccccceeEEeccccC
Confidence 56788866 444443 4678888988888888877654 67778999762 1 2 33333 347
Q ss_pred eEEEEeCCCCCCceeeeeecCCeeEEEEeCCCC---CeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEE
Q 013871 71 EIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPG---SHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQL 147 (434)
Q Consensus 71 ~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~---~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~ 147 (434)
.|.+||............+...+.++.|-|..+ ..++.. ..+..+.+|+..+ ++.+=..+.....-.++
T Consensus 90 rIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaI-----h~ss~lvLwntdt---G~k~Wk~~ys~~iLs~f 161 (1062)
T KOG1912|consen 90 RIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAI-----HGSSTLVLWNTDT---GEKFWKYDYSHEILSCF 161 (1062)
T ss_pred cEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEe-----cCCcEEEEEEccC---CceeeccccCCcceeee
Confidence 999999765433223333445567777766532 223222 3346788898776 44332222222222234
Q ss_pred EECC-CCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCE-----EEEEEccCCCeE
Q 013871 148 NWNR-GSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSE-----FAVVYGFMPASA 221 (434)
Q Consensus 148 ~ws~-~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~-----~av~~g~~~~~v 221 (434)
.+.| |..+++++.+. | -+...+..+..+ ..++.+.++.+.+-.. ...++|..
T Consensus 162 ~~DPfd~rh~~~l~s~----------g--~vl~~~~l~~se------p~~pgk~~qI~sd~Sdl~~lere~at~ns---- 219 (1062)
T KOG1912|consen 162 RVDPFDSRHFCVLGSK----------G--FVLSCKDLGLSE------PDVPGKEFQITSDHSDLAHLERETATGNS---- 219 (1062)
T ss_pred eeCCCCcceEEEEccC----------c--eEEEEeccCCCC------CCCCceeEEEecCccchhhhhhhhhcccc----
Confidence 4444 22333333211 0 011111112111 1233333333322111 11111100
Q ss_pred EEEecccceeEEeCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCE--EEEE
Q 013871 222 TIFNKKCRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRY--FMTA 297 (434)
Q Consensus 222 ~l~d~~~~~~~~~~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~--l~ta 297 (434)
-..+..-..|.. ..-.++|+|.-+.++...+.. .+.|+|++-..++....-+ ++-.+.|-||++. |...
T Consensus 220 ---~ts~~~sa~fit-y~a~faf~p~~rn~lfi~~pr---ellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~Lfcl 292 (1062)
T KOG1912|consen 220 ---TTSTPASAYFIT-YCAQFAFSPHWRNILFITFPR---ELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCL 292 (1062)
T ss_pred ---ccCCCcchhHHH-HHHhhhcChhhhceEEEEecc---ceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEE
Confidence 000011001100 123478999998887777554 8999999877777665443 5556899998764 4444
Q ss_pred EcCCceeeCCcEEEEee
Q 013871 298 TTAPRLQIDNGIKIFHH 314 (434)
Q Consensus 298 s~~prl~~D~~i~iw~~ 314 (434)
.. ||.+-||--
T Consensus 293 H~------nG~ltirvr 303 (1062)
T KOG1912|consen 293 HS------NGRLTIRVR 303 (1062)
T ss_pred ec------CCeEEEEEe
Confidence 44 899999975
No 312
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.71 E-value=0.0016 Score=67.01 Aligned_cols=160 Identities=14% Similarity=0.118 Sum_probs=91.6
Q ss_pred ceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEcc------
Q 013871 143 STVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGF------ 216 (434)
Q Consensus 143 ~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~------ 216 (434)
.......+|+|+.+++.... .|.... ....||..+..+.. ..+.- ........|+|||+.++++...
T Consensus 351 ~vsspaiSpdG~~vA~v~~~-~~~~~d---~~s~Lwv~~~gg~~-~~lt~--g~~~t~PsWspDG~~lw~v~dg~~~~~v 423 (591)
T PRK13616 351 NITSAALSRSGRQVAAVVTL-GRGAPD---PASSLWVGPLGGVA-VQVLE--GHSLTRPSWSLDADAVWVVVDGNTVVRV 423 (591)
T ss_pred CcccceECCCCCEEEEEEee-cCCCCC---cceEEEEEeCCCcc-eeeec--CCCCCCceECCCCCceEEEecCcceEEE
Confidence 34567789999999877543 222211 23457877754432 33322 2347889999999988765421
Q ss_pred ----CCCeEEEEecccceeEEeCCcCeeEEEECCCCCeEEEEecCCCCCeEEE---EEccCCE-EEE---Ee-eC-CC-c
Q 013871 217 ----MPASATIFNKKCRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAF---WDYVDGK-QLG---TT-RA-EC-S 282 (434)
Q Consensus 217 ----~~~~v~l~d~~~~~~~~~~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~i---wd~~~~~-~i~---~~-~~-~~-~ 282 (434)
..+.+.+.+++......-..+.+..+.|||||..|++.. .|.|++ -....++ .+. .+ .. .. +
T Consensus 424 ~~~~~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~----~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~ 499 (591)
T PRK13616 424 IRDPATGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMII----GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTA 499 (591)
T ss_pred eccCCCceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEE----CCEEEEEEEEeCCCCceeecccEEeecccCCcc
Confidence 112333334443222211246799999999999888765 257887 4444553 121 11 11 12 4
Q ss_pred eEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCce
Q 013871 283 VTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL 318 (434)
Q Consensus 283 ~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~ 318 (434)
..+.|..++..+ +++.. .+..+..-.++|..
T Consensus 500 ~~l~W~~~~~L~-V~~~~----~~~~v~~v~vDG~~ 530 (591)
T PRK13616 500 VSLDWRTGDSLV-VGRSD----PEHPVWYVNLDGSN 530 (591)
T ss_pred ccceEecCCEEE-EEecC----CCCceEEEecCCcc
Confidence 669999999954 55541 13334444456653
No 313
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=97.71 E-value=0.00044 Score=75.80 Aligned_cols=196 Identities=11% Similarity=0.145 Sum_probs=121.1
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCC
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDF 80 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~ 80 (434)
|.++.=+|...|-+|.+ .|+.|++|....++.+..+..... ..+..+.|+..|.-+..+ +||.|-+|.....
T Consensus 2211 v~r~~sHp~~~~Yltgs-----~dgsv~~~~w~~~~~v~~~rt~g~--s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk 2283 (2439)
T KOG1064|consen 2211 VRRMTSHPSDPYYLTGS-----QDGSVRMFEWGHGQQVVCFRTAGN--SRVTRSRFNHQGNKFGIVDGDGDLSLWQASPK 2283 (2439)
T ss_pred eeeecCCCCCceEEecC-----CCceEEEEeccCCCeEEEeeccCc--chhhhhhhcccCCceeeeccCCceeecccCCc
Confidence 34455567677777776 899999999998988888766543 667788999999877766 6789999998731
Q ss_pred CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEE
Q 013871 81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVA 160 (434)
Q Consensus 81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~ 160 (434)
. ....+.|..+..+|.|-.. .++ ..+.....+.+.+||.-.
T Consensus 2284 ~-~~s~qchnk~~~Df~Fi~s---~~~--tag~s~d~~n~~lwDtl~--------------------------------- 2324 (2439)
T KOG1064|consen 2284 P-YTSWQCHNKALSDFRFIGS---LLA--TAGRSSDNRNVCLWDTLL--------------------------------- 2324 (2439)
T ss_pred c-eeccccCCccccceeeeeh---hhh--ccccCCCCCcccchhccc---------------------------------
Confidence 1 1112233333344433221 011 111111222333333211
Q ss_pred EecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccccee-EEeCCcCe
Q 013871 161 QSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPI-LELGSGPY 239 (434)
Q Consensus 161 ~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~-~~~~~~~~ 239 (434)
.+. ...+..-+.+.+..+++-|.-..|+ +|+.+|.|.+||++..++ +.+..
T Consensus 2325 ----------------------~~~-~s~v~~~H~~gaT~l~~~P~~qlli--sggr~G~v~l~D~rqrql~h~~~~--- 2376 (2439)
T KOG1064|consen 2325 ----------------------PPM-NSLVHTCHDGGATVLAYAPKHQLLI--SGGRKGEVCLFDIRQRQLRHTFQA--- 2376 (2439)
T ss_pred ----------------------Ccc-cceeeeecCCCceEEEEcCcceEEE--ecCCcCcEEEeehHHHHHHHHhhh---
Confidence 000 1111122367788899999766665 799999999999986543 33322
Q ss_pred eEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC
Q 013871 240 NTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA 279 (434)
Q Consensus 240 ~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~ 279 (434)
+. .-.+++.+. ..|+|.||++.....+.++..
T Consensus 2377 ----~~-~~~~f~~~s---s~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2377 ----LD-TREYFVTGS---SEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred ----hh-hhheeeccC---cccceEEEEccccchhhcCch
Confidence 33 345777766 778999999988777766654
No 314
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=97.68 E-value=0.0074 Score=54.56 Aligned_cols=129 Identities=17% Similarity=0.202 Sum_probs=87.9
Q ss_pred eEEEEECcCCCEEEEEEccCCCeEEEEecccc-----eeEEeCCcCeeEEEECCCCC-eEEEEecCCCCCeEEEEEcc-C
Q 013871 198 VHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-----PILELGSGPYNTVRWNPKGK-FLCLAGFGNLPGDMAFWDYV-D 270 (434)
Q Consensus 198 i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~-----~~~~~~~~~~~~i~~SP~g~-~l~~~~~~~~~g~i~iwd~~-~ 270 (434)
..++.|++.|..+++ +...+.+.+-+.+.. +..+-|.-..-.+.|+-... ++.+|| .||.+..||++ .
T Consensus 124 ~lslD~~~~~~~i~v--s~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGg---DD~~l~~~D~R~p 198 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFV--SDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGG---DDGSLSCWDIRIP 198 (339)
T ss_pred eeEEEeeccCceEEE--EcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecC---CCceEEEEEecCC
Confidence 457899999988774 555677764433211 12223666677777776554 666666 56899999998 4
Q ss_pred CEEEEE---eeCCCceEEEEC-CCCCEEEEEEcCCceeeCCcEEEEeec--Cceeeeeec-ccceeeEEEcCCC
Q 013871 271 GKQLGT---TRAECSVTSEWS-PDGRYFMTATTAPRLQIDNGIKIFHHN--GSLFFKKMF-DKLFQAEWKPVSP 337 (434)
Q Consensus 271 ~~~i~~---~~~~~~~~~~ws-pdg~~l~tas~~prl~~D~~i~iw~~~--g~~~~~~~~-~~~~~~~w~p~~~ 337 (434)
++.+.. ....++.++.=| |++.+|+||+. |..|++||.. |+.++.... ..+|.+.|.|.-.
T Consensus 199 ~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsY------De~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~ 266 (339)
T KOG0280|consen 199 KTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSY------DECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIF 266 (339)
T ss_pred cceeeecceeeecceEEEecCCCCCceEEEecc------ccceeeeehhcccCccccCccccceEEEEecchhh
Confidence 444443 122255554444 56889999999 9999999984 677776544 5799999999765
No 315
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.67 E-value=0.0017 Score=61.73 Aligned_cols=245 Identities=15% Similarity=0.192 Sum_probs=142.2
Q ss_pred CCcEEEEEecCCCCCCCcEEEEEcC--CCcE-EEEEeecCcCCCCCCeeeecCCCcEEEEec--CCeEEEEeCCCCCCce
Q 013871 10 VGLIIQTFQKSSTPQEKNVILWKTE--TGEA-VYQLFQKNMTKTTWPSIRFSSDEAVACRMA--TNEIQFFDTTDFPKGI 84 (434)
Q Consensus 10 ~g~~L~t~~~~~~~~d~~v~iWd~~--~g~~-~~~~~~~~~~~~~~~~~~~S~d~~~la~~~--~~~i~v~~~~~~~~~~ 84 (434)
..+|+.+++ .|+.++.|.-. +|.. +..|.. |...+..++-|-|+.++++.. +..+++||+.++....
T Consensus 19 ka~fiiqAS-----lDGh~KFWkKs~isGvEfVKhFra---HL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~Dmin 90 (558)
T KOG0882|consen 19 KAKFIIQAS-----LDGHKKFWKKSRISGVEFVKHFRA---HLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMIN 90 (558)
T ss_pred hhheEEeee-----cchhhhhcCCCCccceeehhhhHH---HHHHHHhhhccccceeEeeccCcccceeEEEeeccchhh
Confidence 456777777 89999999742 2221 222222 224555677788999999864 5699999998876543
Q ss_pred eeeee-cCCeeEEEEeCCCC-CeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEe
Q 013871 85 LYRLR-VPGVAAFEVSKAPG-SHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQS 162 (434)
Q Consensus 85 ~~~~~-~~~v~~~~~sp~~~-~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~ 162 (434)
..++. +++.....-+|+.. ..||+-.. ..+.+.+++--... .+....+.+|...+..+..++-|..++..
T Consensus 91 miKL~~lPg~a~wv~skGd~~s~IAVs~~----~sg~i~VvD~~~d~-~q~~~fkklH~sPV~~i~y~qa~Ds~vSi--- 162 (558)
T KOG0882|consen 91 MIKLVDLPGFAEWVTSKGDKISLIAVSLF----KSGKIFVVDGFGDF-CQDGYFKKLHFSPVKKIRYNQAGDSAVSI--- 162 (558)
T ss_pred hcccccCCCceEEecCCCCeeeeEEeecc----cCCCcEEECCcCCc-CccceecccccCceEEEEeeccccceeec---
Confidence 33333 45555555555421 13333221 23456666643321 35566677778888889999888865432
Q ss_pred cccccCceeecceeEEEE------eeCCcceeeeecCC-CCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeEE--
Q 013871 163 DVDKTNQSYYGESKLNYL------TTDGTHEGLVPLRK-EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILE-- 233 (434)
Q Consensus 163 ~~d~~~~~~~g~~~l~~l------~~~~~~~~~v~l~~-~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~-- 233 (434)
+...-..-|.++..+... +.... .-.....+ .....++.|+|+|..+..+ ..|.+|++|+.++..+.+
T Consensus 163 D~~gmVEyWs~e~~~qfPr~~l~~~~K~e-TdLy~f~K~Kt~pts~Efsp~g~qistl--~~DrkVR~F~~KtGklvqei 239 (558)
T KOG0882|consen 163 DISGMVEYWSAEGPFQFPRTNLNFELKHE-TDLYGFPKAKTEPTSFEFSPDGAQISTL--NPDRKVRGFVFKTGKLVQEI 239 (558)
T ss_pred cccceeEeecCCCcccCcccccccccccc-chhhcccccccCccceEEccccCccccc--CcccEEEEEEeccchhhhhh
Confidence 111222223222111110 00000 00111111 4566799999999999964 367899999876433211
Q ss_pred ---------------------e-------------CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEe
Q 013871 234 ---------------------L-------------GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTT 277 (434)
Q Consensus 234 ---------------------~-------------~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~ 277 (434)
+ +...-..+.|...|++|+.+..= -|++.++.++++++.+
T Consensus 240 DE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~----gikvin~~tn~v~ri~ 313 (558)
T KOG0882|consen 240 DEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTIL----GIKVINLDTNTVVRIL 313 (558)
T ss_pred hccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecce----eEEEEEeecCeEEEEe
Confidence 0 01122458899999999988743 3899999988766554
No 316
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.67 E-value=0.047 Score=53.95 Aligned_cols=71 Identities=10% Similarity=0.217 Sum_probs=51.8
Q ss_pred EEecCCCcEEEEEecCCC-----CCCC-cEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCC
Q 013871 5 LTCLRVGLIIQTFQKSST-----PQEK-NVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTT 78 (434)
Q Consensus 5 l~fSP~g~~L~t~~~~~~-----~~d~-~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~ 78 (434)
++.+|.|.-+|....... .... .|.||+ ..|+.+.++.-.. ..+..+.|+.++.+++...+|.+++|+..
T Consensus 34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys-~sG~ll~~i~w~~---~~iv~~~wt~~e~LvvV~~dG~v~vy~~~ 109 (410)
T PF04841_consen 34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYS-SSGKLLSSIPWDS---GRIVGMGWTDDEELVVVQSDGTVRVYDLF 109 (410)
T ss_pred EEEcCCCceEEEEecCcccccccCCCCcEEEEEC-CCCCEeEEEEECC---CCEEEEEECCCCeEEEEEcCCEEEEEeCC
Confidence 566788887877653211 1123 499998 5688888876654 44449999999999998999999999975
Q ss_pred C
Q 013871 79 D 79 (434)
Q Consensus 79 ~ 79 (434)
.
T Consensus 110 G 110 (410)
T PF04841_consen 110 G 110 (410)
T ss_pred C
Confidence 3
No 317
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=97.53 E-value=0.0051 Score=62.43 Aligned_cols=301 Identities=12% Similarity=0.122 Sum_probs=158.5
Q ss_pred EEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCc--EEEEe-cCCeEEEEeCCCCC
Q 013871 5 LTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEA--VACRM-ATNEIQFFDTTDFP 81 (434)
Q Consensus 5 l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~--~la~~-~~~~i~v~~~~~~~ 81 (434)
++|||.=+.++... .-..+.|+|++-..++....-.. ...+.++|-||.+ .|.++ .+|.+.||-.....
T Consensus 236 faf~p~~rn~lfi~-----~prellv~dle~~~~l~vvpier---~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~ 307 (1062)
T KOG1912|consen 236 FAFSPHWRNILFIT-----FPRELLVFDLEYECCLAVVPIER---GGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEP 307 (1062)
T ss_pred hhcChhhhceEEEE-----eccceEEEcchhhceeEEEEecc---CCcceeEeccCCCcceEEEEecCCeEEEEEeeccC
Confidence 46788655444433 33679999998888888776654 5666789998875 44444 67888888754321
Q ss_pred Cceee---eeecC---CeeEEEEeCCCCCeEEEEecCCCC------CCceEEEEEcCCCCCCCceeeeeecccceeEEEE
Q 013871 82 KGILY---RLRVP---GVAAFEVSKAPGSHVAVFVPESKG------SPASVQIYACGKDLQSQPLARRSFFRCSTVQLNW 149 (434)
Q Consensus 82 ~~~~~---~~~~~---~v~~~~~sp~~~~~ia~~~~~~~~------~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~w 149 (434)
..... .+..+ .+..+..--.-.+.++..+|.+.. ..+.+.+|++.+.. -..-..+.+-.....+.|
T Consensus 308 ~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~r--i~~~~~s~~iel~~pf~f 385 (1062)
T KOG1912|consen 308 TEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGR--IHLDYRSSSIELVLPFDF 385 (1062)
T ss_pred ccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCC--cCcccccccccccccccc
Confidence 11111 11111 111111100001222222332111 22456677776421 000001101111112222
Q ss_pred CCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEE--EE-ECcCCCE-----EEEEEccCCCeE
Q 013871 150 NRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHD--VQ-WSYSGSE-----FAVVYGFMPASA 221 (434)
Q Consensus 150 s~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~--v~-wspdg~~-----~av~~g~~~~~v 221 (434)
.+..+++ +++.+..+..+|.+..-..+.+..++-. +. --|.|+. -.+.-|...|+|
T Consensus 386 --~~~~~~v--------------~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV 449 (1062)
T KOG1912|consen 386 --NLSTKLV--------------GKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTV 449 (1062)
T ss_pred --cCceeeh--------------hhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceE
Confidence 2222222 2233444444443322222221111111 11 1122221 122248888999
Q ss_pred EEEecccceeE---EeCCcCeeEEEECCCCCeEEEEecC------CCCCeEEEEEccCCE--EEEEeeCC---CceEEEE
Q 013871 222 TIFNKKCRPIL---ELGSGPYNTVRWNPKGKFLCLAGFG------NLPGDMAFWDYVDGK--QLGTTRAE---CSVTSEW 287 (434)
Q Consensus 222 ~l~d~~~~~~~---~~~~~~~~~i~~SP~g~~l~~~~~~------~~~g~i~iwd~~~~~--~i~~~~~~---~~~~~~w 287 (434)
-++|+..+.++ ..|.+.+.++.|--..+++-.+-.. .....+.+-|+.+|. .+...+.. .+..+.-
T Consensus 450 ~vvdvst~~v~~~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~despI~~irv 529 (1062)
T KOG1912|consen 450 DVVDVSTNAVAASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDESPIRAIRV 529 (1062)
T ss_pred EEEEecchhhhhhhcccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccccccCCCCCcCcceeeee
Confidence 99999877654 4488999999998776665443211 123467888999883 33333333 4455899
Q ss_pred CCCCCEEEEEEcCCceeeCCcEEEEeecCcee-eee--ecccceeeEEE-cCCC
Q 013871 288 SPDGRYFMTATTAPRLQIDNGIKIFHHNGSLF-FKK--MFDKLFQAEWK-PVSP 337 (434)
Q Consensus 288 spdg~~l~tas~~prl~~D~~i~iw~~~g~~~-~~~--~~~~~~~~~w~-p~~~ 337 (434)
|.-|+||+..-. |.-+-|||+.+..+ ..+ ..+-+..+.|. |.-+
T Consensus 530 S~~~~yLai~Fr------~~plEiwd~kt~~~lr~mS~a~P~it~leWsl~~~~ 577 (1062)
T KOG1912|consen 530 SSSGRYLAILFR------REPLEIWDLKTLRMLRLMSLALPLITVLEWSLPKHP 577 (1062)
T ss_pred cccCceEEEEec------ccchHHHhhccchHHHHHhhcCCcEEEEeecccCCC
Confidence 999999999998 99999999966543 332 44568889999 5433
No 318
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=97.52 E-value=0.0019 Score=60.54 Aligned_cols=81 Identities=11% Similarity=0.143 Sum_probs=57.2
Q ss_pred CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEe-eCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEE
Q 013871 235 GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTT-RAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKI 311 (434)
Q Consensus 235 ~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~-~~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~i 311 (434)
|-.-+..++||||+++|+++..| ..|+|-....--.|..+ -+| -+..++.-++ +.|++++. |+++++
T Consensus 150 hvSml~dVavS~D~~~IitaDRD---EkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sG------D~tlr~ 219 (390)
T KOG3914|consen 150 HVSMLLDVAVSPDDQFIITADRD---EKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSG------DKTLRL 219 (390)
T ss_pred hhhhhheeeecCCCCEEEEecCC---ceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCC------CCcEEE
Confidence 55667899999999999999855 58988654433223222 223 5555666554 66899998 999999
Q ss_pred Eee-cCceeeeeecc
Q 013871 312 FHH-NGSLFFKKMFD 325 (434)
Q Consensus 312 w~~-~g~~~~~~~~~ 325 (434)
||+ +|++++..+..
T Consensus 220 Wd~~sgk~L~t~dl~ 234 (390)
T KOG3914|consen 220 WDITSGKLLDTCDLS 234 (390)
T ss_pred EecccCCcccccchh
Confidence 999 67777655443
No 319
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.50 E-value=0.00029 Score=71.66 Aligned_cols=110 Identities=19% Similarity=0.234 Sum_probs=81.3
Q ss_pred EEEECcCCCEEEEEEc--cCCCeEEEEecccceeEEeC-CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEE
Q 013871 200 DVQWSYSGSEFAVVYG--FMPASATIFNKKCRPILELG-SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGT 276 (434)
Q Consensus 200 ~v~wspdg~~~av~~g--~~~~~v~l~d~~~~~~~~~~-~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~ 276 (434)
-..|+|....|+|.+= ...|.|+||--.+++-.+.. .-.+.+++|+|..-.|+.+- ..|.+.||...+.+.-..
T Consensus 20 i~SWHPsePlfAVA~fS~er~GSVtIfadtGEPqr~Vt~P~hatSLCWHpe~~vLa~gw---e~g~~~v~~~~~~e~htv 96 (1416)
T KOG3617|consen 20 ISSWHPSEPLFAVASFSPERGGSVTIFADTGEPQRDVTYPVHATSLCWHPEEFVLAQGW---EMGVSDVQKTNTTETHTV 96 (1416)
T ss_pred ccccCCCCceeEEEEecCCCCceEEEEecCCCCCcccccceehhhhccChHHHHHhhcc---ccceeEEEecCCceeeee
Confidence 4689999999998642 24468999966666554442 33456799999766666554 458999999888766554
Q ss_pred eeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec--Cce
Q 013871 277 TRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN--GSL 318 (434)
Q Consensus 277 ~~~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~--g~~ 318 (434)
...| .+..+.|||||..++|+.. -+.+.+|.++ |+.
T Consensus 97 ~~th~a~i~~l~wS~~G~~l~t~d~------~g~v~lwr~d~~g~~ 136 (1416)
T KOG3617|consen 97 VETHPAPIQGLDWSHDGTVLMTLDN------PGSVHLWRYDVIGEI 136 (1416)
T ss_pred ccCCCCCceeEEecCCCCeEEEcCC------CceeEEEEeeecccc
Confidence 4444 5566999999999999988 8999999997 653
No 320
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.48 E-value=0.00022 Score=72.88 Aligned_cols=268 Identities=12% Similarity=0.124 Sum_probs=154.1
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC--C-eEEEEeCC
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT--N-EIQFFDTT 78 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~--~-~i~v~~~~ 78 (434)
.+|++||-+.++|+.+. ..+.|+++++.+|....++..+ +..++.+.=|-||..+.+.+. . -..+|++.
T Consensus 1104 fTc~afs~~~~hL~vG~-----~~Geik~~nv~sG~~e~s~ncH---~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~ 1175 (1516)
T KOG1832|consen 1104 FTCIAFSGGTNHLAVGS-----HAGEIKIFNVSSGSMEESVNCH---QSAVTLVEPSVDGSTQLTSSSSSSPLSALWDAS 1175 (1516)
T ss_pred eeeEEeecCCceEEeee-----ccceEEEEEccCcccccccccc---ccccccccccCCcceeeeeccccCchHHHhccc
Confidence 47999999999999988 7899999999999887776554 477778888999998887643 2 57889986
Q ss_pred CCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceee-ee---ecccceeEEEECCCCC
Q 013871 79 DFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLAR-RS---FFRCSTVQLNWNRGST 154 (434)
Q Consensus 79 ~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~-~~---~~~~~~~~~~ws~~G~ 154 (434)
.-. .. +..+..-..+.||......+ -+ .......||++.+ ..++.+ ++ ..........|||+.+
T Consensus 1176 s~~-~~--~Hsf~ed~~vkFsn~~q~r~----~g--t~~d~a~~YDvqT---~~~l~tylt~~~~~~y~~n~a~FsP~D~ 1243 (1516)
T KOG1832|consen 1176 STG-GP--RHSFDEDKAVKFSNSLQFRA----LG--TEADDALLYDVQT---CSPLQTYLTDTVTSSYSNNLAHFSPCDT 1243 (1516)
T ss_pred ccc-Cc--cccccccceeehhhhHHHHH----hc--ccccceEEEeccc---CcHHHHhcCcchhhhhhccccccCCCcc
Confidence 621 11 22233334455554311111 01 1124567899887 333322 11 1112234677899887
Q ss_pred eEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-ceeEE
Q 013871 155 GLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILE 233 (434)
Q Consensus 155 ~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~-~~~~~ 233 (434)
.|+ .. | -||.+... +.+-.+++-.--..-.|+|.|.++++ ...|||+++ ..++.
T Consensus 1244 LIl--nd-----------G--vLWDvR~~---~aIh~FD~ft~~~~G~FHP~g~eVII-------NSEIwD~RTF~lLh~ 1298 (1516)
T KOG1832|consen 1244 LIL--ND-----------G--VLWDVRIP---EAIHRFDQFTDYGGGGFHPSGNEVII-------NSEIWDMRTFKLLHS 1298 (1516)
T ss_pred eEe--eC-----------c--eeeeeccH---HHHhhhhhheecccccccCCCceEEe-------echhhhhHHHHHHhc
Confidence 542 11 1 24443221 11111111111112358999999887 346899974 44455
Q ss_pred eCCcCeeEEEECCCCCeEEEEec--CC------------CCCeEEEEEccCCEEEEEeeCC-CceEEEECCCCCEEEEEE
Q 013871 234 LGSGPYNTVRWNPKGKFLCLAGF--GN------------LPGDMAFWDYVDGKQLGTTRAE-CSVTSEWSPDGRYFMTAT 298 (434)
Q Consensus 234 ~~~~~~~~i~~SP~g~~l~~~~~--~~------------~~g~i~iwd~~~~~~i~~~~~~-~~~~~~wspdg~~l~tas 298 (434)
.+.-....+.|+..|..+...-. +. .-...+-+|..++..|.++... ++..++-+|...++.+-.
T Consensus 1299 VP~Ldqc~VtFNstG~VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi~v~R~~~Dlct~~~D~~l~vIe 1378 (1516)
T KOG1832|consen 1299 VPSLDQCAVTFNSTGDVMYAMLNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATIPVDRCLLDLCTEPTDSFLGVIE 1378 (1516)
T ss_pred CccccceEEEeccCccchhhhhhhhhhhhhhcccccccchhhhhccccccccccceeeecccchhhhhcCCccceEEEEe
Confidence 55555567889998886543320 00 0012334555566667777664 555677788878877765
Q ss_pred cCCce---eeCCcEEEEee
Q 013871 299 TAPRL---QIDNGIKIFHH 314 (434)
Q Consensus 299 ~~prl---~~D~~i~iw~~ 314 (434)
.-... +++-..|++.+
T Consensus 1379 ~~~~~d~dq~sT~~r~yEI 1397 (1516)
T KOG1832|consen 1379 MEDQEDMDQFSTSARMYEI 1397 (1516)
T ss_pred ccChhhhhhhhhhhhhhhh
Confidence 42111 12335566655
No 321
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.42 E-value=0.04 Score=50.17 Aligned_cols=196 Identities=13% Similarity=0.152 Sum_probs=100.7
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF 80 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~ 80 (434)
|+.|+|.|+.+.|++... +.+.|...+. +|+.++++..... ...-.+.+..++.|+++.. ++.|.++++...
T Consensus 24 ~SGLTy~pd~~tLfaV~d----~~~~i~els~-~G~vlr~i~l~g~--~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~ 96 (248)
T PF06977_consen 24 LSGLTYNPDTGTLFAVQD----EPGEIYELSL-DGKVLRRIPLDGF--GDYEGITYLGNGRYVLSEERDQRLYIFTIDDD 96 (248)
T ss_dssp EEEEEEETTTTEEEEEET----TTTEEEEEET-T--EEEEEE-SS---SSEEEEEE-STTEEEEEETTTTEEEEEEE---
T ss_pred ccccEEcCCCCeEEEEEC----CCCEEEEEcC-CCCEEEEEeCCCC--CCceeEEEECCCEEEEEEcCCCcEEEEEEecc
Confidence 578999999888888771 3466766675 6888888766543 3445788998998888774 678999888442
Q ss_pred CCc----eeeeee--c-----CCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCcee--------eeeecc
Q 013871 81 PKG----ILYRLR--V-----PGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLA--------RRSFFR 141 (434)
Q Consensus 81 ~~~----~~~~~~--~-----~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~--------~~~~~~ 141 (434)
... ...++. . .++..++|.|.++..+++ +...|. .||.+........+. ....+-
T Consensus 97 ~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~----kE~~P~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (248)
T PF06977_consen 97 TTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVA----KERKPK--RLYEVNGFPGGFDLFVSDDQDLDDDKLFV 170 (248)
T ss_dssp -TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEE----EESSSE--EEEEEESTT-SS--EEEE-HHHH-HT--S
T ss_pred ccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEE----eCCCCh--hhEEEccccCccceeecccccccccccee
Confidence 211 111122 1 257889999985554443 223343 344443210011111 112233
Q ss_pred cceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCC--------CCeEEEEECcCCCEEEEE
Q 013871 142 CSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKE--------GPVHDVQWSYSGSEFAVV 213 (434)
Q Consensus 142 ~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~--------~~i~~v~wspdg~~~av~ 213 (434)
.+...+.++|....++++. +.+. .|..++..|.......|... ..-..|+|.++|+.+++
T Consensus 171 ~d~S~l~~~p~t~~lliLS----~es~-------~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv- 238 (248)
T PF06977_consen 171 RDLSGLSYDPRTGHLLILS----DESR-------LLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV- 238 (248)
T ss_dssp S---EEEEETTTTEEEEEE----TTTT-------EEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-
T ss_pred ccccceEEcCCCCeEEEEE----CCCC-------eEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-
Confidence 4556778888877877762 2222 24444544443444444421 23467999999977664
Q ss_pred EccCCCeEEEE
Q 013871 214 YGFMPASATIF 224 (434)
Q Consensus 214 ~g~~~~~v~l~ 224 (434)
++|+..++|
T Consensus 239 --sEpNlfy~f 247 (248)
T PF06977_consen 239 --SEPNLFYRF 247 (248)
T ss_dssp --ETTTEEEEE
T ss_pred --cCCceEEEe
Confidence 347666655
No 322
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=97.40 E-value=0.0054 Score=54.77 Aligned_cols=115 Identities=7% Similarity=-0.032 Sum_probs=78.9
Q ss_pred ccCCCeEEEEecccceeEE-eC--CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC-E-EEEEeeCC---CceEEE
Q 013871 215 GFMPASATIFNKKCRPILE-LG--SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG-K-QLGTTRAE---CSVTSE 286 (434)
Q Consensus 215 g~~~~~v~l~d~~~~~~~~-~~--~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~-~-~i~~~~~~---~~~~~~ 286 (434)
...|.+++++++....... .| .-..+++.+|||++++++.|..+ .|.+|.+.+. + .+.+..++ ......
T Consensus 134 ~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~---~Vf~y~id~~sey~~~~~~a~t~D~gF~~S 210 (344)
T KOG4532|consen 134 ASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSR---RVFRYAIDDESEYIENIYEAPTSDHGFYNS 210 (344)
T ss_pred ccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCC---cceEEEeCCccceeeeeEecccCCCceeee
Confidence 3456677777765433222 22 23388999999999999988554 8999887643 3 33333333 334489
Q ss_pred ECCCCCEEEEEEcCCceeeCCcEEEEeec--Cceeeee------ecccceeeEEEcCCCC
Q 013871 287 WSPDGRYFMTATTAPRLQIDNGIKIFHHN--GSLFFKK------MFDKLFQAEWKPVSPD 338 (434)
Q Consensus 287 wspdg~~l~tas~~prl~~D~~i~iw~~~--g~~~~~~------~~~~~~~~~w~p~~~~ 338 (434)
||.....||+++. |+.+.|||+. +.++..+ +...+..+.|.|.++.
T Consensus 211 ~s~~~~~FAv~~Q------dg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~l 264 (344)
T KOG4532|consen 211 FSENDLQFAVVFQ------DGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLL 264 (344)
T ss_pred eccCcceEEEEec------CCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcc
Confidence 9999999999999 9999999984 4444332 3346888889886654
No 323
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.38 E-value=0.0002 Score=73.11 Aligned_cols=202 Identities=14% Similarity=0.225 Sum_probs=132.6
Q ss_pred cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCc
Q 013871 90 VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQ 169 (434)
Q Consensus 90 ~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~ 169 (434)
....++++||-+ ..++++ +...|.|++|++.+ +......+.|...++.+.=+.+|..++...+...
T Consensus 1101 ~~~fTc~afs~~-~~hL~v-----G~~~Geik~~nv~s---G~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~----- 1166 (1516)
T KOG1832|consen 1101 TALFTCIAFSGG-TNHLAV-----GSHAGEIKIFNVSS---GSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSS----- 1166 (1516)
T ss_pred ccceeeEEeecC-CceEEe-----eeccceEEEEEccC---ccccccccccccccccccccCCcceeeeeccccC-----
Confidence 456788889887 555554 34567899999988 7888888889888888888899998765432211
Q ss_pred eeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-cceeEEe------CCcCeeEE
Q 013871 170 SYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL------GSGPYNTV 242 (434)
Q Consensus 170 ~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~-~~~~~~~------~~~~~~~i 242 (434)
.-..||.+...++. +-. -..-+.+.|+.. .++.++ |..-..+.+||+. +.++.++ ..-..|+.
T Consensus 1167 ---PlsaLW~~~s~~~~--~Hs---f~ed~~vkFsn~-~q~r~~-gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a 1236 (1516)
T KOG1832|consen 1167 ---PLSALWDASSTGGP--RHS---FDEDKAVKFSNS-LQFRAL-GTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLA 1236 (1516)
T ss_pred ---chHHHhccccccCc--ccc---ccccceeehhhh-HHHHHh-cccccceEEEecccCcHHHHhcCcchhhhhhcccc
Confidence 01124444322211 111 224457888865 455554 4444589999996 4444432 12344889
Q ss_pred EECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceE-EEECCCCCEEEEEEcCCcee----------eCCcEEE
Q 013871 243 RWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVT-SEWSPDGRYFMTATTAPRLQ----------IDNGIKI 311 (434)
Q Consensus 243 ~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~-~~wspdg~~l~tas~~prl~----------~D~~i~i 311 (434)
.|||+..+++- +| .+||++..+.|+.|....... =.|+|.|..++.-+.-+.+| .|.+-..
T Consensus 1237 ~FsP~D~LIln------dG--vLWDvR~~~aIh~FD~ft~~~~G~FHP~g~eVIINSEIwD~RTF~lLh~VP~Ldqc~Vt 1308 (1516)
T KOG1832|consen 1237 HFSPCDTLILN------DG--VLWDVRIPEAIHRFDQFTDYGGGGFHPSGNEVIINSEIWDMRTFKLLHSVPSLDQCAVT 1308 (1516)
T ss_pred ccCCCcceEee------Cc--eeeeeccHHHHhhhhhheecccccccCCCceEEeechhhhhHHHHHHhcCccccceEEE
Confidence 99999998873 23 589999887787776543222 57999999999888644332 2666667
Q ss_pred EeecCceeeeee
Q 013871 312 FHHNGSLFFKKM 323 (434)
Q Consensus 312 w~~~g~~~~~~~ 323 (434)
|+-+|..+|...
T Consensus 1309 FNstG~VmYa~~ 1320 (1516)
T KOG1832|consen 1309 FNSTGDVMYAML 1320 (1516)
T ss_pred eccCccchhhhh
Confidence 777887776543
No 324
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.35 E-value=0.076 Score=50.05 Aligned_cols=119 Identities=15% Similarity=0.202 Sum_probs=73.1
Q ss_pred eEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc--------ceeEEe--CCcCeeEEEEC
Q 013871 176 KLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC--------RPILEL--GSGPYNTVRWN 245 (434)
Q Consensus 176 ~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~--------~~~~~~--~~~~~~~i~~S 245 (434)
.||.++..+. ...+....-..-+.++||||++.|.++ -...+.+..|++.. .....+ +.+.--.++.-
T Consensus 144 ~lyr~~p~g~-~~~l~~~~~~~~NGla~SpDg~tly~a-DT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vD 221 (307)
T COG3386 144 SLYRVDPDGG-VVRLLDDDLTIPNGLAFSPDGKTLYVA-DTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVD 221 (307)
T ss_pred eEEEEcCCCC-EEEeecCcEEecCceEECCCCCEEEEE-eCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEe
Confidence 5888875443 222222112233689999999988874 55567888886641 111111 23444456667
Q ss_pred CCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEE-CCCCCEEEEEEc
Q 013871 246 PKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEW-SPDGRYFMTATT 299 (434)
Q Consensus 246 P~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~w-spdg~~l~tas~ 299 (434)
-+|.+.+.+..+. +.|.+|+.+ ++++..+.-+ .++.++| .|+.+.|...+.
T Consensus 222 adG~lw~~a~~~g--~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 222 ADGNLWVAAVWGG--GRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred CCCCEEEecccCC--ceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEEec
Confidence 7788775444221 389999998 8888877665 5555666 567777766665
No 325
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.31 E-value=0.076 Score=54.94 Aligned_cols=227 Identities=10% Similarity=0.025 Sum_probs=116.6
Q ss_pred eeecCCCcEEEEec-CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCC-
Q 013871 55 IRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQ- 132 (434)
Q Consensus 55 ~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~- 132 (434)
-.|++.+..+|.+. +|.|.+++-.- ......+.....+..+-+.-+....++....+..+.|..++||++.....+.
T Consensus 29 sc~~s~~~~vvigt~~G~V~~Ln~s~-~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 29 SCCSSSTGSVVIGTADGRVVILNSSF-QLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred eEEcCCCceEEEeeccccEEEecccc-eeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence 36888888888774 57777776432 1101122222233333344432234443333334466789999987542222
Q ss_pred ceee--eeec-------ccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeee--ecCCCCCeEEE
Q 013871 133 PLAR--RSFF-------RCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLV--PLRKEGPVHDV 201 (434)
Q Consensus 133 ~i~~--~~~~-------~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v--~l~~~~~i~~v 201 (434)
|.+. ...+ ......+.-+.+-+.+++.- .+...- ++.=++.+....++ ....+++|+.+
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf---~nG~V~-------~~~GDi~RDrgsr~~~~~~~~~pITgL 177 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGF---TNGLVI-------CYKGDILRDRGSRQDYSHRGKEPITGL 177 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEe---cCcEEE-------EEcCcchhccccceeeeccCCCCceee
Confidence 3332 1111 11223344444433332221 111111 11112222222222 23347899999
Q ss_pred EECcCCCEEEEEEccCCCeEEEEecccce-e---EEeCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEe
Q 013871 202 QWSYSGSEFAVVYGFMPASATIFNKKCRP-I---LELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTT 277 (434)
Q Consensus 202 ~wspdg~~~av~~g~~~~~v~l~d~~~~~-~---~~~~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~ 277 (434)
++.-+++..+++.. ...|.+|.++++. . .+-+..+.||..+++-...+++++. .-++|||......-..+
T Consensus 178 ~~~~d~~s~lFv~T--t~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~----e~l~fY~sd~~~~cfaf 251 (933)
T KOG2114|consen 178 ALRSDGKSVLFVAT--TEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGS----EFLYFYDSDGRGPCFAF 251 (933)
T ss_pred EEecCCceeEEEEe--cceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecC----ceEEEEcCCCcceeeee
Confidence 99999987332222 3489999887554 2 2336778899999886663444442 26999998866555555
Q ss_pred eCCCceEEEECCCCCEEEEEE
Q 013871 278 RAECSVTSEWSPDGRYFMTAT 298 (434)
Q Consensus 278 ~~~~~~~~~wspdg~~l~tas 298 (434)
.-..--.+-|..-|..|++..
T Consensus 252 ~~g~kk~~~~~~~g~~L~v~~ 272 (933)
T KOG2114|consen 252 EVGEKKEMLVFSFGLLLCVTT 272 (933)
T ss_pred cCCCeEEEEEEecCEEEEEEc
Confidence 522223355555566665544
No 326
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.28 E-value=0.21 Score=48.78 Aligned_cols=95 Identities=12% Similarity=0.154 Sum_probs=59.1
Q ss_pred ccCCCeEEEEecc-cceeEEeCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC-C--CceEEEECCC
Q 013871 215 GFMPASATIFNKK-CRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA-E--CSVTSEWSPD 290 (434)
Q Consensus 215 g~~~~~v~l~d~~-~~~~~~~~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~-~--~~~~~~wspd 290 (434)
+..++.+..||.+ ++.+............ .++..+++++ .+|.|+.+|..+++.+..... . ...... ..
