Query 013871
Match_columns 434
No_of_seqs 382 out of 2224
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 18:40:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013871.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013871hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ow8_A WD repeat-containing pr 100.0 1.8E-32 6.1E-37 261.0 38.3 274 2-314 35-319 (321)
2 1got_B GT-beta; complex (GTP-b 100.0 2.7E-32 9.4E-37 261.6 37.9 271 2-313 58-340 (340)
3 1vyh_C Platelet-activating fac 100.0 6E-33 2.1E-37 273.3 33.6 272 2-314 111-409 (410)
4 4g56_B MGC81050 protein; prote 100.0 2.4E-33 8.3E-38 271.0 26.5 285 2-316 45-343 (357)
5 2pbi_B Guanine nucleotide-bind 100.0 3.7E-31 1.3E-35 255.3 40.3 272 2-313 67-354 (354)
6 3iz6_a 40S ribosomal protein R 100.0 2.4E-32 8.3E-37 266.2 32.1 278 2-317 69-376 (380)
7 3fm0_A Protein CIAO1; WDR39,SG 100.0 2.1E-31 7.3E-36 256.0 34.6 283 2-317 19-336 (345)
8 4gqb_B Methylosome protein 50; 100.0 8E-32 2.7E-36 259.0 30.2 274 2-317 33-332 (344)
9 2ymu_A WD-40 repeat protein; u 100.0 6.5E-31 2.2E-35 269.2 38.4 297 2-343 265-568 (577)
10 2ynn_A Coatomer subunit beta'; 100.0 7.4E-31 2.5E-35 247.7 35.7 276 2-316 16-302 (304)
11 1nr0_A Actin interacting prote 100.0 7.1E-31 2.4E-35 271.6 37.1 305 2-342 62-509 (611)
12 1nr0_A Actin interacting prote 100.0 1.2E-30 4.1E-35 269.9 38.8 296 2-336 21-379 (611)
13 3zwl_B Eukaryotic translation 100.0 1.1E-29 3.9E-34 243.9 39.7 286 2-317 35-347 (369)
14 1erj_A Transcriptional repress 100.0 3.8E-30 1.3E-34 251.7 36.2 283 2-316 67-389 (393)
15 4ery_A WD repeat-containing pr 100.0 1.3E-29 4.4E-34 239.5 37.5 275 2-315 26-311 (312)
16 3frx_A Guanine nucleotide-bind 100.0 1.3E-29 4.5E-34 240.8 36.2 273 2-315 20-316 (319)
17 1gxr_A ESG1, transducin-like e 100.0 1.5E-29 5.2E-34 240.1 35.0 273 2-314 54-335 (337)
18 2ymu_A WD-40 repeat protein; u 100.0 2.6E-29 9E-34 257.2 38.1 297 2-343 224-527 (577)
19 1r5m_A SIR4-interacting protei 100.0 1.4E-29 4.9E-34 248.0 33.3 301 2-342 48-412 (425)
20 4h5i_A Guanine nucleotide-exch 100.0 8.3E-29 2.9E-33 239.9 36.2 282 2-316 17-343 (365)
21 1r5m_A SIR4-interacting protei 100.0 2.5E-29 8.5E-34 246.2 32.9 272 2-316 111-425 (425)
22 1gxr_A ESG1, transducin-like e 100.0 7.8E-29 2.7E-33 235.2 35.2 301 2-342 12-324 (337)
23 4aow_A Guanine nucleotide-bind 100.0 2.3E-28 8E-33 232.6 37.3 276 2-315 41-336 (340)
24 2pm9_A Protein WEB1, protein t 100.0 3.5E-30 1.2E-34 252.4 24.3 284 2-317 15-338 (416)
25 4gga_A P55CDC, cell division c 100.0 4.3E-28 1.5E-32 239.1 38.5 280 2-316 108-395 (420)
26 2xzm_R RACK1; ribosome, transl 100.0 1.3E-28 4.6E-33 236.1 33.4 272 2-315 24-339 (343)
27 2hes_X YDR267CP; beta-propelle 100.0 4.8E-28 1.6E-32 231.1 34.7 278 2-316 17-328 (330)
28 2pm9_A Protein WEB1, protein t 100.0 2.3E-29 7.8E-34 246.6 23.3 279 2-316 70-414 (416)
29 4ggc_A P55CDC, cell division c 100.0 3.2E-27 1.1E-31 222.5 37.0 278 3-315 29-314 (318)
30 3ei3_B DNA damage-binding prot 100.0 3.9E-28 1.3E-32 235.9 30.9 275 2-316 76-382 (383)
31 3ow8_A WD repeat-containing pr 100.0 7.1E-28 2.4E-32 229.2 30.7 263 48-342 31-308 (321)
32 3dm0_A Maltose-binding peripla 100.0 9.3E-28 3.2E-32 251.9 34.6 275 1-315 384-692 (694)
33 2ynn_A Coatomer subunit beta'; 100.0 2E-27 6.8E-32 224.1 33.3 265 39-338 6-284 (304)
34 3vl1_A 26S proteasome regulato 100.0 2.5E-29 8.4E-34 247.1 20.6 304 2-337 59-398 (420)
35 3sfz_A APAF-1, apoptotic pepti 100.0 2E-27 6.9E-32 264.7 37.0 306 2-336 618-1056(1249)
36 3i2n_A WD repeat-containing pr 100.0 2.4E-27 8.1E-32 227.0 31.7 280 2-316 21-353 (357)
37 4aez_A CDC20, WD repeat-contai 100.0 5.8E-27 2E-31 229.5 34.2 277 3-317 97-381 (401)
38 1sq9_A Antiviral protein SKI8; 100.0 4E-27 1.4E-31 229.3 32.8 274 2-316 19-395 (397)
39 4e54_B DNA damage-binding prot 100.0 1.2E-27 4.2E-32 237.0 28.0 281 2-316 122-430 (435)
40 3mkq_A Coatomer beta'-subunit; 100.0 4.2E-27 1.4E-31 250.6 34.1 274 2-314 16-300 (814)
41 1got_B GT-beta; complex (GTP-b 100.0 1.7E-26 5.7E-31 221.3 34.6 273 37-342 46-330 (340)
42 1vyh_C Platelet-activating fac 100.0 5.7E-27 1.9E-31 230.6 32.0 263 48-342 107-398 (410)
43 3odt_A Protein DOA1; ubiquitin 100.0 2.5E-26 8.7E-31 215.7 34.9 267 2-317 21-297 (313)
44 1k8k_C P40, ARP2/3 complex 41 100.0 3.3E-27 1.1E-31 227.5 29.4 274 2-315 11-360 (372)
45 4gqb_B Methylosome protein 50; 100.0 3.7E-27 1.3E-31 226.4 29.2 276 27-341 15-316 (344)
46 3k26_A Polycomb protein EED; W 100.0 2.7E-27 9.2E-32 227.3 27.9 276 2-315 21-365 (366)
47 2pbi_B Guanine nucleotide-bind 100.0 9.6E-26 3.3E-30 217.4 36.5 274 37-342 55-344 (354)
48 3iz6_a 40S ribosomal protein R 100.0 4E-27 1.4E-31 229.2 26.1 290 26-343 46-363 (380)
49 2oaj_A Protein SNI1; WD40 repe 100.0 9E-27 3.1E-31 250.6 31.2 311 2-342 61-648 (902)
50 4a11_B DNA excision repair pro 100.0 3.5E-26 1.2E-30 222.8 32.0 281 2-318 46-367 (408)
51 4g56_B MGC81050 protein; prote 100.0 5.4E-27 1.9E-31 226.4 25.6 292 5-342 11-330 (357)
52 3sfz_A APAF-1, apoptotic pepti 100.0 7.9E-27 2.7E-31 259.9 30.2 314 2-343 746-1197(1249)
53 3fm0_A Protein CIAO1; WDR39,SG 100.0 3E-26 1E-30 220.0 30.0 275 37-341 6-320 (345)
54 3dw8_B Serine/threonine-protei 100.0 3.6E-26 1.2E-30 226.2 31.2 273 2-313 31-443 (447)
55 3bws_A Protein LP49; two-domai 100.0 1.5E-25 5.2E-30 221.0 33.6 290 2-316 125-432 (433)
56 2pm7_B Protein transport prote 100.0 8E-26 2.7E-30 212.4 30.1 236 2-315 12-284 (297)
57 3dwl_C Actin-related protein 2 100.0 2.2E-27 7.5E-32 229.8 19.6 238 2-269 14-280 (377)
58 1pgu_A Actin interacting prote 100.0 2.7E-25 9.1E-30 228.6 35.8 305 2-342 163-601 (615)
59 4ery_A WD repeat-containing pr 100.0 4.3E-25 1.5E-29 208.4 34.3 263 48-342 22-297 (312)
60 2hqs_A Protein TOLB; TOLB, PAL 100.0 2.5E-25 8.5E-30 219.2 33.5 305 3-336 66-409 (415)
61 1erj_A Transcriptional repress 100.0 2.6E-25 8.8E-30 217.4 33.2 254 49-335 64-363 (393)
62 3mmy_A MRNA export factor; mRN 100.0 7.8E-26 2.7E-30 217.0 29.0 262 2-299 42-335 (368)
63 1pgu_A Actin interacting prote 99.9 3.7E-25 1.3E-29 227.5 35.5 292 2-335 21-349 (615)
64 3vl1_A 26S proteasome regulato 99.9 9.6E-26 3.3E-30 221.4 28.7 273 3-316 101-419 (420)
65 2j04_B YDR362CP, TAU91; beta p 99.9 2.8E-26 9.5E-31 231.9 25.2 284 2-320 136-521 (524)
66 2xzm_R RACK1; ribosome, transl 99.9 3.4E-25 1.2E-29 212.4 31.0 269 38-342 13-327 (343)
67 3bg1_A Protein SEC13 homolog; 99.9 7.4E-26 2.5E-30 214.6 25.3 252 2-315 16-292 (316)
68 3f3f_A Nucleoporin SEH1; struc 99.9 3.2E-25 1.1E-29 210.4 28.5 247 2-316 14-337 (351)
69 3v7d_B Cell division control p 99.9 2.3E-24 7.8E-29 214.7 35.4 288 2-333 125-442 (464)
70 3frx_A Guanine nucleotide-bind 99.9 3.5E-24 1.2E-28 203.3 35.0 266 40-342 11-304 (319)
71 1yfq_A Cell cycle arrest prote 99.9 1.8E-24 6.2E-29 206.0 32.3 268 2-313 14-321 (342)
72 3zwl_B Eukaryotic translation 99.9 5.6E-24 1.9E-28 204.1 35.8 269 48-342 31-333 (369)
73 1l0q_A Surface layer protein; 99.9 8.8E-24 3E-28 205.5 37.3 272 13-321 4-281 (391)
74 2oaj_A Protein SNI1; WD40 repe 99.9 2.2E-25 7.5E-30 239.8 28.2 220 2-256 20-296 (902)
75 3gre_A Serine/threonine-protei 99.9 1.5E-25 5.1E-30 221.5 22.5 274 2-313 66-437 (437)
76 4aez_A CDC20, WD repeat-contai 99.9 2.3E-24 7.8E-29 211.0 29.5 244 2-277 137-387 (401)
77 3mkq_A Coatomer beta'-subunit; 99.9 3.8E-24 1.3E-28 227.8 33.5 298 2-342 58-410 (814)
78 1k8k_C P40, ARP2/3 complex 41 99.9 4E-24 1.4E-28 205.9 30.6 236 50-316 9-274 (372)
79 3jrp_A Fusion protein of prote 99.9 1.5E-24 5.2E-29 209.0 27.2 236 2-315 14-286 (379)
80 4aow_A Guanine nucleotide-bind 99.9 2.5E-23 8.4E-28 197.8 33.4 282 27-342 17-324 (340)
81 2hes_X YDR267CP; beta-propelle 99.9 1.2E-23 4.2E-28 200.5 31.0 275 35-342 3-315 (330)
82 2vdu_B TRNA (guanine-N(7)-)-me 99.9 3.9E-23 1.3E-27 205.5 35.7 284 2-315 7-390 (450)
83 3vu4_A KMHSV2; beta-propeller 99.9 7.9E-24 2.7E-28 204.0 29.6 245 30-316 3-271 (355)
84 3dw8_B Serine/threonine-protei 99.9 1.7E-24 6E-29 214.0 25.1 243 50-317 29-374 (447)
85 2aq5_A Coronin-1A; WD40 repeat 99.9 4.3E-24 1.5E-28 209.0 27.4 276 3-319 38-345 (402)
86 3vu4_A KMHSV2; beta-propeller 99.9 2.9E-23 9.9E-28 200.1 32.8 265 2-315 22-335 (355)
87 2ecf_A Dipeptidyl peptidase IV 99.9 2.7E-23 9.3E-28 219.2 35.4 314 2-341 39-441 (741)
88 4h5i_A Guanine nucleotide-exch 99.9 1.8E-23 6.2E-28 202.3 28.1 202 2-270 136-343 (365)
89 3ei3_B DNA damage-binding prot 99.9 7.3E-24 2.5E-28 205.7 24.9 277 30-342 57-370 (383)
90 3dm0_A Maltose-binding peripla 99.9 2.8E-23 9.5E-28 217.9 31.2 264 48-342 381-680 (694)
91 2xyi_A Probable histone-bindin 99.9 4.3E-23 1.5E-27 204.0 30.4 246 49-320 128-414 (430)
92 4gga_A P55CDC, cell division c 99.9 4.1E-23 1.4E-27 203.4 29.3 242 2-272 150-397 (420)
93 2j04_A TAU60, YPL007P, hypothe 99.9 3.5E-24 1.2E-28 213.2 21.4 250 2-314 18-295 (588)
94 1sq9_A Antiviral protein SKI8; 99.9 1.4E-22 4.9E-27 197.0 32.0 260 48-337 15-367 (397)
95 2vdu_B TRNA (guanine-N(7)-)-me 99.9 1.4E-22 4.9E-27 201.4 32.0 253 51-335 6-365 (450)
96 2ovr_B FBW7, F-BOX/WD repeat p 99.9 4.3E-22 1.5E-26 197.4 35.2 283 6-341 124-424 (445)
97 1p22_A F-BOX/WD-repeat protein 99.9 9.2E-23 3.1E-27 201.8 30.1 260 6-317 138-415 (435)
98 3i2n_A WD repeat-containing pr 99.9 9.5E-23 3.2E-27 194.9 28.2 262 48-340 17-337 (357)
99 1xfd_A DIP, dipeptidyl aminope 99.9 2.4E-23 8.3E-28 218.9 25.2 312 2-340 19-425 (723)
100 3odt_A Protein DOA1; ubiquitin 99.9 8.6E-22 3E-26 184.7 32.4 262 37-337 9-279 (313)
101 3dwl_C Actin-related protein 2 99.9 1E-23 3.4E-28 204.0 19.4 236 50-315 12-280 (377)
102 3bws_A Protein LP49; two-domai 99.9 8.5E-22 2.9E-26 194.1 33.6 313 3-342 64-418 (433)
103 1l0q_A Surface layer protein; 99.9 3.1E-21 1.1E-25 187.4 36.9 246 2-280 34-285 (391)
104 4ggc_A P55CDC, cell division c 99.9 9.7E-22 3.3E-26 184.9 30.8 241 2-271 70-316 (318)
105 3gre_A Serine/threonine-protei 99.9 5.1E-23 1.8E-27 203.3 22.7 265 6-315 34-358 (437)
106 2xyi_A Probable histone-bindin 99.9 3.7E-22 1.3E-26 197.3 28.9 241 2-270 131-410 (430)
107 4gq1_A NUP37; propeller, trans 99.9 9.4E-24 3.2E-28 206.4 16.9 260 4-316 94-389 (393)
108 3u4y_A Uncharacterized protein 99.9 8E-21 2.7E-25 180.2 36.5 284 5-320 3-308 (331)
109 4e54_B DNA damage-binding prot 99.9 7.7E-23 2.6E-27 202.5 23.2 268 50-342 120-418 (435)
110 3k26_A Polycomb protein EED; W 99.9 8.8E-23 3E-27 195.6 21.8 233 2-270 72-366 (366)
111 2ovr_B FBW7, F-BOX/WD repeat p 99.9 4.9E-21 1.7E-25 189.8 35.0 264 2-317 162-443 (445)
112 2aq5_A Coronin-1A; WD40 repeat 99.9 1.3E-22 4.5E-27 198.4 23.0 239 2-272 84-344 (402)
113 3lrv_A PRE-mRNA-splicing facto 99.9 3.8E-22 1.3E-26 191.0 25.6 266 6-318 43-335 (343)
114 2j04_B YDR362CP, TAU91; beta p 99.9 1.8E-22 6E-27 204.1 23.9 259 50-337 134-456 (524)
115 3jro_A Fusion protein of prote 99.9 6.8E-23 2.3E-27 216.8 21.6 236 2-315 12-284 (753)
116 1yfq_A Cell cycle arrest prote 99.9 7.4E-22 2.5E-26 187.8 26.2 257 48-342 10-310 (342)
117 3pe7_A Oligogalacturonate lyas 99.9 1.4E-21 4.8E-26 189.7 28.1 291 4-315 40-381 (388)
118 2z3z_A Dipeptidyl aminopeptida 99.9 7.2E-21 2.5E-25 199.7 34.9 291 2-318 84-437 (706)
119 3v7d_B Cell division control p 99.9 8.6E-21 2.9E-25 188.8 33.2 255 2-299 165-451 (464)
120 2j04_A TAU60, YPL007P, hypothe 99.9 4.7E-23 1.6E-27 205.1 16.6 246 2-300 88-351 (588)
121 2ojh_A Uncharacterized protein 99.9 7.7E-21 2.6E-25 176.1 29.5 256 23-300 19-292 (297)
122 4a11_B DNA excision repair pro 99.9 3.6E-21 1.2E-25 187.2 28.6 273 2-315 102-404 (408)
123 1xfd_A DIP, dipeptidyl aminope 99.9 4.2E-21 1.5E-25 201.8 30.4 287 2-301 63-431 (723)
124 1nir_A Nitrite reductase; hemo 99.9 5.6E-21 1.9E-25 194.3 29.3 302 6-341 144-495 (543)
125 3vgz_A Uncharacterized protein 99.9 1.1E-19 3.9E-24 173.5 36.6 272 2-299 43-333 (353)
126 1nir_A Nitrite reductase; hemo 99.9 3.3E-20 1.1E-24 188.7 33.8 292 2-324 181-523 (543)
127 2ecf_A Dipeptidyl peptidase IV 99.9 6.1E-21 2.1E-25 201.2 27.9 291 2-319 111-462 (741)
128 2pm7_B Protein transport prote 99.9 1.5E-20 5.2E-25 176.3 27.5 227 88-343 7-273 (297)
129 2w18_A PALB2, fancn, partner a 99.9 3.5E-20 1.2E-24 173.8 27.8 258 25-314 62-355 (356)
130 1ri6_A Putative isomerase YBHE 99.9 4E-19 1.4E-23 168.7 34.7 294 10-336 3-334 (343)
131 2hqs_A Protein TOLB; TOLB, PAL 99.9 1.1E-19 3.8E-24 178.8 31.1 261 10-293 142-411 (415)
132 2z3z_A Dipeptidyl aminopeptida 99.9 1.1E-19 3.8E-24 190.6 31.2 314 2-341 28-417 (706)
133 3o4h_A Acylamino-acid-releasin 99.9 2.6E-20 8.9E-25 191.2 24.9 271 2-316 24-315 (582)
134 3mmy_A MRNA export factor; mRN 99.9 7E-20 2.4E-24 175.3 25.7 273 32-343 25-334 (368)
135 1k32_A Tricorn protease; prote 99.9 1.1E-19 3.7E-24 199.1 30.1 307 2-341 109-488 (1045)
136 4a5s_A Dipeptidyl peptidase 4 99.9 1.8E-19 6.1E-24 190.3 30.5 315 3-339 20-430 (740)
137 1pby_B Quinohemoprotein amine 99.9 4.3E-19 1.5E-23 168.0 30.1 269 12-321 2-316 (337)
138 1k32_A Tricorn protease; prote 99.9 9.6E-20 3.3E-24 199.5 29.0 291 2-339 206-525 (1045)
139 3bg1_A Protein SEC13 homolog; 99.8 5.8E-20 2E-24 173.9 20.8 226 87-342 10-280 (316)
140 3jrp_A Fusion protein of prote 99.8 3.9E-19 1.3E-23 171.0 26.2 228 85-342 6-274 (379)
141 1z68_A Fibroblast activation p 99.8 1.6E-19 5.4E-24 189.9 25.0 315 4-340 20-425 (719)
142 3scy_A Hypothetical bacterial 99.8 3.7E-17 1.3E-21 157.1 39.5 301 6-333 8-360 (361)
143 2ojh_A Uncharacterized protein 99.8 3.2E-19 1.1E-23 165.1 23.0 230 2-258 44-293 (297)
144 3lrv_A PRE-mRNA-splicing facto 99.8 9.5E-20 3.3E-24 174.3 19.6 243 56-334 43-309 (343)
145 3f3f_A Nucleoporin SEH1; struc 99.8 8E-19 2.7E-23 166.1 25.7 210 2-273 60-340 (351)
146 3c5m_A Oligogalacturonate lyas 99.8 3.2E-19 1.1E-23 173.1 23.2 291 2-314 38-380 (396)
147 1jmx_B Amine dehydrogenase; ox 99.8 6.7E-18 2.3E-22 160.7 31.5 276 3-321 3-331 (349)
148 1z68_A Fibroblast activation p 99.8 5.7E-19 2E-23 185.7 24.6 296 2-317 62-445 (719)
149 3hfq_A Uncharacterized protein 99.8 4.8E-17 1.6E-21 155.4 35.6 264 24-315 14-316 (347)
150 3vgz_A Uncharacterized protein 99.8 2.2E-17 7.6E-22 157.4 31.0 261 53-342 44-331 (353)
151 3u4y_A Uncharacterized protein 99.8 1.3E-17 4.5E-22 157.9 29.0 239 4-273 44-307 (331)
152 1p22_A F-BOX/WD-repeat protein 99.8 2E-17 6.8E-22 163.4 30.4 247 50-342 134-401 (435)
153 3pe7_A Oligogalacturonate lyas 99.8 3.7E-18 1.3E-22 165.5 24.0 302 30-341 14-367 (388)
154 1pby_B Quinohemoprotein amine 99.8 2.6E-17 9E-22 155.6 27.8 252 2-280 36-320 (337)
155 3hfq_A Uncharacterized protein 99.8 2.3E-16 7.9E-21 150.6 33.6 247 2-274 42-323 (347)
156 1ri6_A Putative isomerase YBHE 99.8 5.5E-17 1.9E-21 153.8 28.7 260 2-291 40-334 (343)
157 3jro_A Fusion protein of prote 99.8 8.8E-18 3E-22 177.7 25.3 227 86-342 5-272 (753)
158 4gq1_A NUP37; propeller, trans 99.8 2.8E-18 9.7E-23 167.4 18.2 211 2-269 139-388 (393)
159 4a5s_A Dipeptidyl peptidase 4 99.8 2.1E-16 7.1E-21 166.9 31.2 291 4-315 66-448 (740)
160 3o4h_A Acylamino-acid-releasin 99.8 8.9E-18 3E-22 172.3 20.2 255 51-341 23-298 (582)
161 2w18_A PALB2, fancn, partner a 99.8 6.6E-17 2.2E-21 151.6 23.8 215 2-268 114-355 (356)
162 3c5m_A Oligogalacturonate lyas 99.8 7.3E-17 2.5E-21 156.4 21.5 290 30-341 14-367 (396)
163 1jof_A Carboxy-CIS,CIS-muconat 99.7 2E-15 7E-20 145.5 30.0 272 26-319 14-344 (365)
164 1jof_A Carboxy-CIS,CIS-muconat 99.7 5.7E-15 1.9E-19 142.4 30.8 243 2-271 42-342 (365)
165 3scy_A Hypothetical bacterial 99.7 2E-14 7E-19 137.9 33.8 261 2-288 52-360 (361)
166 2gop_A Trilobed protease; beta 99.7 1E-14 3.4E-19 139.0 29.7 271 2-316 17-331 (347)
167 3azo_A Aminopeptidase; POP fam 99.7 4.8E-15 1.7E-19 154.1 28.3 290 2-314 26-365 (662)
168 1jmx_B Amine dehydrogenase; ox 99.7 4.9E-14 1.7E-18 133.8 29.8 245 2-280 45-335 (349)
169 2xdw_A Prolyl endopeptidase; a 99.7 1.4E-13 4.8E-18 144.5 32.3 292 8-316 80-414 (710)
170 2oit_A Nucleoporin 214KDA; NH2 99.6 6E-15 2E-19 145.8 18.8 137 194-339 91-255 (434)
171 2xdw_A Prolyl endopeptidase; a 99.6 1.9E-13 6.5E-18 143.5 30.7 255 2-272 127-416 (710)
172 2oiz_A Aromatic amine dehydrog 99.6 2E-13 6.8E-18 131.5 28.2 293 9-337 13-360 (361)
173 2oiz_A Aromatic amine dehydrog 99.6 7.5E-13 2.6E-17 127.4 30.2 264 4-292 54-360 (361)
174 2oit_A Nucleoporin 214KDA; NH2 99.6 1.2E-13 4E-18 136.5 21.7 162 142-316 93-278 (434)
175 1qks_A Cytochrome CD1 nitrite 99.6 1.9E-11 6.6E-16 124.2 37.4 290 2-321 199-544 (567)
176 2gop_A Trilobed protease; beta 99.6 6.4E-13 2.2E-17 126.4 24.6 236 2-267 61-330 (347)
177 2dg1_A DRP35, lactonase; beta 99.6 3.6E-12 1.2E-16 120.6 28.7 270 2-299 8-299 (333)
178 2bkl_A Prolyl endopeptidase; m 99.6 1.4E-12 4.7E-17 136.6 27.9 287 7-316 75-397 (695)
179 1qks_A Cytochrome CD1 nitrite 99.5 1.7E-11 5.7E-16 124.6 32.5 301 9-342 165-520 (567)
180 3fvz_A Peptidyl-glycine alpha- 99.5 6.7E-12 2.3E-16 119.0 27.9 254 2-318 26-324 (329)
181 2bkl_A Prolyl endopeptidase; m 99.5 1.3E-12 4.3E-17 136.9 24.9 250 2-273 123-400 (695)
182 1yr2_A Prolyl oligopeptidase; 99.5 8.6E-12 2.9E-16 131.5 30.4 287 7-317 114-442 (741)
183 1yr2_A Prolyl oligopeptidase; 99.5 1.1E-11 3.7E-16 130.7 29.4 253 2-273 165-444 (741)
184 3azo_A Aminopeptidase; POP fam 99.5 1.6E-12 5.4E-17 135.1 22.1 250 4-276 81-375 (662)
185 1q7f_A NHL, brain tumor CG1071 99.5 2.8E-11 9.6E-16 111.9 28.0 231 2-316 32-280 (286)
186 3iuj_A Prolyl endopeptidase; h 99.5 1.6E-11 5.5E-16 128.4 29.5 250 2-273 131-408 (693)
187 2mad_H Methylamine dehydrogena 99.5 3.5E-10 1.2E-14 109.1 34.9 277 6-321 27-356 (373)
188 3c75_H MADH, methylamine dehyd 99.4 1.9E-10 6.4E-15 112.2 28.2 288 8-334 81-422 (426)
189 3sjl_D Methylamine dehydrogena 99.4 3.7E-10 1.3E-14 108.3 28.0 293 4-335 37-384 (386)
190 2dg1_A DRP35, lactonase; beta 99.4 9.9E-10 3.4E-14 103.7 30.9 243 2-269 47-315 (333)
191 3iuj_A Prolyl endopeptidase; h 99.3 2.5E-10 8.7E-15 119.3 25.6 247 51-317 130-406 (693)
192 2mad_H Methylamine dehydrogena 99.3 5E-09 1.7E-13 101.0 32.2 245 4-277 70-357 (373)
193 3sjl_D Methylamine dehydrogena 99.3 5E-10 1.7E-14 107.4 24.5 259 5-290 83-384 (386)
194 3no2_A Uncharacterized protein 99.3 4.7E-09 1.6E-13 96.8 30.1 216 10-298 4-231 (276)
195 3e5z_A Putative gluconolactona 99.3 2.1E-09 7.3E-14 99.7 27.6 223 54-299 32-276 (296)
196 3dsm_A Uncharacterized protein 99.3 1.9E-09 6.6E-14 102.0 27.6 269 22-325 13-311 (328)
197 1rwi_B Serine/threonine-protei 99.3 3.2E-09 1.1E-13 96.8 26.7 234 3-271 27-265 (270)
198 3e5z_A Putative gluconolactona 99.3 4E-09 1.4E-13 97.9 27.4 236 2-273 30-289 (296)
199 1rwi_B Serine/threonine-protei 99.3 3E-09 1E-13 96.9 25.6 232 54-319 28-267 (270)
200 2ece_A 462AA long hypothetical 99.3 1.1E-07 3.8E-12 91.9 37.0 280 8-298 22-399 (462)
201 2z2n_A Virginiamycin B lyase; 99.2 7E-08 2.4E-12 88.9 34.5 267 2-316 17-295 (299)
202 3c75_H MADH, methylamine dehyd 99.2 3.3E-09 1.1E-13 103.4 26.2 261 4-290 122-423 (426)
203 3dsm_A Uncharacterized protein 99.2 2.5E-09 8.6E-14 101.2 24.2 240 24-287 62-319 (328)
204 3g4e_A Regucalcin; six bladed 99.2 7.5E-08 2.6E-12 89.5 29.6 225 54-299 17-261 (297)
205 1q7f_A NHL, brain tumor CG1071 99.1 5.6E-08 1.9E-12 89.4 28.2 219 90-341 29-267 (286)
206 1pjx_A Dfpase, DIISOPROPYLFLUO 99.1 5E-08 1.7E-12 90.8 27.8 244 2-270 20-299 (314)
207 3hrp_A Uncharacterized protein 99.1 1E-07 3.4E-12 93.0 30.3 228 2-314 133-408 (409)
208 2qc5_A Streptogramin B lactona 99.1 9.2E-07 3.1E-11 81.3 34.3 255 2-296 22-288 (300)
209 1mda_H Methylamine dehydrogena 99.1 1.5E-08 5E-13 97.1 21.3 256 4-288 69-365 (368)
210 1pjx_A Dfpase, DIISOPROPYLFLUO 99.1 1.6E-07 5.5E-12 87.4 27.9 239 53-315 21-298 (314)
211 1mda_H Methylamine dehydrogena 99.1 1.4E-08 5E-13 97.1 20.7 255 27-323 47-354 (368)
212 3g4e_A Regucalcin; six bladed 99.0 4.4E-07 1.5E-11 84.3 28.7 227 4-256 17-261 (297)
213 2z2n_A Virginiamycin B lyase; 99.0 3.8E-06 1.3E-10 77.0 34.3 248 51-337 16-278 (299)
214 3fvz_A Peptidyl-glycine alpha- 99.0 1.2E-07 4E-12 89.6 24.4 204 118-341 69-307 (329)
215 1fwx_A Nitrous oxide reductase 99.0 8.1E-08 2.8E-12 96.1 22.7 261 9-319 99-434 (595)
216 2ghs_A AGR_C_1268P; regucalcin 98.9 2.9E-06 1E-10 79.8 30.0 218 54-299 53-291 (326)
217 3dr2_A Exported gluconolactona 98.9 9.3E-07 3.2E-11 82.3 25.9 222 54-299 49-296 (305)
218 2ghs_A AGR_C_1268P; regucalcin 98.9 2.4E-06 8.2E-11 80.4 28.4 225 3-256 52-291 (326)
219 2qe8_A Uncharacterized protein 98.9 4.6E-07 1.6E-11 86.0 23.6 259 2-299 19-310 (343)
220 3no2_A Uncharacterized protein 98.9 4.3E-07 1.5E-11 83.6 22.3 181 115-323 12-203 (276)
221 1npe_A Nidogen, entactin; glyc 98.9 7.8E-06 2.7E-10 74.3 30.0 249 11-292 1-263 (267)
222 2qc5_A Streptogramin B lactona 98.8 3.7E-05 1.3E-09 70.3 32.8 231 53-319 23-263 (300)
223 1npe_A Nidogen, entactin; glyc 98.8 2.6E-05 8.8E-10 70.8 30.4 248 61-336 1-262 (267)
224 2xe4_A Oligopeptidase B; hydro 98.8 8.1E-06 2.8E-10 85.9 30.6 200 53-268 177-398 (751)
225 2xe4_A Oligopeptidase B; hydro 98.8 3.7E-06 1.3E-10 88.5 27.6 249 3-272 177-460 (751)
226 1xip_A Nucleoporin NUP159; bet 98.7 2.5E-07 8.7E-12 88.9 16.5 126 195-341 88-230 (388)
227 2ece_A 462AA long hypothetical 98.7 8.5E-06 2.9E-10 78.9 26.7 241 6-255 88-399 (462)
228 3dr2_A Exported gluconolactona 98.7 2.2E-05 7.6E-10 72.8 28.3 226 3-256 48-296 (305)
229 3hrp_A Uncharacterized protein 98.7 7.9E-06 2.7E-10 79.5 25.5 198 90-318 130-357 (409)
230 1xip_A Nucleoporin NUP159; bet 98.7 3.3E-06 1.1E-10 81.1 22.1 215 51-299 39-299 (388)
231 1fwx_A Nitrous oxide reductase 98.5 4.4E-06 1.5E-10 83.6 18.8 267 12-316 14-361 (595)
232 2qe8_A Uncharacterized protein 98.2 0.00029 1E-08 66.4 22.7 180 142-337 67-303 (343)
233 1kb0_A Quinohemoprotein alcoho 98.1 0.001 3.6E-08 68.9 26.6 58 261-324 457-516 (677)
234 2iwa_A Glutamine cyclotransfer 98.1 0.00092 3.1E-08 60.5 22.5 194 3-228 24-237 (266)
235 1kb0_A Quinohemoprotein alcoho 98.1 0.0033 1.1E-07 65.1 28.6 76 219-297 457-537 (677)
236 3v65_B Low-density lipoprotein 98.0 0.0041 1.4E-07 59.7 27.3 223 25-274 95-322 (386)
237 3v64_C Agrin; beta propeller, 98.0 0.01 3.4E-07 56.1 29.9 220 26-272 53-277 (349)
238 3v65_B Low-density lipoprotein 98.0 0.012 4E-07 56.4 30.4 233 61-322 87-325 (386)
239 2iwa_A Glutamine cyclotransfer 97.9 0.00046 1.6E-08 62.5 17.0 175 145-343 24-224 (266)
240 3hxj_A Pyrrolo-quinoline quino 97.9 0.00097 3.3E-08 61.8 19.9 105 196-315 215-323 (330)
241 1ijq_A LDL receptor, low-densi 97.9 0.015 5.2E-07 53.9 28.7 224 25-275 9-243 (316)
242 1yiq_A Quinohemoprotein alcoho 97.9 0.011 3.9E-07 61.2 28.9 58 261-324 455-514 (689)
243 2fp8_A Strictosidine synthase; 97.8 0.021 7.1E-07 52.9 28.5 238 3-270 22-313 (322)
244 1yiq_A Quinohemoprotein alcoho 97.8 0.031 1.1E-06 57.9 29.7 77 219-298 455-536 (689)
245 3nol_A Glutamine cyclotransfer 97.7 0.0017 5.8E-08 58.2 17.2 157 173-343 63-243 (262)
246 3v64_C Agrin; beta propeller, 97.7 0.031 1.1E-06 52.7 32.6 237 54-321 38-281 (349)
247 3hxj_A Pyrrolo-quinoline quino 97.7 0.011 3.6E-07 54.6 23.6 208 24-270 115-324 (330)
248 2fp8_A Strictosidine synthase; 97.7 0.0093 3.2E-07 55.3 23.0 241 54-316 23-313 (322)
249 3qqz_A Putative uncharacterize 97.7 0.025 8.4E-07 50.7 24.5 198 2-226 29-251 (255)
250 3s25_A Hypothetical 7-bladed b 97.7 0.033 1.1E-06 51.3 29.2 259 7-317 21-294 (302)
251 3q7m_A Lipoprotein YFGL, BAMB; 97.6 0.026 9.1E-07 53.3 25.4 95 215-322 245-344 (376)
252 3nol_A Glutamine cyclotransfer 97.6 0.018 6.1E-07 51.6 22.0 183 3-218 46-247 (262)
253 2p4o_A Hypothetical protein; p 97.6 0.04 1.4E-06 50.6 28.1 232 35-299 21-277 (306)
254 1n7d_A LDL receptor, low-densi 97.6 0.0009 3.1E-08 69.6 15.5 228 25-279 385-623 (699)
255 3tc9_A Hypothetical hydrolase; 97.6 0.0057 1.9E-07 59.6 20.1 133 176-317 160-302 (430)
256 2hz6_A Endoplasmic reticulum t 97.6 0.00012 4.3E-09 69.9 8.0 62 10-81 8-70 (369)
257 4hw6_A Hypothetical protein, I 97.6 0.063 2.2E-06 52.2 27.2 139 3-159 142-290 (433)
258 3sov_A LRP-6, low-density lipo 97.6 0.047 1.6E-06 50.7 25.0 223 25-274 12-242 (318)
259 3s25_A Hypothetical 7-bladed b 97.5 0.0045 1.6E-07 57.2 17.7 177 147-341 58-239 (302)
260 4a2l_A BT_4663, two-component 97.5 0.1 3.6E-06 54.8 30.4 269 2-317 133-437 (795)
261 3p5b_L Low density lipoprotein 97.5 0.076 2.6E-06 51.0 29.1 226 25-277 91-327 (400)
262 3tc9_A Hypothetical hydrolase; 97.5 0.039 1.3E-06 53.6 23.8 158 92-269 138-300 (430)
263 3q7m_A Lipoprotein YFGL, BAMB; 97.4 0.072 2.5E-06 50.3 25.1 242 24-313 111-375 (376)
264 3mbr_X Glutamine cyclotransfer 97.4 0.0043 1.5E-07 55.1 15.0 157 173-343 41-222 (243)
265 3p5b_L Low density lipoprotein 97.4 0.096 3.3E-06 50.3 30.8 235 62-322 84-327 (400)
266 3m0c_C LDL receptor, low-densi 97.4 0.17 5.9E-06 53.0 30.6 230 63-318 397-635 (791)
267 1k3i_A Galactose oxidase precu 97.4 0.032 1.1E-06 57.4 23.6 283 4-299 190-530 (656)
268 3sov_A LRP-6, low-density lipo 97.4 0.089 3E-06 48.8 29.5 231 63-320 6-243 (318)
269 2ad6_A Methanol dehydrogenase 97.4 0.15 5.3E-06 51.3 28.5 79 218-299 443-526 (571)
270 4hw6_A Hypothetical protein, I 97.3 0.08 2.7E-06 51.4 24.4 202 92-319 140-377 (433)
271 1kv9_A Type II quinohemoprotei 97.3 0.17 5.8E-06 52.1 27.6 57 261-323 438-496 (668)
272 3qqz_A Putative uncharacterize 97.3 0.061 2.1E-06 48.1 21.2 176 143-337 28-236 (255)
273 3m0c_C LDL receptor, low-densi 97.3 0.19 6.3E-06 52.8 27.8 221 26-274 404-636 (791)
274 1ijq_A LDL receptor, low-densi 97.3 0.12 4.1E-06 47.7 31.3 232 63-320 3-243 (316)
275 2p4o_A Hypothetical protein; p 97.2 0.13 4.4E-06 47.1 26.0 215 92-341 33-274 (306)
276 2ism_A Putative oxidoreductase 97.2 0.17 5.6E-06 47.6 24.0 240 50-299 32-334 (352)
277 3nok_A Glutaminyl cyclase; bet 97.1 0.031 1.1E-06 50.1 17.0 159 115-299 72-254 (268)
278 3mbr_X Glutamine cyclotransfer 97.1 0.14 4.7E-06 45.3 22.8 177 93-299 23-223 (243)
279 2xzh_A Clathrin heavy chain 1; 97.0 0.2 6.8E-06 46.2 30.7 266 11-321 36-328 (365)
280 3kya_A Putative phosphatase; s 97.0 0.038 1.3E-06 54.4 18.1 155 144-317 141-342 (496)
281 3nok_A Glutaminyl cyclase; bet 97.0 0.0088 3E-07 53.6 12.3 128 204-343 102-253 (268)
282 3sre_A PON1, serum paraoxonase 96.8 0.32 1.1E-05 45.7 24.7 97 196-298 165-285 (355)
283 1n7d_A LDL receptor, low-densi 96.7 0.0083 2.8E-07 62.3 11.8 113 198-317 455-572 (699)
284 3v9f_A Two-component system se 96.7 0.75 2.6E-05 48.1 29.9 108 195-317 406-525 (781)
285 2p9w_A MAL S 1 allergenic prot 96.6 0.27 9.4E-06 45.4 19.6 121 145-271 66-216 (334)
286 4a2l_A BT_4663, two-component 96.6 0.92 3.2E-05 47.5 35.4 265 2-316 175-480 (795)
287 2hz6_A Endoplasmic reticulum t 96.5 0.00077 2.6E-08 64.4 2.2 110 197-320 39-154 (369)
288 2ad6_A Methanol dehydrogenase 96.5 0.84 2.9E-05 45.9 27.8 59 260-324 443-503 (571)
289 1k3i_A Galactose oxidase precu 96.5 0.29 9.8E-06 50.2 21.1 69 4-79 247-323 (656)
290 4a0p_A LRP6, LRP-6, low-densit 96.4 1 3.5E-05 45.8 27.6 221 25-271 14-238 (628)
291 4a0p_A LRP6, LRP-6, low-densit 96.3 1.1 3.7E-05 45.6 30.8 228 61-317 6-239 (628)
292 1kv9_A Type II quinohemoprotei 96.3 1.1 3.9E-05 45.8 28.3 76 219-297 438-518 (668)
293 1bpo_A Protein (clathrin); cla 96.3 0.85 2.9E-05 43.8 29.4 232 70-335 48-311 (494)
294 1bpo_A Protein (clathrin); cla 96.3 0.86 2.9E-05 43.7 32.4 267 11-321 35-327 (494)
295 3a9g_A Putative uncharacterize 96.3 0.069 2.4E-06 50.3 14.0 142 197-341 30-213 (354)
296 2xzh_A Clathrin heavy chain 1; 96.3 0.7 2.4E-05 42.6 29.3 248 54-335 30-312 (365)
297 3kya_A Putative phosphatase; s 96.2 1 3.5E-05 44.3 27.5 146 3-158 142-326 (496)
298 1w6s_A Methanol dehydrogenase 96.2 1.2 4.2E-05 44.9 28.7 77 219-298 453-534 (599)
299 3a9g_A Putative uncharacterize 96.2 0.21 7.1E-06 47.0 16.9 140 144-297 31-215 (354)
300 3s94_A LRP-6, low-density lipo 96.2 0.78 2.7E-05 46.6 22.3 157 144-318 42-204 (619)
301 2ism_A Putative oxidoreductase 95.9 0.16 5.4E-06 47.8 14.5 98 197-298 32-153 (352)
302 2p9w_A MAL S 1 allergenic prot 95.8 0.65 2.2E-05 42.9 17.4 110 198-315 65-214 (334)
303 2g8s_A Glucose/sorbosone dehyd 95.8 0.21 7.1E-06 47.0 14.7 141 144-296 20-214 (353)
304 3v9f_A Two-component system se 95.7 2.5 8.4E-05 44.1 30.6 109 195-318 494-613 (781)
305 3sre_A PON1, serum paraoxonase 95.7 0.52 1.8E-05 44.2 16.9 114 196-315 112-251 (355)
306 3s94_A LRP-6, low-density lipo 95.3 2.8 9.7E-05 42.5 33.6 136 176-318 372-512 (619)
307 3das_A Putative oxidoreductase 95.2 1.1 3.7E-05 41.9 17.4 142 144-297 34-219 (347)
308 1cru_A Protein (soluble quinop 95.1 1.2 4.2E-05 43.3 18.1 104 195-298 76-246 (454)
309 3das_A Putative oxidoreductase 94.9 1.2 4E-05 41.7 16.7 137 197-336 33-213 (347)
310 3amr_A 3-phytase; beta-propell 94.9 2.4 8.2E-05 39.5 24.1 113 196-317 128-264 (355)
311 1xi4_A Clathrin heavy chain; a 94.9 3.4 0.00012 45.8 21.9 238 11-277 35-296 (1630)
312 2g8s_A Glucose/sorbosone dehyd 94.2 3.5 0.00012 38.4 29.2 51 50-101 19-76 (353)
313 3pbp_A Nucleoporin NUP82; beta 94.1 4.2 0.00014 38.9 18.8 129 25-159 40-197 (452)
314 1cru_A Protein (soluble quinop 93.9 1.9 6.5E-05 41.9 16.4 100 197-299 28-163 (454)
315 1xi4_A Clathrin heavy chain; a 93.8 5.5 0.00019 44.2 20.4 219 70-322 48-296 (1630)
316 3sbq_A Nitrous-oxide reductase 93.6 0.97 3.3E-05 44.7 13.2 117 197-318 324-480 (638)
317 4hvt_A Ritya.17583.B, post-pro 93.5 7.7 0.00026 40.0 25.8 254 4-269 133-429 (711)
318 1flg_A Protein (quinoprotein e 93.1 7.9 0.00027 38.8 27.4 78 218-298 465-547 (582)
319 3pbp_A Nucleoporin NUP82; beta 92.6 7.4 0.00025 37.2 19.1 146 58-222 29-206 (452)
320 2xbg_A YCF48-like protein; pho 92.5 6.2 0.00021 36.1 29.1 96 195-299 204-311 (327)
321 3amr_A 3-phytase; beta-propell 92.3 7.1 0.00024 36.3 25.8 197 62-278 42-272 (355)
322 1w6s_A Methanol dehydrogenase 92.0 11 0.00039 37.8 28.4 59 260-324 452-512 (599)
323 2wg3_C Hedgehog-interacting pr 91.5 11 0.00037 36.7 17.9 96 195-290 68-227 (463)
324 1flg_A Protein (quinoprotein e 91.0 14 0.00047 37.0 29.5 59 260-324 465-525 (582)
325 1tl2_A L10, protein (tachylect 89.3 2.9 0.0001 36.2 10.1 92 197-297 42-152 (236)
326 2wg3_C Hedgehog-interacting pr 87.1 23 0.00078 34.3 16.6 100 198-299 16-158 (463)
327 4hvt_A Ritya.17583.B, post-pro 87.1 30 0.001 35.6 24.1 240 57-315 137-429 (711)
328 2xbg_A YCF48-like protein; pho 83.9 25 0.00085 31.9 30.7 127 195-336 162-304 (327)
329 2vpj_A Kelch-like protein 12; 81.0 29 0.00099 30.7 21.3 79 219-299 175-262 (301)
330 3sbq_A Nitrous-oxide reductase 80.9 2.5 8.6E-05 41.9 6.3 69 240-316 326-408 (638)
331 4gq2_M Nucleoporin NUP120; bet 79.8 6.2 0.00021 42.2 9.6 38 2-44 238-275 (950)
332 4a9v_A PHOX; hydrolase, beta-p 77.9 12 0.00041 37.2 10.1 63 240-302 479-553 (592)
333 2vpj_A Kelch-like protein 12; 76.4 40 0.0014 29.7 22.4 64 208-272 207-280 (301)
334 3zwu_A Alkaline phosphatase PH 71.0 15 0.00051 36.8 9.0 61 241-301 480-552 (592)
335 1tl2_A L10, protein (tachylect 69.1 21 0.0007 30.9 8.2 86 238-336 42-146 (236)
336 3f7f_A Nucleoporin NUP120; nuc 67.7 5.8 0.0002 40.6 5.2 36 2-44 224-259 (729)
337 4fhn_B Nucleoporin NUP120; pro 66.7 5.4 0.00018 43.7 5.2 39 2-45 240-278 (1139)
338 3zwu_A Alkaline phosphatase PH 62.7 12 0.00043 37.4 6.5 62 4-67 480-548 (592)
339 3ei3_A DNA damage-binding prot 62.5 1.8E+02 0.0062 31.7 32.3 71 2-78 556-635 (1158)
340 3mez_B Mannose-specific lectin 62.3 40 0.0014 25.2 8.1 61 11-79 24-84 (113)
341 3ii7_A Kelch-like protein 7; p 59.5 92 0.0032 27.4 12.2 109 208-316 12-127 (306)
342 4gq2_M Nucleoporin NUP120; bet 58.3 45 0.0015 35.6 10.3 72 238-315 237-316 (950)
343 1b2p_A Protein (lectin); manno 55.5 46 0.0016 25.2 7.4 61 8-78 27-87 (119)
344 1zgk_A Kelch-like ECH-associat 53.6 1.2E+02 0.004 26.8 20.2 52 219-272 231-289 (308)
345 2uvk_A YJHT; unknown function, 49.7 69 0.0024 29.0 9.1 59 262-320 286-346 (357)
346 4a9v_A PHOX; hydrolase, beta-p 46.8 34 0.0012 34.0 6.5 62 4-67 480-548 (592)
347 3ei3_A DNA damage-binding prot 46.5 3.2E+02 0.011 29.7 33.6 234 63-316 708-999 (1158)
348 2woz_A Kelch repeat and BTB do 41.4 1.3E+02 0.0045 26.6 9.5 110 207-322 158-293 (318)
349 3kxs_F Capsid protein; core pr 39.5 9.9 0.00034 28.7 1.1 10 379-388 128-137 (143)
350 2uvk_A YJHT; unknown function, 38.6 90 0.0031 28.2 8.0 93 207-299 19-127 (357)
351 2zwa_A Leucine carboxyl methyl 38.1 3.3E+02 0.011 27.5 16.1 98 220-318 469-579 (695)
352 4h3o_A Lectin; cadmium, plant 36.1 1.3E+02 0.0043 22.0 9.9 60 11-79 19-78 (105)
353 4asc_A Kelch repeat and BTB do 33.7 2.4E+02 0.0083 24.7 12.7 151 171-321 9-179 (315)
354 2xn4_A Kelch-like protein 2; s 33.5 2.4E+02 0.0081 24.5 20.6 52 219-272 173-231 (302)
355 3a0c_A Mannose/sialic acid-bin 32.7 1.5E+02 0.005 21.8 9.3 60 9-78 18-77 (110)
356 2zwa_A Leucine carboxyl methyl 30.7 2.4E+02 0.0083 28.5 10.3 95 219-317 412-523 (695)
357 1zgk_A Kelch-like ECH-associat 30.3 2.8E+02 0.0094 24.2 19.6 53 219-273 184-243 (308)
358 2fr2_A Hypothetical protein RV 27.6 2.5E+02 0.0084 22.8 8.6 56 4-77 38-95 (172)
359 2xn4_A Kelch-like protein 2; s 26.9 3.1E+02 0.011 23.7 21.9 54 219-272 220-278 (302)
360 2a13_A AT1G79260; structural g 26.5 2.4E+02 0.0083 22.7 7.6 56 4-77 49-106 (166)
361 3q6k_A 43.2 kDa salivary prote 22.1 4.7E+02 0.016 24.2 19.6 113 196-316 152-306 (381)
362 3dzw_A Agglutinin; lectin, man 21.6 2.4E+02 0.0081 20.5 9.1 60 10-79 18-77 (109)
363 4fhn_B Nucleoporin NUP120; pro 21.6 87 0.003 34.1 5.1 38 238-278 239-276 (1139)
364 2be1_A Serine/threonine-protei 21.0 4.6E+02 0.016 23.8 9.2 107 211-325 12-140 (339)
No 1
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.8e-32 Score=260.97 Aligned_cols=274 Identities=12% Similarity=0.075 Sum_probs=211.7
Q ss_pred cceEEecCC----CcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEe
Q 013871 2 LLLLTCLRV----GLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFD 76 (434)
Q Consensus 2 V~~l~fSP~----g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~ 76 (434)
|++|+|+|+ +.+|+|++ .|+.|+|||+.+++....+.... |...+.+++|++++.++++++ |++|++||
T Consensus 35 V~~v~~~~~~~~~~~~l~tgs-----~D~~v~vW~~~~~~~~~~~~l~g-h~~~v~~~~~~~~~~~l~s~s~D~~i~lWd 108 (321)
T 3ow8_A 35 IWSVAWGTNKKENSETVVTGS-----LDDLVKVWKWRDERLDLQWSLEG-HQLGVVSVDISHTLPIAASSSLDAHIRLWD 108 (321)
T ss_dssp EEEEEEC-------CEEEEEE-----TTSCEEEEEEETTEEEEEEEECC-CSSCEEEEEECSSSSEEEEEETTSEEEEEE
T ss_pred EEEEEEecCCCCCCCEEEEEc-----CCCCEEEEECCCCCeeeeeeecc-CCCCEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence 789999985 67999999 89999999998776533322221 446777999999999999885 68999999
Q ss_pred CCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeE
Q 013871 77 TTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGL 156 (434)
Q Consensus 77 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l 156 (434)
+.+.........+...+..++|+|+ +..+++ ++..+.|++|++.. +........+...+..+.|+|+|+.|
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~spd-g~~l~~-----g~~dg~v~i~~~~~---~~~~~~~~~~~~~v~~~~~spdg~~l 179 (321)
T 3ow8_A 109 LENGKQIKSIDAGPVDAWTLAFSPD-SQYLAT-----GTHVGKVNIFGVES---GKKEYSLDTRGKFILSIAYSPDGKYL 179 (321)
T ss_dssp TTTTEEEEEEECCTTCCCCEEECTT-SSEEEE-----ECTTSEEEEEETTT---CSEEEEEECSSSCEEEEEECTTSSEE
T ss_pred CCCCCEEEEEeCCCccEEEEEECCC-CCEEEE-----EcCCCcEEEEEcCC---CceeEEecCCCceEEEEEECCCCCEE
Confidence 9875433333344556888999999 455554 35568999999987 66777777777788999999999987
Q ss_pred EEEEEecccccCceeecceeEEEEeeCCcceeeeec-CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-ceeEEe
Q 013871 157 LAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL-RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL 234 (434)
Q Consensus 157 ~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l-~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~-~~~~~~ 234 (434)
+... .|... .++++... .....+ .+..+|.+++|+|+++.|+ ++..|+.|++||++. ..+..+
T Consensus 180 asg~---~dg~i---------~iwd~~~~-~~~~~~~~h~~~v~~l~~spd~~~l~--s~s~dg~i~iwd~~~~~~~~~~ 244 (321)
T 3ow8_A 180 ASGA---IDGII---------NIFDIATG-KLLHTLEGHAMPIRSLTFSPDSQLLV--TASDDGYIKIYDVQHANLAGTL 244 (321)
T ss_dssp EEEE---TTSCE---------EEEETTTT-EEEEEECCCSSCCCEEEECTTSCEEE--EECTTSCEEEEETTTCCEEEEE
T ss_pred EEEc---CCCeE---------EEEECCCC-cEEEEEcccCCceeEEEEcCCCCEEE--EEcCCCeEEEEECCCcceeEEE
Confidence 6532 34333 33333333 222222 3478999999999999888 688899999999964 344444
Q ss_pred --CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEE
Q 013871 235 --GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIK 310 (434)
Q Consensus 235 --~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~ 310 (434)
|...+.+++|+|+|++|++++ .+|.|+|||+.+++++..+.+| .+..++|+|+|++|++++. |+.|+
T Consensus 245 ~~h~~~v~~~~~sp~~~~l~s~s---~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~------d~~i~ 315 (321)
T 3ow8_A 245 SGHASWVLNVAFCPDDTHFVSSS---SDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGD------DQEIH 315 (321)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEE---TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET------TCCEE
T ss_pred cCCCCceEEEEECCCCCEEEEEe---CCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeC------CCeEE
Confidence 778899999999999999999 5679999999999999998776 5667999999999999999 99999
Q ss_pred EEee
Q 013871 311 IFHH 314 (434)
Q Consensus 311 iw~~ 314 (434)
|||+
T Consensus 316 vwd~ 319 (321)
T 3ow8_A 316 IYDC 319 (321)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9996
No 2
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=2.7e-32 Score=261.65 Aligned_cols=271 Identities=10% Similarity=0.122 Sum_probs=213.1
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF 80 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~ 80 (434)
|++++|||||++|++++ .|+.|+|||+.+++.+..+..+. ..+.+++|+||+++|++++ ++.|++|++...
T Consensus 58 v~~~~~s~d~~~l~s~s-----~Dg~v~iWd~~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~ 129 (340)
T 1got_B 58 IYAMHWGTDSRLLLSAS-----QDGKLIIWDSYTTNKVHAIPLRS---SWVMTCAYAPSGNYVACGGLDNICSIYNLKTR 129 (340)
T ss_dssp EEEEEECTTSSEEEEEE-----TTTEEEEEETTTCCEEEEEECSS---SCEEEEEECTTSSEEEEEETTCEEEEEETTTC
T ss_pred eEEEEECCCCCEEEEEe-----CCCcEEEEECCCCCcceEeecCC---ccEEEEEECCCCCEEEEEeCCCeEEEEECccC
Confidence 78999999999999999 89999999999999988887654 5666899999999999884 689999998764
Q ss_pred CCc----eeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeE
Q 013871 81 PKG----ILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGL 156 (434)
Q Consensus 81 ~~~----~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l 156 (434)
... .....|...|..+.|+|++ . ++. .+.++.|++|++.+ ++.+.....|...+..+.|+|+|..+
T Consensus 130 ~~~~~~~~~~~~h~~~v~~~~~~~~~-~-l~s-----~s~d~~i~~wd~~~---~~~~~~~~~h~~~v~~~~~~~~~~~l 199 (340)
T 1got_B 130 EGNVRVSRELAGHTGYLSCCRFLDDN-Q-IVT-----SSGDTTCALWDIET---GQQTTTFTGHTGDVMSLSLAPDTRLF 199 (340)
T ss_dssp SBSCEEEEEEECCSSCEEEEEEEETT-E-EEE-----EETTSCEEEEETTT---TEEEEEECCCSSCEEEEEECTTSSEE
T ss_pred CCcceeEEEecCCCccEEEEEECCCC-c-EEE-----EECCCcEEEEECCC---CcEEEEEcCCCCceEEEEECCCCCEE
Confidence 321 1123345578899999873 3 332 24567899999988 77788888888899999999999875
Q ss_pred EEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccc-eeEEeC
Q 013871 157 LAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PILELG 235 (434)
Q Consensus 157 ~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~-~~~~~~ 235 (434)
+.. ..|.+.+.| ++........-..+...|.+++|+|+++.|+ +|..|+.|++||++.. .+..+.
T Consensus 200 ~sg---~~d~~v~~w---------d~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~--s~s~d~~v~iwd~~~~~~~~~~~ 265 (340)
T 1got_B 200 VSG---ACDASAKLW---------DVREGMCRQTFTGHESDINAICFFPNGNAFA--TGSDDATCRLFDLRADQELMTYS 265 (340)
T ss_dssp EEE---ETTSCEEEE---------ETTTCSEEEEECCCSSCEEEEEECTTSSEEE--EEETTSCEEEEETTTTEEEEEEC
T ss_pred EEE---eCCCcEEEE---------ECCCCeeEEEEcCCcCCEEEEEEcCCCCEEE--EEcCCCcEEEEECCCCcEEEEEc
Confidence 432 244444433 3222211111223578999999999999988 5788999999999743 444442
Q ss_pred ----CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcE
Q 013871 236 ----SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGI 309 (434)
Q Consensus 236 ----~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~prl~~D~~i 309 (434)
...+.+++|+|+|++|++|+ .+|.|++||+.+++.+..+.+| .+..++|+|||++|++++. |+.|
T Consensus 266 ~~~~~~~v~~~~~s~~g~~l~~g~---~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~------D~~i 336 (340)
T 1got_B 266 HDNIICGITSVSFSKSGRLLLAGY---DDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSW------DSFL 336 (340)
T ss_dssp CTTCCSCEEEEEECTTSSEEEEEE---TTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEET------TSCE
T ss_pred cCCcccceEEEEECCCCCEEEEEC---CCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcC------CccE
Confidence 24689999999999999998 5679999999999888888877 5667999999999999999 9999
Q ss_pred EEEe
Q 013871 310 KIFH 313 (434)
Q Consensus 310 ~iw~ 313 (434)
+||+
T Consensus 337 ~iWd 340 (340)
T 1got_B 337 KIWN 340 (340)
T ss_dssp EEEC
T ss_pred EecC
Confidence 9996
No 3
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=6e-33 Score=273.27 Aligned_cols=272 Identities=14% Similarity=0.199 Sum_probs=218.5
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF 80 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~ 80 (434)
|++++|||++++|++++ .|+.|+|||+.+++.+..+..+. ..+.+++|+|++++|++++ |++|++||+...
T Consensus 111 V~~~~~~p~~~~l~s~s-----~Dg~i~vwd~~~~~~~~~l~~h~---~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~ 182 (410)
T 1vyh_C 111 VTRVIFHPVFSVMVSAS-----EDATIKVWDYETGDFERTLKGHT---DSVQDISFDHSGKLLASCSADMTIKLWDFQGF 182 (410)
T ss_dssp EEEEEECSSSSEEEEEE-----SSSCEEEEETTTCCCCEEECCCS---SCEEEEEECTTSSEEEEEETTSCCCEEETTSS
T ss_pred EEEEEEcCCCCEEEEEe-----CCCeEEEEECCCCcEEEEEeccC---CcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Confidence 78999999999999999 89999999999999888887653 6777999999999999885 679999999876
Q ss_pred CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEE
Q 013871 81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVA 160 (434)
Q Consensus 81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~ 160 (434)
........|...|.++.|+|++ ..++. ++.++.|++|++.+ +..+.....+...+..+.|+++|..++..
T Consensus 183 ~~~~~~~~h~~~V~~v~~~p~~-~~l~s-----~s~D~~i~~wd~~~---~~~~~~~~~h~~~v~~~~~~~~g~~l~s~- 252 (410)
T 1vyh_C 183 ECIRTMHGHDHNVSSVSIMPNG-DHIVS-----ASRDKTIKMWEVQT---GYCVKTFTGHREWVRMVRPNQDGTLIASC- 252 (410)
T ss_dssp CEEECCCCCSSCEEEEEECSSS-SEEEE-----EETTSEEEEEETTT---CCEEEEEECCSSCEEEEEECTTSSEEEEE-
T ss_pred ceeEEEcCCCCCEEEEEEeCCC-CEEEE-----EeCCCeEEEEECCC---CcEEEEEeCCCccEEEEEECCCCCEEEEE-
Confidence 5444445566789999999984 44443 35668999999988 77888888888889999999999976543
Q ss_pred EecccccCceeecceeEEEEeeCCcceeeee-cCCCCCeEEEEECcC--------------------CCEEEEEEccCCC
Q 013871 161 QSDVDKTNQSYYGESKLNYLTTDGTHEGLVP-LRKEGPVHDVQWSYS--------------------GSEFAVVYGFMPA 219 (434)
Q Consensus 161 ~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~-l~~~~~i~~v~wspd--------------------g~~~av~~g~~~~ 219 (434)
..|.+.+.| ++... .+... ..+...|.+++|+|+ |..|+ +|+.|+
T Consensus 253 --s~D~~v~vw---------d~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~--sgs~D~ 318 (410)
T 1vyh_C 253 --SNDQTVRVW---------VVATK-ECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLL--SGSRDK 318 (410)
T ss_dssp --ETTSCEEEE---------ETTTC-CEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEE--EEETTS
T ss_pred --cCCCeEEEE---------ECCCC-ceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEE--EEeCCC
Confidence 245444433 22222 22222 235789999999997 44555 688899
Q ss_pred eEEEEeccc-ceeEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEE
Q 013871 220 SATIFNKKC-RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYF 294 (434)
Q Consensus 220 ~v~l~d~~~-~~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l 294 (434)
.|++||++. ..+..+ |...+++++|+|+|++|++++ .+|.|+|||+.+++++..+.+| .++.++|+|++.+|
T Consensus 319 ~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s---~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l 395 (410)
T 1vyh_C 319 TIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCA---DDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYV 395 (410)
T ss_dssp EEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEE---TTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCE
T ss_pred eEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEe---CCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEE
Confidence 999999964 445554 788899999999999999999 5679999999999888888776 56779999999999
Q ss_pred EEEEcCCceeeCCcEEEEee
Q 013871 295 MTATTAPRLQIDNGIKIFHH 314 (434)
Q Consensus 295 ~tas~~prl~~D~~i~iw~~ 314 (434)
++++. |+.|+||++
T Consensus 396 ~sgs~------D~~i~vW~~ 409 (410)
T 1vyh_C 396 VTGSV------DQTVKVWEC 409 (410)
T ss_dssp EEEET------TSEEEEEC-
T ss_pred EEEeC------CCcEEEEeC
Confidence 99999 999999986
No 4
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=2.4e-33 Score=271.01 Aligned_cols=285 Identities=13% Similarity=0.125 Sum_probs=202.8
Q ss_pred cceEEecCCCcEEEEEecCCC-CCCCcEEEEEcCCCcEEEEEee-cCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCC
Q 013871 2 LLLLTCLRVGLIIQTFQKSST-PQEKNVILWKTETGEAVYQLFQ-KNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTD 79 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~-~~d~~v~iWd~~~g~~~~~~~~-~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~ 79 (434)
|.+|+|||||++|++++.... -.|+.|++|+..++.....+.. ...+...+.+++|+||+++++.+.+++|+|||+..
T Consensus 45 V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~ 124 (357)
T 4g56_B 45 IGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAVELWEILE 124 (357)
T ss_dssp EEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEEEETTSCEEEC----
T ss_pred EEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccc
Confidence 789999999999999984322 2378899999887764322111 01123667799999999999988899999999876
Q ss_pred CCCceeee----eecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCe
Q 013871 80 FPKGILYR----LRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTG 155 (434)
Q Consensus 80 ~~~~~~~~----~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~ 155 (434)
........ .|...|.+++|+|+ +..++. .+.++.|++|++.+ ++.+.....+...+..+.|++++..
T Consensus 125 ~~~~~~~~~~~~~h~~~V~~v~~spd-g~~l~s-----gs~dg~v~iwd~~~---~~~~~~~~~h~~~v~~v~~s~~~~~ 195 (357)
T 4g56_B 125 KESLLVNKFAKYEHDDIVKTLSVFSD-GTQAVS-----GGKDFSVKVWDLSQ---KAVLKSYNAHSSEVNCVAACPGKDT 195 (357)
T ss_dssp ----CCCCEEECCCSSCEEEEEECSS-SSEEEE-----EETTSCEEEEETTT---TEEEEEECCCSSCEEEEEECTTCSS
T ss_pred cceeEEEeeccCCCCCCEEEEEECCC-CCEEEE-----EeCCCeEEEEECCC---CcEEEEEcCCCCCEEEEEEccCCCc
Confidence 54322222 34557999999998 455553 34567899999988 7888888888889999999999986
Q ss_pred EEEEEEecccccCceeecceeEEEEeeCCcce-eeeec-CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-ceeE
Q 013871 156 LLAVAQSDVDKTNQSYYGESKLNYLTTDGTHE-GLVPL-RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPIL 232 (434)
Q Consensus 156 l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~-~~v~l-~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~-~~~~ 232 (434)
+++.+. .|.+.+ ++++..... ..+.+ .....+.+++|+|++..+++ +|..++.|++||++. ..+.
T Consensus 196 ~~~s~~--~dg~v~---------~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la-~g~~d~~i~~wd~~~~~~~~ 263 (357)
T 4g56_B 196 IFLSCG--EDGRIL---------LWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFA-CGDETGNVSLVNIKNPDSAQ 263 (357)
T ss_dssp CEEEEE--TTSCEE---------ECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEE-EEESSSCEEEEESSCGGGCE
T ss_pred eeeeec--cCCceE---------EEECCCCceeeeeeeccccccccchhhhhcccceEE-EeecccceeEEECCCCcEeE
Confidence 554433 333333 333322211 11121 23678999999998655443 577899999999963 4444
Q ss_pred Ee--CCcCeeEEEECCCC-CeEEEEecCCCCCeEEEEEccCCEEEEEeeCC-CceEEEECC-CCCEEEEEEcCCceeeCC
Q 013871 233 EL--GSGPYNTVRWNPKG-KFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-CSVTSEWSP-DGRYFMTATTAPRLQIDN 307 (434)
Q Consensus 233 ~~--~~~~~~~i~~SP~g-~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-~~~~~~wsp-dg~~l~tas~~prl~~D~ 307 (434)
.+ +...+++++|+|+| ++|++++ .||+|+|||+++++.+..+.+. .+..++||| |+.+|++++. |+
T Consensus 264 ~~~~~~~~v~~l~~sp~~~~~lasgs---~D~~i~iwd~~~~~~~~~~~H~~~V~~vafsP~d~~~l~s~s~------Dg 334 (357)
T 4g56_B 264 TSAVHSQNITGLAYSYHSSPFLASIS---EDCTVAVLDADFSEVFRDLSHRDFVTGVAWSPLDHSKFTTVGW------DH 334 (357)
T ss_dssp EECCCSSCEEEEEECSSSSCCEEEEE---TTSCEEEECTTSCEEEEECCCSSCEEEEEECSSSTTEEEEEET------TS
T ss_pred EEeccceeEEEEEEcCCCCCEEEEEe---CCCEEEEEECCCCcEeEECCCCCCEEEEEEeCCCCCEEEEEcC------CC
Confidence 44 78899999999998 5788888 5679999999999988776544 566699999 8999999999 99
Q ss_pred cEEEEeecC
Q 013871 308 GIKIFHHNG 316 (434)
Q Consensus 308 ~i~iw~~~g 316 (434)
.|+||++..
T Consensus 335 ~v~iW~~~~ 343 (357)
T 4g56_B 335 KVLHHHLPS 343 (357)
T ss_dssp CEEEEECC-
T ss_pred eEEEEECCC
Confidence 999999843
No 5
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=3.7e-31 Score=255.31 Aligned_cols=272 Identities=14% Similarity=0.162 Sum_probs=211.6
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF 80 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~ 80 (434)
|++|+|||+|++|+|++ .|+.|+|||+.+++....+..+. ..+.+++|+||+.++++++ ++.+++|++...
T Consensus 67 V~~~~~s~d~~~l~s~s-----~Dg~v~vWd~~~~~~~~~~~~~~---~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~ 138 (354)
T 2pbi_B 67 VLCMDWCKDKRRIVSSS-----QDGKVIVWDSFTTNKEHAVTMPC---TWVMACAYAPSGCAIACGGLDNKCSVYPLTFD 138 (354)
T ss_dssp EEEEEECTTSSEEEEEE-----TTSEEEEEETTTCCEEEEEECSS---SCCCEEEECTTSSEEEEESTTSEEEEEECCCC
T ss_pred EEEEEECCCCCEEEEEe-----CCCeEEEEECCCCCcceEEecCC---CCEEEEEECCCCCEEEEeeCCCCEEEEEEecc
Confidence 78999999999999999 89999999999999888876653 5667999999999999985 679999998542
Q ss_pred C------CceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCC--
Q 013871 81 P------KGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRG-- 152 (434)
Q Consensus 81 ~------~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~-- 152 (434)
. .......|...|..+.|+|+ +..++. .+.++.|++|++.+ ++.+.....|...+..+.|+|+
T Consensus 139 ~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~t-----~s~D~~v~lwd~~~---~~~~~~~~~h~~~v~~~~~~~~~~ 209 (354)
T 2pbi_B 139 KNENMAAKKKSVAMHTNYLSACSFTNS-DMQILT-----ASGDGTCALWDVES---GQLLQSFHGHGADVLCLDLAPSET 209 (354)
T ss_dssp TTCCSGGGCEEEEECSSCEEEEEECSS-SSEEEE-----EETTSEEEEEETTT---CCEEEEEECCSSCEEEEEECCCSS
T ss_pred ccccccccceeeeccCCcEEEEEEeCC-CCEEEE-----EeCCCcEEEEeCCC---CeEEEEEcCCCCCeEEEEEEeCCC
Confidence 1 11233456678999999998 444443 24568999999988 7788888888888888888874
Q ss_pred CCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccc-ee
Q 013871 153 STGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PI 231 (434)
Q Consensus 153 G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~-~~ 231 (434)
|..++.. ..|.+.+.| ++...........+...|.+++|+|++..|+ ++..|+.+++||++.. .+
T Consensus 210 g~~l~sg---s~Dg~v~~w---------d~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~--s~s~D~~v~lwd~~~~~~~ 275 (354)
T 2pbi_B 210 GNTFVSG---GCDKKAMVW---------DMRSGQCVQAFETHESDVNSVRYYPSGDAFA--SGSDDATCRLYDLRADREV 275 (354)
T ss_dssp CCEEEEE---ETTSCEEEE---------ETTTCCEEEEECCCSSCEEEEEECTTSSEEE--EEETTSCEEEEETTTTEEE
T ss_pred CCEEEEE---eCCCeEEEE---------ECCCCcEEEEecCCCCCeEEEEEeCCCCEEE--EEeCCCeEEEEECCCCcEE
Confidence 5654432 244444433 3322211112223578999999999999988 5778999999999754 33
Q ss_pred EEeC----CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceee
Q 013871 232 LELG----SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQI 305 (434)
Q Consensus 232 ~~~~----~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~prl~~ 305 (434)
..+. ...+.++.|+|+|++|++++ .+|.|++||+.+++.+..+.+| .+..++|+|||++|++++.
T Consensus 276 ~~~~~~~~~~~~~~~~~s~~g~~l~~g~---~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~------ 346 (354)
T 2pbi_B 276 AIYSKESIIFGASSVDFSLSGRLLFAGY---NDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSW------ 346 (354)
T ss_dssp EEECCTTCCSCEEEEEECTTSSEEEEEE---TTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEET------
T ss_pred EEEcCCCcccceeEEEEeCCCCEEEEEE---CCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcC------
Confidence 3332 24678999999999999998 5679999999999888888776 5667999999999999999
Q ss_pred CCcEEEEe
Q 013871 306 DNGIKIFH 313 (434)
Q Consensus 306 D~~i~iw~ 313 (434)
|+.|+||+
T Consensus 347 D~~v~vW~ 354 (354)
T 2pbi_B 347 DHTLRVWA 354 (354)
T ss_dssp TSEEEEEC
T ss_pred CCCEEecC
Confidence 99999996
No 6
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=2.4e-32 Score=266.15 Aligned_cols=278 Identities=13% Similarity=0.146 Sum_probs=210.9
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF 80 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~ 80 (434)
|++|+|||+|++|+|++ .|++|+|||+.+++.+..+..+. ..+.+++|+||+++|++++ |+.|++|++...
T Consensus 69 V~~~~~sp~~~~l~s~s-----~D~~v~iWd~~~~~~~~~~~~h~---~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~ 140 (380)
T 3iz6_a 69 VYSLDWTPEKNWIVSAS-----QDGRLIVWNALTSQKTHAIKLHC---PWVMECAFAPNGQSVACGGLDSACSIFNLSSQ 140 (380)
T ss_dssp EEEEEECTTSSCEEEEE-----TTSEEEEEETTTTEEEEEEECCC---TTCCCCEECTTSSEEEECCSSSCCEEEECCCC
T ss_pred EEEEEEcCCCCEEEEEe-----CCCeEEEEECCCCccceEEecCC---CCEEEEEECCCCCEEEEeeCCCcEEEEECCCC
Confidence 78999999999999999 89999999999999988887654 5667899999999999985 679999998642
Q ss_pred C-------CceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeee-----eecccceeEEE
Q 013871 81 P-------KGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARR-----SFFRCSTVQLN 148 (434)
Q Consensus 81 ~-------~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~-----~~~~~~~~~~~ 148 (434)
. .......|...|..+.|+|+.+..++. ++.++.|++|++.+ ++.+... ..|...+..+.
T Consensus 141 ~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s-----~s~D~~i~~wd~~~---~~~~~~~~~~~~~~h~~~v~~~~ 212 (380)
T 3iz6_a 141 ADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLIT-----GSGDQTCVLWDVTT---GQRISIFGSEFPSGHTADVLSLS 212 (380)
T ss_dssp SSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEE-----ECTTSCEEEECTTT---CCEEEEECCCSSSSCCSCEEEEE
T ss_pred ccccCCccceeeccCCCcceEEEEEecCCCCEEEE-----ECCCCcEEEEEcCC---CcEEEEeecccCCCCccCeEEEE
Confidence 1 112233455568888999986555553 35678999999987 5665544 45677888999
Q ss_pred ECC-CCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc
Q 013871 149 WNR-GSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK 227 (434)
Q Consensus 149 ws~-~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~ 227 (434)
|++ ++..++. ...|.+.+. |.+...+. .......+.+.|.+++|+|+|+.|+ +|+.|+.|++||++
T Consensus 213 ~~~~~~~~l~s---gs~D~~v~~-------wd~~~~~~-~~~~~~~h~~~v~~v~~~p~~~~l~--s~s~D~~i~lwd~~ 279 (380)
T 3iz6_a 213 INSLNANMFIS---GSCDTTVRL-------WDLRITSR-AVRTYHGHEGDINSVKFFPDGQRFG--TGSDDGTCRLFDMR 279 (380)
T ss_dssp ECSSSCCEEEE---EETTSCEEE-------EETTTTCC-CCEEECCCSSCCCEEEECTTSSEEE--EECSSSCEEEEETT
T ss_pred eecCCCCEEEE---EECCCeEEE-------EECCCCCc-ceEEECCcCCCeEEEEEecCCCeEE--EEcCCCeEEEEECC
Confidence 987 5555432 224544443 33221111 1122234578999999999999988 68889999999997
Q ss_pred cc-eeEEeC---------CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEe----eCC--CceEEEECCCC
Q 013871 228 CR-PILELG---------SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTT----RAE--CSVTSEWSPDG 291 (434)
Q Consensus 228 ~~-~~~~~~---------~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~----~~~--~~~~~~wspdg 291 (434)
.. .+..+. ...+++++|+|+|++|++|+ .+|.|++||+.+++.+..+ .+| .+..++|+|||
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~---~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg 356 (380)
T 3iz6_a 280 TGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGY---SNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDG 356 (380)
T ss_dssp TTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEEC---TTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSS
T ss_pred CCcEEEEecccccccccccCceEEEEECCCCCEEEEEE---CCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCC
Confidence 43 343331 12478999999999999988 5689999999988877766 344 56779999999
Q ss_pred CEEEEEEcCCceeeCCcEEEEeecCc
Q 013871 292 RYFMTATTAPRLQIDNGIKIFHHNGS 317 (434)
Q Consensus 292 ~~l~tas~~prl~~D~~i~iw~~~g~ 317 (434)
++|++++. |+.|+||++.+.
T Consensus 357 ~~l~sgs~------D~~i~iW~~~~~ 376 (380)
T 3iz6_a 357 SALCTGSW------DKNLKIWAFSGH 376 (380)
T ss_dssp SEEEEECT------TSCEEEEECCSS
T ss_pred CEEEEeeC------CCCEEEEecCCC
Confidence 99999999 999999999874
No 7
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=2.1e-31 Score=256.00 Aligned_cols=283 Identities=12% Similarity=0.127 Sum_probs=205.2
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF 80 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~ 80 (434)
|++|+|||+|++|+|++ .|+.|+|||+.++..+........|...+.+++|+||+++|++++ |++|++|+....
T Consensus 19 v~~l~~sp~g~~las~~-----~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~ 93 (345)
T 3fm0_A 19 CWFLAWNPAGTLLASCG-----GDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQD 93 (345)
T ss_dssp EEEEEECTTSSCEEEEE-----TTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC
T ss_pred EEEEEECCCCCEEEEEc-----CCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCC
Confidence 67999999999999999 899999999988865443332223557788999999999999985 679999998764
Q ss_pred CCc--eeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEE
Q 013871 81 PKG--ILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLA 158 (434)
Q Consensus 81 ~~~--~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~ 158 (434)
... .....|...|.+++|+|+ +..++. .+.++.|++|++........+.....+...+..+.|+|+|..|+.
T Consensus 94 ~~~~~~~~~~h~~~v~~v~~sp~-~~~l~s-----~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s 167 (345)
T 3fm0_A 94 DFECVTTLEGHENEVKSVAWAPS-GNLLAT-----CSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLAS 167 (345)
T ss_dssp -EEEEEEECCCSSCEEEEEECTT-SSEEEE-----EETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEE
T ss_pred CeEEEEEccCCCCCceEEEEeCC-CCEEEE-----EECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEE
Confidence 321 223345667999999998 455553 345678999999763212334555667788899999999997654
Q ss_pred EEEecccccCceeecceeEEEEeeCCcceeeeec-CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc---------
Q 013871 159 VAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL-RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC--------- 228 (434)
Q Consensus 159 ~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l-~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~--------- 228 (434)
. ..|.+.+.| .+.. +...+...+ .+.+.|.+++|+|+|+.|+ +++.|+.|++||...
T Consensus 168 ~---s~d~~i~~w-------~~~~-~~~~~~~~~~~h~~~v~~l~~sp~g~~l~--s~s~D~~v~iW~~~~~~~~~~~~~ 234 (345)
T 3fm0_A 168 A---SYDDTVKLY-------REEE-DDWVCCATLEGHESTVWSLAFDPSGQRLA--SCSDDRTVRIWRQYLPGNEQGVAC 234 (345)
T ss_dssp E---ETTSCEEEE-------EEET-TEEEEEEEECCCSSCEEEEEECTTSSEEE--EEETTSCEEEEEEECTTCTTCCCC
T ss_pred E---eCCCcEEEE-------EecC-CCEEEEEEecCCCCceEEEEECCCCCEEE--EEeCCCeEEEeccccCCCCcccee
Confidence 3 245554433 2221 111111222 3578999999999999988 578899999998621
Q ss_pred -------ceeEE---eCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCE--------EE-EEeeCC--CceEEEE
Q 013871 229 -------RPILE---LGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK--------QL-GTTRAE--CSVTSEW 287 (434)
Q Consensus 229 -------~~~~~---~~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~--------~i-~~~~~~--~~~~~~w 287 (434)
..+.. +|...+.+++|+|++.+|++++ .++.|++||..... .. ....+| .+..++|
T Consensus 235 ~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~---~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 311 (345)
T 3fm0_A 235 SGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATAC---GDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAW 311 (345)
T ss_dssp C---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEE---TTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEE
T ss_pred eccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEe---CCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEE
Confidence 11222 2677899999999999999998 55699999987531 11 222344 5777999
Q ss_pred CCCCC-EEEEEEcCCceeeCCcEEEEeecCc
Q 013871 288 SPDGR-YFMTATTAPRLQIDNGIKIFHHNGS 317 (434)
Q Consensus 288 spdg~-~l~tas~~prl~~D~~i~iw~~~g~ 317 (434)
+|++. +|++++. |+.|+||++...
T Consensus 312 ~p~~~~~laS~s~------Dg~v~~W~~~~~ 336 (345)
T 3fm0_A 312 NPKEPGLLASCSD------DGEVAFWKYQRP 336 (345)
T ss_dssp CSSSTTEEEEEET------TSCEEEEEECC-
T ss_pred eCCCceEEEEcCC------CCcEEEEEecCC
Confidence 99984 8999999 999999999654
No 8
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=8e-32 Score=258.97 Aligned_cols=274 Identities=11% Similarity=0.119 Sum_probs=196.8
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEc-------CC-----CcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKT-------ET-----GEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT 69 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~-------~~-----g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~ 69 (434)
|.+++|||||++|++.+ |..+++||. .. +.....+.. ...+.+++|++|+.+++.+.+
T Consensus 33 v~~~~fs~dG~~l~~~s------d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~s~d~~l~~~s~d 102 (344)
T 4gqb_B 33 LEAARYRSDGALLLGAS------SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQT----EAGVADLTWVGERGILVASDS 102 (344)
T ss_dssp EEEEEECTTSCEEEEEE------CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEE----SSCEEEEEEETTTEEEEEETT
T ss_pred EEEEEECCCCCEEEEEe------CCceEEeeceeeeeccccccCCcceeeeeecc----CCCEEEEEEeCCCeEEEEECC
Confidence 67899999999999877 344555542 11 111112221 255779999999877776678
Q ss_pred CeEEEEeCCCCCCceeee----eecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeeccccee
Q 013871 70 NEIQFFDTTDFPKGILYR----LRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTV 145 (434)
Q Consensus 70 ~~i~v~~~~~~~~~~~~~----~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~ 145 (434)
++|+|||+.......... .|...|.+++|+|+ +.+++. ++.++.|++|++.+ ++.+.....|...+.
T Consensus 103 g~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spd-g~~l~s-----gs~d~~i~iwd~~~---~~~~~~~~~h~~~V~ 173 (344)
T 4gqb_B 103 GAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSS-GTQAVS-----GSKDICIKVWDLAQ---QVVLSSYRAHAAQVT 173 (344)
T ss_dssp SEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTT-SSEEEE-----EETTSCEEEEETTT---TEEEEEECCCSSCEE
T ss_pred CEEEEEeccCCCceeEeeccccCCCCCEEEEEECCC-CCEEEE-----EeCCCeEEEEECCC---CcEEEEEcCcCCceE
Confidence 999999998765433322 34567999999998 555553 35567899999988 788888888999999
Q ss_pred EEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeec---CCCCCeEEEEECcCCCEEEEEEccCCCeEE
Q 013871 146 QLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL---RKEGPVHDVQWSYSGSEFAVVYGFMPASAT 222 (434)
Q Consensus 146 ~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l---~~~~~i~~v~wspdg~~~av~~g~~~~~v~ 222 (434)
.+.|++++..+++.++ .|.+.+.| ++... .....+ .+...+.+++|+|++..+++ +|..|+.|+
T Consensus 174 ~~~~~~~~~~~l~s~s--~D~~v~iw---------d~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~l~-sg~~dg~v~ 240 (344)
T 4gqb_B 174 CVAASPHKDSVFLSCS--EDNRILLW---------DTRCP-KPASQIGCSAPGYLPTSLAWHPQQSEVFV-FGDENGTVS 240 (344)
T ss_dssp EEEECSSCTTEEEEEE--TTSCEEEE---------ETTSS-SCEEECC----CCCEEEEEECSSCTTEEE-EEETTSEEE
T ss_pred EEEecCCCCCceeeec--cccccccc---------ccccc-ceeeeeecceeeccceeeeecCCCCcceE-EeccCCcEE
Confidence 9999999987655433 44444433 22222 111112 12457899999997655443 588899999
Q ss_pred EEecc-cceeEEe--CCcCeeEEEECCCC-CeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCE-EE
Q 013871 223 IFNKK-CRPILEL--GSGPYNTVRWNPKG-KFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRY-FM 295 (434)
Q Consensus 223 l~d~~-~~~~~~~--~~~~~~~i~~SP~g-~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~-l~ 295 (434)
+||++ .+.+..+ |...+++++|||+| ++|++++ .||.|+|||+.+++++.. .+| .+..++|||+|+. |+
T Consensus 241 ~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs---~D~~i~vwd~~~~~~~~~-~~H~~~V~~v~~sp~~~~lla 316 (344)
T 4gqb_B 241 LVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLS---EDCSLAVLDSSLSELFRS-QAHRDFVRDATWSPLNHSLLT 316 (344)
T ss_dssp EEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEE---TTSCEEEECTTCCEEEEE-CCCSSCEEEEEECSSSTTEEE
T ss_pred EEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEe---CCCeEEEEECCCCcEEEE-cCCCCCEEEEEEeCCCCeEEE
Confidence 99996 4445544 78999999999998 5788888 567999999999987654 454 5667999999975 56
Q ss_pred EEEcCCceeeCCcEEEEeecCc
Q 013871 296 TATTAPRLQIDNGIKIFHHNGS 317 (434)
Q Consensus 296 tas~~prl~~D~~i~iw~~~g~ 317 (434)
+++. |+.|++|++..+
T Consensus 317 s~s~------D~~v~~w~v~~~ 332 (344)
T 4gqb_B 317 TVGW------DHQVVHHVVPTE 332 (344)
T ss_dssp EEET------TSCEEEEECCC-
T ss_pred EEcC------CCeEEEEECCCC
Confidence 7888 999999998654
No 9
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=6.5e-31 Score=269.18 Aligned_cols=297 Identities=16% Similarity=0.234 Sum_probs=234.2
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF 80 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~ 80 (434)
|.+++|+|+|++|++.+ .|+.|++||. +++.+..+..+. ..+.+++|+||+++++++. ++.|++|+....
T Consensus 265 v~~v~~~~d~~~l~~~~-----~d~~i~~w~~-~~~~~~~~~~h~---~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~ 335 (577)
T 2ymu_A 265 VNGVAFRPDGQTIASAS-----DDKTVKLWNR-NGQLLQTLTGHS---SSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ 335 (577)
T ss_dssp EEEEEECTTSSEEEEEE-----TTSCEEEEET-TSCEEEEECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTSC
T ss_pred EEEEEEcCCCCEEEEEe-----CCCEEEEEeC-CCcEEEEEecCC---CCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC
Confidence 67899999999999998 8899999995 567777776543 5666899999999999885 679999998653
Q ss_pred CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEE
Q 013871 81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVA 160 (434)
Q Consensus 81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~ 160 (434)
. ......+...+.+++++|+ +..+++. ..++.+++|+.. ++.+.....+...+..+.|+|+|+.|+...
T Consensus 336 ~-~~~~~~~~~~v~~~~~s~~-g~~l~~~-----~~dg~v~~~~~~----~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~ 404 (577)
T 2ymu_A 336 H-LQTLTGHSSSVWGVAFSPD-GQTIASA-----SDDKTVKLWNRN----GQLLQTLTGHSSSVRGVAFSPDGQTIASAS 404 (577)
T ss_dssp E-EEEECCCSSCEEEEEECTT-SSEEEEE-----ETTSEEEEEETT----CCEEEEEECCSSCEEEEEECTTSSCEEEEE
T ss_pred e-eEEEeCCCCCEEEEEECCC-CCEEEEE-----eCCCEEEEEcCC----CCEEEEecCCCCCeEEEEECCCCCEEEEEe
Confidence 2 2333445567999999998 4555542 345789999963 566777788888899999999999876532
Q ss_pred EecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeEEe--CCcC
Q 013871 161 QSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL--GSGP 238 (434)
Q Consensus 161 ~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~~--~~~~ 238 (434)
.|... .+++..+. .......+...|.+++|+||++.++ ++..++.+.+||..++.+..+ |...
T Consensus 405 ---~d~~v---------~~~~~~~~-~~~~~~~~~~~v~~~~~s~d~~~l~--~~~~d~~v~~w~~~~~~~~~~~~~~~~ 469 (577)
T 2ymu_A 405 ---DDKTV---------KLWNRNGQ-LLQTLTGHSSSVWGVAFSPDDQTIA--SASDDKTVKLWNRNGQLLQTLTGHSSS 469 (577)
T ss_dssp ---TTSEE---------EEECTTCC-EEEEEECCSSCEEEEEECTTSSEEE--EEETTSEEEEEETTSCEEEEEECCSSC
T ss_pred ---CCCEE---------EEEeCCCC-EEEEecCCCCCeEEEEECCCCCEEE--EEcCCCEEEEEECCCCEEEEEcCCCCC
Confidence 33333 33333332 1222233578999999999999988 467789999999987776665 7889
Q ss_pred eeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecC
Q 013871 239 YNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG 316 (434)
Q Consensus 239 ~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g 316 (434)
+++++|+|+|++|++++ .++.|+|||. +++++..+.+| .+..++|||||++|++++. |+.|+|||++|
T Consensus 470 v~~~~~spd~~~las~~---~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~------dg~v~lwd~~~ 539 (577)
T 2ymu_A 470 VRGVAFSPDGQTIASAS---DDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASD------DKTVKLWNRNG 539 (577)
T ss_dssp EEEEEECTTSCEEEEEE---TTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEET------TSEEEEECTTS
T ss_pred EEEEEEcCCCCEEEEEe---CCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEEC------cCEEEEEeCCC
Confidence 99999999999999998 5679999995 57778888776 5667999999999999999 99999999999
Q ss_pred ceeeee--ecccceeeEEEcCCCCCCCCc
Q 013871 317 SLFFKK--MFDKLFQAEWKPVSPDKFGDI 343 (434)
Q Consensus 317 ~~~~~~--~~~~~~~~~w~p~~~~~~~~~ 343 (434)
+++... +...+..+.|.|++..|++..
T Consensus 540 ~~~~~~~~h~~~v~~~~fs~dg~~l~s~~ 568 (577)
T 2ymu_A 540 QLLQTLTGHSSSVWGVAFSPDGQTIASAS 568 (577)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSCEEEEE
T ss_pred CEEEEEcCCCCCEEEEEEcCCCCEEEEEe
Confidence 887654 567899999999998887653
No 10
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=7.4e-31 Score=247.65 Aligned_cols=276 Identities=13% Similarity=0.094 Sum_probs=210.5
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF 80 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~ 80 (434)
|++|+|||+|++|++++ .|+.|+|||+.+++.++.+..+. ..+.+++|++|+++|++++ |++|++||+...
T Consensus 16 V~~~~fsp~~~~l~s~~-----~dg~v~lWd~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~ 87 (304)
T 2ynn_A 16 VKGIDFHPTEPWVLTTL-----YSGRVELWNYETQVEVRSIQVTE---TPVRAGKFIARKNWIIVGSDDFRIRVFNYNTG 87 (304)
T ss_dssp EEEEEECSSSSEEEEEE-----TTSEEEEEETTTTEEEEEEECCS---SCEEEEEEEGGGTEEEEEETTSEEEEEETTTC
T ss_pred eEEEEECCCCCEEEEEc-----CCCcEEEEECCCCceeEEeeccC---CcEEEEEEeCCCCEEEEECCCCEEEEEECCCC
Confidence 78999999999999999 89999999999999988887654 5677999999999999985 679999999886
Q ss_pred CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCC-CCeEEEE
Q 013871 81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRG-STGLLAV 159 (434)
Q Consensus 81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~-G~~l~~~ 159 (434)
........|...|.+++|+|+ +.+++. ++.++.|++|++.+. .........|...+.++.|+|+ +..++.
T Consensus 88 ~~~~~~~~h~~~v~~~~~~~~-~~~l~s-----gs~D~~v~lWd~~~~--~~~~~~~~~h~~~v~~v~~~p~~~~~l~s- 158 (304)
T 2ynn_A 88 EKVVDFEAHPDYIRSIAVHPT-KPYVLS-----GSDDLTVKLWNWENN--WALEQTFEGHEHFVMCVAFNPKDPSTFAS- 158 (304)
T ss_dssp CEEEEEECCSSCEEEEEECSS-SSEEEE-----EETTSCEEEEEGGGT--TEEEEEECCCCSCEEEEEECTTCTTEEEE-
T ss_pred cEEEEEeCCCCcEEEEEEcCC-CCEEEE-----ECCCCeEEEEECCCC--cchhhhhcccCCcEEEEEECCCCCCEEEE-
Confidence 654555567778999999999 455553 356789999999762 2344556677888999999995 555433
Q ss_pred EEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECc--CCCEEEEEEccCCCeEEEEeccc-ceeEEe--
Q 013871 160 AQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSY--SGSEFAVVYGFMPASATIFNKKC-RPILEL-- 234 (434)
Q Consensus 160 ~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wsp--dg~~~av~~g~~~~~v~l~d~~~-~~~~~~-- 234 (434)
...|.+.+. |.+..... ...+...+...+..++|+| ++..++ ++..|+.|++||++. ..+..+
T Consensus 159 --gs~D~~v~i-------wd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~--s~s~D~~i~iWd~~~~~~~~~~~~ 226 (304)
T 2ynn_A 159 --GCLDRTVKV-------WSLGQSTP-NFTLTTGQERGVNYVDYYPLPDKPYMI--TASDDLTIKIWDYQTKSCVATLEG 226 (304)
T ss_dssp --EETTSEEEE-------EETTCSSC-SEEEECCCTTCEEEEEECCSTTCCEEE--EEETTSEEEEEETTTTEEEEEEEC
T ss_pred --EeCCCeEEE-------EECCCCCc-cceeccCCcCcEEEEEEEEcCCCCEEE--EEcCCCeEEEEeCCCCccceeeCC
Confidence 224444443 32211111 1222233457899999987 566666 688899999999974 344444
Q ss_pred CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCC--EEEEEEcCCceeeCCcEE
Q 013871 235 GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGR--YFMTATTAPRLQIDNGIK 310 (434)
Q Consensus 235 ~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~--~l~tas~~prl~~D~~i~ 310 (434)
|...+++++|+|++++|++++ .+|.|+|||..+++.+..+..+ .+..++|+|+|. +++++ . |+++.
T Consensus 227 h~~~v~~~~~~p~~~~l~s~s---~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg-~------~~g~~ 296 (304)
T 2ynn_A 227 HMSNVSFAVFHPTLPIIISGS---EDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASG-F------DNGFT 296 (304)
T ss_dssp CSSCEEEEEECSSSSEEEEEE---TTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEE-E------TTEEE
T ss_pred CCCCEEEEEECCCCCEEEEEc---CCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEe-c------CCceE
Confidence 788999999999999999999 6679999999999999888775 566799999986 35554 4 88999
Q ss_pred EEeecC
Q 013871 311 IFHHNG 316 (434)
Q Consensus 311 iw~~~g 316 (434)
+|++..
T Consensus 297 ~~~~~~ 302 (304)
T 2ynn_A 297 VLSLGN 302 (304)
T ss_dssp EEECC-
T ss_pred EEEecc
Confidence 998754
No 11
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=7.1e-31 Score=271.65 Aligned_cols=305 Identities=13% Similarity=0.112 Sum_probs=223.9
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCc--EEEEEeecCcCCCCCCeeeecCCCcEEEEecC-----CeEEE
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGE--AVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT-----NEIQF 74 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~--~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~-----~~i~v 74 (434)
|++++|||||++|++++ .|++|+|||+.+++ ....+..+ ...+.+++|+||+++|+++++ +.|++
T Consensus 62 v~~~~~spdg~~lasg~-----~d~~v~lWd~~~~~~~~~~~~~~~---~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~ 133 (611)
T 1nr0_A 62 TTVAKTSPSGYYCASGD-----VHGNVRIWDTTQTTHILKTTIPVF---SGPVKDISWDSESKRIAAVGEGRERFGHVFL 133 (611)
T ss_dssp EEEEEECTTSSEEEEEE-----TTSEEEEEESSSTTCCEEEEEECS---SSCEEEEEECTTSCEEEEEECCSSCSEEEEE
T ss_pred eEEEEECCCCcEEEEEe-----CCCCEEEeECCCCcceeeEeeccc---CCceEEEEECCCCCEEEEEECCCCceeEEEE
Confidence 78999999999999999 89999999997654 34455443 366779999999999998754 26888
Q ss_pred EeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCC
Q 013871 75 FDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGST 154 (434)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~ 154 (434)
||... .......|...|.+++|+|++...++. .+.++.|++|+... .+.+.....|...+.++.|+|+|+
T Consensus 134 wd~~~--~~~~l~gh~~~v~~v~f~p~~~~~l~s-----~s~D~~v~lwd~~~---~~~~~~l~~H~~~V~~v~fspdg~ 203 (611)
T 1nr0_A 134 FDTGT--SNGNLTGQARAMNSVDFKPSRPFRIIS-----GSDDNTVAIFEGPP---FKFKSTFGEHTKFVHSVRYNPDGS 203 (611)
T ss_dssp TTTCC--BCBCCCCCSSCEEEEEECSSSSCEEEE-----EETTSCEEEEETTT---BEEEEEECCCSSCEEEEEECTTSS
T ss_pred eeCCC--CcceecCCCCCceEEEECCCCCeEEEE-----EeCCCeEEEEECCC---CeEeeeeccccCceEEEEECCCCC
Confidence 88543 223345567789999999985545553 35667999999876 666777778888999999999999
Q ss_pred eEEEEEEecccccCceeeccee--EEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccc-ee
Q 013871 155 GLLAVAQSDVDKTNQSYYGESK--LNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PI 231 (434)
Q Consensus 155 ~l~~~~~~~~d~~~~~~~g~~~--l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~-~~ 231 (434)
.|+. ...|.+.+.|..... +..+. .. ......+.+.|.+++|+|+|+.|+ ++..|+.|++||++.. .+
T Consensus 204 ~las---~s~D~~i~lwd~~~g~~~~~~~--~~--~~~~~~h~~~V~~v~~spdg~~l~--s~s~D~~v~lWd~~~~~~~ 274 (611)
T 1nr0_A 204 LFAS---TGGDGTIVLYNGVDGTKTGVFE--DD--SLKNVAHSGSVFGLTWSPDGTKIA--SASADKTIKIWNVATLKVE 274 (611)
T ss_dssp EEEE---EETTSCEEEEETTTCCEEEECB--CT--TSSSCSSSSCEEEEEECTTSSEEE--EEETTSEEEEEETTTTEEE
T ss_pred EEEE---EECCCcEEEEECCCCcEeeeec--cc--cccccccCCCEEEEEECCCCCEEE--EEeCCCeEEEEeCCCCcee
Confidence 7543 335666655432211 00000 00 000114678999999999999998 6778999999998632 11
Q ss_pred E-------------------------------------------E--eCCcCeeEEEECCCCCeEEEEecCCCCCeEEEE
Q 013871 232 L-------------------------------------------E--LGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFW 266 (434)
Q Consensus 232 ~-------------------------------------------~--~~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iw 266 (434)
. . -|...+++++|||+|++|++++ .+|.|++|
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s---~D~~v~~W 351 (611)
T 1nr0_A 275 KTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSAD---AEGHINSW 351 (611)
T ss_dssp EEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE---TTSCEEEE
T ss_pred eeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEe---CCCcEEEE
Confidence 1 1 2567899999999999999999 56799999
Q ss_pred EccCCEEEEEee--------------------------------------------------------------------
Q 013871 267 DYVDGKQLGTTR-------------------------------------------------------------------- 278 (434)
Q Consensus 267 d~~~~~~i~~~~-------------------------------------------------------------------- 278 (434)
|+.+++....+.
T Consensus 352 d~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~ 431 (611)
T 1nr0_A 352 DISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACY 431 (611)
T ss_dssp ETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEES
T ss_pred ECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeC
Confidence 988664432210
Q ss_pred ----------------CCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCcee---e-eeecccceeeEEEcCCCC
Q 013871 279 ----------------AECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLF---F-KKMFDKLFQAEWKPVSPD 338 (434)
Q Consensus 279 ----------------~~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~~---~-~~~~~~~~~~~w~p~~~~ 338 (434)
...+..++|||||++|++++. |+.|+||++.+..+ . ..+...+..++|+|++..
T Consensus 432 ~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~------D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~ 505 (611)
T 1nr0_A 432 KHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQ------DSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAF 505 (611)
T ss_dssp SEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEET------TSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSE
T ss_pred ceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCC------CCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCE
Confidence 012345899999999999999 99999999977533 1 234567999999999988
Q ss_pred CCCC
Q 013871 339 KFGD 342 (434)
Q Consensus 339 ~~~~ 342 (434)
++..
T Consensus 506 las~ 509 (611)
T 1nr0_A 506 LVAT 509 (611)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7765
No 12
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.2e-30 Score=269.95 Aligned_cols=296 Identities=13% Similarity=0.076 Sum_probs=220.0
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF 80 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~ 80 (434)
+.+++|||||++|++.+ ++.|+||++.+++.+..+.++. ..+.+++|||||++||++. |++|+|||+...
T Consensus 21 ~~~~~~spdg~~l~~~~------~~~v~l~~~~~~~~~~~~~~h~---~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~ 91 (611)
T 1nr0_A 21 AVVLGNTPAGDKIQYCN------GTSVYTVPVGSLTDTEIYTEHS---HQTTVAKTSPSGYYCASGDVHGNVRIWDTTQT 91 (611)
T ss_dssp CCCCEECTTSSEEEEEE------TTEEEEEETTCSSCCEEECCCS---SCEEEEEECTTSSEEEEEETTSEEEEEESSST
T ss_pred eeEEeeCCCCCEEEeCC------CCEEEEecCCCcccCeEecCCC---CceEEEEECCCCcEEEEEeCCCCEEEeECCCC
Confidence 46789999999999977 4689999999988888887654 6677999999999999985 679999998653
Q ss_pred CCce--eeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEE
Q 013871 81 PKGI--LYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLA 158 (434)
Q Consensus 81 ~~~~--~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~ 158 (434)
.... ....+...|.+++|+|+ +..++.... .....+.|++|+. +..+.....|...+..+.|+|++...++
T Consensus 92 ~~~~~~~~~~~~~~v~~v~fs~d-g~~l~~~~~-~~~~~~~v~~wd~-----~~~~~~l~gh~~~v~~v~f~p~~~~~l~ 164 (611)
T 1nr0_A 92 THILKTTIPVFSGPVKDISWDSE-SKRIAAVGE-GRERFGHVFLFDT-----GTSNGNLTGQARAMNSVDFKPSRPFRII 164 (611)
T ss_dssp TCCEEEEEECSSSCEEEEEECTT-SCEEEEEEC-CSSCSEEEEETTT-----CCBCBCCCCCSSCEEEEEECSSSSCEEE
T ss_pred cceeeEeecccCCceEEEEECCC-CCEEEEEEC-CCCceeEEEEeeC-----CCCcceecCCCCCceEEEECCCCCeEEE
Confidence 3222 23345567999999999 455544321 1223457888874 4556667788889999999999986444
Q ss_pred EEEecccccCceeecceeEEEEeeCCcceeeeec-CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-cceeEEe--
Q 013871 159 VAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL-RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL-- 234 (434)
Q Consensus 159 ~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l-~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~-~~~~~~~-- 234 (434)
. ...|.+.+.|.... . .....+ .+.+.|.+++|+|||+.|+ ++..|+.|++||+. +..+..+
T Consensus 165 s--~s~D~~v~lwd~~~---------~-~~~~~l~~H~~~V~~v~fspdg~~la--s~s~D~~i~lwd~~~g~~~~~~~~ 230 (611)
T 1nr0_A 165 S--GSDDNTVAIFEGPP---------F-KFKSTFGEHTKFVHSVRYNPDGSLFA--STGGDGTIVLYNGVDGTKTGVFED 230 (611)
T ss_dssp E--EETTSCEEEEETTT---------B-EEEEEECCCSSCEEEEEECTTSSEEE--EEETTSCEEEEETTTCCEEEECBC
T ss_pred E--EeCCCeEEEEECCC---------C-eEeeeeccccCceEEEEECCCCCEEE--EEECCCcEEEEECCCCcEeeeecc
Confidence 3 33566665554322 1 111222 3578999999999999988 67889999999985 3444333
Q ss_pred -------CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEe------------------------------
Q 013871 235 -------GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTT------------------------------ 277 (434)
Q Consensus 235 -------~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~------------------------------ 277 (434)
|.+.+.+++|+|+|++|++++ .|++|+|||+.+++++..+
T Consensus 231 ~~~~~~~h~~~V~~v~~spdg~~l~s~s---~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~ 307 (611)
T 1nr0_A 231 DSLKNVAHSGSVFGLTWSPDGTKIASAS---ADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFIN 307 (611)
T ss_dssp TTSSSCSSSSCEEEEEECTTSSEEEEEE---TTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEE
T ss_pred ccccccccCCCEEEEEECCCCCEEEEEe---CCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEE
Confidence 678899999999999999999 5579999999988765433
Q ss_pred -------------eCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc-eeee---eecccceeeEEEcCC
Q 013871 278 -------------RAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS-LFFK---KMFDKLFQAEWKPVS 336 (434)
Q Consensus 278 -------------~~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~-~~~~---~~~~~~~~~~w~p~~ 336 (434)
.+| .+..++|+|||++|++++. |+.|++||+... +... .+...+..+.|.|..
T Consensus 308 ~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~------D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~ 379 (611)
T 1nr0_A 308 FVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADA------EGHINSWDISTGISNRVFPDVHATMITGIKTTSKG 379 (611)
T ss_dssp EEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET------TSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTS
T ss_pred EEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeC------CCcEEEEECCCCceeeecccCCcceEEEEEECCCC
Confidence 233 4566999999999999999 999999999644 3222 244567888888654
No 13
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-29 Score=243.88 Aligned_cols=286 Identities=17% Similarity=0.223 Sum_probs=215.6
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF 80 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~ 80 (434)
|++|+|||+|++|++++ .|+.|+|||+.+++.+..+..+. ..+.+++|+||+++|+++. ++.|++||+...
T Consensus 35 v~~~~~s~~~~~l~~~~-----~dg~i~vwd~~~~~~~~~~~~h~---~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 106 (369)
T 3zwl_B 35 LTQVKYNKEGDLLFSCS-----KDSSASVWYSLNGERLGTLDGHT---GTIWSIDVDCFTKYCVTGSADYSIKLWDVSNG 106 (369)
T ss_dssp EEEEEECTTSCEEEEEE-----SSSCEEEEETTTCCEEEEECCCS---SCEEEEEECTTSSEEEEEETTTEEEEEETTTC
T ss_pred EEEEEEcCCCCEEEEEe-----CCCEEEEEeCCCchhhhhhhhcC---CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Confidence 78999999999999998 88999999999999998887643 6677999999999999884 679999999876
Q ss_pred CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCC--------Cceeeeeeccc--ceeEEEEC
Q 013871 81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQS--------QPLARRSFFRC--STVQLNWN 150 (434)
Q Consensus 81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~--------~~i~~~~~~~~--~~~~~~ws 150 (434)
....... +...+..+.|+|+ +..+++...+....++.|.+|++...... ..+.....+.. ....+.|+
T Consensus 107 ~~~~~~~-~~~~v~~~~~~~~-~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (369)
T 3zwl_B 107 QCVATWK-SPVPVKRVEFSPC-GNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWS 184 (369)
T ss_dssp CEEEEEE-CSSCEEEEEECTT-SSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEEC
T ss_pred cEEEEee-cCCCeEEEEEccC-CCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEc
Confidence 5433333 4557999999998 55555544333345589999998763211 12233333333 77899999
Q ss_pred CCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeec-CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-
Q 013871 151 RGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL-RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC- 228 (434)
Q Consensus 151 ~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l-~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~- 228 (434)
|+|+.+++.. .|. .++.+++.........+ .+.++|.+++|+|+++.|+ ++..++.|.+||++.
T Consensus 185 ~~~~~l~~~~---~dg---------~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~--~~~~d~~i~v~d~~~~ 250 (369)
T 3zwl_B 185 TKGKYIIAGH---KDG---------KISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFI--TSSRDTNSFLVDVSTL 250 (369)
T ss_dssp GGGCEEEEEE---TTS---------EEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEE--EEETTSEEEEEETTTC
T ss_pred CCCCEEEEEc---CCC---------EEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEE--EecCCceEEEEECCCC
Confidence 9999876532 222 23444444322222222 2478999999999999988 467789999999974
Q ss_pred ceeEEe-CCcCeeEEEECCCCCeEEEEecCCC-----------CCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEE
Q 013871 229 RPILEL-GSGPYNTVRWNPKGKFLCLAGFGNL-----------PGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYF 294 (434)
Q Consensus 229 ~~~~~~-~~~~~~~i~~SP~g~~l~~~~~~~~-----------~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l 294 (434)
..+..+ +...+..+.|+|+|+++++++.++. ...+.+||..+++.+..+.+| .+..++|+|||++|
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 330 (369)
T 3zwl_B 251 QVLKKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSY 330 (369)
T ss_dssp CEEEEEECSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEE
T ss_pred ceeeeecCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEE
Confidence 444444 6788999999999999999884320 117999999999998888876 56669999999999
Q ss_pred EEEEcCCceeeCCcEEEEeecCc
Q 013871 295 MTATTAPRLQIDNGIKIFHHNGS 317 (434)
Q Consensus 295 ~tas~~prl~~D~~i~iw~~~g~ 317 (434)
++++. |+.|+||++...
T Consensus 331 ~s~~~------dg~v~iw~~~~~ 347 (369)
T 3zwl_B 331 ASGGE------DGFIRLHHFEKS 347 (369)
T ss_dssp EEEET------TSEEEEEEECHH
T ss_pred EEEcC------CCeEEEEECccc
Confidence 99999 999999999764
No 14
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=3.8e-30 Score=251.75 Aligned_cols=283 Identities=13% Similarity=0.136 Sum_probs=205.6
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCc---------------CCCCCCeeeecCCCcEEEE
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNM---------------TKTTWPSIRFSSDEAVACR 66 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~---------------~~~~~~~~~~S~d~~~la~ 66 (434)
|.+++|||||++|++.+ ++.++||++.+|+.+..+..+.. +...+.+++|+||+++|++
T Consensus 67 V~~v~fspdg~~la~g~------~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s 140 (393)
T 1erj_A 67 VCCVKFSNDGEYLATGC------NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT 140 (393)
T ss_dssp CCEEEECTTSSEEEEEC------BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred EEEEEECCCCCEEEEEc------CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence 78999999999999865 57899999999998877754321 0012568999999999999
Q ss_pred ec-CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeeccccee
Q 013871 67 MA-TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTV 145 (434)
Q Consensus 67 ~~-~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~ 145 (434)
+. ++.|++||+.+.........|...|.+++|+|++ ..++. .+.++.|++|++.+ ++...... +...+.
T Consensus 141 ~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~-~~l~s-----~s~d~~v~iwd~~~---~~~~~~~~-~~~~v~ 210 (393)
T 1erj_A 141 GAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSG-DKLVS-----GSGDRTVRIWDLRT---GQCSLTLS-IEDGVT 210 (393)
T ss_dssp EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS-SEEEE-----EETTSEEEEEETTT---TEEEEEEE-CSSCEE
T ss_pred EcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCC-CEEEE-----ecCCCcEEEEECCC---CeeEEEEE-cCCCcE
Confidence 85 6799999998754433444566789999999984 44543 34568999999987 55544443 445678
Q ss_pred EEEECC-CCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEE
Q 013871 146 QLNWNR-GSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIF 224 (434)
Q Consensus 146 ~~~ws~-~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~ 224 (434)
.+.|+| +|..|+.. ..|.+.+.|............. .......+...|.+++|+|+|+.|+ +|..|+.|++|
T Consensus 211 ~~~~~~~~~~~l~~~---s~d~~v~iwd~~~~~~~~~~~~--~~~~~~~h~~~v~~v~~~~~g~~l~--s~s~d~~v~~w 283 (393)
T 1erj_A 211 TVAVSPGDGKYIAAG---SLDRAVRVWDSETGFLVERLDS--ENESGTGHKDSVYSVVFTRDGQSVV--SGSLDRSVKLW 283 (393)
T ss_dssp EEEECSTTCCEEEEE---ETTSCEEEEETTTCCEEEEEC--------CCCSSCEEEEEECTTSSEEE--EEETTSEEEEE
T ss_pred EEEEECCCCCEEEEE---cCCCcEEEEECCCCcEEEeecc--cccCCCCCCCCEEEEEECCCCCEEE--EEeCCCEEEEE
Confidence 899999 78775443 2455554443221100000000 0000123467999999999999988 57889999999
Q ss_pred ecccc-------------eeEE--eCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEE
Q 013871 225 NKKCR-------------PILE--LGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEW 287 (434)
Q Consensus 225 d~~~~-------------~~~~--~~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~w 287 (434)
|++.. .... -|...+.+++|+|+|++|++++ .+|.|++||..+++.+..+.+| .+..++|
T Consensus 284 d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs---~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~ 360 (393)
T 1erj_A 284 NLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGS---KDRGVLFWDKKSGNPLLMLQGHRNSVISVAV 360 (393)
T ss_dssp EC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEE---TTSEEEEEETTTCCEEEEEECCSSCEEEEEE
T ss_pred ECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEe---CCCeEEEEECCCCeEEEEECCCCCCEEEEEe
Confidence 98531 1222 2778899999999999999999 6679999999999998888877 4666888
Q ss_pred CC------CCCEEEEEEcCCceeeCCcEEEEeecC
Q 013871 288 SP------DGRYFMTATTAPRLQIDNGIKIFHHNG 316 (434)
Q Consensus 288 sp------dg~~l~tas~~prl~~D~~i~iw~~~g 316 (434)
+| ++.+|++++. |+.|+||++..
T Consensus 361 ~~~~~~~p~~~~l~sgs~------Dg~i~iW~~~~ 389 (393)
T 1erj_A 361 ANGSSLGPEYNVFATGSG------DCKARIWKYKK 389 (393)
T ss_dssp CSSCTTCTTCEEEEEEET------TSEEEEEEEEE
T ss_pred cCCcCcCCCCCEEEEECC------CCcEEECcccc
Confidence 76 7899999999 99999999854
No 15
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.3e-29 Score=239.52 Aligned_cols=275 Identities=11% Similarity=0.122 Sum_probs=210.3
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF 80 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~ 80 (434)
|++++|||+|++|++++ .|+.|+||++.+++.+..+..+. ..+.+++|+||+++|++++ ++.|++||+...
T Consensus 26 v~~~~~s~~~~~l~s~~-----~dg~i~iw~~~~~~~~~~~~~h~---~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~ 97 (312)
T 4ery_A 26 VSSVKFSPNGEWLASSS-----ADKLIKIWGAYDGKFEKTISGHK---LGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 97 (312)
T ss_dssp EEEEEECTTSSEEEEEE-----TTSCEEEEETTTCCEEEEECCCS---SCEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred EEEEEECCCCCEEEEee-----CCCeEEEEeCCCcccchhhccCC---CceEEEEEcCCCCEEEEECCCCEEEEEECCCC
Confidence 78999999999999999 89999999999999888876543 6677999999999999885 679999999876
Q ss_pred CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEE
Q 013871 81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVA 160 (434)
Q Consensus 81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~ 160 (434)
........+...|..+.|+|+ +..++. ++.++.|++|++.+ ++.+.....+...+..+.|+|+|+.++..
T Consensus 98 ~~~~~~~~~~~~v~~~~~~~~-~~~l~s-----~~~d~~i~iwd~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~- 167 (312)
T 4ery_A 98 KCLKTLKGHSNYVFCCNFNPQ-SNLIVS-----GSFDESVRIWDVKT---GKCLKTLPAHSDPVSAVHFNRDGSLIVSS- 167 (312)
T ss_dssp CEEEEEECCSSCEEEEEECSS-SSEEEE-----EETTSCEEEEETTT---CCEEEEECCCSSCEEEEEECTTSSEEEEE-
T ss_pred cEEEEEcCCCCCEEEEEEcCC-CCEEEE-----EeCCCcEEEEECCC---CEEEEEecCCCCcEEEEEEcCCCCEEEEE-
Confidence 544444556677999999998 455543 34567899999987 67777777788889999999999976543
Q ss_pred EecccccCceeecceeEEEEeeCCcce-eeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-ceeEEe--CC
Q 013871 161 QSDVDKTNQSYYGESKLNYLTTDGTHE-GLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL--GS 236 (434)
Q Consensus 161 ~~~~d~~~~~~~g~~~l~~l~~~~~~~-~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~-~~~~~~--~~ 236 (434)
..|...+ .+++..... ..+......++..++|+|+++.|+ ++..++.|++||++. ..+..+ +.
T Consensus 168 --~~d~~i~---------~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~d~~i~iwd~~~~~~~~~~~~~~ 234 (312)
T 4ery_A 168 --SYDGLCR---------IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL--AATLDNTLKLWDYSKGKCLKTYTGHK 234 (312)
T ss_dssp --ETTSCEE---------EEETTTCCEEEEECCSSCCCEEEEEECTTSSEEE--EEETTTEEEEEETTTTEEEEEECSSC
T ss_pred --eCCCcEE---------EEECCCCceeeEEeccCCCceEEEEECCCCCEEE--EEcCCCeEEEEECCCCcEEEEEEecC
Confidence 2343333 333322211 112223457899999999999988 477789999999964 344444 33
Q ss_pred cCe---eEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEc-CCceeeCCcEE
Q 013871 237 GPY---NTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATT-APRLQIDNGIK 310 (434)
Q Consensus 237 ~~~---~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~-~prl~~D~~i~ 310 (434)
... ......+++++|++++ .+|.|++||+.+++.+..+.+| .+..++|+|++.+|++++. . |+.|+
T Consensus 235 ~~~~~~~~~~~~~~~~~l~sg~---~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~-----d~~i~ 306 (312)
T 4ery_A 235 NEKYCIFANFSVTGGKWIVSGS---EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALEN-----DKTIK 306 (312)
T ss_dssp CSSSCCCEEEECSSSCEEEECC---TTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTT-----TCCEE
T ss_pred CceEEEEEEEEeCCCcEEEEEC---CCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccC-----CccEE
Confidence 322 2233446788999888 5679999999999999998877 4566999999999999972 2 89999
Q ss_pred EEeec
Q 013871 311 IFHHN 315 (434)
Q Consensus 311 iw~~~ 315 (434)
||+.+
T Consensus 307 ~W~~d 311 (312)
T 4ery_A 307 LWKSD 311 (312)
T ss_dssp EEECC
T ss_pred EecCC
Confidence 99864
No 16
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.3e-29 Score=240.83 Aligned_cols=273 Identities=14% Similarity=0.177 Sum_probs=204.8
Q ss_pred cceEEecCCC-cEEEEEecCCCCCCCcEEEEEcCC-----CcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEE
Q 013871 2 LLLLTCLRVG-LIIQTFQKSSTPQEKNVILWKTET-----GEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQF 74 (434)
Q Consensus 2 V~~l~fSP~g-~~L~t~~~~~~~~d~~v~iWd~~~-----g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v 74 (434)
|++|+|||++ ++|+|++ .|+.|+||++.+ +.++..+..+. ..+.+++|+||+++|++++ |++|++
T Consensus 20 V~~l~~~~~~~~~l~s~s-----~D~~v~~W~~~~~~~~~~~~~~~~~~h~---~~v~~~~~s~dg~~l~s~s~D~~v~~ 91 (319)
T 3frx_A 20 VTSLATSAGQPNLLLSAS-----RDKTLISWKLTGDDQKFGVPVRSFKGHS---HIVQDCTLTADGAYALSASWDKTLRL 91 (319)
T ss_dssp EEEEEECSSCTTEEEEEE-----TTSEEEEEEEEEETTEEEEEEEEEECCS---SCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred EEEEEccCCCccEEEEec-----CCccEEEecCCCCCccccccceEEeCCc---ccEEEEEECCCCCEEEEEeCCCEEEE
Confidence 7899999965 8999999 899999999864 33456666543 6777999999999999885 689999
Q ss_pred EeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCC
Q 013871 75 FDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGST 154 (434)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~ 154 (434)
||+...........|...|.+++|+|+ +..++. ++.++.|++|++. +..+.....+...+..+.|+|.+.
T Consensus 92 wd~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s-----~s~D~~i~vwd~~----~~~~~~~~~h~~~v~~~~~~~~~~ 161 (319)
T 3frx_A 92 WDVATGETYQRFVGHKSDVMSVDIDKK-ASMIIS-----GSRDKTIKVWTIK----GQCLATLLGHNDWVSQVRVVPNEK 161 (319)
T ss_dssp EETTTTEEEEEEECCSSCEEEEEECTT-SCEEEE-----EETTSCEEEEETT----SCEEEEECCCSSCEEEEEECCC--
T ss_pred EECCCCCeeEEEccCCCcEEEEEEcCC-CCEEEE-----EeCCCeEEEEECC----CCeEEEEeccCCcEEEEEEccCCC
Confidence 999876544444556778999999998 455543 3556799999985 356666777888888999998643
Q ss_pred e-----EEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-
Q 013871 155 G-----LLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC- 228 (434)
Q Consensus 155 ~-----l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~- 228 (434)
. +++ +...|...+.| ++...........+..+|.+++|+|+|+.|+ ++..|+.|++||++.
T Consensus 162 ~~~~~~~l~--s~~~d~~i~~w---------d~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~--s~~~dg~i~iwd~~~~ 228 (319)
T 3frx_A 162 ADDDSVTII--SAGNDKMVKAW---------NLNQFQIEADFIGHNSNINTLTASPDGTLIA--SAGKDGEIMLWNLAAK 228 (319)
T ss_dssp ----CCEEE--EEETTSCEEEE---------ETTTTEEEEEECCCCSCEEEEEECTTSSEEE--EEETTCEEEEEETTTT
T ss_pred CCCCccEEE--EEeCCCEEEEE---------ECCcchhheeecCCCCcEEEEEEcCCCCEEE--EEeCCCeEEEEECCCC
Confidence 1 222 22244444433 2222211122234578999999999999998 578899999999964
Q ss_pred ceeEEe-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC----------CceEEEECCCCCEEEEE
Q 013871 229 RPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE----------CSVTSEWSPDGRYFMTA 297 (434)
Q Consensus 229 ~~~~~~-~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~----------~~~~~~wspdg~~l~ta 297 (434)
..+..+ +...+.+++|+|+|.+|+++.. +.+++|+++....+..+..+ .+..++|||||++|+++
T Consensus 229 ~~~~~~~~~~~v~~~~~sp~~~~la~~~~----~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg 304 (319)
T 3frx_A 229 KAMYTLSAQDEVFSLAFSPNRYWLAAATA----TGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAG 304 (319)
T ss_dssp EEEEEEECCSCEEEEEECSSSSEEEEEET----TEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEE
T ss_pred cEEEEecCCCcEEEEEEcCCCCEEEEEcC----CCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEe
Confidence 444454 5678999999999999988763 35999999988777665421 45579999999999999
Q ss_pred EcCCceeeCCcEEEEeec
Q 013871 298 TTAPRLQIDNGIKIFHHN 315 (434)
Q Consensus 298 s~~prl~~D~~i~iw~~~ 315 (434)
+. |+.|+||++.
T Consensus 305 ~~------Dg~i~vWd~~ 316 (319)
T 3frx_A 305 YT------DNVIRVWQVM 316 (319)
T ss_dssp ET------TSCEEEEEEE
T ss_pred ec------CceEEEEEEe
Confidence 99 9999999984
No 17
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.98 E-value=1.5e-29 Score=240.13 Aligned_cols=273 Identities=12% Similarity=0.130 Sum_probs=209.6
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEE---EEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeC
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAV---YQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDT 77 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~---~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~ 77 (434)
|++++|||+|++|++.+ |+.|+|||+.+++.. ..+... .+...+.+++|+||+++|+++. ++.|++|++
T Consensus 54 v~~~~~~~~~~~l~~~~------dg~i~iw~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~ 126 (337)
T 1gxr_A 54 VCAVTISNPTRHVYTGG------KGCVKVWDISHPGNKSPVSQLDCL-NRDNYIRSCKLLPDGCTLIVGGEASTLSIWDL 126 (337)
T ss_dssp CCEEEECSSSSEEEEEC------BSEEEEEETTSTTCCSCSEEEECS-CTTSBEEEEEECTTSSEEEEEESSSEEEEEEC
T ss_pred eEEEEEecCCcEEEEcC------CCeEEEEECCCCCceeeeeccccc-CCCCcEEEEEEcCCCCEEEEEcCCCcEEEEEC
Confidence 78999999999999865 689999999887532 333211 1336677999999999998885 689999999
Q ss_pred CCCCCcee--eeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCe
Q 013871 78 TDFPKGIL--YRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTG 155 (434)
Q Consensus 78 ~~~~~~~~--~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~ 155 (434)
........ ...+...+..+.|+|+ +..+++- +.++.|++|++.+ .+.+.....+...+..+.|+|+|+.
T Consensus 127 ~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~-----~~dg~v~~~d~~~---~~~~~~~~~~~~~i~~~~~~~~~~~ 197 (337)
T 1gxr_A 127 AAPTPRIKAELTSSAPACYALAISPD-SKVCFSC-----CSDGNIAVWDLHN---QTLVRQFQGHTDGASCIDISNDGTK 197 (337)
T ss_dssp CCC--EEEEEEECSSSCEEEEEECTT-SSEEEEE-----ETTSCEEEEETTT---TEEEEEECCCSSCEEEEEECTTSSE
T ss_pred CCCCcceeeecccCCCceEEEEECCC-CCEEEEE-----eCCCcEEEEeCCC---CceeeeeecccCceEEEEECCCCCE
Confidence 87552222 2334557999999998 4555432 3457899999987 6777777778888999999999998
Q ss_pred EEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeEEe-
Q 013871 156 LLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL- 234 (434)
Q Consensus 156 l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~~- 234 (434)
+++.. .|.. ++.++.... .....+...+++.+++|+|+++.+++ +..++.+.+||++......+
T Consensus 198 l~~~~---~dg~---------i~~~d~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~--~~~~~~i~~~~~~~~~~~~~~ 262 (337)
T 1gxr_A 198 LWTGG---LDNT---------VRSWDLREG-RQLQQHDFTSQIFSLGYCPTGEWLAV--GMESSNVEVLHVNKPDKYQLH 262 (337)
T ss_dssp EEEEE---TTSE---------EEEEETTTT-EEEEEEECSSCEEEEEECTTSSEEEE--EETTSCEEEEETTSSCEEEEC
T ss_pred EEEEe---cCCc---------EEEEECCCC-ceEeeecCCCceEEEEECCCCCEEEE--EcCCCcEEEEECCCCCeEEEc
Confidence 76532 2222 344444433 23333445788999999999999884 66788999999986655554
Q ss_pred -CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC-CceEEEECCCCCEEEEEEcCCceeeCCcEEEE
Q 013871 235 -GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIF 312 (434)
Q Consensus 235 -~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-~~~~~~wspdg~~l~tas~~prl~~D~~i~iw 312 (434)
+...+.++.|+|+|++|++++ .+|.|++||+.+++.+....+. .+..++|+|||++|++++. |+.|+||
T Consensus 263 ~~~~~v~~~~~~~~~~~l~~~~---~dg~i~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------dg~i~iw 333 (337)
T 1gxr_A 263 LHESCVLSLKFAYCGKWFVSTG---KDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSG------DKKATVY 333 (337)
T ss_dssp CCSSCEEEEEECTTSSEEEEEE---TTSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEET------TSCEEEE
T ss_pred CCccceeEEEECCCCCEEEEec---CCCcEEEEECCCCeEEEEecCCCcEEEEEECCCCCEEEEecC------CCeEEEE
Confidence 678899999999999999998 5679999999999877665544 6667999999999999999 9999999
Q ss_pred ee
Q 013871 313 HH 314 (434)
Q Consensus 313 ~~ 314 (434)
++
T Consensus 334 ~~ 335 (337)
T 1gxr_A 334 EV 335 (337)
T ss_dssp EE
T ss_pred EE
Confidence 96
No 18
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=99.98 E-value=2.6e-29 Score=257.24 Aligned_cols=297 Identities=16% Similarity=0.223 Sum_probs=231.0
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF 80 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~ 80 (434)
|.+++|||+|++|++.+ .|+.|++||. +++.+..+..+. ..+.+++|+||+++++++. ++.|++|+...
T Consensus 224 v~~~~~s~dg~~l~~~~-----~d~~i~~w~~-~~~~~~~~~~~~---~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~- 293 (577)
T 2ymu_A 224 VRGVAFSPDGQTIASAS-----DDKTVKLWNR-NGQLLQTLTGHS---SSVNGVAFRPDGQTIASASDDKTVKLWNRNG- 293 (577)
T ss_dssp EEEEEECTTSSCEEEEE-----TTSCEEEECT-TSCEEEEECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTS-
T ss_pred EEEEEECCCCCEEEEEe-----CCCEEEEEeC-CCCEEEEEecCC---CCEEEEEEcCCCCEEEEEeCCCEEEEEeCCC-
Confidence 67899999999999998 8999999995 577777776543 6677999999999999885 67999999754
Q ss_pred CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEE
Q 013871 81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVA 160 (434)
Q Consensus 81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~ 160 (434)
........+...|.+++++|+ +..++.. +.++.|++|++.. ..+.....+...+..+.|+|+|+.|+...
T Consensus 294 ~~~~~~~~h~~~v~~~~~~~~-~~~l~t~-----~~d~~i~~w~~~~----~~~~~~~~~~~~v~~~~~s~~g~~l~~~~ 363 (577)
T 2ymu_A 294 QLLQTLTGHSSSVWGVAFSPD-GQTIASA-----SDDKTVKLWNRNG----QHLQTLTGHSSSVWGVAFSPDGQTIASAS 363 (577)
T ss_dssp CEEEEECCCSSCEEEEEECTT-SSEEEEE-----ETTSCEEEEETTS----CEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred cEEEEEecCCCCeEEEEECCC-CCEEEEE-----eCCCeEEEEeCCC----CeeEEEeCCCCCEEEEEECCCCCEEEEEe
Confidence 222333445668999999998 4555542 3457899999754 45666677788888999999999876532
Q ss_pred EecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeEEe--CCcC
Q 013871 161 QSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL--GSGP 238 (434)
Q Consensus 161 ~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~~--~~~~ 238 (434)
.|... .+++..+.. ......+...|.+++|+|||+.|+ ++..++.|.+||..++.+..+ |...
T Consensus 364 ---~dg~v---------~~~~~~~~~-~~~~~~~~~~v~~~~~s~dg~~l~--~~~~d~~v~~~~~~~~~~~~~~~~~~~ 428 (577)
T 2ymu_A 364 ---DDKTV---------KLWNRNGQL-LQTLTGHSSSVRGVAFSPDGQTIA--SASDDKTVKLWNRNGQLLQTLTGHSSS 428 (577)
T ss_dssp ---TTSEE---------EEEETTCCE-EEEEECCSSCEEEEEECTTSSCEE--EEETTSEEEEECTTCCEEEEEECCSSC
T ss_pred ---CCCEE---------EEEcCCCCE-EEEecCCCCCeEEEEECCCCCEEE--EEeCCCEEEEEeCCCCEEEEecCCCCC
Confidence 23332 223333321 111223478999999999999988 577789999999887766655 7889
Q ss_pred eeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecC
Q 013871 239 YNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG 316 (434)
Q Consensus 239 ~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g 316 (434)
+.+++|+|++++|++++ .+|.|++||.. ++.+..+..| .+..++|+|||++|++++. |+.|+||+.+|
T Consensus 429 v~~~~~s~d~~~l~~~~---~d~~v~~w~~~-~~~~~~~~~~~~~v~~~~~spd~~~las~~~------d~~i~iw~~~~ 498 (577)
T 2ymu_A 429 VWGVAFSPDDQTIASAS---DDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASD------DKTVKLWNRNG 498 (577)
T ss_dssp EEEEEECTTSSEEEEEE---TTSEEEEEETT-SCEEEEEECCSSCEEEEEECTTSCEEEEEET------TSEEEEEETTS
T ss_pred eEEEEECCCCCEEEEEc---CCCEEEEEECC-CCEEEEEcCCCCCEEEEEEcCCCCEEEEEeC------CCEEEEEcCCC
Confidence 99999999999999998 56799999974 5666666665 5666999999999999999 99999999999
Q ss_pred ceeeee--ecccceeeEEEcCCCCCCCCc
Q 013871 317 SLFFKK--MFDKLFQAEWKPVSPDKFGDI 343 (434)
Q Consensus 317 ~~~~~~--~~~~~~~~~w~p~~~~~~~~~ 343 (434)
+++... +...+..++|.|++..|+...