T Consensus 247 ~~~~g~l~a~d~~tG~~~W~~~~~~~~~p~--~~~~~vyv~~---~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~--i~ 319 (377)
T TIGR03300 247 VSYQGRVAALDLRSGRVLWKRDASSYQGPA--VDDNRLYVTD---ADGVVVALDRRSGSELWKNDELKYRQLTAPA--VV 319 (377)
T ss_pred EEcCCEEEEEECCCCcEEEeeccCCccCce--EeCCEEEEEC---CCCeEEEEECCCCcEEEccccccCCccccCE--EE
Confidence 3446789999985 3444433222222222 2456666665 568999999999987765532 1 111111 24
Q ss_pred CCEEEEEEcCCceeeCCcEEEEee-cCceeeee
Q 013871 291 GRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKK 322 (434)
Q Consensus 291 g~~l~tas~~prl~~D~~i~iw~~-~g~~~~~~ 322 (434)
|.+|++++. |+.+.++|. +|+++.+.
T Consensus 320 g~~l~~~~~------~G~l~~~d~~tG~~~~~~ 346 (377)
T TIGR03300 320 GGYLVVGDF------EGYLHWLSREDGSFVARL 346 (377)
T ss_pred CCEEEEEeC------CCEEEEEECCCCCEEEEE
Confidence 678888888 999999998 47766543
No 327
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.28 E-value=0.17 Score=49.39 Aligned_cols=92 Identities=11% Similarity=0.167 Sum_probs=56.2
Q ss_pred CCCEEEEEEccCCCeEEEEecc-cceeEEe---CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCC
Q 013871 206 SGSEFAVVYGFMPASATIFNKK-CRPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAEC 281 (434)
Q Consensus 206 dg~~~av~~g~~~~~v~l~d~~-~~~~~~~---~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~ 281 (434)
++..+++ +..++.+..+|.. ++.+... .......... .|..|++++ .+|.|+++|..+++.+..+..+.
T Consensus 278 ~~~~vyv--~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~---~~G~l~~~d~~tG~~~~~~~~~~ 350 (377)
T TIGR03300 278 DDNRLYV--TDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGD---FEGYLHWLSREDGSFVARLKTDG 350 (377)
T ss_pred eCCEEEE--ECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEe---CCCEEEEEECCCCCEEEEEEcCC
Confidence 3455554 4467899999985 4444333 1111222222 466777776 56899999999999998887543
Q ss_pred c--eE-EEECCCCCEEEEEEcCCceeeCCcEEEE
Q 013871 282 S--VT-SEWSPDGRYFMTATTAPRLQIDNGIKIF 312 (434)
Q Consensus 282 ~--~~-~~wspdg~~l~tas~~prl~~D~~i~iw 312 (434)
. .. .... + ..|+.++. |+.|..|
T Consensus 351 ~~~~~sp~~~-~-~~l~v~~~------dG~l~~~ 376 (377)
T TIGR03300 351 SGIASPPVVV-G-DGLLVQTR------DGDLYAF 376 (377)
T ss_pred CccccCCEEE-C-CEEEEEeC------CceEEEe
Confidence 1 11 2222 2 35777777 8877765
No 328
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.13 E-value=0.0084 Score=54.17 Aligned_cols=128 Identities=19% Similarity=0.331 Sum_probs=85.3
Q ss_pred CCCeEEEEECcCCCEEEEEEccCCC-eEEEEecccce-eEEeC----CcCeeEEEECCCCCeEEEE--ecCCCCCeEEEE
Q 013871 195 EGPVHDVQWSYSGSEFAVVYGFMPA-SATIFNKKCRP-ILELG----SGPYNTVRWNPKGKFLCLA--GFGNLPGDMAFW 266 (434)
Q Consensus 195 ~~~i~~v~wspdg~~~av~~g~~~~-~v~l~d~~~~~-~~~~~----~~~~~~i~~SP~g~~l~~~--~~~~~~g~i~iw 266 (434)
....|+++++|....-++ ....|+ -..+||..+.. ...+. ....-.=.|||||++|... ++++..|.|=||
T Consensus 67 paR~Hgi~~~p~~~rava-fARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvY 145 (366)
T COG3490 67 PARGHGIAFHPALPRAVA-FARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVY 145 (366)
T ss_pred ccccCCeecCCCCcceEE-EEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEE
Confidence 457789999997765444 356677 45778886432 22221 1111234699999998875 455678999999
Q ss_pred EccCC-EEEEEeeCC--CceEEEECCCCCEEEEEEc----CC---c--ee---eCCcEEEEe-ecCceeeeee
Q 013871 267 DYVDG-KQLGTTRAE--CSVTSEWSPDGRYFMTATT----AP---R--LQ---IDNGIKIFH-HNGSLFFKKM 323 (434)
Q Consensus 267 d~~~~-~~i~~~~~~--~~~~~~wspdg~~l~tas~----~p---r--l~---~D~~i~iw~-~~g~~~~~~~ 323 (434)
|...+ ..+..+..+ ..-.+.|.+||+.++.+.. -| | |+ |.-++.+-+ .+|.++.+..
T Consensus 146 d~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~ 218 (366)
T COG3490 146 DAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHT 218 (366)
T ss_pred ecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhcc
Confidence 98755 677777776 4445999999999998753 11 1 22 334667777 6888776653
No 329
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.03 E-value=0.015 Score=53.03 Aligned_cols=234 Identities=11% Similarity=0.137 Sum_probs=121.9
Q ss_pred CCCCeeeecCCCcEEEEec-CCeEEEEeCCCCC-Cce-------ee--------eee-cCCeeEEEEeCCCCC-eEEEEe
Q 013871 50 TTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFP-KGI-------LY--------RLR-VPGVAAFEVSKAPGS-HVAVFV 110 (434)
Q Consensus 50 ~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~-~~~-------~~--------~~~-~~~v~~~~~sp~~~~-~ia~~~ 110 (434)
+.++++.|..-|.|++++. +|.|.+|.-.... ... .. .+. .+.|..+.|-.+.+. ...+
T Consensus 27 d~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl-- 104 (460)
T COG5170 27 DKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL-- 104 (460)
T ss_pred ceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE--
Confidence 5667889999999999995 5799988854321 100 00 111 125667777665332 2222
Q ss_pred cCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeee
Q 013871 111 PESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLV 190 (434)
Q Consensus 111 ~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v 190 (434)
.+.+.+|++|.+-... -+.+++-.... .+. +|.|-.+ +++..-...+. .+.. .++ -...+++
T Consensus 105 ---stNdktiKlWKiyekn-lk~va~nnls~----~~~-~~~~g~~---~s~~~l~lprl--s~hd-~ii---aa~p~rv 166 (460)
T COG5170 105 ---STNDKTIKLWKIYEKN-LKVVAENNLSD----SFH-SPMGGPL---TSTKELLLPRL--SEHD-EII---AAKPCRV 166 (460)
T ss_pred ---ecCCceeeeeeeeccc-chhhhcccccc----ccc-cccCCCc---CCHHHhhcccc--cccc-eEE---Eecccee
Confidence 1445689999986521 12222111110 111 1222111 00000000000 0000 000 0112222
Q ss_pred e-cCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc----cceeEEe--C-----CcCeeEEEECCCCCeEEEEecCC
Q 013871 191 P-LRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK----CRPILEL--G-----SGPYNTVRWNPKGKFLCLAGFGN 258 (434)
Q Consensus 191 ~-l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~----~~~~~~~--~-----~~~~~~i~~SP~g~~l~~~~~~~ 258 (434)
- -.+...|+++.+..|...|. ...+=+|.+|++. +--+.++ + ..-+++..|+|.-..+..-+.
T Consensus 167 yaNaH~yhiNSiS~NsD~et~l---SaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSs-- 241 (460)
T COG5170 167 YANAHPYHINSISFNSDKETLL---SADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSS-- 241 (460)
T ss_pred ccccceeEeeeeeecCchheee---eccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEec--
Confidence 1 11345678899987766666 3345689999875 1223333 1 234678889997764443322
Q ss_pred CCCeEEEEEccCCE------EE-E-EeeC----------CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec
Q 013871 259 LPGDMAFWDYVDGK------QL-G-TTRA----------ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN 315 (434)
Q Consensus 259 ~~g~i~iwd~~~~~------~i-~-~~~~----------~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~ 315 (434)
..|+|.+-|++... .+ . ...+ ..++.+.||+.||||++-.. .+++|||+.
T Consensus 242 SkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-------ltvkiwDvn 309 (460)
T COG5170 242 SKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-------LTVKIWDVN 309 (460)
T ss_pred CCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-------ceEEEEecc
Confidence 45899999987321 11 0 0010 14456999999999998764 799999984
No 330
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.92 E-value=0.0051 Score=61.13 Aligned_cols=88 Identities=15% Similarity=0.243 Sum_probs=67.4
Q ss_pred CCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeEEe--CCcCee-EEEECCCCCeEEEEecCCCCCeEEEEEccCCE
Q 013871 196 GPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL--GSGPYN-TVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK 272 (434)
Q Consensus 196 ~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~~--~~~~~~-~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~ 272 (434)
..|.-+.|+|.-..+|. +...+.+.++-+....+.++ +...+. +++|.|||++|++|= .+|+|.+.|++++.
T Consensus 21 ~~i~~~ewnP~~dLiA~--~t~~gelli~R~n~qRlwtip~p~~~v~~sL~W~~DGkllaVg~---kdG~I~L~Dve~~~ 95 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIAT--RTEKGELLIHRLNWQRLWTIPIPGENVTASLCWRPDGKLLAVGF---KDGTIRLHDVEKGG 95 (665)
T ss_pred cceEEEEEcCccchhhe--eccCCcEEEEEeccceeEeccCCCCccceeeeecCCCCEEEEEe---cCCeEEEEEccCCC
Confidence 46788999999888884 56678888887776666666 455555 999999999999886 56999999999987
Q ss_pred EEEEeeC---CCceEEEEC
Q 013871 273 QLGTTRA---ECSVTSEWS 288 (434)
Q Consensus 273 ~i~~~~~---~~~~~~~ws 288 (434)
.+..... ..++..-|+
T Consensus 96 ~l~~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 96 RLVSFLFSVETDISKGIWD 114 (665)
T ss_pred ceeccccccccchheeecc
Confidence 7766322 144456666
No 331
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.85 E-value=0.37 Score=44.20 Aligned_cols=148 Identities=12% Similarity=0.125 Sum_probs=93.3
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF 80 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~ 80 (434)
|++|.|+|+.+.|.+.. ..+.-.||-..+|+.+++.+.... ..--.+.|..+++|+++-. +.++.++.+...
T Consensus 88 vS~LTynp~~rtLFav~-----n~p~~iVElt~~GdlirtiPL~g~--~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 88 VSSLTYNPDTRTLFAVT-----NKPAAIVELTKEGDLIRTIPLTGF--SDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred ccceeeCCCcceEEEec-----CCCceEEEEecCCceEEEeccccc--CChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 67899999999999888 667778887789999998876543 2223678999999988763 567877776543
Q ss_pred CCc---eeeeee-------cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCC-----CCCceeeeeeccccee
Q 013871 81 PKG---ILYRLR-------VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDL-----QSQPLARRSFFRCSTV 145 (434)
Q Consensus 81 ~~~---~~~~~~-------~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~-----~~~~i~~~~~~~~~~~ 145 (434)
... ...++. -.+...++|+|.. ..+-++ . ...|-.|..++-.... ...+-..+.++-.++.
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~-~~l~~a-K--Er~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvS 236 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVD-HRLFVA-K--ERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVS 236 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCC-ceEEEE-E--ccCCcEEEEEecCCcccccccccCcccccceEeeccc
Confidence 211 011222 2357788999984 333222 1 2233344433321100 0223334456666778
Q ss_pred EEEECCCCCeEEEEE
Q 013871 146 QLNWNRGSTGLLAVA 160 (434)
Q Consensus 146 ~~~ws~~G~~l~~~~ 160 (434)
.+.+++....|+++.
T Consensus 237 gl~~~~~~~~LLVLS 251 (316)
T COG3204 237 GLEFNAITNSLLVLS 251 (316)
T ss_pred cceecCCCCcEEEEe
Confidence 888998888888774
No 332
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=96.82 E-value=0.016 Score=58.60 Aligned_cols=270 Identities=14% Similarity=0.139 Sum_probs=142.6
Q ss_pred CCCeeeecCCCcEEEEecCCeEEEEeCCCCCCceeeeee--cCCeeEEEEeCCCCC-eEEEEecCCCCCCceEEEEEcCC
Q 013871 51 TWPSIRFSSDEAVACRMATNEIQFFDTTDFPKGILYRLR--VPGVAAFEVSKAPGS-HVAVFVPESKGSPASVQIYACGK 127 (434)
Q Consensus 51 ~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~~~~~~~~--~~~v~~~~~sp~~~~-~ia~~~~~~~~~~~~v~i~~~~~ 127 (434)
.+..+..+|.|+-+|.++.-.+.+-|+.+.-.....-.| .-.|.+..|||.... +-++- .. +..-.+|++..
T Consensus 26 ~~~a~si~p~grdi~lAsr~gl~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVs---ts--~qkaiiwnlA~ 100 (1081)
T KOG0309|consen 26 GFNAVSINPSGRDIVLASRQGLYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVS---TS--NQKAIIWNLAK 100 (1081)
T ss_pred cccceeeccccchhhhhhhcCeEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEe---cC--cchhhhhhhhc
Confidence 344677888888888777666777777664332222222 335788889987532 22221 11 12235677654
Q ss_pred CCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeee-ecCCCCCeEEEEECcC
Q 013871 128 DLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLV-PLRKEGPVHDVQWSYS 206 (434)
Q Consensus 128 ~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v-~l~~~~~i~~v~wspd 206 (434)
.+.......+..|...++.+.|++...-++..++. |.. ++.+++..-+.... .-........|.|+-.
T Consensus 101 ss~~aIef~lhghsraitd~n~~~q~pdVlatcsv--dt~---------vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk 169 (1081)
T KOG0309|consen 101 SSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSV--DTY---------VHAWDMRSPHRPFYSTSSWRSAASQVKWNYK 169 (1081)
T ss_pred CCccceEEEEecCccceeccccCCCCCcceeeccc--ccc---------ceeeeccCCCcceeeeecccccCceeeeccc
Confidence 33244445566677788899999988776554433 222 22332222211111 1111334457888864
Q ss_pred -CCEEEEEEccCCCeEEEEecc--cceeEEe--CCcCeeEEEECCCCC-eEEEEecCCCCCeEEEEEccCCEEE--EEe-
Q 013871 207 -GSEFAVVYGFMPASATIFNKK--CRPILEL--GSGPYNTVRWNPKGK-FLCLAGFGNLPGDMAFWDYVDGKQL--GTT- 277 (434)
Q Consensus 207 -g~~~av~~g~~~~~v~l~d~~--~~~~~~~--~~~~~~~i~~SP~g~-~l~~~~~~~~~g~i~iwd~~~~~~i--~~~- 277 (434)
+..+| ......+.+||++ +.++..+ +...+|.+.|+..-. .+...+ ++|+|.+||.++...- .+.
T Consensus 170 ~p~vla---sshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~---~d~tvkfw~y~kSt~e~~~~vt 243 (1081)
T KOG0309|consen 170 DPNVLA---SSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSS---NDGTVKFWDYSKSTTESKRTVT 243 (1081)
T ss_pred Ccchhh---hccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccC---CCCceeeecccccccccceecc
Confidence 44444 3445589999996 3445544 566677777765432 333344 6789999998754211 111
Q ss_pred eCCCceEEEECCCCCE--EEEEE---cCCceeeCCcEEEEeecCc--ee--eeeecccceeeEEEcCCCCCCCC
Q 013871 278 RAECSVTSEWSPDGRY--FMTAT---TAPRLQIDNGIKIFHHNGS--LF--FKKMFDKLFQAEWKPVSPDKFGD 342 (434)
Q Consensus 278 ~~~~~~~~~wspdg~~--l~tas---~~prl~~D~~i~iw~~~g~--~~--~~~~~~~~~~~~w~p~~~~~~~~ 342 (434)
....+..-.+-|=|+- ++-.. ..|-++.+|.-..|++-.. .+ +..+.+.+.+..||.+....+-.
T Consensus 244 t~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~ 317 (1081)
T KOG0309|consen 244 TNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDY 317 (1081)
T ss_pred ccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCC
Confidence 1112223344443332 22211 1233333555555554221 22 23356677777788777654443
No 333
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.75 E-value=0.021 Score=58.44 Aligned_cols=122 Identities=13% Similarity=0.156 Sum_probs=79.8
Q ss_pred CcCCCEEEEEEccCCCeEEEEecc-cceeEEe-CCcCeeEEEECCC-----CCeEEEEecCCCCCeEEEEEcc---CCEE
Q 013871 204 SYSGSEFAVVYGFMPASATIFNKK-CRPILEL-GSGPYNTVRWNPK-----GKFLCLAGFGNLPGDMAFWDYV---DGKQ 273 (434)
Q Consensus 204 spdg~~~av~~g~~~~~v~l~d~~-~~~~~~~-~~~~~~~i~~SP~-----g~~l~~~~~~~~~g~i~iwd~~---~~~~ 273 (434)
.-+|.+++ ++++||++.|..+- .....++ -..++++|+++|| .+.+++|| ..| +.++..+ +...
T Consensus 80 ~~~Gey~a--sCS~DGkv~I~sl~~~~~~~~~df~rpiksial~Pd~~~~~sk~fv~GG---~ag-lvL~er~wlgnk~~ 153 (846)
T KOG2066|consen 80 ILEGEYVA--SCSDDGKVVIGSLFTDDEITQYDFKRPIKSIALHPDFSRQQSKQFVSGG---MAG-LVLSERNWLGNKDS 153 (846)
T ss_pred ccCCceEE--EecCCCcEEEeeccCCccceeEecCCcceeEEeccchhhhhhhheeecC---cce-EEEehhhhhcCccc
Confidence 44789999 68899999988663 3333333 2678999999998 56777787 667 7777644 2333
Q ss_pred EEEeeC-CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc-eeeeeec------cc--ceeeEEEcCCCCCC
Q 013871 274 LGTTRA-ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS-LFFKKMF------DK--LFQAEWKPVSPDKF 340 (434)
Q Consensus 274 i~~~~~-~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~-~~~~~~~------~~--~~~~~w~p~~~~~~ 340 (434)
+..... ..+..+.|. |.+||.+. |-+|+|+|...+ .+-..++ ++ .+.+.|++....++
T Consensus 154 v~l~~~eG~I~~i~W~--g~lIAWan-------d~Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVI 221 (846)
T KOG2066|consen 154 VVLSEGEGPIHSIKWR--GNLIAWAN-------DDGVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVI 221 (846)
T ss_pred eeeecCccceEEEEec--CcEEEEec-------CCCcEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEE
Confidence 322222 255568885 66888887 789999998543 3333222 12 45788888765443
No 334
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.74 E-value=0.2 Score=45.99 Aligned_cols=156 Identities=17% Similarity=0.264 Sum_probs=90.6
Q ss_pred ceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEE
Q 013871 143 STVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASAT 222 (434)
Q Consensus 143 ~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~ 222 (434)
......++++|+.++++... + +...|+.....+... ..+ ....+....|+++|...++..+ +....
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~--~-------~~~~L~~~~~~~~~~--~~~-~g~~l~~PS~d~~g~~W~v~~~--~~~~~ 90 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEG--D-------GGRSLYVGPAGGPVR--PVL-TGGSLTRPSWDPDGWVWTVDDG--SGGVR 90 (253)
T ss_pred cccceEECCCCCeEEEEEEc--C-------CCCEEEEEcCCCcce--eec-cCCccccccccCCCCEEEEEcC--CCceE
Confidence 45678899999988876511 1 223466655433321 111 2347788999999877775433 33333
Q ss_pred EE-e-ccc--cee-EEeC-C-cCeeEEEECCCCCeEEEEecCCCCCeEEEEEcc---CC--EEE----EEe--eCCCceE
Q 013871 223 IF-N-KKC--RPI-LELG-S-GPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV---DG--KQL----GTT--RAECSVT 284 (434)
Q Consensus 223 l~-d-~~~--~~~-~~~~-~-~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~---~~--~~i----~~~--~~~~~~~ 284 (434)
++ + ... ..+ .... . +.|..+.+||||..+++...+...+.|++--+. ++ ..+ ... ....++.
T Consensus 91 ~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~ 170 (253)
T PF10647_consen 91 VVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTD 170 (253)
T ss_pred EEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCccee
Confidence 33 2 222 111 1121 2 289999999999988887654445788886543 22 111 111 1235667
Q ss_pred EEECCCCCEEEEEEcCCceeeCCcEEE-EeecCc
Q 013871 285 SEWSPDGRYFMTATTAPRLQIDNGIKI-FHHNGS 317 (434)
Q Consensus 285 ~~wspdg~~l~tas~~prl~~D~~i~i-w~~~g~ 317 (434)
++|.+++..++.+... +..+.. ....|.
T Consensus 171 v~W~~~~~L~V~~~~~-----~~~~~~~v~~dG~ 199 (253)
T PF10647_consen 171 VAWSDDSTLVVLGRSA-----GGPVVRLVSVDGG 199 (253)
T ss_pred eeecCCCEEEEEeCCC-----CCceeEEEEccCC
Confidence 9999999987777653 443433 445554
No 335
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.70 E-value=0.72 Score=45.61 Aligned_cols=36 Identities=19% Similarity=0.367 Sum_probs=26.9
Q ss_pred eEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEE
Q 013871 119 SVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLA 158 (434)
Q Consensus 119 ~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~ 158 (434)
.|+||+.. +..+.+..+-....+.|.|+.+...+++
T Consensus 62 ~I~iys~s----G~ll~~i~w~~~~iv~~~wt~~e~LvvV 97 (410)
T PF04841_consen 62 SIQIYSSS----GKLLSSIPWDSGRIVGMGWTDDEELVVV 97 (410)
T ss_pred EEEEECCC----CCEeEEEEECCCCEEEEEECCCCeEEEE
Confidence 58888875 5677777777788899999987555444
No 336
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.70 E-value=0.068 Score=53.25 Aligned_cols=149 Identities=15% Similarity=0.215 Sum_probs=86.0
Q ss_pred CeeeecCCCcEEEEe---cCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCC----CeEEEEecCCCCCCceEEEEEc
Q 013871 53 PSIRFSSDEAVACRM---ATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPG----SHVAVFVPESKGSPASVQIYAC 125 (434)
Q Consensus 53 ~~~~~S~d~~~la~~---~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~----~~ia~~~~~~~~~~~~v~i~~~ 125 (434)
..++|+...+.+.+. .++++++=|. ..-..++.|..+.|+|-.. .++|+ .....|.+|.+
T Consensus 23 hGlaWTDGkqVvLT~L~l~~gE~kfGds-------~viGqFEhV~GlsW~P~~~~~~paLLAV------QHkkhVtVWqL 89 (671)
T PF15390_consen 23 HGLAWTDGKQVVLTDLQLHNGEPKFGDS-------KVIGQFEHVHGLSWAPPCTADTPALLAV------QHKKHVTVWQL 89 (671)
T ss_pred cceEecCCCEEEEEeeeeeCCccccCCc-------cEeeccceeeeeeecCcccCCCCceEEE------eccceEEEEEe
Confidence 368898444444443 3455554221 1234567799999999632 24454 22347889998
Q ss_pred CCCC--CCCceeeeee-----cccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCe
Q 013871 126 GKDL--QSQPLARRSF-----FRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPV 198 (434)
Q Consensus 126 ~~~~--~~~~i~~~~~-----~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i 198 (434)
--.. .++.+...+- +..-.-...|+|...-|++++..|+. -++.+..++. ...+.+...|.|
T Consensus 90 ~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvS----------V~~sV~~d~s-rVkaDi~~~G~I 158 (671)
T PF15390_consen 90 CPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVS----------VLPSVHCDSS-RVKADIKTSGLI 158 (671)
T ss_pred ccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCcee----------EeeeeeeCCc-eEEEeccCCceE
Confidence 5210 0122211111 11111134699999888888765431 1333433333 344455668999
Q ss_pred EEEEECcCCCEEEEEEccCCCeEEEEec
Q 013871 199 HDVQWSYSGSEFAVVYGFMPASATIFNK 226 (434)
Q Consensus 199 ~~v~wspdg~~~av~~g~~~~~v~l~d~ 226 (434)
|+.+|.+||.+++|..|+. =..++||-
T Consensus 159 hCACWT~DG~RLVVAvGSs-LHSyiWd~ 185 (671)
T PF15390_consen 159 HCACWTKDGQRLVVAVGSS-LHSYIWDS 185 (671)
T ss_pred EEEEecCcCCEEEEEeCCe-EEEEEecC
Confidence 9999999999999987762 25567775
No 337
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.66 E-value=0.74 Score=45.06 Aligned_cols=283 Identities=13% Similarity=0.146 Sum_probs=161.9
Q ss_pred cEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec--CCeEEEEeCCCCCCceeeeeecC--CeeEEEEeCCC
Q 013871 27 NVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA--TNEIQFFDTTDFPKGILYRLRVP--GVAAFEVSKAP 102 (434)
Q Consensus 27 ~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~--~~~i~v~~~~~~~~~~~~~~~~~--~v~~~~~sp~~ 102 (434)
++.+++..+......+... ..+..+...+++..+.... .+.+.+.+.. ... ........ .-..+.+++.+
T Consensus 12 ~~~v~~~~~~~~~~~~~~~----~~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~-~n~-~~~~~~~g~~~p~~i~v~~~~ 85 (381)
T COG3391 12 DVSVINTGTNKVTAAISLG----RGPGGVAVNPDGTQVYVANSGSNDVSVIDAT-SNT-VTQSLSVGGVYPAGVAVNPAG 85 (381)
T ss_pred ceEEEeecccEEEEEeecC----CCCceeEEcCccCEEEEEeecCceeeecccc-cce-eeeeccCCCccccceeeCCCC
Confidence 3777777666655555443 2444678888885554442 3344444433 211 11111111 12345556553
Q ss_pred CCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEee
Q 013871 103 GSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTT 182 (434)
Q Consensus 103 ~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~ 182 (434)
...... . .....|.+.+... ...+....... .-..+.++++|+.+.+.-... +...+..++.
T Consensus 86 ~~vyv~-~----~~~~~v~vid~~~---~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~---------~~~~vsvid~ 147 (381)
T COG3391 86 NKVYVT-T----GDSNTVSVIDTAT---NTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGN---------GNNTVSVIDA 147 (381)
T ss_pred CeEEEe-c----CCCCeEEEEcCcc---cceeeEeeecc-CCceEEECCCCCEEEEEeccc---------CCceEEEEeC
Confidence 322221 1 1245677777554 33333333222 556889999999887642211 2223455554
Q ss_pred CCcceee-eecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeEE------eCC-cCeeEEEECCCCCeEEEE
Q 013871 183 DGTHEGL-VPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILE------LGS-GPYNTVRWNPKGKFLCLA 254 (434)
Q Consensus 183 ~~~~~~~-v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~------~~~-~~~~~i~~SP~g~~l~~~ 254 (434)
....... ++.. ..| ..++++|+|..+.+.. ..++.+.++|.....+.. ... ..-..+.++|+|.++.+.
T Consensus 148 ~t~~~~~~~~vG-~~P-~~~a~~p~g~~vyv~~-~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~ 224 (381)
T COG3391 148 ATNKVTATIPVG-NTP-TGVAVDPDGNKVYVTN-SDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVA 224 (381)
T ss_pred CCCeEEEEEecC-CCc-ceEEECCCCCeEEEEe-cCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEE
Confidence 4332221 2222 245 8999999999888754 557799999988766653 211 122568999999988887
Q ss_pred ecCCCCCeEEEEEccCCEEEEE-ee-CC-CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceeeee--ec----c
Q 013871 255 GFGNLPGDMAFWDYVDGKQLGT-TR-AE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKK--MF----D 325 (434)
Q Consensus 255 ~~~~~~g~i~iwd~~~~~~i~~-~~-~~-~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~~~~~--~~----~ 325 (434)
...+.++.+...|..++..... .. .. ....+..+|+|.++.++... .+.+.+-|.....+... .. .
T Consensus 225 ~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~-----~~~V~vid~~~~~v~~~~~~~~~~~~ 299 (381)
T COG3391 225 NDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQ-----GGTVSVIDGATDRVVKTGPTGNEALG 299 (381)
T ss_pred eccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecC-----CCeEEEEeCCCCceeeeecccccccc
Confidence 6555557899999998876665 22 22 34568999999999998763 47777777654333221 11 1
Q ss_pred cceeeEEEcCCCCCCC
Q 013871 326 KLFQAEWKPVSPDKFG 341 (434)
Q Consensus 326 ~~~~~~w~p~~~~~~~ 341 (434)
..+.+.+.+.......
T Consensus 300 ~~~~~~~~~~~~~~~~ 315 (381)
T COG3391 300 EPVSIAISPLYDTNYV 315 (381)
T ss_pred cceeccceeecccccc
Confidence 2555666665444333
No 338
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.65 E-value=0.55 Score=43.48 Aligned_cols=231 Identities=12% Similarity=0.144 Sum_probs=121.8
Q ss_pred CCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCCCceee---
Q 013871 10 VGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPKGILY--- 86 (434)
Q Consensus 10 ~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~~~~~--- 86 (434)
.|+.|+.+. +++ |.++++............ ..+..+..-++-+.|+...|+.|.+|++.........
T Consensus 6 ~~~~L~vGt-----~~G-l~~~~~~~~~~~~~i~~~----~~I~ql~vl~~~~~llvLsd~~l~~~~L~~l~~~~~~~~~ 75 (275)
T PF00780_consen 6 WGDRLLVGT-----EDG-LYVYDLSDPSKPTRILKL----SSITQLSVLPELNLLLVLSDGQLYVYDLDSLEPVSTSAPL 75 (275)
T ss_pred CCCEEEEEE-----CCC-EEEEEecCCccceeEeec----ceEEEEEEecccCEEEEEcCCccEEEEchhhccccccccc
Confidence 467777766 666 999998433333333222 2355777788888888888999999998775432211
Q ss_pred ----------ee-ecCCeeEEE--EeCCCCCeEEEEecCCCCCCceEEEEEcCCCC-CC-CceeeeeecccceeEEEECC
Q 013871 87 ----------RL-RVPGVAAFE--VSKAPGSHVAVFVPESKGSPASVQIYACGKDL-QS-QPLARRSFFRCSTVQLNWNR 151 (434)
Q Consensus 87 ----------~~-~~~~v~~~~--~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~-~~-~~i~~~~~~~~~~~~~~ws~ 151 (434)
.+ ...++..++ -...+...+++.... .+.+|...... .. ........ ......+.|.
T Consensus 76 ~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk------~i~i~~~~~~~~~f~~~~ke~~l-p~~~~~i~~~- 147 (275)
T PF00780_consen 76 AFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKK------KILIYEWNDPRNSFSKLLKEISL-PDPPSSIAFL- 147 (275)
T ss_pred cccccccccccccccCCeeEEeeccccccceEEEEEECC------EEEEEEEECCcccccceeEEEEc-CCCcEEEEEe-
Confidence 11 123455555 112223344443322 77777775421 01 22222222 2455677787
Q ss_pred CCCeEEEEEEecccccCceeecceeEEEEeeCCcceeee-ecCC-----------CCCeEEEEECcCCCEEEEEEccCCC
Q 013871 152 GSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLV-PLRK-----------EGPVHDVQWSYSGSEFAVVYGFMPA 219 (434)
Q Consensus 152 ~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v-~l~~-----------~~~i~~v~wspdg~~~av~~g~~~~ 219 (434)
++.+++.... ..+.++........+ .... ..++.-+..+ + ++|.+++ +.
T Consensus 148 -~~~i~v~~~~-------------~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~e~Ll~~---~~ 208 (275)
T PF00780_consen 148 -GNKICVGTSK-------------GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-D-NEFLLCY---DN 208 (275)
T ss_pred -CCEEEEEeCC-------------ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-C-ceEEEEe---cc
Confidence 5666664321 123334332211111 1111 1244444444 3 3566544 23
Q ss_pred eEEEEecccceeE----EeCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceE
Q 013871 220 SATIFNKKCRPIL----ELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVT 284 (434)
Q Consensus 220 ~v~l~d~~~~~~~----~~~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~ 284 (434)
...+.|..+.... .+...+..-....| ||+..+. ..|+||++.+++++..+..+....
T Consensus 209 ~g~fv~~~G~~~r~~~i~W~~~p~~~~~~~p---yli~~~~----~~iEV~~~~~~~lvQ~i~~~~~~~ 270 (275)
T PF00780_consen 209 IGVFVNKNGEPSRKSTIQWSSAPQSVAYSSP---YLIAFSS----NSIEVRSLETGELVQTIPLPNIRL 270 (275)
T ss_pred eEEEEcCCCCcCcccEEEcCCchhEEEEECC---EEEEECC----CEEEEEECcCCcEEEEEECCCEEE
Confidence 4445566654433 33444433333333 6665432 369999999999999888765443
No 339
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=96.64 E-value=0.52 Score=42.97 Aligned_cols=175 Identities=15% Similarity=0.179 Sum_probs=94.8
Q ss_pred ceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEE
Q 013871 143 STVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASAT 222 (434)
Q Consensus 143 ~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~ 222 (434)
+...+.|+|+...|.++ .|... .|+.++..|.-...+++...+....|++.-++ .|++ ....++.+.
T Consensus 23 e~SGLTy~pd~~tLfaV----~d~~~-------~i~els~~G~vlr~i~l~g~~D~EgI~y~g~~-~~vl-~~Er~~~L~ 89 (248)
T PF06977_consen 23 ELSGLTYNPDTGTLFAV----QDEPG-------EIYELSLDGKVLRRIPLDGFGDYEGITYLGNG-RYVL-SEERDQRLY 89 (248)
T ss_dssp -EEEEEEETTTTEEEEE----ETTTT-------EEEEEETT--EEEEEE-SS-SSEEEEEE-STT-EEEE-EETTTTEEE
T ss_pred CccccEEcCCCCeEEEE----ECCCC-------EEEEEcCCCCEEEEEeCCCCCCceeEEEECCC-EEEE-EEcCCCcEE
Confidence 45689999998887665 23332 36777777776777788777788899998655 5555 455678898
Q ss_pred EEecc--c-----cee--EEe-----CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEc--cCCEE-EEEe--------
Q 013871 223 IFNKK--C-----RPI--LEL-----GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDY--VDGKQ-LGTT-------- 277 (434)
Q Consensus 223 l~d~~--~-----~~~--~~~-----~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~--~~~~~-i~~~-------- 277 (434)
++++. + ... .++ +...+..++|+|.++.|+++--. ....|+-++. ..... +...
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~-~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (248)
T PF06977_consen 90 IFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKER-KPKRLYEVNGFPGGFDLFVSDDQDLDDDKL 168 (248)
T ss_dssp EEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEES-SSEEEEEEESTT-SS--EEEE-HHHH-HT-
T ss_pred EEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCC-CChhhEEEccccCccceeeccccccccccc
Confidence 88762 1 111 122 23446789999998877766422 2223444443 11111 1111
Q ss_pred eCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceeeeeecc-----------cceeeEEEcCC
Q 013871 278 RAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKKMFD-----------KLFQAEWKPVS 336 (434)
Q Consensus 278 ~~~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~~~~~~~~-----------~~~~~~w~p~~ 336 (434)
.....+.++++|...+|+.-+.- ...+.+.|.+|+.+...... .--.+++.|++
T Consensus 169 ~~~d~S~l~~~p~t~~lliLS~e-----s~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G 233 (248)
T PF06977_consen 169 FVRDLSGLSYDPRTGHLLILSDE-----SRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDG 233 (248)
T ss_dssp -SS---EEEEETTTTEEEEEETT-----TTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT-
T ss_pred eeccccceEEcCCCCeEEEEECC-----CCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCC
Confidence 11255668999987666666653 67788899888876554332 34456666654
No 340
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.55 E-value=0.62 Score=42.77 Aligned_cols=146 Identities=16% Similarity=0.202 Sum_probs=81.9
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEe-CCC
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFD-TTD 79 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~-~~~ 79 (434)
+.+.+.||||+.++.... ......|.++.. +......... .....+.|++++...+... +...+++. ...
T Consensus 26 ~~s~AvS~dg~~~A~v~~--~~~~~~L~~~~~--~~~~~~~~~g----~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~ 97 (253)
T PF10647_consen 26 VTSPAVSPDGSRVAAVSE--GDGGRSLYVGPA--GGPVRPVLTG----GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSAS 97 (253)
T ss_pred ccceEECCCCCeEEEEEE--cCCCCEEEEEcC--CCcceeeccC----CccccccccCCCCEEEEEcCCCceEEEEecCC
Confidence 457899999998887661 112345666654 3322332211 3455789999988777664 34555553 222
Q ss_pred CCCceeeeeecC----CeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCC------CceeeeeecccceeEEEE
Q 013871 80 FPKGILYRLRVP----GVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQS------QPLARRSFFRCSTVQLNW 149 (434)
Q Consensus 80 ~~~~~~~~~~~~----~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~------~~i~~~~~~~~~~~~~~w 149 (434)
.. .....+... .|.++.+||+ +..+++.+....+ +.|.+-.+.....+ .++............+.|
T Consensus 98 g~-~~~~~v~~~~~~~~I~~l~vSpD-G~RvA~v~~~~~~--~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W 173 (253)
T PF10647_consen 98 GT-GEPVEVDWPGLRGRITALRVSPD-GTRVAVVVEDGGG--GRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAW 173 (253)
T ss_pred Cc-ceeEEecccccCCceEEEEECCC-CcEEEEEEecCCC--CeEEEEEEEeCCCCCcceeccceEecccccCcceeeee
Confidence 21 122222222 6999999999 6777776644322 56666555432112 111112122346678999
Q ss_pred CCCCCeEEEEE
Q 013871 150 NRGSTGLLAVA 160 (434)
Q Consensus 150 s~~G~~l~~~~ 160 (434)
.++++ |++++
T Consensus 174 ~~~~~-L~V~~ 183 (253)
T PF10647_consen 174 SDDST-LVVLG 183 (253)
T ss_pred cCCCE-EEEEe
Confidence 99987 44443
No 341
>PRK10115 protease 2; Provisional
Probab=96.52 E-value=1.4 Score=46.64 Aligned_cols=243 Identities=9% Similarity=-0.019 Sum_probs=112.2
Q ss_pred CeeeecCCCcEEEEecC--C----eEEEEeCCCCCCceeeeeecCCe-eEEEEeCCCCCeEEEEecCCC-CCCceEEEEE
Q 013871 53 PSIRFSSDEAVACRMAT--N----EIQFFDTTDFPKGILYRLRVPGV-AAFEVSKAPGSHVAVFVPESK-GSPASVQIYA 124 (434)
Q Consensus 53 ~~~~~S~d~~~la~~~~--~----~i~v~~~~~~~~~~~~~~~~~~v-~~~~~sp~~~~~ia~~~~~~~-~~~~~v~i~~ 124 (434)
..+.||||+++|+.+.+ | +|++.|+.+... ....+.++ ..++|++++. .+.+...... ..+..|..++
T Consensus 130 ~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~---l~~~i~~~~~~~~w~~D~~-~~~y~~~~~~~~~~~~v~~h~ 205 (686)
T PRK10115 130 GGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNW---YPELLDNVEPSFVWANDSW-TFYYVRKHPVTLLPYQVWRHT 205 (686)
T ss_pred eEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCC---CCccccCcceEEEEeeCCC-EEEEEEecCCCCCCCEEEEEE
Confidence 35689999999999843 1 688888865331 11112222 3589999844 3433322222 3556788888
Q ss_pred cCCCCCCCceeeeeecccce-eEEEECCCCCeEEEEEEecccccCceeecceeEEEEe--eC-CcceeeeecCCCCCeEE
Q 013871 125 CGKDLQSQPLARRSFFRCST-VQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLT--TD-GTHEGLVPLRKEGPVHD 200 (434)
Q Consensus 125 ~~~~~~~~~i~~~~~~~~~~-~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~--~~-~~~~~~v~l~~~~~i~~ 200 (434)
+.+.. .+............ +...-+.+++++++......+ + .++++. .. +.....++.. .+....
T Consensus 206 lgt~~-~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~-------~--~~~l~~~~~~~~~~~~~~~~~-~~~~~~ 274 (686)
T PRK10115 206 IGTPA-SQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATT-------S--EVLLLDAELADAEPFVFLPRR-KDHEYS 274 (686)
T ss_pred CCCCh-hHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCcc-------c--cEEEEECcCCCCCceEEEECC-CCCEEE
Confidence 86521 01111111111111 222334588888644322211 1 233333 21 2111222222 222233
Q ss_pred EEECcCCCEEEEEEccCCC--eEEEEeccc-ceeEEe--C--CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEE
Q 013871 201 VQWSYSGSEFAVVYGFMPA--SATIFNKKC-RPILEL--G--SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQ 273 (434)
Q Consensus 201 v~wspdg~~~av~~g~~~~--~v~l~d~~~-~~~~~~--~--~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~ 273 (434)
+. ..+..|.+.+..... .+...++.. .....+ + ...+..+.++ +++|++....+....+.++|..+++.
T Consensus 275 ~~--~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~--~~~l~~~~~~~g~~~l~~~~~~~~~~ 350 (686)
T PRK10115 275 LD--HYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF--TDWLVVEERQRGLTSLRQINRKTREV 350 (686)
T ss_pred EE--eCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE--CCEEEEEEEeCCEEEEEEEcCCCCce
Confidence 32 234566665543222 444445442 111111 2 2356667776 55666665544344567777654433
Q ss_pred EEEe-eCC-CceEEEEC--CCCCEEEEEEcCCceeeCCcEEEEeecC
Q 013871 274 LGTT-RAE-CSVTSEWS--PDGRYFMTATTAPRLQIDNGIKIFHHNG 316 (434)
Q Consensus 274 i~~~-~~~-~~~~~~ws--pdg~~l~tas~~prl~~D~~i~iw~~~g 316 (434)
.... ..+ ....+.++ +++..++...+++.. -..+..+|..+
T Consensus 351 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~--P~~~y~~d~~~ 395 (686)
T PRK10115 351 IGIAFDDPAYVTWIAYNPEPETSRLRYGYSSMTT--PDTLFELDMDT 395 (686)
T ss_pred EEecCCCCceEeeecccCCCCCceEEEEEecCCC--CCEEEEEECCC
Confidence 2221 222 22224455 555444433332222 45666677654
No 342
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.51 E-value=0.014 Score=58.13 Aligned_cols=89 Identities=18% Similarity=0.375 Sum_probs=68.9
Q ss_pred CeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC--CCce-EEEECCCCCEEEEEEcCCceeeCCcEEEEee
Q 013871 238 PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA--ECSV-TSEWSPDGRYFMTATTAPRLQIDNGIKIFHH 314 (434)
Q Consensus 238 ~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~--~~~~-~~~wspdg~~l~tas~~prl~~D~~i~iw~~ 314 (434)
.+.-+.|+|.=.+||++. ..|.|-+.-++ ...+.++.- .+++ .++|.|||+.|++|-. ||+|+|-|+
T Consensus 22 ~i~~~ewnP~~dLiA~~t---~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~k------dG~I~L~Dv 91 (665)
T KOG4640|consen 22 NIKRIEWNPKMDLIATRT---EKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFK------DGTIRLHDV 91 (665)
T ss_pred ceEEEEEcCccchhheec---cCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEec------CCeEEEEEc
Confidence 455689999999999987 66789888777 667777663 3666 7999999999999999 999999999
Q ss_pred c-Cceeeeee---cccceeeEEEcCC
Q 013871 315 N-GSLFFKKM---FDKLFQAEWKPVS 336 (434)
Q Consensus 315 ~-g~~~~~~~---~~~~~~~~w~p~~ 336 (434)
. |..+.... ...+....|.|..