T Consensus 499 ~~~~~~~~h~~~v~~l~~s~dg~~l~s~~ 527 (577)
T 2ymu_A 499 QLLQTLTGHSSSVRGVAFSPDGQTIASAS 527 (577)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSCEEEEE
T ss_pred CEEEEEeCCCCCEEEEEEcCCCCEEEEEE
Confidence 887654 456899999999998887653
No 19
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.4e-29 Score=247.99 Aligned_cols=301 Identities=11% Similarity=0.159 Sum_probs=218.2
Q ss_pred cceEEecCCCc-EEEEEecCCCCCCCcEEEEEc----CCCc------EEEEEeecCc-------CCCCCCeeeecCCCcE
Q 013871 2 LLLLTCLRVGL-IIQTFQKSSTPQEKNVILWKT----ETGE------AVYQLFQKNM-------TKTTWPSIRFSSDEAV 63 (434)
Q Consensus 2 V~~l~fSP~g~-~L~t~~~~~~~~d~~v~iWd~----~~g~------~~~~~~~~~~-------~~~~~~~~~~S~d~~~ 63 (434)
|++++|||+|+ +|++++ .|+.|+|||+ .+++ ....+...-. +...+.+++|+||+++
T Consensus 48 v~~~~~s~~~~~~l~~~~-----~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 122 (425)
T 1r5m_A 48 IVSSTWNPLDESILAYGE-----KNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNS 122 (425)
T ss_dssp CSEEEECSSCTTEEEEEE-----TBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSE
T ss_pred eEEEEECCCCCcEEEEec-----CCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCE
Confidence 78999999999 999999 8899999999 8888 4555443100 2346779999999999
Q ss_pred EEEec-CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeeccc
Q 013871 64 ACRMA-TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRC 142 (434)
Q Consensus 64 la~~~-~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~ 142 (434)
|+++. ++.|++|+... ........+...|.++.|+|+ +..+++. +.++.|++|++.+ +..+.....+..
T Consensus 123 l~~~~~dg~i~i~~~~~-~~~~~~~~~~~~v~~~~~~~~-~~~l~~~-----~~d~~i~iwd~~~---~~~~~~~~~~~~ 192 (425)
T 1r5m_A 123 IVTGVENGELRLWNKTG-ALLNVLNFHRAPIVSVKWNKD-GTHIISM-----DVENVTILWNVIS---GTVMQHFELKET 192 (425)
T ss_dssp EEEEETTSCEEEEETTS-CEEEEECCCCSCEEEEEECTT-SSEEEEE-----ETTCCEEEEETTT---TEEEEEECCC--
T ss_pred EEEEeCCCeEEEEeCCC-CeeeeccCCCccEEEEEECCC-CCEEEEE-----ecCCeEEEEECCC---CcEEEEeecccc
Confidence 99885 67999999432 322333445667999999998 4555432 3457899999987 666666665555
Q ss_pred c---------------eeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCC
Q 013871 143 S---------------TVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSG 207 (434)
Q Consensus 143 ~---------------~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg 207 (434)
. ...+.|++++. +++. . .|. .++.++............+.++|.+++|+|++
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~--~~g---------~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~ 259 (425)
T 1r5m_A 193 GGSSINAENHSGDGSLGVDVEWVDDDK-FVIP-G--PKG---------AIFVYQITEKTPTGKLIGHHGPISVLEFNDTN 259 (425)
T ss_dssp -------------CCCBSCCEEEETTE-EEEE-C--GGG---------CEEEEETTCSSCSEEECCCSSCEEEEEEETTT
T ss_pred CccceeeccccCCcceeeEEEEcCCCE-EEEE-c--CCC---------eEEEEEcCCCceeeeeccCCCceEEEEECCCC
Confidence 4 77888998865 2221 1 222 24444444432222222457899999999999
Q ss_pred CEEEEEEccCCCeEEEEeccc-ceeEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--Cc
Q 013871 208 SEFAVVYGFMPASATIFNKKC-RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CS 282 (434)
Q Consensus 208 ~~~av~~g~~~~~v~l~d~~~-~~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~ 282 (434)
+.|+ ++..++.+.+||++. ..+..+ +...+.++.|+|+| +|++++ .+|.|++||+.+++.+..+..+ .+
T Consensus 260 ~~l~--~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~i 333 (425)
T 1r5m_A 260 KLLL--SASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCS---MDGSVRLWSLKQNTLLALSIVDGVPI 333 (425)
T ss_dssp TEEE--EEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEE---TTSEEEEEETTTTEEEEEEECTTCCE
T ss_pred CEEE--EEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEe---CCCcEEEEECCCCcEeEecccCCccE
Confidence 9888 467789999999864 334444 67899999999999 888888 5679999999999998888765 56
Q ss_pred eEEEECCCCCEEEEEEcCCceeeCCcEEEEeecC-c--------------------eeeeeec--c--cceeeEEEcCCC
Q 013871 283 VTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG-S--------------------LFFKKMF--D--KLFQAEWKPVSP 337 (434)
Q Consensus 283 ~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g-~--------------------~~~~~~~--~--~~~~~~w~p~~~ 337 (434)
..++|+|+|++|++++. |+.|+||++.. . ++..... . .+..+.|.|++.
T Consensus 334 ~~~~~s~~~~~l~~~~~------dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 407 (425)
T 1r5m_A 334 FAGRISQDGQKYAVAFM------DGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGN 407 (425)
T ss_dssp EEEEECTTSSEEEEEET------TSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSS
T ss_pred EEEEEcCCCCEEEEEEC------CCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCc
Confidence 67999999999999999 99999999953 3 3444332 2 789999999987
Q ss_pred CCCCC
Q 013871 338 DKFGD 342 (434)
Q Consensus 338 ~~~~~ 342 (434)
.++..
T Consensus 408 ~l~~~ 412 (425)
T 1r5m_A 408 KISVA 412 (425)
T ss_dssp EEEEE
T ss_pred eEEEE
Confidence 66554
No 20
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.97 E-value=8.3e-29 Score=239.90 Aligned_cols=282 Identities=11% Similarity=0.075 Sum_probs=191.4
Q ss_pred cceEEecCCCcEEEEEecCCC--CCCCcEEEEEcCCCcE--------EEEEeecCcCCCCCCeeeecCCCcEEEEec---
Q 013871 2 LLLLTCLRVGLIIQTFQKSST--PQEKNVILWKTETGEA--------VYQLFQKNMTKTTWPSIRFSSDEAVACRMA--- 68 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~--~~d~~v~iWd~~~g~~--------~~~~~~~~~~~~~~~~~~~S~d~~~la~~~--- 68 (434)
|++++|||||++|++++.... .-++.|+||++..+.. ...+.... +...+.++ ++++..++.+.
T Consensus 17 V~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~-~~~~v~s~--~~~~~~~~~g~~~~ 93 (365)
T 4h5i_A 17 AYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALED-NDDSPTAI--DASKGIILVGCNEN 93 (365)
T ss_dssp EEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCT-TSCCCCEE--EEETTEEEEECCCC
T ss_pred EEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccC-CCCceEEE--EeCCCEEEEEECCC
Confidence 789999999999999873211 1245699999875531 22222221 22444454 55666666542
Q ss_pred ---------CCeEEEEeCCCCCCceee--eee-------cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCC
Q 013871 69 ---------TNEIQFFDTTDFPKGILY--RLR-------VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQ 130 (434)
Q Consensus 69 ---------~~~i~v~~~~~~~~~~~~--~~~-------~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~ 130 (434)
++.|++|++......... ... ...++.++|||+ +.++++. +++.++.|+||++.+
T Consensus 94 ~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpD-g~~la~a---s~~~d~~i~iwd~~~--- 166 (365)
T 4h5i_A 94 STKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISRE-GTVAAIA---SSKVPAIMRIIDPSD--- 166 (365)
T ss_dssp HHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTT-SSCEEEE---ESCSSCEEEEEETTT---
T ss_pred ccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCC-CCEEEEE---ECCCCCEEEEeECCC---
Confidence 457999997654321111 111 123778999999 4555442 245678999999988
Q ss_pred CCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCccee-e-eecCCCCCeEEEEECcCCC
Q 013871 131 SQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEG-L-VPLRKEGPVHDVQWSYSGS 208 (434)
Q Consensus 131 ~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~-~-v~l~~~~~i~~v~wspdg~ 208 (434)
.+.+.... +...+..+.|+|+|+.|+... +.. +..+........ . ....+...|.+++|+|+|+
T Consensus 167 ~~~~~~~~-~~~~V~~v~fspdg~~l~s~s----~~~---------~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~ 232 (365)
T 4h5i_A 167 LTEKFEIE-TRGEVKDLHFSTDGKVVAYIT----GSS---------LEVISTVTGSCIARKTDFDKNWSLSKINFIADDT 232 (365)
T ss_dssp TEEEEEEE-CSSCCCEEEECTTSSEEEEEC----SSC---------EEEEETTTCCEEEEECCCCTTEEEEEEEEEETTE
T ss_pred CcEEEEeC-CCCceEEEEEccCCceEEecc----cee---------EEEEEeccCcceeeeecCCCCCCEEEEEEcCCCC
Confidence 66666654 667789999999999876541 211 222322222111 1 1223467899999999999
Q ss_pred EEEEEEccCCC--eEEEEecccce-----eEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEe-e
Q 013871 209 EFAVVYGFMPA--SATIFNKKCRP-----ILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTT-R 278 (434)
Q Consensus 209 ~~av~~g~~~~--~v~l~d~~~~~-----~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~-~ 278 (434)
.++..+..... .+.+||+.... ...+ +...+++++|||||++||+|+ .||.|+|||+++++++..+ .
T Consensus 233 ~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs---~D~~V~iwd~~~~~~~~~~~~ 309 (365)
T 4h5i_A 233 VLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLAS---NDNSIALVKLKDLSMSKIFKQ 309 (365)
T ss_dssp EEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEE---TTSCEEEEETTTTEEEEEETT
T ss_pred EEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEc---CCCEEEEEECCCCcEEEEecC
Confidence 99864433222 56778875322 2223 678899999999999999999 5579999999999999875 5
Q ss_pred CC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecC
Q 013871 279 AE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG 316 (434)
Q Consensus 279 ~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g 316 (434)
+| .++.++|||||++|++++. |++||||++..
T Consensus 310 gH~~~V~~v~fSpdg~~laS~S~------D~tvrvw~ip~ 343 (365)
T 4h5i_A 310 AHSFAITEVTISPDSTYVASVSA------ANTIHIIKLPL 343 (365)
T ss_dssp SSSSCEEEEEECTTSCEEEEEET------TSEEEEEECCT
T ss_pred cccCCEEEEEECCCCCEEEEEeC------CCeEEEEEcCC
Confidence 56 5677999999999999999 99999999843
No 21
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.5e-29 Score=246.25 Aligned_cols=272 Identities=15% Similarity=0.156 Sum_probs=209.3
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF 80 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~ 80 (434)
|.+++|||+|++|++++ .|+.|+||| .+++.+..+..+. ..+.+++|+||+++|+++. ++.|++|++...
T Consensus 111 v~~~~~s~~~~~l~~~~-----~dg~i~i~~-~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 181 (425)
T 1r5m_A 111 VTCLAWSHDGNSIVTGV-----ENGELRLWN-KTGALLNVLNFHR---APIVSVKWNKDGTHIISMDVENVTILWNVISG 181 (425)
T ss_dssp EEEEEECTTSSEEEEEE-----TTSCEEEEE-TTSCEEEEECCCC---SCEEEEEECTTSSEEEEEETTCCEEEEETTTT
T ss_pred eEEEEEcCCCCEEEEEe-----CCCeEEEEe-CCCCeeeeccCCC---ccEEEEEECCCCCEEEEEecCCeEEEEECCCC
Confidence 78999999999999999 889999999 7788888876543 6677999999999998874 689999999775
Q ss_pred CCceeeeeecCC---------------eeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeeccccee
Q 013871 81 PKGILYRLRVPG---------------VAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTV 145 (434)
Q Consensus 81 ~~~~~~~~~~~~---------------v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~ 145 (434)
........+... +..+.|+|+ +. +++ .+..+.|++|++.. ...+.....+...+.
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~-----~~~~g~i~~~d~~~---~~~~~~~~~~~~~i~ 251 (425)
T 1r5m_A 182 TVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDD-DK-FVI-----PGPKGAIFVYQITE---KTPTGKLIGHHGPIS 251 (425)
T ss_dssp EEEEEECCC---------------CCCBSCCEEEET-TE-EEE-----ECGGGCEEEEETTC---SSCSEEECCCSSCEE
T ss_pred cEEEEeeccccCccceeeccccCCcceeeEEEEcCC-CE-EEE-----EcCCCeEEEEEcCC---CceeeeeccCCCceE
Confidence 432222233333 788889987 33 322 24567899999987 677777777888899
Q ss_pred EEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEe
Q 013871 146 QLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFN 225 (434)
Q Consensus 146 ~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d 225 (434)
.+.|+|+|+.|++.. .|.. ++.++............+...|.+++|+|++ .++ ++..++.+.+||
T Consensus 252 ~~~~~~~~~~l~~~~---~d~~---------i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~--~~~~d~~i~i~d 316 (425)
T 1r5m_A 252 VLEFNDTNKLLLSAS---DDGT---------LRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVI--SCSMDGSVRLWS 316 (425)
T ss_dssp EEEEETTTTEEEEEE---TTSC---------EEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEE--EEETTSEEEEEE
T ss_pred EEEECCCCCEEEEEc---CCCE---------EEEEECCCCccceEecCCCccEEEEEECCCC-EEE--EEeCCCcEEEEE
Confidence 999999999765532 2322 3334433322222222357899999999999 555 577789999999
Q ss_pred ccc-ceeEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCE--------------------EEEEeeCC--
Q 013871 226 KKC-RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK--------------------QLGTTRAE-- 280 (434)
Q Consensus 226 ~~~-~~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~--------------------~i~~~~~~-- 280 (434)
++. ..+..+ +...+.+++|+|+|++|++++ .+|.|.+||+.+++ .+..+..+
T Consensus 317 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~---~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (425)
T 1r5m_A 317 LKQNTLLALSIVDGVPIFAGRISQDGQKYAVAF---MDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQD 393 (425)
T ss_dssp TTTTEEEEEEECTTCCEEEEEECTTSSEEEEEE---TTSCEEEEECHHHHC--------------CEECCEEEEECCTTC
T ss_pred CCCCcEeEecccCCccEEEEEEcCCCCEEEEEE---CCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCccc
Confidence 964 334433 678999999999999999998 56799999999877 88888877
Q ss_pred --CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecC
Q 013871 281 --CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG 316 (434)
Q Consensus 281 --~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g 316 (434)
.+..++|+|||++|++++. |+.|+||++.|
T Consensus 394 ~~~v~~~~~s~~~~~l~~~~~------dg~i~iw~~~g 425 (425)
T 1r5m_A 394 NDYIFDLSWNCAGNKISVAYS------LQEGSVVAIPG 425 (425)
T ss_dssp CCCEEEEEECTTSSEEEEEES------SSCCEEEECCC
T ss_pred CCceEEEEccCCCceEEEEec------CceEEEEeecC
Confidence 5667999999999999999 99999999876
No 22
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.97 E-value=7.8e-29 Score=235.22 Aligned_cols=301 Identities=9% Similarity=0.053 Sum_probs=218.0
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCC
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFP 81 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~ 81 (434)
|.+++|||||++|++.. .++.+.+|+............ |...+.+++|+||+++++++.++.|++|++....
T Consensus 12 v~~~~~s~dg~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~---h~~~v~~~~~~~~~~~l~~~~dg~i~iw~~~~~~ 83 (337)
T 1gxr_A 12 AYSFHVTADGQMQPVPF-----PPDALIGPGIPRHARQINTLN---HGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPG 83 (337)
T ss_dssp CCEEEECSSSCEEECCC-----CTTSSSSTTCCSEEEEEEEEC---CSSCCCEEEECSSSSEEEEECBSEEEEEETTSTT
T ss_pred eeEEEECCCCCEEEeec-----CCCcEeccccCCccccceecc---CCCceEEEEEecCCcEEEEcCCCeEEEEECCCCC
Confidence 67899999999999766 344455555443333333223 3367789999999999999999999999997644
Q ss_pred Cceee-e----eecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCC--ceeeeeecccceeEEEECCCCC
Q 013871 82 KGILY-R----LRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQ--PLARRSFFRCSTVQLNWNRGST 154 (434)
Q Consensus 82 ~~~~~-~----~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~--~i~~~~~~~~~~~~~~ws~~G~ 154 (434)
..... . .+...|.+++|+|+ +..+++. +..+.|++|++.. .. .......+...+..+.|+|+|+
T Consensus 84 ~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~-----~~d~~i~~~d~~~---~~~~~~~~~~~~~~~i~~~~~~~~~~ 154 (337)
T 1gxr_A 84 NKSPVSQLDCLNRDNYIRSCKLLPD-GCTLIVG-----GEASTLSIWDLAA---PTPRIKAELTSSAPACYALAISPDSK 154 (337)
T ss_dssp CCSCSEEEECSCTTSBEEEEEECTT-SSEEEEE-----ESSSEEEEEECCC---C--EEEEEEECSSSCEEEEEECTTSS
T ss_pred ceeeeecccccCCCCcEEEEEEcCC-CCEEEEE-----cCCCcEEEEECCC---CCcceeeecccCCCceEEEEECCCCC
Confidence 22211 1 23457999999998 4555442 3457999999987 44 4455556677788999999999
Q ss_pred eEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccc-eeEE
Q 013871 155 GLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PILE 233 (434)
Q Consensus 155 ~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~-~~~~ 233 (434)
.+++.. .|.. ++.+++...........+.+.|.+++|+|+++.|+ ++..++.+.+||++.. .+..
T Consensus 155 ~l~~~~---~dg~---------v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~--~~~~dg~i~~~d~~~~~~~~~ 220 (337)
T 1gxr_A 155 VCFSCC---SDGN---------IAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLW--TGGLDNTVRSWDLREGRQLQQ 220 (337)
T ss_dssp EEEEEE---TTSC---------EEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEE--EEETTSEEEEEETTTTEEEEE
T ss_pred EEEEEe---CCCc---------EEEEeCCCCceeeeeecccCceEEEEECCCCCEEE--EEecCCcEEEEECCCCceEee
Confidence 876532 2222 34444444322222223578999999999999988 4667899999999744 3444
Q ss_pred e-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC-CceEEEECCCCCEEEEEEcCCceeeCCcEEE
Q 013871 234 L-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKI 311 (434)
Q Consensus 234 ~-~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-~~~~~~wspdg~~l~tas~~prl~~D~~i~i 311 (434)
+ +...+.+++|+|+|++|++++ .+|.|++||+.+++......+. .+..++|+|||++|++++. |+.|++
T Consensus 221 ~~~~~~v~~~~~s~~~~~l~~~~---~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------dg~i~~ 291 (337)
T 1gxr_A 221 HDFTSQIFSLGYCPTGEWLAVGM---ESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGK------DNLLNA 291 (337)
T ss_dssp EECSSCEEEEEECTTSSEEEEEE---TTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEET------TSEEEE
T ss_pred ecCCCceEEEEECCCCCEEEEEc---CCCcEEEEECCCCCeEEEcCCccceeEEEECCCCCEEEEecC------CCcEEE
Confidence 4 578899999999999999998 5579999999988765443332 5667999999999999999 999999
Q ss_pred EeecC-ceeeee-ecccceeeEEEcCCCCCCCC
Q 013871 312 FHHNG-SLFFKK-MFDKLFQAEWKPVSPDKFGD 342 (434)
Q Consensus 312 w~~~g-~~~~~~-~~~~~~~~~w~p~~~~~~~~ 342 (434)
|++.. +.+... +...+..+.|.|++..++..
T Consensus 292 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 324 (337)
T 1gxr_A 292 WRTPYGASIFQSKESSSVLSCDISVDDKYIVTG 324 (337)
T ss_dssp EETTTCCEEEEEECSSCEEEEEECTTSCEEEEE
T ss_pred EECCCCeEEEEecCCCcEEEEEECCCCCEEEEe
Confidence 99854 444333 45679999999998766654
No 23
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.97 E-value=2.3e-28 Score=232.61 Aligned_cols=276 Identities=16% Similarity=0.205 Sum_probs=201.1
Q ss_pred cceEEecCC-CcEEEEEecCCCCCCCcEEEEEcCCCc-----EEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEE
Q 013871 2 LLLLTCLRV-GLIIQTFQKSSTPQEKNVILWKTETGE-----AVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQF 74 (434)
Q Consensus 2 V~~l~fSP~-g~~L~t~~~~~~~~d~~v~iWd~~~g~-----~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v 74 (434)
|++|+|||+ +++|+|++ .|+.|+|||+.+++ ++..+.. |...+.++.|+||+++|+++ .++.|++
T Consensus 41 V~~v~~sp~~~~~l~S~s-----~D~~i~vWd~~~~~~~~~~~~~~l~~---h~~~V~~~~~s~dg~~l~s~~~d~~i~~ 112 (340)
T 4aow_A 41 VTQIATTPQFPDMILSAS-----RDKTIIMWKLTRDETNYGIPQRALRG---HSHFVSDVVISSDGQFALSGSWDGTLRL 112 (340)
T ss_dssp EEEEEECTTCTTEEEEEE-----TTSCEEEEEECCSSSCSEEEEEEECC---CSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred EEEEEEeCCCCCEEEEEc-----CCCeEEEEECCCCCcccceeeEEEeC---CCCCEEEEEECCCCCEEEEEcccccceE
Confidence 789999998 68999999 89999999997654 3445544 33677799999999999988 4679999
Q ss_pred EeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCC
Q 013871 75 FDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGST 154 (434)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~ 154 (434)
|+................+....++|++ ..++. .+.++.+++|++... .........+...+..+.|++++.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s-----~s~d~~~~~~d~~~~--~~~~~~~~~~~~~v~~~~~~~~~~ 184 (340)
T 4aow_A 113 WDLTTGTTTRRFVGHTKDVLSVAFSSDN-RQIVS-----GSRDKTIKLWNTLGV--CKYTVQDESHSEWVSCVRFSPNSS 184 (340)
T ss_dssp EETTTTEEEEEEECCSSCEEEEEECTTS-SCEEE-----EETTSCEEEECTTSC--EEEEECSSSCSSCEEEEEECSCSS
T ss_pred EeecccceeeeecCCCCceeEEEEeecC-cccee-----ecCCCeEEEEEeCCC--ceEEEEeccccCcccceEEccCCC
Confidence 9988754433334445567788888884 44443 245578999998652 223333445566777889998876
Q ss_pred eEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-ceeEE
Q 013871 155 GLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILE 233 (434)
Q Consensus 155 ~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~-~~~~~ 233 (434)
..++++ ...|...+ .++............+.++|.+++|+|+++.|+ +|..|+.|.+||++. ..+..
T Consensus 185 ~~~~~s-~~~d~~i~---------i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~--s~s~Dg~i~iwd~~~~~~~~~ 252 (340)
T 4aow_A 185 NPIIVS-CGWDKLVK---------VWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCA--SGGKDGQAMLWDLNEGKHLYT 252 (340)
T ss_dssp SCEEEE-EETTSCEE---------EEETTTTEEEEEECCCSSCEEEEEECTTSSEEE--EEETTCEEEEEETTTTEEEEE
T ss_pred CcEEEE-EcCCCEEE---------EEECCCCceeeEecCCCCcEEEEEECCCCCEEE--EEeCCCeEEEEEeccCceeee
Confidence 544433 22344433 333333322222234578999999999999988 578899999999974 44444
Q ss_pred e-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC---------C--CceEEEECCCCCEEEEEEcCC
Q 013871 234 L-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA---------E--CSVTSEWSPDGRYFMTATTAP 301 (434)
Q Consensus 234 ~-~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~---------~--~~~~~~wspdg~~l~tas~~p 301 (434)
+ +...++++.|+|++.+++.+ .++.|+|||++++..+..+.. | .++.++|+|||++|++++.
T Consensus 253 ~~~~~~v~~~~~~~~~~~~~~~----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~-- 326 (340)
T 4aow_A 253 LDGGDIINALCFSPNRYWLCAA----TGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYT-- 326 (340)
T ss_dssp EECSSCEEEEEECSSSSEEEEE----ETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEET--
T ss_pred ecCCceEEeeecCCCCceeecc----CCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeC--
Confidence 4 56789999999998776544 346999999998877766542 2 5667999999999999999
Q ss_pred ceeeCCcEEEEeec
Q 013871 302 RLQIDNGIKIFHHN 315 (434)
Q Consensus 302 rl~~D~~i~iw~~~ 315 (434)
|+.|+||++.
T Consensus 327 ----Dg~v~iW~~~ 336 (340)
T 4aow_A 327 ----DNLVRVWQVT 336 (340)
T ss_dssp ----TSCEEEEEEE
T ss_pred ----CCEEEEEeCC
Confidence 9999999984
No 24
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.5e-30 Score=252.42 Aligned_cols=284 Identities=13% Similarity=0.216 Sum_probs=203.5
Q ss_pred cceEEecCCCc-EEEEEecCC-----CCCCCcEEEEEcCCCc---EEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCe
Q 013871 2 LLLLTCLRVGL-IIQTFQKSS-----TPQEKNVILWKTETGE---AVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNE 71 (434)
Q Consensus 2 V~~l~fSP~g~-~L~t~~~~~-----~~~d~~v~iWd~~~g~---~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~ 71 (434)
|.+++|||+|+ +|++..... ...|+.|+|||+.+++ .+..+. +...+.+++|+||+++|+++. ++.
T Consensus 15 v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~~dg~ 90 (416)
T 2pm9_A 15 TATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQ----VDSKFNDLDWSHNNKIIAGALDNGS 90 (416)
T ss_dssp SCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCC----CSSCEEEEEECSSSSCEEEEESSSC
T ss_pred cceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEe----cCCceEEEEECCCCCeEEEEccCCe
Confidence 67899999998 888873211 0378999999999885 333332 236677999999999999884 679
Q ss_pred EEEEeCCCC----CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCC------CCCceeeeeecc
Q 013871 72 IQFFDTTDF----PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDL------QSQPLARRSFFR 141 (434)
Q Consensus 72 i~v~~~~~~----~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~------~~~~i~~~~~~~ 141 (434)
|++|++... ........+...|.+++|+|+++..++. .+.++.|++|++.... ....+.....+.
T Consensus 91 v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s-----~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 165 (416)
T 2pm9_A 91 LELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLAS-----GGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSV 165 (416)
T ss_dssp EEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEE-----ECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSS
T ss_pred EEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEE-----EcCCCeEEEEECCCCccccccccccccccccCCC
Confidence 999999762 1222233455679999999985555553 3556789999998731 001122234567
Q ss_pred cceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCC-------CCCeEEEEECcCCC-EEEEE
Q 013871 142 CSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK-------EGPVHDVQWSYSGS-EFAVV 213 (434)
Q Consensus 142 ~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~-------~~~i~~v~wspdg~-~~av~ 213 (434)
..+..+.|+|++..+++.++ .|.. +..+++... .....+.. ...|.+++|+|++. .++
T Consensus 166 ~~v~~~~~~~~~~~~l~~~~--~dg~---------v~iwd~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-- 231 (416)
T 2pm9_A 166 DEVISLAWNQSLAHVFASAG--SSNF---------ASIWDLKAK-KEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVA-- 231 (416)
T ss_dssp CCCCEEEECSSCTTEEEEES--SSSC---------EEEEETTTT-EEEEEECCCCCSSCCCCCEEEEEECSSCTTEEE--
T ss_pred CCeeEEEeCCCCCcEEEEEc--CCCC---------EEEEECCCC-CcceEEeccccccccCCceEEEEECCCCCCEEE--
Confidence 78889999999554444332 2333 333333332 22222221 67899999999985 555
Q ss_pred EccCCC---eEEEEeccc--ceeEE---eCCcCeeEEEECC-CCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--Cc
Q 013871 214 YGFMPA---SATIFNKKC--RPILE---LGSGPYNTVRWNP-KGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CS 282 (434)
Q Consensus 214 ~g~~~~---~v~l~d~~~--~~~~~---~~~~~~~~i~~SP-~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~ 282 (434)
++..++ .|++||++. ..+.. .|...+++++|+| ++++|++++ .+|.|++||+.+++.+..+..| .+
T Consensus 232 ~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~---~dg~v~~wd~~~~~~~~~~~~~~~~v 308 (416)
T 2pm9_A 232 TATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSG---RDNTVLLWNPESAEQLSQFPARGNWC 308 (416)
T ss_dssp EEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEE---SSSEEEEECSSSCCEEEEEECSSSCC
T ss_pred EEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEe---CCCCEEEeeCCCCccceeecCCCCce
Confidence 456677 999999974 23333 3678899999999 999999998 5679999999999999888776 56
Q ss_pred eEEEECCCC-CEEEEEEcCCceeeCCcEEEEeecCc
Q 013871 283 VTSEWSPDG-RYFMTATTAPRLQIDNGIKIFHHNGS 317 (434)
Q Consensus 283 ~~~~wspdg-~~l~tas~~prl~~D~~i~iw~~~g~ 317 (434)
..++|+|+| ++|++++. |+.|+||++...
T Consensus 309 ~~~~~s~~~~~~l~s~~~------d~~i~iw~~~~~ 338 (416)
T 2pm9_A 309 FKTKFAPEAPDLFACASF------DNKIEVQTLQNL 338 (416)
T ss_dssp CCEEECTTCTTEEEECCS------SSEEEEEESCCC
T ss_pred EEEEECCCCCCEEEEEec------CCcEEEEEccCC
Confidence 679999999 89999998 999999999543
No 25
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.97 E-value=4.3e-28 Score=239.15 Aligned_cols=280 Identities=14% Similarity=0.155 Sum_probs=209.3
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF 80 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~ 80 (434)
+.+|+||++ +.|+++. |++|+|||+.+|+++..+..+. +...|.+++|+|||++||++. |++|+||++...
T Consensus 108 ~~~l~wS~~-n~lAvgl------d~tV~lWd~~tg~~~~~~~~~~-~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~ 179 (420)
T 4gga_A 108 LNLVDWSSG-NVLAVAL------DNSVYLWSASSGDILQLLQMEQ-PGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ 179 (420)
T ss_dssp CBCEEECTT-SEEEEEE------TTEEEEEETTTCCEEEEEECCS-TTCCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred ceeEEECCC-CEEEEEe------CCEEEEEECCCCCEEEEEEecC-CCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCC
Confidence 357999985 5777654 7899999999999888776543 346678999999999999985 679999999876
Q ss_pred CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEE
Q 013871 81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVA 160 (434)
Q Consensus 81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~ 160 (434)
........|...+.++++++ ..++. ++.++.+.+|+.... ...+.....+...++.+.|+++|..++...
T Consensus 180 ~~~~~~~~h~~~v~~~s~~~---~~l~s-----gs~d~~i~~~d~~~~--~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~ 249 (420)
T 4gga_A 180 KRLRNMTSHSARVGSLSWNS---YILSS-----GSRSGHIHHHDVRVA--EHHVATLSGHSQEVCGLRWAPDGRHLASGG 249 (420)
T ss_dssp EEEEEECCCSSCEEEEEEET---TEEEE-----EETTSEEEEEETTSS--SCEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred cEEEEEeCCCCceEEEeeCC---CEEEE-----EeCCCceeEeeeccc--ceeeEEecccccceeeeeecCCCCeeeeee
Confidence 54444445556677777654 34443 345678999998763 556677788889999999999999865432
Q ss_pred EecccccCceeecceeEEEEeeCCcc--eeeeecCCCCCeEEEEECcCCCEE-EEEEccCCCeEEEEecccc-eeEEe-C
Q 013871 161 QSDVDKTNQSYYGESKLNYLTTDGTH--EGLVPLRKEGPVHDVQWSYSGSEF-AVVYGFMPASATIFNKKCR-PILEL-G 235 (434)
Q Consensus 161 ~~~~d~~~~~~~g~~~l~~l~~~~~~--~~~v~l~~~~~i~~v~wspdg~~~-av~~g~~~~~v~l~d~~~~-~~~~~-~ 235 (434)
.|.... ++.+...... .......+.+.|..++|+|++..+ ++..|..|+.|++||+... .+..+ +
T Consensus 250 ---~D~~v~-------i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~ 319 (420)
T 4gga_A 250 ---NDNLVN-------VWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDA 319 (420)
T ss_dssp ---TTSCEE-------EEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEEC
T ss_pred ---ccccce-------EEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeecc
Confidence 343333 2222111110 111223357899999999977654 5556778999999999754 34444 5
Q ss_pred CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEe
Q 013871 236 SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFH 313 (434)
Q Consensus 236 ~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~ 313 (434)
...+.++.|+|+++.+++++.. .+|.|+|||+.+++++..+.+| .+..++|||||++|+||+. |++|+||+
T Consensus 320 ~~~v~~~~~~~~~~~lv~~sg~-~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~------D~tvriWd 392 (420)
T 4gga_A 320 HSQVCSILWSPHYKELISGHGF-AQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAA------DETLRLWR 392 (420)
T ss_dssp SSCEEEEEEETTTTEEEEEECT-TTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEET------TTEEEEEC
T ss_pred ccceeeeeecCCCCeEEEEEec-CCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEec------CCeEEEEE
Confidence 6788999999999998877522 4689999999999999999887 5677999999999999999 99999999
Q ss_pred ecC
Q 013871 314 HNG 316 (434)
Q Consensus 314 ~~g 316 (434)
+..
T Consensus 393 v~~ 395 (420)
T 4gga_A 393 CFE 395 (420)
T ss_dssp CSC
T ss_pred CCC
Confidence 754
No 26
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.97 E-value=1.3e-28 Score=236.13 Aligned_cols=272 Identities=12% Similarity=0.149 Sum_probs=196.5
Q ss_pred cceEEe-----cC-CCcEEEEEecCCCCCCCcEEEEEcCCC-------cEEEEEeecCcCCCCCCeeeecCCCcEEEEec
Q 013871 2 LLLLTC-----LR-VGLIIQTFQKSSTPQEKNVILWKTETG-------EAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA 68 (434)
Q Consensus 2 V~~l~f-----SP-~g~~L~t~~~~~~~~d~~v~iWd~~~g-------~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~ 68 (434)
|++|+| +| +|++|+|++ .|++|+|||+.++ ..+..+..+ ...+.+++|+||+.++++++
T Consensus 24 V~~~~~~~s~~~~~d~~~l~sgs-----~D~~v~iWd~~~~~~~~~~~~~~~~l~~h---~~~V~~~~~~~~~~~l~s~s 95 (343)
T 2xzm_R 24 VTSIVAGFSQKENEDSPVLISGS-----RDKTVMIWKLYEEEQNGYFGIPHKALTGH---NHFVSDLALSQENCFAISSS 95 (343)
T ss_dssp EEEEEECCCSSTTCCCCEEEEEE-----TTSCEEEEEECSSCCSSBSEEEEEEECCC---SSCEEEEEECSSTTEEEEEE
T ss_pred hhheeeEEEeecCCCCCEEEEEc-----CCCEEEEEECCcCCcccccccccchhccC---CCceEEEEECCCCCEEEEEc
Confidence 788999 77 999999999 8999999999754 344555443 36677999999999999885
Q ss_pred -CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceee--eeeccccee
Q 013871 69 -TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLAR--RSFFRCSTV 145 (434)
Q Consensus 69 -~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~--~~~~~~~~~ 145 (434)
|++|++||+...........|...|.+++|+|+ +..++. .+.++.|++|++.. ...... ...+...+.
T Consensus 96 ~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~-~~~l~s-----~~~d~~i~~wd~~~---~~~~~~~~~~~~~~~v~ 166 (343)
T 2xzm_R 96 WDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPD-NRQILS-----AGAEREIKLWNILG---ECKFSSAEKENHSDWVS 166 (343)
T ss_dssp TTSEEEEEETTSSCEEEEEECCCSCEEEEEECSS-TTEEEE-----EETTSCEEEEESSS---CEEEECCTTTSCSSCEE
T ss_pred CCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCC-CCEEEE-----EcCCCEEEEEeccC---CceeeeecccCCCceee
Confidence 689999999876544444556778999999998 455543 24568999999864 221111 114556678
Q ss_pred EEEECCCC----------CeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEc
Q 013871 146 QLNWNRGS----------TGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYG 215 (434)
Q Consensus 146 ~~~ws~~G----------~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g 215 (434)
.+.|+|++ ..++. ...|...+.| +.... .......+.++|.+++|+|+|++|+ +|
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~l~s---~~~d~~i~iw---------d~~~~-~~~~~~~h~~~v~~~~~s~~g~~l~--sg 231 (343)
T 2xzm_R 167 CVRYSPIMKSANKVQPFAPYFAS---VGWDGRLKVW---------NTNFQ-IRYTFKAHESNVNHLSISPNGKYIA--TG 231 (343)
T ss_dssp EEEECCCCCSCSCCCSSCCEEEE---EETTSEEEEE---------ETTTE-EEEEEECCSSCEEEEEECTTSSEEE--EE
T ss_pred eeeeccccccccccCCCCCEEEE---EcCCCEEEEE---------cCCCc-eeEEEcCccccceEEEECCCCCEEE--EE
Confidence 99999987 33322 2244444333 22221 1111223578999999999999988 57
Q ss_pred cCCCeEEEEecc--cceeEEe-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEE--Eee-----------C
Q 013871 216 FMPASATIFNKK--CRPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLG--TTR-----------A 279 (434)
Q Consensus 216 ~~~~~v~l~d~~--~~~~~~~-~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~--~~~-----------~ 279 (434)
..|+.|++||+. ......+ +...+++++|+|++++++++. ++.|++||+.+++.+. .+. +
T Consensus 232 s~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~~la~~~----d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (343)
T 2xzm_R 232 GKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVGT----DQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKG 307 (343)
T ss_dssp ETTCEEEEEESSCCSSCSEEEECSSCEEEEEECSSSCEEEEEE----SSCEEEEESSSCCSCSEEECCCCSGGGBTTBCC
T ss_pred cCCCeEEEEECCCCcccceeecCCCcEEEEEECCCCCEEEEEC----CCCEEEEEeCCCCCCceEEeecCcchhhhhhcC
Confidence 889999999983 2233344 566799999999999887553 3479999998764322 332 2
Q ss_pred C--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec
Q 013871 280 E--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN 315 (434)
Q Consensus 280 ~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~ 315 (434)
| .+..++|+|+|++|++|+. |+.|+||++.
T Consensus 308 ~~~~v~~~~~sp~g~~l~sg~~------Dg~v~~w~~~ 339 (343)
T 2xzm_R 308 KNPQCTSLAWNALGKKLFAGFT------DGVIRTFSFE 339 (343)
T ss_dssp SCCCEEEEEECSSSCCEEEEET------TSEEEEEEEE
T ss_pred CCCceEEEEECCCCCeEEEecC------CceEEEEEEE
Confidence 2 4567999999999999999 9999999984
No 27
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.97 E-value=4.8e-28 Score=231.13 Aligned_cols=278 Identities=13% Similarity=0.146 Sum_probs=192.1
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCc--EEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCC
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGE--AVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTT 78 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~--~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~ 78 (434)
|++++|||+ +|+|++ .|+.|+|||+.++. .+..+.. ..|...+.+++|+||+++|++++ |++|++|+..
T Consensus 17 v~~~~~s~~--~las~~-----~D~~i~lw~~~~~~~~~~~~~~~-~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~ 88 (330)
T 2hes_X 17 IWSFDFSQG--ILATGS-----TDRKIKLVSVKYDDFTLIDVLDE-TAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKE 88 (330)
T ss_dssp EEEEEEETT--EEEEEE-----SSSCEEEEECSSSCCEEEEEECT-TCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-
T ss_pred eeeeccCCC--EEEEEc-----CCCEEEEEEecCCCeEEEEEEec-CCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcc
Confidence 789999998 999999 89999999998763 3444421 11446777999999999999985 6899999985
Q ss_pred CCC-------CceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCC-CCCceeeeeecccceeEEEEC
Q 013871 79 DFP-------KGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDL-QSQPLARRSFFRCSTVQLNWN 150 (434)
Q Consensus 79 ~~~-------~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~-~~~~i~~~~~~~~~~~~~~ws 150 (434)
... .......|...|.+++|+|+ +.+++. .+.++.|++|++.... ....+.....|...+..+.|+
T Consensus 89 ~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~-g~~las-----~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~ 162 (330)
T 2hes_X 89 ESADRTFEMDLLAIIEGHENEVKGVAWSND-GYYLAT-----CSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWH 162 (330)
T ss_dssp ------CCCEEEEEEC----CEEEEEECTT-SCEEEE-----EETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEEC
T ss_pred cCcCccccceeEEEEcCCCCcEEEEEECCC-CCEEEE-----EeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEEC
Confidence 321 11123345667999999998 555553 3456799999995321 123455666788889999999
Q ss_pred CCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeec-CCCCCeEEEEECcC--CCEEEEEEccCCCeEEEEecc
Q 013871 151 RGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL-RKEGPVHDVQWSYS--GSEFAVVYGFMPASATIFNKK 227 (434)
Q Consensus 151 ~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l-~~~~~i~~v~wspd--g~~~av~~g~~~~~v~l~d~~ 227 (434)
|+|..|+. ...|.+.+.|. +.. +...+...+ .+.+.|.+++|+|+ +..|+ ++..|+.|++||++
T Consensus 163 p~~~~l~s---~s~D~~i~iW~-------~~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~--s~s~D~~v~iw~~~ 229 (330)
T 2hes_X 163 PSEALLAS---SSYDDTVRIWK-------DYD-DDWECVAVLNGHEGTVWSSDFDKTEGVFRLC--SGSDDSTVRVWKYM 229 (330)
T ss_dssp SSSSEEEE---EETTSCEEEEE-------EET-TEEEEEEEECCCSSCEEEEEECCSSSSCEEE--EEETTSCEEEEEEE
T ss_pred CCCCEEEE---EcCCCeEEEEE-------CCC-CCeeEEEEccCCCCcEEEEEecCCCCeeEEE--EEeCCCeEEEEEec
Confidence 99997543 33566655442 211 111222222 35789999999999 55555 68889999999985
Q ss_pred cc---------eeEEe---CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCE--EEEEe-eCC---CceEEEECC
Q 013871 228 CR---------PILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK--QLGTT-RAE---CSVTSEWSP 289 (434)
Q Consensus 228 ~~---------~~~~~---~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~--~i~~~-~~~---~~~~~~wsp 289 (434)
.. ....+ |...+.+++|+|++ +|++++ .+|.|+|||..+++ .+... .+| .+..++|+|
T Consensus 230 ~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~---~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~ 305 (330)
T 2hes_X 230 GDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVG---ADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLE 305 (330)
T ss_dssp EECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEE---TTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-
T ss_pred CCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEe---CCCEEEEEEcCCCceEEEeccccccccceEEEEEEec
Confidence 42 22222 67889999999766 788888 56799999998874 33332 334 456699999
Q ss_pred --CCCEEEEEEcCCceeeCCcEEEEeecC
Q 013871 290 --DGRYFMTATTAPRLQIDNGIKIFHHNG 316 (434)
Q Consensus 290 --dg~~l~tas~~prl~~D~~i~iw~~~g 316 (434)
||++|++++. |+.|+||++..
T Consensus 306 ~~~~~~las~s~------Dg~v~~W~~~~ 328 (330)
T 2hes_X 306 LNGKTILATGGD------DGIVNFWSLEK 328 (330)
T ss_dssp ----CCEEEEET------TSEEEEEEC--
T ss_pred CCCceEEEEecC------CCcEEEEEecc
Confidence 7999999999 99999999754
No 28
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.3e-29 Score=246.62 Aligned_cols=279 Identities=12% Similarity=0.163 Sum_probs=205.2
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCC----CcEEEEEeecCcCCCCCCeeeecCC-CcEEEEec-CCeEEEE
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTET----GEAVYQLFQKNMTKTTWPSIRFSSD-EAVACRMA-TNEIQFF 75 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~----g~~~~~~~~~~~~~~~~~~~~~S~d-~~~la~~~-~~~i~v~ 75 (434)
|.+++|||+|++|++++ .|+.|+|||+.+ .+.+..+..+ ...+.+++|+|| +.+|+++. ++.|++|
T Consensus 70 v~~~~~s~~~~~l~~~~-----~dg~v~vw~~~~~~~~~~~~~~~~~h---~~~v~~~~~~~~~~~~l~s~~~dg~v~iw 141 (416)
T 2pm9_A 70 FNDLDWSHNNKIIAGAL-----DNGSLELYSTNEANNAINSMARFSNH---SSSVKTVKFNAKQDNVLASGGNNGEIFIW 141 (416)
T ss_dssp EEEEEECSSSSCEEEEE-----SSSCEEEECCSSTTSCCCEEEECCCS---SSCCCEEEECSSSTTBEEEECSSSCEEBC
T ss_pred eEEEEECCCCCeEEEEc-----cCCeEEEeecccccccccchhhccCC---ccceEEEEEcCCCCCEEEEEcCCCeEEEE
Confidence 68999999999999998 789999999987 3466666554 367779999998 88888885 6799999
Q ss_pred eCCCCC------Ccee---eeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeec------
Q 013871 76 DTTDFP------KGIL---YRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFF------ 140 (434)
Q Consensus 76 ~~~~~~------~~~~---~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~------ 140 (434)
|+.... .... ...+...|.+++|+|+++..+++ .+.++.|++|++.. .+.+.....+
T Consensus 142 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~-----~~~dg~v~iwd~~~---~~~~~~~~~~~~~~~~ 213 (416)
T 2pm9_A 142 DMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFAS-----AGSSNFASIWDLKA---KKEVIHLSYTSPNSGI 213 (416)
T ss_dssp BTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEE-----ESSSSCEEEEETTT---TEEEEEECCCCCSSCC
T ss_pred ECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEE-----EcCCCCEEEEECCC---CCcceEEecccccccc
Confidence 997754 2111 12345679999999986566654 24567899999987 6677766665
Q ss_pred ccceeEEEECCCCCeEEEEEEecc-cccCceeecceeEEEEeeCCcceeeeec--CCCCCeEEEEECc-CCCEEEEEEcc
Q 013871 141 RCSTVQLNWNRGSTGLLAVAQSDV-DKTNQSYYGESKLNYLTTDGTHEGLVPL--RKEGPVHDVQWSY-SGSEFAVVYGF 216 (434)
Q Consensus 141 ~~~~~~~~ws~~G~~l~~~~~~~~-d~~~~~~~g~~~l~~l~~~~~~~~~v~l--~~~~~i~~v~wsp-dg~~~av~~g~ 216 (434)
...+..+.|+|+|..+++.++.+. +...+ +| ++.........+ .+...|.+++|+| +++.|+ ++.
T Consensus 214 ~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~-------~~--d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~--s~~ 282 (416)
T 2pm9_A 214 KQQLSVVEWHPKNSTRVATATGSDNDPSIL-------IW--DLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLL--SSG 282 (416)
T ss_dssp CCCEEEEEECSSCTTEEEEEECCSSSCCCC-------EE--ETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEE--EEE
T ss_pred CCceEEEEECCCCCCEEEEEECCCCCceEE-------EE--eCCCCCCCcEEeecCccCceeEEEeCCCCCCeEE--EEe
Confidence 677899999999865555443221 00332 33 333321222223 3578999999999 888888 577
Q ss_pred CCCeEEEEeccc-ceeEEe--CCcCeeEEEECCCC-CeEEEEecCCCCCeEEEEEccCCEEEEEe---------------
Q 013871 217 MPASATIFNKKC-RPILEL--GSGPYNTVRWNPKG-KFLCLAGFGNLPGDMAFWDYVDGKQLGTT--------------- 277 (434)
Q Consensus 217 ~~~~v~l~d~~~-~~~~~~--~~~~~~~i~~SP~g-~~l~~~~~~~~~g~i~iwd~~~~~~i~~~--------------- 277 (434)
.++.|.+||++. ..+..+ |...+++++|+|+| ++|++++ .+|.|+|||+.+.+.....
T Consensus 283 ~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~---~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (416)
T 2pm9_A 283 RDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACAS---FDNKIEVQTLQNLTNTLDEQETETKQQESETDFW 359 (416)
T ss_dssp SSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECC---SSSEEEEEESCCCCCSSCC---------------
T ss_pred CCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEe---cCCcEEEEEccCCCCCcccccccccccCCccccc
Confidence 799999999864 445544 68899999999999 7888888 5579999999865421111
Q ss_pred ----------------------eCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecC
Q 013871 278 ----------------------RAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG 316 (434)
Q Consensus 278 ----------------------~~~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g 316 (434)
....+..++|||||++|++++. |+.|+||++..
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~------d~~v~~w~~~~ 414 (416)
T 2pm9_A 360 NNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPD------GKGVSITNPKI 414 (416)
T ss_dssp -------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTT------SSCBCCBCCCC
T ss_pred ccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCC------CCeEEEEEecc
Confidence 0113336899999999999998 99999999864
No 29
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.97 E-value=3.2e-27 Score=222.54 Aligned_cols=278 Identities=14% Similarity=0.152 Sum_probs=204.7
Q ss_pred ceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCC
Q 013871 3 LLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFP 81 (434)
Q Consensus 3 ~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~ 81 (434)
.+|+|||++ +|+++. |++|+|||+.+|++++.+..+. |...+.+++|+|++++|++++ |++|++|++....
T Consensus 29 ~~l~WS~~~-~lAvg~------D~tV~iWd~~tg~~~~~~~~~~-~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~ 100 (318)
T 4ggc_A 29 NLVDWSSGN-VLAVAL------DNSVYLWSASSGDILQLLQMEQ-PGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK 100 (318)
T ss_dssp BCEEECTTS-EEEEEE------TTEEEEEETTTCCEEEEEECCS-TTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred eEEEECCCC-EEEEEe------CCEEEEEECCCCCEEEEEEecC-CCCeEEEEEECCCCCEEEEEECCCcEEEeecCCce
Confidence 579999986 676644 8999999999999988876543 446677999999999999985 6799999998765
Q ss_pred CceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEE
Q 013871 82 KGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQ 161 (434)
Q Consensus 82 ~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~ 161 (434)
.......+...+..+.+.+ ..++. .+..+.+.+|..... ...+.....+......+.|+++|+.++..
T Consensus 101 ~~~~~~~h~~~~~~~~~~~---~~l~s-----~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~s~-- 168 (318)
T 4ggc_A 101 RLRNMTSHSARVGSLSWNS---YILSS-----GSRSGHIHHHDVRVA--EHHVATLSGHSQEVCGLRWAPDGRHLASG-- 168 (318)
T ss_dssp EEEEEECCSSCEEEEEEET---TEEEE-----EETTSEEEEEETTSS--SCEEEEEECCSSCEEEEEECTTSSEEEEE--
T ss_pred eEEEecCccceEEEeecCC---CEEEE-----EecCCceEeeecCCC--ceeEEEEcCccCceEEEEEcCCCCEEEEE--
Confidence 4333344444555544443 34443 244567888888763 45666777788888999999999986542
Q ss_pred ecccccCceeecceeEEEEeeCCcc--eeeeecCCCCCeEEEEECcCCCEE-EEEEccCCCeEEEEecccceeEE--eCC
Q 013871 162 SDVDKTNQSYYGESKLNYLTTDGTH--EGLVPLRKEGPVHDVQWSYSGSEF-AVVYGFMPASATIFNKKCRPILE--LGS 236 (434)
Q Consensus 162 ~~~d~~~~~~~g~~~l~~l~~~~~~--~~~v~l~~~~~i~~v~wspdg~~~-av~~g~~~~~v~l~d~~~~~~~~--~~~ 236 (434)
..|.+.+. |.+...... .........+.|..++|+|++..+ .+.++..++.|++||.+...... .+.
T Consensus 169 -~~d~~i~i-------wd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~ 240 (318)
T 4ggc_A 169 -GNDNLVNV-------WPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH 240 (318)
T ss_dssp -ETTSCEEE-------EESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECS
T ss_pred -ecCcceeE-------EECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccce
Confidence 24444443 322211110 111222346889999999987655 44567788899999997544332 367
Q ss_pred cCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEee
Q 013871 237 GPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH 314 (434)
Q Consensus 237 ~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~ 314 (434)
..+..+.|+|+++.+++++.. .+|.|+|||+.+++++..+.+| .+..++|+|||++|++++. |+.|+|||+
T Consensus 241 ~~v~~~~~~~~~~~~~~~sg~-~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~------D~~v~iWd~ 313 (318)
T 4ggc_A 241 SQVCSILWSPHYKELISGHGF-AQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAA------DETLRLWRC 313 (318)
T ss_dssp SCEEEEEEETTTTEEEEEECT-TTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEET------TTEEEEECC
T ss_pred eeeeeeeecccccceEEEEEc-CCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEec------CCeEEEEEC
Confidence 889999999999998876532 5689999999999999999887 5667999999999999999 999999997
Q ss_pred c
Q 013871 315 N 315 (434)
Q Consensus 315 ~ 315 (434)
.
T Consensus 314 ~ 314 (318)
T 4ggc_A 314 F 314 (318)
T ss_dssp S
T ss_pred C
Confidence 4
No 30
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.97 E-value=3.9e-28 Score=235.94 Aligned_cols=275 Identities=11% Similarity=0.123 Sum_probs=196.8
Q ss_pred cceEEecCCC-cEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecC-CCcEEEEe-cCCeEEEEeCC
Q 013871 2 LLLLTCLRVG-LIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSS-DEAVACRM-ATNEIQFFDTT 78 (434)
Q Consensus 2 V~~l~fSP~g-~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~-d~~~la~~-~~~~i~v~~~~ 78 (434)
|++++|||+| ++|++++ .|+.|+|||+.+++....+.... +...+.+++|+| ++.+|+++ .++.|++||+.
T Consensus 76 v~~~~~~~~~~~~l~s~~-----~dg~i~iwd~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~ 149 (383)
T 3ei3_B 76 VTSLEWHPTHPTTVAVGS-----KGGDIILWDYDVQNKTSFIQGMG-PGDAITGMKFNQFNTNQLFVSSIRGATTLRDFS 149 (383)
T ss_dssp EEEEEECSSCTTEEEEEE-----BTSCEEEEETTSTTCEEEECCCS-TTCBEEEEEEETTEEEEEEEEETTTEEEEEETT
T ss_pred EEEEEECCCCCCEEEEEc-----CCCeEEEEeCCCcccceeeecCC-cCCceeEEEeCCCCCCEEEEEeCCCEEEEEECC
Confidence 7899999999 9999999 89999999999988777665322 346777999999 67888887 46899999998
Q ss_pred CCCCceeeeee---cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCe
Q 013871 79 DFPKGILYRLR---VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTG 155 (434)
Q Consensus 79 ~~~~~~~~~~~---~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~ 155 (434)
... ......+ ...|.+++|+|+ +..+++ .+.++.|++|++. +..+.....+...+..+.|+|+|..
T Consensus 150 ~~~-~~~~~~~~~~~~~v~~~~~~~~-~~~l~~-----~~~d~~i~i~d~~----~~~~~~~~~h~~~v~~~~~~~~~~~ 218 (383)
T 3ei3_B 150 GSV-IQVFAKTDSWDYWYCCVDVSVS-RQMLAT-----GDSTGRLLLLGLD----GHEIFKEKLHKAKVTHAEFNPRCDW 218 (383)
T ss_dssp SCE-EEEEECCCCSSCCEEEEEEETT-TTEEEE-----EETTSEEEEEETT----SCEEEEEECSSSCEEEEEECSSCTT
T ss_pred CCc-eEEEeccCCCCCCeEEEEECCC-CCEEEE-----ECCCCCEEEEECC----CCEEEEeccCCCcEEEEEECCCCCC
Confidence 522 1222212 245999999998 455554 2456799999993 5778888888899999999999995
Q ss_pred EEEEEEecccccCceeecceeEEEEeeCCc-ceeeeecCCCCCeEEEEECc-CCCEEEEEEccCCCeEEEEecccc-eeE
Q 013871 156 LLAVAQSDVDKTNQSYYGESKLNYLTTDGT-HEGLVPLRKEGPVHDVQWSY-SGSEFAVVYGFMPASATIFNKKCR-PIL 232 (434)
Q Consensus 156 l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~-~~~~v~l~~~~~i~~v~wsp-dg~~~av~~g~~~~~v~l~d~~~~-~~~ 232 (434)
+++.++ .|...+ +|.+..... ......+.+.+.|.+++|+| +++.|+ ++..++.|.+||++.. .+.
T Consensus 219 ~l~s~~--~d~~i~-------iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~--~~~~d~~i~iwd~~~~~~~~ 287 (383)
T 3ei3_B 219 LMATSS--VDATVK-------LWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLL--TTDQRNEIRVYSSYDWSKPD 287 (383)
T ss_dssp EEEEEE--TTSEEE-------EEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEE--EEESSSEEEEEETTBTTSCS
T ss_pred EEEEEe--CCCEEE-------EEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEE--EEcCCCcEEEEECCCCcccc
Confidence 444332 333333 333322111 12233345688999999999 999988 5777899999998632 212
Q ss_pred Ee--C-------C----------cCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC---Cce-EEEECC
Q 013871 233 EL--G-------S----------GPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE---CSV-TSEWSP 289 (434)
Q Consensus 233 ~~--~-------~----------~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~---~~~-~~~wsp 289 (434)
.+ + . +.+..+.|+|+|++ +++ .+|.|+|||+.+++.+..+..+ .+. .++|+|
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s---~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~ 362 (383)
T 3ei3_B 288 QIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLN---DKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSP 362 (383)
T ss_dssp EEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTT---CCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECT
T ss_pred ccccccccccccccceEEeccCCCCceEEEecCCccc--ccC---CCCeEEEEecCCCceeeeecCCCCCceEEEEEEec
Confidence 11 1 1 22333555555555 333 5689999999999998888753 333 469999
Q ss_pred CCCEEEEEEcCCceeeCCcEEEEeecC
Q 013871 290 DGRYFMTATTAPRLQIDNGIKIFHHNG 316 (434)
Q Consensus 290 dg~~l~tas~~prl~~D~~i~iw~~~g 316 (434)
||++|+++ . |+.|+||+++.
T Consensus 363 ~g~~l~s~-s------d~~i~iw~~~~ 382 (383)
T 3ei3_B 363 TGDVLASG-M------GFNILIWNRED 382 (383)
T ss_dssp TSSEEEEE-E------TTEEEEEECC-
T ss_pred CccEEEEe-c------CCcEEEEecCC
Confidence 99999998 4 89999999864
No 31
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=99.97 E-value=7.1e-28 Score=229.17 Aligned_cols=263 Identities=12% Similarity=0.182 Sum_probs=199.3
Q ss_pred CCCCCCeeeecCC----CcEEEEec-CCeEEEEeCCCCCCce--eeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceE
Q 013871 48 TKTTWPSIRFSSD----EAVACRMA-TNEIQFFDTTDFPKGI--LYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASV 120 (434)
Q Consensus 48 ~~~~~~~~~~S~d----~~~la~~~-~~~i~v~~~~~~~~~~--~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v 120 (434)
|...+.+++|+++ +.+|++++ |++|+||+........ ....|...|.++.|+|+ ...++. .+.++.|
T Consensus 31 H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~-~~~l~s-----~s~D~~i 104 (321)
T 3ow8_A 31 HDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHT-LPIAAS-----SSLDAHI 104 (321)
T ss_dssp SSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSS-SSEEEE-----EETTSEE
T ss_pred CCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCC-CCEEEE-----EeCCCcE
Confidence 4577779999985 56888884 7899999986543211 23345668999999998 455553 3567899
Q ss_pred EEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEE
Q 013871 121 QIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHD 200 (434)
Q Consensus 121 ~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~ 200 (434)
++|++.+ ++.+.....+......+.|+|+|+.|+... .|.. +..+++...........+...|.+
T Consensus 105 ~lWd~~~---~~~~~~~~~~~~~~~~~~~spdg~~l~~g~---~dg~---------v~i~~~~~~~~~~~~~~~~~~v~~ 169 (321)
T 3ow8_A 105 RLWDLEN---GKQIKSIDAGPVDAWTLAFSPDSQYLATGT---HVGK---------VNIFGVESGKKEYSLDTRGKFILS 169 (321)
T ss_dssp EEEETTT---TEEEEEEECCTTCCCCEEECTTSSEEEEEC---TTSE---------EEEEETTTCSEEEEEECSSSCEEE
T ss_pred EEEECCC---CCEEEEEeCCCccEEEEEECCCCCEEEEEc---CCCc---------EEEEEcCCCceeEEecCCCceEEE
Confidence 9999988 777777777777888999999999876531 2222 333333333222211223568999
Q ss_pred EEECcCCCEEEEEEccCCCeEEEEeccc-ceeEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEe
Q 013871 201 VQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTT 277 (434)
Q Consensus 201 v~wspdg~~~av~~g~~~~~v~l~d~~~-~~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~ 277 (434)
++|+|+|+.|+ +|..++.|++||++. ..+..+ |..++++++|+|+|++|++++ .+|.|+|||+++++.+..+
T Consensus 170 ~~~spdg~~la--sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s---~dg~i~iwd~~~~~~~~~~ 244 (321)
T 3ow8_A 170 IAYSPDGKYLA--SGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTAS---DDGYIKIYDVQHANLAGTL 244 (321)
T ss_dssp EEECTTSSEEE--EEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEEC---TTSCEEEEETTTCCEEEEE
T ss_pred EEECCCCCEEE--EEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEc---CCCeEEEEECCCcceeEEE
Confidence 99999999998 578899999999964 444555 678899999999999999998 5679999999999988888
Q ss_pred eCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec-Cceeeee--ecccceeeEEEcCCCCCCCC
Q 013871 278 RAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLFFKK--MFDKLFQAEWKPVSPDKFGD 342 (434)
Q Consensus 278 ~~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~-g~~~~~~--~~~~~~~~~w~p~~~~~~~~ 342 (434)
.+| .+..++|+|||++|++++. |+.|+|||+. ++++... +...++.++|.|++..+++.
T Consensus 245 ~~h~~~v~~~~~sp~~~~l~s~s~------D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~ 308 (321)
T 3ow8_A 245 SGHASWVLNVAFCPDDTHFVSSSS------DKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSV 308 (321)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEET------TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred cCCCCceEEEEECCCCCEEEEEeC------CCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEE
Confidence 877 4667999999999999999 9999999995 5555443 55689999999998877765
No 32
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.97 E-value=9.3e-28 Score=251.91 Aligned_cols=275 Identities=16% Similarity=0.205 Sum_probs=201.8
Q ss_pred CcceEEecCCC-cEEEEEecCCCCCCCcEEEEEcCCC-----cEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEE
Q 013871 1 MLLLLTCLRVG-LIIQTFQKSSTPQEKNVILWKTETG-----EAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQ 73 (434)
Q Consensus 1 ~V~~l~fSP~g-~~L~t~~~~~~~~d~~v~iWd~~~g-----~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~ 73 (434)
.|++|+|+|++ ++|+|++ .|+.|+|||+.++ ...+.+..+. ..+.+++|+||+++|++++ |++|+
T Consensus 384 ~V~~v~~~~~~~~~l~s~s-----~D~~i~~W~~~~~~~~~~~~~~~~~~h~---~~v~~v~~s~~g~~l~sgs~Dg~v~ 455 (694)
T 3dm0_A 384 MVTAIATPIDNADIIVSAS-----RDKSIILWKLTKDDKAYGVAQRRLTGHS---HFVEDVVLSSDGQFALSGSWDGELR 455 (694)
T ss_dssp CEEEEECCTTCCSEEEEEE-----TTSEEEEEECCCSTTCSCEEEEEEECCS---SCEEEEEECTTSSEEEEEETTSEEE
T ss_pred eeEEEEecCCCCCEEEEEe-----CCCcEEEEEccCCCcccccccceecCCC---CcEEEEEECCCCCEEEEEeCCCcEE
Confidence 37899999975 7999999 8999999999753 3445555543 6777999999999999985 68999
Q ss_pred EEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceee---eeecccceeEEEEC
Q 013871 74 FFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLAR---RSFFRCSTVQLNWN 150 (434)
Q Consensus 74 v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~---~~~~~~~~~~~~ws 150 (434)
|||+...........|...|.+++|+|++ ..++. .+.++.|++|++.. ...... ...|...+.++.|+
T Consensus 456 vwd~~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s-----~s~D~~i~iwd~~~---~~~~~~~~~~~~h~~~v~~~~~~ 526 (694)
T 3dm0_A 456 LWDLAAGVSTRRFVGHTKDVLSVAFSLDN-RQIVS-----ASRDRTIKLWNTLG---ECKYTISEGGEGHRDWVSCVRFS 526 (694)
T ss_dssp EEETTTTEEEEEEECCSSCEEEEEECTTS-SCEEE-----EETTSCEEEECTTS---CEEEEECSSTTSCSSCEEEEEEC
T ss_pred EEECCCCcceeEEeCCCCCEEEEEEeCCC-CEEEE-----EeCCCEEEEEECCC---CcceeeccCCCCCCCcEEEEEEe
Confidence 99998755434445567789999999995 44442 35567999999754 221111 12356668899999
Q ss_pred CCCCe-EEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-c
Q 013871 151 RGSTG-LLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-C 228 (434)
Q Consensus 151 ~~G~~-l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~-~ 228 (434)
|++.. +++. ...|.+.+.| ++...........+.+.|.+++|+|+|+.|+ +|+.|+.|++||++ +
T Consensus 527 ~~~~~~~l~s--~s~d~~v~vw---------d~~~~~~~~~~~~h~~~v~~v~~spdg~~l~--sg~~Dg~i~iwd~~~~ 593 (694)
T 3dm0_A 527 PNTLQPTIVS--ASWDKTVKVW---------NLSNCKLRSTLAGHTGYVSTVAVSPDGSLCA--SGGKDGVVLLWDLAEG 593 (694)
T ss_dssp SCSSSCEEEE--EETTSCEEEE---------ETTTCCEEEEECCCSSCEEEEEECTTSSEEE--EEETTSBCEEEETTTT
T ss_pred CCCCcceEEE--EeCCCeEEEE---------ECCCCcEEEEEcCCCCCEEEEEEeCCCCEEE--EEeCCCeEEEEECCCC
Confidence 98843 3222 2244444433 3333222222233578999999999999988 67889999999996 4
Q ss_pred ceeEEe-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC---------------------CceEEE
Q 013871 229 RPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE---------------------CSVTSE 286 (434)
Q Consensus 229 ~~~~~~-~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~---------------------~~~~~~ 286 (434)
..+..+ +...+++++|||++.+|+++. ++.|+|||+++++.+..+..+ .++.++
T Consensus 594 ~~~~~~~~~~~v~~~~~sp~~~~l~~~~----~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 669 (694)
T 3dm0_A 594 KKLYSLEANSVIHALCFSPNRYWLCAAT----EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLN 669 (694)
T ss_dssp EEEECCBCSSCEEEEEECSSSSEEEEEE----TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEE
T ss_pred ceEEEecCCCcEEEEEEcCCCcEEEEEc----CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEE
Confidence 445555 467799999999999888765 246999999999887765421 145689
Q ss_pred ECCCCCEEEEEEcCCceeeCCcEEEEeec
Q 013871 287 WSPDGRYFMTATTAPRLQIDNGIKIFHHN 315 (434)
Q Consensus 287 wspdg~~l~tas~~prl~~D~~i~iw~~~ 315 (434)
|||||++|++++. |+.|+||++.
T Consensus 670 ~spdg~~l~sgs~------Dg~i~iW~i~ 692 (694)
T 3dm0_A 670 WSADGSTLFSGYT------DGVIRVWGIG 692 (694)
T ss_dssp ECTTSSEEEEEET------TSEEEEEEC-
T ss_pred EcCCCCEEEEEcC------CCeEEEEecc
Confidence 9999999999999 9999999974
No 33
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=99.97 E-value=2e-27 Score=224.12 Aligned_cols=265 Identities=12% Similarity=0.119 Sum_probs=201.8
Q ss_pred EEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCC
Q 013871 39 VYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSP 117 (434)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~ 117 (434)
.++|..+. ..+.+++|+||+++|+++. |++|++||+...........+...|..+.|+|+ +..++. ++.+
T Consensus 6 ~~~~~~h~---~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s-----~s~d 76 (304)
T 2ynn_A 6 KKTFSNRS---DRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIAR-KNWIIV-----GSDD 76 (304)
T ss_dssp EEEEEEEC---SCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGG-GTEEEE-----EETT
T ss_pred EEeecCCC---CceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCC-CCEEEE-----ECCC
Confidence 45565543 6777999999999999884 689999999875443444455667999999998 455543 3456
Q ss_pred ceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCccee-eeecCCCC
Q 013871 118 ASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEG-LVPLRKEG 196 (434)
Q Consensus 118 ~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~-~v~l~~~~ 196 (434)
+.|++|++.+ ++.+.....|...+..+.|+|++..|+. ...|.+.+.|. + ...... .....+..
T Consensus 77 ~~i~vwd~~~---~~~~~~~~~h~~~v~~~~~~~~~~~l~s---gs~D~~v~lWd-------~--~~~~~~~~~~~~h~~ 141 (304)
T 2ynn_A 77 FRIRVFNYNT---GEKVVDFEAHPDYIRSIAVHPTKPYVLS---GSDDLTVKLWN-------W--ENNWALEQTFEGHEH 141 (304)
T ss_dssp SEEEEEETTT---CCEEEEEECCSSCEEEEEECSSSSEEEE---EETTSCEEEEE-------G--GGTTEEEEEECCCCS
T ss_pred CEEEEEECCC---CcEEEEEeCCCCcEEEEEEcCCCCEEEE---ECCCCeEEEEE-------C--CCCcchhhhhcccCC
Confidence 8999999988 7888888889999999999999997643 33555555443 2 121111 12223578
Q ss_pred CeEEEEECc-CCCEEEEEEccCCCeEEEEeccc-ceeEEe---CCcCeeEEEECC--CCCeEEEEecCCCCCeEEEEEcc
Q 013871 197 PVHDVQWSY-SGSEFAVVYGFMPASATIFNKKC-RPILEL---GSGPYNTVRWNP--KGKFLCLAGFGNLPGDMAFWDYV 269 (434)
Q Consensus 197 ~i~~v~wsp-dg~~~av~~g~~~~~v~l~d~~~-~~~~~~---~~~~~~~i~~SP--~g~~l~~~~~~~~~g~i~iwd~~ 269 (434)
.|.+++|+| ++..|+ +|..|+.|++||++. .....+ +...++.+.|+| ++++|++++ .+|.|+|||++
T Consensus 142 ~v~~v~~~p~~~~~l~--sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s---~D~~i~iWd~~ 216 (304)
T 2ynn_A 142 FVMCVAFNPKDPSTFA--SGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITAS---DDLTIKIWDYQ 216 (304)
T ss_dssp CEEEEEECTTCTTEEE--EEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEE---TTSEEEEEETT
T ss_pred cEEEEEECCCCCCEEE--EEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEc---CCCeEEEEeCC
Confidence 999999999 567777 688899999999853 333333 457788999987 778999998 56799999999
Q ss_pred CCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec-Cceeeee--ecccceeeEEEcCCCC
Q 013871 270 DGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLFFKK--MFDKLFQAEWKPVSPD 338 (434)
Q Consensus 270 ~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~-g~~~~~~--~~~~~~~~~w~p~~~~ 338 (434)
+++++..+.+| .+..++|+|++++|++++. |+.|+|||.. ++++... +.+.++.++|.|.+..
T Consensus 217 ~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~------Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (304)
T 2ynn_A 217 TKSCVATLEGHMSNVSFAVFHPTLPIIISGSE------DGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRK 284 (304)
T ss_dssp TTEEEEEEECCSSCEEEEEECSSSSEEEEEET------TSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGG
T ss_pred CCccceeeCCCCCCEEEEEECCCCCEEEEEcC------CCeEEEEECCCCceeeeccCCCccEEEEEECCCCCc
Confidence 99999999887 5566999999999999999 9999999995 4555444 3467899999998754
No 34
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.97 E-value=2.5e-29 Score=247.05 Aligned_cols=304 Identities=12% Similarity=0.096 Sum_probs=214.1
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF 80 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~ 80 (434)
+++++|||+|++|++.+ .|+.|++||+.+++....+..+ .......|++|+++|+++. ++.|++|++...
T Consensus 59 ~~~~~~s~~g~~l~~~~-----~d~~v~i~d~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 129 (420)
T 3vl1_A 59 GKGNTFEKVGSHLYKAR-----LDGHDFLFNTIIRDGSKMLKRA----DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFN 129 (420)
T ss_dssp CTTCEEEEEETTEEEEE-----ETTEEEEEECCSEETTTTSCSC----CEEEEEEECSSSCEEEEEETTSCEEEECTTSC
T ss_pred ccceeeeecCCeEEEEE-----cCCcEEEEEecccceeeEEecC----CceEEEEEecCCCEEEEEECCCCEEEEeCCCc
Confidence 35789999999999999 7899999999887654333222 2232457899999999884 679999998764
Q ss_pred CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEE
Q 013871 81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVA 160 (434)
Q Consensus 81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~ 160 (434)
........+...|.+++|+|+ +..++. .+.++.|++|++.+ .+.+.....|...+..+.|+|+|+.|+..
T Consensus 130 ~~~~~~~~h~~~v~~~~~~~~-~~~l~s-----~s~d~~i~iwd~~~---~~~~~~~~~h~~~v~~~~~~~~~~~l~s~- 199 (420)
T 3vl1_A 130 LQREIDQAHVSEITKLKFFPS-GEALIS-----SSQDMQLKIWSVKD---GSNPRTLIGHRATVTDIAIIDRGRNVLSA- 199 (420)
T ss_dssp EEEEETTSSSSCEEEEEECTT-SSEEEE-----EETTSEEEEEETTT---CCCCEEEECCSSCEEEEEEETTTTEEEEE-
T ss_pred ceeeecccccCccEEEEECCC-CCEEEE-----EeCCCeEEEEeCCC---CcCceEEcCCCCcEEEEEEcCCCCEEEEE-
Confidence 432222345678999999998 455553 24567999999988 67778888889999999999999987543
Q ss_pred EecccccCceeecce--eEEEEeeCCcceee---e----------ecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEe
Q 013871 161 QSDVDKTNQSYYGES--KLNYLTTDGTHEGL---V----------PLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFN 225 (434)
Q Consensus 161 ~~~~d~~~~~~~g~~--~l~~l~~~~~~~~~---v----------~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d 225 (434)
..|.+.+.|.-.. .+..+......... + ......++.+++|+|+|+.++ +|..++.|.+||
T Consensus 200 --~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~--~~~~dg~i~i~d 275 (420)
T 3vl1_A 200 --SLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVI--AGHVSGVITVHN 275 (420)
T ss_dssp --ETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEE--EEETTSCEEEEE
T ss_pred --cCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEE--EEcCCCeEEEEE
Confidence 2455555443211 11111110000000 0 000135666677789998887 577899999999
Q ss_pred ccc-ceeEEe---CCcCeeEEEECCCCC-eEEEEecCCCCCeEEEEEccCCE-EEEEeeC-C-CceEEEECCCCCEEEEE
Q 013871 226 KKC-RPILEL---GSGPYNTVRWNPKGK-FLCLAGFGNLPGDMAFWDYVDGK-QLGTTRA-E-CSVTSEWSPDGRYFMTA 297 (434)
Q Consensus 226 ~~~-~~~~~~---~~~~~~~i~~SP~g~-~l~~~~~~~~~g~i~iwd~~~~~-~i~~~~~-~-~~~~~~wspdg~~l~ta 297 (434)
++. ..+..+ +...+++++|+|+|+ +|++++ .+|.|++||+.+++ .+..+.. + ..+...++|+|++|+++
T Consensus 276 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~---~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~ 352 (420)
T 3vl1_A 276 VFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGY---ENGMLAQWDLRSPECPVGEFLINEGTPINNVYFAAGALFVSS 352 (420)
T ss_dssp TTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEE---TTSEEEEEETTCTTSCSEEEEESTTSCEEEEEEETTEEEEEE
T ss_pred CCCCceeEEcccccCCCceeEEEeCCCCCEEEEEe---CCCeEEEEEcCCCcCchhhhhccCCCCceEEEeCCCCEEEEe
Confidence 964 334444 567899999999999 899888 56799999999874 3444443 2 44444466789999999
Q ss_pred EcCCceeeCCcEEEEeecCc------------eeeeeecccceeeEEEcCCC
Q 013871 298 TTAPRLQIDNGIKIFHHNGS------------LFFKKMFDKLFQAEWKPVSP 337 (434)
Q Consensus 298 s~~prl~~D~~i~iw~~~g~------------~~~~~~~~~~~~~~w~p~~~ 337 (434)
+. |+.|+||++... .....+...+..++|.|++.
T Consensus 353 ~~------d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 398 (420)
T 3vl1_A 353 GF------DTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDE 398 (420)
T ss_dssp TT------TEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSS
T ss_pred cC------CccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCC
Confidence 98 999999998651 12223446789999999987
No 35
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.96 E-value=2e-27 Score=264.66 Aligned_cols=306 Identities=13% Similarity=0.136 Sum_probs=228.2
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF 80 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~ 80 (434)
|++++|||+|++|++++ .|+.|+|||+.+++.+..+..+. ..+.+++|+||+++|++++ +++|+|||+.+.
T Consensus 618 v~~~~~s~~~~~l~s~~-----~d~~i~vw~~~~~~~~~~~~~h~---~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~ 689 (1249)
T 3sfz_A 618 VYHACFSQDGQRIASCG-----ADKTLQVFKAETGEKLLDIKAHE---DEVLCCAFSSDDSYIATCSADKKVKIWDSATG 689 (1249)
T ss_dssp EEEEEECTTSSEEEEEE-----TTSCEEEEETTTCCEEEEECCCS---SCEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred EEEEEECCCCCEEEEEe-----CCCeEEEEECCCCCEEEEeccCC---CCEEEEEEecCCCEEEEEeCCCeEEEEECCCC
Confidence 78999999999999999 89999999999999999887643 6777999999999999985 679999999886
Q ss_pred CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEE
Q 013871 81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVA 160 (434)
Q Consensus 81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~ 160 (434)
........+...|.++.|+|+++..+.+. ++.++.|++|++.+ +..+.....|...+..+.|+|+|..++...
T Consensus 690 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s----g~~d~~v~vwd~~~---~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s 762 (1249)
T 3sfz_A 690 KLVHTYDEHSEQVNCCHFTNKSNHLLLAT----GSNDFFLKLWDLNQ---KECRNTMFGHTNSVNHCRFSPDDELLASCS 762 (1249)
T ss_dssp CEEEEEECCSSCEEEEEECSSSSCCEEEE----EETTSCEEEEETTS---SSEEEEECCCSSCEEEEEECSSTTEEEEEE
T ss_pred ceEEEEcCCCCcEEEEEEecCCCceEEEE----EeCCCeEEEEECCC---cchhheecCCCCCEEEEEEecCCCEEEEEE
Confidence 65445556677899999999754433221 34567899999988 777888888888999999999999765432
Q ss_pred EecccccCceeecce---------------------------------------------e-------------------
Q 013871 161 QSDVDKTNQSYYGES---------------------------------------------K------------------- 176 (434)
Q Consensus 161 ~~~~d~~~~~~~g~~---------------------------------------------~------------------- 176 (434)
.|.+.+.|.-.. .
T Consensus 763 ---~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~ 839 (1249)
T 3sfz_A 763 ---ADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGH 839 (1249)
T ss_dssp ---SSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSS
T ss_pred ---CCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCC
Confidence 333333331100 0
Q ss_pred ------------------------EEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccc---
Q 013871 177 ------------------------LNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR--- 229 (434)
Q Consensus 177 ------------------------l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~--- 229 (434)
+..++............+.+.|.+++|+|+|+.|+ +++.++.+.+||+...
T Consensus 840 ~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~--s~s~dg~v~vw~~~~~~~~ 917 (1249)
T 3sfz_A 840 HSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFL--TASDDQTIRVWETKKVCKN 917 (1249)
T ss_dssp SSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEE--EEETTSCEEEEEHHHHHSC
T ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEE--EEeCCCeEEEEEcccccee
Confidence 01111111111111123467899999999999988 5777899999996421
Q ss_pred -------------------------------------eeEEeCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCE
Q 013871 230 -------------------------------------PILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK 272 (434)
Q Consensus 230 -------------------------------------~~~~~~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~ 272 (434)
.....+...+.+++|+|+|+++++++ .+|.|.+||+.+++
T Consensus 918 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~---~~g~i~i~d~~~~~ 994 (1249)
T 3sfz_A 918 SAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGD---EDGAIKIIELPNNR 994 (1249)
T ss_dssp CSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEE---TTSCCEEEETTTTS
T ss_pred eeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEc---CCCCEEEEEcCCCc
Confidence 01112356788999999999999998 56799999999998
Q ss_pred EEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCce-eee-eecccceeeEEEcCC
Q 013871 273 QLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL-FFK-KMFDKLFQAEWKPVS 336 (434)
Q Consensus 273 ~i~~~~~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~-~~~-~~~~~~~~~~w~p~~ 336 (434)
.+..+.+| .+..++|+|||++|++++. |+.|++|++.... +.. .+...+..+.|.|..
T Consensus 995 ~~~~~~~h~~~v~~l~~s~dg~~l~s~~~------dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~ 1056 (1249)
T 3sfz_A 995 VFSSGVGHKKAVRHIQFTADGKTLISSSE------DSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDS 1056 (1249)
T ss_dssp CEEECCCCSSCCCCEEECSSSSCEEEECS------SSBEEEEETTTTEEECCBCCSSCEEEEEECSSS
T ss_pred eeeecccCCCceEEEEECCCCCEEEEEcC------CCEEEEEECCCCceEEEecCCCcEEEEEEcCCC
Confidence 88877766 5666999999999999999 9999999996543 322 244567888888854
No 36
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.96 E-value=2.4e-27 Score=227.04 Aligned_cols=280 Identities=10% Similarity=0.129 Sum_probs=198.6
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCC---CcEEEEec-CCeEEEEeC
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSD---EAVACRMA-TNEIQFFDT 77 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d---~~~la~~~-~~~i~v~~~ 77 (434)
|.+++|||+|.+|++.+.. ...|+.|+|||+.+++........ +...+.+++|+|+ +.+|+++. ++.|++|++
T Consensus 21 v~~~~~~p~~~~l~~~~s~-~~~d~~v~iw~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 97 (357)
T 3i2n_A 21 VFDCKWVPCSAKFVTMGNF-ARGTGVIQLYEIQHGDLKLLREIE--KAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNL 97 (357)
T ss_dssp EEEEEECTTSSEEEEEEC---CCCEEEEEEEECSSSEEEEEEEE--ESSCEEEEECTTCCTTTCCEEEEETTSCEEEECT
T ss_pred eEEEEEcCCCceEEEecCc-cCCCcEEEEEeCCCCcccceeeec--ccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeC
Confidence 7899999999766644410 012799999999999875543322 2367779999998 68888874 689999999
Q ss_pred CCCC-CceeeeeecCCeeEEEE------eCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeeccc----ceeE
Q 013871 78 TDFP-KGILYRLRVPGVAAFEV------SKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRC----STVQ 146 (434)
Q Consensus 78 ~~~~-~~~~~~~~~~~v~~~~~------sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~----~~~~ 146 (434)
.... .......+...|.++.| +|+ +..+++ .+.++.|++|++... ...+.....+.. .+..
T Consensus 98 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~-~~~l~~-----~~~d~~i~vwd~~~~--~~~~~~~~~~~~~~~~~v~~ 169 (357)
T 3i2n_A 98 EAPEMPVYSVKGHKEIINAIDGIGGLGIGEG-APEIVT-----GSRDGTVKVWDPRQK--DDPVANMEPVQGENKRDCWT 169 (357)
T ss_dssp TSCSSCSEEECCCSSCEEEEEEESGGGCC-C-CCEEEE-----EETTSCEEEECTTSC--SSCSEEECCCTTSCCCCEEE
T ss_pred CCCCccEEEEEecccceEEEeeccccccCCC-ccEEEE-----EeCCCeEEEEeCCCC--CCcceeccccCCCCCCceEE
Confidence 8765 33444556677888865 555 445543 245678999999873 224555544333 5566
Q ss_pred EE----ECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECc---CCCEEEEEEccCCC
Q 013871 147 LN----WNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSY---SGSEFAVVYGFMPA 219 (434)
Q Consensus 147 ~~----ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wsp---dg~~~av~~g~~~~ 219 (434)
+. |+++|..+++.. .|. .++.+++... .......+...|.+++|+| ++..|++ +..++
T Consensus 170 ~~~~~~~~~~~~~l~~~~---~d~---------~i~i~d~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~l~~--~~~dg 234 (357)
T 3i2n_A 170 VAFGNAYNQEERVVCAGY---DNG---------DIKLFDLRNM-ALRWETNIKNGVCSLEFDRKDISMNKLVA--TSLEG 234 (357)
T ss_dssp EEEECCCC-CCCEEEEEE---TTS---------EEEEEETTTT-EEEEEEECSSCEEEEEESCSSSSCCEEEE--EESTT
T ss_pred EEEEeccCCCCCEEEEEc---cCC---------eEEEEECccC-ceeeecCCCCceEEEEcCCCCCCCCEEEE--ECCCC
Confidence 66 789999876532 222 2444554444 2333344578999999999 8988884 67789
Q ss_pred eEEEEecccce---eEE-----eCCcCeeEEEECCCCC-eEEEEecCCCCCeEEEEEccCC-------------------
Q 013871 220 SATIFNKKCRP---ILE-----LGSGPYNTVRWNPKGK-FLCLAGFGNLPGDMAFWDYVDG------------------- 271 (434)
Q Consensus 220 ~v~l~d~~~~~---~~~-----~~~~~~~~i~~SP~g~-~l~~~~~~~~~g~i~iwd~~~~------------------- 271 (434)
.|.+||++... ... .|...+++++|+|+|+ +|++++ .+|.|++||++++
T Consensus 235 ~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~ 311 (357)
T 3i2n_A 235 KFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAG---GAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSV 311 (357)
T ss_dssp EEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEE---TTSEEEEEEEECCSCC--CCTTSCCCCCCCEE
T ss_pred eEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEe---CCCcEEEeecCCCcccccccCCCCcccccccc
Confidence 99999986322 111 4788999999999999 788888 5679999998853
Q ss_pred EEEEEeeCC--CceEEEECCCCCEEE-EEEcCCceeeCCcEEEEeecC
Q 013871 272 KQLGTTRAE--CSVTSEWSPDGRYFM-TATTAPRLQIDNGIKIFHHNG 316 (434)
Q Consensus 272 ~~i~~~~~~--~~~~~~wspdg~~l~-tas~~prl~~D~~i~iw~~~g 316 (434)
+.+..+..| .+..++|+|+|++|+ +++. |+.|+||++..
T Consensus 312 ~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~------d~~i~iw~~~~ 353 (357)
T 3i2n_A 312 SLLQNVTLSTQPISSLDWSPDKRGLCVCSSF------DQTVRVLIVTK 353 (357)
T ss_dssp EEEEEEECCSSCEEEEEECSSSTTEEEEEET------TSEEEEEEECC
T ss_pred ceeeccccCCCCeeEEEEcCCCCeEEEEecC------CCcEEEEECCC
Confidence 456666665 566799999999998 7888 99999999854
No 37
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.96 E-value=5.8e-27 Score=229.54 Aligned_cols=277 Identities=15% Similarity=0.211 Sum_probs=206.2
Q ss_pred ceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCC
Q 013871 3 LLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFP 81 (434)
Q Consensus 3 ~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~ 81 (434)
.+++||+ ..|++++ .|+.|+|||+.+++.+..+... +...+.+++|+||+++|+++. ++.|++|++....
T Consensus 97 ~~~~~s~--~~l~~~~-----~d~~v~lw~~~~~~~~~~~~~~--~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~ 167 (401)
T 4aez_A 97 NLLDWSN--LNVVAVA-----LERNVYVWNADSGSVSALAETD--ESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQT 167 (401)
T ss_dssp BCEEECT--TSEEEEE-----ETTEEEEEETTTCCEEEEEECC--TTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred EEEeecC--CCEEEEE-----CCCeEEEeeCCCCcEeEeeecC--CCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCe
Confidence 3466665 5577777 7899999999999988777654 336777999999999999885 6899999998765
Q ss_pred CceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEE
Q 013871 82 KGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQ 161 (434)
Q Consensus 82 ~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~ 161 (434)
.......+...|.+++|++ ..+++ ++.++.|++|++... ...+.....+...+..+.|+|+|..+++..
T Consensus 168 ~~~~~~~~~~~v~~~~~~~---~~l~~-----~~~dg~i~i~d~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~- 236 (401)
T 4aez_A 168 KLRTMAGHQARVGCLSWNR---HVLSS-----GSRSGAIHHHDVRIA--NHQIGTLQGHSSEVCGLAWRSDGLQLASGG- 236 (401)
T ss_dssp EEEEECCCSSCEEEEEEET---TEEEE-----EETTSEEEEEETTSS--SCEEEEEECCSSCEEEEEECTTSSEEEEEE-
T ss_pred EEEEecCCCCceEEEEECC---CEEEE-----EcCCCCEEEEecccC--cceeeEEcCCCCCeeEEEEcCCCCEEEEEe-
Confidence 4444455667899999964 34443 245679999999842 566777778889999999999999876532
Q ss_pred ecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEE-ccCCCeEEEEecc-cceeEEe-CCcC
Q 013871 162 SDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVY-GFMPASATIFNKK-CRPILEL-GSGP 238 (434)
Q Consensus 162 ~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~-g~~~~~v~l~d~~-~~~~~~~-~~~~ 238 (434)
.|... ..+++...........+...|.+++|+|++..+++.. |..++.+.+||++ +..+..+ +...
T Consensus 237 --~d~~v---------~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~ 305 (401)
T 4aez_A 237 --NDNVV---------QIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQ 305 (401)
T ss_dssp --TTSCE---------EEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSSC
T ss_pred --CCCeE---------EEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCCc
Confidence 33333 3333333322222224578999999999887776643 3479999999996 4445555 5778
Q ss_pred eeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEE--eeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEee
Q 013871 239 YNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGT--TRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH 314 (434)
Q Consensus 239 ~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~--~~~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~ 314 (434)
+++++|+|+|++|++++. ..+|.|.|||+.+++.... +.+| .+..++|+|||++|++++. |+.|+||++
T Consensus 306 v~~~~~s~~~~~l~~~~g-~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~------dg~i~iw~~ 378 (401)
T 4aez_A 306 VTSLIWSPHSKEIMSTHG-FPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAAS------DENLKFWRV 378 (401)
T ss_dssp EEEEEECSSSSEEEEEEC-TTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECT------TSEEEEEEC
T ss_pred EEEEEECCCCCeEEEEee-cCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeC------CCcEEEEEC
Confidence 999999999999998642 1468999999998754443 4454 6677999999999999999 999999999
Q ss_pred cCc
Q 013871 315 NGS 317 (434)
Q Consensus 315 ~g~ 317 (434)
...
T Consensus 379 ~~~ 381 (401)
T 4aez_A 379 YDG 381 (401)
T ss_dssp CC-
T ss_pred CCC
Confidence 543
No 38
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.96 E-value=4e-27 Score=229.31 Aligned_cols=274 Identities=14% Similarity=0.194 Sum_probs=202.2
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCc------EEEEEeecCcCCCCCCeeeecCC----C---cEEEEec
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGE------AVYQLFQKNMTKTTWPSIRFSSD----E---AVACRMA 68 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~------~~~~~~~~~~~~~~~~~~~~S~d----~---~~la~~~ 68 (434)
|++|+|+| ++|++++ .|+.|+|||+.+++ .+..+..+. ..+.+++|+|+ + ++|+++.
T Consensus 19 i~~~~~~~--~~l~s~~-----~dg~i~iw~~~~~~~~~~~~~~~~~~~h~---~~v~~~~~~~~~~~~g~~~~~l~s~~ 88 (397)
T 1sq9_A 19 IFSVSACN--SFTVSCS-----GDGYLKVWDNKLLDNENPKDKSYSHFVHK---SGLHHVDVLQAIERDAFELCLVATTS 88 (397)
T ss_dssp EEEEEECS--SEEEEEE-----TTSEEEEEESBCCTTCCGGGGEEEEECCT---TCEEEEEEEEEEETTTEEEEEEEEEE
T ss_pred eEEEEecC--CeEEEEc-----CCCEEEEEECCCcccccCCCcceEEecCC---CcEEEEEEecccccCCccccEEEEEc
Confidence 78999999 8999999 89999999999887 667776543 67779999999 9 8888874
Q ss_pred -CCeEEEEeCCCCCC-----ceeeeee-----cCCeeEEEEe----CCCCCe-EEEEecCCCCCCceEEEEEcCCCCC--
Q 013871 69 -TNEIQFFDTTDFPK-----GILYRLR-----VPGVAAFEVS----KAPGSH-VAVFVPESKGSPASVQIYACGKDLQ-- 130 (434)
Q Consensus 69 -~~~i~v~~~~~~~~-----~~~~~~~-----~~~v~~~~~s----p~~~~~-ia~~~~~~~~~~~~v~i~~~~~~~~-- 130 (434)
++.|++|++..... ......+ ...|.++.|+ |++ .. +++. +.++.|++|++.....
T Consensus 89 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~l~~~-----~~dg~i~iwd~~~~~~~~ 162 (397)
T 1sq9_A 89 FSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLL-SHRLVAT-----DVKGTTYIWKFHPFADES 162 (397)
T ss_dssp TTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC-----CEEEEEE-----ETTSCEEEEEEESSSSHH
T ss_pred CCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCC-ceEEEEE-----eCCCcEEEEeCCcccccc
Confidence 68999999877553 2333334 3679999999 874 44 5432 3457899999976100
Q ss_pred -CCcee-----ee-------eecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecC----
Q 013871 131 -SQPLA-----RR-------SFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR---- 193 (434)
Q Consensus 131 -~~~i~-----~~-------~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~---- 193 (434)
...+. .. ..+...+..+.|+|+| .+++. . .|.. ++.+++... .....+.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~-~--~dg~---------i~i~d~~~~-~~~~~~~~~~~ 228 (397)
T 1sq9_A 163 NSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATG-F--NNGT---------VQISELSTL-RPLYNFESQHS 228 (397)
T ss_dssp HHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEE-C--TTSE---------EEEEETTTT-EEEEEEECCC-
T ss_pred ccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEE-e--CCCc---------EEEEECCCC-ceeEEEecccc
Confidence 01222 33 2356778899999999 54432 1 2222 334444332 2222222
Q ss_pred C---CCCeEEEEECcCCCEEEEEEccCC---CeEEEEecc-cceeEEe---------------CCcCeeEEEECCCCCeE
Q 013871 194 K---EGPVHDVQWSYSGSEFAVVYGFMP---ASATIFNKK-CRPILEL---------------GSGPYNTVRWNPKGKFL 251 (434)
Q Consensus 194 ~---~~~i~~v~wspdg~~~av~~g~~~---~~v~l~d~~-~~~~~~~---------------~~~~~~~i~~SP~g~~l 251 (434)
+ ..+|.+++|+|+++.|++ +..+ +.|.+||++ ...+..+ |...+.+++|+|+|++|
T Consensus 229 h~~~~~~i~~i~~~~~~~~l~~--~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 306 (397)
T 1sq9_A 229 MINNSNSIRSVKFSPQGSLLAI--AHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETL 306 (397)
T ss_dssp --CCCCCEEEEEECSSTTEEEE--EEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEE
T ss_pred ccccCCccceEEECCCCCEEEE--EecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEE
Confidence 3 789999999999999884 6667 899999986 3444444 57889999999999999
Q ss_pred EEEecCCCCCeEEEEEccCCEEEEEee------C-----------------CCceEEEECCCC----------CEEEEEE
Q 013871 252 CLAGFGNLPGDMAFWDYVDGKQLGTTR------A-----------------ECSVTSEWSPDG----------RYFMTAT 298 (434)
Q Consensus 252 ~~~~~~~~~g~i~iwd~~~~~~i~~~~------~-----------------~~~~~~~wspdg----------~~l~tas 298 (434)
++++ .+|.|+|||+.+++.+..+. . ..+..++|+|+| ++|++++
T Consensus 307 ~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~ 383 (397)
T 1sq9_A 307 CSAG---WDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVC 383 (397)
T ss_dssp EEEE---TTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEE
T ss_pred EEEe---CCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEec
Confidence 9998 56799999999999998888 3 356679999999 7999999
Q ss_pred cCCceeeCCcEEEEeecC
Q 013871 299 TAPRLQIDNGIKIFHHNG 316 (434)
Q Consensus 299 ~~prl~~D~~i~iw~~~g 316 (434)
. |+.|+||++.+
T Consensus 384 ~------dg~i~iw~~~~ 395 (397)
T 1sq9_A 384 L------DRSIRWFREAG 395 (397)
T ss_dssp T------TTEEEEEEEEC
T ss_pred C------CCcEEEEEcCC
Confidence 9 99999999864
No 39
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.96 E-value=1.2e-27 Score=237.03 Aligned_cols=281 Identities=14% Similarity=0.131 Sum_probs=196.9
Q ss_pred cceEEecC-CCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecC-CCcEEEEec-CCeEEEEeCC
Q 013871 2 LLLLTCLR-VGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSS-DEAVACRMA-TNEIQFFDTT 78 (434)
Q Consensus 2 V~~l~fSP-~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~-d~~~la~~~-~~~i~v~~~~ 78 (434)
|+||+||| ++++||+++ .|++|+|||+.+++....+... .|...|.+++|+| |+.+|++++ |++|++||+.
T Consensus 122 V~~l~~~P~~~~~lasGs-----~dg~i~lWd~~~~~~~~~~~~~-gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~ 195 (435)
T 4e54_B 122 ATSLAWHPTHPSTVAVGS-----KGGDIMLWNFGIKDKPTFIKGI-GAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFK 195 (435)
T ss_dssp EEEEEECSSCTTCEEEEE-----TTSCEEEECSSCCSCCEEECCC-SSSCCCCEEEECSSCTTEEEEECSSSCEEEEETT
T ss_pred EEEEEEeCCCCCEEEEEe-----CCCEEEEEECCCCCceeEEEcc-CCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeecc
Confidence 78999999 578999999 8999999999887654333222 2447788999998 788888884 6899999986
Q ss_pred CCCCceeeeee--cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeE
Q 013871 79 DFPKGILYRLR--VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGL 156 (434)
Q Consensus 79 ~~~~~~~~~~~--~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l 156 (434)
..........+ ...+.+++|+|+ +.++++ ++.++.|++|++.. +.+.....|...+..+.|+|++..+
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~-----g~~dg~i~~wd~~~----~~~~~~~~h~~~v~~v~~~p~~~~~ 265 (435)
T 4e54_B 196 GNILRVFASSDTINIWFCSLDVSAS-SRMVVT-----GDNVGNVILLNMDG----KELWNLRMHKKKVTHVALNPCCDWF 265 (435)
T ss_dssp SCEEEEEECCSSCSCCCCCEEEETT-TTEEEE-----ECSSSBEEEEESSS----CBCCCSBCCSSCEEEEEECTTCSSE
T ss_pred CCceeEEeccCCCCccEEEEEECCC-CCEEEE-----EeCCCcEeeeccCc----ceeEEEecccceEEeeeecCCCceE
Confidence 53211111111 124678999998 455553 35678999999853 5666777888899999999999877
Q ss_pred EEEEEecccccCceeecceeEEEEeeCCccee-eeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-ceeEEe
Q 013871 157 LAVAQSDVDKTNQSYYGESKLNYLTTDGTHEG-LVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL 234 (434)
Q Consensus 157 ~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~-~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~-~~~~~~ 234 (434)
++.++ .|.+.+. |.+........ .....+..+|.+++|+|+|++|+ +++.|+.|+|||++. .....+
T Consensus 266 ~~s~s--~d~~v~i-------wd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~--s~~~D~~i~iwd~~~~~~~~~~ 334 (435)
T 4e54_B 266 LATAS--VDQTVKI-------WDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLL--TTDQKSEIRVYSASQWDCPLGL 334 (435)
T ss_dssp EEEEE--TTSBCCE-------EETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEE--EEESSSCEEEEESSSSSSEEEE
T ss_pred EEEec--CcceeeE-------EecccccccceEEEeeeccccccceeECCCCCeeE--EEcCCCEEEEEECCCCccceEE
Confidence 65433 4555543 33322111111 11233578999999999999988 578899999999863 333322
Q ss_pred --CC------cCeeEEEECCCCCeEEEEecCC---------CCCeEEEEEccCCEEEEEeeC-C--CceE-EEECCCCCE
Q 013871 235 --GS------GPYNTVRWNPKGKFLCLAGFGN---------LPGDMAFWDYVDGKQLGTTRA-E--CSVT-SEWSPDGRY 293 (434)
Q Consensus 235 --~~------~~~~~i~~SP~g~~l~~~~~~~---------~~g~i~iwd~~~~~~i~~~~~-~--~~~~-~~wspdg~~ 293 (434)
+. .....+.|+|++.+++++...+ .++.|++||..+++.+..+.. | .+.. ++|||||++
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~ 414 (435)
T 4e54_B 335 IPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDT 414 (435)
T ss_dssp CCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSC
T ss_pred ecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCE
Confidence 11 1234567888888888775422 235799999999988887643 3 3444 479999999
Q ss_pred EEEEEcCCceeeCCcEEEEeecC
Q 013871 294 FMTATTAPRLQIDNGIKIFHHNG 316 (434)
Q Consensus 294 l~tas~~prl~~D~~i~iw~~~g 316 (434)
|++++ |+.|+||++..
T Consensus 415 lasg~-------d~~i~iW~~~~ 430 (435)
T 4e54_B 415 LASAM-------GYHILIWSQQE 430 (435)
T ss_dssp EEEEC-------SSEEEECCCC-
T ss_pred EEEEc-------CCcEEEEECCc
Confidence 98764 78999999843
No 40
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.96 E-value=4.2e-27 Score=250.63 Aligned_cols=274 Identities=12% Similarity=0.077 Sum_probs=211.2
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF 80 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~ 80 (434)
|.+++|||+|++|++++ .|+.|+|||+.+++.+..+..+. ..+.++.|+||+++|+++. ++.|++|+..+.
T Consensus 16 v~~i~~sp~~~~la~~~-----~~g~v~iwd~~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~ 87 (814)
T 3mkq_A 16 VKGIDFHPTEPWVLTTL-----YSGRVEIWNYETQVEVRSIQVTE---TPVRAGKFIARKNWIIVGSDDFRIRVFNYNTG 87 (814)
T ss_dssp EEEEEECSSSSEEEEEE-----TTSEEEEEETTTTEEEEEEECCS---SCEEEEEEEGGGTEEEEEETTSEEEEEETTTC
T ss_pred eEEEEECCCCCEEEEEe-----CCCEEEEEECCCCceEEEEecCC---CcEEEEEEeCCCCEEEEEeCCCeEEEEECCCC
Confidence 78999999999999998 78999999999999998887654 6777999999999999885 679999999876
Q ss_pred CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECC-CCCeEEEE
Q 013871 81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNR-GSTGLLAV 159 (434)
Q Consensus 81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~-~G~~l~~~ 159 (434)
........+...|.+++|+|+ +..+++. +.++.|++|++... .........+...+..+.|+| +|..+++.
T Consensus 88 ~~~~~~~~~~~~v~~~~~s~~-~~~l~~~-----~~dg~i~vw~~~~~--~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~ 159 (814)
T 3mkq_A 88 EKVVDFEAHPDYIRSIAVHPT-KPYVLSG-----SDDLTVKLWNWENN--WALEQTFEGHEHFVMCVAFNPKDPSTFASG 159 (814)
T ss_dssp CEEEEEECCSSCEEEEEECSS-SSEEEEE-----ETTSEEEEEEGGGT--SEEEEEEECCSSCEEEEEEETTEEEEEEEE
T ss_pred cEEEEEecCCCCEEEEEEeCC-CCEEEEE-----cCCCEEEEEECCCC--ceEEEEEcCCCCcEEEEEEEcCCCCEEEEE
Confidence 654444556678999999999 5555532 45679999999762 255666677888899999999 66665442
Q ss_pred EEecccccCceeecceeEEEEeeCCcc-eeeeecCCCCCeEEEEECc--CCCEEEEEEccCCCeEEEEeccc-ceeEEe-
Q 013871 160 AQSDVDKTNQSYYGESKLNYLTTDGTH-EGLVPLRKEGPVHDVQWSY--SGSEFAVVYGFMPASATIFNKKC-RPILEL- 234 (434)
Q Consensus 160 ~~~~~d~~~~~~~g~~~l~~l~~~~~~-~~~v~l~~~~~i~~v~wsp--dg~~~av~~g~~~~~v~l~d~~~-~~~~~~- 234 (434)
+ .|.+ +..+++.... ...+......++..++|+| ++..++ ++..++.+.+||++. ..+..+
T Consensus 160 -~--~dg~---------v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~--~~~~dg~i~~~d~~~~~~~~~~~ 225 (814)
T 3mkq_A 160 -C--LDRT---------VKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI--TASDDLTIKIWDYQTKSCVATLE 225 (814)
T ss_dssp -E--TTSE---------EEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEE--EECTTSEEEEEETTTTEEEEEEE
T ss_pred -e--CCCe---------EEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEE--EEeCCCEEEEEECCCCcEEEEEc
Confidence 2 2322 3333333221 2222233358899999999 888888 577889999999864 334444
Q ss_pred -CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEE-EEEEcCCceeeCCcEE
Q 013871 235 -GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYF-MTATTAPRLQIDNGIK 310 (434)
Q Consensus 235 -~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l-~tas~~prl~~D~~i~ 310 (434)
|...+.+++|+|+|++|++++ .+|.|++||+.+++.+..+..+ .+..++|+|+|+.+ ++++. |+++.
T Consensus 226 ~~~~~v~~~~~~~~~~~l~~~~---~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~------~~~~~ 296 (814)
T 3mkq_A 226 GHMSNVSFAVFHPTLPIIISGS---EDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGF------DNGFT 296 (814)
T ss_dssp CCSSCEEEEEECSSSSEEEEEE---TTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEE------TTEEE
T ss_pred CCCCCEEEEEEcCCCCEEEEEe---CCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEe------CCCEE
Confidence 678999999999999999998 5679999999999888888765 66679999999843 44445 78888
Q ss_pred EEee
Q 013871 311 IFHH 314 (434)
Q Consensus 311 iw~~ 314 (434)
+|++
T Consensus 297 ~~~~ 300 (814)
T 3mkq_A 297 VLSL 300 (814)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 8886
No 41
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=99.96 E-value=1.7e-26 Score=221.34 Aligned_cols=273 Identities=12% Similarity=0.073 Sum_probs=202.8
Q ss_pred cEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCC
Q 013871 37 EAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKG 115 (434)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~ 115 (434)
+...++..+ ...+.+++|+||+++|++++ |++|++||............+...|..++|+|+ +..+++ ++
T Consensus 46 ~~~~~l~gH---~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~s-----~~ 116 (340)
T 1got_B 46 RTRRTLRGH---LAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS-GNYVAC-----GG 116 (340)
T ss_dssp CEEEEECCC---SSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTT-SSEEEE-----EE
T ss_pred hhheeecCC---CCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCC-CCEEEE-----Ee
Confidence 345556554 36777999999999999985 679999999876654445566677999999998 555554 34
Q ss_pred CCceEEEEEcCCCCC-CCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCC
Q 013871 116 SPASVQIYACGKDLQ-SQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK 194 (434)
Q Consensus 116 ~~~~v~i~~~~~~~~-~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~ 194 (434)
.++.|++|++..... .........|...+..+.|++++. ++. ...|.+.+.| ++........-..+
T Consensus 117 ~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s---~s~d~~i~~w---------d~~~~~~~~~~~~h 183 (340)
T 1got_B 117 LDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVT---SSGDTTCALW---------DIETGQQTTTFTGH 183 (340)
T ss_dssp TTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEE---EETTSCEEEE---------ETTTTEEEEEECCC
T ss_pred CCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc-EEE---EECCCcEEEE---------ECCCCcEEEEEcCC
Confidence 568999999976311 123344556777888899998876 322 2244444433 33332111122235
Q ss_pred CCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-ceeEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC
Q 013871 195 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG 271 (434)
Q Consensus 195 ~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~-~~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~ 271 (434)
.+.|.+++|+|+++.|+ +|..|+.|++||++. ..+..+ |...+++++|+|+|++|++++ .+|.|+|||+.++
T Consensus 184 ~~~v~~~~~~~~~~~l~--sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s---~d~~v~iwd~~~~ 258 (340)
T 1got_B 184 TGDVMSLSLAPDTRLFV--SGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGS---DDATCRLFDLRAD 258 (340)
T ss_dssp SSCEEEEEECTTSSEEE--EEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEE---TTSCEEEEETTTT
T ss_pred CCceEEEEECCCCCEEE--EEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEc---CCCcEEEEECCCC
Confidence 78999999999999888 688899999999964 344444 788999999999999999999 5679999999999
Q ss_pred EEEEEeeCC----CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec-Cceeee--eecccceeeEEEcCCCCCCCC
Q 013871 272 KQLGTTRAE----CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLFFK--KMFDKLFQAEWKPVSPDKFGD 342 (434)
Q Consensus 272 ~~i~~~~~~----~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~-g~~~~~--~~~~~~~~~~w~p~~~~~~~~ 342 (434)
+.+..+..+ .+..++|+|+|++|++++. |+.|+|||+. +..+.. .+...+..+.|.|++..+++.
T Consensus 259 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~------d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~ 330 (340)
T 1got_B 259 QELMTYSHDNIICGITSVSFSKSGRLLLAGYD------DFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATG 330 (340)
T ss_dssp EEEEEECCTTCCSCEEEEEECTTSSEEEEEET------TSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEE
T ss_pred cEEEEEccCCcccceEEEEECCCCCEEEEECC------CCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEE
Confidence 888777543 4667999999999999999 9999999984 444433 355689999999998877665
No 42
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=99.96 E-value=5.7e-27 Score=230.57 Aligned_cols=263 Identities=11% Similarity=0.116 Sum_probs=206.0
Q ss_pred CCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcC
Q 013871 48 TKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACG 126 (434)
Q Consensus 48 ~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~ 126 (434)
|...+.+++|+|++.+|++++ |++|+|||............|...|.+++|+|+ +..++. ++.++.|++|++.
T Consensus 107 h~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~-~~~l~s-----gs~D~~i~iwd~~ 180 (410)
T 1vyh_C 107 HRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHS-GKLLAS-----CSADMTIKLWDFQ 180 (410)
T ss_dssp CSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTT-SSEEEE-----EETTSCCCEEETT
T ss_pred cCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCC-CCEEEE-----EeCCCeEEEEeCC
Confidence 346778999999999999985 679999999886655556667788999999998 455553 3566789999998
Q ss_pred CCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcC
Q 013871 127 KDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYS 206 (434)
Q Consensus 127 ~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspd 206 (434)
. ...+.....|...+..+.|+|+|+.|+.. ..|.+.+.| ++........-..+...|..+.|+|+
T Consensus 181 ~---~~~~~~~~~h~~~V~~v~~~p~~~~l~s~---s~D~~i~~w---------d~~~~~~~~~~~~h~~~v~~~~~~~~ 245 (410)
T 1vyh_C 181 G---FECIRTMHGHDHNVSSVSIMPNGDHIVSA---SRDKTIKMW---------EVQTGYCVKTFTGHREWVRMVRPNQD 245 (410)
T ss_dssp S---SCEEECCCCCSSCEEEEEECSSSSEEEEE---ETTSEEEEE---------ETTTCCEEEEEECCSSCEEEEEECTT
T ss_pred C---CceeEEEcCCCCCEEEEEEeCCCCEEEEE---eCCCeEEEE---------ECCCCcEEEEEeCCCccEEEEEECCC
Confidence 7 67778888888899999999999986543 245444433 32222111111234678999999999
Q ss_pred CCEEEEEEccCCCeEEEEecccc-eeEEe--CCcCeeEEEECCC--------------------CCeEEEEecCCCCCeE
Q 013871 207 GSEFAVVYGFMPASATIFNKKCR-PILEL--GSGPYNTVRWNPK--------------------GKFLCLAGFGNLPGDM 263 (434)
Q Consensus 207 g~~~av~~g~~~~~v~l~d~~~~-~~~~~--~~~~~~~i~~SP~--------------------g~~l~~~~~~~~~g~i 263 (434)
|..|+ ++..|+.|++||++.. ....+ |...+++++|+|+ |.+|++++ .+|.|
T Consensus 246 g~~l~--s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs---~D~~i 320 (410)
T 1vyh_C 246 GTLIA--SCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGS---RDKTI 320 (410)
T ss_dssp SSEEE--EEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEE---TTSEE
T ss_pred CCEEE--EEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEe---CCCeE
Confidence 99888 5778999999999643 33444 7889999999997 67899998 56799
Q ss_pred EEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec-Cceeeee--ecccceeeEEEcCCCC
Q 013871 264 AFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLFFKK--MFDKLFQAEWKPVSPD 338 (434)
Q Consensus 264 ~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~-g~~~~~~--~~~~~~~~~w~p~~~~ 338 (434)
++||+.+++++..+.+| .+..++|+|+|++|++++. |+.|+|||+. ++++... +...+..+.|+|..+.
T Consensus 321 ~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~------D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 394 (410)
T 1vyh_C 321 KMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCAD------DKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPY 394 (410)
T ss_dssp EEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEET------TTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSC
T ss_pred EEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeC------CCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCE
Confidence 99999999999988877 4567999999999999999 9999999995 4444443 4567999999999887
Q ss_pred CCCC
Q 013871 339 KFGD 342 (434)
Q Consensus 339 ~~~~ 342 (434)
+++.
T Consensus 395 l~sg 398 (410)
T 1vyh_C 395 VVTG 398 (410)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7765
No 43
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.5e-26 Score=215.71 Aligned_cols=267 Identities=10% Similarity=0.080 Sum_probs=203.6
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF 80 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~ 80 (434)
|++++| |+|++|++++ .|+.|+|||+.+++.+..+..+. ..+.+++|+||+++++++. ++.|++|++...
T Consensus 21 v~~~~~-~~~~~l~s~~-----~dg~v~vw~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~ 91 (313)
T 3odt_A 21 VRDVVA-VDDSKVASVS-----RDGTVRLWSKDDQWLGTVVYTGQ---GFLNSVCYDSEKELLLFGGKDTMINGVPLFAT 91 (313)
T ss_dssp EEEEEE-EETTEEEEEE-----TTSEEEEEEESSSEEEEEEEECS---SCEEEEEEETTTTEEEEEETTSCEEEEETTCC
T ss_pred cEEEEe-cCCCEEEEEE-----cCCcEEEEECCCCEEEEEeecCC---ccEEEEEECCCCCEEEEecCCCeEEEEEeeec
Confidence 789999 9999999999 89999999999998887777653 6777999999999999884 679999998764
Q ss_pred CC---ceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECC-CCCeE
Q 013871 81 PK---GILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNR-GSTGL 156 (434)
Q Consensus 81 ~~---~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~-~G~~l 156 (434)
.. ......+...|.++.|. +..+++ .+.++.|++|+ . ...+.....+...+..+.|++ +++.+
T Consensus 92 ~~~~~~~~~~~~~~~i~~~~~~---~~~l~~-----~~~d~~i~~~d--~---~~~~~~~~~~~~~v~~~~~~~~~~~~l 158 (313)
T 3odt_A 92 SGEDPLYTLIGHQGNVCSLSFQ---DGVVIS-----GSWDKTAKVWK--E---GSLVYNLQAHNASVWDAKVVSFSENKF 158 (313)
T ss_dssp TTSCC-CEECCCSSCEEEEEEE---TTEEEE-----EETTSEEEEEE--T---TEEEEEEECCSSCEEEEEEEETTTTEE
T ss_pred CCCCcccchhhcccCEEEEEec---CCEEEE-----EeCCCCEEEEc--C---CcEEEecccCCCceeEEEEccCCCCEE
Confidence 32 12233455678888884 334443 24567899999 3 677777888888899999988 77776
Q ss_pred EEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-cceeEEe-
Q 013871 157 LAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL- 234 (434)
Q Consensus 157 ~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~-~~~~~~~- 234 (434)
++.. .|.....| + .+.....+...+...|.+++|+|++. |+ ++..++.+.+||++ .+.+..+
T Consensus 159 ~~~~---~d~~i~i~---------d-~~~~~~~~~~~~~~~i~~~~~~~~~~-~~--~~~~dg~i~i~d~~~~~~~~~~~ 222 (313)
T 3odt_A 159 LTAS---ADKTIKLW---------Q-NDKVIKTFSGIHNDVVRHLAVVDDGH-FI--SCSNDGLIKLVDMHTGDVLRTYE 222 (313)
T ss_dssp EEEE---TTSCEEEE---------E-TTEEEEEECSSCSSCEEEEEEEETTE-EE--EEETTSEEEEEETTTCCEEEEEE
T ss_pred EEEE---CCCCEEEE---------e-cCceEEEEeccCcccEEEEEEcCCCe-EE--EccCCCeEEEEECCchhhhhhhh
Confidence 5432 33333332 2 12212222333578999999999997 54 57789999999996 4455554
Q ss_pred -CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEE
Q 013871 235 -GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKI 311 (434)
Q Consensus 235 -~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~i 311 (434)
|...+++++|+|+| .|++++ .+|.|++||+.+++.+..+..+ .+..++|+|+|+ +++++. |+.|+|
T Consensus 223 ~~~~~i~~~~~~~~~-~l~~~~---~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~------dg~i~i 291 (313)
T 3odt_A 223 GHESFVYCIKLLPNG-DIVSCG---EDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSS------DNLVRI 291 (313)
T ss_dssp CCSSCEEEEEECTTS-CEEEEE---TTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEET------TSCEEE
T ss_pred cCCceEEEEEEecCC-CEEEEe---cCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeC------CCcEEE
Confidence 78899999999999 577777 5679999999999888888776 566799999999 567888 999999
Q ss_pred EeecCc
Q 013871 312 FHHNGS 317 (434)
Q Consensus 312 w~~~g~ 317 (434)
|++...
T Consensus 292 w~~~~~ 297 (313)
T 3odt_A 292 FSQEKS 297 (313)
T ss_dssp EESCGG
T ss_pred EeCCCC
Confidence 999654
No 44
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.96 E-value=3.3e-27 Score=227.50 Aligned_cols=274 Identities=13% Similarity=0.093 Sum_probs=199.3
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCc--EEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCC
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGE--AVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTT 78 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~--~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~ 78 (434)
|++++|||+|++|++++ .|+.|+|||+.+++ .+..+..+. ..+.+++|+||+++|+++. ++.|++|++.
T Consensus 11 i~~~~~s~~~~~l~~~~-----~d~~v~i~~~~~~~~~~~~~~~~h~---~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 82 (372)
T 1k8k_C 11 ISCHAWNKDRTQIAICP-----NNHEVHIYEKSGNKWVQVHELKEHN---GQVTGVDWAPDSNRIVTCGTDRNAYVWTLK 82 (372)
T ss_dssp CCEEEECTTSSEEEEEC-----SSSEEEEEEEETTEEEEEEEEECCS---SCEEEEEEETTTTEEEEEETTSCEEEEEEE
T ss_pred eEEEEECCCCCEEEEEe-----CCCEEEEEeCCCCcEEeeeeecCCC---CcccEEEEeCCCCEEEEEcCCCeEEEEECC
Confidence 78999999999999988 78999999999987 777776543 6777999999999999885 6799999987
Q ss_pred CCCCceee--eeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCc---eee-eeecccceeEEEECCC
Q 013871 79 DFPKGILY--RLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQP---LAR-RSFFRCSTVQLNWNRG 152 (434)
Q Consensus 79 ~~~~~~~~--~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~---i~~-~~~~~~~~~~~~ws~~ 152 (434)
........ ..+...|.++.|+|+ +..+++. +..+.|++|++.. ... ... ...+...+..+.|+|+
T Consensus 83 ~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~-----~~d~~v~i~d~~~---~~~~~~~~~~~~~~~~~i~~~~~~~~ 153 (372)
T 1k8k_C 83 GRTWKPTLVILRINRAARCVRWAPN-EKKFAVG-----SGSRVISICYFEQ---ENDWWVCKHIKKPIRSTVLSLDWHPN 153 (372)
T ss_dssp TTEEEEEEECCCCSSCEEEEEECTT-SSEEEEE-----ETTSSEEEEEEET---TTTEEEEEEECTTCCSCEEEEEECTT
T ss_pred CCeeeeeEEeecCCCceeEEEECCC-CCEEEEE-----eCCCEEEEEEecC---CCcceeeeeeecccCCCeeEEEEcCC
Confidence 64321222 224457999999998 4555543 3457899999977 332 122 2335678899999999
Q ss_pred CCeEEEEEEecccccCceeecceeEEEEe----------------eCCcceeeeec-CCCCCeEEEEECcCCCEEEEEEc
Q 013871 153 STGLLAVAQSDVDKTNQSYYGESKLNYLT----------------TDGTHEGLVPL-RKEGPVHDVQWSYSGSEFAVVYG 215 (434)
Q Consensus 153 G~~l~~~~~~~~d~~~~~~~g~~~l~~l~----------------~~~~~~~~v~l-~~~~~i~~v~wspdg~~~av~~g 215 (434)
|..+++.. .|...+ +|.+. .... .....+ .+.+.|.+++|+|+++.|+ ++
T Consensus 154 ~~~l~~~~---~dg~i~-------~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~--~~ 220 (372)
T 1k8k_C 154 SVLLAAGS---CDFKCR-------IFSAYIKEVEERPAPTPWGSKMPFG-ELMFESSSSCGWVHGVCFSANGSRVA--WV 220 (372)
T ss_dssp SSEEEEEE---TTSCEE-------EEECCCTTTSCCCCCBTTBSCCCTT-CEEEECCCCSSCEEEEEECSSSSEEE--EE
T ss_pred CCEEEEEc---CCCCEE-------EEEcccccccccccccccccccchh-hheEecCCCCCeEEEEEECCCCCEEE--EE
Confidence 99765532 333332 23321 0111 222223 3578999999999999888 46
Q ss_pred cCCCeEEEEecc-cceeEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccC--CEE--E--------------
Q 013871 216 FMPASATIFNKK-CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD--GKQ--L-------------- 274 (434)
Q Consensus 216 ~~~~~v~l~d~~-~~~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~--~~~--i-------------- 274 (434)
..++.|.+||++ ...+..+ +..++++++|+|+|++|+++ .+|.|++||+.+ ++. +
T Consensus 221 ~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~----~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (372)
T 1k8k_C 221 SHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG----HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGL 296 (372)
T ss_dssp ETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE----TTSSCEEEEEETTTTEEEECCCCCCC--------
T ss_pred eCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE----eCCeEEEEEccCcCceEEEeeccCccccchhhhc
Confidence 788999999996 4455554 67789999999999988866 346999999987 421 1
Q ss_pred ----------------------EEe-eCC--CceEEEEC-CCC---CEEEEEEcCCceeeCCcEEEEeec
Q 013871 275 ----------------------GTT-RAE--CSVTSEWS-PDG---RYFMTATTAPRLQIDNGIKIFHHN 315 (434)
Q Consensus 275 ----------------------~~~-~~~--~~~~~~ws-pdg---~~l~tas~~prl~~D~~i~iw~~~ 315 (434)
..+ .+| .+..++|+ ++| .+|++++. |+.|+||++.
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~------Dg~i~~W~~~ 360 (372)
T 1k8k_C 297 TARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGM------DGGMSIWDVR 360 (372)
T ss_dssp CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEET------TSEEEEEEHH
T ss_pred chhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecC------CCceEEEEec
Confidence 112 234 56668866 777 99999999 9999999984
No 45
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=99.96 E-value=3.7e-27 Score=226.44 Aligned_cols=276 Identities=12% Similarity=0.133 Sum_probs=187.2
Q ss_pred cEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCC---------CC--CceeeeeecCCeeE
Q 013871 27 NVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTD---------FP--KGILYRLRVPGVAA 95 (434)
Q Consensus 27 ~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~---------~~--~~~~~~~~~~~v~~ 95 (434)
..+.|++...... . +...+.+++|||||++|++++++++++||... .. .......+..+|.+
T Consensus 15 ~~r~w~~~~~~~~----~---~~~~v~~~~fs~dG~~l~~~sd~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 87 (344)
T 4gqb_B 15 AAREWNLPPNAPA----C---MERQLEAARYRSDGALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVAD 87 (344)
T ss_dssp --------CCSCS----S---CCSEEEEEEECTTSCEEEEEECCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEE
T ss_pred cccccCCCCCCcc----c---ccCCEEEEEECCCCCEEEEEeCCceEEeeceeeeeccccccCCcceeeeeeccCCCEEE
Confidence 4567876544321 1 11345689999999999999887877776311 00 00111223457999
Q ss_pred EEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeee----eecccceeEEEECCCCCeEEEEEEecccccCcee
Q 013871 96 FEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARR----SFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSY 171 (434)
Q Consensus 96 ~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~----~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~ 171 (434)
++|+|+ +. +++ .+.++.|+||++.+ ++.+... ..|...+.++.|+|+|+.|+.. ..|.+.+.|
T Consensus 88 ~~~s~d-~~-l~~-----~s~dg~v~lWd~~~---~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sg---s~d~~i~iw 154 (344)
T 4gqb_B 88 LTWVGE-RG-ILV-----ASDSGAVELWELDE---NETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSG---SKDICIKVW 154 (344)
T ss_dssp EEEETT-TE-EEE-----EETTSEEEEEEECT---TSSCEEEEEEEECCSSCEEEEEECTTSSEEEEE---ETTSCEEEE
T ss_pred EEEeCC-Ce-EEE-----EECCCEEEEEeccC---CCceeEeeccccCCCCCEEEEEECCCCCEEEEE---eCCCeEEEE
Confidence 999997 33 332 24567999999987 4444332 3567788999999999986543 245554433
Q ss_pred ecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-ceeEEe----CCcCeeEEEECC
Q 013871 172 YGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL----GSGPYNTVRWNP 246 (434)
Q Consensus 172 ~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~-~~~~~~----~~~~~~~i~~SP 246 (434)
++...........+.+.|.+++|+|++..+++ ++..|+.|++||++. +.+..+ +...+++++|+|
T Consensus 155 ---------d~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~-s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p 224 (344)
T 4gqb_B 155 ---------DLAQQVVLSSYRAHAAQVTCVAASPHKDSVFL-SCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHP 224 (344)
T ss_dssp ---------ETTTTEEEEEECCCSSCEEEEEECSSCTTEEE-EEETTSCEEEEETTSSSCEEECC----CCCEEEEEECS
T ss_pred ---------ECCCCcEEEEEcCcCCceEEEEecCCCCCcee-eeccccccccccccccceeeeeecceeeccceeeeecC
Confidence 33333222222235789999999999875443 578899999999964 444444 355688999999
Q ss_pred CC-CeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCC-CEEEEEEcCCceeeCCcEEEEeecCceeee-
Q 013871 247 KG-KFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDG-RYFMTATTAPRLQIDNGIKIFHHNGSLFFK- 321 (434)
Q Consensus 247 ~g-~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg-~~l~tas~~prl~~D~~i~iw~~~g~~~~~- 321 (434)
++ ++|++|+ .+|.|+|||+++++++..+.+| .+..++|+||| ++|++++. |+.|+|||.....+..
T Consensus 225 ~~~~~l~sg~---~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~------D~~i~vwd~~~~~~~~~ 295 (344)
T 4gqb_B 225 QQSEVFVFGD---ENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSE------DCSLAVLDSSLSELFRS 295 (344)
T ss_dssp SCTTEEEEEE---TTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEET------TSCEEEECTTCCEEEEE
T ss_pred CCCcceEEec---cCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeC------CCeEEEEECCCCcEEEE
Confidence 65 5777777 5679999999999998888877 56679999998 57889998 9999999997654443
Q ss_pred -eecccceeeEEEcCCCCCCC
Q 013871 322 -KMFDKLFQAEWKPVSPDKFG 341 (434)
Q Consensus 322 -~~~~~~~~~~w~p~~~~~~~ 341 (434)
.+.+.+..++|+|++..++.
T Consensus 296 ~~H~~~V~~v~~sp~~~~lla 316 (344)
T 4gqb_B 296 QAHRDFVRDATWSPLNHSLLT 316 (344)
T ss_dssp CCCSSCEEEEEECSSSTTEEE
T ss_pred cCCCCCEEEEEEeCCCCeEEE
Confidence 35578999999999988764
No 46
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.96 E-value=2.7e-27 Score=227.25 Aligned_cols=276 Identities=10% Similarity=0.091 Sum_probs=199.6
Q ss_pred cceEEecCC---C-cEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecC--cCCCCCCeeeecCC----CcEEEEe-cCC
Q 013871 2 LLLLTCLRV---G-LIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKN--MTKTTWPSIRFSSD----EAVACRM-ATN 70 (434)
Q Consensus 2 V~~l~fSP~---g-~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~--~~~~~~~~~~~S~d----~~~la~~-~~~ 70 (434)
|++|+|||+ + .++++.. .++.|+|||+.+++.+..+.... .+...+.+++|+|+ +.+|+++ .++
T Consensus 21 v~~i~~~p~~~~~~~~~~~~~-----~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg 95 (366)
T 3k26_A 21 LFGVQFNWHSKEGDPLVFATV-----GSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRG 95 (366)
T ss_dssp EEEEEECTTCCTTSCEEEEEE-----ETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTC
T ss_pred eEEEEEecccCCCCceEEEEC-----CCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCC
Confidence 789999994 3 3344444 35699999999888776665432 13356779999999 6688887 567
Q ss_pred eEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeee---eecccceeEE
Q 013871 71 EIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARR---SFFRCSTVQL 147 (434)
Q Consensus 71 ~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~---~~~~~~~~~~ 147 (434)
.|++|++...........+...|.++.|+|..+..+++. +.++.|++|++.. ++.+... ..+...+..+
T Consensus 96 ~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~-----~~dg~i~iwd~~~---~~~~~~~~~~~~~~~~v~~~ 167 (366)
T 3k26_A 96 IIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSV-----SKDHALRLWNIQT---DTLVAIFGGVEGHRDEVLSA 167 (366)
T ss_dssp EEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEE-----ETTSCEEEEETTT---TEEEEEECSTTSCSSCEEEE
T ss_pred EEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEE-----eCCCeEEEEEeec---CeEEEEecccccccCceeEE
Confidence 999999987654444444667899999999435666542 4467899999987 6666665 5678889999
Q ss_pred EECCCCCeEEEEEEecccccCceeecceeEEEEeeCCccee----------------------------eeecCCCCCeE
Q 013871 148 NWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEG----------------------------LVPLRKEGPVH 199 (434)
Q Consensus 148 ~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~----------------------------~v~l~~~~~i~ 199 (434)
.|+|+|..|+... .|.... .+++...... .....+...|.
T Consensus 168 ~~~~~~~~l~~~~---~dg~i~---------i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 235 (366)
T 3k26_A 168 DYDLLGEKIMSCG---MDHSLK---------LWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVD 235 (366)
T ss_dssp EECTTSSEEEEEE---TTSCEE---------EEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCC
T ss_pred EECCCCCEEEEec---CCCCEE---------EEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEE
Confidence 9999999875532 333333 2222221100 00011578899
Q ss_pred EEEECcCCCEEEEEEccCCCeEEEEecccc---------------eeEEe--CCcCeeEEEECCC--CCeEEEEecCCCC
Q 013871 200 DVQWSYSGSEFAVVYGFMPASATIFNKKCR---------------PILEL--GSGPYNTVRWNPK--GKFLCLAGFGNLP 260 (434)
Q Consensus 200 ~v~wspdg~~~av~~g~~~~~v~l~d~~~~---------------~~~~~--~~~~~~~i~~SP~--g~~l~~~~~~~~~ 260 (434)
+++|+ ++.++ ++..++.|.+||++.. .+..+ +...+++++|+|+ |++|++++ .+
T Consensus 236 ~~~~~--~~~l~--~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~---~d 308 (366)
T 3k26_A 236 CVRWL--GDLIL--SKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGN---QV 308 (366)
T ss_dssp EEEEE--TTEEE--EECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEEC---TT
T ss_pred EEEEc--CCEEE--EEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEe---cC
Confidence 99998 66666 5778999999998532 13333 6788999999999 99999998 56
Q ss_pred CeEEEEEccCCE----EEEEeeCC----CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec
Q 013871 261 GDMAFWDYVDGK----QLGTTRAE----CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN 315 (434)
Q Consensus 261 g~i~iwd~~~~~----~i~~~~~~----~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~ 315 (434)
|.|++||+.+++ .+..+..+ .+..++|+|||++|++++. |+.|+|||+.
T Consensus 309 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~------dg~i~iwd~~ 365 (366)
T 3k26_A 309 GKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCD------DASIWRWDRL 365 (366)
T ss_dssp SCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEET------TSEEEEEEC-
T ss_pred CcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeC------CCEEEEEEec
Confidence 799999999864 44455543 5667999999999999999 9999999974
No 47
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.96 E-value=9.6e-26 Score=217.37 Aligned_cols=274 Identities=12% Similarity=0.143 Sum_probs=204.9
Q ss_pred cEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCC
Q 013871 37 EAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKG 115 (434)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~ 115 (434)
+..+.+..+. ..+.+++|+||+++|++++ |++|+|||............+...|..++|+|+ +..+++ ++
T Consensus 55 ~~~~~l~gH~---~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~-g~~las-----g~ 125 (354)
T 2pbi_B 55 KTRRTLKGHG---NKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPS-GCAIAC-----GG 125 (354)
T ss_dssp CEEEEEECCS---SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTT-SSEEEE-----ES
T ss_pred EEEEEecCCC---CeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCC-CCEEEE-----ee
Confidence 3456666543 6777999999999999985 679999998776554445556667999999999 555553 46
Q ss_pred CCceEEEEEcCCCC---CCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeec
Q 013871 116 SPASVQIYACGKDL---QSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL 192 (434)
Q Consensus 116 ~~~~v~i~~~~~~~---~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l 192 (434)
.++.+++|++.... ..........|...+..+.|+|++..|+.. ..|.+.+.| ++........-.
T Consensus 126 ~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~---s~D~~v~lw---------d~~~~~~~~~~~ 193 (354)
T 2pbi_B 126 LDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTA---SGDGTCALW---------DVESGQLLQSFH 193 (354)
T ss_dssp TTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEE---ETTSEEEEE---------ETTTCCEEEEEE
T ss_pred CCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEE---eCCCcEEEE---------eCCCCeEEEEEc
Confidence 67899999986421 023345566788888999999999986543 244444433 332221111112
Q ss_pred CCCCCeEEEEECc--CCCEEEEEEccCCCeEEEEeccc-ceeEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEE
Q 013871 193 RKEGPVHDVQWSY--SGSEFAVVYGFMPASATIFNKKC-RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWD 267 (434)
Q Consensus 193 ~~~~~i~~v~wsp--dg~~~av~~g~~~~~v~l~d~~~-~~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd 267 (434)
.+...|.+++|+| +|+.|+ +|..|+.|++||++. ..+..+ |...+++++|+|+|++|++++ .+|.|++||
T Consensus 194 ~h~~~v~~~~~~~~~~g~~l~--sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s---~D~~v~lwd 268 (354)
T 2pbi_B 194 GHGADVLCLDLAPSETGNTFV--SGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGS---DDATCRLYD 268 (354)
T ss_dssp CCSSCEEEEEECCCSSCCEEE--EEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE---TTSCEEEEE
T ss_pred CCCCCeEEEEEEeCCCCCEEE--EEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEe---CCCeEEEEE
Confidence 3567899999988 466777 688899999999964 444444 788999999999999999999 567999999
Q ss_pred ccCCEEEEEeeCC----CceEEEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceeeee--ecccceeeEEEcCCCCCC
Q 013871 268 YVDGKQLGTTRAE----CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKK--MFDKLFQAEWKPVSPDKF 340 (434)
Q Consensus 268 ~~~~~~i~~~~~~----~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~-~g~~~~~~--~~~~~~~~~w~p~~~~~~ 340 (434)
+.+.+.+..+..+ .+..++|+|+|++|++++. |+.|+|||+ +|..+... +...+..++|+|++..++
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~------d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~ 342 (354)
T 2pbi_B 269 LRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYN------DYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFC 342 (354)
T ss_dssp TTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEET------TSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEE
T ss_pred CCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEEC------CCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEE
Confidence 9998877776543 4567999999999999999 999999998 56655443 557899999999988777
Q ss_pred CC
Q 013871 341 GD 342 (434)
Q Consensus 341 ~~ 342 (434)
+.