T Consensus 92 e~~~~l~~~~~s~e~~is~~~w~~~~ 117 (665)
T KOG4640|consen 92 EKGGRLVSFLFSVETDISKGIWDRIE 117 (665)
T ss_pred cCCCceeccccccccchheeecccce
Confidence 4 44555432 2467788887654
No 343
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=96.50 E-value=0.098 Score=46.78 Aligned_cols=70 Identities=13% Similarity=0.214 Sum_probs=55.9
Q ss_pred CeEEEEECcCCCEEEEEEccCCCeEEEEecccc--eeE--EeCCcCeeEEEECC-CCCeEEEEecCCCCCeEEEEEccC
Q 013871 197 PVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR--PIL--ELGSGPYNTVRWNP-KGKFLCLAGFGNLPGDMAFWDYVD 270 (434)
Q Consensus 197 ~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~--~~~--~~~~~~~~~i~~SP-~g~~l~~~~~~~~~g~i~iwd~~~ 270 (434)
.|+.++-+|.-..+.+ .|..++.+.+||.+.. ++. ..|+.+++.+-|+| ++..|++++ .+|.+.-||..+
T Consensus 181 ~v~~l~~hp~qq~~v~-cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~s---edGslw~wdas~ 255 (319)
T KOG4714|consen 181 AVTALCSHPAQQHLVC-CGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCS---EDGSLWHWDAST 255 (319)
T ss_pred cchhhhCCcccccEEE-EecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEec---CCCcEEEEcCCC
Confidence 4888999997777766 5888999999999743 222 23899999999999 557888888 778999999874
No 344
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.49 E-value=0.025 Score=54.12 Aligned_cols=119 Identities=18% Similarity=0.266 Sum_probs=81.7
Q ss_pred EccCCCeEEEEecccc---e--eEEeCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccC------CEEEEEee----
Q 013871 214 YGFMPASATIFNKKCR---P--ILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD------GKQLGTTR---- 278 (434)
Q Consensus 214 ~g~~~~~v~l~d~~~~---~--~~~~~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~------~~~i~~~~---- 278 (434)
+....+.+.++|..+. . ...+|..++..+.++|-|..+++.. ..|.|+-|..+. .+....+.
T Consensus 117 s~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD---~~gmVEyWs~e~~~qfPr~~l~~~~K~eTd 193 (558)
T KOG0882|consen 117 SLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSID---ISGMVEYWSAEGPFQFPRTNLNFELKHETD 193 (558)
T ss_pred ecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeecc---ccceeEeecCCCcccCccccccccccccch
Confidence 5667789999997532 2 2345899999999999999888776 568999998772 11111111
Q ss_pred ------C-CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceeeeeecccceeeEEEcCCCCCCC
Q 013871 279 ------A-ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKKMFDKLFQAEWKPVSPDKFG 341 (434)
Q Consensus 279 ------~-~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~~~~~~~~~~~~~~w~p~~~~~~~ 341 (434)
+ ...+++++||+|..+.+-.. |..|+++.+.+..+.+.--+.+......|..++-+.
T Consensus 194 Ly~f~K~Kt~pts~Efsp~g~qistl~~------DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~ 257 (558)
T KOG0882|consen 194 LYGFPKAKTEPTSFEFSPDGAQISTLNP------DRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLM 257 (558)
T ss_pred hhcccccccCccceEEccccCcccccCc------ccEEEEEEeccchhhhhhhccchhhhhccccccccc
Confidence 1 14566999999999999888 999999998655443333333445556666544443
No 345
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.46 E-value=0.0081 Score=56.57 Aligned_cols=74 Identities=16% Similarity=0.223 Sum_probs=62.8
Q ss_pred CCcCeeEEEECCCCC-eEEEEecCCCCCeEEEEEccCCEEEEEeeCC-CceEEEECCCCCEEEEEEcCCceeeCCcEEEE
Q 013871 235 GSGPYNTVRWNPKGK-FLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIF 312 (434)
Q Consensus 235 ~~~~~~~i~~SP~g~-~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-~~~~~~wspdg~~l~tas~~prl~~D~~i~iw 312 (434)
+...|..++|||+.+ ++.+++.|+ +|.|.|+++...+..+.++ .++.|+|.-|.++++-|+.. .|.|.||
T Consensus 192 ~g~~IrdlafSp~~~GLl~~asl~n---kiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl~-----nG~Vlvy 263 (463)
T KOG1645|consen 192 EGSFIRDLAFSPFNEGLLGLASLGN---KIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGLQ-----NGMVLVY 263 (463)
T ss_pred cchhhhhhccCccccceeeeeccCc---eEEEEecccceeeeheeccCCceeeeeccCCcceeEEecc-----CceEEEE
Confidence 566788999999998 777788666 9999999999888888777 66779999999998888875 7889999
Q ss_pred eecC
Q 013871 313 HHNG 316 (434)
Q Consensus 313 ~~~g 316 (434)
|+..
T Consensus 264 D~R~ 267 (463)
T KOG1645|consen 264 DMRQ 267 (463)
T ss_pred EccC
Confidence 9843
No 346
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.45 E-value=0.022 Score=55.75 Aligned_cols=111 Identities=14% Similarity=0.214 Sum_probs=69.5
Q ss_pred CCCeEEEEECcCCCEEEEEEccCCCeEEEEecccce-eEEeCC--cCeeEEEECCCCCeEEEEecCCCCCeEEE-EEccC
Q 013871 195 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP-ILELGS--GPYNTVRWNPKGKFLCLAGFGNLPGDMAF-WDYVD 270 (434)
Q Consensus 195 ~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~-~~~~~~--~~~~~i~~SP~g~~l~~~~~~~~~g~i~i-wd~~~ 270 (434)
++.+.+++..|.|+.+++ +-..+.+.+.|.+... +.++.. .....++ .|..+.|+... ++..+.+ |..-+
T Consensus 876 na~~R~iaVa~~GN~lAa--~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~sa---ldHslaVnWhald 949 (1034)
T KOG4190|consen 876 NALTRAIAVADKGNKLAA--ALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSA---LDHSLAVNWHALD 949 (1034)
T ss_pred chheeEEEeccCcchhhH--HhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhc---ccceeEeeehhcC
Confidence 467889999999999994 7778899999997654 333311 1111111 35566676666 4558888 88777
Q ss_pred CEEEEEeeCC-CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCce
Q 013871 271 GKQLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL 318 (434)
Q Consensus 271 ~~~i~~~~~~-~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~ 318 (434)
+......+-+ ....+ .-.-|..|+++.. .+-+.+|.-.+.+
T Consensus 950 gimh~q~kpppepahf-lqsvgpSLV~a~~------Gn~lgVYad~a~~ 991 (1034)
T KOG4190|consen 950 GIMHLQDKPPPEPAHF-LQSVGPSLVTAQN------GNILGVYADSAEL 991 (1034)
T ss_pred CeeeeccCCCCcchhh-hhccCceeEEecc------CcEEEEEecchhh
Confidence 7554444322 11111 1224677888888 7778888765554
No 347
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.42 E-value=0.15 Score=50.02 Aligned_cols=137 Identities=15% Similarity=0.185 Sum_probs=99.5
Q ss_pred EEEEECcCCCEEEEEEccCCCeEEEEecccceeEEe---CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEE
Q 013871 199 HDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLG 275 (434)
Q Consensus 199 ~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~~---~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~ 275 (434)
..++.++++....+. ......+.++|.....+... +. .-..++++|+|+.+.++..++.++.+.+.|..+.+.+.
T Consensus 77 ~~i~v~~~~~~vyv~-~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~ 154 (381)
T COG3391 77 AGVAVNPAGNKVYVT-TGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTA 154 (381)
T ss_pred cceeeCCCCCeEEEe-cCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEE
Confidence 467888888877764 44467999999765443332 22 33579999999998888764335799999999988777
Q ss_pred EeeCC-CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceeee------e-ecccceeeEEEcCCCCCCCC
Q 013871 276 TTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFK------K-MFDKLFQAEWKPVSPDKFGD 342 (434)
Q Consensus 276 ~~~~~-~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~~~~------~-~~~~~~~~~w~p~~~~~~~~ 342 (434)
..... ....++++|+|..++++... ++.|.+.+.++..+.. . ....-+.+.++|++..++-.
T Consensus 155 ~~~vG~~P~~~a~~p~g~~vyv~~~~-----~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~ 224 (381)
T COG3391 155 TIPVGNTPTGVAVDPDGNKVYVTNSD-----DNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVA 224 (381)
T ss_pred EEecCCCcceEEECCCCCeEEEEecC-----CCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEE
Confidence 65433 45679999999988888753 8999999987776553 1 22345788888888866654
No 348
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.29 E-value=1.3 Score=46.30 Aligned_cols=220 Identities=13% Similarity=0.116 Sum_probs=118.0
Q ss_pred EecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCC-cEEEEec-C---C--eEEEEeCC
Q 013871 6 TCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDE-AVACRMA-T---N--EIQFFDTT 78 (434)
Q Consensus 6 ~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~-~~la~~~-~---~--~i~v~~~~ 78 (434)
.||+.+..+|.++ .++.|.+.+ ..-+.++.|..... ..+ ..-|.-++ .+|++.+ | | .|+||+++
T Consensus 30 c~~s~~~~vvigt-----~~G~V~~Ln-~s~~~~~~fqa~~~--siv-~~L~~~~~~~~L~sv~Ed~~~np~llkiw~le 100 (933)
T KOG2114|consen 30 CCSSSTGSVVIGT-----ADGRVVILN-SSFQLIRGFQAYEQ--SIV-QFLYILNKQNFLFSVGEDEQGNPVLLKIWDLE 100 (933)
T ss_pred EEcCCCceEEEee-----ccccEEEec-ccceeeehheecch--hhh-hHhhcccCceEEEEEeecCCCCceEEEEeccc
Confidence 4777777787777 677777766 33444577766542 324 34455555 5666552 2 2 68999986
Q ss_pred CCCCc---eee---eee---cC----CeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCC-CCCceeeeeecccce
Q 013871 79 DFPKG---ILY---RLR---VP----GVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDL-QSQPLARRSFFRCST 144 (434)
Q Consensus 79 ~~~~~---~~~---~~~---~~----~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~-~~~~i~~~~~~~~~~ 144 (434)
..... ... ++. .+ .+..+++|-+ -..|++- -..|.|..+.=.-.. .+....-....+..+
T Consensus 101 k~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~-l~~Iv~G-----f~nG~V~~~~GDi~RDrgsr~~~~~~~~~pI 174 (933)
T KOG2114|consen 101 KVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSED-LKTIVCG-----FTNGLVICYKGDILRDRGSRQDYSHRGKEPI 174 (933)
T ss_pred ccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEcc-ccEEEEE-----ecCcEEEEEcCcchhccccceeeeccCCCCc
Confidence 53211 111 111 11 2444555554 3333331 122344443311000 011111111234567
Q ss_pred eEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCC-CCCeEEEEECcCCCEEEEEEccCCCeEEE
Q 013871 145 VQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK-EGPVHDVQWSYSGSEFAVVYGFMPASATI 223 (434)
Q Consensus 145 ~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~-~~~i~~v~wspdg~~~av~~g~~~~~v~l 223 (434)
+.+.+..+|+.+++++++.. ..+|.+. +.......+++ ..++++..+++...+|+++ + +.-+.+
T Consensus 175 TgL~~~~d~~s~lFv~Tt~~----------V~~y~l~--gr~p~~~~ld~~G~~lnCss~~~~t~qfIca-~--~e~l~f 239 (933)
T KOG2114|consen 175 TGLALRSDGKSVLFVATTEQ----------VMLYSLS--GRTPSLKVLDNNGISLNCSSFSDGTYQFICA-G--SEFLYF 239 (933)
T ss_pred eeeEEecCCceeEEEEecce----------eEEEEec--CCCcceeeeccCCccceeeecCCCCccEEEe-c--CceEEE
Confidence 78888899998766554421 1234443 33222333443 5678888888776667753 3 347999
Q ss_pred Eeccc-ceeEEeCCcCeeEEEECCCCCeEEEEe
Q 013871 224 FNKKC-RPILELGSGPYNTVRWNPKGKFLCLAG 255 (434)
Q Consensus 224 ~d~~~-~~~~~~~~~~~~~i~~SP~g~~l~~~~ 255 (434)
||..+ ++.+.|..+...-+.|...|.+|++..
T Consensus 240 Y~sd~~~~cfaf~~g~kk~~~~~~~g~~L~v~~ 272 (933)
T KOG2114|consen 240 YDSDGRGPCFAFEVGEKKEMLVFSFGLLLCVTT 272 (933)
T ss_pred EcCCCcceeeeecCCCeEEEEEEecCEEEEEEc
Confidence 99864 345566656666677777777777653
No 349
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=96.29 E-value=0.022 Score=52.73 Aligned_cols=88 Identities=14% Similarity=0.159 Sum_probs=58.1
Q ss_pred eeeeecCCCCCeEEEEECc-CCCEEEEEEccCCCeEEEEecccc----eeEEeCCcCeeEEEE-----CCCCCeEEEEec
Q 013871 187 EGLVPLRKEGPVHDVQWSY-SGSEFAVVYGFMPASATIFNKKCR----PILELGSGPYNTVRW-----NPKGKFLCLAGF 256 (434)
Q Consensus 187 ~~~v~l~~~~~i~~v~wsp-dg~~~av~~g~~~~~v~l~d~~~~----~~~~~~~~~~~~i~~-----SP~g~~l~~~~~ 256 (434)
.+..-+-+...|.+++.-. ++..+. +.+|+++|++||++.- .+.++ .+.+|..++ .|....++++|.
T Consensus 290 ~~a~rlyh~Ssvtslq~Lq~s~q~Lm--aS~M~gkikLyD~R~~K~~~~V~qY-eGHvN~~a~l~~~v~~eeg~I~s~Gd 366 (425)
T KOG2695|consen 290 WCAQRLYHDSSVTSLQILQFSQQKLM--ASDMTGKIKLYDLRATKCKKSVMQY-EGHVNLSAYLPAHVKEEEGSIFSVGD 366 (425)
T ss_pred cceEEEEcCcchhhhhhhccccceEe--eccCcCceeEeeehhhhcccceeee-ecccccccccccccccccceEEEccC
Confidence 3344444566666666554 344444 4789999999999622 23333 455555444 445567777874
Q ss_pred CCCCCeEEEEEccCCEEEEEeeCC
Q 013871 257 GNLPGDMAFWDYVDGKQLGTTRAE 280 (434)
Q Consensus 257 ~~~~g~i~iwd~~~~~~i~~~~~~ 280 (434)
| -..+||.++++.++.++.-+
T Consensus 367 D---cytRiWsl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 367 D---CYTRIWSLDSGHLLCTIPFP 387 (425)
T ss_pred e---eEEEEEecccCceeeccCCC
Confidence 4 49999999999999887665
No 350
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.25 E-value=0.11 Score=52.74 Aligned_cols=196 Identities=13% Similarity=0.186 Sum_probs=103.4
Q ss_pred eeecCCCcEEEEec-CCeEEEEeCCCCCCceeeee--ecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCC
Q 013871 55 IRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRL--RVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQS 131 (434)
Q Consensus 55 ~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~--~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~ 131 (434)
-+++..++|++.++ .|.|.+|+-..... ...+. ....+....+|++ +.++|+ +++.+.|.++.+...-+.
T Consensus 39 Tc~dst~~~l~~GsS~G~lyl~~R~~~~~-~~~~~~~~~~~~~~~~vs~~-e~lvAa-----gt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 39 TCVDATEEYLAMGSSAGSVYLYNRHTGEM-RKLKNEGATGITCVRSVSSV-EYLVAA-----GTASGRVSVFQLNKELPR 111 (726)
T ss_pred EEeecCCceEEEecccceEEEEecCchhh-hcccccCccceEEEEEecch-hHhhhh-----hcCCceEEeehhhccCCC
Confidence 35667889999985 48999998655321 11111 2223445667776 444442 456678888887652111
Q ss_pred Cceeeeee---cccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeC--CcceeeeecCCCCCeEEEEECcC
Q 013871 132 QPLARRSF---FRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTD--GTHEGLVPLRKEGPVHDVQWSYS 206 (434)
Q Consensus 132 ~~i~~~~~---~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~--~~~~~~v~l~~~~~i~~v~wspd 206 (434)
..+....+ |+..++++.|+++|..+.. .|..|+.- +..++.. .......-+...++|-.+... +
T Consensus 112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~ys-----GD~~Gkv~-----~~~L~s~~~~~~~~q~il~~ds~IVQlD~~-q 180 (726)
T KOG3621|consen 112 DLDYVTPCDKSHKCRVTALEWSKNGMKLYS-----GDSQGKVV-----LTELDSRQAFLSKSQEILSEDSEIVQLDYL-Q 180 (726)
T ss_pred cceeeccccccCCceEEEEEecccccEEee-----cCCCceEE-----EEEechhhhhccccceeeccCcceEEeecc-c
Confidence 11211111 4567889999999998765 45555532 2333321 000111112235677666655 2
Q ss_pred CCEEEEEEccCCCeEEEEecccceeEEeCCcCeeE-----EEECCC----CCeEEEEecCCCCCeEEEEEcc-CCEEEEE
Q 013871 207 GSEFAVVYGFMPASATIFNKKCRPILELGSGPYNT-----VRWNPK----GKFLCLAGFGNLPGDMAFWDYV-DGKQLGT 276 (434)
Q Consensus 207 g~~~av~~g~~~~~v~l~d~~~~~~~~~~~~~~~~-----i~~SP~----g~~l~~~~~~~~~g~i~iwd~~-~~~~i~~ 276 (434)
.++.| +.. -+..+++++.+.+.++++.++.. .+|-|- ..-.+.++.-+ .++|..+ .|+.+.+
T Consensus 181 -~~LLV-Stl--~r~~Lc~tE~eti~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaRPG----~RlWead~~G~V~~T 252 (726)
T KOG3621|consen 181 -SYLLV-STL--TRCILCQTEAETITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCARPG----LRLWEADFAGEVIKT 252 (726)
T ss_pred -ceehH-hhh--hhhheeecchhHHHHhcCCCcCCccccceEEeeccccCCCceEEEecCC----CceEEeecceeEEEe
Confidence 33443 222 25677888766666666554443 333332 22333444332 6677655 3444443
No 351
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.08 E-value=0.022 Score=33.77 Aligned_cols=27 Identities=33% Similarity=0.695 Sum_probs=24.1
Q ss_pred CceEEEECCCCCEEEEEEcCCceeeCCcEEEEe
Q 013871 281 CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFH 313 (434)
Q Consensus 281 ~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~ 313 (434)
.+..+.|+|+++++++++. |+.+++|+
T Consensus 14 ~i~~~~~~~~~~~~~~~~~------d~~~~~~~ 40 (40)
T smart00320 14 PVTSVAFSPDGKYLASASD------DGTIKLWD 40 (40)
T ss_pred ceeEEEECCCCCEEEEecC------CCeEEEcC
Confidence 5567999999999999999 99999996
No 352
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.03 E-value=1.4 Score=41.61 Aligned_cols=127 Identities=16% Similarity=0.144 Sum_probs=79.5
Q ss_pred CCeEEEEECcCCCEEEEEEccCC------------CeEEEEecccceeEEe--CCcCeeEEEECCCCCeEEEEecCCCCC
Q 013871 196 GPVHDVQWSYSGSEFAVVYGFMP------------ASATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPG 261 (434)
Q Consensus 196 ~~i~~v~wspdg~~~av~~g~~~------------~~v~l~d~~~~~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g 261 (434)
..-++....|+|+..+ +.|. +.++.+|..+..+..+ +-..-|.|+|||||+.|.++... .+
T Consensus 111 ~r~ND~~v~pdG~~wf---gt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~--~~ 185 (307)
T COG3386 111 NRPNDGVVDPDGRIWF---GDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTP--AN 185 (307)
T ss_pred CCCCceeEcCCCCEEE---eCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCC--CC
Confidence 4557888899987666 4444 2456666544444333 23445889999999988888643 36
Q ss_pred eEEEEEccC--C----EE-EEEee-CCC-ceEEEECCCCCEEEEEEcCCceeeCC-cEEEEeecCceeeeeecc--ccee
Q 013871 262 DMAFWDYVD--G----KQ-LGTTR-AEC-SVTSEWSPDGRYFMTATTAPRLQIDN-GIKIFHHNGSLFFKKMFD--KLFQ 329 (434)
Q Consensus 262 ~i~iwd~~~--~----~~-i~~~~-~~~-~~~~~wspdg~~l~tas~~prl~~D~-~i~iw~~~g~~~~~~~~~--~~~~ 329 (434)
.|+-|+... + +. ...+. ... .-.++...+|.+.+.+.. ++ .|.+|+-+|+++.....+ ...+
T Consensus 186 ~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~------~g~~v~~~~pdG~l~~~i~lP~~~~t~ 259 (307)
T COG3386 186 RIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVW------GGGRVVRFNPDGKLLGEIKLPVKRPTN 259 (307)
T ss_pred eEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEeccc------CCceEEEECCCCcEEEEEECCCCCCcc
Confidence 888887752 2 11 11111 122 223778888888875554 43 899999999988877554 3344
Q ss_pred eEEE
Q 013871 330 AEWK 333 (434)
Q Consensus 330 ~~w~ 333 (434)
++|.
T Consensus 260 ~~Fg 263 (307)
T COG3386 260 PAFG 263 (307)
T ss_pred ceEe
Confidence 4443
No 353
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=95.90 E-value=1.7 Score=41.61 Aligned_cols=243 Identities=12% Similarity=0.138 Sum_probs=111.1
Q ss_pred CCCeeeecCCCcEEEEecCCeEEEEeCCCCCCceeeee------ecCCeeEEEEeCC--CCCeE-EEEec-CCCCCCceE
Q 013871 51 TWPSIRFSSDEAVACRMATNEIQFFDTTDFPKGILYRL------RVPGVAAFEVSKA--PGSHV-AVFVP-ESKGSPASV 120 (434)
Q Consensus 51 ~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~~~~~~~------~~~~v~~~~~sp~--~~~~i-a~~~~-~~~~~~~~v 120 (434)
.| .|+|.|||+++++-..+.|++++...........+ ...+...++++|+ .+..+ .++.. .........
T Consensus 4 P~-~~a~~pdG~l~v~e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~~ 82 (331)
T PF07995_consen 4 PR-SMAFLPDGRLLVAERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDNDN 82 (331)
T ss_dssp EE-EEEEETTSCEEEEETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEEE
T ss_pred ce-EEEEeCCCcEEEEeCCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcce
Confidence 34 79999999999988889999999322111111111 1236789999995 12232 33332 122223333
Q ss_pred EEEE--cCCCC----CCCceeee-ee---cccceeEEEECCCCCeEEEEEEeccc----ccCceeecceeEEEEeeCCcc
Q 013871 121 QIYA--CGKDL----QSQPLARR-SF---FRCSTVQLNWNRGSTGLLAVAQSDVD----KTNQSYYGESKLNYLTTDGTH 186 (434)
Q Consensus 121 ~i~~--~~~~~----~~~~i~~~-~~---~~~~~~~~~ws~~G~~l~~~~~~~~d----~~~~~~~g~~~l~~l~~~~~~ 186 (434)
+|.. +.... ..+.+... .. .......|.|.||| .|.+.+....+ .......| .+..++..+.-
T Consensus 83 ~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG-~LYvs~G~~~~~~~~~~~~~~~G--~ilri~~dG~~ 159 (331)
T PF07995_consen 83 RVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDG-KLYVSVGDGGNDDNAQDPNSLRG--KILRIDPDGSI 159 (331)
T ss_dssp EEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTS-EEEEEEB-TTTGGGGCSTTSSTT--EEEEEETTSSB
T ss_pred eeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCC-cEEEEeCCCCCcccccccccccc--eEEEecccCcC
Confidence 4433 32210 01111111 11 12344579999999 55544322222 11112223 35666655531
Q ss_pred eeeeecC----CCCCe--------EEEEECcC-CCEEEEEEccCCC-eEEEEec---------c------c---------
Q 013871 187 EGLVPLR----KEGPV--------HDVQWSYS-GSEFAVVYGFMPA-SATIFNK---------K------C--------- 228 (434)
Q Consensus 187 ~~~v~l~----~~~~i--------~~v~wspd-g~~~av~~g~~~~-~v~l~d~---------~------~--------- 228 (434)
...-+.- ....| ..++|.|. |..++.-.|.... .|.+..- . .
T Consensus 160 p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~~ 239 (331)
T PF07995_consen 160 PADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPSC 239 (331)
T ss_dssp -TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS-
T ss_pred CCCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccCC
Confidence 0000100 01222 47999998 7766653332211 3333210 0 0
Q ss_pred ----ceeEEe-CCcCeeEEEECCCCC------eEEEEecCCCCCeEEEEEccCCEEEEEe----eCC--CceEEEECCCC
Q 013871 229 ----RPILEL-GSGPYNTVRWNPKGK------FLCLAGFGNLPGDMAFWDYVDGKQLGTT----RAE--CSVTSEWSPDG 291 (434)
Q Consensus 229 ----~~~~~~-~~~~~~~i~~SP~g~------~l~~~~~~~~~g~i~iwd~~~~~~i~~~----~~~--~~~~~~wspdg 291 (434)
.++..+ +......+.|-.... .++++..+ .+.|...+++....+... ... .+..++..|||
T Consensus 240 ~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG 317 (331)
T PF07995_consen 240 PGFVPPVFAYPPHSAPTGIIFYRGSAFPEYRGDLFVADYG--GGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDG 317 (331)
T ss_dssp TTS---SEEETTT--EEEEEEE-SSSSGGGTTEEEEEETT--TTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTS
T ss_pred CCcCccceeecCccccCceEEECCccCccccCcEEEecCC--CCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCC
Confidence 112222 223334455443222 23445543 368888887755322211 112 46779999999
Q ss_pred CEEEEEEc
Q 013871 292 RYFMTATT 299 (434)
Q Consensus 292 ~~l~tas~ 299 (434)
..+++...
T Consensus 318 ~Lyv~~d~ 325 (331)
T PF07995_consen 318 ALYVSDDS 325 (331)
T ss_dssp EEEEEE-T
T ss_pred eEEEEECC
Confidence 98888776
No 354
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.81 E-value=0.022 Score=37.08 Aligned_cols=34 Identities=15% Similarity=0.283 Sum_probs=29.9
Q ss_pred CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceee
Q 013871 281 CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFF 320 (434)
Q Consensus 281 ~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~~~ 320 (434)
.+..++|+|....||.++. ||.|.|+.++|+.+.
T Consensus 13 ~v~~~~w~P~mdLiA~~t~------~g~v~v~Rl~~qriw 46 (47)
T PF12894_consen 13 RVSCMSWCPTMDLIALGTE------DGEVLVYRLNWQRIW 46 (47)
T ss_pred cEEEEEECCCCCEEEEEEC------CCeEEEEECCCcCcc
Confidence 4556999999999999999 999999999887653
No 355
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.78 E-value=0.041 Score=53.97 Aligned_cols=180 Identities=13% Similarity=0.158 Sum_probs=104.0
Q ss_pred CCCceEEEEEcCCCC--CCCcee--eeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCccee--
Q 013871 115 GSPASVQIYACGKDL--QSQPLA--RRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEG-- 188 (434)
Q Consensus 115 ~~~~~v~i~~~~~~~--~~~~i~--~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~-- 188 (434)
..+.+|++|.+.... .+..-+ +.+.|+..+..+.+-.+-.+++ ++| | .+++++..-+..-
T Consensus 754 SkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~---ScD---------~--giHlWDPFigr~Laq 819 (1034)
T KOG4190|consen 754 SKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIA---SCD---------G--GIHLWDPFIGRLLAQ 819 (1034)
T ss_pred cCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceee---ecc---------C--cceeecccccchhHh
Confidence 456789999986421 122222 3334555565665555544432 222 1 3555543332111
Q ss_pred eeecCCCCCeEEEEECcC-CCEEEEEEccCCCeEEEEecc-cceeEEe-------CCcCeeEEEECCCCCeEEEEecCCC
Q 013871 189 LVPLRKEGPVHDVQWSYS-GSEFAVVYGFMPASATIFNKK-CRPILEL-------GSGPYNTVRWNPKGKFLCLAGFGNL 259 (434)
Q Consensus 189 ~v~l~~~~~i~~v~wspd-g~~~av~~g~~~~~v~l~d~~-~~~~~~~-------~~~~~~~i~~SP~g~~l~~~~~~~~ 259 (434)
...-.+++.+..+.--|+ .+.+.+..+....++++||.+ |+-+-++ ..+.+.+++..|.|++++.+- .
T Consensus 820 ~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~L---S 896 (1034)
T KOG4190|consen 820 MEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAAL---S 896 (1034)
T ss_pred hhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHh---c
Confidence 111123444545554454 344444333555699999987 3222222 346678999999999998775 4
Q ss_pred CCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEE-EeecCce
Q 013871 260 PGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKI-FHHNGSL 318 (434)
Q Consensus 260 ~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~i-w~~~g~~ 318 (434)
+|.|.+.|.++|+.|....-- +...++ .|..+.|+.... |.++-+ |+.....
T Consensus 897 nGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~sal------dHslaVnWhaldgi 951 (1034)
T KOG4190|consen 897 NGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSAL------DHSLAVNWHALDGI 951 (1034)
T ss_pred CCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcc------cceeEeeehhcCCe
Confidence 589999999999988765432 112222 466677777766 999999 9874443
No 356
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.74 E-value=0.57 Score=46.98 Aligned_cols=111 Identities=15% Similarity=0.246 Sum_probs=67.3
Q ss_pred CCCeEEEEECcCC-----CEEEEEEccCCCeEEEEecc------cceeE----Ee-CCcCe--eEEEECCCCCeEEEEec
Q 013871 195 EGPVHDVQWSYSG-----SEFAVVYGFMPASATIFNKK------CRPIL----EL-GSGPY--NTVRWNPKGKFLCLAGF 256 (434)
Q Consensus 195 ~~~i~~v~wspdg-----~~~av~~g~~~~~v~l~d~~------~~~~~----~~-~~~~~--~~i~~SP~g~~l~~~~~ 256 (434)
-..|+.+.|+|-+ ..+||- .-..|++|-+. .+.+. ++ ..-++ -.+.|+|....|++-..
T Consensus 56 FEhV~GlsW~P~~~~~~paLLAVQ---HkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~ 132 (671)
T PF15390_consen 56 FEHVHGLSWAPPCTADTPALLAVQ---HKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTA 132 (671)
T ss_pred cceeeeeeecCcccCCCCceEEEe---ccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEec
Confidence 4678999999953 345542 23489999763 11111 11 11222 24789999998888764
Q ss_pred CCCCCeEEEEEcc--CCEEEEEeeCCCceE-EEECCCCCEEEEEEcCCceeeCCcEEEEeecC
Q 013871 257 GNLPGDMAFWDYV--DGKQLGTTRAECSVT-SEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG 316 (434)
Q Consensus 257 ~~~~g~i~iwd~~--~~~~i~~~~~~~~~~-~~wspdg~~l~tas~~prl~~D~~i~iw~~~g 316 (434)
.. .-.++++. +.+....+...+-++ -+|.+||+.|++|-.+ .=.-+|||-..
T Consensus 133 ~d---vSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGS-----sLHSyiWd~~q 187 (671)
T PF15390_consen 133 RD---VSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGS-----SLHSYIWDSAQ 187 (671)
T ss_pred Cc---eeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCC-----eEEEEEecCch
Confidence 32 23444543 335555566665554 7899999999998752 22346776533
No 357
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=95.67 E-value=0.038 Score=32.66 Aligned_cols=30 Identities=37% Similarity=0.840 Sum_probs=25.8
Q ss_pred CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEE
Q 013871 235 GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWD 267 (434)
Q Consensus 235 ~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd 267 (434)
+...++++.|+|+++++++++ .+|.+.+||
T Consensus 11 ~~~~i~~~~~~~~~~~~~~~~---~d~~~~~~~ 40 (40)
T smart00320 11 HTGPVTSVAFSPDGKYLASAS---DDGTIKLWD 40 (40)
T ss_pred cCCceeEEEECCCCCEEEEec---CCCeEEEcC
Confidence 567889999999999999888 556999996
No 358
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=95.65 E-value=1.5 Score=39.25 Aligned_cols=98 Identities=17% Similarity=0.245 Sum_probs=56.9
Q ss_pred CCEEEEEEccCCCeEEEEecc-cceeEEe--CCcC----------e-eEEEECCCCCeEEEEecCCCCCe-EEEEEccCC
Q 013871 207 GSEFAVVYGFMPASATIFNKK-CRPILEL--GSGP----------Y-NTVRWNPKGKFLCLAGFGNLPGD-MAFWDYVDG 271 (434)
Q Consensus 207 g~~~av~~g~~~~~v~l~d~~-~~~~~~~--~~~~----------~-~~i~~SP~g~~l~~~~~~~~~g~-i~iwd~~~~ 271 (434)
+..+++ +..++.+..+|.+ ++.+... .... . ..+.++ +| .+.+++ .+|. +.+ |..++
T Consensus 122 ~~~~~~--~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~---~~g~~~~~-d~~tg 193 (238)
T PF13360_consen 122 GDRLYV--GTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVIS-DG-RVYVSS---GDGRVVAV-DLATG 193 (238)
T ss_dssp TTEEEE--EETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECC-TT-EEEEEC---CTSSEEEE-ETTTT
T ss_pred cCEEEE--EeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEE-CC-EEEEEc---CCCeEEEE-ECCCC
Confidence 555654 4446788888876 4444433 2111 1 223333 45 555554 2344 555 99999
Q ss_pred EEEEEeeCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEee-cCcee
Q 013871 272 KQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLF 319 (434)
Q Consensus 272 ~~i~~~~~~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~-~g~~~ 319 (434)
+.+....... ......+++..|+.++. ++.+.+||. +|+.+
T Consensus 194 ~~~w~~~~~~-~~~~~~~~~~~l~~~~~------~~~l~~~d~~tG~~~ 235 (238)
T PF13360_consen 194 EKLWSKPISG-IYSLPSVDGGTLYVTSS------DGRLYALDLKTGKVV 235 (238)
T ss_dssp EEEEEECSS--ECECEECCCTEEEEEET------TTEEEEEETTTTEEE
T ss_pred CEEEEecCCC-ccCCceeeCCEEEEEeC------CCEEEEEECCCCCEE
Confidence 8765443222 22225678888888887 999999997 55543
No 359
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.56 E-value=0.25 Score=50.92 Aligned_cols=129 Identities=14% Similarity=0.119 Sum_probs=82.8
Q ss_pred CCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCC-----CcEEEEecCCeEEEEeCCCCCCce
Q 013871 10 VGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSD-----EAVACRMATNEIQFFDTTDFPKGI 84 (434)
Q Consensus 10 ~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d-----~~~la~~~~~~i~v~~~~~~~~~~ 84 (434)
+|.|++|++ .|+.|.|-.+-+.+..+++..+ ....+++++|| .+.+++++...+.+++-.=++...
T Consensus 82 ~Gey~asCS-----~DGkv~I~sl~~~~~~~~~df~----rpiksial~Pd~~~~~sk~fv~GG~aglvL~er~wlgnk~ 152 (846)
T KOG2066|consen 82 EGEYVASCS-----DDGKVVIGSLFTDDEITQYDFK----RPIKSIALHPDFSRQQSKQFVSGGMAGLVLSERNWLGNKD 152 (846)
T ss_pred CCceEEEec-----CCCcEEEeeccCCccceeEecC----CcceeEEeccchhhhhhhheeecCcceEEEehhhhhcCcc
Confidence 699999999 8999999999988887777665 45558899998 556666654337777743222211
Q ss_pred eeeee--cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeeccc------ceeEEEECCCCCeE
Q 013871 85 LYRLR--VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRC------STVQLNWNRGSTGL 156 (434)
Q Consensus 85 ~~~~~--~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~------~~~~~~ws~~G~~l 156 (434)
...++ -..|.++.|. +.+|| |..+. -|++|+++. ++.+........ -...+.|.++.+ |
T Consensus 153 ~v~l~~~eG~I~~i~W~---g~lIA-Wand~-----Gv~vyd~~~---~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-L 219 (846)
T KOG2066|consen 153 SVVLSEGEGPIHSIKWR---GNLIA-WANDD-----GVKVYDTPT---RQRLTNIPPPSQSVRPELFPPHLHWQDEDR-L 219 (846)
T ss_pred ceeeecCccceEEEEec---CcEEE-EecCC-----CcEEEeccc---cceeeccCCCCCCCCcccCCCceEecCCCe-E
Confidence 12222 3358888887 44554 44333 368999887 555555444322 225688988754 4
Q ss_pred EEEE
Q 013871 157 LAVA 160 (434)
Q Consensus 157 ~~~~ 160 (434)
++.+
T Consensus 220 VIGW 223 (846)
T KOG2066|consen 220 VIGW 223 (846)
T ss_pred EEec
Confidence 4443
No 360
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=95.52 E-value=0.02 Score=50.98 Aligned_cols=76 Identities=13% Similarity=0.223 Sum_probs=57.7
Q ss_pred cCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEE-EEEeeCC--CceEEEECC-CCCEEEEEEcCCceeeCCcEEEE
Q 013871 237 GPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQ-LGTTRAE--CSVTSEWSP-DGRYFMTATTAPRLQIDNGIKIF 312 (434)
Q Consensus 237 ~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~-i~~~~~~--~~~~~~wsp-dg~~l~tas~~prl~~D~~i~iw 312 (434)
..+.+++-+|.-+.+++.|. .+|.+-+||.++... ...+.+| .+..+-|+| ++..|+|++. ||.+..|
T Consensus 180 ~~v~~l~~hp~qq~~v~cgt--~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~se------dGslw~w 251 (319)
T KOG4714|consen 180 DAVTALCSHPAQQHLVCCGT--DDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSE------DGSLWHW 251 (319)
T ss_pred ccchhhhCCcccccEEEEec--CCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecC------CCcEEEE
Confidence 34888899998776665554 458999999988733 2333444 555689998 5889999999 9999999
Q ss_pred eecCceee
Q 013871 313 HHNGSLFF 320 (434)
Q Consensus 313 ~~~g~~~~ 320 (434)
|-++..+.
T Consensus 252 das~~~l~ 259 (319)
T KOG4714|consen 252 DASTTFLS 259 (319)
T ss_pred cCCCceEE
Confidence 99987665
No 361
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=95.40 E-value=0.061 Score=54.42 Aligned_cols=109 Identities=11% Similarity=0.166 Sum_probs=76.0
Q ss_pred CeEEEEECcCCCEEEEEEccCCCeEEEEecccceeEEe----CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC-
Q 013871 197 PVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL----GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG- 271 (434)
Q Consensus 197 ~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~~----~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~- 271 (434)
.|.=-+++-.++++++ |..-|.+++|+-.++....+ ..+.+..+..|++..++|.|+ ..|.|.++-++..
T Consensus 35 ~v~lTc~dst~~~l~~--GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt---~~g~V~v~ql~~~~ 109 (726)
T KOG3621|consen 35 RVKLTCVDATEEYLAM--GSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGT---ASGRVSVFQLNKEL 109 (726)
T ss_pred eEEEEEeecCCceEEE--ecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhc---CCceEEeehhhccC
Confidence 3444455567788886 67778999998766554443 345566788999988888776 5579999987753
Q ss_pred --EE--EEEeeC--C-CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecC
Q 013871 272 --KQ--LGTTRA--E-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG 316 (434)
Q Consensus 272 --~~--i~~~~~--~-~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g 316 (434)
.. +..... . .++.++||+||..|.+|.. .|.|.+-.++-
T Consensus 110 p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~------~Gkv~~~~L~s 155 (726)
T KOG3621|consen 110 PRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDS------QGKVVLTELDS 155 (726)
T ss_pred CCcceeeccccccCCceEEEEEecccccEEeecCC------CceEEEEEech
Confidence 22 222222 2 5667999999999999988 67776666554
No 362
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=95.12 E-value=0.18 Score=51.89 Aligned_cols=104 Identities=11% Similarity=0.089 Sum_probs=68.0
Q ss_pred eEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCCCc
Q 013871 4 LLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPKG 83 (434)
Q Consensus 4 ~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~~ 83 (434)
.|+|-|.|..++|.+..+.+....|+.+. .+|-.-..|...-.-.+.+..++|.-....++....|.|++|...++.-.
T Consensus 251 ~LSWkpqgS~~ati~td~~~~S~~ViFfE-rNGLrHGef~lr~~~dEk~~~~~wn~~s~vlav~~~n~~~lwttkNyhWY 329 (1243)
T COG5290 251 QLSWKPQGSKYATIGTDGCSTSESVIFFE-RNGLRHGEFDLRVGCDEKAFLENWNLLSTVLAVAEGNLLKLWTTKNYHWY 329 (1243)
T ss_pred ccccccCCceeeeeccCCCCCcceEEEEc-cCCcccCCccccCCchhhhhhhhhhHHHHHHHHhhcceEEEEEccceEEE
Confidence 47899999999999844333334566665 34422222221111113344677888888888888899999999886543
Q ss_pred eeeeeecCCeeEEEEeCCCCCeEEE
Q 013871 84 ILYRLRVPGVAAFEVSKAPGSHVAV 108 (434)
Q Consensus 84 ~~~~~~~~~v~~~~~sp~~~~~ia~ 108 (434)
....+.++++.-+.|+|..+.++.+
T Consensus 330 LK~e~~ip~~s~vkwhpe~~nTl~f 354 (1243)
T COG5290 330 LKVERQIPGISYVKWHPEEKNTLLF 354 (1243)
T ss_pred EEEeecCCCcceeeeccccCcEEEE
Confidence 3344567889999999986666543
No 363
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=95.11 E-value=2.4 Score=38.04 Aligned_cols=66 Identities=9% Similarity=0.042 Sum_probs=44.9
Q ss_pred cCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCCC
Q 013871 8 LRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPK 82 (434)
Q Consensus 8 SP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~ 82 (434)
.+++.+|++.+ .++.|..||..+|+.+.++..... ... .+ ...++.+++...++.|..+|..+...