T Consensus 343 sg 344 (354)
T 2pbi_B 343 SG 344 (354)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 48
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.96 E-value=4e-27 Score=229.23 Aligned_cols=290 Identities=12% Similarity=0.154 Sum_probs=213.6
Q ss_pred CcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCC
Q 013871 26 KNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGS 104 (434)
Q Consensus 26 ~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 104 (434)
..+.+|+..+..+.+++.++. ..+.+++|+||+++|++++ |++|+|||............+...|.+++|+|+ +.
T Consensus 46 ~~~~~~~~~~~~~~~~l~gH~---~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~-g~ 121 (380)
T 3iz6_a 46 RTAVSFNPTDLVCCRTLQGHS---GKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPN-GQ 121 (380)
T ss_dssp GGCCCCCCCCCEEEEEECCCS---SCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTT-SS
T ss_pred ccccccccceeEEeecccccc---cEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCC-CC
Confidence 445667777777888887654 6778999999999999985 679999999876554555667778999999999 56
Q ss_pred eEEEEecCCCCCCceEEEEEcCCCC----CCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeeccee--EE
Q 013871 105 HVAVFVPESKGSPASVQIYACGKDL----QSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESK--LN 178 (434)
Q Consensus 105 ~ia~~~~~~~~~~~~v~i~~~~~~~----~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~--l~ 178 (434)
.+++ ++.++.+++|++.... ..........|...+..+.|+|++...++. ...|.+.+.|.-... +.
T Consensus 122 ~las-----~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s--~s~D~~i~~wd~~~~~~~~ 194 (380)
T 3iz6_a 122 SVAC-----GGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLIT--GSGDQTCVLWDVTTGQRIS 194 (380)
T ss_dssp EEEE-----CCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEE--ECTTSCEEEECTTTCCEEE
T ss_pred EEEE-----eeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEE--ECCCCcEEEEEcCCCcEEE
Confidence 6653 5678899999986421 012334456677778888999986654333 335555554432111 00
Q ss_pred EEeeCCcceeeeecCCCCCeEEEEECc-CCCEEEEEEccCCCeEEEEecc--cceeEEe--CCcCeeEEEECCCCCeEEE
Q 013871 179 YLTTDGTHEGLVPLRKEGPVHDVQWSY-SGSEFAVVYGFMPASATIFNKK--CRPILEL--GSGPYNTVRWNPKGKFLCL 253 (434)
Q Consensus 179 ~l~~~~~~~~~v~l~~~~~i~~v~wsp-dg~~~av~~g~~~~~v~l~d~~--~~~~~~~--~~~~~~~i~~SP~g~~l~~ 253 (434)
.+ + ...+..+...|.+++|+| ++..|+ +|..|+.|++||++ ...+..+ |.+.+++++|+|+|++|++
T Consensus 195 ~~---~---~~~~~~h~~~v~~~~~~~~~~~~l~--sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s 266 (380)
T 3iz6_a 195 IF---G---SEFPSGHTADVLSLSINSLNANMFI--SGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGT 266 (380)
T ss_dssp EE---C---CCSSSSCCSCEEEEEECSSSCCEEE--EEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEE
T ss_pred Ee---e---cccCCCCccCeEEEEeecCCCCEEE--EEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEE
Confidence 00 0 001123567899999987 677777 68889999999986 2444444 7889999999999999999
Q ss_pred EecCCCCCeEEEEEccCCEEEEEeeCC---------CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec-Cceeeee-
Q 013871 254 AGFGNLPGDMAFWDYVDGKQLGTTRAE---------CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLFFKK- 322 (434)
Q Consensus 254 ~~~~~~~g~i~iwd~~~~~~i~~~~~~---------~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~-g~~~~~~- 322 (434)
++ .||.|+|||+.+++.+..+..+ .+..++|+|+|++|++++. |+.|+|||.. ++.+...
T Consensus 267 ~s---~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~------dg~i~vwd~~~~~~~~~~~ 337 (380)
T 3iz6_a 267 GS---DDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYS------NGDCYVWDTLLAEMVLNLG 337 (380)
T ss_dssp EC---SSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECT------TSCEEEEETTTCCEEEEEC
T ss_pred Ec---CCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEEC------CCCEEEEECCCCceEEEEe
Confidence 98 6679999999999888877543 2567999999999999999 9999999984 4444332
Q ss_pred -----ecccceeeEEEcCCCCCCCCc
Q 013871 323 -----MFDKLFQAEWKPVSPDKFGDI 343 (434)
Q Consensus 323 -----~~~~~~~~~w~p~~~~~~~~~ 343 (434)
+...+.++.|+|++..+++..
T Consensus 338 ~~~~~h~~~v~~l~~s~dg~~l~sgs 363 (380)
T 3iz6_a 338 TLQNSHEGRISCLGLSSDGSALCTGS 363 (380)
T ss_dssp CSCSSCCCCCCEEEECSSSSEEEEEC
T ss_pred cccCCCCCceEEEEECCCCCEEEEee
Confidence 456799999999998877753
No 49
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=9e-27 Score=250.57 Aligned_cols=311 Identities=11% Similarity=0.095 Sum_probs=204.7
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF 80 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~ 80 (434)
|++|+||| |++|++++ .|+.|+|||+.+++++..+... ..+.+++|+||+++|+++. +++|++||+...
T Consensus 61 V~~l~fsp-g~~L~S~s-----~D~~v~lWd~~~~~~~~~~~~~----~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~ 130 (902)
T 2oaj_A 61 IKEMRFVK-GIYLVVIN-----AKDTVYVLSLYSQKVLTTVFVP----GKITSIDTDASLDWMLIGLQNGSMIVYDIDRD 130 (902)
T ss_dssp EEEEEEET-TTEEEEEE-----TTCEEEEEETTTCSEEEEEECS----SCEEEEECCTTCSEEEEEETTSCEEEEETTTT
T ss_pred EEEEEEcC-CCEEEEEE-----CcCeEEEEECCCCcEEEEEcCC----CCEEEEEECCCCCEEEEEcCCCcEEEEECCCC
Confidence 78999999 99999999 8999999999999999888633 5567999999999999984 689999998764
Q ss_pred CCce-----------eeeeecCCeeEEEEeCCC-----------------------------------------------
Q 013871 81 PKGI-----------LYRLRVPGVAAFEVSKAP----------------------------------------------- 102 (434)
Q Consensus 81 ~~~~-----------~~~~~~~~v~~~~~sp~~----------------------------------------------- 102 (434)
.... ....|...|.+++|+|++
T Consensus 131 ~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~vlWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h 210 (902)
T 2oaj_A 131 QLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTLTYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKR 210 (902)
T ss_dssp EEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEEEEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCB
T ss_pred ccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcEEEECCCCceEEEEecccCCcCCCccccccccccc
Confidence 3210 001122345555555531
Q ss_pred ------------CCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeee------------------cccceeEEEEC--
Q 013871 103 ------------GSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSF------------------FRCSTVQLNWN-- 150 (434)
Q Consensus 103 ------------~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~------------------~~~~~~~~~ws-- 150 (434)
+.+++. .+.++.|++|++.+ ++.+..+++ +...+..+.|+
T Consensus 211 ~~~V~~v~fspdg~~las-----gs~Dg~i~lWd~~~---g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~ 282 (902)
T 2oaj_A 211 TPKVIQSLYHPNSLHIIT-----IHEDNSLVFWDANS---GHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCE 282 (902)
T ss_dssp CCCEEEEEECTTSSEEEE-----EETTCCEEEEETTT---CCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEEC
T ss_pred CCCeEEEEEcCCCCEEEE-----EECCCeEEEEECCC---CcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEec
Confidence 222221 24567899999977 555543322 13357789994
Q ss_pred --CCCCeEEEEEEeccc---ccCceee-c---------------------------------------------------
Q 013871 151 --RGSTGLLAVAQSDVD---KTNQSYY-G--------------------------------------------------- 173 (434)
Q Consensus 151 --~~G~~l~~~~~~~~d---~~~~~~~-g--------------------------------------------------- 173 (434)
|++..+++..+.+.+ .....+. +
T Consensus 283 ~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~ 362 (902)
T 2oaj_A 283 NNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCH 362 (902)
T ss_dssp SSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTB
T ss_pred CCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCC
Confidence 555455444322110 0111110 0
Q ss_pred ----------ceeEEEEeeCCcceeee----------------------------------------ecC-CCCCeEEEE
Q 013871 174 ----------ESKLNYLTTDGTHEGLV----------------------------------------PLR-KEGPVHDVQ 202 (434)
Q Consensus 174 ----------~~~l~~l~~~~~~~~~v----------------------------------------~l~-~~~~i~~v~ 202 (434)
...|+.+++..+..... ++. +...+.+++
T Consensus 363 d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~ 442 (902)
T 2oaj_A 363 NPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKL 442 (902)
T ss_dssp SCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCC
T ss_pred CceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCccc
Confidence 01122332211100000 000 112334456
Q ss_pred ECcCCCEEEEEEccCCCeEEEEeccccee-----EE---------eCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEc
Q 013871 203 WSYSGSEFAVVYGFMPASATIFNKKCRPI-----LE---------LGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDY 268 (434)
Q Consensus 203 wspdg~~~av~~g~~~~~v~l~d~~~~~~-----~~---------~~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~ 268 (434)
|+|+|+.|+ +|..|++|++||+....+ .. -|...+++++|||||++||+|+ .+|+|+|||+
T Consensus 443 ~spdg~~la--Sgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs---~DgtV~lwd~ 517 (902)
T 2oaj_A 443 PAEYGTAFI--TGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSI---ETGDVVLFKY 517 (902)
T ss_dssp CCSEEEEEE--EEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEE---TTSCEEEEEE
T ss_pred ccccCcEEE--EecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEe---cCcEEEEEEe
Confidence 788888887 688899999999864322 11 3567899999999999999999 6679999998
Q ss_pred cCC---------------------------------------------EEEEEeeCC--CceEEEECCCCCEEEEEEcCC
Q 013871 269 VDG---------------------------------------------KQLGTTRAE--CSVTSEWSPDGRYFMTATTAP 301 (434)
Q Consensus 269 ~~~---------------------------------------------~~i~~~~~~--~~~~~~wspdg~~l~tas~~p 301 (434)
.++ +++..+.+| .++.++||||| +|++|+.
T Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~-- 594 (902)
T 2oaj_A 518 EVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYA-- 594 (902)
T ss_dssp EECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEET--
T ss_pred cCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeC--
Confidence 865 235666655 66779999999 9999999
Q ss_pred ceeeCCcEEEEeecCcee-ee--------eecccceeeEEE-----cCC---CCCCCC
Q 013871 302 RLQIDNGIKIFHHNGSLF-FK--------KMFDKLFQAEWK-----PVS---PDKFGD 342 (434)
Q Consensus 302 rl~~D~~i~iw~~~g~~~-~~--------~~~~~~~~~~w~-----p~~---~~~~~~ 342 (434)
|+.|+|||+.+..+ +. .+...++.++|. |++ ..|++.
T Consensus 595 ----D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sg 648 (902)
T 2oaj_A 595 ----AGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCG 648 (902)
T ss_dssp ----TSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEE
T ss_pred ----CCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEE
Confidence 99999999987643 21 233459999999 875 455543
No 50
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.96 E-value=3.5e-26 Score=222.76 Aligned_cols=281 Identities=11% Similarity=0.082 Sum_probs=199.1
Q ss_pred cceEEecC-CCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeec----------CcCCCCCCeeeecC-CCcEEEEec-
Q 013871 2 LLLLTCLR-VGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQK----------NMTKTTWPSIRFSS-DEAVACRMA- 68 (434)
Q Consensus 2 V~~l~fSP-~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~----------~~~~~~~~~~~~S~-d~~~la~~~- 68 (434)
|.+|+||| +|++|++++ .|+.|+|||+.+++....+... ..+...+.+++|+| ++.+|+++.
T Consensus 46 v~~~~~s~~~~~~l~~~~-----~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~ 120 (408)
T 4a11_B 46 INTLDIEPVEGRYMLSGG-----SDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSF 120 (408)
T ss_dssp EEEEEECTTTCCEEEEEE-----TTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEET
T ss_pred EEEEEEecCCCCEEEEEc-----CCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeC
Confidence 78999999 999999999 8999999999988654443311 11446778999999 777888775
Q ss_pred CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCC--CeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeE
Q 013871 69 TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPG--SHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQ 146 (434)
Q Consensus 69 ~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~--~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~ 146 (434)
++.|++|++......... .....+..+.++|.+. ..+++- +..+.|++|++.. +..+.....+...+..
T Consensus 121 d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~v~~~d~~~---~~~~~~~~~~~~~v~~ 191 (408)
T 4a11_B 121 DKTLKVWDTNTLQTADVF-NFEETVYSHHMSPVSTKHCLVAVG-----TRGPKVQLCDLKS---GSCSHILQGHRQEILA 191 (408)
T ss_dssp TSEEEEEETTTTEEEEEE-ECSSCEEEEEECSSCSSCCEEEEE-----ESSSSEEEEESSS---SCCCEEECCCCSCEEE
T ss_pred CCeEEEeeCCCCccceec-cCCCceeeeEeecCCCCCcEEEEE-----cCCCeEEEEeCCC---cceeeeecCCCCcEEE
Confidence 789999999875432222 2345688899998643 244432 3457899999987 6777778888889999
Q ss_pred EEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeee----------------cCCCCCeEEEEECcCCCEE
Q 013871 147 LNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVP----------------LRKEGPVHDVQWSYSGSEF 210 (434)
Q Consensus 147 ~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~----------------l~~~~~i~~v~wspdg~~~ 210 (434)
+.|+|+|.++++.++ .|...+. +++......... ..+.+.|.+++|+|+++.|
T Consensus 192 ~~~~~~~~~ll~~~~--~dg~i~i---------~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 260 (408)
T 4a11_B 192 VSWSPRYDYILATAS--ADSRVKL---------WDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHL 260 (408)
T ss_dssp EEECSSCTTEEEEEE--TTSCEEE---------EETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEE
T ss_pred EEECCCCCcEEEEEc--CCCcEEE---------EECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEE
Confidence 999999997655433 3333332 222211111111 2346889999999999999
Q ss_pred EEEEccCCCeEEEEeccccee-EEe-------CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--
Q 013871 211 AVVYGFMPASATIFNKKCRPI-LEL-------GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-- 280 (434)
Q Consensus 211 av~~g~~~~~v~l~d~~~~~~-~~~-------~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-- 280 (434)
+ ++..++.+.+||++.... ..+ .............+..+++++ .+|.|++||+.+++.+..+.+|
T Consensus 261 ~--~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~v~d~~~~~~~~~~~~~~~ 335 (408)
T 4a11_B 261 L--TVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVP---YGSTIAVYTVYSGEQITMLKGHYK 335 (408)
T ss_dssp E--EEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEE---ETTEEEEEETTTCCEEEEECCCSS
T ss_pred E--EecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEe---cCCEEEEEECcCCcceeeeccCCC
Confidence 8 467789999999964332 211 111222223333345555565 3469999999999999999876
Q ss_pred CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCce
Q 013871 281 CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL 318 (434)
Q Consensus 281 ~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~ 318 (434)
.+..++|+|||++|++++. |+.|+||++....
T Consensus 336 ~v~~~~~s~~~~~l~s~~~------dg~i~iw~~~~~~ 367 (408)
T 4a11_B 336 TVDCCVFQSNFQELYSGSR------DCNILAWVPSLYE 367 (408)
T ss_dssp CEEEEEEETTTTEEEEEET------TSCEEEEEECC--
T ss_pred eEEEEEEcCCCCEEEEECC------CCeEEEEeCCCCC
Confidence 5667999999999999999 9999999996543
No 51
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=99.96 E-value=5.4e-27 Score=226.42 Aligned_cols=292 Identities=11% Similarity=0.098 Sum_probs=179.8
Q ss_pred EEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-------CCeEEEEeC
Q 013871 5 LTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-------TNEIQFFDT 77 (434)
Q Consensus 5 l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-------~~~i~v~~~ 77 (434)
+.+++++.|+.+.+ +.....|++....+ . .|...+.+++|||||++||+++ ++.|++|+.
T Consensus 11 ~d~g~~~~~~~~~g------~~~~~~w~~p~~~p----~---~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~ 77 (357)
T 4g56_B 11 VDLGTENLYFQSNG------SSKGSAWGRPVTAP----A---CMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKD 77 (357)
T ss_dssp ------------------------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESS
T ss_pred CCCCccceEEecCC------CccccccCCCCCCc----c---cccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEEC
Confidence 45666666665433 45678888754332 1 1336677999999999999986 457999987
Q ss_pred CCCCCc----eeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCcee----eeeecccceeEEEE
Q 013871 78 TDFPKG----ILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLA----RRSFFRCSTVQLNW 149 (434)
Q Consensus 78 ~~~~~~----~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~----~~~~~~~~~~~~~w 149 (434)
...... .....+..+|.+++|+|+ +.+++. +.++.|+||++.+ ++.+. ....|...+.++.|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~V~~~~~s~d-~~~l~~------s~dg~v~lWd~~~---~~~~~~~~~~~~~h~~~V~~v~~ 147 (357)
T 4g56_B 78 PEGAPNESLCTAGVQTEAGVTDVAWVSE-KGILVA------SDSGAVELWEILE---KESLLVNKFAKYEHDDIVKTLSV 147 (357)
T ss_dssp CC---CGGGCSEEEECSSCEEEEEEETT-TEEEEE------ETTSCEEEC-----------CCCCEEECCCSSCEEEEEE
T ss_pred CCCCcceeEecccCCCCCCEEEEEEcCC-CCEEEE------ECCCEEEEeeccc---cceeEEEeeccCCCCCCEEEEEE
Confidence 654321 112234567999999998 444432 3457899999977 33322 22346678899999
Q ss_pred CCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeec-CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc
Q 013871 150 NRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL-RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC 228 (434)
Q Consensus 150 s~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l-~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~ 228 (434)
+|+|+.|+.. ..|.+.+.| +.... .....+ .+.+.|.+++|+|++..+++ ++..|+.|++||++.
T Consensus 148 spdg~~l~sg---s~dg~v~iw---------d~~~~-~~~~~~~~h~~~v~~v~~s~~~~~~~~-s~~~dg~v~~wd~~~ 213 (357)
T 4g56_B 148 FSDGTQAVSG---GKDFSVKVW---------DLSQK-AVLKSYNAHSSEVNCVAACPGKDTIFL-SCGEDGRILLWDTRK 213 (357)
T ss_dssp CSSSSEEEEE---ETTSCEEEE---------ETTTT-EEEEEECCCSSCEEEEEECTTCSSCEE-EEETTSCEEECCTTS
T ss_pred CCCCCEEEEE---eCCCeEEEE---------ECCCC-cEEEEEcCCCCCEEEEEEccCCCceee-eeccCCceEEEECCC
Confidence 9999986543 244444433 33332 222222 24789999999999875443 577799999999964
Q ss_pred c-eeEEe----CCcCeeEEEECCCC-CeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCC-CEEEEEEc
Q 013871 229 R-PILEL----GSGPYNTVRWNPKG-KFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDG-RYFMTATT 299 (434)
Q Consensus 229 ~-~~~~~----~~~~~~~i~~SP~g-~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg-~~l~tas~ 299 (434)
. .+..+ +...+++++|+|++ .+|++|+ .++.|++||+.+++.+..+.++ .+..++|+|+| ++|++++.
T Consensus 214 ~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~---~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~ 290 (357)
T 4g56_B 214 PKPATRIDFCASDTIPTSVTWHPEKDDTFACGD---ETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISE 290 (357)
T ss_dssp SSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEE---SSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEET
T ss_pred CceeeeeeeccccccccchhhhhcccceEEEee---cccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeC
Confidence 3 33222 46678999999986 5777777 5579999999999888777766 56679999998 57888998
Q ss_pred CCceeeCCcEEEEeecCce-eee-eecccceeeEEEcC-CCCCCCC
Q 013871 300 APRLQIDNGIKIFHHNGSL-FFK-KMFDKLFQAEWKPV-SPDKFGD 342 (434)
Q Consensus 300 ~prl~~D~~i~iw~~~g~~-~~~-~~~~~~~~~~w~p~-~~~~~~~ 342 (434)
|+.|+|||+.... +.. .+...+..++|+|. +..+++.
T Consensus 291 ------D~~i~iwd~~~~~~~~~~~H~~~V~~vafsP~d~~~l~s~ 330 (357)
T 4g56_B 291 ------DCTVAVLDADFSEVFRDLSHRDFVTGVAWSPLDHSKFTTV 330 (357)
T ss_dssp ------TSCEEEECTTSCEEEEECCCSSCEEEEEECSSSTTEEEEE
T ss_pred ------CCEEEEEECCCCcEeEECCCCCCEEEEEEeCCCCCEEEEE
Confidence 9999999996544 333 25568999999995 4444443
No 52
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.95 E-value=7.9e-27 Score=259.88 Aligned_cols=314 Identities=11% Similarity=0.101 Sum_probs=231.2
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCc----------CCCCCCeeeecCCCcEEEEecCCe
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNM----------TKTTWPSIRFSSDEAVACRMATNE 71 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~----------~~~~~~~~~~S~d~~~la~~~~~~ 71 (434)
|++++|||+|++|++++ .|+.|++||+.+++.+..+..... ....+.++.|+|||++++.+.++.
T Consensus 746 v~~~~~sp~~~~l~s~s-----~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~ 820 (1249)
T 3sfz_A 746 VNHCRFSPDDELLASCS-----ADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNK 820 (1249)
T ss_dssp EEEEEECSSTTEEEEEE-----SSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTE
T ss_pred EEEEEEecCCCEEEEEE-----CCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCc
Confidence 67899999999999999 899999999999988777653221 112566899999999999999999
Q ss_pred EEEEeCCCCCCceeee-eecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEEC
Q 013871 72 IQFFDTTDFPKGILYR-LRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWN 150 (434)
Q Consensus 72 i~v~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws 150 (434)
|.+|+........... .+...|..++|+|+ +..+++ .+..+.|++|++.+ +..+.....|...+..+.|+
T Consensus 821 v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~-----~~~dg~v~vwd~~~---~~~~~~~~~h~~~v~~v~~s 891 (1249)
T 3sfz_A 821 VLLFDIHTSGLLAEIHTGHHSTIQYCDFSPY-DHLAVI-----ALSQYCVELWNIDS---RLKVADCRGHLSWVHGVMFS 891 (1249)
T ss_dssp EEEEETTTCCEEEEEECSSSSCCCEEEECSS-TTEEEE-----ECSSSCEEEEETTT---TEEEEEECCCSSCEEEEEEC
T ss_pred EEEEEecCCCceeEEcCCCCCceEEEEEcCC-CCEEEE-----EeCCCeEEEEEcCC---CceeeecCCCccceEEEEEC
Confidence 9999998765432222 34567999999998 455554 24567899999988 77888888888899999999
Q ss_pred CCCCeEEEEEEecccccCceeecc--------------------------------------------------------
Q 013871 151 RGSTGLLAVAQSDVDKTNQSYYGE-------------------------------------------------------- 174 (434)
Q Consensus 151 ~~G~~l~~~~~~~~d~~~~~~~g~-------------------------------------------------------- 174 (434)
|+|..++... .|...+.|.-.
T Consensus 892 pdg~~l~s~s---~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 968 (1249)
T 3sfz_A 892 PDGSSFLTAS---DDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCC 968 (1249)
T ss_dssp TTSSEEEEEE---TTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEE
T ss_pred CCCCEEEEEe---CCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEE
Confidence 9999865432 34444333210
Q ss_pred --------------eeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccce----------
Q 013871 175 --------------SKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP---------- 230 (434)
Q Consensus 175 --------------~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~---------- 230 (434)
..++.++............+.+.|.+++|+|+|+.++ +++.++.+.+||+....
T Consensus 969 ~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~--s~~~dg~i~vwd~~~~~~~~~~~~~~~ 1046 (1249)
T 3sfz_A 969 LSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLI--SSSEDSVIQVWNWQTGDYVFLQAHQET 1046 (1249)
T ss_dssp ECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEE--EECSSSBEEEEETTTTEEECCBCCSSC
T ss_pred EcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEE--EEcCCCEEEEEECCCCceEEEecCCCc
Confidence 0111222212111111123467889999999999888 46677788888754211
Q ss_pred -------------------------------eE--EeCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEe
Q 013871 231 -------------------------------IL--ELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTT 277 (434)
Q Consensus 231 -------------------------------~~--~~~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~ 277 (434)
+. ..|.+.+.+++|+|+|++|++++ .+|.|++||+.+++.+..+
T Consensus 1047 v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s---~d~~v~iwd~~~~~~~~~l 1123 (1249)
T 3sfz_A 1047 VKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTS---ADKTAKIWSFDLLSPLHEL 1123 (1249)
T ss_dssp EEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEEC---CSSCCCEECSSSSSCSBCC
T ss_pred EEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEc---CCCcEEEEECCCcceeeee
Confidence 11 12566788899999999999988 5679999999988877777
Q ss_pred eCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec-Cceeeee-----------ecccceeeEEEcCCCCCCCCc
Q 013871 278 RAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLFFKK-----------MFDKLFQAEWKPVSPDKFGDI 343 (434)
Q Consensus 278 ~~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~-g~~~~~~-----------~~~~~~~~~w~p~~~~~~~~~ 343 (434)
.+| .+..++|||||++|++++. |+.|+||++. |+.+... +...+..++|+|++..++...
T Consensus 1124 ~~h~~~v~~~~~s~dg~~lat~~~------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~ 1197 (1249)
T 3sfz_A 1124 KGHNGCVRCSAFSLDGILLATGDD------NGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG 1197 (1249)
T ss_dssp CCCSSCEEEEEECSSSSEEEEEET------TSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES
T ss_pred ccCCCcEEEEEECCCCCEEEEEeC------CCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEECC
Confidence 766 5667999999999999999 9999999995 5544332 445689999999998887653
No 53
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=99.95 E-value=3e-26 Score=220.05 Aligned_cols=275 Identities=13% Similarity=0.120 Sum_probs=194.9
Q ss_pred cEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceee---eeecCCeeEEEEeCCCCCeEEEEecC
Q 013871 37 EAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILY---RLRVPGVAAFEVSKAPGSHVAVFVPE 112 (434)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~---~~~~~~v~~~~~sp~~~~~ia~~~~~ 112 (434)
+++.++..+. ...+.+++|+|||++||+++ |++|+||++......... ..|...|.+++|+|+ +.+++.
T Consensus 6 ~~~~~~~~h~--~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~-g~~l~s---- 78 (345)
T 3fm0_A 6 VLLGRVPAHP--DSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPC-GNYLAS---- 78 (345)
T ss_dssp EEEEEECCST--TSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTT-SSEEEE----
T ss_pred EEeeeecCCC--CCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCC-CCEEEE----
Confidence 4556665543 12555899999999999985 679999998764311111 234567999999998 555654
Q ss_pred CCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeee-
Q 013871 113 SKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVP- 191 (434)
Q Consensus 113 ~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~- 191 (434)
.+.++.++||++.... ...+.....|...+..+.|+|+|+.|+.. ..|.+.+ +|.+...........
T Consensus 79 -~s~D~~v~iw~~~~~~-~~~~~~~~~h~~~v~~v~~sp~~~~l~s~---s~D~~v~-------iwd~~~~~~~~~~~~~ 146 (345)
T 3fm0_A 79 -ASFDATTCIWKKNQDD-FECVTTLEGHENEVKSVAWAPSGNLLATC---SRDKSVW-------VWEVDEEDEYECVSVL 146 (345)
T ss_dssp -EETTSCEEEEEECCC--EEEEEEECCCSSCEEEEEECTTSSEEEEE---ETTSCEE-------EEEECTTSCEEEEEEE
T ss_pred -EECCCcEEEEEccCCC-eEEEEEccCCCCCceEEEEeCCCCEEEEE---ECCCeEE-------EEECCCCCCeEEEEEe
Confidence 3456789999987621 23456667788899999999999986543 2444444 333322221122222
Q ss_pred cCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccce---eEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEE
Q 013871 192 LRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP---ILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFW 266 (434)
Q Consensus 192 l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~---~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iw 266 (434)
..+...|.+++|+|+++.|+ ++..|+.|++||.+... ...+ |...+++++|+|+|++|++++ .||.|+||
T Consensus 147 ~~h~~~v~~~~~~p~~~~l~--s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s---~D~~v~iW 221 (345)
T 3fm0_A 147 NSHTQDVKHVVWHPSQELLA--SASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCS---DDRTVRIW 221 (345)
T ss_dssp CCCCSCEEEEEECSSSSCEE--EEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEE---TTSCEEEE
T ss_pred cCcCCCeEEEEECCCCCEEE--EEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEe---CCCeEEEe
Confidence 23578899999999999888 57789999999986542 2333 788999999999999999999 56799999
Q ss_pred EccC---------------CEEEEEeeC-C--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCce---------e
Q 013871 267 DYVD---------------GKQLGTTRA-E--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL---------F 319 (434)
Q Consensus 267 d~~~---------------~~~i~~~~~-~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~---------~ 319 (434)
|... .+++..+.+ | .+..++|+|++..|++++. |+.|+||+..... .
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~------d~~i~vw~~~~~~~~~~~~~~~~ 295 (345)
T 3fm0_A 222 RQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACG------DDAIRVFQEDPNSDPQQPTFSLT 295 (345)
T ss_dssp EEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEET------TSCEEEEEECTTSCTTSCCEEEE
T ss_pred ccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeC------CCeEEEEEeCCCCCcceeeEEEE
Confidence 9632 134444443 3 5667999999999999999 9999999985431 1
Q ss_pred ---eeeecccceeeEEEcCCCCCCC
Q 013871 320 ---FKKMFDKLFQAEWKPVSPDKFG 341 (434)
Q Consensus 320 ---~~~~~~~~~~~~w~p~~~~~~~ 341 (434)
...+...+..++|+|..+.++.
T Consensus 296 ~~~~~~h~~~V~~v~~~p~~~~~la 320 (345)
T 3fm0_A 296 AHLHQAHSQDVNCVAWNPKEPGLLA 320 (345)
T ss_dssp EEETTSSSSCEEEEEECSSSTTEEE
T ss_pred eeecccccCcEeEeEEeCCCceEEE
Confidence 1124567999999999865443
No 54
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.95 E-value=3.6e-26 Score=226.17 Aligned_cols=273 Identities=12% Similarity=0.156 Sum_probs=186.2
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCc-----------EEEEEeecCcC---------CCCCCeeeecCCC
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGE-----------AVYQLFQKNMT---------KTTWPSIRFSSDE 61 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~-----------~~~~~~~~~~~---------~~~~~~~~~S~d~ 61 (434)
|++|+|||+|++|++++ .|+.|+|||+.+++ .+..+..+... ...+.+++|+|++
T Consensus 31 V~~v~~s~~g~~la~g~-----~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 31 ISTVEFNHSGELLATGD-----KGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp EEEEEECSSSSEEEEEE-----TTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred EEEEEECCCCCEEEEEc-----CCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 78999999999999999 89999999998877 45666554200 1557799999998
Q ss_pred --cEEEEe-cCCeEEEEeCCCCCCc----------------------------------------eeeeeecCCeeEEEE
Q 013871 62 --AVACRM-ATNEIQFFDTTDFPKG----------------------------------------ILYRLRVPGVAAFEV 98 (434)
Q Consensus 62 --~~la~~-~~~~i~v~~~~~~~~~----------------------------------------~~~~~~~~~v~~~~~ 98 (434)
.+|+++ .|+.|++|++...... .....|...|.+++|
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 185 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI 185 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence 666666 5789999997542110 001234557999999
Q ss_pred eCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCcee-------eeeecccceeEEEECCCC-CeEEEEEEecccccCce
Q 013871 99 SKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLA-------RRSFFRCSTVQLNWNRGS-TGLLAVAQSDVDKTNQS 170 (434)
Q Consensus 99 sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~-------~~~~~~~~~~~~~ws~~G-~~l~~~~~~~~d~~~~~ 170 (434)
+|+ +..++. + .++.|++|++... ...+. ....+...+..+.|+|+| ..|+.. + .|...+
T Consensus 186 ~~~-~~~l~s-----~-~d~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~-~--~dg~i~- 252 (447)
T 3dw8_B 186 NSD-YETYLS-----A-DDLRINLWHLEIT--DRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYS-S--SKGTIR- 252 (447)
T ss_dssp CTT-SSEEEE-----E-CSSEEEEEETTEE--EEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEE-E--TTSCEE-
T ss_pred cCC-CCEEEE-----e-CCCeEEEEECCCC--CceeeeeecccccccccCcceEEEEECCCCCcEEEEE-e--CCCeEE-
Confidence 998 555553 1 3689999999741 23332 234567788999999999 654432 2 333333
Q ss_pred eecceeEEEEeeCCccee---eeecC-CC------------CCeEEEEECcCCCEEEEEEccCCCeEEEEecc--cceeE
Q 013871 171 YYGESKLNYLTTDGTHEG---LVPLR-KE------------GPVHDVQWSYSGSEFAVVYGFMPASATIFNKK--CRPIL 232 (434)
Q Consensus 171 ~~g~~~l~~l~~~~~~~~---~v~l~-~~------------~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~--~~~~~ 232 (434)
++++...... ...+. +. +.|.+++|+|+|+.|+. +.. +.|++||++ ...+.
T Consensus 253 --------iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~--~~~-~~v~iwd~~~~~~~~~ 321 (447)
T 3dw8_B 253 --------LCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMT--RDY-LSVKVWDLNMENRPVE 321 (447)
T ss_dssp --------EEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEE--EES-SEEEEEETTCCSSCSC
T ss_pred --------EEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEE--eeC-CeEEEEeCCCCccccc
Confidence 3333222110 11111 12 38999999999999884 555 899999996 34444
Q ss_pred Ee--CCcC---------------eeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC----------------
Q 013871 233 EL--GSGP---------------YNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA---------------- 279 (434)
Q Consensus 233 ~~--~~~~---------------~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~---------------- 279 (434)
.+ |... +..++|+|+|++|++++ .+|.|+|||+.+++.+.....
T Consensus 322 ~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s---~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (447)
T 3dw8_B 322 TYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGS---YNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVC 398 (447)
T ss_dssp CEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEEC---STTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEE
T ss_pred eeeccccccccccccccccccccceEEEECCCCCEEEEec---cCCEEEEEEcCCCcceeeeecccccccccccCCcccc
Confidence 44 3221 22399999999999998 567999999999876642211
Q ss_pred ------------------CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEe
Q 013871 280 ------------------ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFH 313 (434)
Q Consensus 280 ------------------~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~ 313 (434)
..+..++|+|+|.+|++++. +.+.||.
T Consensus 399 ~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~-------~~~~~~~ 443 (447)
T 3dw8_B 399 ASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATT-------NNLYIFQ 443 (447)
T ss_dssp CSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECS-------SCEEEEE
T ss_pred ccCCcccccccccccccCCceeEEEECCCCCEEEEEec-------ceeeeec
Confidence 13566999999999999885 4577875
No 55
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.95 E-value=1.5e-25 Score=221.02 Aligned_cols=290 Identities=12% Similarity=0.113 Sum_probs=208.0
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeec--CcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCC
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQK--NMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTT 78 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~--~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~ 78 (434)
+.+++|||++.++++.+ .++.|++||+.+++.+..+... ..+...+.+++|++++++++++. ++.|++||+.
T Consensus 125 ~~~~~~s~~~~~~~~~~-----~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~ 199 (433)
T 3bws_A 125 PKSVRFIDNTRLAIPLL-----EDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLK 199 (433)
T ss_dssp BCCCEESSSSEEEEEBT-----TSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETT
T ss_pred ceEEEEeCCCeEEEEeC-----CCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECC
Confidence 45789999777777766 6788999999999987643321 11334566899999999999885 5899999998
Q ss_pred CCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEE
Q 013871 79 DFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLA 158 (434)
Q Consensus 79 ~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~ 158 (434)
..........+...+..++|+|++ ..+.+. ....+.|.+|++.+ ++.+..... ......+.|+|+|+.|++
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~----~~~~~~i~~~d~~~---~~~~~~~~~-~~~~~~~~~~~~g~~l~~ 270 (433)
T 3bws_A 200 TLAYKATVDLTGKWSKILLYDPIR-DLVYCS----NWISEDISVIDRKT---KLEIRKTDK-IGLPRGLLLSKDGKELYI 270 (433)
T ss_dssp TCCEEEEEECSSSSEEEEEEETTT-TEEEEE----ETTTTEEEEEETTT---TEEEEECCC-CSEEEEEEECTTSSEEEE
T ss_pred CceEEEEEcCCCCCeeEEEEcCCC-CEEEEE----ecCCCcEEEEECCC---CcEEEEecC-CCCceEEEEcCCCCEEEE
Confidence 755333333445678999999984 444322 12456899999976 555554443 335778999999998776
Q ss_pred EEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccc-eeEEe-CC
Q 013871 159 VAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PILEL-GS 236 (434)
Q Consensus 159 ~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~-~~~~~-~~ 236 (434)
...... ... .....|+.++..... ....+...+.+..++|+|+++.+++ ++..++.+.+||++.. .+..+ +.
T Consensus 271 ~~~~~~-~~~---~~dg~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~g~~l~~-~~~~~~~v~v~d~~~~~~~~~~~~~ 344 (433)
T 3bws_A 271 AQFSAS-NQE---SGGGRLGIYSMDKEK-LIDTIGPPGNKRHIVSGNTENKIYV-SDMCCSKIEVYDLKEKKVQKSIPVF 344 (433)
T ss_dssp EEEESC-TTC---SCCEEEEEEETTTTE-EEEEEEEEECEEEEEECSSTTEEEE-EETTTTEEEEEETTTTEEEEEEECS
T ss_pred EECCCC-ccc---cCCCeEEEEECCCCc-EEeeccCCCCcceEEECCCCCEEEE-EecCCCEEEEEECCCCcEEEEecCC
Confidence 542211 000 012245666654432 2222333457889999999988776 4677899999999744 34444 56
Q ss_pred cCeeEEEECCCCCeEEEEecCCC------------CCeEEEEEccCCEEEEEeeCC-CceEEEECCCCCEEEEEEcCCce
Q 013871 237 GPYNTVRWNPKGKFLCLAGFGNL------------PGDMAFWDYVDGKQLGTTRAE-CSVTSEWSPDGRYFMTATTAPRL 303 (434)
Q Consensus 237 ~~~~~i~~SP~g~~l~~~~~~~~------------~g~i~iwd~~~~~~i~~~~~~-~~~~~~wspdg~~l~tas~~prl 303 (434)
..+.+++|+|+|++|++++.++. +|.|++||..+++.+..+..+ .+..++|+|||++|++++..
T Consensus 345 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~--- 421 (433)
T 3bws_A 345 DKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGNQPTGLDVSPDNRYLVISDFL--- 421 (433)
T ss_dssp SSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECSSSEEEEEECTTSCEEEEEETT---
T ss_pred CCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCCCCCceEEEcCCCCEEEEEECC---
Confidence 77899999999999988875432 579999999999988888765 55669999999999988754
Q ss_pred eeCCcEEEEeecC
Q 013871 304 QIDNGIKIFHHNG 316 (434)
Q Consensus 304 ~~D~~i~iw~~~g 316 (434)
|+.|+||++++
T Consensus 422 --d~~i~v~~~~~ 432 (433)
T 3bws_A 422 --DHQIRVYRRDG 432 (433)
T ss_dssp --TTEEEEEEETT
T ss_pred --CCeEEEEEecC
Confidence 99999999875
No 56
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.95 E-value=8e-26 Score=212.37 Aligned_cols=236 Identities=12% Similarity=0.175 Sum_probs=160.6
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCC--cEEEEEeecCcCCCCCCeeeecCC--CcEEEEec-CCeEEEEe
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETG--EAVYQLFQKNMTKTTWPSIRFSSD--EAVACRMA-TNEIQFFD 76 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g--~~~~~~~~~~~~~~~~~~~~~S~d--~~~la~~~-~~~i~v~~ 76 (434)
|++++|||+|++|+|++ .|++|+|||+.++ +.+.++..+. ..+.+++|+++ +++|++++ |++|++||
T Consensus 12 V~~~~~s~~g~~las~s-----~D~~v~iw~~~~~~~~~~~~l~gH~---~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd 83 (297)
T 2pm7_B 12 IHDAVMDYYGKRMATCS-----SDKTIKIFEVEGETHKLIDTLTGHE---GPVWRVDWAHPKFGTILASCSYDGKVMIWK 83 (297)
T ss_dssp EEEEEECTTSSEEEEEE-----TTSCEEEEEBCSSCBCCCEEECCCS---SCEEEEEECCGGGCSEEEEEETTTEEEEEE
T ss_pred eEEEEECCCCCEEEEEe-----CCCEEEEEecCCCCcEEEEEEcccc---CCeEEEEecCCCcCCEEEEEcCCCEEEEEE
Confidence 78999999999999999 8999999999743 5667776543 66779999874 88998885 68999999
Q ss_pred CCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCC--CC
Q 013871 77 TTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRG--ST 154 (434)
Q Consensus 77 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~--G~ 154 (434)
+..........+ ..+...+..+.|+|+ |.
T Consensus 84 ~~~~~~~~~~~~-------------------------------------------------~~h~~~v~~v~~~p~~~g~ 114 (297)
T 2pm7_B 84 EENGRWSQIAVH-------------------------------------------------AVHSASVNSVQWAPHEYGP 114 (297)
T ss_dssp BSSSCBCCCEEE-------------------------------------------------CCCSSCEEEEEECCGGGCS
T ss_pred cCCCceEEEEEe-------------------------------------------------ecCCCceeEEEeCcCCCCc
Confidence 865321000000 012223345556665 44
Q ss_pred eEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcC-------------CCEEEEEEccCCCeE
Q 013871 155 GLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYS-------------GSEFAVVYGFMPASA 221 (434)
Q Consensus 155 ~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspd-------------g~~~av~~g~~~~~v 221 (434)
.|+.. ..|.+.+ +|.+.............+...|.+++|+|+ ++.|+ +|..|+.|
T Consensus 115 ~l~s~---s~d~~v~-------~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~--sgs~D~~v 182 (297)
T 2pm7_B 115 MLLVA---SSDGKVS-------VVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFV--TGGADNLV 182 (297)
T ss_dssp EEEEE---ETTSEEE-------EEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEE--EEETTSCE
T ss_pred EEEEE---ECCCcEE-------EEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEE--EEcCCCcE
Confidence 43322 1222222 222221111111112234678999999997 35666 68889999
Q ss_pred EEEecccc-----eeEEe--CCcCeeEEEECCCC---CeEEEEecCCCCCeEEEEEccCCE---EEEEe--eCC--CceE
Q 013871 222 TIFNKKCR-----PILEL--GSGPYNTVRWNPKG---KFLCLAGFGNLPGDMAFWDYVDGK---QLGTT--RAE--CSVT 284 (434)
Q Consensus 222 ~l~d~~~~-----~~~~~--~~~~~~~i~~SP~g---~~l~~~~~~~~~g~i~iwd~~~~~---~i~~~--~~~--~~~~ 284 (434)
++||++.. ....+ |...+++++|+|++ ++|++++ .||.|+|||+++.. ....+ ..+ .+..
T Consensus 183 ~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s---~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~ 259 (297)
T 2pm7_B 183 KIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVS---QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWR 259 (297)
T ss_dssp EEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEE---TTSCEEEEEESSTTSCCEEEESSSSCCSSCEEE
T ss_pred EEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEE---CCCcEEEEEeCCCCCccceeeeecccCCCcEEE
Confidence 99998642 23334 78899999999995 7899998 56799999987642 11222 222 5566
Q ss_pred EEECCCCCEEEEEEcCCceeeCCcEEEEeec
Q 013871 285 SEWSPDGRYFMTATTAPRLQIDNGIKIFHHN 315 (434)
Q Consensus 285 ~~wspdg~~l~tas~~prl~~D~~i~iw~~~ 315 (434)
++|+|||++|++++. |+.|+||+..
T Consensus 260 ~~~s~~g~~las~~~------D~~v~lw~~~ 284 (297)
T 2pm7_B 260 ASWSLSGNVLALSGG------DNKVTLWKEN 284 (297)
T ss_dssp EEECSSSCCEEEEET------TSCEEEEEEC
T ss_pred EEECCCCCEEEEEcC------CCcEEEEEEC
Confidence 999999999999999 9999999974
No 57
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.95 E-value=2.2e-27 Score=229.85 Aligned_cols=238 Identities=11% Similarity=0.077 Sum_probs=163.5
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCC--cEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCC
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETG--EAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTT 78 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g--~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~ 78 (434)
|++++|||+|++|++++ .|+.|+|||+.++ +.+..+..+ ...+.+++|+||+++|++++ |+.|++||+.
T Consensus 14 v~~~~~s~~g~~l~~~~-----~d~~i~iw~~~~~~~~~~~~~~~h---~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~ 85 (377)
T 3dwl_C 14 SYEHAFNSQRTEFVTTT-----ATNQVELYEQDGNGWKHARTFSDH---DKIVTCVDWAPKSNRIVTCSQDRNAYVYEKR 85 (377)
T ss_dssp CSCCEECSSSSEEECCC-----SSSCBCEEEEETTEEEECCCBCCC---SSCEEEEEECTTTCCEEEEETTSSEEEC---
T ss_pred EEEEEECCCCCEEEEec-----CCCEEEEEEccCCceEEEEEEecC---CceEEEEEEeCCCCEEEEEeCCCeEEEEEcC
Confidence 78999999999999987 7899999999988 566666543 36777999999999999885 6799999998
Q ss_pred CCC---CceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeee-cccceeEEEECCCCC
Q 013871 79 DFP---KGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSF-FRCSTVQLNWNRGST 154 (434)
Q Consensus 79 ~~~---~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~-~~~~~~~~~ws~~G~ 154 (434)
... .......+...|.+++|+|++ ..+++- +.++.|++|++........+..... +...+..+.|+|+|+
T Consensus 86 ~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~-----~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 159 (377)
T 3dwl_C 86 PDGTWKQTLVLLRLNRAATFVRWSPNE-DKFAVG-----SGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNV 159 (377)
T ss_dssp ---CCCCEEECCCCSSCEEEEECCTTS-SCCEEE-----ESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSS
T ss_pred CCCceeeeeEecccCCceEEEEECCCC-CEEEEE-----ecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCC
Confidence 754 222233455679999999984 444432 3457899999987211113455555 788899999999999
Q ss_pred eEEEEEEecccccCceeecceeEEEEeeCC---------------cceeeeecCCCCCeEEEEECcCCCEEEEEEccCCC
Q 013871 155 GLLAVAQSDVDKTNQSYYGESKLNYLTTDG---------------THEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPA 219 (434)
Q Consensus 155 ~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~---------------~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~ 219 (434)
.|+... .|...+ +|.+.... .......+.+.+.|.+++|+|+|+.|+ ++..++
T Consensus 160 ~l~~~~---~d~~i~-------iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~--~~~~d~ 227 (377)
T 3dwl_C 160 LLAAGC---ADRKAY-------VLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALA--YAGHDS 227 (377)
T ss_dssp EEEEEE---SSSCEE-------EEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEE--EEETTT
T ss_pred EEEEEe---CCCEEE-------EEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEE--EEeCCC
Confidence 765532 343333 33332110 012222335678999999999999888 577899
Q ss_pred eEEEEecccce-----eE--EeCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEcc
Q 013871 220 SATIFNKKCRP-----IL--ELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV 269 (434)
Q Consensus 220 ~v~l~d~~~~~-----~~--~~~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~ 269 (434)
.|++||++... +. ..|...+.+++|+|+|++|++++.+ .+.+|+..
T Consensus 228 ~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~----~~~~~~~~ 280 (377)
T 3dwl_C 228 SVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNY----SPILLQGN 280 (377)
T ss_dssp EEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSS----SEEEECCC
T ss_pred cEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCC----cEEEEEeC
Confidence 99999986432 23 3378889999999999999887632 35577654
No 58
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.95 E-value=2.7e-25 Score=228.62 Aligned_cols=305 Identities=13% Similarity=0.140 Sum_probs=214.7
Q ss_pred cceEEecCCCc-EEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCC---CCCeeeecCC-CcEEEEec-CCeEEEE
Q 013871 2 LLLLTCLRVGL-IIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKT---TWPSIRFSSD-EAVACRMA-TNEIQFF 75 (434)
Q Consensus 2 V~~l~fSP~g~-~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~---~~~~~~~S~d-~~~la~~~-~~~i~v~ 75 (434)
|.+++|+|+|+ +|++.+ .|+.|+|||+.+++.+..+..+. . .+.+++|+|| +++|+++. ++.|++|
T Consensus 163 v~~~~~~~~~~~~l~~~~-----~d~~v~vwd~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw 234 (615)
T 1pgu_A 163 INACHLKQSRPMRSMTVG-----DDGSVVFYQGPPFKFSASDRTHH---KQGSFVRDVEFSPDSGEFVITVGSDRKISCF 234 (615)
T ss_dssp EEEEEECSSSSCEEEEEE-----TTTEEEEEETTTBEEEEEECSSS---CTTCCEEEEEECSTTCCEEEEEETTCCEEEE
T ss_pred EEEEEECCCCCcEEEEEe-----CCCcEEEEeCCCcceeeeecccC---CCCceEEEEEECCCCCCEEEEEeCCCeEEEE
Confidence 68999999998 788888 89999999999999988887643 4 6779999999 99999874 6899999
Q ss_pred eCCCCCCceee-e---eecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeec----ccceeEE
Q 013871 76 DTTDFPKGILY-R---LRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFF----RCSTVQL 147 (434)
Q Consensus 76 ~~~~~~~~~~~-~---~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~----~~~~~~~ 147 (434)
|+.+....... . .+...|..+.|+ + +..+++. +.++.|++|++.+ .+.+.....+ ......+
T Consensus 235 d~~~~~~~~~~~~~~~~~~~~v~~~~~~-~-~~~l~~~-----~~d~~i~~wd~~~---~~~~~~~~~~~~~~~~~~~~~ 304 (615)
T 1pgu_A 235 DGKSGEFLKYIEDDQEPVQGGIFALSWL-D-SQKFATV-----GADATIRVWDVTT---SKCVQKWTLDKQQLGNQQVGV 304 (615)
T ss_dssp ETTTCCEEEECCBTTBCCCSCEEEEEES-S-SSEEEEE-----ETTSEEEEEETTT---TEEEEEEECCTTCGGGCEEEE
T ss_pred ECCCCCEeEEecccccccCCceEEEEEc-C-CCEEEEE-----cCCCcEEEEECCC---CcEEEEEcCCCCcccCceeEE
Confidence 99876543333 2 455679999999 6 5555542 3457899999987 6666665554 3456677
Q ss_pred EECCCCCeEEEEEEecccccCceeeccee--EEEEe--------------------------------------------
Q 013871 148 NWNRGSTGLLAVAQSDVDKTNQSYYGESK--LNYLT-------------------------------------------- 181 (434)
Q Consensus 148 ~ws~~G~~l~~~~~~~~d~~~~~~~g~~~--l~~l~-------------------------------------------- 181 (434)
.|+ ++..+++.. .|.....|.-... +..+.
T Consensus 305 ~~~-~~~~l~~~~---~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~ 380 (615)
T 1pgu_A 305 VAT-GNGRIISLS---LDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDN 380 (615)
T ss_dssp EEE-ETTEEEEEE---TTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEEC
T ss_pred EeC-CCCeEEEEE---CCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEE
Confidence 775 677655432 2333333221110 00000
Q ss_pred -------------------eCC---------------------------------cceeeeecCCCCCeEEEEECcCCCE
Q 013871 182 -------------------TDG---------------------------------THEGLVPLRKEGPVHDVQWSYSGSE 209 (434)
Q Consensus 182 -------------------~~~---------------------------------~~~~~v~l~~~~~i~~v~wspdg~~ 209 (434)
... .......+....++.+++|+ ++.
T Consensus 381 ~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 458 (615)
T 1pgu_A 381 SKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLS--QNY 458 (615)
T ss_dssp CSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEEC--SSE
T ss_pred CCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEc--CCE
Confidence 000 00000000112334444444 444
Q ss_pred EEEEEccC-CCeEEEEeccccee--EEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC-C--C
Q 013871 210 FAVVYGFM-PASATIFNKKCRPI--LEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA-E--C 281 (434)
Q Consensus 210 ~av~~g~~-~~~v~l~d~~~~~~--~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~-~--~ 281 (434)
++ ++.. ++.+++||+....+ ..+ |...+++++|+|+|++|++++ .+|.|++||+.+++.+..+.+ | .
T Consensus 459 l~--~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~---~dg~i~iw~~~~~~~~~~~~~~h~~~ 533 (615)
T 1pgu_A 459 VA--VGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGD---VMGKILLYDLQSREVKTSRWAFRTSK 533 (615)
T ss_dssp EE--EEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEE---TTSCEEEEETTTTEEEECCSCCCSSC
T ss_pred EE--EeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcC---CCCeEEEeeCCCCcceeEeecCCCCc
Confidence 44 3555 78888998876544 333 678899999999999999998 567999999999999988865 4 5
Q ss_pred ceEEEECC----------CCCEEEEEEcCCceeeCCcEEEEeecC--ceeeee--ecccceeeEEEcCCCCCCCC
Q 013871 282 SVTSEWSP----------DGRYFMTATTAPRLQIDNGIKIFHHNG--SLFFKK--MFDKLFQAEWKPVSPDKFGD 342 (434)
Q Consensus 282 ~~~~~wsp----------dg~~l~tas~~prl~~D~~i~iw~~~g--~~~~~~--~~~~~~~~~w~p~~~~~~~~ 342 (434)
+..++|+| ||++|++++. |+.|+||++.. +++... +...+..+.|.|++. ++..
T Consensus 534 v~~~~~sp~~~~~~~~~~~~~~l~~~~~------dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~ 601 (615)
T 1pgu_A 534 INAISWKPAEKGANEEEIEEDLVATGSL------DTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSS 601 (615)
T ss_dssp EEEEEECCCC------CCSCCEEEEEET------TSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEE
T ss_pred eeEEEEcCccccccccccCCCEEEEEcC------CCcEEEEECCCCceechhhhcCccceEEEEEcCCCC-eEEe
Confidence 67799999 9999999999 99999999965 344432 556899999999998 7665
No 59
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.95 E-value=4.3e-25 Score=208.37 Aligned_cols=263 Identities=16% Similarity=0.215 Sum_probs=198.6
Q ss_pred CCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcC
Q 013871 48 TKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACG 126 (434)
Q Consensus 48 ~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~ 126 (434)
|...+.+++|+||+++|+++. ++.|++|+..+.........+...|.+++|+|+ +..++. .+.++.|++|++.
T Consensus 22 h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s-----~~~d~~i~vwd~~ 95 (312)
T 4ery_A 22 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD-SNLLVS-----ASDDKTLKIWDVS 95 (312)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTT-SSEEEE-----EETTSEEEEEETT
T ss_pred cCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCC-CCEEEE-----ECCCCEEEEEECC
Confidence 346788999999999999885 689999999775543444456668999999998 455553 2456799999998
Q ss_pred CCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcC
Q 013871 127 KDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYS 206 (434)
Q Consensus 127 ~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspd 206 (434)
+ ++.+.....+...+..+.|+|+|+.|+.. ..|...+ .+++...........+..+|.+++|+|+
T Consensus 96 ~---~~~~~~~~~~~~~v~~~~~~~~~~~l~s~---~~d~~i~---------iwd~~~~~~~~~~~~~~~~v~~~~~~~~ 160 (312)
T 4ery_A 96 S---GKCLKTLKGHSNYVFCCNFNPQSNLIVSG---SFDESVR---------IWDVKTGKCLKTLPAHSDPVSAVHFNRD 160 (312)
T ss_dssp T---CCEEEEEECCSSCEEEEEECSSSSEEEEE---ETTSCEE---------EEETTTCCEEEEECCCSSCEEEEEECTT
T ss_pred C---CcEEEEEcCCCCCEEEEEEcCCCCEEEEE---eCCCcEE---------EEECCCCEEEEEecCCCCcEEEEEEcCC
Confidence 8 77788888888889999999999986543 2343333 3333332221222234679999999999
Q ss_pred CCEEEEEEccCCCeEEEEeccc-ceeEEe---CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCC-
Q 013871 207 GSEFAVVYGFMPASATIFNKKC-RPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAEC- 281 (434)
Q Consensus 207 g~~~av~~g~~~~~v~l~d~~~-~~~~~~---~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~- 281 (434)
++.|+ ++..++.|.+||++. ..+..+ +..++..++|+|+|++|++++ .+|.|++||+.+++.+..+.++.
T Consensus 161 ~~~l~--~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~d~~i~iwd~~~~~~~~~~~~~~~ 235 (312)
T 4ery_A 161 GSLIV--SSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT---LDNTLKLWDYSKGKCLKTYTGHKN 235 (312)
T ss_dssp SSEEE--EEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEE---TTTEEEEEETTTTEEEEEECSSCC
T ss_pred CCEEE--EEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEc---CCCeEEEEECCCCcEEEEEEecCC
Confidence 99888 577899999999974 334443 456789999999999999998 56799999999999988887652
Q ss_pred ---ceEEEE-CCCCCEEEEEEcCCceeeCCcEEEEeecCc-eeeee--ecccceeeEEEcCCCCCCCC
Q 013871 282 ---SVTSEW-SPDGRYFMTATTAPRLQIDNGIKIFHHNGS-LFFKK--MFDKLFQAEWKPVSPDKFGD 342 (434)
Q Consensus 282 ---~~~~~w-spdg~~l~tas~~prl~~D~~i~iw~~~g~-~~~~~--~~~~~~~~~w~p~~~~~~~~ 342 (434)
.....| .+++++|++++. |+.|+|||+... ++... +.+.+..++|+|....++..
T Consensus 236 ~~~~~~~~~~~~~~~~l~sg~~------dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~ 297 (312)
T 4ery_A 236 EKYCIFANFSVTGGKWIVSGSE------DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 297 (312)
T ss_dssp SSSCCCEEEECSSSCEEEECCT------TSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEE
T ss_pred ceEEEEEEEEeCCCcEEEEECC------CCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEE
Confidence 122444 478899999999 999999999654 44333 45679999999998776654
No 60
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.95 E-value=2.5e-25 Score=219.24 Aligned_cols=305 Identities=11% Similarity=0.085 Sum_probs=213.4
Q ss_pred ceEEecCCCc-EEEEEecCCCCCCC----cEEEEEc--CCCcEEE--EEeecCcCCCCCCeeeecC--------------
Q 013871 3 LLLTCLRVGL-IIQTFQKSSTPQEK----NVILWKT--ETGEAVY--QLFQKNMTKTTWPSIRFSS-------------- 59 (434)
Q Consensus 3 ~~l~fSP~g~-~L~t~~~~~~~~d~----~v~iWd~--~~g~~~~--~~~~~~~~~~~~~~~~~S~-------------- 59 (434)
....|++.|. +|++.+-. ...|+ .|+|||+ .+|+++. .+..+. ..+..+++++
T Consensus 66 ~~~~w~~~g~~~~~~g~~~-~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~d~~~~~~~g~~~~ 141 (415)
T 2hqs_A 66 QPAAWSALGIDAVVVGQVT-PNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNK---QWLRYAGHTASDEVFEKLTGIKGA 141 (415)
T ss_dssp CHHHHHTTTCCEEEEEEEE-ECTTSCEEEEEEEEECSSSTTCEEEEEEEEECG---GGHHHHHHHHHHHHHHHHHSSCCC
T ss_pred CHHHHHhcCCCEEEEEEEE-ECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcCh---hHHHHHHHHHHHHHHHHHcCCCCc
Confidence 3456788885 55565421 11345 8999999 9999874 355443 3454556654
Q ss_pred CCcEEEEe-cC------CeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCC
Q 013871 60 DEAVACRM-AT------NEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQ 132 (434)
Q Consensus 60 d~~~la~~-~~------~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~ 132 (434)
.+..++++ .+ ++|++||..... ......+...+.+++|||+ +..+++...+. ....|++|++.+ ++
T Consensus 142 ~~~~l~~~s~~~~~~~~~~i~i~d~~g~~-~~~l~~~~~~v~~~~~Spd-g~~la~~s~~~--~~~~i~~~d~~t---g~ 214 (415)
T 2hqs_A 142 FRTRIAYVVQTNGGQFPYELRVSDYDGYN-QFVVHRSPQPLMSPAWSPD-GSKLAYVTFES--GRSALVIQTLAN---GA 214 (415)
T ss_dssp TTCEEEEEEECSSSSCCEEEEEEETTSCS-CEEEEEESSCEEEEEECTT-SSEEEEEECTT--SSCEEEEEETTT---CC
T ss_pred CCCEEEEEEecCCCCccceEEEEcCCCCC-CEEEeCCCCcceeeEEcCC-CCEEEEEEecC--CCcEEEEEECCC---Cc
Confidence 25555554 32 699999997533 3444456678999999999 55665544322 236899999986 44
Q ss_pred ceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEE
Q 013871 133 PLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAV 212 (434)
Q Consensus 133 ~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av 212 (434)
.. ....+......+.|+|||+.|++..+.+ +...|+.+++.+.... ....+.+.+.+++|+|||+.+++
T Consensus 215 ~~-~l~~~~~~~~~~~~spdg~~la~~~~~~---------g~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~spdg~~l~~ 283 (415)
T 2hqs_A 215 VR-QVASFPRHNGAPAFSPDGSKLAFALSKT---------GSLNLYVMDLASGQIR-QVTDGRSNNTEPTWFPDSQNLAF 283 (415)
T ss_dssp EE-EEECCSSCEEEEEECTTSSEEEEEECTT---------SSCEEEEEETTTCCEE-ECCCCSSCEEEEEECTTSSEEEE
T ss_pred EE-EeecCCCcccCEEEcCCCCEEEEEEecC---------CCceEEEEECCCCCEE-eCcCCCCcccceEECCCCCEEEE
Confidence 43 4455666788999999999987654321 2335788877665332 22234678999999999999997
Q ss_pred EEccCCC--eEEEEecccceeEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceEEEEC
Q 013871 213 VYGFMPA--SATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWS 288 (434)
Q Consensus 213 ~~g~~~~--~v~l~d~~~~~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~~~ws 288 (434)
.+. .++ .|.+||+.+.....+ +...+.+++|||+|++|++++.++.++.|++||+.+++......+..+..++|+
T Consensus 284 ~s~-~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~s 362 (415)
T 2hqs_A 284 TSD-QAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLA 362 (415)
T ss_dssp EEC-TTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSSSCEEEEEC
T ss_pred EEC-CCCCcEEEEEECCCCCEEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEEecCCCCcCCeEEc
Confidence 543 233 788889876554444 556778899999999999988654346899999998876544444456679999
Q ss_pred CCCCEEEEEEcCCceeeCC---cEEEEeecCceeeee--ecccceeeEEEcCC
Q 013871 289 PDGRYFMTATTAPRLQIDN---GIKIFHHNGSLFFKK--MFDKLFQAEWKPVS 336 (434)
Q Consensus 289 pdg~~l~tas~~prl~~D~---~i~iw~~~g~~~~~~--~~~~~~~~~w~p~~ 336 (434)
|||++|++++. |+ .|++|+++|..+... +..++.+++|.|..
T Consensus 363 pdg~~l~~~s~------~~~~~~l~~~d~~g~~~~~l~~~~~~v~~~~~~~~~ 409 (415)
T 2hqs_A 363 PNGTMVIYSSS------QGMGSVLNLVSTDGRFKARLPATDGQVKFPAWSPYL 409 (415)
T ss_dssp TTSSEEEEEEE------ETTEEEEEEEETTSCCEEECCCSSSEEEEEEECCCC
T ss_pred CCCCEEEEEEc------CCCccEEEEEECCCCcEEEeeCCCCCCcCCcccccc
Confidence 99999999998 66 799999998876655 33579999999974
No 61
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.95 E-value=2.6e-25 Score=217.40 Aligned_cols=254 Identities=12% Similarity=0.142 Sum_probs=188.2
Q ss_pred CCCCCeeeecCCCcEEEEecCCeEEEEeCCCCCCceeeeeec------------------CCeeEEEEeCCCCCeEEEEe
Q 013871 49 KTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPKGILYRLRV------------------PGVAAFEVSKAPGSHVAVFV 110 (434)
Q Consensus 49 ~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~~~~~~~~~------------------~~v~~~~~sp~~~~~ia~~~ 110 (434)
...+.+++|||||++||++.++.+++|++.+.........+. ..|.+++|+|+ +..++.
T Consensus 64 ~~~V~~v~fspdg~~la~g~~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d-g~~l~s-- 140 (393)
T 1erj_A 64 TSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPD-GKFLAT-- 140 (393)
T ss_dssp SSCCCEEEECTTSSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTT-SSEEEE--
T ss_pred CCEEEEEEECCCCCEEEEEcCCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCC-CCEEEE--
Confidence 367779999999999999988999999987754322111111 13889999998 555554
Q ss_pred cCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeee
Q 013871 111 PESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLV 190 (434)
Q Consensus 111 ~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v 190 (434)
++.++.|+||++.+ ++.+.....|...+..+.|+|+|+.|+.. ..|.+.+ ++++... ....
T Consensus 141 ---~~~d~~i~iwd~~~---~~~~~~~~~h~~~v~~~~~~p~~~~l~s~---s~d~~v~---------iwd~~~~-~~~~ 201 (393)
T 1erj_A 141 ---GAEDRLIRIWDIEN---RKIVMILQGHEQDIYSLDYFPSGDKLVSG---SGDRTVR---------IWDLRTG-QCSL 201 (393)
T ss_dssp ---EETTSCEEEEETTT---TEEEEEECCCSSCEEEEEECTTSSEEEEE---ETTSEEE---------EEETTTT-EEEE
T ss_pred ---EcCCCeEEEEECCC---CcEEEEEccCCCCEEEEEEcCCCCEEEEe---cCCCcEE---------EEECCCC-eeEE
Confidence 34567999999987 77777888888999999999999986543 2344433 3333333 3334
Q ss_pred ecCCCCCeEEEEECc-CCCEEEEEEccCCCeEEEEecccc-eeEEe---------CCcCeeEEEECCCCCeEEEEecCCC
Q 013871 191 PLRKEGPVHDVQWSY-SGSEFAVVYGFMPASATIFNKKCR-PILEL---------GSGPYNTVRWNPKGKFLCLAGFGNL 259 (434)
Q Consensus 191 ~l~~~~~i~~v~wsp-dg~~~av~~g~~~~~v~l~d~~~~-~~~~~---------~~~~~~~i~~SP~g~~l~~~~~~~~ 259 (434)
.+.....+..++|+| +++.|+ +|..++.|++||++.. .+..+ |...+.+++|+|+|++|++++ .
T Consensus 202 ~~~~~~~v~~~~~~~~~~~~l~--~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s---~ 276 (393)
T 1erj_A 202 TLSIEDGVTTVAVSPGDGKYIA--AGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGS---L 276 (393)
T ss_dssp EEECSSCEEEEEECSTTCCEEE--EEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEE---T
T ss_pred EEEcCCCcEEEEEECCCCCEEE--EEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEe---C
Confidence 444567899999999 888887 5788999999998643 33322 567899999999999999998 5
Q ss_pred CCeEEEEEccCC------------EEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec-Cceeee--e
Q 013871 260 PGDMAFWDYVDG------------KQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLFFK--K 322 (434)
Q Consensus 260 ~g~i~iwd~~~~------------~~i~~~~~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~-g~~~~~--~ 322 (434)
+|.|++||+.+. .+...+.+| .+..++|+|+|++|++++. |+.|+|||.. |+.+.. .
T Consensus 277 d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~------D~~v~iwd~~~~~~~~~l~~ 350 (393)
T 1erj_A 277 DRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSK------DRGVLFWDKKSGNPLLMLQG 350 (393)
T ss_dssp TSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEET------TSEEEEEETTTCCEEEEEEC
T ss_pred CCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeC------CCeEEEEECCCCeEEEEECC
Confidence 679999998753 234455555 4667999999999999999 9999999984 555443 3
Q ss_pred ecccceeeEEEcC
Q 013871 323 MFDKLFQAEWKPV 335 (434)
Q Consensus 323 ~~~~~~~~~w~p~ 335 (434)
+...+..+.|.|.
T Consensus 351 h~~~v~~v~~~~~ 363 (393)
T 1erj_A 351 HRNSVISVAVANG 363 (393)
T ss_dssp CSSCEEEEEECSS
T ss_pred CCCCEEEEEecCC
Confidence 5567999999874
No 62
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.95 E-value=7.8e-26 Score=216.98 Aligned_cols=262 Identities=12% Similarity=0.113 Sum_probs=184.0
Q ss_pred cceEEecCC---CcEEEEEecCCCCCCCcEEEEEcCC-CcEE-EEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEE
Q 013871 2 LLLLTCLRV---GLIIQTFQKSSTPQEKNVILWKTET-GEAV-YQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFF 75 (434)
Q Consensus 2 V~~l~fSP~---g~~L~t~~~~~~~~d~~v~iWd~~~-g~~~-~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~ 75 (434)
|++|+|||+ |++|++++ .|+.|+|||+.+ +..+ ..+..+. ..+.+++|+||+++|+++. ++.|++|
T Consensus 42 v~~~~~~~~~~~g~~l~~~~-----~dg~i~iw~~~~~~~~~~~~~~~h~---~~v~~~~~~~~~~~l~s~~~dg~v~iw 113 (368)
T 3mmy_A 42 IGCLSFSPPTLPGNFLIAGS-----WANDVRCWEVQDSGQTIPKAQQMHT---GPVLDVCWSDDGSKVFTASCDKTAKMW 113 (368)
T ss_dssp EEEEEECCTTSSSEEEEEEE-----TTSEEEEEEECTTSCEEEEEEEECS---SCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred eEEEEEcCCCCCceEEEEEC-----CCCcEEEEEcCCCCceeEEEecccc---CCEEEEEECcCCCEEEEEcCCCcEEEE
Confidence 789999999 69999999 899999999987 6665 4555443 6777999999999999885 6799999
Q ss_pred eCCCCCCceeeeeecCCeeEEEE--eCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCC
Q 013871 76 DTTDFPKGILYRLRVPGVAAFEV--SKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGS 153 (434)
Q Consensus 76 ~~~~~~~~~~~~~~~~~v~~~~~--sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G 153 (434)
|+..... .....+...|.++.| +|+ +..+++ .+.++.|++|++.. .+.+.....+. ....+.+..
T Consensus 114 d~~~~~~-~~~~~~~~~v~~~~~~~~~~-~~~l~~-----~~~dg~i~vwd~~~---~~~~~~~~~~~-~~~~~~~~~-- 180 (368)
T 3mmy_A 114 DLSSNQA-IQIAQHDAPVKTIHWIKAPN-YSCVMT-----GSWDKTLKFWDTRS---SNPMMVLQLPE-RCYCADVIY-- 180 (368)
T ss_dssp ETTTTEE-EEEEECSSCEEEEEEEECSS-CEEEEE-----EETTSEEEEECSSC---SSCSEEEECSS-CEEEEEEET--
T ss_pred EcCCCCc-eeeccccCceEEEEEEeCCC-CCEEEE-----ccCCCcEEEEECCC---CcEEEEEecCC-CceEEEecC--
Confidence 9987543 233445667999999 666 344443 24567999999987 66666655443 444444443
Q ss_pred CeEEEEEEecccccCceeecceeEEEEeeCCcceeeee--cCCCCCeEEEEECcCCCE--EEEEEccCCCeEEEEecccc
Q 013871 154 TGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVP--LRKEGPVHDVQWSYSGSE--FAVVYGFMPASATIFNKKCR 229 (434)
Q Consensus 154 ~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~--l~~~~~i~~v~wspdg~~--~av~~g~~~~~v~l~d~~~~ 229 (434)
..+++.. .+.. +..++.......... ......+..+.+.++... -.++++..++.+.+||++..
T Consensus 181 ~~~~~~~---~~~~---------i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~ 248 (368)
T 3mmy_A 181 PMAVVAT---AERG---------LIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPP 248 (368)
T ss_dssp TEEEEEE---GGGC---------EEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCS
T ss_pred CeeEEEe---CCCc---------EEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCC
Confidence 3443322 2222 233333222111111 122345566666555433 22336888999999999643
Q ss_pred ----eeEEe--CCc------------CeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECC
Q 013871 230 ----PILEL--GSG------------PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSP 289 (434)
Q Consensus 230 ----~~~~~--~~~------------~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wsp 289 (434)
.+..+ +.. .+++++|+|+|++|++++ .+|.|+|||+.+++++..+..| .+..++|+|
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~ 325 (368)
T 3mmy_A 249 NPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVG---SDGRFSFWDKDARTKLKTSEQLDQPISACCFNH 325 (368)
T ss_dssp CHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEE---TTSCEEEEETTTTEEEEECCCCSSCEEEEEECT
T ss_pred CccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEc---cCCeEEEEECCCCcEEEEecCCCCCceEEEECC
Confidence 23333 333 699999999999999999 6679999999999999988876 566799999
Q ss_pred CCCEEEEEEc
Q 013871 290 DGRYFMTATT 299 (434)
Q Consensus 290 dg~~l~tas~ 299 (434)
||++|++++.
T Consensus 326 ~g~~l~~~s~ 335 (368)
T 3mmy_A 326 NGNIFAYASS 335 (368)
T ss_dssp TSSCEEEEEC
T ss_pred CCCeEEEEec
Confidence 9999999998
No 63
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.95 E-value=3.7e-25 Score=227.55 Aligned_cols=292 Identities=10% Similarity=0.051 Sum_probs=215.9
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCC----cEEEEEeecCcCCCC-CCeeeecC--CCcEEEEec-CCeEE
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETG----EAVYQLFQKNMTKTT-WPSIRFSS--DEAVACRMA-TNEIQ 73 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g----~~~~~~~~~~~~~~~-~~~~~~S~--d~~~la~~~-~~~i~ 73 (434)
|.+++|||+|++|++.+ ++.|+|||+.++ +.+..+..+. .. +.+++|+| |+++|+++. ++.|+
T Consensus 21 v~~~~~spdg~~l~~~~------~~~v~v~~~~~~~~~~~~~~~~~~h~---~~~v~~~~~sp~~~~~~l~s~~~dg~v~ 91 (615)
T 1pgu_A 21 TTHLSYDPTTNAIAYPC------GKSAFVRCLDDGDSKVPPVVQFTGHG---SSVVTTVKFSPIKGSQYLCSGDESGKVI 91 (615)
T ss_dssp CCCCEEETTTTEEEEEE------TTEEEEEECCSSCCSSCSEEEECTTT---TSCEEEEEECSSTTCCEEEEEETTSEEE
T ss_pred eeEEEECCCCCEEEEec------CCeEEEEECCCCCCccccceEEecCC---CceEEEEEECcCCCCCEEEEecCCCEEE
Confidence 78999999999999987 578999999999 8888886654 56 77999999 999999985 67999
Q ss_pred EEeCCCC--------CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeeccccee
Q 013871 74 FFDTTDF--------PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTV 145 (434)
Q Consensus 74 v~~~~~~--------~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~ 145 (434)
+|++... ........+...|..++|+|+ +..+++...+ ....+.|.+|+. +..+.....+...+.
T Consensus 92 vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~~-~~~~~~v~~~d~-----~~~~~~~~~~~~~v~ 164 (615)
T 1pgu_A 92 VWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFE-GRRLCVVGEG-RDNFGVFISWDS-----GNSLGEVSGHSQRIN 164 (615)
T ss_dssp EEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTT-SSEEEEEECC-SSCSEEEEETTT-----CCEEEECCSCSSCEE
T ss_pred EEeCCCCcccccccccccchhhcccccEEEEEEeCC-CCEEEEeccC-CCCccEEEEEEC-----CCcceeeecCCccEE
Confidence 9999642 111222334567999999999 4555443221 222467777773 567777778888999
Q ss_pred EEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeec-CCCC---CeEEEEECcC-CCEEEEEEccCCCe
Q 013871 146 QLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL-RKEG---PVHDVQWSYS-GSEFAVVYGFMPAS 220 (434)
Q Consensus 146 ~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l-~~~~---~i~~v~wspd-g~~~av~~g~~~~~ 220 (434)
.+.|+|+|..+++.++ .|...+ .++.... .....+ .+.+ .|.+++|+|+ ++.++ ++..++.
T Consensus 165 ~~~~~~~~~~~l~~~~--~d~~v~---------vwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~--~~~~dg~ 230 (615)
T 1pgu_A 165 ACHLKQSRPMRSMTVG--DDGSVV---------FYQGPPF-KFSASDRTHHKQGSFVRDVEFSPDSGEFVI--TVGSDRK 230 (615)
T ss_dssp EEEECSSSSCEEEEEE--TTTEEE---------EEETTTB-EEEEEECSSSCTTCCEEEEEECSTTCCEEE--EEETTCC
T ss_pred EEEECCCCCcEEEEEe--CCCcEE---------EEeCCCc-ceeeeecccCCCCceEEEEEECCCCCCEEE--EEeCCCe
Confidence 9999999986544432 333333 3333222 222222 2455 8999999999 98888 4677899
Q ss_pred EEEEecc-cceeEEe------CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC------CceEEEE
Q 013871 221 ATIFNKK-CRPILEL------GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE------CSVTSEW 287 (434)
Q Consensus 221 v~l~d~~-~~~~~~~------~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~------~~~~~~w 287 (434)
|.+||++ ...+..+ |...+.++.|+ ++++|++++ .+|.|++||+.+++.+..+..+ .+..+.|
T Consensus 231 i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~---~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (615)
T 1pgu_A 231 ISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVG---ADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVA 306 (615)
T ss_dssp EEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEE---TTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEE
T ss_pred EEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEc---CCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEe
Confidence 9999986 4444444 56889999999 999999998 5579999999999988888765 3445778
Q ss_pred CCCCCEEEEEEcCCceeeCCcEEEEeec-Cceeeee--ecccceeeEEEcC
Q 013871 288 SPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLFFKK--MFDKLFQAEWKPV 335 (434)
Q Consensus 288 spdg~~l~tas~~prl~~D~~i~iw~~~-g~~~~~~--~~~~~~~~~w~p~ 335 (434)
+ ++.+|++++. |+.|++|++. ++.+... +...+..+.| |.
T Consensus 307 ~-~~~~l~~~~~------~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~ 349 (615)
T 1pgu_A 307 T-GNGRIISLSL------DGTLNFYELGHDEVLKTISGHNKGITALTV-NP 349 (615)
T ss_dssp E-ETTEEEEEET------TSCEEEEETTEEEEEEEECCCSSCEEEEET-TT
T ss_pred C-CCCeEEEEEC------CCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cC
Confidence 5 9999999999 9999999986 4443332 4456777777 65
No 64
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.95 E-value=9.6e-26 Score=221.38 Aligned_cols=273 Identities=9% Similarity=0.078 Sum_probs=196.1
Q ss_pred ceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCC
Q 013871 3 LLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFP 81 (434)
Q Consensus 3 ~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~ 81 (434)
....|+|+|++|++++ .|+.|+|||+.+++.+..+..+ ...+.+++|+||+++|++++ ++.|++||+....
T Consensus 101 ~~~~~~~~~~~l~~~~-----~dg~i~iwd~~~~~~~~~~~~h---~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~ 172 (420)
T 3vl1_A 101 AVDTAKLQMRRFILGT-----TEGDIKVLDSNFNLQREIDQAH---VSEITKLKFFPSGEALISSSQDMQLKIWSVKDGS 172 (420)
T ss_dssp EEEEECSSSCEEEEEE-----TTSCEEEECTTSCEEEEETTSS---SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred EEEEEecCCCEEEEEE-----CCCCEEEEeCCCcceeeecccc---cCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCc
Confidence 4557999999999999 8999999999999877665443 36778999999999999885 6799999998866
Q ss_pred CceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeec---------------------
Q 013871 82 KGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFF--------------------- 140 (434)
Q Consensus 82 ~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~--------------------- 140 (434)
.......+...|.+++|+|+ +..++. .+.++.|++|++.+ ++.+.....+
T Consensus 173 ~~~~~~~h~~~v~~~~~~~~-~~~l~s-----~~~d~~v~iwd~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 243 (420)
T 3vl1_A 173 NPRTLIGHRATVTDIAIIDR-GRNVLS-----ASLDGTIRLWECGT---GTTIHTFNRKENPHDGVNSIALFVGTDRQLH 243 (420)
T ss_dssp CCEEEECCSSCEEEEEEETT-TTEEEE-----EETTSCEEEEETTT---TEEEEEECBTTBTTCCEEEEEEEECCCSSCG
T ss_pred CceEEcCCCCcEEEEEEcCC-CCEEEE-----EcCCCcEEEeECCC---CceeEEeecCCCCCCCccEEEEecCCcceee
Confidence 55555566778999999998 455543 24567899999987 5555544432
Q ss_pred ---ccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcce-eeeecCCCCCeEEEEECcCCC-EEEEEEc
Q 013871 141 ---RCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHE-GLVPLRKEGPVHDVQWSYSGS-EFAVVYG 215 (434)
Q Consensus 141 ---~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~-~~v~l~~~~~i~~v~wspdg~-~~av~~g 215 (434)
...+..+.|+|+|+.|++.. .|.. +..+++..... ..+...+...|.+++|+|++. .|+ +|
T Consensus 244 ~~~~~~v~~~~~s~~~~~l~~~~---~dg~---------i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~--~g 309 (420)
T 3vl1_A 244 EISTSKKNNLEFGTYGKYVIAGH---VSGV---------ITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIY--AG 309 (420)
T ss_dssp GGCCCCCCTTCSSCTTEEEEEEE---TTSC---------EEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEE--EE
T ss_pred ecccCcccceEEcCCCCEEEEEc---CCCe---------EEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEE--EE
Confidence 23344566789998765532 2332 33334333221 222223468999999999998 666 57
Q ss_pred cCCCeEEEEecccc--eeEEe---CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC---EEE-------EEe-eC
Q 013871 216 FMPASATIFNKKCR--PILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG---KQL-------GTT-RA 279 (434)
Q Consensus 216 ~~~~~v~l~d~~~~--~~~~~---~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~---~~i-------~~~-~~ 279 (434)
..++.|.+||++.. ++..+ +...++++.| |+|++|++++ .+|.|++||+.+. +.+ ... ..
T Consensus 310 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~---~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~ 385 (420)
T 3vl1_A 310 YENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSG---FDTSIKLDIISDPESERPAIEFETPTFLVSND 385 (420)
T ss_dssp ETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEET---TTEEEEEEEECCTTCCSCEECTTSCEEECCSS
T ss_pred eCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEec---CCccEEEEeccCCCCCccceeccCccEEccCC
Confidence 78999999999642 23333 5677777755 5788999988 5679999998762 111 111 12
Q ss_pred CCceEEEECCCCC---EEEEEEcCCceeeCCcEEEEeecC
Q 013871 280 ECSVTSEWSPDGR---YFMTATTAPRLQIDNGIKIFHHNG 316 (434)
Q Consensus 280 ~~~~~~~wspdg~---~l~tas~~prl~~D~~i~iw~~~g 316 (434)
..+..++|+|||. .|++++. ++.+.+|+++.
T Consensus 386 ~~v~~~~~s~~~~~~g~l~a~g~------~g~~~~~~~~~ 419 (420)
T 3vl1_A 386 DAVSQFCYVSDDESNGEVLEVGK------NNFCALYNLSN 419 (420)
T ss_dssp CCCCEEEEECCSSSSCEEEEEET------TTEEEEEESCC
T ss_pred cceEEEEEccCCCCcceEEEEcC------CceEEEEeccC
Confidence 2666799999999 7888888 99999999753
No 65
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.95 E-value=2.8e-26 Score=231.94 Aligned_cols=284 Identities=7% Similarity=0.042 Sum_probs=189.5
Q ss_pred cceEEecCCC---------cEEEEEecC--------------CCCCCCcEEEEEcCCCcEE----EEEeecCcCCCCCCe
Q 013871 2 LLLLTCLRVG---------LIIQTFQKS--------------STPQEKNVILWKTETGEAV----YQLFQKNMTKTTWPS 54 (434)
Q Consensus 2 V~~l~fSP~g---------~~L~t~~~~--------------~~~~d~~v~iWd~~~g~~~----~~~~~~~~~~~~~~~ 54 (434)
|++|+|+|++ +|||+.... +++.|+.|+|||+.++++. ..+.++ ...+..
T Consensus 136 V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~---~~~V~~ 212 (524)
T 2j04_B 136 VTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHS---FGEVWD 212 (524)
T ss_dssp -CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEEC---CCSEEE
T ss_pred eeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEec---CCcEEE
Confidence 7899999997 899987632 2346889999999887642 223332 255668
Q ss_pred eeecCC------CcEEEEe-cCCeEEEEeCCCCCCc-----------eeeeeecCCeeEEEEeCCCCCeEEEEecCCCCC
Q 013871 55 IRFSSD------EAVACRM-ATNEIQFFDTTDFPKG-----------ILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGS 116 (434)
Q Consensus 55 ~~~S~d------~~~la~~-~~~~i~v~~~~~~~~~-----------~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~ 116 (434)
++|+|+ +.+||++ .|++|++|++...... .....+...|.+++|+|+ + .|+. ++.
T Consensus 213 v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~-~las-----gs~ 285 (524)
T 2j04_B 213 LKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-T-TVVC-----GFK 285 (524)
T ss_dssp EEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-S-EEEE-----EET
T ss_pred EEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-C-eEEE-----EeC
Confidence 999997 5788887 4689999999764321 012234467999999986 3 4543 356
Q ss_pred CceEEEEEcCCCCCCCceeeeeecccceeEE--EECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeec-C
Q 013871 117 PASVQIYACGKDLQSQPLARRSFFRCSTVQL--NWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL-R 193 (434)
Q Consensus 117 ~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~--~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l-~ 193 (434)
++.|++|++.+. ..+......|...+..+ .|+++|..+++. ...|.+.+.|. + ... .+...+ .
T Consensus 286 DgtV~lWD~~~~--~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS--~S~D~tvklWD-------~--~~~-~~~~~~~~ 351 (524)
T 2j04_B 286 NGFVAEFDLTDP--EVPSFYDQVHDSYILSVSTAYSDFEDTVVST--VAVDGYFYIFN-------P--KDI-ATTKTTVS 351 (524)
T ss_dssp TSEEEEEETTBC--SSCSEEEECSSSCEEEEEEECCTTSCCEEEE--EETTSEEEEEC-------G--GGH-HHHCEEEE
T ss_pred CCEEEEEECCCC--CCceEEeecccccEEEEEEEcCCCCCeEEEE--eccCCeEEEEE-------C--CCC-Cccccccc
Confidence 789999999762 24455677788888888 678888443333 33555555443 2 111 111111 1
Q ss_pred --CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-ceeEE--eCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEc
Q 013871 194 --KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILE--LGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDY 268 (434)
Q Consensus 194 --~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~-~~~~~--~~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~ 268 (434)
..+.|.+++|+|++..|+ ++..++.|++||++. ..+.. -|.+.|++++|||+|++|++|+ .||+|++||+
T Consensus 352 ~~~~~~v~~v~fsp~~~~l~--s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs---~Dgtv~lwd~ 426 (524)
T 2j04_B 352 RFRGSNLVPVVYCPQIYSYI--YSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGS---ADGSLIITNA 426 (524)
T ss_dssp ECSCCSCCCEEEETTTTEEE--EECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEE---TTTEEECCBS
T ss_pred ccccCcccceEeCCCcCeEE--EeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEE---CCCEEEEEec
Confidence 123578999999999877 567788999999864 33333 3889999999999999999998 5578988875
Q ss_pred cCC--------------------------------------------EEEEEeeCC--CceEEEECCCCC---EEEEEEc
Q 013871 269 VDG--------------------------------------------KQLGTTRAE--CSVTSEWSPDGR---YFMTATT 299 (434)
Q Consensus 269 ~~~--------------------------------------------~~i~~~~~~--~~~~~~wspdg~---~l~tas~ 299 (434)
..+ .++..+.+| .+..++|+|++. .+++|+.
T Consensus 427 ~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~ 506 (524)
T 2j04_B 427 ARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNS 506 (524)
T ss_dssp CSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECT
T ss_pred hHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhcc
Confidence 311 011112222 345599999965 8999888
Q ss_pred CCceeeCCcEEEEeecCceee
Q 013871 300 APRLQIDNGIKIFHHNGSLFF 320 (434)
Q Consensus 300 ~prl~~D~~i~iw~~~g~~~~ 320 (434)
|+.||||++.++..+
T Consensus 507 ------~g~vrlw~l~~~~~~ 521 (524)
T 2j04_B 507 ------AGLLTLEYLSLEHHH 521 (524)
T ss_dssp ------TSEEEEEECSCC---
T ss_pred ------CceEEEEEccccccc
Confidence 999999999987644
No 66
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.95 E-value=3.4e-25 Score=212.41 Aligned_cols=269 Identities=12% Similarity=0.116 Sum_probs=193.4
Q ss_pred EEEEEeecCcCCCCCCeeee-----cC-CCcEEEEec-CCeEEEEeCCCCCC-------ceeeeeecCCeeEEEEeCCCC
Q 013871 38 AVYQLFQKNMTKTTWPSIRF-----SS-DEAVACRMA-TNEIQFFDTTDFPK-------GILYRLRVPGVAAFEVSKAPG 103 (434)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~-----S~-d~~~la~~~-~~~i~v~~~~~~~~-------~~~~~~~~~~v~~~~~sp~~~ 103 (434)
+...+.++ ...+.+++| ++ |+++|++++ |++|++|++..... ......|...|.+++|+|+ +
T Consensus 13 ~~~~l~gH---~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~-~ 88 (343)
T 2xzm_R 13 KRGILEGH---SDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQE-N 88 (343)
T ss_dssp EEEEEECC---SSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSS-T
T ss_pred eeeeeccc---hhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCC-C
Confidence 34455554 367779999 76 999999985 67999999865321 1122345567999999998 4
Q ss_pred CeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeC
Q 013871 104 SHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTD 183 (434)
Q Consensus 104 ~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~ 183 (434)
.+++. .+.++.|++|++.+ ++.+.....|...+..+.|+|+|+.|+.. ..|.+.+.| ++.
T Consensus 89 ~~l~s-----~s~D~~v~lwd~~~---~~~~~~~~~h~~~v~~v~~sp~~~~l~s~---~~d~~i~~w---------d~~ 148 (343)
T 2xzm_R 89 CFAIS-----SSWDKTLRLWDLRT---GTTYKRFVGHQSEVYSVAFSPDNRQILSA---GAEREIKLW---------NIL 148 (343)
T ss_dssp TEEEE-----EETTSEEEEEETTS---SCEEEEEECCCSCEEEEEECSSTTEEEEE---ETTSCEEEE---------ESS
T ss_pred CEEEE-----EcCCCcEEEEECCC---CcEEEEEcCCCCcEEEEEECCCCCEEEEE---cCCCEEEEE---------ecc
Confidence 55543 35678999999988 77888888899999999999999986543 245444433 222
Q ss_pred Ccceeeee--cCCCCCeEEEEECcCC----------CEEEEEEccCCCeEEEEecccceeEEe--CCcCeeEEEECCCCC
Q 013871 184 GTHEGLVP--LRKEGPVHDVQWSYSG----------SEFAVVYGFMPASATIFNKKCRPILEL--GSGPYNTVRWNPKGK 249 (434)
Q Consensus 184 ~~~~~~v~--l~~~~~i~~v~wspdg----------~~~av~~g~~~~~v~l~d~~~~~~~~~--~~~~~~~i~~SP~g~ 249 (434)
+....... ..+...|.+++|+|++ ..|+ ++..|+.|++||.+......+ |...+++++|+|+|+
T Consensus 149 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~--s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~s~~g~ 226 (343)
T 2xzm_R 149 GECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFA--SVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGK 226 (343)
T ss_dssp SCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEE--EEETTSEEEEEETTTEEEEEEECCSSCEEEEEECTTSS
T ss_pred CCceeeeecccCCCceeeeeeeccccccccccCCCCCEEE--EEcCCCEEEEEcCCCceeEEEcCccccceEEEECCCCC
Confidence 22111111 1346789999999987 4566 577899999999876665554 788999999999999
Q ss_pred eEEEEecCCCCCeEEEEEccC-CEEEEEe-eCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc-eee--e---
Q 013871 250 FLCLAGFGNLPGDMAFWDYVD-GKQLGTT-RAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS-LFF--K--- 321 (434)
Q Consensus 250 ~l~~~~~~~~~g~i~iwd~~~-~~~i~~~-~~~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~-~~~--~--- 321 (434)
+|++++ .+|.|+|||+.+ ......+ ..+.+..++|+|++++|+++ . |++|+||++... ... .
T Consensus 227 ~l~sgs---~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~~la~~-~------d~~v~iw~~~~~~~~~~~~~~~ 296 (343)
T 2xzm_R 227 YIATGG---KDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVG-T------DQGVKIFNLMTQSKAPVCTIEA 296 (343)
T ss_dssp EEEEEE---TTCEEEEEESSCCSSCSEEEECSSCEEEEEECSSSCEEEEE-E------SSCEEEEESSSCCSCSEEECCC
T ss_pred EEEEEc---CCCeEEEEECCCCcccceeecCCCcEEEEEECCCCCEEEEE-C------CCCEEEEEeCCCCCCceEEeec
Confidence 999999 667999999843 3333344 33467779999999987654 5 889999998543 221 1
Q ss_pred ----------eecccceeeEEEcCCCCCCCC
Q 013871 322 ----------KMFDKLFQAEWKPVSPDKFGD 342 (434)
Q Consensus 322 ----------~~~~~~~~~~w~p~~~~~~~~ 342 (434)
.+...+..++|+|++..++..
T Consensus 297 ~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg 327 (343)
T 2xzm_R 297 EPITKAEGQKGKNPQCTSLAWNALGKKLFAG 327 (343)
T ss_dssp CSGGGBTTBCCSCCCEEEEEECSSSCCEEEE
T ss_pred CcchhhhhhcCCCCceEEEEECCCCCeEEEe
Confidence 123457899999999888765
No 67
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.95 E-value=7.4e-26 Score=214.58 Aligned_cols=252 Identities=12% Similarity=0.112 Sum_probs=176.6
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCc--EEEEEeecCcCCCCCCeeeecC--CCcEEEEec-CCeEEEEe
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGE--AVYQLFQKNMTKTTWPSIRFSS--DEAVACRMA-TNEIQFFD 76 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~--~~~~~~~~~~~~~~~~~~~~S~--d~~~la~~~-~~~i~v~~ 76 (434)
|++++|||+|++|+|++ .|++|+|||+.++. .+..+..+ ...+.+++|++ ++++|++++ |++|++||
T Consensus 16 V~~v~~s~~g~~lasgs-----~D~~v~lwd~~~~~~~~~~~l~gH---~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd 87 (316)
T 3bg1_A 16 IHDAQMDYYGTRLATCS-----SDRSVKIFDVRNGGQILIADLRGH---EGPVWQVAWAHPMYGNILASCSYDRKVIIWR 87 (316)
T ss_dssp EEEEEECGGGCEEEEEE-----TTTEEEEEEEETTEEEEEEEEECC---SSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred EEEeeEcCCCCEEEEEe-----CCCeEEEEEecCCCcEEEEEEcCC---CccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence 78999999999999999 89999999998875 34566554 36677999986 488888874 78999999
Q ss_pred CCCCCCcee--eeeecCCeeEEEEeCCC-CCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCC
Q 013871 77 TTDFPKGIL--YRLRVPGVAAFEVSKAP-GSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGS 153 (434)
Q Consensus 77 ~~~~~~~~~--~~~~~~~v~~~~~sp~~-~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G 153 (434)
+........ ...|...|.+++|+|+. +.+++. .+.++.|++|++..............|...+..+.|+|++
T Consensus 88 ~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~las-----gs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 162 (316)
T 3bg1_A 88 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILAC-----GSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAV 162 (316)
T ss_dssp CSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEE-----ECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCC
T ss_pred CCCCcceEEEEccCCCCceEEEEECCCCCCcEEEE-----EcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEcccc
Confidence 876432122 22355679999999984 345553 3567899999987521001122233455566677777764
Q ss_pred CeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccc----
Q 013871 154 TGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR---- 229 (434)
Q Consensus 154 ~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~---- 229 (434)
..-.++ . ...+. ..++++.|+ +|..|+.|++||++..
T Consensus 163 ~~~~~~-------------------~-~~~~~-----------------~~~~~~~l~--sgs~D~~v~lWd~~~~~~~~ 203 (316)
T 3bg1_A 163 VPGSLI-------------------D-HPSGQ-----------------KPNYIKRFA--SGGCDNLIKLWKEEEDGQWK 203 (316)
T ss_dssp CC--------------------------CCSC-----------------CCCCCCBEE--CCBTTSBCCEEEECTTSCEE
T ss_pred CCcccc-------------------c-ccccc-----------------CccccceEE--EecCCCeEEEEEeCCCCccc
Confidence 310000 0 00000 012345666 6888999999998632
Q ss_pred eeEEe--CCcCeeEEEECCCC----CeEEEEecCCCCCeEEEEEccCC-------EEEEEeeCCCceEEEECCCCCEEEE
Q 013871 230 PILEL--GSGPYNTVRWNPKG----KFLCLAGFGNLPGDMAFWDYVDG-------KQLGTTRAECSVTSEWSPDGRYFMT 296 (434)
Q Consensus 230 ~~~~~--~~~~~~~i~~SP~g----~~l~~~~~~~~~g~i~iwd~~~~-------~~i~~~~~~~~~~~~wspdg~~l~t 296 (434)
.+..+ |...+++++|+|++ ++|++++ .||+|+|||+.+. +.+..+ ...+..++|+|+|++|++
T Consensus 204 ~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s---~D~~v~iw~~~~~~~~~~~~~~~~~~-~~~v~~v~~sp~g~~las 279 (316)
T 3bg1_A 204 EEQKLEAHSDWVRDVAWAPSIGLPTSTIASCS---QDGRVFIWTCDDASSNTWSPKLLHKF-NDVVWHVSWSITANILAV 279 (316)
T ss_dssp EEECCBCCSSCEEEEECCCCSSCSCCEEEEEE---TTCEEEEEECSSTTCCCCBCCEEEEC-SSCEEEEEECTTTCCEEE
T ss_pred eeeecccCCCceEEEEecCCCCCCCceEEEEc---CCCeEEEEEccCccccchhhhhhhcC-CCcEEEEEEcCCCCEEEE
Confidence 34444 78899999999997 7899998 5679999998762 223222 236677999999999999
Q ss_pred EEcCCceeeCCcEEEEeec
Q 013871 297 ATTAPRLQIDNGIKIFHHN 315 (434)
Q Consensus 297 as~~prl~~D~~i~iw~~~ 315 (434)
++. |+.|+||+..
T Consensus 280 ~~~------D~~v~lw~~~ 292 (316)
T 3bg1_A 280 SGG------DNKVTLWKES 292 (316)
T ss_dssp EES------SSCEEEEEEC
T ss_pred EcC------CCeEEEEEEC
Confidence 999 9999999974
No 68
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.94 E-value=3.2e-25 Score=210.44 Aligned_cols=247 Identities=11% Similarity=0.181 Sum_probs=179.3
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCc----EEEEEeecCcCCCCCCeeeecC--CCcEEEEec-CCeEEE
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGE----AVYQLFQKNMTKTTWPSIRFSS--DEAVACRMA-TNEIQF 74 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~----~~~~~~~~~~~~~~~~~~~~S~--d~~~la~~~-~~~i~v 74 (434)
|++|+|||+|++|++++ .|+.|+|||+.++. .+..+..+ ...+.+++|+| |+++|+++. |+.|++
T Consensus 14 v~~~~~~~~~~~l~~~~-----~dg~i~iw~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~d~~~l~s~~~dg~v~v 85 (351)
T 3f3f_A 14 VHDVVYDFYGRHVATCS-----SDQHIKVFKLDKDTSNWELSDSWRAH---DSSIVAIDWASPEYGRIIASASYDKTVKL 85 (351)
T ss_dssp EEEEEECSSSSEEEEEE-----TTSEEEEEEECSSSCCEEEEEEEECC---SSCEEEEEECCGGGCSEEEEEETTSCEEE
T ss_pred eeEEEEcCCCCEEEEee-----CCCeEEEEECCCCCCcceecceeccC---CCcEEEEEEcCCCCCCEEEEEcCCCeEEE
Confidence 78999999999999999 89999999998773 45555543 36777999999 689998885 679999
Q ss_pred EeCCCCCC---------ceeeeeecCCeeEEEEeCCC-CCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccce
Q 013871 75 FDTTDFPK---------GILYRLRVPGVAAFEVSKAP-GSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCST 144 (434)
Q Consensus 75 ~~~~~~~~---------~~~~~~~~~~v~~~~~sp~~-~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~ 144 (434)
||+..... ......+...|.+++|+|+. +..+++ .+.++.|++|++.. .+.+.......
T Consensus 86 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~-----~~~dg~v~iwd~~~---~~~~~~~~~~~--- 154 (351)
T 3f3f_A 86 WEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLAC-----LGNDGILRLYDALE---PSDLRSWTLTS--- 154 (351)
T ss_dssp EEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEE-----EETTCEEEEEECSS---TTCTTCCEEEE---
T ss_pred EecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEE-----ecCCCcEEEecCCC---hHHhccccccc---
Confidence 99876431 11222345679999999983 334443 24567999999976 33322111000
Q ss_pred eEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcC---CCEEEEEEccCCCeE
Q 013871 145 VQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYS---GSEFAVVYGFMPASA 221 (434)
Q Consensus 145 ~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspd---g~~~av~~g~~~~~v 221 (434)
.+..+ ...+..+...+.+++|+|+ +..|++ +..++.+
T Consensus 155 -------------------------------~~~~~-------~~~~~~~~~~~~~~~~~p~~~~~~~l~~--~~~~~~~ 194 (351)
T 3f3f_A 155 -------------------------------EMKVL-------SIPPANHLQSDFCLSWCPSRFSPEKLAV--SALEQAI 194 (351)
T ss_dssp -------------------------------EEESC-------SCCCSSCSCCCEEEEECCCSSSCCEEEE--EETTEEE
T ss_pred -------------------------------ccccc-------ccccCCcccceeEEEeccCCCCCcEEEE--ecCCCcE
Confidence 00000 0011123578899999997 777774 6667788
Q ss_pred EEEecccce---eEEe--CCcCeeEEEECCCC----CeEEEEecCCCCCeEEEEEccCC---------------------
Q 013871 222 TIFNKKCRP---ILEL--GSGPYNTVRWNPKG----KFLCLAGFGNLPGDMAFWDYVDG--------------------- 271 (434)
Q Consensus 222 ~l~d~~~~~---~~~~--~~~~~~~i~~SP~g----~~l~~~~~~~~~g~i~iwd~~~~--------------------- 271 (434)
.+|+..... +..+ |...+++++|+|+| ++|++++ .+|.|++||+.++
T Consensus 195 ~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (351)
T 3f3f_A 195 IYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGC---KDGRIRIFKITEKLSPLASEESLTNSNMFDNSAD 271 (351)
T ss_dssp EEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEE---TTSCEEEEEEEECC--------------------
T ss_pred EEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEc---CCCeEEEEeCCCCcCccccCCcccceeccCCCcc
Confidence 777665433 3344 68899999999999 7899998 6679999999864
Q ss_pred -------------------------EEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecC
Q 013871 272 -------------------------KQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG 316 (434)
Q Consensus 272 -------------------------~~i~~~~~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g 316 (434)
+.+..+.+| .+..++|+|||++|++++. |+.|+||+++.
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~------dg~v~iw~~~~ 337 (351)
T 3f3f_A 272 VDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGD------DGKVRLWKATY 337 (351)
T ss_dssp -------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEET------TSCEEEEEECT
T ss_pred cccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecC------CCcEEEEecCc
Confidence 566667665 5667999999999999999 99999999964
No 69
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.94 E-value=2.3e-24 Score=214.72 Aligned_cols=288 Identities=11% Similarity=0.125 Sum_probs=204.6
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCC
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDF 80 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~ 80 (434)
+.++.| ++++|++++ .|+.|+|||+.+++.+..+..+. ..+.+++|++++ +++++ .|++|++||+.+.
T Consensus 125 ~~~~~~--~~~~l~sgs-----~dg~i~vwd~~~~~~~~~~~~h~---~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~ 193 (464)
T 3v7d_B 125 ITCLQF--EDNYVITGA-----DDKMIRVYDSINKKFLLQLSGHD---GGVWALKYAHGG-ILVSGSTDRTVRVWDIKKG 193 (464)
T ss_dssp EEEEEE--ETTEEEEEE-----TTSCEEEEETTTTEEEEEECCCS---SCEEEEEECSTT-EEEEEETTSCEEEEETTTT
T ss_pred EEEEEE--CCCEEEEEc-----CCCcEEEEECCCCcEEEEEeCCC---cCEEEEEEcCCC-EEEEEeCCCCEEEEECCCC
Confidence 345555 678999999 89999999999999998887643 677799999999 55555 6789999999875
Q ss_pred CCceeeeeecCCeeEEEEeCCCC-CeEEEEecCCCCCCceEEEEEcCCCCCCC--------------------ceeeeee
Q 013871 81 PKGILYRLRVPGVAAFEVSKAPG-SHVAVFVPESKGSPASVQIYACGKDLQSQ--------------------PLARRSF 139 (434)
Q Consensus 81 ~~~~~~~~~~~~v~~~~~sp~~~-~~ia~~~~~~~~~~~~v~i~~~~~~~~~~--------------------~i~~~~~ 139 (434)
........+...|..+.|++..+ ..+++ .+.++.|++|++....... .+.....
T Consensus 194 ~~~~~~~~h~~~v~~l~~~~~~~~~~l~s-----~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (464)
T 3v7d_B 194 CCTHVFEGHNSTVRCLDIVEYKNIKYIVT-----GSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRG 268 (464)
T ss_dssp EEEEEECCCSSCEEEEEEEESSSCEEEEE-----EETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECC
T ss_pred cEEEEECCCCCccEEEEEecCCCCCEEEE-----EcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccC
Confidence 54344445667899999996433 44443 2456789999998632100 0222333
Q ss_pred cccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCC
Q 013871 140 FRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPA 219 (434)
Q Consensus 140 ~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~ 219 (434)
+...+..+ +++|..+++.. .|.. +..+++...........+...|.+++|+|+++.++ +|..++
T Consensus 269 ~~~~v~~~--~~~~~~l~~~~---~d~~---------i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~--sg~~dg 332 (464)
T 3v7d_B 269 HMASVRTV--SGHGNIVVSGS---YDNT---------LIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCI--SASMDT 332 (464)
T ss_dssp CSSCEEEE--EEETTEEEEEE---TTSC---------EEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEE--EEETTS
T ss_pred ccceEEEE--cCCCCEEEEEe---CCCe---------EEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEE--EEeCCC
Confidence 33344343 56677655432 3333 33334333322222223578999999999999988 578899
Q ss_pred eEEEEecc-cceeEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC-CceEEEECCCCCEEE
Q 013871 220 SATIFNKK-CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-CSVTSEWSPDGRYFM 295 (434)
Q Consensus 220 ~v~l~d~~-~~~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-~~~~~~wspdg~~l~ 295 (434)
.|++||++ +..+..+ |...+.++.|+ +++|++++ .+|.|++||+.+++........ .+..++|+|+|++|+
T Consensus 333 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s---~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 407 (464)
T 3v7d_B 333 TIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAA---ADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILV 407 (464)
T ss_dssp CEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEE---TTSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEE
T ss_pred cEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEe---CCCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEE
Confidence 99999996 4555555 78899999998 58999998 5679999999988766666544 455689999999998
Q ss_pred EEEcCCceeeCCcEEEEee-cCceeeee---ecccceeeEEE
Q 013871 296 TATTAPRLQIDNGIKIFHH-NGSLFFKK---MFDKLFQAEWK 333 (434)
Q Consensus 296 tas~~prl~~D~~i~iw~~-~g~~~~~~---~~~~~~~~~w~ 333 (434)
+++ |+.|+|||+ +|+++... +...++.+.|+
T Consensus 408 ~~~-------dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~ 442 (464)
T 3v7d_B 408 SGS-------ENQFNIYNLRSGKLVHANILKDADQIWSVNFK 442 (464)
T ss_dssp EEE-------TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE
T ss_pred Eec-------CCeEEEEECCCCcEEehhhccCCCcEEEEEec
Confidence 876 789999998 56666542 44578999997
No 70
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.94 E-value=3.5e-24 Score=203.32 Aligned_cols=266 Identities=14% Similarity=0.162 Sum_probs=197.6
Q ss_pred EEEeecCcCCCCCCeeeecCCC-cEEEEec-CCeEEEEeCCCCCCc-----eeeeeecCCeeEEEEeCCCCCeEEEEecC
Q 013871 40 YQLFQKNMTKTTWPSIRFSSDE-AVACRMA-TNEIQFFDTTDFPKG-----ILYRLRVPGVAAFEVSKAPGSHVAVFVPE 112 (434)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~S~d~-~~la~~~-~~~i~v~~~~~~~~~-----~~~~~~~~~v~~~~~sp~~~~~ia~~~~~ 112 (434)
.++.+ |...+.+++|+|++ ++|++++ |++|++|++...... .....|...|.++.|+|+ +.+++.
T Consensus 11 ~~l~g---H~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~d-g~~l~s---- 82 (319)
T 3frx_A 11 GTLEG---HNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTAD-GAYALS---- 82 (319)
T ss_dssp EEECC---CSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTT-SSEEEE----
T ss_pred EEEcc---ccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCC-CCEEEE----
Confidence 34544 34777799999965 7888874 689999998643221 123345668999999998 455543
Q ss_pred CCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeec
Q 013871 113 SKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL 192 (434)
Q Consensus 113 ~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l 192 (434)
.+.++.|++|++.+ ++.+.....|...+..+.|+|+|..|+.. ..|.+.+.|. +.+. ......
T Consensus 83 -~s~D~~v~~wd~~~---~~~~~~~~~h~~~v~~~~~~~~~~~l~s~---s~D~~i~vwd---------~~~~-~~~~~~ 145 (319)
T 3frx_A 83 -ASWDKTLRLWDVAT---GETYQRFVGHKSDVMSVDIDKKASMIISG---SRDKTIKVWT---------IKGQ-CLATLL 145 (319)
T ss_dssp -EETTSEEEEEETTT---TEEEEEEECCSSCEEEEEECTTSCEEEEE---ETTSCEEEEE---------TTSC-EEEEEC
T ss_pred -EeCCCEEEEEECCC---CCeeEEEccCCCcEEEEEEcCCCCEEEEE---eCCCeEEEEE---------CCCC-eEEEEe
Confidence 35678999999988 77888888899999999999999976542 3555554332 2222 222223
Q ss_pred CCCCCeEEEEECcCCC------EEEEEEccCCCeEEEEecccce-eEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeE
Q 013871 193 RKEGPVHDVQWSYSGS------EFAVVYGFMPASATIFNKKCRP-ILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDM 263 (434)
Q Consensus 193 ~~~~~i~~v~wspdg~------~~av~~g~~~~~v~l~d~~~~~-~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i 263 (434)
.+...|.++.|+|.+. .++ ++..|+.|++||++... ...+ |...+++++|+|+|++|++++ .+|.|
T Consensus 146 ~h~~~v~~~~~~~~~~~~~~~~~l~--s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~---~dg~i 220 (319)
T 3frx_A 146 GHNDWVSQVRVVPNEKADDDSVTII--SAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAG---KDGEI 220 (319)
T ss_dssp CCSSCEEEEEECCC------CCEEE--EEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEE---TTCEE
T ss_pred ccCCcEEEEEEccCCCCCCCccEEE--EEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEe---CCCeE
Confidence 4578999999999643 454 68889999999997543 3344 788999999999999999999 66799
Q ss_pred EEEEccCCEEEEEeeCC-CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceeeee-----------ecccceeeE
Q 013871 264 AFWDYVDGKQLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKK-----------MFDKLFQAE 331 (434)
Q Consensus 264 ~iwd~~~~~~i~~~~~~-~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~~~~~-----------~~~~~~~~~ 331 (434)
+|||+.+++.+..+..+ .+..++|+|||.+|++++ ++++++|+++...+... +...+..++
T Consensus 221 ~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~-------~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 293 (319)
T 3frx_A 221 MLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAAT-------ATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLA 293 (319)
T ss_dssp EEEETTTTEEEEEEECCSCEEEEEECSSSSEEEEEE-------TTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEE
T ss_pred EEEECCCCcEEEEecCCCcEEEEEEcCCCCEEEEEc-------CCCcEEEEeCcCeeeeccCccccccccCcCcceeEEE
Confidence 99999999998888776 556699999999998876 66799999976543221 123467899
Q ss_pred EEcCCCCCCCC
Q 013871 332 WKPVSPDKFGD 342 (434)
Q Consensus 332 w~p~~~~~~~~ 342 (434)
|+|++..++..
T Consensus 294 ~spdg~~l~sg 304 (319)
T 3frx_A 294 WSADGQTLFAG 304 (319)
T ss_dssp ECTTSSEEEEE
T ss_pred ECCCCCEEEEe
Confidence 99999888765
No 71
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.94 E-value=1.8e-24 Score=205.99 Aligned_cols=268 Identities=10% Similarity=0.069 Sum_probs=194.2
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCc---EEEEEeecCcCCCCCCeeeecCCCc-EEEEec-CCeEEEEe
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGE---AVYQLFQKNMTKTTWPSIRFSSDEA-VACRMA-TNEIQFFD 76 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~---~~~~~~~~~~~~~~~~~~~~S~d~~-~la~~~-~~~i~v~~ 76 (434)
|++++|||+|++|++++ .|+.|+|||+.+++ .+..+..+ ...+.+++|+||++ +|+++. ++.|++|+
T Consensus 14 v~~~~~s~~~~~l~~~~-----~d~~v~iw~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd 85 (342)
T 1yfq_A 14 ISDIKIIPSKSLLLITS-----WDGSLTVYKFDIQAKNVDLLQSLRY---KHPLLCCNFIDNTDLQIYVGTVQGEILKVD 85 (342)
T ss_dssp EEEEEEEGGGTEEEEEE-----TTSEEEEEEEETTTTEEEEEEEEEC---SSCEEEEEEEESSSEEEEEEETTSCEEEEC
T ss_pred EEEEEEcCCCCEEEEEc-----CCCeEEEEEeCCCCccccceeeeec---CCceEEEEECCCCCcEEEEEcCCCeEEEEE
Confidence 78999999999999999 89999999998887 23333333 36777999999999 888874 68999999
Q ss_pred C-CCCCCceeeee--ecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCC------CCceeeeeecccceeEE
Q 013871 77 T-TDFPKGILYRL--RVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQ------SQPLARRSFFRCSTVQL 147 (434)
Q Consensus 77 ~-~~~~~~~~~~~--~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~------~~~i~~~~~~~~~~~~~ 147 (434)
+ ..... ..... +...|.++.|+| +..+++ .+.++.|++|++..... .+++.... +...+..+
T Consensus 86 ~~~~~~~-~~~~~~~~~~~v~~l~~~~--~~~l~s-----~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~ 156 (342)
T 1yfq_A 86 LIGSPSF-QALTNNEANLGICRICKYG--DDKLIA-----ASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTM 156 (342)
T ss_dssp SSSSSSE-EECBSCCCCSCEEEEEEET--TTEEEE-----EETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEE
T ss_pred eccCCce-EeccccCCCCceEEEEeCC--CCEEEE-----EcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEE
Confidence 9 76443 33444 666899999999 444443 24567999999865100 12222333 66778899
Q ss_pred EECCCCCeEEEEEEecccccCceeecceeEEEEeeCC-cc--eeeeecCCCCCeEEEEECc-CCCEEEEEEccCCCeEEE
Q 013871 148 NWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDG-TH--EGLVPLRKEGPVHDVQWSY-SGSEFAVVYGFMPASATI 223 (434)
Q Consensus 148 ~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~-~~--~~~v~l~~~~~i~~v~wsp-dg~~~av~~g~~~~~v~l 223 (434)
.|++++ +++. . .|.. ++.++... .. .......+...|.+++|+| +++.|+ ++..++.+.+
T Consensus 157 ~~~~~~--l~~~-~--~d~~---------i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~--~~~~dg~i~i 220 (342)
T 1yfq_A 157 DTNSSR--LIVG-M--NNSQ---------VQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYA--CSSIDGRVAV 220 (342)
T ss_dssp EECSSE--EEEE-E--STTE---------EEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEE--EEETTSEEEE
T ss_pred EecCCc--EEEE-e--CCCe---------EEEEECCccccccceeeecCCCCceeEEEECCCCCCEEE--EEecCCcEEE
Confidence 999987 3332 1 2222 34444433 11 2223344578999999999 999888 4677899999
Q ss_pred Eeccc-------ceeEEe--CCc---------CeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC-C--c
Q 013871 224 FNKKC-------RPILEL--GSG---------PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-C--S 282 (434)
Q Consensus 224 ~d~~~-------~~~~~~--~~~---------~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-~--~ 282 (434)
||++. .....+ +.. .+++++|+|+|++|++++ .+|.|++||+.+++.+..+..+ . +
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~---~dg~i~vwd~~~~~~~~~~~~~h~~~v 297 (342)
T 1yfq_A 221 EFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAG---SDGIISCWNLQTRKKIKNFAKFNEDSV 297 (342)
T ss_dssp EECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEE---TTSCEEEEETTTTEEEEECCCCSSSEE
T ss_pred EEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEec---CCceEEEEcCccHhHhhhhhcccCCCc
Confidence 98853 333333 433 899999999999999998 5679999999999999988875 3 3
Q ss_pred eEEEECCCCCEEEEEEcCCceeeCCc-EEEEe
Q 013871 283 VTSEWSPDGRYFMTATTAPRLQIDNG-IKIFH 313 (434)
Q Consensus 283 ~~~~wspdg~~l~tas~~prl~~D~~-i~iw~ 313 (434)
..++ |||++|++++. |+. .+.|.
T Consensus 298 ~~~~--~~~~~l~s~s~------Dg~~~~~~~ 321 (342)
T 1yfq_A 298 VKIA--CSDNILCLATS------DDTFKTNAA 321 (342)
T ss_dssp EEEE--ECSSEEEEEEE------CTHHHHCSS
T ss_pred eEec--CCCCeEEEEec------CCccccccc
Confidence 3466 99999999999 887 44444
No 72
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.94 E-value=5.6e-24 Score=204.09 Aligned_cols=269 Identities=9% Similarity=0.107 Sum_probs=199.3
Q ss_pred CCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcC
Q 013871 48 TKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACG 126 (434)
Q Consensus 48 ~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~ 126 (434)
|...+.+++|+||+++|+++. ++.|++|++.+.........+...|.+++|+|+ +..+++. +.++.|++|++.
T Consensus 31 h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~-----~~dg~i~iwd~~ 104 (369)
T 3zwl_B 31 HERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCF-TKYCVTG-----SADYSIKLWDVS 104 (369)
T ss_dssp CSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTT-SSEEEEE-----ETTTEEEEEETT
T ss_pred eeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCC-CCEEEEE-----eCCCeEEEEECC
Confidence 347788999999999999985 679999999876544444456678999999998 4555432 446799999998
Q ss_pred CCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCccee---------eeecCCCC-
Q 013871 127 KDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEG---------LVPLRKEG- 196 (434)
Q Consensus 127 ~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~---------~v~l~~~~- 196 (434)
+ ++.+.... +...+..+.|+|+|+.+++.... .. ...|...+|.+........ .....+.+
T Consensus 105 ~---~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~-~~----~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (369)
T 3zwl_B 105 N---GQCVATWK-SPVPVKRVEFSPCGNYFLAILDN-VM----KNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGL 175 (369)
T ss_dssp T---CCEEEEEE-CSSCEEEEEECTTSSEEEEEECC-BT----TBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTC
T ss_pred C---CcEEEEee-cCCCeEEEEEccCCCEEEEecCC-cc----CCCCEEEEEEecCCccceeecccccceeeeccCCcCc
Confidence 7 66666665 77788999999999987765321 00 0012222343332221100 00111223
Q ss_pred -CeEEEEECcCCCEEEEEEccCCCeEEEEeccc--ceeEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC
Q 013871 197 -PVHDVQWSYSGSEFAVVYGFMPASATIFNKKC--RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG 271 (434)
Q Consensus 197 -~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~--~~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~ 271 (434)
.+.+++|+|+++.|++ +..++.|.+||++. ..+..+ +...+.+++|+|+|++|++++ .+|.|.+||+.++
T Consensus 176 ~~~~~~~~~~~~~~l~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d~~i~v~d~~~~ 250 (369)
T 3zwl_B 176 DAATVAGWSTKGKYIIA--GHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSS---RDTNSFLVDVSTL 250 (369)
T ss_dssp CCEEEEEECGGGCEEEE--EETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEE---TTSEEEEEETTTC
T ss_pred cceeEEEEcCCCCEEEE--EcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEec---CCceEEEEECCCC
Confidence 8999999999998884 67789999999975 444444 788999999999999999998 5679999999999
Q ss_pred EEEEEeeCC-CceEEEECCCCCEEEEEEcCCceeeCC--------------cEEEEeec-Cceeeee--ecccceeeEEE
Q 013871 272 KQLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDN--------------GIKIFHHN-GSLFFKK--MFDKLFQAEWK 333 (434)
Q Consensus 272 ~~i~~~~~~-~~~~~~wspdg~~l~tas~~prl~~D~--------------~i~iw~~~-g~~~~~~--~~~~~~~~~w~ 333 (434)
+.+..+... .+..++|+|+|+++++++. ++ .+++|+.. ++.+... +...+..+.|.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s 324 (369)
T 3zwl_B 251 QVLKKYETDCPLNTAVITPLKEFIILGGG------QEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAIS 324 (369)
T ss_dssp CEEEEEECSSCEEEEEECSSSSEEEEEEC------CC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEEC
T ss_pred ceeeeecCCCCceeEEecCCCceEEEeec------CCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEEC
Confidence 888888765 5566999999999999998 66 79999984 4444333 45679999999
Q ss_pred cCCCCCCCC
Q 013871 334 PVSPDKFGD 342 (434)
Q Consensus 334 p~~~~~~~~ 342 (434)
|++..++..
T Consensus 325 ~~~~~l~s~ 333 (369)
T 3zwl_B 325 PQGTSYASG 333 (369)
T ss_dssp TTSSEEEEE
T ss_pred CCCCEEEEE
Confidence 998877765
No 73
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.94 E-value=8.8e-24 Score=205.46 Aligned_cols=272 Identities=11% Similarity=0.081 Sum_probs=195.6
Q ss_pred EEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEE-EEe-cCCeEEEEeCCCCCCceeeeeec
Q 013871 13 IIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVA-CRM-ATNEIQFFDTTDFPKGILYRLRV 90 (434)
Q Consensus 13 ~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~l-a~~-~~~~i~v~~~~~~~~~~~~~~~~ 90 (434)
.+++.+ .|+.|++||+.+++.+..+..+ ..+.+++|+||++++ +++ .+++|++||..+......... .
T Consensus 4 l~vs~~-----~d~~v~v~d~~~~~~~~~~~~~----~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~-~ 73 (391)
T 1l0q_A 4 AYIANS-----ESDNISVIDVTSNKVTATIPVG----SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPA-G 73 (391)
T ss_dssp EEEEET-----TTTEEEEEETTTTEEEEEEECS----SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEEC-S
T ss_pred EEEEcC-----CCCEEEEEECCCCeEEEEeecC----CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEEC-C
Confidence 445555 7899999999999998887765 335589999999977 444 578999999977543222222 3
Q ss_pred CCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCce
Q 013871 91 PGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQS 170 (434)
Q Consensus 91 ~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~ 170 (434)
..+..++|+|++ ..+++. ....+.|++|++.+ ++.+..... ......+.|+|+|+.|++... .+.
T Consensus 74 ~~v~~~~~spdg-~~l~~~----~~~~~~v~v~d~~~---~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~--~~~---- 138 (391)
T 1l0q_A 74 SSPQGVAVSPDG-KQVYVT----NMASSTLSVIDTTS---NTVAGTVKT-GKSPLGLALSPDGKKLYVTNN--GDK---- 138 (391)
T ss_dssp SSEEEEEECTTS-SEEEEE----ETTTTEEEEEETTT---TEEEEEEEC-SSSEEEEEECTTSSEEEEEET--TTT----
T ss_pred CCccceEECCCC-CEEEEE----ECCCCEEEEEECCC---CeEEEEEeC-CCCcceEEECCCCCEEEEEeC--CCC----
Confidence 378999999984 444332 23347899999987 555555443 346678999999998765432 121
Q ss_pred eecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccccee-EEe-CCcCeeEEEECCCC
Q 013871 171 YYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPI-LEL-GSGPYNTVRWNPKG 248 (434)
Q Consensus 171 ~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~-~~~-~~~~~~~i~~SP~g 248 (434)
.++.++.... .....+.....+..++|+|+|+.+++ ++..++.|.+||++.... ..+ +...+.+++|+|+|
T Consensus 139 -----~v~~~d~~~~-~~~~~~~~~~~~~~~~~~~dg~~l~~-~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g 211 (391)
T 1l0q_A 139 -----TVSVINTVTK-AVINTVSVGRSPKGIAVTPDGTKVYV-ANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEG 211 (391)
T ss_dssp -----EEEEEETTTT-EEEEEEECCSSEEEEEECTTSSEEEE-EETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTS
T ss_pred -----EEEEEECCCC-cEEEEEecCCCcceEEECCCCCEEEE-EeCCCCEEEEEECCCCeEEEEEecCCCccceEECCCC
Confidence 3555555443 22233333567799999999998866 467788999999975443 333 45678899999999
Q ss_pred CeEEEEecCCCCCeEEEEEccCCEEEEEeeCC-CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec-Cceeee
Q 013871 249 KFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLFFK 321 (434)
Q Consensus 249 ~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~-g~~~~~ 321 (434)
++|++++.+..++.|.+||+.+++.+..+..+ .+..++|+|||++|++++.. |+.|++||+. |+++..
T Consensus 212 ~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~s~~~-----d~~v~v~d~~~~~~~~~ 281 (391)
T 1l0q_A 212 TKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSF-----XNTVSVIDTATNTITAT 281 (391)
T ss_dssp SEEEEEEECSSCCEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETT-----TTEEEEEETTTTEEEEE
T ss_pred CEEEEEecCcCCCcEEEEECCCCeEEEEEecCCCccEEEEccCCCEEEEEcCC-----CCEEEEEECCCCcEEEE
Confidence 99999875334579999999999988888766 55569999999998655433 9999999995 454443
No 74
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.94 E-value=2.2e-25 Score=239.78 Aligned_cols=220 Identities=11% Similarity=0.079 Sum_probs=150.5
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCC
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDF 80 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~ 80 (434)
|++|+|||+|++||+++ .|+.|+||+..+++.+..+. +...+.+++|+| +++|+++ .|++|++||+...
T Consensus 20 V~~lafspdg~~lAsgs-----~Dg~I~lw~~~~~~~~~~~~----~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~ 89 (902)
T 2oaj_A 20 PIAAAFDFTQNLLAIAT-----VTGEVHIYGQQQVEVVIKLE----DRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQ 89 (902)
T ss_dssp EEEEEEETTTTEEEEEE-----TTSEEEEECSTTCEEEEECS----SCCCEEEEEEET-TTEEEEEETTCEEEEEETTTC
T ss_pred cEEEEECCCCCEEEEEe-----CCCEEEEEeCCCcEEEEEcC----CCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCC
Confidence 78999999999999999 89999999998887655543 236677999999 8888877 5689999999875
Q ss_pred CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCce-----------eeeeecccceeEEEE
Q 013871 81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPL-----------ARRSFFRCSTVQLNW 149 (434)
Q Consensus 81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i-----------~~~~~~~~~~~~~~w 149 (434)
....... +...|.+++|+|+ +..+++ +..++.|++|++.. .... .....|...+.++.|
T Consensus 90 ~~~~~~~-~~~~V~~v~~sp~-g~~l~s-----gs~dg~V~lwd~~~---~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~ 159 (902)
T 2oaj_A 90 KVLTTVF-VPGKITSIDTDAS-LDWMLI-----GLQNGSMIVYDIDR---DQLSSFKLDNLQKSSFFPAARLSPIVSIQW 159 (902)
T ss_dssp SEEEEEE-CSSCEEEEECCTT-CSEEEE-----EETTSCEEEEETTT---TEEEEEEECCHHHHHTCSSSCCCCCCEEEE
T ss_pred cEEEEEc-CCCCEEEEEECCC-CCEEEE-----EcCCCcEEEEECCC---CccccceeccccccccccccCCCCeEEEEE
Confidence 4322222 3457999999999 455554 24567899999976 3322 112335667889999
Q ss_pred CCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecC-------------------CCCCeEEEEECcCCCEE
Q 013871 150 NRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR-------------------KEGPVHDVQWSYSGSEF 210 (434)
Q Consensus 150 s~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~-------------------~~~~i~~v~wspdg~~~ 210 (434)
+|++..+++.+. .|... .| ++... .....+. +...|.+++|+|+|+.|
T Consensus 160 sp~~~~~l~~g~--~dg~v-lW---------d~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~l 226 (902)
T 2oaj_A 160 NPRDIGTVLISY--EYVTL-TY---------SLVEN-EIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHI 226 (902)
T ss_dssp ETTEEEEEEEEC--SSCEE-EE---------ETTTT-EEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEE
T ss_pred ccCCCCEEEEEe--CCCcE-EE---------ECCCC-ceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEE
Confidence 997654444332 33332 33 22222 1111111 13679999999999999
Q ss_pred EEEEccCCCeEEEEeccc-ceeEE--e-----C-------------CcCeeEEEEC----CCC-CeEEEEec
Q 013871 211 AVVYGFMPASATIFNKKC-RPILE--L-----G-------------SGPYNTVRWN----PKG-KFLCLAGF 256 (434)
Q Consensus 211 av~~g~~~~~v~l~d~~~-~~~~~--~-----~-------------~~~~~~i~~S----P~g-~~l~~~~~ 256 (434)
+ ++..|+.|++||++. +.+.. + | ...+++++|+ |++ .+|++++.
T Consensus 227 a--sgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~ 296 (902)
T 2oaj_A 227 I--TIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKS 296 (902)
T ss_dssp E--EEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEEC
T ss_pred E--EEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCC
Confidence 8 678899999999964 43331 2 2 3368999994 554 45565543
No 75
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.5e-25 Score=221.55 Aligned_cols=274 Identities=9% Similarity=0.019 Sum_probs=188.8
Q ss_pred cceEEecC-CCcEEEEEecCCCCCCCcEEEEEcCC---CcE---EEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEE
Q 013871 2 LLLLTCLR-VGLIIQTFQKSSTPQEKNVILWKTET---GEA---VYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQ 73 (434)
Q Consensus 2 V~~l~fSP-~g~~L~t~~~~~~~~d~~v~iWd~~~---g~~---~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~ 73 (434)
|++|+||| +|++|+|++ .|+.|+|||+.+ +.. ...+. |...+.+++|+|++++|+++. |+.|+
T Consensus 66 V~~~~~s~~~~~~l~s~s-----~dg~v~vwd~~~~~~~~~~~~~~~~~----h~~~v~~~~~~~~~~~l~s~s~dg~i~ 136 (437)
T 3gre_A 66 ITSSAVSPGETPYLITGS-----DQGVIKIWNLKEIIVGEVYSSSLTYD----CSSTVTQITMIPNFDAFAVSSKDGQII 136 (437)
T ss_dssp EEEEEEECSSSCEEEEEE-----TTSEEEEEEHHHHHTTCCCSCSEEEE----CSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred eEEEEECCCCCCEEEEec-----CCceEEEeECcccccCcccceeeecc----CCCCEEEEEEeCCCCEEEEEeCCCEEE
Confidence 78999999 999999999 899999999977 432 22332 236777999999999999885 68999
Q ss_pred EEeCC---CCCCceeeeeecCCeeEEEEeCC--CCCeEEEE---ecC-----CCCCCceEEEEEcCCCCCCCceeeeee-
Q 013871 74 FFDTT---DFPKGILYRLRVPGVAAFEVSKA--PGSHVAVF---VPE-----SKGSPASVQIYACGKDLQSQPLARRSF- 139 (434)
Q Consensus 74 v~~~~---~~~~~~~~~~~~~~v~~~~~sp~--~~~~ia~~---~~~-----~~~~~~~v~i~~~~~~~~~~~i~~~~~- 139 (434)
+||+. .... ........+..+.++|+ ....+++. .++ ..+.++.|++|++.+ .+.+.....
T Consensus 137 vwd~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~---~~~~~~~~~~ 211 (437)
T 3gre_A 137 VLKVNHYQQESE--VKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRT---LERLQIIENS 211 (437)
T ss_dssp EEEEEEEEETTE--EEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTT---CCEEEEEECC
T ss_pred EEEeccccCCce--eeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCC---CeeeEEEccC
Confidence 99984 2221 12222224555665551 11111111 000 134568999999988 777777776
Q ss_pred -cccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcc-eeeeecCCCCCeEEEEECc----CCCEEEEE
Q 013871 140 -FRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH-EGLVPLRKEGPVHDVQWSY----SGSEFAVV 213 (434)
Q Consensus 140 -~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~-~~~v~l~~~~~i~~v~wsp----dg~~~av~ 213 (434)
+...+..+.|+|+|..|+... .|...+ .+++.... ...+.+.+..+|.+++|+| ++..|+
T Consensus 212 ~h~~~v~~~~~s~~~~~l~s~~---~dg~i~---------iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~-- 277 (437)
T 3gre_A 212 PRHGAVSSICIDEECCVLILGT---TRGIID---------IWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVV-- 277 (437)
T ss_dssp GGGCCEEEEEECTTSCEEEEEE---TTSCEE---------EEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEE--
T ss_pred CCCCceEEEEECCCCCEEEEEc---CCCeEE---------EEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEE--
Confidence 778899999999999876532 343333 33332221 1222335567899997775 455555
Q ss_pred EccCCCeEEEEeccc-ceeEEe----------------------------CCcCeeEEEECCCCCeEEEEecCCCCCeEE
Q 013871 214 YGFMPASATIFNKKC-RPILEL----------------------------GSGPYNTVRWNPKGKFLCLAGFGNLPGDMA 264 (434)
Q Consensus 214 ~g~~~~~v~l~d~~~-~~~~~~----------------------------~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~ 264 (434)
++..|+.|++||++. ..+..+ +...+++++|+ ++++|++++ .+|.|+
T Consensus 278 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~---~d~~i~ 353 (437)
T 3gre_A 278 GGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDE---ATSSIV 353 (437)
T ss_dssp EESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEG---GGTEEE
T ss_pred EEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecC---CCCeEE
Confidence 688899999999963 333222 33457889999 778999998 567999
Q ss_pred EEEccCCEEEEEeeC-------------------------------------C--CceEEEECCC--CCEEEEEEcCCce
Q 013871 265 FWDYVDGKQLGTTRA-------------------------------------E--CSVTSEWSPD--GRYFMTATTAPRL 303 (434)
Q Consensus 265 iwd~~~~~~i~~~~~-------------------------------------~--~~~~~~wspd--g~~l~tas~~prl 303 (434)
+||+.+++.+..+.+ | .+..++|+++ +.+|++|+.
T Consensus 354 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~---- 429 (437)
T 3gre_A 354 MFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDN---- 429 (437)
T ss_dssp EEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEET----
T ss_pred EEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcC----
Confidence 999998764444432 2 4566899998 889999999
Q ss_pred eeCCcEEEEe
Q 013871 304 QIDNGIKIFH 313 (434)
Q Consensus 304 ~~D~~i~iw~ 313 (434)
|+.|+||+
T Consensus 430 --dG~I~iw~ 437 (437)
T 3gre_A 430 --SGLIGIFQ 437 (437)
T ss_dssp --TSCEEEEC
T ss_pred --CceEEEeC
Confidence 99999995
No 76
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.94 E-value=2.3e-24 Score=211.05 Aligned_cols=244 Identities=15% Similarity=0.209 Sum_probs=184.6
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCC
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDF 80 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~ 80 (434)
|.+++|||+|++|++++ .|+.|+|||+.+++.+..+..+. ..+.++.| ++.+++++ .++.|++||+...
T Consensus 137 v~~v~~s~~~~~l~~~~-----~dg~i~iwd~~~~~~~~~~~~~~---~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~ 206 (401)
T 4aez_A 137 VASVKWSHDGSFLSVGL-----GNGLVDIYDVESQTKLRTMAGHQ---ARVGCLSW--NRHVLSSGSRSGAIHHHDVRIA 206 (401)
T ss_dssp EEEEEECTTSSEEEEEE-----TTSCEEEEETTTCCEEEEECCCS---SCEEEEEE--ETTEEEEEETTSEEEEEETTSS
T ss_pred EEEEEECCCCCEEEEEC-----CCCeEEEEECcCCeEEEEecCCC---CceEEEEE--CCCEEEEEcCCCCEEEEecccC
Confidence 78999999999999999 89999999999999988887543 66768888 56778777 5689999999853
Q ss_pred CC-ceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEE
Q 013871 81 PK-GILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAV 159 (434)
Q Consensus 81 ~~-~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~ 159 (434)
.. ......+...|.+++|+|+ +..+++ .+.++.|++|++.. ...+.....+...+..+.|+|+|..+++.
T Consensus 207 ~~~~~~~~~~~~~v~~~~~~~~-~~~l~s-----~~~d~~v~iwd~~~---~~~~~~~~~~~~~v~~~~~~p~~~~ll~~ 277 (401)
T 4aez_A 207 NHQIGTLQGHSSEVCGLAWRSD-GLQLAS-----GGNDNVVQIWDARS---SIPKFTKTNHNAAVKAVAWCPWQSNLLAT 277 (401)
T ss_dssp SCEEEEEECCSSCEEEEEECTT-SSEEEE-----EETTSCEEEEETTC---SSEEEEECCCSSCCCEEEECTTSTTEEEE
T ss_pred cceeeEEcCCCCCeeEEEEcCC-CCEEEE-----EeCCCeEEEccCCC---CCccEEecCCcceEEEEEECCCCCCEEEE
Confidence 32 2333445668999999997 555554 24567899999987 67777777788889999999999888765
Q ss_pred EEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccce---eEE--e
Q 013871 160 AQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP---ILE--L 234 (434)
Q Consensus 160 ~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~---~~~--~ 234 (434)
++...|.. ++.+++... .....+.....|.+++|+|+++.+++++|..++.+.+||+.... ... .
T Consensus 278 ~~gs~d~~---------i~i~d~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~ 347 (401)
T 4aez_A 278 GGGTMDKQ---------IHFWNAATG-ARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPA 347 (401)
T ss_dssp ECCTTTCE---------EEEEETTTC-CEEEEEECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEEC
T ss_pred ecCCCCCE---------EEEEECCCC-CEEEEEeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecC
Confidence 43222333 344444333 33334445678999999999999998778889999999986532 222 2
Q ss_pred CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEe
Q 013871 235 GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTT 277 (434)
Q Consensus 235 ~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~ 277 (434)
|...+.+++|+|+|++|++++ .+|.|+|||+.+++.+...
T Consensus 348 h~~~v~~~~~s~dg~~l~s~~---~dg~i~iw~~~~~~~~~~~ 387 (401)
T 4aez_A 348 HDTRVLYSALSPDGRILSTAA---SDENLKFWRVYDGDHVKRP 387 (401)
T ss_dssp CSSCCCEEEECTTSSEEEEEC---TTSEEEEEECCC-------
T ss_pred CCCCEEEEEECCCCCEEEEEe---CCCcEEEEECCCCcccccc
Confidence 788999999999999999998 5679999999988766543
No 77
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.94 E-value=3.8e-24 Score=227.81 Aligned_cols=298 Identities=13% Similarity=0.080 Sum_probs=212.1
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF 80 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~ 80 (434)
|++++|||+|++|++++ .|+.|+|||+.+++.+..+..+. ..+.+++|+||+++|+++. ++.|++|++...
T Consensus 58 v~~~~~s~~~~~l~~~~-----~dg~i~vw~~~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~ 129 (814)
T 3mkq_A 58 VRAGKFIARKNWIIVGS-----DDFRIRVFNYNTGEKVVDFEAHP---DYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN 129 (814)
T ss_dssp EEEEEEEGGGTEEEEEE-----TTSEEEEEETTTCCEEEEEECCS---SCEEEEEECSSSSEEEEEETTSEEEEEEGGGT
T ss_pred EEEEEEeCCCCEEEEEe-----CCCeEEEEECCCCcEEEEEecCC---CCEEEEEEeCCCCEEEEEcCCCEEEEEECCCC
Confidence 78999999999999999 79999999999999998887643 6677999999999999885 579999998764
Q ss_pred CC-ceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecc-cceeEEEECC--CCCeE
Q 013871 81 PK-GILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFR-CSTVQLNWNR--GSTGL 156 (434)
Q Consensus 81 ~~-~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~-~~~~~~~ws~--~G~~l 156 (434)
.. ......+...|.+++|+|..+..+++ .+.++.|++|++.. .........+. ..+..+.|+| +|..|
T Consensus 130 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~-----~~~dg~v~vwd~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~l 201 (814)
T 3mkq_A 130 WALEQTFEGHEHFVMCVAFNPKDPSTFAS-----GCLDRTVKVWSLGQ---STPNFTLTTGQERGVNYVDYYPLPDKPYM 201 (814)
T ss_dssp SEEEEEEECCSSCEEEEEEETTEEEEEEE-----EETTSEEEEEETTC---SSCSEEEECCCTTCCCEEEECCSTTCCEE
T ss_pred ceEEEEEcCCCCcEEEEEEEcCCCCEEEE-----EeCCCeEEEEECCC---CcceeEEecCCCCCEEEEEEEECCCCCEE
Confidence 22 22233455679999999943455544 24457999999976 45554444443 6778899999 88876
Q ss_pred EEEEEecccccCceeecceeEEEEeeCCcceeeeec-CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-ceeEEe
Q 013871 157 LAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL-RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL 234 (434)
Q Consensus 157 ~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l-~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~-~~~~~~ 234 (434)
++.. .|.. +..++..... ....+ .+.+.|.+++|+|+++.++ ++..++.|.+||+.. ..+..+
T Consensus 202 ~~~~---~dg~---------i~~~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~--~~~~dg~v~vwd~~~~~~~~~~ 266 (814)
T 3mkq_A 202 ITAS---DDLT---------IKIWDYQTKS-CVATLEGHMSNVSFAVFHPTLPIII--SGSEDGTLKIWNSSTYKVEKTL 266 (814)
T ss_dssp EEEC---TTSE---------EEEEETTTTE-EEEEEECCSSCEEEEEECSSSSEEE--EEETTSCEEEEETTTCSEEEEE
T ss_pred EEEe---CCCE---------EEEEECCCCc-EEEEEcCCCCCEEEEEEcCCCCEEE--EEeCCCeEEEEECCCCcEEEEe
Confidence 5531 2222 3334433332 22222 3578999999999999888 577789999999964 444444
Q ss_pred --CCcCeeEEEECCCCCe-EEEEecCCCCCeEEEEEccCC----------EEEEEe------------------------
Q 013871 235 --GSGPYNTVRWNPKGKF-LCLAGFGNLPGDMAFWDYVDG----------KQLGTT------------------------ 277 (434)
Q Consensus 235 --~~~~~~~i~~SP~g~~-l~~~~~~~~~g~i~iwd~~~~----------~~i~~~------------------------ 277 (434)
+...+.+++|+|+|+. +++++.+ +.+.+|++... +.+...
T Consensus 267 ~~~~~~v~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (814)
T 3mkq_A 267 NVGLERSWCIATHPTGRKNYIASGFD---NGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDE 343 (814)
T ss_dssp CCSSSSEEEEEECTTCGGGEEEEEET---TEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSS
T ss_pred ecCCCcEEEEEEccCCCceEEEEEeC---CCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCc
Confidence 6788999999999983 2334423 46888886532 222210
Q ss_pred ---------eCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceeeeeecccceeeEEEcCCCCCCCC
Q 013871 278 ---------RAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKKMFDKLFQAEWKPVSPDKFGD 342 (434)
Q Consensus 278 ---------~~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~~~~~~~~~~~~~~w~p~~~~~~~~ 342 (434)
..+ .+..++|+|||++|++++ |+.+.||++...... ....+..+.|+|++..+...
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-------~~~~~i~~~~~~~~~--~~~~i~~~~~spdg~~la~~ 410 (814)
T 3mkq_A 344 PLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-------DGEYVIYTALAWRNK--AFGKCQDFVWGPDSNSYALI 410 (814)
T ss_dssp CBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-------TTEEEEEETTTTEEE--EEEECSEEEECTTSSCEEEE
T ss_pred cceeeeecCCCCccCCceeEECCCCCEEEEec-------CCEEEEEECcccccc--CCCceEEEEEeCCCCeEEEE
Confidence 111 345699999999999886 789999997654322 24567889999988766543
No 78
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.94 E-value=4e-24 Score=205.87 Aligned_cols=236 Identities=9% Similarity=0.103 Sum_probs=177.4
Q ss_pred CCCCeeeecCCCcEEEEe-cCCeEEEEeCCCCC--CceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcC
Q 013871 50 TTWPSIRFSSDEAVACRM-ATNEIQFFDTTDFP--KGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACG 126 (434)
Q Consensus 50 ~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~~--~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~ 126 (434)
..+.+++|+||+++|+++ .++.|++|+..... .......+...|.+++|+|+ +..+++. +.++.|++|++.
T Consensus 9 ~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~~~-----~~dg~i~vwd~~ 82 (372)
T 1k8k_C 9 EPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPD-SNRIVTC-----GTDRNAYVWTLK 82 (372)
T ss_dssp SCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETT-TTEEEEE-----ETTSCEEEEEEE
T ss_pred CCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCC-CCEEEEE-----cCCCeEEEEECC
Confidence 677799999999999998 57899999987753 22333445668999999998 4555542 345789999997
Q ss_pred CCCCCCceee--eeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcc--eeeeecCCCCCeEEEE
Q 013871 127 KDLQSQPLAR--RSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH--EGLVPLRKEGPVHDVQ 202 (434)
Q Consensus 127 ~~~~~~~i~~--~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~--~~~v~l~~~~~i~~v~ 202 (434)
. .+.... ...+...+..+.|+|+|+.|++.. .|... .+|.++..... ...+...+...|.+++
T Consensus 83 ~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d~~v-------~i~d~~~~~~~~~~~~~~~~~~~~i~~~~ 149 (372)
T 1k8k_C 83 G---RTWKPTLVILRINRAARCVRWAPNEKKFAVGS---GSRVI-------SICYFEQENDWWVCKHIKKPIRSTVLSLD 149 (372)
T ss_dssp T---TEEEEEEECCCCSSCEEEEEECTTSSEEEEEE---TTSSE-------EEEEEETTTTEEEEEEECTTCCSCEEEEE
T ss_pred C---CeeeeeEEeecCCCceeEEEECCCCCEEEEEe---CCCEE-------EEEEecCCCcceeeeeeecccCCCeeEEE
Confidence 6 443333 244677888999999999876542 23222 24444332211 1122233578999999
Q ss_pred ECcCCCEEEEEEccCCCeEEEEecc-------------------cceeEEe--CCcCeeEEEECCCCCeEEEEecCCCCC
Q 013871 203 WSYSGSEFAVVYGFMPASATIFNKK-------------------CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPG 261 (434)
Q Consensus 203 wspdg~~~av~~g~~~~~v~l~d~~-------------------~~~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g 261 (434)
|+|+++.|+ ++..++.+.+||++ ...+..+ |...+++++|+|+|++|++++ .+|
T Consensus 150 ~~~~~~~l~--~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d~ 224 (372)
T 1k8k_C 150 WHPNSVLLA--AGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVS---HDS 224 (372)
T ss_dssp ECTTSSEEE--EEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEE---TTT
T ss_pred EcCCCCEEE--EEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEe---CCC
Confidence 999999888 57778999999953 3445555 578899999999999999998 567
Q ss_pred eEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecC
Q 013871 262 DMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG 316 (434)
Q Consensus 262 ~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g 316 (434)
.|++||+.+++.+..+..+ .+..++|+|+|++|+++ . |+.|+||++..
T Consensus 225 ~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~------d~~i~i~~~~~ 274 (372)
T 1k8k_C 225 TVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-H------DCFPVLFTYDS 274 (372)
T ss_dssp EEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-T------TSSCEEEEEET
T ss_pred EEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-e------CCeEEEEEccC
Confidence 9999999999888888776 56679999999988887 6 99999999976
No 79
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.5e-24 Score=208.99 Aligned_cols=236 Identities=13% Similarity=0.189 Sum_probs=165.8
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcC--CCcEEEEEeecCcCCCCCCeeeecCC--CcEEEEec-CCeEEEEe
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTE--TGEAVYQLFQKNMTKTTWPSIRFSSD--EAVACRMA-TNEIQFFD 76 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~--~g~~~~~~~~~~~~~~~~~~~~~S~d--~~~la~~~-~~~i~v~~ 76 (434)
|++|+|||+|++|++++ .|+.|+|||+. +++.+..+..+ ...+.+++|+++ +.+|+++. |+.|++||
T Consensus 14 v~~~~~s~~~~~l~~~~-----~dg~i~iw~~~~~~~~~~~~~~~h---~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd 85 (379)
T 3jrp_A 14 IHDAVLDYYGKRLATCS-----SDKTIKIFEVEGETHKLIDTLTGH---EGPVWRVDWAHPKFGTILASCSYDGKVLIWK 85 (379)
T ss_dssp EEEEEECSSSSEEEEEE-----TTSCEEEEEEETTEEEEEEEECCC---SSCEEEEEECCGGGCSEEEEEETTSCEEEEE
T ss_pred EEEEEEcCCCCEEEEEE-----CCCcEEEEecCCCcceeeeEecCC---CCcEEEEEeCCCCCCCEEEEeccCCEEEEEE
Confidence 78999999999999998 89999999998 55666666554 366779999987 89998885 67999999
Q ss_pred CCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCC--CC
Q 013871 77 TTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRG--ST 154 (434)
Q Consensus 77 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~--G~ 154 (434)
+......... ....+...+..+.|+|+ |.
T Consensus 86 ~~~~~~~~~~-------------------------------------------------~~~~~~~~v~~~~~~~~~~~~ 116 (379)
T 3jrp_A 86 EENGRWSQIA-------------------------------------------------VHAVHSASVNSVQWAPHEYGP 116 (379)
T ss_dssp EETTEEEEEE-------------------------------------------------EECCCSSCEEEEEECCGGGCS
T ss_pred cCCCceeEee-------------------------------------------------eecCCCcceEEEEeCCCCCCC
Confidence 7652200000 00112234456777777 66
Q ss_pred eEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECc-------------CCCEEEEEEccCCCeE
Q 013871 155 GLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSY-------------SGSEFAVVYGFMPASA 221 (434)
Q Consensus 155 ~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wsp-------------dg~~~av~~g~~~~~v 221 (434)
.+++.. .|...+ +|.+.............+..+|.+++|+| ++..|+ ++..++.|
T Consensus 117 ~l~~~~---~d~~i~-------v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~dg~i 184 (379)
T 3jrp_A 117 LLLVAS---SDGKVS-------VVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFV--TGGADNLV 184 (379)
T ss_dssp EEEEEE---TTSEEE-------EEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEE--EEETTSCE
T ss_pred EEEEec---CCCcEE-------EEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEE--EEeCCCeE
Confidence 654431 222222 23332221111222224578999999999 688887 57788999
Q ss_pred EEEecccc-----eeEEe--CCcCeeEEEECCC---CCeEEEEecCCCCCeEEEEEccCCE---EEEEee--CC--CceE
Q 013871 222 TIFNKKCR-----PILEL--GSGPYNTVRWNPK---GKFLCLAGFGNLPGDMAFWDYVDGK---QLGTTR--AE--CSVT 284 (434)
Q Consensus 222 ~l~d~~~~-----~~~~~--~~~~~~~i~~SP~---g~~l~~~~~~~~~g~i~iwd~~~~~---~i~~~~--~~--~~~~ 284 (434)
++||++.. .+..+ |...+++++|+|+ |++|++++ .+|.|+|||+.++. ...... .+ .+..
T Consensus 185 ~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~ 261 (379)
T 3jrp_A 185 KIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVS---QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWR 261 (379)
T ss_dssp EEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEE---TTSCEEEEEESSTTSCCEEEESSSSCCSSCEEE
T ss_pred EEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEe---CCCEEEEEeCCCCCccceeeeeccccCCCcEEE
Confidence 99998632 22233 6889999999999 89999998 66799999998762 222221 12 5667
Q ss_pred EEECCCCCEEEEEEcCCceeeCCcEEEEeec
Q 013871 285 SEWSPDGRYFMTATTAPRLQIDNGIKIFHHN 315 (434)
Q Consensus 285 ~~wspdg~~l~tas~~prl~~D~~i~iw~~~ 315 (434)
++|+|||++|++++. |+.|+||++.
T Consensus 262 ~~~s~~g~~l~~~~~------dg~i~iw~~~ 286 (379)
T 3jrp_A 262 ASWSLSGNVLALSGG------DNKVTLWKEN 286 (379)
T ss_dssp EEECSSSCCEEEEES------SSSEEEEEEE
T ss_pred EEEcCCCCEEEEecC------CCcEEEEeCC
Confidence 999999999999999 9999999996
No 80
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.93 E-value=2.5e-23 Score=197.77 Aligned_cols=282 Identities=17% Similarity=0.147 Sum_probs=198.6
Q ss_pred cEEEEEcCCC--cEEEEEeecCcCCCCCCeeeecCC-CcEEEEec-CCeEEEEeCCCCCCce-----eeeeecCCeeEEE
Q 013871 27 NVILWKTETG--EAVYQLFQKNMTKTTWPSIRFSSD-EAVACRMA-TNEIQFFDTTDFPKGI-----LYRLRVPGVAAFE 97 (434)
Q Consensus 27 ~v~iWd~~~g--~~~~~~~~~~~~~~~~~~~~~S~d-~~~la~~~-~~~i~v~~~~~~~~~~-----~~~~~~~~v~~~~ 97 (434)
++.++...+. +...++.+ |...|.+++|+|+ +++|++++ |++|+|||+....... ....|...|.++.
T Consensus 17 ~~~~~~~~~~~~~l~~tL~G---H~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~ 93 (340)
T 4aow_A 17 NLYFQSMMTEQMTLRGTLKG---HNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVV 93 (340)
T ss_dssp ---------CEEEEEEEECC---CSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEE
T ss_pred cEEEEEccCCceEEEEEECC---ccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEE
Confidence 4555554433 33445655 4478889999997 58999874 6899999987644221 1223456799999
Q ss_pred EeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeE
Q 013871 98 VSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKL 177 (434)
Q Consensus 98 ~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l 177 (434)
|+|+ +..++. .+.++.|++|+... ................+.+++++..|+.. ..|...+
T Consensus 94 ~s~d-g~~l~s-----~~~d~~i~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~s~---s~d~~~~-------- 153 (340)
T 4aow_A 94 ISSD-GQFALS-----GSWDGTLRLWDLTT---GTTTRRFVGHTKDVLSVAFSSDNRQIVSG---SRDKTIK-------- 153 (340)
T ss_dssp ECTT-SSEEEE-----EETTSEEEEEETTT---TEEEEEEECCSSCEEEEEECTTSSCEEEE---ETTSCEE--------
T ss_pred ECCC-CCEEEE-----EcccccceEEeecc---cceeeeecCCCCceeEEEEeecCccceee---cCCCeEE--------
Confidence 9998 455553 34567899999987 56666666677777888999999886543 2343333
Q ss_pred EEEeeCCcceeeee-cCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccc-eeEEe--CCcCeeEEEECCCCCeEEE
Q 013871 178 NYLTTDGTHEGLVP-LRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PILEL--GSGPYNTVRWNPKGKFLCL 253 (434)
Q Consensus 178 ~~l~~~~~~~~~v~-l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~-~~~~~--~~~~~~~i~~SP~g~~l~~ 253 (434)
.++.......... ..+...+..++|++++....++++..++.|++||++.. .+..+ |.+.+++++|+|+|++|++
T Consensus 154 -~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s 232 (340)
T 4aow_A 154 -LWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCAS 232 (340)
T ss_dssp -EECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred -EEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEE
Confidence 2233232222222 22467899999999887655557888999999999754 34444 7889999999999999999
Q ss_pred EecCCCCCeEEEEEccCCEEEEEeeCC-CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceee-e----------
Q 013871 254 AGFGNLPGDMAFWDYVDGKQLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFF-K---------- 321 (434)
Q Consensus 254 ~~~~~~~g~i~iwd~~~~~~i~~~~~~-~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~~~-~---------- 321 (434)
++ .+|.|++||+.+.+.+..+.++ .+..+.|+|++.++ +++. |+.|+|||+.+..+. .
T Consensus 233 ~s---~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~------d~~i~iwd~~~~~~~~~~~~~~~~~~~ 302 (340)
T 4aow_A 233 GG---KDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWL-CAAT------GPSIKIWDLEGKIIVDELKQEVISTSS 302 (340)
T ss_dssp EE---TTCEEEEEETTTTEEEEEEECSSCEEEEEECSSSSEE-EEEE------TTEEEEEETTTTEEEEEECCC------
T ss_pred Ee---CCCeEEEEEeccCceeeeecCCceEEeeecCCCCcee-eccC------CCEEEEEECCCCeEEEeccccceeeec
Confidence 98 6679999999999999888876 45569999998755 5556 999999999765432 2
Q ss_pred -eecccceeeEEEcCCCCCCCC
Q 013871 322 -KMFDKLFQAEWKPVSPDKFGD 342 (434)
Q Consensus 322 -~~~~~~~~~~w~p~~~~~~~~ 342 (434)
.+...+..++|.|++..|++.
T Consensus 303 ~~h~~~v~~l~~s~dg~~l~sg 324 (340)
T 4aow_A 303 KAEPPQCTSLAWSADGQTLFAG 324 (340)
T ss_dssp -CCCCCEEEEEECTTSSEEEEE
T ss_pred cCCCCCEEEEEECCCCCEEEEE
Confidence 133568899999999888765
No 81
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1.2e-23 Score=200.52 Aligned_cols=275 Identities=14% Similarity=0.137 Sum_probs=184.3
Q ss_pred CCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCCCCceeeee----ecCCeeEEEEeCCCCCeEEEE
Q 013871 35 TGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDFPKGILYRL----RVPGVAAFEVSKAPGSHVAVF 109 (434)
Q Consensus 35 ~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~~~~~~~~~----~~~~v~~~~~sp~~~~~ia~~ 109 (434)
+.+++..+..+. ..+.+++|+++ +||++ .|++|++|++..........+ |...|.+++|+|+ +.+++.
T Consensus 3 ~~~~~~~~~~h~---~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~-~~~las- 75 (330)
T 2hes_X 3 SINLIKSLKLYK---EKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPH-TSLLAA- 75 (330)
T ss_dssp CCEEEEEEECCS---SCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTT-SSEEEE-
T ss_pred ccccceeeccCC---CceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCC-CCEEEE-
Confidence 455667776654 56669999998 77777 578999999876332122222 5557999999998 555654
Q ss_pred ecCCCCCCceEEEEEcCCCC----CCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCc
Q 013871 110 VPESKGSPASVQIYACGKDL----QSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGT 185 (434)
Q Consensus 110 ~~~~~~~~~~v~i~~~~~~~----~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~ 185 (434)
.+.++.|+||++.... ....+.....|...+..+.|+|+|++|+.. ..|.+.+.| .+...+.
T Consensus 76 ----~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~---s~D~~v~iw-------d~~~~~~ 141 (330)
T 2hes_X 76 ----GSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATC---SRDKSVWIW-------ETDESGE 141 (330)
T ss_dssp ----EETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEE---ETTSCEEEE-------ECCTTCC
T ss_pred ----EeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEE---eCCCEEEEE-------eccCCCC
Confidence 3456789999985311 023455666788889999999999986543 245554433 3211111
Q ss_pred -ceeeeec-CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc---ceeEEe--CCcCeeEEEECCC--CCeEEEEec
Q 013871 186 -HEGLVPL-RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC---RPILEL--GSGPYNTVRWNPK--GKFLCLAGF 256 (434)
Q Consensus 186 -~~~~v~l-~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~---~~~~~~--~~~~~~~i~~SP~--g~~l~~~~~ 256 (434)
......+ .+...|.+++|+|++..|+ +++.|+.|++||... ..+..+ |.+.+.++.|+|+ +.+|++++
T Consensus 142 ~~~~~~~~~~h~~~v~~v~~~p~~~~l~--s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s- 218 (330)
T 2hes_X 142 EYECISVLQEHSQDVKHVIWHPSEALLA--SSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGS- 218 (330)
T ss_dssp CCEEEEEECCCSSCEEEEEECSSSSEEE--EEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEE-
T ss_pred CeEEEEEeccCCCceEEEEECCCCCEEE--EEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEe-
Confidence 1122222 3578999999999999888 678899999999853 344444 7889999999999 67899998
Q ss_pred CCCCCeEEEEEccCC--------EEEEEeeC-C--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc---eeeee
Q 013871 257 GNLPGDMAFWDYVDG--------KQLGTTRA-E--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS---LFFKK 322 (434)
Q Consensus 257 ~~~~g~i~iwd~~~~--------~~i~~~~~-~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~---~~~~~ 322 (434)
.+|.|++||+.++ ..+..+.. | .+..++|++++ +|++++. |+.|+||+.... .+...
T Consensus 219 --~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~------dg~v~iw~~~~~~~~~~~~~ 289 (330)
T 2hes_X 219 --DDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGA------DGVLAVYEEVDGEWKVFAKR 289 (330)
T ss_dssp --TTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEET------TSCEEEEEEETTEEEEEEEE
T ss_pred --CCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeC------CCEEEEEEcCCCceEEEecc
Confidence 5679999998754 34444443 3 56679999776 7899998 999999998653 22222
Q ss_pred ---ecc-cceeeEEEcC--CCCCCCC
Q 013871 323 ---MFD-KLFQAEWKPV--SPDKFGD 342 (434)
Q Consensus 323 ---~~~-~~~~~~w~p~--~~~~~~~ 342 (434)
+.. .+..++|.|. +..|++.
T Consensus 290 ~~~h~~~~v~~v~~~~~~~~~~las~ 315 (330)
T 2hes_X 290 ALCHGVYEINVVKWLELNGKTILATG 315 (330)
T ss_dssp SCTTTTSCEEEEEEC-----CCEEEE
T ss_pred ccccccceEEEEEEecCCCceEEEEe
Confidence 233 6889999994 4445443
No 82
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.93 E-value=3.9e-23 Score=205.49 Aligned_cols=284 Identities=9% Similarity=-0.030 Sum_probs=194.5
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCc---EEEEEeecCc-------------------------------
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGE---AVYQLFQKNM------------------------------- 47 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~---~~~~~~~~~~------------------------------- 47 (434)
|.+++|||||++|++.. ++.|++||+.+|+ .+..+.....
T Consensus 7 ~~~v~~s~dg~~l~~~~------~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (450)
T 2vdu_B 7 LQNLLTSRDGSLVFAII------KNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNK 80 (450)
T ss_dssp CCEEEECSSSSEEEEEE------TTEEEEEEEETTTEEEEEEEEECCC--------------------------------
T ss_pred EEEEEecCCCCEEEEEe------CCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCc
Confidence 57899999999888765 5789999999999 6666653210
Q ss_pred --------------------CCCCCCeeeecCCCcEE-EEe-cCCeEEEEeCC--CCCCceeee--eecCCeeEEEEeCC
Q 013871 48 --------------------TKTTWPSIRFSSDEAVA-CRM-ATNEIQFFDTT--DFPKGILYR--LRVPGVAAFEVSKA 101 (434)
Q Consensus 48 --------------------~~~~~~~~~~S~d~~~l-a~~-~~~~i~v~~~~--~~~~~~~~~--~~~~~v~~~~~sp~ 101 (434)
+...+.+++|+||+++| +++ .++.|++|++. ......... .+...|.+++|+|+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 160 (450)
T 2vdu_B 81 GDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAED 160 (450)
T ss_dssp -------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTT
T ss_pred CccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCC
Confidence 11146789999999996 666 56899999998 544333332 23457999999998
Q ss_pred CCCeEEEEecCCCCCCceEEEEEcCCCCCCC-ceeeeeecccceeEEEECCC---CCeEEEEEEecccccCceeecceeE
Q 013871 102 PGSHVAVFVPESKGSPASVQIYACGKDLQSQ-PLARRSFFRCSTVQLNWNRG---STGLLAVAQSDVDKTNQSYYGESKL 177 (434)
Q Consensus 102 ~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~-~i~~~~~~~~~~~~~~ws~~---G~~l~~~~~~~~d~~~~~~~g~~~l 177 (434)
+..+++- +..+.|.+|++.+..... .+.....+...+.++.|+|+ |..|+.. +.|...
T Consensus 161 -~~~l~~~-----~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~---~~d~~i--------- 222 (450)
T 2vdu_B 161 -DTTVIIA-----DKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITS---DRDEHI--------- 222 (450)
T ss_dssp -SSEEEEE-----ETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEE---ETTSCE---------
T ss_pred -CCEEEEE-----eCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEE---cCCCcE---------
Confidence 4555442 346789999987632121 33356677888999999999 7765432 234333
Q ss_pred EEEeeCCcceeee-ecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-ceeEEeC--------------------
Q 013871 178 NYLTTDGTHEGLV-PLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILELG-------------------- 235 (434)
Q Consensus 178 ~~l~~~~~~~~~v-~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~-~~~~~~~-------------------- 235 (434)
+++++........ ...+.+.|.+++|+ +++.|+ ++..|+.|.+||++. ..+..+.
T Consensus 223 ~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~--s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (450)
T 2vdu_B 223 KISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLL--SAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQ 299 (450)
T ss_dssp EEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEE--EEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC-----
T ss_pred EEEECCCCceeeeeecCCCCceEEEEEC-CCCEEE--EEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhccccccccc
Confidence 3333333322222 23467899999999 999988 577899999999864 3333331
Q ss_pred -------CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEc--cCC---EEEEEeeCC-CceEEEECCCCCEEEEEEcCCc
Q 013871 236 -------SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDY--VDG---KQLGTTRAE-CSVTSEWSPDGRYFMTATTAPR 302 (434)
Q Consensus 236 -------~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~--~~~---~~i~~~~~~-~~~~~~wspdg~~l~tas~~pr 302 (434)
...+..++|+|+|++|++++.+ ++.|.|||+ .++ +.+..+..+ .+..++|+|++ .+++......
T Consensus 300 ~~~~~~~~~~v~~i~~~~~~~~l~~~~~~--d~~i~iw~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~-~~v~~~~~~~ 376 (450)
T 2vdu_B 300 NENNDIIEFAVSKIIKSKNLPFVAFFVEA--TKCIIILEMSEKQKGDLALKQIITFPYNVISLSAHNDE-FQVTLDNKES 376 (450)
T ss_dssp -----CBCCCEEEEEECSSSSEEEEEETT--CSEEEEEEECSSSTTCEEEEEEEECSSCEEEEEEETTE-EEEEECCTTC
T ss_pred ccccccceEEEEEEEEeCCCCEEEEEECC--CCeEEEEEeccCCCCceeeccEeccCCceEEEEecCCc-EEEEEecccC
Confidence 2457899999999999988733 379999999 555 677777665 56679999964 4444433100
Q ss_pred ee-eCCcEEEEeec
Q 013871 303 LQ-IDNGIKIFHHN 315 (434)
Q Consensus 303 l~-~D~~i~iw~~~ 315 (434)
.. -++.|.||.++
T Consensus 377 ~~~~~~~i~v~~~~ 390 (450)
T 2vdu_B 377 SGVQKNFAKFIEYN 390 (450)
T ss_dssp CSSCCCSEEEEEEE
T ss_pred CCCCCcceEEEEEE
Confidence 00 15668999875
No 83
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.93 E-value=7.9e-24 Score=204.04 Aligned_cols=245 Identities=13% Similarity=0.149 Sum_probs=167.0
Q ss_pred EEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEE
Q 013871 30 LWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVF 109 (434)
Q Consensus 30 iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~ 109 (434)
||++.+++.+.++..+ ...+.+++|||||++||++.++.++||++.... ........++..+.++++ ...+++.
T Consensus 3 i~s~~~~~~~~~~~~h---~~~V~~v~fs~dg~~la~g~~~~~~iw~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~ 76 (355)
T 3vu4_A 3 LGSMITRNPIVPENHV---SNPVTDYEFNQDQSCLILSTLKSFEIYNVHPVA--HIMSQEMRHLSKVRMLHR-TNYVAFV 76 (355)
T ss_dssp -------------------CCCCCEEEECTTSSEEEEECSSEEEEEEETTEE--EEEEEECSCCCEEEECTT-SSEEEEE
T ss_pred cccccccCCccccccC---CCceEEEEECCCCCEEEEEcCCEEEEEecCCcc--eeeeeecCCeEEEEEcCC-CCEEEEE
Confidence 5677777776655443 367889999999999999988889999987643 223344456888888887 4444432
Q ss_pred ecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceee
Q 013871 110 VPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGL 189 (434)
Q Consensus 110 ~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~ 189 (434)
++.++.|++|++.+ ++.+.... +...+..+.|++++ +++. .|. .++.+++.......
T Consensus 77 ----~~~d~~v~iWd~~~---~~~~~~~~-~~~~v~~v~~~~~~--~~~~----~~~---------~i~i~d~~~~~~~~ 133 (355)
T 3vu4_A 77 ----TGVKEVVHIWDDVK---KQDVSRIK-VDAPVKDLFLSREF--IVVS----YGD---------VISVFKFGNPWKRI 133 (355)
T ss_dssp ----CSSTTEEEEEETTT---TEEEEEEE-CSSCEEEEEECSSE--EEEE----ETT---------EEEEEESSTTCCBS
T ss_pred ----ECCccEEEEEECCC---CcEEEEEE-CCCceEEEEEcCCE--EEEE----EcC---------EEEEEECCCCceee
Confidence 23446999999987 67777666 45578889998864 3332 122 13333333321111
Q ss_pred eecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccce-----------------eEEe--CCcCeeEEEECCCCCe
Q 013871 190 VPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP-----------------ILEL--GSGPYNTVRWNPKGKF 250 (434)
Q Consensus 190 v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~-----------------~~~~--~~~~~~~i~~SP~g~~ 250 (434)
..+. .+...+++++ ..+++.+|..++.|++||++... +..+ |.+.+++++|||+|++
T Consensus 134 ~~~~--~~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~ 209 (355)
T 3vu4_A 134 TDDI--RFGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDM 209 (355)
T ss_dssp SCCE--EEEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSE
T ss_pred EEec--cCCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCE
Confidence 1111 1445567777 67776558899999999997532 3444 7899999999999999
Q ss_pred EEEEecCCCCCe-EEEEEccCCEEEEEee-C-C--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecC
Q 013871 251 LCLAGFGNLPGD-MAFWDYVDGKQLGTTR-A-E--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG 316 (434)
Q Consensus 251 l~~~~~~~~~g~-i~iwd~~~~~~i~~~~-~-~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g 316 (434)
|++++ .+|+ |+|||+.+++++..+. + | .+..++|+|||++|++++. |+.|+||++..
T Consensus 210 l~s~s---~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~------d~~v~iw~~~~ 271 (355)
T 3vu4_A 210 VATCS---QDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSD------KWTLHVFEIFN 271 (355)
T ss_dssp EEEEE---TTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEET------TCEEEEEESSC
T ss_pred EEEEe---CCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEEC------CCEEEEEEccC
Confidence 99999 6678 9999999999998887 3 4 5667999999999999999 99999999954
No 84
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.93 E-value=1.7e-24 Score=214.00 Aligned_cols=243 Identities=8% Similarity=0.119 Sum_probs=168.7
Q ss_pred CCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCC-----------ceeeeeec------------CCeeEEEEeCCCC-C
Q 013871 50 TTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPK-----------GILYRLRV------------PGVAAFEVSKAPG-S 104 (434)
Q Consensus 50 ~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~-----------~~~~~~~~------------~~v~~~~~sp~~~-~ 104 (434)
..+.+++|+|||++||++. ++.|+||++..... ......|. ..|.++.|+|+++ .
T Consensus 29 ~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~ 108 (447)
T 3dw8_B 29 DIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAA 108 (447)
T ss_dssp GSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSS
T ss_pred CcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcc
Confidence 5677999999999999985 68999999876441 12233344 5699999999853 3
Q ss_pred eEEEEecCCCCCCceEEEEEcCCCCCCCce---------------------------------------ee-eeecccce
Q 013871 105 HVAVFVPESKGSPASVQIYACGKDLQSQPL---------------------------------------AR-RSFFRCST 144 (434)
Q Consensus 105 ~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i---------------------------------------~~-~~~~~~~~ 144 (434)
.++.- +.++.|++|++... ... .. ...|...+
T Consensus 109 ~l~s~-----s~d~~i~iw~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 180 (447)
T 3dw8_B 109 QFLLS-----TNDKTIKLWKISER---DKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHI 180 (447)
T ss_dssp EEEEE-----ECSSCEEEEEEEEE---EEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCC
T ss_pred eEEEe-----CCCCeEEEEecccc---cCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcce
Confidence 44432 45678999998651 110 01 23467788
Q ss_pred eEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCC-CEEEEEEccCCCeEEE
Q 013871 145 VQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSG-SEFAVVYGFMPASATI 223 (434)
Q Consensus 145 ~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg-~~~av~~g~~~~~v~l 223 (434)
..+.|+|+|+.|+.. .|...+.|.-...-..+..... .......+...|.+++|+|++ +.|+ ++..++.|++
T Consensus 181 ~~~~~~~~~~~l~s~----~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~p~~~~~l~--s~~~dg~i~i 253 (447)
T 3dw8_B 181 NSISINSDYETYLSA----DDLRINLWHLEITDRSFNIVDI-KPANMEELTEVITAAEFHPNSCNTFV--YSSSKGTIRL 253 (447)
T ss_dssp CEEEECTTSSEEEEE----CSSEEEEEETTEEEEEEEEEEC-CCSSGGGCCCCEEEEEECSSCTTEEE--EEETTSCEEE
T ss_pred EEEEEcCCCCEEEEe----CCCeEEEEECCCCCceeeeeec-ccccccccCcceEEEEECCCCCcEEE--EEeCCCeEEE
Confidence 899999999986542 3555554432211000000000 000011347889999999998 7777 5778999999
Q ss_pred Eecccce-----eEEe--CCc------------CeeEEEECCCCCeEEEEecCCCCCeEEEEEccC-CEEEEEeeCCC--
Q 013871 224 FNKKCRP-----ILEL--GSG------------PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD-GKQLGTTRAEC-- 281 (434)
Q Consensus 224 ~d~~~~~-----~~~~--~~~------------~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~-~~~i~~~~~~~-- 281 (434)
||++... +..+ +.. .+++++|+|+|++|++++ . |.|+|||+.+ ++.+..+..|.
T Consensus 254 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~---~-~~v~iwd~~~~~~~~~~~~~~~~~ 329 (447)
T 3dw8_B 254 CDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRD---Y-LSVKVWDLNMENRPVETYQVHEYL 329 (447)
T ss_dssp EETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEE---S-SEEEEEETTCCSSCSCCEESCGGG
T ss_pred EECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEee---C-CeEEEEeCCCCccccceeeccccc
Confidence 9997533 3444 333 899999999999999987 4 6999999987 77777777663
Q ss_pred ---------------ceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc
Q 013871 282 ---------------SVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS 317 (434)
Q Consensus 282 ---------------~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~ 317 (434)
...++|+|||++|++++. |+.|+|||+...
T Consensus 330 ~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~------dg~v~iwd~~~~ 374 (447)
T 3dw8_B 330 RSKLCSLYENDCIFDKFECCWNGSDSVVMTGSY------NNFFRMFDRNTK 374 (447)
T ss_dssp TTTHHHHHHTSGGGCCCCEEECTTSSEEEEECS------TTEEEEEETTTC
T ss_pred cccccccccccccccceEEEECCCCCEEEEecc------CCEEEEEEcCCC
Confidence 223899999999999999 999999999654
No 85
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.93 E-value=4.3e-24 Score=209.02 Aligned_cols=276 Identities=9% Similarity=0.101 Sum_probs=196.5
Q ss_pred ceEEecCCCcEEEE-EecCCCCCCCcEEEEEcCCCcE----EEEEeecCcCCCCCCeeeecC-CCcEEEEec-CCeEEEE
Q 013871 3 LLLTCLRVGLIIQT-FQKSSTPQEKNVILWKTETGEA----VYQLFQKNMTKTTWPSIRFSS-DEAVACRMA-TNEIQFF 75 (434)
Q Consensus 3 ~~l~fSP~g~~L~t-~~~~~~~~d~~v~iWd~~~g~~----~~~~~~~~~~~~~~~~~~~S~-d~~~la~~~-~~~i~v~ 75 (434)
..++++|+...++. .+ .|+.|+||++.+... +..+.. |...+.+++|+| ++.+|+++. |+.|++|
T Consensus 38 ~~~~~~~~~~~~~~~~~-----~~g~i~v~~~~~~~~~~~~~~~~~~---h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw 109 (402)
T 2aq5_A 38 GFCAVNPKFMALICEAS-----GGGAFLVLPLGKTGRVDKNVPLVCG---HTAPVLDIAWCPHNDNVIASGSEDCTVMVW 109 (402)
T ss_dssp CSEEECSSEEEEEBCCS-----SSCCEEEEETTCCEECCTTCCCBCC---CSSCEEEEEECTTCTTEEEEEETTSEEEEE
T ss_pred CcEEECCCeEEEEEEEc-----CCCEEEEEECccCCCCCCCCceEec---CCCCEEEEEeCCCCCCEEEEEeCCCeEEEE
Confidence 35778887765553 33 689999999865432 222322 447788999999 999999985 6799999
Q ss_pred eCCCCC-------CceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeee--eecccceeE
Q 013871 76 DTTDFP-------KGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARR--SFFRCSTVQ 146 (434)
Q Consensus 76 ~~~~~~-------~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~--~~~~~~~~~ 146 (434)
++.... .......|...|.+++|+|++...++.. +.++.|++|++.+ ++.+... ..+...+..
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~-----~~dg~i~iwd~~~---~~~~~~~~~~~~~~~v~~ 181 (402)
T 2aq5_A 110 EIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSA-----GCDNVILVWDVGT---GAAVLTLGPDVHPDTIYS 181 (402)
T ss_dssp ECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEE-----ETTSCEEEEETTT---TEEEEEECTTTCCSCEEE
T ss_pred EccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEE-----cCCCEEEEEECCC---CCccEEEecCCCCCceEE
Confidence 998752 2233445667899999999964566542 4567899999987 6777666 668888999
Q ss_pred EEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeee--cCCCC-CeEEEEECcCCCEEEEEEc---cCCCe
Q 013871 147 LNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVP--LRKEG-PVHDVQWSYSGSEFAVVYG---FMPAS 220 (434)
Q Consensus 147 ~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~--l~~~~-~i~~v~wspdg~~~av~~g---~~~~~ 220 (434)
+.|+|+|+.|+... .|.. +..+++.... .... ..+.+ .+..++|+|+++.+++ | ..++.
T Consensus 182 ~~~~~~~~~l~~~~---~d~~---------i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~--g~~~~~d~~ 246 (402)
T 2aq5_A 182 VDWSRDGALICTSC---RDKR---------VRVIEPRKGT-VVAEKDRPHEGTRPVHAVFVSEGKILTT--GFSRMSERQ 246 (402)
T ss_dssp EEECTTSSCEEEEE---TTSE---------EEEEETTTTE-EEEEEECSSCSSSCCEEEECSTTEEEEE--EECTTCCEE
T ss_pred EEECCCCCEEEEEe---cCCc---------EEEEeCCCCc-eeeeeccCCCCCcceEEEEcCCCcEEEE--eccCCCCce
Confidence 99999999876532 3332 3444443332 2222 23344 4899999999987774 5 57889
Q ss_pred EEEEecccce----eEEe-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCE----EEEEeeC-CCceEEEECCC
Q 013871 221 ATIFNKKCRP----ILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK----QLGTTRA-ECSVTSEWSPD 290 (434)
Q Consensus 221 v~l~d~~~~~----~~~~-~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~----~i~~~~~-~~~~~~~wspd 290 (434)
|.+||++... ...+ +...+.+++|+|+|++|++++. .+|.|++||+.+++ .+..+.+ ..+..++|+|+
T Consensus 247 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~--~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~ 324 (402)
T 2aq5_A 247 VALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGK--GDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPK 324 (402)
T ss_dssp EEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEET--TCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCG
T ss_pred EEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEc--CCCeEEEEEecCCCcceEeecccccCCcccceEEecc
Confidence 9999996422 2333 5677999999999999987663 35799999999875 3444432 35677999999
Q ss_pred CCEEEEEEcCCceeeCCcEEEEeecCcee
Q 013871 291 GRYFMTATTAPRLQIDNGIKIFHHNGSLF 319 (434)
Q Consensus 291 g~~l~tas~~prl~~D~~i~iw~~~g~~~ 319 (434)
|.++++ . |+.+++|++....+
T Consensus 325 ~~~~~s--~------~~~~~~~~l~~~~~ 345 (402)
T 2aq5_A 325 RGLEVN--K------CEIARFYKLHERKC 345 (402)
T ss_dssp GGSCGG--G------TEEEEEEEEETTEE
T ss_pred ccccee--c------ceeEEEEEcCCCcE
Confidence 998764 4 77999999976543
No 86
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.93 E-value=2.9e-23 Score=200.08 Aligned_cols=265 Identities=8% Similarity=0.066 Sum_probs=179.4
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe--cCCeEEEEeCCC
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM--ATNEIQFFDTTD 79 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~--~~~~i~v~~~~~ 79 (434)
|++++|||||++|++++ .+ .++|||+.+++.+..... ..+..+.|++++++++.. .+++|++||...
T Consensus 22 V~~v~fs~dg~~la~g~-----~~-~~~iw~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~ 90 (355)
T 3vu4_A 22 VTDYEFNQDQSCLILST-----LK-SFEIYNVHPVAHIMSQEM-----RHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVK 90 (355)
T ss_dssp CCEEEECTTSSEEEEEC-----SS-EEEEEEETTEEEEEEEEC-----SCCCEEEECTTSSEEEEECSSTTEEEEEETTT
T ss_pred eEEEEECCCCCEEEEEc-----CC-EEEEEecCCcceeeeeec-----CCeEEEEEcCCCCEEEEEECCccEEEEEECCC
Confidence 78999999999999877 34 589999998877655432 234578899998887654 346999999887
Q ss_pred CCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEE
Q 013871 80 FPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAV 159 (434)
Q Consensus 80 ~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~ 159 (434)
........ +...|.++.++++. +++. ..+.|++|++.+. .+.+..... ....+.+++ ..+++
T Consensus 91 ~~~~~~~~-~~~~v~~v~~~~~~---~~~~------~~~~i~i~d~~~~--~~~~~~~~~---~~~~~~~s~--~~la~- 152 (355)
T 3vu4_A 91 KQDVSRIK-VDAPVKDLFLSREF---IVVS------YGDVISVFKFGNP--WKRITDDIR---FGGVCEFSN--GLLVY- 152 (355)
T ss_dssp TEEEEEEE-CSSCEEEEEECSSE---EEEE------ETTEEEEEESSTT--CCBSSCCEE---EEEEEEEET--TEEEE-
T ss_pred CcEEEEEE-CCCceEEEEEcCCE---EEEE------EcCEEEEEECCCC--ceeeEEecc---CCceEEEEc--cEEEE-
Confidence 54322222 33468899998762 2222 1357999999872 144433332 222334444 44433
Q ss_pred EEecccccCceeecceeEEEEeeCCcc---------------e-eeeecCCCCCeEEEEECcCCCEEEEEEccCCCe-EE
Q 013871 160 AQSDVDKTNQSYYGESKLNYLTTDGTH---------------E-GLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPAS-AT 222 (434)
Q Consensus 160 ~~~~~d~~~~~~~g~~~l~~l~~~~~~---------------~-~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~-v~ 222 (434)
++...|...+ +|.+ .... . ......+.++|.+++|+|+|+.|+ +++.|++ |+
T Consensus 153 ~sg~~~g~v~-------iwd~--~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~--s~s~d~~~v~ 221 (355)
T 3vu4_A 153 SNEFNLGQIH-------ITKL--QSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVA--TCSQDGTIIR 221 (355)
T ss_dssp EESSCTTCEE-------EEEC--CC------------------CCEEECCCSSCEEEEEECTTSSEEE--EEETTCSEEE
T ss_pred eCCCcCcEEE-------EEEC--CCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEE--EEeCCCCEEE
Confidence 2222333332 2322 2211 0 122234678999999999999998 6888998 99
Q ss_pred EEecc-cceeEEe----CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEE--EEE-------------------
Q 013871 223 IFNKK-CRPILEL----GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQ--LGT------------------- 276 (434)
Q Consensus 223 l~d~~-~~~~~~~----~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~--i~~------------------- 276 (434)
+||++ +..+..+ |...+++++|||+|++|++++ .+|.|+|||+++... ...
T Consensus 222 iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s---~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (355)
T 3vu4_A 222 VFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVS---DKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNF 298 (355)
T ss_dssp EEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEE---TTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEE
T ss_pred EEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEE---CCCEEEEEEccCCCCcccccccceeeccccccccceeEE
Confidence 99996 4555544 678899999999999999999 557999999875421 111
Q ss_pred -eeC---CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec
Q 013871 277 -TRA---ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN 315 (434)
Q Consensus 277 -~~~---~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~ 315 (434)
+.. .....++|+|||++|++++. |+.+++|++.
T Consensus 299 ~~~~~~~~~~~~~a~~~d~~~l~~~~~------dg~~~~~~~~ 335 (355)
T 3vu4_A 299 KLSVDKHVRGCKIAWISESSLVVVWPH------TRMIETFKVV 335 (355)
T ss_dssp ECCCCTTCCCCEEEESSSSEEEEEETT------TTEEEEEEEE
T ss_pred EeccCCCCCceEEEEeCCCCEEEEEeC------CCeEEEEEEE
Confidence 111 11255899999999999998 9999999984
No 87
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.93 E-value=2.7e-23 Score=219.25 Aligned_cols=314 Identities=10% Similarity=0.040 Sum_probs=204.9
Q ss_pred cceEEecCCCcEEEEEecCCCCC-CC-----cEEEEEcCCCcEEEEEeecCcCC---------------------CCCCe
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQ-EK-----NVILWKTETGEAVYQLFQKNMTK---------------------TTWPS 54 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~-d~-----~v~iWd~~~g~~~~~~~~~~~~~---------------------~~~~~ 54 (434)
|.+++|||||++|++.+ . |+ +|++||+.+|+....+..+.... ..+..
T Consensus 39 ~~~~~~SpdG~~la~~~-----~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 113 (741)
T 2ecf_A 39 LMKPKVAPDGSRVTFLR-----GKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVD 113 (741)
T ss_dssp CEEEEECTTSSEEEEEE-----CCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCC
T ss_pred CCCceEecCCCEEEEEe-----ccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcce
Confidence 67899999999999988 4 55 89999999998766654432110 12558
Q ss_pred eeecCCCcEEEEecCCeEEEEeCCCCC--CceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCC
Q 013871 55 IRFSSDEAVACRMATNEIQFFDTTDFP--KGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQ 132 (434)
Q Consensus 55 ~~~S~d~~~la~~~~~~i~v~~~~~~~--~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~ 132 (434)
++|||||++|+++.+++|.+|++.... .......+...+..++|||+ +..|++... ..|.+|++.. +.
T Consensus 114 ~~~SpDg~~l~~~~~~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPD-G~~la~~~~------~~i~~~d~~~---g~ 183 (741)
T 2ecf_A 114 YQWSPDAQRLLFPLGGELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPK-GGFVSFIRG------RNLWVIDLAS---GR 183 (741)
T ss_dssp CEECTTSSEEEEEETTEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTT-SSEEEEEET------TEEEEEETTT---TE
T ss_pred eEECCCCCEEEEEeCCcEEEEECCCCCcceEEEcccCCcccccccCCCC-CCEEEEEeC------CcEEEEecCC---CC
Confidence 999999999999988999999998751 11222333456899999999 566655431 3799999876 33
Q ss_pred ceeeeeeccc----------------ceeEEEECCCCCeEEEEEEecccccCc---------------ee-------ecc
Q 013871 133 PLARRSFFRC----------------STVQLNWNRGSTGLLAVAQSDVDKTNQ---------------SY-------YGE 174 (434)
Q Consensus 133 ~i~~~~~~~~----------------~~~~~~ws~~G~~l~~~~~~~~d~~~~---------------~~-------~g~ 174 (434)
.......... ....+.|||||+.|++...... .... .. .+.
T Consensus 184 ~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~-~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~ 262 (741)
T 2ecf_A 184 QMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDES-PVPVQKRYEVYADRTDVIEQRYPAAGDANVQ 262 (741)
T ss_dssp EEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECT-TSCEEEEEEECSSCEEEEEEECCBTTSCCCE
T ss_pred EEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCC-CCceEecCCCCCCcccceEeecCCCCCCCCe
Confidence 3222111111 1357999999999887643211 0000 00 022
Q ss_pred eeEEEEeeCC-cceeeeecC--CCCCeEEEEECcCCCEEEEEEcc---CCCeEEEEecccceeEEe---CCc----CeeE
Q 013871 175 SKLNYLTTDG-THEGLVPLR--KEGPVHDVQWSYSGSEFAVVYGF---MPASATIFNKKCRPILEL---GSG----PYNT 241 (434)
Q Consensus 175 ~~l~~l~~~~-~~~~~v~l~--~~~~i~~v~wspdg~~~av~~g~---~~~~v~l~d~~~~~~~~~---~~~----~~~~ 241 (434)
..|+.+++.+ .....+... +...+.+++| |||+.+++.... .+..|.+||+.......+ +.. .+..
T Consensus 263 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~ 341 (741)
T 2ecf_A 263 VKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNS 341 (741)
T ss_dssp EEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSC
T ss_pred eEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCc
Confidence 3677777766 543333322 3567889999 999999976432 234899999865433322 222 4468
Q ss_pred EEECCCCCeEEEEecCCCCCeEEEEEcc-CCEEEEEeeCC--CceEE-EECCCCCEEEEEEcCCceeeCC--cEEEEeec
Q 013871 242 VRWNPKGKFLCLAGFGNLPGDMAFWDYV-DGKQLGTTRAE--CSVTS-EWSPDGRYFMTATTAPRLQIDN--GIKIFHHN 315 (434)
Q Consensus 242 i~~SP~g~~l~~~~~~~~~g~i~iwd~~-~~~~i~~~~~~--~~~~~-~wspdg~~l~tas~~prl~~D~--~i~iw~~~ 315 (434)
++|||||+++++++ .+|.+.||.++ +++ +..+..+ .+..+ .|||||+.|++.+.. |+ .++||++.
T Consensus 342 ~~~spdg~~~~~~~---~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~-----~~~~~~~l~~~~ 412 (741)
T 2ecf_A 342 LRFLDDGSILWSSE---RTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGI-----ESARESQIYAVP 412 (741)
T ss_dssp CEECTTSCEEEEEC---TTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECS-----SCTTCBEEEEEE
T ss_pred eEECCCCeEEEEec---CCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeC-----CCCceEEEEEEE
Confidence 99999999777765 34556666544 333 5555443 34455 699999998777662 44 89999984
Q ss_pred --Cceeeeee-cccceeeEEEcCCCCCCC
Q 013871 316 --GSLFFKKM-FDKLFQAEWKPVSPDKFG 341 (434)
Q Consensus 316 --g~~~~~~~-~~~~~~~~w~p~~~~~~~ 341 (434)
|..+.... ...+..+.|+|++..++.
T Consensus 413 ~~g~~~~~l~~~~~~~~~~~spdg~~l~~ 441 (741)
T 2ecf_A 413 LQGGQPQRLSKAPGMHSASFARNASVYVD 441 (741)
T ss_dssp TTCCCCEECCCSCSEEEEEECTTSSEEEE
T ss_pred cCCCCeeecccCCCceEEEECCCCCEEEE
Confidence 55333322 345678899998876553
No 88
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.93 E-value=1.8e-23 Score=202.32 Aligned_cols=202 Identities=8% Similarity=-0.001 Sum_probs=141.2
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCC
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFP 81 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~ 81 (434)
|++++|||||++|++++ +..|+.|+|||+.+++++..+.+. ..+.+++|||||++++++.++.+.+|+.....
T Consensus 136 ~~~v~fSpDg~~la~as---~~~d~~i~iwd~~~~~~~~~~~~~----~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~ 208 (365)
T 4h5i_A 136 TKLVYISREGTVAAIAS---SKVPAIMRIIDPSDLTEKFEIETR----GEVKDLHFSTDGKVVAYITGSSLEVISTVTGS 208 (365)
T ss_dssp EEEEEECTTSSCEEEEE---SCSSCEEEEEETTTTEEEEEEECS----SCCCEEEECTTSSEEEEECSSCEEEEETTTCC
T ss_pred EEEEEEcCCCCEEEEEE---CCCCCEEEEeECCCCcEEEEeCCC----CceEEEEEccCCceEEeccceeEEEEEeccCc
Confidence 56899999999998776 236899999999999998887543 45779999999999999998888888876644
Q ss_pred Cceeee--eecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEE
Q 013871 82 KGILYR--LRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAV 159 (434)
Q Consensus 82 ~~~~~~--~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~ 159 (434)
...... .+...|..++|+|++ ..++....+ .+....+++|++... ......
T Consensus 209 ~~~~~~~~~~~~~v~~v~fspdg-~~l~~~s~d-~~~~~~i~~~~~~~~-------------------------~~~~~~ 261 (365)
T 4h5i_A 209 CIARKTDFDKNWSLSKINFIADD-TVLIAASLK-KGKGIVLTKISIKSG-------------------------NTSVLR 261 (365)
T ss_dssp EEEEECCCCTTEEEEEEEEEETT-EEEEEEEES-SSCCEEEEEEEEETT-------------------------EEEEEE
T ss_pred ceeeeecCCCCCCEEEEEEcCCC-CEEEEEecC-CcceeEEeecccccc-------------------------eeccee
Confidence 221111 122346777777773 333322211 112223444444220 000000
Q ss_pred EEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-ceeEEe---C
Q 013871 160 AQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL---G 235 (434)
Q Consensus 160 ~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~-~~~~~~---~ 235 (434)
... ...+..+|.+++|||||++|| +|+.|+.|+|||++. +.+..+ |
T Consensus 262 -----------------~~~-----------~~~~~~~V~~~~~Spdg~~la--sgs~D~~V~iwd~~~~~~~~~~~~gH 311 (365)
T 4h5i_A 262 -----------------SKQ-----------VTNRFKGITSMDVDMKGELAV--LASNDNSIALVKLKDLSMSKIFKQAH 311 (365)
T ss_dssp -----------------EEE-----------EESSCSCEEEEEECTTSCEEE--EEETTSCEEEEETTTTEEEEEETTSS
T ss_pred -----------------eee-----------ecCCCCCeEeEEECCCCCceE--EEcCCCEEEEEECCCCcEEEEecCcc
Confidence 000 011257899999999999998 578899999999964 555554 7
Q ss_pred CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccC
Q 013871 236 SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD 270 (434)
Q Consensus 236 ~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~ 270 (434)
...|++++|||||++|++++ .|++|+|||+..
T Consensus 312 ~~~V~~v~fSpdg~~laS~S---~D~tvrvw~ip~ 343 (365)
T 4h5i_A 312 SFAITEVTISPDSTYVASVS---AANTIHIIKLPL 343 (365)
T ss_dssp SSCEEEEEECTTSCEEEEEE---TTSEEEEEECCT
T ss_pred cCCEEEEEECCCCCEEEEEe---CCCeEEEEEcCC
Confidence 88999999999999999999 556999999853
No 89
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.92 E-value=7.3e-24 Score=205.71 Aligned_cols=277 Identities=10% Similarity=0.083 Sum_probs=189.3
Q ss_pred EEEcCCCcEEEEEeecCcCCCCCCeeeecCCC-cEEEEe-cCCeEEEEeCCCCCCceeeee--ecCCeeEEEEeCCCCCe
Q 013871 30 LWKTETGEAVYQLFQKNMTKTTWPSIRFSSDE-AVACRM-ATNEIQFFDTTDFPKGILYRL--RVPGVAAFEVSKAPGSH 105 (434)
Q Consensus 30 iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~-~~la~~-~~~~i~v~~~~~~~~~~~~~~--~~~~v~~~~~sp~~~~~ 105 (434)
+|++.+.+....+..+ ...+.+++|+||+ ++|+++ .++.|++|++........... +...|.+++|+|+++..
T Consensus 57 ~~~~~~~~~~~~~~~h---~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 133 (383)
T 3ei3_B 57 IRSLKSYKLHRTASPF---DRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQ 133 (383)
T ss_dssp HHHHTTCEEEEEECCC---SSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEE
T ss_pred cccccccceEEeccCC---CCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCE
Confidence 3444556666666554 3677799999999 888888 468999999987654333332 56689999999953455
Q ss_pred EEEEecCCCCCCceEEEEEcCCCCCCCceeeeeec---ccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEee
Q 013871 106 VAVFVPESKGSPASVQIYACGKDLQSQPLARRSFF---RCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTT 182 (434)
Q Consensus 106 ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~---~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~ 182 (434)
+++. +.++.|++|++.. ..+.....+ ...+..+.|+|+|+.|+... .|.. ++.+++
T Consensus 134 l~s~-----~~d~~i~iwd~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d~~---------i~i~d~ 192 (383)
T 3ei3_B 134 LFVS-----SIRGATTLRDFSG----SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGD---STGR---------LLLLGL 192 (383)
T ss_dssp EEEE-----ETTTEEEEEETTS----CEEEEEECCCCSSCCEEEEEEETTTTEEEEEE---TTSE---------EEEEET
T ss_pred EEEE-----eCCCEEEEEECCC----CceEEEeccCCCCCCeEEEEECCCCCEEEEEC---CCCC---------EEEEEC
Confidence 5542 4567999999974 333333322 35688999999999765432 2322 344444
Q ss_pred CCcceeeeecCCCCCeEEEEECcCCC-EEEEEEccCCCeEEEEeccc-----ceeEEe-CCcCeeEEEECC-CCCeEEEE
Q 013871 183 DGTHEGLVPLRKEGPVHDVQWSYSGS-EFAVVYGFMPASATIFNKKC-----RPILEL-GSGPYNTVRWNP-KGKFLCLA 254 (434)
Q Consensus 183 ~~~~~~~v~l~~~~~i~~v~wspdg~-~~av~~g~~~~~v~l~d~~~-----~~~~~~-~~~~~~~i~~SP-~g~~l~~~ 254 (434)
.+. .......+.+.|.+++|+|+++ .|+ ++..|+.|++||++. ..+..+ +...+.+++|+| +|++|+++
T Consensus 193 ~~~-~~~~~~~h~~~v~~~~~~~~~~~~l~--s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~ 269 (383)
T 3ei3_B 193 DGH-EIFKEKLHKAKVTHAEFNPRCDWLMA--TSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTT 269 (383)
T ss_dssp TSC-EEEEEECSSSCEEEEEECSSCTTEEE--EEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEE
T ss_pred CCC-EEEEeccCCCcEEEEEECCCCCCEEE--EEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEE
Confidence 332 2222223578999999999998 555 577799999999974 333333 788999999999 99999999
Q ss_pred ecCCCCCeEEEEEccCCEEEEEeeCC--------CceEEEECCCCCEEE---------EEEcCCceeeCCcEEEEee-cC
Q 013871 255 GFGNLPGDMAFWDYVDGKQLGTTRAE--------CSVTSEWSPDGRYFM---------TATTAPRLQIDNGIKIFHH-NG 316 (434)
Q Consensus 255 ~~~~~~g~i~iwd~~~~~~i~~~~~~--------~~~~~~wspdg~~l~---------tas~~prl~~D~~i~iw~~-~g 316 (434)
+ .+|.|++||+.+++.+..+..+ ....+.|+|++..++ +++. |+.|+|||+ +|
T Consensus 270 ~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~s~s~------d~~i~iwd~~~~ 340 (383)
T 3ei3_B 270 D---QRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQLLLND------KRTIDIYDANSG 340 (383)
T ss_dssp E---SSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTTCTTC------CCCEEEEETTTC
T ss_pred c---CCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCcccccCC------CCeEEEEecCCC
Confidence 8 5679999999887544433321 112245555555444 3345 999999998 56
Q ss_pred ceeeeee----cccceeeEEEcCCCCCCCC
Q 013871 317 SLFFKKM----FDKLFQAEWKPVSPDKFGD 342 (434)
Q Consensus 317 ~~~~~~~----~~~~~~~~w~p~~~~~~~~ 342 (434)
+++.... ...+..++|+|++..++..
T Consensus 341 ~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~ 370 (383)
T 3ei3_B 341 GLVHQLRDPNAAGIISLNKFSPTGDVLASG 370 (383)
T ss_dssp CEEEEECBTTBCSCCCEEEECTTSSEEEEE
T ss_pred ceeeeecCCCCCceEEEEEEecCccEEEEe
Confidence 6666553 2346666999998877665
No 90
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.92 E-value=2.8e-23 Score=217.88 Aligned_cols=264 Identities=16% Similarity=0.170 Sum_probs=194.4
Q ss_pred CCCCCCeeeecCCC-cEEEEec-CCeEEEEeCCCCCCc-----eeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceE
Q 013871 48 TKTTWPSIRFSSDE-AVACRMA-TNEIQFFDTTDFPKG-----ILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASV 120 (434)
Q Consensus 48 ~~~~~~~~~~S~d~-~~la~~~-~~~i~v~~~~~~~~~-----~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v 120 (434)
|...+.+++|++++ .+|++++ |++|++|++...... .....|...|.+++|+|+ +.+++. ++.++.|
T Consensus 381 H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~-g~~l~s-----gs~Dg~v 454 (694)
T 3dm0_A 381 HTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSD-GQFALS-----GSWDGEL 454 (694)
T ss_dssp CSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTT-SSEEEE-----EETTSEE
T ss_pred CCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCC-CCEEEE-----EeCCCcE
Confidence 44778899999875 6888874 689999998753321 123345667999999998 455553 3567899
Q ss_pred EEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeee---cCCCCC
Q 013871 121 QIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVP---LRKEGP 197 (434)
Q Consensus 121 ~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~---l~~~~~ 197 (434)
+||++.+ +..+.....|...+.++.|+|+|+.|+.. ..|.+.+.|. ..+.....+. ..+...
T Consensus 455 ~vwd~~~---~~~~~~~~~h~~~v~~~~~s~~~~~l~s~---s~D~~i~iwd---------~~~~~~~~~~~~~~~h~~~ 519 (694)
T 3dm0_A 455 RLWDLAA---GVSTRRFVGHTKDVLSVAFSLDNRQIVSA---SRDRTIKLWN---------TLGECKYTISEGGEGHRDW 519 (694)
T ss_dssp EEEETTT---TEEEEEEECCSSCEEEEEECTTSSCEEEE---ETTSCEEEEC---------TTSCEEEEECSSTTSCSSC
T ss_pred EEEECCC---CcceeEEeCCCCCEEEEEEeCCCCEEEEE---eCCCEEEEEE---------CCCCcceeeccCCCCCCCc
Confidence 9999987 77788888899999999999999986543 3555555443 2221111111 124678
Q ss_pred eEEEEECcCCCEEEEEEccCCCeEEEEecccc-eeEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEE
Q 013871 198 VHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQL 274 (434)
Q Consensus 198 i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~-~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i 274 (434)
|.+++|+|++....+++++.|+.|++||++.. ....+ |.+.+++++|||+|++|++++ .+|.|+|||+.+++.+
T Consensus 520 v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~---~Dg~i~iwd~~~~~~~ 596 (694)
T 3dm0_A 520 VSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGG---KDGVVLLWDLAEGKKL 596 (694)
T ss_dssp EEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE---TTSBCEEEETTTTEEE
T ss_pred EEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEe---CCCeEEEEECCCCceE
Confidence 99999999985323336888999999999744 33344 788999999999999999999 6679999999999998
Q ss_pred EEeeCC-CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCce-eeeeec---------------------ccceeeE
Q 013871 275 GTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL-FFKKMF---------------------DKLFQAE 331 (434)
Q Consensus 275 ~~~~~~-~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~-~~~~~~---------------------~~~~~~~ 331 (434)
..+..+ .+..++|+|++.+|++++ |++|+|||+.... +..... -.+..+.
T Consensus 597 ~~~~~~~~v~~~~~sp~~~~l~~~~-------~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 669 (694)
T 3dm0_A 597 YSLEANSVIHALCFSPNRYWLCAAT-------EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLN 669 (694)
T ss_dssp ECCBCSSCEEEEEECSSSSEEEEEE-------TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEE
T ss_pred EEecCCCcEEEEEEcCCCcEEEEEc-------CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEE
Confidence 888766 455599999999887765 7889999996543 332211 0146789
Q ss_pred EEcCCCCCCCC
Q 013871 332 WKPVSPDKFGD 342 (434)
Q Consensus 332 w~p~~~~~~~~ 342 (434)
|+|++..|++.
T Consensus 670 ~spdg~~l~sg 680 (694)
T 3dm0_A 670 WSADGSTLFSG 680 (694)
T ss_dssp ECTTSSEEEEE
T ss_pred EcCCCCEEEEE
Confidence 99998888765
No 91
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.92 E-value=4.3e-23 Score=204.04 Aligned_cols=246 Identities=10% Similarity=0.168 Sum_probs=174.9
Q ss_pred CCCCCeeeecCC-CcEEEEec-CCeEEEEeCCC----------CCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCC
Q 013871 49 KTTWPSIRFSSD-EAVACRMA-TNEIQFFDTTD----------FPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGS 116 (434)
Q Consensus 49 ~~~~~~~~~S~d-~~~la~~~-~~~i~v~~~~~----------~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~ 116 (434)
...+.+++|+|+ +.+||++. ++.|++|++.. .........|...+.+++|+|++...+++ ++.
T Consensus 128 ~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s-----~~~ 202 (430)
T 2xyi_A 128 EGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLS-----ASD 202 (430)
T ss_dssp SSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEE-----ECT
T ss_pred CCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEE-----EeC
Confidence 367789999997 67888875 67999999865 23333344556679999999996546654 355
Q ss_pred CceEEEEEcCCCCCC-C---ceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCc--ceeee
Q 013871 117 PASVQIYACGKDLQS-Q---PLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGT--HEGLV 190 (434)
Q Consensus 117 ~~~v~i~~~~~~~~~-~---~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~--~~~~v 190 (434)
++.|++|++...... . .......+...+..+.|+|++..+++.++ .|.. |+.+++... .....
T Consensus 203 dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~--~dg~---------i~i~d~~~~~~~~~~~ 271 (430)
T 2xyi_A 203 DHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVA--DDQK---------LMIWDTRNNNTSKPSH 271 (430)
T ss_dssp TSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEE--TTSE---------EEEEETTCSCSSSCSE
T ss_pred CCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEe--CCCe---------EEEEECCCCCCCccee
Confidence 689999999762111 1 13344567778899999996555544432 2222 333333322 11222
Q ss_pred ec-CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc--ceeEEe--CCcCeeEEEECCCCC-eEEEEecCCCCCeEE
Q 013871 191 PL-RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC--RPILEL--GSGPYNTVRWNPKGK-FLCLAGFGNLPGDMA 264 (434)
Q Consensus 191 ~l-~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~--~~~~~~--~~~~~~~i~~SP~g~-~l~~~~~~~~~g~i~ 264 (434)
.+ .+..+|.+++|+|++..+++ +|..++.|.+||++. .++..+ |...+.++.|+|+|+ +|++++ .+|.|.
T Consensus 272 ~~~~~~~~v~~i~~~p~~~~~l~-tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~---~d~~i~ 347 (430)
T 2xyi_A 272 TVDAHTAEVNCLSFNPYSEFILA-TGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSG---TDRRLH 347 (430)
T ss_dssp EEECCSSCEEEEEECSSCTTEEE-EEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEE---TTSCCE
T ss_pred EeecCCCCeEEEEeCCCCCCEEE-EEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEe---CCCcEE
Confidence 22 45789999999999986444 578899999999974 344444 789999999999996 577777 557999
Q ss_pred EEEccC--------------CEEEEEeeCC--CceEEEECCCCC-EEEEEEcCCceeeCCcEEEEeecCceee
Q 013871 265 FWDYVD--------------GKQLGTTRAE--CSVTSEWSPDGR-YFMTATTAPRLQIDNGIKIFHHNGSLFF 320 (434)
Q Consensus 265 iwd~~~--------------~~~i~~~~~~--~~~~~~wspdg~-~l~tas~~prl~~D~~i~iw~~~g~~~~ 320 (434)
|||+.. .+.+..+.+| .+..++|+|++. +|++++. |+.|+||++....+.
T Consensus 348 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~------dg~i~iw~~~~~~~~ 414 (430)
T 2xyi_A 348 VWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSE------DNIMQVWQMAENVYN 414 (430)
T ss_dssp EEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEET------TSEEEEEEECHHHHC
T ss_pred EEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEEC------CCCEEEeEccccccc
Confidence 999986 3566666665 467799999999 8888888 999999999776544
No 92
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.92 E-value=4.1e-23 Score=203.43 Aligned_cols=242 Identities=14% Similarity=0.191 Sum_probs=184.8
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF 80 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~ 80 (434)
|++|+|||+|++|++++ .|+.|+|||+.++++++.+..+. ..+ ..++.++.+|+++. ++.+++|+....
T Consensus 150 V~sv~fspdg~~lasgs-----~Dg~v~iWd~~~~~~~~~~~~h~---~~v--~~~s~~~~~l~sgs~d~~i~~~d~~~~ 219 (420)
T 4gga_A 150 ISSVAWIKEGNYLAVGT-----SSAEVQLWDVQQQKRLRNMTSHS---ARV--GSLSWNSYILSSGSRSGHIHHHDVRVA 219 (420)
T ss_dssp EEEEEECTTSSEEEEEE-----TTSCEEEEETTTTEEEEEECCCS---SCE--EEEEEETTEEEEEETTSEEEEEETTSS
T ss_pred EEEEEECCCCCEEEEEE-----CCCeEEEEEcCCCcEEEEEeCCC---Cce--EEEeeCCCEEEEEeCCCceeEeeeccc
Confidence 78999999999999999 89999999999999999887653 444 34555788898885 679999998764
Q ss_pred CCc-eeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCC-CCceeeeeecccceeEEEECCCCCeEEE
Q 013871 81 PKG-ILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQ-SQPLARRSFFRCSTVQLNWNRGSTGLLA 158 (434)
Q Consensus 81 ~~~-~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~-~~~i~~~~~~~~~~~~~~ws~~G~~l~~ 158 (434)
... .....+...+..+.++|+ +..++.. +.++.+++|++..... ...+.....+...+..+.|+|.+..+++
T Consensus 220 ~~~~~~~~~h~~~~~~~~~~~~-g~~l~s~-----~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la 293 (420)
T 4gga_A 220 EHHVATLSGHSQEVCGLRWAPD-GRHLASG-----GNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLA 293 (420)
T ss_dssp SCEEEEEECCSSCEEEEEECTT-SSEEEEE-----ETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEE
T ss_pred ceeeEEecccccceeeeeecCC-CCeeeee-----eccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEE
Confidence 332 233455677899999998 4555532 4567899999876321 2234556667788899999999988877
Q ss_pred EEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-cceeEEe--C
Q 013871 159 VAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL--G 235 (434)
Q Consensus 159 ~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~-~~~~~~~--~ 235 (434)
.+....|.+.+.| ++... .....+.....+.++.|+|+++.+++.+|+.++.|.|||.. ...+..+ |
T Consensus 294 ~~~gs~D~~I~iw---------d~~t~-~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH 363 (420)
T 4gga_A 294 TGGGTSDRHIRIW---------NVCSG-ACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGH 363 (420)
T ss_dssp EEECTTTCEEEEE---------ETTTT-EEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCC
T ss_pred EEeecCCCEEEEE---------eCCcc-ccceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCC
Confidence 7665556555433 33332 23333444678999999999999998888889999999995 5566666 7
Q ss_pred CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCE
Q 013871 236 SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK 272 (434)
Q Consensus 236 ~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~ 272 (434)
.+.|++++|||||++|++|+ .||+|+|||+.+..
T Consensus 364 ~~~V~~l~~spdg~~l~S~s---~D~tvriWdv~~~~ 397 (420)
T 4gga_A 364 TSRVLSLTMSPDGATVASAA---ADETLRLWRCFELD 397 (420)
T ss_dssp SSCEEEEEECTTSSCEEEEE---TTTEEEEECCSCSS
T ss_pred CCCEEEEEEcCCCCEEEEEe---cCCeEEEEECCCCC
Confidence 89999999999999999999 56799999987653
No 93
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.92 E-value=3.5e-24 Score=213.19 Aligned_cols=250 Identities=11% Similarity=0.038 Sum_probs=175.7
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCC
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFP 81 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~ 81 (434)
|.+|+|||||++|||.+ .|++|+ |...++.+ .+ |...+.+++|+||| .++.+.+|+.....
T Consensus 18 v~sv~~SpDG~~iASas-----~D~TV~--d~~~~~~l---~g---h~~~v~~V~FsPdg------~~~~~~~~~~~~~~ 78 (588)
T 2j04_A 18 KNNLTWARDGTLYLTTF-----PDISIG--QPKYAKDI---NC---NSKNLFHVKEFPLE------FENKLDFELAQQNG 78 (588)
T ss_dssp SCCEEECTTSCEEEECS-----SSEEEE--EECCCSCC---SS---BGGGTEEEEEECCC------CCCTTTTSCCCSSC
T ss_pred EEEEEECCCCCEEEEEc-----CCceee--ccccccee---cC---CCccEEEEEECCCC------CcceEEEEeCCCce
Confidence 68999999999999998 889999 77666554 22 33556699999999 44555555543211
Q ss_pred Cceeee-eecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeeccc-----ceeEEEECCCCCe
Q 013871 82 KGILYR-LRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRC-----STVQLNWNRGSTG 155 (434)
Q Consensus 82 ~~~~~~-~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~-----~~~~~~ws~~G~~ 155 (434)
... .+.+.|.+++|||+ +..+|+. +.++.|+||+.. ..+.... +.. .+.+++|||||+.
T Consensus 79 ---~~~~~~~~~V~~vawSPd-G~~LAs~-----s~dg~V~iwd~~-----~~l~~l~-~~~~~~~~sv~svafSPDG~~ 143 (588)
T 2j04_A 79 ---LLNSQPVCYPRVCKPSPI-DDWMAVL-----SNNGNVSVFKDN-----KMLTNLD-SKGNLSSRTYHCFEWNPIESS 143 (588)
T ss_dssp ---SSTTSCSCCEEEEEECSS-SSCEEEE-----ETTSCEEEEETT-----EEEEECC-CSSCSTTTCEEEEEECSSSSC
T ss_pred ---EeecCCCCcEEEEEECCC-CCEEEEE-----eCCCcEEEEeCC-----ceeeecc-CCCccccccEEEEEEcCCCCE
Confidence 111 22567999999999 5666643 456789999952 3444444 443 4779999999999
Q ss_pred EEEEEEecccccCceeecceeEEEEeeCCcce--------eeee---cCCCCCeEEEEECcCCCEEEEEEccCCCeEEEE
Q 013871 156 LLAVAQSDVDKTNQSYYGESKLNYLTTDGTHE--------GLVP---LRKEGPVHDVQWSYSGSEFAVVYGFMPASATIF 224 (434)
Q Consensus 156 l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~--------~~v~---l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~ 224 (434)
|+... .|.+.+ ||.+. +... ..+. -.+...|.+++|+||| ++ ++..|+.+++|
T Consensus 144 LAsgs---~DGtVk-------IWd~~--~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--La--ass~D~tVrlW 207 (588)
T 2j04_A 144 IVVGN---EDGELQ-------FFSIR--KNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LV--AALSNNSVFSM 207 (588)
T ss_dssp EEEEE---TTSEEE-------EEECC--CCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EE--EEETTCCEEEE
T ss_pred EEEEc---CCCEEE-------EEECC--CCccccccceeeeeeecccccccccEEEEEEcCCc--EE--EEeCCCeEEEE
Confidence 76642 444444 33332 2210 1111 2235799999999999 44 46668999999
Q ss_pred eccccee----E---EeCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEE--CCCCCE
Q 013871 225 NKKCRPI----L---ELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEW--SPDGRY 293 (434)
Q Consensus 225 d~~~~~~----~---~~~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~w--spdg~~ 293 (434)
|+..+.. . ..|...|.+++|+ |+.|++++ + |.|++||+.+++......+| .+..++| +|||..
T Consensus 208 d~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~---~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~ 281 (588)
T 2j04_A 208 TVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-P---GYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTI 281 (588)
T ss_dssp CCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-S---SEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEE
T ss_pred ECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe-C---CeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCE
Confidence 9975542 2 2466789999999 78888886 2 69999999998773333244 5666999 999999
Q ss_pred EEEEEcCCceeeCCcEEEEee
Q 013871 294 FMTATTAPRLQIDNGIKIFHH 314 (434)
Q Consensus 294 l~tas~~prl~~D~~i~iw~~ 314 (434)
|++|.. ||+ ++|.+
T Consensus 282 La~a~e------dG~-klw~~ 295 (588)
T 2j04_A 282 LLMSNK------TSY-KVLLE 295 (588)
T ss_dssp EEECSS------CEE-EEEES
T ss_pred EEEEcC------CCC-EEEee
Confidence 999997 777 77775
No 94
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.92 E-value=1.4e-22 Score=197.04 Aligned_cols=260 Identities=16% Similarity=0.211 Sum_probs=187.0
Q ss_pred CCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCCC------CceeeeeecCCeeEEEEeCC----CC--CeEEEEecCCC
Q 013871 48 TKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDFP------KGILYRLRVPGVAAFEVSKA----PG--SHVAVFVPESK 114 (434)
Q Consensus 48 ~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~~------~~~~~~~~~~~v~~~~~sp~----~~--~~ia~~~~~~~ 114 (434)
|...+.+++|+| ++|+++ .++.|++|++.... .......+...|.++.|+|+ +. ..+++ .
T Consensus 15 h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s-----~ 87 (397)
T 1sq9_A 15 HDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVAT-----T 87 (397)
T ss_dssp SSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEE-----E
T ss_pred hhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEE-----E
Confidence 457888999999 677766 57899999998765 23334455668999999997 40 33433 2
Q ss_pred CCCceEEEEEcCCCCCCCc-----eeeeeec-----ccceeEEEEC----CCCCe-EEEEEEecccccCceeecceeEEE
Q 013871 115 GSPASVQIYACGKDLQSQP-----LARRSFF-----RCSTVQLNWN----RGSTG-LLAVAQSDVDKTNQSYYGESKLNY 179 (434)
Q Consensus 115 ~~~~~v~i~~~~~~~~~~~-----i~~~~~~-----~~~~~~~~ws----~~G~~-l~~~~~~~~d~~~~~~~g~~~l~~ 179 (434)
+.++.|++|++.. ... +.....+ ...+..+.|+ |+|.. |++. + .|... .+|.
T Consensus 88 ~~dg~i~iw~~~~---~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~-~--~dg~i-------~iwd 154 (397)
T 1sq9_A 88 SFSGDLLFYRITR---EDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVAT-D--VKGTT-------YIWK 154 (397)
T ss_dssp ETTSCEEEEEEEE---CTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEE-E--TTSCE-------EEEE
T ss_pred cCCCCEEEEEccC---CcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEE-e--CCCcE-------EEEe
Confidence 3457899999987 454 6666667 5788999999 99998 5543 2 23222 2343
Q ss_pred Eee------CCccee-----eee------cCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-ceeEEe-----C-
Q 013871 180 LTT------DGTHEG-----LVP------LRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL-----G- 235 (434)
Q Consensus 180 l~~------~~~~~~-----~v~------l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~-~~~~~~-----~- 235 (434)
+.. ... .. .+. ..+...|.+++|+|++ .|+ ++..++.|.+||++. ..+..+ |
T Consensus 155 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~--~~~~dg~i~i~d~~~~~~~~~~~~~~~h~ 230 (397)
T 1sq9_A 155 FHPFADESNSLT-LNWSPTLELQGTVESPMTPSQFATSVDISERG-LIA--TGFNNGTVQISELSTLRPLYNFESQHSMI 230 (397)
T ss_dssp EESSSSHHHHTT-TCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEE--EECTTSEEEEEETTTTEEEEEEECCC---
T ss_pred CCccccccccce-eeccCcceeeeeeccccCCCCCceEEEECCCc-eEE--EEeCCCcEEEEECCCCceeEEEecccccc
Confidence 332 111 11 111 2247789999999999 666 578899999999973 444443 4
Q ss_pred --CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC-------------C--CceEEEECCCCCEEEEEE
Q 013871 236 --SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA-------------E--CSVTSEWSPDGRYFMTAT 298 (434)
Q Consensus 236 --~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~-------------~--~~~~~~wspdg~~l~tas 298 (434)
...+.+++|+|+|++|++++.++..|.|++||+.+++.+..+.. | .+..++|+|+|++|++++
T Consensus 231 ~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 310 (397)
T 1sq9_A 231 NNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAG 310 (397)
T ss_dssp CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEE
T ss_pred ccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEe
Confidence 78899999999999999998431127999999999988888875 4 566799999999999999
Q ss_pred cCCceeeCCcEEEEeec-Cceeeeee-----------------------cccceeeEEEcCCC
Q 013871 299 TAPRLQIDNGIKIFHHN-GSLFFKKM-----------------------FDKLFQAEWKPVSP 337 (434)
Q Consensus 299 ~~prl~~D~~i~iw~~~-g~~~~~~~-----------------------~~~~~~~~w~p~~~ 337 (434)
. |+.|+||++. ++++.... ...+..+.|.|++.
T Consensus 311 ~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~ 367 (397)
T 1sq9_A 311 W------DGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGW 367 (397)
T ss_dssp T------TSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTT
T ss_pred C------CCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccc
Confidence 9 9999999994 55555444 56699999999973
No 95
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.92 E-value=1.4e-22 Score=201.37 Aligned_cols=253 Identities=13% Similarity=0.057 Sum_probs=182.8
Q ss_pred CCCeeeecCCCcEEEEecCCeEEEEeCCCCC---Cceeeee---------------------------------------
Q 013871 51 TWPSIRFSSDEAVACRMATNEIQFFDTTDFP---KGILYRL--------------------------------------- 88 (434)
Q Consensus 51 ~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~---~~~~~~~--------------------------------------- 88 (434)
.+.+++|++||++|+++.++.|++|++.+.. .......
T Consensus 6 p~~~v~~s~dg~~l~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (450)
T 2vdu_B 6 PLQNLLTSRDGSLVFAIIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDSIK 85 (450)
T ss_dssp CCCEEEECSSSSEEEEEETTEEEEEEEETTTEEEEEEEEECCC-------------------------------------
T ss_pred cEEEEEecCCCCEEEEEeCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcccc
Confidence 4568999999999998889999999987654 1111110
Q ss_pred ---------------ecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcC--CCCCCCceeeee--ecccceeEEEE
Q 013871 89 ---------------RVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACG--KDLQSQPLARRS--FFRCSTVQLNW 149 (434)
Q Consensus 89 ---------------~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~--~~~~~~~i~~~~--~~~~~~~~~~w 149 (434)
+...|.+++|+|++..++++ ++.++.|+||++. . +..+.... .+...+..+.|
T Consensus 86 ~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~-----~~~dg~v~iwd~~~~~---~~~~~~~~~~~~~~~v~~~~~ 157 (450)
T 2vdu_B 86 RTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIAC-----ADSDKSLLVFDVDKTS---KNVLKLRKRFCFSKRPNAISI 157 (450)
T ss_dssp --------------CCCCCEEEEEECTTSSEEEEE-----EGGGTEEEEEEECSSS---SSCEEEEEEEECSSCEEEEEE
T ss_pred ccCccccCCCCCCCccCCceEEEEEcCCCCEEEEE-----ECCCCeEEEEECcCCC---CceeeeeecccCCCCceEEEE
Confidence 11158999999994333343 2356799999998 5 56666554 44577889999
Q ss_pred CCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceee----eecCCCCCeEEEEECcC---CCEEEEEEccCCCeEE
Q 013871 150 NRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGL----VPLRKEGPVHDVQWSYS---GSEFAVVYGFMPASAT 222 (434)
Q Consensus 150 s~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~----v~l~~~~~i~~v~wspd---g~~~av~~g~~~~~v~ 222 (434)
+|+|+.|++.. .+ | .++.+++....... ....+.+.|.+++|+|+ ++.|+ ++..|+.|+
T Consensus 158 sp~~~~l~~~~---~~-------g--~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~--s~~~d~~i~ 223 (450)
T 2vdu_B 158 AEDDTTVIIAD---KF-------G--DVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFII--TSDRDEHIK 223 (450)
T ss_dssp CTTSSEEEEEE---TT-------S--EEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEE--EEETTSCEE
T ss_pred cCCCCEEEEEe---CC-------C--cEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEE--EEcCCCcEE
Confidence 99999876542 11 1 24555443322111 11235789999999999 77777 577899999
Q ss_pred EEeccc-ceeEE-e--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC------------------
Q 013871 223 IFNKKC-RPILE-L--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE------------------ 280 (434)
Q Consensus 223 l~d~~~-~~~~~-~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~------------------ 280 (434)
+||++. ..+.. + |...+++++|+ +|++|++++ .+|.|+|||+.+++++..+..+
T Consensus 224 vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~---~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (450)
T 2vdu_B 224 ISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAG---GDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQ 299 (450)
T ss_dssp EEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEE---SSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC-----
T ss_pred EEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEe---CCCeEEEEECCCCcEeeeecchhhhhhhhhhccccccccc
Confidence 999964 44444 2 67899999999 999999999 5679999999999887776521
Q ss_pred ---------CceEEEECCCCCEEEEEE-cCCceeeCCcEEEEee--c-C---ceeeeeec-ccceeeEEEcC
Q 013871 281 ---------CSVTSEWSPDGRYFMTAT-TAPRLQIDNGIKIFHH--N-G---SLFFKKMF-DKLFQAEWKPV 335 (434)
Q Consensus 281 ---------~~~~~~wspdg~~l~tas-~~prl~~D~~i~iw~~--~-g---~~~~~~~~-~~~~~~~w~p~ 335 (434)
.+..+.|+|||++|++++ . |+.|+||++ . + ..+..... ..+..+.|.|.
T Consensus 300 ~~~~~~~~~~v~~i~~~~~~~~l~~~~~~------d~~i~iw~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~ 365 (450)
T 2vdu_B 300 NENNDIIEFAVSKIIKSKNLPFVAFFVEA------TKCIIILEMSEKQKGDLALKQIITFPYNVISLSAHND 365 (450)
T ss_dssp -----CBCCCEEEEEECSSSSEEEEEETT------CSEEEEEEECSSSTTCEEEEEEEECSSCEEEEEEETT
T ss_pred ccccccceEEEEEEEEeCCCCEEEEEECC------CCeEEEEEeccCCCCceeeccEeccCCceEEEEecCC
Confidence 355699999999999999 6 999999999 3 2 22222221 57899999994
No 96
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.92 E-value=4.3e-22 Score=197.44 Aligned_cols=283 Identities=12% Similarity=0.134 Sum_probs=207.2
Q ss_pred EecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCCCCce
Q 013871 6 TCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDFPKGI 84 (434)
Q Consensus 6 ~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~~~~~ 84 (434)
+++++|++|++++ .|+.|+|||+.+++.+..+..+. ..+.++.|+ +.+++++ .++.|++||+.+.....
T Consensus 124 ~~~~~g~~l~sg~-----~dg~i~vwd~~~~~~~~~~~~h~---~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~ 193 (445)
T 2ovr_B 124 CLQFCGNRIVSGS-----DDNTLKVWSAVTGKCLRTLVGHT---GGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIH 193 (445)
T ss_dssp EEEEETTEEEEEE-----TTSCEEEEETTTCCEEEECCCCS---SCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEE
T ss_pred EEEEcCCEEEEEE-----CCCcEEEEECCCCcEEEEEcCCC---CCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEE
Confidence 3566799999999 89999999999999998887653 566688887 5577776 57899999998765434
Q ss_pred eeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecc
Q 013871 85 LYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDV 164 (434)
Q Consensus 85 ~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~ 164 (434)
....+...|.++.++++ .+++ .+.++.|++|++.+ ++.+.....+...+..+.| +|..++... .
T Consensus 194 ~~~~h~~~v~~~~~~~~---~l~s-----~s~dg~i~~wd~~~---~~~~~~~~~~~~~v~~~~~--~~~~l~~~~---~ 257 (445)
T 2ovr_B 194 TLYGHTSTVRCMHLHEK---RVVS-----GSRDATLRVWDIET---GQCLHVLMGHVAAVRCVQY--DGRRVVSGA---Y 257 (445)
T ss_dssp EECCCSSCEEEEEEETT---EEEE-----EETTSEEEEEESSS---CCEEEEEECCSSCEEEEEE--CSSCEEEEE---T
T ss_pred EECCCCCcEEEEEecCC---EEEE-----EeCCCEEEEEECCC---CcEEEEEcCCcccEEEEEE--CCCEEEEEc---C
Confidence 44456667889888753 3432 24568999999988 7778888888888889998 667655432 3
Q ss_pred cccCceeecceeEEEEeeCCcceeeeec-CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-cceeEEe--CCcCee
Q 013871 165 DKTNQSYYGESKLNYLTTDGTHEGLVPL-RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL--GSGPYN 240 (434)
Q Consensus 165 d~~~~~~~g~~~l~~l~~~~~~~~~v~l-~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~-~~~~~~~--~~~~~~ 240 (434)
|...+ .++.... .....+ .+.+.|.+++| ++..++ ++..++.|.+||++ ...+..+ +...+.
T Consensus 258 dg~i~---------iwd~~~~-~~~~~~~~~~~~v~~~~~--~~~~l~--~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~ 323 (445)
T 2ovr_B 258 DFMVK---------VWDPETE-TCLHTLQGHTNRVYSLQF--DGIHVV--SGSLDTSIRVWDVETGNCIHTLTGHQSLTS 323 (445)
T ss_dssp TSCEE---------EEEGGGT-EEEEEECCCSSCEEEEEE--CSSEEE--EEETTSCEEEEETTTCCEEEEECCCCSCEE
T ss_pred CCEEE---------EEECCCC-cEeEEecCCCCceEEEEE--CCCEEE--EEeCCCeEEEEECCCCCEEEEEcCCcccEE
Confidence 43333 3333222 222222 24688999999 777777 57789999999996 4445555 566666
Q ss_pred EEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC---C--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec
Q 013871 241 TVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA---E--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN 315 (434)
Q Consensus 241 ~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~---~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~ 315 (434)
++.+ ++++|++++ .+|.|++||+.+++.+..+.. + .+..++|+ +++|++++. |+.|+||++.
T Consensus 324 ~~~~--~~~~l~~~~---~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~------dg~v~iwd~~ 390 (445)
T 2ovr_B 324 GMEL--KDNILVSGN---ADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSD------DGTVKLWDLK 390 (445)
T ss_dssp EEEE--ETTEEEEEE---TTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEET------TSEEEEEETT
T ss_pred EEEE--eCCEEEEEe---CCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeC------CCeEEEEECC
Confidence 6666 577999998 567999999999998888875 3 45557785 689999999 9999999984
Q ss_pred -Cceeeee-------ecccceeeEEEcCCCCCCC
Q 013871 316 -GSLFFKK-------MFDKLFQAEWKPVSPDKFG 341 (434)
Q Consensus 316 -g~~~~~~-------~~~~~~~~~w~p~~~~~~~ 341 (434)
|+.+... +...++.+.|+|.+..+..
T Consensus 391 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~ 424 (445)
T 2ovr_B 391 TGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAV 424 (445)
T ss_dssp TCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEE
T ss_pred CCceeeeeeccccCCCCceEEEEEecCCEEEEEE
Confidence 5555544 2246899999998765544
No 97
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.92 E-value=9.2e-23 Score=201.83 Aligned_cols=260 Identities=12% Similarity=0.125 Sum_probs=188.9
Q ss_pred EecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCce
Q 013871 6 TCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGI 84 (434)
Q Consensus 6 ~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~ 84 (434)
+++++|++|++++ .|+.|+|||+.+++.+..+..+. ..+.+++| |+++|++++ +++|++||+.+.....
T Consensus 138 ~~~~d~~~l~~g~-----~dg~i~iwd~~~~~~~~~~~~h~---~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~ 207 (435)
T 1p22_A 138 CLQYDDQKIVSGL-----RDNTIKIWDKNTLECKRILTGHT---GSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLN 207 (435)
T ss_dssp EEECCSSEEEEEE-----SSSCEEEEESSSCCEEEEECCCS---SCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEE
T ss_pred EEEECCCEEEEEe-----CCCeEEEEeCCCCeEEEEEcCCC---CcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEE
Confidence 3455999999999 89999999999999988887653 56668888 888888884 6899999998866544
Q ss_pred eeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCce---eeeeecccceeEEEECCCCCeEEEEEE
Q 013871 85 LYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPL---ARRSFFRCSTVQLNWNRGSTGLLAVAQ 161 (434)
Q Consensus 85 ~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i---~~~~~~~~~~~~~~ws~~G~~l~~~~~ 161 (434)
....+...|.++.|+++ .++. ++.++.|++|++.. ...+ .....+...+..+.| +|+.++...
T Consensus 208 ~~~~h~~~v~~l~~~~~---~l~s-----~s~dg~i~vwd~~~---~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~- 273 (435)
T 1p22_A 208 TLIHHCEAVLHLRFNNG---MMVT-----CSKDRSIAVWDMAS---PTDITLRRVLVGHRAAVNVVDF--DDKYIVSAS- 273 (435)
T ss_dssp EECCCCSCEEEEECCTT---EEEE-----EETTSCEEEEECSS---SSCCEEEEEECCCSSCEEEEEE--ETTEEEEEE-
T ss_pred EEcCCCCcEEEEEEcCC---EEEE-----eeCCCcEEEEeCCC---CCCceeeeEecCCCCcEEEEEe--CCCEEEEEe-
Confidence 44556678999998753 3433 24567999999987 4433 455567777888888 677655432
Q ss_pred ecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-cceeEEe--CCcC
Q 013871 162 SDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL--GSGP 238 (434)
Q Consensus 162 ~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~-~~~~~~~--~~~~ 238 (434)
.|.. +..+++.........-.+.+.|.+++|+ ++.++ +|..++.|++||++ +..+..+ |...
T Consensus 274 --~dg~---------i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~--~g~~dg~i~iwd~~~~~~~~~~~~h~~~ 338 (435)
T 1p22_A 274 --GDRT---------IKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVV--SGSSDNTIRLWDIECGACLRVLEGHEEL 338 (435)
T ss_dssp --TTSE---------EEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEE--EEETTSCEEEEETTTCCEEEEECCCSSC
T ss_pred --CCCe---------EEEEECCcCcEEEEEcCCCCcEEEEEeC--CCEEE--EEeCCCeEEEEECCCCCEEEEEeCCcCc
Confidence 3333 3333333321111112346789999994 56666 57889999999997 4455555 6788
Q ss_pred eeEEEECCCCCeEEEEecCCCCCeEEEEEccCCE---------EEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCC
Q 013871 239 YNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK---------QLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDN 307 (434)
Q Consensus 239 ~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~---------~i~~~~~~--~~~~~~wspdg~~l~tas~~prl~~D~ 307 (434)
+.++.| +|++|++++ .+|.|++||+.+++ .+..+.+| .+..++| ||.+|++++. |+
T Consensus 339 v~~~~~--~~~~l~sg~---~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~------Dg 405 (435)
T 1p22_A 339 VRCIRF--DNKRIVSGA---YDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSH------DD 405 (435)
T ss_dssp EEEEEC--CSSEEEEEE---TTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCS------SS
T ss_pred EEEEEe--cCCEEEEEe---CCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeC------CC
Confidence 999999 789999998 56799999987655 77777766 4556888 8899999999 99
Q ss_pred cEEEEeecCc
Q 013871 308 GIKIFHHNGS 317 (434)
Q Consensus 308 ~i~iw~~~g~ 317 (434)
.|+||++...
T Consensus 406 ~i~iwd~~~~ 415 (435)
T 1p22_A 406 TILIWDFLND 415 (435)
T ss_dssp EEEEEC----
T ss_pred EEEEEECCCC
Confidence 9999999664
No 98
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.92 E-value=9.5e-23 Score=194.90 Aligned_cols=262 Identities=11% Similarity=0.123 Sum_probs=185.3
Q ss_pred CCCCCCeeeecCCCcEEE-Eec----CCeEEEEeCCCCCCceeee-eecCCeeEEEEeCCC--CCeEEEEecCCCCCCce
Q 013871 48 TKTTWPSIRFSSDEAVAC-RMA----TNEIQFFDTTDFPKGILYR-LRVPGVAAFEVSKAP--GSHVAVFVPESKGSPAS 119 (434)
Q Consensus 48 ~~~~~~~~~~S~d~~~la-~~~----~~~i~v~~~~~~~~~~~~~-~~~~~v~~~~~sp~~--~~~ia~~~~~~~~~~~~ 119 (434)
|...+.+++|+||+..++ ++. ++.|++|++.......... .+...|.+++|+|+. +..+++ .+.++.
T Consensus 17 h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~-----~~~dg~ 91 (357)
T 3i2n_A 17 FNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLAT-----GDFGGN 91 (357)
T ss_dssp CSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEE-----EETTSC
T ss_pred CCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEE-----ecCCCe
Confidence 346778999999996554 442 6799999998755322222 355689999999984 355554 245678
Q ss_pred EEEEEcCCCCCCC-ceeeeeecccceeEEE------ECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeec
Q 013871 120 VQIYACGKDLQSQ-PLARRSFFRCSTVQLN------WNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL 192 (434)
Q Consensus 120 v~i~~~~~~~~~~-~i~~~~~~~~~~~~~~------ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l 192 (434)
|++|++.. .. .+.....+...+..+. |+++|+.|+... .|... ..+++.........+
T Consensus 92 i~iwd~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~---~d~~i---------~vwd~~~~~~~~~~~ 156 (357)
T 3i2n_A 92 LHIWNLEA---PEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGS---RDGTV---------KVWDPRQKDDPVANM 156 (357)
T ss_dssp EEEECTTS---CSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEE---TTSCE---------EEECTTSCSSCSEEE
T ss_pred EEEEeCCC---CCccEEEEEecccceEEEeeccccccCCCccEEEEEe---CCCeE---------EEEeCCCCCCcceec
Confidence 99999987 44 7777778888888885 578898765432 33333 333333221111111
Q ss_pred C-----CCCCeEEEE----ECcCCCEEEEEEccCCCeEEEEecccceeEE--eCCcCeeEEEECC---CCCeEEEEecCC
Q 013871 193 R-----KEGPVHDVQ----WSYSGSEFAVVYGFMPASATIFNKKCRPILE--LGSGPYNTVRWNP---KGKFLCLAGFGN 258 (434)
Q Consensus 193 ~-----~~~~i~~v~----wspdg~~~av~~g~~~~~v~l~d~~~~~~~~--~~~~~~~~i~~SP---~g~~l~~~~~~~ 258 (434)
. ....+.+++ |+|+++.|+ ++..++.|.+||++...... .+...++++.|+| ++++|++++
T Consensus 157 ~~~~~~~~~~v~~~~~~~~~~~~~~~l~--~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~--- 231 (357)
T 3i2n_A 157 EPVQGENKRDCWTVAFGNAYNQEERVVC--AGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATS--- 231 (357)
T ss_dssp CCCTTSCCCCEEEEEEECCCC-CCCEEE--EEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEE---
T ss_pred cccCCCCCCceEEEEEEeccCCCCCEEE--EEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEEC---
Confidence 1 134788888 789999888 47778999999997654432 2688999999999 999999998
Q ss_pred CCCeEEEEEccCCEEEEEe-----eCC--CceEEEECCCCC-EEEEEEcCCceeeCCcEEEEeecC--------------
Q 013871 259 LPGDMAFWDYVDGKQLGTT-----RAE--CSVTSEWSPDGR-YFMTATTAPRLQIDNGIKIFHHNG-------------- 316 (434)
Q Consensus 259 ~~g~i~iwd~~~~~~i~~~-----~~~--~~~~~~wspdg~-~l~tas~~prl~~D~~i~iw~~~g-------------- 316 (434)
.+|.|++||+.+++.+..+ .+| .+..++|+|+|+ +|++++. |+.|+||++..
T Consensus 232 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~g~~~ 305 (357)
T 3i2n_A 232 LEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGG------AGGLHLWKYEYPIQRSKKDSEGIEM 305 (357)
T ss_dssp STTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEET------TSEEEEEEEECCSCC--CCTTSCCC
T ss_pred CCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeC------CCcEEEeecCCCcccccccCCCCcc
Confidence 5679999999876533222 244 566799999999 7899998 99999999963
Q ss_pred ------ceeee--eecccceeeEEEcCCCCCC
Q 013871 317 ------SLFFK--KMFDKLFQAEWKPVSPDKF 340 (434)
Q Consensus 317 ------~~~~~--~~~~~~~~~~w~p~~~~~~ 340 (434)
+++.. .+...+..+.|.|++..++
T Consensus 306 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 337 (357)
T 3i2n_A 306 GVAGSVSLLQNVTLSTQPISSLDWSPDKRGLC 337 (357)
T ss_dssp CCCCEEEEEEEEECCSSCEEEEEECSSSTTEE
T ss_pred ccccccceeeccccCCCCeeEEEEcCCCCeEE
Confidence 12222 2445799999999998887
No 99
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.92 E-value=2.4e-23 Score=218.95 Aligned_cols=312 Identities=12% Similarity=0.041 Sum_probs=198.0
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC----------Ce
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT----------NE 71 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~----------~~ 71 (434)
+.+++|||||++|++ + .|++|++||+.+|+....+..+......+..++|||||++|+++.+ +.
T Consensus 19 ~~~~~~spdg~~~~~-~-----~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~ 92 (723)
T 1xfd_A 19 DPEAKWISDTEFIYR-E-----QKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGY 92 (723)
T ss_dssp CCCCCBSSSSCBCCC-C-----SSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSE
T ss_pred ccccEEcCCCcEEEE-e-----CCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceee
Confidence 467899999998865 4 5789999999999877666543211113668999999999998854 68
Q ss_pred EEEEeCCCCCCceeeee---ecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccc-----
Q 013871 72 IQFFDTTDFPKGILYRL---RVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCS----- 143 (434)
Q Consensus 72 i~v~~~~~~~~~~~~~~---~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~----- 143 (434)
|.+||+.+... ..... +...+..++|||+ +..|++... +.|.+|++.. +............
T Consensus 93 i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPd-G~~la~~~~------~~i~~~~~~~---g~~~~~~~~~~~~~~~~g 161 (723)
T 1xfd_A 93 YVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPK-GQQLIFIFE------NNIYYCAHVG---KQAIRVVSTGKEGVIYNG 161 (723)
T ss_dssp EEEEESSSCCC-EECCCTTCCSCCCSBCCBCSS-TTCEEEEET------TEEEEESSSS---SCCEEEECCCBTTTEEEE
T ss_pred EEEEECCCCce-EeccCCccccccccccEECCC-CCEEEEEEC------CeEEEEECCC---CceEEEecCCCCCceECc
Confidence 99999987543 11111 1123778999999 556655432 4789999876 4433322222221
Q ss_pred -------------eeEEEECCCCCeEEEEEEecccccCcee------------------------ecceeEEEEeeCCcc
Q 013871 144 -------------TVQLNWNRGSTGLLAVAQSDVDKTNQSY------------------------YGESKLNYLTTDGTH 186 (434)
Q Consensus 144 -------------~~~~~ws~~G~~l~~~~~~~~d~~~~~~------------------------~g~~~l~~l~~~~~~ 186 (434)
...+.|||||+.|++....+. ....| .....|+.+++.+..
T Consensus 162 ~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~ 239 (723)
T 1xfd_A 162 LSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDS--RVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPT 239 (723)
T ss_dssp ECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECT--TSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSC
T ss_pred ccceeEEEEeccCcceEEECCCCCEEEEEEECCC--ccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCc
Confidence 257999999999887653321 01110 012367777776653
Q ss_pred eeeeecCC-------CCCeEEEEECcCCCEEEEEEcc--CCCeEEEEecccceeEEe----CCcCee----EEEECCCCC
Q 013871 187 EGLVPLRK-------EGPVHDVQWSYSGSEFAVVYGF--MPASATIFNKKCRPILEL----GSGPYN----TVRWNPKGK 249 (434)
Q Consensus 187 ~~~v~l~~-------~~~i~~v~wspdg~~~av~~g~--~~~~v~l~d~~~~~~~~~----~~~~~~----~i~~SP~g~ 249 (434)
....+.. ...+.+++|||||+.+++.... .+..|.+||+.+.....+ +.+.+. .++|||||+
T Consensus 240 -~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~ 318 (723)
T 1xfd_A 240 -HDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGR 318 (723)
T ss_dssp -CCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSC
T ss_pred -eeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCC
Confidence 2122221 4568899999999977654322 234789999865433222 233333 789999999
Q ss_pred eEEEE-ecCCCCC------eEEEEE-ccCCE--EEEEee-CC-CceE-EEECCCCCEEEEEEcCCceeeC--CcEEEEee
Q 013871 250 FLCLA-GFGNLPG------DMAFWD-YVDGK--QLGTTR-AE-CSVT-SEWSPDGRYFMTATTAPRLQID--NGIKIFHH 314 (434)
Q Consensus 250 ~l~~~-~~~~~~g------~i~iwd-~~~~~--~i~~~~-~~-~~~~-~~wspdg~~l~tas~~prl~~D--~~i~iw~~ 314 (434)
.|+++ +. .+| .|++|| ..+++ ++..+. ++ .+.. ++|||||++|++.+.. + +.++||++
T Consensus 319 ~l~~~~~~--~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~-----~~~~~~~l~~~ 391 (723)
T 1xfd_A 319 KFFFIRAI--PQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTE-----DLPRRRQLYSA 391 (723)
T ss_dssp SEEEEEEE--CCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESS-----SCTTCCEEEEE
T ss_pred eEEEEEec--ccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcC-----CCCcceEEEEE
Confidence 88875 32 234 678888 44444 133333 23 3443 6999999999888762 3 78999998
Q ss_pred c--Cc-eeeee-----ecccceeeEEEcCCCCCC
Q 013871 315 N--GS-LFFKK-----MFDKLFQAEWKPVSPDKF 340 (434)
Q Consensus 315 ~--g~-~~~~~-----~~~~~~~~~w~p~~~~~~ 340 (434)
+ |. ..... +...+..+.|+|++..++
T Consensus 392 ~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~ 425 (723)
T 1xfd_A 392 NTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFL 425 (723)
T ss_dssp CSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEE
T ss_pred eCCCCCCcceecccccCCCCeEEEEECCCCCEEE
Confidence 4 32 22211 234578899999887554
No 100
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.91 E-value=8.6e-22 Score=184.66 Aligned_cols=262 Identities=11% Similarity=0.077 Sum_probs=190.8
Q ss_pred cEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCC
Q 013871 37 EAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKG 115 (434)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~ 115 (434)
+.+..+..+ ...+.+++| +|+.+|+++. ++.|++|++...........+...|.+++|+|+ +..+++ .+
T Consensus 9 ~~~~~l~~h---~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~-----~~ 78 (313)
T 3odt_A 9 QLSATLKGH---DQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSE-KELLLF-----GG 78 (313)
T ss_dssp EEEEEECCC---SSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETT-TTEEEE-----EE
T ss_pred HHHHHhhCC---CCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCC-CCEEEE-----ec
Confidence 455666554 377889999 8998888884 689999999775444444556678999999998 455554 24
Q ss_pred CCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCC
Q 013871 116 SPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKE 195 (434)
Q Consensus 116 ~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~ 195 (434)
.++.+++|++........+.....+...+..+.| ++..++.. ..|.... .++ .+. .......+.
T Consensus 79 ~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~---~~d~~i~---------~~d-~~~-~~~~~~~~~ 142 (313)
T 3odt_A 79 KDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISG---SWDKTAK---------VWK-EGS-LVYNLQAHN 142 (313)
T ss_dssp TTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEE---ETTSEEE---------EEE-TTE-EEEEEECCS
T ss_pred CCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEE---eCCCCEE---------EEc-CCc-EEEecccCC
Confidence 5678999999764434667777778888899999 46655432 1333333 222 121 111122347
Q ss_pred CCeEEEEECc-CCCEEEEEEccCCCeEEEEecccce-eEEe-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCE
Q 013871 196 GPVHDVQWSY-SGSEFAVVYGFMPASATIFNKKCRP-ILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK 272 (434)
Q Consensus 196 ~~i~~v~wsp-dg~~~av~~g~~~~~v~l~d~~~~~-~~~~-~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~ 272 (434)
.++.+++|+| +++.++ ++..++.+.+||..... .... +...+.+++|+|+|+ +++++ .+|.|++||+.+++
T Consensus 143 ~~v~~~~~~~~~~~~l~--~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~---~dg~i~i~d~~~~~ 216 (313)
T 3odt_A 143 ASVWDAKVVSFSENKFL--TASADKTIKLWQNDKVIKTFSGIHNDVVRHLAVVDDGH-FISCS---NDGLIKLVDMHTGD 216 (313)
T ss_dssp SCEEEEEEEETTTTEEE--EEETTSCEEEEETTEEEEEECSSCSSCEEEEEEEETTE-EEEEE---TTSEEEEEETTTCC
T ss_pred CceeEEEEccCCCCEEE--EEECCCCEEEEecCceEEEEeccCcccEEEEEEcCCCe-EEEcc---CCCeEEEEECCchh
Confidence 8999999999 888877 46778999999954322 2222 678899999999999 77777 56799999999999
Q ss_pred EEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceeeee--ecccceeeEEEcCCC
Q 013871 273 QLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKK--MFDKLFQAEWKPVSP 337 (434)
Q Consensus 273 ~i~~~~~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~-~g~~~~~~--~~~~~~~~~w~p~~~ 337 (434)
.+..+..| .+..++|+|+| .|++++. |+.|+|||+ +++++... +...+..+.|.|++.
T Consensus 217 ~~~~~~~~~~~i~~~~~~~~~-~l~~~~~------dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~ 279 (313)
T 3odt_A 217 VLRTYEGHESFVYCIKLLPNG-DIVSCGE------DRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD 279 (313)
T ss_dssp EEEEEECCSSCEEEEEECTTS-CEEEEET------TSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC
T ss_pred hhhhhhcCCceEEEEEEecCC-CEEEEec------CCEEEEEECCCCceeEEEeccCceEEEEEEccCCC
Confidence 99888766 56679999999 5888888 999999998 45554443 445799999999987
No 101
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.91 E-value=1e-23 Score=204.04 Aligned_cols=236 Identities=11% Similarity=0.107 Sum_probs=166.8
Q ss_pred CCCCeeeecCCCcEEEEe-cCCeEEEEeCCCC--CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcC
Q 013871 50 TTWPSIRFSSDEAVACRM-ATNEIQFFDTTDF--PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACG 126 (434)
Q Consensus 50 ~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~--~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~ 126 (434)
..+.+++|+||+++|+++ .++.|++|++... ........|...|.+++|+|++ ..++.. +.++.|++|++.
T Consensus 12 ~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~-----s~d~~v~vwd~~ 85 (377)
T 3dwl_C 12 KPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKS-NRIVTC-----SQDRNAYVYEKR 85 (377)
T ss_dssp SCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTT-CCEEEE-----ETTSSEEEC---
T ss_pred CcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCC-CEEEEE-----eCCCeEEEEEcC
Confidence 567799999999999998 5789999999764 2223344556689999999994 445432 456789999998
Q ss_pred CCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcc----eeeeecCCCCCeEEEE
Q 013871 127 KDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH----EGLVPLRKEGPVHDVQ 202 (434)
Q Consensus 127 ~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~----~~~v~l~~~~~i~~v~ 202 (434)
.......+.....+...+..+.|+|+|+.|+... .|...+ .++..... ...+.-.+.+.|.+++
T Consensus 86 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d~~i~---------iwd~~~~~~~~~~~~~~~~h~~~v~~~~ 153 (377)
T 3dwl_C 86 PDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGS---GARVIS---------VCYFEQENDWWVSKHLKRPLRSTILSLD 153 (377)
T ss_dssp ---CCCCEEECCCCSSCEEEEECCTTSSCCEEEE---SSSCEE---------ECCC-----CCCCEEECSSCCSCEEEEE
T ss_pred CCCceeeeeEecccCCceEEEEECCCCCEEEEEe---cCCeEE---------EEEECCcccceeeeEeecccCCCeEEEE
Confidence 7211125556666888899999999999876542 333333 22222221 1122222578999999
Q ss_pred ECcCCCEEEEEEccCCCeEEEEecc-------------------cceeEEe-CCcCeeEEEECCCCCeEEEEecCCCCCe
Q 013871 203 WSYSGSEFAVVYGFMPASATIFNKK-------------------CRPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGD 262 (434)
Q Consensus 203 wspdg~~~av~~g~~~~~v~l~d~~-------------------~~~~~~~-~~~~~~~i~~SP~g~~l~~~~~~~~~g~ 262 (434)
|+|+++.|+ ++..++.+++||++ ...+..+ |...+++++|+|+|++|++++ .+|.
T Consensus 154 ~~~~~~~l~--~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~---~d~~ 228 (377)
T 3dwl_C 154 WHPNNVLLA--AGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAG---HDSS 228 (377)
T ss_dssp ECTTSSEEE--EEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEE---TTTE
T ss_pred EcCCCCEEE--EEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEe---CCCc
Confidence 999999888 57778999999984 2233333 677899999999999999998 5679
Q ss_pred EEEEEccCCEE----EEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec
Q 013871 263 MAFWDYVDGKQ----LGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN 315 (434)
Q Consensus 263 i~iwd~~~~~~----i~~~~~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~ 315 (434)
|+|||+.+++. +..+..| .+..++|+|||++|++++ |+.+.+|+..
T Consensus 229 i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-------~~~~~~~~~~ 280 (377)
T 3dwl_C 229 VTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGY-------NYSPILLQGN 280 (377)
T ss_dssp EC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEES-------SSSEEEECCC
T ss_pred EEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEc-------CCcEEEEEeC
Confidence 99999998865 6666666 466799999999998876 5555588775
No 102
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.91 E-value=8.5e-22 Score=194.07 Aligned_cols=313 Identities=10% Similarity=0.061 Sum_probs=212.4
Q ss_pred ceEE---ecCCCcEEEEEecCC---------CCCCC--cEEEEEcCCC--cEEEEEeecCcCCCCCCeeeecCCCcEEEE
Q 013871 3 LLLT---CLRVGLIIQTFQKSS---------TPQEK--NVILWKTETG--EAVYQLFQKNMTKTTWPSIRFSSDEAVACR 66 (434)
Q Consensus 3 ~~l~---fSP~g~~L~t~~~~~---------~~~d~--~v~iWd~~~g--~~~~~~~~~~~~~~~~~~~~~S~d~~~la~ 66 (434)
..++ |+|++..+....... +.+++ .|.+||..++ +.+..+... ....+++|+|++.++++
T Consensus 64 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~----~~~~~~~~s~~~~~~~~ 139 (433)
T 3bws_A 64 VEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGITHRFISRFKTG----FQPKSVRFIDNTRLAIP 139 (433)
T ss_dssp EEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCSEEEEEEEECS----SCBCCCEESSSSEEEEE
T ss_pred EEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCcceEEEEEcCC----CCceEEEEeCCCeEEEE
Confidence 4566 899998887655321 12334 4444454445 455555543 22338899997777777
Q ss_pred ec-CCeEEEEeCCCCCCceee-----eeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeec
Q 013871 67 MA-TNEIQFFDTTDFPKGILY-----RLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFF 140 (434)
Q Consensus 67 ~~-~~~i~v~~~~~~~~~~~~-----~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~ 140 (434)
+. ++.|++||..+....... ..+...|.+++|+|+ +..++. ...++.|++|++.. .+.+.....+
T Consensus 140 ~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~s-----~~~d~~v~~~d~~~---~~~~~~~~~~ 210 (433)
T 3bws_A 140 LLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEH-NELWVS-----QMQANAVHVFDLKT---LAYKATVDLT 210 (433)
T ss_dssp BTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGG-TEEEEE-----EGGGTEEEEEETTT---CCEEEEEECS
T ss_pred eCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCC-CEEEEE-----ECCCCEEEEEECCC---ceEEEEEcCC
Confidence 75 468999999875432211 123346889999887 344432 23457899999987 6777777777
Q ss_pred ccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEcc----
Q 013871 141 RCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGF---- 216 (434)
Q Consensus 141 ~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~---- 216 (434)
......+.|+|+|+.+++... .|. .++.++.... .....+...+.+..++|+|+|+.+++....
T Consensus 211 ~~~~~~~~~~~~~~~l~~~~~--~~~---------~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~ 278 (433)
T 3bws_A 211 GKWSKILLYDPIRDLVYCSNW--ISE---------DISVIDRKTK-LEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQ 278 (433)
T ss_dssp SSSEEEEEEETTTTEEEEEET--TTT---------EEEEEETTTT-EEEEECCCCSEEEEEEECTTSSEEEEEEEESCTT
T ss_pred CCCeeEEEEcCCCCEEEEEec--CCC---------cEEEEECCCC-cEEEEecCCCCceEEEEcCCCCEEEEEECCCCcc
Confidence 778889999999998765421 121 3555555443 333344445678999999999988864321
Q ss_pred --CCCeEEEEecccceeE-Ee-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC-CceEEEECCCC
Q 013871 217 --MPASATIFNKKCRPIL-EL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-CSVTSEWSPDG 291 (434)
Q Consensus 217 --~~~~v~l~d~~~~~~~-~~-~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-~~~~~~wspdg 291 (434)
.++.|.+||++...+. .+ +...+..++|+|+|+++++++. .++.|.+||+.+++.+..+... .+..++|+|||
T Consensus 279 ~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~--~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg 356 (433)
T 3bws_A 279 ESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDM--CCSKIEVYDLKEKKVQKSIPVFDKPNTIALSPDG 356 (433)
T ss_dssp CSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEET--TTTEEEEEETTTTEEEEEEECSSSEEEEEECTTS
T ss_pred ccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEec--CCCEEEEEECCCCcEEEEecCCCCCCeEEEcCCC
Confidence 3679999999754433 33 3557889999999987766543 4579999999999888877654 56679999999
Q ss_pred CEEEEEEcCCce---------eeCCcEEEEee-cCceeeeee-cccceeeEEEcCCCCCCCC
Q 013871 292 RYFMTATTAPRL---------QIDNGIKIFHH-NGSLFFKKM-FDKLFQAEWKPVSPDKFGD 342 (434)
Q Consensus 292 ~~l~tas~~prl---------~~D~~i~iw~~-~g~~~~~~~-~~~~~~~~w~p~~~~~~~~ 342 (434)
++|++++..... ..|+.|++||. +++.+.... ...+..+.|.|++..++..
T Consensus 357 ~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~ 418 (433)
T 3bws_A 357 KYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGNQPTGLDVSPDNRYLVIS 418 (433)
T ss_dssp SEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECSSSEEEEEECTTSCEEEEE
T ss_pred CEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCCCCCceEEEcCCCCEEEEE
Confidence 999998863110 01468999998 455554433 3467899999998877653
No 103
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.91 E-value=3.1e-21 Score=187.42 Aligned_cols=246 Identities=10% Similarity=0.024 Sum_probs=175.1
Q ss_pred cceEEecCCCcEE-EEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-c-CCeEEEEeCC
Q 013871 2 LLLLTCLRVGLII-QTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-A-TNEIQFFDTT 78 (434)
Q Consensus 2 V~~l~fSP~g~~L-~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~-~~~i~v~~~~ 78 (434)
+.+++|||+|++| ++.+ .|+.|++||+.+++.+..+..+ ..+.+++|+||+++++.+ . ++.|++||+.
T Consensus 34 ~~~~~~s~dg~~l~~~~~-----~d~~i~v~d~~~~~~~~~~~~~----~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~ 104 (391)
T 1l0q_A 34 PMGAVISPDGTKVYVANA-----HSNDVSIIDTATNNVIATVPAG----SSPQGVAVSPDGKQVYVTNMASSTLSVIDTT 104 (391)
T ss_dssp EEEEEECTTSSEEEEEEG-----GGTEEEEEETTTTEEEEEEECS----SSEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred cceEEECCCCCEEEEECC-----CCCeEEEEECCCCeEEEEEECC----CCccceEECCCCCEEEEEECCCCEEEEEECC
Confidence 5789999999988 4554 5789999999999998887664 355689999999987654 3 4799999998
Q ss_pred CCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEE
Q 013871 79 DFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLA 158 (434)
Q Consensus 79 ~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~ 158 (434)
....... ......+..++|+|++ ..+.+. ....+.|.+|++.+ ++.+.....+ .....+.|+|+|+.|++
T Consensus 105 ~~~~~~~-~~~~~~~~~~~~s~dg-~~l~~~----~~~~~~v~~~d~~~---~~~~~~~~~~-~~~~~~~~~~dg~~l~~ 174 (391)
T 1l0q_A 105 SNTVAGT-VKTGKSPLGLALSPDG-KKLYVT----NNGDKTVSVINTVT---KAVINTVSVG-RSPKGIAVTPDGTKVYV 174 (391)
T ss_dssp TTEEEEE-EECSSSEEEEEECTTS-SEEEEE----ETTTTEEEEEETTT---TEEEEEEECC-SSEEEEEECTTSSEEEE
T ss_pred CCeEEEE-EeCCCCcceEEECCCC-CEEEEE----eCCCCEEEEEECCC---CcEEEEEecC-CCcceEEECCCCCEEEE
Confidence 7543221 1224468899999994 444322 23457999999977 5655555443 45578999999998765
Q ss_pred EEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEcc-CCCeEEEEeccc-ceeEEe-C
Q 013871 159 VAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGF-MPASATIFNKKC-RPILEL-G 235 (434)
Q Consensus 159 ~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~-~~~~v~l~d~~~-~~~~~~-~ 235 (434)
... .+ ..++.++.... .....+.....+..++|+|+|+++++.... .++.+.+||++. ..+..+ .
T Consensus 175 ~~~--~~---------~~v~~~d~~~~-~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~ 242 (391)
T 1l0q_A 175 ANF--DS---------MSISVIDTVTN-SVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPV 242 (391)
T ss_dssp EET--TT---------TEEEEEETTTT-EEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEEC
T ss_pred EeC--CC---------CEEEEEECCCC-eEEEEEecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEec
Confidence 422 11 12555555443 233333345678999999999998874321 578999999974 344444 3
Q ss_pred CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC
Q 013871 236 SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE 280 (434)
Q Consensus 236 ~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~ 280 (434)
...+.+++|+|+|++|++++. .++.|++||+.+++.+..+..+
T Consensus 243 ~~~~~~~~~s~dg~~l~~s~~--~d~~v~v~d~~~~~~~~~~~~~ 285 (391)
T 1l0q_A 243 GPDPAGIAVTPDGKKVYVALS--FXNTVSVIDTATNTITATMAVG 285 (391)
T ss_dssp CSSEEEEEECTTSSEEEEEET--TTTEEEEEETTTTEEEEEEECS
T ss_pred CCCccEEEEccCCCEEEEEcC--CCCEEEEEECCCCcEEEEEECC
Confidence 445788999999998865543 3479999999999988877654
No 104
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.91 E-value=9.7e-22 Score=184.92 Aligned_cols=241 Identities=14% Similarity=0.196 Sum_probs=180.9
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF 80 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~ 80 (434)
|++|+|||+|++|++++ .|+.|+|||+.+++++..+..+. .. ...+++++.+++++. ++.+++|+....
T Consensus 70 V~~v~~~~~~~~l~sgs-----~Dg~v~iw~~~~~~~~~~~~~h~---~~--~~~~~~~~~~l~s~~~~~~~~~~~~~~~ 139 (318)
T 4ggc_A 70 ISSVAWIKEGNYLAVGT-----SSAEVQLWDVQQQKRLRNMTSHS---AR--VGSLSWNSYILSSGSRSGHIHHHDVRVA 139 (318)
T ss_dssp EEEEEECTTSSEEEEEE-----TTSEEEEEETTTTEEEEEEECCS---SC--EEEEEEETTEEEEEETTSEEEEEETTSS
T ss_pred EEEEEECCCCCEEEEEE-----CCCcEEEeecCCceeEEEecCcc---ce--EEEeecCCCEEEEEecCCceEeeecCCC
Confidence 78999999999999999 89999999999999999887653 33 456788889999885 579999998764
Q ss_pred CCc-eeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCC-CCceeeeeecccceeEEEECCCCCeEEE
Q 013871 81 PKG-ILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQ-SQPLARRSFFRCSTVQLNWNRGSTGLLA 158 (434)
Q Consensus 81 ~~~-~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~-~~~i~~~~~~~~~~~~~~ws~~G~~l~~ 158 (434)
... .....+...+..+.++++ +..++. .+.++.|++|++.+... .........+...+..+.|++++..++.
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~-~~~l~s-----~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 213 (318)
T 4ggc_A 140 EHHVATLSGHSQEVCGLRWAPD-GRHLAS-----GGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLA 213 (318)
T ss_dssp SCEEEEEECCSSCEEEEEECTT-SSEEEE-----EETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEE
T ss_pred ceeEEEEcCccCceEEEEEcCC-CCEEEE-----EecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEE
Confidence 332 223345667888999998 455543 24567899999976321 1223344455667788999999988877
Q ss_pred EEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-cceeEEe--C
Q 013871 159 VAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL--G 235 (434)
Q Consensus 159 ~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~-~~~~~~~--~ 235 (434)
+++...+.+.+.|. .... ...........+..+.|+|+++.+++.+|..++.|++||++ ++.+..+ |
T Consensus 214 ~~~~~~~~~i~lwd---------~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH 283 (318)
T 4ggc_A 214 TGGGTSDRHIRIWN---------VCSG-ACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGH 283 (318)
T ss_dssp EEECTTTCEEEEEE---------TTTC-CEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCC
T ss_pred EEecCCCCEEEEEe---------cccc-cccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCC
Confidence 76655554444332 2222 22222334678999999999999998888899999999996 5556666 7
Q ss_pred CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC
Q 013871 236 SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG 271 (434)
Q Consensus 236 ~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~ 271 (434)
.+.|++++|||+|++|++++ .||+|+|||+.+.
T Consensus 284 ~~~V~~l~~spdg~~l~S~s---~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 284 TSRVLSLTMSPDGATVASAA---ADETLRLWRCFEL 316 (318)
T ss_dssp SSCEEEEEECTTSSCEEEEE---TTTEEEEECCSCC
T ss_pred CCCEEEEEEcCCCCEEEEEe---cCCeEEEEECCCC
Confidence 89999999999999999999 6679999998754
No 105
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.91 E-value=5.1e-23 Score=203.32 Aligned_cols=265 Identities=12% Similarity=0.091 Sum_probs=180.3
Q ss_pred EecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecC-CCcEEEEec-CCeEEEEeCCC---C
Q 013871 6 TCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSS-DEAVACRMA-TNEIQFFDTTD---F 80 (434)
Q Consensus 6 ~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~-d~~~la~~~-~~~i~v~~~~~---~ 80 (434)
.|+|+|+.+++.. +|+ .+|+.+..+... |...+.+++|+| |+++|++++ |++|+||++.. .
T Consensus 34 ~f~~~~~~~~~~~-----------~w~-~~g~~~~~~~~~--h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~ 99 (437)
T 3gre_A 34 EFGPIQEIVRSPN-----------MGN-LRGKLIATLMEN--EPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVG 99 (437)
T ss_dssp GGCCCCCCCCCCC-----------GGG-CCCCEEEEECTT--TTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTT
T ss_pred hcCCccccccccc-----------ccc-ccceEEeeeccC--CCCceEEEEECCCCCCEEEEecCCceEEEeECcccccC
Confidence 4788888776533 377 568888888332 347788999999 999999985 67999999865 2
Q ss_pred CCc-eeee-eecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeec------------ccceeE
Q 013871 81 PKG-ILYR-LRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFF------------RCSTVQ 146 (434)
Q Consensus 81 ~~~-~~~~-~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~------------~~~~~~ 146 (434)
... .... .+...|.+++|+|+ +..+++ .+.++.|++|++.....++.+.....+ ......
T Consensus 100 ~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s-----~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 173 (437)
T 3gre_A 100 EVYSSSLTYDCSSTVTQITMIPN-FDAFAV-----SSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVR 173 (437)
T ss_dssp CCCSCSEEEECSSCEEEEEECTT-SSEEEE-----EETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEE
T ss_pred cccceeeeccCCCCEEEEEEeCC-CCEEEE-----EeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceE
Confidence 111 1122 35668999999997 455543 245679999999521003333222211 122233
Q ss_pred EE--ECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecC---CCCCeEEEEECcCCCEEEEEEccCCCeE
Q 013871 147 LN--WNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR---KEGPVHDVQWSYSGSEFAVVYGFMPASA 221 (434)
Q Consensus 147 ~~--ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~---~~~~i~~v~wspdg~~~av~~g~~~~~v 221 (434)
+. |++++..|+... .|.. +..+++... .....+. +.+.|.+++|+|+++.|+ +|..++.|
T Consensus 174 ~~~~~~~~~~~l~~~~---~d~~---------i~iwd~~~~-~~~~~~~~~~h~~~v~~~~~s~~~~~l~--s~~~dg~i 238 (437)
T 3gre_A 174 MRAFVNEEKSLLVALT---NLSR---------VIIFDIRTL-ERLQIIENSPRHGAVSSICIDEECCVLI--LGTTRGII 238 (437)
T ss_dssp EEEEECSSCEEEEEEE---TTSE---------EEEEETTTC-CEEEEEECCGGGCCEEEEEECTTSCEEE--EEETTSCE
T ss_pred EEEEEcCCCCEEEEEe---CCCe---------EEEEeCCCC-eeeEEEccCCCCCceEEEEECCCCCEEE--EEcCCCeE
Confidence 33 566776654432 2322 334444332 2222222 468999999999999988 57889999
Q ss_pred EEEeccc-ceeEEe---CCcCeeEEEEC----CCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC-------------
Q 013871 222 TIFNKKC-RPILEL---GSGPYNTVRWN----PKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE------------- 280 (434)
Q Consensus 222 ~l~d~~~-~~~~~~---~~~~~~~i~~S----P~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~------------- 280 (434)
++||++. ..+..+ +..++++++|+ |+|++|++++ .+|.|++||+.+++++..+.++
T Consensus 239 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (437)
T 3gre_A 239 DIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGS---SKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIE 315 (437)
T ss_dssp EEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEES---TTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBC
T ss_pred EEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEc---CCCcEEEEEcCCCcEEEEEEcCCCCCccceecccc
Confidence 9999974 444443 56789999554 5688999988 5679999999999888877643
Q ss_pred ---------------CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec
Q 013871 281 ---------------CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN 315 (434)
Q Consensus 281 ---------------~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~ 315 (434)
.+..++|+ ++++|++++. |+.|++||+.