T Consensus 33 ~~~~~~v~~~~-----~~~~l~~~d~~tG~~~W~~~~~~~--~~~-~~-~~~~~~v~v~~~~~~l~~~d~~tG~~ 98 (238)
T PF13360_consen 33 VPDGGRVYVAS-----GDGNLYALDAKTGKVLWRFDLPGP--ISG-AP-VVDGGRVYVGTSDGSLYALDAKTGKV 98 (238)
T ss_dssp EEETTEEEEEE-----TTSEEEEEETTTSEEEEEEECSSC--GGS-GE-EEETTEEEEEETTSEEEEEETTTSCE
T ss_pred EEeCCEEEEEc-----CCCEEEEEECCCCCEEEEeecccc--ccc-ee-eecccccccccceeeeEecccCCcce
Confidence 44666676666 689999999999999888776321 111 22 33456666656677999999777543
No 364
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=94.97 E-value=3.4 Score=39.25 Aligned_cols=108 Identities=13% Similarity=0.235 Sum_probs=64.4
Q ss_pred CCCeEEEEECcCCCEEEEEEccCCCeEEEEecccce-eEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEE--Ecc
Q 013871 195 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP-ILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFW--DYV 269 (434)
Q Consensus 195 ~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~-~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iw--d~~ 269 (434)
+++|++++-- +| ++++..| .++.+|++.... +... ...+......+..+.+|++|. ....|.++ +.+
T Consensus 88 ~g~V~ai~~~-~~-~lv~~~g---~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD---~~~sv~~~~~~~~ 159 (321)
T PF03178_consen 88 KGPVTAICSF-NG-RLVVAVG---NKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGD---AMKSVSLLRYDEE 159 (321)
T ss_dssp SS-EEEEEEE-TT-EEEEEET---TEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEE---SSSSEEEEEEETT
T ss_pred cCcceEhhhh-CC-EEEEeec---CEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEE---cccCEEEEEEEcc
Confidence 7899998865 34 4665444 599999986544 3322 233333334444467999887 33356665 443
Q ss_pred CCE--EEEEeeC-CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecC
Q 013871 270 DGK--QLGTTRA-ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG 316 (434)
Q Consensus 270 ~~~--~i~~~~~-~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g 316 (434)
..+ .+..-.. ..++.+.+-+|++.++.+.. ++.+.++.+..
T Consensus 160 ~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~------~gnl~~l~~~~ 203 (321)
T PF03178_consen 160 NNKLILVARDYQPRWVTAAEFLVDEDTIIVGDK------DGNLFVLRYNP 203 (321)
T ss_dssp TE-EEEEEEESS-BEEEEEEEE-SSSEEEEEET------TSEEEEEEE-S
T ss_pred CCEEEEEEecCCCccEEEEEEecCCcEEEEEcC------CCeEEEEEECC
Confidence 332 2332222 25666888877788888887 99999999863
No 365
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=94.97 E-value=0.08 Score=34.48 Aligned_cols=34 Identities=12% Similarity=0.371 Sum_probs=28.4
Q ss_pred CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEE
Q 013871 236 SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQ 273 (434)
Q Consensus 236 ~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~ 273 (434)
...+.++.|+|...+||++. .+|.|.++.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t---~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGT---EDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEE---CCCeEEEEEC-CCcC
Confidence 45688999999999999998 6689999988 5543
No 366
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=94.82 E-value=1.4 Score=46.89 Aligned_cols=243 Identities=14% Similarity=0.174 Sum_probs=118.0
Q ss_pred CcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec---C--C--eEEEEeCCCCCCceeeeeecC--CeeEE
Q 013871 26 KNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA---T--N--EIQFFDTTDFPKGILYRLRVP--GVAAF 96 (434)
Q Consensus 26 ~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~---~--~--~i~v~~~~~~~~~~~~~~~~~--~v~~~ 96 (434)
++|.+-|...+.. +.+.... ...+..+.|||||++||.+. . + .|.+-++.+... ...++.++ .|-..
T Consensus 329 ~~L~~~D~dG~n~-~~ve~~~--~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~-~~vkl~ve~aaiprw 404 (912)
T TIGR02171 329 GNLAYIDYTKGAS-RAVEIED--TISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGS-GLVKLPVENAAIPRW 404 (912)
T ss_pred CeEEEEecCCCCc-eEEEecC--CCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCC-CceEeecccccccce
Confidence 4788888654443 3331121 15555899999999999841 2 2 588888876443 22344443 46666
Q ss_pred EEeCCCCCeEEEEecCCCCCC-----ceEEEEEcCC----CCCCCceeeeeecccceeEEEECCCCCeEEEEEEeccccc
Q 013871 97 EVSKAPGSHVAVFVPESKGSP-----ASVQIYACGK----DLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKT 167 (434)
Q Consensus 97 ~~sp~~~~~ia~~~~~~~~~~-----~~v~i~~~~~----~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~ 167 (434)
.+..+++..| +|+.+.+... ..-.-|.++= +...+.+..-.+|..-...-...-.|..||-..-...+.
T Consensus 405 rv~e~gdt~i-vyv~~a~nn~d~~~~~~~stw~v~f~~gkfg~p~kl~dga~hggvs~~~~lavtga~llr~~~~~~~~- 482 (912)
T TIGR02171 405 RVLENGDTVI-VYVSDASNNKDDATFAAYSTWQVPFANGKFGTPKKLFDGAYHGGVSEDLNLAVSGARLLRAHVANEDV- 482 (912)
T ss_pred EecCCCCeEE-EEEcCCCCCcchhhhhhcceEEEEecCCCCCCchhhhccccccccccCCceeeehhhHhhhhhccccc-
Confidence 6777755555 4444332211 1234455541 111223333334432221111122233333111000000
Q ss_pred CceeecceeEEEEeeCCcceeeeecCCCC--CeEEEEECc-CCCEEEEEEccCC---CeEEEEecccceeEEeC--CcC-
Q 013871 168 NQSYYGESKLNYLTTDGTHEGLVPLRKEG--PVHDVQWSY-SGSEFAVVYGFMP---ASATIFNKKCRPILELG--SGP- 238 (434)
Q Consensus 168 ~~~~~g~~~l~~l~~~~~~~~~v~l~~~~--~i~~v~wsp-dg~~~av~~g~~~---~~v~l~d~~~~~~~~~~--~~~- 238 (434)
-.|...+|+ ++...|.+.|.+++ ...-+.|-- .|..|+ |..= ..+.|-|.+++.+..+. .+.
T Consensus 483 ---~~~~~~vwy---n~eqacn~sl~~d~~~rt~fldfgg~tg~~fv---g~~y~~he~~lvads~gklv~~v~ap~gyt 553 (912)
T TIGR02171 483 ---DNGKDDVWY---NGEQACNASLAKDGSKRTLFLDFGGSTGQAFV---GQKYGVHERLLVADSKGKLVRAVAAPAGYT 553 (912)
T ss_pred ---ccCccceee---cchhccchhhhccCCcceEEEecCCccchhhc---cccccceeEEEEecCCCchhhhccCCCCcc
Confidence 012222333 25556666665433 333455543 455665 3322 26777788887766541 110
Q ss_pred eeEEEECCCCCeEEEEecCCC---CCeEEEEEccCCEEEEEeeCCCce
Q 013871 239 YNTVRWNPKGKFLCLAGFGNL---PGDMAFWDYVDGKQLGTTRAECSV 283 (434)
Q Consensus 239 ~~~i~~SP~g~~l~~~~~~~~---~g~i~iwd~~~~~~i~~~~~~~~~ 283 (434)
...-.|--..+-++++..-|. .-+|.+.|+.+++.+...++....
T Consensus 554 fdh~ew~~~~~~~~vatl~n~~g~h~ki~lv~~~~~~i~~l~eg~elw 601 (912)
T TIGR02171 554 FDHTEWVTGRSNLAVATLTNVNGAHKKIALINLSDSKVTELVEGDELW 601 (912)
T ss_pred ccchhhhcCCCceEEEEeecCCCccceEEEEEcCCCceEEeecccccc
Confidence 001115444455556654443 347899999998877776664333
No 367
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=94.78 E-value=0.14 Score=53.52 Aligned_cols=95 Identities=14% Similarity=0.166 Sum_probs=74.6
Q ss_pred ccCCCeEEEEecccceeEEe---CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceEEEECCCC
Q 013871 215 GFMPASATIFNKKCRPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDG 291 (434)
Q Consensus 215 g~~~~~v~l~d~~~~~~~~~---~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~~~wspdg 291 (434)
|+-...+..+|+++...... ..+.+.-++. +++++.+|. -.|+|.+-|.++.+.++++.+|.-+..+|+-.|
T Consensus 153 Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~---t~G~V~LrD~~s~~~iht~~aHs~siSDfDv~G 227 (1118)
T KOG1275|consen 153 GGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGD---TRGTVFLRDPNSFETIHTFDAHSGSISDFDVQG 227 (1118)
T ss_pred cchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeec---ccceEEeecCCcCceeeeeeccccceeeeeccC
Confidence 44445777788876554433 3333554554 578888776 668999999999999999999988888999999
Q ss_pred CEEEEEEcCCce---eeCCcEEEEee
Q 013871 292 RYFMTATTAPRL---QIDNGIKIFHH 314 (434)
Q Consensus 292 ~~l~tas~~prl---~~D~~i~iw~~ 314 (434)
..|++++.+-|. .+|.-|+|||+
T Consensus 228 NlLitCG~S~R~~~l~~D~FvkVYDL 253 (1118)
T KOG1275|consen 228 NLLITCGYSMRRYNLAMDPFVKVYDL 253 (1118)
T ss_pred CeEEEeecccccccccccchhhhhhh
Confidence 999999988774 58999999997
No 368
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.70 E-value=3.4 Score=37.89 Aligned_cols=232 Identities=14% Similarity=0.135 Sum_probs=122.7
Q ss_pred CCCcEEEEEeecCcCCCCCCeeeecCCCcEE-EEe--cCCeEEEEeCCCCCCceeeeeecCC---eeEEEEeCCCCCeEE
Q 013871 34 ETGEAVYQLFQKNMTKTTWPSIRFSSDEAVA-CRM--ATNEIQFFDTTDFPKGILYRLRVPG---VAAFEVSKAPGSHVA 107 (434)
Q Consensus 34 ~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~l-a~~--~~~~i~v~~~~~~~~~~~~~~~~~~---v~~~~~sp~~~~~ia 107 (434)
+.|+++...... ..-..+.|+|-.... ++. =.-...+||.+......... ..++ .-.=.|||++..+.|
T Consensus 56 eaGk~v~~~~lp----aR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~-s~~~RHfyGHGvfs~dG~~LYA 130 (366)
T COG3490 56 EAGKIVFATALP----ARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLV-SQEGRHFYGHGVFSPDGRLLYA 130 (366)
T ss_pred cCCceeeeeecc----cccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEe-cccCceeecccccCCCCcEEEe
Confidence 567777654432 111257888865433 333 22367788887654322211 1111 111257888543333
Q ss_pred EEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEE---ec--ccccCc-eeecceeEEEEe
Q 013871 108 VFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQ---SD--VDKTNQ-SYYGESKLNYLT 181 (434)
Q Consensus 108 ~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~---~~--~d~~~~-~~~g~~~l~~l~ 181 (434)
. -.+....-+.|-||+.... -+.+...+.|....-.+.|.+||..+++.-. +. ...+.- .-..+..|.+++
T Consensus 131 T-Endfd~~rGViGvYd~r~~--fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld 207 (366)
T COG3490 131 T-ENDFDPNRGVIGVYDAREG--FQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLD 207 (366)
T ss_pred e-cCCCCCCCceEEEEecccc--cceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEe
Confidence 2 1122344578999998753 5666677778888889999999998776422 11 101000 001222344555
Q ss_pred -eCCcceeeeecC---CCCCeEEEEECcCCCEEEEEEccCCC------eEEEEecccceeEEeC---------CcCeeEE
Q 013871 182 -TDGTHEGLVPLR---KEGPVHDVQWSYSGSEFAVVYGFMPA------SATIFNKKCRPILELG---------SGPYNTV 242 (434)
Q Consensus 182 -~~~~~~~~v~l~---~~~~i~~v~wspdg~~~av~~g~~~~------~v~l~d~~~~~~~~~~---------~~~~~~i 242 (434)
..|.-.....|. +.-.|..++.-+||...+-+ .++.. -+-.+ .+++++.-+. ...+-+|
T Consensus 208 ~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgc-Qy~G~~~d~ppLvg~~-~~g~~l~~~~~pee~~~~~anYigsi 285 (366)
T COG3490 208 AATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGC-QYRGPRNDLPPLVGHF-RKGEPLEFLDLPEEQTAAFANYIGSI 285 (366)
T ss_pred ccccchhhhccCchhhhhcceeeeeeCCCCcEEEEE-EeeCCCccCCcceeec-cCCCcCcccCCCHHHHHHHHhhhhhe
Confidence 334332333332 23467788888888766532 22111 11111 1233322221 2345578
Q ss_pred EECCCCCeEEEEe-cCCCCCeEEEEEccCCEEEEEee
Q 013871 243 RWNPKGKFLCLAG-FGNLPGDMAFWDYVDGKQLGTTR 278 (434)
Q Consensus 243 ~~SP~g~~l~~~~-~~~~~g~i~iwd~~~~~~i~~~~ 278 (434)
+.+-+..++++.+ .|| ...+||..++..+....
T Consensus 286 A~n~~~glV~lTSP~GN---~~vi~da~tG~vv~~a~ 319 (366)
T COG3490 286 AANRRDGLVALTSPRGN---RAVIWDAATGAVVSEAA 319 (366)
T ss_pred eecccCCeEEEecCCCC---eEEEEEcCCCcEEeccc
Confidence 8887777766655 344 67789999998776543
No 369
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=94.67 E-value=0.6 Score=49.01 Aligned_cols=99 Identities=11% Similarity=0.202 Sum_probs=70.4
Q ss_pred CCCEEEEEEccCCCeEEEEecc-cceeEEe--CCcCeeEEEECCCCCeEEEEecCC------CCCeEEEEEccCCEEEEE
Q 013871 206 SGSEFAVVYGFMPASATIFNKK-CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGN------LPGDMAFWDYVDGKQLGT 276 (434)
Q Consensus 206 dg~~~av~~g~~~~~v~l~d~~-~~~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~------~~g~i~iwd~~~~~~i~~ 276 (434)
+++.+. +|...|+|.+-|.+ .+.++++ |.+.+. .|.=+|+.|+++|+.. .|--|+|||++..+.+.-
T Consensus 186 Nnr~lf--~G~t~G~V~LrD~~s~~~iht~~aHs~siS--DfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~P 261 (1118)
T KOG1275|consen 186 NNRNLF--CGDTRGTVFLRDPNSFETIHTFDAHSGSIS--DFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSP 261 (1118)
T ss_pred cCcEEE--eecccceEEeecCCcCceeeeeecccccee--eeeccCCeEEEeecccccccccccchhhhhhhhhhhccCC
Confidence 556666 58889999999986 5666766 666665 4556799999988753 255688999886332110
Q ss_pred ------------------------------------ee------------CCCceEEEECCCCCEEEEEEcCCceeeCCc
Q 013871 277 ------------------------------------TR------------AECSVTSEWSPDGRYFMTATTAPRLQIDNG 308 (434)
Q Consensus 277 ------------------------------------~~------------~~~~~~~~wspdg~~l~tas~~prl~~D~~ 308 (434)
+. +...+.+++|+.|..++.+-. +|.
T Consensus 262 I~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~------~g~ 335 (1118)
T KOG1275|consen 262 IQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDH------EGH 335 (1118)
T ss_pred cccccCchhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecc------cCc
Confidence 00 112345889999999999998 999
Q ss_pred EEEEee
Q 013871 309 IKIFHH 314 (434)
Q Consensus 309 i~iw~~ 314 (434)
|.+|.-
T Consensus 336 v~~wa~ 341 (1118)
T KOG1275|consen 336 VNLWAD 341 (1118)
T ss_pred EeeecC
Confidence 999984
No 370
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=94.67 E-value=4.9 Score=39.50 Aligned_cols=92 Identities=7% Similarity=0.094 Sum_probs=51.9
Q ss_pred CCEEEEEEccCCCeEEEEecccc-eeEEeC---CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--
Q 013871 207 GSEFAVVYGFMPASATIFNKKCR-PILELG---SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-- 280 (434)
Q Consensus 207 g~~~av~~g~~~~~v~l~d~~~~-~~~~~~---~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-- 280 (434)
+..+.+ +..++.+..+|.+.. .+-... .....+... .+..|++++ .+|.|++.|..+++.+...+-.
T Consensus 294 ~~~vy~--~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~---~~G~l~~ld~~tG~~~~~~~~~~~ 366 (394)
T PRK11138 294 GGRIYL--VDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGD---SEGYLHWINREDGRFVAQQKVDSS 366 (394)
T ss_pred CCEEEE--EcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEe---CCCEEEEEECCCCCEEEEEEcCCC
Confidence 444554 345778888888543 332221 111111111 245666666 5689999999999988776532
Q ss_pred CceE-EEECCCCCEEEEEEcCCceeeCCcEEEEe
Q 013871 281 CSVT-SEWSPDGRYFMTATTAPRLQIDNGIKIFH 313 (434)
Q Consensus 281 ~~~~-~~wspdg~~l~tas~~prl~~D~~i~iw~ 313 (434)
.+.. ... .+..|+.++. |+.+..++
T Consensus 367 ~~~s~P~~--~~~~l~v~t~------~G~l~~~~ 392 (394)
T PRK11138 367 GFLSEPVV--ADDKLLIQAR------DGTVYAIT 392 (394)
T ss_pred cceeCCEE--ECCEEEEEeC------CceEEEEe
Confidence 1111 111 2446777777 77776654
No 371
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=94.54 E-value=0.79 Score=48.57 Aligned_cols=123 Identities=11% Similarity=0.230 Sum_probs=74.6
Q ss_pred eEEEEeeCCccee-eeecCCCCCeEEEEECcCC--------CEEEEEEccCCCeEEEEeccc--ceeEE-----e-CCcC
Q 013871 176 KLNYLTTDGTHEG-LVPLRKEGPVHDVQWSYSG--------SEFAVVYGFMPASATIFNKKC--RPILE-----L-GSGP 238 (434)
Q Consensus 176 ~l~~l~~~~~~~~-~v~l~~~~~i~~v~wspdg--------~~~av~~g~~~~~v~l~d~~~--~~~~~-----~-~~~~ 238 (434)
.||.+++..+... .-.+....+|.+++ |+. ..|+ |-.+..+..||.+- +.+.. + ....
T Consensus 505 ~ly~mDLe~GKVV~eW~~~~~~~v~~~~--p~~K~aqlt~e~tfl---Gls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~ 579 (794)
T PF08553_consen 505 KLYKMDLERGKVVEEWKVHDDIPVVDIA--PDSKFAQLTNEQTFL---GLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNN 579 (794)
T ss_pred ceEEEecCCCcEEEEeecCCCcceeEec--ccccccccCCCceEE---EECCCceEEeccCCCCCceeeccccccccCCC
Confidence 4777777655321 11233344555544 321 2233 56677899999863 22221 2 2345
Q ss_pred eeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC--CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEee
Q 013871 239 YNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA--ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH 314 (434)
Q Consensus 239 ~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~--~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~ 314 (434)
..|++-+.+|. ||+|+ ..|.|++||.-..+.-..+.+ ..++.+..+.||++|+..+ +.-+.|.+.
T Consensus 580 Fs~~aTt~~G~-iavgs---~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-------~tyLlLi~t 646 (794)
T PF08553_consen 580 FSCFATTEDGY-IAVGS---NKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-------KTYLLLIDT 646 (794)
T ss_pred ceEEEecCCce-EEEEe---CCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-------cceEEEEEE
Confidence 66777777764 56676 678999999543322222322 3677799999999988665 677788875
No 372
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=94.48 E-value=0.12 Score=32.60 Aligned_cols=31 Identities=6% Similarity=-0.057 Sum_probs=23.3
Q ss_pred CcceEEecCCCc---EEEEEecCCCCCCCcEEEEEcCCC
Q 013871 1 MLLLLTCLRVGL---IIQTFQKSSTPQEKNVILWKTETG 36 (434)
Q Consensus 1 ~V~~l~fSP~g~---~L~t~~~~~~~~d~~v~iWd~~~g 36 (434)
.|+++.|||... +|+..+ .-+.|.|+|+.++
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E-----~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAE-----HQGRVHIVDTRSN 35 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEc-----cCCeEEEEEcccC
Confidence 378999998655 666555 4578999999854
No 373
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.39 E-value=1.2 Score=41.00 Aligned_cols=136 Identities=14% Similarity=0.158 Sum_probs=90.4
Q ss_pred CCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeEEeCC---cCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC
Q 013871 195 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGS---GPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG 271 (434)
Q Consensus 195 ~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~~~~---~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~ 271 (434)
...+.++.|+|+.+.+..+ ...|..+.-.+.+++.+..++- ..-.+|.|.-+|++.++--. ++.++++.+...
T Consensus 85 ~~nvS~LTynp~~rtLFav-~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER---~~~l~~~~vd~~ 160 (316)
T COG3204 85 TANVSSLTYNPDTRTLFAV-TNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDER---DRALYLFTVDAD 160 (316)
T ss_pred cccccceeeCCCcceEEEe-cCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehh---cceEEEEEEcCC
Confidence 3458999999999888775 5667777777888988887742 33356899988888877653 458888876644
Q ss_pred E-EEE---------EeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCce--ee--e---------eeccc
Q 013871 272 K-QLG---------TTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL--FF--K---------KMFDK 326 (434)
Q Consensus 272 ~-~i~---------~~~~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~--~~--~---------~~~~~ 326 (434)
. .+. ..... +.-.++|+|..+.|..+-. -+=+.|+.+++.. +. . .....
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKE------r~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~D 234 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKE------RNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLD 234 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEc------cCCcEEEEEecCCcccccccccCcccccceEeec
Confidence 1 111 11111 2223999999999999988 7888888876542 11 0 01234
Q ss_pred ceeeEEEcCCCCCC
Q 013871 327 LFQAEWKPVSPDKF 340 (434)
Q Consensus 327 ~~~~~w~p~~~~~~ 340 (434)
+..+.+++....|+
T Consensus 235 vSgl~~~~~~~~LL 248 (316)
T COG3204 235 VSGLEFNAITNSLL 248 (316)
T ss_pred cccceecCCCCcEE
Confidence 56667776655544
No 374
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.16 E-value=0.16 Score=54.00 Aligned_cols=83 Identities=17% Similarity=0.200 Sum_probs=60.2
Q ss_pred EccCCCeEEEEeccccee--EEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC-----CceE
Q 013871 214 YGFMPASATIFNKKCRPI--LEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-----CSVT 284 (434)
Q Consensus 214 ~g~~~~~v~l~d~~~~~~--~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-----~~~~ 284 (434)
.|...+.+-.+|..++.- +.- ..+++.+++|+-+|++++.|- .+|.|.+||+..++.+..+..+ .+..
T Consensus 104 i~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~---~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~ 180 (1206)
T KOG2079|consen 104 IGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGL---GDGHVTVWDMHRAKILKVITEHGAPVTGVIF 180 (1206)
T ss_pred EEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceecccc---CCCcEEEEEccCCcceeeeeecCCccceEEE
Confidence 366667888888876522 222 478999999999999988664 4489999999998776655433 4455
Q ss_pred EEECCCCCEEEEEEc
Q 013871 285 SEWSPDGRYFMTATT 299 (434)
Q Consensus 285 ~~wspdg~~l~tas~ 299 (434)
+.|..++..++++..
T Consensus 181 v~~t~~nS~llt~D~ 195 (1206)
T KOG2079|consen 181 VGRTSQNSKLLTSDT 195 (1206)
T ss_pred EEEeCCCcEEEEccC
Confidence 788888886666544
No 375
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=94.02 E-value=1.6 Score=46.41 Aligned_cols=123 Identities=12% Similarity=0.122 Sum_probs=78.3
Q ss_pred CCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCC--------CcEEEEecCCeEEEEeCCCCC-Cceeeeee----cC
Q 013871 25 EKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSD--------EAVACRMATNEIQFFDTTDFP-KGILYRLR----VP 91 (434)
Q Consensus 25 d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d--------~~~la~~~~~~i~v~~~~~~~-~~~~~~~~----~~ 91 (434)
...|.-.|++.|+.|..+..+.. .+...+.|+ ++.++...++.|..||..-.. +......+ ..
T Consensus 503 ~~~ly~mDLe~GKVV~eW~~~~~----~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~ 578 (794)
T PF08553_consen 503 PNKLYKMDLERGKVVEEWKVHDD----IPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKN 578 (794)
T ss_pred CCceEEEecCCCcEEEEeecCCC----cceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCC
Confidence 46788889999999999987642 224566664 345666678899999986432 11111111 11
Q ss_pred CeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEE
Q 013871 92 GVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQ 161 (434)
Q Consensus 92 ~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~ 161 (434)
...+++- .++.+||+ +...|.||||+--. ...-..+...+..++.+.-+.||++|+..+.
T Consensus 579 ~Fs~~aT--t~~G~iav-----gs~~G~IRLyd~~g---~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~ 638 (794)
T PF08553_consen 579 NFSCFAT--TEDGYIAV-----GSNKGDIRLYDRLG---KRAKTALPGLGDPIIGIDVTADGKWILATCK 638 (794)
T ss_pred CceEEEe--cCCceEEE-----EeCCCcEEeecccc---hhhhhcCCCCCCCeeEEEecCCCcEEEEeec
Confidence 2333333 33456665 35668999998433 3334444556788999999999999977653
No 376
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=93.99 E-value=3.5 Score=40.16 Aligned_cols=98 Identities=18% Similarity=0.248 Sum_probs=56.6
Q ss_pred CCeEEEEECcCCCEEEEEEccCCCeEEEE-eccc--------ceeEE-eC------CcCeeEEEECCCCCeEEEEecC-C
Q 013871 196 GPVHDVQWSYSGSEFAVVYGFMPASATIF-NKKC--------RPILE-LG------SGPYNTVRWNPKGKFLCLAGFG-N 258 (434)
Q Consensus 196 ~~i~~v~wspdg~~~av~~g~~~~~v~l~-d~~~--------~~~~~-~~------~~~~~~i~~SP~g~~l~~~~~~-~ 258 (434)
...+.+++.++| +.| +..+ .|..| |..+ +.+.+ +. ....+.+.|.|||.+.++-+.. +
T Consensus 72 ~~p~Gi~~~~~G--lyV--~~~~-~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~ 146 (367)
T TIGR02604 72 SMVTGLAVAVGG--VYV--ATPP-DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLA 146 (367)
T ss_pred CCccceeEecCC--EEE--eCCC-eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCC
Confidence 345789999988 433 2323 55545 4422 12222 32 2336789999999866554411 1
Q ss_pred ---------------CCCeEEEEEccCCEEEEEeeCC-CceEEEECCCCCEEEEEE
Q 013871 259 ---------------LPGDMAFWDYVDGKQLGTTRAE-CSVTSEWSPDGRYFMTAT 298 (434)
Q Consensus 259 ---------------~~g~i~iwd~~~~~~i~~~~~~-~~~~~~wspdg~~l~tas 298 (434)
..|.|.-+|.+.++......+. +...++|+|+|+.+++-.
T Consensus 147 ~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 147 SKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred ceeccCCCccCcccccCceEEEEecCCCeEEEEecCcCCCccceECCCCCEEEEcc
Confidence 1256777777665432222222 556699999999877643
No 377
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=93.90 E-value=9.7 Score=39.97 Aligned_cols=291 Identities=14% Similarity=0.110 Sum_probs=133.3
Q ss_pred ceEEecCCCcEEEEEecCCC-C---CCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CC--eEEEE
Q 013871 3 LLLTCLRVGLIIQTFQKSST-P---QEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TN--EIQFF 75 (434)
Q Consensus 3 ~~l~fSP~g~~L~t~~~~~~-~---~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~--~i~v~ 75 (434)
....++|.+..++....... . ....+.+-|..+ +...... .....+.|+||++++++.. ++ ..++|
T Consensus 16 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~~---~~~~~~~----~~~~~~~~spdg~~~~~~~~~~~~~~~l~ 88 (620)
T COG1506 16 SDPRVSPPGGRLAYILTGLDFLKPLYKSSLWVSDGKT---VRLLTFG----GGVSELRWSPDGSVLAFVSTDGGRVAQLY 88 (620)
T ss_pred cCcccCCCCceeEEeeccccccccccccceEEEeccc---ccccccC----CcccccccCCCCCEEEEEeccCCCcceEE
Confidence 44567888888887664211 1 123444433332 2222111 4445789999999999886 32 23444
Q ss_pred eCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCC----CCC----CceEEEEEcCCC-C--------CCCceeeee
Q 013871 76 DTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPES----KGS----PASVQIYACGKD-L--------QSQPLARRS 138 (434)
Q Consensus 76 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~----~~~----~~~v~i~~~~~~-~--------~~~~i~~~~ 138 (434)
-..... .......++....|+|.+ ..+++..++. .+. +..+.+|..... . .........
T Consensus 89 l~~~~g---~~~~~~~~v~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~d~~~~~~~~~ 164 (620)
T COG1506 89 LVDVGG---LITKTAFGVSDARWSPDG-DRIAFLTAEGASKRDGGDHLFVDRLPVWFDGRGGERSDLYVVDIESKLIKLG 164 (620)
T ss_pred EEecCC---ceeeeecccccceeCCCC-CeEEEEecccccccCCceeeeecccceeecCCCCcccceEEEccCccccccc
Confidence 332211 233444567788888884 4343321111 011 111222322221 0 011222333
Q ss_pred ecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCC
Q 013871 139 FFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMP 218 (434)
Q Consensus 139 ~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~ 218 (434)
....++..+.|++++..++..... .+ ..-+.. ..+... ............+..+..+.|.++|+.+++.....+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~gk~~~~~~~~~~ 238 (620)
T COG1506 165 LGNLDVVSFATDGDGRLVASIRLD-DD--ADPWVT--NLYVLI-EGNGELESLTPGEGSISKLAFDADGKSIALLGTESD 238 (620)
T ss_pred CCCCceeeeeeCCCCceeEEeeec-cc--cCCceE--eeEEEe-cCCCceEEEcCCCceeeeeeeCCCCCeeEEeccCCc
Confidence 445566677777777765544322 11 111111 111111 122122223334566889999999998877543333
Q ss_pred C------eEEEEecccceeEE-e--CC--cCeeEEEEC-CCCCeEEEEecCCCCCeEEEEEccCC-EEEEEeeCCCceEE
Q 013871 219 A------SATIFNKKCRPILE-L--GS--GPYNTVRWN-PKGKFLCLAGFGNLPGDMAFWDYVDG-KQLGTTRAECSVTS 285 (434)
Q Consensus 219 ~------~v~l~d~~~~~~~~-~--~~--~~~~~i~~S-P~g~~l~~~~~~~~~g~i~iwd~~~~-~~i~~~~~~~~~~~ 285 (434)
. .+.+++.+...+.. + .. ...-.+.+. +++..+.++..+ .|...+...... ..............
T Consensus 239 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~l~~~~~~~~~~~~~~~~~~~v~ 316 (620)
T COG1506 239 RGLAEGDFILLLDGELGEVDGDLSSGDDTRGAWAVEGGLDGDGLLFIATDG--GGSSPLFRVDDLGGGVEGLSGDDGGVP 316 (620)
T ss_pred cCccccceEEEEeccccccceeeccCCcccCcHHhccccCCCcEEEEEecC--CCceEEEEEeccCCceeeecCCCceEE
Confidence 1 34455521111111 1 01 000111222 222333333321 356776665532 12222233323344
Q ss_pred EECCCCCEEEEEEcCCceeeCCcEEEEee
Q 013871 286 EWSPDGRYFMTATTAPRLQIDNGIKIFHH 314 (434)
Q Consensus 286 ~wspdg~~l~tas~~prl~~D~~i~iw~~ 314 (434)
.|+.+|+.+++.-++|.. -..+.+++.
T Consensus 317 ~f~~~~~~~~~~~s~~~~--p~~i~~~~~ 343 (620)
T COG1506 317 GFDVDGRKLALAYSSPTE--PPEIYLYDR 343 (620)
T ss_pred EEeeCCCEEEEEecCCCC--ccceEEEcC
Confidence 555599999988876542 345666664
No 378
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=93.73 E-value=1.8 Score=45.06 Aligned_cols=100 Identities=18% Similarity=0.269 Sum_probs=62.3
Q ss_pred CCCeEEEEECcCCCEEEEEE---ccCCCeEEEEecccceeEEe-----CCcCeeEEEECCCCCeEEEEecCCCCCeEEEE
Q 013871 195 EGPVHDVQWSYSGSEFAVVY---GFMPASATIFNKKCRPILEL-----GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFW 266 (434)
Q Consensus 195 ~~~i~~v~wspdg~~~av~~---g~~~~~v~l~d~~~~~~~~~-----~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iw 266 (434)
.|--+.+.|-|+|..++.+- +....++.+|.-.+-.--++ .......++|+-....++++. +| .|.+|
T Consensus 246 ~g~e~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~wn~~s~vlav~~-~n---~~~lw 321 (1243)
T COG5290 246 TGMEHQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRVGCDEKAFLENWNLLSTVLAVAE-GN---LLKLW 321 (1243)
T ss_pred ccchhccccccCCceeeeeccCCCCCcceEEEEccCCcccCCccccCCchhhhhhhhhhHHHHHHHHhh-cc---eEEEE
Confidence 45557799999999999764 11222677775443221122 123345577877777666552 33 79999
Q ss_pred EccCCEE--EEEeeCCCceEEEECCCCCEEEEEE
Q 013871 267 DYVDGKQ--LGTTRAECSVTSEWSPDGRYFMTAT 298 (434)
Q Consensus 267 d~~~~~~--i~~~~~~~~~~~~wspdg~~l~tas 298 (434)
-..+..- -.....+.+..+.|+|....-+--+
T Consensus 322 ttkNyhWYLK~e~~ip~~s~vkwhpe~~nTl~f~ 355 (1243)
T COG5290 322 TTKNYHWYLKVERQIPGISYVKWHPEEKNTLLFR 355 (1243)
T ss_pred EccceEEEEEEeecCCCcceeeeccccCcEEEEe
Confidence 9887743 3344556778899999765544433
No 379
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.67 E-value=2 Score=41.90 Aligned_cols=99 Identities=11% Similarity=0.165 Sum_probs=65.4
Q ss_pred CCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeE-------EeCCcCeeEEEECCCCCeEEEEecCCCCCeEEEE
Q 013871 194 KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPIL-------ELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFW 266 (434)
Q Consensus 194 ~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~-------~~~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iw 266 (434)
.+|+|.++.||+|.+.+|| ...+..|.+++..+.... ......+..++|+.. +-+|+... .-|.+|
T Consensus 65 d~G~I~SIkFSlDnkilAV--QR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~----~G~e~y 137 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAV--QRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITD----QGIEFY 137 (657)
T ss_pred CCCceeEEEeccCcceEEE--EecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEec----CCeEEE
Confidence 4789999999999999997 556779999987432211 113445778899877 55555542 237777
Q ss_pred EccCC-EEEEEeeCC--CceEEEECCCCCEEEEEEc
Q 013871 267 DYVDG-KQLGTTRAE--CSVTSEWSPDGRYFMTATT 299 (434)
Q Consensus 267 d~~~~-~~i~~~~~~--~~~~~~wspdg~~l~tas~ 299 (434)
-+... +.++..+.+ ++.-..|.|+-+.++.+++
T Consensus 138 ~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~ 173 (657)
T KOG2377|consen 138 QVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTT 173 (657)
T ss_pred EEchhhhhhhhhhhcccCccEEEEccccceEeeecc
Confidence 66543 233333333 5555899999888776664
No 380
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=93.65 E-value=0.97 Score=46.63 Aligned_cols=95 Identities=18% Similarity=0.381 Sum_probs=63.6
Q ss_pred CEEEEEEccCCCeEEEEecccceeE---Ee-CCcCeeEEEE--CCCCCeEEEEecCCCCCeEEEEEcc---------CCE
Q 013871 208 SEFAVVYGFMPASATIFNKKCRPIL---EL-GSGPYNTVRW--NPKGKFLCLAGFGNLPGDMAFWDYV---------DGK 272 (434)
Q Consensus 208 ~~~av~~g~~~~~v~l~d~~~~~~~---~~-~~~~~~~i~~--SP~g~~l~~~~~~~~~g~i~iwd~~---------~~~ 272 (434)
+.+|++ ......++|||.+...+- .| ..+.|.++.| .|+|+.++..||++ .|.++--. +..
T Consensus 41 ~k~a~V-~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~---~v~l~~Q~R~dy~~~~p~w~ 116 (631)
T PF12234_consen 41 KKIAVV-DSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPH---HVLLYTQLRYDYTNKGPSWA 116 (631)
T ss_pred CcEEEE-ECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCc---EEEEEEccchhhhcCCcccc
Confidence 456665 333459999999754421 23 4678888887 57899999999887 88887432 112
Q ss_pred EE-----EEeeCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEee
Q 013871 273 QL-----GTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH 314 (434)
Q Consensus 273 ~i-----~~~~~~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~ 314 (434)
.+ ..+..|.+.+..|-+||..++.+ +|.+.|++-
T Consensus 117 ~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--------GNqlfv~dk 155 (631)
T PF12234_consen 117 PIRKIDISSHTPHPIGDSIWLKDGTLVVGS--------GNQLFVFDK 155 (631)
T ss_pred eeEEEEeecCCCCCccceeEecCCeEEEEe--------CCEEEEECC
Confidence 22 23344677779999999876654 567777764
No 381
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=93.57 E-value=6.6 Score=36.93 Aligned_cols=96 Identities=17% Similarity=0.345 Sum_probs=67.7
Q ss_pred ccCCCeEEEE---ecccceeEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCE-EEEEeeCC--CceEEE
Q 013871 215 GFMPASATIF---NKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK-QLGTTRAE--CSVTSE 286 (434)
Q Consensus 215 g~~~~~v~l~---d~~~~~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~-~i~~~~~~--~~~~~~ 286 (434)
|...++++.. ......+..+ |.+.+.++.|.|..+.|.++..+ ..+.+||+--++ ......+| .+..+.
T Consensus 171 Gd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d---~~vi~wdigg~~g~~~el~gh~~kV~~l~ 247 (404)
T KOG1409|consen 171 GDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASD---HSVIMWDIGGRKGTAYELQGHNDKVQALS 247 (404)
T ss_pred cccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEecccc---CceEEEeccCCcceeeeeccchhhhhhhh
Confidence 5555655543 3345666666 78899999999999999988855 499999986443 22333333 344466
Q ss_pred ECCCCCEEEEEEcCCceeeCCcEEEEeecCcee
Q 013871 287 WSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLF 319 (434)
Q Consensus 287 wspdg~~l~tas~~prl~~D~~i~iw~~~g~~~ 319 (434)
.-+--+.+.++.. |+.|.+|+++-+..
T Consensus 248 ~~~~t~~l~S~~e------dg~i~~w~mn~~r~ 274 (404)
T KOG1409|consen 248 YAQHTRQLISCGE------DGGIVVWNMNVKRV 274 (404)
T ss_pred hhhhheeeeeccC------CCeEEEEeccceee
Confidence 6666778888888 99999999876543
No 382
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=93.44 E-value=3 Score=32.62 Aligned_cols=98 Identities=13% Similarity=0.200 Sum_probs=51.8
Q ss_pred EECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc
Q 013871 148 NWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK 227 (434)
Q Consensus 148 ~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~ 227 (434)
.+..+|..-|+..+ .|..++.|.++.-+ ..+.....|..++-... .+|+ |+..+++|-+|+..
T Consensus 9 d~d~dg~~eLlvGs--~D~~IRvf~~~e~~------------~Ei~e~~~v~~L~~~~~-~~F~--Y~l~NGTVGvY~~~ 71 (111)
T PF14783_consen 9 DFDGDGENELLVGS--DDFEIRVFKGDEIV------------AEITETDKVTSLCSLGG-GRFA--YALANGTVGVYDRS 71 (111)
T ss_pred ecCCCCcceEEEec--CCcEEEEEeCCcEE------------EEEecccceEEEEEcCC-CEEE--EEecCCEEEEEeCc
Confidence 34556655444443 34445544444333 23333556777766654 5677 68889999999875
Q ss_pred cceeEEeCCcCeeEEEE---CCCCC-eEEEEecCCCCCeEEE
Q 013871 228 CRPILELGSGPYNTVRW---NPKGK-FLCLAGFGNLPGDMAF 265 (434)
Q Consensus 228 ~~~~~~~~~~~~~~i~~---SP~g~-~l~~~~~~~~~g~i~i 265 (434)
...-..-.+..++++.+ +-||. -|++|- .+|.|.+
T Consensus 72 ~RlWRiKSK~~~~~~~~~D~~gdG~~eLI~Gw---snGkve~ 110 (111)
T PF14783_consen 72 QRLWRIKSKNQVTSMAFYDINGDGVPELIVGW---SNGKVEV 110 (111)
T ss_pred ceeeeeccCCCeEEEEEEcCCCCCceEEEEEe---cCCeEEe
Confidence 44332223344555443 33444 344443 3367654
No 383
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=93.35 E-value=6.3 Score=42.47 Aligned_cols=112 Identities=18% Similarity=0.364 Sum_probs=71.2
Q ss_pred CCCCCeEEEEEC---c----CCCEEEEEEccCCCeEEEEec----------------ccceeEEe-----CCcCeeEEEE
Q 013871 193 RKEGPVHDVQWS---Y----SGSEFAVVYGFMPASATIFNK----------------KCRPILEL-----GSGPYNTVRW 244 (434)
Q Consensus 193 ~~~~~i~~v~ws---p----dg~~~av~~g~~~~~v~l~d~----------------~~~~~~~~-----~~~~~~~i~~ 244 (434)
....||..|.|+ . ..+.|+|.+. ..++|+.. ..+++..+ +..+...++|
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~---~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~F 153 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVRTE---TSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAF 153 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEEcC---CEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEe
Confidence 447899999998 2 2357776543 36777761 12334433 4557788999
Q ss_pred CCCC-CeEEEEecCCCCCeEEEEEccCC-----EEE-------EEe-eC---CCce-EEEECCCCCEEEEEEcCCceeeC
Q 013871 245 NPKG-KFLCLAGFGNLPGDMAFWDYVDG-----KQL-------GTT-RA---ECSV-TSEWSPDGRYFMTATTAPRLQID 306 (434)
Q Consensus 245 SP~g-~~l~~~~~~~~~g~i~iwd~~~~-----~~i-------~~~-~~---~~~~-~~~wspdg~~l~tas~~prl~~D 306 (434)
+|.. +.||+.. ..|+..|||+..+ ..+ ..+ .. .... .+.|.++-..|+++. .
T Consensus 154 nP~~~~q~AiVD---~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~-------r 223 (765)
T PF10214_consen 154 NPWDQRQFAIVD---EKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCN-------R 223 (765)
T ss_pred ccCccceEEEEe---ccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEc-------C
Confidence 9955 4788877 6689999999211 011 111 11 1112 389999988888887 5
Q ss_pred CcEEEEeecCc
Q 013871 307 NGIKIFHHNGS 317 (434)
Q Consensus 307 ~~i~iw~~~g~ 317 (434)
..+.++|+.+.
T Consensus 224 ~~l~~~d~~~~ 234 (765)
T PF10214_consen 224 SKLMLIDFESN 234 (765)
T ss_pred CceEEEECCCC
Confidence 67778887654
No 384
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.94 E-value=4.9 Score=41.73 Aligned_cols=50 Identities=12% Similarity=0.310 Sum_probs=39.1
Q ss_pred CcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCC
Q 013871 26 KNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTD 79 (434)
Q Consensus 26 ~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~ 79 (434)
..|+|++ .+|+.+.+..-.+ ...+ .+-||.|+.+++...+++++||+...
T Consensus 64 ~~I~If~-~sG~lL~~~~w~~--~~lI-~mgWs~~eeLI~v~k~g~v~Vy~~~g 113 (829)
T KOG2280|consen 64 PYIRIFN-ISGQLLGRILWKH--GELI-GMGWSDDEELICVQKDGTVHVYGLLG 113 (829)
T ss_pred eeEEEEe-ccccchHHHHhcC--CCee-eecccCCceEEEEeccceEEEeecch
Confidence 3588888 4687777655443 2555 88999999999999999999999854
No 385
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.87 E-value=1.4 Score=43.70 Aligned_cols=127 Identities=11% Similarity=0.207 Sum_probs=73.8
Q ss_pred eEEEEeeCCcceeeeecCCCCCeEEEEECcCCCE--EE---EEEccCCCeEEEEeccccee--------EEe-CCcCeeE
Q 013871 176 KLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSE--FA---VVYGFMPASATIFNKKCRPI--------LEL-GSGPYNT 241 (434)
Q Consensus 176 ~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~--~a---v~~g~~~~~v~l~d~~~~~~--------~~~-~~~~~~~ 241 (434)
.||.+++..+.. .-.-.-+..|.-+.+.|+.+. +. .+-|-.+..|.-||.+.+-. +++ .....+|
T Consensus 357 ~l~klDIE~GKI-VeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc 435 (644)
T KOG2395|consen 357 KLYKLDIERGKI-VEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSC 435 (644)
T ss_pred cceeeeccccee-eeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccccccccce
Confidence 477777766531 111111233666677776542 11 01156677888899863222 122 2334455
Q ss_pred EEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC--CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEee
Q 013871 242 VRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA--ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH 314 (434)
Q Consensus 242 i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~--~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~ 314 (434)
++-.-+| +|++|+ ++|.|++||.-...--..+.+ ..+..+.-+.||.+|+..+ +..+.+-+.
T Consensus 436 ~aTT~sG-~IvvgS---~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-------~tyLlLi~t 499 (644)
T KOG2395|consen 436 FATTESG-YIVVGS---LKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-------KTYLLLIDT 499 (644)
T ss_pred eeecCCc-eEEEee---cCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-------ccEEEEEEE
Confidence 5555554 677787 778999999832222222332 3677799999999987655 677776665
No 386
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=91.88 E-value=14 Score=36.38 Aligned_cols=231 Identities=13% Similarity=0.120 Sum_probs=95.6
Q ss_pred CCcEEEEe--cCCeEEEEeCCC-CCCceeeee-ecC------Cee---EEEEeCCCCCeEEEEecCCCCCCceEEEEEcC
Q 013871 60 DEAVACRM--ATNEIQFFDTTD-FPKGILYRL-RVP------GVA---AFEVSKAPGSHVAVFVPESKGSPASVQIYACG 126 (434)
Q Consensus 60 d~~~la~~--~~~~i~v~~~~~-~~~~~~~~~-~~~------~v~---~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~ 126 (434)
+.++|+.. .++.|+|+|+.. .......+. ..+ ++. .+---|++.-+|.+.-...++.++-+-+++-.
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 45666665 457999999873 333222222 110 111 12223443345555444444666666676665
Q ss_pred CCCCCCceeeeeec---ccceeEEEECCCCCeEEEEEEec-----------ccccCceeecceeEEEEeeCCc-ceeeee
Q 013871 127 KDLQSQPLARRSFF---RCSTVQLNWNRGSTGLLAVAQSD-----------VDKTNQSYYGESKLNYLTTDGT-HEGLVP 191 (434)
Q Consensus 127 ~~~~~~~i~~~~~~---~~~~~~~~ws~~G~~l~~~~~~~-----------~d~~~~~~~g~~~l~~l~~~~~-~~~~v~ 191 (434)
++ ..+...... ..--..+-|+|.-+.++.. +-. .|.... -||. .|+.++.... ..+.+.
T Consensus 166 tf---~v~g~We~~~~~~~~gYDfw~qpr~nvMiSS-eWg~P~~~~~Gf~~~d~~~~-~yG~-~l~vWD~~~r~~~Q~id 239 (461)
T PF05694_consen 166 TF---EVKGRWEKDRGPQPFGYDFWYQPRHNVMISS-EWGAPSMFEKGFNPEDLEAG-KYGH-SLHVWDWSTRKLLQTID 239 (461)
T ss_dssp T-----EEEE--SB-TT------EEEETTTTEEEE--B---HHHHTT---TTTHHHH--S---EEEEEETTTTEEEEEEE
T ss_pred cc---cccceeccCCCCCCCCCCeEEcCCCCEEEEe-ccCChhhcccCCChhHhhcc-cccC-eEEEEECCCCcEeeEEe
Confidence 42 222221111 1122467788876654321 100 011111 2443 4666665443 234455
Q ss_pred cCCCCC-eEEEEEC--cCCCEEEEEEccCCCeEEEEec-c-----cceeEEeC-------------------CcCeeEEE
Q 013871 192 LRKEGP-VHDVQWS--YSGSEFAVVYGFMPASATIFNK-K-----CRPILELG-------------------SGPYNTVR 243 (434)
Q Consensus 192 l~~~~~-i~~v~ws--pdg~~~av~~g~~~~~v~l~d~-~-----~~~~~~~~-------------------~~~~~~i~ 243 (434)
|..++. ...+.|. |+..+=.+ ...-.++|.+|-. + .+.+.++. ..-++.|.
T Consensus 240 Lg~~g~~pLEvRflH~P~~~~gFv-g~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~ 318 (461)
T PF05694_consen 240 LGEEGQMPLEVRFLHDPDANYGFV-GCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDIL 318 (461)
T ss_dssp S-TTEEEEEEEEE-SSTT--EEEE-EEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EE
T ss_pred cCCCCCceEEEEecCCCCccceEE-EEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEE
Confidence 554442 3455555 44443332 2333446665532 1 23333332 13468899
Q ss_pred ECCCCCeEEEEecCCCCCeEEEEEccCC---EEEEEeeCC------------------CceEEEECCCCCEEEEEEc
Q 013871 244 WNPKGKFLCLAGFGNLPGDMAFWDYVDG---KQLGTTRAE------------------CSVTSEWSPDGRYFMTATT 299 (434)
Q Consensus 244 ~SP~g~~l~~~~~~~~~g~i~iwd~~~~---~~i~~~~~~------------------~~~~~~wspdg~~l~tas~ 299 (434)
.|.|.++|.++.+.. |.|+.||+.+- +++....-. ..--++.|-||+.|...++
T Consensus 319 iSlDDrfLYvs~W~~--GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnS 393 (461)
T PF05694_consen 319 ISLDDRFLYVSNWLH--GDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTNS 393 (461)
T ss_dssp E-TTS-EEEEEETTT--TEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE--
T ss_pred EccCCCEEEEEcccC--CcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEee
Confidence 999999999998854 99999999853 555543211 1123889999999988775
No 387
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.57 E-value=2.4 Score=42.14 Aligned_cols=121 Identities=10% Similarity=0.084 Sum_probs=75.0
Q ss_pred CcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCc--------EEEEecCCeEEEEeCCCCCC--ceeeeee-c---C
Q 013871 26 KNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEA--------VACRMATNEIQFFDTTDFPK--GILYRLR-V---P 91 (434)
Q Consensus 26 ~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~--------~la~~~~~~i~v~~~~~~~~--~~~~~~~-~---~ 91 (434)
..|+=.|++.|+.+..+..+. .++.++++||.+ .|+..+++.|.-||+.-.+. ......+ . .
T Consensus 356 ~~l~klDIE~GKIVeEWk~~~----di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~ 431 (644)
T KOG2395|consen 356 DKLYKLDIERGKIVEEWKFED----DINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKN 431 (644)
T ss_pred CcceeeecccceeeeEeeccC----CcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecccccccc
Confidence 456777889999999888763 366788888754 45556788999999753222 1111111 0 1
Q ss_pred CeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEE
Q 013871 92 GVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVA 160 (434)
Q Consensus 92 ~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~ 160 (434)
+..++ ...++.+|++ ++..|.|+||+--. .+.-..+......+..+.-+.+|++|+..+
T Consensus 432 nFsc~--aTT~sG~Ivv-----gS~~GdIRLYdri~---~~AKTAlPgLG~~I~hVdvtadGKwil~Tc 490 (644)
T KOG2395|consen 432 NFSCF--ATTESGYIVV-----GSLKGDIRLYDRIG---RRAKTALPGLGDAIKHVDVTADGKWILATC 490 (644)
T ss_pred cccee--eecCCceEEE-----eecCCcEEeehhhh---hhhhhcccccCCceeeEEeeccCcEEEEec
Confidence 12222 2223445554 35668999999633 333444555666777788888999987654
No 388
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=91.53 E-value=11 Score=34.53 Aligned_cols=74 Identities=14% Similarity=0.061 Sum_probs=48.3
Q ss_pred ceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCc-CCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCC
Q 013871 3 LLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNM-TKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFP 81 (434)
Q Consensus 3 ~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~-~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~ 81 (434)
..|.|-.+|.++-+.+.+ ....|+.+|+.+|+.+........ -.+ .+..-.|.-+..+--++...+||..++.
T Consensus 48 QGL~~~~~g~LyESTG~y---G~S~l~~~d~~tg~~~~~~~l~~~~FgE---Git~~~d~l~qLTWk~~~~f~yd~~tl~ 121 (264)
T PF05096_consen 48 QGLEFLDDGTLYESTGLY---GQSSLRKVDLETGKVLQSVPLPPRYFGE---GITILGDKLYQLTWKEGTGFVYDPNTLK 121 (264)
T ss_dssp EEEEEEETTEEEEEECST---TEEEEEEEETTTSSEEEEEE-TTT--EE---EEEEETTEEEEEESSSSEEEEEETTTTE
T ss_pred ccEEecCCCEEEEeCCCC---CcEEEEEEECCCCcEEEEEECCccccce---eEEEECCEEEEEEecCCeEEEEccccce
Confidence 357777788888777754 346899999999998766544321 012 2333344445555577899999998865
Q ss_pred C
Q 013871 82 K 82 (434)
Q Consensus 82 ~ 82 (434)
.
T Consensus 122 ~ 122 (264)
T PF05096_consen 122 K 122 (264)
T ss_dssp E
T ss_pred E
Confidence 4
No 389
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=91.49 E-value=7.2 Score=35.68 Aligned_cols=79 Identities=15% Similarity=0.214 Sum_probs=49.3
Q ss_pred CCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCCCCceeeee
Q 013871 10 VGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDFPKGILYRL 88 (434)
Q Consensus 10 ~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~~~~~~~~~ 88 (434)
|-=|.+||. ++...+||..+.+.+.+|.... ++| .++ .|++.|..+ +.+.|+++|..++.......+
T Consensus 100 d~l~qLTWk------~~~~f~yd~~tl~~~~~~~y~~---EGW-GLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V 167 (264)
T PF05096_consen 100 DKLYQLTWK------EGTGFVYDPNTLKKIGTFPYPG---EGW-GLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQV 167 (264)
T ss_dssp TEEEEEESS------SSEEEEEETTTTEEEEEEE-SS---S---EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-
T ss_pred CEEEEEEec------CCeEEEEccccceEEEEEecCC---cce-EEE--cCCCEEEEECCccceEEECCcccceEEEEEE
Confidence 334555665 5789999999999999887643 899 777 566666655 567999999988765433333
Q ss_pred e-----cCCeeEEEEeC
Q 013871 89 R-----VPGVAAFEVSK 100 (434)
Q Consensus 89 ~-----~~~v~~~~~sp 100 (434)
. +..+..+++-.
T Consensus 168 ~~~g~pv~~LNELE~i~ 184 (264)
T PF05096_consen 168 TDNGRPVSNLNELEYIN 184 (264)
T ss_dssp EETTEE---EEEEEEET
T ss_pred EECCEECCCcEeEEEEc
Confidence 3 33577777764
No 390
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.08 E-value=1.2 Score=48.02 Aligned_cols=139 Identities=11% Similarity=0.062 Sum_probs=87.9
Q ss_pred cCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccce--e----EEe--------CCcCeeEEEECCCCCeEEEEecC
Q 013871 192 LRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP--I----LEL--------GSGPYNTVRWNPKGKFLCLAGFG 257 (434)
Q Consensus 192 l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~--~----~~~--------~~~~~~~i~~SP~g~~l~~~~~~ 257 (434)
+.++-+|+.+...+|+...+++....+..|..||++.-. . .-| ......++.|+|.=-...+...
T Consensus 97 v~k~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l- 175 (1405)
T KOG3630|consen 97 VEKEIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDL- 175 (1405)
T ss_pred eeccccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhc-
Confidence 344678888888899888888777766688999986211 1 101 1233457889986543222221
Q ss_pred CCCCeEEEEEccCC-EEEEEeeC-CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceeeeeec------cccee
Q 013871 258 NLPGDMAFWDYVDG-KQLGTTRA-ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKKMF------DKLFQ 329 (434)
Q Consensus 258 ~~~g~i~iwd~~~~-~~i~~~~~-~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~~~~~~~------~~~~~ 329 (434)
.++.|.+.-+.-. .....+.- ...+.++|||.|..++.+-. .+++.-|...++.....+. .++.+
T Consensus 176 -~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~n------nGt~vQy~P~leik~~ip~Pp~~e~yrvl~ 248 (1405)
T KOG3630|consen 176 -SDLSLRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRN------NGTEVQYEPSLEIKSEIPEPPVEENYRVLS 248 (1405)
T ss_pred -cccchhhhhhhhhhhhhcccCcccceeeEEeccccceeeEecC------CCeEEEeecccceeecccCCCcCCCcceeE
Confidence 2457777665432 22222222 25667999999999999988 8888889888875444322 34677
Q ss_pred eEEEcCCCC
Q 013871 330 AEWKPVSPD 338 (434)
Q Consensus 330 ~~w~p~~~~ 338 (434)
|.|--.-..
T Consensus 249 v~Wl~t~ef 257 (1405)
T KOG3630|consen 249 VTWLSTQEF 257 (1405)
T ss_pred EEEecceeE
Confidence 888654333
No 391
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=90.99 E-value=1.6 Score=27.02 Aligned_cols=40 Identities=18% Similarity=0.229 Sum_probs=28.3
Q ss_pred CCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC-CceEEEE
Q 013871 246 PKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-CSVTSEW 287 (434)
Q Consensus 246 P~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-~~~~~~w 287 (434)
|+|++|.++..+ .+.|.++|..+++.+..+.-. ....+.+
T Consensus 1 pd~~~lyv~~~~--~~~v~~id~~~~~~~~~i~vg~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSG--SNTVSVIDTATNKVIATIPVGGYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCC--CCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence 688888887654 379999999998877776543 3334444
No 392
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=90.85 E-value=0.1 Score=52.33 Aligned_cols=147 Identities=14% Similarity=0.098 Sum_probs=80.4
Q ss_pred ceEEecCC-CcEEEEEecCCCCCCCcEEEEEcCCC--cE--EEEEeecCcCCCCCCeeeecCCCcEEEEecC-CeEEEEe
Q 013871 3 LLLTCLRV-GLIIQTFQKSSTPQEKNVILWKTETG--EA--VYQLFQKNMTKTTWPSIRFSSDEAVACRMAT-NEIQFFD 76 (434)
Q Consensus 3 ~~l~fSP~-g~~L~t~~~~~~~~d~~v~iWd~~~g--~~--~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~-~~i~v~~ 76 (434)
++++|++- .+.||..- ..-..|..+.|||+.++ .+ -..|... ......+++|-.|.+++.++.. ..++++|
T Consensus 106 t~lAwneLDtn~LAagl-dkhrnds~~~Iwdi~s~ltvPke~~~fs~~--~l~gqns~cwlrd~klvlaGm~sr~~~ifd 182 (783)
T KOG1008|consen 106 TSLAWNELDTNHLAAGL-DKHRNDSSLKIWDINSLLTVPKESPLFSSS--TLDGQNSVCWLRDTKLVLAGMTSRSVHIFD 182 (783)
T ss_pred cccccccccHHHHHhhh-hhhcccCCccceecccccCCCccccccccc--cccCccccccccCcchhhcccccchhhhhh
Confidence 45666663 44555432 11134678999999887 22 1223331 1133446788899998888855 5999999
Q ss_pred CCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeee----cccceeEEEECCC
Q 013871 77 TTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSF----FRCSTVQLNWNRG 152 (434)
Q Consensus 77 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~----~~~~~~~~~ws~~ 152 (434)
+..-. .....+...-+..+.++|-...++|.+. .+.|-+||.+... ..++.+..- .......++|.|.
T Consensus 183 lRqs~-~~~~svnTk~vqG~tVdp~~~nY~cs~~------dg~iAiwD~~rni-enpl~~i~~~~N~~~~~l~~~aycPt 254 (783)
T KOG1008|consen 183 LRQSL-DSVSSVNTKYVQGITVDPFSPNYFCSNS------DGDIAIWDTYRNI-ENPLQIILRNENKKPKQLFALAYCPT 254 (783)
T ss_pred hhhhh-hhhhhhhhhhcccceecCCCCCceeccc------cCceeeccchhhh-ccHHHHHhhCCCCcccceeeEEeccC
Confidence 76311 1122233334566777774445555432 4678899942210 222221111 1123568899997
Q ss_pred CCeEEEEE
Q 013871 153 STGLLAVA 160 (434)
Q Consensus 153 G~~l~~~~ 160 (434)
.+.++...
T Consensus 255 rtglla~l 262 (783)
T KOG1008|consen 255 RTGLLAVL 262 (783)
T ss_pred Ccchhhhh
Confidence 66655443
No 393
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=90.47 E-value=0.69 Score=28.44 Aligned_cols=29 Identities=24% Similarity=0.600 Sum_probs=19.4
Q ss_pred CceEEEECCCCCEEEEEEcCCceeeCCcEEEE
Q 013871 281 CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIF 312 (434)
Q Consensus 281 ~~~~~~wspdg~~l~tas~~prl~~D~~i~iw 312 (434)
......|||||++|+.++.... .+...||
T Consensus 10 ~~~~p~~SpDGk~i~f~s~~~~---~g~~diy 38 (39)
T PF07676_consen 10 DDGSPAWSPDGKYIYFTSNRND---RGSFDIY 38 (39)
T ss_dssp SEEEEEE-TTSSEEEEEEECT-----SSEEEE
T ss_pred cccCEEEecCCCEEEEEecCCC---CCCcCEE
Confidence 3445899999999999987411 1666666
No 394
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=90.28 E-value=7.4 Score=30.44 Aligned_cols=55 Identities=16% Similarity=0.225 Sum_probs=38.3
Q ss_pred EEEEEEccCCCeEEEEecccceeEEe-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccC
Q 013871 209 EFAVVYGFMPASATIFNKKCRPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD 270 (434)
Q Consensus 209 ~~av~~g~~~~~v~l~d~~~~~~~~~-~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~ 270 (434)
+|+ .|+.|..|++|+-. ..+.++ ....+..+.-...+++ +.+- .+|+|-+|+...
T Consensus 17 eLl--vGs~D~~IRvf~~~-e~~~Ei~e~~~v~~L~~~~~~~F-~Y~l---~NGTVGvY~~~~ 72 (111)
T PF14783_consen 17 ELL--VGSDDFEIRVFKGD-EIVAEITETDKVTSLCSLGGGRF-AYAL---ANGTVGVYDRSQ 72 (111)
T ss_pred eEE--EecCCcEEEEEeCC-cEEEEEecccceEEEEEcCCCEE-EEEe---cCCEEEEEeCcc
Confidence 455 38889999999765 445555 5677888887777664 4443 458899987643
No 395
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=90.25 E-value=1.9 Score=38.56 Aligned_cols=66 Identities=12% Similarity=0.188 Sum_probs=46.0
Q ss_pred EEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEe----------------eCCCceEEEECCCCCEEEEEEcCCceee
Q 013871 242 VRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTT----------------RAECSVTSEWSPDGRYFMTATTAPRLQI 305 (434)
Q Consensus 242 i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~----------------~~~~~~~~~wspdg~~l~tas~~prl~~ 305 (434)
+.+..+|++|++.. .+|.+++||+.+++.+... ....+..+..+.+|.-|++-+
T Consensus 16 ~~l~~~~~~Ll~iT---~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls------- 85 (219)
T PF07569_consen 16 SFLECNGSYLLAIT---SSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS------- 85 (219)
T ss_pred EEEEeCCCEEEEEe---CCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-------
Confidence 34556788888777 6689999999998765432 223555688888888877765
Q ss_pred CCcEEEEeecCc
Q 013871 306 DNGIKIFHHNGS 317 (434)
Q Consensus 306 D~~i~iw~~~g~ 317 (434)
++....|+.+=.
T Consensus 86 ng~~y~y~~~L~ 97 (219)
T PF07569_consen 86 NGDSYSYSPDLG 97 (219)
T ss_pred CCCEEEeccccc
Confidence 566677776433
No 396
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=90.25 E-value=1.2 Score=39.84 Aligned_cols=68 Identities=10% Similarity=0.168 Sum_probs=42.0
Q ss_pred EEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEE------eecC-----cCCCCCCeeeecCCCcEEEEecCCeEE
Q 013871 5 LTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQL------FQKN-----MTKTTWPSIRFSSDEAVACRMATNEIQ 73 (434)
Q Consensus 5 l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~------~~~~-----~~~~~~~~~~~S~d~~~la~~~~~~i~ 73 (434)
+.+..+|.||+... .++.+++||+.+++.+..- .... .....+..+..+.+|.-++...++...
T Consensus 16 ~~l~~~~~~Ll~iT-----~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y 90 (219)
T PF07569_consen 16 SFLECNGSYLLAIT-----SSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSY 90 (219)
T ss_pred EEEEeCCCEEEEEe-----CCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEE
Confidence 44667899999888 8899999999998775432 0000 011233344555566655555555555
Q ss_pred EEeC
Q 013871 74 FFDT 77 (434)
Q Consensus 74 v~~~ 77 (434)
.|+.
T Consensus 91 ~y~~ 94 (219)
T PF07569_consen 91 SYSP 94 (219)
T ss_pred Eecc
Confidence 5554
No 397
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=90.01 E-value=9.2 Score=34.70 Aligned_cols=100 Identities=15% Similarity=0.150 Sum_probs=64.1
Q ss_pred CcCCCEEEEEEccCCCeEEEEeccc-ceeEEe-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCC
Q 013871 204 SYSGSEFAVVYGFMPASATIFNKKC-RPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAEC 281 (434)
Q Consensus 204 spdg~~~av~~g~~~~~v~l~d~~~-~~~~~~-~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~ 281 (434)
-+|.+.++++ |+..+++.-.|.+. +.+.+. -...+.+-+.- -|.++++|- ..|.++|.+.++|+++..+....
T Consensus 19 ~~dskT~v~i-gSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v-vgdfVV~GC---y~g~lYfl~~~tGs~~w~f~~~~ 93 (354)
T KOG4649|consen 19 CNDSKTLVVI-GSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV-VGDFVVLGC---YSGGLYFLCVKTGSQIWNFVILE 93 (354)
T ss_pred ecCCceEEEE-ecCCceEEEecCCCCcEEeehhhCceeeeeeEE-ECCEEEEEE---ccCcEEEEEecchhheeeeeehh
Confidence 3455666654 66666666666643 322222 12222211111 478888887 55799999999998888776653
Q ss_pred ce--EEEECCCCCEEEEEEcCCceeeCCcEEEEee
Q 013871 282 SV--TSEWSPDGRYFMTATTAPRLQIDNGIKIFHH 314 (434)
Q Consensus 282 ~~--~~~wspdg~~l~tas~~prl~~D~~i~iw~~ 314 (434)
.+ ...-.+||..|..++. |+.++.-|+
T Consensus 94 ~vk~~a~~d~~~glIycgsh------d~~~yalD~ 122 (354)
T KOG4649|consen 94 TVKVRAQCDFDGGLIYCGSH------DGNFYALDP 122 (354)
T ss_pred hhccceEEcCCCceEEEecC------CCcEEEecc
Confidence 32 2566789999999999 888877776
No 398
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.84 E-value=0.85 Score=48.81 Aligned_cols=69 Identities=10% Similarity=0.119 Sum_probs=50.1
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC-CeEEEEeC
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT-NEIQFFDT 77 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~-~~i~v~~~ 77 (434)
|++++|+-+|++|+.+- .+|.|.+||+..++.++.+.........+-.+.|..++..+.++.. |. +|+.
T Consensus 133 Vtsvafn~dg~~l~~G~-----~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 133 VTSVAFNQDGSLLLAGL-----GDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred ceeeEecCCCceecccc-----CCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 78999999999998766 6899999999999888776654432244446677777776665533 33 5654
No 399
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=89.78 E-value=2.6 Score=44.91 Aligned_cols=76 Identities=17% Similarity=0.160 Sum_probs=53.2
Q ss_pred eEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCC--C--eEEEEeccc--ceeEEe--CCcCeeEEEECCC
Q 013871 176 KLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMP--A--SATIFNKKC--RPILEL--GSGPYNTVRWNPK 247 (434)
Q Consensus 176 ~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~--~--~v~l~d~~~--~~~~~~--~~~~~~~i~~SP~ 247 (434)
.|.+++.+|.....+.+....+|.+.+|||||++++++++... + .|.+-|+.. ..+..+ ....|-.-...++
T Consensus 330 ~L~~~D~dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ve~aaiprwrv~e~ 409 (912)
T TIGR02171 330 NLAYIDYTKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPVENAAIPRWRVLEN 409 (912)
T ss_pred eEEEEecCCCCceEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeecccccccceEecCC
Confidence 5788888887666666777889999999999999998656655 3 577778753 223333 4555555566677
Q ss_pred CCeE
Q 013871 248 GKFL 251 (434)
Q Consensus 248 g~~l 251 (434)
|..+
T Consensus 410 gdt~ 413 (912)
T TIGR02171 410 GDTV 413 (912)
T ss_pred CCeE
Confidence 7643
No 400
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=89.68 E-value=16 Score=33.28 Aligned_cols=71 Identities=8% Similarity=0.117 Sum_probs=46.2
Q ss_pred CcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceeeeee
Q 013871 11 GLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRLR 89 (434)
Q Consensus 11 g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~~ 89 (434)
|.+++... ..+.|.+-++++|+....|..... -.+ ..+-.+|+.++..++ |++.+..|..... .+.+.+
T Consensus 63 gdfVV~GC-----y~g~lYfl~~~tGs~~w~f~~~~~--vk~-~a~~d~~~glIycgshd~~~yalD~~~~~--cVyksk 132 (354)
T KOG4649|consen 63 GDFVVLGC-----YSGGLYFLCVKTGSQIWNFVILET--VKV-RAQCDFDGGLIYCGSHDGNFYALDPKTYG--CVYKSK 132 (354)
T ss_pred CCEEEEEE-----ccCcEEEEEecchhheeeeeehhh--hcc-ceEEcCCCceEEEecCCCcEEEecccccc--eEEecc
Confidence 55555555 457788889999987777766532 333 446677888888874 6688887776543 334444
Q ss_pred cC
Q 013871 90 VP 91 (434)
Q Consensus 90 ~~ 91 (434)
..
T Consensus 133 cg 134 (354)
T KOG4649|consen 133 CG 134 (354)
T ss_pred cC
Confidence 33
No 401
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=89.60 E-value=1.1 Score=27.56 Aligned_cols=31 Identities=23% Similarity=0.589 Sum_probs=19.9
Q ss_pred CcCeeEEEECCCCCeEEEEecCCCCCeEEEE
Q 013871 236 SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFW 266 (434)
Q Consensus 236 ~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iw 266 (434)
.+......|||||+.|+..+..+..|.-.||
T Consensus 8 ~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 8 PGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 3455678999999998887754323555555
No 402
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=88.45 E-value=1.7 Score=27.57 Aligned_cols=31 Identities=19% Similarity=0.352 Sum_probs=24.4
Q ss_pred cCeeEEEECCCC---CeEEEEecCCCCCeEEEEEccC
Q 013871 237 GPYNTVRWNPKG---KFLCLAGFGNLPGDMAFWDYVD 270 (434)
Q Consensus 237 ~~~~~i~~SP~g---~~l~~~~~~~~~g~i~iwd~~~ 270 (434)
+.+.++.|||.. .+|+.+. ..|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E---~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAE---HQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEc---cCCeEEEEEccc
Confidence 457889999854 4888876 557999999984
No 403
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.42 E-value=31 Score=36.18 Aligned_cols=170 Identities=14% Similarity=0.156 Sum_probs=81.3
Q ss_pred eEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeec--C-CC
Q 013871 119 SVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL--R-KE 195 (434)
Q Consensus 119 ~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l--~-~~ 195 (434)
.|+||++. ++.+......+.+.+.|.|+.+.+.|++. .+.+ ++..+..|........ + ..
T Consensus 65 ~I~If~~s----G~lL~~~~w~~~~lI~mgWs~~eeLI~v~----k~g~---------v~Vy~~~ge~ie~~svg~e~~~ 127 (829)
T KOG2280|consen 65 YIRIFNIS----GQLLGRILWKHGELIGMGWSDDEELICVQ----KDGT---------VHVYGLLGEFIESNSVGFESQM 127 (829)
T ss_pred eEEEEecc----ccchHHHHhcCCCeeeecccCCceEEEEe----ccce---------EEEeecchhhhccccccccccc
Confidence 57888875 57777777777789999999988766553 1111 2333333332221111 1 13
Q ss_pred CCeEEEEECcCCCEEEEEEccCCCeEEEE-ecccceeEEeCCcCeeE---EEE--CCCC-CeEEEEecCCCCC-eEEEEE
Q 013871 196 GPVHDVQWSYSGSEFAVVYGFMPASATIF-NKKCRPILELGSGPYNT---VRW--NPKG-KFLCLAGFGNLPG-DMAFWD 267 (434)
Q Consensus 196 ~~i~~v~wspdg~~~av~~g~~~~~v~l~-d~~~~~~~~~~~~~~~~---i~~--SP~g-~~l~~~~~~~~~g-~i~iwd 267 (434)
..|..+.+..+| +++.+.+ +++.+- +.....+..+..-|.+. .+| .+++ ...++.+-+-..| .+.--+
T Consensus 128 ~~I~ec~~f~~G--Vavlt~~--g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~ 203 (829)
T KOG2280|consen 128 SDIVECRFFHNG--VAVLTVS--GQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVE 203 (829)
T ss_pred CceeEEEEecCc--eEEEecC--CcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhccccee
Confidence 456666666666 4443443 344443 33332333332222221 222 2222 2111111110000 111111
Q ss_pred ccCCEEEEEeeC-CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec
Q 013871 268 YVDGKQLGTTRA-ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN 315 (434)
Q Consensus 268 ~~~~~~i~~~~~-~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~ 315 (434)
..+......... ..+..+..||.+++|+--+. +|.|.+-..+
T Consensus 204 ~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~------~G~i~~vs~D 246 (829)
T KOG2280|consen 204 ESRVQLHALSWPNSSVVKISVSPNRRFLALYTE------TGKIWVVSID 246 (829)
T ss_pred cccccccccCCCCceEEEEEEcCCcceEEEEec------CCcEEEEecc
Confidence 111111111111 23344999999999999988 7777776654
No 404
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=88.37 E-value=8.3 Score=37.83 Aligned_cols=146 Identities=10% Similarity=0.104 Sum_probs=65.7
Q ss_pred EEecCCCcEEEEEe--cC---C---C-------CCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecC--CCcEEEE-
Q 013871 5 LTCLRVGLIIQTFQ--KS---S---T-------PQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSS--DEAVACR- 66 (434)
Q Consensus 5 l~fSP~g~~L~t~~--~~---~---~-------~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~--d~~~la~- 66 (434)
+.+-|.-+.++|.+ .+ . . .....|.+||+.+.+.++++...... .....++|.. +..+-.+
T Consensus 186 fw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g-~~pLEvRflH~P~~~~gFvg 264 (461)
T PF05694_consen 186 FWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEG-QMPLEVRFLHDPDANYGFVG 264 (461)
T ss_dssp EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTE-EEEEEEEE-SSTT--EEEEE
T ss_pred eEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCC-CceEEEEecCCCCccceEEE
Confidence 45667777787744 10 0 0 12368999999999999988775421 1222566655 4444333
Q ss_pred -ecCCeE-EEEeCCCCC--Cceeeeee-------------------cCCeeEEEEeCCCCCeE--EEEecCCCCCCceEE
Q 013871 67 -MATNEI-QFFDTTDFP--KGILYRLR-------------------VPGVAAFEVSKAPGSHV--AVFVPESKGSPASVQ 121 (434)
Q Consensus 67 -~~~~~i-~v~~~~~~~--~~~~~~~~-------------------~~~v~~~~~sp~~~~~i--a~~~~~~~~~~~~v~ 121 (434)
+...+| ++|...+.. ...+..+. ..-|++|.+|.| +.++ +.| ..+.|+
T Consensus 265 ~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlD-DrfLYvs~W------~~Gdvr 337 (461)
T PF05694_consen 265 CALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLD-DRFLYVSNW------LHGDVR 337 (461)
T ss_dssp EE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TT-S-EEEEEET------TTTEEE
T ss_pred EeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccC-CCEEEEEcc------cCCcEE
Confidence 334444 455533321 11112221 023688999998 5443 333 236899
Q ss_pred EEEcCCCCCCCceeeeeecc------------------cceeEEEECCCCCeEEEEE
Q 013871 122 IYACGKDLQSQPLARRSFFR------------------CSTVQLNWNRGSTGLLAVA 160 (434)
Q Consensus 122 i~~~~~~~~~~~i~~~~~~~------------------~~~~~~~ws~~G~~l~~~~ 160 (434)
.|++... ..+...-+.+- ...-.+..|-||++|.+..
T Consensus 338 qYDISDP--~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 338 QYDISDP--FNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp EEE-SST--TS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred EEecCCC--CCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 9999764 22222221111 1123466788999987754
No 405
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=87.60 E-value=3.6 Score=25.40 Aligned_cols=33 Identities=12% Similarity=0.060 Sum_probs=25.9
Q ss_pred CCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeec
Q 013871 9 RVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQK 45 (434)
Q Consensus 9 P~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~ 45 (434)
|+|++|.+... .+++|.++|+.+++.+.++...
T Consensus 1 pd~~~lyv~~~----~~~~v~~id~~~~~~~~~i~vg 33 (42)
T TIGR02276 1 PDGTKLYVTNS----GSNTVSVIDTATNKVIATIPVG 33 (42)
T ss_pred CCCCEEEEEeC----CCCEEEEEECCCCeEEEEEECC
Confidence 78898887662 4678999999999888877653
No 406
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=87.57 E-value=2.3 Score=37.65 Aligned_cols=86 Identities=15% Similarity=0.196 Sum_probs=49.4
Q ss_pred ccCCCeEEEEecccc-ee---EEeCCcCeeE-EEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceEEEECC
Q 013871 215 GFMPASATIFNKKCR-PI---LELGSGPYNT-VRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSP 289 (434)
Q Consensus 215 g~~~~~v~l~d~~~~-~~---~~~~~~~~~~-i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~~~wsp 289 (434)
|..++.|++|+.... .+ .......+.+ |.---++.+.++++ .+|.|+.|+++-.+.+.....|.- -
T Consensus 76 G~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~---~dg~ir~~n~~p~k~~g~~g~h~~------~ 146 (238)
T KOG2444|consen 76 GTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGA---QDGRIRACNIKPNKVLGYVGQHNF------E 146 (238)
T ss_pred ecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEec---cCCceeeeccccCceeeeeccccC------C
Confidence 777888888876411 11 1112222222 22223444666666 557999999998887776665542 3
Q ss_pred CCCEEEEEEcCCceeeCCcEEEEeec
Q 013871 290 DGRYFMTATTAPRLQIDNGIKIFHHN 315 (434)
Q Consensus 290 dg~~l~tas~~prl~~D~~i~iw~~~ 315 (434)
++.++++.++ |..+++|+.+
T Consensus 147 ~~e~~ivv~s------d~~i~~a~~S 166 (238)
T KOG2444|consen 147 SGEELIVVGS------DEFLKIADTS 166 (238)
T ss_pred CcceeEEecC------CceEEeeccc
Confidence 4455555555 6666666543
No 407
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=87.37 E-value=2.4 Score=44.84 Aligned_cols=69 Identities=20% Similarity=0.340 Sum_probs=46.1
Q ss_pred cCeeEEEECCCCCeEEEEecCCCCCeEEEEEcc----------CCE--EEEE-e-------e-CC--CceEEEECCC---
Q 013871 237 GPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV----------DGK--QLGT-T-------R-AE--CSVTSEWSPD--- 290 (434)
Q Consensus 237 ~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~----------~~~--~i~~-~-------~-~~--~~~~~~wspd--- 290 (434)
..|..|..||+|++|++.|..+ |.|..+- .++ .... + . .+ .+..+.|+|.
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~----v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~ 160 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRG----VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSES 160 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCc----EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCC
Confidence 3567899999999999998432 4443331 111 1111 1 0 11 3334999998
Q ss_pred CCEEEEEEcCCceeeCCcEEEEeec
Q 013871 291 GRYFMTATTAPRLQIDNGIKIFHHN 315 (434)
Q Consensus 291 g~~l~tas~~prl~~D~~i~iw~~~ 315 (434)
+.+|++-++ ||.+|+||+.
T Consensus 161 ~~~l~vLts------dn~lR~y~~~ 179 (717)
T PF10168_consen 161 DSHLVVLTS------DNTLRLYDIS 179 (717)
T ss_pred CCeEEEEec------CCEEEEEecC
Confidence 489999998 9999999995
No 408
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=87.35 E-value=14 Score=39.36 Aligned_cols=33 Identities=24% Similarity=0.415 Sum_probs=24.7
Q ss_pred CcCeeEEEECCCC---CeEEEEecCCCCCeEEEEEccCC
Q 013871 236 SGPYNTVRWNPKG---KFLCLAGFGNLPGDMAFWDYVDG 271 (434)
Q Consensus 236 ~~~~~~i~~SP~g---~~l~~~~~~~~~g~i~iwd~~~~ 271 (434)
...+..+.|+|.+ .+|++-..| +.+++||+.+.
T Consensus 146 ~~~i~qv~WhP~s~~~~~l~vLtsd---n~lR~y~~~~~ 181 (717)
T PF10168_consen 146 SLEIKQVRWHPWSESDSHLVVLTSD---NTLRLYDISDP 181 (717)
T ss_pred CceEEEEEEcCCCCCCCeEEEEecC---CEEEEEecCCC
Confidence 4456789999974 677777744 49999998753
No 409
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=86.91 E-value=28 Score=32.82 Aligned_cols=93 Identities=18% Similarity=0.373 Sum_probs=49.0
Q ss_pred CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccC--CEEEEEeeCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEE
Q 013871 235 GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD--GKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIF 312 (434)
Q Consensus 235 ~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~--~~~i~~~~~~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw 312 (434)
..+.++.+.-++||++++++..|+ -+.-||--. .+.........+..+.|+||+...+++ . .+.|+.=
T Consensus 143 ~~gs~~~~~r~~dG~~vavs~~G~---~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~------Gg~~~~s 212 (302)
T PF14870_consen 143 TSGSINDITRSSDGRYVAVSSRGN---FYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-R------GGQIQFS 212 (302)
T ss_dssp ----EEEEEE-TTS-EEEEETTSS---EEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-T------TTEEEEE
T ss_pred CcceeEeEEECCCCcEEEEECccc---EEEEecCCCccceEEccCccceehhceecCCCCEEEEe-C------CcEEEEc
Confidence 456788899999999999986554 444576432 344444444466679999999887765 4 6666666
Q ss_pred ee--cCceeeeeec------ccceeeEEEcCCC
Q 013871 313 HH--NGSLFFKKMF------DKLFQAEWKPVSP 337 (434)
Q Consensus 313 ~~--~g~~~~~~~~------~~~~~~~w~p~~~ 337 (434)
+. ++....+... -.+..++|+|...
T Consensus 213 ~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~ 245 (302)
T PF14870_consen 213 DDPDDGETWSEPIIPIKTNGYGILDLAYRPPNE 245 (302)
T ss_dssp E-TTEEEEE---B-TTSS--S-EEEEEESSSS-
T ss_pred cCCCCccccccccCCcccCceeeEEEEecCCCC
Confidence 62 2222222111 2378889998643
No 410
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=86.79 E-value=11 Score=28.23 Aligned_cols=41 Identities=17% Similarity=0.152 Sum_probs=30.1
Q ss_pred CCCeEEEEEccCCEEEEEeeC-CCceEEEECCCCCEEEEEEc
Q 013871 259 LPGDMAFWDYVDGKQLGTTRA-ECSVTSEWSPDGRYFMTATT 299 (434)
Q Consensus 259 ~~g~i~iwd~~~~~~i~~~~~-~~~~~~~wspdg~~l~tas~ 299 (434)
..|.+.-||..+++......+ .....++.|||+.+|+.+-+
T Consensus 35 ~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et 76 (89)
T PF03088_consen 35 PTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAET 76 (89)
T ss_dssp --EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEG
T ss_pred CCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEec
Confidence 358899999999875444443 35667999999999999876
No 411
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=86.70 E-value=0.089 Score=51.24 Aligned_cols=133 Identities=19% Similarity=0.270 Sum_probs=92.1
Q ss_pred EEEECcCCCEEEEEEccCCCeEEEEecccceeEEe-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEE-EEEe
Q 013871 200 DVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQ-LGTT 277 (434)
Q Consensus 200 ~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~~-~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~-i~~~ 277 (434)
...|-|.+..+++ +.-+..+..||-.++.+... .++....++|.-+|..+++... ..+-+++||+++... -...
T Consensus 39 ~~~w~~e~~nlav--aca~tiv~~YD~agq~~le~n~tg~aldm~wDkegdvlavlAe--k~~piylwd~n~eytqqLE~ 114 (615)
T KOG2247|consen 39 IHRWRPEGHNLAV--ACANTIVIYYDKAGQVILELNPTGKALDMAWDKEGDVLAVLAE--KTGPIYLWDVNSEYTQQLES 114 (615)
T ss_pred eeeEecCCCceeh--hhhhhHHHhhhhhcceecccCCchhHhhhhhccccchhhhhhh--cCCCeeechhhhhhHHHHhc
Confidence 5778898888876 44455788899887776665 4566677899999987666543 347899999986421 1111
Q ss_pred eC-CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc--ee-eeeecccceeeEEEcCCCCCCCC
Q 013871 278 RA-ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS--LF-FKKMFDKLFQAEWKPVSPDKFGD 342 (434)
Q Consensus 278 ~~-~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~--~~-~~~~~~~~~~~~w~p~~~~~~~~ 342 (434)
.+ +.-..+.|++.+..++.+.. .+.+.|++..-. .. .-.+..+.-|.+|.+.+.-++-+
T Consensus 115 gg~~s~sll~wsKg~~el~ig~~------~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~d 177 (615)
T KOG2247|consen 115 GGTSSKSLLAWSKGTPELVIGNN------AGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILCD 177 (615)
T ss_pred cCcchHHHHhhccCCcccccccc------ccceEEEeccchhhhhhhcccccceeEEEecccceeeecC
Confidence 12 12223899999999999976 899999986332 22 22366788999999987665554
No 412
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=86.48 E-value=4.7 Score=34.54 Aligned_cols=31 Identities=23% Similarity=0.561 Sum_probs=22.5
Q ss_pred CceEEEECCCC------CEEEEEEcCCceeeCCcEEEEeecCc
Q 013871 281 CSVTSEWSPDG------RYFMTATTAPRLQIDNGIKIFHHNGS 317 (434)
Q Consensus 281 ~~~~~~wspdg------~~l~tas~~prl~~D~~i~iw~~~g~ 317 (434)
.+..++|||-| ..|++.+. ++.+.||.-.+.