T Consensus 316 ~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~------d~~i~~wd~~ 358 (437)
T 3gre_A 316 KGLEELNFCGIRSLNALSTISVS-NDKILLTDEA------TSSIVMFSLN 358 (437)
T ss_dssp SSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGG------GTEEEEEETT
T ss_pred cccccceecccccCCceEEEEEC-CceEEEecCC------CCeEEEEECC
Confidence 24558899 8899999999 9999999984
No 106
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.91 E-value=3.7e-22 Score=197.34 Aligned_cols=241 Identities=13% Similarity=0.174 Sum_probs=175.6
Q ss_pred cceEEecCC-CcEEEEEecCCCCCCCcEEEEEcCC----------CcEEEEEeecCcCCCCCCeeeecCCCc-EEEEe-c
Q 013871 2 LLLLTCLRV-GLIIQTFQKSSTPQEKNVILWKTET----------GEAVYQLFQKNMTKTTWPSIRFSSDEA-VACRM-A 68 (434)
Q Consensus 2 V~~l~fSP~-g~~L~t~~~~~~~~d~~v~iWd~~~----------g~~~~~~~~~~~~~~~~~~~~~S~d~~-~la~~-~ 68 (434)
|++|+|+|+ +.+|++++ .|+.|+|||+.+ ++.+..+..+. ..+.+++|+|++. +|+++ .
T Consensus 131 v~~l~~~p~~~~~lat~~-----~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~---~~v~~l~~~~~~~~~l~s~~~ 202 (430)
T 2xyi_A 131 VNRARYMPQNACVIATKT-----PSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQ---KEGYGLSWNPNLNGYLLSASD 202 (430)
T ss_dssp CSEEEEETTEEEEEEEEC-----SSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCS---SCCCCEEECTTSTTEEEEECT
T ss_pred EEEEEECCCCCcEEEEEC-----CCCcEEEEECCCcccccCccccCCCcEEecCCC---CCeEEEEeCCCCCCeEEEEeC
Confidence 789999998 78999988 789999999986 55666666543 5666999999998 88887 4
Q ss_pred CCeEEEEeCCCCCCc-------eeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecc
Q 013871 69 TNEIQFFDTTDFPKG-------ILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFR 141 (434)
Q Consensus 69 ~~~i~v~~~~~~~~~-------~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~ 141 (434)
++.|++|++...... .....+...|.+++|+|+++..+++. +..+.|++|++........+.....+.
T Consensus 203 dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~-----~~dg~i~i~d~~~~~~~~~~~~~~~~~ 277 (430)
T 2xyi_A 203 DHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSV-----ADDQKLMIWDTRNNNTSKPSHTVDAHT 277 (430)
T ss_dssp TSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEE-----ETTSEEEEEETTCSCSSSCSEEEECCS
T ss_pred CCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEE-----eCCCeEEEEECCCCCCCcceeEeecCC
Confidence 689999999763321 12223455799999999656666542 456799999998732125666667788
Q ss_pred cceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeec-CCCCCeEEEEECcCCCEEEEEEccCCCe
Q 013871 142 CSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL-RKEGPVHDVQWSYSGSEFAVVYGFMPAS 220 (434)
Q Consensus 142 ~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l-~~~~~i~~v~wspdg~~~av~~g~~~~~ 220 (434)
..+..+.|+|+|..+++.++. |.. +.++++.........+ .+.+.|.+++|+|+++.+++ ++..++.
T Consensus 278 ~~v~~i~~~p~~~~~l~tg~~--dg~---------v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~-s~~~d~~ 345 (430)
T 2xyi_A 278 AEVNCLSFNPYSEFILATGSA--DKT---------VALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILA-SSGTDRR 345 (430)
T ss_dssp SCEEEEEECSSCTTEEEEEET--TSE---------EEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEE-EEETTSC
T ss_pred CCeEEEEeCCCCCCEEEEEeC--CCe---------EEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEE-EEeCCCc
Confidence 889999999999976655432 222 3333333321222222 25789999999999976444 4677899
Q ss_pred EEEEeccc---------------ceeEEe--CCcCeeEEEECCCCC-eEEEEecCCCCCeEEEEEccC
Q 013871 221 ATIFNKKC---------------RPILEL--GSGPYNTVRWNPKGK-FLCLAGFGNLPGDMAFWDYVD 270 (434)
Q Consensus 221 v~l~d~~~---------------~~~~~~--~~~~~~~i~~SP~g~-~l~~~~~~~~~g~i~iwd~~~ 270 (434)
|.+||+.. ..+..+ |...+++++|+|+++ +|++++ .+|.|.||++.+
T Consensus 346 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s---~dg~i~iw~~~~ 410 (430)
T 2xyi_A 346 LHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVS---EDNIMQVWQMAE 410 (430)
T ss_dssp CEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEE---TTSEEEEEEECH
T ss_pred EEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEE---CCCCEEEeEccc
Confidence 99999965 444444 577899999999999 777777 557999999874
No 107
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.91 E-value=9.4e-24 Score=206.38 Aligned_cols=260 Identities=12% Similarity=0.042 Sum_probs=160.2
Q ss_pred eEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEe--ecCcCCCCCCeeeecC--------CCcEEEEec-CCeE
Q 013871 4 LLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLF--QKNMTKTTWPSIRFSS--------DEAVACRMA-TNEI 72 (434)
Q Consensus 4 ~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~--~~~~~~~~~~~~~~S~--------d~~~la~~~-~~~i 72 (434)
...++|++++|++++ .|++|+|||+.+++...... ....|...|.+++|+| |+++||+++ |++|
T Consensus 94 ~~~~~~~~~~las~~-----~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv 168 (393)
T 4gq1_A 94 VNSSPVYSLFLACVC-----QDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTL 168 (393)
T ss_dssp ---CCEEEEEEEEEE-----TTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEE
T ss_pred eeecCCCCCEEEEEe-----CCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeE
Confidence 345678888999999 89999999999987654322 2233557788999998 899999985 6799
Q ss_pred EEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCC
Q 013871 73 QFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRG 152 (434)
Q Consensus 73 ~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~ 152 (434)
+|||+...........+...+.+++|+|++..+++. .+.++.|++|++.. ++.......+.....
T Consensus 169 ~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~-----~~~d~~v~~wd~~t---~~~~~~~~~~~~~~~------- 233 (393)
T 4gq1_A 169 IIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIV-----GERNGNIRIFDWTL---NLSAEENSQTELVKN------- 233 (393)
T ss_dssp EEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEE-----EETTSEEEEEETTC---CC----------CSC-------
T ss_pred EEEECCCCceeeeecCCCCCcEEEEECCCCCceEEe-----cCCCCEEEEEECCC---CcccccccccCCccc-------
Confidence 999987654333344456679999999985455554 35568999999976 333222111110000
Q ss_pred CCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEEC-cCCCEEEEEEccCCCeEEEEeccccee
Q 013871 153 STGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWS-YSGSEFAVVYGFMPASATIFNKKCRPI 231 (434)
Q Consensus 153 G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~ws-pdg~~~av~~g~~~~~v~l~d~~~~~~ 231 (434)
.. ++... ..... .. .....+...+..+.|+ |||+.++ ++..++.+.+||+.....
T Consensus 234 -~~-~~s~~--~~~~~---------~~---------~~~~~~~~~v~~v~~~~~dg~~l~--s~s~d~~i~vwd~~~~~~ 289 (393)
T 4gq1_A 234 -PW-LLTLN--TLPLV---------NT---------CHSSGIASSLANVRWIGSDGSGIL--AMCKSGAWLRWNLFANND 289 (393)
T ss_dssp -CC-SEEEE--SGGGC------------------------CCSSSCSEEEEETTTTCEEE--EECTTSEEEEEEC-----
T ss_pred -ce-EEecc--cccce---------ee---------eecccccccceeeeeecCCCCEEE--EEeCCCCEEEEECccCCC
Confidence 00 00000 00000 00 0001125678889886 7999888 578899999999853321
Q ss_pred -EEe--CCc-------------------CeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEE
Q 013871 232 -LEL--GSG-------------------PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEW 287 (434)
Q Consensus 232 -~~~--~~~-------------------~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~w 287 (434)
..+ +.. .+..+.+.+.+++++++|. .+|.|+|||+.+++.+.....+ .+..++|
T Consensus 290 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs--~Dg~V~lwd~~~~~~~~~~~~~~~~V~svaf 367 (393)
T 4gq1_A 290 YNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHS--QHGLIQLINTYEKDSNSIPIQLGMPIVDFCW 367 (393)
T ss_dssp --------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEET--TTTEEEEEETTCTTCCEEEEECSSCEEEEEE
T ss_pred CceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEEC--CCCEEEEEECCCCcEEEEecCCCCcEEEEEE
Confidence 111 111 1222333334444444332 5689999999988655544433 5667999
Q ss_pred CCCCCEEEEEEcCCceeeCCcEEEEeecC
Q 013871 288 SPDGRYFMTATTAPRLQIDNGIKIFHHNG 316 (434)
Q Consensus 288 spdg~~l~tas~~prl~~D~~i~iw~~~g 316 (434)
||||++|++++ ++++.||++.|
T Consensus 368 spdG~~LA~as-------~~Gv~lvrL~g 389 (393)
T 4gq1_A 368 HQDGSHLAIAT-------EGSVLLTRLMG 389 (393)
T ss_dssp CTTSSEEEEEE-------SSEEEEEEEGG
T ss_pred cCCCCEEEEEe-------CCCeEEEEEeC
Confidence 99999999987 67888888765
No 108
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.91 E-value=8e-21 Score=180.21 Aligned_cols=284 Identities=11% Similarity=0.094 Sum_probs=185.1
Q ss_pred EEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec--CCeEEEEeCCCCCC
Q 013871 5 LTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA--TNEIQFFDTTDFPK 82 (434)
Q Consensus 5 l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~--~~~i~v~~~~~~~~ 82 (434)
..|+++++++..... .++.|.+||+.+++.+..+.... ... .++|+||+++++... ++.|.+||......
T Consensus 3 ~~~~~~~~~~~v~~~----~~~~v~~~d~~~~~~~~~~~~~~---~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~ 74 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQ----HLRRISFFSTDTLEILNQITLGY---DFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPP 74 (331)
T ss_dssp ----CCCCEEEEEEG----GGTEEEEEETTTCCEEEEEECCC---CEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSC
T ss_pred eeEcCCCCEEEEEec----CCCeEEEEeCcccceeeeEEccC---Ccc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCce
Confidence 467888777554431 57899999999999887776432 334 899999999666553 57999999987553
Q ss_pred -ceeeeeecCCeeE-EEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEE
Q 013871 83 -GILYRLRVPGVAA-FEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVA 160 (434)
Q Consensus 83 -~~~~~~~~~~v~~-~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~ 160 (434)
...... ...... ++|+|+ +..+++ ....+....|.+|++.. ++.+..... ......+.|+|+|++|++..
T Consensus 75 ~~~~~~~-~~~~~~~~~~s~d-g~~l~~--~~~~~~~~~i~v~d~~~---~~~~~~~~~-~~~~~~~~~spdg~~l~~~~ 146 (331)
T 3u4y_A 75 KVVAIQE-GQSSMADVDITPD-DQFAVT--VTGLNHPFNMQSYSFLK---NKFISTIPI-PYDAVGIAISPNGNGLILID 146 (331)
T ss_dssp EEEEEEE-CSSCCCCEEECTT-SSEEEE--CCCSSSSCEEEEEETTT---TEEEEEEEC-CTTEEEEEECTTSSCEEEEE
T ss_pred eEEeccc-CCCCccceEECCC-CCEEEE--ecCCCCcccEEEEECCC---CCeEEEEEC-CCCccceEECCCCCEEEEEe
Confidence 222222 234455 899998 444442 22222334899999977 555554443 33457899999999876542
Q ss_pred EecccccCceeecceeEEEEeeCCcce-e-eeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-ce---eEEe
Q 013871 161 QSDVDKTNQSYYGESKLNYLTTDGTHE-G-LVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RP---ILEL 234 (434)
Q Consensus 161 ~~~~d~~~~~~~g~~~l~~l~~~~~~~-~-~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~-~~---~~~~ 234 (434)
.. +.. ...+|.++..+... . ...+........++|+|||+++++. +..++.+.+||++. .. +..+
T Consensus 147 ~~--~~~------~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~-~~~~~~v~v~d~~~~~~~~~~~~~ 217 (331)
T 3u4y_A 147 RS--SAN------TVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVA-NLIGNSIGILETQNPENITLLNAV 217 (331)
T ss_dssp ET--TTT------EEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEE-ETTTTEEEEEECSSTTSCEEEEEE
T ss_pred cC--CCc------eEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEE-eCCCCeEEEEECCCCcccceeeec
Confidence 21 111 01233333222110 0 1112234567899999999988764 55678999999964 33 4444
Q ss_pred -CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEE--EEEeeCC---------CceEEEECCCCCEEEEEEcCCc
Q 013871 235 -GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQ--LGTTRAE---------CSVTSEWSPDGRYFMTATTAPR 302 (434)
Q Consensus 235 -~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~--i~~~~~~---------~~~~~~wspdg~~l~tas~~pr 302 (434)
.......++|+|||++|+++..+ ++.|.+||..+++. +..+... ....++|+|||++|++++..
T Consensus 218 ~~~~~~~~~~~spdg~~l~v~~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~-- 293 (331)
T 3u4y_A 218 GTNNLPGTIVVSRDGSTVYVLTES--TVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANI-- 293 (331)
T ss_dssp ECSSCCCCEEECTTSSEEEEECSS--EEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETT--
T ss_pred cCCCCCceEEECCCCCEEEEEEcC--CCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCC--
Confidence 34566889999999988877643 36899999999876 4443322 12237999999999888773
Q ss_pred eeeCCcEEEEeecCceee
Q 013871 303 LQIDNGIKIFHHNGSLFF 320 (434)
Q Consensus 303 l~~D~~i~iw~~~g~~~~ 320 (434)
++.|.||++.+..+.
T Consensus 294 ---~~~v~v~d~~~~~~~ 308 (331)
T 3u4y_A 294 ---SRELKVFTISGKVVG 308 (331)
T ss_dssp ---TTEEEEEETTSCEEE
T ss_pred ---CCcEEEEEecCCccc
Confidence 679999999887543
No 109
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.91 E-value=7.7e-23 Score=202.48 Aligned_cols=268 Identities=9% Similarity=0.064 Sum_probs=183.3
Q ss_pred CCCCeeeecC-CCcEEEEe-cCCeEEEEeCCCCCCceeee--eecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEc
Q 013871 50 TTWPSIRFSS-DEAVACRM-ATNEIQFFDTTDFPKGILYR--LRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYAC 125 (434)
Q Consensus 50 ~~~~~~~~S~-d~~~la~~-~~~~i~v~~~~~~~~~~~~~--~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~ 125 (434)
..+.+++|+| ++++||++ .|++|+|||+.......... .|...|.+++|+|.++..++. .+.++.|++|++
T Consensus 120 ~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s-----~s~D~~v~iwd~ 194 (435)
T 4e54_B 120 RRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYA-----SSMEGTTRLQDF 194 (435)
T ss_dssp SCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEE-----ECSSSCEEEEET
T ss_pred CCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEE-----EeCCCEEEEeec
Confidence 5677999999 56788888 47899999987654333332 356679999999965566653 356789999999
Q ss_pred CCCCCCCceeee--eecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEE
Q 013871 126 GKDLQSQPLARR--SFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQW 203 (434)
Q Consensus 126 ~~~~~~~~i~~~--~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~w 203 (434)
.. ....... .......+.+.|+++|..|+.. ..|.. ++++++.+.. ......+.+.|.+++|
T Consensus 195 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g---~~dg~---------i~~wd~~~~~-~~~~~~h~~~v~~v~~ 258 (435)
T 4e54_B 195 KG---NILRVFASSDTINIWFCSLDVSASSRMVVTG---DNVGN---------VILLNMDGKE-LWNLRMHKKKVTHVAL 258 (435)
T ss_dssp TS---CEEEEEECCSSCSCCCCCEEEETTTTEEEEE---CSSSB---------EEEEESSSCB-CCCSBCCSSCEEEEEE
T ss_pred cC---CceeEEeccCCCCccEEEEEECCCCCEEEEE---eCCCc---------EeeeccCcce-eEEEecccceEEeeee
Confidence 65 2221111 1223345789999999986543 22322 3344444431 1111235789999999
Q ss_pred CcCCCEEEEEEccCCCeEEEEecccce-eE-----EeCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEe
Q 013871 204 SYSGSEFAVVYGFMPASATIFNKKCRP-IL-----ELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTT 277 (434)
Q Consensus 204 spdg~~~av~~g~~~~~v~l~d~~~~~-~~-----~~~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~ 277 (434)
+|++..+++ ++..|+.|++||++... .. ..|...|++++|+|+|++|++++ .+|.|+|||+.+++....+
T Consensus 259 ~p~~~~~~~-s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~---~D~~i~iwd~~~~~~~~~~ 334 (435)
T 4e54_B 259 NPCCDWFLA-TASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTD---QKSEIRVYSASQWDCPLGL 334 (435)
T ss_dssp CTTCSSEEE-EEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEE---SSSCEEEEESSSSSSEEEE
T ss_pred cCCCceEEE-EecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEc---CCCEEEEEECCCCccceEE
Confidence 999986554 57789999999986322 11 12678999999999999999999 5679999999988766555
Q ss_pred eCC--------CceEEEECCCCCEEEEEEcCC-cee-----eCCcEEEEee-cCceeeee---ecccceee-EEEcCCCC
Q 013871 278 RAE--------CSVTSEWSPDGRYFMTATTAP-RLQ-----IDNGIKIFHH-NGSLFFKK---MFDKLFQA-EWKPVSPD 338 (434)
Q Consensus 278 ~~~--------~~~~~~wspdg~~l~tas~~p-rl~-----~D~~i~iw~~-~g~~~~~~---~~~~~~~~-~w~p~~~~ 338 (434)
..+ ....+.|+|++.+++++.... ... -++.|+|||. +|+++... +...+..+ .|+|++..
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~ 414 (435)
T 4e54_B 335 IPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDT 414 (435)
T ss_dssp CCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSC
T ss_pred ecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCE
Confidence 433 233478999999988876421 111 1467999998 46665543 33456666 69999877
Q ss_pred CCCC
Q 013871 339 KFGD 342 (434)
Q Consensus 339 ~~~~ 342 (434)
|...
T Consensus 415 lasg 418 (435)
T 4e54_B 415 LASA 418 (435)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7654
No 110
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.90 E-value=8.8e-23 Score=195.64 Aligned_cols=233 Identities=8% Similarity=0.097 Sum_probs=167.3
Q ss_pred cceEEecCC----CcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecC-CCcEEEEec-CCeEEEE
Q 013871 2 LLLLTCLRV----GLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSS-DEAVACRMA-TNEIQFF 75 (434)
Q Consensus 2 V~~l~fSP~----g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~-d~~~la~~~-~~~i~v~ 75 (434)
|.+++|||+ |++|++++ .|+.|+|||+.+++.+..+..+. ..+.+++|+| ++.+|+++. ++.|++|
T Consensus 72 v~~~~~~~~~~~~~~~l~~~~-----~dg~i~v~d~~~~~~~~~~~~~~---~~i~~~~~~~~~~~~l~s~~~dg~i~iw 143 (366)
T 3k26_A 72 FYTCAWTYDSNTSHPLLAVAG-----SRGIIRIINPITMQCIKHYVGHG---NAINELKFHPRDPNLLLSVSKDHALRLW 143 (366)
T ss_dssp EEEEEEEECTTTCCEEEEEEE-----TTCEEEEECTTTCCEEEEEESCC---SCEEEEEECSSCTTEEEEEETTSCEEEE
T ss_pred EEEEEeccCCCCCCCEEEEec-----CCCEEEEEEchhceEeeeecCCC---CcEEEEEECCCCCCEEEEEeCCCeEEEE
Confidence 689999999 77999999 89999999999999988887543 6777999999 899999885 6799999
Q ss_pred eCCCCCCceee---eeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceee----------------
Q 013871 76 DTTDFPKGILY---RLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLAR---------------- 136 (434)
Q Consensus 76 ~~~~~~~~~~~---~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~---------------- 136 (434)
|+......... ..+...|.++.|+|+ +..+++. +.++.|++|++.. .+.+..
T Consensus 144 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~-----~~dg~i~i~d~~~---~~~~~~~~~~~~~~~~~~~~~~ 214 (366)
T 3k26_A 144 NIQTDTLVAIFGGVEGHRDEVLSADYDLL-GEKIMSC-----GMDHSLKLWRINS---KRMMNAIKESYDYNPNKTNRPF 214 (366)
T ss_dssp ETTTTEEEEEECSTTSCSSCEEEEEECTT-SSEEEEE-----ETTSCEEEEESCS---HHHHHHHHHHHTCCGGGCSSCC
T ss_pred EeecCeEEEEecccccccCceeEEEECCC-CCEEEEe-----cCCCCEEEEECCC---CccccccceeEEecCCCCcccc
Confidence 99875432222 235567999999998 4455432 4467899999976 322221
Q ss_pred ------------eeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcce-------------eeee
Q 013871 137 ------------RSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHE-------------GLVP 191 (434)
Q Consensus 137 ------------~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~-------------~~v~ 191 (434)
...+...+..+.|+ |+.++.. ..|...+ +|.+ ..... ....
T Consensus 215 ~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~---~~d~~i~-------~wd~--~~~~~~~~~~~~~~~~~~~~~~ 280 (366)
T 3k26_A 215 ISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSK---SCENAIV-------CWKP--GKMEDDIDKIKPSESNVTILGR 280 (366)
T ss_dssp CCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEE---CSSSEEE-------EEEE--SSTTCCGGGCCTTCCCEEEEEE
T ss_pred cceeeccCccccccCCcceEEEEEEc--CCEEEEE---ecCCEEE-------EEeC--CCccccccccccCCcchheecc
Confidence 12266778889998 5654432 1233322 2322 22111 0111
Q ss_pred -cCCCCCeEEEEECcC--CCEEEEEEccCCCeEEEEecccc-----eeEEe--C--CcCeeEEEECCCCCeEEEEecCCC
Q 013871 192 -LRKEGPVHDVQWSYS--GSEFAVVYGFMPASATIFNKKCR-----PILEL--G--SGPYNTVRWNPKGKFLCLAGFGNL 259 (434)
Q Consensus 192 -l~~~~~i~~v~wspd--g~~~av~~g~~~~~v~l~d~~~~-----~~~~~--~--~~~~~~i~~SP~g~~l~~~~~~~~ 259 (434)
..+...|.+++|+|+ ++.|+ +|..++.|.+||++.. ....+ + ...+++++|+|+|++|++++ .
T Consensus 281 ~~~~~~~v~~~~~s~~~~~~~l~--~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~---~ 355 (366)
T 3k26_A 281 FDYSQCDIWYMRFSMDFWQKMLA--LGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVC---D 355 (366)
T ss_dssp EECSSCCSSCCCCEECTTSSEEE--EECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEE---T
T ss_pred ccccCCcEEEEEEcCCCCCcEEE--EEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEe---C
Confidence 123568899999999 98888 5788999999999643 22233 3 68999999999999999999 6
Q ss_pred CCeEEEEEccC
Q 013871 260 PGDMAFWDYVD 270 (434)
Q Consensus 260 ~g~i~iwd~~~ 270 (434)
+|.|+|||+.+
T Consensus 356 dg~i~iwd~~~ 366 (366)
T 3k26_A 356 DASIWRWDRLR 366 (366)
T ss_dssp TSEEEEEEC--
T ss_pred CCEEEEEEecC
Confidence 67999999853
No 111
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.90 E-value=4.9e-21 Score=189.82 Aligned_cols=264 Identities=11% Similarity=0.136 Sum_probs=193.8
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCC
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDF 80 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~ 80 (434)
|++++|+ +++|++++ .|+.|+|||+.+++.+..+..+. ..+.++.|+ +.+++++ .++.|++||+...
T Consensus 162 v~~~~~~--~~~l~s~~-----~dg~i~vwd~~~~~~~~~~~~h~---~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~ 229 (445)
T 2ovr_B 162 VWSSQMR--DNIIISGS-----TDRTLKVWNAETGECIHTLYGHT---STVRCMHLH--EKRVVSGSRDATLRVWDIETG 229 (445)
T ss_dssp EEEEEEE--TTEEEEEE-----TTSCEEEEETTTTEEEEEECCCS---SCEEEEEEE--TTEEEEEETTSEEEEEESSSC
T ss_pred EEEEEec--CCEEEEEe-----CCCeEEEEECCcCcEEEEECCCC---CcEEEEEec--CCEEEEEeCCCEEEEEECCCC
Confidence 6788887 67999999 89999999999999988887643 566688884 5667666 5789999999876
Q ss_pred CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEE
Q 013871 81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVA 160 (434)
Q Consensus 81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~ 160 (434)
........+...|.++.+ + +..+++ ++.++.|++|++.+ ...+.....+...+..+.| +|..++...
T Consensus 230 ~~~~~~~~~~~~v~~~~~--~-~~~l~~-----~~~dg~i~iwd~~~---~~~~~~~~~~~~~v~~~~~--~~~~l~~~~ 296 (445)
T 2ovr_B 230 QCLHVLMGHVAAVRCVQY--D-GRRVVS-----GAYDFMVKVWDPET---ETCLHTLQGHTNRVYSLQF--DGIHVVSGS 296 (445)
T ss_dssp CEEEEEECCSSCEEEEEE--C-SSCEEE-----EETTSCEEEEEGGG---TEEEEEECCCSSCEEEEEE--CSSEEEEEE
T ss_pred cEEEEEcCCcccEEEEEE--C-CCEEEE-----EcCCCEEEEEECCC---CcEeEEecCCCCceEEEEE--CCCEEEEEe
Confidence 544444556667888888 3 344443 24467899999987 7777777788888889998 677755432
Q ss_pred EecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-cceeEEe-----
Q 013871 161 QSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL----- 234 (434)
Q Consensus 161 ~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~-~~~~~~~----- 234 (434)
.|... ..++............+...+.++.++ ++.++ +|..++.|.+||++ +..+..+
T Consensus 297 ---~d~~i---------~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~--~~~~dg~i~vwd~~~~~~~~~~~~~~~ 360 (445)
T 2ovr_B 297 ---LDTSI---------RVWDVETGNCIHTLTGHQSLTSGMELK--DNILV--SGNADSTVKIWDIKTGQCLQTLQGPNK 360 (445)
T ss_dssp ---TTSCE---------EEEETTTCCEEEEECCCCSCEEEEEEE--TTEEE--EEETTSCEEEEETTTCCEEEEECSTTS
T ss_pred ---CCCeE---------EEEECCCCCEEEEEcCCcccEEEEEEe--CCEEE--EEeCCCeEEEEECCCCcEEEEEccCCC
Confidence 34333 333333322111112346677777774 56666 57789999999995 4445554
Q ss_pred CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEee-----CC--CceEEEECCCCCEEEEEEcCCceeeCC
Q 013871 235 GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTR-----AE--CSVTSEWSPDGRYFMTATTAPRLQIDN 307 (434)
Q Consensus 235 ~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~-----~~--~~~~~~wspdg~~l~tas~~prl~~D~ 307 (434)
+...++++.|+ +++|++++ .+|.|++||+.+++.+..+. .+ .+..++|+|+|.+|++++. |+
T Consensus 361 ~~~~v~~~~~~--~~~l~s~~---~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~------dg 429 (445)
T 2ovr_B 361 HQSAVTCLQFN--KNFVITSS---DDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSR------NG 429 (445)
T ss_dssp CSSCEEEEEEC--SSEEEEEE---TTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECS------SS
T ss_pred CCCCEEEEEEC--CCEEEEEe---CCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEccc------CC
Confidence 56789999996 68999998 66799999999998887772 22 4566999999999999998 88
Q ss_pred c----EEEEeecCc
Q 013871 308 G----IKIFHHNGS 317 (434)
Q Consensus 308 ~----i~iw~~~g~ 317 (434)
. +.|||+...
T Consensus 430 ~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 430 TEETKLLVLDFDVD 443 (445)
T ss_dssp SSCCEEEEEECCCC
T ss_pred CCccEEEEEECCCC
Confidence 7 999998754
No 112
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.90 E-value=1.3e-22 Score=198.44 Aligned_cols=239 Identities=13% Similarity=0.091 Sum_probs=173.6
Q ss_pred cceEEecC-CCcEEEEEecCCCCCCCcEEEEEcCCC-------cEEEEEeecCcCCCCCCeeeecCCC-cEEEEe-cCCe
Q 013871 2 LLLLTCLR-VGLIIQTFQKSSTPQEKNVILWKTETG-------EAVYQLFQKNMTKTTWPSIRFSSDE-AVACRM-ATNE 71 (434)
Q Consensus 2 V~~l~fSP-~g~~L~t~~~~~~~~d~~v~iWd~~~g-------~~~~~~~~~~~~~~~~~~~~~S~d~-~~la~~-~~~~ 71 (434)
|.+++||| ++++|++++ .|+.|+|||+.++ +.+..+..+. ..+.+++|+|++ .+|+++ .++.
T Consensus 84 V~~~~~~p~~~~~l~s~s-----~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~---~~v~~~~~~p~~~~~l~s~~~dg~ 155 (402)
T 2aq5_A 84 VLDIAWCPHNDNVIASGS-----EDCTVMVWEIPDGGLVLPLREPVITLEGHT---KRVGIVAWHPTAQNVLLSAGCDNV 155 (402)
T ss_dssp EEEEEECTTCTTEEEEEE-----TTSEEEEEECCTTCCSSCBCSCSEEEECCS---SCEEEEEECSSBTTEEEEEETTSC
T ss_pred EEEEEeCCCCCCEEEEEe-----CCCeEEEEEccCCCCccccCCceEEecCCC---CeEEEEEECcCCCCEEEEEcCCCE
Confidence 78999999 999999999 8999999999988 5566666543 677799999998 588777 5689
Q ss_pred EEEEeCCCCCCceee--eeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeee-eecccc-eeEE
Q 013871 72 IQFFDTTDFPKGILY--RLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARR-SFFRCS-TVQL 147 (434)
Q Consensus 72 i~v~~~~~~~~~~~~--~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~-~~~~~~-~~~~ 147 (434)
|++||+......... ..+...|.+++|+|++ ..+++- +.++.|++|++.+ ++.+... ..+... ...+
T Consensus 156 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~-----~~d~~i~iwd~~~---~~~~~~~~~~~~~~~~~~~ 226 (402)
T 2aq5_A 156 ILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDG-ALICTS-----CRDKRVRVIEPRK---GTVVAEKDRPHEGTRPVHA 226 (402)
T ss_dssp EEEEETTTTEEEEEECTTTCCSCEEEEEECTTS-SCEEEE-----ETTSEEEEEETTT---TEEEEEEECSSCSSSCCEE
T ss_pred EEEEECCCCCccEEEecCCCCCceEEEEECCCC-CEEEEE-----ecCCcEEEEeCCC---CceeeeeccCCCCCcceEE
Confidence 999999875432222 2356679999999984 444432 4567999999987 6666665 455544 6889
Q ss_pred EECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcc--eeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEe
Q 013871 148 NWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH--EGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFN 225 (434)
Q Consensus 148 ~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~--~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d 225 (434)
.|+|+|..|++..+...|. .+..+++.... .....+.....+..++|+|+++.+++ +|..++.|.+||
T Consensus 227 ~~~~~~~~l~~g~~~~~d~---------~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~g~~dg~i~i~d 296 (402)
T 2aq5_A 227 VFVSEGKILTTGFSRMSER---------QVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYL-CGKGDSSIRYFE 296 (402)
T ss_dssp EECSTTEEEEEEECTTCCE---------EEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEE-EETTCSCEEEEE
T ss_pred EEcCCCcEEEEeccCCCCc---------eEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEE-EEcCCCeEEEEE
Confidence 9999998665432111222 23444443321 22334455778999999999999876 466789999999
Q ss_pred cccce--eEEe----CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCE
Q 013871 226 KKCRP--ILEL----GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK 272 (434)
Q Consensus 226 ~~~~~--~~~~----~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~ 272 (434)
+.... +..+ +..++.+++|+|+|.+++++ ++.+++|++.+++
T Consensus 297 ~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s~-----~~~~~~~~l~~~~ 344 (402)
T 2aq5_A 297 ITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVNK-----CEIARFYKLHERK 344 (402)
T ss_dssp ECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGGG-----TEEEEEEEEETTE
T ss_pred ecCCCcceEeecccccCCcccceEEecccccceec-----ceeEEEEEcCCCc
Confidence 97443 3322 46889999999999987642 2589999998764
No 113
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.90 E-value=3.8e-22 Score=191.05 Aligned_cols=266 Identities=8% Similarity=0.010 Sum_probs=179.3
Q ss_pred EecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCC----
Q 013871 6 TCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDF---- 80 (434)
Q Consensus 6 ~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~---- 80 (434)
.+++++++|+|++ .|+.|+|||+.+++.+..+.. ..+.++.|+|+ ++++ .|++|++|+....
T Consensus 43 ~~~~d~~~l~sg~-----~Dg~v~iwd~~~~~~~~~~~~-----~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~ 109 (343)
T 3lrv_A 43 SMYYDKWVCMCRC-----EDGALHFTQLKDSKTITTITT-----PNPRTGGEHPA---IISRGPCNRLLLLYPGNQITIL 109 (343)
T ss_dssp SSSEEEEEEEEEE-----ETTEEEEEEESSSSCEEEEEE-----ECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEE
T ss_pred hhcCCCCEEEEEC-----CCCcEEEEECCCCcEEEEEec-----CCceeeeeCCc---eEEecCCCeEEEEEccCceEEe
Confidence 4567899999999 899999999999998888763 34457889988 5555 5789999987631
Q ss_pred --CCceeeee----ecCCeeEEEEeC--CCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeee-ecccceeEEEECC
Q 013871 81 --PKGILYRL----RVPGVAAFEVSK--APGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRS-FFRCSTVQLNWNR 151 (434)
Q Consensus 81 --~~~~~~~~----~~~~v~~~~~sp--~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~-~~~~~~~~~~ws~ 151 (434)
........ +...|.+++|+| + +..++. .+.++.|++|++.+ +..+.... .+...+.++.|+|
T Consensus 110 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~s-----~s~dg~i~~wd~~~---~~~~~~~~~~~~~~i~~~~~~p 180 (343)
T 3lrv_A 110 DSKTNKVLREIEVDSANEIIYMYGHNEVN-TEYFIW-----ADNRGTIGFQSYED---DSQYIVHSAKSDVEYSSGVLHK 180 (343)
T ss_dssp ETTTCCEEEEEECCCSSCEEEEECCC----CCEEEE-----EETTCCEEEEESSS---SCEEEEECCCSSCCCCEEEECT
T ss_pred ecCCcceeEEeecCCCCCEEEEEcCCCCC-CCEEEE-----EeCCCcEEEEECCC---CcEEEEEecCCCCceEEEEECC
Confidence 11111111 124699999999 7 444543 24567999999987 55544432 2344678999999
Q ss_pred CCCeEEEEEEecccccCceeecceeEEEEeeCCccee--eeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccc
Q 013871 152 GSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEG--LVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR 229 (434)
Q Consensus 152 ~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~--~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~ 229 (434)
+|..|+.. ..|... ..+++...... .+...+.++|.+++|+|+|..|+. +. ++.|++||++..
T Consensus 181 dg~~lasg---~~dg~i---------~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s--~~-~~~v~iwd~~~~ 245 (343)
T 3lrv_A 181 DSLLLALY---SPDGIL---------DVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVV--EC-DQTVVCFDLRKD 245 (343)
T ss_dssp TSCEEEEE---CTTSCE---------EEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEE--EE-SSBEEEEETTSS
T ss_pred CCCEEEEE---cCCCEE---------EEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEE--Ee-CCeEEEEEcCCC
Confidence 99976543 233333 33333333222 233335789999999999999985 44 349999999743
Q ss_pred -eeEEe-----CCcCee--EEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceEEEECC---CCCEEEEEE
Q 013871 230 -PILEL-----GSGPYN--TVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSP---DGRYFMTAT 298 (434)
Q Consensus 230 -~~~~~-----~~~~~~--~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~~~wsp---dg~~l~tas 298 (434)
.+..+ +...++ +++|+|+|++|++++.+ ++.|.||++++....... ..+..+.|+| +++.|++++
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~--d~~i~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~ 321 (343)
T 3lrv_A 246 VGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNE--SNSLTIYKFDKKTKNWTK--DEESALCLQSDTADFTDMDVVC 321 (343)
T ss_dssp TTCBSSCCCBC-----CCEEEEECTTSSEEEEEETT--TTEEEEEEECTTTCSEEE--EEEEECCC----CCCCEEEEEE
T ss_pred CcceeecccccccccccceEEEECCCCCEEEEecCC--CCcEEEEEEcccccceEe--cCceeEecCccccccceeEEEe
Confidence 22222 223444 69999999999998741 469999998655322211 2344578999 999999999
Q ss_pred cCCceeeCCcEEEEeecCce
Q 013871 299 TAPRLQIDNGIKIFHHNGSL 318 (434)
Q Consensus 299 ~~prl~~D~~i~iw~~~g~~ 318 (434)
. |+.+.++-.++..
T Consensus 322 ~------d~~~~~~~~~~~~ 335 (343)
T 3lrv_A 322 G------DGGIAAILKTNDS 335 (343)
T ss_dssp E------TTEEEEEEECSSE
T ss_pred c------CCceEEEEecCCe
Confidence 9 9999999887764
No 114
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.90 E-value=1.8e-22 Score=204.10 Aligned_cols=259 Identities=8% Similarity=-0.041 Sum_probs=175.6
Q ss_pred CCCCeeeecCCC---------cEEEEec--------------------CCeEEEEeCCCCCCce----eeeeecCCeeEE
Q 013871 50 TTWPSIRFSSDE---------AVACRMA--------------------TNEIQFFDTTDFPKGI----LYRLRVPGVAAF 96 (434)
Q Consensus 50 ~~~~~~~~S~d~---------~~la~~~--------------------~~~i~v~~~~~~~~~~----~~~~~~~~v~~~ 96 (434)
..+.+++|+|++ ++||++. |++|+||++....... ....+...|..+
T Consensus 134 ~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v 213 (524)
T 2j04_B 134 GLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDL 213 (524)
T ss_dssp C--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEE
T ss_pred CceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEE
Confidence 455588999886 7777642 3589999986643211 122335679999
Q ss_pred EEeCCC-----CCeEEEEecCCCCCCceEEEEEcCCCCC--------CCceeeeeecccceeEEEECCCCCeEEEEEEec
Q 013871 97 EVSKAP-----GSHVAVFVPESKGSPASVQIYACGKDLQ--------SQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSD 163 (434)
Q Consensus 97 ~~sp~~-----~~~ia~~~~~~~~~~~~v~i~~~~~~~~--------~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~ 163 (434)
+|+|++ ..++|. .+.++.|+||++..... ..+......+...+.++.|++++ .|+ +..
T Consensus 214 ~wsp~~~~~~~~~~LAs-----~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~la---sgs 284 (524)
T 2j04_B 214 KWHEGCHAPHLVGCLSF-----VSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVV---CGF 284 (524)
T ss_dssp EECSSCCCSSSSCEEEE-----EETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EEE---EEE
T ss_pred EECCCCCCCCCCceEEE-----EecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-eEE---EEe
Confidence 999972 245654 34567999999976310 11233455677888999999864 332 222
Q ss_pred ccccCceeecceeEEEEeeCCcceeee-ecCCCCCeEEE--EECcCC-CEEEEEEccCCCeEEEEecccc-ee--EEeCC
Q 013871 164 VDKTNQSYYGESKLNYLTTDGTHEGLV-PLRKEGPVHDV--QWSYSG-SEFAVVYGFMPASATIFNKKCR-PI--LELGS 236 (434)
Q Consensus 164 ~d~~~~~~~g~~~l~~l~~~~~~~~~v-~l~~~~~i~~v--~wspdg-~~~av~~g~~~~~v~l~d~~~~-~~--~~~~~ 236 (434)
.|.+.+ ||.+ ........ ...+.++|.++ +|+|+| ..|+ +++.|++|+|||++.. .+ ...+.
T Consensus 285 ~DgtV~-------lWD~--~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~la--S~S~D~tvklWD~~~~~~~~~~~~~~ 353 (524)
T 2j04_B 285 KNGFVA-------EFDL--TDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVS--TVAVDGYFYIFNPKDIATTKTTVSRF 353 (524)
T ss_dssp TTSEEE-------EEET--TBCSSCSEEEECSSSCEEEEEEECCTTSCCEEE--EEETTSEEEEECGGGHHHHCEEEEEC
T ss_pred CCCEEE-------EEEC--CCCCCceEEeecccccEEEEEEEcCCCCCeEEE--EeccCCeEEEEECCCCCccccccccc
Confidence 444443 3333 22111111 12357899999 678888 6777 6888999999999642 22 22222
Q ss_pred --cCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEE
Q 013871 237 --GPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIF 312 (434)
Q Consensus 237 --~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw 312 (434)
..+.+++|||+|+.+++++ .+++|++||++++.++..+.+| .+..++|||+|++|++|+. |+.|+||
T Consensus 354 ~~~~v~~v~fsp~~~~l~s~~---~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~------Dgtv~lw 424 (524)
T 2j04_B 354 RGSNLVPVVYCPQIYSYIYSD---GASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSA------DGSLIIT 424 (524)
T ss_dssp SCCSCCCEEEETTTTEEEEEC---SSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEET------TTEEECC
T ss_pred ccCcccceEeCCCcCeEEEeC---CCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEEC------CCEEEEE
Confidence 3578999999999999888 4469999999988766666555 5677999999999999999 9999999
Q ss_pred eecCceeeeee-c------ccceeeEEEcCCC
Q 013871 313 HHNGSLFFKKM-F------DKLFQAEWKPVSP 337 (434)
Q Consensus 313 ~~~g~~~~~~~-~------~~~~~~~w~p~~~ 337 (434)
+..++++.... . ..++.++|+|++.
T Consensus 425 d~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~ 456 (524)
T 2j04_B 425 NAARRLLHGIKNSSATQKSLRLWKWDYSIKDD 456 (524)
T ss_dssp BSCSSTTTCC------CCCCEEEECBCCSSSC
T ss_pred echHhhccccccCccceeeeEEEEeccCCCCC
Confidence 99877554311 1 1467889998875
No 115
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.90 E-value=6.8e-23 Score=216.81 Aligned_cols=236 Identities=14% Similarity=0.198 Sum_probs=166.5
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcC--CCcEEEEEeecCcCCCCCCeeeecCC--CcEEEEec-CCeEEEEe
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTE--TGEAVYQLFQKNMTKTTWPSIRFSSD--EAVACRMA-TNEIQFFD 76 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~--~g~~~~~~~~~~~~~~~~~~~~~S~d--~~~la~~~-~~~i~v~~ 76 (434)
|++++|||+|++|++++ .|+.|+|||+. +++.+..+..+ ...+.+++|+++ +++|++++ |+.|++|+
T Consensus 12 V~~l~~s~dg~~latg~-----~dg~I~vwd~~~~~~~~~~~l~~h---~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd 83 (753)
T 3jro_A 12 IHDAVLDYYGKRLATCS-----SDKTIKIFEVEGETHKLIDTLTGH---EGPVWRVDWAHPKFGTILASCSYDGKVLIWK 83 (753)
T ss_dssp EEEECCCSSSCCEEEEE-----TTTEEEEEEEETTEEEEEEEECCC---SSCEEEEEECCTTSCSEEEEEETTSCEEEEE
T ss_pred eEEEEECCCCCeEEEEE-----CCCcEEEEecCCCCCccceeccCC---cCceEEEEecCCCCCCEEEEEeCCCeEEEEE
Confidence 78999999999999999 89999999998 44566666554 367779999988 89998884 68999999
Q ss_pred CCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCC--CC
Q 013871 77 TTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRG--ST 154 (434)
Q Consensus 77 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~--G~ 154 (434)
+....... +.....+...+.++.|+|+ |.
T Consensus 84 ~~~~~~~~-------------------------------------------------~~~~~~h~~~V~~v~~sp~~~~~ 114 (753)
T 3jro_A 84 EENGRWSQ-------------------------------------------------IAVHAVHSASVNSVQWAPHEYGP 114 (753)
T ss_dssp EETTEEEE-------------------------------------------------EEEECCCSSCEEEEEECCGGGCS
T ss_pred CCCCcccc-------------------------------------------------cccccCCCCCeEEEEECCCCCCC
Confidence 76521000 0001112234556777777 66
Q ss_pred eEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECc-------------CCCEEEEEEccCCCeE
Q 013871 155 GLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSY-------------SGSEFAVVYGFMPASA 221 (434)
Q Consensus 155 ~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wsp-------------dg~~~av~~g~~~~~v 221 (434)
.+++.. .|...+ +|.+.............+.+.|.+++|+| ++..|+ +|..++.|
T Consensus 115 ~l~sgs---~dg~I~-------vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~--sgs~dg~I 182 (753)
T 3jro_A 115 LLLVAS---SDGKVS-------VVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFV--TGGADNLV 182 (753)
T ss_dssp EEEEEE---TTSEEE-------EEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEE--EEETTSCE
T ss_pred EEEEEe---CCCcEE-------EEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEE--EEECCCeE
Confidence 654431 222222 33332221111222233578999999999 577777 57789999
Q ss_pred EEEecccc-----eeEEe--CCcCeeEEEECCC---CCeEEEEecCCCCCeEEEEEccCCE-----EEEEeeCC--CceE
Q 013871 222 TIFNKKCR-----PILEL--GSGPYNTVRWNPK---GKFLCLAGFGNLPGDMAFWDYVDGK-----QLGTTRAE--CSVT 284 (434)
Q Consensus 222 ~l~d~~~~-----~~~~~--~~~~~~~i~~SP~---g~~l~~~~~~~~~g~i~iwd~~~~~-----~i~~~~~~--~~~~ 284 (434)
++||++.. .+..+ |...+++++|+|+ |++|++++ .+|.|++||+.+++ .+.....+ .+..
T Consensus 183 ~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s---~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~ 259 (753)
T 3jro_A 183 KIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVS---QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWR 259 (753)
T ss_dssp EEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEE---SSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCC
T ss_pred EEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEe---cCCEEEEecCCCCCCcceeEEeccCCCCCceEE
Confidence 99998642 22333 7889999999999 89999998 56799999998763 22222222 5567
Q ss_pred EEECCCCCEEEEEEcCCceeeCCcEEEEeec
Q 013871 285 SEWSPDGRYFMTATTAPRLQIDNGIKIFHHN 315 (434)
Q Consensus 285 ~~wspdg~~l~tas~~prl~~D~~i~iw~~~ 315 (434)
++|+|+|++|++++. |+.|+||++.
T Consensus 260 l~~spdg~~l~s~s~------Dg~I~vwd~~ 284 (753)
T 3jro_A 260 ASWSLSGNVLALSGG------DNKVTLWKEN 284 (753)
T ss_dssp EEECTTTCCEEEECS------SSCEECCBCC
T ss_pred EEEcCCCCEEEEEcC------CCEEEEEecC
Confidence 999999999999999 9999999986
No 116
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.90 E-value=7.4e-22 Score=187.82 Aligned_cols=257 Identities=10% Similarity=0.006 Sum_probs=187.2
Q ss_pred CCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCCCC---ceeeeeecCCeeEEEEeCCCCC-eEEEEecCCCCCCceEEE
Q 013871 48 TKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDFPK---GILYRLRVPGVAAFEVSKAPGS-HVAVFVPESKGSPASVQI 122 (434)
Q Consensus 48 ~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~~~---~~~~~~~~~~v~~~~~sp~~~~-~ia~~~~~~~~~~~~v~i 122 (434)
|...+.+++|+||+++|+++ .++.|++|++..... ......+...|.+++|+|+ +. .+++- +.++.|++
T Consensus 10 h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~-----~~dg~i~~ 83 (342)
T 1yfq_A 10 PKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDN-TDLQIYVG-----TVQGEILK 83 (342)
T ss_dssp CSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEES-SSEEEEEE-----ETTSCEEE
T ss_pred CCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCC-CCcEEEEE-----cCCCeEEE
Confidence 45778899999999999887 468999999877551 1223345668999999998 45 55542 34578999
Q ss_pred EEc-CCCCCCCceeeeee--cccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCC--c------ceeeee
Q 013871 123 YAC-GKDLQSQPLARRSF--FRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDG--T------HEGLVP 191 (434)
Q Consensus 123 ~~~-~~~~~~~~i~~~~~--~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~--~------~~~~v~ 191 (434)
|++ .. . ....... +...+..+.|+| +..++... .|... ..+++.. . ......
T Consensus 84 wd~~~~---~-~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~---~d~~i---------~iwd~~~~~~~~~~~~~~~~~~ 146 (342)
T 1yfq_A 84 VDLIGS---P-SFQALTNNEANLGICRICKYG-DDKLIAAS---WDGLI---------EVIDPRNYGDGVIAVKNLNSNN 146 (342)
T ss_dssp ECSSSS---S-SEEECBSCCCCSCEEEEEEET-TTEEEEEE---TTSEE---------EEECHHHHTTBCEEEEESCSSS
T ss_pred EEeccC---C-ceEeccccCCCCceEEEEeCC-CCEEEEEc---CCCeE---------EEEcccccccccccccCCeeeE
Confidence 999 76 3 3355566 788889999999 87765432 33333 2332221 0 122223
Q ss_pred cCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-c--ee--EE-eCCcCeeEEEECC-CCCeEEEEecCCCCCeEE
Q 013871 192 LRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-R--PI--LE-LGSGPYNTVRWNP-KGKFLCLAGFGNLPGDMA 264 (434)
Q Consensus 192 l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~-~--~~--~~-~~~~~~~~i~~SP-~g~~l~~~~~~~~~g~i~ 264 (434)
+.+.+.|.+++|+|++ ++ ++..++.|.+||++. . .. .. .+...+.+++|+| +|++|++++ .+|.|.
T Consensus 147 ~~~~~~v~~~~~~~~~--l~--~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~---~dg~i~ 219 (342)
T 1yfq_A 147 TKVKNKIFTMDTNSSR--LI--VGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSS---IDGRVA 219 (342)
T ss_dssp SSSCCCEEEEEECSSE--EE--EEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEE---TTSEEE
T ss_pred EeeCCceEEEEecCCc--EE--EEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEe---cCCcEE
Confidence 4467899999999987 44 477789999999976 2 11 22 2577899999999 999999998 567999
Q ss_pred EEEccCC------EEEEEeeCC-----------CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec-Cceeeee--e-
Q 013871 265 FWDYVDG------KQLGTTRAE-----------CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLFFKK--M- 323 (434)
Q Consensus 265 iwd~~~~------~~i~~~~~~-----------~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~-g~~~~~~--~- 323 (434)
+||++.. +.+..+..+ .+..++|+|+|++|++++. |+.|+|||+. ++++... +
T Consensus 220 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~------dg~i~vwd~~~~~~~~~~~~~h 293 (342)
T 1yfq_A 220 VEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGS------DGIISCWNLQTRKKIKNFAKFN 293 (342)
T ss_dssp EEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEET------TSCEEEEETTTTEEEEECCCCS
T ss_pred EEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecC------CceEEEEcCccHhHhhhhhccc
Confidence 9999876 556666655 5667999999999999999 9999999996 5555543 3
Q ss_pred cccceeeEEEcCCCCCCCC
Q 013871 324 FDKLFQAEWKPVSPDKFGD 342 (434)
Q Consensus 324 ~~~~~~~~w~p~~~~~~~~ 342 (434)
...+..+. |++..++..
T Consensus 294 ~~~v~~~~--~~~~~l~s~ 310 (342)
T 1yfq_A 294 EDSVVKIA--CSDNILCLA 310 (342)
T ss_dssp SSEEEEEE--ECSSEEEEE
T ss_pred CCCceEec--CCCCeEEEE
Confidence 45677777 887776665
No 117
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.90 E-value=1.4e-21 Score=189.65 Aligned_cols=291 Identities=10% Similarity=0.029 Sum_probs=180.3
Q ss_pred eEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC-CeEEEEeCCCCCC
Q 013871 4 LLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT-NEIQFFDTTDFPK 82 (434)
Q Consensus 4 ~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~-~~i~v~~~~~~~~ 82 (434)
..+|||||++|++.+... ...+|.+||+.+|+......... .....+.|||||+.|++... ..|.+|++.....
T Consensus 40 ~~~~SpDg~~l~~~~~~~--g~~~l~~~d~~~g~~~~lt~~~~---~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~ 114 (388)
T 3pe7_A 40 QKCFTRDGSKLLFGGAFD--GPWNYYLLDLNTQVATQLTEGRG---DNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEE 114 (388)
T ss_dssp SCCBCTTSCEEEEEECTT--SSCEEEEEETTTCEEEECCCSSC---BCSSSCEECTTSSEEEEEETTTEEEEEETTTCCE
T ss_pred CccCCCCCCEEEEEEcCC--CCceEEEEeCCCCceEEeeeCCC---CCccceEEcCCCCEEEEEeCCCeEEEEECCCCcc
Confidence 478999999999988311 12369999999887655443322 23325789999999998864 5999999987543
Q ss_pred ceeeeeecCCeeE--EEEeCCCCCeEEEE-ecCC----------------CCCCceEEEEEcCCCCCCCceeeeeecccc
Q 013871 83 GILYRLRVPGVAA--FEVSKAPGSHVAVF-VPES----------------KGSPASVQIYACGKDLQSQPLARRSFFRCS 143 (434)
Q Consensus 83 ~~~~~~~~~~v~~--~~~sp~~~~~ia~~-~~~~----------------~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~ 143 (434)
......+...+.. +.++|++ ..++.. .... .+....|.+|++.+ ++ ..........
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~dg-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~---g~-~~~l~~~~~~ 189 (388)
T 3pe7_A 115 NVVYQVPAEWVGYGTWVANSDC-TKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKT---GE-STVILQENQW 189 (388)
T ss_dssp EEEEECCTTEEEEEEEEECTTS-SEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTT---CC-EEEEEEESSC
T ss_pred eeeeechhhcccccceeECCCC-CeeccccccCcccccccccchhhhhhccCCcceEEEEECCC---Cc-eEEeecCCcc
Confidence 2222333332332 3347874 444332 2111 12346788888876 33 3344444455
Q ss_pred eeEEEECC-CCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCC-CCeEEEEECcCCCEEEEEEccCCC--
Q 013871 144 TVQLNWNR-GSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKE-GPVHDVQWSYSGSEFAVVYGFMPA-- 219 (434)
Q Consensus 144 ~~~~~ws~-~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~-~~i~~v~wspdg~~~av~~g~~~~-- 219 (434)
...+.|+| +|+.|++......+. +...|+.++..+.....+.-... ..+..++|||||+.+++++.....
T Consensus 190 ~~~~~~sp~dg~~l~~~~~~~~~~------~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~ 263 (388)
T 3pe7_A 190 LGHPIYRPYDDSTVAFCHEGPHDL------VDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPD 263 (388)
T ss_dssp EEEEEEETTEEEEEEEEECSCTTT------SSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCC
T ss_pred ccccEECCCCCCEEEEEEecCCCC------CcceEEEEeCCCCceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCc
Confidence 67899999 999988765321110 12357888776653333322212 257789999999998875443222
Q ss_pred -eEEEEecccceeEE---eCC-----cCeeEEEECCCCCeEEEEecC------CCCCeEEEEEccCCEEEEEeeCCC---
Q 013871 220 -SATIFNKKCRPILE---LGS-----GPYNTVRWNPKGKFLCLAGFG------NLPGDMAFWDYVDGKQLGTTRAEC--- 281 (434)
Q Consensus 220 -~v~l~d~~~~~~~~---~~~-----~~~~~i~~SP~g~~l~~~~~~------~~~g~i~iwd~~~~~~i~~~~~~~--- 281 (434)
.|.+||+.+..... +.. .....+.|||||+.|++...+ ..+..|++||+.+++......+..
T Consensus 264 ~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~ 343 (388)
T 3pe7_A 264 RFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVARHDTSWK 343 (388)
T ss_dssp EEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEEEEEECCCCCC
T ss_pred ceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEEeccccCccc
Confidence 39999997554332 221 012234799999988865321 235689999999887654444333
Q ss_pred ---------ceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec
Q 013871 282 ---------SVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN 315 (434)
Q Consensus 282 ---------~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~ 315 (434)
...++|||||++|+.++.. ++...||.++
T Consensus 344 ~~~~~~~~~~~~~~~spDg~~l~~~s~~-----~g~~~l~~~~ 381 (388)
T 3pe7_A 344 VFEGDRQVTHPHPSFTPDDKQILFTSDV-----HGKPALYLAT 381 (388)
T ss_dssp CBTTBSSTTCCCCEECTTSSEEEEEECT-----TSSCEEEEEE
T ss_pred ccccccccCCCCccCCCCCCEEEEEecC-----CCceeEEEEE
Confidence 4568999999999988864 6667777653
No 118
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.90 E-value=7.2e-21 Score=199.66 Aligned_cols=291 Identities=13% Similarity=0.113 Sum_probs=186.2
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCC--
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTD-- 79 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~-- 79 (434)
|.+++|||| ++|+... ++.|++||+.+++....... . ..+..++|||||++|++..++.|.+|++..
T Consensus 84 v~~~~~spd-~~~~~~~------~~~i~~~d~~~~~~~~l~~~-~---~~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~ 152 (706)
T 2z3z_A 84 SFRTLDAGR-GLVVLFT------QGGLVGFDMLARKVTYLFDT-N---EETASLDFSPVGDRVAYVRNHNLYIARGGKLG 152 (706)
T ss_dssp CEEEEETTT-TEEEEEE------TTEEEEEETTTTEEEEEECC-T---TCCTTCEECTTSSEEEEEETTEEEEEECBCTT
T ss_pred ceeEEECCC-CeEEEEE------CCEEEEEECCCCceEEccCC-c---ccccCCcCCCCCCEEEEEECCeEEEEecCccc
Confidence 678999999 6665544 48999999998876443322 2 445588999999999999889999999876
Q ss_pred ---CCCceeeeeecCC--------------eeEEEEeCCCCCeEEEEecC----------------------------CC
Q 013871 80 ---FPKGILYRLRVPG--------------VAAFEVSKAPGSHVAVFVPE----------------------------SK 114 (434)
Q Consensus 80 ---~~~~~~~~~~~~~--------------v~~~~~sp~~~~~ia~~~~~----------------------------~~ 114 (434)
............. +..+.|||+ +..|++..-+ ..
T Consensus 153 ~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpD-g~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~ 231 (706)
T 2z3z_A 153 EGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPK-GSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTP 231 (706)
T ss_dssp SCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTT-SSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSC
T ss_pred ccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCC-CCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCC
Confidence 4332211222222 478999999 5556554311 11
Q ss_pred CCCceEEEEEcCCCCCCCceeeee--ecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCc-ceeeee
Q 013871 115 GSPASVQIYACGKDLQSQPLARRS--FFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGT-HEGLVP 191 (434)
Q Consensus 115 ~~~~~v~i~~~~~~~~~~~i~~~~--~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~-~~~~v~ 191 (434)
.....|.+|++.+ +....... .+......+.|+|||+.|++.... ... ....++.++..+. ....+.
T Consensus 232 ~~~~~l~~~d~~~---~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~---~~~----~~~~v~~~d~~~g~~~~~~~ 301 (706)
T 2z3z_A 232 SHHVTVGIYHLAT---GKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVN---RAQ----NECKVNAYDAETGRFVRTLF 301 (706)
T ss_dssp CCEEEEEEEETTT---TEEEECCCCSCTTCEEEEEEECTTSSEEEEEEEC---TTS----CEEEEEEEETTTCCEEEEEE
T ss_pred CCeeEEEEEECCC---CceEeeccCCCCceeEeeEEEECCCCEEEEEEeC---CCC----CeeEEEEEECCCCceeeEEE
Confidence 2346789999876 33222111 233456789999999988765322 111 1224667766554 222221
Q ss_pred c-CCC---CCeEEEEECc--CCCEEEEEEccCCCeEEEEe--cccceeEEe--CCcCeeE-EEECCCCCeEEEEecCCC-
Q 013871 192 L-RKE---GPVHDVQWSY--SGSEFAVVYGFMPASATIFN--KKCRPILEL--GSGPYNT-VRWNPKGKFLCLAGFGNL- 259 (434)
Q Consensus 192 l-~~~---~~i~~v~wsp--dg~~~av~~g~~~~~v~l~d--~~~~~~~~~--~~~~~~~-i~~SP~g~~l~~~~~~~~- 259 (434)
. ... ..+.+++|+| ||+.++ ++..++.+.||+ ..+..+..+ +...+.. +.|||+|+.|++++.++.
T Consensus 302 ~~~~~~~~~~~~~~~~sp~~dg~~l~--~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~ 379 (706)
T 2z3z_A 302 VETDKHYVEPLHPLTFLPGSNNQFIW--QSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASP 379 (706)
T ss_dssp EEECSSCCCCCSCCEECTTCSSEEEE--EECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCT
T ss_pred EccCCCeECccCCceeecCCCCEEEE--EEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCC
Confidence 1 111 2346789999 998655 355566666664 456656655 3445665 799999998888775432
Q ss_pred -CCeEEEEEccCCEEEEEeeCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCce
Q 013871 260 -PGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL 318 (434)
Q Consensus 260 -~g~i~iwd~~~~~~i~~~~~~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~ 318 (434)
...|+.||..+++.........+..++|||||++|+++...+. ..+.|++|+..+..
T Consensus 380 ~~~~l~~~d~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~--~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 380 LERHFYCIDIKGGKTKDLTPESGMHRTQLSPDGSAIIDIFQSPT--VPRKVTVTNIGKGS 437 (706)
T ss_dssp TCBEEEEEETTCCCCEESCCSSSEEEEEECTTSSEEEEEEECSS--CSCEEEEEESSSCE
T ss_pred ceEEEEEEEcCCCCceeccCCCceEEEEECCCCCEEEEEecCCC--CCcEEEEEECCCCe
Confidence 2378888887775333223335667999999999998866321 12569999987654
No 119
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.90 E-value=8.6e-21 Score=188.83 Aligned_cols=255 Identities=11% Similarity=0.108 Sum_probs=183.6
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeec--CCCcEEEEec-CCeEEEEeCC
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFS--SDEAVACRMA-TNEIQFFDTT 78 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S--~d~~~la~~~-~~~i~v~~~~ 78 (434)
|++++|+|++ +|++++ .|+.|+|||+.+++++..+..+. ..+.+++|+ +++.++++++ ++.|++|++.
T Consensus 165 V~~l~~~~~~-~l~s~s-----~dg~i~vwd~~~~~~~~~~~~h~---~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~ 235 (464)
T 3v7d_B 165 VWALKYAHGG-ILVSGS-----TDRTVRVWDIKKGCCTHVFEGHN---STVRCLDIVEYKNIKYIVTGSRDNTLHVWKLP 235 (464)
T ss_dssp EEEEEECSTT-EEEEEE-----TTSCEEEEETTTTEEEEEECCCS---SCEEEEEEEESSSCEEEEEEETTSCEEEEECC
T ss_pred EEEEEEcCCC-EEEEEe-----CCCCEEEEECCCCcEEEEECCCC---CccEEEEEecCCCCCEEEEEcCCCcEEEeeCC
Confidence 7899999998 899998 89999999999999988887543 667788888 5888888884 6899999987
Q ss_pred CCCCce-----------------------eeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCcee
Q 013871 79 DFPKGI-----------------------LYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLA 135 (434)
Q Consensus 79 ~~~~~~-----------------------~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~ 135 (434)
...... ....+...+..+ +++ +..+++ ++.++.|++|++.+ .+.+.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~-~~~l~~-----~~~d~~i~vwd~~~---~~~~~ 304 (464)
T 3v7d_B 236 KESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGH-GNIVVS-----GSYDNTLIVWDVAQ---MKCLY 304 (464)
T ss_dssp CCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEE-TTEEEE-----EETTSCEEEEETTT---TEEEE
T ss_pred CCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCC-CCEEEE-----EeCCCeEEEEECCC---CcEEE
Confidence 643211 111122234443 454 334443 24567899999987 77888
Q ss_pred eeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeec-CCCCCeEEEEECcCCCEEEEEE
Q 013871 136 RRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL-RKEGPVHDVQWSYSGSEFAVVY 214 (434)
Q Consensus 136 ~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l-~~~~~i~~v~wspdg~~~av~~ 214 (434)
....+...+..+.|+|+|..++... .|...+ .++.... .....+ .+...|.+++|+ ++.++ +
T Consensus 305 ~~~~~~~~v~~~~~~~~~~~l~sg~---~dg~i~---------vwd~~~~-~~~~~~~~h~~~v~~~~~~--~~~l~--s 367 (464)
T 3v7d_B 305 ILSGHTDRIYSTIYDHERKRCISAS---MDTTIR---------IWDLENG-ELMYTLQGHTALVGLLRLS--DKFLV--S 367 (464)
T ss_dssp EECCCSSCEEEEEEETTTTEEEEEE---TTSCEE---------EEETTTT-EEEEEECCCSSCEEEEEEC--SSEEE--E
T ss_pred EecCCCCCEEEEEEcCCCCEEEEEe---CCCcEE---------EEECCCC-cEEEEEeCCCCcEEEEEEc--CCEEE--E
Confidence 8888888999999999999865432 344333 3333333 222222 357899999998 45666 5
Q ss_pred ccCCCeEEEEeccc-ceeEEe-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEE-eeCC--CceEEEECC
Q 013871 215 GFMPASATIFNKKC-RPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGT-TRAE--CSVTSEWSP 289 (434)
Q Consensus 215 g~~~~~v~l~d~~~-~~~~~~-~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~-~~~~--~~~~~~wsp 289 (434)
+..|+.|++||++. .....+ +...+..++|+|+|++|++++ + |.|++||+++++.+.. ...+ .+..++|+
T Consensus 368 ~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-d---g~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~- 442 (464)
T 3v7d_B 368 AAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-E---NQFNIYNLRSGKLVHANILKDADQIWSVNFK- 442 (464)
T ss_dssp EETTSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE-T---TEEEEEETTTCCEEESCTTTTCSEEEEEEEE-
T ss_pred EeCCCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEec-C---CeEEEEECCCCcEEehhhccCCCcEEEEEec-
Confidence 77899999999964 344444 566778899999999999886 3 6999999999998876 3333 45558886
Q ss_pred CCCEEEEEEc
Q 013871 290 DGRYFMTATT 299 (434)
Q Consensus 290 dg~~l~tas~ 299 (434)
++.+++++.
T Consensus 443 -~~~l~~~~~ 451 (464)
T 3v7d_B 443 -GKTLVAAVE 451 (464)
T ss_dssp -TTEEEEEEE
T ss_pred -CCEEEEEEE
Confidence 566666665
No 120
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.90 E-value=4.7e-23 Score=205.11 Aligned_cols=246 Identities=9% Similarity=0.014 Sum_probs=175.6
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCc--CCCCCCeeeecCCCcEEEEec-CCeEEEEeCC
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNM--TKTTWPSIRFSSDEAVACRMA-TNEIQFFDTT 78 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~--~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~ 78 (434)
|++++|||||++|++.+ .|++|+|||..+ ++..+. +.. ....+.+++|||||++||+++ |++|+||++.
T Consensus 88 V~~vawSPdG~~LAs~s-----~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~ 159 (588)
T 2j04_A 88 PRVCKPSPIDDWMAVLS-----NNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIR 159 (588)
T ss_dssp EEEEEECSSSSCEEEEE-----TTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECC
T ss_pred EEEEEECCCCCEEEEEe-----CCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECC
Confidence 78999999999999999 899999999544 555554 321 023577999999999999996 6899999998
Q ss_pred CCCC-------ceeee----eecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeee-eecccceeE
Q 013871 79 DFPK-------GILYR----LRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARR-SFFRCSTVQ 146 (434)
Q Consensus 79 ~~~~-------~~~~~----~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~-~~~~~~~~~ 146 (434)
.... ....+ .|...|.+++|||++ ++.. +.+..|++|++............ ..+...+..
T Consensus 160 ~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg---Laas-----s~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~s 231 (588)
T 2j04_A 160 KNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV---LVAA-----LSNNSVFSMTVSASSHQPVSRMIQNASRRKITD 231 (588)
T ss_dssp CCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE---EEEE-----ETTCCEEEECCCSSSSCCCEEEEECCCSSCCCC
T ss_pred CCccccccceeeeeeecccccccccEEEEEEcCCc---EEEE-----eCCCeEEEEECCCCccccceeeecccccCcEEE
Confidence 7432 11221 123579999999985 3332 34679999999762100122333 467778889
Q ss_pred EEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEE--CcCCCEEEEEEccCCCeEEEE
Q 013871 147 LNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQW--SYSGSEFAVVYGFMPASATIF 224 (434)
Q Consensus 147 ~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~w--spdg~~~av~~g~~~~~v~l~ 224 (434)
+.|+ |+.|+.. .++ .+++++..+.........+...|.+++| +||+..++ .++.+++ ++|
T Consensus 232 vaFs--g~~LASa----~~~---------tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La--~a~edG~-klw 293 (588)
T 2j04_A 232 LKIV--DYKVVLT----CPG---------YVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILL--MSNKTSY-KVL 293 (588)
T ss_dssp EEEE--TTEEEEE----CSS---------EEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEE--ECSSCEE-EEE
T ss_pred EEEE--CCEEEEE----eCC---------eEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEE--EEcCCCC-EEE
Confidence 9999 6665543 122 3555555565444555567889999999 99997777 4788888 888
Q ss_pred ecccceeEEeCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC-CceEEEECCCCCEEEEEEcC
Q 013871 225 NKKCRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-CSVTSEWSPDGRYFMTATTA 300 (434)
Q Consensus 225 d~~~~~~~~~~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-~~~~~~wspdg~~l~tas~~ 300 (434)
... .+.++||+..++.+ ++++++|+..... +..+++. .+..++|||||+.+|+++.-
T Consensus 294 ~~d-------------~~~~spd~~l~a~~-----d~~v~lW~~~g~~-l~~~~~~~~I~~va~SPdG~~lA~~~~i 351 (588)
T 2j04_A 294 LED-------------ELHVTADNIIAPYL-----EKKFKKWSTIWNE-FNNYETTLVIHGISLSPDGYSIAIVYDM 351 (588)
T ss_dssp ESS-------------SEEEECCCSSHHHH-----HHHHHHTTTTTTS-SSSSCCEEEEEEEEECTTSSEEEEEEEE
T ss_pred eec-------------cEEECCCceEEEEc-----CCEEEEEECCCCc-eeeeccceEEEEEEECCCCCEEEEEEec
Confidence 766 26699999988764 3699999876443 3234332 34459999999999999873
No 121
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.89 E-value=7.7e-21 Score=176.06 Aligned_cols=256 Identities=11% Similarity=0.043 Sum_probs=171.2
Q ss_pred CCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCC-CCCceeeeee-cCCeeEEEEeC
Q 013871 23 PQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTD-FPKGILYRLR-VPGVAAFEVSK 100 (434)
Q Consensus 23 ~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~-~~~~~~~~~~-~~~v~~~~~sp 100 (434)
..|+.|++||+.+++....+.+ . ..+.+++||||+++|+++.++.|.+|++.. .........+ ...+..+.|+|
T Consensus 19 ~~~~~i~~~d~~~~~~~~~~~~-~---~~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp 94 (297)
T 2ojh_A 19 SMRSSIEIFNIRTRKMRVVWQT-P---ELFEAPNWSPDGKYLLLNSEGLLYRLSLAGDPSPEKVDTGFATICNNDHGISP 94 (297)
T ss_dssp CCCEEEEEEETTTTEEEEEEEE-S---SCCEEEEECTTSSEEEEEETTEEEEEESSSCCSCEECCCTTCCCBCSCCEECT
T ss_pred CcceeEEEEeCCCCceeeeccC-C---cceEeeEECCCCCEEEEEcCCeEEEEeCCCCCCceEeccccccccccceEECC
Confidence 3678999999999886644433 2 566699999999999999999999999987 5432222222 24578899999
Q ss_pred CCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEE
Q 013871 101 APGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYL 180 (434)
Q Consensus 101 ~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l 180 (434)
+ +..+++.... ......|.++++.. + ........ .....+.|+|+|+.|++....+ +...||.+
T Consensus 95 d-g~~l~~~~~~-~~~~~~l~~~~~~~---~-~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~---------~~~~l~~~ 158 (297)
T 2ojh_A 95 D-GALYAISDKV-EFGKSAIYLLPSTG---G-TPRLMTKN-LPSYWHGWSPDGKSFTYCGIRD---------QVFDIYSM 158 (297)
T ss_dssp T-SSEEEEEECT-TTSSCEEEEEETTC---C-CCEECCSS-SSEEEEEECTTSSEEEEEEEET---------TEEEEEEE
T ss_pred C-CCEEEEEEeC-CCCcceEEEEECCC---C-ceEEeecC-CCccceEECCCCCEEEEEECCC---------CceEEEEE
Confidence 9 4555544321 11223444444433 2 23333222 2367789999999987654432 22357777
Q ss_pred eeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEec--ccceeEEe--CCcCeeEEEECCCCCeEEEEec
Q 013871 181 TTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNK--KCRPILEL--GSGPYNTVRWNPKGKFLCLAGF 256 (434)
Q Consensus 181 ~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~--~~~~~~~~--~~~~~~~i~~SP~g~~l~~~~~ 256 (434)
+..+... .........+.+++|+|+|+.+++. +..++.+.+|++ .+..+..+ +...+..+.|+|+|++|++++.
T Consensus 159 ~~~~~~~-~~~~~~~~~~~~~~~s~dg~~l~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~ 236 (297)
T 2ojh_A 159 DIDSGVE-TRLTHGEGRNDGPDYSPDGRWIYFN-SSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSY 236 (297)
T ss_dssp ETTTCCE-EECCCSSSCEEEEEECTTSSEEEEE-ECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEE
T ss_pred ECCCCcc-eEcccCCCccccceECCCCCEEEEE-ecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEc
Confidence 6655432 2222345789999999999998874 334566777765 45555555 4566788999999999988875
Q ss_pred CC--------CCCeEEEEEccCCEE--EEEeeCC--CceEEEECCCCCEEEEEEcC
Q 013871 257 GN--------LPGDMAFWDYVDGKQ--LGTTRAE--CSVTSEWSPDGRYFMTATTA 300 (434)
Q Consensus 257 ~~--------~~g~i~iwd~~~~~~--i~~~~~~--~~~~~~wspdg~~l~tas~~ 300 (434)
+. ..+.|++||+.+++. +..+..+ .+..++|+|||++|++++..
T Consensus 237 ~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~ 292 (297)
T 2ojh_A 237 DADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYF 292 (297)
T ss_dssp ETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEEC
T ss_pred CCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEec
Confidence 42 125799999988743 4443332 55669999999999999873
No 122
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.89 E-value=3.6e-21 Score=187.15 Aligned_cols=273 Identities=13% Similarity=0.105 Sum_probs=163.0
Q ss_pred cceEEecC-CCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCC---CcEEEEe-cCCeEEEEe
Q 013871 2 LLLLTCLR-VGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSD---EAVACRM-ATNEIQFFD 76 (434)
Q Consensus 2 V~~l~fSP-~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d---~~~la~~-~~~~i~v~~ 76 (434)
|.+++|+| ++++|++++ .|+.|+|||+.+++.+..+... ..+.++.|+++ +.+++++ .++.|++||
T Consensus 102 v~~~~~~~~~~~~l~s~~-----~d~~i~iwd~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d 172 (408)
T 4a11_B 102 VETVQWYPHDTGMFTSSS-----FDKTLKVWDTNTLQTADVFNFE----ETVYSHHMSPVSTKHCLVAVGTRGPKVQLCD 172 (408)
T ss_dssp EEEEEECTTCTTCEEEEE-----TTSEEEEEETTTTEEEEEEECS----SCEEEEEECSSCSSCCEEEEEESSSSEEEEE
T ss_pred EEEEEEccCCCcEEEEEe-----CCCeEEEeeCCCCccceeccCC----CceeeeEeecCCCCCcEEEEEcCCCeEEEEe
Confidence 78999999 788999998 8999999999999988877643 44558888884 4478777 567999999
Q ss_pred CCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeee---------------eecc
Q 013871 77 TTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARR---------------SFFR 141 (434)
Q Consensus 77 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~---------------~~~~ 141 (434)
+...........+...|.+++|+|++...+++ .+.++.|++|++... ...+... ..+.
T Consensus 173 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~-----~~~dg~i~i~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (408)
T 4a11_B 173 LKSGSCSHILQGHRQEILAVSWSPRYDYILAT-----ASADSRVKLWDVRRA--SGCLITLDQHNGKKSQAVESANTAHN 245 (408)
T ss_dssp SSSSCCCEEECCCCSCEEEEEECSSCTTEEEE-----EETTSCEEEEETTCS--SCCSEECCTTTTCSCCCTTTSSCSCS
T ss_pred CCCcceeeeecCCCCcEEEEEECCCCCcEEEE-----EcCCCcEEEEECCCC--Ccccccccccccccceeecccccccc
Confidence 98766544455566789999999996555554 245678999999763 1222222 4566
Q ss_pred cceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecC------CCCCeEEEEECcCCCEEEEEEc
Q 013871 142 CSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR------KEGPVHDVQWSYSGSEFAVVYG 215 (434)
Q Consensus 142 ~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~------~~~~i~~v~wspdg~~~av~~g 215 (434)
..+..+.|+|+|+.|+... .|.. +..+++........... .......+... .+..+++ +
T Consensus 246 ~~v~~~~~~~~~~~l~~~~---~dg~---------i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~ 310 (408)
T 4a11_B 246 GKVNGLCFTSDGLHLLTVG---TDNR---------MRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCG-CSSEFVF--V 310 (408)
T ss_dssp SCEEEEEECTTSSEEEEEE---TTSC---------EEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCS-SSSCEEE--E
T ss_pred CceeEEEEcCCCCEEEEec---CCCe---------EEEEECCCCccceeccccccccccccceeEEecC-CCceEEE--E
Confidence 7788999999999876542 3333 33333332211111000 01111222222 3344443 3
Q ss_pred cCCCeEEEEecc-cceeEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceEEEECCCCC
Q 013871 216 FMPASATIFNKK-CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGR 292 (434)
Q Consensus 216 ~~~~~v~l~d~~-~~~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~~~wspdg~ 292 (434)
..++.+.+||+. ...+..+ |...+++++|+|+|++|++++ .+|.|++||+++++.+........ ...++|...
T Consensus 311 ~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~---~dg~i~iw~~~~~~~~~~~~~~~~-~~~~~~~~~ 386 (408)
T 4a11_B 311 PYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGS---RDCNILAWVPSLYEPVPDDDETTT-KSQLNPAFE 386 (408)
T ss_dssp EETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEE---TTSCEEEEEECC----------------------
T ss_pred ecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEEC---CCCeEEEEeCCCCCccCCCCceEe-ccccccccc
Confidence 457899999986 4555555 678999999999999999999 567999999999987765544322 234444333
Q ss_pred E-EEEEEcCCceeeCCcEEEEeec
Q 013871 293 Y-FMTATTAPRLQIDNGIKIFHHN 315 (434)
Q Consensus 293 ~-l~tas~~prl~~D~~i~iw~~~ 315 (434)
. +.++.. |+.++||+..
T Consensus 387 ~~~~~~~~------~~~~~~W~~~ 404 (408)
T 4a11_B 387 DAWSSSDE------EGGTSAWSHP 404 (408)
T ss_dssp ------------------------
T ss_pred eeecccCc------cCceeecCCc
Confidence 3 334444 8999999853
No 123
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.89 E-value=4.2e-21 Score=201.82 Aligned_cols=287 Identities=10% Similarity=0.037 Sum_probs=182.0
Q ss_pred cceEEecCCCcEEEEEecCCC----CCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeC
Q 013871 2 LLLLTCLRVGLIIQTFQKSST----PQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDT 77 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~----~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~ 77 (434)
|.+++|||||++|++...... ..++.|.|||+.+++. ..+.....+...+..++|||||++||++.+++|++|+.
T Consensus 63 v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~ 141 (723)
T 1xfd_A 63 AIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAH 141 (723)
T ss_dssp CSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESS
T ss_pred cceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEECCeEEEEEC
Confidence 678999999999999874322 1247899999999876 44433322223356899999999999999899999998
Q ss_pred CCCCCceeeeeecCC------------------eeEEEEeCCCCCeEEEEecCC--------------------------
Q 013871 78 TDFPKGILYRLRVPG------------------VAAFEVSKAPGSHVAVFVPES-------------------------- 113 (434)
Q Consensus 78 ~~~~~~~~~~~~~~~------------------v~~~~~sp~~~~~ia~~~~~~-------------------------- 113 (434)
............... +..+.|||+ +..|++...+.
T Consensus 142 ~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpD-g~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (723)
T 1xfd_A 142 VGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPD-GTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPK 220 (723)
T ss_dssp SSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTT-SSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCB
T ss_pred CCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCC-CCEEEEEEECCCccceEEeeccCCcCCCcceeccCCC
Confidence 774432221221222 378999999 55665543221
Q ss_pred ---CCCCceEEEEEcCCCCCCCceeeeeec------ccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCC
Q 013871 114 ---KGSPASVQIYACGKDLQSQPLARRSFF------RCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDG 184 (434)
Q Consensus 114 ---~~~~~~v~i~~~~~~~~~~~i~~~~~~------~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~ 184 (434)
......|.+|++.+ +......... ......+.|+|||+.|++..... . ....|+.+++.+
T Consensus 221 ~G~~~~~~~l~~~d~~~---~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~---~-----~~~~i~~~d~~~ 289 (723)
T 1xfd_A 221 AGSENPSISLHVIGLNG---PTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRA---Q-----NVSILTLCDATT 289 (723)
T ss_dssp TTSCCCEEEEEEEESSS---SCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETT---S-----CEEEEEEEETTT
T ss_pred CCCCCCeeEEEEEECCC---CceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCC---C-----CeEEEEEEeCCC
Confidence 01123788999876 4433333322 34567899999999664432211 0 123467777655
Q ss_pred cceeeee-cCCCCCe----EEEEECcCCCEEEEEEccCCC------eEEEEe-cccce---eEEeC--CcCeeE-EEECC
Q 013871 185 THEGLVP-LRKEGPV----HDVQWSYSGSEFAVVYGFMPA------SATIFN-KKCRP---ILELG--SGPYNT-VRWNP 246 (434)
Q Consensus 185 ~~~~~v~-l~~~~~i----~~v~wspdg~~~av~~g~~~~------~v~l~d-~~~~~---~~~~~--~~~~~~-i~~SP 246 (434)
.....+. ....+.+ ..++|||||+.|+++++..++ .+.+|| ..+.. ...+. ...+.. ++|||
T Consensus 290 g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~sp 369 (723)
T 1xfd_A 290 GVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDE 369 (723)
T ss_dssp CCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEET
T ss_pred CcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcC
Confidence 4322221 1123333 378999999999886455555 677788 44444 44442 333444 69999
Q ss_pred CCCeEEEEecCCCCCeEEEEEccCC--EEEEEee-----CCCceEEEECCCCCEEEEEEcCC
Q 013871 247 KGKFLCLAGFGNLPGDMAFWDYVDG--KQLGTTR-----AECSVTSEWSPDGRYFMTATTAP 301 (434)
Q Consensus 247 ~g~~l~~~~~~~~~g~i~iwd~~~~--~~i~~~~-----~~~~~~~~wspdg~~l~tas~~p 301 (434)
||+.|+..+.+...+.+.||+++.. .....+. ...+..++|||||++|+.....+
T Consensus 370 dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 431 (723)
T 1xfd_A 370 KGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGP 431 (723)
T ss_dssp TTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSS
T ss_pred CCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEccCC
Confidence 9999987764422368889987532 2222232 22456799999999999877643
No 124
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.89 E-value=5.6e-21 Score=194.30 Aligned_cols=302 Identities=13% Similarity=0.116 Sum_probs=207.0
Q ss_pred EecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeC--CCCCC
Q 013871 6 TCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDT--TDFPK 82 (434)
Q Consensus 6 ~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~--~~~~~ 82 (434)
.|||+|.++++.+ .|+.|.+||..+++++.++.... . +..++|||||++|+++. ++.|.+||+ .+..
T Consensus 144 ~~~p~~~~~vs~~-----~d~~V~v~D~~t~~~~~~i~~g~---~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~- 213 (543)
T 1nir_A 144 DLDLPNLFSVTLR-----DAGQIALVDGDSKKIVKVIDTGY---A-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPT- 213 (543)
T ss_dssp CCCGGGEEEEEEG-----GGTEEEEEETTTCCEEEEEECST---T-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCE-
T ss_pred ccCCCCEEEEEEc-----CCCeEEEEECCCceEEEEEecCc---c-cceEEECCCCCEEEEECCCCeEEEEECcCCCCc-
Confidence 4899999888877 78999999999999998887432 2 44789999999998874 689999999 4432
Q ss_pred ceeeeee-cCCeeEEEEeC----CCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeec----------cc-ceeE
Q 013871 83 GILYRLR-VPGVAAFEVSK----APGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFF----------RC-STVQ 146 (434)
Q Consensus 83 ~~~~~~~-~~~v~~~~~sp----~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~----------~~-~~~~ 146 (434)
....+. ...+..++||| + +.++.+.. ..++.|.+|+..+ .+++...... .. ....
T Consensus 214 -~~~~i~~g~~p~~va~sp~~~~d-g~~l~v~~----~~~~~v~v~D~~t---~~~~~~i~~~g~~~~~~~~~~~~~v~~ 284 (543)
T 1nir_A 214 -KVAEIKIGIEARSVESSKFKGYE-DRYTIAGA----YWPPQFAIMDGET---LEPKQIVSTRGMTVDTQTYHPEPRVAA 284 (543)
T ss_dssp -EEEEEECCSEEEEEEECCSTTCT-TTEEEEEE----EESSEEEEEETTT---CCEEEEEECCEECSSSCCEESCCCEEE
T ss_pred -EEEEEecCCCcceEEeCCCcCCC-CCEEEEEE----ccCCeEEEEeccc---cccceeecccCcccCccccccCCceEE
Confidence 223333 34578999999 8 44443321 2356899999877 5666655432 12 4567
Q ss_pred EEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcce-eeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEe
Q 013871 147 LNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHE-GLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFN 225 (434)
Q Consensus 147 ~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~-~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d 225 (434)
+.+++++..+++... . ...|+.++...... ....+.....+++++|+|||++|++ ++..+++|.+||
T Consensus 285 i~~s~~~~~~~vs~~----~-------~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~v-a~~~~~~v~v~D 352 (543)
T 1nir_A 285 IIASHEHPEFIVNVK----E-------TGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMT-AANNSNKVAVID 352 (543)
T ss_dssp EEECSSSSEEEEEET----T-------TTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEE-EEGGGTEEEEEE
T ss_pred EEECCCCCEEEEEEC----C-------CCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEE-EecCCCeEEEEE
Confidence 899999988765421 1 11355555433211 1112233456889999999998876 455678999999
Q ss_pred ccccee-EEeC------CcCeeEEEECCC-CCeEEEEecCCCCCeEEEEEccC-------CEEEEEeeCC--CceEEEEC
Q 013871 226 KKCRPI-LELG------SGPYNTVRWNPK-GKFLCLAGFGNLPGDMAFWDYVD-------GKQLGTTRAE--CSVTSEWS 288 (434)
Q Consensus 226 ~~~~~~-~~~~------~~~~~~i~~SP~-g~~l~~~~~~~~~g~i~iwd~~~-------~~~i~~~~~~--~~~~~~ws 288 (434)
++...+ ..+. .+.... .++|+ |.+++++..+ +++|.|||+.+ ++++.++..+ .+..+.++
T Consensus 353 ~~tg~l~~~i~~g~~ph~g~g~~-~~~p~~g~~~~s~~~~--d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~ 429 (543)
T 1nir_A 353 SKDRRLSALVDVGKTPHPGRGAN-FVHPKYGPVWSTSHLG--DGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTH 429 (543)
T ss_dssp TTTTEEEEEEECSSSBCCTTCEE-EEETTTEEEEEEEBSS--SSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECC
T ss_pred CCCCeEEEeeccCCCCCCCCCcc-cCCCCCccEEEeccCC--CceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcC
Confidence 975443 3332 111222 25787 5555555433 36999999998 8899999876 45569999
Q ss_pred CCCCEEEEEEc-CCceeeCCcEEEEeec-Cceeeee-----------ecccceeeEEEcCCCCCCC
Q 013871 289 PDGRYFMTATT-APRLQIDNGIKIFHHN-GSLFFKK-----------MFDKLFQAEWKPVSPDKFG 341 (434)
Q Consensus 289 pdg~~l~tas~-~prl~~D~~i~iw~~~-g~~~~~~-----------~~~~~~~~~w~p~~~~~~~ 341 (434)
|||++|++++. .|....+++|.|||.. ++..++. .-..+.++.|+|++..++.
T Consensus 430 pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~ 495 (543)
T 1nir_A 430 PKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWF 495 (543)
T ss_dssp TTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEE
T ss_pred CCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEE
Confidence 99999999872 3332237899999995 5544332 1346889999999998884
No 125
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.89 E-value=1.1e-19 Score=173.45 Aligned_cols=272 Identities=11% Similarity=0.005 Sum_probs=187.6
Q ss_pred cceEEecCCCcEEEEEecCCC--CCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe--cCCeEEEEeC
Q 013871 2 LLLLTCLRVGLIIQTFQKSST--PQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM--ATNEIQFFDT 77 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~--~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~--~~~~i~v~~~ 77 (434)
+..++|||+|++|++.+.... ..++.|.+||+.+++.+..+.... ....+.|++|+++++.. .++.|.+||.
T Consensus 43 ~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~----~~~~~~~s~dg~~l~v~~~~~~~v~~~d~ 118 (353)
T 3vgz_A 43 AYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDL----KPFGATINNTTQTLWFGNTVNSAVTAIDA 118 (353)
T ss_dssp EEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESS----CCCSEEEETTTTEEEEEETTTTEEEEEET
T ss_pred ccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCC----CcceEEECCCCCEEEEEecCCCEEEEEeC
Confidence 457899999999988773211 125789999999999988887642 23478999999966554 3479999999
Q ss_pred CCCCCceeeeeecC---------CeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEE
Q 013871 78 TDFPKGILYRLRVP---------GVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLN 148 (434)
Q Consensus 78 ~~~~~~~~~~~~~~---------~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ 148 (434)
.+............ .+..+.|+|+++ .+.+... +..+.|.+|++.+ .+.+............+.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-~l~~~~~---~~~~~i~~~d~~~---~~~~~~~~~~~~~~~~~~ 191 (353)
T 3vgz_A 119 KTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATN-TVYISGI---GKESVIWVVDGGN---IKLKTAIQNTGKMSTGLA 191 (353)
T ss_dssp TTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTT-EEEEEEE---SSSCEEEEEETTT---TEEEEEECCCCTTCCCCE
T ss_pred CCCeeEEEEecCCCccccccCCCCCceEEECCCCC-EEEEEec---CCCceEEEEcCCC---CceEEEecCCCCccceEE
Confidence 87543222222111 267899999854 3333221 2356899999977 566655554455567889
Q ss_pred ECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcce-eeeecC---CCCCeEEEEECcCCCEEEEEEccCCCeEEEE
Q 013871 149 WNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHE-GLVPLR---KEGPVHDVQWSYSGSEFAVVYGFMPASATIF 224 (434)
Q Consensus 149 ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~-~~v~l~---~~~~i~~v~wspdg~~~av~~g~~~~~v~l~ 224 (434)
|+|+|+.+++.. .+ ..++.++...... ..+... ....+..++|+|+|+.+++. ...++.+.+|
T Consensus 192 ~s~dg~~l~~~~---~~---------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~-~~~~~~v~~~ 258 (353)
T 3vgz_A 192 LDSEGKRLYTTN---AD---------GELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFIT-DSKAAEVLVV 258 (353)
T ss_dssp EETTTTEEEEEC---TT---------SEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEE-ESSSSEEEEE
T ss_pred ECCCCCEEEEEc---CC---------CeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEE-eCCCCEEEEE
Confidence 999999876642 11 1345555444322 222331 24457789999999988764 5556899999
Q ss_pred eccc-ceeEEeCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC-CceEEEECCCCCEEEEEEc
Q 013871 225 NKKC-RPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-CSVTSEWSPDGRYFMTATT 299 (434)
Q Consensus 225 d~~~-~~~~~~~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-~~~~~~wspdg~~l~tas~ 299 (434)
|.+. ..+..+.......+.|+|+|+++++++.+ ++.|.+||..+++.+..+... .+..++|+|||++|+++..
T Consensus 259 d~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~ 333 (353)
T 3vgz_A 259 DTRNGNILAKVAAPESLAVLFNPARNEAYVTHRQ--AGKVSVIDAKSYKVVKTFDTPTHPNSLALSADGKTLYVSVK 333 (353)
T ss_dssp ETTTCCEEEEEECSSCCCEEEETTTTEEEEEETT--TTEEEEEETTTTEEEEEEECCSEEEEEEECTTSCEEEEEEE
T ss_pred ECCCCcEEEEEEcCCCceEEECCCCCEEEEEECC--CCeEEEEECCCCeEEEEEecCCCCCeEEEcCCCCEEEEEEc
Confidence 9964 44444433334679999999987777643 379999999999988887765 4556999999998888776
No 126
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.89 E-value=3.3e-20 Score=188.66 Aligned_cols=292 Identities=12% Similarity=0.073 Sum_probs=193.0
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEc--CCCcEEEEEeecCcCCCCCCeeeecC----CCcEEEEec--CCeEE
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKT--ETGEAVYQLFQKNMTKTTWPSIRFSS----DEAVACRMA--TNEIQ 73 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~--~~g~~~~~~~~~~~~~~~~~~~~~S~----d~~~la~~~--~~~i~ 73 (434)
+.+++|||||++|++.+ .|+.|.+||+ .+++++.++... .....++||| ||++++++. +++|.
T Consensus 181 ~~~v~~spdg~~l~v~~-----~d~~V~v~D~~~~t~~~~~~i~~g----~~p~~va~sp~~~~dg~~l~v~~~~~~~v~ 251 (543)
T 1nir_A 181 VHISRMSASGRYLLVIG-----RDARIDMIDLWAKEPTKVAEIKIG----IEARSVESSKFKGYEDRYTIAGAYWPPQFA 251 (543)
T ss_dssp EEEEEECTTSCEEEEEE-----TTSEEEEEETTSSSCEEEEEEECC----SEEEEEEECCSTTCTTTEEEEEEEESSEEE
T ss_pred cceEEECCCCCEEEEEC-----CCCeEEEEECcCCCCcEEEEEecC----CCcceEEeCCCcCCCCCEEEEEEccCCeEE
Confidence 46789999999999998 6799999999 899988887653 3344899999 999998874 68999
Q ss_pred EEeCCCCCCceeeee----------ec-CCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCcee--eeeec
Q 013871 74 FFDTTDFPKGILYRL----------RV-PGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLA--RRSFF 140 (434)
Q Consensus 74 v~~~~~~~~~~~~~~----------~~-~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~--~~~~~ 140 (434)
+||..+......... +. ..+..+.+||++...++. . ...+.|.+|++.. ...+. ... .
T Consensus 252 v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs-~----~~~g~i~vvd~~~---~~~l~~~~i~-~ 322 (543)
T 1nir_A 252 IMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVN-V----KETGKVLLVNYKD---IDNLTVTSIG-A 322 (543)
T ss_dssp EEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEE-E----TTTTEEEEEECTT---SSSCEEEEEE-C
T ss_pred EEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEE-E----CCCCeEEEEEecC---CCcceeEEec-c
Confidence 999877654322222 11 257889999985443332 1 3457899999976 33322 222 2
Q ss_pred ccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcc-eeeeecC---CCCCeEEEEECcCCCEEEEEEcc
Q 013871 141 RCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH-EGLVPLR---KEGPVHDVQWSYSGSEFAVVYGF 216 (434)
Q Consensus 141 ~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~-~~~v~l~---~~~~i~~v~wspdg~~~av~~g~ 216 (434)
......+.|+|+|+++++... .+. .+..++..... ...+... +.+....+ ++|++..+.+....
T Consensus 323 ~~~~~~~~~spdg~~l~va~~--~~~---------~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~ 390 (543)
T 1nir_A 323 APFLHDGGWDSSHRYFMTAAN--NSN---------KVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHL 390 (543)
T ss_dssp CSSCCCEEECTTSCEEEEEEG--GGT---------EEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBS
T ss_pred CcCccCceECCCCCEEEEEec--CCC---------eEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccC
Confidence 334557899999998865432 122 23444443331 1122221 22223333 47885555543233
Q ss_pred CCCeEEEEeccc--------ceeEEe--CCcCeeEEEECCCCCeEEEEecCCC----CCeEEEEEccCCEEE-EEe----
Q 013871 217 MPASATIFNKKC--------RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNL----PGDMAFWDYVDGKQL-GTT---- 277 (434)
Q Consensus 217 ~~~~v~l~d~~~--------~~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~----~g~i~iwd~~~~~~i-~~~---- 277 (434)
.+++|.+||+.. +.+..+ +.+....+.+||+|++|.++...+. ++.|.|||+++++.. ..+
T Consensus 391 ~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~ 470 (543)
T 1nir_A 391 GDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAE 470 (543)
T ss_dssp SSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHH
T ss_pred CCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechh
Confidence 578999999854 445555 4566788999999999998863221 469999999988655 332
Q ss_pred -----e-CCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceeeeeec
Q 013871 278 -----R-AECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKKMF 324 (434)
Q Consensus 278 -----~-~~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~-~g~~~~~~~~ 324 (434)
. ...+..++|+|||++++++.-.- ..-|+.|.|||. +++++.....
T Consensus 471 ~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~-~~~~~~i~v~D~~t~~~~~~i~~ 523 (543)
T 1nir_A 471 WADLGEGAKRVVQPEYNKRGDEVWFSVWNG-KNDSSALVVVDDKTLKLKAVVKD 523 (543)
T ss_dssp HHCCCSSCCEEEEEEECSSSSEEEEEEECC-TTSCCEEEEEETTTTEEEEEECC
T ss_pred hcccCCCCCceEeccCCCCCCEEEEEeecC-CCCCCeEEEEECCCceEEEeecC
Confidence 1 23667799999999999874210 001799999998 4566555443
No 127
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.88 E-value=6.1e-21 Score=201.24 Aligned_cols=291 Identities=10% Similarity=0.046 Sum_probs=183.1
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCc--EEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCC
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGE--AVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTD 79 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~--~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~ 79 (434)
|.+++|||||++|++.+ . +.|++||+.++. .+..+.... ..+..++|||||++|+++.+++|.+|++..
T Consensus 111 v~~~~~SpDg~~l~~~~-----~-~~i~~~d~~~~~~~~~~~l~~~~---~~~~~~~~SPDG~~la~~~~~~i~~~d~~~ 181 (741)
T 2ecf_A 111 IVDYQWSPDAQRLLFPL-----G-GELYLYDLKQEGKAAVRQLTHGE---GFATDAKLSPKGGFVSFIRGRNLWVIDLAS 181 (741)
T ss_dssp SCCCEECTTSSEEEEEE-----T-TEEEEEESSSCSTTSCCBCCCSS---SCEEEEEECTTSSEEEEEETTEEEEEETTT
T ss_pred cceeEECCCCCEEEEEe-----C-CcEEEEECCCCCcceEEEcccCC---cccccccCCCCCCEEEEEeCCcEEEEecCC
Confidence 57899999999999988 2 889999999882 233443322 445589999999999999989999999876
Q ss_pred CCCceeeeeecC----------------CeeEEEEeCCCCCeEEEEecCCC--------------------------CCC
Q 013871 80 FPKGILYRLRVP----------------GVAAFEVSKAPGSHVAVFVPESK--------------------------GSP 117 (434)
Q Consensus 80 ~~~~~~~~~~~~----------------~v~~~~~sp~~~~~ia~~~~~~~--------------------------~~~ 117 (434)
............ .+..+.|||++ ..|++...+.. ...
T Consensus 182 g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg-~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~ 260 (741)
T 2ecf_A 182 GRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDD-SAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDAN 260 (741)
T ss_dssp TEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTS-SCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCC
T ss_pred CCEEEeccCCccceeccccceeeeeccccccceEECCCC-CEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCC
Confidence 322111111111 14779999994 55554432211 111
Q ss_pred c--eEEEEEcCC-CCCCCceeeee---ecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeee
Q 013871 118 A--SVQIYACGK-DLQSQPLARRS---FFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVP 191 (434)
Q Consensus 118 ~--~v~i~~~~~-~~~~~~i~~~~---~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~ 191 (434)
. .|.+|++.+ . ...... .+......+.| |||+.|++....... ....|+.++..+.....+.
T Consensus 261 ~~~~l~~~d~~~~~----~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~-------~~~~i~~~d~~~g~~~~~~ 328 (741)
T 2ecf_A 261 VQVKLGVISPAEQA----QTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQ-------KKLDLVEVTLASNQQRVLA 328 (741)
T ss_dssp CEEEEEEECSSTTC----CCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTS-------SEEEEEEEETTTCCEEEEE
T ss_pred CeeEEEEEECCCCC----ceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccC-------CeEEEEEEECCCCceEEEE
Confidence 2 566667654 2 222222 23455678999 999998876532111 1235777776654322222
Q ss_pred cCC-CC---CeEEEEECcCCCEEEEEEccCCCeEEE--EecccceeEEe--CCcCeeEE-EECCCCCeEEEEecCCCCCe
Q 013871 192 LRK-EG---PVHDVQWSYSGSEFAVVYGFMPASATI--FNKKCRPILEL--GSGPYNTV-RWNPKGKFLCLAGFGNLPGD 262 (434)
Q Consensus 192 l~~-~~---~i~~v~wspdg~~~av~~g~~~~~v~l--~d~~~~~~~~~--~~~~~~~i-~~SP~g~~l~~~~~~~~~g~ 262 (434)
-.. .+ .+.+++|+|||+.++ ++..++.+.| +|..+. ...+ +...+..+ .|||+|+.|++.+.++..+.
T Consensus 329 ~~~~~~~~~~~~~~~~spdg~~~~--~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~ 405 (741)
T 2ecf_A 329 HETSPTWVPLHNSLRFLDDGSILW--SSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARE 405 (741)
T ss_dssp EEECSSCCCCCSCCEECTTSCEEE--EECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTC
T ss_pred EcCCCCcCCcCCceEECCCCeEEE--EecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCce
Confidence 111 12 456899999999444 3455665555 455555 5555 45566676 59999998877664433338
Q ss_pred EEEEEccC-CEEEEEeeC-CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCcee
Q 013871 263 MAFWDYVD-GKQLGTTRA-ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLF 319 (434)
Q Consensus 263 i~iwd~~~-~~~i~~~~~-~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~~ 319 (434)
+.||++.. +..+..+.. ..+..++|||||++|+.....+.. -..+.+|+..|+.+
T Consensus 406 ~~l~~~~~~g~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~--p~~~~l~~~~~~~~ 462 (741)
T 2ecf_A 406 SQIYAVPLQGGQPQRLSKAPGMHSASFARNASVYVDSWSNNST--PPQIELFRANGEKI 462 (741)
T ss_dssp BEEEEEETTCCCCEECCCSCSEEEEEECTTSSEEEEEEEETTE--EEEEEEEETTSCEE
T ss_pred EEEEEEEcCCCCeeecccCCCceEEEECCCCCEEEEEecCCCC--CCeEEEEEcCCCeE
Confidence 88998763 443344433 355569999999999988763221 24688888877643
No 128
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.88 E-value=1.5e-20 Score=176.25 Aligned_cols=227 Identities=15% Similarity=0.219 Sum_probs=164.1
Q ss_pred eecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCC--CCeEEEEEEeccc
Q 013871 88 LRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRG--STGLLAVAQSDVD 165 (434)
Q Consensus 88 ~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~--G~~l~~~~~~~~d 165 (434)
.|...|.+++|+|+ +..++. ++.++.|+||++.... ...+..+..|...+..+.|+++ |+.|+. ...|
T Consensus 7 ~h~~~V~~~~~s~~-g~~las-----~s~D~~v~iw~~~~~~-~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s---~s~D 76 (297)
T 2pm7_B 7 AHNEMIHDAVMDYY-GKRMAT-----CSSDKTIKIFEVEGET-HKLIDTLTGHEGPVWRVDWAHPKFGTILAS---CSYD 76 (297)
T ss_dssp SCSSCEEEEEECTT-SSEEEE-----EETTSCEEEEEBCSSC-BCCCEEECCCSSCEEEEEECCGGGCSEEEE---EETT
T ss_pred CCcCceEEEEECCC-CCEEEE-----EeCCCEEEEEecCCCC-cEEEEEEccccCCeEEEEecCCCcCCEEEE---EcCC
Confidence 45567999999999 556654 3566899999997521 3567778889999999999864 776433 2345
Q ss_pred ccCceeecceeEEEEeeCCcceeeeec-CCCCCeEEEEECcC--CCEEEEEEccCCCeEEEEecccc-----eeEEeCCc
Q 013871 166 KTNQSYYGESKLNYLTTDGTHEGLVPL-RKEGPVHDVQWSYS--GSEFAVVYGFMPASATIFNKKCR-----PILELGSG 237 (434)
Q Consensus 166 ~~~~~~~g~~~l~~l~~~~~~~~~v~l-~~~~~i~~v~wspd--g~~~av~~g~~~~~v~l~d~~~~-----~~~~~~~~ 237 (434)
.+.+. |.+.. +.......+ .+...|.+++|+|+ |..|+ ++..|+.|++||++.. ....-|..
T Consensus 77 ~~v~i-------Wd~~~-~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~--s~s~d~~v~~wd~~~~~~~~~~~~~~h~~ 146 (297)
T 2pm7_B 77 GKVMI-------WKEEN-GRWSQIAVHAVHSASVNSVQWAPHEYGPMLL--VASSDGKVSVVEFKENGTTSPIIIDAHAI 146 (297)
T ss_dssp TEEEE-------EEBSS-SCBCCCEEECCCSSCEEEEEECCGGGCSEEE--EEETTSEEEEEEBCSSSCBCCEEEECCSS
T ss_pred CEEEE-------EEcCC-CceEEEEEeecCCCceeEEEeCcCCCCcEEE--EEECCCcEEEEEecCCCceeeeeeecccC
Confidence 55543 33321 111111222 25789999999998 77777 5778999999998643 12234788
Q ss_pred CeeEEEECCC-------------CCeEEEEecCCCCCeEEEEEccCCE----EEEEeeCC--CceEEEECCCC---CEEE
Q 013871 238 PYNTVRWNPK-------------GKFLCLAGFGNLPGDMAFWDYVDGK----QLGTTRAE--CSVTSEWSPDG---RYFM 295 (434)
Q Consensus 238 ~~~~i~~SP~-------------g~~l~~~~~~~~~g~i~iwd~~~~~----~i~~~~~~--~~~~~~wspdg---~~l~ 295 (434)
.+++++|+|+ +++|++++ .+|.|+|||+++++ .+..+.+| .+..++|+|++ .+|+
T Consensus 147 ~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs---~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~la 223 (297)
T 2pm7_B 147 GVNSASWAPATIEEDGEHNGTKESRKFVTGG---ADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMA 223 (297)
T ss_dssp CEEEEEECCCC------------CCEEEEEE---TTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEE
T ss_pred ccceEeecCCcccccccCCCCCCcceEEEEc---CCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEE
Confidence 9999999997 57999998 56799999998764 56677766 56679999995 8999
Q ss_pred EEEcCCceeeCCcEEEEeecCc------eee--eeecccceeeEEEcCCCCCCCCc
Q 013871 296 TATTAPRLQIDNGIKIFHHNGS------LFF--KKMFDKLFQAEWKPVSPDKFGDI 343 (434)
Q Consensus 296 tas~~prl~~D~~i~iw~~~g~------~~~--~~~~~~~~~~~w~p~~~~~~~~~ 343 (434)
+++. |+.|+||++... .+. ..+...++.++|+|++..|....
T Consensus 224 s~s~------D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~ 273 (297)
T 2pm7_B 224 SVSQ------DRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSG 273 (297)
T ss_dssp EEET------TSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEE
T ss_pred EEEC------CCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEc
Confidence 9999 999999999652 111 12345689999999998877653
No 129
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.88 E-value=3.5e-20 Score=173.82 Aligned_cols=258 Identities=15% Similarity=0.122 Sum_probs=157.6
Q ss_pred CCcEEEEEcCCC---cEEEEEeecCcCCCCCCeeeecCCCcEEEEe--cC---CeEEEEeCCCC----CCceeeeeecCC
Q 013871 25 EKNVILWKTETG---EAVYQLFQKNMTKTTWPSIRFSSDEAVACRM--AT---NEIQFFDTTDF----PKGILYRLRVPG 92 (434)
Q Consensus 25 d~~v~iWd~~~g---~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~--~~---~~i~v~~~~~~----~~~~~~~~~~~~ 92 (434)
+..|++|++.++ ++++++..+. ..|..+.|+||..-|++. ++ +.|+..-.... ........+...
T Consensus 62 ~~~v~lw~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~~~ 138 (356)
T 2w18_A 62 EDVVSLWKALDAWQWEKLYTWHFAE---VPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKSGNIKA 138 (356)
T ss_dssp SSEEEEEEESSSSBEEEEEEEECCS---SCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEEEEEEEE
T ss_pred cceEEEcccCCCccceeeEEEeccC---ceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEeCCCeEE
Confidence 578999999999 8899987764 456688889977544333 22 12222211111 100011111111
Q ss_pred eeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECC---CCCeEEEEEEecccccCc
Q 013871 93 VAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNR---GSTGLLAVAQSDVDKTNQ 169 (434)
Q Consensus 93 v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~---~G~~l~~~~~~~~d~~~~ 169 (434)
|.+ + ++ +..+... ..+..+.|++|++... ++.+.....+...+..+.|++ +|..| ++...|++.+
T Consensus 139 v~~--l-~~-g~lv~ss---~~g~d~~V~~~~~s~d--G~~~~s~~~~~~~v~~l~fs~~~g~~~~L---aSgS~D~TIk 206 (356)
T 2w18_A 139 VLG--L-TK-RRLVSSS---GTLSDQQVEVMTFAED--GGGKENQFLMPPEETILTFAEVQGMQEAL---LGTTIMNNIV 206 (356)
T ss_dssp EEE--E-TT-TEEEEEE---SSSTTCEEEEEEECTT--SCEEEEEEECCCSSCEEEEEEEETSTTEE---EEEETTSEEE
T ss_pred EEe--c-CC-CcEEEec---ccCCCCcEEEEEECCC--CceeeeeccCCCceeeEEeeccCCCCceE---EEecCCCcEE
Confidence 222 2 22 3333321 1346789999999332 677788888888888889998 55653 3344677777
Q ss_pred eeeccee--EEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEE----------EEccCCCeEEEEeccccee-EEe--
Q 013871 170 SYYGESK--LNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAV----------VYGFMPASATIFNKKCRPI-LEL-- 234 (434)
Q Consensus 170 ~~~g~~~--l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av----------~~g~~~~~v~l~d~~~~~~-~~~-- 234 (434)
.|.-.+. ++.+. +.+ .....+..++|+|+|..+++ ++|..|+++++||.+.... ..+
T Consensus 207 IWDl~TGk~l~tL~--g~~------~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~ 278 (356)
T 2w18_A 207 IWNLKTGQLLKKMH--IDD------SYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLY 278 (356)
T ss_dssp EEETTTCCEEEEEE--CCC---------CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEE
T ss_pred EEECCCCcEEEEEc--CCC------cceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEe
Confidence 5543221 12221 100 01236778899999988753 4678889999999875443 221
Q ss_pred --CCcC-eeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--Cce-EEEECCCCCEEEEEEcCCceeeCCc
Q 013871 235 --GSGP-YNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSV-TSEWSPDGRYFMTATTAPRLQIDNG 308 (434)
Q Consensus 235 --~~~~-~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~-~~~wspdg~~l~tas~~prl~~D~~ 308 (434)
..+. ...+..+.+|.++++++ .||+|+|||+.+++++.++.+| .+. .++|||||++|++|+. |++
T Consensus 279 ~~p~Gh~~~~lsg~~sg~~lASgS---~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~------D~T 349 (356)
T 2w18_A 279 CLPPGQAGRFLEGDVKDHCAAAIL---TSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQK------DGN 349 (356)
T ss_dssp CCCTTCCCCEEEEEEETTEEEEEE---TTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECT------TSC
T ss_pred eccCCCcceeEccccCCCEEEEEc---CCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEEC------CCc
Confidence 1111 11222222366788887 5679999999999999999876 344 4899999999999999 999
Q ss_pred EEEEee
Q 013871 309 IKIFHH 314 (434)
Q Consensus 309 i~iw~~ 314 (434)
|||||+
T Consensus 350 IklWd~ 355 (356)
T 2w18_A 350 IFVYHY 355 (356)
T ss_dssp EEEEEE
T ss_pred EEEecC
Confidence 999996
No 130
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.87 E-value=4e-19 Score=168.66 Aligned_cols=294 Identities=11% Similarity=0.041 Sum_probs=181.9
Q ss_pred CCcEEEEEecCCCCCCCcEEEEEcC-CCc--EEEEEeecCcCCCCCCeeeecCCCcEEEEecC--CeEEEEeCC--CCCC
Q 013871 10 VGLIIQTFQKSSTPQEKNVILWKTE-TGE--AVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT--NEIQFFDTT--DFPK 82 (434)
Q Consensus 10 ~g~~L~t~~~~~~~~d~~v~iWd~~-~g~--~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~--~~i~v~~~~--~~~~ 82 (434)
.+++|++.. ..|+.|.+||+. +++ .+..+... ..+..++|+||+++|+.+.. +.|.+|++. ....
T Consensus 3 ~~~~l~~~~----~~~~~v~~~~~~~~~~~~~~~~~~~~----~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~ 74 (343)
T 1ri6_A 3 LKQTVYIAS----PESQQIHVWNLNHEGALTLTQVVDVP----GQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGAL 74 (343)
T ss_dssp CEEEEEEEE----GGGTEEEEEEECTTSCEEEEEEEECS----SCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCE
T ss_pred ceEEEEEeC----CCCCeEEEEEECCCCcEEEeeeEecC----CCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCce
Confidence 345555543 157899999995 453 33333322 45558999999998877743 799999987 3222
Q ss_pred ceeeeee-cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEE
Q 013871 83 GILYRLR-VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQ 161 (434)
Q Consensus 83 ~~~~~~~-~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~ 161 (434)
.....+. ...+..++|+|++ ..+.+.. ...+.|.+|++........+.... .......+.|+|+|+.|++...
T Consensus 75 ~~~~~~~~~~~~~~~~~s~dg-~~l~~~~----~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~ 148 (343)
T 1ri6_A 75 TFAAESALPGSLTHISTDHQG-QFVFVGS----YNAGNVSVTRLEDGLPVGVVDVVE-GLDGCHSANISPDNRTLWVPAL 148 (343)
T ss_dssp EEEEEEECSSCCSEEEECTTS-SEEEEEE----TTTTEEEEEEEETTEEEEEEEEEC-CCTTBCCCEECTTSSEEEEEEG
T ss_pred eeccccccCCCCcEEEEcCCC-CEEEEEe----cCCCeEEEEECCCCcccccccccc-CCCCceEEEECCCCCEEEEecC
Confidence 1222222 2367889999994 4443322 224689999994210022222222 2234667899999998765321
Q ss_pred ecccccCceeecceeEEEEeeCC-ccee-----eeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc--ce---
Q 013871 162 SDVDKTNQSYYGESKLNYLTTDG-THEG-----LVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC--RP--- 230 (434)
Q Consensus 162 ~~~d~~~~~~~g~~~l~~l~~~~-~~~~-----~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~--~~--- 230 (434)
.+ + .++.+++.. .... .........+..++|+|+|+++++. +..++.+.+||+.. ..
T Consensus 149 --~~-------~--~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~-~~~~~~i~~~~~~~~~g~~~~ 216 (343)
T 1ri6_A 149 --KQ-------D--RICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCV-NELNSSVDVWELKDPHGNIEC 216 (343)
T ss_dssp --GG-------T--EEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEE-ETTTTEEEEEESSCTTSCCEE
T ss_pred --CC-------C--EEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEE-eCCCCEEEEEEecCCCCcEEE
Confidence 11 1 234444433 2111 2233334578899999999988764 55678999999842 21
Q ss_pred eEEe---C-----CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEcc----CCEEEEEeeCC-CceEEEECCCCCEEEEE
Q 013871 231 ILEL---G-----SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV----DGKQLGTTRAE-CSVTSEWSPDGRYFMTA 297 (434)
Q Consensus 231 ~~~~---~-----~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~----~~~~i~~~~~~-~~~~~~wspdg~~l~ta 297 (434)
...+ . ......++|+|+|++|+++.. .++.|.+||+. +.+.+..+..+ .+..++|+|||++|+++
T Consensus 217 ~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~--~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~ 294 (343)
T 1ri6_A 217 VQTLDMMPENFSDTRWAADIHITPDGRHLYACDR--TASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAA 294 (343)
T ss_dssp EEEEECSCTTCCSCCCEEEEEECTTSSEEEEEET--TTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEE
T ss_pred EeeccccCccccccCCccceEECCCCCEEEEEec--CCCEEEEEEEcCCCCceEEeeeecCCCccceEEECCCCCEEEEe
Confidence 1111 1 123457999999998887664 34799999998 33555555433 46669999999999998
Q ss_pred EcCCceeeCCcEEEEeec---Cce--eeeeec-ccceeeEEEcCC
Q 013871 298 TTAPRLQIDNGIKIFHHN---GSL--FFKKMF-DKLFQAEWKPVS 336 (434)
Q Consensus 298 s~~prl~~D~~i~iw~~~---g~~--~~~~~~-~~~~~~~w~p~~ 336 (434)
... |+.|.||+++ |++ +..... ..-..+.|.|+.
T Consensus 295 ~~~-----~~~v~v~~~d~~~g~~~~~~~~~~g~~p~~i~~~~~~ 334 (343)
T 1ri6_A 295 GQK-----SHHISVYEIVGEQGLLHEKGRYAVGQGPMWVVVNAHE 334 (343)
T ss_dssp CTT-----TCEEEEEEEETTTTEEEEEEEEECSSSCCEEEEEEEC
T ss_pred cCC-----CCeEEEEEEcCCCceeeEccccccCCCCeeEEEEccc
Confidence 853 8999999775 433 222222 345566666654
No 131
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.87 E-value=1.1e-19 Score=178.79 Aligned_cols=261 Identities=11% Similarity=0.036 Sum_probs=176.3
Q ss_pred CCcEEEEEecCCC-CCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC----CeEEEEeCCCCCCce
Q 013871 10 VGLIIQTFQKSST-PQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT----NEIQFFDTTDFPKGI 84 (434)
Q Consensus 10 ~g~~L~t~~~~~~-~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~----~~i~v~~~~~~~~~~ 84 (434)
.+..|++.+...+ ...+.|++||+..+ .++.+..+. ..+.+++|||||++|+++.. ..|++||+.+... .
T Consensus 142 ~~~~l~~~s~~~~~~~~~~i~i~d~~g~-~~~~l~~~~---~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~-~ 216 (415)
T 2hqs_A 142 FRTRIAYVVQTNGGQFPYELRVSDYDGY-NQFVVHRSP---QPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-R 216 (415)
T ss_dssp TTCEEEEEEECSSSSCCEEEEEEETTSC-SCEEEEEES---SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-E
T ss_pred CCCEEEEEEecCCCCccceEEEEcCCCC-CCEEEeCCC---CcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcE-E
Confidence 3677777663211 11279999998754 455555543 55668999999999998853 3999999987543 2
Q ss_pred eeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecc
Q 013871 85 LYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDV 164 (434)
Q Consensus 85 ~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~ 164 (434)
....+...+..++|||+ +..+++.... .....|.+|++.+ ++ ......+......+.|+|+|+.|++... .
T Consensus 217 ~l~~~~~~~~~~~~spd-g~~la~~~~~--~g~~~i~~~d~~~---~~-~~~l~~~~~~~~~~~~spdg~~l~~~s~--~ 287 (415)
T 2hqs_A 217 QVASFPRHNGAPAFSPD-GSKLAFALSK--TGSLNLYVMDLAS---GQ-IRQVTDGRSNNTEPTWFPDSQNLAFTSD--Q 287 (415)
T ss_dssp EEECCSSCEEEEEECTT-SSEEEEEECT--TSSCEEEEEETTT---CC-EEECCCCSSCEEEEEECTTSSEEEEEEC--T
T ss_pred EeecCCCcccCEEEcCC-CCEEEEEEec--CCCceEEEEECCC---CC-EEeCcCCCCcccceEECCCCCEEEEEEC--C
Confidence 22223446889999999 5555543221 2235789999876 33 3455556677889999999999876532 1
Q ss_pred cccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccC-CCeEEEEecccceeEEe-CCcCeeEE
Q 013871 165 DKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFM-PASATIFNKKCRPILEL-GSGPYNTV 242 (434)
Q Consensus 165 d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~-~~~v~l~d~~~~~~~~~-~~~~~~~i 242 (434)
+ +...||.++..+.....+. .....+.+++|+|||+++++..... ...|.+||+.+.....+ ....+.++
T Consensus 288 ~-------g~~~i~~~d~~~~~~~~l~-~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~ 359 (415)
T 2hqs_A 288 A-------GRPQVYKVNINGGAPQRIT-WEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETP 359 (415)
T ss_dssp T-------SSCEEEEEETTSSCCEECC-CSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSSSCEEE
T ss_pred C-------CCcEEEEEECCCCCEEEEe-cCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEEecCCCCcCCe
Confidence 1 2235788877665333222 2356788999999999998754321 24899999986655555 23478899
Q ss_pred EECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCE
Q 013871 243 RWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRY 293 (434)
Q Consensus 243 ~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~ 293 (434)
+|+|+|++|++++.++..+.|++||+..+. +..+..+ .+..++|||--.|
T Consensus 360 ~~spdg~~l~~~s~~~~~~~l~~~d~~g~~-~~~l~~~~~~v~~~~~~~~~~~ 411 (415)
T 2hqs_A 360 SLAPNGTMVIYSSSQGMGSVLNLVSTDGRF-KARLPATDGQVKFPAWSPYLHH 411 (415)
T ss_dssp EECTTSSEEEEEEEETTEEEEEEEETTSCC-EEECCCSSSEEEEEEECCCCCC
T ss_pred EEcCCCCEEEEEEcCCCccEEEEEECCCCc-EEEeeCCCCCCcCCcccccccc
Confidence 999999999998854423389999997554 4444444 5667999997543
No 132
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.87 E-value=1.1e-19 Score=190.62 Aligned_cols=314 Identities=11% Similarity=0.071 Sum_probs=189.8
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEE-EEEeecCcC--------------CCCCCeeeecCCCcEEEE
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAV-YQLFQKNMT--------------KTTWPSIRFSSDEAVACR 66 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~-~~~~~~~~~--------------~~~~~~~~~S~d~~~la~ 66 (434)
+..+.|+ |..+++.+ .|+ | +||+.+|+.+ ..+...... ...+.+++|||| ++++.
T Consensus 28 ~~~~~w~--g~~~~~~~-----~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~ 97 (706)
T 2z3z_A 28 VVGLQWM--GDNYVFIE-----GDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVL 97 (706)
T ss_dssp CTTCEEE--TTEEEEEE-----TTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEE
T ss_pred CCCCcCc--CCeEEEEe-----CCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEE
Confidence 3457788 66666666 455 8 9999999873 333332100 034668999999 77777
Q ss_pred ecCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCC-CCCceeeeeecccc--
Q 013871 67 MATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDL-QSQPLARRSFFRCS-- 143 (434)
Q Consensus 67 ~~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~-~~~~i~~~~~~~~~-- 143 (434)
..++.|++||+.+... .....+...+..++|||+ +..+++. . .+.|.+|++.+.. ..............
T Consensus 98 ~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~Spd-G~~la~~-~-----~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~ 169 (706)
T 2z3z_A 98 FTQGGLVGFDMLARKV-TYLFDTNEETASLDFSPV-GDRVAYV-R-----NHNLYIARGGKLGEGMSRAIAVTIDGTETL 169 (706)
T ss_dssp EETTEEEEEETTTTEE-EEEECCTTCCTTCEECTT-SSEEEEE-E-----TTEEEEEECBCTTSCCCCCEESCSCCBTTE
T ss_pred EECCEEEEEECCCCce-EEccCCcccccCCcCCCC-CCEEEEE-E-----CCeEEEEecCcccccCCCcEEeccCCCCCe
Confidence 7889999999976432 112222346788999999 5566553 2 2689999986500 00111221211111
Q ss_pred -------------eeEEEECCCCCeEEEEEEecccccCce---------------------eecceeEEEEeeCCcceee
Q 013871 144 -------------TVQLNWNRGSTGLLAVAQSDVDKTNQS---------------------YYGESKLNYLTTDGTHEGL 189 (434)
Q Consensus 144 -------------~~~~~ws~~G~~l~~~~~~~~d~~~~~---------------------~~g~~~l~~l~~~~~~~~~ 189 (434)
...+.|+|||+.|++....+....... -.+...|+.+++.+.....
T Consensus 170 ~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~ 249 (706)
T 2z3z_A 170 VYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVY 249 (706)
T ss_dssp EESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEE
T ss_pred EcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEe
Confidence 368999999999887642111000000 0133467888877654333
Q ss_pred eec--CCCCCeEEEEECcCCCEEEEEEccCC---CeEEEEecccc-eeEEe----CCc---CeeEEEECC--CCCeEEEE
Q 013871 190 VPL--RKEGPVHDVQWSYSGSEFAVVYGFMP---ASATIFNKKCR-PILEL----GSG---PYNTVRWNP--KGKFLCLA 254 (434)
Q Consensus 190 v~l--~~~~~i~~v~wspdg~~~av~~g~~~---~~v~l~d~~~~-~~~~~----~~~---~~~~i~~SP--~g~~l~~~ 254 (434)
+.. .+...+.+++|+|||+.+++...... ..|.+||+... ....+ +.. .++.+.||| ||++|+++
T Consensus 250 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~ 329 (706)
T 2z3z_A 250 LQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQS 329 (706)
T ss_dssp CCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEE
T ss_pred eccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEE
Confidence 332 23467899999999999987443221 28999999755 43332 121 246789999 99988877
Q ss_pred ecCCCCCeEEEEEcc-CCEEEEEeeCC--CceE-EEECCCCCEEEEEEcCCceeeCC----cEEEEeecCceeeee-ecc
Q 013871 255 GFGNLPGDMAFWDYV-DGKQLGTTRAE--CSVT-SEWSPDGRYFMTATTAPRLQIDN----GIKIFHHNGSLFFKK-MFD 325 (434)
Q Consensus 255 ~~~~~~g~i~iwd~~-~~~~i~~~~~~--~~~~-~~wspdg~~l~tas~~prl~~D~----~i~iw~~~g~~~~~~-~~~ 325 (434)
. .+|.+.||+++ +++.+..+..+ .+.. ++|||||+.|++++.. ++ .|.+|+..+..+... +..
T Consensus 330 ~---~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~-----~~~~~~~l~~~d~~~~~~~~l~~~~ 401 (706)
T 2z3z_A 330 R---RDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTE-----ASPLERHFYCIDIKGGKTKDLTPES 401 (706)
T ss_dssp C---TTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESS-----SCTTCBEEEEEETTCCCCEESCCSS
T ss_pred c---cCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecC-----CCCceEEEEEEEcCCCCceeccCCC
Confidence 6 34678888766 55555555544 3444 7999999999888773 43 455555544333222 334
Q ss_pred cceeeEEEcCCCCCCC
Q 013871 326 KLFQAEWKPVSPDKFG 341 (434)
Q Consensus 326 ~~~~~~w~p~~~~~~~ 341 (434)
.+..+.|+|++..++.
T Consensus 402 ~~~~~~~spdg~~l~~ 417 (706)
T 2z3z_A 402 GMHRTQLSPDGSAIID 417 (706)
T ss_dssp SEEEEEECTTSSEEEE
T ss_pred ceEEEEECCCCCEEEE
Confidence 5788999999876543
No 133
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.86 E-value=2.6e-20 Score=191.17 Aligned_cols=271 Identities=12% Similarity=0.032 Sum_probs=175.9
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC----CeEEEEeC
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT----NEIQFFDT 77 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~----~~i~v~~~ 77 (434)
|++++|||||++|++.+. .|++++||++.+|+. ..+.... ...+..+.|||| +++++... ...++|.+
T Consensus 24 ~~~~~~~~DG~~la~~s~----~~g~~~lw~~~~g~~-~~lt~~~--~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~ 95 (582)
T 3o4h_A 24 KYSLQGVVDGDKLLVVGF----SEGSVNAYLYDGGET-VKLNREP--INSVLDPHYGVG-RVILVRDVSKGAEQHALFKV 95 (582)
T ss_dssp EEEEEEEETTTEEEEEEE----ETTEEEEEEEETTEE-EECCSSC--CSEECEECTTCS-EEEEEEECSTTSCCEEEEEE
T ss_pred hheeecCCCCCeEEEEEc----cCCceeEEEEcCCCc-Eeeeccc--ccccccccCCCC-eEEEEeccCCCCcceEEEEE
Confidence 688999999999999872 278999999976654 4443332 134558999999 76665532 45566655
Q ss_pred CC--CCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCe
Q 013871 78 TD--FPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTG 155 (434)
Q Consensus 78 ~~--~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~ 155 (434)
+. ..... ......++...+|+|+++..+.+ .. ..+.+.||++.+ ++. ..+..... ..+.|+|||+.
T Consensus 96 ~~~~~g~~~-~l~~~~~~~~~~~s~dg~~~~~~-s~----~~~~~~l~d~~~---g~~-~~l~~~~~--~~~~~spDG~~ 163 (582)
T 3o4h_A 96 NTSRPGEEQ-RLEAVKPMRILSGVDTGEAVVFT-GA----TEDRVALYALDG---GGL-RELARLPG--FGFVSDIRGDL 163 (582)
T ss_dssp ETTSTTCCE-ECTTSCSBEEEEEEECSSCEEEE-EE----CSSCEEEEEEET---TEE-EEEEEESS--CEEEEEEETTE
T ss_pred eccCCCccc-cccCCCCceeeeeCCCCCeEEEE-ec----CCCCceEEEccC---CcE-EEeecCCC--ceEEECCCCCE
Confidence 43 22211 11223456677999986543322 21 112345999876 332 22222222 78999999999
Q ss_pred EEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCC--eEEEEecccceeEE
Q 013871 156 LLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPA--SATIFNKKCRPILE 233 (434)
Q Consensus 156 l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~--~v~l~d~~~~~~~~ 233 (434)
|++..... . +...||.+++.++....+ ..+.+.+.+++|||||+.++ ++..++ .|.+||+.+.....
T Consensus 164 la~~~~~~---~-----~~~~i~~~d~~~g~~~~l-~~~~~~~~~~~~SpDG~~l~--~~~~~~~~~i~~~d~~~~~~~~ 232 (582)
T 3o4h_A 164 IAGLGFFG---G-----GRVSLFTSNLSSGGLRVF-DSGEGSFSSASISPGMKVTA--GLETAREARLVTVDPRDGSVED 232 (582)
T ss_dssp EEEEEEEE---T-----TEEEEEEEETTTCCCEEE-CCSSCEEEEEEECTTSCEEE--EEECSSCEEEEEECTTTCCEEE
T ss_pred EEEEEEcC---C-----CCeEEEEEcCCCCCceEe-ecCCCccccceECCCCCEEE--EccCCCeeEEEEEcCCCCcEEE
Confidence 87653221 1 113478888766533332 34467789999999999999 345566 89999997655443
Q ss_pred e--CCcCeeEEE--------ECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceEEEECCCCCEEEEEEcCCce
Q 013871 234 L--GSGPYNTVR--------WNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRL 303 (434)
Q Consensus 234 ~--~~~~~~~i~--------~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~~~wspdg~~l~tas~~prl 303 (434)
+ +...+..+. |||||++++++. .+|.+.+|++ ++.+.... ..+..++|| ||+.+++++.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~---~~g~~~l~~~--g~~~~~~~-~~v~~~~~s-dg~~l~~~s~---- 301 (582)
T 3o4h_A 233 LELPSKDFSSYRPTAITWLGYLPDGRLAVVAR---REGRSAVFID--GERVEAPQ-GNHGRVVLW-RGKLVTSHTS---- 301 (582)
T ss_dssp CCCSCSHHHHHCCSEEEEEEECTTSCEEEEEE---ETTEEEEEET--TEEECCCS-SEEEEEEEE-TTEEEEEEEE----
T ss_pred ccCCCcChhhhhhccccceeEcCCCcEEEEEE---cCCcEEEEEE--CCeeccCC-CceEEEEec-CCEEEEEEcC----
Confidence 3 344455566 999997777776 4579999999 76655322 345569999 9999998887
Q ss_pred eeCC---cEEEEeecC
Q 013871 304 QIDN---GIKIFHHNG 316 (434)
Q Consensus 304 ~~D~---~i~iw~~~g 316 (434)
+. .+.+|+..+
T Consensus 302 --~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 302 --LSTPPRIVSLPSGE 315 (582)
T ss_dssp --TTEEEEEEEETTCC
T ss_pred --CCCCCeEEEEcCCC
Confidence 43 356666554
No 134
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.86 E-value=7e-20 Score=175.31 Aligned_cols=273 Identities=11% Similarity=0.093 Sum_probs=187.3
Q ss_pred EcCCCcEEEEEeecCcCCCCCCeeeecCC---CcEEEEec-CCeEEEEeCCCCCCc--eeeeeecCCeeEEEEeCCCCCe
Q 013871 32 KTETGEAVYQLFQKNMTKTTWPSIRFSSD---EAVACRMA-TNEIQFFDTTDFPKG--ILYRLRVPGVAAFEVSKAPGSH 105 (434)
Q Consensus 32 d~~~g~~~~~~~~~~~~~~~~~~~~~S~d---~~~la~~~-~~~i~v~~~~~~~~~--~~~~~~~~~v~~~~~sp~~~~~ 105 (434)
+....+.+..+.. |...+.+++|+|| |++|+++. ++.|++|++...... .....+...|.+++|+|+ +..
T Consensus 25 ~~~~~~~~~~~~~---h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~ 100 (368)
T 3mmy_A 25 NHNPMKDIEVTSS---PDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDD-GSK 100 (368)
T ss_dssp SSCTTCCEECSSC---CSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTT-SSE
T ss_pred CCCCcceeEeccC---CCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcC-CCE
Confidence 3344445555444 3477889999999 58998885 689999999863322 233445678999999998 455
Q ss_pred EEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEE--CCCCCeEEEEEEecccccCceeecceeEEEEeeC
Q 013871 106 VAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNW--NRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTD 183 (434)
Q Consensus 106 ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~w--s~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~ 183 (434)
+++. +.++.|++|++.+ .+.+. ...+...+..+.| +++|..++... .|.. +..+++.