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs------~~~l~l~~~~~~ 123 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTS------NGRLSLYGPPGN 123 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcC------CCeEEEEecCCC
Confidence 44559999953 35666666 999999987654
No 413
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=86.25 E-value=0.11 Score=50.66 Aligned_cols=136 Identities=12% Similarity=0.242 Sum_probs=86.7
Q ss_pred eeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEE
Q 013871 144 TVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATI 223 (434)
Q Consensus 144 ~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l 223 (434)
.....|-+.|..+++.+ .+ +...+|.. ..+....+...+..-+++|.-+|..++++. ...+.+.+
T Consensus 37 pi~~~w~~e~~nlavac---a~-tiv~~YD~----------agq~~le~n~tg~aldm~wDkegdvlavlA-ek~~piyl 101 (615)
T KOG2247|consen 37 PIIHRWRPEGHNLAVAC---AN-TIVIYYDK----------AGQVILELNPTGKALDMAWDKEGDVLAVLA-EKTGPIYL 101 (615)
T ss_pred cceeeEecCCCceehhh---hh-hHHHhhhh----------hcceecccCCchhHhhhhhccccchhhhhh-hcCCCeee
Confidence 34677888877765532 11 11122211 112222233356777899999999999874 44569999
Q ss_pred EecccceeEEeC---CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEE
Q 013871 224 FNKKCRPILELG---SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTA 297 (434)
Q Consensus 224 ~d~~~~~~~~~~---~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~ta 297 (434)
||+..+-..++. ...-.-+.||+-+..++.+. ..|++.|++..+.+.+-....| ..+.++|.+.++.+...
T Consensus 102 wd~n~eytqqLE~gg~~s~sll~wsKg~~el~ig~---~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~d 177 (615)
T KOG2247|consen 102 WDVNSEYTQQLESGGTSSKSLLAWSKGTPELVIGN---NAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILCD 177 (615)
T ss_pred chhhhhhHHHHhccCcchHHHHhhccCCccccccc---cccceEEEeccchhhhhhhcccccceeEEEecccceeeecC
Confidence 999765544442 22223378999999999885 7789999998766554444322 67779999987665543
No 414
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=86.17 E-value=14 Score=35.38 Aligned_cols=99 Identities=11% Similarity=0.194 Sum_probs=52.8
Q ss_pred eEEEEECcCCCEEEEEEccCCCeEEEEecccce---eEEe------CCcCeeEEEECCC----CCeEEEEecC---C--C
Q 013871 198 VHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP---ILEL------GSGPYNTVRWNPK----GKFLCLAGFG---N--L 259 (434)
Q Consensus 198 i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~---~~~~------~~~~~~~i~~SP~----g~~l~~~~~~---~--~ 259 (434)
-.+|+|.|||+.|+ ....++|++++..+.. +..+ .......++++|+ +.+.+..... . .
T Consensus 4 P~~~a~~pdG~l~v---~e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 4 PRSMAFLPDGRLLV---AERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp EEEEEEETTSCEEE---EETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred ceEEEEeCCCcEEE---EeCCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 36899999997766 3458899999854332 2222 3455678999994 4433333211 0 1
Q ss_pred CCeEEEEEccCC-------E-EEEEee-----CCCceEEEECCCCCEEEEEEc
Q 013871 260 PGDMAFWDYVDG-------K-QLGTTR-----AECSVTSEWSPDGRYFMTATT 299 (434)
Q Consensus 260 ~g~i~iwd~~~~-------~-~i~~~~-----~~~~~~~~wspdg~~l~tas~ 299 (434)
...|.-|..... + ++.... .|....+.|.|||..+++.+.
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~ 133 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGD 133 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCC
Confidence 113443444332 2 222222 345566999999966666554
No 415
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=85.48 E-value=19 Score=39.50 Aligned_cols=59 Identities=19% Similarity=0.307 Sum_probs=43.6
Q ss_pred CCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeEEe------CCcCeeEEEECCCCCeEEEEe
Q 013871 195 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL------GSGPYNTVRWNPKGKFLCLAG 255 (434)
Q Consensus 195 ~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~~------~~~~~~~i~~SP~g~~l~~~~ 255 (434)
.....+++|+|.|+++++ |...+++.=|--..+....+ ....+.+|.|--.-.++++-+
T Consensus 198 t~~~Tav~WSprGKQl~i--G~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy~ 262 (1405)
T KOG3630|consen 198 TNSQTAVLWSPRGKQLFI--GRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLSTQEFLVVYG 262 (1405)
T ss_pred ccceeeEEeccccceeeE--ecCCCeEEEeecccceeecccCCCcCCCcceeEEEEecceeEEEEec
Confidence 456789999999999996 88888887776555443333 246788999987777777654
No 416
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=85.26 E-value=8.8 Score=37.81 Aligned_cols=82 Identities=13% Similarity=0.222 Sum_probs=56.0
Q ss_pred cCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceEEEEC----CCCC--------------EEEEEE
Q 013871 237 GPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWS----PDGR--------------YFMTAT 298 (434)
Q Consensus 237 ~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~~~ws----pdg~--------------~l~tas 298 (434)
..+.+|..+|+|++.++.. .-|.|.++|+.++..+...++..--.|.|- +..+ .+...-
T Consensus 308 R~~~~i~~sP~~~laA~tD---slGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvI 384 (415)
T PF14655_consen 308 REGESICLSPSGRLAAVTD---SLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVI 384 (415)
T ss_pred ceEEEEEECCCCCEEEEEc---CCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEE
Confidence 4467899999999888864 458999999999988887777543344442 1111 233344
Q ss_pred cCCceeeCCcEEEEee-cCceeeeeec
Q 013871 299 TAPRLQIDNGIKIFHH-NGSLFFKKMF 324 (434)
Q Consensus 299 ~~prl~~D~~i~iw~~-~g~~~~~~~~ 324 (434)
..|| -+.|-||++ +|..+...+.
T Consensus 385 yapr---Rg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 385 YAPR---RGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred Eecc---CCeEEEEecCCCCEEEEEEe
Confidence 5555 688999998 6766665543
No 417
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=84.87 E-value=24 Score=34.27 Aligned_cols=140 Identities=14% Similarity=0.123 Sum_probs=74.2
Q ss_pred CeEEEEECcCCCEEEEEEc---------cCCC-eEEEEec-c--cc--eeEEe--CCcCeeEEEECCCCCeEEEEecCCC
Q 013871 197 PVHDVQWSYSGSEFAVVYG---------FMPA-SATIFNK-K--CR--PILEL--GSGPYNTVRWNPKGKFLCLAGFGNL 259 (434)
Q Consensus 197 ~i~~v~wspdg~~~av~~g---------~~~~-~v~l~d~-~--~~--~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~ 259 (434)
....++|.++|+.+++-.. ...+ +|.+++- . +. ....+ .....+.|++.++| +++ +..
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~--- 89 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATP--- 89 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCC---
Confidence 3457899999987764210 1123 6777643 2 22 22333 23344779999999 444 331
Q ss_pred CCeEEEE-EccC-------CEEE-EEee------CCCceEEEECCCCCEEEEEEcC-------C------ceeeCCcEEE
Q 013871 260 PGDMAFW-DYVD-------GKQL-GTTR------AECSVTSEWSPDGRYFMTATTA-------P------RLQIDNGIKI 311 (434)
Q Consensus 260 ~g~i~iw-d~~~-------~~~i-~~~~------~~~~~~~~wspdg~~l~tas~~-------p------rl~~D~~i~i 311 (434)
..|..+ |.+. .+.+ ..+. +|....+.|.|||...++-+.. | .....+.|.-
T Consensus 90 -~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r 168 (367)
T TIGR02604 90 -PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFR 168 (367)
T ss_pred -CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEE
Confidence 246545 5431 1222 2232 2334569999999877755531 0 0111244555
Q ss_pred EeecCceeeee--ecccceeeEEEcCCCCCCCC
Q 013871 312 FHHNGSLFFKK--MFDKLFQAEWKPVSPDKFGD 342 (434)
Q Consensus 312 w~~~g~~~~~~--~~~~~~~~~w~p~~~~~~~~ 342 (434)
++.+|..+... -...-+.+.|+|.+...+.+
T Consensus 169 ~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~td 201 (367)
T TIGR02604 169 YNPDGGKLRVVAHGFQNPYGHSVDSWGDVFFCD 201 (367)
T ss_pred EecCCCeEEEEecCcCCCccceECCCCCEEEEc
Confidence 55566543332 23345788999877555544
No 418
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=82.78 E-value=0.71 Score=46.64 Aligned_cols=70 Identities=17% Similarity=0.278 Sum_probs=45.6
Q ss_pred eeeecC-CCcEEEEecCCeEEEEeC-CCCCCceeeeeecC-----CeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcC
Q 013871 54 SIRFSS-DEAVACRMATNEIQFFDT-TDFPKGILYRLRVP-----GVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACG 126 (434)
Q Consensus 54 ~~~~S~-d~~~la~~~~~~i~v~~~-~~~~~~~~~~~~~~-----~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~ 126 (434)
.+...| ...|++...++.|-+||. .+.+.....-++.+ .+..++|+|.....+++...++ +.|++|++.
T Consensus 200 G~tVdp~~~nY~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS----~tIrlydi~ 275 (783)
T KOG1008|consen 200 GITVDPFSPNYFCSNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDS----ITIRLYDIC 275 (783)
T ss_pred cceecCCCCCceeccccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCc----ceEEEeccc
Confidence 344566 678999889999999994 33332222222222 4888999998766677665544 477888765
Q ss_pred C
Q 013871 127 K 127 (434)
Q Consensus 127 ~ 127 (434)
.
T Consensus 276 ~ 276 (783)
T KOG1008|consen 276 V 276 (783)
T ss_pred c
Confidence 3
No 419
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=82.71 E-value=67 Score=33.75 Aligned_cols=56 Identities=13% Similarity=0.082 Sum_probs=33.7
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEE
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACR 66 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~ 66 (434)
+..+.|||+|.+++..+... .....+.+.+.. | .+..+ . ..+....|++++..++.
T Consensus 62 ~~~~~~spdg~~~~~~~~~~-~~~~~l~l~~~~-g-~~~~~-~-----~~v~~~~~~~~g~~~~~ 117 (620)
T COG1506 62 VSELRWSPDGSVLAFVSTDG-GRVAQLYLVDVG-G-LITKT-A-----FGVSDARWSPDGDRIAF 117 (620)
T ss_pred ccccccCCCCCEEEEEeccC-CCcceEEEEecC-C-ceeee-e-----cccccceeCCCCCeEEE
Confidence 45678999999999877221 112344454544 3 11111 1 33336789999998887
No 420
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=82.69 E-value=36 Score=30.59 Aligned_cols=130 Identities=12% Similarity=0.157 Sum_probs=74.0
Q ss_pred CCCeEEEEECcCCCEEEEEEccCCC----------eEEEEecccceeEEe-CCcCeeEEEECCCCCeEEEEecCCCCCeE
Q 013871 195 EGPVHDVQWSYSGSEFAVVYGFMPA----------SATIFNKKCRPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDM 263 (434)
Q Consensus 195 ~~~i~~v~wspdg~~~av~~g~~~~----------~v~l~d~~~~~~~~~-~~~~~~~i~~SP~g~~l~~~~~~~~~g~i 263 (434)
+...++-..+|+|++|+ |.|.. .++.|-...+.-.-+ .-+--|.++|+-+-+.+..... ++-.|
T Consensus 108 knR~NDgkvdP~Gryy~---GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDs--ln~~V 182 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRYYG---GTMADFGDDLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDS--LNYEV 182 (310)
T ss_pred hcccccCccCCCCceee---eeeccccccccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEcc--CceEE
Confidence 34556677789999876 55532 233332222111111 1234478999988886666542 45677
Q ss_pred EEEE--ccCC-----EEEEEeeCC------CceEEEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceeeee--ecccc
Q 013871 264 AFWD--YVDG-----KQLGTTRAE------CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKK--MFDKL 327 (434)
Q Consensus 264 ~iwd--~~~~-----~~i~~~~~~------~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~-~g~~~~~~--~~~~~ 327 (434)
.-|| ..+| +.+..++.. ..-.++...+|..+++.-. .++|...|. +|+++.+. +.+.+
T Consensus 183 ~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~n------g~~V~~~dp~tGK~L~eiklPt~qi 256 (310)
T KOG4499|consen 183 DAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFN------GGTVQKVDPTTGKILLEIKLPTPQI 256 (310)
T ss_pred eeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEec------CcEEEEECCCCCcEEEEEEcCCCce
Confidence 7787 4444 334333321 1112555667777666655 666666665 68877665 34567
Q ss_pred eeeEEEcC
Q 013871 328 FQAEWKPV 335 (434)
Q Consensus 328 ~~~~w~p~ 335 (434)
.+++|--.
T Consensus 257 tsccFgGk 264 (310)
T KOG4499|consen 257 TSCCFGGK 264 (310)
T ss_pred EEEEecCC
Confidence 77777643
No 421
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=82.62 E-value=39 Score=30.97 Aligned_cols=61 Identities=11% Similarity=0.079 Sum_probs=36.3
Q ss_pred CCcEEEEecCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCC
Q 013871 60 DEAVACRMATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKD 128 (434)
Q Consensus 60 d~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~ 128 (434)
.++.|+.+.++-|.+|+...... ...-.....|..+...|.-+..++. .++.+.+++++..
T Consensus 6 ~~~~L~vGt~~Gl~~~~~~~~~~-~~~i~~~~~I~ql~vl~~~~~llvL-------sd~~l~~~~L~~l 66 (275)
T PF00780_consen 6 WGDRLLVGTEDGLYVYDLSDPSK-PTRILKLSSITQLSVLPELNLLLVL-------SDGQLYVYDLDSL 66 (275)
T ss_pred CCCEEEEEECCCEEEEEecCCcc-ceeEeecceEEEEEEecccCEEEEE-------cCCccEEEEchhh
Confidence 45666666655599999833222 2223333348888888864433332 1267888888764
No 422
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=81.21 E-value=63 Score=32.39 Aligned_cols=61 Identities=11% Similarity=0.141 Sum_probs=33.6
Q ss_pred CCCeEEEEECcCC------CEEEEEEccC--------CCeEEEEeccc--------ceeEE-eC---CcCeeEEEECCCC
Q 013871 195 EGPVHDVQWSYSG------SEFAVVYGFM--------PASATIFNKKC--------RPILE-LG---SGPYNTVRWNPKG 248 (434)
Q Consensus 195 ~~~i~~v~wspdg------~~~av~~g~~--------~~~v~l~d~~~--------~~~~~-~~---~~~~~~i~~SP~g 248 (434)
++....|+++|+- .+|.+.+... ...|..|.+.. ..+.. +. ...-..|.|.|||
T Consensus 78 e~GLlglal~PdF~~~~~n~~lYvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG 157 (454)
T TIGR03606 78 HNGLLGLALHPDFMQEKGNPYVYISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDG 157 (454)
T ss_pred CCceeeEEECCCccccCCCcEEEEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCC
Confidence 5778999999874 3455544221 22454454321 11221 21 1223468999999
Q ss_pred CeEEEEe
Q 013871 249 KFLCLAG 255 (434)
Q Consensus 249 ~~l~~~~ 255 (434)
.++++.|
T Consensus 158 ~LYVs~G 164 (454)
T TIGR03606 158 KIYYTIG 164 (454)
T ss_pred cEEEEEC
Confidence 8666554
No 423
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=80.86 E-value=51 Score=31.16 Aligned_cols=67 Identities=7% Similarity=0.063 Sum_probs=39.9
Q ss_pred CCeEEEEECcCCCEEEEEEccCCCeEEEE--ecccceeEEe----CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEcc
Q 013871 196 GPVHDVQWSYSGSEFAVVYGFMPASATIF--NKKCRPILEL----GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV 269 (434)
Q Consensus 196 ~~i~~v~wspdg~~~av~~g~~~~~v~l~--d~~~~~~~~~----~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~ 269 (434)
..+.++... ++++++ |+.-..+.++ +.....+..+ ....+.++.|-++++.++.+. .+|++.++...
T Consensus 130 ~~i~sl~~~--~~~I~v--gD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D---~~gnl~~l~~~ 202 (321)
T PF03178_consen 130 FYITSLSVF--KNYILV--GDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGD---KDGNLFVLRYN 202 (321)
T ss_dssp SSEEEEEEE--TTEEEE--EESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEE---TTSEEEEEEE-
T ss_pred EEEEEEecc--ccEEEE--EEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEc---CCCeEEEEEEC
Confidence 355566554 455664 6655666665 5444433333 445577888887777777676 56899998765
No 424
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=80.69 E-value=34 Score=34.67 Aligned_cols=76 Identities=14% Similarity=0.152 Sum_probs=43.9
Q ss_pred CCCeEEEEecccceeEEeCCcCee--EEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCc-----eEEEECC
Q 013871 217 MPASATIFNKKCRPILELGSGPYN--TVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECS-----VTSEWSP 289 (434)
Q Consensus 217 ~~~~v~l~d~~~~~~~~~~~~~~~--~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~-----~~~~wsp 289 (434)
......++|.++..+..+...... .+..-++|.+++..+ ..+..+|.. |+.+........ -.+..-|
T Consensus 126 ~~~~~~~iD~~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~-----~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~ 199 (477)
T PF05935_consen 126 SSSYTYLIDNNGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG-----NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELP 199 (477)
T ss_dssp BEEEEEEEETTS-EEEEE-GGGT--SSEEE-TTS-EEEEEB-----TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-T
T ss_pred CCceEEEECCCccEEEEEccCccccceeeEcCCCCEEEecC-----CceEEEcCC-CCEEEeeecCCcccccccccEECC
Confidence 344778888888877666322222 277889999998765 478888875 555554444321 1288899
Q ss_pred CCCEEEEEE
Q 013871 290 DGRYFMTAT 298 (434)
Q Consensus 290 dg~~l~tas 298 (434)
+|.+|+.+.
T Consensus 200 nGn~L~l~~ 208 (477)
T PF05935_consen 200 NGNLLILAS 208 (477)
T ss_dssp TS-EEEEEE
T ss_pred CCCEEEEEe
Confidence 999999888
No 425
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=80.21 E-value=53 Score=30.92 Aligned_cols=68 Identities=19% Similarity=0.306 Sum_probs=48.7
Q ss_pred CeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCC-------ceEEEECCCCCEEEEEEcCCceeeCCcEE
Q 013871 238 PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAEC-------SVTSEWSPDGRYFMTATTAPRLQIDNGIK 310 (434)
Q Consensus 238 ~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~-------~~~~~wspdg~~l~tas~~prl~~D~~i~ 310 (434)
.+|+|..-++|.+|+++-.- ..|.+.|.++++.+..+.+.. ...++|-.|-+++-.... ++.|.
T Consensus 145 HiNsV~~~~~G~yLiS~R~~---~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~------~~~Is 215 (299)
T PF14269_consen 145 HINSVDKDDDGDYLISSRNT---STIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESND------DGTIS 215 (299)
T ss_pred EeeeeeecCCccEEEEeccc---CEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCC------CCEEE
Confidence 36889989999999887633 489999999999999887762 122555555555433333 77888
Q ss_pred EEee
Q 013871 311 IFHH 314 (434)
Q Consensus 311 iw~~ 314 (434)
|+|=
T Consensus 216 lFDN 219 (299)
T PF14269_consen 216 LFDN 219 (299)
T ss_pred EEcC
Confidence 8875
No 426
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=80.11 E-value=96 Score=33.82 Aligned_cols=109 Identities=10% Similarity=0.192 Sum_probs=66.3
Q ss_pred CeEEEEECcC-CCEEEEEEcc--------CCCeEEEEeccc-ceeEEeC----CcCeeEEEECCCCCeEEEEecCCCCCe
Q 013871 197 PVHDVQWSYS-GSEFAVVYGF--------MPASATIFNKKC-RPILELG----SGPYNTVRWNPKGKFLCLAGFGNLPGD 262 (434)
Q Consensus 197 ~i~~v~wspd-g~~~av~~g~--------~~~~v~l~d~~~-~~~~~~~----~~~~~~i~~SP~g~~l~~~~~~~~~g~ 262 (434)
.|.++.|..| +.+++|-++. ..|.+.+|.... +.+...+ .+.+.++.- =+|++||. .+ ..
T Consensus 776 Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~-fngkllA~--In---~~ 849 (1096)
T KOG1897|consen 776 SIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVE-FNGKLLAG--IN---QS 849 (1096)
T ss_pred eeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhh-hCCeEEEe--cC---cE
Confidence 3455668877 6667664432 224677776533 3333222 344444332 14777654 33 48
Q ss_pred EEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc
Q 013871 263 MAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS 317 (434)
Q Consensus 263 i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~ 317 (434)
|++|+..+.+.+..-..+ .+..+...-.|..+++|.. -+.|.+-.|.+.
T Consensus 850 vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDl------m~Sitll~y~~~ 900 (1096)
T KOG1897|consen 850 VRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDL------MRSITLLQYKGD 900 (1096)
T ss_pred EEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeec------cceEEEEEEecc
Confidence 999999888666554333 4455888888999999988 677777666443
No 427
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=80.05 E-value=54 Score=30.91 Aligned_cols=129 Identities=18% Similarity=0.279 Sum_probs=63.2
Q ss_pred CCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc---cceeEEeCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEE-cc
Q 013871 194 KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK---CRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWD-YV 269 (434)
Q Consensus 194 ~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~---~~~~~~~~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd-~~ 269 (434)
..+.+.++.-++||++++| +..-.-..-||-- -.+........+..+.|+|++.+.+++ .| |.|++=| ..
T Consensus 143 ~~gs~~~~~r~~dG~~vav--s~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~G---g~~~~s~~~~ 216 (302)
T PF14870_consen 143 TSGSINDITRSSDGRYVAV--SSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RG---GQIQFSDDPD 216 (302)
T ss_dssp ----EEEEEE-TTS-EEEE--ETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TT---TEEEEEE-TT
T ss_pred CcceeEeEEECCCCcEEEE--ECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CC---cEEEEccCCC
Confidence 3578899999999998886 3322233445542 222223346778899999999987765 23 5788776 23
Q ss_pred CCEEEEE------eeCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceeeeeec-----ccceeeEEEcC
Q 013871 270 DGKQLGT------TRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKKMF-----DKLFQAEWKPV 335 (434)
Q Consensus 270 ~~~~i~~------~~~~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~~~~~~~-----~~~~~~~w~p~ 335 (434)
+.+.... ..+..+..++|.++++..++++. +++..=.=.|+.-.+.+. ..||.+.|.+.
T Consensus 217 ~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-------G~l~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~ 286 (302)
T PF14870_consen 217 DGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-------GTLLVSTDGGKTWQKDRVGENVPSNLYRIVFVNP 286 (302)
T ss_dssp EEEEE---B-TTSS--S-EEEEEESSSS-EEEEEST-------T-EEEESSTTSS-EE-GGGTTSSS---EEEEEET
T ss_pred CccccccccCCcccCceeeEEEEecCCCCEEEEeCC-------ccEEEeCCCCccceECccccCCCCceEEEEEcCC
Confidence 3332222 12235677999999888887764 333332223443333221 25777777644
No 428
>PF15359 CDV3: Carnitine deficiency-associated protein 3
Probab=78.97 E-value=1.8 Score=34.83 Aligned_cols=16 Identities=44% Similarity=0.831 Sum_probs=12.6
Q ss_pred CCCCCccCCCCcCChh
Q 013871 377 ATKPAAYRPPHAKQAA 392 (434)
Q Consensus 377 ~~~~~~y~pp~~~~~~ 392 (434)
+...+.||||++|++.
T Consensus 83 ~~~~gvY~PP~~R~~~ 98 (129)
T PF15359_consen 83 ATTSGVYRPPAARNTT 98 (129)
T ss_pred CCCCceecCccccccc
Confidence 3455699999999875
No 429
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=78.36 E-value=48 Score=29.35 Aligned_cols=48 Identities=10% Similarity=0.187 Sum_probs=36.8
Q ss_pred CCeEEEEecc---cceeEEe-CCcCeeEEEECCCCCeEEEEecCCCCC---eEEE
Q 013871 218 PASATIFNKK---CRPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPG---DMAF 265 (434)
Q Consensus 218 ~~~v~l~d~~---~~~~~~~-~~~~~~~i~~SP~g~~l~~~~~~~~~g---~i~i 265 (434)
..+|.+|++. +..+..| .-+.+..+.++..|+||++--..+... .+++
T Consensus 37 g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~ 91 (215)
T PF14761_consen 37 GCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRA 91 (215)
T ss_pred CCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEE
Confidence 3489999986 4556666 458899999999999999987666555 4555
No 430
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=77.11 E-value=15 Score=27.43 Aligned_cols=32 Identities=19% Similarity=0.270 Sum_probs=25.5
Q ss_pred cCeeEEEECCCCCeEEEEecCCCCCeEEEEEccC
Q 013871 237 GPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD 270 (434)
Q Consensus 237 ~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~ 270 (434)
..-|.|.++|++++|.+++. ..+.|.+|.+++
T Consensus 54 ~~aNGI~~s~~~k~lyVa~~--~~~~I~vy~~~~ 85 (86)
T PF01731_consen 54 SFANGIAISPDKKYLYVASS--LAHSIHVYKRHK 85 (86)
T ss_pred CCCceEEEcCCCCEEEEEec--cCCeEEEEEecC
Confidence 44588999999999999875 347899998653
No 431
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=76.97 E-value=50 Score=31.15 Aligned_cols=84 Identities=17% Similarity=0.315 Sum_probs=56.9
Q ss_pred CCCeEEEEecCCCCCeEEEEEccCCE--EEEEeeCCCceEEEECCCCCEEEEEEcCCcee-------e-------CCcEE
Q 013871 247 KGKFLCLAGFGNLPGDMAFWDYVDGK--QLGTTRAECSVTSEWSPDGRYFMTATTAPRLQ-------I-------DNGIK 310 (434)
Q Consensus 247 ~g~~l~~~~~~~~~g~i~iwd~~~~~--~i~~~~~~~~~~~~wspdg~~l~tas~~prl~-------~-------D~~i~ 310 (434)
+|++.++-. ..|.+.-+|.++|+ .+..+.+ .+..++|. |++++++.+-||.. + ..++.
T Consensus 212 dgrLwvlds---gtGev~~vD~~~G~~e~Va~vpG-~~rGL~f~--G~llvVgmSk~R~~~~f~glpl~~~l~~~~CGv~ 285 (335)
T TIGR03032 212 QGKLWLLNS---GRGELGYVDPQAGKFQPVAFLPG-FTRGLAFA--GDFAFVGLSKLRESRVFGGLPIEERLDALGCGVA 285 (335)
T ss_pred CCeEEEEEC---CCCEEEEEcCCCCcEEEEEECCC-CCccccee--CCEEEEEeccccCCCCcCCCchhhhhhhhcccEE
Confidence 466555433 34789999988774 4444443 45558888 99999998877721 1 24677
Q ss_pred EEee-cCceeeeeec----ccceeeEEEcCC
Q 013871 311 IFHH-NGSLFFKKMF----DKLFQAEWKPVS 336 (434)
Q Consensus 311 iw~~-~g~~~~~~~~----~~~~~~~w~p~~ 336 (434)
|-|+ +|..++-..+ +|+|+|.--|.-
T Consensus 286 vidl~tG~vv~~l~feg~v~EifdV~vLPg~ 316 (335)
T TIGR03032 286 VIDLNSGDVVHWLRFEGVIEEIYDVAVLPGV 316 (335)
T ss_pred EEECCCCCEEEEEEeCCceeEEEEEEEecCC
Confidence 7887 6776655544 689999988863
No 432
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=76.92 E-value=1.2e+02 Score=33.14 Aligned_cols=227 Identities=13% Similarity=0.103 Sum_probs=112.1
Q ss_pred eecCCC--cEEEEecCCeEEEEeCCCCCCceeeeeec-CCeeEEEEeCCCCCeEEEEec---CCC---C---CCceEEEE
Q 013871 56 RFSSDE--AVACRMATNEIQFFDTTDFPKGILYRLRV-PGVAAFEVSKAPGSHVAVFVP---ESK---G---SPASVQIY 123 (434)
Q Consensus 56 ~~S~d~--~~la~~~~~~i~v~~~~~~~~~~~~~~~~-~~v~~~~~sp~~~~~ia~~~~---~~~---~---~~~~v~i~ 123 (434)
.|+.|. ..++.+..+.+.+..++...+....++.. +..+.+.+.+. ...+++... .+. + .-..++++
T Consensus 677 ~f~s~a~~d~l~~~~~~~l~i~tid~iqkl~irtvpl~~~prrI~~q~~-sl~~~v~s~r~e~~~~~~~ee~~~s~l~vl 755 (1096)
T KOG1897|consen 677 PFNSDAYPDSLASANGGALTIGTIDEIQKLHIRTVPLGESPRRICYQES-SLTFGVLSNRIESSAEYYGEEYEVSFLRVL 755 (1096)
T ss_pred ccccccCCceEEEecCCceEEEEecchhhcceeeecCCCChhheEeccc-ceEEEEEecccccchhhcCCcceEEEEEEe
Confidence 455443 46666777888888887765544444432 23445555542 222222211 001 1 12345666
Q ss_pred EcCCCCCCCceeeeeecc----cceeEEEECCC-CCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCe
Q 013871 124 ACGKDLQSQPLARRSFFR----CSTVQLNWNRG-STGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPV 198 (434)
Q Consensus 124 ~~~~~~~~~~i~~~~~~~----~~~~~~~ws~~-G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i 198 (434)
+-.+ -+.++...|.. ...++..+..| ++++++.+.--.......-.|.--++.+.-.+.-+......-+|.+
T Consensus 756 D~nT---f~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav 832 (1096)
T KOG1897|consen 756 DQNT---FEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAV 832 (1096)
T ss_pred cCCc---eeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccce
Confidence 6544 33333333322 12334456666 6666665433111111111132223333221111111111225666
Q ss_pred EEEEECcCCCEEEEEEccCCCeEEEEecccc-eeEE--eCCcCeeEEEECCCCCeEEEEecCCCCCeEEE--EEccCCEE
Q 013871 199 HDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PILE--LGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAF--WDYVDGKQ 273 (434)
Q Consensus 199 ~~v~wspdg~~~av~~g~~~~~v~l~d~~~~-~~~~--~~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~i--wd~~~~~~ 273 (434)
.++.-- +|+.+|-+ ...+++|+...+ .++. -+..++..+...-.|..+++|. +.+.+.+ |+...+..
T Consensus 833 ~aL~~f-ngkllA~I----n~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgD---lm~Sitll~y~~~eg~f 904 (1096)
T KOG1897|consen 833 YALVEF-NGKLLAGI----NQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGD---LMRSITLLQYKGDEGNF 904 (1096)
T ss_pred eehhhh-CCeEEEec----CcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEee---ccceEEEEEEeccCCce
Confidence 666543 67777743 448999998655 3322 1467788888999999999997 5555555 44444323
Q ss_pred EEE---eeCCCceEEEECCCCCEE
Q 013871 274 LGT---TRAECSVTSEWSPDGRYF 294 (434)
Q Consensus 274 i~~---~~~~~~~~~~wspdg~~l 294 (434)
+-. +...+.+.+++--+..|+
T Consensus 905 ~evArD~~p~Wmtaveil~~d~yl 928 (1096)
T KOG1897|consen 905 EEVARDYNPNWMTAVEILDDDTYL 928 (1096)
T ss_pred EEeehhhCccceeeEEEecCceEE
Confidence 322 222355556665444443
No 433
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=76.36 E-value=12 Score=31.96 Aligned_cols=26 Identities=15% Similarity=0.364 Sum_probs=19.1
Q ss_pred CeeeecCCCcEEEEecCCeEEEEeCCC
Q 013871 53 PSIRFSSDEAVACRMATNEIQFFDTTD 79 (434)
Q Consensus 53 ~~~~~S~d~~~la~~~~~~i~v~~~~~ 79 (434)
.+++||.||++++ +.++.|+|.+...
T Consensus 8 ~~l~WS~Dg~laV-~t~~~v~IL~~~~ 33 (173)
T PF12657_consen 8 NALAWSEDGQLAV-ATGESVHILDPQT 33 (173)
T ss_pred cCeeECCCCCEEE-EcCCeEEEEeccC
Confidence 3799999996554 6667888885443
No 434
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=75.99 E-value=13 Score=37.18 Aligned_cols=69 Identities=28% Similarity=0.491 Sum_probs=42.4
Q ss_pred eeEEEECCCCCeEEEEecCCCCCeEE--E---EEc----cCCEEE--EEe----------eCC-CceEEEECCCC---CE
Q 013871 239 YNTVRWNPKGKFLCLAGFGNLPGDMA--F---WDY----VDGKQL--GTT----------RAE-CSVTSEWSPDG---RY 293 (434)
Q Consensus 239 ~~~i~~SP~g~~l~~~~~~~~~g~i~--i---wd~----~~~~~i--~~~----------~~~-~~~~~~wspdg---~~ 293 (434)
+..+..||.|..++++| .+|-+. + |-. ++++.+ ... ..+ .....+|+|++ .+
T Consensus 106 V~~vl~s~~GS~VaL~G---~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~h 182 (741)
T KOG4460|consen 106 VYQVLLSPTGSHVALIG---IKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPH 182 (741)
T ss_pred EEEEEecCCCceEEEec---CCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCce
Confidence 45677888999888888 444332 2 321 233211 111 111 22338999986 67
Q ss_pred EEEEEcCCceeeCCcEEEEeecC
Q 013871 294 FMTATTAPRLQIDNGIKIFHHNG 316 (434)
Q Consensus 294 l~tas~~prl~~D~~i~iw~~~g 316 (434)
|+.-+. ||.||||+.+.
T Consensus 183 L~iL~s------dnviRiy~lS~ 199 (741)
T KOG4460|consen 183 LVLLTS------DNVIRIYSLSE 199 (741)
T ss_pred EEEEec------CcEEEEEecCC
Confidence 777777 99999999854
No 435
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=75.32 E-value=94 Score=31.17 Aligned_cols=51 Identities=10% Similarity=0.237 Sum_probs=35.8
Q ss_pred CCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceeee-------eecCCeeEEEEeCC
Q 013871 50 TTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYR-------LRVPGVAAFEVSKA 101 (434)
Q Consensus 50 ~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~-------~~~~~v~~~~~sp~ 101 (434)
..| .+.|.|||++|++-- .+.|++++........... ....+...++++|+
T Consensus 31 ~Pw-~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~Pd 89 (454)
T TIGR03606 31 KPW-ALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPD 89 (454)
T ss_pred Cce-EEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCC
Confidence 567 899999999999886 5899999765432111111 12356889999987
No 436
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=75.24 E-value=49 Score=33.23 Aligned_cols=122 Identities=10% Similarity=0.050 Sum_probs=68.9
Q ss_pred CcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCC--------CcEEEEecCCeEEEEeCCCCCCceeeeeecCCeeEEE
Q 013871 26 KNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSD--------EAVACRMATNEIQFFDTTDFPKGILYRLRVPGVAAFE 97 (434)
Q Consensus 26 ~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d--------~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~ 97 (434)
..+.-.|++-|+.+..+..+ ..+ .++|.|+ ++.|+..+++.|.-.|..-.+........-+-+....
T Consensus 490 ~kLykmDIErGkvveeW~~~----ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esKdY~tKn~ 564 (776)
T COG5167 490 DKLYKMDIERGKVVEEWDLK----DDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESKDYKTKNK 564 (776)
T ss_pred ccceeeecccceeeeEeecC----Ccc-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeehhcccccc
Confidence 45666788889998888776 344 5788885 4566666777776666543221111111111122223
Q ss_pred EeCC---CCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEE
Q 013871 98 VSKA---PGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVA 160 (434)
Q Consensus 98 ~sp~---~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~ 160 (434)
||.. ...+||+ .+..|.|++|+--. ...-..+......+..+.-+.+|++|++.+
T Consensus 565 Fss~~tTesGyIa~-----as~kGDirLyDRig---~rAKtalP~lG~aIk~idvta~Gk~ilaTC 622 (776)
T COG5167 565 FSSGMTTESGYIAA-----ASRKGDIRLYDRIG---KRAKTALPGLGDAIKHIDVTANGKHILATC 622 (776)
T ss_pred ccccccccCceEEE-----ecCCCceeeehhhc---chhhhcCcccccceeeeEeecCCcEEEEee
Confidence 3332 1345554 24557899998433 222333344555566677788999987654
No 437
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=75.16 E-value=16 Score=27.21 Aligned_cols=48 Identities=19% Similarity=0.423 Sum_probs=33.3
Q ss_pred CeEEEEEccCCEEEEEeeC-CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec
Q 013871 261 GDMAFWDYVDGKQLGTTRA-ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN 315 (434)
Q Consensus 261 g~i~iwd~~~~~~i~~~~~-~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~ 315 (434)
|.|..||.++.+. ...+ .....+..|||+++|.+++.. .+.|++++..
T Consensus 36 ~~Vvyyd~~~~~~--va~g~~~aNGI~~s~~~k~lyVa~~~-----~~~I~vy~~~ 84 (86)
T PF01731_consen 36 GNVVYYDGKEVKV--VASGFSFANGIAISPDKKYLYVASSL-----AHSIHVYKRH 84 (86)
T ss_pred ceEEEEeCCEeEE--eeccCCCCceEEEcCCCCEEEEEecc-----CCeEEEEEec
Confidence 4677777644322 2222 244568999999999999885 8899998764
No 438
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=75.14 E-value=89 Score=30.79 Aligned_cols=102 Identities=12% Similarity=0.085 Sum_probs=59.4
Q ss_pred eeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccc-----eeEEeC----CcCeeEEEECCCCCeEEEEecCCC
Q 013871 189 LVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-----PILELG----SGPYNTVRWNPKGKFLCLAGFGNL 259 (434)
Q Consensus 189 ~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~-----~~~~~~----~~~~~~i~~SP~g~~l~~~~~~~~ 259 (434)
.+.......+.++.|.+++..+++ + ..+.+..-+-.+. ...... ...+..+.|.+++..+++|.
T Consensus 274 ~~~~~~~~~l~~v~~~~dg~l~l~--g-~~G~l~~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~---- 346 (398)
T PLN00033 274 PHNRASARRIQNMGWRADGGLWLL--T-RGGGLYVSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGG---- 346 (398)
T ss_pred EecCCCccceeeeeEcCCCCEEEE--e-CCceEEEecCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEEC----
Confidence 344444678899999999887764 3 3445444322222 122221 12477899999988887764
Q ss_pred CCeEEEEEccCCEEEEEee-----CCCceEEEECCCCCEEEEEE
Q 013871 260 PGDMAFWDYVDGKQLGTTR-----AECSVTSEWSPDGRYFMTAT 298 (434)
Q Consensus 260 ~g~i~iwd~~~~~~i~~~~-----~~~~~~~~wspdg~~l~tas 298 (434)
.|.+... ...++.-.... ..+...+.|.++++-++++.
T Consensus 347 ~G~v~~s-~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~ 389 (398)
T PLN00033 347 SGILLRS-TDGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLGN 389 (398)
T ss_pred CCcEEEe-CCCCcceeEccccCCCCcceeEEEEcCCCceEEEeC
Confidence 3445554 34443322222 11344588888888888774
No 439
>PRK13684 Ycf48-like protein; Provisional
Probab=74.79 E-value=81 Score=30.18 Aligned_cols=97 Identities=16% Similarity=0.182 Sum_probs=55.4
Q ss_pred CCCeEEEEECcCCCEEEEEEccCCCeEEE-Eecccc---eeEEeCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccC
Q 013871 195 EGPVHDVQWSYSGSEFAVVYGFMPASATI-FNKKCR---PILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD 270 (434)
Q Consensus 195 ~~~i~~v~wspdg~~~av~~g~~~~~v~l-~d~~~~---~~~~~~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~ 270 (434)
.+.++++.+.|++..++ .|. .+.+.. +|-.+. .+.......++.+.+.|+|+.++++. .|.+.+=..+.
T Consensus 172 ~g~~~~i~~~~~g~~v~--~g~-~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~----~G~~~~~s~d~ 244 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVA--VSS-RGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLAR----GGQIRFNDPDD 244 (334)
T ss_pred cceEEEEEECCCCeEEE--EeC-CceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEec----CCEEEEccCCC
Confidence 57889999999886555 344 233332 222222 22222356778899999999887764 34554333444
Q ss_pred CEEEEEeeC------CCceEEEECCCCCEEEEEE
Q 013871 271 GKQLGTTRA------ECSVTSEWSPDGRYFMTAT 298 (434)
Q Consensus 271 ~~~i~~~~~------~~~~~~~wspdg~~l~tas 298 (434)
++.-..... .....+.+.|+++.++++.
T Consensus 245 G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~ 278 (334)
T PRK13684 245 LESWSKPIIPEITNGYGYLDLAYRTPGEIWAGGG 278 (334)
T ss_pred CCccccccCCccccccceeeEEEcCCCCEEEEcC
Confidence 432221111 2345588999888666553
No 440
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=74.60 E-value=14 Score=36.49 Aligned_cols=40 Identities=13% Similarity=-0.035 Sum_probs=32.4
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecC
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKN 46 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~ 46 (434)
+.+|..||+|++.++.. .=+.|.|+|+.++..++-+.+-.
T Consensus 310 ~~~i~~sP~~~laA~tD-----slGRV~LiD~~~~~vvrmWKGYR 349 (415)
T PF14655_consen 310 GESICLSPSGRLAAVTD-----SLGRVLLIDVARGIVVRMWKGYR 349 (415)
T ss_pred EEEEEECCCCCEEEEEc-----CCCcEEEEECCCChhhhhhccCc
Confidence 46789999999888855 44889999999998888776544
No 441
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=74.55 E-value=6.1 Score=40.77 Aligned_cols=37 Identities=16% Similarity=0.294 Sum_probs=29.1
Q ss_pred ceEEecC----CCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEee
Q 013871 3 LLLTCLR----VGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQ 44 (434)
Q Consensus 3 ~~l~fSP----~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~ 44 (434)
..+++++ +..+|+|.+ .|+.|+|||+.+++++.+...
T Consensus 218 ~~~~~~~~~~~~~~~l~tl~-----~D~~LRiW~l~t~~~~~~~~~ 258 (547)
T PF11715_consen 218 ASLAVSSSEINDDTFLFTLS-----RDHTLRIWSLETGQCLATIDL 258 (547)
T ss_dssp EEEEE-----ETTTEEEEEE-----TTSEEEEEETTTTCEEEEEET
T ss_pred ceEEEecceeCCCCEEEEEe-----CCCeEEEEECCCCeEEEEecc
Confidence 3455666 778999999 899999999999999887643
No 442
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=73.48 E-value=1.2e+02 Score=31.62 Aligned_cols=60 Identities=10% Similarity=-0.036 Sum_probs=44.5
Q ss_pred ceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe
Q 013871 3 LLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM 67 (434)
Q Consensus 3 ~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~ 67 (434)
-.++.|||+++|+......+.+--++++-|+.+|+.+..... .....+.|.+|++.|...