T Consensus 101 l~s~-----~~dg~v~iwd~~~---~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~---~dg~---------i~vwd~~ 159 (368)
T 3mmy_A 101 VFTA-----SCDKTAKMWDLSS---NQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGS---WDKT---------LKFWDTR 159 (368)
T ss_dssp EEEE-----ETTSEEEEEETTT---TEEEE-EEECSSCEEEEEEEECSSCEEEEEEE---TTSE---------EEEECSS
T ss_pred EEEE-----cCCCcEEEEEcCC---CCcee-eccccCceEEEEEEeCCCCCEEEEcc---CCCc---------EEEEECC
Confidence 5532 4567999999987 44443 5567888999999 88888765432 2322 3344433
Q ss_pred CcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccce--eEEe---CCcCeeEEEECCCCCe----EEEE
Q 013871 184 GTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP--ILEL---GSGPYNTVRWNPKGKF----LCLA 254 (434)
Q Consensus 184 ~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~--~~~~---~~~~~~~i~~SP~g~~----l~~~ 254 (434)
.. .....+.....+..+.+.++ .+++ +..++.+.+||++... .... ......++.+.+++.. ++++
T Consensus 160 ~~-~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (368)
T 3mmy_A 160 SS-NPMMVLQLPERCYCADVIYP--MAVV--ATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALG 234 (368)
T ss_dssp CS-SCSEEEECSSCEEEEEEETT--EEEE--EEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEE
T ss_pred CC-cEEEEEecCCCceEEEecCC--eeEE--EeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEe
Confidence 32 22223333456667776653 4553 4557799999996432 2222 3455666776666654 8888
Q ss_pred ecCCCCCeEEEEEccCC---EEEEEeeCC--------------CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec-C
Q 013871 255 GFGNLPGDMAFWDYVDG---KQLGTTRAE--------------CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-G 316 (434)
Q Consensus 255 ~~~~~~g~i~iwd~~~~---~~i~~~~~~--------------~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~-g 316 (434)
+ .+|.|.+||++.. +.+..+..+ .+..++|+|||++|++++. |+.|+|||+. +
T Consensus 235 ~---~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~------dg~i~iwd~~~~ 305 (368)
T 3mmy_A 235 S---IEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGS------DGRFSFWDKDAR 305 (368)
T ss_dssp E---TTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEET------TSCEEEEETTTT
T ss_pred c---CCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEcc------CCeEEEEECCCC
Confidence 8 5679999999876 444555554 3667999999999999999 9999999996 4
Q ss_pred ceeeee--ecccceeeEEEcCCCCCCCCc
Q 013871 317 SLFFKK--MFDKLFQAEWKPVSPDKFGDI 343 (434)
Q Consensus 317 ~~~~~~--~~~~~~~~~w~p~~~~~~~~~ 343 (434)
+++... +...+..++|.|++..++...
T Consensus 306 ~~~~~~~~~~~~v~~~~~s~~g~~l~~~s 334 (368)
T 3mmy_A 306 TKLKTSEQLDQPISACCFNHNGNIFAYAS 334 (368)
T ss_dssp EEEEECCCCSSCEEEEEECTTSSCEEEEE
T ss_pred cEEEEecCCCCCceEEEECCCCCeEEEEe
Confidence 555443 346799999999998888764
No 135
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.86 E-value=1.1e-19 Score=199.05 Aligned_cols=307 Identities=11% Similarity=0.012 Sum_probs=196.2
Q ss_pred cceEEecCCCcEEEEEecCCC-CCCCcEEEEEcCCCcEEEEEeec-----------------------------------
Q 013871 2 LLLLTCLRVGLIIQTFQKSST-PQEKNVILWKTETGEAVYQLFQK----------------------------------- 45 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~-~~d~~v~iWd~~~g~~~~~~~~~----------------------------------- 45 (434)
+.+++|||||+.|++.+.... ..+..|.+|++.+++........
T Consensus 109 ~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw 188 (1045)
T 1k32_A 109 TDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIW 188 (1045)
T ss_dssp SEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEE
T ss_pred cccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEE
Confidence 478999999996665542111 12246888888776542211000
Q ss_pred -----------CcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCCCCceeeee-ecCCeeEEEEeCCCCCeEEEEecC
Q 013871 46 -----------NMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDFPKGILYRL-RVPGVAAFEVSKAPGSHVAVFVPE 112 (434)
Q Consensus 46 -----------~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~~~~~~~~~-~~~~v~~~~~sp~~~~~ia~~~~~ 112 (434)
..+...+.++.|++| .+++.+ .++.+++|.+..... ....+ ....+..+.|||+ +..+++.
T Consensus 189 ~~~~~~~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~-~~~~l~~~~~~~~~~~SpD-G~~la~~--- 262 (1045)
T 1k32_A 189 IEVNSGAFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGK-DLRKHTSFTDYYPRHLNTD-GRRILFS--- 262 (1045)
T ss_dssp EEEETTEEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSC-SCEECCCCCSSCEEEEEES-SSCEEEE---
T ss_pred EECCCCCeEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCC-cceEecCCCCcceeeEcCC-CCEEEEE---
Confidence 001234456788888 444444 346778887543111 11121 2234667799999 4555543
Q ss_pred CCCCCceEEEEEcCCCCCCCceeeeee-----------cccceeEEEEC-CCCCeEEEEEEecccccCceeecceeEEEE
Q 013871 113 SKGSPASVQIYACGKDLQSQPLARRSF-----------FRCSTVQLNWN-RGSTGLLAVAQSDVDKTNQSYYGESKLNYL 180 (434)
Q Consensus 113 ~~~~~~~v~i~~~~~~~~~~~i~~~~~-----------~~~~~~~~~ws-~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l 180 (434)
..+.|.+|++. ...+..... +......+.|+ |+|+.|++.. ...++.+
T Consensus 263 ---~~~~i~~~d~~----~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-------------~~~i~~~ 322 (1045)
T 1k32_A 263 ---KGGSIYIFNPD----TEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-------------RGQAFIQ 322 (1045)
T ss_dssp ---ETTEEEEECTT----TCCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-------------TTEEEEE
T ss_pred ---eCCEEEEecCC----ceEeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-------------cCEEEEE
Confidence 24678888873 233333222 22356789999 9999987753 1136666
Q ss_pred eeCCcceeeeecCCCC-CeEEEEECcCCCEEEEEEccCCCeEE-EEecccceeEEe--CCcCeeEEEECCCCCeEEEEec
Q 013871 181 TTDGTHEGLVPLRKEG-PVHDVQWSYSGSEFAVVYGFMPASAT-IFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGF 256 (434)
Q Consensus 181 ~~~~~~~~~v~l~~~~-~i~~v~wspdg~~~av~~g~~~~~v~-l~d~~~~~~~~~--~~~~~~~i~~SP~g~~l~~~~~ 256 (434)
+..+.....+ ..+.+ .+..++|+ ||+.+++++. +..+. +||+.+.....+ +...+..++|||||++|++++
T Consensus 323 ~~~~~~~~~~-~~~~~~~~~~~~~s-dg~~l~~~s~--~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~- 397 (1045)
T 1k32_A 323 DVSGTYVLKV-PEPLRIRYVRRGGD-TKVAFIHGTR--EGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVAN- 397 (1045)
T ss_dssp CTTSSBEEEC-SCCSCEEEEEECSS-SEEEEEEEET--TEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEE-
T ss_pred cCCCCceEEc-cCCCcceEEeeeEc-CCCeEEEEEC--CCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEEC-
Confidence 6655432222 22345 78999999 9999997543 66888 899876655544 456788999999999999988
Q ss_pred CCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCC---c-eeeCCcEEEEeecCceeeee--ecccce
Q 013871 257 GNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAP---R-LQIDNGIKIFHHNGSLFFKK--MFDKLF 328 (434)
Q Consensus 257 ~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~p---r-l~~D~~i~iw~~~g~~~~~~--~~~~~~ 328 (434)
.++.|++||+.+++.......+ .+..++|||||++|++++... . ...++.|++||+.+..+... +.....
T Consensus 398 --~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~~~~~~~ 475 (1045)
T 1k32_A 398 --DRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDY 475 (1045)
T ss_dssp --TTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEE
T ss_pred --CCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEeeCCCcccC
Confidence 4569999999999877766444 445699999999999987620 0 00124899999976544332 334577
Q ss_pred eeEEEcCCCCCCC
Q 013871 329 QAEWKPVSPDKFG 341 (434)
Q Consensus 329 ~~~w~p~~~~~~~ 341 (434)
.+.|.|++..++.
T Consensus 476 ~~~~spdG~~l~~ 488 (1045)
T 1k32_A 476 APAFDADSKNLYY 488 (1045)
T ss_dssp EEEECTTSCEEEE
T ss_pred CceEcCCCCEEEE
Confidence 8899999987664
No 136
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.86 E-value=1.8e-19 Score=190.32 Aligned_cols=315 Identities=10% Similarity=0.015 Sum_probs=191.6
Q ss_pred ceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCC--CeeeecCCCcEEEEecC----------C
Q 013871 3 LLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTW--PSIRFSSDEAVACRMAT----------N 70 (434)
Q Consensus 3 ~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~--~~~~~S~d~~~la~~~~----------~ 70 (434)
.++.|||||++|++. |++|++||+.+|++...+..+......+ ..++|||||++|++..+ +
T Consensus 20 ~~~~w~~dg~~~~~~-------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~ 92 (740)
T 4a5s_A 20 YSLRWISDHEYLYKQ-------ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTA 92 (740)
T ss_dssp CCEEECSSSEEEEEE-------TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEE
T ss_pred cccEECCCCcEEEEc-------CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccce
Confidence 578999999999872 6899999999999866665543211112 13789999999998865 5
Q ss_pred eEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecc---------
Q 013871 71 EIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFR--------- 141 (434)
Q Consensus 71 ~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~--------- 141 (434)
.+.+||+.+... .....+...+...+|||+ +..||+.. ...|.+|++.. +.. .+++...
T Consensus 93 ~~~~~d~~~~~~-~~l~~~~~~~~~~~~SPd-G~~la~~~------~~~i~~~~~~~---~~~-~~lt~~g~~~~~~~g~ 160 (740)
T 4a5s_A 93 SYDIYDLNKRQL-ITEERIPNNTQWVTWSPV-GHKLAYVW------NNDIYVKIEPN---LPS-YRITWTGKEDIIYNGI 160 (740)
T ss_dssp EEEEEETTTTEE-CCSSCCCTTEEEEEECSS-TTCEEEEE------TTEEEEESSTT---SCC-EECCSCCBTTTEEESB
T ss_pred EEEEEECCCCcE-EEcccCCCcceeeEECCC-CCEEEEEE------CCeEEEEECCC---Cce-EEEcCCCCccceecCc
Confidence 778999987432 112223456899999999 55665532 24788888865 332 2222211
Q ss_pred ----------cceeEEEECCCCCeEEEEEEecccccCcee--------------------------ecceeEEEEeeCC-
Q 013871 142 ----------CSTVQLNWNRGSTGLLAVAQSDVDKTNQSY--------------------------YGESKLNYLTTDG- 184 (434)
Q Consensus 142 ----------~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~--------------------------~g~~~l~~l~~~~- 184 (434)
.....+.|||||+.|++....+.. ...| .....|+.+++.+
T Consensus 161 ~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~--v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~ 238 (740)
T 4a5s_A 161 TDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTE--VPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSL 238 (740)
T ss_dssp CCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTT--CCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSC
T ss_pred ccccccchhcCCCcceEECCCCCEEEEEEEcccC--CceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCC
Confidence 111348999999998876422110 1110 1123577777766
Q ss_pred --c---ceeeeec-----CCCCCeEEEEECcCCCEEEEEEccC--CCeEEEEecccce-------eEE----eCCcCee-
Q 013871 185 --T---HEGLVPL-----RKEGPVHDVQWSYSGSEFAVVYGFM--PASATIFNKKCRP-------ILE----LGSGPYN- 240 (434)
Q Consensus 185 --~---~~~~v~l-----~~~~~i~~v~wspdg~~~av~~g~~--~~~v~l~d~~~~~-------~~~----~~~~~~~- 240 (434)
. ....+.. .+...+..++|||||+.+++..... ...|.+||+.+.. +.. -+...++
T Consensus 239 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~ 318 (740)
T 4a5s_A 239 SSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGR 318 (740)
T ss_dssp CSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSS
T ss_pred CCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEcc
Confidence 4 2223322 1455688999999998666543322 2378899986432 222 2344443
Q ss_pred ----EEEECCCCCeEE-EEecCCCCCeEEEEEccCCEEEEEeeCC-CceEEEECCCCCEEEEEEcC-CceeeCCcEEEEe
Q 013871 241 ----TVRWNPKGKFLC-LAGFGNLPGDMAFWDYVDGKQLGTTRAE-CSVTSEWSPDGRYFMTATTA-PRLQIDNGIKIFH 313 (434)
Q Consensus 241 ----~i~~SP~g~~l~-~~~~~~~~g~i~iwd~~~~~~i~~~~~~-~~~~~~wspdg~~l~tas~~-prl~~D~~i~iw~ 313 (434)
.+.|||||+.|+ ..+..+....|++||..+++......+. .+..+ +++||+.|+..+.. ..-.....|...+
T Consensus 319 ~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~g~~~v~~~-~~~d~~~i~f~~~~~~~~~~~~~ly~v~ 397 (740)
T 4a5s_A 319 FRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVIGI-EALTSDYLYYISNEYKGMPGGRNLYKIQ 397 (740)
T ss_dssp SSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEESCCSSSCEEEE-EEECSSEEEEEESCGGGCTTCBEEEEEE
T ss_pred CcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEecccCCEEEEEE-EEEeCCEEEEEEecCCCCCceeEEEEEE
Confidence 789999999877 6654433468999999887666555554 33332 33558877776652 0000012344444
Q ss_pred ecCceee-eee------cccceeeEEEcCCCCC
Q 013871 314 HNGSLFF-KKM------FDKLFQAEWKPVSPDK 339 (434)
Q Consensus 314 ~~g~~~~-~~~------~~~~~~~~w~p~~~~~ 339 (434)
+.|.... ... ......+.|+|++..+
T Consensus 398 ~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~ 430 (740)
T 4a5s_A 398 LIDYTKVTCLSCELNPERCQYYSVSFSKEAKYY 430 (740)
T ss_dssp TTEEEEEEESSTTTSTTTBCBEEEEECTTSSEE
T ss_pred CCCCCcceeeccccCCCCCceEEEEECCCCCEE
Confidence 4554322 111 1346788899887654
No 137
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.86 E-value=4.3e-19 Score=167.96 Aligned_cols=269 Identities=9% Similarity=-0.010 Sum_probs=181.0
Q ss_pred cEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCC-CCCeeeecCCCcEEEEe-c-CCeEEEEeCCCCCCceeeee
Q 013871 12 LIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKT-TWPSIRFSSDEAVACRM-A-TNEIQFFDTTDFPKGILYRL 88 (434)
Q Consensus 12 ~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~-~~~~~~~S~d~~~la~~-~-~~~i~v~~~~~~~~~~~~~~ 88 (434)
.+|++.+ .++.|.+||+.+++.+..+..... . ....++|+||+++++.. . ++.|.+||..+.... ..+
T Consensus 2 ~~~v~~~-----~~~~v~~~d~~~~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~--~~~ 72 (337)
T 1pby_B 2 DYILAPA-----RPDKLVVIDTEKMAVDKVITIADA--GPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETL--GRI 72 (337)
T ss_dssp EEEEEEE-----TTTEEEEEETTTTEEEEEEECTTC--TTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEE--EEE
T ss_pred cEEEEcC-----CCCeEEEEECCCCcEEEEEEcCCC--CCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeE--eeE
Confidence 5788888 789999999999998888765421 1 34589999999866544 3 569999998775432 223
Q ss_pred ecC-------CeeEEEEeCCCCCeEEEEecC----CCC---CCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCC
Q 013871 89 RVP-------GVAAFEVSKAPGSHVAVFVPE----SKG---SPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGST 154 (434)
Q Consensus 89 ~~~-------~v~~~~~sp~~~~~ia~~~~~----~~~---~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~ 154 (434)
... .+..++|+|++ ..+++.... ... .++.|.+|++.+ .+.+..... ......+.|+|+|+
T Consensus 73 ~~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~---~~~~~~~~~-~~~~~~~~~s~dg~ 147 (337)
T 1pby_B 73 DLSTPEERVKSLFGAALSPDG-KTLAIYESPVRLELTHFEVQPTRVALYDAET---LSRRKAFEA-PRQITMLAWARDGS 147 (337)
T ss_dssp ECCBTTEEEECTTCEEECTTS-SEEEEEEEEEEECSSCEEECCCEEEEEETTT---TEEEEEEEC-CSSCCCEEECTTSS
T ss_pred EcCCcccccccccceEECCCC-CEEEEEecccccccccccccCceEEEEECCC---CcEEEEEeC-CCCcceeEECCCCC
Confidence 321 56789999984 444433210 011 357899999976 555544443 33456788999999
Q ss_pred eEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCC---------------
Q 013871 155 GLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPA--------------- 219 (434)
Q Consensus 155 ~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~--------------- 219 (434)
.|++. + ..++.++...... ...+........+.|+|||+.+++. +...+
T Consensus 148 ~l~~~-----~---------~~i~~~d~~~~~~-~~~~~~~~~~~~~~~s~dg~~l~~~-~~~~~~~~~~~~~~~~~~~~ 211 (337)
T 1pby_B 148 KLYGL-----G---------RDLHVMDPEAGTL-VEDKPIQSWEAETYAQPDVLAVWNQ-HESSGVMATPFYTARKDIDP 211 (337)
T ss_dssp CEEEE-----S---------SSEEEEETTTTEE-EEEECSTTTTTTTBCCCBCCCCCCC-CTTTTEEEEEEEEEBTTSCT
T ss_pred EEEEe-----C---------CeEEEEECCCCcE-eeeeeccccCCCceeCCCccEEeee-ccCCCceeeeeecccccccc
Confidence 87664 1 1256666554422 1112111111234889999877642 32222
Q ss_pred --------eEEEEecccceeEEe----CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC-CceEEE
Q 013871 220 --------SATIFNKKCRPILEL----GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-CSVTSE 286 (434)
Q Consensus 220 --------~v~l~d~~~~~~~~~----~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-~~~~~~ 286 (434)
.+.+||++...+..+ +......++|+|+|++|+++. +.|.+||+.+++.+..+..+ .+..++
T Consensus 212 ~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~-----~~v~~~d~~~~~~~~~~~~~~~~~~~~ 286 (337)
T 1pby_B 212 ADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAY-----NVLESFDLEKNASIKRVPLPHSYYSVN 286 (337)
T ss_dssp TSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEEE-----SEEEEEETTTTEEEEEEECSSCCCEEE
T ss_pred ccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEeC-----CeEEEEECCCCcCcceecCCCceeeEE
Confidence 468889875443222 345677899999999998872 69999999999888777644 666799
Q ss_pred ECCCCCEEEEEEcCCceeeCCcEEEEeec-Cceeee
Q 013871 287 WSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLFFK 321 (434)
Q Consensus 287 wspdg~~l~tas~~prl~~D~~i~iw~~~-g~~~~~ 321 (434)
|+|||++|++++. |+.|++|+.. ++.+..
T Consensus 287 ~s~dg~~l~~~~~------~~~i~v~d~~~~~~~~~ 316 (337)
T 1pby_B 287 VSTDGSTVWLGGA------LGDLAAYDAETLEKKGQ 316 (337)
T ss_dssp ECTTSCEEEEESB------SSEEEEEETTTCCEEEE
T ss_pred ECCCCCEEEEEcC------CCcEEEEECcCCcEEEE
Confidence 9999999999876 9999999985 454443
No 138
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.86 E-value=9.6e-20 Score=199.46 Aligned_cols=291 Identities=11% Similarity=0.030 Sum_probs=196.4
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCC-CcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCC
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTET-GEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDF 80 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~-g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~ 80 (434)
|.++.|||+ .++++.+ .|+.+.||.+.. +..+..+..+ ..+..+.|||||++++++.+++|.+|+...
T Consensus 206 v~~~~~s~d-~l~~~~~-----~dg~~~l~~~~~~g~~~~~l~~~----~~~~~~~~SpDG~~la~~~~~~i~~~d~~~- 274 (1045)
T 1k32_A 206 VSSPVIVGH-RIYFITD-----IDGFGQIYSTDLDGKDLRKHTSF----TDYYPRHLNTDGRRILFSKGGSIYIFNPDT- 274 (1045)
T ss_dssp CEEEEEETT-EEEEEEC-----TTSSCEEEEEETTSCSCEECCCC----CSSCEEEEEESSSCEEEEETTEEEEECTTT-
T ss_pred ccceEEeCC-EEEEEEe-----ccCceEEEEEeCCCCcceEecCC----CCcceeeEcCCCCEEEEEeCCEEEEecCCc-
Confidence 567889988 5555544 567788887642 3334444433 234578999999999999999999999833
Q ss_pred CCceeeeeec-------------CCeeEEEEe-CCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeeccc-cee
Q 013871 81 PKGILYRLRV-------------PGVAAFEVS-KAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRC-STV 145 (434)
Q Consensus 81 ~~~~~~~~~~-------------~~v~~~~~s-p~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~-~~~ 145 (434)
.. ...+.. ..+..++|| |+ +..+++.. .+.+.+|++.. +. ......+.. ...
T Consensus 275 ~~--l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pd-G~~la~~~------~~~i~~~~~~~---~~-~~~~~~~~~~~~~ 341 (1045)
T 1k32_A 275 EK--IEKIEIGDLESPEDRIISIPSKFAEDFSPLD-GDLIAFVS------RGQAFIQDVSG---TY-VLKVPEPLRIRYV 341 (1045)
T ss_dssp CC--EEECCCCCCCBCCSEEEECGGGGEEEEEECG-GGCEEEEE------TTEEEEECTTS---SB-EEECSCCSCEEEE
T ss_pred eE--eeeeccCcccccccccccccccceeeecCCC-CCEEEEEE------cCEEEEEcCCC---Cc-eEEccCCCcceEE
Confidence 21 112221 258899999 98 45555543 35788888765 33 333444444 667
Q ss_pred EEEECCCCCeEEEEEEecccccCceeecceeEE-EEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEE
Q 013871 146 QLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLN-YLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIF 224 (434)
Q Consensus 146 ~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~-~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~ 224 (434)
.+.|+ +|+.|++... ...++ .++..+.....+. .+...+..++|||||+.+++ +..++.+.+|
T Consensus 342 ~~~~s-dg~~l~~~s~------------~~~l~~~~d~~~~~~~~l~-~~~~~~~~~~~SpDG~~la~--~~~~~~v~~~ 405 (1045)
T 1k32_A 342 RRGGD-TKVAFIHGTR------------EGDFLGIYDYRTGKAEKFE-ENLGNVFAMGVDRNGKFAVV--ANDRFEIMTV 405 (1045)
T ss_dssp EECSS-SEEEEEEEET------------TEEEEEEEETTTCCEEECC-CCCCSEEEEEECTTSSEEEE--EETTSEEEEE
T ss_pred eeeEc-CCCeEEEEEC------------CCceEEEEECCCCCceEec-CCccceeeeEECCCCCEEEE--ECCCCeEEEE
Confidence 89999 9998876521 12466 6666555333333 45678999999999999995 4557899999
Q ss_pred ecccceeEE---eCCcCeeEEEECCCCCeEEEEecCC-------CCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCC
Q 013871 225 NKKCRPILE---LGSGPYNTVRWNPKGKFLCLAGFGN-------LPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGR 292 (434)
Q Consensus 225 d~~~~~~~~---~~~~~~~~i~~SP~g~~l~~~~~~~-------~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~ 292 (434)
|+....... .+.+.+..++|||||++|++++.+. .++.|++||+.+++ +..+..+ ....++|+|||+
T Consensus 406 d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~ 484 (1045)
T 1k32_A 406 DLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSK 484 (1045)
T ss_dssp ETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSC
T ss_pred ECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCC
Confidence 997544332 3667789999999999998876421 23589999999988 4444433 345589999999
Q ss_pred EEEEEEcCCceeeCCcEEEEeecCceeeeeecccceeeEEEcCCCCC
Q 013871 293 YFMTATTAPRLQIDNGIKIFHHNGSLFFKKMFDKLFQAEWKPVSPDK 339 (434)
Q Consensus 293 ~l~tas~~prl~~D~~i~iw~~~g~~~~~~~~~~~~~~~w~p~~~~~ 339 (434)
+|++++. ++..++|+.....+.......++.+.+.+.....
T Consensus 485 ~l~~~s~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 525 (1045)
T 1k32_A 485 NLYYLSY------RSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNP 525 (1045)
T ss_dssp EEEEEES------CCCCCEECSSSSCEECCSCBEEEEEESSTTCCCG
T ss_pred EEEEEec------ccCCcCcchhccccccccCceeEEEEeCCCCCCc
Confidence 9999998 8888888864332222222345555555554443
No 139
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.85 E-value=5.8e-20 Score=173.88 Aligned_cols=226 Identities=15% Similarity=0.186 Sum_probs=160.8
Q ss_pred eeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCC--CCeEEEEEEecc
Q 013871 87 RLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRG--STGLLAVAQSDV 164 (434)
Q Consensus 87 ~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~--G~~l~~~~~~~~ 164 (434)
..|...|.+++|+|+ +..++. ++.++.|+||++.+.. ...+.....|...+..+.|+++ |+.|+. ...
T Consensus 10 ~~H~~~V~~v~~s~~-g~~las-----gs~D~~v~lwd~~~~~-~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s---~s~ 79 (316)
T 3bg1_A 10 TSHEDMIHDAQMDYY-GTRLAT-----CSSDRSVKIFDVRNGG-QILIADLRGHEGPVWQVAWAHPMYGNILAS---CSY 79 (316)
T ss_dssp ----CCEEEEEECGG-GCEEEE-----EETTTEEEEEEEETTE-EEEEEEEECCSSCEEEEEECCGGGSSCEEE---EET
T ss_pred ccccCeEEEeeEcCC-CCEEEE-----EeCCCeEEEEEecCCC-cEEEEEEcCCCccEEEEEeCCCCCCCEEEE---EEC
Confidence 345667999999998 455653 3567899999997621 1245667778889999999863 776543 235
Q ss_pred cccCceeecceeEEEEeeCCc-ceeeeec-CCCCCeEEEEECcC--CCEEEEEEccCCCeEEEEecccce----eEE--e
Q 013871 165 DKTNQSYYGESKLNYLTTDGT-HEGLVPL-RKEGPVHDVQWSYS--GSEFAVVYGFMPASATIFNKKCRP----ILE--L 234 (434)
Q Consensus 165 d~~~~~~~g~~~l~~l~~~~~-~~~~v~l-~~~~~i~~v~wspd--g~~~av~~g~~~~~v~l~d~~~~~----~~~--~ 234 (434)
|.+.+.|. + ... ......+ .+.+.|.+++|+|+ |..|+ +|..|+.|++||++... ... .
T Consensus 80 D~~v~iWd-------~--~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~la--sgs~D~~i~lwd~~~~~~~~~~~~~~~ 148 (316)
T 3bg1_A 80 DRKVIIWR-------E--ENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILA--CGSSDGAISLLTYTGEGQWEVKKINNA 148 (316)
T ss_dssp TSCEEEEC-------C--SSSCCCEEEEECCCSSCCCEEEECCTTTCSCEE--EECSSSCEEEEEECSSSCEEECCBTTS
T ss_pred CCEEEEEE-------C--CCCcceEEEEccCCCCceEEEEECCCCCCcEEE--EEcCCCCEEEEecCCCCCcceeeeecc
Confidence 55555432 2 211 1122222 35789999999998 66676 68889999999987532 122 2
Q ss_pred CCcCeeEEEECCC-----------------CCeEEEEecCCCCCeEEEEEccCC---EEEEEeeCC--CceEEEECCCC-
Q 013871 235 GSGPYNTVRWNPK-----------------GKFLCLAGFGNLPGDMAFWDYVDG---KQLGTTRAE--CSVTSEWSPDG- 291 (434)
Q Consensus 235 ~~~~~~~i~~SP~-----------------g~~l~~~~~~~~~g~i~iwd~~~~---~~i~~~~~~--~~~~~~wspdg- 291 (434)
|...++++.|+|+ +++|++++ .+|.|++||++.. +.+..+.+| .+..++|+|++
T Consensus 149 h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs---~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~ 225 (316)
T 3bg1_A 149 HTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGG---CDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIG 225 (316)
T ss_dssp SSSCBCCCEECCCCCC------CCSCCCCCCCBEECCB---TTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSS
T ss_pred ccCCcceEEEccccCCccccccccccCccccceEEEec---CCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCC
Confidence 6778999999998 47888888 5679999999754 567777776 56679999997
Q ss_pred ---CEEEEEEcCCceeeCCcEEEEeecCc-------eeeeeecccceeeEEEcCCCCCCCC
Q 013871 292 ---RYFMTATTAPRLQIDNGIKIFHHNGS-------LFFKKMFDKLFQAEWKPVSPDKFGD 342 (434)
Q Consensus 292 ---~~l~tas~~prl~~D~~i~iw~~~g~-------~~~~~~~~~~~~~~w~p~~~~~~~~ 342 (434)
.+|++++. |+.|+||++... .+...+...++.++|+|++..++..
T Consensus 226 ~~~~~las~s~------D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~ 280 (316)
T 3bg1_A 226 LPTSTIASCSQ------DGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVS 280 (316)
T ss_dssp CSCCEEEEEET------TCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEE
T ss_pred CCCceEEEEcC------CCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEE
Confidence 89999999 999999998641 1223345679999999998877765
No 140
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.84 E-value=3.9e-19 Score=170.98 Aligned_cols=228 Identities=14% Similarity=0.225 Sum_probs=166.4
Q ss_pred eeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCC--CCeEEEEEEe
Q 013871 85 LYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRG--STGLLAVAQS 162 (434)
Q Consensus 85 ~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~--G~~l~~~~~~ 162 (434)
....|...|.+++|+|+ +..+++- +.++.|+||++.... ...+.....|...+..+.|+++ +..|+..
T Consensus 6 ~~~~h~~~v~~~~~s~~-~~~l~~~-----~~dg~i~iw~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~--- 75 (379)
T 3jrp_A 6 IANAHNELIHDAVLDYY-GKRLATC-----SSDKTIKIFEVEGET-HKLIDTLTGHEGPVWRVDWAHPKFGTILASC--- 75 (379)
T ss_dssp CEEECCCCEEEEEECSS-SSEEEEE-----ETTSCEEEEEEETTE-EEEEEEECCCSSCEEEEEECCGGGCSEEEEE---
T ss_pred EecCCcccEEEEEEcCC-CCEEEEE-----ECCCcEEEEecCCCc-ceeeeEecCCCCcEEEEEeCCCCCCCEEEEe---
Confidence 45667788999999998 5556542 456789999997321 4556667778889999999987 7776543
Q ss_pred cccccCceeecceeEEEEeeCCcc--eeeeecCCCCCeEEEEECcC--CCEEEEEEccCCCeEEEEecccc---eeE--E
Q 013871 163 DVDKTNQSYYGESKLNYLTTDGTH--EGLVPLRKEGPVHDVQWSYS--GSEFAVVYGFMPASATIFNKKCR---PIL--E 233 (434)
Q Consensus 163 ~~d~~~~~~~g~~~l~~l~~~~~~--~~~v~l~~~~~i~~v~wspd--g~~~av~~g~~~~~v~l~d~~~~---~~~--~ 233 (434)
..|...+ +|.+ .... .......+...|.+++|+|+ +..|+ ++..++.|.+||++.. ... .
T Consensus 76 ~~dg~v~-------iwd~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~--~~~~d~~i~v~d~~~~~~~~~~~~~ 144 (379)
T 3jrp_A 76 SYDGKVL-------IWKE--ENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLL--VASSDGKVSVVEFKENGTTSPIIID 144 (379)
T ss_dssp ETTSCEE-------EEEE--ETTEEEEEEEECCCSSCEEEEEECCGGGCSEEE--EEETTSEEEEEECCTTSCCCEEEEE
T ss_pred ccCCEEE-------EEEc--CCCceeEeeeecCCCcceEEEEeCCCCCCCEEE--EecCCCcEEEEecCCCCceeeEEec
Confidence 2343333 3333 2221 11222235789999999999 88888 4677899999999643 222 2
Q ss_pred eCCcCeeEEEECC-------------CCCeEEEEecCCCCCeEEEEEccCC----EEEEEeeCC--CceEEEECCC---C
Q 013871 234 LGSGPYNTVRWNP-------------KGKFLCLAGFGNLPGDMAFWDYVDG----KQLGTTRAE--CSVTSEWSPD---G 291 (434)
Q Consensus 234 ~~~~~~~~i~~SP-------------~g~~l~~~~~~~~~g~i~iwd~~~~----~~i~~~~~~--~~~~~~wspd---g 291 (434)
.+...++++.|+| ++++|++++ .+|.|++||+.++ ..+..+.+| .+..++|+|+ |
T Consensus 145 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~ 221 (379)
T 3jrp_A 145 AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGG---ADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLR 221 (379)
T ss_dssp CCTTCEEEEEECCCC----------CTTCEEEEEE---TTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSS
T ss_pred CCCCceEEEEEcCccccccccccCCCCCCEEEEEe---CCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCC
Confidence 3788999999999 699999998 5679999999865 345566655 5667999999 8
Q ss_pred CEEEEEEcCCceeeCCcEEEEeecCc------eeeee--ecccceeeEEEcCCCCCCCC
Q 013871 292 RYFMTATTAPRLQIDNGIKIFHHNGS------LFFKK--MFDKLFQAEWKPVSPDKFGD 342 (434)
Q Consensus 292 ~~l~tas~~prl~~D~~i~iw~~~g~------~~~~~--~~~~~~~~~w~p~~~~~~~~ 342 (434)
++|++++. |+.|+||++... .+... +...+..+.|.|++..++..
T Consensus 222 ~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~ 274 (379)
T 3jrp_A 222 SYLASVSQ------DRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALS 274 (379)
T ss_dssp EEEEEEET------TSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEE
T ss_pred CeEEEEeC------CCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEe
Confidence 99999999 999999999653 11111 44578999999999887764
No 141
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.84 E-value=1.6e-19 Score=189.92 Aligned_cols=315 Identities=10% Similarity=0.019 Sum_probs=190.5
Q ss_pred eEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC----------CeEE
Q 013871 4 LLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT----------NEIQ 73 (434)
Q Consensus 4 ~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~----------~~i~ 73 (434)
.++|||||+++++ + .|++|++||+.+|+....+..+......+.+++|||||++|+++.+ ++|+
T Consensus 20 ~~~~s~dg~~~~~-~-----~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~ 93 (719)
T 1z68_A 20 FPNWISGQEYLHQ-S-----ADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYY 93 (719)
T ss_dssp CCEESSSSEEEEE-C-----TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred ccEECCCCeEEEE-c-----CCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEE
Confidence 5789999977764 3 4789999999999876655443210113558999999999998754 6999
Q ss_pred EEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecc------------
Q 013871 74 FFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFR------------ 141 (434)
Q Consensus 74 v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~------------ 141 (434)
+||+..........+. ..+..++|||+ +..|++.. .+.|++|++.. +.... .+...
T Consensus 94 ~~d~~~g~~~~~~~l~-~~~~~~~~SPD-G~~la~~~------~~~i~~~~~~~---g~~~~-l~~~~~~~~v~~g~~~~ 161 (719)
T 1z68_A 94 IYDLSNGEFVRGNELP-RPIQYLCWSPV-GSKLAYVY------QNNIYLKQRPG---DPPFQ-ITFNGRENKIFNGIPDW 161 (719)
T ss_dssp EEETTTTEECCSSCCC-SSBCCEEECSS-TTCEEEEE------TTEEEEESSTT---SCCEE-CCCCCBTTTEEESSCCH
T ss_pred EEECCCCccccceecC-cccccceECCC-CCEEEEEE------CCeEEEEeCCC---CCcEE-EecCCCcCCeEcccccc
Confidence 9998764321002222 46888999999 55565532 24899999876 33322 11111
Q ss_pred -------cceeEEEECCCCCeEEEEEEecccccCcee------------------------ecceeEEEEeeCCccee--
Q 013871 142 -------CSTVQLNWNRGSTGLLAVAQSDVDKTNQSY------------------------YGESKLNYLTTDGTHEG-- 188 (434)
Q Consensus 142 -------~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~------------------------~g~~~l~~l~~~~~~~~-- 188 (434)
.....+.|||||+.|++....+. ....+ .....|+.+++.+....
T Consensus 162 v~~ee~~~~~~~~~wSPDG~~la~~~~d~~--~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~ 239 (719)
T 1z68_A 162 VYEEEMLATKYALWWSPNGKFLAYAEFNDT--DIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGP 239 (719)
T ss_dssp HHHHHTTCSSCCEEECTTSSEEEEEEEECT--TSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCC
T ss_pred eeeeecccCcccEEECCCCCEEEEEEECCC--CCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccce
Confidence 11147999999999887643211 11111 02235777777665321
Q ss_pred -eeec-----CCCCCeEEEEECcCCCEEEEEEccCC--CeEEEEe----ccccee---E----EeCCcCee-----EEEE
Q 013871 189 -LVPL-----RKEGPVHDVQWSYSGSEFAVVYGFMP--ASATIFN----KKCRPI---L----ELGSGPYN-----TVRW 244 (434)
Q Consensus 189 -~v~l-----~~~~~i~~v~wspdg~~~av~~g~~~--~~v~l~d----~~~~~~---~----~~~~~~~~-----~i~~ 244 (434)
.+.. .+.+.+.+++||||++.++....... ..|.+|| ..+... . ..+.+.+. .+.|
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (719)
T 1z68_A 240 QEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVF 319 (719)
T ss_dssp EECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEE
T ss_pred eEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEE
Confidence 1111 24567899999999754443222222 2588889 653322 2 22345555 7899
Q ss_pred CCCCCeEEEE-ecCCCCCeEEEEEccCCEEEEEeeCC-CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec---Cce-
Q 013871 245 NPKGKFLCLA-GFGNLPGDMAFWDYVDGKQLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN---GSL- 318 (434)
Q Consensus 245 SP~g~~l~~~-~~~~~~g~i~iwd~~~~~~i~~~~~~-~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~---g~~- 318 (434)
||||+.|++. +..+....|++||+.+++......+. .+..+.++ ||+.|+..+..- -..++.++||.+. |..
T Consensus 320 spdg~~l~~~~~~~~g~~~l~~~~~~~~~~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~-~~~~~~~~l~~~~~~~g~~~ 397 (719)
T 1z68_A 320 SYDAISYYKIFSDKDGYKHIHYIKDTVENAIQITSGKWEAINIFRV-TQDSLFYSSNEF-EEYPGRRNIYRISIGSYPPS 397 (719)
T ss_dssp CTTSSCEEEEEECTTSCEEEEEESSCSTTCEECSCSSSCEEEEEEE-CSSEEEEEESCG-GGCTTCBEEEEEECSSSSCC
T ss_pred CCCCCeEEEEEEccCCceEEEEEECCCCceEecccCceEEEEEEEE-eCCEEEEEEecC-CCCCceEEEEEEeCCCCCCC
Confidence 9999977663 32222347888898776533332322 34455666 999988888610 0002778999884 321
Q ss_pred eeee------ecccceeeEEEcCCCCCC
Q 013871 319 FFKK------MFDKLFQAEWKPVSPDKF 340 (434)
Q Consensus 319 ~~~~------~~~~~~~~~w~p~~~~~~ 340 (434)
.... +...+..+.|+|++..++
T Consensus 398 ~~~l~~~~~~~~~~~~~~~~s~dg~~l~ 425 (719)
T 1z68_A 398 KKCVTCHLRKERCQYYTASFSDYAKYYA 425 (719)
T ss_dssp EEESSTTTTTTTBCBEEEEECGGGSSEE
T ss_pred ceeccCccCCCCCceEEEEECCCCCEEE
Confidence 1111 112456788888876654
No 142
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.84 E-value=3.7e-17 Score=157.13 Aligned_cols=301 Identities=14% Similarity=0.122 Sum_probs=179.1
Q ss_pred EecCCCcEEEEEecCCCCCCCcEEEEEc--CCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC-----CeEEEEeCC
Q 013871 6 TCLRVGLIIQTFQKSSTPQEKNVILWKT--ETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT-----NEIQFFDTT 78 (434)
Q Consensus 6 ~fSP~g~~L~t~~~~~~~~d~~v~iWd~--~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~-----~~i~v~~~~ 78 (434)
...+...+|...+ +....++.|.+|++ .+|+......... .....++|||||++|+++.. +.|.+|++.
T Consensus 8 ~~~~~~~~~~vg~-y~~~~~~~i~~~~~d~~~g~~~~~~~~~~---~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~ 83 (361)
T 3scy_A 8 STTDSELTMLVGT-YTSGNSKGIYTFRFNEETGESLPLSDAEV---ANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFD 83 (361)
T ss_dssp CGGGGEEEEEEEE-CCSSSCCEEEEEEEETTTCCEEEEEEEEC---SCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEE
T ss_pred hhCCCceEEEEEe-ccCCCCCCEEEEEEeCCCCCEEEeecccC---CCCceEEECCCCCEEEEEEccCCCCCcEEEEEEe
Confidence 3445445555444 44445788999966 5675433222111 33447899999998888754 599999876
Q ss_pred CC-CCc-eeeeee--cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeec-----------ccc
Q 013871 79 DF-PKG-ILYRLR--VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFF-----------RCS 143 (434)
Q Consensus 79 ~~-~~~-~~~~~~--~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~-----------~~~ 143 (434)
.. ... ...... ......+++ + +..+.+.. ...+.|.+|++.....-..+.....+ ...
T Consensus 84 ~~~g~~~~~~~~~~~~~~p~~~~~--d-g~~l~~~~----~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~ 156 (361)
T 3scy_A 84 KEKGTLHLLNTQKTMGADPCYLTT--N-GKNIVTAN----YSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPH 156 (361)
T ss_dssp TTTTEEEEEEEEECSSSCEEEEEE--C-SSEEEEEE----TTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCC
T ss_pred CCCCcEEEeeEeccCCCCcEEEEE--C-CCEEEEEE----CCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCc
Confidence 53 111 112222 223455555 4 44443322 23468999998752111111111111 112
Q ss_pred eeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCc------c-----eeeeecCCCCCeEEEEECcCCCEEEE
Q 013871 144 TVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGT------H-----EGLVPLRKEGPVHDVQWSYSGSEFAV 212 (434)
Q Consensus 144 ~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~------~-----~~~v~l~~~~~i~~v~wspdg~~~av 212 (434)
...+.|+|+|++|++... .+ +...+|.++..+. . .....+........++|+|||+++++
T Consensus 157 ~~~~~~spdg~~l~~~~~--~~-------~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v 227 (361)
T 3scy_A 157 LHCVRITPDGKYLLADDL--GT-------DQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYL 227 (361)
T ss_dssp EEEEEECTTSSEEEEEET--TT-------TEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEE
T ss_pred ceEEEECCCCCEEEEEeC--CC-------CEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEE
Confidence 256899999998766421 11 1112344433221 0 02233444556789999999998876
Q ss_pred EEccCCCeEEEEeccccee---EEe-----CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEcc--CCE--EEEEeeC-
Q 013871 213 VYGFMPASATIFNKKCRPI---LEL-----GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV--DGK--QLGTTRA- 279 (434)
Q Consensus 213 ~~g~~~~~v~l~d~~~~~~---~~~-----~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~--~~~--~i~~~~~- 279 (434)
. +..++.|.+||+....+ ..+ +......++|||||++|+++..+ .++.|.+|+++ +++ .+..+..
T Consensus 228 ~-~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~-~~~~i~v~~~~~~~g~~~~~~~~~~g 305 (361)
T 3scy_A 228 I-NEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRL-KADGVAIFKVDETNGTLTKVGYQLTG 305 (361)
T ss_dssp E-ETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECS-SSCEEEEEEECTTTCCEEEEEEEECS
T ss_pred E-cCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCC-CCCEEEEEEEcCCCCcEEEeeEecCC
Confidence 4 55678999999864432 222 12335689999999999887754 13689999985 443 4444443
Q ss_pred CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec---Cceeee---eecccceeeEEE
Q 013871 280 ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN---GSLFFK---KMFDKLFQAEWK 333 (434)
Q Consensus 280 ~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~---g~~~~~---~~~~~~~~~~w~ 333 (434)
..+..++|+|||++|+++... ++.|.+|+++ |++... .+.....++.|.
T Consensus 306 ~~~~~~~~spdg~~l~~~~~~-----~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 306 IHPRNFIITPNGKYLLVACRD-----TNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp SCCCEEEECTTSCEEEEEETT-----TTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred CCCceEEECCCCCEEEEEECC-----CCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence 356679999999999999853 7899998774 544332 234556667664
No 143
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.84 E-value=3.2e-19 Score=165.09 Aligned_cols=230 Identities=12% Similarity=0.027 Sum_probs=153.9
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCC-CcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC-----CeEEEE
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTET-GEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT-----NEIQFF 75 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~-g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~-----~~i~v~ 75 (434)
|.+++|||||++|++.+ ++.|.+||+.+ ++....+... +...+.+++|+||+++|+++.. ..|.++
T Consensus 44 v~~~~~spdg~~l~~~~------~~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~ 115 (297)
T 2ojh_A 44 FEAPNWSPDGKYLLLNS------EGLLYRLSLAGDPSPEKVDTGF--ATICNNDHGISPDGALYAISDKVEFGKSAIYLL 115 (297)
T ss_dssp CEEEEECTTSSEEEEEE------TTEEEEEESSSCCSCEECCCTT--CCCBCSCCEECTTSSEEEEEECTTTSSCEEEEE
T ss_pred eEeeEECCCCCEEEEEc------CCeEEEEeCCCCCCceEecccc--ccccccceEECCCCCEEEEEEeCCCCcceEEEE
Confidence 67899999999999865 57899999999 8765544332 1245668999999999998862 355555
Q ss_pred eCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCe
Q 013871 76 DTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTG 155 (434)
Q Consensus 76 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~ 155 (434)
+...... . .-.....+..+.|+|+ +..+++... ..+.++||.+... .........+......+.|+|+|+.
T Consensus 116 ~~~~~~~-~-~~~~~~~~~~~~~spd-g~~l~~~~~----~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~s~dg~~ 186 (297)
T 2ojh_A 116 PSTGGTP-R-LMTKNLPSYWHGWSPD-GKSFTYCGI----RDQVFDIYSMDID--SGVETRLTHGEGRNDGPDYSPDGRW 186 (297)
T ss_dssp ETTCCCC-E-ECCSSSSEEEEEECTT-SSEEEEEEE----ETTEEEEEEEETT--TCCEEECCCSSSCEEEEEECTTSSE
T ss_pred ECCCCce-E-EeecCCCccceEECCC-CCEEEEEEC----CCCceEEEEEECC--CCcceEcccCCCccccceECCCCCE
Confidence 5544221 1 1122335888899999 455543221 2356788887532 3344445555667789999999998
Q ss_pred EEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEcc---------CCCeEEEEec
Q 013871 156 LLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGF---------MPASATIFNK 226 (434)
Q Consensus 156 l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~---------~~~~v~l~d~ 226 (434)
|++.... + +...||.++..+.....+ ......+..++|+|+|+++++.+.. .+..+.+||+
T Consensus 187 l~~~~~~--~-------~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~ 256 (297)
T 2ojh_A 187 IYFNSSR--T-------GQMQIWRVRVDGSSVERI-TDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDM 256 (297)
T ss_dssp EEEEECT--T-------SSCEEEEEETTSSCEEEC-CCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEET
T ss_pred EEEEecC--C-------CCccEEEECCCCCCcEEE-ecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEec
Confidence 8765321 2 223467776555432222 2234678899999999999876543 2257999999
Q ss_pred ccce---eEEe--CCcCeeEEEECCCCCeEEEEecCC
Q 013871 227 KCRP---ILEL--GSGPYNTVRWNPKGKFLCLAGFGN 258 (434)
Q Consensus 227 ~~~~---~~~~--~~~~~~~i~~SP~g~~l~~~~~~~ 258 (434)
++.. +..+ +...+..+.|+|+|++|++++.+.
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 257 DGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp TSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred CCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 7543 3332 567889999999999999887654
No 144
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.84 E-value=9.5e-20 Score=174.30 Aligned_cols=243 Identities=10% Similarity=0.082 Sum_probs=157.7
Q ss_pred eecCCCcEEEEe-cCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCC------
Q 013871 56 RFSSDEAVACRM-ATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKD------ 128 (434)
Q Consensus 56 ~~S~d~~~la~~-~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~------ 128 (434)
.+.+|+.+|+++ .|+.|++||+.+.... ..+....|..+.++|. ++. .+.++.|++|+....
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~--~~~~~~~v~~~~~~~~----~~s-----~s~D~~i~~w~~~~~~~~~~~ 111 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTI--TTITTPNPRTGGEHPA----IIS-----RGPCNRLLLLYPGNQITILDS 111 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCE--EEEEEECCCTTCCCCS----EEE-----ECSTTEEEEEETTTEEEEEET
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEE--EEEecCCceeeeeCCc----eEE-----ecCCCeEEEEEccCceEEeec
Confidence 456788889888 5789999999875532 3333455666667765 221 244567777765421
Q ss_pred CCCCceeeee-ecccceeEEEECC--CCCeEEEEEEecccccCceeecceeEEEEeeCCcceeee-ecCCCCCeEEEEEC
Q 013871 129 LQSQPLARRS-FFRCSTVQLNWNR--GSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLV-PLRKEGPVHDVQWS 204 (434)
Q Consensus 129 ~~~~~i~~~~-~~~~~~~~~~ws~--~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v-~l~~~~~i~~v~ws 204 (434)
...+.+.... .+...+..+.|+| +|+.++.. ..|.+.+ ++++.......+ .......|.+++|+
T Consensus 112 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~---s~dg~i~---------~wd~~~~~~~~~~~~~~~~~i~~~~~~ 179 (343)
T 3lrv_A 112 KTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWA---DNRGTIG---------FQSYEDDSQYIVHSAKSDVEYSSGVLH 179 (343)
T ss_dssp TTCCEEEEEECCCSSCEEEEECCC---CCEEEEE---ETTCCEE---------EEESSSSCEEEEECCCSSCCCCEEEEC
T ss_pred CCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEE---eCCCcEE---------EEECCCCcEEEEEecCCCCceEEEEEC
Confidence 0033233322 3346788999999 99886543 2444433 233333222111 12235679999999
Q ss_pred cCCCEEEEEEccCCCeEEEEecccce-e---EEe-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC
Q 013871 205 YSGSEFAVVYGFMPASATIFNKKCRP-I---LEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA 279 (434)
Q Consensus 205 pdg~~~av~~g~~~~~v~l~d~~~~~-~---~~~-~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~ 279 (434)
|+|..|+ +|..++.|++||++... + ... |.+++++++|+|+|++|++++ + +.|++||+++++.+..+..
T Consensus 180 pdg~~la--sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~---~~v~iwd~~~~~~~~~~~~ 253 (343)
T 3lrv_A 180 KDSLLLA--LYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-D---QTVVCFDLRKDVGTLAYPT 253 (343)
T ss_dssp TTSCEEE--EECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-S---SBEEEEETTSSTTCBSSCC
T ss_pred CCCCEEE--EEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-C---CeEEEEEcCCCCcceeecc
Confidence 9999988 58889999999996432 2 233 689999999999999999998 3 2899999998765544332
Q ss_pred ---C--Cc--eEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc-eeeeeecccceeeEEEc
Q 013871 280 ---E--CS--VTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS-LFFKKMFDKLFQAEWKP 334 (434)
Q Consensus 280 ---~--~~--~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~-~~~~~~~~~~~~~~w~p 334 (434)
+ .+ ..++|+|+|++|++++.. |+.++||++... ..... ..+..+.|.|
T Consensus 254 ~~~~~~~~~~~~~~~~~~g~~l~~~s~~-----d~~i~v~~~~~~~~~~~~--~~~~~~~~~~ 309 (343)
T 3lrv_A 254 YTIPEFKTGTVTYDIDDSGKNMIAYSNE-----SNSLTIYKFDKKTKNWTK--DEESALCLQS 309 (343)
T ss_dssp CBC-----CCEEEEECTTSSEEEEEETT-----TTEEEEEEECTTTCSEEE--EEEEECCC--
T ss_pred cccccccccceEEEECCCCCEEEEecCC-----CCcEEEEEEcccccceEe--cCceeEecCc
Confidence 1 11 359999999999998865 889999999543 11111 3455566776
No 145
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.84 E-value=8e-19 Score=166.08 Aligned_cols=210 Identities=18% Similarity=0.288 Sum_probs=140.1
Q ss_pred cceEEecC--CCcEEEEEecCCCCCCCcEEEEEcCCC---------cEEEEEeecCcCCCCCCeeeecCC--CcEEEEe-
Q 013871 2 LLLLTCLR--VGLIIQTFQKSSTPQEKNVILWKTETG---------EAVYQLFQKNMTKTTWPSIRFSSD--EAVACRM- 67 (434)
Q Consensus 2 V~~l~fSP--~g~~L~t~~~~~~~~d~~v~iWd~~~g---------~~~~~~~~~~~~~~~~~~~~~S~d--~~~la~~- 67 (434)
|.+|+|+| ||++|++++ .|+.|+|||+.++ +.+..+..+ ...+.+++|+|+ +.+|+++
T Consensus 60 v~~~~~~~~~d~~~l~s~~-----~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~l~~~~ 131 (351)
T 3f3f_A 60 IVAIDWASPEYGRIIASAS-----YDKTVKLWEEDPDQEECSGRRWNKLCTLNDS---KGSLYSVKFAPAHLGLKLACLG 131 (351)
T ss_dssp EEEEEECCGGGCSEEEEEE-----TTSCEEEEEECTTSCTTSSCSEEEEEEECCC---SSCEEEEEECCGGGCSEEEEEE
T ss_pred EEEEEEcCCCCCCEEEEEc-----CCCeEEEEecCCCcccccccCcceeeeeccc---CCceeEEEEcCCCCCcEEEEec
Confidence 78999999 699999999 8999999999887 445565543 366779999999 9988887
Q ss_pred cCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEE
Q 013871 68 ATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQL 147 (434)
Q Consensus 68 ~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~ 147 (434)
.++.|++||+..........+.. .+..+.+.+ ..+...+..+
T Consensus 132 ~dg~v~iwd~~~~~~~~~~~~~~-~~~~~~~~~-------------------------------------~~~~~~~~~~ 173 (351)
T 3f3f_A 132 NDGILRLYDALEPSDLRSWTLTS-EMKVLSIPP-------------------------------------ANHLQSDFCL 173 (351)
T ss_dssp TTCEEEEEECSSTTCTTCCEEEE-EEESCSCCC-------------------------------------SSCSCCCEEE
T ss_pred CCCcEEEecCCChHHhccccccc-ccccccccc-------------------------------------CCcccceeEE
Confidence 46899999987754322111100 000000000 0122345577
Q ss_pred EECCC---CCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeec-CCCCCeEEEEECcCC----CEEEEEEccCCC
Q 013871 148 NWNRG---STGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL-RKEGPVHDVQWSYSG----SEFAVVYGFMPA 219 (434)
Q Consensus 148 ~ws~~---G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l-~~~~~i~~v~wspdg----~~~av~~g~~~~ 219 (434)
.|+|+ +..+++.. .+... ++.....+.......+ .+.++|.+++|+|++ +.|+ ++..|+
T Consensus 174 ~~~p~~~~~~~l~~~~---~~~~~--------~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~--s~~~dg 240 (351)
T 3f3f_A 174 SWCPSRFSPEKLAVSA---LEQAI--------IYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIA--TGCKDG 240 (351)
T ss_dssp EECCCSSSCCEEEEEE---TTEEE--------EEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEE--EEETTS
T ss_pred EeccCCCCCcEEEEec---CCCcE--------EEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEE--EEcCCC
Confidence 88886 66554432 11111 1111111111112222 247899999999998 4555 578899
Q ss_pred eEEEEeccc-----------------------------------------------ceeEEe--CCcCeeEEEECCCCCe
Q 013871 220 SATIFNKKC-----------------------------------------------RPILEL--GSGPYNTVRWNPKGKF 250 (434)
Q Consensus 220 ~v~l~d~~~-----------------------------------------------~~~~~~--~~~~~~~i~~SP~g~~ 250 (434)
.|++||++. ..+..+ |...+++++|+|+|++
T Consensus 241 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~ 320 (351)
T 3f3f_A 241 RIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTI 320 (351)
T ss_dssp CEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCC
T ss_pred eEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCE
Confidence 999999864 233334 6789999999999999
Q ss_pred EEEEecCCCCCeEEEEEccCCEE
Q 013871 251 LCLAGFGNLPGDMAFWDYVDGKQ 273 (434)
Q Consensus 251 l~~~~~~~~~g~i~iwd~~~~~~ 273 (434)
|++++ .+|.|+|||+.+++.
T Consensus 321 l~s~~---~dg~v~iw~~~~~~~ 340 (351)
T 3f3f_A 321 LSSAG---DDGKVRLWKATYSNE 340 (351)
T ss_dssp EEEEE---TTSCEEEEEECTTSC
T ss_pred EEEec---CCCcEEEEecCcCcc
Confidence 99999 667999999997743
No 146
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.84 E-value=3.2e-19 Score=173.06 Aligned_cols=291 Identities=10% Similarity=0.003 Sum_probs=170.5
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC-CeEEEEeCCCC
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT-NEIQFFDTTDF 80 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~-~~i~v~~~~~~ 80 (434)
+..++|||||++|+..... ..+..|.+||+.+++... +.... ......+.|||||++|++... +.|.+|++...
T Consensus 38 ~~~~~~SpdG~~l~~~~~~--~g~~~l~~~d~~~~~~~~-l~~~~--~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~ 112 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDF--DGNRNYYLLNLETQQAVQ-LTEGK--GDNTFGGFISTDERAFFYVKNELNLMKVDLETL 112 (396)
T ss_dssp TTSCCBCTTSCEEEEEECT--TSSCEEEEEETTTTEEEE-CCCSS--CBCTTTCEECTTSSEEEEEETTTEEEEEETTTC
T ss_pred eecCcCCCCCCEEEEEEec--CCCceEEEEECCCCcEEE-eecCC--CCccccceECCCCCEEEEEEcCCcEEEEECCCC
Confidence 5678899999999887632 123579999998887543 32221 122324789999999988754 58999998764
Q ss_pred CCceeeeeecCCeeE-------------------EEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecc
Q 013871 81 PKGILYRLRVPGVAA-------------------FEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFR 141 (434)
Q Consensus 81 ~~~~~~~~~~~~v~~-------------------~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~ 141 (434)
........+...... +.|+|++ ..+++...........|.+|++.. ++. .......
T Consensus 113 ~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg-~~~~~~~~~~~~~~~~l~~~d~~~---g~~-~~~~~~~ 187 (396)
T 3c5m_A 113 EEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLT-SWEKFAEFYHTNPTCRLIKVDIET---GEL-EVIHQDT 187 (396)
T ss_dssp CEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCC-SHHHHHHHHHTCCCEEEEEEETTT---CCE-EEEEEES
T ss_pred CcEEEEecccccCCCCCEEEeccCCccccccccccccCCCC-cceeeeeeccCCCcceEEEEECCC---CcE-EeeccCC
Confidence 421111111111111 1233432 111110000013445788888865 333 2233344
Q ss_pred cceeEEEECC-CCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCC-CCCeEEEEECcCCCEEEEEEccC-C
Q 013871 142 CSTVQLNWNR-GSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK-EGPVHDVQWSYSGSEFAVVYGFM-P 218 (434)
Q Consensus 142 ~~~~~~~ws~-~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~-~~~i~~v~wspdg~~~av~~g~~-~ 218 (434)
.....+.|+| +|..|+++... .... ....|+.++..+.....+.... ...+..++|+|||+.+++++... .
T Consensus 188 ~~~~~~~~sp~dg~~l~~~~~~---~~~~---~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~ 261 (396)
T 3c5m_A 188 AWLGHPIYRPFDDSTVGFCHEG---PHDL---VDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQ 261 (396)
T ss_dssp SCEEEEEEETTEEEEEEEEECS---CSSS---CSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTT
T ss_pred cccccceECCCCCCEEEEEecC---CCCC---CCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCC
Confidence 5567889999 88887776421 1100 0124777776554322222111 22477899999999888653321 1
Q ss_pred --CeEEEEecccceeEEeC-CcCeeEEEECC-CCCeEEEEecC-------------CCCCeEEEEEccCCEEEEEeeCCC
Q 013871 219 --ASATIFNKKCRPILELG-SGPYNTVRWNP-KGKFLCLAGFG-------------NLPGDMAFWDYVDGKQLGTTRAEC 281 (434)
Q Consensus 219 --~~v~l~d~~~~~~~~~~-~~~~~~i~~SP-~g~~l~~~~~~-------------~~~g~i~iwd~~~~~~i~~~~~~~ 281 (434)
..|.+||+.......+. ..... +.|+| ||++|++++.+ ..++.|++||+.+++.........
T Consensus 262 ~~~~l~~~d~~~g~~~~l~~~~~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~ 340 (396)
T 3c5m_A 262 TDRVIYKANPETLENEEVMVMPPCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHST 340 (396)
T ss_dssp CCEEEEEECTTTCCEEEEEECCSEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCEEEECCC
T ss_pred ccceEEEEECCCCCeEEeeeCCCCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEccCCCC
Confidence 24999999754433331 11234 89999 99988876532 123689999998875433322222
Q ss_pred ------------ceEEEECCCCCEEEEEEcCCceeeCCcEEEEee
Q 013871 282 ------------SVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH 314 (434)
Q Consensus 282 ------------~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~ 314 (434)
...+.|+|||++|++++.. ++...||.+
T Consensus 341 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~-----~~~~~l~~~ 380 (396)
T 3c5m_A 341 SWDVLDGDRQITHPHPSFTPNDDGVLFTSDF-----EGVPAIYIA 380 (396)
T ss_dssp CCCCBTTBSSTTCCCCEECTTSSEEEEEECT-----TSSCEEEEE
T ss_pred ccccccccccCCCCCceEccCCCeEEEEecC-----CCCceEEEE
Confidence 3458999999999988863 455556554
No 147
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.83 E-value=6.7e-18 Score=160.67 Aligned_cols=276 Identities=10% Similarity=0.059 Sum_probs=172.5
Q ss_pred ceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe--cCCeEEEEeCCCC
Q 013871 3 LLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM--ATNEIQFFDTTDF 80 (434)
Q Consensus 3 ~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~--~~~~i~v~~~~~~ 80 (434)
+.++|+++++++++.+ .++.|.+||+.+++.+..+..... .....++|+||+++++.. .++.|.+||+.+.
T Consensus 3 ~g~~~~~~~~~~v~~~-----~~~~v~~~d~~~~~~~~~~~~~~~--~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~ 75 (349)
T 1jmx_B 3 TGPALKAGHEYMIVTN-----YPNNLHVVDVASDTVYKSCVMPDK--FGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTC 75 (349)
T ss_dssp -CCCCCTTCEEEEEEE-----TTTEEEEEETTTTEEEEEEECSSC--CSSCEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred ccccccCCCEEEEEeC-----CCCeEEEEECCCCcEEEEEecCCC--CCCceeEECCCCCEEEEEeCCCCcEEEEeCCCC
Confidence 3578999999999988 789999999999998888765421 134589999999866544 3579999998764
Q ss_pred CCceeeeeecC--------CeeEEEEeCCCCCeEEEEecC-------CCCCCceEEEEEcCCCCCCCceeeeeeccccee
Q 013871 81 PKGILYRLRVP--------GVAAFEVSKAPGSHVAVFVPE-------SKGSPASVQIYACGKDLQSQPLARRSFFRCSTV 145 (434)
Q Consensus 81 ~~~~~~~~~~~--------~v~~~~~sp~~~~~ia~~~~~-------~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~ 145 (434)
.. ...+... .+..++|+|+ +..+++.... .....+.|.+|++.+......+.... ......
T Consensus 76 ~~--~~~~~~~~~~~~~~~~~~~~~~spd-g~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~ 151 (349)
T 1jmx_B 76 KN--TFHANLSSVPGEVGRSMYSFAISPD-GKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVY 151 (349)
T ss_dssp EE--EEEEESCCSTTEEEECSSCEEECTT-SSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCC
T ss_pred cE--EEEEEcccccccccccccceEECCC-CCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCccc
Confidence 32 2233322 2678999999 4455443211 00113689999987621111122222 222456
Q ss_pred EEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcc-eeeeecCCCC-----------------------CeEEE
Q 013871 146 QLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH-EGLVPLRKEG-----------------------PVHDV 201 (434)
Q Consensus 146 ~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~-~~~v~l~~~~-----------------------~i~~v 201 (434)
.+.|+|+|+ +++. +. .++.++..... ...++....+ ....+
T Consensus 152 ~~~~s~dg~-l~~~-~~-------------~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (349)
T 1jmx_B 152 LMRAADDGS-LYVA-GP-------------DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTI 216 (349)
T ss_dssp CEEECTTSC-EEEE-SS-------------SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEE
T ss_pred ceeECCCCc-EEEc-cC-------------cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeee
Confidence 788999999 5442 11 14445443321 1112211100 23456
Q ss_pred EECcCCCEE---------EEEEccCCCeEEEEecccceeEEeCCcCeeEEEECC-CCCeEEEEecCCCCCeEEEEEccCC
Q 013871 202 QWSYSGSEF---------AVVYGFMPASATIFNKKCRPILELGSGPYNTVRWNP-KGKFLCLAGFGNLPGDMAFWDYVDG 271 (434)
Q Consensus 202 ~wspdg~~~---------av~~g~~~~~v~l~d~~~~~~~~~~~~~~~~i~~SP-~g~~l~~~~~~~~~g~i~iwd~~~~ 271 (434)
++++++... .+......+++.+++... .......++|+| +|++++++ ++.|.+||+.++
T Consensus 217 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~sp~dg~~l~~~-----~~~v~~~d~~~~ 285 (349)
T 1jmx_B 217 ARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFAD------LTELYFTGLRSPKDPNQIYGV-----LNRLAKYDLKQR 285 (349)
T ss_dssp EEC-------CCCEEEEEEEEEETTTCCEEEEEEEE------CSSCEEEEEECSSCTTEEEEE-----ESEEEEEETTTT
T ss_pred eecCCCcCCccccccceeEEEEeccCCcEEeccccc------CCCcceeeEecCCCCCEEEEE-----cCeEEEEECccC
Confidence 677655221 111223334455444421 345677899999 99999887 258999999999
Q ss_pred EEEEEeeC-CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec-Cceeee
Q 013871 272 KQLGTTRA-ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLFFK 321 (434)
Q Consensus 272 ~~i~~~~~-~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~-g~~~~~ 321 (434)
+.+..+.. +.+..++|+|||++|++++. ++.|++||.. ++.+..
T Consensus 286 ~~~~~~~~~~~~~~~~~s~dg~~l~~~~~------~~~v~v~d~~~~~~~~~ 331 (349)
T 1jmx_B 286 KLIKAANLDHTYYCVAFDKKGDKLYLGGT------FNDLAVFNPDTLEKVKN 331 (349)
T ss_dssp EEEEEEECSSCCCEEEECSSSSCEEEESB------SSEEEEEETTTTEEEEE
T ss_pred eEEEEEcCCCCccceEECCCCCEEEEecC------CCeEEEEeccccceeee
Confidence 88877754 35667999999999998766 8999999995 444443
No 148
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.83 E-value=5.7e-19 Score=185.65 Aligned_cols=296 Identities=10% Similarity=-0.015 Sum_probs=180.7
Q ss_pred cceEEecCCCcEEEEEecCCC----CCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeC
Q 013871 2 LLLLTCLRVGLIIQTFQKSST----PQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDT 77 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~----~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~ 77 (434)
|.+++|||||++|++.+...+ ..++.|+|||+.+|+.+...... ..+..++|||||++||++.+++|++|++
T Consensus 62 ~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~----~~~~~~~~SPDG~~la~~~~~~i~~~~~ 137 (719)
T 1z68_A 62 ASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNELP----RPIQYLCWSPVGSKLAYVYQNNIYLKQR 137 (719)
T ss_dssp CSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCC----SSBCCEEECSSTTCEEEEETTEEEEESS
T ss_pred eeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceecC----cccccceECCCCCEEEEEECCeEEEEeC
Confidence 678999999999998773110 12689999999998763111111 2344799999999999999999999998
Q ss_pred CCCCCceee-eeec-----------------CCeeEEEEeCCCCCeEEEEecCCC-------------------------
Q 013871 78 TDFPKGILY-RLRV-----------------PGVAAFEVSKAPGSHVAVFVPESK------------------------- 114 (434)
Q Consensus 78 ~~~~~~~~~-~~~~-----------------~~v~~~~~sp~~~~~ia~~~~~~~------------------------- 114 (434)
......... ..+. .....+.|||+ +..|++...+..
T Consensus 138 ~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPD-G~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~ 216 (719)
T 1z68_A 138 PGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPN-GKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPK 216 (719)
T ss_dssp TTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTT-SSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCB
T ss_pred CCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCC-CCEEEEEEECCCCCceEEeeccCCCCCccceeecCCC
Confidence 764321111 0000 11247999999 566665533211
Q ss_pred ----CCCceEEEEEcCCCCCCCce--ee------eeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEe-
Q 013871 115 ----GSPASVQIYACGKDLQSQPL--AR------RSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLT- 181 (434)
Q Consensus 115 ----~~~~~v~i~~~~~~~~~~~i--~~------~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~- 181 (434)
.....|.+|++.+ +..+ .. ...+......+.|+|||+ +++......+ +...|+.++
T Consensus 217 ~g~~~~~~~l~~~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~-~~~~~~~~~~-------~~~~l~~~d~ 285 (719)
T 1z68_A 217 AGAKNPVVRIFIIDTTY---PAYVGPQEVPVPAMIASSDYYFSWLTWVTDER-VCLQWLKRVQ-------NVSVLSICDF 285 (719)
T ss_dssp TTSCCCEEEEEEEESSC---HHHHCCEECCCCHHHHTSCEEEEEEEESSSSE-EEEEEEESST-------TEEEEEEEEE
T ss_pred CCCCCCeeEEEEEECCC---CCccceeEccCCccCCCCcceEEEeEEeCCCe-EEEEEecccc-------CeEEEEEEcc
Confidence 1223788899876 3321 01 112344567899999975 4443322111 123467777
Q ss_pred ---eCCcceeeee----cCCCCCeE-----EEEECcCCCEEEEEEccCCC--eEEEEecccceeEEeC--CcCeeEEEEC
Q 013871 182 ---TDGTHEGLVP----LRKEGPVH-----DVQWSYSGSEFAVVYGFMPA--SATIFNKKCRPILELG--SGPYNTVRWN 245 (434)
Q Consensus 182 ---~~~~~~~~v~----l~~~~~i~-----~v~wspdg~~~av~~g~~~~--~v~l~d~~~~~~~~~~--~~~~~~i~~S 245 (434)
..++....+. ..+.+.+. .++|+|||+.++++....++ .|.+||+.+.....+. ...+..+.++
T Consensus 286 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~~~lt~~~~~v~~~~~~ 365 (719)
T 1z68_A 286 REDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENAIQITSGKWEAINIFRV 365 (719)
T ss_dssp CSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTCEECSCSSSCEEEEEEE
T ss_pred cCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCceEecccCceEEEEEEEE
Confidence 5444222221 12345555 78999999988875555455 6777888765555553 3446677777
Q ss_pred CCCCeEEEEecC--CCCCeEEEEEccC--CE-EEEEeeC----C--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEee
Q 013871 246 PKGKFLCLAGFG--NLPGDMAFWDYVD--GK-QLGTTRA----E--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH 314 (434)
Q Consensus 246 P~g~~l~~~~~~--~~~g~i~iwd~~~--~~-~i~~~~~----~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~ 314 (434)
+|+.|+..+.+ ..++.+.+|.+.. +. ....+.. + ....+.|||||++|+.....+. ...+.+|+.
T Consensus 366 -d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~---~p~~~l~d~ 441 (719)
T 1z68_A 366 -TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPG---IPISTLHDG 441 (719)
T ss_dssp -CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBS---SCEEEEECS
T ss_pred -eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCC---CCeEEEEEC
Confidence 88888877754 2246778887653 31 1222221 2 4456899999999887655432 135777877
Q ss_pred -cCc
Q 013871 315 -NGS 317 (434)
Q Consensus 315 -~g~ 317 (434)
+|+
T Consensus 442 ~~g~ 445 (719)
T 1z68_A 442 RTDQ 445 (719)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 444
No 149
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.83 E-value=4.8e-17 Score=155.38 Aligned_cols=264 Identities=9% Similarity=0.062 Sum_probs=160.8
Q ss_pred CCCcEEEEEc--CCCcEEE-EEeecCcCCCCCCeeeecCCCcEEEEec---CCeEEEEeCCCCCCceeee--eecCCeeE
Q 013871 24 QEKNVILWKT--ETGEAVY-QLFQKNMTKTTWPSIRFSSDEAVACRMA---TNEIQFFDTTDFPKGILYR--LRVPGVAA 95 (434)
Q Consensus 24 ~d~~v~iWd~--~~g~~~~-~~~~~~~~~~~~~~~~~S~d~~~la~~~---~~~i~v~~~~~~~~~~~~~--~~~~~v~~ 95 (434)
.++.|.+|++ .+|+... ...... .....++|||||++++... ++.|.+|++.......... .+...+..
T Consensus 14 ~~~~i~v~~~d~~tg~~~~~~~~~~~---~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~ 90 (347)
T 3hfq_A 14 TSQGIYQGTLDTTAKTLTNDGLLAAT---QNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAY 90 (347)
T ss_dssp SCCEEEEEEEETTTTEEEEEEEEEEC---SCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSE
T ss_pred CCCCEEEEEEcCCCCeEEEeeeeecc---CCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEE
Confidence 4567777765 4565432 222211 3334689999999444443 3699999986533211112 23556888
Q ss_pred EEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeec---------ccceeEEEECCCCCeEEEEEEecccc
Q 013871 96 FEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFF---------RCSTVQLNWNRGSTGLLAVAQSDVDK 166 (434)
Q Consensus 96 ~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~---------~~~~~~~~ws~~G~~l~~~~~~~~d~ 166 (434)
++|+|++ ..+.+.. ...+.|.+|++........+...... ......+.|+|+|+ +++. .. .+
T Consensus 91 ~a~spdg-~~l~~~~----~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~-~~-~~- 161 (347)
T 3hfq_A 91 VAVDEAR-QLVYSAN----YHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVI-DL-GS- 161 (347)
T ss_dssp EEEETTT-TEEEEEE----TTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEE-ET-TT-
T ss_pred EEECCCC-CEEEEEe----CCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEE-eC-CC-
Confidence 9999994 4443322 23468999999642101222222111 11255699999999 5442 21 11
Q ss_pred cCceeecceeEEEEeeC--Cccee--eeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc--ce---eEEeC--
Q 013871 167 TNQSYYGESKLNYLTTD--GTHEG--LVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC--RP---ILELG-- 235 (434)
Q Consensus 167 ~~~~~~g~~~l~~l~~~--~~~~~--~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~--~~---~~~~~-- 235 (434)
..++.+++. +.... .+..........++|+|||+++++. +..++.+.+|++.. .. +..+.
T Consensus 162 --------~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~-~~~~~~v~v~~~~~~~g~~~~~~~~~~~ 232 (347)
T 3hfq_A 162 --------DKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLA-GELSSQIASLKYDTQTGAFTQLGIVKTI 232 (347)
T ss_dssp --------TEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEE-ETTTTEEEEEEEETTTTEEEEEEEEESS
T ss_pred --------CEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEE-eCCCCEEEEEEecCCCCceEEeeeeeec
Confidence 123444433 21111 1122233467789999999987764 56678999998752 22 22221
Q ss_pred C------cCeeEEEECCCCCeEEEEecCCCCCeEEEEEcc---CCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCcee
Q 013871 236 S------GPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV---DGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQ 304 (434)
Q Consensus 236 ~------~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~---~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~prl~ 304 (434)
. .....++|||||++|+++..+ ++.|.+||+. ..+.+..+..+ .+..++|+|||++|+++...
T Consensus 233 ~~~~~~~~~~~~i~~spdG~~l~v~~~~--~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~---- 306 (347)
T 3hfq_A 233 PADYTAHNGAAAIRLSHDGHFLYVSNRG--YNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQN---- 306 (347)
T ss_dssp CTTCCSCCEEEEEEECTTSCEEEEEEET--TTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETT----
T ss_pred CCCCCCCCcceeEEECCCCCEEEEEeCC--CCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcC----
Confidence 1 346789999999988766543 3699999987 33566655543 56679999999999999873
Q ss_pred eCCcEEEEeec
Q 013871 305 IDNGIKIFHHN 315 (434)
Q Consensus 305 ~D~~i~iw~~~ 315 (434)
++.|.||+++
T Consensus 307 -~~~v~v~~~d 316 (347)
T 3hfq_A 307 -TDNATLYARD 316 (347)
T ss_dssp -TTEEEEEEEC
T ss_pred -CCcEEEEEEe
Confidence 5899999763
No 150
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.82 E-value=2.2e-17 Score=157.43 Aligned_cols=261 Identities=6% Similarity=-0.031 Sum_probs=181.6
Q ss_pred CeeeecCCCcEEEEec--------CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEE
Q 013871 53 PSIRFSSDEAVACRMA--------TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYA 124 (434)
Q Consensus 53 ~~~~~S~d~~~la~~~--------~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~ 124 (434)
..++|+||+++++... ++.|.+||..+......... ...+..+.|+|++. .+.+.. ...+.|.+|+
T Consensus 44 ~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~-~l~v~~----~~~~~v~~~d 117 (353)
T 3vgz_A 44 YEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN-DLKPFGATINNTTQ-TLWFGN----TVNSAVTAID 117 (353)
T ss_dssp EEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE-SSCCCSEEEETTTT-EEEEEE----TTTTEEEEEE
T ss_pred cceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec-CCCcceEEECCCCC-EEEEEe----cCCCEEEEEe
Confidence 3789999999887765 45899999987553222222 23577899999854 333322 2345899999
Q ss_pred cCCCCCCCceeeeeecccc---------eeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecC-C
Q 013871 125 CGKDLQSQPLARRSFFRCS---------TVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR-K 194 (434)
Q Consensus 125 ~~~~~~~~~i~~~~~~~~~---------~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~-~ 194 (434)
+.+ ++.+......... ...+.|+|+|+.+++.... ....++.++.... .....+. .
T Consensus 118 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~----------~~~~i~~~d~~~~-~~~~~~~~~ 183 (353)
T 3vgz_A 118 AKT---GEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIG----------KESVIWVVDGGNI-KLKTAIQNT 183 (353)
T ss_dssp TTT---CCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEES----------SSCEEEEEETTTT-EEEEEECCC
T ss_pred CCC---CeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecC----------CCceEEEEcCCCC-ceEEEecCC
Confidence 977 5665555543221 4678999999987664311 1123666666544 2222333 2
Q ss_pred CCCeEEEEECcCCCEEEEEEccCCCeEEEEeccccee-EEe------CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEE
Q 013871 195 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPI-LEL------GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWD 267 (434)
Q Consensus 195 ~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~-~~~------~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd 267 (434)
...++.++|+|+|+.+++ +..++.+.+||+....+ ..+ +......++|+|+|++|++++.+ ++.|.+||
T Consensus 184 ~~~~~~~~~s~dg~~l~~--~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~--~~~v~~~d 259 (353)
T 3vgz_A 184 GKMSTGLALDSEGKRLYT--TNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSK--AAEVLVVD 259 (353)
T ss_dssp CTTCCCCEEETTTTEEEE--ECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESS--SSEEEEEE
T ss_pred CCccceEEECCCCCEEEE--EcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCC--CCEEEEEE
Confidence 345789999999999886 34578999999975443 332 23346779999999988887744 37999999
Q ss_pred ccCCEEEEEeeCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec-Cceeeeeec-ccceeeEEEcCCCCCCCC
Q 013871 268 YVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLFFKKMF-DKLFQAEWKPVSPDKFGD 342 (434)
Q Consensus 268 ~~~~~~i~~~~~~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~-g~~~~~~~~-~~~~~~~w~p~~~~~~~~ 342 (434)
..+++.+..+..+....++|+|||++++++... ++.|.+||.. ++.+..... .....+.|.|++..+|..
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~-----~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~ 331 (353)
T 3vgz_A 260 TRNGNILAKVAAPESLAVLFNPARNEAYVTHRQ-----AGKVSVIDAKSYKVVKTFDTPTHPNSLALSADGKTLYVS 331 (353)
T ss_dssp TTTCCEEEEEECSSCCCEEEETTTTEEEEEETT-----TTEEEEEETTTTEEEEEEECCSEEEEEEECTTSCEEEEE
T ss_pred CCCCcEEEEEEcCCCceEEECCCCCEEEEEECC-----CCeEEEEECCCCeEEEEEecCCCCCeEEEcCCCCEEEEE
Confidence 999988888776666679999999988777743 8999999995 555554433 357889999998877664
No 151
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.82 E-value=1.3e-17 Score=157.92 Aligned_cols=239 Identities=9% Similarity=0.035 Sum_probs=156.7
Q ss_pred eEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcE-EEEEeecCcCCCCCCeeeecCCCcEEEEecCC----eEEEEeCC
Q 013871 4 LLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEA-VYQLFQKNMTKTTWPSIRFSSDEAVACRMATN----EIQFFDTT 78 (434)
Q Consensus 4 ~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~-~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~----~i~v~~~~ 78 (434)
+++|||||++|++.+. .++.|.+||+.+++. +..+.... ....+++|+||+++++....+ .|.+|+..
T Consensus 44 ~~~~s~dg~~l~~~~~----~~~~i~~~d~~~~~~~~~~~~~~~---~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~ 116 (331)
T 3u4y_A 44 DTAITSDCSNVVVTSD----FCQTLVQIETQLEPPKVVAIQEGQ---SSMADVDITPDDQFAVTVTGLNHPFNMQSYSFL 116 (331)
T ss_dssp EEEECSSSCEEEEEES----TTCEEEEEECSSSSCEEEEEEECS---SCCCCEEECTTSSEEEECCCSSSSCEEEEEETT
T ss_pred eEEEcCCCCEEEEEeC----CCCeEEEEECCCCceeEEecccCC---CCccceEECCCCCEEEEecCCCCcccEEEEECC
Confidence 7899999998887772 367999999999987 66655542 334238999999999865443 89999997
Q ss_pred CCCCceeeeee-cCCeeEEEEeCCCCCeEEEEecCCCCCCce-EEEEEcCCCCCCCceee----eeecccceeEEEECCC
Q 013871 79 DFPKGILYRLR-VPGVAAFEVSKAPGSHVAVFVPESKGSPAS-VQIYACGKDLQSQPLAR----RSFFRCSTVQLNWNRG 152 (434)
Q Consensus 79 ~~~~~~~~~~~-~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~-v~i~~~~~~~~~~~i~~----~~~~~~~~~~~~ws~~ 152 (434)
.... ...+. ......++|+|++...++. .. .... +.+|++.. ...+.. ..........+.|+|+
T Consensus 117 ~~~~--~~~~~~~~~~~~~~~spdg~~l~~~-~~----~~~~~i~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~spd 186 (331)
T 3u4y_A 117 KNKF--ISTIPIPYDAVGIAISPNGNGLILI-DR----SSANTVRRFKIDA---DGVLFDTGQEFISGGTRPFNITFTPD 186 (331)
T ss_dssp TTEE--EEEEECCTTEEEEEECTTSSCEEEE-EE----TTTTEEEEEEECT---TCCEEEEEEEEECSSSSEEEEEECTT
T ss_pred CCCe--EEEEECCCCccceEECCCCCEEEEE-ec----CCCceEEEEEECC---CCcEeecCCccccCCCCccceEECCC
Confidence 7443 22232 3457899999995443332 11 1235 89999875 222211 1122344678999999
Q ss_pred CCeEEEEEEecccccCceeecceeEEEEeeCCcce--eeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccce
Q 013871 153 STGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHE--GLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP 230 (434)
Q Consensus 153 G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~--~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~ 230 (434)
|+++++.... ...++.++...... ....+.....+..++|+|||+++++. ...++.|.+||++...
T Consensus 187 g~~l~v~~~~-----------~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~-~~~~~~i~~~d~~~~~ 254 (331)
T 3u4y_A 187 GNFAFVANLI-----------GNSIGILETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYVL-TESTVDVFNFNQLSGT 254 (331)
T ss_dssp SSEEEEEETT-----------TTEEEEEECSSTTSCEEEEEEECSSCCCCEEECTTSSEEEEE-CSSEEEEEEEETTTTE
T ss_pred CCEEEEEeCC-----------CCeEEEEECCCCcccceeeeccCCCCCceEEECCCCCEEEEE-EcCCCEEEEEECCCCc
Confidence 9987664311 11245555443321 02223335677899999999988764 4456789999997544
Q ss_pred eE---Ee------CCc---CeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEE
Q 013871 231 IL---EL------GSG---PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQ 273 (434)
Q Consensus 231 ~~---~~------~~~---~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~ 273 (434)
+. .+ +.. ..+.++|+|||++|++++.++ +.|.+||+.+...
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~--~~v~v~d~~~~~~ 307 (331)
T 3u4y_A 255 LSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANIS--RELKVFTISGKVV 307 (331)
T ss_dssp EEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTT--TEEEEEETTSCEE
T ss_pred eeeecccccccccCCCCcccccceEECCCCCEEEEecCCC--CcEEEEEecCCcc
Confidence 41 11 111 125689999999988877543 7999999987543
No 152
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.81 E-value=2e-17 Score=163.41 Aligned_cols=247 Identities=10% Similarity=0.153 Sum_probs=176.1
Q ss_pred CCCCeeeecCCCcEEEEe-cCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCC
Q 013871 50 TTWPSIRFSSDEAVACRM-ATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKD 128 (434)
Q Consensus 50 ~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~ 128 (434)
..+.+++ .|+++++++ .++.|++||..+.........+...|.+++| + +..+++ ++.++.|++|++.+
T Consensus 134 ~~v~~~~--~d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~-~~~l~s-----g~~dg~i~vwd~~~- 202 (435)
T 1p22_A 134 KGVYCLQ--YDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--D-ERVIIT-----GSSDSTVRVWDVNT- 202 (435)
T ss_dssp CCEEEEE--CCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--C-SSEEEE-----EETTSCEEEEESSS-
T ss_pred CcEEEEE--ECCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--C-CCEEEE-----EcCCCeEEEEECCC-
Confidence 4454544 489999888 4679999999876554444556667888887 3 445543 34567999999988
Q ss_pred CCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCccee---eeecCCCCCeEEEEECc
Q 013871 129 LQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEG---LVPLRKEGPVHDVQWSY 205 (434)
Q Consensus 129 ~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~---~v~l~~~~~i~~v~wsp 205 (434)
++.+.....+...+..+.|++ ..++. + ..|.... +| +....... .....+.+.|.+++|
T Consensus 203 --~~~~~~~~~h~~~v~~l~~~~--~~l~s-~--s~dg~i~-------vw--d~~~~~~~~~~~~~~~~~~~v~~~~~-- 264 (435)
T 1p22_A 203 --GEMLNTLIHHCEAVLHLRFNN--GMMVT-C--SKDRSIA-------VW--DMASPTDITLRRVLVGHRAAVNVVDF-- 264 (435)
T ss_dssp --CCEEEEECCCCSCEEEEECCT--TEEEE-E--ETTSCEE-------EE--ECSSSSCCEEEEEECCCSSCEEEEEE--
T ss_pred --CcEEEEEcCCCCcEEEEEEcC--CEEEE-e--eCCCcEE-------EE--eCCCCCCceeeeEecCCCCcEEEEEe--
Confidence 778888888888899999975 34332 2 2343333 33 33222111 233445789999999
Q ss_pred CCCEEEEEEccCCCeEEEEeccc-ceeEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--
Q 013871 206 SGSEFAVVYGFMPASATIFNKKC-RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-- 280 (434)
Q Consensus 206 dg~~~av~~g~~~~~v~l~d~~~-~~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-- 280 (434)
+++.++ +|..++.|.+||++. ..+..+ |...+.++.| ++++|++++ .+|.|++||+.+++.+..+.+|
T Consensus 265 ~~~~l~--s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~---~dg~i~iwd~~~~~~~~~~~~h~~ 337 (435)
T 1p22_A 265 DDKYIV--SASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGS---SDNTIRLWDIECGACLRVLEGHEE 337 (435)
T ss_dssp ETTEEE--EEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEE---TTSCEEEEETTTCCEEEEECCCSS
T ss_pred CCCEEE--EEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEe---CCCeEEEEECCCCCEEEEEeCCcC
Confidence 677777 577799999999964 444444 6788999998 478999998 5679999999999999998877
Q ss_pred CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc----------eeee--eecccceeeEEEcCCCCCCCC
Q 013871 281 CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS----------LFFK--KMFDKLFQAEWKPVSPDKFGD 342 (434)
Q Consensus 281 ~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~----------~~~~--~~~~~~~~~~w~p~~~~~~~~ 342 (434)
.+..++| +|.+|++++. |+.|+|||+... ++.. .+...+..+.| ++..++..
T Consensus 338 ~v~~~~~--~~~~l~sg~~------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~ 401 (435)
T 1p22_A 338 LVRCIRF--DNKRIVSGAY------DGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSS 401 (435)
T ss_dssp CEEEEEC--CSSEEEEEET------TSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEEC
T ss_pred cEEEEEe--cCCEEEEEeC------CCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEE
Confidence 3445666 8999999999 999999998432 3332 24467888988 44555554
No 153
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.81 E-value=3.7e-18 Score=165.47 Aligned_cols=302 Identities=11% Similarity=-0.023 Sum_probs=179.0
Q ss_pred EEEcCCCcEEEEEeecCcC--CCCCCeeeecCCCcEEEEecC--C--eEEEEeCCCCCCceeeeeecCCeeEEEEeCCCC
Q 013871 30 LWKTETGEAVYQLFQKNMT--KTTWPSIRFSSDEAVACRMAT--N--EIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPG 103 (434)
Q Consensus 30 iWd~~~g~~~~~~~~~~~~--~~~~~~~~~S~d~~~la~~~~--~--~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 103 (434)
.+|..+|..+..+..+... ..-+..++|||||++|++..+ + .|.+|++...........+...+..+.|||+ +
T Consensus 14 ~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spd-g 92 (388)
T 3pe7_A 14 YQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPD-D 92 (388)
T ss_dssp EECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTT-S
T ss_pred EecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCC-C
Confidence 3477888888877654310 011223789999999998854 3 5888888764321111111222335789999 5
Q ss_pred CeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeE--EEECCCCCeEEEEEEecccccC-c---------ee
Q 013871 104 SHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQ--LNWNRGSTGLLAVAQSDVDKTN-Q---------SY 171 (434)
Q Consensus 104 ~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~--~~ws~~G~~l~~~~~~~~d~~~-~---------~~ 171 (434)
..|++... ...+.+|++.+ ++.............. ..++++|+.++.......+... . ..
T Consensus 93 ~~l~~~~~-----~~~l~~~d~~~---g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (388)
T 3pe7_A 93 DALFYVKD-----GRNLMRVDLAT---LEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFT 164 (388)
T ss_dssp SEEEEEET-----TTEEEEEETTT---CCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGG
T ss_pred CEEEEEeC-----CCeEEEEECCC---CcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhcc
Confidence 66655432 25789999877 4444333333322222 3349999987754332211100 0 00
Q ss_pred ecceeEEEEeeCCcceeeeecCCCCCeEEEEECc-CCCEEEEEEccC----CCeEEEEecccceeEEeCC----cCeeEE
Q 013871 172 YGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSY-SGSEFAVVYGFM----PASATIFNKKCRPILELGS----GPYNTV 242 (434)
Q Consensus 172 ~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wsp-dg~~~av~~g~~----~~~v~l~d~~~~~~~~~~~----~~~~~i 242 (434)
.....|+.+++.++....+. .....+..++||| ||+.++++.... ...+.++|..+.....+.. ..+..+
T Consensus 165 ~~~~~l~~~d~~~g~~~~l~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~ 243 (388)
T 3pe7_A 165 KPCCRLMRVDLKTGESTVIL-QENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHE 243 (388)
T ss_dssp CCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEE
T ss_pred CCcceEEEEECCCCceEEee-cCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccc
Confidence 12246888887765333332 3356789999999 999998765432 3478888987666555532 246778
Q ss_pred EECCCCCeEEEEecCCC--CCeEEEEEccCCEE--EEEeeCC-----CceEEEECCCCCEEEEEEcCC---ceeeCCcEE
Q 013871 243 RWNPKGKFLCLAGFGNL--PGDMAFWDYVDGKQ--LGTTRAE-----CSVTSEWSPDGRYFMTATTAP---RLQIDNGIK 310 (434)
Q Consensus 243 ~~SP~g~~l~~~~~~~~--~g~i~iwd~~~~~~--i~~~~~~-----~~~~~~wspdg~~l~tas~~p---rl~~D~~i~ 310 (434)
.|||||+.|+..+..+. ++.|++||+.+++. +..+... ....+.|||||+.|+...... ...-+..|+
T Consensus 244 ~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~ 323 (388)
T 3pe7_A 244 FWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLY 323 (388)
T ss_dssp EECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEE
T ss_pred eECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEE
Confidence 99999998877654322 23499999998863 3333331 011247999999988764210 001156899
Q ss_pred EEeecCceeeeeec--c-----------cceeeEEEcCCCCCCC
Q 013871 311 IFHHNGSLFFKKMF--D-----------KLFQAEWKPVSPDKFG 341 (434)
Q Consensus 311 iw~~~g~~~~~~~~--~-----------~~~~~~w~p~~~~~~~ 341 (434)
+|+..+..+..... . ....+.|.|++..++.
T Consensus 324 ~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~ 367 (388)
T 3pe7_A 324 VFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILF 367 (388)
T ss_dssp EEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEE
T ss_pred EEeccCCceEEeccccCcccccccccccCCCCccCCCCCCEEEE
Confidence 99998765433321 2 3677899999876654
No 154
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.80 E-value=2.6e-17 Score=155.63 Aligned_cols=252 Identities=9% Similarity=0.061 Sum_probs=165.8
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCc--CCCCCCeeeecCCCcEEEEec-----------
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNM--TKTTWPSIRFSSDEAVACRMA----------- 68 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~--~~~~~~~~~~S~d~~~la~~~----------- 68 (434)
+..++|||+|++|+.... .++.|.+||+.+++.+..+..... +......++|+|||++++.+.
T Consensus 36 ~~~~~~s~dg~~l~v~~~----~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~ 111 (337)
T 1pby_B 36 PMVPMVAPGGRIAYATVN----KSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFE 111 (337)
T ss_dssp CCCEEECTTSSEEEEEET----TTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEE
T ss_pred ccceEEcCCCCEEEEEeC----CCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEeccccccccccc
Confidence 567999999998766551 467899999999998877764320 011445899999999888773
Q ss_pred --CCeEEEEeCCCCCCceeeeee-cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeeccccee
Q 013871 69 --TNEIQFFDTTDFPKGILYRLR-VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTV 145 (434)
Q Consensus 69 --~~~i~v~~~~~~~~~~~~~~~-~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~ 145 (434)
++.|.+||+..... ...+. ...+..+.|+|++.. +.+. .+.|.+|++.+ ++.+........ ..
T Consensus 112 ~~~~~i~v~d~~~~~~--~~~~~~~~~~~~~~~s~dg~~-l~~~-------~~~i~~~d~~~---~~~~~~~~~~~~-~~ 177 (337)
T 1pby_B 112 VQPTRVALYDAETLSR--RKAFEAPRQITMLAWARDGSK-LYGL-------GRDLHVMDPEA---GTLVEDKPIQSW-EA 177 (337)
T ss_dssp ECCCEEEEEETTTTEE--EEEEECCSSCCCEEECTTSSC-EEEE-------SSSEEEEETTT---TEEEEEECSTTT-TT
T ss_pred ccCceEEEEECCCCcE--EEEEeCCCCcceeEECCCCCE-EEEe-------CCeEEEEECCC---CcEeeeeecccc-CC
Confidence 58999999976432 22232 335778899999543 3332 25799999977 555444433221 12
Q ss_pred EEEECCCCCeEEEEEEecccccCceeec--------------ceeEEEEeeCCcceeeeecC-CCCCeEEEEECcCCCEE
Q 013871 146 QLNWNRGSTGLLAVAQSDVDKTNQSYYG--------------ESKLNYLTTDGTHEGLVPLR-KEGPVHDVQWSYSGSEF 210 (434)
Q Consensus 146 ~~~ws~~G~~l~~~~~~~~d~~~~~~~g--------------~~~l~~l~~~~~~~~~v~l~-~~~~i~~v~wspdg~~~ 210 (434)
.+.|+|+|..+++... .+......|. ...++.++........+.+. ....+..++|+|||+++
T Consensus 178 ~~~~s~dg~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l 255 (337)
T 1pby_B 178 ETYAQPDVLAVWNQHE--SSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRA 255 (337)
T ss_dssp TTBCCCBCCCCCCCCT--TTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEE
T ss_pred CceeCCCccEEeeecc--CCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEE
Confidence 4478999987654211 1110000000 01356666655432222222 23567889999999998
Q ss_pred EEEEccCCCeEEEEecccce-eEEe-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC
Q 013871 211 AVVYGFMPASATIFNKKCRP-ILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE 280 (434)
Q Consensus 211 av~~g~~~~~v~l~d~~~~~-~~~~-~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~ 280 (434)
++. ++.|.+||++... +..+ ....+.+++|+|+|++|++++ .++.|.+||+.+++.+..+..+
T Consensus 256 ~~~----~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~---~~~~i~v~d~~~~~~~~~~~~~ 320 (337)
T 1pby_B 256 FGA----YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGG---ALGDLAAYDAETLEKKGQVDLP 320 (337)
T ss_dssp EEE----ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEES---BSSEEEEEETTTCCEEEEEECG
T ss_pred EEe----CCeEEEEECCCCcCcceecCCCceeeEEECCCCCEEEEEc---CCCcEEEEECcCCcEEEEEEcC
Confidence 864 4799999997543 3333 345678999999999998886 3579999999999888777654
No 155
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.80 E-value=2.3e-16 Score=150.61 Aligned_cols=247 Identities=9% Similarity=0.081 Sum_probs=150.6
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcE--EEEEeecCcCCCCCCeeeecCCCcEEEEec--CCeEEEEeC
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEA--VYQLFQKNMTKTTWPSIRFSSDEAVACRMA--TNEIQFFDT 77 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~--~~~~~~~~~~~~~~~~~~~S~d~~~la~~~--~~~i~v~~~ 77 (434)
+..|+|||||+ |++.+.. ..++.|.+|++.+++. +..+.... .....++|+|||++|+++. ++.|.+|++
T Consensus 42 p~~~a~spdg~-l~~~~~~--~~~~~v~~~~~~~g~~~~~~~~~~~~---~~p~~~a~spdg~~l~~~~~~~~~v~v~~~ 115 (347)
T 3hfq_A 42 PTYLALSAKDC-LYSVDKE--DDEGGIAAWQIDGQTAHKLNTVVAPG---TPPAYVAVDEARQLVYSANYHKGTAEVMKI 115 (347)
T ss_dssp CCCEEECTTCE-EEEEEEE--TTEEEEEEEEEETTEEEEEEEEEEES---CCCSEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred cceEEEccCCe-EEEEEec--CCCceEEEEEecCCcEEEeeeeecCC---CCCEEEEECCCCCEEEEEeCCCCEEEEEEe
Confidence 35699999999 6555411 1357899999987763 33333222 4445899999999887764 579999998
Q ss_pred CCCCCc-eeeeeec-----------CCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCcee--eeeec-cc
Q 013871 78 TDFPKG-ILYRLRV-----------PGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLA--RRSFF-RC 142 (434)
Q Consensus 78 ~~~~~~-~~~~~~~-----------~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~--~~~~~-~~ 142 (434)
...... ....+.. ..+..++|+|++. .++. . ...+.|.+|++... +.... ..... ..
T Consensus 116 ~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~-~----~~~~~v~~~~~~~~--g~~~~~~~~~~~~g~ 187 (347)
T 3hfq_A 116 AADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVI-D----LGSDKVYVYNVSDA--GQLSEQSVLTMEAGF 187 (347)
T ss_dssp CTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEE-E----TTTTEEEEEEECTT--SCEEEEEEEECCTTC
T ss_pred CCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEE-e----CCCCEEEEEEECCC--CcEEEeeeEEcCCCC
Confidence 642221 1122222 1367899999965 3321 1 22358999999731 22211 11121 22
Q ss_pred ceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcce-e--eee-cCC----CCCeEEEEECcCCCEEEEEE
Q 013871 143 STVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHE-G--LVP-LRK----EGPVHDVQWSYSGSEFAVVY 214 (434)
Q Consensus 143 ~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~-~--~v~-l~~----~~~i~~v~wspdg~~~av~~ 214 (434)
....+.|+|+|++|++... .+. ...+|.++...... . .+. +.. ...+..++|+|||+++++.
T Consensus 188 ~p~~~~~spdg~~l~v~~~--~~~-------~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~- 257 (347)
T 3hfq_A 188 GPRHLVFSPDGQYAFLAGE--LSS-------QIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVS- 257 (347)
T ss_dssp CEEEEEECTTSSEEEEEET--TTT-------EEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEE-
T ss_pred CCceEEECCCCCEEEEEeC--CCC-------EEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEE-
Confidence 4557899999998766421 111 11233333211111 1 111 111 1357899999999988763
Q ss_pred ccCCCeEEEEeccc----ceeEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEE--EccCCEEE
Q 013871 215 GFMPASATIFNKKC----RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFW--DYVDGKQL 274 (434)
Q Consensus 215 g~~~~~v~l~d~~~----~~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iw--d~~~~~~i 274 (434)
+..++.|.+||+.. ..+..+ +......++|+|||++|++++.++ +.|.+| |.+++++.
T Consensus 258 ~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~--~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 258 NRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNT--DNATLYARDLTSGKLS 323 (347)
T ss_dssp EETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTT--TEEEEEEECTTTCCEE
T ss_pred eCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCC--CcEEEEEEeCCCCeEE
Confidence 55578999999852 223333 344578999999999999988643 689999 55566544
No 156
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.80 E-value=5.5e-17 Score=153.79 Aligned_cols=260 Identities=8% Similarity=0.041 Sum_probs=162.2
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcC--CCcE--EEEEeecCcCCCCCCeeeecCCCcEEEEec--CCeEEEE
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTE--TGEA--VYQLFQKNMTKTTWPSIRFSSDEAVACRMA--TNEIQFF 75 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~--~g~~--~~~~~~~~~~~~~~~~~~~S~d~~~la~~~--~~~i~v~ 75 (434)
+.+++|||+|++|++.+. .++.|.+|++. +++. +..+... .....++|+||+++++.+. ++.|.+|
T Consensus 40 ~~~~~~spdg~~l~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~s~dg~~l~~~~~~~~~i~~~ 111 (343)
T 1ri6_A 40 VQPMVVSPDKRYLYVGVR----PEFRVLAYRIAPDDGALTFAAESALP----GSLTHISTDHQGQFVFVGSYNAGNVSVT 111 (343)
T ss_dssp CCCEEECTTSSEEEEEET----TTTEEEEEEECTTTCCEEEEEEEECS----SCCSEEEECTTSSEEEEEETTTTEEEEE
T ss_pred CceEEECCCCCEEEEeec----CCCeEEEEEecCCCCceeeccccccC----CCCcEEEEcCCCCEEEEEecCCCeEEEE
Confidence 568999999999998882 23899999997 6653 3444332 2445899999999876653 5789999
Q ss_pred eCCCCCCcee-eeee-cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCcee-----eeee-cccceeEE
Q 013871 76 DTTDFPKGIL-YRLR-VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLA-----RRSF-FRCSTVQL 147 (434)
Q Consensus 76 ~~~~~~~~~~-~~~~-~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~-----~~~~-~~~~~~~~ 147 (434)
++.+...... ..+. ...+..++|+|++ ..+.+.. ...+.|.+|++... ..+. .... .......+
T Consensus 112 d~~~~~~~~~~~~~~~~~~~~~~~~s~dg-~~l~~~~----~~~~~v~~~d~~~~---~~~~~~~~~~~~~~~~~~~~~~ 183 (343)
T 1ri6_A 112 RLEDGLPVGVVDVVEGLDGCHSANISPDN-RTLWVPA----LKQDRICLFTVSDD---GHLVAQDPAEVTTVEGAGPRHM 183 (343)
T ss_dssp EEETTEEEEEEEEECCCTTBCCCEECTTS-SEEEEEE----GGGTEEEEEEECTT---SCEEEEEEEEEECSTTCCEEEE
T ss_pred ECCCCccccccccccCCCCceEEEECCCC-CEEEEec----CCCCEEEEEEecCC---CceeeecccccccCCCCCcceE
Confidence 9852111111 1121 3357889999984 4443322 13468999999752 2222 1222 12355679
Q ss_pred EECCCCCeEEEEEEecccccCceeecceeEEEEeeCC--cce---eeee-cCC----CCCeEEEEECcCCCEEEEEEccC
Q 013871 148 NWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDG--THE---GLVP-LRK----EGPVHDVQWSYSGSEFAVVYGFM 217 (434)
Q Consensus 148 ~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~--~~~---~~v~-l~~----~~~i~~v~wspdg~~~av~~g~~ 217 (434)
.|+|+|+++++... .+. .+..++... ... ..+. +.. ...+..++|+|+|+++++ ++..
T Consensus 184 ~~~pdg~~l~~~~~--~~~---------~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v-~~~~ 251 (343)
T 1ri6_A 184 VFHPNEQYAYCVNE--LNS---------SVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYA-CDRT 251 (343)
T ss_dssp EECTTSSEEEEEET--TTT---------EEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEE-EETT
T ss_pred EECCCCCEEEEEeC--CCC---------EEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEE-EecC
Confidence 99999998766421 111 133333321 110 0111 111 235668999999998876 4556
Q ss_pred CCeEEEEecc--c---ceeEEe-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEc--cCC--EEEEEeeC-CCceEEE
Q 013871 218 PASATIFNKK--C---RPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDY--VDG--KQLGTTRA-ECSVTSE 286 (434)
Q Consensus 218 ~~~v~l~d~~--~---~~~~~~-~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~--~~~--~~i~~~~~-~~~~~~~ 286 (434)
++.+.+||++ . ..+..+ ....+..++|+|+|++|++++.+ ++.|.+|++ +++ +.+..+.. ..+..++
T Consensus 252 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~--~~~v~v~~~d~~~g~~~~~~~~~~g~~p~~i~ 329 (343)
T 1ri6_A 252 ASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQK--SHHISVYEIVGEQGLLHEKGRYAVGQGPMWVV 329 (343)
T ss_dssp TTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTT--TCEEEEEEEETTTTEEEEEEEEECSSSCCEEE
T ss_pred CCEEEEEEEcCCCCceEEeeeecCCCccceEEECCCCCEEEEecCC--CCeEEEEEEcCCCceeeEccccccCCCCeeEE
Confidence 8899999986 2 223233 23447899999999999888743 379999954 466 34444443 3566677
Q ss_pred ECCCC
Q 013871 287 WSPDG 291 (434)
Q Consensus 287 wspdg 291 (434)
|.|+-
T Consensus 330 ~~~~~ 334 (343)
T 1ri6_A 330 VNAHE 334 (343)
T ss_dssp EEEEC
T ss_pred EEccc
Confidence 77653
No 157
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.79 E-value=8.8e-18 Score=177.67 Aligned_cols=227 Identities=15% Similarity=0.211 Sum_probs=165.7
Q ss_pred eeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCC--CCeEEEEEEec
Q 013871 86 YRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRG--STGLLAVAQSD 163 (434)
Q Consensus 86 ~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~--G~~l~~~~~~~ 163 (434)
...|...|.+++|+|++ ..+++ ++.++.|++|++.... ...+.....|...+..+.|+++ |+.|+...
T Consensus 5 l~gH~~~V~~l~~s~dg-~~lat-----g~~dg~I~vwd~~~~~-~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s--- 74 (753)
T 3jro_A 5 ANAHNELIHDAVLDYYG-KRLAT-----CSSDKTIKIFEVEGET-HKLIDTLTGHEGPVWRVDWAHPKFGTILASCS--- 74 (753)
T ss_dssp ---CCCCEEEECCCSSS-CCEEE-----EETTTEEEEEEEETTE-EEEEEEECCCSSCEEEEEECCTTSCSEEEEEE---
T ss_pred cccCcceeEEEEECCCC-CeEEE-----EECCCcEEEEecCCCC-CccceeccCCcCceEEEEecCCCCCCEEEEEe---
Confidence 34566789999999994 44543 2456899999997421 4566677778889999999988 87765432
Q ss_pred ccccCceeecceeEEEEeeCCcc--eeeeecCCCCCeEEEEECcC--CCEEEEEEccCCCeEEEEecccc---eeE--Ee
Q 013871 164 VDKTNQSYYGESKLNYLTTDGTH--EGLVPLRKEGPVHDVQWSYS--GSEFAVVYGFMPASATIFNKKCR---PIL--EL 234 (434)
Q Consensus 164 ~d~~~~~~~g~~~l~~l~~~~~~--~~~v~l~~~~~i~~v~wspd--g~~~av~~g~~~~~v~l~d~~~~---~~~--~~ 234 (434)
.|...+ +|.+ .... .......+.++|.+++|+|+ ++.|+ +|..++.|.+||++.. ... ..
T Consensus 75 ~Dg~I~-------vwd~--~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~--sgs~dg~I~vwdl~~~~~~~~~~~~~ 143 (753)
T 3jro_A 75 YDGKVL-------IWKE--ENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLL--VASSDGKVSVVEFKENGTTSPIIIDA 143 (753)
T ss_dssp TTSCEE-------EEEE--ETTEEEEEEEECCCSSCEEEEEECCGGGCSEEE--EEETTSEEEEEECCSSSCCCCEEEEC
T ss_pred CCCeEE-------EEEC--CCCcccccccccCCCCCeEEEEECCCCCCCEEE--EEeCCCcEEEEEeecCCCcceeEeec
Confidence 344333 3333 2321 11222335789999999999 88888 5778999999999643 222 33
Q ss_pred CCcCeeEEEECC-------------CCCeEEEEecCCCCCeEEEEEccCC----EEEEEeeCC--CceEEEECCC---CC
Q 013871 235 GSGPYNTVRWNP-------------KGKFLCLAGFGNLPGDMAFWDYVDG----KQLGTTRAE--CSVTSEWSPD---GR 292 (434)
Q Consensus 235 ~~~~~~~i~~SP-------------~g~~l~~~~~~~~~g~i~iwd~~~~----~~i~~~~~~--~~~~~~wspd---g~ 292 (434)
|...+.++.|+| +|++|++++ .+|.|++||+.++ ..+..+.+| .+..++|+|+ |+
T Consensus 144 ~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs---~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~ 220 (753)
T 3jro_A 144 HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGG---ADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS 220 (753)
T ss_dssp CSSCEEEEEECCCC---------CGGGCCEEEEE---TTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSE
T ss_pred CCCceEEEEecCcccccccccccCCCCCEEEEEE---CCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCC
Confidence 788999999999 589999998 5679999999876 566666665 5667999999 99
Q ss_pred EEEEEEcCCceeeCCcEEEEeecCc------eeee--eecccceeeEEEcCCCCCCCC
Q 013871 293 YFMTATTAPRLQIDNGIKIFHHNGS------LFFK--KMFDKLFQAEWKPVSPDKFGD 342 (434)
Q Consensus 293 ~l~tas~~prl~~D~~i~iw~~~g~------~~~~--~~~~~~~~~~w~p~~~~~~~~ 342 (434)
+|++++. |+.|+||++... .+.. .+...+..+.|.|++..++..
T Consensus 221 ~l~s~s~------Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~ 272 (753)
T 3jro_A 221 YLASVSQ------DRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALS 272 (753)
T ss_dssp EEEEEES------SSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEE
T ss_pred EEEEEec------CCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEE
Confidence 9999999 999999999653 2221 244678999999998877764
No 158
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.79 E-value=2.8e-18 Score=167.41 Aligned_cols=211 Identities=11% Similarity=0.023 Sum_probs=127.3
Q ss_pred cceEEecC--------CCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCc-EEEEe-cCCe
Q 013871 2 LLLLTCLR--------VGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEA-VACRM-ATNE 71 (434)
Q Consensus 2 V~~l~fSP--------~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~-~la~~-~~~~ 71 (434)
|.+|+||| ||++|++++ .|++|+|||+.++.++..+..+. ..+.+++|+|++. +|+++ .|++
T Consensus 139 v~~v~~~p~~~~~~~~d~~~las~s-----~D~tv~~Wd~~~~~~~~~~~~~~---~~v~~v~~~p~~~~~l~~~~~d~~ 210 (393)
T 4gq1_A 139 VNDIDIADVYSADNRLAEQVIASVG-----DDCTLIIWRLTDEGPILAGYPLS---SPGISVQFRPSNPNQLIVGERNGN 210 (393)
T ss_dssp EEEEEEEEEECTTCSEEEEEEEEEE-----TTSEEEEEEEETTEEEEEEEECS---SCEEEEEEETTEEEEEEEEETTSE
T ss_pred eEEEEEccccccccCCCCCEEEEEE-----CCCeEEEEECCCCceeeeecCCC---CCcEEEEECCCCCceEEecCCCCE
Confidence 78999998 899999999 89999999998887777666543 5566999999875 67777 5689
Q ss_pred EEEEeCCCCCCceee-------------------------eeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcC
Q 013871 72 IQFFDTTDFPKGILY-------------------------RLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACG 126 (434)
Q Consensus 72 i~v~~~~~~~~~~~~-------------------------~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~ 126 (434)
|++||+......... ..+...+..+.|++..+..++. ...++.+++|++.
T Consensus 211 v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s-----~s~d~~i~vwd~~ 285 (393)
T 4gq1_A 211 IRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILA-----MCKSGAWLRWNLF 285 (393)
T ss_dssp EEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEE-----ECTTSEEEEEEC-
T ss_pred EEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEE-----EeCCCCEEEEECc
Confidence 999998653321100 1122346667776322444443 2455789999986
Q ss_pred CCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcC
Q 013871 127 KDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYS 206 (434)
Q Consensus 127 ~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspd 206 (434)
. .........+......+.+.+++.. . ..........|+|.
T Consensus 286 ~---~~~~~~l~~~~~~~~~~~~~~~~~~------------------------~------------~~~~~~~~~~~~~~ 326 (393)
T 4gq1_A 286 A---NNDYNEISDSTMKLGPKNLLPNVQG------------------------I------------SLFPSLLGACPHPR 326 (393)
T ss_dssp ---------------------CCSCSEEE------------------------E------------CSSCCSSCCEECSS
T ss_pred c---CCCCceEeeecCccccEEEcccccc------------------------c------------cccCcceeEEEccC
Confidence 5 3322222222211112222221110 0 00112223445554
Q ss_pred -CCEEEEEEccCCCeEEEEeccc-ceeEE--eCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEcc
Q 013871 207 -GSEFAVVYGFMPASATIFNKKC-RPILE--LGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV 269 (434)
Q Consensus 207 -g~~~av~~g~~~~~v~l~d~~~-~~~~~--~~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~ 269 (434)
+..|+ ++|..|+.|+|||... ..+.. -+..+|++++|||||++||+++.+ .+.+|.+.
T Consensus 327 ~~~~~~-~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~----Gv~lvrL~ 388 (393)
T 4gq1_A 327 YMDYFA-TAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEG----SVLLTRLM 388 (393)
T ss_dssp CTTEEE-EEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESS----EEEEEEEG
T ss_pred CCCEEE-EEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCC----CeEEEEEe
Confidence 44444 4788899999999863 33332 377899999999999999999733 47777653
No 159
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.77 E-value=2.1e-16 Score=166.86 Aligned_cols=291 Identities=10% Similarity=0.049 Sum_probs=171.8
Q ss_pred eEEecCCCcEEEEEecCCC----CCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCC
Q 013871 4 LLTCLRVGLIIQTFQKSST----PQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTD 79 (434)
Q Consensus 4 ~l~fSP~g~~L~t~~~~~~----~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~ 79 (434)
.++|||||++|+..+.... ...+.+.|||+.+|+... +.... ..+..++|||||+.||++.++.|.+|+...
T Consensus 66 ~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~-l~~~~---~~~~~~~~SPdG~~la~~~~~~i~~~~~~~ 141 (740)
T 4a5s_A 66 DYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLIT-EERIP---NNTQWVTWSPVGHKLAYVWNNDIYVKIEPN 141 (740)
T ss_dssp EEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC-SSCCC---TTEEEEEECSSTTCEEEEETTEEEEESSTT
T ss_pred ceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEE-cccCC---CcceeeEECCCCCEEEEEECCeEEEEECCC
Confidence 3789999999998772100 112578899999997533 33221 344589999999999999999999999876
Q ss_pred CCCceeeeeec---------------------CCeeEEEEeCCCCCeEEEEecCCC------------------------
Q 013871 80 FPKGILYRLRV---------------------PGVAAFEVSKAPGSHVAVFVPESK------------------------ 114 (434)
Q Consensus 80 ~~~~~~~~~~~---------------------~~v~~~~~sp~~~~~ia~~~~~~~------------------------ 114 (434)
... .++.. .....+.|||| +..|++...+..
T Consensus 142 ~~~---~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpD-g~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~ 217 (740)
T 4a5s_A 142 LPS---YRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPN-GTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVP 217 (740)
T ss_dssp SCC---EECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTT-SSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEE
T ss_pred Cce---EEEcCCCCccceecCcccccccchhcCCCcceEECCC-CCEEEEEEEcccCCceEEEEeecCCCCCCCcceeec
Confidence 432 22211 11235899999 566665532111
Q ss_pred -------CCCceEEEEEcCC---CCCCCceeeeee------cccceeEEEECCCCCeEEEEEEecccccCceeecceeEE
Q 013871 115 -------GSPASVQIYACGK---DLQSQPLARRSF------FRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLN 178 (434)
Q Consensus 115 -------~~~~~v~i~~~~~---~~~~~~i~~~~~------~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~ 178 (434)
.....+.+|++.+ .. ......+.. +......+.|+|||+.+++..... . ....|+
T Consensus 218 yp~~G~~~~~~~l~v~d~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~--~------~~~~i~ 288 (740)
T 4a5s_A 218 YPKAGAVNPTVKFFVVNTDSLSSVT-NATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRI--Q------NYSVMD 288 (740)
T ss_dssp CCBTTSCCCEEEEEEEETTSCCSSS-CCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESS--T------TEEEEE
T ss_pred CCCCcCcCCeeEEEEEECCCCCCCC-cceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCC--C------CEEEEE
Confidence 1112677888865 21 002222222 344567889999999655433221 1 122466
Q ss_pred EEeeCCcce---eee-----ecCCCCCe-----EEEEECcCCCEEEEEEccCCC--eEEEEecccceeEEeCC--cCeeE
Q 013871 179 YLTTDGTHE---GLV-----PLRKEGPV-----HDVQWSYSGSEFAVVYGFMPA--SATIFNKKCRPILELGS--GPYNT 241 (434)
Q Consensus 179 ~l~~~~~~~---~~v-----~l~~~~~i-----~~v~wspdg~~~av~~g~~~~--~v~l~d~~~~~~~~~~~--~~~~~ 241 (434)
.+++.++.. +.. .-.+.+.| .+++|||||+.|++.....++ .|.+||+.+.....+.. ..+..
T Consensus 289 ~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~g~~~v~~ 368 (740)
T 4a5s_A 289 ICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVIG 368 (740)
T ss_dssp EEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEESCCSSSCEEE
T ss_pred EEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEecccCCEEEEE
Confidence 666655420 111 11123333 378999999998843444444 78888988766666633 33444
Q ss_pred EEECCCCCeEEEEecC--CC--CCeEEEEEccCCEEEEEeeC------CCceEEEECCCCCEEEEEEcCCceeeCCcEEE
Q 013871 242 VRWNPKGKFLCLAGFG--NL--PGDMAFWDYVDGKQLGTTRA------ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKI 311 (434)
Q Consensus 242 i~~SP~g~~l~~~~~~--~~--~g~i~iwd~~~~~~i~~~~~------~~~~~~~wspdg~~l~tas~~prl~~D~~i~i 311 (434)
+. ++||+.|+..+.+ .. ...|+..++..++....+.. .....+.|||||++++.....|. -..+.+
T Consensus 369 ~~-~~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~---~p~~~l 444 (740)
T 4a5s_A 369 IE-ALTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPG---LPLYTL 444 (740)
T ss_dssp EE-EECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBS---SCEEEE
T ss_pred EE-EEeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCC---CCEEEE
Confidence 43 3557776666543 22 23555556655443323321 24556999999999988877543 234566
Q ss_pred Eeec
Q 013871 312 FHHN 315 (434)
Q Consensus 312 w~~~ 315 (434)
++..
T Consensus 445 ~~~~ 448 (740)
T 4a5s_A 445 HSSV 448 (740)
T ss_dssp EETT
T ss_pred EECC
Confidence 6654
No 160
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.77 E-value=8.9e-18 Score=172.27 Aligned_cols=255 Identities=13% Similarity=0.025 Sum_probs=161.6
Q ss_pred CCCeeeecCCCcEEEEec--CCeEEEEeCCCCCCceeeeee--c-CCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEc
Q 013871 51 TWPSIRFSSDEAVACRMA--TNEIQFFDTTDFPKGILYRLR--V-PGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYAC 125 (434)
Q Consensus 51 ~~~~~~~S~d~~~la~~~--~~~i~v~~~~~~~~~~~~~~~--~-~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~ 125 (434)
.+.+++|||||++||+++ +++++||++.... ..++. . ..+..+.|||+ .+++..... +.....+||.+
T Consensus 23 ~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~---~~~lt~~~~~~~~~~~~spd---~~l~~~~~~-~g~~~~~l~~~ 95 (582)
T 3o4h_A 23 EKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGE---TVKLNREPINSVLDPHYGVG---RVILVRDVS-KGAEQHALFKV 95 (582)
T ss_dssp CEEEEEEEETTTEEEEEEEETTEEEEEEEETTE---EEECCSSCCSEECEECTTCS---EEEEEEECS-TTSCCEEEEEE
T ss_pred chheeecCCCCCeEEEEEccCCceeEEEEcCCC---cEeeecccccccccccCCCC---eEEEEeccC-CCCcceEEEEE
Confidence 344889999999999874 6899999984422 22222 2 36888999987 344433321 12234556555
Q ss_pred CCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECc
Q 013871 126 GKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSY 205 (434)
Q Consensus 126 ~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wsp 205 (434)
.....+... ...... ....+.|+|+|+.+++.... .+. ..|| ++.++....+.- ... .+++|||
T Consensus 96 ~~~~~g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~-~~~--------~~l~--d~~~g~~~~l~~-~~~--~~~~~sp 159 (582)
T 3o4h_A 96 NTSRPGEEQ-RLEAVK-PMRILSGVDTGEAVVFTGAT-EDR--------VALY--ALDGGGLRELAR-LPG--FGFVSDI 159 (582)
T ss_dssp ETTSTTCCE-ECTTSC-SBEEEEEEECSSCEEEEEEC-SSC--------EEEE--EEETTEEEEEEE-ESS--CEEEEEE
T ss_pred eccCCCccc-cccCCC-CceeeeeCCCCCeEEEEecC-CCC--------ceEE--EccCCcEEEeec-CCC--ceEEECC
Confidence 430002222 222222 22356899999987665332 111 1134 333432222221 122 8999999
Q ss_pred CCCEEEEEEccCC--CeEEEEecccceeEEe--CCcCeeEEEECCCCCeEEEEecCCCCC--eEEEEEccCCEEEEEeeC
Q 013871 206 SGSEFAVVYGFMP--ASATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPG--DMAFWDYVDGKQLGTTRA 279 (434)
Q Consensus 206 dg~~~av~~g~~~--~~v~l~d~~~~~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g--~i~iwd~~~~~~i~~~~~ 279 (434)
||+.++..+.... ..|++||+.+.....+ +.+.++.++|||||++|+.+. .+| .|++||+++++.. .+..
T Consensus 160 DG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~~---~~~~~~i~~~d~~~~~~~-~~~~ 235 (582)
T 3o4h_A 160 RGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGLE---TAREARLVTVDPRDGSVE-DLEL 235 (582)
T ss_dssp ETTEEEEEEEEETTEEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEEEE---CSSCEEEEEECTTTCCEE-ECCC
T ss_pred CCCEEEEEEEcCCCCeEEEEEcCCCCCceEeecCCCccccceECCCCCEEEEcc---CCCeeEEEEEcCCCCcEE-EccC
Confidence 9999996443211 4799999876555555 456789999999999999655 345 8999999998776 5554
Q ss_pred C--CceEEE--------ECCCCCEEEEEEcCCceeeCCcEEEEeecCceeeeeecccceeeEEEcCCCCCCC
Q 013871 280 E--CSVTSE--------WSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKKMFDKLFQAEWKPVSPDKFG 341 (434)
Q Consensus 280 ~--~~~~~~--------wspdg~~l~tas~~prl~~D~~i~iw~~~g~~~~~~~~~~~~~~~w~p~~~~~~~ 341 (434)
+ .+..+. |||||..+++++. |+.++||++ |+++. .....+..+.|+ ++..++.
T Consensus 236 ~~~~~~~~~~~~~~~~~~spdg~~~~~~~~------~g~~~l~~~-g~~~~-~~~~~v~~~~~s-dg~~l~~ 298 (582)
T 3o4h_A 236 PSKDFSSYRPTAITWLGYLPDGRLAVVARR------EGRSAVFID-GERVE-APQGNHGRVVLW-RGKLVTS 298 (582)
T ss_dssp SCSHHHHHCCSEEEEEEECTTSCEEEEEEE------TTEEEEEET-TEEEC-CCSSEEEEEEEE-TTEEEEE
T ss_pred CCcChhhhhhccccceeEcCCCcEEEEEEc------CCcEEEEEE-CCeec-cCCCceEEEEec-CCEEEEE
Confidence 4 222355 9999988888888 999999999 87654 233456777888 6554443
No 161
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.77 E-value=6.6e-17 Score=151.64 Aligned_cols=215 Identities=11% Similarity=0.031 Sum_probs=128.9
Q ss_pred cceEEecCC----CcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeC
Q 013871 2 LLLLTCLRV----GLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDT 77 (434)
Q Consensus 2 V~~l~fSP~----g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~ 77 (434)
|++|+|||| +++|+..+ ..+.||++.+|+.+.+.... +...+..++++|||+.++
T Consensus 114 v~sla~spd~~~~~~~l~s~g-------~~~~v~~l~~g~lv~ss~~g--~d~~V~~~~~s~dG~~~~------------ 172 (356)
T 2w18_A 114 IRALFCSSDDESEKQVLLKSG-------NIKAVLGLTKRRLVSSSGTL--SDQQVEVMTFAEDGGGKE------------ 172 (356)
T ss_dssp EEEECC------CCEEEEEEE-------EEEEEEEETTTEEEEEESSS--TTCEEEEEEECTTSCEEE------------
T ss_pred eEEEEECCCccccccEEEeCC-------CeEEEEecCCCcEEEecccC--CCCcEEEEEECCCCceee------------
Confidence 578888888 88888755 44778887777666553211 113444555555555554
Q ss_pred CCCCCceeeeeecCCeeEEEEeC--CCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecc---cceeEEEECCC
Q 013871 78 TDFPKGILYRLRVPGVAAFEVSK--APGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFR---CSTVQLNWNRG 152 (434)
Q Consensus 78 ~~~~~~~~~~~~~~~v~~~~~sp--~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~---~~~~~~~ws~~ 152 (434)
...++...+..++||| +.+..++. ++.+++|+||++.+ ++.+.++..+. ..++.+.|+|+
T Consensus 173 -------s~~~~~~~v~~l~fs~~~g~~~~LaS-----gS~D~TIkIWDl~T---Gk~l~tL~g~~~~v~~v~~vafSpd 237 (356)
T 2w18_A 173 -------NQFLMPPEETILTFAEVQGMQEALLG-----TTIMNNIVIWNLKT---GQLLKKMHIDDSYQASVCHKAYSEM 237 (356)
T ss_dssp -------EEEECCCSSCEEEEEEEETSTTEEEE-----EETTSEEEEEETTT---CCEEEEEECCC---CCCEEEEEEET
T ss_pred -------eeccCCCceeeEEeeccCCCCceEEE-----ecCCCcEEEEECCC---CcEEEEEcCCCcceeeeEEEEECCC
Confidence 2345556677777777 22455552 45678999999988 77777776432 34556789999
Q ss_pred CCeEEEEE---------EecccccCceeecceeEEEEeeCCcceeee-----ecCCCCCeEEEEECcCCCEEEEEEccCC
Q 013871 153 STGLLAVA---------QSDVDKTNQSYYGESKLNYLTTDGTHEGLV-----PLRKEGPVHDVQWSYSGSEFAVVYGFMP 218 (434)
Q Consensus 153 G~~l~~~~---------~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v-----~l~~~~~i~~v~wspdg~~~av~~g~~~ 218 (434)
|..++... +...|.+.+ .++...+....+ +-.+.+.+.+..++ +..++ ++..|
T Consensus 238 G~~lvs~s~~~~~w~laSGs~D~tIk---------lWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lA--SgS~D 304 (356)
T 2w18_A 238 GLLFIVLSHPCAKESESLRSPVFQLI---------VINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAA--AILTS 304 (356)
T ss_dssp TEEEEEEC------------CCEEEE---------EEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEE--EEETT
T ss_pred CCEEEEeccCCCcceeeccCCCcEEE---------EEECCCCEEEEEEEeeccCCCcceeEccccC--CCEEE--EEcCC
Confidence 98775532 222233332 223322211111 01112223333332 44455 68889
Q ss_pred CeEEEEeccc-ceeEEe--CCcCee-EEEECCCCCeEEEEecCCCCCeEEEEEc
Q 013871 219 ASATIFNKKC-RPILEL--GSGPYN-TVRWNPKGKFLCLAGFGNLPGDMAFWDY 268 (434)
Q Consensus 219 ~~v~l~d~~~-~~~~~~--~~~~~~-~i~~SP~g~~l~~~~~~~~~g~i~iwd~ 268 (434)
++|+|||++. +.+.++ |...+. .++|||||++|++|+ .|++|+|||.
T Consensus 305 gTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS---~D~TIklWd~ 355 (356)
T 2w18_A 305 GTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQ---KDGNIFVYHY 355 (356)
T ss_dssp SCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEEC---TTSCEEEEEE
T ss_pred CcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEE---CCCcEEEecC
Confidence 9999999974 556666 444444 689999999999998 5679999995
No 162
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.75 E-value=7.3e-17 Score=156.38 Aligned_cols=290 Identities=8% Similarity=-0.037 Sum_probs=168.9
Q ss_pred EEEcCCCcEEEEEeecCc--CCCCCCeeeecCCCcEEEEecC----CeEEEEeCCCCCCceeeeeec--CCee-EEEEeC
Q 013871 30 LWKTETGEAVYQLFQKNM--TKTTWPSIRFSSDEAVACRMAT----NEIQFFDTTDFPKGILYRLRV--PGVA-AFEVSK 100 (434)
Q Consensus 30 iWd~~~g~~~~~~~~~~~--~~~~~~~~~~S~d~~~la~~~~----~~i~v~~~~~~~~~~~~~~~~--~~v~-~~~~sp 100 (434)
..|..+|+.+..+..... +...+..++|||||++|++..+ ..|.+|+..... ...+.. ..+. .+.|||
T Consensus 14 ~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~---~~~l~~~~~~~~~~~~~sp 90 (396)
T 3c5m_A 14 FVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQ---AVQLTEGKGDNTFGGFIST 90 (396)
T ss_dssp EECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTE---EEECCCSSCBCTTTCEECT
T ss_pred eecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCc---EEEeecCCCCccccceECC
Confidence 447888888777754321 0112457899999999988743 278888886632 222221 1222 378999
Q ss_pred CCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeE-------------------EEECCCCCeEEEEEE
Q 013871 101 APGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQ-------------------LNWNRGSTGLLAVAQ 161 (434)
Q Consensus 101 ~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~-------------------~~ws~~G~~l~~~~~ 161 (434)
+ +..|++.... ..+.+|++.. ++.............. ..|+|+|+.+++...
T Consensus 91 d-g~~l~~~~~~-----~~l~~~d~~~---~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~ 161 (396)
T 3c5m_A 91 D-ERAFFYVKNE-----LNLMKVDLET---LEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEF 161 (396)
T ss_dssp T-SSEEEEEETT-----TEEEEEETTT---CCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHH
T ss_pred C-CCEEEEEEcC-----CcEEEEECCC---CCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeee
Confidence 9 5566544322 3688888865 3332222211110000 123444443322100
Q ss_pred ecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECc-CCCEEEEEEccCC----CeEEEEecccceeEEeCC
Q 013871 162 SDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSY-SGSEFAVVYGFMP----ASATIFNKKCRPILELGS 236 (434)
Q Consensus 162 ~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wsp-dg~~~av~~g~~~----~~v~l~d~~~~~~~~~~~ 236 (434)
. . . .....|+.+++.+.....+. .....+..+.|+| +|+.+++++.... ..|.++|+.+.....+..
T Consensus 162 ~---~-~---~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~ 233 (396)
T 3c5m_A 162 Y---H-T---NPTCRLIKVDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKE 233 (396)
T ss_dssp H---H-T---CCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSC
T ss_pred c---c-C---CCcceEEEEECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeec
Confidence 0 0 0 12345788877665333332 3356789999999 8888887654322 478899987655444422
Q ss_pred ----cCeeEEEECCCCCeEEEEecCCCC--CeEEEEEccCCEEEEEeeCCCceEEEECC-CCCEEEEEEcCCce------
Q 013871 237 ----GPYNTVRWNPKGKFLCLAGFGNLP--GDMAFWDYVDGKQLGTTRAECSVTSEWSP-DGRYFMTATTAPRL------ 303 (434)
Q Consensus 237 ----~~~~~i~~SP~g~~l~~~~~~~~~--g~i~iwd~~~~~~i~~~~~~~~~~~~wsp-dg~~l~tas~~prl------ 303 (434)
..+..+.|||||++|++++.+... +.|++||+.+++........... +.|+| ||++|++++.. ..
T Consensus 234 ~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~-~~~s~~dg~~l~~~~~~-~p~~~~~~ 311 (396)
T 3c5m_A 234 HAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPPCS-HLMSNFDGSLMVGDGCD-APVDVADA 311 (396)
T ss_dssp CCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCSEE-EEEECSSSSEEEEEECC-C-------
T ss_pred cCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCCCC-CCccCCCCceEEEecCC-cceeeccc
Confidence 246778999999988877643222 34999999888654433333333 89999 99988876531 10
Q ss_pred -----eeCCcEEEEeecCceeeeeec--c-----------cceeeEEEcCCCCCCC
Q 013871 304 -----QIDNGIKIFHHNGSLFFKKMF--D-----------KLFQAEWKPVSPDKFG 341 (434)
Q Consensus 304 -----~~D~~i~iw~~~g~~~~~~~~--~-----------~~~~~~w~p~~~~~~~ 341 (434)
.-+..|.+|+..+..+..... . ....+.|.|++..++.