T Consensus 132 g~~~~s~D~~~la~s~D~~G~e~y~lr~kdL~tg~~~~d~i~-----~~~~~~~Wa~d~~~lfYt 191 (682)
T COG1770 132 GAASISPDHNLLAYSVDVLGDEQYTLRFKDLATGEELPDEIT-----NTSGSFAWAADGKTLFYT 191 (682)
T ss_pred eeeeeCCCCceEEEEEecccccEEEEEEEecccccccchhhc-----ccccceEEecCCCeEEEE
Confidence 467889999999977755555556899999999987554322 223478999999877665
No 443
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=73.11 E-value=1e+02 Score=30.45 Aligned_cols=91 Identities=8% Similarity=0.099 Sum_probs=54.4
Q ss_pred CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCE-----EEEEeeC----CCceEEEECCCCCEEEEEEcCCceeeC
Q 013871 236 SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK-----QLGTTRA----ECSVTSEWSPDGRYFMTATTAPRLQID 306 (434)
Q Consensus 236 ~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~-----~i~~~~~----~~~~~~~wspdg~~l~tas~~prl~~D 306 (434)
...+..+.|.++|.+++++.. |.+. +....++ ....... ..+..+.+.+|+..++++. +
T Consensus 280 ~~~l~~v~~~~dg~l~l~g~~----G~l~-~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~-------~ 347 (398)
T PLN00033 280 ARRIQNMGWRADGGLWLLTRG----GGLY-VSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGG-------S 347 (398)
T ss_pred ccceeeeeEcCCCCEEEEeCC----ceEE-EecCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEEC-------C
Confidence 456778999999998877643 3443 3333332 2222221 1356688999988776664 5
Q ss_pred CcEEEEeecCceeeeee-----cccceeeEEEcCCCC
Q 013871 307 NGIKIFHHNGSLFFKKM-----FDKLFQAEWKPVSPD 338 (434)
Q Consensus 307 ~~i~iw~~~g~~~~~~~-----~~~~~~~~w~p~~~~ 338 (434)
+.+....-.|+.-.... ..+||.+.|.+....
T Consensus 348 G~v~~s~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g 384 (398)
T PLN00033 348 GILLRSTDGGKSWKRDKGADNIAANLYSVKFFDDKKG 384 (398)
T ss_pred CcEEEeCCCCcceeEccccCCCCcceeEEEEcCCCce
Confidence 55655555555433322 246888888775443
No 444
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=72.34 E-value=37 Score=25.47 Aligned_cols=42 Identities=19% Similarity=0.164 Sum_probs=29.1
Q ss_pred cCCCeEEEEecccceeEEe--CCcCeeEEEECCCCCeEEEEecC
Q 013871 216 FMPASATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGFG 257 (434)
Q Consensus 216 ~~~~~v~l~d~~~~~~~~~--~~~~~~~i~~SP~g~~l~~~~~~ 257 (434)
...|.+..||.+++.+..+ +-..-|.|+.|||+.+|+++-..
T Consensus 34 ~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et~ 77 (89)
T PF03088_consen 34 RPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAETG 77 (89)
T ss_dssp ---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEGG
T ss_pred CCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEecc
Confidence 3456888899988776554 33456899999999999988643
No 445
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=72.27 E-value=69 Score=31.52 Aligned_cols=71 Identities=15% Similarity=0.243 Sum_probs=44.7
Q ss_pred eCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC----------CCceEEEEC-----CCC---CEEE
Q 013871 234 LGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA----------ECSVTSEWS-----PDG---RYFM 295 (434)
Q Consensus 234 ~~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~----------~~~~~~~ws-----pdg---~~l~ 295 (434)
...+++.+++.| |=-++|+|- .+|.+.|.|++.-..|....- ..++.++|+ -|+ -.++
T Consensus 84 ~~~g~vtal~~S-~iGFvaigy---~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 84 AKQGPVTALKNS-DIGFVAIGY---ESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp --S-SEEEEEE--BTSEEEEEE---TTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred ccCCcEeEEecC-CCcEEEEEe---cCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 357888888887 445888776 568999999987777665321 134456665 233 3566
Q ss_pred EEEcCCceeeCCcEEEEee
Q 013871 296 TATTAPRLQIDNGIKIFHH 314 (434)
Q Consensus 296 tas~~prl~~D~~i~iw~~ 314 (434)
+++. .|.+.+|.+
T Consensus 160 vGTn------~G~v~~fkI 172 (395)
T PF08596_consen 160 VGTN------SGNVLTFKI 172 (395)
T ss_dssp EEET------TSEEEEEEE
T ss_pred EEeC------CCCEEEEEE
Confidence 6776 778888876
No 446
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=70.26 E-value=1.4e+02 Score=31.11 Aligned_cols=204 Identities=13% Similarity=0.074 Sum_probs=101.3
Q ss_pred eeeecCCCcEEEEecC---C---eEEEEeCCCCCCceeeeeecCC-eeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcC
Q 013871 54 SIRFSSDEAVACRMAT---N---EIQFFDTTDFPKGILYRLRVPG-VAAFEVSKAPGSHVAVFVPESKGSPASVQIYACG 126 (434)
Q Consensus 54 ~~~~S~d~~~la~~~~---~---~i~v~~~~~~~~~~~~~~~~~~-v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~ 126 (434)
.+.-|||++++|.+.| + +|+|.|+.+... ....+.+ ..++.|++++.... +........|..|.-..+.
T Consensus 133 ~~~~s~D~~~la~s~D~~G~e~y~lr~kdL~tg~~---~~d~i~~~~~~~~Wa~d~~~lf-Yt~~d~~~rp~kv~~h~~g 208 (682)
T COG1770 133 AASISPDHNLLAYSVDVLGDEQYTLRFKDLATGEE---LPDEITNTSGSFAWAADGKTLF-YTRLDENHRPDKVWRHRLG 208 (682)
T ss_pred eeeeCCCCceEEEEEecccccEEEEEEEecccccc---cchhhcccccceEEecCCCeEE-EEEEcCCCCcceEEEEecC
Confidence 4678999999999854 1 788988877432 2222333 56789999843332 2222233466666655554
Q ss_pred CCCCCCceeeeeecccc---eeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcc-eeeeecCC-CCCeEEE
Q 013871 127 KDLQSQPLARRSFFRCS---TVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH-EGLVPLRK-EGPVHDV 201 (434)
Q Consensus 127 ~~~~~~~i~~~~~~~~~---~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~-~~~v~l~~-~~~i~~v 201 (434)
+. ......-+...+ ...+.-+.+..+|++.... . .+..+++++..... ...+-+.. ++--+.+
T Consensus 209 t~---~~~d~lvyeE~d~~f~~~v~~s~s~~yi~i~~~~---~------~tsE~~ll~a~~p~~~p~vv~pr~~g~eY~~ 276 (682)
T COG1770 209 TP---GSSDELVYEEKDDRFFLSVGRSRSEAYIVISLGS---H------ITSEVRLLDADDPEAEPKVVLPRENGVEYSV 276 (682)
T ss_pred CC---CCcceEEEEcCCCcEEEEeeeccCCceEEEEcCC---C------cceeEEEEecCCCCCceEEEEEcCCCcEEee
Confidence 31 011111111111 1223334455565554311 1 12235556543321 11111111 2222222
Q ss_pred EECcCCCEEEEEEccCCCeEEEEeccc----c--eeEEeCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEE
Q 013871 202 QWSYSGSEFAVVYGFMPASATIFNKKC----R--PILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLG 275 (434)
Q Consensus 202 ~wspdg~~~av~~g~~~~~v~l~d~~~----~--~~~~~~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~ 275 (434)
. .-+..|.+.+........|+-... . ....-|...+.--.++-..++|++.-..+.-..|.++|.++++...
T Consensus 277 e--h~~d~f~i~sN~~gknf~l~~ap~~~~~~~w~~~I~h~~~~~l~~~~~f~~~lVl~eR~~glp~v~v~~~~~~~~~~ 354 (682)
T COG1770 277 E--HGGDRFYILSNADGKNFKLVRAPVSADKSNWRELIPHREDVRLEGVDLFADHLVLLERQEGLPRVVVRDRKTGEERG 354 (682)
T ss_pred e--ecCcEEEEEecCCCcceEEEEccCCCChhcCeeeeccCCCceeeeeeeeccEEEEEecccCCceEEEEecCCCceee
Confidence 2 236667665544332444443211 1 1111255555555666677888887665556789999998775544
No 447
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=70.07 E-value=1.1e+02 Score=29.81 Aligned_cols=93 Identities=10% Similarity=0.142 Sum_probs=53.0
Q ss_pred CCCeEEEEeccc-ceeEEeCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC--CC-ceEEEECCCCC
Q 013871 217 MPASATIFNKKC-RPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA--EC-SVTSEWSPDGR 292 (434)
Q Consensus 217 ~~~~v~l~d~~~-~~~~~~~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~--~~-~~~~~wspdg~ 292 (434)
.++.+.-+|.+. +.+-....+....+. ..+..|++++ .+|.+..+|..+++.+..... .. ...... .+.
T Consensus 264 ~~g~l~ald~~tG~~~W~~~~~~~~~~~--~~~~~vy~~~---~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g 336 (394)
T PRK11138 264 YNGNLVALDLRSGQIVWKREYGSVNDFA--VDGGRIYLVD---QNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNG 336 (394)
T ss_pred cCCeEEEEECCCCCEEEeecCCCccCcE--EECCEEEEEc---CCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECC
Confidence 467888888753 333333222111222 2355566665 457999999999987765432 11 111111 245
Q ss_pred EEEEEEcCCceeeCCcEEEEee-cCceeeee
Q 013871 293 YFMTATTAPRLQIDNGIKIFHH-NGSLFFKK 322 (434)
Q Consensus 293 ~l~tas~~prl~~D~~i~iw~~-~g~~~~~~ 322 (434)
+|+.++. |+.+.+.|. +|+.+.+.
T Consensus 337 ~l~v~~~------~G~l~~ld~~tG~~~~~~ 361 (394)
T PRK11138 337 YLVVGDS------EGYLHWINREDGRFVAQQ 361 (394)
T ss_pred EEEEEeC------CCEEEEEECCCCCEEEEE
Confidence 6677777 888888886 66665544
No 448
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=69.43 E-value=56 Score=32.83 Aligned_cols=58 Identities=10% Similarity=0.240 Sum_probs=39.4
Q ss_pred CCeEEEEecCCCCCeEEEEEccCCEEEEEee--CCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec
Q 013871 248 GKFLCLAGFGNLPGDMAFWDYVDGKQLGTTR--AECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN 315 (434)
Q Consensus 248 g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~--~~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~ 315 (434)
.-|+++|+ ..|.|++||.-..+.-..+. +..+..+..+.+|.+|++.+ .+.+.+-|+.
T Consensus 573 sGyIa~as---~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTC-------k~yllL~d~~ 632 (776)
T COG5167 573 SGYIAAAS---RKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATC-------KNYLLLTDVP 632 (776)
T ss_pred CceEEEec---CCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEee-------cceEEEEecc
Confidence 34888888 55799999975443222222 23566689999999988665 5667777763
No 449
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=68.90 E-value=1.3e+02 Score=29.92 Aligned_cols=108 Identities=16% Similarity=0.301 Sum_probs=64.9
Q ss_pred CCCCeEEEEECc-----CCCEEEEEEccCCCeEEEEecc---cc-------eeE-----EeCCcCeeEEEECCCC-----
Q 013871 194 KEGPVHDVQWSY-----SGSEFAVVYGFMPASATIFNKK---CR-------PIL-----ELGSGPYNTVRWNPKG----- 248 (434)
Q Consensus 194 ~~~~i~~v~wsp-----dg~~~av~~g~~~~~v~l~d~~---~~-------~~~-----~~~~~~~~~i~~SP~g----- 248 (434)
-+.||..+..-. +...+||. .|.++.+|.+. +. .+. .+..... .+++-|-|
T Consensus 70 l~~PILqv~~G~F~s~~~~~~LaVL---hP~kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~-nm~~G~Fgg~~~~ 145 (418)
T PF14727_consen 70 LKDPILQVECGKFVSGSEDLQLAVL---HPRKLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAY-NMCCGPFGGVKGR 145 (418)
T ss_pred cCCcEEEEEeccccCCCCcceEEEe---cCCEEEEEEEEecCCCcccCcEEEEEEEEEEeccccee-EEEEEECCCCCCc
Confidence 367888877543 34577765 47799999772 11 011 1112221 23333322
Q ss_pred CeEEEEecCCCCCeEEEEEccCCEEEEEeeCC-CceEEEECCCCCEEEEEEcCCceeeCCcEEEEee
Q 013871 249 KFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH 314 (434)
Q Consensus 249 ~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~ 314 (434)
.+|++-+ +||.+.|++-+.......+... -+.-+.+.|.-..|+++++ +..+..|.|
T Consensus 146 ~~IcVQS---~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt~ss------s~~l~~Yky 203 (418)
T PF14727_consen 146 DFICVQS---MDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVTASS------SWTLECYKY 203 (418)
T ss_pred eEEEEEe---cCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEEecC------ceeEEEecH
Confidence 3666666 7899999998766544444432 2223788888889999988 666666665
No 450
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=68.37 E-value=47 Score=32.03 Aligned_cols=87 Identities=14% Similarity=0.171 Sum_probs=52.0
Q ss_pred EEEEEccCCCeEEEEecccceeEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC----EEEEE-eeCCCc
Q 013871 210 FAVVYGFMPASATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG----KQLGT-TRAECS 282 (434)
Q Consensus 210 ~av~~g~~~~~v~l~d~~~~~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~----~~i~~-~~~~~~ 282 (434)
|++..+...|++..||..++....+ .-..-|.++.|||+.+++++-... ..-.+.|=-... +.... +.+ ..
T Consensus 190 ~a~l~g~~~GRl~~YD~~tK~~~VLld~L~F~NGlaLS~d~sfvl~~Et~~-~ri~rywi~g~k~gt~EvFa~~LPG-~P 267 (376)
T KOG1520|consen 190 FAALEGDPTGRLFRYDPSTKVTKVLLDGLYFPNGLALSPDGSFVLVAETTT-ARIKRYWIKGPKAGTSEVFAEGLPG-YP 267 (376)
T ss_pred EeeecCCCccceEEecCcccchhhhhhcccccccccCCCCCCEEEEEeecc-ceeeeeEecCCccCchhhHhhcCCC-CC
Confidence 4555666778899999887766555 334568899999999999986542 122334421111 11111 111 22
Q ss_pred eEEEECCCCCEEEEEE
Q 013871 283 VTSEWSPDGRYFMTAT 298 (434)
Q Consensus 283 ~~~~wspdg~~l~tas 298 (434)
-.+.-+++|.+-+.-.
T Consensus 268 DNIR~~~~G~fWVal~ 283 (376)
T KOG1520|consen 268 DNIRRDSTGHFWVALH 283 (376)
T ss_pred cceeECCCCCEEEEEe
Confidence 2367788888765543
No 451
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=67.43 E-value=1.2e+02 Score=28.96 Aligned_cols=62 Identities=6% Similarity=0.034 Sum_probs=39.2
Q ss_pred eEEecCCCcEEEEEecCC-CCCCCcEEEEEcCCCcEEEEEeecC------------cCCCCCCeeeecCCCcEEEE
Q 013871 4 LLTCLRVGLIIQTFQKSS-TPQEKNVILWKTETGEAVYQLFQKN------------MTKTTWPSIRFSSDEAVACR 66 (434)
Q Consensus 4 ~l~fSP~g~~L~t~~~~~-~~~d~~v~iWd~~~g~~~~~~~~~~------------~~~~~~~~~~~S~d~~~la~ 66 (434)
+|++.++|.++++.+... ......|..++.. |+.+..+.... ..-...-.++++|||+.|..
T Consensus 89 gi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~ 163 (326)
T PF13449_consen 89 GIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFA 163 (326)
T ss_pred HeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEE
Confidence 578889999999988221 1112788888865 77655542111 01134558999999994444
No 452
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=67.37 E-value=1.1e+02 Score=28.45 Aligned_cols=112 Identities=13% Similarity=0.161 Sum_probs=70.2
Q ss_pred EEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeEEe------CCcCeeEEEECCCCCe
Q 013871 177 LNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL------GSGPYNTVRWNPKGKF 250 (434)
Q Consensus 177 l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~~------~~~~~~~i~~SP~g~~ 250 (434)
+-.|+-..+....++|.....-+.|..-|||..-+. .... -|.-+|-+...+..| .....++..|.+.|++
T Consensus 85 iGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Wit--d~~~-aI~R~dpkt~evt~f~lp~~~a~~nlet~vfD~~G~l 161 (353)
T COG4257 85 IGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWIT--DTGL-AIGRLDPKTLEVTRFPLPLEHADANLETAVFDPWGNL 161 (353)
T ss_pred ceecCCCCCceEEEecCCCCCCceEEECCCCCeeEe--cCcc-eeEEecCcccceEEeecccccCCCcccceeeCCCccE
Confidence 344555555567777776667788999999876652 2211 556667765555554 3566789999999998
Q ss_pred EEEEecCC------CCCeEEEEEccCCEEEEEeeCCCceEEEECCCCCEEEEEEc
Q 013871 251 LCLAGFGN------LPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATT 299 (434)
Q Consensus 251 l~~~~~~~------~~g~i~iwd~~~~~~i~~~~~~~~~~~~wspdg~~l~tas~ 299 (434)
-.++..|- ..+.|++|+.-. +.....++-.|||..-++.-.
T Consensus 162 WFt~q~G~yGrLdPa~~~i~vfpaPq--------G~gpyGi~atpdGsvwyasla 208 (353)
T COG4257 162 WFTGQIGAYGRLDPARNVISVFPAPQ--------GGGPYGICATPDGSVWYASLA 208 (353)
T ss_pred EEeeccccceecCcccCceeeeccCC--------CCCCcceEECCCCcEEEEecc
Confidence 88875331 134555555432 234455677788876665433
No 453
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=67.32 E-value=83 Score=27.20 Aligned_cols=74 Identities=16% Similarity=0.216 Sum_probs=48.1
Q ss_pred CCCEEEEEEccCC-------CeEEEEecccceeEEeCCc------CeeEEEECCCCCeEEEEec--CC--CCCeEEEEEc
Q 013871 206 SGSEFAVVYGFMP-------ASATIFNKKCRPILELGSG------PYNTVRWNPKGKFLCLAGF--GN--LPGDMAFWDY 268 (434)
Q Consensus 206 dg~~~av~~g~~~-------~~v~l~d~~~~~~~~~~~~------~~~~i~~SP~g~~l~~~~~--~~--~~g~i~iwd~ 268 (434)
++++-|.+-|-.+ |.|+|+|+.......+..+ .-..+.|--|..++++-|+ |. ..|.++++++
T Consensus 68 ~~~~saciegkg~~a~eEgiGkIYIkn~~~~~~~~L~i~~~~~k~sPK~i~WiDD~~L~vIIG~a~GTvS~GGnLy~~nl 147 (200)
T PF15525_consen 68 NGKYSACIEGKGPEAEEEGIGKIYIKNLNNNNWWSLQIDQNEEKYSPKYIEWIDDNNLAVIIGYAHGTVSKGGNLYKYNL 147 (200)
T ss_pred CCceeEEEEcCCCccccccceeEEEEecCCCceEEEEecCcccccCCceeEEecCCcEEEEEccccceEccCCeEEEEEc
Confidence 4666666655433 4899999876655544111 1126888888888887764 32 3589999999
Q ss_pred cCCEEEEEeeC
Q 013871 269 VDGKQLGTTRA 279 (434)
Q Consensus 269 ~~~~~i~~~~~ 279 (434)
.+++....+..
T Consensus 148 ~tg~~~~ly~~ 158 (200)
T PF15525_consen 148 NTGNLTELYEW 158 (200)
T ss_pred cCCceeEeeec
Confidence 99866555543
No 454
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=65.49 E-value=21 Score=31.81 Aligned_cols=54 Identities=15% Similarity=0.122 Sum_probs=31.1
Q ss_pred EccCCCeEEEEecccceeEEe---CC-cCeeEEEECCCCCeEEEE--ecCCCCCeEEEEEccC
Q 013871 214 YGFMPASATIFNKKCRPILEL---GS-GPYNTVRWNPKGKFLCLA--GFGNLPGDMAFWDYVD 270 (434)
Q Consensus 214 ~g~~~~~v~l~d~~~~~~~~~---~~-~~~~~i~~SP~g~~l~~~--~~~~~~g~i~iwd~~~ 270 (434)
.+..++.++.++.+-...... |+ .+...+..+-.+++|+++ +. +-.+++|++..
T Consensus 119 ~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~---d~~~k~W~ve~ 178 (238)
T KOG2444|consen 119 VGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSH---DRVLKKWNVEK 178 (238)
T ss_pred EeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeecccc---chhhhhcchhh
Confidence 477789999999875443332 33 344444455555555555 32 23566666653
No 455
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=65.01 E-value=44 Score=34.89 Aligned_cols=69 Identities=23% Similarity=0.589 Sum_probs=46.8
Q ss_pred CCCCCeEEEEEC--cCCCEEEEEEccCCCeEEEEec-c---------cceeE-----EeCCcCeeEEEECCCCCeEEEEe
Q 013871 193 RKEGPVHDVQWS--YSGSEFAVVYGFMPASATIFNK-K---------CRPIL-----ELGSGPYNTVRWNPKGKFLCLAG 255 (434)
Q Consensus 193 ~~~~~i~~v~ws--pdg~~~av~~g~~~~~v~l~d~-~---------~~~~~-----~~~~~~~~~i~~SP~g~~l~~~~ 255 (434)
+..++|.++.|. |||..+..+ |+ +..|.+|-. + ..++. ++...++.+..|-++|.+++.+|
T Consensus 70 ~~~~~I~dLDWtst~d~qsiLaV-Gf-~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG 147 (631)
T PF12234_consen 70 SEDDPIRDLDWTSTPDGQSILAV-GF-PHHVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG 147 (631)
T ss_pred cCCCceeeceeeecCCCCEEEEE-Ec-CcEEEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC
Confidence 447899999997 566655543 55 568887732 1 11222 23457889999999999887654
Q ss_pred cCCCCCeEEEEEc
Q 013871 256 FGNLPGDMAFWDY 268 (434)
Q Consensus 256 ~~~~~g~i~iwd~ 268 (434)
| .+.|+|.
T Consensus 148 --N---qlfv~dk 155 (631)
T PF12234_consen 148 --N---QLFVFDK 155 (631)
T ss_pred --C---EEEEECC
Confidence 4 8999874
No 456
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=63.12 E-value=1.2e+02 Score=27.46 Aligned_cols=88 Identities=13% Similarity=0.230 Sum_probs=54.0
Q ss_pred eEEEEECcCCCEEEEEEccCCCeEEEEe--ccc------ceeEEeCCc------CeeEEEECCCCCeEEEEecCCCCCeE
Q 013871 198 VHDVQWSYSGSEFAVVYGFMPASATIFN--KKC------RPILELGSG------PYNTVRWNPKGKFLCLAGFGNLPGDM 263 (434)
Q Consensus 198 i~~v~wspdg~~~av~~g~~~~~v~l~d--~~~------~~~~~~~~~------~~~~i~~SP~g~~l~~~~~~~~~g~i 263 (434)
-+.++|+-|-+.|.++ .+.+-.|.-|| ..+ ..++++.+. .-..++..-+|.+.+.. +. .|+|
T Consensus 160 sNgl~Wd~d~K~fY~i-Dsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~-~n--g~~V 235 (310)
T KOG4499|consen 160 SNGLAWDSDAKKFYYI-DSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVAT-FN--GGTV 235 (310)
T ss_pred CccccccccCcEEEEE-ccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEE-ec--CcEE
Confidence 3579999999999876 44455676666 322 234443210 11123334456544443 32 3699
Q ss_pred EEEEccCCEEEEEeeCC--CceEEEECC
Q 013871 264 AFWDYVDGKQLGTTRAE--CSVTSEWSP 289 (434)
Q Consensus 264 ~iwd~~~~~~i~~~~~~--~~~~~~wsp 289 (434)
.-.|..+|+.+..+.-+ .+++|+|--
T Consensus 236 ~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 236 QKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred EEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 99999999998887665 667788853
No 457
>PF10008 DUF2251: Uncharacterized protein conserved in bacteria (DUF2251); InterPro: IPR014449 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=62.77 E-value=28 Score=26.33 Aligned_cols=26 Identities=27% Similarity=0.308 Sum_probs=20.4
Q ss_pred eeeecCCCcEEEEecCCeEE-EEeCCC
Q 013871 54 SIRFSSDEAVACRMATNEIQ-FFDTTD 79 (434)
Q Consensus 54 ~~~~S~d~~~la~~~~~~i~-v~~~~~ 79 (434)
.+.||.|+..++...++..+ +||...
T Consensus 59 ~I~Wsedg~~a~L~Ingy~hA~FDF~~ 85 (97)
T PF10008_consen 59 SICWSEDGQKAALLINGYPHAVFDFAN 85 (97)
T ss_pred EEEEcccccEEEEEECCcEEEEEEecc
Confidence 78999999999988887654 566544
No 458
>KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=62.20 E-value=70 Score=34.50 Aligned_cols=107 Identities=19% Similarity=0.198 Sum_probs=53.7
Q ss_pred EECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCC--------C
Q 013871 148 NWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMP--------A 219 (434)
Q Consensus 148 ~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~--------~ 219 (434)
..+||.+.+++.... ...--.++++...++.+.... ....+......+..+.|+|.++.++.+....- .
T Consensus 103 ~~s~d~~~~~~~~~~-~~~~rhs~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~wsp~~~~l~yv~~~niy~~~~~~~~ 179 (755)
T KOG2100|consen 103 LISPDRKYILLGRNY-KKRFRHSYTAKYHLYDLNTGE--KLHPPEYEGSKIQYASWSPLGNDLAYVLHNNIYYQSSEEDE 179 (755)
T ss_pred ccChhhhhheeccCc-ccccceeeEEEEEEEEcCCCC--cccCcccCCCeeEEEEEcCCCCEEEEEEecccccccCcCCC
Confidence 456777766553211 112222444444444443333 11222223456789999999999887654210 0
Q ss_pred eE-EEEecccceeEEeC---------CcCeeEEEECCCCCeEEEEecC
Q 013871 220 SA-TIFNKKCRPILELG---------SGPYNTVRWNPKGKFLCLAGFG 257 (434)
Q Consensus 220 ~v-~l~d~~~~~~~~~~---------~~~~~~i~~SP~g~~l~~~~~~ 257 (434)
.+ .+++-....++..- -.....+-|||+|..++.+.+.
T Consensus 180 ~~~~~~~~~~~~i~ng~~Dw~yeeEv~~~~~a~wwsp~g~~la~~~~~ 227 (755)
T KOG2100|consen 180 DVRIVSNGGEDVIFNGKPDWIYEEEVLSSDSAIWWSPDGDRLAYASFN 227 (755)
T ss_pred ceEEEecCCCceEEcCCCCceeehhhcccCccceeCCCCceeEEEEec
Confidence 11 11211111122111 1233467899999999977654
No 459
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.27 E-value=2.2e+02 Score=31.90 Aligned_cols=48 Identities=17% Similarity=0.131 Sum_probs=32.7
Q ss_pred CeEEEEEccCCEEEEEeeCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc
Q 013871 261 GDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS 317 (434)
Q Consensus 261 g~i~iwd~~~~~~i~~~~~~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~ 317 (434)
+.+-+|+.........+... ...++++|..+++..+ ||.+..||++..
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~v~~h~------Dgs~~fWd~s~g 266 (993)
T KOG1983|consen 219 GLVVIKDRASKYVQSAYLPN---GQLESRDGSHFVSYHT------DGSYAFWDVSSG 266 (993)
T ss_pred eeeeehhcccccchhhcccc---cccCccCCceEEEEEe------cCCEEeeecCCC
Confidence 46667766544333332221 1233999999999999 999999999764
No 460
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=57.41 E-value=55 Score=22.04 Aligned_cols=48 Identities=21% Similarity=0.261 Sum_probs=27.0
Q ss_pred eeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceEEEECCCCCE
Q 013871 239 YNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRY 293 (434)
Q Consensus 239 ~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~~~wspdg~~ 293 (434)
...++.-|||++|+.|.+.+..+ ...-.+..+.......-.|..+|..
T Consensus 3 ~~~~~~q~DGkIlv~G~~~~~~~-------~~~~~l~Rln~DGsLDttFg~~G~v 50 (55)
T TIGR02608 3 AYAVAVQSDGKILVAGYVDNSSG-------NNDFVLARLNADGSLDTTFGTGGKV 50 (55)
T ss_pred eEEEEECCCCcEEEEEEeecCCC-------cccEEEEEECCCCCccCCcCCCcEE
Confidence 46788899999999887543101 1112334444444445555555544
No 461
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=57.15 E-value=1.7e+02 Score=27.43 Aligned_cols=107 Identities=12% Similarity=0.043 Sum_probs=57.7
Q ss_pred eEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCC
Q 013871 4 LLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPK 82 (434)
Q Consensus 4 ~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~ 82 (434)
.+.||-+=-|++- ++.-|+|.|+.+-+......+-+. ..+ .-.|.=.|+++.... ++-+.++|+.+.+.
T Consensus 91 Dv~vse~yvyvad-------~ssGL~IvDIS~P~sP~~~~~lnt--~gy-aygv~vsGn~aYVadlddgfLivdvsdpss 160 (370)
T COG5276 91 DVRVSEEYVYVAD-------WSSGLRIVDISTPDSPTLIGFLNT--DGY-AYGVYVSGNYAYVADLDDGFLIVDVSDPSS 160 (370)
T ss_pred eeEecccEEEEEc-------CCCceEEEeccCCCCcceeccccC--Cce-EEEEEecCCEEEEeeccCcEEEEECCCCCC
Confidence 3455544444443 346699999987655443332221 344 456666788877764 77888999887665
Q ss_pred cee-eeeecCC--eeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCC
Q 013871 83 GIL-YRLRVPG--VAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKD 128 (434)
Q Consensus 83 ~~~-~~~~~~~--v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~ 128 (434)
... -+....+ ...+.+|-+ --+++.| .+-+.|.++.+.
T Consensus 161 P~lagrya~~~~d~~~v~ISGn-~AYvA~~-------d~GL~ivDVSnp 201 (370)
T COG5276 161 PQLAGRYALPGGDTHDVAISGN-YAYVAWR-------DGGLTIVDVSNP 201 (370)
T ss_pred ceeeeeeccCCCCceeEEEecC-eEEEEEe-------CCCeEEEEccCC
Confidence 322 1222221 234555533 1233333 123577777663
No 462
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=54.40 E-value=50 Score=29.24 Aligned_cols=48 Identities=21% Similarity=0.248 Sum_probs=34.7
Q ss_pred CeEEEEecCCCCCeEEEEEcc--CCEEEEEeeCC-CceEEEECCCCCEEEEEEc
Q 013871 249 KFLCLAGFGNLPGDMAFWDYV--DGKQLGTTRAE-CSVTSEWSPDGRYFMTATT 299 (434)
Q Consensus 249 ~~l~~~~~~~~~g~i~iwd~~--~~~~i~~~~~~-~~~~~~wspdg~~l~tas~ 299 (434)
..|.++..++ .|++||+. ..+.+..+..- .+..+..+.-|.||+|--.
T Consensus 29 d~Lfva~~g~---~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~ 79 (215)
T PF14761_consen 29 DALFVAASGC---KVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEE 79 (215)
T ss_pred ceEEEEcCCC---EEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEe
Confidence 4555555444 89999988 33566666553 5566999999999999765
No 463
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=53.34 E-value=2.3e+02 Score=27.85 Aligned_cols=78 Identities=18% Similarity=0.252 Sum_probs=44.2
Q ss_pred eEEEEecccceeEEe--CC-----cCeeEEEECCCCCeEEEEecCCCC------CeEEEEEccCCEEEEEe-eC--CCc-
Q 013871 220 SATIFNKKCRPILEL--GS-----GPYNTVRWNPKGKFLCLAGFGNLP------GDMAFWDYVDGKQLGTT-RA--ECS- 282 (434)
Q Consensus 220 ~v~l~d~~~~~~~~~--~~-----~~~~~i~~SP~g~~l~~~~~~~~~------g~i~iwd~~~~~~i~~~-~~--~~~- 282 (434)
.+.+||++.+.-.++ .. ....-++|- -++|+.|||-... .+|++||+++.+-...- .+ +..
T Consensus 155 D~W~fd~~trkweql~~~g~PS~RSGHRMvawK--~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpR 232 (521)
T KOG1230|consen 155 DLWLFDLKTRKWEQLEFGGGPSPRSGHRMVAWK--RQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPR 232 (521)
T ss_pred heeeeeeccchheeeccCCCCCCCccceeEEee--eeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCCCC
Confidence 467778766554433 22 222345663 3577888875432 35778888887532221 22 211
Q ss_pred --eEEEECCCCCEEEEEEc
Q 013871 283 --VTSEWSPDGRYFMTATT 299 (434)
Q Consensus 283 --~~~~wspdg~~l~tas~ 299 (434)
.++.-+|+|..++-|+.
T Consensus 233 SGcq~~vtpqg~i~vyGGY 251 (521)
T KOG1230|consen 233 SGCQFSVTPQGGIVVYGGY 251 (521)
T ss_pred CcceEEecCCCcEEEEcch
Confidence 23666788888888876
No 464
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=51.95 E-value=1e+02 Score=27.26 Aligned_cols=130 Identities=14% Similarity=0.125 Sum_probs=0.0
Q ss_pred EEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCC-eEEEEeCCCCCCceeeeeecC
Q 013871 13 IIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATN-EIQFFDTTDFPKGILYRLRVP 91 (434)
Q Consensus 13 ~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~ 91 (434)
|.+||. |+.-.++|..+-+++.+|.... ++| ....|++-|..+.+. ++++-|..++.......+..+
T Consensus 104 y~LTw~------egvaf~~d~~t~~~lg~~~y~G---eGW---gLt~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~ 171 (262)
T COG3823 104 YQLTWK------EGVAFKYDADTLEELGRFSYEG---EGW---GLTSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDD 171 (262)
T ss_pred EEEEec------cceeEEEChHHhhhhcccccCC---cce---eeecCCcceEeeCCceEEEecCHHHhhhcceEEEEEC
Q ss_pred -----CeeEEEEeCCC-------CCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEE
Q 013871 92 -----GVAAFEVSKAP-------GSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAV 159 (434)
Q Consensus 92 -----~v~~~~~sp~~-------~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~ 159 (434)
.+..++|-.+. ...|+...|+++...+.|.+-.+ ...+....-+..--..++.-|++..+++.
T Consensus 172 g~pv~~LNELE~VdG~lyANVw~t~~I~rI~p~sGrV~~widlS~L-----~~~~~~~~~~~nvlNGIA~~~~~~r~~iT 246 (262)
T COG3823 172 GVPVSKLNELEWVDGELYANVWQTTRIARIDPDSGRVVAWIDLSGL-----LKELNLDKSNDNVLNGIAHDPQQDRFLIT 246 (262)
T ss_pred CeecccccceeeeccEEEEeeeeecceEEEcCCCCcEEEEEEccCC-----chhcCccccccccccceeecCcCCeEEEe
No 465
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.26 E-value=2.7e+02 Score=27.89 Aligned_cols=159 Identities=6% Similarity=0.022 Sum_probs=80.2
Q ss_pred eeecCCCcEEEEecCCeEEEEeCCCCCCceeeeee---cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCC
Q 013871 55 IRFSSDEAVACRMATNEIQFFDTTDFPKGILYRLR---VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQS 131 (434)
Q Consensus 55 ~~~S~d~~~la~~~~~~i~v~~~~~~~~~~~~~~~---~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~ 131 (434)
+-|...++.+.+...+.+.=|.+..++......+. -..|.++.||+| +..+|+-- ....|.+++.......
T Consensus 28 vFfDDaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlD-nkilAVQR-----~~~~v~f~nf~~d~~~ 101 (657)
T KOG2377|consen 28 VFFDDANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLD-NKILAVQR-----TSKTVDFCNFIPDNSQ 101 (657)
T ss_pred eeeccCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccC-cceEEEEe-----cCceEEEEecCCCchh
Confidence 33444455555444555555655444322222222 236999999999 77787642 2346677665221101
Q ss_pred Cceee-eeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEE
Q 013871 132 QPLAR-RSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEF 210 (434)
Q Consensus 132 ~~i~~-~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~ 210 (434)
..... .......+..+.|+.. +.++++..+.. .+|.+..... ..+.--.+...|+=..|.|+-+..
T Consensus 102 l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G~-----------e~y~v~pekr-slRlVks~~~nvnWy~yc~et~v~ 168 (657)
T KOG2377|consen 102 LEYTQECKTKNANILGFCWTSS-TEIAFITDQGI-----------EFYQVLPEKR-SLRLVKSHNLNVNWYMYCPETAVI 168 (657)
T ss_pred hHHHHHhccCcceeEEEEEecC-eeEEEEecCCe-----------EEEEEchhhh-hhhhhhhcccCccEEEEccccceE
Confidence 11111 1112234678899876 55666543321 2333322111 111111235677788999988777
Q ss_pred EEEEccCCCeEEEEecccceeE
Q 013871 211 AVVYGFMPASATIFNKKCRPIL 232 (434)
Q Consensus 211 av~~g~~~~~v~l~d~~~~~~~ 232 (434)
.++++-..+.+.=|.++...+.
T Consensus 169 LL~t~~~~n~lnpf~~~~~~v~ 190 (657)
T KOG2377|consen 169 LLSTTVLENVLNPFHFRAGTMS 190 (657)
T ss_pred eeeccccccccccEEEeeceee
Confidence 7766644444443444444333
No 466
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=49.60 E-value=3.7e+02 Score=29.12 Aligned_cols=146 Identities=14% Similarity=0.120 Sum_probs=80.0
Q ss_pred cEEEEecCCeEEEEeC------CCCCC-------ceeeeeec-----CCeeEEEEeCCCCCeEEEEecCCCCCCceEEEE
Q 013871 62 AVACRMATNEIQFFDT------TDFPK-------GILYRLRV-----PGVAAFEVSKAPGSHVAVFVPESKGSPASVQIY 123 (434)
Q Consensus 62 ~~la~~~~~~i~v~~~------~~~~~-------~~~~~~~~-----~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~ 123 (434)
++|+.-....+.|+.. ..... .....+.. ....+++|.|.....+|+. ...|...||
T Consensus 99 ~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~~~~q~AiV-----D~~G~Wsvw 173 (765)
T PF10214_consen 99 RWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPWDQRQFAIV-----DEKGNWSVW 173 (765)
T ss_pred cEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccCccceEEEE-----eccCcEEEE
Confidence 5787778888888882 11110 11112221 1467889999866677764 334688999
Q ss_pred EcCCCC-CCC-ceee-----eee-cccc----eeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCccee--e
Q 013871 124 ACGKDL-QSQ-PLAR-----RSF-FRCS----TVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEG--L 189 (434)
Q Consensus 124 ~~~~~~-~~~-~i~~-----~~~-~~~~----~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~--~ 189 (434)
++.... ... .+.. .+. +... -..+.|..+-..|+++.. ..|..+++.+.... .
T Consensus 174 ~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r-------------~~l~~~d~~~~~~~~~l 240 (765)
T PF10214_consen 174 DIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR-------------SKLMLIDFESNWQTEYL 240 (765)
T ss_pred EeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-------------CceEEEECCCCCccchh
Confidence 992210 011 1100 011 1111 237889888888877632 23566665554332 2
Q ss_pred eecCCCCCeEEEEECcCC-CEEEEEEccCCCeEEEEeccc
Q 013871 190 VPLRKEGPVHDVQWSYSG-SEFAVVYGFMPASATIFNKKC 228 (434)
Q Consensus 190 v~l~~~~~i~~v~wspdg-~~~av~~g~~~~~v~l~d~~~ 228 (434)
+.......|.++.-+|+. .++++++. ..|.++|++.
T Consensus 241 ~~~~~~~~IlDv~~~~~~~~~~FiLTs---~eiiw~~~~~ 277 (765)
T PF10214_consen 241 VTAKTWSWILDVKRSPDNPSHVFILTS---KEIIWLDVKS 277 (765)
T ss_pred ccCCChhheeeEEecCCccceEEEEec---CeEEEEEccC
Confidence 222335789999999873 23334343 3677777765
No 467
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=48.72 E-value=2.8e+02 Score=27.35 Aligned_cols=97 Identities=15% Similarity=0.182 Sum_probs=49.5
Q ss_pred EEEEEccCCCeEEEEecc-cceeEEeCCcCe--eEEEEC-----CCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCC
Q 013871 210 FAVVYGFMPASATIFNKK-CRPILELGSGPY--NTVRWN-----PKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAEC 281 (434)
Q Consensus 210 ~av~~g~~~~~v~l~d~~-~~~~~~~~~~~~--~~i~~S-----P~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~ 281 (434)
++++.+ ...+++|..- .+..+..-+.+. ..+.+- ..+..|++-- .+|.|+++.+-..+.+....-+.
T Consensus 228 ~vVvvS--e~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~---~~G~i~i~SLP~Lkei~~~~l~~ 302 (395)
T PF08596_consen 228 YVVVVS--ESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLF---NNGSIRIYSLPSLKEIKSVSLPP 302 (395)
T ss_dssp EEEEE---SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEE---TTSEEEEEETTT--EEEEEE-SS
T ss_pred EEEEEc--ccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEE---CCCcEEEEECCCchHhhcccCCC
Confidence 444444 3478888763 333332223222 233442 2333444433 45899999999998888777642
Q ss_pred ------ceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCce
Q 013871 282 ------SVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL 318 (434)
Q Consensus 282 ------~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~ 318 (434)
...+.++++|+.++..+ ...+.++.+-++.