T Consensus 312 ~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~ 367 (396)
T 3c5m_A 312 DSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLF 367 (396)
T ss_dssp ---CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEE
T ss_pred cccccCCCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEccCCCeEEE
Confidence 114679999986553332211 1 1455788888765543
No 163
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.74 E-value=2e-15 Score=145.52 Aligned_cols=272 Identities=8% Similarity=0.004 Sum_probs=163.3
Q ss_pred CcEEEEEc--CCCcEE--EEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCC-CCCCceeeeeec-CCeeEEEEe
Q 013871 26 KNVILWKT--ETGEAV--YQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTT-DFPKGILYRLRV-PGVAAFEVS 99 (434)
Q Consensus 26 ~~v~iWd~--~~g~~~--~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~-~~~~~~~~~~~~-~~v~~~~~s 99 (434)
+.|.+|++ .+|+.. ....... ......++|+||+++|+++..+.|.+|++. +........... .....++|+
T Consensus 14 ~~i~~~~~d~~~g~l~~~~~~~~~~--~~~~~~~a~spdg~~l~~~~~~~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~s 91 (365)
T 1jof_A 14 GAIFTVQFDDEKLTCKLIKRTEIPQ--DEPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDAD 91 (365)
T ss_dssp CEEEEEEEETTTTEEEEEEEEECCT--TCCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTT
T ss_pred CcEEEEEEECCCCCEEEeeEEccCC--CCCCcEEEECCCCCEEEEEccceEEEEEECCCCCEEEeeEeecCCCCccEEEC
Confidence 46777664 567542 2221111 123447999999998887755599999986 432211111111 224567889
Q ss_pred CCCCCeEEEEecCC------CC----CCceEEEEEcCCCCCCCceeeeee----cccceeEEEECCCCCeEEEEEEeccc
Q 013871 100 KAPGSHVAVFVPES------KG----SPASVQIYACGKDLQSQPLARRSF----FRCSTVQLNWNRGSTGLLAVAQSDVD 165 (434)
Q Consensus 100 p~~~~~ia~~~~~~------~~----~~~~v~i~~~~~~~~~~~i~~~~~----~~~~~~~~~ws~~G~~l~~~~~~~~d 165 (434)
|++ ..+.++.... .. ..+.+.+|++... +........ .......+.|+|+|++|++. +.
T Consensus 92 pdg-~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~-~~--- 164 (365)
T 1jof_A 92 TNT-RAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSET--GKLEKNVQNYEYQENTGIHGMVFDPTETYLYSA-DL--- 164 (365)
T ss_dssp SCC-EEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTT--CCEEEEEEEEECCTTCCEEEEEECTTSSEEEEE-ET---
T ss_pred CCC-CEEEEEEecCCcceeccceeecCCceEEEEccCCC--CcCcceEeeEEeCCCCcceEEEECCCCCEEEEE-cC---
Confidence 984 4322222210 00 3568999999642 333222222 23456789999999987543 11
Q ss_pred ccCceeecceeEEEEeeC-Cccee---eeecC-CCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc---ccee------
Q 013871 166 KTNQSYYGESKLNYLTTD-GTHEG---LVPLR-KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK---CRPI------ 231 (434)
Q Consensus 166 ~~~~~~~g~~~l~~l~~~-~~~~~---~v~l~-~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~---~~~~------ 231 (434)
+...++.++.. .+... .+.+. +...+..++|+|||+++++. +..++.+.+|+.+ +...
T Consensus 165 -------~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~-~~~~~~v~v~~~~~~~g~~~~~~~~~ 236 (365)
T 1jof_A 165 -------TANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYAL-MEAGNRICEYVIDPATHMPVYTHHSF 236 (365)
T ss_dssp -------TTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEE-ETTTTEEEEEEECTTTCCEEEEEEEE
T ss_pred -------CCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEE-ECCCCeEEEEEEeCCCCcEEEccceE
Confidence 11234555543 22111 12222 24568899999999988764 4556799998754 2221
Q ss_pred EEeCC-----c-------CeeEEE-ECCCCCeEEEEecCCC---CCeEEEEEcc-CCEEEE---EeeC--CCceEEEECC
Q 013871 232 LELGS-----G-------PYNTVR-WNPKGKFLCLAGFGNL---PGDMAFWDYV-DGKQLG---TTRA--ECSVTSEWSP 289 (434)
Q Consensus 232 ~~~~~-----~-------~~~~i~-~SP~g~~l~~~~~~~~---~g~i~iwd~~-~~~~i~---~~~~--~~~~~~~wsp 289 (434)
..+.. . ....++ |||||++|+++..+.. .+.|.+|+++ +++... .... .....++|+|
T Consensus 237 ~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp 316 (365)
T 1jof_A 237 PLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSP 316 (365)
T ss_dssp ESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEE
T ss_pred EcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecC
Confidence 11211 1 367899 9999999887764321 2489999986 565432 2322 2455689999
Q ss_pred ---CCCEEEEEEcCCceeeCCcEEEEeecCcee
Q 013871 290 ---DGRYFMTATTAPRLQIDNGIKIFHHNGSLF 319 (434)
Q Consensus 290 ---dg~~l~tas~~prl~~D~~i~iw~~~g~~~ 319 (434)
||++|+++... ++.|+||++++..+
T Consensus 317 ~~~dg~~l~v~~~~-----~~~v~v~~~~~~~l 344 (365)
T 1jof_A 317 CPWSDEWMAITDDQ-----EGWLEIYRWKDEFL 344 (365)
T ss_dssp CTTCTTEEEEECSS-----SCEEEEEEEETTEE
T ss_pred CCcCCCEEEEEEcC-----CCeEEEEEEchhhC
Confidence 89999999873 58999999987644
No 164
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.73 E-value=5.7e-15 Score=142.38 Aligned_cols=243 Identities=8% Similarity=-0.029 Sum_probs=149.2
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcC-CCcEEEEEeecCcCCCCCCeeeecCCCcE--EEEe-----------
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTE-TGEAVYQLFQKNMTKTTWPSIRFSSDEAV--ACRM----------- 67 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~-~g~~~~~~~~~~~~~~~~~~~~~S~d~~~--la~~----------- 67 (434)
+..++|||||++|++.+ .+ .|.+|++. +|+.+....... . .....++|+|||++ ++.+
T Consensus 42 ~~~~a~spdg~~l~~~~-----~~-~v~~~~~~~~g~~~~~~~~~~-~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~ 113 (365)
T 1jof_A 42 ISWMTFDHERKNIYGAA-----MK-KWSSFAVKSPTEIVHEASHPI-G-GHPRANDADTNTRAIFLLAAKQPPYAVYANP 113 (365)
T ss_dssp CSEEEECTTSSEEEEEE-----BT-EEEEEEEEETTEEEEEEEEEC-C-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEE
T ss_pred CcEEEECCCCCEEEEEc-----cc-eEEEEEECCCCCEEEeeEeec-C-CCCccEEECCCCCEEEEEEecCCcceeccce
Confidence 45799999999999887 45 89999997 887654333211 1 12336899999994 4443
Q ss_pred ---cCCeEEEEeCCC-CCCceeeee----ecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcC-CCCCCCce--ee
Q 013871 68 ---ATNEIQFFDTTD-FPKGILYRL----RVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACG-KDLQSQPL--AR 136 (434)
Q Consensus 68 ---~~~~i~v~~~~~-~~~~~~~~~----~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~-~~~~~~~i--~~ 136 (434)
.++.+.+|++.. ......... ....+..+.|||++ ..+.+- +. ....|.+|++. + ++.. ..
T Consensus 114 ~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG-~~l~~~--~~--~~~~v~~~~~~~~---g~~~~~~~ 185 (365)
T 1jof_A 114 FYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTE-TYLYSA--DL--TANKLWTHRKLAS---GEVELVGS 185 (365)
T ss_dssp ESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTS-SEEEEE--ET--TTTEEEEEEECTT---SCEEEEEE
T ss_pred eecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCC-CEEEEE--cC--CCCEEEEEEECCC---CCEEEeee
Confidence 367899999864 322111121 23468899999994 444332 11 23589999997 4 3322 22
Q ss_pred eee--cccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeC-Ccce---eeee-cCC--CC---------Ce
Q 013871 137 RSF--FRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTD-GTHE---GLVP-LRK--EG---------PV 198 (434)
Q Consensus 137 ~~~--~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~-~~~~---~~v~-l~~--~~---------~i 198 (434)
... +......+.|+|+|++|++... .+.. ..++.++.. +... ..+. +.. .+ .+
T Consensus 186 ~~~~~~g~~p~~~~~spdg~~l~v~~~--~~~~-------v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 256 (365)
T 1jof_A 186 VDAPDPGDHPRWVAMHPTGNYLYALME--AGNR-------ICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYR 256 (365)
T ss_dssp EECSSTTCCEEEEEECTTSSEEEEEET--TTTE-------EEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEE
T ss_pred EecCCCCCCCCEeEECCCCCEEEEEEC--CCCe-------EEEEEEeCCCCcEEEccceEEcCCCCcCCccccccccccc
Confidence 221 2345678999999998765421 1111 123333321 2111 1111 211 11 47
Q ss_pred EEEE-ECcCCCEEEEEEccCC----CeEEEEecc-cceeEE----e--CCcCeeEEEECC---CCCeEEEEecCCCCCeE
Q 013871 199 HDVQ-WSYSGSEFAVVYGFMP----ASATIFNKK-CRPILE----L--GSGPYNTVRWNP---KGKFLCLAGFGNLPGDM 263 (434)
Q Consensus 199 ~~v~-wspdg~~~av~~g~~~----~~v~l~d~~-~~~~~~----~--~~~~~~~i~~SP---~g~~l~~~~~~~~~g~i 263 (434)
..++ |+|||+++++.....+ +.|.+|++. ...+.. . +......++|+| ||++|++++.++ +.|
T Consensus 257 ~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~--~~v 334 (365)
T 1jof_A 257 ADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQE--GWL 334 (365)
T ss_dssp EEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSS--CEE
T ss_pred ccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCC--CeE
Confidence 8999 9999998876432222 289999984 222221 2 333456899999 899999987542 699
Q ss_pred EEEEccCC
Q 013871 264 AFWDYVDG 271 (434)
Q Consensus 264 ~iwd~~~~ 271 (434)
.+|+++..
T Consensus 335 ~v~~~~~~ 342 (365)
T 1jof_A 335 EIYRWKDE 342 (365)
T ss_dssp EEEEEETT
T ss_pred EEEEEchh
Confidence 99998765
No 165
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.72 E-value=2e-14 Score=137.89 Aligned_cols=261 Identities=10% Similarity=0.048 Sum_probs=152.8
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCC--CcE--EEEEeecCcCCCCCCeeeecCCCcEEEEe--cCCeEEEE
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTET--GEA--VYQLFQKNMTKTTWPSIRFSSDEAVACRM--ATNEIQFF 75 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~--g~~--~~~~~~~~~~~~~~~~~~~S~d~~~la~~--~~~~i~v~ 75 (434)
+..|+|||||++|++.+... ..++.|.+|++.. |+. +....... .....+++ |+++|+.+ .++.|.+|
T Consensus 52 p~~l~~spdg~~l~~~~~~~-~~~~~v~~~~~~~~~g~~~~~~~~~~~~---~~p~~~~~--dg~~l~~~~~~~~~v~~~ 125 (361)
T 3scy_A 52 PSYLIPSADGKFVYSVNEFS-KDQAAVSAFAFDKEKGTLHLLNTQKTMG---ADPCYLTT--NGKNIVTANYSGGSITVF 125 (361)
T ss_dssp CCSEEECTTSSEEEEEECCS-STTCEEEEEEEETTTTEEEEEEEEECSS---SCEEEEEE--CSSEEEEEETTTTEEEEE
T ss_pred CceEEECCCCCEEEEEEccC-CCCCcEEEEEEeCCCCcEEEeeEeccCC---CCcEEEEE--CCCEEEEEECCCCEEEEE
Confidence 35789999999999988321 1237899998865 543 22322211 22224555 88877766 35799999
Q ss_pred eCCCCCCceee--eee------------cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCC----Ccee--
Q 013871 76 DTTDFPKGILY--RLR------------VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQS----QPLA-- 135 (434)
Q Consensus 76 ~~~~~~~~~~~--~~~------------~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~----~~i~-- 135 (434)
++......... ... ...+..+.|+|++ ..+.+.. ...+.|.+|++.... . +.+.
T Consensus 126 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg-~~l~~~~----~~~~~v~v~~~~~~~-~~~~~~~l~~~ 199 (361)
T 3scy_A 126 PIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDG-KYLLADD----LGTDQIHKFNINPNA-NADNKEKFLTK 199 (361)
T ss_dssp EBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTS-SEEEEEE----TTTTEEEEEEECTTC-CTTTCCCCEEE
T ss_pred EeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCC-CEEEEEe----CCCCEEEEEEEcCCC-Ccccccceeec
Confidence 98653221111 111 1234679999994 4333321 234689999987531 1 1011
Q ss_pred ----e-eeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcce-ee--eec--CCCCCeEEEEECc
Q 013871 136 ----R-RSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHE-GL--VPL--RKEGPVHDVQWSY 205 (434)
Q Consensus 136 ----~-~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~-~~--v~l--~~~~~i~~v~wsp 205 (434)
. ..........+.|+|+|+.+++... .+.. +..++...... .. +.. .......+++|+|
T Consensus 200 ~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~--~~~~---------v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~sp 268 (361)
T 3scy_A 200 GTPEAFKVAPGSGPRHLIFNSDGKFAYLINE--IGGT---------VIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSP 268 (361)
T ss_dssp EEEEEEECCTTCCEEEEEECTTSSEEEEEET--TTCE---------EEEEEEETTEEEEEEEEESCSSCCCCEEEEEECT
T ss_pred ccccceecCCCCCCeEEEEcCCCCEEEEEcC--CCCe---------EEEEEecCCceEEeEEEecCCCCCCCcccEEECC
Confidence 1 1112334568999999998766421 1111 23333222211 11 111 1123467999999
Q ss_pred CCCEEEEEEccC-CCeEEEEecc--c-c--eeEEeC-CcCeeEEEECCCCCeEEEEecCCCCCeEEEE--EccCCEEEEE
Q 013871 206 SGSEFAVVYGFM-PASATIFNKK--C-R--PILELG-SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFW--DYVDGKQLGT 276 (434)
Q Consensus 206 dg~~~av~~g~~-~~~v~l~d~~--~-~--~~~~~~-~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iw--d~~~~~~i~~ 276 (434)
||+++++. ... ++.+.+|++. . . .+..+. ......++|||||++|++++.++ +.|.+| |.++++....
T Consensus 269 dg~~l~v~-~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~~--~~v~v~~~d~~~g~~~~~ 345 (361)
T 3scy_A 269 DGKYLYAS-NRLKADGVAIFKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVACRDT--NVIQIFERDQATGLLTDI 345 (361)
T ss_dssp TSSEEEEE-ECSSSCEEEEEEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEEETTT--TEEEEEEECTTTCCEEEC
T ss_pred CCCEEEEE-CCCCCCEEEEEEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEEECCC--CCEEEEEEECCCCcEeec
Confidence 99988763 444 5799999984 2 2 222332 34567899999999999887543 689996 5557765543
Q ss_pred e---eCCCceEEEEC
Q 013871 277 T---RAECSVTSEWS 288 (434)
Q Consensus 277 ~---~~~~~~~~~ws 288 (434)
. ..+.++++.|.
T Consensus 346 ~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 346 KKDIKVDKPVCLKFV 360 (361)
T ss_dssp SCCEECSSEEEEEEE
T ss_pred ceeeeCCCCeEEEEc
Confidence 2 33467777775
No 166
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.71 E-value=1e-14 Score=139.00 Aligned_cols=271 Identities=10% Similarity=0.082 Sum_probs=164.1
Q ss_pred cceEEecCCCcEEEEEecCC----CCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC----C--e
Q 013871 2 LLLLTCLRVGLIIQTFQKSS----TPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT----N--E 71 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~----~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~----~--~ 71 (434)
+..++| ||++|+...... ...+.+|.+||+.+++. ..+ . . +..++|||||++|++... + .
T Consensus 17 ~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~l-~-----~-~~~~~~SpDg~~la~~~~~~~~~~~~ 86 (347)
T 2gop_A 17 LSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNAR-RFI-E-----N-ATMPRISPDGKKIAFMRANEEKKVSE 86 (347)
T ss_dssp EEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCE-EEE-E-----S-CEEEEECTTSSEEEEEEEETTTTEEE
T ss_pred cccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCce-EEc-c-----c-CCCeEECCCCCEEEEEEeccCCCcce
Confidence 345677 999998754211 11256899999998875 333 1 2 237899999999998742 3 4
Q ss_pred EEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCC-C---------------------CCCceEEEEEcCCCC
Q 013871 72 IQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPES-K---------------------GSPASVQIYACGKDL 129 (434)
Q Consensus 72 i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~-~---------------------~~~~~v~i~~~~~~~ 129 (434)
|.+|++........... .. +..+.|||+ +..|++...+. . .....|.+|++..
T Consensus 87 l~~~~~~~g~~~~l~~~-~~-~~~~~wspd-g~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~-- 161 (347)
T 2gop_A 87 IWVADLETLSSKKILEA-KN-IRSLEWNED-SRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTES-- 161 (347)
T ss_dssp EEEEETTTTEEEEEEEE-SE-EEEEEECTT-SSEEEEEEECCCC---------CCCC---------CEEEEEEEETTT--
T ss_pred EEEEECCCCceEEEEcC-CC-ccceeECCC-CCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCC--
Confidence 77788765332111111 22 889999999 55565543220 0 1135688888865
Q ss_pred CCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCE
Q 013871 130 QSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSE 209 (434)
Q Consensus 130 ~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~ 209 (434)
++.+..+.. . ....+.|+|+| +++.+..+.+.. ...+...||.++ .+. ...+.- . +.+.. +||||+.
T Consensus 162 -~~~~~~l~~-~-~~~~~~~spdg--~~~~~~~~~~~~--~~~~~~~l~~~d-~~~-~~~l~~-~-~~~~~--~spdg~~ 228 (347)
T 2gop_A 162 -EEVIEEFEK-P-RFSSGIWHRDK--IVVNVPHREIIP--QYFKFWDIYIWE-DGK-EEKMFE-K-VSFYA--VDSDGER 228 (347)
T ss_dssp -TEEEEEEEE-E-TTCEEEEETTE--EEEEEECCCSSC--CSSCCEEEEEEE-TTE-EEEEEE-E-ESEEE--EEECSSC
T ss_pred -CeEEeeecC-C-CcccccCCCCe--EEEEEecccccc--cccccccEEEeC-CCc-eEEecc-C-cceee--ECCCCCE
Confidence 444344444 3 67789999999 555443221100 000133578777 332 222221 2 44444 4999999
Q ss_pred EEEEEccC------CCeEEEEecccceeEEe---CCcCeeE-EEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC
Q 013871 210 FAVVYGFM------PASATIFNKKCRPILEL---GSGPYNT-VRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA 279 (434)
Q Consensus 210 ~av~~g~~------~~~v~l~d~~~~~~~~~---~~~~~~~-i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~ 279 (434)
+++++... ...|.+|| .+. ...+ +...+.. +.|+ || +++++. .+|.+.|| +.+++......+
T Consensus 229 l~~~~~~~~~~~~~~~~l~~~d-~~~-~~~l~~~~~~~~~~~~~~s-dg-~~~~~~---~~~~~~l~-~~~g~~~~~~~~ 300 (347)
T 2gop_A 229 ILLYGKPEKKYMSEHNKLYIYD-GKE-VMGILDEVDRGVGQAKIKD-GK-VYFTLF---EEGSVNLY-IWDGEIKPIAKG 300 (347)
T ss_dssp EEEEECCSSSCCCSSCEEEEEC-SSC-EEESSTTCCSEEEEEEEET-TE-EEEEEE---ETTEEEEE-EESSSEEEEECS
T ss_pred EEEEEccccCCccccceEEEEC-CCc-eEeccccCCcccCCccEEc-Cc-EEEEEe---cCCcEEEE-EcCCceEEEecC
Confidence 98765332 24788888 443 3333 2455665 8999 98 777776 44688998 876655444443
Q ss_pred C-CceEEEECCCCCEEEEEEcCCceeeCCcE-EEEeecC
Q 013871 280 E-CSVTSEWSPDGRYFMTATTAPRLQIDNGI-KIFHHNG 316 (434)
Q Consensus 280 ~-~~~~~~wspdg~~l~tas~~prl~~D~~i-~iw~~~g 316 (434)
. .+..++|+| +.+++++. ++.. .||.++|
T Consensus 301 ~~~v~~~~~s~--~~~~~~~~------~~~~~~l~~~~g 331 (347)
T 2gop_A 301 RHWIMGFDVDE--IVVYLKET------ATRLRELFTWDG 331 (347)
T ss_dssp SSEEEEEEESS--SEEEEEEC------SSSCCEEEEESS
T ss_pred CCeEEeeeeeC--cEEEEEcC------CCChHHheEeCC
Confidence 3 445699999 67777776 5543 7777763
No 167
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.70 E-value=4.8e-15 Score=154.11 Aligned_cols=290 Identities=8% Similarity=-0.027 Sum_probs=168.2
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCC---------eeeec--CCCcE-EEEecC
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWP---------SIRFS--SDEAV-ACRMAT 69 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~---------~~~~S--~d~~~-la~~~~ 69 (434)
|..++||+++-++++..+. .++...||.+..+.....+.... ..+. .+.|+ |||++ |++..+
T Consensus 26 ~~~~~~s~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~ 99 (662)
T 3azo_A 26 PACVGAVGDEVWWVAPRPA---EAGRATLVRRRADGAEESALPAP---WNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHF 99 (662)
T ss_dssp CEEEEEETTEEEEEEEETT---TTTEEEEEEECTTSCEEESSCTT---CCBCCCGGGTCCCCEEEECCSSSSCEEEEEBT
T ss_pred cceeEEcCCeEEEEecCcc---cCCcEEEEEECCCCCcceeCCCC---ccccccccccCCccceeeeecCCCeEEEEEEC
Confidence 6788999887777665311 46788999865444455554432 2222 45566 99998 888765
Q ss_pred --CeEEEEeCC--C-CCCceeeee-----ecCCeeEEEEeCCCCCeEEEEecCC-----CCCCceEEEEEcCCCC--CCC
Q 013871 70 --NEIQFFDTT--D-FPKGILYRL-----RVPGVAAFEVSKAPGSHVAVFVPES-----KGSPASVQIYACGKDL--QSQ 132 (434)
Q Consensus 70 --~~i~v~~~~--~-~~~~~~~~~-----~~~~v~~~~~sp~~~~~ia~~~~~~-----~~~~~~v~i~~~~~~~--~~~ 132 (434)
..|.+++.. . ... ..... +...+..++|||+ +..|++...+. ......|.+|++.... ...
T Consensus 100 ~~~~l~~~~~~~~g~~~~-~~l~~~~~~~~~~~~~~~~~spD-g~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 177 (662)
T 3azo_A 100 GDQRLYAFEPDAPGGAVP-RPLTPVSAVGGGLRWADPVLLPE-RGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRS 177 (662)
T ss_dssp TTCCEEEECTTSTTCCCC-EECSCCCCSTTCEEEEEEEEETT-TTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGG
T ss_pred CCCeEEEEcCCCCCCCCC-EeccCCccCCCCccccCcEECCC-CCEEEEEEecccCCCCCCceeEEEEEECCCCccccCC
Confidence 467777665 1 221 11111 1234778999999 45555443221 0222478888876410 002
Q ss_pred ceeeee-ecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCC-c---ceeeeecCCCCCeEEEEECcCC
Q 013871 133 PLARRS-FFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDG-T---HEGLVPLRKEGPVHDVQWSYSG 207 (434)
Q Consensus 133 ~i~~~~-~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~-~---~~~~v~l~~~~~i~~v~wspdg 207 (434)
....+. ........+.|||||+.|++.... .....| +...|+.+++.+ + ....+.-.+...+..++|+|||
T Consensus 178 ~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~---~~~~~~-~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg 253 (662)
T 3azo_A 178 AVRELSDDAHRFVTGPRLSPDGRQAVWLAWD---HPRMPW-EGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDG 253 (662)
T ss_dssp GSEESSCSCSSEECCCEECTTSSEEEEEEEC---TTCCTT-TCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTS
T ss_pred ceeEEEecCCCcccCceECCCCCEEEEEECC---CCCCCC-CCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCC
Confidence 333443 334455678999999998775422 222211 234688888873 3 2223332235789999999999
Q ss_pred CEEEEEEccCCC--eEEEEecccceeEEe---CCcC--------eeEEEECCCCCeEEEEecCCCCCeEEEE--EccCCE
Q 013871 208 SEFAVVYGFMPA--SATIFNKKCRPILEL---GSGP--------YNTVRWNPKGKFLCLAGFGNLPGDMAFW--DYVDGK 272 (434)
Q Consensus 208 ~~~av~~g~~~~--~v~l~d~~~~~~~~~---~~~~--------~~~i~~SP~g~~l~~~~~~~~~g~i~iw--d~~~~~ 272 (434)
+ ++++ +..++ .|.+||+.+.....+ +... +..++|+|+|++++++. . |.+.|| |..+++
T Consensus 254 ~-l~~~-~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~---~-~~~~l~~~d~~~~~ 327 (662)
T 3azo_A 254 S-LIVA-TDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHG---K-GAAVLGILDPESGE 327 (662)
T ss_dssp C-EEEE-ECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEB---S-SSCEEEEEETTTTE
T ss_pred e-EEEE-ECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEE---c-CccEEEEEECCCCc
Confidence 9 5553 45566 777788754444433 1111 46789999999988886 3 566777 666666
Q ss_pred EEEEeeCC-CceEEEECCCCCEEEEEEcCCceeeCCcEEEEee
Q 013871 273 QLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH 314 (434)
Q Consensus 273 ~i~~~~~~-~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~ 314 (434)
+..+..+ ......|++||..++..+..+ +....||.+
T Consensus 328 -~~~l~~~~~~~~~~~s~~~~~~~~~~~~~----~~~~~i~~~ 365 (662)
T 3azo_A 328 -LVDAAGPWTEWAATLTVSGTRAVGVAASP----RTAYEVVEL 365 (662)
T ss_dssp -EEECCSSCCEEEEEEEEETTEEEEEEEET----TEEEEEEEE
T ss_pred -EEEecCCCCeEEEEEecCCCEEEEEEcCC----CCCCEEEEE
Confidence 4455444 222322377776655444311 444455544
No 168
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.68 E-value=4.9e-14 Score=133.77 Aligned_cols=245 Identities=9% Similarity=-0.027 Sum_probs=148.9
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcC---CCCCCeeeecCCCcEEEEec----------
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMT---KTTWPSIRFSSDEAVACRMA---------- 68 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~---~~~~~~~~~S~d~~~la~~~---------- 68 (434)
+..++|||+|++|+.... .++.|.+||+.+++.+..+...... ......++|+|||++++.+.
T Consensus 45 ~~~~~~s~dg~~~~v~~~----~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~ 120 (349)
T 1jmx_B 45 PGTAMMAPDNRTAYVLNN----HYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHY 120 (349)
T ss_dssp SCEEEECTTSSEEEEEET----TTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCE
T ss_pred CceeEECCCCCEEEEEeC----CCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEccccccccccc
Confidence 457899999998766551 4688999999999888776543100 12244889999999988875
Q ss_pred ---CCeEEEEeCCCCCCcee-eeee-cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeeccc-
Q 013871 69 ---TNEIQFFDTTDFPKGIL-YRLR-VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRC- 142 (434)
Q Consensus 69 ---~~~i~v~~~~~~~~~~~-~~~~-~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~- 142 (434)
++.|.+||+.+...... .... ...+..++|+|++. .++ . . ..|.+|++.+ ++.+........
T Consensus 121 ~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l~~--~-~-----~~i~~~d~~~---~~~~~~~~~~~~~ 188 (349)
T 1jmx_B 121 VVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-LYV--A-G-----PDIYKMDVKT---GKYTVALPLRNWN 188 (349)
T ss_dssp EECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-EEE--E-S-----SSEEEECTTT---CCEEEEECSTTCC
T ss_pred ccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc-EEE--c-c-----CcEEEEeCCC---CceeccccccccC
Confidence 48999999876321111 1122 23578889999954 332 1 1 2388998876 444443332210
Q ss_pred -----------------------ceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecC-CCCCe
Q 013871 143 -----------------------STVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR-KEGPV 198 (434)
Q Consensus 143 -----------------------~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~-~~~~i 198 (434)
....+.+++++..... .+.+...+..++........+.+. ....+
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (349)
T 1jmx_B 189 RKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPA-----------TADLLYGYLSVDLKTGKTHTQEFADLTELY 257 (349)
T ss_dssp CTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------C-----------CCEEEEEEEEEETTTCCEEEEEEEECSSCE
T ss_pred CccccCccceeeecCCCcceeEEeeeeeeecCCCcCCcc-----------ccccceeEEEEeccCCcEEecccccCCCcc
Confidence 0111223322211000 000001111122222211112111 24567
Q ss_pred EEEEECc-CCCEEEEEEccCCCeEEEEeccccee-EEe-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEE
Q 013871 199 HDVQWSY-SGSEFAVVYGFMPASATIFNKKCRPI-LEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLG 275 (434)
Q Consensus 199 ~~v~wsp-dg~~~av~~g~~~~~v~l~d~~~~~~-~~~-~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~ 275 (434)
..++|+| ||+.+++. ++.|.+||++...+ ..+ .......++|+|+|++|++++ .++.|.+||+++++.+.
T Consensus 258 ~~~~~sp~dg~~l~~~----~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~---~~~~v~v~d~~~~~~~~ 330 (349)
T 1jmx_B 258 FTGLRSPKDPNQIYGV----LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGG---TFNDLAVFNPDTLEKVK 330 (349)
T ss_dssp EEEEECSSCTTEEEEE----ESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEES---BSSEEEEEETTTTEEEE
T ss_pred eeeEecCCCCCEEEEE----cCeEEEEECccCeEEEEEcCCCCccceEECCCCCEEEEec---CCCeEEEEeccccceee
Confidence 8999999 99998864 56999999975443 333 334567899999999888865 34799999999999888
Q ss_pred EeeCC
Q 013871 276 TTRAE 280 (434)
Q Consensus 276 ~~~~~ 280 (434)
.+..+
T Consensus 331 ~~~~~ 335 (349)
T 1jmx_B 331 NIKLP 335 (349)
T ss_dssp EEECS
T ss_pred eeecC
Confidence 77554
No 169
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.65 E-value=1.4e-13 Score=144.48 Aligned_cols=292 Identities=11% Similarity=-0.045 Sum_probs=172.1
Q ss_pred cCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecC---cCCCCCCeeeecCCCcEEEEecC--C----eEEEEeCC
Q 013871 8 LRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKN---MTKTTWPSIRFSSDEAVACRMAT--N----EIQFFDTT 78 (434)
Q Consensus 8 SP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~---~~~~~~~~~~~S~d~~~la~~~~--~----~i~v~~~~ 78 (434)
+|||++++......+.....|.+.+..+++...-+.... .+...+..++|||||++||++.+ + +|++||+.
T Consensus 80 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~ 159 (710)
T 2xdw_A 80 FKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVD 159 (710)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETT
T ss_pred EEECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECC
Confidence 599999987664322222345555555554322221111 01113447899999999998732 2 89999998
Q ss_pred CCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCC-----------CCCceEEEEEcCCCCCCCce--eeeee--cccc
Q 013871 79 DFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESK-----------GSPASVQIYACGKDLQSQPL--ARRSF--FRCS 143 (434)
Q Consensus 79 ~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~-----------~~~~~v~i~~~~~~~~~~~i--~~~~~--~~~~ 143 (434)
+.... ...+....+..++|||| +..|++...... ..+..|.+|++.+ ++.. ..... +...
T Consensus 160 tg~~~-~~~~~~~~~~~~~wspD-g~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t---~~~~~~~v~~~~~~~~~ 234 (710)
T 2xdw_A 160 GAKEL-PDVLERVKFSCMAWTHD-GKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGT---DQSEDILCAEFPDEPKW 234 (710)
T ss_dssp TTEEE-EEEEEEECSCCEEECTT-SSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTS---CGGGCEEEECCTTCTTC
T ss_pred CCCCC-cccccCcccceEEEEeC-CCEEEEEEECCccccccccccccCCCCEEEEEECCC---CcccceEEeccCCCCeE
Confidence 74431 11222223667999999 455554433222 2255799999866 3321 11111 2223
Q ss_pred eeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCC------cc--eeeeecCCCCCeEEEEECcCCCEEEEEEc
Q 013871 144 TVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDG------TH--EGLVPLRKEGPVHDVQWSYSGSEFAVVYG 215 (434)
Q Consensus 144 ~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~------~~--~~~v~l~~~~~i~~v~wspdg~~~av~~g 215 (434)
...+.|+|||++|++......+ ....||++++.+ .. ...+.. ....+.. .|+|+|+.|++.+.
T Consensus 235 ~~~~~~SpDg~~l~~~~~~~~~-------~~~~l~~~d~~~~~~~~~~~~~~~~l~~-~~~~~~~-~~s~dg~~l~~~s~ 305 (710)
T 2xdw_A 235 MGGAELSDDGRYVLLSIREGCD-------PVNRLWYCDLQQESNGITGILKWVKLID-NFEGEYD-YVTNEGTVFTFKTN 305 (710)
T ss_dssp EEEEEECTTSCEEEEEEECSSS-------SCCEEEEEEGGGSSSSSCSSCCCEEEEC-SSSSCEE-EEEEETTEEEEEEC
T ss_pred EEEEEEcCCCCEEEEEEEccCC-------CccEEEEEECcccccccCCccceEEeeC-CCCcEEE-EEeccCCEEEEEEC
Confidence 5688999999998876532211 123577777654 21 222222 2333433 58999999998754
Q ss_pred cC--CCeEEEEecccce---eEEe--CC--cCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceE
Q 013871 216 FM--PASATIFNKKCRP---ILEL--GS--GPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVT 284 (434)
Q Consensus 216 ~~--~~~v~l~d~~~~~---~~~~--~~--~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~ 284 (434)
.. ...|.+||+.... ...+ +. ..+..+.|++++.+++++..+ ....|++||+.+++.+..+..+ .+..
T Consensus 306 ~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~-g~~~l~~~~~~~g~~~~~l~~~~~~v~~ 384 (710)
T 2xdw_A 306 RHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHD-VKNTLQLHDLATGALLKIFPLEVGSVVG 384 (710)
T ss_dssp TTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEET-TEEEEEEEETTTCCEEEEECCCSSEEEE
T ss_pred CCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEEC-CEEEEEEEECCCCCEEEecCCCCceEEE
Confidence 32 2379999986432 1222 22 257789999777777666532 2235778888777766666544 3445
Q ss_pred EEECCCCCEEEEEEcCCceeeCCcEEEEeecC
Q 013871 285 SEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG 316 (434)
Q Consensus 285 ~~wspdg~~l~tas~~prl~~D~~i~iw~~~g 316 (434)
+.++||+..|+...+++. ....|.+||+..
T Consensus 385 ~~~s~d~~~l~~~~ss~~--~P~~i~~~d~~t 414 (710)
T 2xdw_A 385 YSGQKKDTEIFYQFTSFL--SPGIIYHCDLTK 414 (710)
T ss_dssp EECCTTCSEEEEEEECSS--CCCEEEEEETTS
T ss_pred EecCCCCCEEEEEEeCCC--CCCEEEEEECCC
Confidence 899999987775544221 157889999853
No 170
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.64 E-value=6e-15 Score=145.76 Aligned_cols=137 Identities=13% Similarity=0.192 Sum_probs=108.7
Q ss_pred CCCCeEEEEECcCCCEEEEE--EccCCCeEEEEecccc---------e---eEEe--CCcCeeEEEECCC-CCeEEEEec
Q 013871 194 KEGPVHDVQWSYSGSEFAVV--YGFMPASATIFNKKCR---------P---ILEL--GSGPYNTVRWNPK-GKFLCLAGF 256 (434)
Q Consensus 194 ~~~~i~~v~wspdg~~~av~--~g~~~~~v~l~d~~~~---------~---~~~~--~~~~~~~i~~SP~-g~~l~~~~~ 256 (434)
..+.|.+++|+|+|+.|+++ +|..++.|++||++.. . +..+ |...+++++|+|+ +++|++++
T Consensus 91 ~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s- 169 (434)
T 2oit_A 91 MKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCL- 169 (434)
T ss_dssp CSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEE-
T ss_pred CCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEE-
Confidence 35789999999999999875 5788999999998532 1 2222 5789999999998 78999998
Q ss_pred CCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceeeee--ec-------c
Q 013871 257 GNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKK--MF-------D 325 (434)
Q Consensus 257 ~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~~~~~--~~-------~ 325 (434)
.+|+|++||++++..+.....| .+..++|+|||++|++++. |+.|+|||..++..... +. .
T Consensus 170 --~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 241 (434)
T 2oit_A 170 --ADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQ------NGTVVQYLPTLQEKKVIPCPPFYESDHPV 241 (434)
T ss_dssp --TTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEET------TSCEEEECTTCCEEEEECCCTTCCTTSCE
T ss_pred --CCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcC------CCcEEEEccCCcccccccCCcccCCCCce
Confidence 5679999999998766555443 6777999999999999999 99999999986654332 11 1
Q ss_pred cceeeEEEcCCCCC
Q 013871 326 KLFQAEWKPVSPDK 339 (434)
Q Consensus 326 ~~~~~~w~p~~~~~ 339 (434)
.+..+.|.|....+
T Consensus 242 ~v~~v~w~~~~~~l 255 (434)
T 2oit_A 242 RVLDVLWIGTYVFA 255 (434)
T ss_dssp EEEEEEEEETTEEE
T ss_pred eEEEEEEecCceEE
Confidence 67899999876554
No 171
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.63 E-value=1.9e-13 Score=143.48 Aligned_cols=255 Identities=9% Similarity=-0.032 Sum_probs=158.1
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC-Ce---------
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT-NE--------- 71 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~-~~--------- 71 (434)
+..++|||||++|+......+.....|+|||+.+|+.+...... ..+..+.|||||+.|+++.. +.
T Consensus 127 ~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~----~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~ 202 (710)
T 2xdw_A 127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER----VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTET 202 (710)
T ss_dssp EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE----ECSCCEEECTTSSEEEEEECCCCSSCCSSSCC
T ss_pred EEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC----cccceEEEEeCCCEEEEEEECCcccccccccc
Confidence 45789999999999877544444458999999999876543222 12337899999998888742 23
Q ss_pred -------EEEEeCCCCCCceeeeee----cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCC----CCCceee
Q 013871 72 -------IQFFDTTDFPKGILYRLR----VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDL----QSQPLAR 136 (434)
Q Consensus 72 -------i~v~~~~~~~~~~~~~~~----~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~----~~~~i~~ 136 (434)
|.+|++............ ...+..+.|||+ +..|++...........|.+|++.... .......
T Consensus 203 ~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpD-g~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 281 (710)
T 2xdw_A 203 STNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDD-GRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVK 281 (710)
T ss_dssp CCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTT-SCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEE
T ss_pred ccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCC-CCEEEEEEEccCCCccEEEEEECcccccccCCccceEE
Confidence 999998764321111112 123678999999 556655543322225688999986410 0113344
Q ss_pred eeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcce---eeeecCCC-CCeEEEEECcCCCEEEE
Q 013871 137 RSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHE---GLVPLRKE-GPVHDVQWSYSGSEFAV 212 (434)
Q Consensus 137 ~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~---~~v~l~~~-~~i~~v~wspdg~~~av 212 (434)
+....... ...|+++|+.|++.+..+ . ....|+.+++.+... ..+.-... ..+.+++|++++ .+++
T Consensus 282 l~~~~~~~-~~~~s~dg~~l~~~s~~~--~------~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~lv~ 351 (710)
T 2xdw_A 282 LIDNFEGE-YDYVTNEGTVFTFKTNRH--S------PNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSN-FLVL 351 (710)
T ss_dssp EECSSSSC-EEEEEEETTEEEEEECTT--C------TTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTT-EEEE
T ss_pred eeCCCCcE-EEEEeccCCEEEEEECCC--C------CCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCC-EEEE
Confidence 44333333 335899999988764321 1 122477777655421 22222212 367889999654 4544
Q ss_pred EEccCCC--eEEEEec-ccceeEEe--CCcCeeEEEECCCCCeEEEE-ecCCCCCeEEEEEccCCE
Q 013871 213 VYGFMPA--SATIFNK-KCRPILEL--GSGPYNTVRWNPKGKFLCLA-GFGNLPGDMAFWDYVDGK 272 (434)
Q Consensus 213 ~~g~~~~--~v~l~d~-~~~~~~~~--~~~~~~~i~~SP~g~~l~~~-~~~~~~g~i~iwd~~~~~ 272 (434)
. ...++ .|.+||+ .+..+..+ +.+.+..+.++|+++.|++. +.....+.|++||+.+++
T Consensus 352 ~-~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 352 C-YLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp E-EEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred E-EEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 3 44455 5677787 45544444 56667889999999866544 333457899999998765
No 172
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.63 E-value=2e-13 Score=131.48 Aligned_cols=293 Identities=10% Similarity=0.072 Sum_probs=172.7
Q ss_pred CCCcEEEEEecCCC-CCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-----------CCeEEEEe
Q 013871 9 RVGLIIQTFQKSST-PQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-----------TNEIQFFD 76 (434)
Q Consensus 9 P~g~~L~t~~~~~~-~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-----------~~~i~v~~ 76 (434)
|++++|........ ..|+.|.+||..+++.+.++.... . +.++||||+++++.+. ++.|.+||
T Consensus 13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~---~--p~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d 87 (361)
T 2oiz_A 13 PQENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAF---N--GHVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWD 87 (361)
T ss_dssp CGGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCE---E--EEEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEE
T ss_pred CCCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCC---C--CceEECCCCCEEEEEEecccccccCCCCCEEEEEE
Confidence 47888877652211 136799999999999888776542 2 2789999999888764 35799999
Q ss_pred CCCCCCceeeeee------cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceee-eeecccceeEEEE
Q 013871 77 TTDFPKGILYRLR------VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLAR-RSFFRCSTVQLNW 149 (434)
Q Consensus 77 ~~~~~~~~~~~~~------~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~-~~~~~~~~~~~~w 149 (434)
...........+. ......+.++|++ .++.+... +..+.|.+|++.+ .+.+.. ..... ...+..
T Consensus 88 ~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg-~~l~v~n~---~~~~~v~v~d~~~---~~~~~~~i~~~~--~~~v~~ 158 (361)
T 2oiz_A 88 ADKLTFEKEISLPPKRVQGLNYDGLFRQTTDG-KFIVLQNA---SPATSIGIVDVAK---GDYVEDVTAAAG--CWSVIP 158 (361)
T ss_dssp TTTCCEEEEEEECTTBCCBCCCGGGEEECTTS-SEEEEEEE---SSSEEEEEEETTT---TEEEEEEGGGTT--EEEEEE
T ss_pred CcCCcEEEEEEcCccccccCCCcceEEECCCC-CEEEEECC---CCCCeEEEEECCC---CcEEEEEecCCC--cceeEE
Confidence 8765432222221 1245678999994 44433221 1246899999987 555544 32211 111233
Q ss_pred CCCCCeEEEEEEecccccCceeecceeEEEEeeC--Ccce------eeeecCCCCCeEEEEECcCCCEEEEEEccCCCeE
Q 013871 150 NRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTD--GTHE------GLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASA 221 (434)
Q Consensus 150 s~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~--~~~~------~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v 221 (434)
.|+|...++..+ .|.. +..+... +... ..+... ..++ .+.++|++..++++ ..++.+
T Consensus 159 ~p~~~~~~~~~~--~dg~---------~~~v~~~~~g~~~~~~~~~~~~~~~-~~~~-~~~~~~~g~~~~~~--~~~~~v 223 (361)
T 2oiz_A 159 QPNRPRSFMTIC--GDGG---------LLTINLGEDGKVASQSRSKQMFSVK-DDPI-FIAPALDKDKAHFV--SYYGNV 223 (361)
T ss_dssp CTTSSSEEEEEE--TTSS---------EEEEEECTTSSEEEEEECCCCSCTT-TSCB-CSCCEECSSEEEEE--BTTSEE
T ss_pred cCCCCeeEEEEC--CCCc---------EEEEEECCCCcEeeeccccceEcCC-CCce-EEEecccCCEEEEE--eCCCeE
Confidence 444432222111 1111 1111111 1100 001111 1222 33446788777754 346789
Q ss_pred EEEecccceeE---Ee--CC----------cCeeEEEECCCCCeEEEEec-CC-------CCCeEEEEEccCCEEEEEee
Q 013871 222 TIFNKKCRPIL---EL--GS----------GPYNTVRWNPKGKFLCLAGF-GN-------LPGDMAFWDYVDGKQLGTTR 278 (434)
Q Consensus 222 ~l~d~~~~~~~---~~--~~----------~~~~~i~~SP~g~~l~~~~~-~~-------~~g~i~iwd~~~~~~i~~~~ 278 (434)
.++|+....+. .+ .. .....++|+|+|+.++++.. +. ..+.|.+||+.+++.+..+.
T Consensus 224 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~ 303 (361)
T 2oiz_A 224 YSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIP 303 (361)
T ss_dssp EEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEE
T ss_pred EEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEe
Confidence 99998533211 11 00 11223799999988777642 10 13489999999999999887
Q ss_pred CCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEee-cC--ceeeee-ec-ccceeeEEEcCCC
Q 013871 279 AECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NG--SLFFKK-MF-DKLFQAEWKPVSP 337 (434)
Q Consensus 279 ~~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~-~g--~~~~~~-~~-~~~~~~~w~p~~~ 337 (434)
.+.+..++|+|||++|+++. ++.|.|||. +| +++... .. ..-..+.+.|++.
T Consensus 304 ~~~p~~ia~spdg~~l~v~n-------~~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 304 GRDALSMTIDQQRNLMLTLD-------GGNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp CTTCCEEEEETTTTEEEEEC-------SSCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred cCCeeEEEECCCCCEEEEeC-------CCeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 66666799999999887654 489999998 45 555553 22 2346777887753
No 173
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.61 E-value=7.5e-13 Score=127.40 Aligned_cols=264 Identities=12% Similarity=0.088 Sum_probs=155.7
Q ss_pred eEEecCCCcEEEEEecC-----CCCCCCcEEEEEcCCCcEEEEEeecCc---CCCCCCeeeecCCCcEEEEec---CCeE
Q 013871 4 LLTCLRVGLIIQTFQKS-----STPQEKNVILWKTETGEAVYQLFQKNM---TKTTWPSIRFSSDEAVACRMA---TNEI 72 (434)
Q Consensus 4 ~l~fSP~g~~L~t~~~~-----~~~~d~~v~iWd~~~g~~~~~~~~~~~---~~~~~~~~~~S~d~~~la~~~---~~~i 72 (434)
.++|||||++|.+.... .+..++.|.+||+.+++.+.++..... .......+++||||++|+.+. ++.|
T Consensus 54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v 133 (361)
T 2oiz_A 54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSI 133 (361)
T ss_dssp EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEE
T ss_pred ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeE
Confidence 58999999999987631 112356799999999999888764310 012233789999999998763 4799
Q ss_pred EEEeCCCCCCceeee-eecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeee---eccc--ceeE
Q 013871 73 QFFDTTDFPKGILYR-LRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRS---FFRC--STVQ 146 (434)
Q Consensus 73 ~v~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~---~~~~--~~~~ 146 (434)
.+||+.... .... +...+...+.+.|++...++...+ ++.+.++.+... ++...... .+.. ....
T Consensus 134 ~v~d~~~~~--~~~~~i~~~~~~~v~~~p~~~~~~~~~~~-----dg~~~~v~~~~~--g~~~~~~~~~~~~~~~~~~~~ 204 (361)
T 2oiz_A 134 GIVDVAKGD--YVEDVTAAAGCWSVIPQPNRPRSFMTICG-----DGGLLTINLGED--GKVASQSRSKQMFSVKDDPIF 204 (361)
T ss_dssp EEEETTTTE--EEEEEGGGTTEEEEEECTTSSSEEEEEET-----TSSEEEEEECTT--SSEEEEEECCCCSCTTTSCBC
T ss_pred EEEECCCCc--EEEEEecCCCcceeEEcCCCCeeEEEECC-----CCcEEEEEECCC--CcEeeeccccceEcCCCCceE
Confidence 999998753 2334 444444445566764444333332 234555555431 12111100 0100 0111
Q ss_pred EEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceee---eecCC---------CCCeEEEEECcCCCEEEEEE
Q 013871 147 LNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGL---VPLRK---------EGPVHDVQWSYSGSEFAVVY 214 (434)
Q Consensus 147 ~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~---v~l~~---------~~~i~~v~wspdg~~~av~~ 214 (434)
+..+++|..+++.. .+ + .++.++........ ..+.. ......++++||++++++..
T Consensus 205 ~~~~~~g~~~~~~~---~~-------~--~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~ 272 (361)
T 2oiz_A 205 IAPALDKDKAHFVS---YY-------G--NVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFM 272 (361)
T ss_dssp SCCEECSSEEEEEB---TT-------S--EEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEE
T ss_pred EEecccCCEEEEEe---CC-------C--eEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEE
Confidence 22245555544321 11 1 24444433221111 01100 11222378999999888753
Q ss_pred c-c--------CCCeEEEEecccce-eEEeCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC--EEEEEee--CC
Q 013871 215 G-F--------MPASATIFNKKCRP-ILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG--KQLGTTR--AE 280 (434)
Q Consensus 215 g-~--------~~~~v~l~d~~~~~-~~~~~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~--~~i~~~~--~~ 280 (434)
. . ....|.+||++... +..+..+....|+|+|||++|++++. +.|.+||..++ +.+..+. +.
T Consensus 273 ~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~p~~ia~spdg~~l~v~n~----~~v~v~D~~t~~l~~~~~i~~~G~ 348 (361)
T 2oiz_A 273 HPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRDALSMTIDQQRNLMLTLDG----GNVNVYDISQPEPKLLRTIEGAAE 348 (361)
T ss_dssp ESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTTCCEEEEETTTTEEEEECS----SCEEEEECSSSSCEEEEEETTSCS
T ss_pred ccCCCcccccCCCceEEEEECCCCcEEEEEecCCeeEEEECCCCCEEEEeCC----CeEEEEECCCCcceeeEEeccCCC
Confidence 2 1 13489999997544 44442111899999999999888762 69999999999 9998863 34
Q ss_pred CceEEEECCCCC
Q 013871 281 CSVTSEWSPDGR 292 (434)
Q Consensus 281 ~~~~~~wspdg~ 292 (434)
.+..+.++|||+
T Consensus 349 ~P~~~~~~p~G~ 360 (361)
T 2oiz_A 349 ASLQVQFHPVGG 360 (361)
T ss_dssp SEEEEEECCCSC
T ss_pred CcEEEEecCCCC
Confidence 667799999986
No 174
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.58 E-value=1.2e-13 Score=136.48 Aligned_cols=162 Identities=14% Similarity=0.116 Sum_probs=107.7
Q ss_pred cceeEEEECCCCCeEEEEE-EecccccCceeecceeEEEEeeC--Cc-ce------eeeecCCCCCeEEEEECcC-CCEE
Q 013871 142 CSTVQLNWNRGSTGLLAVA-QSDVDKTNQSYYGESKLNYLTTD--GT-HE------GLVPLRKEGPVHDVQWSYS-GSEF 210 (434)
Q Consensus 142 ~~~~~~~ws~~G~~l~~~~-~~~~d~~~~~~~g~~~l~~l~~~--~~-~~------~~v~l~~~~~i~~v~wspd-g~~~ 210 (434)
..+..+.|+|+|+.|++.. +...|.+.+. |.+... +. .. ......+...|.+++|+|+ +..|
T Consensus 93 ~~v~~l~~spdg~~lav~~~sgs~d~~v~i-------wd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~l 165 (434)
T 2oit_A 93 FPIHHLALSCDNLTLSACMMSSEYGSIIAF-------FDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMV 165 (434)
T ss_dssp SCEEEEEECTTSCEEEEEEEETTTEEEEEE-------EEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEE
T ss_pred CcccEEEEcCCCCEEEEEEeccCCCceEEE-------EEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEE
Confidence 4567899999999887643 2333444433 322111 00 00 0111124678999999998 6777
Q ss_pred EEEEccCCCeEEEEecccce-eEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC-------
Q 013871 211 AVVYGFMPASATIFNKKCRP-ILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE------- 280 (434)
Q Consensus 211 av~~g~~~~~v~l~d~~~~~-~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~------- 280 (434)
+ ++..|+.|++||++... +... |...+++++|||+|++|++|+ .+|.|.+||.+ ++....+..+
T Consensus 166 a--s~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs---~dg~v~iwd~~-~~~~~~~~~~~~~~~~~ 239 (434)
T 2oit_A 166 A--VCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGK---QNGTVVQYLPT-LQEKKVIPCPPFYESDH 239 (434)
T ss_dssp E--EEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEE---TTSCEEEECTT-CCEEEEECCCTTCCTTS
T ss_pred E--EEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEc---CCCcEEEEccC-CcccccccCCcccCCCC
Confidence 7 57779999999997543 2222 577899999999999999999 56799999998 4444443322
Q ss_pred --CceEEEECCCCCEEEEEEcC-CceeeCCcEEEEeecC
Q 013871 281 --CSVTSEWSPDGRYFMTATTA-PRLQIDNGIKIFHHNG 316 (434)
Q Consensus 281 --~~~~~~wspdg~~l~tas~~-prl~~D~~i~iw~~~g 316 (434)
.+..++|++++.++++.+.. -+......+++|++..
T Consensus 240 ~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~ 278 (434)
T 2oit_A 240 PVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPK 278 (434)
T ss_dssp CEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCC
T ss_pred ceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEecc
Confidence 45569999999988776542 1111123499999854
No 175
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.57 E-value=1.9e-11 Score=124.16 Aligned_cols=290 Identities=13% Similarity=0.065 Sum_probs=178.9
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcC--CCcEEEEEeecCcCCCCCCeeeec----CCCcEEEEe--cCCeEE
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTE--TGEAVYQLFQKNMTKTTWPSIRFS----SDEAVACRM--ATNEIQ 73 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~--~g~~~~~~~~~~~~~~~~~~~~~S----~d~~~la~~--~~~~i~ 73 (434)
+..+.|||||+||.+.+ .|+.|.+||+. +++.+.++.... .-..+.|| |||++++.+ .+++|.
T Consensus 199 p~~v~~SpDGr~lyv~~-----~dg~V~viD~~~~t~~~v~~i~~G~----~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ 269 (567)
T 1qks_A 199 VHISRLSASGRYLFVIG-----RDGKVNMIDLWMKEPTTVAEIKIGS----EARSIETSKMEGWEDKYAIAGAYWPPQYV 269 (567)
T ss_dssp EEEEEECTTSCEEEEEE-----TTSEEEEEETTSSSCCEEEEEECCS----EEEEEEECCSTTCTTTEEEEEEEETTEEE
T ss_pred ccceEECCCCCEEEEEc-----CCCeEEEEECCCCCCcEeEEEecCC----CCceeEEccccCCCCCEEEEEEccCCeEE
Confidence 35789999999999887 67899999995 888888876542 22378999 699988876 458999
Q ss_pred EEeCCCCCCceeeeee-----------cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeee-cc
Q 013871 74 FFDTTDFPKGILYRLR-----------VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSF-FR 141 (434)
Q Consensus 74 v~~~~~~~~~~~~~~~-----------~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~-~~ 141 (434)
|+|..++......... ...+..+..|++ ++.+.+... ..+.|.++++.. ...+..... ..
T Consensus 270 ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~-~~~~vv~~~----~~g~v~~vd~~~---~~~~~v~~i~~~ 341 (567)
T 1qks_A 270 IMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHY-RPEFIVNVK----ETGKILLVDYTD---LNNLKTTEISAE 341 (567)
T ss_dssp EEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSS-SSEEEEEET----TTTEEEEEETTC---SSEEEEEEEECC
T ss_pred EEECCCCcEEEEEeccccccccccccCCCceEEEEEcCC-CCEEEEEec----CCCeEEEEecCC---Cccceeeeeecc
Confidence 9998776543222211 115667777877 343333332 336788888765 221211111 11
Q ss_pred cceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcc-eeeeec-C---CCCCeEEEEECcCCCEEEEEEcc
Q 013871 142 CSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH-EGLVPL-R---KEGPVHDVQWSYSGSEFAVVYGF 216 (434)
Q Consensus 142 ~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~-~~~v~l-~---~~~~i~~v~wspdg~~~av~~g~ 216 (434)
.....+.|+|+|+++++.... ...+..+++.... ...+++ . +.+.--.+ ++|++..+.+....
T Consensus 342 ~~~~d~~~~pdgr~~~va~~~-----------sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~ 409 (567)
T 1qks_A 342 RFLHDGGLDGSHRYFITAANA-----------RNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHM 409 (567)
T ss_dssp SSEEEEEECTTSCEEEEEEGG-----------GTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBS
T ss_pred ccccCceECCCCCEEEEEeCC-----------CCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCC
Confidence 123367899999998775321 1235555554432 223344 2 12211122 57886666553333
Q ss_pred CCCeEEEEeccc--------ceeEEeC--CcCeeEEEECCCCCeEEEEecCCC----CCeEEEEEccCC---------EE
Q 013871 217 MPASATIFNKKC--------RPILELG--SGPYNTVRWNPKGKFLCLAGFGNL----PGDMAFWDYVDG---------KQ 273 (434)
Q Consensus 217 ~~~~v~l~d~~~--------~~~~~~~--~~~~~~i~~SP~g~~l~~~~~~~~----~g~i~iwd~~~~---------~~ 273 (434)
.++.|.++|... +.+..+. ...-..|..+|+|++|.+....+- ...|.++|+.+. +.
T Consensus 410 g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~ 489 (567)
T 1qks_A 410 GDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKT 489 (567)
T ss_dssp SSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEE
T ss_pred CCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEE
Confidence 457999999864 3445543 222245889999999988764221 358999999877 22
Q ss_pred EEEe-------eCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec-Cceeee
Q 013871 274 LGTT-------RAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLFFK 321 (434)
Q Consensus 274 i~~~-------~~~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~-g~~~~~ 321 (434)
+... .+..+.+++|+|||+++.++.-. +..-++.|.|+|.. ++++..
T Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~-~~~~~~~i~v~D~~t~~~~~~ 544 (567)
T 1qks_A 490 LPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWN-GKDQESALVVVDDKTLELKHV 544 (567)
T ss_dssp ECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEEC-CTTSCCEEEEEETTTTEEEEE
T ss_pred eccccccccCCCCcceEeeeECCCCCEEEEEeec-CCCCCCcEEEEECCCceEEEE
Confidence 2211 12366789999999999887421 00016899999874 444433
No 176
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.57 E-value=6.4e-13 Score=126.40 Aligned_cols=236 Identities=12% Similarity=0.017 Sum_probs=136.3
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-C-----------
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-T----------- 69 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~----------- 69 (434)
+..+.|||||++|++.+...+.....|.+||+.+|+........ . +..+.|||||+.|++.. +
T Consensus 61 ~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~----~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~ 135 (347)
T 2gop_A 61 ATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK----N-IRSLEWNEDSRKLLIVGFKRREDEDFIFED 135 (347)
T ss_dssp CEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES----E-EEEEEECTTSSEEEEEEECCCC--------
T ss_pred CCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC----C-ccceeECCCCCEEEEEEccCCCcCCcEEEc
Confidence 46789999999999877332112345888999888765443332 2 55899999999888874 1
Q ss_pred ----------------CeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCC--c-eEEEEEcCCCCC
Q 013871 70 ----------------NEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSP--A-SVQIYACGKDLQ 130 (434)
Q Consensus 70 ----------------~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~--~-~v~i~~~~~~~~ 130 (434)
..|.+|++........... +.+..+.|+|++ +++........+ . ...||.+..
T Consensus 136 ~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~--~~~~~~~~spdg---~~~~~~~~~~~~~~~~~~~l~~~d~--- 207 (347)
T 2gop_A 136 DVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK--PRFSSGIWHRDK---IVVNVPHREIIPQYFKFWDIYIWED--- 207 (347)
T ss_dssp -CCCC---------CEEEEEEEETTTTEEEEEEEE--ETTCEEEEETTE---EEEEEECCCSSCCSSCCEEEEEEET---
T ss_pred ccceeecCcccccCccceEEEEECCCCeEEeeecC--CCcccccCCCCe---EEEEEecccccccccccccEEEeCC---
Confidence 4788899876432112222 278899999985 333222211111 1 334554433
Q ss_pred CCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEE-EEECcCCCE
Q 013871 131 SQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHD-VQWSYSGSE 209 (434)
Q Consensus 131 ~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~-v~wspdg~~ 209 (434)
+.. ..+... ... ..++|+|+.|++......+. ......|+.++ .+. ...+.......+.. +.|+ || .
T Consensus 208 ~~~-~~l~~~-~~~--~~~spdg~~l~~~~~~~~~~----~~~~~~l~~~d-~~~-~~~l~~~~~~~~~~~~~~s-dg-~ 275 (347)
T 2gop_A 208 GKE-EKMFEK-VSF--YAVDSDGERILLYGKPEKKY----MSEHNKLYIYD-GKE-VMGILDEVDRGVGQAKIKD-GK-V 275 (347)
T ss_dssp TEE-EEEEEE-ESE--EEEEECSSCEEEEECCSSSC----CCSSCEEEEEC-SSC-EEESSTTCCSEEEEEEEET-TE-E
T ss_pred Cce-EEeccC-cce--eeECCCCCEEEEEEccccCC----ccccceEEEEC-CCc-eEeccccCCcccCCccEEc-Cc-E
Confidence 332 222222 232 23499999987764322110 01123577777 332 22222233567776 9999 87 4
Q ss_pred EEEEEccCCCeEEEEecc-cceeEEe-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEE
Q 013871 210 FAVVYGFMPASATIFNKK-CRPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWD 267 (434)
Q Consensus 210 ~av~~g~~~~~v~l~d~~-~~~~~~~-~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd 267 (434)
++ .+..++.+.|| +. +.....+ +.+.+.++.|+| +++++++.+.....|+.+|
T Consensus 276 ~~--~~~~~~~~~l~-~~~g~~~~~~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 276 YF--TLFEEGSVNLY-IWDGEIKPIAKGRHWIMGFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp EE--EEEETTEEEEE-EESSSEEEEECSSSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred EE--EEecCCcEEEE-EcCCceEEEecCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence 44 35567788888 64 3322222 466788999999 6666665443333455555
No 177
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.56 E-value=3.6e-12 Score=120.60 Aligned_cols=270 Identities=8% Similarity=-0.015 Sum_probs=165.4
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCC
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDF 80 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~ 80 (434)
|.+|.|+|++..++... .++.+++| .++....+.... .....++|++|++++++. .++.|.+|+....
T Consensus 8 ~~~~~~~~~~~~~~~~~-----~~~~~~~~---~~~~~~~~~~~~---~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~ 76 (333)
T 2dg1_A 8 LPTLFYSGKSNSAVPII-----SESELQTI---TAEPWLEISKKG---LQLEGLNFDRQGQLFLLDVFEGNIFKINPETK 76 (333)
T ss_dssp CCBCCSCGGGGCSSCCC-----CGGGSCEE---ECEEEEEEESSC---CCEEEEEECTTSCEEEEETTTCEEEEECTTTC
T ss_pred cceeeecCCccceeEEe-----ecccCccc---ccceeEEEeccC---ccccCcEECCCCCEEEEECCCCEEEEEeCCCC
Confidence 67899999998887664 57888899 355555554432 233488999999977766 4579999998764
Q ss_pred CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeee--ecccceeEEEECCCCCeEEE
Q 013871 81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRS--FFRCSTVQLNWNRGSTGLLA 158 (434)
Q Consensus 81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~--~~~~~~~~~~ws~~G~~l~~ 158 (434)
............+..+.++|++ .+++.- .........|.+|+... ........ ........+.++|+|..+ +
T Consensus 77 ~~~~~~~~~~~~~~~i~~~~dg-~l~v~~-~~~~~~~~~i~~~d~~~---~~~~~~~~~~~~~~~~~~i~~d~~g~l~-v 150 (333)
T 2dg1_A 77 EIKRPFVSHKANPAAIKIHKDG-RLFVCY-LGDFKSTGGIFAATENG---DNLQDIIEDLSTAYCIDDMVFDSKGGFY-F 150 (333)
T ss_dssp CEEEEEECSSSSEEEEEECTTS-CEEEEE-CTTSSSCCEEEEECTTS---CSCEEEECSSSSCCCEEEEEECTTSCEE-E
T ss_pred cEEEEeeCCCCCcceEEECCCC-cEEEEe-CCCCCCCceEEEEeCCC---CEEEEEEccCccCCcccceEECCCCCEE-E
Confidence 3211111223568999999985 333221 11111224678888765 22221111 122346678999999743 3
Q ss_pred EEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc--cceeE----
Q 013871 159 VAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK--CRPIL---- 232 (434)
Q Consensus 159 ~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~--~~~~~---- 232 (434)
...... . ..+...|+.++..+.....+. .....+..++|+|+|+.+++. ....+.|.+||.+ +..+.
T Consensus 151 ~~~~~~--~---~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~i~~~~dg~~l~v~-~~~~~~i~~~d~~~~g~~~~~~~~ 223 (333)
T 2dg1_A 151 TDFRGY--S---TNPLGGVYYVSPDFRTVTPII-QNISVANGIALSTDEKVLWVT-ETTANRLHRIALEDDGVTIQPFGA 223 (333)
T ss_dssp EECCCB--T---TBCCEEEEEECTTSCCEEEEE-EEESSEEEEEECTTSSEEEEE-EGGGTEEEEEEECTTSSSEEEEEE
T ss_pred Eecccc--c---cCCCceEEEEeCCCCEEEEee-cCCCcccceEECCCCCEEEEE-eCCCCeEEEEEecCCCcCcccccc
Confidence 221100 0 001234777765543222221 112457899999999987764 4456799999984 22221
Q ss_pred ----EeC-CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--------CceEEEECCCCCEEEEEEc
Q 013871 233 ----ELG-SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--------CSVTSEWSPDGRYFMTATT 299 (434)
Q Consensus 233 ----~~~-~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--------~~~~~~wspdg~~l~tas~ 299 (434)
.+. ......++++++|++++... .++.|.+||. +++.+..+..+ .+..++|+|||+.|+.++.
T Consensus 224 ~~~~~~~~~~~~~~i~~d~~G~l~v~~~---~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~ 299 (333)
T 2dg1_A 224 TIPYYFTGHEGPDSCCIDSDDNLYVAMY---GQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSN 299 (333)
T ss_dssp EEEEECCSSSEEEEEEEBTTCCEEEEEE---TTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred eEEEecCCCCCCCceEECCCCCEEEEEc---CCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeC
Confidence 111 13567799999999776654 2368999998 45566655543 3567999999988877766
No 178
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.56 E-value=1.4e-12 Score=136.62 Aligned_cols=287 Identities=10% Similarity=-0.045 Sum_probs=166.1
Q ss_pred ecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecC---cCCCCCCeeeecCCCcEEEEecC------CeEEEEeC
Q 013871 7 CLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKN---MTKTTWPSIRFSSDEAVACRMAT------NEIQFFDT 77 (434)
Q Consensus 7 fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~---~~~~~~~~~~~S~d~~~la~~~~------~~i~v~~~ 77 (434)
.+|+|++++......+.....|.+.+...++...-+.... .+...+..++|||||++||...+ .+|++||+
T Consensus 75 p~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl 154 (695)
T 2bkl_A 75 PSRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDV 154 (695)
T ss_dssp CEEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEET
T ss_pred CEEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEEC
Confidence 5699999997764332222445555655554322222111 01123557899999999997621 48999999
Q ss_pred CCCCCceeeeeecCCe--eEEEEeCCCCCeEEEEecCCC--------CCCceEEEEEcCCCCCCCc----eeeeeecccc
Q 013871 78 TDFPKGILYRLRVPGV--AAFEVSKAPGSHVAVFVPESK--------GSPASVQIYACGKDLQSQP----LARRSFFRCS 143 (434)
Q Consensus 78 ~~~~~~~~~~~~~~~v--~~~~~sp~~~~~ia~~~~~~~--------~~~~~v~i~~~~~~~~~~~----i~~~~~~~~~ 143 (434)
.+..... ..+...+ ..++|||+ +..+++...... ..+..|.+|++.+ ++. +.....+...
T Consensus 155 ~tg~~~~--~~~~~~~~~~~~~wspD-g~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t---~~~~~~lv~~~~~~~~~ 228 (695)
T 2bkl_A 155 DSGEWSK--VDVIEGGKYATPKWTPD-SKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGT---EPSKDTVVHERTGDPTT 228 (695)
T ss_dssp TTCCBCS--SCCBSCCTTCCCEECTT-SSEEEEEECCCCTTSCGGGGGGGCEEEEEETTS---CGGGCEEEECCCCCTTC
T ss_pred CCCCCcC--CcccCcccccceEEecC-CCEEEEEEecCCCCCccccCCCCCEEEEEECCC---CchhceEEEecCCCCEE
Confidence 8754310 1133333 68999999 455544433221 2345799999876 331 2121122245
Q ss_pred eeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEcc--CCCeE
Q 013871 144 TVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGF--MPASA 221 (434)
Q Consensus 144 ~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~--~~~~v 221 (434)
...+.|+|||++|++...... +...||+++..+.....+.. ....+....| |+|. |++.+.. .+.+|
T Consensus 229 ~~~~~~SpDG~~l~~~~~~~~--------~~~~l~~~~~~~~~~~~l~~-~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l 297 (695)
T 2bkl_A 229 FLQSDLSRDGKYLFVYILRGW--------SENDVYWKRPGEKDFRLLVK-GVGAKYEVHA-WKDR-FYVLTDEGAPRQRV 297 (695)
T ss_dssp EEEEEECTTSCCEEEEEEETT--------TEEEEEEECTTCSSCEEEEE-CSSCCEEEEE-ETTE-EEEEECTTCTTCEE
T ss_pred EEEEEECCCCCEEEEEEeCCC--------CceEEEEEcCCCCceEEeec-CCCceEEEEe-cCCc-EEEEECCCCCCCEE
Confidence 678899999999877543211 23457777654432233332 2345566667 7787 7665432 24689
Q ss_pred EEEecccce---eEEe--C--CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEcc-CCEEEEEeeCC---CceEEEECCC
Q 013871 222 TIFNKKCRP---ILEL--G--SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV-DGKQLGTTRAE---CSVTSEWSPD 290 (434)
Q Consensus 222 ~l~d~~~~~---~~~~--~--~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~-~~~~i~~~~~~---~~~~~~wspd 290 (434)
.+||+.... ...+ + ...+..+.|+ +++++++.. .+|..+||.++ +++.+..+..+ .+..++++||
T Consensus 298 ~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~---~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d 373 (695)
T 2bkl_A 298 FEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYL---KDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLED 373 (695)
T ss_dssp EEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEE---ETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTT
T ss_pred EEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEE---ECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCC
Confidence 999986432 1222 2 3446778888 566666655 33566666443 35455544433 2334889999
Q ss_pred CCEEEEEEcCCceeeCCcEEEEeecC
Q 013871 291 GRYFMTATTAPRLQIDNGIKIFHHNG 316 (434)
Q Consensus 291 g~~l~tas~~prl~~D~~i~iw~~~g 316 (434)
|..|+...+++. .++.|++||+.+
T Consensus 374 ~~~l~~~~ss~~--~P~~v~~~d~~~ 397 (695)
T 2bkl_A 374 LDDAYYVFTSFT--TPRQIYKTSVST 397 (695)
T ss_dssp CSEEEEEEEETT--EEEEEEEEETTT
T ss_pred CCEEEEEEcCCC--CCCEEEEEECCC
Confidence 987775544221 157899999854
No 179
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.53 E-value=1.7e-11 Score=124.60 Aligned_cols=301 Identities=13% Similarity=0.062 Sum_probs=188.0
Q ss_pred CCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCC--CCCCcee
Q 013871 9 RVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTT--DFPKGIL 85 (434)
Q Consensus 9 P~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~--~~~~~~~ 85 (434)
|.+.++++.. .++.|.++|..+++.+.++... .....+.|||||++++.+. ++.|.+||+. +.. ..
T Consensus 165 ~~~~~~V~~~-----~~~~V~viD~~t~~v~~~i~~g----~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~--~v 233 (567)
T 1qks_A 165 LENLFSVTLR-----DAGQIALIDGSTYEIKTVLDTG----YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPT--TV 233 (567)
T ss_dssp GGGEEEEEET-----TTTEEEEEETTTCCEEEEEECS----SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCC--EE
T ss_pred CCceEEEEeC-----CCCeEEEEECCCCeEEEEEeCC----CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCc--Ee
Confidence 4344455444 6789999999999999888654 2333789999999888764 5799999985 432 33
Q ss_pred eeeec-CCeeEEEEe----CCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecc----------c-ceeEEEE
Q 013871 86 YRLRV-PGVAAFEVS----KAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFR----------C-STVQLNW 149 (434)
Q Consensus 86 ~~~~~-~~v~~~~~s----p~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~----------~-~~~~~~w 149 (434)
.++.. .....+++| |++ .++.+.. ..++.|.+++..+ .+++....... . ....+..
T Consensus 234 ~~i~~G~~P~~ia~s~~~~pDG-k~l~v~n----~~~~~v~ViD~~t---~~~~~~i~~~~~~~~~~~~~p~~rva~i~~ 305 (567)
T 1qks_A 234 AEIKIGSEARSIETSKMEGWED-KYAIAGA----YWPPQYVIMDGET---LEPKKIQSTRGMTYDEQEYHPEPRVAAILA 305 (567)
T ss_dssp EEEECCSEEEEEEECCSTTCTT-TEEEEEE----EETTEEEEEETTT---CCEEEEEECCEECTTTCCEESCCCEEEEEE
T ss_pred EEEecCCCCceeEEccccCCCC-CEEEEEE----ccCCeEEEEECCC---CcEEEEEeccccccccccccCCCceEEEEE
Confidence 44443 346789999 574 4443321 2346889999877 55555444221 1 2345666
Q ss_pred CCCCCeEEEEEEecccccCceeecceeEEEEeeCCcc-eeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc
Q 013871 150 NRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH-EGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC 228 (434)
Q Consensus 150 s~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~-~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~ 228 (434)
++++..+++.. ..++ .++.++..... .....+......+++.|+|||++|++.. ...++|.++|++.
T Consensus 306 s~~~~~~vv~~----~~~g-------~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~-~~sn~V~ViD~~t 373 (567)
T 1qks_A 306 SHYRPEFIVNV----KETG-------KILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAA-NARNKLVVIDTKE 373 (567)
T ss_dssp CSSSSEEEEEE----TTTT-------EEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEE-GGGTEEEEEETTT
T ss_pred cCCCCEEEEEe----cCCC-------eEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEe-CCCCeEEEEECCC
Confidence 77766544321 1122 24455433221 1111223345678999999999998854 4467999999976
Q ss_pred ceeE-EeCC---cCe--eEE-EECCCCC-eEEEEecCCCCCeEEEEEccC-------CEEEEEeeCC--CceEEEECCCC
Q 013871 229 RPIL-ELGS---GPY--NTV-RWNPKGK-FLCLAGFGNLPGDMAFWDYVD-------GKQLGTTRAE--CSVTSEWSPDG 291 (434)
Q Consensus 229 ~~~~-~~~~---~~~--~~i-~~SP~g~-~l~~~~~~~~~g~i~iwd~~~-------~~~i~~~~~~--~~~~~~wspdg 291 (434)
..+. .+.. .+. ..+ .++|++. ..+++..+ +++|.++|..+ .+.+.++... ....+..+|||
T Consensus 374 ~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g--~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~ 451 (567)
T 1qks_A 374 GKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMG--DDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNS 451 (567)
T ss_dssp TEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSS--SSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTC
T ss_pred CcEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCC--CCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCC
Confidence 5433 2222 121 122 3689855 44444433 36999999987 6777777654 33458899999
Q ss_pred CEEEEEEc-CCceeeCCcEEEEeecCc-----e-e-eeee----------cccceeeEEEcCCCCCCCC
Q 013871 292 RYFMTATT-APRLQIDNGIKIFHHNGS-----L-F-FKKM----------FDKLFQAEWKPVSPDKFGD 342 (434)
Q Consensus 292 ~~l~tas~-~prl~~D~~i~iw~~~g~-----~-~-~~~~----------~~~~~~~~w~p~~~~~~~~ 342 (434)
+++.+... .|...+.++|.|+|.... . . .... -..+.++.|.|++..++-.
T Consensus 452 ~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s 520 (567)
T 1qks_A 452 QYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFS 520 (567)
T ss_dssp SEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEE
T ss_pred CeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEE
Confidence 99998763 443334679999998543 1 1 1121 1357888899988876653
No 180
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.53 E-value=6.7e-12 Score=119.02 Aligned_cols=254 Identities=9% Similarity=0.052 Sum_probs=154.5
Q ss_pred cceEEecCCCcEEEEEecCCC-------------------CCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCc
Q 013871 2 LLLLTCLRVGLIIQTFQKSST-------------------PQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEA 62 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~-------------------~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~ 62 (434)
|.+|+|+|+|+++++...... ..+++|.+||..+|+.+..+..... .....+++++||+
T Consensus 26 v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~--~~p~gia~d~~g~ 103 (329)
T 3fvz_A 26 VSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLF--YLPHGLSIDTDGN 103 (329)
T ss_dssp EEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTC--SSEEEEEECTTSC
T ss_pred ceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCcc--CCceEEEECCCCC
Confidence 678999999999987652100 0124799999999998776543211 2333789999999
Q ss_pred EEEEec-CCeEEEEeCCCCCCceeeee-----------ecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCC
Q 013871 63 VACRMA-TNEIQFFDTTDFPKGILYRL-----------RVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQ 130 (434)
Q Consensus 63 ~la~~~-~~~i~v~~~~~~~~~~~~~~-----------~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~ 130 (434)
++++.. ++.|++|+...... ....+ +......++++|+.+.++.. +. .....|++|
T Consensus 104 l~v~d~~~~~v~~~~~~g~~~-~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~---d~-~~~~~I~~~------- 171 (329)
T 3fvz_A 104 YWVTDVALHQVFKLDPHSKEG-PLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVS---DG-YCNSRIVQF------- 171 (329)
T ss_dssp EEEEETTTTEEEEECTTCSSC-CSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEE---EC-SSCCEEEEE-------
T ss_pred EEEEECCCCEEEEEeCCCCeE-EEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEE---eC-CCCCeEEEE-------
Confidence 777764 57999999754311 11111 12246677777732222211 10 011233333
Q ss_pred CCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEE
Q 013871 131 SQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEF 210 (434)
Q Consensus 131 ~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~ 210 (434)
+++|..+..+... +..... ....-...+.++++|++..+
T Consensus 172 -------------------~~~g~~~~~~~~~---------------------g~~~~~-~~~~~~~p~gia~d~~~g~l 210 (329)
T 3fvz_A 172 -------------------SPSGKFVTQWGEE---------------------SSGSSP-RPGQFSVPHSLALVPHLDQL 210 (329)
T ss_dssp -------------------CTTSCEEEEECEE---------------------CCSSSC-CTTEESCEEEEEEETTTTEE
T ss_pred -------------------cCCCCEEEEeccC---------------------CCCCCC-CCcccCCCcEEEEECCCCEE
Confidence 3334432221100 000000 00001246889999995566
Q ss_pred EEEEccCCCeEEEEecc-cceeEEe----CCcCeeEEEECCCCCeEEEEec----CCCCCeEEEEEccCCEEEEEee---
Q 013871 211 AVVYGFMPASATIFNKK-CRPILEL----GSGPYNTVRWNPKGKFLCLAGF----GNLPGDMAFWDYVDGKQLGTTR--- 278 (434)
Q Consensus 211 av~~g~~~~~v~l~d~~-~~~~~~~----~~~~~~~i~~SP~g~~l~~~~~----~~~~g~i~iwd~~~~~~i~~~~--- 278 (434)
.+ +...++.|.+||.. +..+..+ .......++|+| |..++..+. +.....|.+||..+++.+..+.
T Consensus 211 ~v-~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~ 288 (329)
T 3fvz_A 211 CV-ADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVR 288 (329)
T ss_dssp EE-EETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSS
T ss_pred EE-EECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCC
Confidence 55 46667899999997 7766666 234567899999 544444331 1124589999999999888873
Q ss_pred CC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCce
Q 013871 279 AE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL 318 (434)
Q Consensus 279 ~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~ 318 (434)
.+ .+..++++|||..+++... ++.|++|+.+|..
T Consensus 289 ~~~~~p~~ia~~~dG~lyvad~~------~~~I~~~~~~~~~ 324 (329)
T 3fvz_A 289 KHFDMPHDIVASEDGTVYIGDAH------TNTVWKFTLTEKM 324 (329)
T ss_dssp SCCSSEEEEEECTTSEEEEEESS------SCCEEEEEEEECS
T ss_pred CccCCeeEEEECCCCCEEEEECC------CCEEEEEeCCccc
Confidence 22 4566999999966666655 8999999998753
No 181
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.53 E-value=1.3e-12 Score=136.92 Aligned_cols=250 Identities=9% Similarity=-0.002 Sum_probs=150.2
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC-Ce---------
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT-NE--------- 71 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~-~~--------- 71 (434)
+.+++|||||++|+......+.++..|+|||+.+|+.+..-.... .....+.|||||+.|++... ..
T Consensus 123 ~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~---~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~ 199 (695)
T 2bkl_A 123 LGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEG---GKYATPKWTPDSKGFYYEWLPTDPSIKVDERP 199 (695)
T ss_dssp EEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSC---CTTCCCEECTTSSEEEEEECCCCTTSCGGGGG
T ss_pred EEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCc---ccccceEEecCCCEEEEEEecCCCCCccccCC
Confidence 467899999999998776556667899999999998641101111 11137899999999888743 33
Q ss_pred ----EEEEeCCCCCCceeeeee----cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccc
Q 013871 72 ----IQFFDTTDFPKGILYRLR----VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCS 143 (434)
Q Consensus 72 ----i~v~~~~~~~~~~~~~~~----~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~ 143 (434)
|.+|++.+.......... ...+..+.|||++ ..|++..... .....|.+++.+. + ....+......
T Consensus 200 ~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG-~~l~~~~~~~-~~~~~l~~~~~~~---~-~~~~l~~~~~~ 273 (695)
T 2bkl_A 200 GYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDG-KYLFVYILRG-WSENDVYWKRPGE---K-DFRLLVKGVGA 273 (695)
T ss_dssp GGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTS-CCEEEEEEET-TTEEEEEEECTTC---S-SCEEEEECSSC
T ss_pred CCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCC-CEEEEEEeCC-CCceEEEEEcCCC---C-ceEEeecCCCc
Confidence 999998764421111111 1357789999995 5554433221 1223555554433 2 33444444444
Q ss_pred eeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcce---eeeecCC-CCCeEEEEECcCCCEEEEEEccCCC
Q 013871 144 TVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHE---GLVPLRK-EGPVHDVQWSYSGSEFAVVYGFMPA 219 (434)
Q Consensus 144 ~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~---~~v~l~~-~~~i~~v~wspdg~~~av~~g~~~~ 219 (434)
.....| ++|. +++.+. .+. +...|+.+++.+... ..+.... ...+.+++|+ + ..+++ +...++
T Consensus 274 ~~~~~~-~~g~-l~~~s~--~~~------~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~-~~lv~-~~~~dg 340 (695)
T 2bkl_A 274 KYEVHA-WKDR-FYVLTD--EGA------PRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-G-GHLSL-EYLKDA 340 (695)
T ss_dssp CEEEEE-ETTE-EEEEEC--TTC------TTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-T-TEEEE-EEEETT
T ss_pred eEEEEe-cCCc-EEEEEC--CCC------CCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-C-CEEEE-EEEECC
Confidence 555666 6777 655432 111 223577777654321 2222222 4467888998 4 44554 345566
Q ss_pred eEEEE--ecccceeEEe--C-CcCeeEEEECCCCCeEEEEe-cCCCCCeEEEEEccCCEE
Q 013871 220 SATIF--NKKCRPILEL--G-SGPYNTVRWNPKGKFLCLAG-FGNLPGDMAFWDYVDGKQ 273 (434)
Q Consensus 220 ~v~l~--d~~~~~~~~~--~-~~~~~~i~~SP~g~~l~~~~-~~~~~g~i~iwd~~~~~~ 273 (434)
..+|| ++.+.....+ + .+.+..+.++|+|+.|++.. ....+++|++||+.+++.
T Consensus 341 ~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 341 TSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp EEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred EEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 55554 6556555544 3 55677889999998666543 223467999999988753
No 182
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.52 E-value=8.6e-12 Score=131.52 Aligned_cols=287 Identities=9% Similarity=-0.019 Sum_probs=160.5
Q ss_pred ecCCCcEEEEEecCCCCCCCcEEEEEcC---CCcEEEEEeecC----cCCCCCCeeeecCCCcEEEEecC------CeEE
Q 013871 7 CLRVGLIIQTFQKSSTPQEKNVILWKTE---TGEAVYQLFQKN----MTKTTWPSIRFSSDEAVACRMAT------NEIQ 73 (434)
Q Consensus 7 fSP~g~~L~t~~~~~~~~d~~v~iWd~~---~g~~~~~~~~~~----~~~~~~~~~~~S~d~~~la~~~~------~~i~ 73 (434)
++|||++++......+.....|.+.+.. .++. ..+...+ .+...+..++|||||++||+..+ .+|+
T Consensus 114 p~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~ 192 (741)
T 1yr2_A 114 PQRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKG-RVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVK 192 (741)
T ss_dssp CEEETTEEEEEEECSSCSSCEEEEEETTSCTTCCC-EEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEE
T ss_pred CEEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCC-EEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEE
Confidence 4699999997764322222344555544 4433 2221110 00013447899999999998743 2699
Q ss_pred EEeCCCCCCceeeeeecCCe--eEEEEeCCCCCeEEEEecCCC---------CCCceEEEEEcCCCCCCCc--eeeeeec
Q 013871 74 FFDTTDFPKGILYRLRVPGV--AAFEVSKAPGSHVAVFVPESK---------GSPASVQIYACGKDLQSQP--LARRSFF 140 (434)
Q Consensus 74 v~~~~~~~~~~~~~~~~~~v--~~~~~sp~~~~~ia~~~~~~~---------~~~~~v~i~~~~~~~~~~~--i~~~~~~ 140 (434)
+||+.+... .......+ ..++|||+ ..+++...... +.+..|.+|++.+ ... .......
T Consensus 193 v~dl~tg~~---~~~~~~~~~~~~~~wspD--~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt---~~~~~~lv~~~~ 264 (741)
T 1yr2_A 193 FVGVADGKP---LADELKWVKFSGLAWLGN--DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGT---PQSADQPVFATP 264 (741)
T ss_dssp EEETTTCCE---EEEEEEEEESCCCEESTT--SEEEEEECCCC--------CCCCCEEEEEETTS---CGGGCEEEECCT
T ss_pred EEECCCCCC---CCccCCCceeccEEEECC--CEEEEEEecCcccccccccCCCCCEEEEEECCC---CchhCEEEeccC
Confidence 999987543 22233333 57899998 44443322211 1255788999865 221 1111111
Q ss_pred --ccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCc--c-eeeeecCCCCCeEEEEECcCCCEEEEEEc
Q 013871 141 --RCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGT--H-EGLVPLRKEGPVHDVQWSYSGSEFAVVYG 215 (434)
Q Consensus 141 --~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~--~-~~~v~l~~~~~i~~v~wspdg~~~av~~g 215 (434)
......+.|+|||++|++......+ +...||++++.+. . ...+... ...+... ++|+|+.|++.+.
T Consensus 265 ~~~~~~~~~~~SpDG~~l~~~~~~~~~-------~~~~l~~~d~~~~~~~~~~~l~~~-~~~~~~~-~~~dg~~l~~~s~ 335 (741)
T 1yr2_A 265 ELPKRGHGASVSSDGRWVVITSSEGTD-------PVNTVHVARVTNGKIGPVTALIPD-LKAQWDF-VDGVGDQLWFVSG 335 (741)
T ss_dssp TCTTCEEEEEECTTSCEEEEEEECTTC-------SCCEEEEEEEETTEECCCEEEECS-SSSCEEE-EEEETTEEEEEEC
T ss_pred CCCeEEEEEEECCCCCEEEEEEEccCC-------CcceEEEEECCCCCCcccEEecCC-CCceEEE-EeccCCEEEEEEC
Confidence 1235788999999998876532211 2335787777654 2 2222222 3334444 3499999998754
Q ss_pred cC--CCeEEEEeccc--ceeEEe---CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEcc-CCEEEEEeeC--C-CceE
Q 013871 216 FM--PASATIFNKKC--RPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV-DGKQLGTTRA--E-CSVT 284 (434)
Q Consensus 216 ~~--~~~v~l~d~~~--~~~~~~---~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~-~~~~i~~~~~--~-~~~~ 284 (434)
.. ..+|.++|+.. .....+ +...+..+.|+ ++.++++.. .+|...||.++ +++.+..+.. . .+..
T Consensus 336 ~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~---~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~ 411 (741)
T 1yr2_A 336 DGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYI---HDAKSQVLAFDLDGKPAGAVSLPGIGSASG 411 (741)
T ss_dssp TTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEE---ETTEEEEEEEETTSCEEEECBCSSSCEEEE
T ss_pred CCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEE---ECCEEEEEEEeCCCCceeeccCCCCeEEEE
Confidence 32 34799999875 233333 23345567776 444555554 23455554433 3445554443 2 3445
Q ss_pred EEECCCCCEEEEEEcCCceeeCCcEEEEeecCc
Q 013871 285 SEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS 317 (434)
Q Consensus 285 ~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~ 317 (434)
+.|+|||..|+...+++. ..+.|++||+.+.
T Consensus 412 ~~~s~d~~~l~~~~ss~~--~P~~i~~~d~~tg 442 (741)
T 1yr2_A 412 LSGRPGDRHAYLSFSSFT--QPATVLALDPATA 442 (741)
T ss_dssp EECCBTCSCEEEEEEETT--EEEEEEEEETTTT
T ss_pred eecCCCCCEEEEEEcCCC--CCCEEEEEECCCC
Confidence 899999987664443211 1578999998553
No 183
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.50 E-value=1.1e-11 Score=130.72 Aligned_cols=253 Identities=11% Similarity=0.058 Sum_probs=152.4
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC-C----------
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT-N---------- 70 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~-~---------- 70 (434)
+..++|||||++|+......+.+...|+|||+.+|+.+...... .....+.|||| +.|++... +
T Consensus 165 ~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~----~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~ 239 (741)
T 1yr2_A 165 LDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKW----VKFSGLAWLGN-DALLYSRFAEPKEGQAFQAL 239 (741)
T ss_dssp EEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEE----EESCCCEESTT-SEEEEEECCCC--------C
T ss_pred EEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCC----ceeccEEEECC-CEEEEEEecCcccccccccC
Confidence 45789999999999877443333367999999999876542221 11226899999 88887642 2
Q ss_pred ----eEEEEeCCCCCCceeeeeec----CCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeeccc
Q 013871 71 ----EIQFFDTTDFPKGILYRLRV----PGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRC 142 (434)
Q Consensus 71 ----~i~v~~~~~~~~~~~~~~~~----~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~ 142 (434)
.|.+|++............. ..+..+.|||+ +..|++...........|.+|++.+.. ......+.....
T Consensus 240 ~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpD-G~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~~~~l~~~~~ 317 (741)
T 1yr2_A 240 NYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSD-GRWVVITSSEGTDPVNTVHVARVTNGK-IGPVTALIPDLK 317 (741)
T ss_dssp CCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTT-SCEEEEEEECTTCSCCEEEEEEEETTE-ECCCEEEECSSS
T ss_pred CCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCC-CCEEEEEEEccCCCcceEEEEECCCCC-CcccEEecCCCC
Confidence 48899986543211111111 13788999999 556665544332235688899886510 021333333333
Q ss_pred ceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCc--ceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCe
Q 013871 143 STVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGT--HEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPAS 220 (434)
Q Consensus 143 ~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~--~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~ 220 (434)
..... |+++|+.|++.+..+ . ....|+.+++.+. .-..+.......+.+++|+ +..+++. ...++.
T Consensus 318 ~~~~~-~~~dg~~l~~~s~~~--~------~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~--~~~lv~~-~~~dg~ 385 (741)
T 1yr2_A 318 AQWDF-VDGVGDQLWFVSGDG--A------PLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA--GNRLFAS-YIHDAK 385 (741)
T ss_dssp SCEEE-EEEETTEEEEEECTT--C------TTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE--BTEEEEE-EEETTE
T ss_pred ceEEE-EeccCCEEEEEECCC--C------CCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE--CCEEEEE-EEECCE
Confidence 33333 458999988764321 1 1224777776552 1122222234456678887 4455553 445665
Q ss_pred --EEEEecccceeEEe---CCcCeeEEEECCCCCeEEEE-ecCCCCCeEEEEEccCCEE
Q 013871 221 --ATIFNKKCRPILEL---GSGPYNTVRWNPKGKFLCLA-GFGNLPGDMAFWDYVDGKQ 273 (434)
Q Consensus 221 --v~l~d~~~~~~~~~---~~~~~~~i~~SP~g~~l~~~-~~~~~~g~i~iwd~~~~~~ 273 (434)
+.++|+.+.....+ +.+.+..+.++|+|+.|++. ......++|++||+.+++.
T Consensus 386 ~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 386 SQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT 444 (741)
T ss_dssp EEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred EEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 45556656655544 25667889999999866543 2223468999999998863
No 184
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.49 E-value=1.6e-12 Score=135.09 Aligned_cols=250 Identities=9% Similarity=-0.021 Sum_probs=143.1
Q ss_pred eEEec--CCCcE-EEEEecCCCCCCCcEEEEEcC--C-CcEEEEEeecCc--CCCCCCeeeecCCCcEEEEecC------
Q 013871 4 LLTCL--RVGLI-IQTFQKSSTPQEKNVILWKTE--T-GEAVYQLFQKNM--TKTTWPSIRFSSDEAVACRMAT------ 69 (434)
Q Consensus 4 ~l~fS--P~g~~-L~t~~~~~~~~d~~v~iWd~~--~-g~~~~~~~~~~~--~~~~~~~~~~S~d~~~la~~~~------ 69 (434)
+..|| |||++ |+..+. .+..|.+|++. + ++ ...+..... +...+..++|||||+.|++...
T Consensus 81 ~~~~~~SPDg~~~la~~~~----~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~ 155 (662)
T 3azo_A 81 PWAGVPRPAGGPLLVFTHF----GDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEG 155 (662)
T ss_dssp CEEEECCSSSSCEEEEEBT----TTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSS
T ss_pred cceeeeecCCCeEEEEEEC----CCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCC
Confidence 34454 99999 776541 24567777765 3 44 344433100 1133447899999999988742
Q ss_pred -----CeEEEEeCCC------CCCceeee-eecCCeeEEEEeCCCCCeEEEEecCCCC---CCceEEEEEcCCCCCC--C
Q 013871 70 -----NEIQFFDTTD------FPKGILYR-LRVPGVAAFEVSKAPGSHVAVFVPESKG---SPASVQIYACGKDLQS--Q 132 (434)
Q Consensus 70 -----~~i~v~~~~~------~~~~~~~~-~~~~~v~~~~~sp~~~~~ia~~~~~~~~---~~~~v~i~~~~~~~~~--~ 132 (434)
.+|.+|++.. ... .... .....+..++|||+ +..|++......+ ....|.+|++... + .
T Consensus 156 ~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpD-G~~la~~~~~~~~~~~~~~~i~~~d~~~~--g~~~ 231 (662)
T 3azo_A 156 PSDVRRFLAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPD-GRQAVWLAWDHPRMPWEGTELKTARVTED--GRFA 231 (662)
T ss_dssp TTCEEEEEEEEETTSTTTTCGGGS-EESSCSCSSEECCCEECTT-SSEEEEEEECTTCCTTTCEEEEEEEECTT--SCEE
T ss_pred CCCceeEEEEEECCCCccccCCce-eEEEecCCCcccCceECCC-CCEEEEEECCCCCCCCCCcEEEEEEECCC--Cccc
Confidence 3899999876 222 2122 22345677899999 5666554433222 1257999998721 3 1
Q ss_pred ceeeeee-cccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCC--------CeEEEEE
Q 013871 133 PLARRSF-FRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEG--------PVHDVQW 203 (434)
Q Consensus 133 ~i~~~~~-~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~--------~i~~v~w 203 (434)
....+.. +......+.|+|||+ +++..+ .+. ...||.++..+.....+.-.... .+..++|
T Consensus 232 ~~~~l~~~~~~~~~~~~~spdg~-l~~~~~--~~~-------~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~ 301 (662)
T 3azo_A 232 DTRTLLGGPEEAIAQAEWAPDGS-LIVATD--RTG-------WWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAP 301 (662)
T ss_dssp EEEEEEEETTBCEEEEEECTTSC-EEEEEC--TTS-------SCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEE
T ss_pred ccEEeCCCCCceEcceEECCCCe-EEEEEC--CCC-------CeEEEEEECCCCceeecccccccccCccccccCceEeE
Confidence 3333333 356778899999999 655432 222 22477777644322222111111 1467899
Q ss_pred CcCCCEEEEEEccCCCeEEEE--ecccceeEEe--CCcCeeEEEECCCCCeEEEE-ecCCCCCeEEEEEccCCEEEEE
Q 013871 204 SYSGSEFAVVYGFMPASATIF--NKKCRPILEL--GSGPYNTVRWNPKGKFLCLA-GFGNLPGDMAFWDYVDGKQLGT 276 (434)
Q Consensus 204 spdg~~~av~~g~~~~~v~l~--d~~~~~~~~~--~~~~~~~i~~SP~g~~l~~~-~~~~~~g~i~iwd~~~~~~i~~ 276 (434)
+|+++.++. +.. +.+.|| |+.+..+..+ +...+..+ |+++|+.+++. +..+....|+++|+.+++....
T Consensus 302 ~~~~~~~~~--~~~-~~~~l~~~d~~~~~~~~l~~~~~~~~~~-~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~l 375 (662)
T 3azo_A 302 LANGLIAVV--HGK-GAAVLGILDPESGELVDAAGPWTEWAAT-LTVSGTRAVGVAASPRTAYEVVELDTVTGRARTI 375 (662)
T ss_dssp CTTSCEEEE--EBS-SSCEEEEEETTTTEEEECCSSCCEEEEE-EEEETTEEEEEEEETTEEEEEEEEETTTCCEEEE
T ss_pred eCCCEEEEE--EEc-CccEEEEEECCCCcEEEecCCCCeEEEE-EecCCCEEEEEEcCCCCCCEEEEEECCCCceEEe
Confidence 999887664 344 666666 7766666665 34445544 26667654443 2222335677788877765443
No 185
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.49 E-value=2.8e-11 Score=111.89 Aligned_cols=231 Identities=12% Similarity=0.131 Sum_probs=141.9
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecC---cCCCCCCeeee-cCCCcEEEEec--CCeEEEE
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKN---MTKTTWPSIRF-SSDEAVACRMA--TNEIQFF 75 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~---~~~~~~~~~~~-S~d~~~la~~~--~~~i~v~ 75 (434)
+.+|+++|+|+++++-. .++.|.+||.. ++.+..+.... .+......+++ .+++.++++.. ++.|.+|
T Consensus 32 p~~v~~~~~g~l~v~~~-----~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~ 105 (286)
T 1q7f_A 32 PSGVAVNAQNDIIVADT-----NNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY 105 (286)
T ss_dssp EEEEEECTTCCEEEEEG-----GGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred CceEEECCCCCEEEEEC-----CCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence 46799999999888755 56889999976 77777664321 01122337788 57888777763 6799999
Q ss_pred eCCCCCCceeeeee---cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCC
Q 013871 76 DTTDFPKGILYRLR---VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRG 152 (434)
Q Consensus 76 ~~~~~~~~~~~~~~---~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~ 152 (434)
+... . ....+. ...+..++++|++ ..+.. +. ..+.|.+ |+++
T Consensus 106 d~~g-~--~~~~~~~~~~~~~~~i~~~~~g-~l~v~---~~--~~~~i~~--------------------------~~~~ 150 (286)
T 1q7f_A 106 NQYG-Q--FVRKFGATILQHPRGVTVDNKG-RIIVV---EC--KVMRVII--------------------------FDQN 150 (286)
T ss_dssp CTTS-C--EEEEECTTTCSCEEEEEECTTS-CEEEE---ET--TTTEEEE--------------------------ECTT
T ss_pred CCCC-c--EEEEecCccCCCceEEEEeCCC-CEEEE---EC--CCCEEEE--------------------------EcCC
Confidence 8432 2 111221 1234555555553 11110 00 0112222 2222
Q ss_pred CCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeE
Q 013871 153 STGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPIL 232 (434)
Q Consensus 153 G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~ 232 (434)
|+.+.. +... .....+..++++|+|+.++ +...++.|.+||..+..+.
T Consensus 151 g~~~~~---------------------~~~~---------~~~~~p~~i~~~~~g~l~v--~~~~~~~i~~~~~~g~~~~ 198 (286)
T 1q7f_A 151 GNVLHK---------------------FGCS---------KHLEFPNGVVVNDKQEIFI--SDNRAHCVKVFNYEGQYLR 198 (286)
T ss_dssp SCEEEE---------------------EECT---------TTCSSEEEEEECSSSEEEE--EEGGGTEEEEEETTCCEEE
T ss_pred CCEEEE---------------------eCCC---------CccCCcEEEEECCCCCEEE--EECCCCEEEEEcCCCCEEE
Confidence 222110 0000 1123578999999987444 4556789999999887777
Q ss_pred EeCC----cCeeEEEECCCCCeEEEEecCCCCC-eEEEEEccCCEEEEEeeCC----CceEEEECCCCCEEEEEEcCCce
Q 013871 233 ELGS----GPYNTVRWNPKGKFLCLAGFGNLPG-DMAFWDYVDGKQLGTTRAE----CSVTSEWSPDGRYFMTATTAPRL 303 (434)
Q Consensus 233 ~~~~----~~~~~i~~SP~g~~l~~~~~~~~~g-~i~iwd~~~~~~i~~~~~~----~~~~~~wspdg~~l~tas~~prl 303 (434)
.+.. .....|+++|+|+++++.. .++ .|.+||.+ ++.+..+..+ .+..++++|||+.+++ ..
T Consensus 199 ~~~~~g~~~~p~~i~~d~~G~l~v~~~---~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~---- 269 (286)
T 1q7f_A 199 QIGGEGITNYPIGVGINSNGEILIADN---HNNFNLTIFTQD-GQLISALESKVKHAQCFDVALMDDGSVVLA-SK---- 269 (286)
T ss_dssp EESCTTTSCSEEEEEECTTCCEEEEEC---SSSCEEEEECTT-SCEEEEEEESSCCSCEEEEEEETTTEEEEE-ET----
T ss_pred EEccCCccCCCcEEEECCCCCEEEEeC---CCCEEEEEECCC-CCEEEEEcccCCCCcceeEEECCCCcEEEE-CC----
Confidence 6632 4568899999998776654 233 89999964 5555555432 3456999999986666 56
Q ss_pred eeCCcEEEEeecC
Q 013871 304 QIDNGIKIFHHNG 316 (434)
Q Consensus 304 ~~D~~i~iw~~~g 316 (434)
|+.|+||++..
T Consensus 270 --~~~v~v~~~~~ 280 (286)
T 1q7f_A 270 --DYRLYIYRYVQ 280 (286)
T ss_dssp --TTEEEEEECSC
T ss_pred --CCeEEEEEccc
Confidence 99999999754
No 186
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.49 E-value=1.6e-11 Score=128.41 Aligned_cols=250 Identities=11% Similarity=0.082 Sum_probs=156.9
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-C-----------
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-T----------- 69 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~----------- 69 (434)
|..++|||||++|+......+.+...|+|||+.+|+.+...... .....+.|| ||+.|++.. +
T Consensus 131 l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~----~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~ 205 (693)
T 3iuj_A 131 LDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKD----VKFSGISWL-GNEGFFYSSYDKPDGSELSART 205 (693)
T ss_dssp EEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEE----EESCCCEEE-TTTEEEEEESSCCC-------C
T ss_pred EEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCC----ceeccEEEe-CCCEEEEEEecCcccccccccC
Confidence 45679999999999876555555678999999999876542221 112267999 999888774 3
Q ss_pred --CeEEEEeCCCCCCce--eeeeec---CCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeeccc
Q 013871 70 --NEIQFFDTTDFPKGI--LYRLRV---PGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRC 142 (434)
Q Consensus 70 --~~i~v~~~~~~~~~~--~~~~~~---~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~ 142 (434)
..|.+|++....... ...... ..+.++.|||+ +..+++... .......+.++++.+. ......+.....
T Consensus 206 ~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpD-g~~l~~~~~-~~~~~~~i~~~d~~~~--~~~~~~l~~~~~ 281 (693)
T 3iuj_A 206 DQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTED-DRFLLISAA-NSTSGNRLYVKDLSQE--NAPLLTVQGDLD 281 (693)
T ss_dssp CCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTT-SCEEEEEEE-SSSSCCEEEEEETTST--TCCCEEEECSSS
T ss_pred CCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCC-CCEEEEEEc-cCCCCcEEEEEECCCC--CCceEEEeCCCC
Confidence 248999987643211 111111 23678899999 455544433 2334468899998652 223334443333
Q ss_pred ceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcce---eeeecCCCCCeEEEEECcCCCEEEEEEccCCC
Q 013871 143 STVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHE---GLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPA 219 (434)
Q Consensus 143 ~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~---~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~ 219 (434)
..... |+++|..+++.+..+ . ....|+.+++.+... ..+. .+...+. .|+|+++.+++.+. .++
T Consensus 282 ~~~~~-~~~~g~~l~~~t~~~--~------~~~~l~~~d~~~~~~~~~~~l~-~~~~~~~--~~s~~g~~lv~~~~-~~g 348 (693)
T 3iuj_A 282 ADVSL-VDNKGSTLYLLTNRD--A------PNRRLVTVDAANPGPAHWRDLI-PERQQVL--TVHSGSGYLFAEYM-VDA 348 (693)
T ss_dssp SCEEE-EEEETTEEEEEECTT--C------TTCEEEEEETTSCCGGGCEEEE-CCCSSCE--EEEEETTEEEEEEE-ETT
T ss_pred ceEEE-EeccCCEEEEEECCC--C------CCCEEEEEeCCCCCccccEEEe-cCCCCEE--EEEEECCEEEEEEE-ECC
Confidence 33333 788899988765422 1 123477777665422 2222 2233333 89999999987543 344
Q ss_pred --eEEEEecccceeEEe---CCcCeeEEEECCCCCeEEEEecC-CCCCeEEEEEccCCEE
Q 013871 220 --SATIFNKKCRPILEL---GSGPYNTVRWNPKGKFLCLAGFG-NLPGDMAFWDYVDGKQ 273 (434)
Q Consensus 220 --~v~l~d~~~~~~~~~---~~~~~~~i~~SP~g~~l~~~~~~-~~~g~i~iwd~~~~~~ 273 (434)
.|.+||+++.....+ +.+.+..+.++|+++.|++...+ ...+.|+.||+.+++.
T Consensus 349 ~~~l~~~d~~g~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~ 408 (693)
T 3iuj_A 349 TARVEQFDYEGKRVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI 408 (693)
T ss_dssp EEEEEEECTTSCEEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred eeEEEEEECCCCeeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence 788999987666555 23456677889999866665322 3468999999987753
No 187
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.47 E-value=3.5e-10 Score=109.07 Aligned_cols=277 Identities=8% Similarity=0.007 Sum_probs=163.2
Q ss_pred EecCCCcEEEEEecCCCCCCC--cEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-----------CCeE
Q 013871 6 TCLRVGLIIQTFQKSSTPQEK--NVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-----------TNEI 72 (434)
Q Consensus 6 ~fSP~g~~L~t~~~~~~~~d~--~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-----------~~~i 72 (434)
..+|+++++...... ..+. .|.++|..+++.+.++... ..+.+++||||++++... ++.|
T Consensus 27 ~~~~~~~~~yv~~~~--~~~~~~~v~v~D~~t~~~~~~i~~g-----~~p~i~~spDg~~lyv~n~~~~~~~rg~~~~~v 99 (373)
T 2mad_H 27 APGADGRRSYINLPA--HHSAIIQQWVLDAGSGSILGHVNGG-----FLPNPVAAHSGSEFALASTSFSRIAKGKRTDYV 99 (373)
T ss_pred cCCCCCCEEEEeCCc--ccCCccEEEEEECCCCeEEEEecCC-----CCCCeEECCCCCEEEEEeccccccccCCCCCeE
Confidence 356889887765521 0111 8899999999988777543 223789999999888774 4689
Q ss_pred EEEeCCCCCCceeeeeec---------CCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceee-eeeccc
Q 013871 73 QFFDTTDFPKGILYRLRV---------PGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLAR-RSFFRC 142 (434)
Q Consensus 73 ~v~~~~~~~~~~~~~~~~---------~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~-~~~~~~ 142 (434)
.+||...... ...+.. ..-..+.|||++ ..+.+... .....|.+++ .+ ++.+.. .....
T Consensus 100 ~viD~~t~~~--~~~i~~~~~~~~~~g~~p~~~~~spDG-~~l~v~n~---~~~~~v~viD-~t---~~~~~~~i~~~~- 168 (373)
T 2mad_H 100 EVFDPVTFLP--IADIELPDAPRFDVGPYSWMNANTPNN-ADLLFFQF---AAGPAVGLVV-QG---GSSDDQLLSSPT- 168 (373)
T ss_pred EEEECCCCcE--EEEEECCCccccccCCCccceEECCCC-CEEEEEec---CCCCeEEEEE-CC---CCEEeEEcCCCc-
Confidence 9999876543 222322 224578999994 44433221 1135788999 76 555544 32211
Q ss_pred ceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeec----CCCCCe-EEEEECcCCCEEEEEEccC
Q 013871 143 STVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL----RKEGPV-HDVQWSYSGSEFAVVYGFM 217 (434)
Q Consensus 143 ~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l----~~~~~i-~~v~wspdg~~~av~~g~~ 217 (434)
++...++|...++.... |. .+..++..+........ ....++ ....+.+++..+++++ .
T Consensus 169 ---~~~~~~~~~~~~~~~~~--dg---------~~~~vd~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~--~ 232 (373)
T 2mad_H 169 ---CYHIHPGAPSTFYLLCA--QG---------GLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPV--Y 232 (373)
T ss_pred ---eEEEEeCCCceEEEEcC--CC---------CEEEEECCCcEEEEEeccccccCCcceeecceeEecCCEEEEEc--C
Confidence 12333444443322111 11 12222221111101100 112232 2356777777766543 3
Q ss_pred CCeEEEEecccce---eEEe--C----------CcCeeEEEECCCCCeEEEEecCC-------CCCeEEEEEccCCEEEE
Q 013871 218 PASATIFNKKCRP---ILEL--G----------SGPYNTVRWNPKGKFLCLAGFGN-------LPGDMAFWDYVDGKQLG 275 (434)
Q Consensus 218 ~~~v~l~d~~~~~---~~~~--~----------~~~~~~i~~SP~g~~l~~~~~~~-------~~g~i~iwd~~~~~~i~ 275 (434)
.+.+.+.|+.... +..+ . ......+.++|+|+.+.++.... ..+.|.++|..+++.+.
T Consensus 233 ~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~ 312 (373)
T 2mad_H 233 SGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSS 312 (373)
T ss_pred CceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEE
Confidence 5688888885432 1111 1 12234478999999777764210 13589999999999988
Q ss_pred EeeCC-CceEEEECCCCC-EEEEEEcCCceeeCCcEEEEeec-Cceeee
Q 013871 276 TTRAE-CSVTSEWSPDGR-YFMTATTAPRLQIDNGIKIFHHN-GSLFFK 321 (434)
Q Consensus 276 ~~~~~-~~~~~~wspdg~-~l~tas~~prl~~D~~i~iw~~~-g~~~~~ 321 (434)
.+... ....++|+|||+ .++++... ++.|.++|.. ++.+..
T Consensus 313 ~i~~g~~p~~i~~s~Dg~~~l~v~~~~-----~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 313 QISLGHDVDAISVAQDGGPDLYALSAG-----TEVLHIYDAGAGDQDQS 356 (373)
T ss_pred EEECCCCcCeEEECCCCCeEEEEEcCC-----CCeEEEEECCCCCEEee
Confidence 88654 577799999999 66666532 8999999985 455443
No 188
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.41 E-value=1.9e-10 Score=112.16 Aligned_cols=288 Identities=8% Similarity=0.005 Sum_probs=174.4
Q ss_pred cCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-----------CCeEEEEe
Q 013871 8 LRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-----------TNEIQFFD 76 (434)
Q Consensus 8 SP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-----------~~~i~v~~ 76 (434)
.|+++++...........+.|.+.|+.+++.+.++.... .+.+.+|||++++..+. ++.|.++|
T Consensus 81 ~~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~-----~Pgia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD 155 (426)
T 3c75_H 81 APDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGF-----LPHPVAAEDGSFFAQASTVFERIARGKRTDYVEVFD 155 (426)
T ss_dssp CCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECS-----SCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred CCCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCC-----CCceEECCCCCEEEEEeccccccccCCCCCEEEEEE
Confidence 367887776662211111689999999999999987653 23789999999777653 46899999
Q ss_pred CCCCCCceeeeeec---------CCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeeccc-----
Q 013871 77 TTDFPKGILYRLRV---------PGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRC----- 142 (434)
Q Consensus 77 ~~~~~~~~~~~~~~---------~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~----- 142 (434)
..+... ...+.+ .....+.++|++ .++.+... ...+.|.+.|+.+ .+.+..+.....
T Consensus 156 ~~t~~v--v~~I~v~g~~r~~~g~~P~~~~~spDG-k~lyV~n~---~~~~~VsVID~~t---~kvv~~I~v~g~~~~~p 226 (426)
T 3c75_H 156 PVTFLP--IADIELPDAPRFLVGTYQWMNALTPDN-KNLLFYQF---SPAPAVGVVDLEG---KTFDRMLDVPDCYHIFP 226 (426)
T ss_dssp TTTCCE--EEEEEETTCCCCCBSCCGGGSEECTTS-SEEEEEEC---SSSCEEEEEETTT---TEEEEEEECCSEEEEEE
T ss_pred CCCCcE--EEEEECCCccccccCCCcceEEEcCCC-CEEEEEec---CCCCeEEEEECCC---CeEEEEEEcCCceeecc
Confidence 988653 233333 234578999994 44333211 1246799999987 566655544221
Q ss_pred --ceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCe-EEEEECcCCCEEEEEEccCCC
Q 013871 143 --STVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPV-HDVQWSYSGSEFAVVYGFMPA 219 (434)
Q Consensus 143 --~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i-~~v~wspdg~~~av~~g~~~~ 219 (434)
...-+.++++|+.+.+.. ..++. .... . ..+.+. ..++ ..+.+++++..++++. . .+
T Consensus 227 ~g~~~~v~~~~dG~~~~V~~-----~~~~v------~~~~-~-----~~~~v~-~~p~~~~~~~~~dg~~~~~~s-~-~g 286 (426)
T 3c75_H 227 ASPTVFYMNCRDGSLARVDF-----ADGET------KVTN-T-----EVFHTE-DELLINHPAFSLRSGRLVWPT-Y-TG 286 (426)
T ss_dssp EETTEEEEEETTSSEEEEEC-----CTTCC------EEEE-C-----CCCSCT-TSCBCSCCEECTTTCEEEEEB-T-TS
T ss_pred CCCcEEEEEcCCCCEEEEEC-----CCCcE------EEEe-e-----eeeccC-CCceeeEeeecCCCCEEEEEe-C-CC
Confidence 111234455555433321 01110 0000 0 011111 1222 2467899999888753 3 56
Q ss_pred eEEEEecccceeEEeC---------------CcCeeEEEECCCCCeEEEEecCC-------CCCeEEEEEccCCEEEEEe
Q 013871 220 SATIFNKKCRPILELG---------------SGPYNTVRWNPKGKFLCLAGFGN-------LPGDMAFWDYVDGKQLGTT 277 (434)
Q Consensus 220 ~v~l~d~~~~~~~~~~---------------~~~~~~i~~SP~g~~l~~~~~~~-------~~g~i~iwd~~~~~~i~~~ 277 (434)
.+.+.|.....+.... ......++++|+|+.+.++.... ..+.|.++|+.+++.+..+
T Consensus 287 ~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I 366 (426)
T 3c75_H 287 KIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKI 366 (426)
T ss_dssp EEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEE
T ss_pred cEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEE
Confidence 8999998644322111 11223479999999777653210 1247999999999998888
Q ss_pred eCC-CceEEEECCCCC-EEEEEEcCCceeeCCcEEEEee-cCceeeee-ecccceeeEEEc
Q 013871 278 RAE-CSVTSEWSPDGR-YFMTATTAPRLQIDNGIKIFHH-NGSLFFKK-MFDKLFQAEWKP 334 (434)
Q Consensus 278 ~~~-~~~~~~wspdg~-~l~tas~~prl~~D~~i~iw~~-~g~~~~~~-~~~~~~~~~w~p 334 (434)
... ....++|+|||+ +++++... ++.|.|+|. +++.+... ....-..+...|
T Consensus 367 ~vg~~P~gia~spDg~~~lyv~n~~-----s~~VsVID~~t~kvv~tI~~vG~~P~~i~~~ 422 (426)
T 3c75_H 367 ELGHEIDSINVSQDAEPLLYALSAG-----TQTLHIYDAATGEELRSVDQLGRGPQIITTH 422 (426)
T ss_dssp EEEEEECEEEECCSSSCEEEEEETT-----TTEEEEEETTTCCEEEEECCCSSSCCEEECC
T ss_pred ECCCCcCeEEEccCCCEEEEEEcCC-----CCeEEEEECCCCCEEEEecCCCCCCcEEEcC
Confidence 654 467799999999 88887743 899999998 45555553 333333333333
No 189
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.38 E-value=3.7e-10 Score=108.31 Aligned_cols=293 Identities=10% Similarity=0.018 Sum_probs=177.0
Q ss_pred eEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-----------CCeE
Q 013871 4 LLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-----------TNEI 72 (434)
Q Consensus 4 ~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-----------~~~i 72 (434)
.....|+|+.|..........++.|.+.|..+++.+.++.... . +.+.+||||++++.+. ++.|
T Consensus 37 ~~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~---~--P~va~spDG~~lyVan~~~~r~~~G~~~~~V 111 (386)
T 3sjl_D 37 LEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGF---L--PNPVVADDGSFIAHASTVFSRIARGERTDYV 111 (386)
T ss_dssp CCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECS---S--CEEEECTTSSCEEEEEEEEEETTEEEEEEEE
T ss_pred eeccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCC---C--CcEEECCCCCEEEEEcccccccccCCCCCEE
Confidence 3457899998887763211125789999999999999887643 2 3589999999876653 4689
Q ss_pred EEEeCCCCCCceeeeeecC---------CeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeeccc-
Q 013871 73 QFFDTTDFPKGILYRLRVP---------GVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRC- 142 (434)
Q Consensus 73 ~v~~~~~~~~~~~~~~~~~---------~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~- 142 (434)
.+||..+... ...+... .-..+.++|++ ..+.+... ...+.|.++|+.+ .+.+.+......
T Consensus 112 sviD~~t~~v--~~~I~v~~g~r~~~g~~P~~~a~spDG-k~lyVan~---~~~~~VsVID~~t---~~vv~tI~v~g~~ 182 (386)
T 3sjl_D 112 EVFDPVTLLP--TADIELPDAPRFLVGTYPWMTSLTPDG-KTLLFYQF---SPAPAVGVVDLEG---KAFKRMLDVPDCY 182 (386)
T ss_dssp EEECTTTCCE--EEEEEETTCCCCCBSCCGGGEEECTTS-SEEEEEEC---SSSCEEEEEETTT---TEEEEEEECCSEE
T ss_pred EEEECCCCeE--EEEEECCCccccccCCCCceEEEcCCC-CEEEEEEc---CCCCeEEEEECCC---CcEEEEEECCCcc
Confidence 9999988653 2333322 35568999995 44333211 1236899999988 666666543211
Q ss_pred ------ceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeE-EEEEC-cCCCEEEEEE
Q 013871 143 ------STVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVH-DVQWS-YSGSEFAVVY 214 (434)
Q Consensus 143 ------~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~-~v~ws-pdg~~~av~~ 214 (434)
...-+..++||+.+.+. .+..++. + ... ...+... ..++. ...|. ++|+.+.+
T Consensus 183 ~~~P~g~~~~~~~~~DG~~~~v~----~~~~g~v------~---~~~---~~~~~~~-~~~~~~~~~~~~~dG~~~~v-- 243 (386)
T 3sjl_D 183 HIFPTAPDTFFMHCRDGSLAKVA----FGTEGTP------E---ITH---TEVFHPE-DEFLINHPAYSQKAGRLVWP-- 243 (386)
T ss_dssp EEEEEETTEEEEEETTSCEEEEE----CCSSSCC------E---EEE---CCCCSCT-TSCBCSCCEEETTTTEEEEE--
T ss_pred eeecCCCceeEEECCCCCEEEEE----CCCCCeE------E---Eee---cceeccc-cccccccceeEcCCCcEEEE--
Confidence 11112455666644332 1111111 0 000 0011111 23332 24664 67755443
Q ss_pred ccCCCeEEEEecccceeEEe---------------CCcCeeEEEECCCCCeEEEEecC----C---CCCeEEEEEccCCE
Q 013871 215 GFMPASATIFNKKCRPILEL---------------GSGPYNTVRWNPKGKFLCLAGFG----N---LPGDMAFWDYVDGK 272 (434)
Q Consensus 215 g~~~~~v~l~d~~~~~~~~~---------------~~~~~~~i~~SP~g~~l~~~~~~----~---~~g~i~iwd~~~~~ 272 (434)
.+ .+++.++|+.+...... ..+....++++|+++.+.++... . -...|.++|+++++
T Consensus 244 s~-~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~k 322 (386)
T 3sjl_D 244 TY-TGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGE 322 (386)
T ss_dssp BT-TSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCC
T ss_pred eC-CCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCe
Confidence 22 57999999865432111 11233458889999987776421 0 12479999999999
Q ss_pred EEEEeeCC-CceEEEECCCCC-EEEEEEcCCceeeCCcEEEEee-cCceeeeeec-ccceeeEEEcC
Q 013871 273 QLGTTRAE-CSVTSEWSPDGR-YFMTATTAPRLQIDNGIKIFHH-NGSLFFKKMF-DKLFQAEWKPV 335 (434)
Q Consensus 273 ~i~~~~~~-~~~~~~wspdg~-~l~tas~~prl~~D~~i~iw~~-~g~~~~~~~~-~~~~~~~w~p~ 335 (434)
.+..+.-. .+..|++||||+ +|+++... ++.|.++|. +++.+..... ..-.++.+.++
T Consensus 323 v~~~i~vg~~~~~lavs~D~~~~ly~tn~~-----~~~VsViD~~t~k~~~~i~~~~~p~~l~~s~d 384 (386)
T 3sjl_D 323 RLAKFEMGHEIDSINVSQDEKPLLYALSTG-----DKTLYIHDAESGEELRSVNQLGHGPQVITTAD 384 (386)
T ss_dssp EEEEEEEEEEECEEEECSSSSCEEEEEETT-----TTEEEEEETTTCCEEEEECCCCSSCCEEEECC
T ss_pred EEEEEECCCCcceEEECCCCCeEEEEEcCC-----CCeEEEEECCCCcEEEEecCCCCCceeEECCc
Confidence 88887654 556799999997 66665442 899999998 6666665543 23444555543
No 190
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.38 E-value=9.9e-10 Score=103.69 Aligned_cols=243 Identities=10% Similarity=-0.000 Sum_probs=141.3
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC-----CeEEEEe
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT-----NEIQFFD 76 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~-----~~i~v~~ 76 (434)
+.+++|+|+|+.+++.. .++.|.+||..+++....+.... ..+..+.|++||++++.... +.|.+|+
T Consensus 47 ~~~~~~~~~g~l~~~~~-----~~~~i~~~d~~~~~~~~~~~~~~---~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d 118 (333)
T 2dg1_A 47 LEGLNFDRQGQLFLLDV-----FEGNIFKINPETKEIKRPFVSHK---ANPAAIKIHKDGRLFVCYLGDFKSTGGIFAAT 118 (333)
T ss_dssp EEEEEECTTSCEEEEET-----TTCEEEEECTTTCCEEEEEECSS---SSEEEEEECTTSCEEEEECTTSSSCCEEEEEC
T ss_pred ccCcEECCCCCEEEEEC-----CCCEEEEEeCCCCcEEEEeeCCC---CCcceEEECCCCcEEEEeCCCCCCCceEEEEe
Confidence 35789999999776655 56889999998887644332221 44558999999998887654 4899999
Q ss_pred CCCCCCceeee--eecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCC
Q 013871 77 TTDFPKGILYR--LRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGST 154 (434)
Q Consensus 77 ~~~~~~~~~~~--~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~ 154 (434)
........... .....+..+.++|++...++. ...........||.+... ...+............+.|+|+|+
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~--~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~i~~~~dg~ 194 (333)
T 2dg1_A 119 ENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTD--FRGYSTNPLGGVYYVSPD--FRTVTPIIQNISVANGIALSTDEK 194 (333)
T ss_dssp TTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEE--CCCBTTBCCEEEEEECTT--SCCEEEEEEEESSEEEEEECTTSS
T ss_pred CCCCEEEEEEccCccCCcccceEECCCCCEEEEe--ccccccCCCceEEEEeCC--CCEEEEeecCCCcccceEECCCCC
Confidence 87643211111 112357889999985322221 110011123355555431 122222222222456789999999
Q ss_pred eEEEEEEecccccCceeecceeEEEEeeC--Cccee----e--eecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEec
Q 013871 155 GLLAVAQSDVDKTNQSYYGESKLNYLTTD--GTHEG----L--VPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNK 226 (434)
Q Consensus 155 ~l~~~~~~~~d~~~~~~~g~~~l~~l~~~--~~~~~----~--v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~ 226 (434)
.|++.... ...|+.++.. +.... . ..+.....+..++++++|+.++ +...++.|.+||.
T Consensus 195 ~l~v~~~~-----------~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v--~~~~~~~v~~~d~ 261 (333)
T 2dg1_A 195 VLWVTETT-----------ANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYV--AMYGQGRVLVFNK 261 (333)
T ss_dssp EEEEEEGG-----------GTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEE--EEETTTEEEEECT
T ss_pred EEEEEeCC-----------CCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEE--EEcCCCEEEEECC
Confidence 87664211 1124445442 21111 1 1111123567899999998665 3444679999999
Q ss_pred ccceeEEeC--Cc------CeeEEEECCCCCeEEEEecCC---CCCeEEEEEcc
Q 013871 227 KCRPILELG--SG------PYNTVRWNPKGKFLCLAGFGN---LPGDMAFWDYV 269 (434)
Q Consensus 227 ~~~~~~~~~--~~------~~~~i~~SP~g~~l~~~~~~~---~~g~i~iwd~~ 269 (434)
++..+..+. .. .+..++|+|||+.|++++.+. ..|.|+-++..
T Consensus 262 ~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g~~~~~~~l~~~~~~ 315 (333)
T 2dg1_A 262 RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNGF 315 (333)
T ss_dssp TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEECS
T ss_pred CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCccCCCCCceEEEEecc
Confidence 776665552 22 578899999998777665331 12345555543
No 191
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.33 E-value=2.5e-10 Score=119.31 Aligned_cols=247 Identities=9% Similarity=0.008 Sum_probs=149.9
Q ss_pred CCCeeeecCCCcEEEEecC------CeEEEEeCCCCCCceeeeeecCCe--eEEEEeCCCCCeEEEEecCCC--------
Q 013871 51 TWPSIRFSSDEAVACRMAT------NEIQFFDTTDFPKGILYRLRVPGV--AAFEVSKAPGSHVAVFVPESK-------- 114 (434)
Q Consensus 51 ~~~~~~~S~d~~~la~~~~------~~i~v~~~~~~~~~~~~~~~~~~v--~~~~~sp~~~~~ia~~~~~~~-------- 114 (434)
.+..++|||||++||.+.+ .+|++||+.+... .....+++ ..++|+ | +..|++......
T Consensus 130 ~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~---~~~~~~~~k~~~~~Ws-D-g~~l~y~~~~~~~~~~~~~~ 204 (693)
T 3iuj_A 130 ALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQP---LETPLKDVKFSGISWL-G-NEGFFYSSYDKPDGSELSAR 204 (693)
T ss_dssp EEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSE---EEEEEEEEESCCCEEE-T-TTEEEEEESSCCC-------
T ss_pred EEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCC---CccccCCceeccEEEe-C-CCEEEEEEecCccccccccc
Confidence 3446799999999997631 3799999987542 23344444 578999 7 555655443322
Q ss_pred CCCceEEEEEcCCCCCCC--ceeeeee-cccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeee
Q 013871 115 GSPASVQIYACGKDLQSQ--PLARRSF-FRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVP 191 (434)
Q Consensus 115 ~~~~~v~i~~~~~~~~~~--~i~~~~~-~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~ 191 (434)
+.+..|.+|++.+.. .. .+..... +......+.|+|||++|++....... ...+|++++.+.......
T Consensus 205 ~~~~~v~~~~lgt~~-~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~--------~~~i~~~d~~~~~~~~~~ 275 (693)
T 3iuj_A 205 TDQHKVYFHRLGTAQ-EDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTS--------GNRLYVKDLSQENAPLLT 275 (693)
T ss_dssp CCCCEEEEEETTSCG-GGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSS--------CCEEEEEETTSTTCCCEE
T ss_pred CCCcEEEEEECCCCc-ccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCC--------CcEEEEEECCCCCCceEE
Confidence 456689999986521 11 1221111 22235678999999998775432211 125788876554222222
Q ss_pred cC-CCCCeEEEEECcCCCEEEEEEccC--CCeEEEEeccccee---EEe--CCcCeeEEEECCCCCeEEEEecCCCCCeE
Q 013871 192 LR-KEGPVHDVQWSYSGSEFAVVYGFM--PASATIFNKKCRPI---LEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDM 263 (434)
Q Consensus 192 l~-~~~~i~~v~wspdg~~~av~~g~~--~~~v~l~d~~~~~~---~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i 263 (434)
+. ........ |+++|..|++.+... ..+|..+|+..... ..+ +...+. .|+|+|++|++....+....|
T Consensus 276 l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l 352 (693)
T 3iuj_A 276 VQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARV 352 (693)
T ss_dssp EECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEE
T ss_pred EeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEE
Confidence 22 23333444 888999998876442 25888899864321 333 333333 999999999887754433479
Q ss_pred EEEEccCCEEEEEee--CC-CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc
Q 013871 264 AFWDYVDGKQLGTTR--AE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS 317 (434)
Q Consensus 264 ~iwd~~~~~~i~~~~--~~-~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~ 317 (434)
++||++.+.. ..+. .. .+..+.++||+..|+....++. .-..+..||+.+.
T Consensus 353 ~~~d~~g~~~-~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~--tP~~l~~~d~~~g 406 (693)
T 3iuj_A 353 EQFDYEGKRV-REVALPGLGSVSGFNGKHDDPALYFGFENYA--QPPTLYRFEPKSG 406 (693)
T ss_dssp EEECTTSCEE-EEECCSSSSEEEECCCCTTCSCEEEEEECSS--SCCEEEEECTTTC
T ss_pred EEEECCCCee-EEeecCCCceEEeeecCCCCCEEEEEecCCC--CCCEEEEEECCCC
Confidence 9999886543 3332 22 3344788999988777665211 1367888887543
No 192
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.32 E-value=5e-09 Score=100.96 Aligned_cols=245 Identities=9% Similarity=-0.003 Sum_probs=142.7
Q ss_pred eEEecCCCcEEEEEecCC-----CCCCCcEEEEEcCCCcEEEEEeec-CcC---CCCCCeeeecCCCcEEEEec---CCe
Q 013871 4 LLTCLRVGLIIQTFQKSS-----TPQEKNVILWKTETGEAVYQLFQK-NMT---KTTWPSIRFSSDEAVACRMA---TNE 71 (434)
Q Consensus 4 ~l~fSP~g~~L~t~~~~~-----~~~d~~v~iWd~~~g~~~~~~~~~-~~~---~~~~~~~~~S~d~~~la~~~---~~~ 71 (434)
.++|||||++|....... +..++.|.+||+.+++.+.++... ... ...-..+.|||||++|+... +++
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~ 149 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA 149 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCe
Confidence 589999999999876321 123577999999999888776542 000 01112689999999998763 368
Q ss_pred EEEEeCCCCCCceeee-eecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeee---ecccce---
Q 013871 72 IQFFDTTDFPKGILYR-LRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRS---FFRCST--- 144 (434)
Q Consensus 72 i~v~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~---~~~~~~--- 144 (434)
|.++| ..... ... +..++. +.+.|++...+.... .++.+.+++. . +..+.... .+ ...
T Consensus 150 v~viD-~t~~~--~~~~i~~~~~--~~~~~~~~~~~~~~~-----~dg~~~~vd~-~---g~~~~~~~~~~~~-~~~~p~ 214 (373)
T 2mad_H 150 VGLVV-QGGSS--DDQLLSSPTC--YHIHPGAPSTFYLLC-----AQGGLAKTDH-A---GGAAGAGLVGAML-TAAQNL 214 (373)
T ss_pred EEEEE-CCCCE--EeEEcCCCce--EEEEeCCCceEEEEc-----CCCCEEEEEC-C---CcEEEEEeccccc-cCCcce
Confidence 99999 76432 333 443332 445555433332222 2345666666 4 33332111 11 111
Q ss_pred -eEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCccee---eeecC---------CCCCeEEEEECcCCCEEE
Q 013871 145 -VQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEG---LVPLR---------KEGPVHDVQWSYSGSEFA 211 (434)
Q Consensus 145 -~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~---~v~l~---------~~~~i~~v~wspdg~~~a 211 (434)
....+.+++..+++... . + .++.++..+.... .+.+. .......++++||++++.
T Consensus 215 ~~~~~~~~~~~~~~~~~~-----~-----~--~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~ly 282 (373)
T 2mad_H 215 LTQPAQANKSGRIVWPVY-----S-----G--KILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIY 282 (373)
T ss_pred eecceeEecCCEEEEEcC-----C-----c--eEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEE
Confidence 11234445554443321 0 1 2455544332111 11110 023345688999999888
Q ss_pred EEEcc--------CCCeEEEEecccce-eEEeC-CcCeeEEEECCCCC-eEEEEecCCCCCeEEEEEccCCEEEEEe
Q 013871 212 VVYGF--------MPASATIFNKKCRP-ILELG-SGPYNTVRWNPKGK-FLCLAGFGNLPGDMAFWDYVDGKQLGTT 277 (434)
Q Consensus 212 v~~g~--------~~~~v~l~d~~~~~-~~~~~-~~~~~~i~~SP~g~-~l~~~~~~~~~g~i~iwd~~~~~~i~~~ 277 (434)
+.... ..+.|.++|++... +..+. ......+.|+|||+ +++++..+ ++.|.++|..+++.+..+
T Consensus 283 V~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v~~~~--~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 283 LLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSAG--TEVLHIYDAGAGDQDQST 357 (373)
T ss_pred EEeccCCcccccCCCCeEEEEECCCCEEEEEEECCCCcCeEEECCCCCeEEEEEcCC--CCeEEEEECCCCCEEeee
Confidence 75332 13489999997554 45553 33478999999999 66665533 369999999999988773
No 193
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.32 E-value=5e-10 Score=107.36 Aligned_cols=259 Identities=11% Similarity=0.095 Sum_probs=146.8
Q ss_pred EEecCCCcEEEEEecCC-----CCCCCcEEEEEcCCCcEEEEEeecCc-----CCCCCCeeeecCCCcEEEEec---CCe
Q 013871 5 LTCLRVGLIIQTFQKSS-----TPQEKNVILWKTETGEAVYQLFQKNM-----TKTTWPSIRFSSDEAVACRMA---TNE 71 (434)
Q Consensus 5 l~fSP~g~~L~t~~~~~-----~~~d~~v~iWd~~~g~~~~~~~~~~~-----~~~~~~~~~~S~d~~~la~~~---~~~ 71 (434)
|.|||||++|.....+. +..++.|.+||+.+++.+.++..... ....+ .+.|||||+++.... ++.