T Consensus 303 ~~d~~~~~~ssis~~Gdi~~~~g-------psE~~l~sv~~~~ 338 (395)
T PF08596_consen 303 PLDSRRLSSSSISRNGDIFYWTG-------PSEIQLFSVWGEG 338 (395)
T ss_dssp ---HHHHTT-EE-TTS-EEEE-S-------SSEEEEEEEES--
T ss_pred ccccccccccEECCCCCEEEEeC-------cccEEEEEEEccC
Confidence 22378899999877765 5677777775553
No 468
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=48.61 E-value=27 Score=37.40 Aligned_cols=70 Identities=17% Similarity=0.311 Sum_probs=39.6
Q ss_pred CCeEEEEECcC-CCEEEEEEccCCCeEEEEeccc--ceeEEeCCcC-----------eeEEEECCCCCeEEEEecCCCCC
Q 013871 196 GPVHDVQWSYS-GSEFAVVYGFMPASATIFNKKC--RPILELGSGP-----------YNTVRWNPKGKFLCLAGFGNLPG 261 (434)
Q Consensus 196 ~~i~~v~wspd-g~~~av~~g~~~~~v~l~d~~~--~~~~~~~~~~-----------~~~i~~SP~g~~l~~~~~~~~~g 261 (434)
.++.-|.|.|= -+...++++..++.+.+.+... ..++.-|... +.--..||||..++.+. .+|
T Consensus 181 s~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~---~dG 257 (1283)
T KOG1916|consen 181 SDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAI---SDG 257 (1283)
T ss_pred CCcceeeecccccccceeeeccCCCceeEeeechHHHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEee---cCC
Confidence 34566777761 1124444788888887765431 1111113222 22234899999999988 456
Q ss_pred eEEEEEc
Q 013871 262 DMAFWDY 268 (434)
Q Consensus 262 ~i~iwd~ 268 (434)
.+.+|.+
T Consensus 258 ~v~f~Qi 264 (1283)
T KOG1916|consen 258 SVGFYQI 264 (1283)
T ss_pred ccceeee
Confidence 6666653
No 469
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=47.37 E-value=3.2e+02 Score=27.69 Aligned_cols=101 Identities=15% Similarity=0.178 Sum_probs=59.1
Q ss_pred EccCCCeEEEEecc-cceeEEeCCcCeeEEEECCCCCeEEEEec---------------CCCCCeEEEEEccCCEEEEEe
Q 013871 214 YGFMPASATIFNKK-CRPILELGSGPYNTVRWNPKGKFLCLAGF---------------GNLPGDMAFWDYVDGKQLGTT 277 (434)
Q Consensus 214 ~g~~~~~v~l~d~~-~~~~~~~~~~~~~~i~~SP~g~~l~~~~~---------------~~~~g~i~iwd~~~~~~i~~~ 277 (434)
.+..++.+..+|.+ ++.+.+.... ...+..+| ..+.++.. ...+|.|.-.|+.+++.+...
T Consensus 306 ~g~~~G~l~ald~~tG~~~W~~~~~-~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~ 382 (488)
T cd00216 306 HAPKNGFFYVLDRTTGKLISARPEV-EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEK 382 (488)
T ss_pred EECCCceEEEEECCCCcEeeEeEee-ccccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEe
Confidence 46678889999985 4555444221 12244555 33333221 113578999999999888776
Q ss_pred eCCCce----------EEEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceeeeee
Q 013871 278 RAECSV----------TSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKKM 323 (434)
Q Consensus 278 ~~~~~~----------~~~wspdg~~l~tas~~prl~~D~~i~iw~~-~g~~~~~~~ 323 (434)
...... .-.-.-.|..|++++. |+.++.+|. +|+++-+.+
T Consensus 383 ~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~------dG~l~ald~~tG~~lW~~~ 433 (488)
T cd00216 383 REGTIRDSWNIGFPHWGGSLATAGNLVFAGAA------DGYFRAFDATTGKELWKFR 433 (488)
T ss_pred eCCccccccccCCcccCcceEecCCeEEEECC------CCeEEEEECCCCceeeEEE
Confidence 543100 0001124567777777 888888887 676655543
No 470
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=47.18 E-value=2.2e+02 Score=25.85 Aligned_cols=109 Identities=20% Similarity=0.222 Sum_probs=61.2
Q ss_pred EEEEECcCCCEEEEEEccCCC--eEEEEeccc----ceeEEeC-----CcCeeEEEECCCCCeEEEEecCCCCCeEEEEE
Q 013871 199 HDVQWSYSGSEFAVVYGFMPA--SATIFNKKC----RPILELG-----SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWD 267 (434)
Q Consensus 199 ~~v~wspdg~~~av~~g~~~~--~v~l~d~~~----~~~~~~~-----~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd 267 (434)
..-++-|||+.+.+ .|..++ .+++|+.-. ....+.. ..---+..-=|||+.|++||..+ .+.++|.
T Consensus 70 Sgg~~L~dG~ll~t-GG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~DG~vlIvGG~~~--~t~E~~P 146 (243)
T PF07250_consen 70 SGGAFLPDGRLLQT-GGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPDGRVLIVGGSNN--PTYEFWP 146 (243)
T ss_pred cCcCCCCCCCEEEe-CCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECCCCCEEEEeCcCC--CcccccC
Confidence 33456688877764 455444 677776532 1111111 11123455568999999999764 5678887
Q ss_pred ccCC--EEEE-----Eee--CCCce--EEEECCCCCEEEEEEcCCceeeCCcEEEEeecCce
Q 013871 268 YVDG--KQLG-----TTR--AECSV--TSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL 318 (434)
Q Consensus 268 ~~~~--~~i~-----~~~--~~~~~--~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~ 318 (434)
.... .... .+. ...-. .+...|||+.|+.+.. .-.|||+....
T Consensus 147 ~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~--------~s~i~d~~~n~ 200 (243)
T PF07250_consen 147 PKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANR--------GSIIYDYKTNT 200 (243)
T ss_pred CccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcC--------CcEEEeCCCCe
Confidence 5321 1111 111 11111 2667899999988754 45677887653
No 471
>KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=46.97 E-value=4.1e+02 Score=28.80 Aligned_cols=45 Identities=13% Similarity=0.106 Sum_probs=21.5
Q ss_pred CCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC
Q 013871 25 EKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT 69 (434)
Q Consensus 25 d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~ 69 (434)
++++.+++...+....-+..+......+.....|||.++++.+.+
T Consensus 72 ~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~d~~~~~~~~~ 116 (755)
T KOG2100|consen 72 DGNIVVSNALYGLSSVPLTNSTFGRLRYSSDLISPDRKYILLGRN 116 (755)
T ss_pred CCceEeecccCcccEEEecccchhhccccccccChhhhhheeccC
Confidence 567777777666432222221111122212355667777766543
No 472
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=46.52 E-value=70 Score=29.06 Aligned_cols=80 Identities=13% Similarity=0.157 Sum_probs=45.1
Q ss_pred eEEEEecccceeEEeC---CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccC----CEEE---EEeeCC-CceEEEEC
Q 013871 220 SATIFNKKCRPILELG---SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD----GKQL---GTTRAE-CSVTSEWS 288 (434)
Q Consensus 220 ~v~l~d~~~~~~~~~~---~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~----~~~i---~~~~~~-~~~~~~ws 288 (434)
...+||+..+.+..+. .-....-.+-|||++|.+||.......+++++..+ .... ..+... .--...--
T Consensus 47 ~s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L 126 (243)
T PF07250_consen 47 HSVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTL 126 (243)
T ss_pred EEEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceEC
Confidence 4456666555544432 12222345779999999988644334588887544 1111 111111 22224556
Q ss_pred CCCCEEEEEEc
Q 013871 289 PDGRYFMTATT 299 (434)
Q Consensus 289 pdg~~l~tas~ 299 (434)
|||+.|+.++.
T Consensus 127 ~DG~vlIvGG~ 137 (243)
T PF07250_consen 127 PDGRVLIVGGS 137 (243)
T ss_pred CCCCEEEEeCc
Confidence 79999999987
No 473
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=46.24 E-value=8.8 Score=20.70 Aligned_cols=9 Identities=22% Similarity=0.150 Sum_probs=7.1
Q ss_pred EecCCCcEE
Q 013871 6 TCLRVGLII 14 (434)
Q Consensus 6 ~fSP~g~~L 14 (434)
.|||+|+.+
T Consensus 7 ~FSp~Grl~ 15 (23)
T PF10584_consen 7 TFSPDGRLF 15 (23)
T ss_dssp SBBTTSSBH
T ss_pred eECCCCeEE
Confidence 499999864
No 474
>KOG4305 consensus RhoGEF GTPase [Signal transduction mechanisms]
Probab=45.89 E-value=3.2e+02 Score=30.44 Aligned_cols=63 Identities=11% Similarity=0.007 Sum_probs=40.1
Q ss_pred eeEEeCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceE----EEECCCCCEEEEEEc
Q 013871 230 PILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVT----SEWSPDGRYFMTATT 299 (434)
Q Consensus 230 ~~~~~~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~----~~wspdg~~l~tas~ 299 (434)
.++.+...+.....+.| ||+.-+ + .-|+|||+++++++....++.+-. ..|.-+|..++.+..
T Consensus 947 ~~~~w~g~p~~~a~~~~---yiia~~-~---~fIeI~~~~t~eli~~i~~~~Ir~~~~~~~~l~~~~~~~~~~~ 1013 (1029)
T KOG4305|consen 947 WIFLWEGEPQEFALSYP---YIIAFG-D---NFIEIRDLETGELIQIILGQNIRLLTSGLGPLLHGGKIIYYCY 1013 (1029)
T ss_pred EEEEEcCccceeeeecc---eEEEec-C---ceEEEEecccceeeEEeeccceeEeecCcccccCCCeEEEEEe
Confidence 34445566666666665 444432 2 389999999999999888875533 566655555444433
No 475
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=45.47 E-value=56 Score=18.57 Aligned_cols=25 Identities=20% Similarity=0.153 Sum_probs=17.7
Q ss_pred eEEEEecCCCCCeEEEEEccCCEEEEEe
Q 013871 250 FLCLAGFGNLPGDMAFWDYVDGKQLGTT 277 (434)
Q Consensus 250 ~l~~~~~~~~~g~i~iwd~~~~~~i~~~ 277 (434)
.++++. .+|.+..+|.++++.+..+
T Consensus 8 ~v~~~~---~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 8 TVYVGS---TDGTLYALDAKTGEILWTY 32 (33)
T ss_pred EEEEEc---CCCEEEEEEcccCcEEEEc
Confidence 455555 4579999999888876543
No 476
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=44.51 E-value=79 Score=32.44 Aligned_cols=20 Identities=25% Similarity=0.350 Sum_probs=15.4
Q ss_pred CceEEEECCCCCEEEEEEcC
Q 013871 281 CSVTSEWSPDGRYFMTATTA 300 (434)
Q Consensus 281 ~~~~~~wspdg~~l~tas~~ 300 (434)
.++-+.|+|||+.|.+.-..
T Consensus 503 E~tG~~fspDg~tlFvniQH 522 (524)
T PF05787_consen 503 EITGPCFSPDGRTLFVNIQH 522 (524)
T ss_pred ccccceECCCCCEEEEEEeC
Confidence 44558999999998886553
No 477
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=43.85 E-value=3.6e+02 Score=27.29 Aligned_cols=118 Identities=11% Similarity=-0.006 Sum_probs=54.2
Q ss_pred EEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCC--CCCeEEEEECcCCCEEEEEEc-------c-
Q 013871 147 LNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK--EGPVHDVQWSYSGSEFAVVYG-------F- 216 (434)
Q Consensus 147 ~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~--~~~i~~v~wspdg~~~av~~g-------~- 216 (434)
+...++|..++.. . ..+..++..|.......+.. ..--|++.+-|+|+.|++++- .
T Consensus 153 ~~~l~nG~ll~~~-~-------------~~~~e~D~~G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~ 218 (477)
T PF05935_consen 153 FKQLPNGNLLIGS-G-------------NRLYEIDLLGKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKD 218 (477)
T ss_dssp EEE-TTS-EEEEE-B-------------TEEEEE-TT--EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-E
T ss_pred eeEcCCCCEEEec-C-------------CceEEEcCCCCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCC
Confidence 5567788765432 1 23555666665333334432 122478999999998887651 1
Q ss_pred ----CC---------CeEEEEecccce--eEE----------eC-------CcCeeEEEECCCCCeEEEEecCCCCCeEE
Q 013871 217 ----MP---------ASATIFNKKCRP--ILE----------LG-------SGPYNTVRWNPKGKFLCLAGFGNLPGDMA 264 (434)
Q Consensus 217 ----~~---------~~v~l~d~~~~~--~~~----------~~-------~~~~~~i~~SP~g~~l~~~~~~~~~g~i~ 264 (434)
.| ..+..||+.... ... .. =-.+|++.+.|....|++.++ ....|.
T Consensus 219 ~~~~~D~Ivevd~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR--~~s~V~ 296 (477)
T PF05935_consen 219 VDTVEDVIVEVDPTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSR--HQSAVI 296 (477)
T ss_dssp E---S-EEEEE-TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEET--TT-EEE
T ss_pred ccEecCEEEEECCCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcC--cceEEE
Confidence 01 123344432110 000 00 035789999995555544443 234888
Q ss_pred EEEccCCEEEEEeeCC
Q 013871 265 FWDYVDGKQLGTTRAE 280 (434)
Q Consensus 265 iwd~~~~~~i~~~~~~ 280 (434)
..|.++++....+..+
T Consensus 297 ~Id~~t~~i~Wilg~~ 312 (477)
T PF05935_consen 297 KIDYRTGKIKWILGPP 312 (477)
T ss_dssp EEE-TTS-EEEEES-S
T ss_pred EEECCCCcEEEEeCCC
Confidence 8998888887776554
No 478
>PRK13614 lipoprotein LpqB; Provisional
Probab=42.85 E-value=4.1e+02 Score=27.66 Aligned_cols=144 Identities=15% Similarity=0.168 Sum_probs=71.8
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC-C--eEEEEeCC
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT-N--EIQFFDTT 78 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~-~--~i~v~~~~ 78 (434)
+.+++.|++|..++... .|+ -.+|-...|.....+... .....+.|.+++ .+=+..+ + .|..+...
T Consensus 345 ~~s~avS~~g~~~A~~~-----~~~-~~l~~~~~g~~~~~~~~g----~~Lt~PS~d~~g-~vWtv~~g~~~~vv~~~~~ 413 (573)
T PRK13614 345 PASPAESPVSQTVAFLN-----GSR-TTLYTVSPGQPARALTSG----STLTRPSFSPQD-WVWTAGPGGNGRIVAYRPT 413 (573)
T ss_pred ccceeecCCCceEEEec-----CCC-cEEEEecCCCcceeeecC----CCccCCcccCCC-CEEEeeCCCCceEEEEecC
Confidence 45678899999988765 344 244433334433333222 334467888877 3333322 2 55555432
Q ss_pred CCCCc---eeee-----eecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeee----ecccceeE
Q 013871 79 DFPKG---ILYR-----LRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRS----FFRCSTVQ 146 (434)
Q Consensus 79 ~~~~~---~~~~-----~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~----~~~~~~~~ 146 (434)
.-... .... +....|..+.+|++ +-.+++.+... ...+|.|--+.....+.+..... ........
T Consensus 414 g~~~~~~~~~~~v~~~~l~g~~I~~lrvSrD-G~R~Avi~~~~--g~~~V~va~V~R~~~G~P~~L~~~~~~~~~~~~~s 490 (573)
T PRK13614 414 GVAEGAQAPTVTLTADWLAGRTVKELRVSRE-GVRALVISEQN--GKSRVQVAGIVRNEDGTPRELTAPITLAADSDADT 490 (573)
T ss_pred CCcccccccceeecccccCCCeeEEEEECCC-ccEEEEEEEeC--CccEEEEEEEEeCCCCCeEEccCceecccCCCcce
Confidence 11000 0001 11224999999999 55666554321 12235444333211132222111 11246788
Q ss_pred EEECCCCCeEEEEE
Q 013871 147 LNWNRGSTGLLAVA 160 (434)
Q Consensus 147 ~~ws~~G~~l~~~~ 160 (434)
+.|..+++ |++++
T Consensus 491 l~W~~~~s-l~V~~ 503 (573)
T PRK13614 491 GAWVGDST-VVVTK 503 (573)
T ss_pred eEEcCCCE-EEEEe
Confidence 99999877 44544
No 479
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=42.59 E-value=14 Score=39.49 Aligned_cols=68 Identities=19% Similarity=0.438 Sum_probs=41.8
Q ss_pred eEEEECC---CCCeEEEEecCCCCCeEEEEEccC--CEEEEEeeCCCce-----------EEEECCCCCEEEEEEcCCce
Q 013871 240 NTVRWNP---KGKFLCLAGFGNLPGDMAFWDYVD--GKQLGTTRAECSV-----------TSEWSPDGRYFMTATTAPRL 303 (434)
Q Consensus 240 ~~i~~SP---~g~~l~~~~~~~~~g~i~iwd~~~--~~~i~~~~~~~~~-----------~~~wspdg~~l~tas~~prl 303 (434)
.-+.|.| +.-+++.+- .+|+|.+.+.+. .+.+.. ....++ .-..||||..|+++..
T Consensus 184 ~~V~wcp~~~~~~~ic~~~---~~~~i~lL~~~ra~~~l~rs-Hs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~---- 255 (1283)
T KOG1916|consen 184 QLVSWCPIAVNKVYICYGL---KGGEIRLLNINRALRSLFRS-HSQRVTDMAFFAEGVLKLASLSPDGTVFAWAIS---- 255 (1283)
T ss_pred ceeeecccccccceeeecc---CCCceeEeeechHHHHHHHh-cCCCcccHHHHhhchhhheeeCCCCcEEEEeec----
Confidence 4455555 455777665 345777654432 222222 111221 2358999999999999
Q ss_pred eeCCcEEEEee--cCc
Q 013871 304 QIDNGIKIFHH--NGS 317 (434)
Q Consensus 304 ~~D~~i~iw~~--~g~ 317 (434)
||.++.|.. +|+
T Consensus 256 --dG~v~f~Qiyi~g~ 269 (1283)
T KOG1916|consen 256 --DGSVGFYQIYITGK 269 (1283)
T ss_pred --CCccceeeeeeecc
Confidence 999999986 555
No 480
>PRK13615 lipoprotein LpqB; Provisional
Probab=42.27 E-value=4.1e+02 Score=27.53 Aligned_cols=75 Identities=13% Similarity=0.100 Sum_probs=48.3
Q ss_pred CCCeEEEEECcCCCEEEEEEcc-CCCeEEEEec---cc--cee----EEe--CCcCeeEEEECCCCCeEEEEecCCCCCe
Q 013871 195 EGPVHDVQWSYSGSEFAVVYGF-MPASATIFNK---KC--RPI----LEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGD 262 (434)
Q Consensus 195 ~~~i~~v~wspdg~~~av~~g~-~~~~v~l~d~---~~--~~~----~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~ 262 (434)
.++|..+..|+||-+++++... ..++|.+--+ .+ ..+ ..+ ..+.+.++.|..++.+++++.....+..
T Consensus 416 ~~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~~P~~L~~~p~~l~~~l~~v~sl~W~~~~~laVl~~~~~~~~~ 495 (557)
T PRK13615 416 TGRVVSLEVARDGARVLVQLETGAGPQLLVASIVRDGGVPTSLTTTPLELLASPGTPLDATWVDELDVATLTLAPDGERQ 495 (557)
T ss_pred CCeeEEEEeCCCccEEEEEEecCCCCEEEEEEEEeCCCcceEeeeccEEcccCcCcceeeEEcCCCEEEEEeccCCCCce
Confidence 5789999999999999987643 2235554321 12 122 122 2447789999999998887742223346
Q ss_pred EEEEEcc
Q 013871 263 MAFWDYV 269 (434)
Q Consensus 263 i~iwd~~ 269 (434)
+++..+.
T Consensus 496 v~~v~v~ 502 (557)
T PRK13615 496 VELHQVG 502 (557)
T ss_pred EEEEECC
Confidence 6776665
No 481
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=41.31 E-value=3.2e+02 Score=25.95 Aligned_cols=114 Identities=17% Similarity=0.154 Sum_probs=65.1
Q ss_pred EEEEECcCCCEEEEEEccCC------CeEEEEecccceeEEe-----------------CCcCeeEEEECCCCCeEEEEe
Q 013871 199 HDVQWSYSGSEFAVVYGFMP------ASATIFNKKCRPILEL-----------------GSGPYNTVRWNPKGKFLCLAG 255 (434)
Q Consensus 199 ~~v~wspdg~~~av~~g~~~------~~v~l~d~~~~~~~~~-----------------~~~~~~~i~~SP~g~~l~~~~ 255 (434)
.++++.++|..++. .... ..|..||..+..+..+ .......|+++|+|+.|.++.
T Consensus 88 Egi~~~~~g~~~is--~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~ 165 (326)
T PF13449_consen 88 EGIAVPPDGSFWIS--SEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAM 165 (326)
T ss_pred hHeEEecCCCEEEE--eCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEE
Confidence 46888667766653 3334 5888888775543332 123455799999999555543
Q ss_pred cCCC--CC-----------eEEEEEccC-C----EEEEEee-------CCCceEEEECCCCCEEEEEEcCCceeeCCcEE
Q 013871 256 FGNL--PG-----------DMAFWDYVD-G----KQLGTTR-------AECSVTSEWSPDGRYFMTATTAPRLQIDNGIK 310 (434)
Q Consensus 256 ~~~~--~g-----------~i~iwd~~~-~----~~i~~~~-------~~~~~~~~wspdg~~l~tas~~prl~~D~~i~ 310 (434)
-..+ ++ .|..||..+ + +....+. ...++.+.+-+|+++|+.=-.+-. ...+.++
T Consensus 166 E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~-~~~~~~r 244 (326)
T PF13449_consen 166 ESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSP-GTGNYKR 244 (326)
T ss_pred CccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCC-CccceEE
Confidence 2111 11 244456554 2 2233333 346677999999997776433111 1255677
Q ss_pred EEeec
Q 013871 311 IFHHN 315 (434)
Q Consensus 311 iw~~~ 315 (434)
|+.++
T Consensus 245 i~~v~ 249 (326)
T PF13449_consen 245 IYRVD 249 (326)
T ss_pred EEEEE
Confidence 77664
No 482
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=41.18 E-value=1.3e+02 Score=30.00 Aligned_cols=51 Identities=14% Similarity=0.208 Sum_probs=31.9
Q ss_pred CCeEEEEEccCCEEE-EEeeCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc
Q 013871 260 PGDMAFWDYVDGKQL-GTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS 317 (434)
Q Consensus 260 ~g~i~iwd~~~~~~i-~~~~~~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~ 317 (434)
.|++.++.....+.+ .......+..+++||.+.++++-. .++|+++.++..
T Consensus 337 ~G~L~~f~st~~~~lL~~~~~~~~~~~~~Sp~~~~Ll~e~-------~gki~~~~l~Nr 388 (733)
T COG4590 337 NGTLQSFYSTSEKLLLFERAYQAPQLVAMSPNQAYLLSED-------QGKIRLAQLENR 388 (733)
T ss_pred CCceeeeecccCcceehhhhhcCcceeeeCcccchheeec-------CCceEEEEecCC
Confidence 356666554333322 222223555689999999998754 578888887654
No 483
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=40.67 E-value=3.1e+02 Score=25.58 Aligned_cols=93 Identities=17% Similarity=0.319 Sum_probs=0.0
Q ss_pred EEEEecccceeEEeC---CcCeeEEEECCCCCeEEEEec---CCCCCeEEEEEccCCEEEEEee-------CCCceEEEE
Q 013871 221 ATIFNKKCRPILELG---SGPYNTVRWNPKGKFLCLAGF---GNLPGDMAFWDYVDGKQLGTTR-------AECSVTSEW 287 (434)
Q Consensus 221 v~l~d~~~~~~~~~~---~~~~~~i~~SP~g~~l~~~~~---~~~~g~i~iwd~~~~~~i~~~~-------~~~~~~~~w 287 (434)
+.+||....+-..++ .+.|+++.|..+.++++.|.+ ++....+..||.++..-...-. ++-.....-
T Consensus 18 lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~~~~ 97 (281)
T PF12768_consen 18 LCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTALTFI 97 (281)
T ss_pred EEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEEEEee
Q ss_pred CCCCCEEEEEEcCCceeeCCcEEEEeecCc
Q 013871 288 SPDGRYFMTATTAPRLQIDNGIKIFHHNGS 317 (434)
Q Consensus 288 spdg~~l~tas~~prl~~D~~i~iw~~~g~ 317 (434)
.-|+..+..++.. .++.-.|..++|.
T Consensus 98 ~~d~~~~~~aG~~----~~g~~~l~~~dGs 123 (281)
T PF12768_consen 98 SNDGSNFWVAGRS----ANGSTFLMKYDGS 123 (281)
T ss_pred ccCCceEEEecee----cCCCceEEEEcCC
No 484
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=40.42 E-value=4.2e+02 Score=27.08 Aligned_cols=33 Identities=18% Similarity=0.409 Sum_probs=21.7
Q ss_pred eeEEEECCCC---CeEEEEecCCCCCeEEEEEccCCEEE
Q 013871 239 YNTVRWNPKG---KFLCLAGFGNLPGDMAFWDYVDGKQL 274 (434)
Q Consensus 239 ~~~i~~SP~g---~~l~~~~~~~~~g~i~iwd~~~~~~i 274 (434)
+..++|+|+. ..|.+-..+| .|++||...-..+
T Consensus 168 l~Qa~WHP~S~~D~hL~iL~sdn---viRiy~lS~~tel 203 (741)
T KOG4460|consen 168 LKQAAWHPSSILDPHLVLLTSDN---VIRIYSLSEPTEL 203 (741)
T ss_pred eeeccccCCccCCceEEEEecCc---EEEEEecCCcchh
Confidence 4567888876 3555555444 8999998764433
No 485
>PRK13684 Ycf48-like protein; Provisional
Probab=40.23 E-value=3.4e+02 Score=25.92 Aligned_cols=63 Identities=16% Similarity=0.080 Sum_probs=36.5
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCC-cEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEE
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETG-EAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQ 73 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g-~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~ 73 (434)
+..+.++|+|.++++.. .+.+.. ....+ +.-...... ....+..+.+.++++.++.+..+.+.
T Consensus 175 ~~~i~~~~~g~~v~~g~------~G~i~~-s~~~gg~tW~~~~~~--~~~~l~~i~~~~~g~~~~vg~~G~~~ 238 (334)
T PRK13684 175 VRNLRRSPDGKYVAVSS------RGNFYS-TWEPGQTAWTPHQRN--SSRRLQSMGFQPDGNLWMLARGGQIR 238 (334)
T ss_pred EEEEEECCCCeEEEEeC------CceEEE-EcCCCCCeEEEeeCC--CcccceeeeEcCCCCEEEEecCCEEE
Confidence 45778889888887654 233322 22222 322222211 22455578899999988877777664
No 486
>PF14939 DCAF15_WD40: DDB1-and CUL4-substrate receptor 15, WD repeat
Probab=38.92 E-value=88 Score=27.55 Aligned_cols=39 Identities=10% Similarity=0.371 Sum_probs=26.1
Q ss_pred eEEecCCCcEEEEEecCCCCCCC--------cEEEEEcCCCcEEEEE
Q 013871 4 LLTCLRVGLIIQTFQKSSTPQEK--------NVILWKTETGEAVYQL 42 (434)
Q Consensus 4 ~l~fSP~g~~L~t~~~~~~~~d~--------~v~iWd~~~g~~~~~~ 42 (434)
.|-||.+|+||++.......+|. .+..|...-+..++.+
T Consensus 35 flGft~cGq~lLSYt~~~~~~~~~~~~~ykY~L~wW~F~p~~~l~~v 81 (211)
T PF14939_consen 35 FLGFTKCGQFLLSYTSSCDDDDSLFFSNYKYHLYWWNFNPHQKLRKV 81 (211)
T ss_pred EEeecccCCEEEEEEeccCcccccccccceEEEEEEEecCCCeEEEE
Confidence 47899999999998754332222 5677777666555443
No 487
>PRK13613 lipoprotein LpqB; Provisional
Probab=37.96 E-value=5e+02 Score=27.24 Aligned_cols=186 Identities=14% Similarity=0.127 Sum_probs=88.7
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcE----EEEEeecCcCCCCCCeeeecCCCcEEEEec--CC--eEE
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEA----VYQLFQKNMTKTTWPSIRFSSDEAVACRMA--TN--EIQ 73 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~----~~~~~~~~~~~~~~~~~~~S~d~~~la~~~--~~--~i~ 73 (434)
+.+++.|++|..++.... ....+.+..+..+.. ....... .....+.|..+|-.-..-. ++ .++
T Consensus 365 ~~s~avS~~g~~~A~v~~----~~~~l~vg~~~~~~~~~~~~~~~~~~----~~Lt~PS~d~~g~vWtvd~~~~~~~vl~ 436 (599)
T PRK13613 365 LRRVAVSRDESRAAGISA----DGDSVYVGSLTPGASIGVHSWGVTAD----GRLTSPSWDGRGDLWVVDRDPADPRLLW 436 (599)
T ss_pred ccceEEcCCCceEEEEcC----CCcEEEEeccCCCCccccccceeecc----CcccCCcCcCCCCEEEecCCCCCceEEE
Confidence 356788999998887651 123566665433322 1111111 2344667777663222111 11 255
Q ss_pred EEeCCCCCCceeeeeecC--CeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCC-cee---eeeecccceeEE
Q 013871 74 FFDTTDFPKGILYRLRVP--GVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQ-PLA---RRSFFRCSTVQL 147 (434)
Q Consensus 74 v~~~~~~~~~~~~~~~~~--~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~-~i~---~~~~~~~~~~~~ 147 (434)
+... ......+....+. .|..+.+|++ +-.+++.+.. +..++|.|--+.....+. .+. .....-.+...+
T Consensus 437 v~~~-~G~~~~V~~~~l~g~~I~~lrvSrD-G~RvAvv~~~--~g~~~v~va~V~R~~~G~~~l~~~~~l~~~l~~v~~~ 512 (599)
T PRK13613 437 LLQG-DGEPVEVRTPELDGHRVVAVRVARD-GVRVALIVEK--DGRRSLQIGRIVRDAKAVVSVEEFRSLAPELEDVTDM 512 (599)
T ss_pred EEcC-CCcEEEeeccccCCCEeEEEEECCC-ccEEEEEEec--CCCcEEEEEEEEeCCCCcEEeeccEEeccCCCcccee
Confidence 5543 2111111111222 4999999999 5666665432 222344443332211021 111 111122357789
Q ss_pred EECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCC
Q 013871 148 NWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGS 208 (434)
Q Consensus 148 ~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~ 208 (434)
.|..+++ |+++..... +...++++.++|.......+..-.++..++-..+.+
T Consensus 513 ~W~~~~s-L~Vlg~~~~--------~~~~v~~v~vdG~~~~~~~~~~v~~~~~ia~~~~~~ 564 (599)
T PRK13613 513 SWAGDSQ-LVVLGREEG--------GVQQARYVQVDGSTPPASAPAAVTGVESITASEDER 564 (599)
T ss_pred EEcCCCE-EEEEeccCC--------CCcceEEEecCCcCcccccccCCCCeeEEEecCCCC
Confidence 9999877 444432211 234578888887654322222234455555554444
No 488
>KOG4325 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.04 E-value=32 Score=28.44 Aligned_cols=20 Identities=50% Similarity=0.620 Sum_probs=13.9
Q ss_pred CccChhhhhhcchhhHHHHH
Q 013871 405 PEMSKNALRNKKKREKQKEK 424 (434)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~ 424 (434)
..+||++++|-||.++..+.
T Consensus 88 pglsktakRnlKkeek~qaq 107 (212)
T KOG4325|consen 88 PGLSKTAKRNLKKEEKLQAQ 107 (212)
T ss_pred ccchhHHHhhhhHHHHHHHH
Confidence 34789998877766665544
No 489
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=36.28 E-value=80 Score=17.59 Aligned_cols=15 Identities=13% Similarity=-0.208 Sum_probs=10.8
Q ss_pred ceEEecCCCcEEEEE
Q 013871 3 LLLTCLRVGLIIQTF 17 (434)
Q Consensus 3 ~~l~fSP~g~~L~t~ 17 (434)
..|+++++|+.+++=
T Consensus 5 ~gvav~~~g~i~VaD 19 (28)
T PF01436_consen 5 HGVAVDSDGNIYVAD 19 (28)
T ss_dssp EEEEEETTSEEEEEE
T ss_pred cEEEEeCCCCEEEEE
Confidence 467778888877763
No 490
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=34.15 E-value=96 Score=31.94 Aligned_cols=37 Identities=16% Similarity=0.269 Sum_probs=26.1
Q ss_pred CeeEEEECC----CCCeEEEEecCCCCCeEEEEEccCCEEEEEe
Q 013871 238 PYNTVRWNP----KGKFLCLAGFGNLPGDMAFWDYVDGKQLGTT 277 (434)
Q Consensus 238 ~~~~i~~SP----~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~ 277 (434)
....+..++ +..+|++.. .|++|++||+.+++++...
T Consensus 216 ~~~~~~~~~~~~~~~~~l~tl~---~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 216 VAASLAVSSSEINDDTFLFTLS---RDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp -EEEEEE-----ETTTEEEEEE---TTSEEEEEETTTTCEEEEE
T ss_pred ccceEEEecceeCCCCEEEEEe---CCCeEEEEECCCCeEEEEe
Confidence 345566666 566887777 5679999999999886655
No 491
>PHA03098 kelch-like protein; Provisional
Probab=32.36 E-value=2.4e+02 Score=28.83 Aligned_cols=53 Identities=13% Similarity=0.193 Sum_probs=28.7
Q ss_pred eEEEEecccceeEEeCC---cCeeEEEECCCCCeEEEEecCCCC-----CeEEEEEccCCE
Q 013871 220 SATIFNKKCRPILELGS---GPYNTVRWNPKGKFLCLAGFGNLP-----GDMAFWDYVDGK 272 (434)
Q Consensus 220 ~v~l~d~~~~~~~~~~~---~~~~~i~~SP~g~~l~~~~~~~~~-----g~i~iwd~~~~~ 272 (434)
.+..||...+.-..... ......+..-+++++++||....+ ..+++||..+.+
T Consensus 407 ~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~ 467 (534)
T PHA03098 407 TVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNK 467 (534)
T ss_pred eEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCc
Confidence 67888887554433321 111112223356777777754221 248899987653
No 492
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=32.20 E-value=53 Score=20.88 Aligned_cols=28 Identities=11% Similarity=0.140 Sum_probs=15.2
Q ss_pred CCCCCeEEEEecCCC---CCeEEEEEccCCE
Q 013871 245 NPKGKFLCLAGFGNL---PGDMAFWDYVDGK 272 (434)
Q Consensus 245 SP~g~~l~~~~~~~~---~g~i~iwd~~~~~ 272 (434)
.+++++++.||.+.. -.++.+||+++.+
T Consensus 10 ~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~ 40 (49)
T PF13418_consen 10 IGDNSIYVFGGRDSSGSPLNDLWIFDIETNT 40 (49)
T ss_dssp E-TTEEEEE--EEE-TEE---EEEEETTTTE
T ss_pred EeCCeEEEECCCCCCCcccCCEEEEECCCCE
Confidence 356777777775431 2478899988774
No 493
>PF02095 Extensin_1: Extensin-like protein repeat; InterPro: IPR003883 Extensins are plant cell-wall proteins; they can account for up to 20% of the dry weight of the cell wall. They are highly-glycosylated, possibly reflecting their interactions with cell-wall carbohydrates. Amongst their functions is cell wall strengthening in response to mechanical stress (e.g., during attack by pests, plant-bending in the wind, etc.). This repeat occurs within extensin-like proteins.; GO: 0005199 structural constituent of cell wall
Probab=32.08 E-value=25 Score=14.81 Aligned_cols=6 Identities=50% Similarity=1.447 Sum_probs=3.9
Q ss_pred CccCCC
Q 013871 381 AAYRPP 386 (434)
Q Consensus 381 ~~y~pp 386 (434)
..|.||
T Consensus 2 P~ykPp 7 (10)
T PF02095_consen 2 PVYKPP 7 (10)
T ss_pred CccCCC
Confidence 467776
No 494
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=31.29 E-value=2.9e+02 Score=22.55 Aligned_cols=74 Identities=11% Similarity=0.113 Sum_probs=37.7
Q ss_pred CcCeeEEE---ECC--CCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC-CceEEEE---CC-CCCEEEEEEcCCceee
Q 013871 236 SGPYNTVR---WNP--KGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-CSVTSEW---SP-DGRYFMTATTAPRLQI 305 (434)
Q Consensus 236 ~~~~~~i~---~SP--~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-~~~~~~w---sp-dg~~l~tas~~prl~~ 305 (434)
...+++|+ |.| +...|++|+. ..|..||+.+...+.--+.+ .+..+.+ .. +...+++++
T Consensus 47 n~~italaaG~l~~~~~~D~LliGt~----t~llaYDV~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGG------- 115 (136)
T PF14781_consen 47 NQEITALAAGRLKPDDGRDCLLIGTQ----TSLLAYDVENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGG------- 115 (136)
T ss_pred CCceEEEEEEecCCCCCcCEEEEecc----ceEEEEEcccCchhhhhhCccceeEEEEEecCCCCCcEEEECc-------
Confidence 44455554 432 2346666643 37999999876433222211 2222222 22 334445544
Q ss_pred CCcEEEEeecCceee
Q 013871 306 DNGIKIFHHNGSLFF 320 (434)
Q Consensus 306 D~~i~iw~~~g~~~~ 320 (434)
.-.|.-||.+|..++
T Consensus 116 ncsi~Gfd~~G~e~f 130 (136)
T PF14781_consen 116 NCSIQGFDYEGNEIF 130 (136)
T ss_pred eEEEEEeCCCCcEEE
Confidence 456777777776544
No 495
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=31.09 E-value=1.6e+02 Score=30.32 Aligned_cols=18 Identities=17% Similarity=0.023 Sum_probs=14.2
Q ss_pred CCCCeeeecCCCcEEEEe
Q 013871 50 TTWPSIRFSSDEAVACRM 67 (434)
Q Consensus 50 ~~~~~~~~S~d~~~la~~ 67 (434)
..+..+.|+||++.|...
T Consensus 502 aE~tG~~fspDg~tlFvn 519 (524)
T PF05787_consen 502 AEITGPCFSPDGRTLFVN 519 (524)
T ss_pred cccccceECCCCCEEEEE
Confidence 677789999999976543
No 496
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=30.98 E-value=1.2e+02 Score=18.05 Aligned_cols=32 Identities=6% Similarity=-0.147 Sum_probs=23.9
Q ss_pred CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc
Q 013871 281 CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS 317 (434)
Q Consensus 281 ~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~ 317 (434)
.+..++|+|.++.|..+... .+.|...+++|.
T Consensus 10 ~~~~la~d~~~~~lYw~D~~-----~~~I~~~~~~g~ 41 (43)
T smart00135 10 HPNGLAVDWIEGRLYWTDWG-----LDVIEVANLDGT 41 (43)
T ss_pred CcCEEEEeecCCEEEEEeCC-----CCEEEEEeCCCC
Confidence 44568999999988887764 467777777764
No 497
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=30.44 E-value=3.2e+02 Score=28.10 Aligned_cols=78 Identities=14% Similarity=0.236 Sum_probs=0.0
Q ss_pred CeEEEEec-ccceeEEe-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceE---EEECCCCCE
Q 013871 219 ASATIFNK-KCRPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVT---SEWSPDGRY 293 (434)
Q Consensus 219 ~~v~l~d~-~~~~~~~~-~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~---~~wspdg~~ 293 (434)
+.+.-+|+ .++..-.. ...+...-...-.|.+++.+. .+|.++.+|.++++.+..++-..... +.+.-||+.
T Consensus 441 g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t~g~lvf~g~---~~G~l~a~D~~TGe~lw~~~~g~~~~a~P~ty~~~G~q 517 (527)
T TIGR03075 441 GSLIAWDPITGKIVWEHKEDFPLWGGVLATAGDLVFYGT---LEGYFKAFDAKTGEELWKFKTGSGIVGPPVTYEQDGKQ 517 (527)
T ss_pred eeEEEEeCCCCceeeEecCCCCCCCcceEECCcEEEEEC---CCCeEEEEECCCCCEeEEEeCCCCceecCEEEEeCCEE
Q ss_pred EEEEEc
Q 013871 294 FMTATT 299 (434)
Q Consensus 294 l~tas~ 299 (434)
.+....
T Consensus 518 Yv~~~~ 523 (527)
T TIGR03075 518 YVAVLS 523 (527)
T ss_pred EEEEEe
No 498
>PF10411 DsbC_N: Disulfide bond isomerase protein N-terminus; InterPro: IPR018950 This is the N-terminal domain of the disulphide bond isomerase DsbC. The whole molecule is V-shaped, where each arm is a DsbC monomer of two domains linked by a hinge; and the N-termini of each monomer join to form the dimer interface at the base of the V, so are vital for dimerisation []. DsbC is required for disulphide bond formation and functions as a disulphide bond isomerase during oxidative protein-folding in bacterial periplasm. It also has chaperone activity []. ; PDB: 1EEJ_B 2IYJ_A 1TJD_A 1JZD_B 1JZO_A 1G0T_B 1T3B_A.
Probab=28.73 E-value=73 Score=21.46 Aligned_cols=13 Identities=15% Similarity=-0.125 Sum_probs=7.3
Q ss_pred EEecCCCcEEEEE
Q 013871 5 LTCLRVGLIIQTF 17 (434)
Q Consensus 5 l~fSP~g~~L~t~ 17 (434)
+-.++||+||+.+
T Consensus 36 ~Y~~~dg~yli~G 48 (57)
T PF10411_consen 36 LYVDEDGRYLIQG 48 (57)
T ss_dssp EEEETTSSEEEES
T ss_pred EEEcCCCCEEEEe
Confidence 3456666666653
No 499
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=28.51 E-value=1.3e+02 Score=31.98 Aligned_cols=88 Identities=15% Similarity=0.288 Sum_probs=55.1
Q ss_pred CeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEE--EEEeeCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec
Q 013871 238 PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQ--LGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN 315 (434)
Q Consensus 238 ~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~--i~~~~~~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~ 315 (434)
.+.++.-+|.|+-++++. .+|.|.+|+....+. |.....+ .-.+.|...| |+++++ |+.+.-|.-+
T Consensus 16 ~~~aiqshp~~~s~v~~~---~d~si~lfn~~~r~qski~~~~~p-~~nlv~tnhg--l~~~ts------drr~la~~~d 83 (1636)
T KOG3616|consen 16 FTTAIQSHPGGQSFVLAH---QDGSIILFNFIPRRQSKICEEAKP-KENLVFTNHG--LVTATS------DRRALAWKED 83 (1636)
T ss_pred eeeeeeecCCCceEEEEe---cCCcEEEEeecccchhhhhhhcCC-ccceeeeccc--eEEEec------cchhheeecc
Confidence 355677789999999988 567999999776544 3332222 2224454443 677777 8888888888
Q ss_pred Cceeeeeec-----ccceeeEEEcCCC
Q 013871 316 GSLFFKKMF-----DKLFQAEWKPVSP 337 (434)
Q Consensus 316 g~~~~~~~~-----~~~~~~~w~p~~~ 337 (434)
|-...+..+ .++....-.|...
T Consensus 84 gvvqqqfdyndqsekefss~~cdptaq 110 (1636)
T KOG3616|consen 84 GVVQQQFDYNDQSEKEFSSILCDPTAQ 110 (1636)
T ss_pred CcchhhccccchhhhhccceecCchhh
Confidence 754433322 2455555555444
No 500
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=28.03 E-value=1.4e+02 Score=17.87 Aligned_cols=22 Identities=23% Similarity=0.104 Sum_probs=18.5
Q ss_pred CCCeEEEEEccCCEEEEEeeCC
Q 013871 259 LPGDMAFWDYVDGKQLGTTRAE 280 (434)
Q Consensus 259 ~~g~i~iwd~~~~~~i~~~~~~ 280 (434)
.+|.|+-.|.++|+.+..++..
T Consensus 8 ~~g~l~AlD~~TG~~~W~~~~~ 29 (38)
T PF01011_consen 8 PDGYLYALDAKTGKVLWKFQTG 29 (38)
T ss_dssp TTSEEEEEETTTTSEEEEEESS
T ss_pred CCCEEEEEECCCCCEEEeeeCC
Confidence 5689999999999998887654
Done!