T Consensus 83 va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~-~~a~spDGk~lyVan~~~~~~ 161 (386)
T 3sjl_D 83 PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPW-MTSLTPDGKTLLFYQFSPAPA 161 (386)
T ss_dssp EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGG-GEEECTTSSEEEEEECSSSCE
T ss_pred EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCc-eEEEcCCCCEEEEEEcCCCCe
Confidence 89999999987765211 11246799999999999888764310 00233 789999999877663 479
Q ss_pred EEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeee-eecccce----eE
Q 013871 72 IQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARR-SFFRCST----VQ 146 (434)
Q Consensus 72 i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~-~~~~~~~----~~ 146 (434)
|.++|+.... ...++..++... +.|.+...+....+ ++.+-+.++... +..+... ..+..+. ..
T Consensus 162 VsVID~~t~~--vv~tI~v~g~~~--~~P~g~~~~~~~~~-----DG~~~~v~~~~~--g~v~~~~~~~~~~~~~~~~~~ 230 (386)
T 3sjl_D 162 VGVVDLEGKA--FKRMLDVPDCYH--IFPTAPDTFFMHCR-----DGSLAKVAFGTE--GTPEITHTEVFHPEDEFLINH 230 (386)
T ss_dssp EEEEETTTTE--EEEEEECCSEEE--EEEEETTEEEEEET-----TSCEEEEECCSS--SCCEEEECCCCSCTTSCBCSC
T ss_pred EEEEECCCCc--EEEEEECCCcce--eecCCCceeEEECC-----CCCEEEEECCCC--CeEEEeecceecccccccccc
Confidence 9999998854 334455444321 11221211111111 122333333220 1111111 1111110 01
Q ss_pred EEE-CCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceee---eec-C--------CCCCeEEEEECcCCCEEEEE
Q 013871 147 LNW-NRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGL---VPL-R--------KEGPVHDVQWSYSGSEFAVV 213 (434)
Q Consensus 147 ~~w-s~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~---v~l-~--------~~~~i~~v~wspdg~~~av~ 213 (434)
..| .++|+.+ +.+. . | .+|.++..+..... +.+ . ..+....++++|+++++.+.
T Consensus 231 ~~~~~~dG~~~-~vs~-----~-----g--~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~ 297 (386)
T 3sjl_D 231 PAYSQKAGRLV-WPTY-----T-----G--KIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLL 297 (386)
T ss_dssp CEEETTTTEEE-EEBT-----T-----S--EEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEE
T ss_pred ceeEcCCCcEE-EEeC-----C-----C--EEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEE
Confidence 244 3566433 2211 1 1 35666654432111 110 0 02344457889999999886
Q ss_pred EccC--------CCeEEEEecccce-eEEeC-CcCeeEEEECCCCC-eEEEEecCCCCCeEEEEEccCCEEEEEeeCC-C
Q 013871 214 YGFM--------PASATIFNKKCRP-ILELG-SGPYNTVRWNPKGK-FLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-C 281 (434)
Q Consensus 214 ~g~~--------~~~v~l~d~~~~~-~~~~~-~~~~~~i~~SP~g~-~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-~ 281 (434)
.... .+.|.++|+++.. +..+. ......|.+||||+ +|+++.. .+++|.++|..+++.+.++... .
T Consensus 298 ~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~~~~ly~tn~--~~~~VsViD~~t~k~~~~i~~~~~ 375 (386)
T 3sjl_D 298 VDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALST--GDKTLYIHDAESGEELRSVNQLGH 375 (386)
T ss_dssp EEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSSSCEEEEEET--TTTEEEEEETTTCCEEEEECCCCS
T ss_pred eccccccccCCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCCCeEEEEEcC--CCCeEEEEECCCCcEEEEecCCCC
Confidence 5321 2479999997554 44443 34567999999998 5665543 3479999999999999988765 5
Q ss_pred ceEEEECCC
Q 013871 282 SVTSEWSPD 290 (434)
Q Consensus 282 ~~~~~wspd 290 (434)
...+.+++|
T Consensus 376 p~~l~~s~d 384 (386)
T 3sjl_D 376 GPQVITTAD 384 (386)
T ss_dssp SCCEEEECC
T ss_pred CceeEECCc
Confidence 556777877
No 194
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.31 E-value=4.7e-09 Score=96.79 Aligned_cols=216 Identities=11% Similarity=0.068 Sum_probs=140.2
Q ss_pred CCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCCCceeeeee
Q 013871 10 VGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPKGILYRLR 89 (434)
Q Consensus 10 ~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~~~~~~~~ 89 (434)
.|++|++.+ .|+.|.+||.++|+.+.++..... .....+.++|||++++ ..++.|..||. +.. ...++.
T Consensus 4 ~~~~lv~~~-----~~~~v~~~d~~tG~~~w~~~~~~~--~~~~~~~~~pdG~ilv-s~~~~V~~~d~-~G~--~~W~~~ 72 (276)
T 3no2_A 4 PQHLLVGGS-----GWNKIAIINKDTKEIVWEYPLEKG--WECNSVAATKAGEILF-SYSKGAKMITR-DGR--ELWNIA 72 (276)
T ss_dssp CCEEEEECT-----TCSEEEEEETTTTEEEEEEECCTT--CCCCEEEECTTSCEEE-ECBSEEEEECT-TSC--EEEEEE
T ss_pred CCcEEEeeC-----CCCEEEEEECCCCeEEEEeCCCcc--CCCcCeEECCCCCEEE-eCCCCEEEECC-CCC--EEEEEc
Confidence 468888866 789999999999999999876431 2345889999999998 55678888887 432 223333
Q ss_pred cC---CeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccc
Q 013871 90 VP---GVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDK 166 (434)
Q Consensus 90 ~~---~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~ 166 (434)
.. .+.++.+.|++..+++. . . ....-+.++++|+.+.-
T Consensus 73 ~~~~~~~~~~~~~~dG~~lv~~-~---------------~---------------~~~~v~~vd~~Gk~l~~-------- 113 (276)
T 3no2_A 73 APAGCEMQTARILPDGNALVAW-C---------------G---------------HPSTILEVNMKGEVLSK-------- 113 (276)
T ss_dssp CCTTCEEEEEEECTTSCEEEEE-E---------------S---------------TTEEEEEECTTSCEEEE--------
T ss_pred CCCCccccccEECCCCCEEEEe-c---------------C---------------CCCEEEEEeCCCCEEEE--------
Confidence 21 24444555542211110 0 0 00112344566654321
Q ss_pred cCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeEEeC-CcCeeEEEEC
Q 013871 167 TNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELG-SGPYNTVRWN 245 (434)
Q Consensus 167 ~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~~~-~~~~~~i~~S 245 (434)
+...+... ......+.++..++|+.++ +...++.|..||.+++.+.++. ......+...
T Consensus 114 -------------~~~~~~~~-----~~~~~~~~v~~~~~G~~lv--~~~~~~~v~~~d~~G~~~w~~~~~~~~~~~~~~ 173 (276)
T 3no2_A 114 -------------TEFETGIE-----RPHAQFRQINKNKKGNYLV--PLFATSEVREIAPNGQLLNSVKLSGTPFSSAFL 173 (276)
T ss_dssp -------------EEECCSCS-----SGGGSCSCCEECTTSCEEE--EETTTTEEEEECTTSCEEEEEECSSCCCEEEEC
T ss_pred -------------EeccCCCC-----cccccccCceECCCCCEEE--EecCCCEEEEECCCCCEEEEEECCCCccceeEc
Confidence 11111000 0012344567889999887 4566789999999988888774 3455678889
Q ss_pred CCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--------CceEEEECCCCCEEEEEE
Q 013871 246 PKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--------CSVTSEWSPDGRYFMTAT 298 (434)
Q Consensus 246 P~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--------~~~~~~wspdg~~l~tas 298 (434)
++|++++++.. ++.|..+|.++++.+..+... .+..+...++|..+++..
T Consensus 174 ~~g~~~v~~~~---~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 174 DNGDCLVACGD---AHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp TTSCEEEECBT---TSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred CCCCEEEEeCC---CCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence 99998887663 358999999999998887532 144588899999988875
No 195
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.30 E-value=2.1e-09 Score=99.74 Aligned_cols=223 Identities=12% Similarity=0.056 Sum_probs=136.4
Q ss_pred eeeecCCCc-EEEEe-cCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCC
Q 013871 54 SIRFSSDEA-VACRM-ATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQS 131 (434)
Q Consensus 54 ~~~~S~d~~-~la~~-~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~ 131 (434)
.+.|+||++ ++++. .++.|.+|+.... ..........+..++++|++. +++. . .....|.+|+..+ +
T Consensus 32 g~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~-l~v~-~----~~~~~i~~~d~~~---g 100 (296)
T 3e5z_A 32 GPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGH-LIAC-S----HGLRRLERQREPG---G 100 (296)
T ss_dssp EEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCC-EEEE-E----TTTTEEEEECSTT---C
T ss_pred CCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCc-EEEE-e----cCCCeEEEEcCCC---C
Confidence 789999998 45544 4679999998764 233333445688999999853 3322 1 1235688888755 3
Q ss_pred Cceeeeeecc----cceeEEEECCCCCeEEEEEEec--c-cc----cCceeecceeEEEEeeCCcceeeeecCCCCCeEE
Q 013871 132 QPLARRSFFR----CSTVQLNWNRGSTGLLAVAQSD--V-DK----TNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHD 200 (434)
Q Consensus 132 ~~i~~~~~~~----~~~~~~~ws~~G~~l~~~~~~~--~-d~----~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~ 200 (434)
+......... .....+.++++|+.+ + ++.. . +. ....-.+...||.++..+. ...........+.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~i~~d~~G~l~-v-td~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g~--~~~~~~~~~~~~g 176 (296)
T 3e5z_A 101 EWESIADSFEGKKLNSPNDVCLAPDGSLW-F-SDPTYGIDKPEEGYGGEMELPGRWVFRLAPDGT--LSAPIRDRVKPNG 176 (296)
T ss_dssp CEEEEECEETTEECCCCCCEEECTTSCEE-E-EECSHHHHCGGGSSCCCCCSSSCEEEEECTTSC--EEEEECCCSSEEE
T ss_pred cEEEEeeccCCCCCCCCCCEEECCCCCEE-E-ECCccccccccccccccccCCCcEEEEECCCCC--EEEeecCCCCCcc
Confidence 3221111111 123468899999743 2 2110 0 00 0000001225777765532 1222233456789
Q ss_pred EEECcCCCEEEEEEccCCCeEEEEecc--cce---eEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEE
Q 013871 201 VQWSYSGSEFAVVYGFMPASATIFNKK--CRP---ILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQ 273 (434)
Q Consensus 201 v~wspdg~~~av~~g~~~~~v~l~d~~--~~~---~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~ 273 (434)
++|+|||+.+ + +...++.|.+||+. +.. ...+ +.+....++++++|++++.. + +.|.+||.+ ++.
T Consensus 177 i~~s~dg~~l-v-~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~---~~v~~~~~~-g~~ 248 (296)
T 3e5z_A 177 LAFLPSGNLL-V-SDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--G---DGVHVLTPD-GDE 248 (296)
T ss_dssp EEECTTSCEE-E-EETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--T---TEEEEECTT-SCE
T ss_pred EEECCCCCEE-E-EeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--C---CeEEEECCC-CCE
Confidence 9999999998 5 46667899999985 221 1122 34456789999999966654 3 589999986 666
Q ss_pred EEEeeCC-CceEEEE-CCCCCEEEEEEc
Q 013871 274 LGTTRAE-CSVTSEW-SPDGRYFMTATT 299 (434)
Q Consensus 274 i~~~~~~-~~~~~~w-spdg~~l~tas~ 299 (434)
+..+..+ .+..++| +|||+.|++++.
T Consensus 249 ~~~~~~~~~~~~~~f~~~d~~~L~v~t~ 276 (296)
T 3e5z_A 249 LGRVLTPQTTSNLCFGGPEGRTLYMTVS 276 (296)
T ss_dssp EEEEECSSCCCEEEEESTTSCEEEEEET
T ss_pred EEEEECCCCceeEEEECCCCCEEEEEcC
Confidence 6666543 3667899 699999998885
No 196
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.30 E-value=1.9e-09 Score=101.96 Aligned_cols=269 Identities=9% Similarity=-0.017 Sum_probs=160.3
Q ss_pred CCCCCcEEEEEcCCCcEEEEEeec-C--cCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCCCceeeeee-cCCeeEEE
Q 013871 22 TPQEKNVILWKTETGEAVYQLFQK-N--MTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPKGILYRLR-VPGVAAFE 97 (434)
Q Consensus 22 ~~~d~~v~iWd~~~g~~~~~~~~~-~--~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~~~~~~~~-~~~v~~~~ 97 (434)
+..++.|.+||..+++.+..+... + ........+.+..+.-|++...++.|.+||..+.... .++. ......++
T Consensus 13 g~~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~~~lyv~~~~~~~v~viD~~t~~~~--~~i~~~~~p~~i~ 90 (328)
T 3dsm_A 13 QYSNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRDGIGWIVVNNSHVIFAIDINTFKEV--GRITGFTSPRYIH 90 (328)
T ss_dssp TSCCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEETTEEEEEEGGGTEEEEEETTTCCEE--EEEECCSSEEEEE
T ss_pred CCCCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEECCEEEEEEcCCCEEEEEECcccEEE--EEcCCCCCCcEEE
Confidence 345789999999999876544211 0 0001112456643333333335689999999875532 2232 45678889
Q ss_pred EeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecc-----cceeEEEECCCCCeEEEEEEecccccCceee
Q 013871 98 VSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFR-----CSTVQLNWNRGSTGLLAVAQSDVDKTNQSYY 172 (434)
Q Consensus 98 ~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~-----~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~ 172 (434)
++|++ .+ |+.. ...+.|.+++..+ .+.+....... .....+.+ ++..|++.. ..
T Consensus 91 ~~~~g--~l--yv~~--~~~~~v~~iD~~t---~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~-~~--------- 149 (328)
T 3dsm_A 91 FLSDE--KA--YVTQ--IWDYRIFIINPKT---YEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNC-WS--------- 149 (328)
T ss_dssp EEETT--EE--EEEE--BSCSEEEEEETTT---TEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEE-CT---------
T ss_pred EeCCC--eE--EEEE--CCCCeEEEEECCC---CeEEEEEEcCCccccCCCcceEEE--ECCEEEEEc-CC---------
Confidence 98874 22 2221 1246889999876 44444443322 02334555 455655431 10
Q ss_pred cceeEEEEeeCCcc-eeeeecCCCCCeEEEEECcCCCEEEEEEccC--------CCeEEEEecccceeE-Ee--C-CcCe
Q 013871 173 GESKLNYLTTDGTH-EGLVPLRKEGPVHDVQWSYSGSEFAVVYGFM--------PASATIFNKKCRPIL-EL--G-SGPY 239 (434)
Q Consensus 173 g~~~l~~l~~~~~~-~~~v~l~~~~~i~~v~wspdg~~~av~~g~~--------~~~v~l~d~~~~~~~-~~--~-~~~~ 239 (434)
....+..++..... ...+.+ ....+.++++|+|+.+++..+.. .+.|.++|.+...+. .+ . ....
T Consensus 150 ~~~~v~viD~~t~~~~~~i~~--g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p 227 (328)
T 3dsm_A 150 YQNRILKIDTETDKVVDELTI--GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWP 227 (328)
T ss_dssp TCCEEEEEETTTTEEEEEEEC--SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCC
T ss_pred CCCEEEEEECCCCeEEEEEEc--CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCc
Confidence 02246666654432 223333 33457899999998655432221 268999999754433 33 2 2357
Q ss_pred eEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEE--ee--CCCceEEEECCCCCEEEEEE----cCCceeeCCcEEE
Q 013871 240 NTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGT--TR--AECSVTSEWSPDGRYFMTAT----TAPRLQIDNGIKI 311 (434)
Q Consensus 240 ~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~--~~--~~~~~~~~wspdg~~l~tas----~~prl~~D~~i~i 311 (434)
+.++|+|+|++|.++. +.|.+||..+++.... +. ...+..++++|++..|.++. .. ++.|.+
T Consensus 228 ~~la~~~d~~~lyv~~-----~~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~-----~~~V~v 297 (328)
T 3dsm_A 228 SEVQLNGTRDTLYWIN-----NDIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQ-----QGIVYR 297 (328)
T ss_dssp EEEEECTTSCEEEEES-----SSEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSS-----EEEEEE
T ss_pred eeEEEecCCCEEEEEc-----cEEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEccccccc-----CCEEEE
Confidence 8999999999988875 2799999988765321 12 23456699999555555554 21 789999
Q ss_pred EeecCceeeeeecc
Q 013871 312 FHHNGSLFFKKMFD 325 (434)
Q Consensus 312 w~~~g~~~~~~~~~ 325 (434)
|+.+|+++......
T Consensus 298 ~d~~g~~~~~i~~G 311 (328)
T 3dsm_A 298 YSPQGKLIDEFYVG 311 (328)
T ss_dssp ECTTCCEEEEEEEE
T ss_pred ECCCCCEEEEEEec
Confidence 99999888766443
No 197
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.28 E-value=3.2e-09 Score=96.81 Aligned_cols=234 Identities=7% Similarity=-0.017 Sum_probs=136.9
Q ss_pred ceEEecCCCcEEE-EEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCC
Q 013871 3 LLLTCLRVGLIIQ-TFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFP 81 (434)
Q Consensus 3 ~~l~fSP~g~~L~-t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~ 81 (434)
.+|+++|+|+.++ +-. .++.|.+||..++.. ..+.... ......+++++||+++++..++.|.+|+.....
T Consensus 27 ~~i~~~~~g~l~v~~~~-----~~~~i~~~~~~~~~~-~~~~~~~--~~~p~~i~~~~~g~l~v~~~~~~i~~~d~~~~~ 98 (270)
T 1rwi_B 27 SGVAVDSAGNVYVTSEG-----MYGRVVKLATGSTGT-TVLPFNG--LYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNN 98 (270)
T ss_dssp EEEEECTTCCEEEEECS-----SSCEEEEECC------EECCCCS--CCSCCCEEECTTCCEEEEETTTEEEEECTTCSC
T ss_pred cceEECCCCCEEEEccC-----CCCcEEEecCCCccc-ceEeeCC--cCCcceeEECCCCCEEEEcCCCEEEEEeCCCce
Confidence 5789999999776 323 467899998765543 2222111 133447899999997776667799999976533
Q ss_pred Cceeee-eecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEE
Q 013871 82 KGILYR-LRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVA 160 (434)
Q Consensus 82 ~~~~~~-~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~ 160 (434)
. .... .....+..++++|++. .+ +.+ ...+.|.+|+... ................+.++++|+ +.+.
T Consensus 99 ~-~~~~~~~~~~p~~i~~~~~g~-l~---v~~--~~~~~i~~~~~~~---~~~~~~~~~~~~~p~~i~~~~~g~-l~v~- 166 (270)
T 1rwi_B 99 Q-TVLPFDGLNYPEGLAVDTQGA-VY---VAD--RGNNRVVKLAAGS---KTQTVLPFTGLNDPDGVAVDNSGN-VYVT- 166 (270)
T ss_dssp C-EECCCCSCSSEEEEEECTTCC-EE---EEE--GGGTEEEEECTTC---CSCEECCCCSCCSCCCEEECTTCC-EEEE-
T ss_pred E-eeeecCCcCCCcceEECCCCC-EE---EEE--CCCCEEEEEECCC---ceeEeeccccCCCceeEEEeCCCC-EEEE-
Confidence 2 1111 1234678899999743 22 211 1134667775432 221111111112345788899987 4332
Q ss_pred EecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeEEeC---Cc
Q 013871 161 QSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELG---SG 237 (434)
Q Consensus 161 ~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~~~---~~ 237 (434)
.. +...|+.++..+.............+..++++++|..++ +...++.|.+||..+....... ..
T Consensus 167 ~~----------~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v--~~~~~~~v~~~~~~~~~~~~~~~~~~~ 234 (270)
T 1rwi_B 167 DT----------DNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYV--TEHNTNQVVKLLAGSTTSTVLPFTGLN 234 (270)
T ss_dssp EG----------GGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEE--EETTTSCEEEECTTCSCCEECCCCSCS
T ss_pred EC----------CCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEE--EECCCCcEEEEcCCCCcceeeccCCCC
Confidence 21 112356666555432222222235678999999995444 4555678999998765544332 24
Q ss_pred CeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC
Q 013871 238 PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG 271 (434)
Q Consensus 238 ~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~ 271 (434)
....++++|+|+++++.. + ++.|.+++....
T Consensus 235 ~p~~i~~~~~g~l~v~~~-~--~~~v~~~~~~~~ 265 (270)
T 1rwi_B 235 TPLAVAVDSDRTVYVADR-G--NDRVVKLTSLEH 265 (270)
T ss_dssp CEEEEEECTTCCEEEEEG-G--GTEEEEECCCGG
T ss_pred CceeEEECCCCCEEEEEC-C--CCEEEEEcCCCc
Confidence 578899999998555544 2 369999987653
No 198
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.27 E-value=4e-09 Score=97.92 Aligned_cols=236 Identities=6% Similarity=-0.029 Sum_probs=140.8
Q ss_pred cceEEecCCCc-EEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCC
Q 013871 2 LLLLTCLRVGL-IIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTD 79 (434)
Q Consensus 2 V~~l~fSP~g~-~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~ 79 (434)
..++.|+|+|+ .+++.. .++.|.+||..++ +..+.... .....+.|++||+++++.. ++.|.+|+..+
T Consensus 30 ~eg~~~d~~g~~l~~~~~-----~~~~i~~~~~~~~--~~~~~~~~---~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~ 99 (296)
T 3e5z_A 30 TEGPVYVPARSAVIFSDV-----RQNRTWAWSDDGQ--LSPEMHPS---HHQNGHCLNKQGHLIACSHGLRRLERQREPG 99 (296)
T ss_dssp EEEEEEEGGGTEEEEEEG-----GGTEEEEEETTSC--EEEEESSC---SSEEEEEECTTCCEEEEETTTTEEEEECSTT
T ss_pred ccCCeEeCCCCEEEEEeC-----CCCEEEEEECCCC--eEEEECCC---CCcceeeECCCCcEEEEecCCCeEEEEcCCC
Confidence 35789999999 444433 4678999998877 55554432 3344789999999888775 47999999865
Q ss_pred CCCceeeee----ecCCeeEEEEeCCCCCeEEEEec-CC---------CCCCceEEEEEcCCCCCCCceeeeeeccccee
Q 013871 80 FPKGILYRL----RVPGVAAFEVSKAPGSHVAVFVP-ES---------KGSPASVQIYACGKDLQSQPLARRSFFRCSTV 145 (434)
Q Consensus 80 ~~~~~~~~~----~~~~v~~~~~sp~~~~~ia~~~~-~~---------~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~ 145 (434)
......... ....+.+++++|++ .+++.-.. .. ......-.||.+.. ...+...........
T Consensus 100 g~~~~~~~~~~~~~~~~~~~i~~d~~G-~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~---~g~~~~~~~~~~~~~ 175 (296)
T 3e5z_A 100 GEWESIADSFEGKKLNSPNDVCLAPDG-SLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAP---DGTLSAPIRDRVKPN 175 (296)
T ss_dssp CCEEEEECEETTEECCCCCCEEECTTS-CEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECT---TSCEEEEECCCSSEE
T ss_pred CcEEEEeeccCCCCCCCCCCEEECCCC-CEEEECCccccccccccccccccCCCcEEEEECC---CCCEEEeecCCCCCc
Confidence 432111111 12345678999985 33221000 00 00111225555543 222222222233446
Q ss_pred EEEECCCCCeEEEEEEecccccCceeecceeEEEEeeC--Ccc---eeeeecCCCCCeEEEEECcCCCEEEEEEccCCCe
Q 013871 146 QLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTD--GTH---EGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPAS 220 (434)
Q Consensus 146 ~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~--~~~---~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~ 220 (434)
.+.|+|+|+.+ +.. . .+ ..++.++.. +.. ...+ ....+.+..++++++|+.++. . .+.
T Consensus 176 gi~~s~dg~~l-v~~-~-~~---------~~i~~~~~~~~g~~~~~~~~~-~~~~~~p~~i~~d~~G~l~v~--~--~~~ 238 (296)
T 3e5z_A 176 GLAFLPSGNLL-VSD-T-GD---------NATHRYCLNARGETEYQGVHF-TVEPGKTDGLRVDAGGLIWAS--A--GDG 238 (296)
T ss_dssp EEEECTTSCEE-EEE-T-TT---------TEEEEEEECSSSCEEEEEEEE-CCSSSCCCSEEEBTTSCEEEE--E--TTE
T ss_pred cEEECCCCCEE-EEe-C-CC---------CeEEEEEECCCCcCcCCCeEe-eCCCCCCCeEEECCCCCEEEE--c--CCe
Confidence 78999999987 432 1 11 124444443 221 1111 112445678999999985552 3 679
Q ss_pred EEEEecccceeEEe--CCcCeeEEEE-CCCCCeEEEEecCCCCCeEEEEEccCCEE
Q 013871 221 ATIFNKKCRPILEL--GSGPYNTVRW-NPKGKFLCLAGFGNLPGDMAFWDYVDGKQ 273 (434)
Q Consensus 221 v~l~d~~~~~~~~~--~~~~~~~i~~-SP~g~~l~~~~~~~~~g~i~iwd~~~~~~ 273 (434)
|.+||.+++.+..+ +.. +++++| +|+|+.|.+++.+ .+.-++.++.++
T Consensus 239 v~~~~~~g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~----~l~~~~~~~~~~ 289 (296)
T 3e5z_A 239 VHVLTPDGDELGRVLTPQT-TSNLCFGGPEGRTLYMTVST----EFWSIETNVRGL 289 (296)
T ss_dssp EEEECTTSCEEEEEECSSC-CCEEEEESTTSCEEEEEETT----EEEEEECSCCBC
T ss_pred EEEECCCCCEEEEEECCCC-ceeEEEECCCCCEEEEEcCC----eEEEEEcccccc
Confidence 99999987766555 445 888999 6999988888732 577777776543
No 199
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.26 E-value=3e-09 Score=96.95 Aligned_cols=232 Identities=9% Similarity=0.026 Sum_probs=137.6
Q ss_pred eeeecCCCcEEE-Ee-cCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCC
Q 013871 54 SIRFSSDEAVAC-RM-ATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQS 131 (434)
Q Consensus 54 ~~~~S~d~~~la-~~-~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~ 131 (434)
.+.+++||++++ .. .++.|.+|+................+..++++|++.-.++ +. .+.|.+|+... .
T Consensus 28 ~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~----~~---~~~i~~~d~~~---~ 97 (270)
T 1rwi_B 28 GVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVT----DF---NNRVVTLAAGS---N 97 (270)
T ss_dssp EEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEE----ET---TTEEEEECTTC---S
T ss_pred ceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEE----cC---CCEEEEEeCCC---c
Confidence 788999999777 53 4579999987553221111112245778899987432222 11 35778887654 2
Q ss_pred Cceeeeeec-ccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEE
Q 013871 132 QPLARRSFF-RCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEF 210 (434)
Q Consensus 132 ~~i~~~~~~-~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~ 210 (434)
.+...... ......+.++++|. +++ +.. +...|+.++................+..++++|+|+.+
T Consensus 98 -~~~~~~~~~~~~p~~i~~~~~g~-l~v-~~~----------~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~ 164 (270)
T 1rwi_B 98 -NQTVLPFDGLNYPEGLAVDTQGA-VYV-ADR----------GNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVY 164 (270)
T ss_dssp -CCEECCCCSCSSEEEEEECTTCC-EEE-EEG----------GGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEE
T ss_pred -eEeeeecCCcCCCcceEECCCCC-EEE-EEC----------CCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEE
Confidence 22212111 13456788899887 333 221 11134555332221111111122356889999999844
Q ss_pred EEEEccCCCeEEEEecccceeEEe---CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEee-C-CCceEE
Q 013871 211 AVVYGFMPASATIFNKKCRPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTR-A-ECSVTS 285 (434)
Q Consensus 211 av~~g~~~~~v~l~d~~~~~~~~~---~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~-~-~~~~~~ 285 (434)
+ +....+.|.+||..+...... +......|+++|+|+++++.. + ++.|.+||........... + ..+..+
T Consensus 165 v--~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~-~--~~~v~~~~~~~~~~~~~~~~~~~~p~~i 239 (270)
T 1rwi_B 165 V--TDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEH-N--TNQVVKLLAGSTTSTVLPFTGLNTPLAV 239 (270)
T ss_dssp E--EEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEET-T--TSCEEEECTTCSCCEECCCCSCSCEEEE
T ss_pred E--EECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEEC-C--CCcEEEEcCCCCcceeeccCCCCCceeE
Confidence 4 344467999999876554433 225578899999996555443 2 3689999987654333222 2 246679
Q ss_pred EECCCCCEEEEEEcCCceeeCCcEEEEeecCcee
Q 013871 286 EWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLF 319 (434)
Q Consensus 286 ~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~~ 319 (434)
+++|+|+.+++... ++.|++++......
T Consensus 240 ~~~~~g~l~v~~~~------~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 240 AVDSDRTVYVADRG------NDRVVKLTSLEHHH 267 (270)
T ss_dssp EECTTCCEEEEEGG------GTEEEEECCCGGGS
T ss_pred EECCCCCEEEEECC------CCEEEEEcCCCccc
Confidence 99999997777666 89999999876543
No 200
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.25 E-value=1.1e-07 Score=91.93 Aligned_cols=280 Identities=11% Similarity=0.100 Sum_probs=166.1
Q ss_pred cCCCcEEEEEecCC---CCCCCcEEEEEcCC-----CcEEEEEeecC----cCCCCC------Ceeeec--CCCcEEEEe
Q 013871 8 LRVGLIIQTFQKSS---TPQEKNVILWKTET-----GEAVYQLFQKN----MTKTTW------PSIRFS--SDEAVACRM 67 (434)
Q Consensus 8 SP~g~~L~t~~~~~---~~~d~~v~iWd~~~-----g~~~~~~~~~~----~~~~~~------~~~~~S--~d~~~la~~ 67 (434)
.|..+++.+|.-+. +..-..|.+-|+.. |+.++...... .|...| .++.++ .++++|...
T Consensus 22 ~~~e~~~y~~~~~~~~~~~~~d~la~vDvdp~s~ty~~vi~~~~~p~~gde~HH~gwn~css~~~~~~~~~~~r~~l~v~ 101 (462)
T 2ece_A 22 APPEDLAYVACLYTGTGINRADFIAVVDVNPKSETYSKIVHKVELPYINDELHHFGWNACSSALCPNGKPNIERRFLIVP 101 (462)
T ss_dssp SCCCSEEEEEEECTTTTCCCCCEEEEEECCTTSTTTTSEEEEEECSSSCCCBCCCEESCCGGGGSTTCCTTCCSCEEEEE
T ss_pred CCcceEEEEEeeccCCCCCCCCeEEEEECCCCCCCcceEEEEEECCCCCCcccccchhhhhhhcccccCCCccCCEEEEc
Confidence 46778888777553 22335688889987 78888766532 122334 234458 889888876
Q ss_pred --cCCeEEEEeCCCC-CCcee-eeee---------cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCce
Q 013871 68 --ATNEIQFFDTTDF-PKGIL-YRLR---------VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPL 134 (434)
Q Consensus 68 --~~~~i~v~~~~~~-~~~~~-~~~~---------~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i 134 (434)
.++.|.|+|+... ..... ..+. ...-..+..+|++ -+|+..-...++.++.|.+++..+ .+.+
T Consensus 102 ~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T---~~v~ 177 (462)
T 2ece_A 102 GLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYS---FEPL 177 (462)
T ss_dssp BTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTT---CCEE
T ss_pred cCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCC---CeEE
Confidence 4579999998532 22122 2221 0123345778885 333333222345678999999887 5666
Q ss_pred eeeeecccc---eeEEEECCCCCeEEEEEEec-----------ccccCceeecceeEEEEeeCCc-ceeeeecCCC-CCe
Q 013871 135 ARRSFFRCS---TVQLNWNRGSTGLLAVAQSD-----------VDKTNQSYYGESKLNYLTTDGT-HEGLVPLRKE-GPV 198 (434)
Q Consensus 135 ~~~~~~~~~---~~~~~ws~~G~~l~~~~~~~-----------~d~~~~~~~g~~~l~~l~~~~~-~~~~v~l~~~-~~i 198 (434)
.+...-... -..+-|+|+++.++.. .-. .|... . + ...|+.++.... ....+.+... ...
T Consensus 178 ~~~~~~~~~~~~~Yd~~~~p~~~~mvsS-~wg~p~~~~~g~~~~~~~~-~-~-~d~V~v~D~~~~k~~~tI~vg~~g~~P 253 (462)
T 2ece_A 178 GKWEIDRGDQYLAYDFWWNLPNEVLVSS-EWAVPNTIEDGLKLEHLKD-R-Y-GNRIHFWDLRKRKRIHSLTLGEENRMA 253 (462)
T ss_dssp EECCSBCTTCCCCCCEEEETTTTEEEEC-BCCCHHHHTTCCCTTTHHH-H-S-CCEEEEEETTTTEEEEEEESCTTEEEE
T ss_pred EEEccCCCCccccceEEECCCCCEEEEc-cCcCccccccccchhhhhh-c-c-CCEEEEEECCCCcEeeEEecCCCCCcc
Confidence 555432111 3458899999964331 100 00000 1 1 234666666543 2334444322 223
Q ss_pred EEEEE--CcCCCEEEEEEcc-----CCCeEEEEecccc-----eeEEeC------------------CcCeeEEEECCCC
Q 013871 199 HDVQW--SYSGSEFAVVYGF-----MPASATIFNKKCR-----PILELG------------------SGPYNTVRWNPKG 248 (434)
Q Consensus 199 ~~v~w--spdg~~~av~~g~-----~~~~v~l~d~~~~-----~~~~~~------------------~~~~~~i~~SP~g 248 (434)
..+.| +|+|++..++ .. ..++|.+|..+.. ++.++. ......|.+||||
T Consensus 254 ~~i~f~~~Pdg~~aYV~-~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DG 332 (462)
T 2ece_A 254 LELRPLHDPTKLMGFIN-MVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDD 332 (462)
T ss_dssp EEEEECSSTTCCEEEEE-EEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTS
T ss_pred ceeEeeECCCCCEEEEE-EeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCC
Confidence 34545 9999988875 33 5567776543211 111111 1335679999999
Q ss_pred CeEEEEecCCCCCeEEEEEcc---CCEEEEEeeCC----------------CceEEEECCCCCEEEEEE
Q 013871 249 KFLCLAGFGNLPGDMAFWDYV---DGKQLGTTRAE----------------CSVTSEWSPDGRYFMTAT 298 (434)
Q Consensus 249 ~~l~~~~~~~~~g~i~iwd~~---~~~~i~~~~~~----------------~~~~~~wspdg~~l~tas 298 (434)
++|.++..+. +.|.+||+. +.+++..+... ....+++||||++|+++.
T Consensus 333 rfLYVSnrg~--d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 333 KFLYLSLWGI--GEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CEEEEEETTT--TEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred CEEEEEeCCC--CEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 9999998765 799999986 34666665443 245699999999999998
No 201
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.25 E-value=7e-08 Score=88.89 Aligned_cols=267 Identities=7% Similarity=-0.047 Sum_probs=156.6
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF 80 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~ 80 (434)
+.+|+++|+|+.+++.. .++.|.+||.. ++. ..+.... .......+.++++|.+.+... ++.|..|+...
T Consensus 17 ~~~i~~d~~g~l~v~~~-----~~~~v~~~d~~-~~~-~~~~~~~-~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g- 87 (299)
T 2z2n_A 17 PYGITVSDKGKVWITQH-----KANMISCINLD-GKI-TEYPLPT-PDAKVMCLTISSDGEVWFTENAANKIGRITKKG- 87 (299)
T ss_dssp EEEEEECTTSCEEEEET-----TTTEEEEECTT-CCE-EEEECSS-TTCCEEEEEECTTSCEEEEETTTTEEEEECTTS-
T ss_pred ccceEECCCCCEEEEec-----CCCcEEEEcCC-CCe-EEecCCc-ccCceeeEEECCCCCEEEeCCCCCeEEEECCCC-
Confidence 57899999999887644 46789999987 654 3333221 113445789999999887765 57899998752
Q ss_pred CCceeeee--ecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceee-eeecccceeEEEECCCCCeEE
Q 013871 81 PKGILYRL--RVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLAR-RSFFRCSTVQLNWNRGSTGLL 157 (434)
Q Consensus 81 ~~~~~~~~--~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~-~~~~~~~~~~~~ws~~G~~l~ 157 (434)
. .....+ ....+..+.++|++...++ .. ..+.|.+|+. + +..... ..........+.+.++|.. .
T Consensus 88 ~-~~~~~~~~~~~~~~~i~~~~~g~l~v~----~~--~~~~i~~~d~-~---g~~~~~~~~~~~~~~~~i~~~~~g~l-~ 155 (299)
T 2z2n_A 88 I-IKEYTLPNPDSAPYGITEGPNGDIWFT----EM--NGNRIGRITD-D---GKIREYELPNKGSYPSFITLGSDNAL-W 155 (299)
T ss_dssp C-EEEEECSSTTCCEEEEEECTTSCEEEE----ET--TTTEEEEECT-T---CCEEEEECSSTTCCEEEEEECTTSCE-E
T ss_pred c-EEEEeCCCcCCCceeeEECCCCCEEEE----ec--CCceEEEECC-C---CCEEEecCCCCCCCCceEEEcCCCCE-E
Confidence 1 111221 1235788888887422221 11 1346666665 3 221111 1111234567788888853 3
Q ss_pred EEEEecccccCceeecceeEEEEeeCCcceeeeecC-CCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeEEe--
Q 013871 158 AVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR-KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL-- 234 (434)
Q Consensus 158 ~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~-~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~~-- 234 (434)
+.. . +...|+.++..+. ...+.+. ....+..++++++|+.++ +....+.+.+||..+. +..+
T Consensus 156 v~~-~----------~~~~i~~~~~~g~-~~~~~~~~~~~~~~~i~~~~~g~l~v--~~~~~~~i~~~~~~g~-~~~~~~ 220 (299)
T 2z2n_A 156 FTE-N----------QNNAIGRITESGD-ITEFKIPTPASGPVGITKGNDDALWF--VEIIGNKIGRITTSGE-ITEFKI 220 (299)
T ss_dssp EEE-T----------TTTEEEEECTTCC-EEEEECSSTTCCEEEEEECTTSSEEE--EETTTTEEEEECTTCC-EEEEEC
T ss_pred EEe-C----------CCCEEEEEcCCCc-EEEeeCCCCCCcceeEEECCCCCEEE--EccCCceEEEECCCCc-EEEEEC
Confidence 221 1 1123566655332 2222222 234678999999988544 3445678999998433 3333
Q ss_pred --CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEE-eeC--CCceEEEECCCCCEEEEEEcCCceeeCCcE
Q 013871 235 --GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGT-TRA--ECSVTSEWSPDGRYFMTATTAPRLQIDNGI 309 (434)
Q Consensus 235 --~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~-~~~--~~~~~~~wspdg~~l~tas~~prl~~D~~i 309 (434)
+......++++|+|++++... + ++.|.+||. +++.... ... ..+..+.+ ++|+.+++. . .+++
T Consensus 221 ~~~~~~~~~i~~~~~g~l~v~~~-~--~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~-~~g~l~v~~-~------~~~l 288 (299)
T 2z2n_A 221 PTPNARPHAITAGAGIDLWFTEW-G--ANKIGRLTS-NNIIEEYPIQIKSAEPHGICF-DGETIWFAM-E------CDKI 288 (299)
T ss_dssp SSTTCCEEEEEECSTTCEEEEET-T--TTEEEEEET-TTEEEEEECSSSSCCEEEEEE-CSSCEEEEE-T------TTEE
T ss_pred CCCCCCceeEEECCCCCEEEecc-C--CceEEEECC-CCceEEEeCCCCCCccceEEe-cCCCEEEEe-c------CCcE
Confidence 235678899999999555432 2 368999998 4543322 222 25566888 888866654 3 5666
Q ss_pred EEEeecC
Q 013871 310 KIFHHNG 316 (434)
Q Consensus 310 ~iw~~~g 316 (434)
..++...
T Consensus 289 ~~~~~~~ 295 (299)
T 2z2n_A 289 GKLTLIK 295 (299)
T ss_dssp EEEEEC-
T ss_pred EEEEcCc
Confidence 6666543
No 202
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.24 E-value=3.3e-09 Score=103.40 Aligned_cols=261 Identities=10% Similarity=0.046 Sum_probs=149.7
Q ss_pred eEEecCCCcEEEEEecCC-----CCCCCcEEEEEcCCCcEEEEEeec-Cc---CCCCCCeeeecCCCcEEEEec---CCe
Q 013871 4 LLTCLRVGLIIQTFQKSS-----TPQEKNVILWKTETGEAVYQLFQK-NM---TKTTWPSIRFSSDEAVACRMA---TNE 71 (434)
Q Consensus 4 ~l~fSP~g~~L~t~~~~~-----~~~d~~v~iWd~~~g~~~~~~~~~-~~---~~~~~~~~~~S~d~~~la~~~---~~~ 71 (434)
.|.|||||++|....... +..++.|.++|..+++.+.++... .. ....-..+.|||||+++.... ++.
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~ 201 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPA 201 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCE
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCe
Confidence 588999999998765210 113568999999999998887642 00 001122689999999888763 479
Q ss_pred EEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeee-eecccc----eeE
Q 013871 72 IQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARR-SFFRCS----TVQ 146 (434)
Q Consensus 72 i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~-~~~~~~----~~~ 146 (434)
|.++|+.... ...++...+. ..+.|++...+..+.+ ++.+.+.++.. ++..... ..+... ...
T Consensus 202 VsVID~~t~k--vv~~I~v~g~--~~~~p~g~~~~v~~~~-----dG~~~~V~~~~---~~v~~~~~~~~~v~~~p~~~~ 269 (426)
T 3c75_H 202 VGVVDLEGKT--FDRMLDVPDC--YHIFPASPTVFYMNCR-----DGSLARVDFAD---GETKVTNTEVFHTEDELLINH 269 (426)
T ss_dssp EEEEETTTTE--EEEEEECCSE--EEEEEEETTEEEEEET-----TSSEEEEECCT---TCCEEEECCCCSCTTSCBCSC
T ss_pred EEEEECCCCe--EEEEEEcCCc--eeeccCCCcEEEEEcC-----CCCEEEEECCC---CcEEEEeeeeeccCCCceeeE
Confidence 9999998754 3344555443 2233332222222221 12233333322 2221110 011100 123
Q ss_pred EEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceee---eecC---------CCCCeEEEEECcCCCEEEEEE
Q 013871 147 LNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGL---VPLR---------KEGPVHDVQWSYSGSEFAVVY 214 (434)
Q Consensus 147 ~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~---v~l~---------~~~~i~~v~wspdg~~~av~~ 214 (434)
+.+.++|..+++... .+ .++.++..+..... +.+. .......++++||++++.+..
T Consensus 270 ~~~~~dg~~~~~~s~-----~g-------~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~ 337 (426)
T 3c75_H 270 PAFSLRSGRLVWPTY-----TG-------KIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLV 337 (426)
T ss_dssp CEECTTTCEEEEEBT-----TS-------EEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEE
T ss_pred eeecCCCCEEEEEeC-----CC-------cEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEe
Confidence 456888888766421 11 35666554332111 1110 012233479999999888753
Q ss_pred ccC--------CCeEEEEecccc-eeEEeCC-cCeeEEEECCCCC-eEEEEecCCCCCeEEEEEccCCEEEEEe-eCCCc
Q 013871 215 GFM--------PASATIFNKKCR-PILELGS-GPYNTVRWNPKGK-FLCLAGFGNLPGDMAFWDYVDGKQLGTT-RAECS 282 (434)
Q Consensus 215 g~~--------~~~v~l~d~~~~-~~~~~~~-~~~~~i~~SP~g~-~l~~~~~~~~~g~i~iwd~~~~~~i~~~-~~~~~ 282 (434)
... .+.|.++|++.. .+..+.. ..-..|.|+|||+ +++++..+ ++.|.++|+.+++.+.++ .-...
T Consensus 338 ~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~P~gia~spDg~~~lyv~n~~--s~~VsVID~~t~kvv~tI~~vG~~ 415 (426)
T 3c75_H 338 DQRDEWKHKAASRFVVVLNAETGERINKIELGHEIDSINVSQDAEPLLYALSAG--TQTLHIYDAATGEELRSVDQLGRG 415 (426)
T ss_dssp EECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETT--TTEEEEEETTTCCEEEEECCCSSS
T ss_pred cccccccccCCCCEEEEEECCCCeEEEEEECCCCcCeEEEccCCCEEEEEEcCC--CCeEEEEECCCCCEEEEecCCCCC
Confidence 321 247999999754 4445532 2367899999999 78777643 379999999999999886 32222
Q ss_pred eEEEECCC
Q 013871 283 VTSEWSPD 290 (434)
Q Consensus 283 ~~~~wspd 290 (434)
-.+..+||
T Consensus 416 P~~i~~~~ 423 (426)
T 3c75_H 416 PQIITTHD 423 (426)
T ss_dssp CCEEECCC
T ss_pred CcEEEcCC
Confidence 23555555
No 203
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.23 E-value=2.5e-09 Score=101.17 Aligned_cols=240 Identities=10% Similarity=0.030 Sum_probs=144.0
Q ss_pred CCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCCCCceeeeeecC-------CeeE
Q 013871 24 QEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDFPKGILYRLRVP-------GVAA 95 (434)
Q Consensus 24 ~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~~~~~~~~~~~~-------~v~~ 95 (434)
.++.|.+||..+++.+.++... .....+++++|+++.++. .++.|.+||..+... ...+... ....
T Consensus 62 ~~~~v~viD~~t~~~~~~i~~~----~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~--~~~i~~g~~~~~~~~p~~ 135 (328)
T 3dsm_A 62 NSHVIFAIDINTFKEVGRITGF----TSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEI--TGYIECPDMDMESGSTEQ 135 (328)
T ss_dssp GGTEEEEEETTTCCEEEEEECC----SSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEE--EEEEECTTCCTTTCBCCC
T ss_pred CCCEEEEEECcccEEEEEcCCC----CCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeE--EEEEEcCCccccCCCcce
Confidence 3578999999999998888533 233378999999766665 578999999877432 2223221 3445
Q ss_pred EEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeec-c
Q 013871 96 FEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYG-E 174 (434)
Q Consensus 96 ~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g-~ 174 (434)
+++ .+ + .+-+ .. .+..+.|.++++.+ .+.+...... .....+.++++|+ +++.+..+.+. ..|.+ .
T Consensus 136 i~~-~~-~-~lyv--~~-~~~~~~v~viD~~t---~~~~~~i~~g-~~p~~i~~~~dG~-l~v~~~~~~~~--~~~~~~~ 202 (328)
T 3dsm_A 136 MVQ-YG-K-YVYV--NC-WSYQNRILKIDTET---DKVVDELTIG-IQPTSLVMDKYNK-MWTITDGGYEG--SPYGYEA 202 (328)
T ss_dssp EEE-ET-T-EEEE--EE-CTTCCEEEEEETTT---TEEEEEEECS-SCBCCCEECTTSE-EEEEBCCBCTT--CSSCBCC
T ss_pred EEE-EC-C-EEEE--Ec-CCCCCEEEEEECCC---CeEEEEEEcC-CCccceEEcCCCC-EEEEECCCccC--CccccCC
Confidence 556 22 2 2211 11 12356899999877 5555544432 2345678899987 33332211110 00100 1
Q ss_pred eeEEEEeeCCcce-eeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeEE--e-C--CcCeeEEEECCCC
Q 013871 175 SKLNYLTTDGTHE-GLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILE--L-G--SGPYNTVRWNPKG 248 (434)
Q Consensus 175 ~~l~~l~~~~~~~-~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~--~-~--~~~~~~i~~SP~g 248 (434)
..|+.++...... ..+.+......+.++|+|+++.+.++ .. .+.+||.....+.. + . ......++++|++
T Consensus 203 ~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~-~~---~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~ 278 (328)
T 3dsm_A 203 PSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWI-NN---DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNN 278 (328)
T ss_dssp CEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEE-SS---SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTT
T ss_pred ceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEE-cc---EEEEEECCCCceeeeeeecCCCCceEEEEEcCCC
Confidence 3577777654322 23444323467899999999988864 22 89999987544321 1 1 2456789999966
Q ss_pred CeEEEEecC--CCCCeEEEEEccCCEEEEEeeCC-CceEEEE
Q 013871 249 KFLCLAGFG--NLPGDMAFWDYVDGKQLGTTRAE-CSVTSEW 287 (434)
Q Consensus 249 ~~l~~~~~~--~~~g~i~iwd~~~~~~i~~~~~~-~~~~~~w 287 (434)
..|.++... ..++.|.+||.+ ++.+..+... .+..++|
T Consensus 279 g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~G~~P~~~~~ 319 (328)
T 3dsm_A 279 GEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYVGIIPGAFCW 319 (328)
T ss_dssp CCEEEEECTTSSSEEEEEEECTT-CCEEEEEEEEESEEEEEE
T ss_pred CeEEEEcccccccCCEEEEECCC-CCEEEEEEeccCcceEEE
Confidence 655555511 024799999998 8777766532 3333443
No 204
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.15 E-value=7.5e-08 Score=89.48 Aligned_cols=225 Identities=12% Similarity=0.083 Sum_probs=136.1
Q ss_pred eeeecCCCcEEEEe--cCCeEEEEeCCCCCCceeeeee-cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCC
Q 013871 54 SIRFSSDEAVACRM--ATNEIQFFDTTDFPKGILYRLR-VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQ 130 (434)
Q Consensus 54 ~~~~S~d~~~la~~--~~~~i~v~~~~~~~~~~~~~~~-~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~ 130 (434)
.+.|++++..|... .++.|+.|+...... .... ...+..+.++|++. +++. . ...|.+|+..+
T Consensus 17 gp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~---~~~~~~~~~~~i~~~~dG~-l~v~-~------~~~l~~~d~~~--- 82 (297)
T 3g4e_A 17 SPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV---QRVTMDAPVSSVALRQSGG-YVAT-I------GTKFCALNWKE--- 82 (297)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTCCE---EEEECSSCEEEEEEBTTSS-EEEE-E------TTEEEEEETTT---
T ss_pred CCeEECCCCEEEEEECCCCEEEEEECCCCcE---EEEeCCCceEEEEECCCCC-EEEE-E------CCeEEEEECCC---
Confidence 68999976655444 457999999876332 2222 34688899999854 3332 1 23677777654
Q ss_pred CCceeeeeec----ccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcC
Q 013871 131 SQPLARRSFF----RCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYS 206 (434)
Q Consensus 131 ~~~i~~~~~~----~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspd 206 (434)
++........ ......+.++++|. +.+..................||.++..+.... + .......+.++|+||
T Consensus 83 g~~~~~~~~~~~~~~~~~~di~~d~dG~-l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~-~-~~~~~~pngi~~spd 159 (297)
T 3g4e_A 83 QSAVVLATVDNDKKNNRFNDGKVDPAGR-YFAGTMAEETAPAVLERHQGALYSLFPDHHVKK-Y-FDQVDISNGLDWSLD 159 (297)
T ss_dssp TEEEEEEECCTTCSSEEEEEEEECTTSC-EEEEEEECCSBTTBCCTTCEEEEEECTTSCEEE-E-EEEESBEEEEEECTT
T ss_pred CcEEEEEecCCCCCCCCCCCEEECCCCC-EEEecCCcccccccccCCCcEEEEEECCCCEEE-E-eeccccccceEEcCC
Confidence 2211111110 12245688999998 333322111000000012235777765543211 1 111234578999999
Q ss_pred CCEEEEEEccCCCeEEEEecc--cc------eeEEeC--CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEE
Q 013871 207 GSEFAVVYGFMPASATIFNKK--CR------PILELG--SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGT 276 (434)
Q Consensus 207 g~~~av~~g~~~~~v~l~d~~--~~------~~~~~~--~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~ 276 (434)
++.++++ ....+.|.+||+. .. .+..+. .+....+++.++|++.+.... .+.|..||.++++.+..
T Consensus 160 g~~lyv~-~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~---~~~v~~~d~~tG~~~~~ 235 (297)
T 3g4e_A 160 HKIFYYI-DSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYN---GGRVIRLDPVTGKRLQT 235 (297)
T ss_dssp SCEEEEE-EGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEET---TTEEEEECTTTCCEEEE
T ss_pred CCEEEEe-cCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcC---CCEEEEEcCCCceEEEE
Confidence 9988764 5556799999863 21 122332 245578999999986665542 25899999998988887
Q ss_pred eeCC--CceEEEEC-CCCCEEEEEEc
Q 013871 277 TRAE--CSVTSEWS-PDGRYFMTATT 299 (434)
Q Consensus 277 ~~~~--~~~~~~ws-pdg~~l~tas~ 299 (434)
+..+ .++.|+|+ ||++.|..++.
T Consensus 236 i~~p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 236 VKLPVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp EECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred EECCCCCceEEEEeCCCCCEEEEEcC
Confidence 7665 67779998 99998887776
No 205
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.14 E-value=5.6e-08 Score=89.43 Aligned_cols=219 Identities=11% Similarity=0.103 Sum_probs=135.5
Q ss_pred cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeee------cccceeEEEE-CCCCCeEEEEEEe
Q 013871 90 VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSF------FRCSTVQLNW-NRGSTGLLAVAQS 162 (434)
Q Consensus 90 ~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~------~~~~~~~~~w-s~~G~~l~~~~~~ 162 (434)
+.....++++|++ ..+.. + ...+.|.+|+... ..+..... +......+.+ .++|. |++.. .
T Consensus 29 ~~~p~~v~~~~~g-~l~v~---~--~~~~~i~~~d~~g----~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~-l~v~~-~ 96 (286)
T 1q7f_A 29 FTEPSGVAVNAQN-DIIVA---D--TNNHRIQIFDKEG----RFKFQFGECGKRDSQLLYPNRVAVVRNSGD-IIVTE-R 96 (286)
T ss_dssp BSCEEEEEECTTC-CEEEE---E--GGGTEEEEECTTS----CEEEEECCBSSSTTCBSSEEEEEEETTTTE-EEEEE-C
T ss_pred cCCCceEEECCCC-CEEEE---E--CCCCEEEEECCCC----cEEEEecccCCCcccccCceEEEEEcCCCe-EEEEc-C
Confidence 4457788888874 32221 1 1235678887542 22222211 1124557777 45554 43321 1
Q ss_pred cccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeEEeC----CcC
Q 013871 163 DVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELG----SGP 238 (434)
Q Consensus 163 ~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~~~----~~~ 238 (434)
. +...++.++..+.....+.......+++++++|+|+.++ +...++.|.+||..+..+..+. ...
T Consensus 97 ~---------~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v--~~~~~~~i~~~~~~g~~~~~~~~~~~~~~ 165 (286)
T 1q7f_A 97 S---------PTHQIQIYNQYGQFVRKFGATILQHPRGVTVDNKGRIIV--VECKVMRVIIFDQNGNVLHKFGCSKHLEF 165 (286)
T ss_dssp G---------GGCEEEEECTTSCEEEEECTTTCSCEEEEEECTTSCEEE--EETTTTEEEEECTTSCEEEEEECTTTCSS
T ss_pred C---------CCCEEEEECCCCcEEEEecCccCCCceEEEEeCCCCEEE--EECCCCEEEEEcCCCCEEEEeCCCCccCC
Confidence 0 112355555444322223223345689999999997554 4555679999998877666652 245
Q ss_pred eeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC----CceEEEECCCCCEEEEEEcCCceeeCC-cEEEEe
Q 013871 239 YNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE----CSVTSEWSPDGRYFMTATTAPRLQIDN-GIKIFH 313 (434)
Q Consensus 239 ~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~----~~~~~~wspdg~~l~tas~~prl~~D~-~i~iw~ 313 (434)
.+.|+++|+|+++++.. .++.|.+||.. ++.+..+... .+..++++|+|+.+++... ++ .|.+|+
T Consensus 166 p~~i~~~~~g~l~v~~~---~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~------~~~~i~~~~ 235 (286)
T 1q7f_A 166 PNGVVVNDKQEIFISDN---RAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNH------NNFNLTIFT 235 (286)
T ss_dssp EEEEEECSSSEEEEEEG---GGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECS------SSCEEEEEC
T ss_pred cEEEEECCCCCEEEEEC---CCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCC------CCEEEEEEC
Confidence 78999999999666554 23699999974 4555555432 4566999999988877766 66 999999
Q ss_pred ecCceeeeeec----ccceeeEEEcCCCCCCC
Q 013871 314 HNGSLFFKKMF----DKLFQAEWKPVSPDKFG 341 (434)
Q Consensus 314 ~~g~~~~~~~~----~~~~~~~w~p~~~~~~~ 341 (434)
.+|+.+..... .....+++.|++..++.
T Consensus 236 ~~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs 267 (286)
T 1q7f_A 236 QDGQLISALESKVKHAQCFDVALMDDGSVVLA 267 (286)
T ss_dssp TTSCEEEEEEESSCCSCEEEEEEETTTEEEEE
T ss_pred CCCCEEEEEcccCCCCcceeEEECCCCcEEEE
Confidence 99987655432 23568899998753333
No 206
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.14 E-value=5e-08 Score=90.85 Aligned_cols=244 Identities=9% Similarity=0.029 Sum_probs=138.3
Q ss_pred cceEEecCCCcEEEE-------EecCCCCCCCcEEEEEcCCCcEEEEEeec--CcCCCCCCeeeecCC-CcEEEEecCCe
Q 013871 2 LLLLTCLRVGLIIQT-------FQKSSTPQEKNVILWKTETGEAVYQLFQK--NMTKTTWPSIRFSSD-EAVACRMATNE 71 (434)
Q Consensus 2 V~~l~fSP~g~~L~t-------~~~~~~~~d~~v~iWd~~~g~~~~~~~~~--~~~~~~~~~~~~S~d-~~~la~~~~~~ 71 (434)
..+++|+|+|+.+++ .. .++.|.+||..+++.. .+... ..+......+.+++| +++++....+.
T Consensus 20 ~~~~~~~~~g~l~~~~~~~~~~~~-----~~~~i~~~d~~~g~~~-~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~ 93 (314)
T 1pjx_A 20 AEGPVFDKNGDFYIVAPEVEVNGK-----PAGEILRIDLKTGKKT-VICKPEVNGYGGIPAGCQCDRDANQLFVADMRLG 93 (314)
T ss_dssp CEEEEECTTSCEEEEETTCEETTE-----ECCEEEEECTTTCCEE-EEECCEETTEECCEEEEEECSSSSEEEEEETTTE
T ss_pred ccCceECCCCCEEEEEeccccCCC-----CCCEEEEEeCCCCcEE-EEEecccCCCCCCCceEEEecCCCcEEEEECCCC
Confidence 357899999988877 23 4678999998888753 33220 001123447899999 88777666668
Q ss_pred EEEEeCCCCCCcee-ee----eecCCeeEEEEeCCCCCeEEEEecCC-------CCCCceEEEEEcCCCCCCCceeeeee
Q 013871 72 IQFFDTTDFPKGIL-YR----LRVPGVAAFEVSKAPGSHVAVFVPES-------KGSPASVQIYACGKDLQSQPLARRSF 139 (434)
Q Consensus 72 i~v~~~~~~~~~~~-~~----~~~~~v~~~~~sp~~~~~ia~~~~~~-------~~~~~~v~i~~~~~~~~~~~i~~~~~ 139 (434)
|.+|+.. ...... .. .....+..+.++|++...++...... ........||.+... ++ +.....
T Consensus 94 l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--g~-~~~~~~ 169 (314)
T 1pjx_A 94 LLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD--GQ-MIQVDT 169 (314)
T ss_dssp EEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT--SC-EEEEEE
T ss_pred EEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC--CC-EEEecc
Confidence 9999986 322111 11 11224778999998532222111000 000112344544321 22 211111
Q ss_pred cccceeEEEEC----CCCCeEEEEEEecccccCceeecceeEEEEeeC--Ccc---eeeeecCCC--CCeEEEEECcCCC
Q 013871 140 FRCSTVQLNWN----RGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTD--GTH---EGLVPLRKE--GPVHDVQWSYSGS 208 (434)
Q Consensus 140 ~~~~~~~~~ws----~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~--~~~---~~~v~l~~~--~~i~~v~wspdg~ 208 (434)
.......+.|+ ++|+.|++.... + ..|+.++.. +.. .....+... +....++++++|+
T Consensus 170 ~~~~~~~i~~~~~~d~dg~~l~v~~~~--~---------~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~ 238 (314)
T 1pjx_A 170 AFQFPNGIAVRHMNDGRPYQLIVAETP--T---------KKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNN 238 (314)
T ss_dssp EESSEEEEEEEECTTSCEEEEEEEETT--T---------TEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCC
T ss_pred CCCCcceEEEecccCCCCCEEEEEECC--C---------CeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCC
Confidence 12234578899 998876553211 1 123333322 110 011122211 4578899999997
Q ss_pred EEEEEEccCCCeEEEEecc-cceeEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccC
Q 013871 209 EFAVVYGFMPASATIFNKK-CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD 270 (434)
Q Consensus 209 ~~av~~g~~~~~v~l~d~~-~~~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~ 270 (434)
.++ +...++.|.+||.+ +..+..+ +...+.+++|+|+|+.|.+++.+ ++.|..|++..
T Consensus 239 l~v--~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~--~~~l~~~~~~~ 299 (314)
T 1pjx_A 239 LLV--ANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHE--NNAVWKFEWQR 299 (314)
T ss_dssp EEE--EEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETT--TTEEEEEECSS
T ss_pred EEE--EEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCC--CCeEEEEeCCC
Confidence 666 34446799999987 5444333 45678899999999977776643 36899999764
No 207
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.12 E-value=1e-07 Score=93.04 Aligned_cols=228 Identities=10% Similarity=0.077 Sum_probs=130.7
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC-C--eEEEEeCC
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT-N--EIQFFDTT 78 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~-~--~i~v~~~~ 78 (434)
...|+|+|+|+.+++-. .++.|++||..++.... +.... ... +++|++++++|+.... + .|.+|+..
T Consensus 133 P~~la~d~~g~lyv~d~-----~~~~I~~id~~~g~~~~-~~~~~---~~~-~ia~~~~g~~l~~~d~~~~~~I~~~d~~ 202 (409)
T 3hrp_A 133 MWGIAAVGNNTVLAYQR-----DDPRVRLISVDDNKVTT-VHPGF---KGG-KPAVTKDKQRVYSIGWEGTHTVYVYMKA 202 (409)
T ss_dssp EEEEEECSTTEEEEEET-----TTTEEEEEETTTTEEEE-EEETC---CBC-BCEECTTSSEEEEEBSSTTCEEEEEEGG
T ss_pred ceEEEEeCCCCEEEEec-----CCCcEEEEECCCCEEEE-eeccC---CCC-ceeEecCCCcEEEEecCCCceEEEEEcC
Confidence 35799999999666544 46789999998776543 33321 222 4899999998776643 2 78888865
Q ss_pred CCCCceeeee------ecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCC
Q 013871 79 DFPKGILYRL------RVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRG 152 (434)
Q Consensus 79 ~~~~~~~~~~------~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~ 152 (434)
..... ..+ ....+.+++++| +
T Consensus 203 ~~~~~--~~~g~~~~~~~~~p~~iav~p---------------------------------------------------~ 229 (409)
T 3hrp_A 203 SGWAP--TRIGQLGSTFSGKIGAVALDE---------------------------------------------------T 229 (409)
T ss_dssp GTTCE--EEEEECCTTSCSCCCBCEECT---------------------------------------------------T
T ss_pred CCcee--EEeeeccchhcCCcEEEEEeC---------------------------------------------------C
Confidence 42211 111 112233334443 2
Q ss_pred CCeEEEEEEecccccCceeecceeEEEEeeCCcceeee----ecCCCC--CeEEEEECcCCCEEEEEEccCCCeEEEEec
Q 013871 153 STGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLV----PLRKEG--PVHDVQWSYSGSEFAVVYGFMPASATIFNK 226 (434)
Q Consensus 153 G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v----~l~~~~--~i~~v~wspdg~~~av~~g~~~~~v~l~d~ 226 (434)
+..|++ + +. .+ .++.++..+.....+ .....+ |.+.++|+|++..+.+ +....+.|..||.
T Consensus 230 ~g~lyv-~--d~--~~-------~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv-~d~~~~~I~~~~~ 296 (409)
T 3hrp_A 230 EEWLYF-V--DS--NK-------NFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYM-SDQNLSSVYKITP 296 (409)
T ss_dssp SSEEEE-E--CT--TC-------EEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEE-EETTTTEEEEECT
T ss_pred CCeEEE-E--EC--CC-------cEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEE-EeCCCCEEEEEec
Confidence 222222 1 00 00 122222221111111 000111 2239999997666665 4556779999998
Q ss_pred ccceeEEeCC----------------cCeeEEEECCCCCeEEEEec-CCCCCeEEEEEccCCEEEEEeeC----------
Q 013871 227 KCRPILELGS----------------GPYNTVRWNPKGKFLCLAGF-GNLPGDMAFWDYVDGKQLGTTRA---------- 279 (434)
Q Consensus 227 ~~~~~~~~~~----------------~~~~~i~~SP~g~~l~~~~~-~~~~g~i~iwd~~~~~~i~~~~~---------- 279 (434)
.+......+. ..-+.++++|+|+ |.++.. ++ +.|+.||..+++.......
T Consensus 297 ~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~-lyvad~~~~--~~I~~~~~~~G~v~~~~g~~~~~g~~~g~ 373 (409)
T 3hrp_A 297 DGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGN-FYIVDGFKG--YCLRKLDILDGYVSTVAGQVDVASQIDGT 373 (409)
T ss_dssp TCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCC-EEEEETTTT--CEEEEEETTTTEEEEEEECTTCBSCCCBS
T ss_pred CCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCC-EEEEeCCCC--CEEEEEECCCCEEEEEeCCCCCCCcCCCC
Confidence 7653322221 2356899999999 445554 44 6999999888865433322
Q ss_pred ------CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEee
Q 013871 280 ------ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH 314 (434)
Q Consensus 280 ------~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~ 314 (434)
..+..++++|+|..+++-.. ++.|+.+++
T Consensus 374 ~~~~~~~~P~giavd~~g~lyVad~~------n~~Ir~i~~ 408 (409)
T 3hrp_A 374 PLEATFNYPYDICYDGEGGYWIAEAW------GKAIRKYAV 408 (409)
T ss_dssp TTTCCBSSEEEEEECSSSEEEEEEST------TCEEEEEEE
T ss_pred hhceEeCCceEEEEcCCCCEEEEECC------CCeEEEEEe
Confidence 13556999999876666555 677777654
No 208
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.10 E-value=9.2e-07 Score=81.31 Aligned_cols=255 Identities=8% Similarity=0.019 Sum_probs=148.6
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF 80 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~ 80 (434)
+.+|.++++|+..++.. .++.|.+||.. ++... +.... .......+.+.+++.+.+... ++.|.+|+.. .
T Consensus 22 p~~i~~d~~g~l~v~~~-----~~~~v~~~~~~-~~~~~-~~~~~-~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g 92 (300)
T 2qc5_A 22 PYGITSSEDGKVWFTQH-----KANKISSLDQS-GRIKE-FEVPT-PDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-G 92 (300)
T ss_dssp EEEEEECTTSCEEEEET-----TTTEEEEECTT-SCEEE-EECSS-TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred cceeeECCCCCEEEEcC-----CCCeEEEECCC-CceEE-EECCC-CCCcceeEEECCCCCEEEEecCCCeEEEECCC-C
Confidence 46789999999887654 46789999987 65433 33221 113344788999998777664 5789999876 2
Q ss_pred CCceeeeee--cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeee--cccceeEEEECCCCCeE
Q 013871 81 PKGILYRLR--VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSF--FRCSTVQLNWNRGSTGL 156 (434)
Q Consensus 81 ~~~~~~~~~--~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~--~~~~~~~~~ws~~G~~l 156 (434)
.. ....+. ...+..+++.+++...++ .. ..+.|..++... . +..... .......+.+.++|+ |
T Consensus 93 ~~-~~~~~~~~~~~~~~i~~~~~g~l~v~----~~--~~~~i~~~~~~g----~-~~~~~~~~~~~~~~~i~~d~~g~-l 159 (300)
T 2qc5_A 93 GF-TEYPLPQPDSGPYGITEGLNGDIWFT----QL--NGDRIGKLTADG----T-IYEYDLPNKGSYPAFITLGSDNA-L 159 (300)
T ss_dssp CE-EEEECSSTTCCEEEEEECSTTCEEEE----ET--TTTEEEEECTTS----C-EEEEECSSTTCCEEEEEECTTSS-E
T ss_pred Ce-EEecCCCCCCCCccceECCCCCEEEE----cc--CCCeEEEECCCC----C-EEEccCCCCCCCceeEEECCCCC-E
Confidence 21 212221 245778888887432222 11 123555555431 1 111111 123456778888887 3
Q ss_pred EEEEEecccccCceeecceeEEEEeeCCcceeeeecC-CCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeEE-e
Q 013871 157 LAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR-KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILE-L 234 (434)
Q Consensus 157 ~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~-~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~-~ 234 (434)
.+. .. +...|+.++..+.. ..+.+. ....+..+++.++|+.++ +....+.|.+||..+..... +
T Consensus 160 ~v~-~~----------~~~~i~~~~~~g~~-~~~~~~~~~~~~~~i~~d~~g~l~v--~~~~~~~i~~~~~~g~~~~~~~ 225 (300)
T 2qc5_A 160 WFT-EN----------QNNSIGRITNTGKL-EEYPLPTNAAAPVGITSGNDGALWF--VEIMGNKIGRITTTGEISEYDI 225 (300)
T ss_dssp EEE-ET----------TTTEEEEECTTCCE-EEEECSSTTCCEEEEEECTTSSEEE--EETTTTEEEEECTTCCEEEEEC
T ss_pred EEE-ec----------CCCeEEEECCCCcE-EEeeCCCCCCCcceEEECCCCCEEE--EccCCCEEEEEcCCCcEEEEEC
Confidence 332 11 11135555553332 223332 234678999999986555 34445689999985443322 2
Q ss_pred --CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEE-Eee--CCCceEEEECCCCCEEEE
Q 013871 235 --GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLG-TTR--AECSVTSEWSPDGRYFMT 296 (434)
Q Consensus 235 --~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~-~~~--~~~~~~~~wspdg~~l~t 296 (434)
+......++++|+|++.++. .+ ++.|..||.. ++... ... ...+..+..+++|+.+++
T Consensus 226 ~~~~~~~~~i~~d~~g~l~v~~-~~--~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~ 288 (300)
T 2qc5_A 226 PTPNARPHAITAGKNSEIWFTE-WG--ANQIGRITND-NTIQEYQLQTENAEPHGITFGKDGSVWFA 288 (300)
T ss_dssp SSTTCCEEEEEECSTTCEEEEE-TT--TTEEEEECTT-SCEEEEECCSTTCCCCCEEECTTSCEEEE
T ss_pred CCCCCCceEEEECCCCCEEEec-cC--CCeEEEECCC-CcEEEEECCccCCccceeEeCCCCCEEEE
Confidence 23456789999999855544 32 3689999984 43322 122 124556899999985443
No 209
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.07 E-value=1.5e-08 Score=97.09 Aligned_cols=256 Identities=8% Similarity=-0.028 Sum_probs=139.8
Q ss_pred eEEecCCCcEEEEEecCC-----CCCCCcEEEEEcCCCcEEEEEeecCcC----CCCCCeeeecCCCcEEEEec---CCe
Q 013871 4 LLTCLRVGLIIQTFQKSS-----TPQEKNVILWKTETGEAVYQLFQKNMT----KTTWPSIRFSSDEAVACRMA---TNE 71 (434)
Q Consensus 4 ~l~fSP~g~~L~t~~~~~-----~~~d~~v~iWd~~~g~~~~~~~~~~~~----~~~~~~~~~S~d~~~la~~~---~~~ 71 (434)
.+.|||||++|....... +..++.|.+||+.+++.+.++...... ...-..+++||||++++.+. ++.
T Consensus 69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~ 148 (368)
T 1mda_H 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA 148 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCe
Confidence 589999999999876311 123578999999999999998653100 01223789999999888763 357
Q ss_pred EEE--EeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCC----CCCCCceeee-eecccce
Q 013871 72 IQF--FDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGK----DLQSQPLARR-SFFRCST 144 (434)
Q Consensus 72 i~v--~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~----~~~~~~i~~~-~~~~~~~ 144 (434)
|.+ +|... ...+...+. +.+.|++...... ...++.+.+.++.. . ++.+... .+.....
T Consensus 149 v~V~~iD~~t-----v~~i~v~~~--~~~~p~g~~~~~~-----~~~dg~~~~vd~~~~~~~~--~~v~~~~t~~i~vg~ 214 (368)
T 1mda_H 149 AGLSVPGASD-----DQLTKSASC--FHIHPGAAATHYL-----GSCPASLAASDLAAAPAAA--GIVGAQCTGAQNCSS 214 (368)
T ss_dssp EEEEETTTEE-----EEEEECSSC--CCCEEEETTEEEC-----CCCTTSCEEEECCSSCCCC--EECCCCSCTTSCBCS
T ss_pred EEEEEEchhh-----ceEEECCCc--eEEccCCCeEEEE-----EcCCCCEEEEECccccccC--CeEEEEeeeeeeCCC
Confidence 888 88755 223333322 1223432222211 11223344444432 0 1111000 0011111
Q ss_pred eEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceee---eecCC---------CCCeEEEEECcCCCEEEE
Q 013871 145 VQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGL---VPLRK---------EGPVHDVQWSYSGSEFAV 212 (434)
Q Consensus 145 ~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~---v~l~~---------~~~i~~v~wspdg~~~av 212 (434)
.... .+++..+++... + .++.++..+..... +.+.. ......++++||++++.+
T Consensus 215 ~P~~-~~~~~~~~~vs~------~-------~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV 280 (368)
T 1mda_H 215 QAAQ-ANYPGMLVWAVA------S-------SILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMI 280 (368)
T ss_dssp CCEE-ETTTTEEEECBS------S-------CCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEE
T ss_pred Cccc-cccCCEEEEEcC------C-------EEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEE
Confidence 1112 455555544311 1 24555553321111 11110 112223789999999887
Q ss_pred EEc-c-C-----CCeEEEEecccce-eEEeC-CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC-Cc
Q 013871 213 VYG-F-M-----PASATIFNKKCRP-ILELG-SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-CS 282 (434)
Q Consensus 213 ~~g-~-~-----~~~v~l~d~~~~~-~~~~~-~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-~~ 282 (434)
... . . ...+.++|+.... +..+. ......|+|+|||++++++... .+++|.++|+.+++.+..+... ..
T Consensus 281 ~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~-~~~~VsVID~~t~kvv~~I~vg~~P 359 (368)
T 1mda_H 281 LTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSA-GTEVLDIYDAASDQDQSSVELDKGP 359 (368)
T ss_dssp EEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEET-TTTEEEEEESSSCEEEEECCCCSCC
T ss_pred EeccccCcccccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEccC-CCCeEEEEECCCCcEEEEEECCCCC
Confidence 433 1 1 2356699997544 44442 2246789999999865555431 1369999999999999888754 44
Q ss_pred eEEEEC
Q 013871 283 VTSEWS 288 (434)
Q Consensus 283 ~~~~ws 288 (434)
..+++.
T Consensus 360 ~~i~~~ 365 (368)
T 1mda_H 360 ESLSVQ 365 (368)
T ss_dssp CEEECC
T ss_pred CEEEee
Confidence 445544
No 210
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.07 E-value=1.6e-07 Score=87.35 Aligned_cols=239 Identities=10% Similarity=-0.004 Sum_probs=140.4
Q ss_pred CeeeecCCCcEEEE--------ecCCeEEEEeCCCCCCceeeee-----ecCCeeEEEEeCC-CCCeEEEEecCCCCCCc
Q 013871 53 PSIRFSSDEAVACR--------MATNEIQFFDTTDFPKGILYRL-----RVPGVAAFEVSKA-PGSHVAVFVPESKGSPA 118 (434)
Q Consensus 53 ~~~~~S~d~~~la~--------~~~~~i~v~~~~~~~~~~~~~~-----~~~~v~~~~~sp~-~~~~ia~~~~~~~~~~~ 118 (434)
..++|++++.+++. ..++.|.+|+..+... ..... ....+..+.++++ +...++. . ..
T Consensus 21 ~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~----~---~~ 92 (314)
T 1pjx_A 21 EGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKK-TVICKPEVNGYGGIPAGCQCDRDANQLFVAD----M---RL 92 (314)
T ss_dssp EEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCE-EEEECCEETTEECCEEEEEECSSSSEEEEEE----T---TT
T ss_pred cCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcE-EEEEecccCCCCCCCceEEEecCCCcEEEEE----C---CC
Confidence 37899999998887 4567999999765432 11111 2356788999987 3222221 1 12
Q ss_pred eEEEEEcCCCCCCCceee-ee----ecccceeEEEECCCCCeEEEEEEecc----cccCceeecceeEEEEeeCCcceee
Q 013871 119 SVQIYACGKDLQSQPLAR-RS----FFRCSTVQLNWNRGSTGLLAVAQSDV----DKTNQSYYGESKLNYLTTDGTHEGL 189 (434)
Q Consensus 119 ~v~i~~~~~~~~~~~i~~-~~----~~~~~~~~~~ws~~G~~l~~~~~~~~----d~~~~~~~g~~~l~~l~~~~~~~~~ 189 (434)
.|.+|+.. . +.... .. ........+.+.++|+. .+....+. +...........|+.++..+.....
T Consensus 93 ~l~~~d~~-g---~~~~~~~~~~~~~~~~~~~~i~~d~~g~l-~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~ 167 (314)
T 1pjx_A 93 GLLVVQTD-G---TFEEIAKKDSEGRRMQGCNDCAFDYEGNL-WITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQV 167 (314)
T ss_dssp EEEEEETT-S---CEEECCSBCTTSCBCBCCCEEEECTTSCE-EEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEEEE
T ss_pred CEEEEeCC-C---CEEEEEeccCCCccccCCcCEEECCCCCE-EEEecCcccccccccccccCCCCeEEEECCCCCEEEe
Confidence 56777764 1 11110 00 01123568899999974 33221110 0000000011346777654322111
Q ss_pred eecCCCCCeEEEEEC----cCCCEEEEEEccCCCeEEEEecc-cc------eeEEeCC---cCeeEEEECCCCCeEEEEe
Q 013871 190 VPLRKEGPVHDVQWS----YSGSEFAVVYGFMPASATIFNKK-CR------PILELGS---GPYNTVRWNPKGKFLCLAG 255 (434)
Q Consensus 190 v~l~~~~~i~~v~ws----pdg~~~av~~g~~~~~v~l~d~~-~~------~~~~~~~---~~~~~i~~SP~g~~l~~~~ 255 (434)
.......+.++|+ |+|+.+.+. ....+.|.+||.+ .. ....+.. .....++++++|++++...
T Consensus 168 --~~~~~~~~~i~~~~~~d~dg~~l~v~-~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~ 244 (314)
T 1pjx_A 168 --DTAFQFPNGIAVRHMNDGRPYQLIVA-ETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANW 244 (314)
T ss_dssp --EEEESSEEEEEEEECTTSCEEEEEEE-ETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEE
T ss_pred --ccCCCCcceEEEecccCCCCCEEEEE-ECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEc
Confidence 1112356889999 999777653 4456799999975 22 1222321 4467899999998777654
Q ss_pred cCCCCCeEEEEEccCCEEEEEeeC--CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec
Q 013871 256 FGNLPGDMAFWDYVDGKQLGTTRA--ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN 315 (434)
Q Consensus 256 ~~~~~g~i~iwd~~~~~~i~~~~~--~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~ 315 (434)
.++.|.+||.++++.+..+.. ..+..++++|||++|..++.. ++.|..|+..
T Consensus 245 ---~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~-----~~~l~~~~~~ 298 (314)
T 1pjx_A 245 ---GSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHE-----NNAVWKFEWQ 298 (314)
T ss_dssp ---TTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETT-----TTEEEEEECS
T ss_pred ---CCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCC-----CCeEEEEeCC
Confidence 235899999986655444443 356679999999977766653 6788888864
No 211
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.06 E-value=1.4e-08 Score=97.14 Aligned_cols=255 Identities=9% Similarity=-0.029 Sum_probs=144.7
Q ss_pred cEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-----------CCeEEEEeCCCCCCceeeeeec-----
Q 013871 27 NVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-----------TNEIQFFDTTDFPKGILYRLRV----- 90 (434)
Q Consensus 27 ~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-----------~~~i~v~~~~~~~~~~~~~~~~----- 90 (434)
+|.+.|..+++.+.++.... . +.+.+|||++++..+. ++.|.+||+.+.... .++..
T Consensus 47 ~vsvID~~t~~v~~~i~vG~---~--P~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv--~~I~v~~~~~ 119 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAF---L--SLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPI--ADIELPDAPR 119 (368)
T ss_dssp EEEEEETTTTEEEEEEEECT---T--CEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEE--EEEEETTSCS
T ss_pred eEEEEECCCCeEEEEEeCCC---C--CceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEE--EEEECCCccc
Confidence 88899999999999988753 2 3799999999888774 478999999886543 33333
Q ss_pred ----CCeeEEEEeCCCCCeEEEEecCCCCCCceEEE--EEcCCCCCCCceeeeeec-------ccceeEEEECCCCCeEE
Q 013871 91 ----PGVAAFEVSKAPGSHVAVFVPESKGSPASVQI--YACGKDLQSQPLARRSFF-------RCSTVQLNWNRGSTGLL 157 (434)
Q Consensus 91 ----~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i--~~~~~~~~~~~i~~~~~~-------~~~~~~~~ws~~G~~l~ 157 (434)
.....+.+||++...+ +... +....+.+ +|+.+ +.....- .....-+..+++|+.+.
T Consensus 120 ~~~g~~P~~ia~SpDGk~ly-Van~---~~~~~v~V~~iD~~t------v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~ 189 (368)
T 1mda_H 120 FSVGPRVHIIGNCASSACLL-FFLF---GSSAAAGLSVPGASD------DQLTKSASCFHIHPGAAATHYLGSCPASLAA 189 (368)
T ss_dssp CCBSCCTTSEEECTTSSCEE-EEEC---SSSCEEEEEETTTEE------EEEEECSSCCCCEEEETTEEECCCCTTSCEE
T ss_pred cccCCCcceEEEcCCCCEEE-EEcc---CCCCeEEEEEEchhh------ceEEECCCceEEccCCCeEEEEEcCCCCEEE
Confidence 2356789999954433 3221 11234555 55432 1111110 01111123334444322
Q ss_pred EEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccce--e-EEe
Q 013871 158 AVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP--I-LEL 234 (434)
Q Consensus 158 ~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~--~-~~~ 234 (434)
+- .+.... +.+ ..+.... ..+.+. ..|. + ++++..++++ .. +.+.+.|..... + ..+
T Consensus 190 vd----~~~~~~-~~~----~v~~~~t---~~i~vg-~~P~---~-~~~~~~~~~v--s~-~~V~viD~~~~~~~v~~~~ 249 (368)
T 1mda_H 190 SD----LAAAPA-AAG----IVGAQCT---GAQNCS-SQAA---Q-ANYPGMLVWA--VA-SSILQGDIPAAGATMKAAI 249 (368)
T ss_dssp EE----CCSSCC-CCE----ECCCCSC---TTSCBC-SCCE---E-ETTTTEEEEC--BS-SCCEEEECCSSCCEEECCC
T ss_pred EE----Cccccc-cCC----eEEEEee---eeeeCC-CCcc---c-cccCCEEEEE--cC-CEEEEEECCCCcceEEEEE
Confidence 11 000000 000 0000000 112222 3454 3 6677777753 33 789999986432 1 111
Q ss_pred --C----------CcCeeEEEECCCCCeEEEEec---CC---CCCeEEEEEccCCEEEEEeeCC-CceEEEECCCCCEEE
Q 013871 235 --G----------SGPYNTVRWNPKGKFLCLAGF---GN---LPGDMAFWDYVDGKQLGTTRAE-CSVTSEWSPDGRYFM 295 (434)
Q Consensus 235 --~----------~~~~~~i~~SP~g~~l~~~~~---~~---~~g~i~iwd~~~~~~i~~~~~~-~~~~~~wspdg~~l~ 295 (434)
. ......+.++|||+.+.++.. +. ..+.+.++|+.+++.+..+... ....++|+|||++++
T Consensus 250 ~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~ 329 (368)
T 1mda_H 250 DGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDN 329 (368)
T ss_dssp CSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEE
T ss_pred EeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEE
Confidence 1 011223789999998887642 10 0125669999999988877654 566799999998655
Q ss_pred EEEc-CCceeeCCcEEEEeec-Cceeeeee
Q 013871 296 TATT-APRLQIDNGIKIFHHN-GSLFFKKM 323 (434)
Q Consensus 296 tas~-~prl~~D~~i~iw~~~-g~~~~~~~ 323 (434)
.+.. . ++.|.++|.. ++.+....
T Consensus 330 va~~~~-----~~~VsVID~~t~kvv~~I~ 354 (368)
T 1mda_H 330 YANSAG-----TEVLDIYDAASDQDQSSVE 354 (368)
T ss_dssp EEEETT-----TTEEEEEESSSCEEEEECC
T ss_pred EEccCC-----CCeEEEEECCCCcEEEEEE
Confidence 5543 3 8999999994 55555443
No 212
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.02 E-value=4.4e-07 Score=84.27 Aligned_cols=227 Identities=8% Similarity=0.039 Sum_probs=132.4
Q ss_pred eEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCCCc
Q 013871 4 LLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPKG 83 (434)
Q Consensus 4 ~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~~ 83 (434)
+..|+|++..|..... .++.|..||..+++. ..+... ..+.++.|++||++++.. ++.|.+|+..+....
T Consensus 17 gp~w~~~~~~l~~~d~----~~~~i~~~d~~~~~~-~~~~~~----~~~~~i~~~~dG~l~v~~-~~~l~~~d~~~g~~~ 86 (297)
T 3g4e_A 17 SPVWEEVSNSLLFVDI----PAKKVCRWDSFTKQV-QRVTMD----APVSSVALRQSGGYVATI-GTKFCALNWKEQSAV 86 (297)
T ss_dssp EEEEETTTTEEEEEET----TTTEEEEEETTTCCE-EEEECS----SCEEEEEEBTTSSEEEEE-TTEEEEEETTTTEEE
T ss_pred CCeEECCCCEEEEEEC----CCCEEEEEECCCCcE-EEEeCC----CceEEEEECCCCCEEEEE-CCeEEEEECCCCcEE
Confidence 5789997776665442 457899999988765 333322 344588999999966654 679999998653221
Q ss_pred eeeeee----cCCeeEEEEeCCCCCeEEEEecCCC---CCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeE
Q 013871 84 ILYRLR----VPGVAAFEVSKAPGSHVAVFVPESK---GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGL 156 (434)
Q Consensus 84 ~~~~~~----~~~v~~~~~sp~~~~~ia~~~~~~~---~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l 156 (434)
...... ...+.++.++|++.-.++....... .......||.+... +. +............+.|+|+|+.|
T Consensus 87 ~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~--g~-~~~~~~~~~~pngi~~spdg~~l 163 (297)
T 3g4e_A 87 VLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD--HH-VKKYFDQVDISNGLDWSLDHKIF 163 (297)
T ss_dssp EEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT--SC-EEEEEEEESBEEEEEECTTSCEE
T ss_pred EEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC--CC-EEEEeeccccccceEEcCCCCEE
Confidence 111111 1236788999985433332211100 11234567776542 22 22221122234578999999987
Q ss_pred EEEEEecccccCceeecceeEEEEeeC---Ccc---eeeeecC-CCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-c
Q 013871 157 LAVAQSDVDKTNQSYYGESKLNYLTTD---GTH---EGLVPLR-KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-C 228 (434)
Q Consensus 157 ~~~~~~~~d~~~~~~~g~~~l~~l~~~---~~~---~~~v~l~-~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~-~ 228 (434)
++..+. .+ .|+.++.. +.. .....+. ..+....+++.++|+..+ +....+.|.+||.+ +
T Consensus 164 yv~~~~----~~-------~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwv--a~~~~~~v~~~d~~tG 230 (297)
T 3g4e_A 164 YYIDSL----SY-------SVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWV--ACYNGGRVIRLDPVTG 230 (297)
T ss_dssp EEEEGG----GT-------EEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEE--EEETTTEEEEECTTTC
T ss_pred EEecCC----CC-------cEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEE--EEcCCCEEEEEcCCCc
Confidence 654211 11 23444331 110 1111222 134567899999997555 34446789999997 5
Q ss_pred ceeEEe--CCcCeeEEEEC-CCCCeEEEEec
Q 013871 229 RPILEL--GSGPYNTVRWN-PKGKFLCLAGF 256 (434)
Q Consensus 229 ~~~~~~--~~~~~~~i~~S-P~g~~l~~~~~ 256 (434)
+.+..+ +...+++++|+ |+++.|.+++.
T Consensus 231 ~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 231 KRLQTVKLPVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp CEEEEEECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred eEEEEEECCCCCceEEEEeCCCCCEEEEEcC
Confidence 655554 44678899998 89987766553
No 213
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.00 E-value=3.8e-06 Score=77.04 Aligned_cols=248 Identities=8% Similarity=-0.064 Sum_probs=145.0
Q ss_pred CCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceeeee--ecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCC
Q 013871 51 TWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRL--RVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGK 127 (434)
Q Consensus 51 ~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~--~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~ 127 (434)
.+.++.+++||++.+... ++.|.+|+.. .. .....+ ....+..+.+++++...++ . ...+.|..|+...
T Consensus 16 ~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~-~~~~~~~~~~~~~~~i~~~~~g~l~v~----~--~~~~~i~~~~~~g 87 (299)
T 2z2n_A 16 GPYGITVSDKGKVWITQHKANMISCINLD-GK-ITEYPLPTPDAKVMCLTISSDGEVWFT----E--NAANKIGRITKKG 87 (299)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTT-CC-EEEEECSSTTCCEEEEEECTTSCEEEE----E--TTTTEEEEECTTS
T ss_pred CccceEECCCCCEEEEecCCCcEEEEcCC-CC-eEEecCCcccCceeeEEECCCCCEEEe----C--CCCCeEEEECCCC
Confidence 344889999999887765 5799999977 22 122221 1346788888887432222 1 1124566665431
Q ss_pred CCCCCceeeeee--cccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecC-CCCCeEEEEEC
Q 013871 128 DLQSQPLARRSF--FRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR-KEGPVHDVQWS 204 (434)
Q Consensus 128 ~~~~~~i~~~~~--~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~-~~~~i~~v~ws 204 (434)
.+..... .......+.+.++|.. .+. .. +...++.++..+. ...+.+. ....++.+++.
T Consensus 88 -----~~~~~~~~~~~~~~~~i~~~~~g~l-~v~-~~----------~~~~i~~~d~~g~-~~~~~~~~~~~~~~~i~~~ 149 (299)
T 2z2n_A 88 -----IIKEYTLPNPDSAPYGITEGPNGDI-WFT-EM----------NGNRIGRITDDGK-IREYELPNKGSYPSFITLG 149 (299)
T ss_dssp -----CEEEEECSSTTCCEEEEEECTTSCE-EEE-ET----------TTTEEEEECTTCC-EEEEECSSTTCCEEEEEEC
T ss_pred -----cEEEEeCCCcCCCceeeEECCCCCE-EEE-ec----------CCceEEEECCCCC-EEEecCCCCCCCCceEEEc
Confidence 1211111 2234567788888763 222 11 1123555555332 2222222 24568999999
Q ss_pred cCCCEEEEEEccCCCeEEEEecccceeEE-e--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEE-eeC-
Q 013871 205 YSGSEFAVVYGFMPASATIFNKKCRPILE-L--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGT-TRA- 279 (434)
Q Consensus 205 pdg~~~av~~g~~~~~v~l~d~~~~~~~~-~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~-~~~- 279 (434)
++|+.++ +....+.+..||..+..... + .......++++|+|++++... ..+.|.+||. +++.... ...
T Consensus 150 ~~g~l~v--~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~---~~~~i~~~~~-~g~~~~~~~~~~ 223 (299)
T 2z2n_A 150 SDNALWF--TENQNNAIGRITESGDITEFKIPTPASGPVGITKGNDDALWFVEI---IGNKIGRITT-SGEITEFKIPTP 223 (299)
T ss_dssp TTSCEEE--EETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSSEEEEET---TTTEEEEECT-TCCEEEEECSST
T ss_pred CCCCEEE--EeCCCCEEEEEcCCCcEEEeeCCCCCCcceeEEECCCCCEEEEcc---CCceEEEECC-CCcEEEEECCCC
Confidence 9997655 34556789999984333221 2 234567899999999665543 2368999999 6653332 221
Q ss_pred -CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceeeee-e--cccceeeEEEcCCC
Q 013871 280 -ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKK-M--FDKLFQAEWKPVSP 337 (434)
Q Consensus 280 -~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~~~~~-~--~~~~~~~~w~p~~~ 337 (434)
..+..++++++|+.+++... ++.|.+|+.+|...... . ......+.+ +.+.
T Consensus 224 ~~~~~~i~~~~~g~l~v~~~~------~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~-~~g~ 278 (299)
T 2z2n_A 224 NARPHAITAGAGIDLWFTEWG------ANKIGRLTSNNIIEEYPIQIKSAEPHGICF-DGET 278 (299)
T ss_dssp TCCEEEEEECSTTCEEEEETT------TTEEEEEETTTEEEEEECSSSSCCEEEEEE-CSSC
T ss_pred CCCceeEEECCCCCEEEeccC------CceEEEECCCCceEEEeCCCCCCccceEEe-cCCC
Confidence 25566999999996655545 78999999877543221 1 134566666 5543
No 214
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.00 E-value=1.2e-07 Score=89.56 Aligned_cols=204 Identities=12% Similarity=0.096 Sum_probs=121.8
Q ss_pred ceEEEEEcCCCCCCCceeeee-ecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecC---
Q 013871 118 ASVQIYACGKDLQSQPLARRS-FFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR--- 193 (434)
Q Consensus 118 ~~v~i~~~~~~~~~~~i~~~~-~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~--- 193 (434)
+.|.+|+..+ ++.+.... ..-.....+.++++|+ |++ +.. . ...++.++..+.......+.
T Consensus 69 ~~i~~~d~~~---g~~~~~~~~~~~~~p~gia~d~~g~-l~v-~d~-~---------~~~v~~~~~~g~~~~~~~~~~~~ 133 (329)
T 3fvz_A 69 DTILVIDPNN---AEILQSSGKNLFYLPHGLSIDTDGN-YWV-TDV-A---------LHQVFKLDPHSKEGPLLILGRSM 133 (329)
T ss_dssp CCEEEECTTT---CCEEEEECTTTCSSEEEEEECTTSC-EEE-EET-T---------TTEEEEECTTCSSCCSEEESBTT
T ss_pred CcEEEEECCC---CeEEeccCCCccCCceEEEECCCCC-EEE-EEC-C---------CCEEEEEeCCCCeEEEEEecccC
Confidence 4677777655 33332221 1112456788999998 333 222 1 11345555444311222221
Q ss_pred -------CCCCeEEEEECc-CCCEEEEEEccCCCeEEEEecccceeEEeCC------------cCeeEEEECCCCCeEEE
Q 013871 194 -------KEGPVHDVQWSY-SGSEFAVVYGFMPASATIFNKKCRPILELGS------------GPYNTVRWNPKGKFLCL 253 (434)
Q Consensus 194 -------~~~~i~~v~wsp-dg~~~av~~g~~~~~v~l~d~~~~~~~~~~~------------~~~~~i~~SP~g~~l~~ 253 (434)
.-.....++++| +|..++ +.+..++.|.+||..+..+..+.. ...+.|+++|++..|++
T Consensus 134 ~~g~~~~~~~~P~~ia~~~~~g~lyv-~d~~~~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v 212 (329)
T 3fvz_A 134 QPGSDQNHFCQPTDVAVEPSTGAVFV-SDGYCNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCV 212 (329)
T ss_dssp BCCCSTTCCSSEEEEEECTTTCCEEE-EECSSCCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEE
T ss_pred CCCCCccccCCCcEEEEeCCCCeEEE-EeCCCCCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEE
Confidence 123578999999 565554 222357899999988777776631 12578999999555555
Q ss_pred EecCCCCCeEEEEEccCCEEEEEeeCC----CceEEEECCCCCEEEEEEcCCc-eeeCCcEEEEee-cCceeeee-----
Q 013871 254 AGFGNLPGDMAFWDYVDGKQLGTTRAE----CSVTSEWSPDGRYFMTATTAPR-LQIDNGIKIFHH-NGSLFFKK----- 322 (434)
Q Consensus 254 ~~~~~~~g~i~iwd~~~~~~i~~~~~~----~~~~~~wspdg~~l~tas~~pr-l~~D~~i~iw~~-~g~~~~~~----- 322 (434)
+..++ +.|.+||.++++.+..+... .+..++|+| |..+.+.+...- -..++.|++|++ +|+++...
T Consensus 213 ~d~~~--~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~ 289 (329)
T 3fvz_A 213 ADREN--GRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRK 289 (329)
T ss_dssp EETTT--TEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSS
T ss_pred EECCC--CEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCC
Confidence 65443 79999999988888877432 456689999 444443332000 001568999996 67666553
Q ss_pred ecccceeeEEEcCCCCCCC
Q 013871 323 MFDKLFQAEWKPVSPDKFG 341 (434)
Q Consensus 323 ~~~~~~~~~w~p~~~~~~~ 341 (434)
.......+++.|++ .+|-
T Consensus 290 ~~~~p~~ia~~~dG-~lyv 307 (329)
T 3fvz_A 290 HFDMPHDIVASEDG-TVYI 307 (329)
T ss_dssp CCSSEEEEEECTTS-EEEE
T ss_pred ccCCeeEEEECCCC-CEEE
Confidence 33457788898887 4443
No 215
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.97 E-value=8.1e-08 Score=96.07 Aligned_cols=261 Identities=10% Similarity=0.091 Sum_probs=155.3
Q ss_pred CCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeee-c-CCCcEEEEec------------------
Q 013871 9 RVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRF-S-SDEAVACRMA------------------ 68 (434)
Q Consensus 9 P~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~-S-~d~~~la~~~------------------ 68 (434)
|||+||..... .+..|.+.|+.+.++...+..... .....+.+ + ||++++....
T Consensus 99 ~DG~~lfVnd~----~~~rVavIdl~t~~~~~ii~ip~g--~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~ 172 (595)
T 1fwx_A 99 YDGRFLFMNDK----ANTRVARVRCDVMKCDAILEIPNA--KGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVAN 172 (595)
T ss_dssp EEEEEEEEEET----TTTEEEEEETTTTEEEEEEECSSC--CSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGG
T ss_pred cCCCEEEEEcC----CCCEEEEEECCCceEeeEEeCCCC--CCCcceeeeecCCCcEEEEecccccccCCCCcccccccc
Confidence 49999988662 356799999999998775433221 23336676 5 8999887763
Q ss_pred -CCeEEEEeCCCCCCceeeeeec-CCeeEEEEeCCCCCeEEEEecCC-C---------CCCceEEEEEcCCCCCCCceee
Q 013871 69 -TNEIQFFDTTDFPKGILYRLRV-PGVAAFEVSKAPGSHVAVFVPES-K---------GSPASVQIYACGKDLQSQPLAR 136 (434)
Q Consensus 69 -~~~i~v~~~~~~~~~~~~~~~~-~~v~~~~~sp~~~~~ia~~~~~~-~---------~~~~~v~i~~~~~~~~~~~i~~ 136 (434)
++.+.+.|..... ...++.. .....+.++|++...+.. ...+ . .....|.+.+.+.. ..
T Consensus 173 ~~~~vtvID~~t~~--v~~qI~Vgg~pd~~~~spdGk~~~vt-~~~se~~~~i~~~~~~~~d~v~V~~~~~~---~~--- 243 (595)
T 1fwx_A 173 YVNVFTAVDADKWE--VAWQVLVSGNLDNCDADYEGKWAFST-SYNSEKGMTLPEMTAAEMDHIVVFNIAEI---EK--- 243 (595)
T ss_dssp EEEEEEEEETTTTE--EEEEEEESSCCCCEEECSSSSEEEEE-ESCTTCCSSHHHHTCCSEEEEEEEEHHHH---HH---
T ss_pred cCceEEEEECCCCe--EEEEEEeCCCccceEECCCCCEEEEE-ecCcccCcchhhccccccceEEEeeccce---eE---
Confidence 2478888887643 3445544 244567789984332222 2111 1 11134555554431 00
Q ss_pred eeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCC--c-c-eeeeecCCCCCeEEEEECcCCCEEEE
Q 013871 137 RSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDG--T-H-EGLVPLRKEGPVHDVQWSYSGSEFAV 212 (434)
Q Consensus 137 ~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~--~-~-~~~v~l~~~~~i~~v~wspdg~~~av 212 (434)
..++|+.+.+ + .+-.++... . . ...++.. ...+.+.++|||+++++
T Consensus 244 ------------~v~~Gk~~~i--------------~--~V~VID~~~~~~~~~~~~Ipvg--~~PhGv~~sPDGk~v~V 293 (595)
T 1fwx_A 244 ------------AIAAGDYQEL--------------N--GVKVVDGRKEASSLFTRYIPIA--NNPHGCNMAPDKKHLCV 293 (595)
T ss_dssp ------------HHHHTCSEEE--------------T--TEEEEECSGGGCCSSEEEEEEE--SSCCCEEECTTSSEEEE
T ss_pred ------------eccCCCeeEE--------------C--cEEEEeCcccCCceeEEEEecC--CCceEEEEcCCCCEEEE
Confidence 1223443221 1 123333332 1 1 1233332 35688999999999887
Q ss_pred EEccCCCeEEEEecccc-------------eeEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccC-------
Q 013871 213 VYGFMPASATIFNKKCR-------------PILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD------- 270 (434)
Q Consensus 213 ~~g~~~~~v~l~d~~~~-------------~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~------- 270 (434)
++....++.+||.... .+.+. +.+ -..++|+|+| ++.+..+ ++++|.+||+++
T Consensus 294 -~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~g-P~h~aF~~dG-~aY~t~~--ldsqV~kwdi~~a~~~~~g 368 (595)
T 1fwx_A 294 -AGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLG-PLHTAFDGRG-NAYTSLF--LDSQVVKWNIEDAIRAYAG 368 (595)
T ss_dssp -ECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSC-EEEEEECTTS-EEEEEET--TTTEEEEEEHHHHHHHHHT
T ss_pred -eCCCCCeEEEEECcccccccccccCcccceEEEcCCCCC-cceEEECCCC-eEEEEEe--cCCcEEEEEhhHhhhhhcc
Confidence 5777779999999743 22233 233 3568999999 6655554 567999999987
Q ss_pred ---CEEEEEeeCCCc-eE------EEECCCCCEEEEEEcCCceee-------CCcEEEEeecCcee
Q 013871 271 ---GKQLGTTRAECS-VT------SEWSPDGRYFMTATTAPRLQI-------DNGIKIFHHNGSLF 319 (434)
Q Consensus 271 ---~~~i~~~~~~~~-~~------~~wspdg~~l~tas~~prl~~-------D~~i~iw~~~g~~~ 319 (434)
.+.+.++..+.. -+ ...+|||++|+++.....=|. -..-.|+|++|..+
T Consensus 369 ~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m 434 (595)
T 1fwx_A 369 EKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKM 434 (595)
T ss_dssp CSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSC
T ss_pred cccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCcE
Confidence 567777766522 22 345899999999876422110 01128899987643
No 216
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.91 E-value=2.9e-06 Score=79.84 Aligned_cols=218 Identities=9% Similarity=0.053 Sum_probs=130.6
Q ss_pred eeeecCCCcEEEEe--cCCeEEEEeCCCCCCceeeeee-cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCC
Q 013871 54 SIRFSSDEAVACRM--ATNEIQFFDTTDFPKGILYRLR-VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQ 130 (434)
Q Consensus 54 ~~~~S~d~~~la~~--~~~~i~v~~~~~~~~~~~~~~~-~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~ 130 (434)
.+.|++++..++.. .++.|.+|+..... ...+. ...+..+.++|++ .+++. . . ..|.+|+..+
T Consensus 53 gp~~~~~~~~l~~~d~~~~~i~~~d~~~~~---~~~~~~~~~v~~i~~~~dg-~l~v~-~-~-----~gl~~~d~~~--- 118 (326)
T 2ghs_A 53 GPTFDPASGTAWWFNILERELHELHLASGR---KTVHALPFMGSALAKISDS-KQLIA-S-D-----DGLFLRDTAT--- 118 (326)
T ss_dssp EEEEETTTTEEEEEEGGGTEEEEEETTTTE---EEEEECSSCEEEEEEEETT-EEEEE-E-T-----TEEEEEETTT---
T ss_pred CCeEeCCCCEEEEEECCCCEEEEEECCCCc---EEEEECCCcceEEEEeCCC-eEEEE-E-C-----CCEEEEECCC---
Confidence 68999986544443 45799999987632 12222 2468889999984 33322 1 1 2377777655
Q ss_pred CCceeeeeec----ccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcC
Q 013871 131 SQPLARRSFF----RCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYS 206 (434)
Q Consensus 131 ~~~i~~~~~~----~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspd 206 (434)
++........ ......+.++++|+. ++.... .+. ......||.++ .+.. ..+ .......+.++|+||
T Consensus 119 g~~~~~~~~~~~~~~~~~~~i~~d~~G~l-~v~~~~-~~~----~~~~~~l~~~~-~g~~-~~~-~~~~~~~~~i~~s~d 189 (326)
T 2ghs_A 119 GVLTLHAELESDLPGNRSNDGRMHPSGAL-WIGTMG-RKA----ETGAGSIYHVA-KGKV-TKL-FADISIPNSICFSPD 189 (326)
T ss_dssp CCEEEEECSSTTCTTEEEEEEEECTTSCE-EEEEEE-TTC----CTTCEEEEEEE-TTEE-EEE-EEEESSEEEEEECTT
T ss_pred CcEEEEeeCCCCCCCCCCCCEEECCCCCE-EEEeCC-CcC----CCCceEEEEEe-CCcE-EEe-eCCCcccCCeEEcCC
Confidence 3221111110 123567899999984 332211 110 01223577777 4321 111 111235678999999
Q ss_pred CCEEEEEEccCCCeEEEEecc--cc-e------eEEeC--CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEE
Q 013871 207 GSEFAVVYGFMPASATIFNKK--CR-P------ILELG--SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLG 275 (434)
Q Consensus 207 g~~~av~~g~~~~~v~l~d~~--~~-~------~~~~~--~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~ 275 (434)
|+.++++ ....+.|.+||.. .. . +..+. ......+++.++|++.+... + .+.|.+||. +++.+.
T Consensus 190 g~~lyv~-~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~-~--~~~v~~~d~-~g~~~~ 264 (326)
T 2ghs_A 190 GTTGYFV-DTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARW-G--EGAVDRYDT-DGNHIA 264 (326)
T ss_dssp SCEEEEE-ETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEE-T--TTEEEEECT-TCCEEE
T ss_pred CCEEEEE-ECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEe-C--CCEEEEECC-CCCEEE
Confidence 9988774 4456799999974 22 1 22332 34457899999998666543 2 258999998 566666
Q ss_pred EeeCC--CceEEEEC-CCCCEEEEEEc
Q 013871 276 TTRAE--CSVTSEWS-PDGRYFMTATT 299 (434)
Q Consensus 276 ~~~~~--~~~~~~ws-pdg~~l~tas~ 299 (434)
.+..+ .+..++|+ ||++.|++++.
T Consensus 265 ~i~~~~~~~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 265 RYEVPGKQTTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp EEECSCSBEEEEEEESTTSCEEEEEEB
T ss_pred EEECCCCCcEEEEEecCCCCEEEEEec
Confidence 65544 46779998 99988877766
No 217
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.89 E-value=9.3e-07 Score=82.31 Aligned_cols=222 Identities=9% Similarity=0.027 Sum_probs=129.2
Q ss_pred eeeecCCCcEEEEe--cCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCC
Q 013871 54 SIRFSSDEAVACRM--ATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQS 131 (434)
Q Consensus 54 ~~~~S~d~~~la~~--~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~ 131 (434)
.+.|++|++.|+.. .++.|..|+... . ..........+..+.++|++ .++++- .....|.+|+...
T Consensus 49 gp~~~~~g~~l~~~d~~~~~i~~~~~~g-~-~~~~~~~~~~~~gl~~d~dG-~l~v~~-----~~~~~v~~~~~~g---- 116 (305)
T 3dr2_A 49 GPAWWEAQRTLVWSDLVGRRVLGWREDG-T-VDVLLDATAFTNGNAVDAQQ-RLVHCE-----HGRRAITRSDADG---- 116 (305)
T ss_dssp EEEEEGGGTEEEEEETTTTEEEEEETTS-C-EEEEEESCSCEEEEEECTTS-CEEEEE-----TTTTEEEEECTTS----
T ss_pred CCeEeCCCCEEEEEECCCCEEEEEeCCC-C-EEEEeCCCCccceeeECCCC-CEEEEE-----CCCCEEEEECCCC----
Confidence 68999999954444 457999998732 2 22333344567889999984 343321 1123566666531
Q ss_pred Cceeeee-ecc----cceeEEEECCCCCeEEEEEEecccccCc--------eeecceeEEEEeeCCcceeeeecCCCCCe
Q 013871 132 QPLARRS-FFR----CSTVQLNWNRGSTGLLAVAQSDVDKTNQ--------SYYGESKLNYLTTDGTHEGLVPLRKEGPV 198 (434)
Q Consensus 132 ~~i~~~~-~~~----~~~~~~~ws~~G~~l~~~~~~~~d~~~~--------~~~g~~~l~~l~~~~~~~~~v~l~~~~~i 198 (434)
+ +.... ... .....+.+.++|+.. +++... .+.. .-.+...||.++..+.....+. .....
T Consensus 117 ~-~~~~~~~~~~~~~~~~~~i~~d~dG~l~--~td~~~-g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p 190 (305)
T 3dr2_A 117 Q-AHLLVGRYAGKRLNSPNDLIVARDGAIW--FTDPPF-GLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHP 190 (305)
T ss_dssp C-EEEEECEETTEECSCCCCEEECTTSCEE--EECCSG-GGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSE
T ss_pred C-EEEEEeccCCCccCCCCCEEECCCCCEE--EeCcCC-CccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCC
Confidence 1 11111 011 123468899999733 221100 0000 0011245788876433222332 23456
Q ss_pred EEEEECcCCCEEEEEEccC----CCeEEEEeccccee------EEeCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEc
Q 013871 199 HDVQWSYSGSEFAVVYGFM----PASATIFNKKCRPI------LELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDY 268 (434)
Q Consensus 199 ~~v~wspdg~~~av~~g~~----~~~v~l~d~~~~~~------~~~~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~ 268 (434)
+.++|+|||+.++++.... .+.|.+||+....+ .....+....+++.++|++.+ +. . +.|.+||.
T Consensus 191 ~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv-~~-~---~gv~~~~~ 265 (305)
T 3dr2_A 191 NGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWS-SS-G---TGVCVFDS 265 (305)
T ss_dssp EEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEE-CC-S---SEEEEECT
T ss_pred cceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEE-ec-C---CcEEEECC
Confidence 7899999999887753321 26899999864322 122344456799999999544 33 1 25999998
Q ss_pred cCCEEEEEeeCC-CceEEEECCCCCEEEEEEc
Q 013871 269 VDGKQLGTTRAE-CSVTSEWSPDGRYFMTATT 299 (434)
Q Consensus 269 ~~~~~i~~~~~~-~~~~~~wspdg~~l~tas~ 299 (434)
+++.+..+..+ .+..++|+||++.|..++.
T Consensus 266 -~g~~~~~~~~~~~~~~~~f~~d~~~L~it~~ 296 (305)
T 3dr2_A 266 -DGQLLGHIPTPGTASNCTFDQAQQRLFITGG 296 (305)
T ss_dssp -TSCEEEEEECSSCCCEEEECTTSCEEEEEET
T ss_pred -CCCEEEEEECCCceeEEEEeCCCCEEEEEcC
Confidence 46666655544 5667999999999888876
No 218
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.88 E-value=2.4e-06 Score=80.44 Aligned_cols=225 Identities=10% Similarity=-0.013 Sum_probs=130.9
Q ss_pred ceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCCC
Q 013871 3 LLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPK 82 (434)
Q Consensus 3 ~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~ 82 (434)
.+..|+|++..|+.... .++.|.+||..+++. ..+... ..+.++.|++||++++.. .+.|.+|+..+...
T Consensus 52 egp~~~~~~~~l~~~d~----~~~~i~~~d~~~~~~-~~~~~~----~~v~~i~~~~dg~l~v~~-~~gl~~~d~~~g~~ 121 (326)
T 2ghs_A 52 EGPTFDPASGTAWWFNI----LERELHELHLASGRK-TVHALP----FMGSALAKISDSKQLIAS-DDGLFLRDTATGVL 121 (326)
T ss_dssp EEEEEETTTTEEEEEEG----GGTEEEEEETTTTEE-EEEECS----SCEEEEEEEETTEEEEEE-TTEEEEEETTTCCE
T ss_pred cCCeEeCCCCEEEEEEC----CCCEEEEEECCCCcE-EEEECC----CcceEEEEeCCCeEEEEE-CCCEEEEECCCCcE
Confidence 36789998766655442 357899999887754 334322 345588999999988866 45699999765432
Q ss_pred ceeeeee----cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEE
Q 013871 83 GILYRLR----VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLA 158 (434)
Q Consensus 83 ~~~~~~~----~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~ 158 (434)
....... ...+.++.++|++...++.... ........||.+.+ ++.. ...........+.|+++|+.+++
T Consensus 122 ~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~--~~~~~~~~l~~~~~---g~~~-~~~~~~~~~~~i~~s~dg~~lyv 195 (326)
T 2ghs_A 122 TLHAELESDLPGNRSNDGRMHPSGALWIGTMGR--KAETGAGSIYHVAK---GKVT-KLFADISIPNSICFSPDGTTGYF 195 (326)
T ss_dssp EEEECSSTTCTTEEEEEEEECTTSCEEEEEEET--TCCTTCEEEEEEET---TEEE-EEEEEESSEEEEEECTTSCEEEE
T ss_pred EEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCC--cCCCCceEEEEEeC---CcEE-EeeCCCcccCCeEEcCCCCEEEE
Confidence 1111110 1247789999985422222111 11122344555543 3222 11111123457899999998766
Q ss_pred EEEecccccCceeecceeEEEEeeC--Cc-c----eeeeecC-CCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccce
Q 013871 159 VAQSDVDKTNQSYYGESKLNYLTTD--GT-H----EGLVPLR-KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP 230 (434)
Q Consensus 159 ~~~~~~d~~~~~~~g~~~l~~l~~~--~~-~----~~~v~l~-~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~ 230 (434)
..+. ...|+.++.. .+ . .....+. ..+....+++.++|..++. ....+.|.+||.+++.
T Consensus 196 ~~~~-----------~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva--~~~~~~v~~~d~~g~~ 262 (326)
T 2ghs_A 196 VDTK-----------VNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNA--RWGEGAVDRYDTDGNH 262 (326)
T ss_dssp EETT-----------TCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEE--EETTTEEEEECTTCCE
T ss_pred EECC-----------CCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEE--EeCCCEEEEECCCCCE
Confidence 4211 1135555543 11 1 1111222 1345678999999976553 3345689999987665
Q ss_pred eEEe--CCcCeeEEEEC-CCCCeEEEEec
Q 013871 231 ILEL--GSGPYNTVRWN-PKGKFLCLAGF 256 (434)
Q Consensus 231 ~~~~--~~~~~~~i~~S-P~g~~l~~~~~ 256 (434)
+..+ +...+.+++|+ |+++.|.++..
T Consensus 263 ~~~i~~~~~~~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 263 IARYEVPGKQTTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp EEEEECSCSBEEEEEEESTTSCEEEEEEB
T ss_pred EEEEECCCCCcEEEEEecCCCCEEEEEec
Confidence 5544 45568899998 99887766543
No 219
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.88 E-value=4.6e-07 Score=86.03 Aligned_cols=259 Identities=8% Similarity=-0.027 Sum_probs=140.8
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecC----cCCCCCCeeeecCCCcEEEEec------CCe
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKN----MTKTTWPSIRFSSDEAVACRMA------TNE 71 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~----~~~~~~~~~~~S~d~~~la~~~------~~~ 71 (434)
+..|+++|+|+.+++..+.. ++.++||.+.+|+ +..|.... .+......+++++++++.+.-. +..
T Consensus 19 p~~va~~~~g~~~v~~~~~~---~~~~~l~~~~~g~-~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~ 94 (343)
T 2qe8_A 19 PGNITLTPDGRLFLSLHQFY---QPEMQVAELTQDG-LIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPK 94 (343)
T ss_dssp EEEEEECTTSCEEEEECGGG---CCSCSEEEEETTE-EEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCE
T ss_pred cceEEECCCCCEEEEeCCCC---CCceEEEEECCCC-eecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCe
Confidence 46789999999999865432 2225666655664 34443210 0113344789999998776542 479
Q ss_pred EEEEeCCCCCCceeeeeec------CCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeeccccee
Q 013871 72 IQFFDTTDFPKGILYRLRV------PGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTV 145 (434)
Q Consensus 72 i~v~~~~~~~~~~~~~~~~------~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~ 145 (434)
|.+||+.+........+.. ..+..++++|+++ .+ ++...+.+....|.+|++.+ ++.......+..-..
T Consensus 95 i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g-~~-yvtd~~~~~~~~i~v~d~~~---g~~~r~~~~~~~~~~ 169 (343)
T 2qe8_A 95 LVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHN-FV-YISDPAPDDKAALIRVDLQT---GLAARVLQGYPGIAP 169 (343)
T ss_dssp EEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTT-EE-EEEECCSGGGCEEEEEETTT---CCEEEECTTCTTTSC
T ss_pred EEEEECCCCeEEEEEECChhhcccccccceEEEecCCC-EE-EEEcCccCCCCeEEEEECCC---CCEEEEecCCCcccc
Confidence 9999987643222222211 2357889998633 22 22221111345788888865 333222211100000
Q ss_pred -EEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEE
Q 013871 146 -QLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIF 224 (434)
Q Consensus 146 -~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~ 224 (434)
...+..+|..+ +..+..+. .. .+ ...+..++|+|||+.+++. ......+..+
T Consensus 170 ~~~~~~~~g~~~---------------------~~~~~~g~-~~--~~--~~~~~gia~s~dg~~ly~~-~~~~~~l~~~ 222 (343)
T 2qe8_A 170 EDIDLVIDGVPV---------------------QIGQPDGT-VI--RP--HLGVNGIVLDAENEWLYLS-PMHSTSMYRI 222 (343)
T ss_dssp CSCCCEETTEEC---------------------BEECTTSC-EE--CC--CCCEEEEEECTTSCEEEEE-ESSCSEEEEE
T ss_pred cccceeECCEEE---------------------EeccCCCc-ee--ce--ecccceeEeccCCCEEEEE-eCCCCeEEEE
Confidence 01111122211 11111111 00 01 1346789999999988864 2223366666
Q ss_pred ecccc------------eeEEe-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC---CCceEEEEC
Q 013871 225 NKKCR------------PILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA---ECSVTSEWS 288 (434)
Q Consensus 225 d~~~~------------~~~~~-~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~---~~~~~~~ws 288 (434)
+.... .+..+ +.+....++++++|+++++.. ..+.|.+||.++++....... ..+..++++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~---~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~ 299 (343)
T 2qe8_A 223 KSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDL---AHSAIGVITSADRAYKLLVTDEKLSWTDSFNFG 299 (343)
T ss_dssp EHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEG---GGTEEEEEETTTTEEEEEEECGGGSCEEEEEEC
T ss_pred EHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEcc---CCCeEEEEECCCCCEEEEEECCceecCCeeEEC
Confidence 64210 01111 233456799999998776654 236999999866654333322 256679999
Q ss_pred CCCCEEEEEEc
Q 013871 289 PDGRYFMTATT 299 (434)
Q Consensus 289 pdg~~l~tas~ 299 (434)
++|+.++++..
T Consensus 300 ~~g~l~v~~~~ 310 (343)
T 2qe8_A 300 SDGYLYFDCNQ 310 (343)
T ss_dssp TTSCEEEEECC
T ss_pred CCCcEEEEeCc
Confidence 99998887765
No 220
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=98.87 E-value=4.3e-07 Score=83.57 Aligned_cols=181 Identities=10% Similarity=0.108 Sum_probs=123.8
Q ss_pred CCCceEEEEEcCCCCCCCceeeeeecc-cceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecC
Q 013871 115 GSPASVQIYACGKDLQSQPLARRSFFR-CSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR 193 (434)
Q Consensus 115 ~~~~~v~i~~~~~~~~~~~i~~~~~~~-~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~ 193 (434)
...+.|.+|+..+ ++.+-+..... .....+.+.|+|+.++ . . +. .++.++..+...-.+...
T Consensus 12 ~~~~~v~~~d~~t---G~~~w~~~~~~~~~~~~~~~~pdG~ilv-s--~--~~---------~V~~~d~~G~~~W~~~~~ 74 (276)
T 3no2_A 12 SGWNKIAIINKDT---KEIVWEYPLEKGWECNSVAATKAGEILF-S--Y--SK---------GAKMITRDGRELWNIAAP 74 (276)
T ss_dssp TTCSEEEEEETTT---TEEEEEEECCTTCCCCEEEECTTSCEEE-E--C--BS---------EEEEECTTSCEEEEEECC
T ss_pred CCCCEEEEEECCC---CeEEEEeCCCccCCCcCeEECCCCCEEE-e--C--CC---------CEEEECCCCCEEEEEcCC
Confidence 3456778888766 56665555443 3556788899998554 1 1 11 244444433322222332
Q ss_pred CCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeEEeC--C------cCeeEEEECCCCCeEEEEecCCCCCeEEE
Q 013871 194 KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELG--S------GPYNTVRWNPKGKFLCLAGFGNLPGDMAF 265 (434)
Q Consensus 194 ~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~~~--~------~~~~~i~~SP~g~~l~~~~~~~~~g~i~i 265 (434)
....++++++.|+|+.++..++ .++.+..+|.+++.+.++. . .....+.+.++|++|++.. .++.|..
T Consensus 75 ~~~~~~~~~~~~dG~~lv~~~~-~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~---~~~~v~~ 150 (276)
T 3no2_A 75 AGCEMQTARILPDGNALVAWCG-HPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLF---ATSEVRE 150 (276)
T ss_dssp TTCEEEEEEECTTSCEEEEEES-TTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEET---TTTEEEE
T ss_pred CCccccccEECCCCCEEEEecC-CCCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCEEEEec---CCCEEEE
Confidence 2346889999999998885333 1568888888887766652 1 1344578899999998765 4579999
Q ss_pred EEccCCEEEEEeeCC-CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec-Cceeeeee
Q 013871 266 WDYVDGKQLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLFFKKM 323 (434)
Q Consensus 266 wd~~~~~~i~~~~~~-~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~-g~~~~~~~ 323 (434)
||.+ ++.+..+..+ .+..+...++|+.++++.. ++.|..+|.. |+.+.+..
T Consensus 151 ~d~~-G~~~w~~~~~~~~~~~~~~~~g~~~v~~~~------~~~v~~~d~~tG~~~w~~~ 203 (276)
T 3no2_A 151 IAPN-GQLLNSVKLSGTPFSSAFLDNGDCLVACGD------AHCFVQLNLESNRIVRRVN 203 (276)
T ss_dssp ECTT-SCEEEEEECSSCCCEEEECTTSCEEEECBT------TSEEEEECTTTCCEEEEEE
T ss_pred ECCC-CCEEEEEECCCCccceeEcCCCCEEEEeCC------CCeEEEEeCcCCcEEEEec
Confidence 9998 9999888764 4556788999999988877 6778899987 88876654
No 221
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.85 E-value=7.8e-06 Score=74.34 Aligned_cols=249 Identities=10% Similarity=0.024 Sum_probs=142.3
Q ss_pred CcEEEEEecCCCCCCCcEEEEEcCCCcE-------EEEEeecCcCCCCCCeeeecCCCcEEEEe--cCCeEEEEeCCCCC
Q 013871 11 GLIIQTFQKSSTPQEKNVILWKTETGEA-------VYQLFQKNMTKTTWPSIRFSSDEAVACRM--ATNEIQFFDTTDFP 81 (434)
Q Consensus 11 g~~L~t~~~~~~~~d~~v~iWd~~~g~~-------~~~~~~~~~~~~~~~~~~~S~d~~~la~~--~~~~i~v~~~~~~~ 81 (434)
|.+|+... .+.|+.+++..... +..... .....++|++++..|... .++.|.+++.....
T Consensus 1 ~~~l~~~~------~~~I~~~~~~g~~~~~~~~~~~~~~~~-----~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~ 69 (267)
T 1npe_A 1 GTHLLFAQ------TGKIERLPLERNTMKKTEAKAFLHIPA-----KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGE 69 (267)
T ss_dssp CEEEEEEE------EEEEEEEEESSSCBCGGGCEEEEEEEE-----EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCC
T ss_pred CcEEEEEc------CCeEEEEEecCcccccccceeeecCCC-----CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCC
Confidence 55666655 24688888765431 111111 112278999977655554 35799999986533
Q ss_pred CceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEE
Q 013871 82 KGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQ 161 (434)
Q Consensus 82 ~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~ 161 (434)
..............++++|+++. +- +.. ...+.|.++++.. ................+.++|++..|.+..
T Consensus 70 ~~~~~~~~~~~p~~ia~d~~~~~-ly-v~d---~~~~~I~~~~~~g---~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~- 140 (267)
T 1npe_A 70 PTTIIRQDLGSPEGIALDHLGRT-IF-WTD---SQLDRIEVAKMDG---TQRRVLFDTGLVNPRGIVTDPVRGNLYWTD- 140 (267)
T ss_dssp CEEEECTTCCCEEEEEEETTTTE-EE-EEE---TTTTEEEEEETTS---CSCEEEECSSCSSEEEEEEETTTTEEEEEE-
T ss_pred cEEEEECCCCCccEEEEEecCCe-EE-EEE---CCCCEEEEEEcCC---CCEEEEEECCCCCccEEEEeeCCCEEEEEE-
Confidence 21111112346788899986332 22 221 1235777777753 111111111112345788888777765532
Q ss_pred ecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeEEe--CCcCe
Q 013871 162 SDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL--GSGPY 239 (434)
Q Consensus 162 ~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~~--~~~~~ 239 (434)
.. . ....|+.+..++.....+....-.....++++|++..+.++ ....+.|.++|..+.....+ ....-
T Consensus 141 ~~--~------~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~-d~~~~~I~~~~~~g~~~~~~~~~~~~P 211 (267)
T 1npe_A 141 WN--R------DNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWV-DAGTHRAECLNPAQPGRRKVLEGLQYP 211 (267)
T ss_dssp CC--S------SSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEE-ETTTTEEEEEETTEEEEEEEEECCCSE
T ss_pred CC--C------CCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEE-ECCCCEEEEEecCCCceEEEecCCCCc
Confidence 10 0 01235666655543222221223456889999998888774 45567999999976543333 11222
Q ss_pred eEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC---CceEEEECCCCC
Q 013871 240 NTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE---CSVTSEWSPDGR 292 (434)
Q Consensus 240 ~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~---~~~~~~wspdg~ 292 (434)
..++ +++..|.++..++ +.|..+|..+++.+..+... ....+++.||+.
T Consensus 212 ~gi~--~d~~~lyva~~~~--~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 212 FAVT--SYGKNLYYTDWKT--NSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp EEEE--EETTEEEEEETTT--TEEEEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred eEEE--EeCCEEEEEECCC--CeEEEEeCCCCCceEEEccccccccceeeecCccC
Confidence 3454 4567777777654 69999999999888877543 355688888875
No 222
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=98.79 E-value=3.7e-05 Score=70.32 Aligned_cols=231 Identities=11% Similarity=-0.021 Sum_probs=135.5
Q ss_pred CeeeecCCCcEEEEe-cCCeEEEEeCCCCCCceeeeee--cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCC
Q 013871 53 PSIRFSSDEAVACRM-ATNEIQFFDTTDFPKGILYRLR--VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDL 129 (434)
Q Consensus 53 ~~~~~S~d~~~la~~-~~~~i~v~~~~~~~~~~~~~~~--~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~ 129 (434)
..+.+.+||++.+.. .++.|.+|+.. .. .....+. ...+..+.+++++.-.++ . ...+.|..++...
T Consensus 23 ~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~-~~~~~~~~~~~~~~~i~~~~~g~l~v~----~--~~~~~v~~~d~~g-- 92 (300)
T 2qc5_A 23 YGITSSEDGKVWFTQHKANKISSLDQS-GR-IKEFEVPTPDAKVMCLIVSSLGDIWFT----E--NGANKIGKLSKKG-- 92 (300)
T ss_dssp EEEEECTTSCEEEEETTTTEEEEECTT-SC-EEEEECSSTTCCEEEEEECTTSCEEEE----E--TTTTEEEEECTTS--
T ss_pred ceeeECCCCCEEEEcCCCCeEEEECCC-Cc-eEEEECCCCCCcceeEEECCCCCEEEE----e--cCCCeEEEECCCC--
Confidence 378899999987776 46799999976 22 1211221 245778888887432222 1 1124566665431
Q ss_pred CCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecC-CCCCeEEEEECcCCC
Q 013871 130 QSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR-KEGPVHDVQWSYSGS 208 (434)
Q Consensus 130 ~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~-~~~~i~~v~wspdg~ 208 (434)
................+.+.++|... +. .. +...|+.++..+. ...+.+. ....++.+++.++|+
T Consensus 93 -~~~~~~~~~~~~~~~~i~~~~~g~l~-v~-~~----------~~~~i~~~~~~g~-~~~~~~~~~~~~~~~i~~d~~g~ 158 (300)
T 2qc5_A 93 -GFTEYPLPQPDSGPYGITEGLNGDIW-FT-QL----------NGDRIGKLTADGT-IYEYDLPNKGSYPAFITLGSDNA 158 (300)
T ss_dssp -CEEEEECSSTTCCEEEEEECSTTCEE-EE-ET----------TTTEEEEECTTSC-EEEEECSSTTCCEEEEEECTTSS
T ss_pred -CeEEecCCCCCCCCccceECCCCCEE-EE-cc----------CCCeEEEECCCCC-EEEccCCCCCCCceeEEECCCCC
Confidence 11111111112345677788887632 22 11 1123556655433 2223333 245688999999998
Q ss_pred EEEEEEccCCCeEEEEecccceeE-Ee--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEE-ee--CCCc
Q 013871 209 EFAVVYGFMPASATIFNKKCRPIL-EL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGT-TR--AECS 282 (434)
Q Consensus 209 ~~av~~g~~~~~v~l~d~~~~~~~-~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~-~~--~~~~ 282 (434)
.++ +....+.|..||..+.... .. +......++++++|+++++.. ..+.|.+||. +++.... .. ...+
T Consensus 159 l~v--~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~---~~~~i~~~~~-~g~~~~~~~~~~~~~~ 232 (300)
T 2qc5_A 159 LWF--TENQNNSIGRITNTGKLEEYPLPTNAAAPVGITSGNDGALWFVEI---MGNKIGRITT-TGEISEYDIPTPNARP 232 (300)
T ss_dssp EEE--EETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSSEEEEET---TTTEEEEECT-TCCEEEEECSSTTCCE
T ss_pred EEE--EecCCCeEEEECCCCcEEEeeCCCCCCCcceEEECCCCCEEEEcc---CCCEEEEEcC-CCcEEEEECCCCCCCc
Confidence 444 3444678999998544332 11 234567899999997665443 2358999998 4443332 22 2256
Q ss_pred eEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCcee
Q 013871 283 VTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLF 319 (434)
Q Consensus 283 ~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~~ 319 (434)
..++++++|+.+++... ++.|.+|+.+|...
T Consensus 233 ~~i~~d~~g~l~v~~~~------~~~i~~~~~~g~~~ 263 (300)
T 2qc5_A 233 HAITAGKNSEIWFTEWG------ANQIGRITNDNTIQ 263 (300)
T ss_dssp EEEEECSTTCEEEEETT------TTEEEEECTTSCEE
T ss_pred eEEEECCCCCEEEeccC------CCeEEEECCCCcEE
Confidence 67999999996555544 78999999877644
No 223
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.76 E-value=2.6e-05 Score=70.84 Aligned_cols=248 Identities=8% Similarity=-0.036 Sum_probs=143.0
Q ss_pred CcEEEEecCCeEEEEeCCCCCCc-----eeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCcee
Q 013871 61 EAVACRMATNEIQFFDTTDFPKG-----ILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLA 135 (434)
Q Consensus 61 ~~~la~~~~~~i~v~~~~~~~~~-----~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~ 135 (434)
|.+|..+..+.|+.+++...... ............++|+|+++ .+ +|.. ...+.|..+++.. .....
T Consensus 1 ~~~l~~~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~-~l-y~~d---~~~~~I~~~~~~g---~~~~~ 72 (267)
T 1npe_A 1 GTHLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDK-VV-YWTD---ISEPSIGRASLHG---GEPTT 72 (267)
T ss_dssp CEEEEEEEEEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTT-EE-EEEE---TTTTEEEEEESSS---CCCEE
T ss_pred CcEEEEEcCCeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCC-EE-EEEE---CCCCEEEEEecCC---CCcEE
Confidence 34566665568888887653211 11112233567889998633 32 2222 1235778888754 22211
Q ss_pred eeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEc
Q 013871 136 RRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYG 215 (434)
Q Consensus 136 ~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g 215 (434)
...........+.+++++..|.+. +. +...++.++..+.....+..........++++|++..+.+...
T Consensus 73 ~~~~~~~~p~~ia~d~~~~~lyv~-d~----------~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~ 141 (267)
T 1npe_A 73 IIRQDLGSPEGIALDHLGRTIFWT-DS----------QLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDW 141 (267)
T ss_dssp EECTTCCCEEEEEEETTTTEEEEE-ET----------TTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEEC
T ss_pred EEECCCCCccEEEEEecCCeEEEE-EC----------CCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEEC
Confidence 111111244577888877776553 11 1123566665554322221111245689999998777766432
Q ss_pred cC-CCeEEEEecccceeEEe---CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC-CCceEEEECCC
Q 013871 216 FM-PASATIFNKKCRPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA-ECSVTSEWSPD 290 (434)
Q Consensus 216 ~~-~~~v~l~d~~~~~~~~~---~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~-~~~~~~~wspd 290 (434)
.. .+.|..++..+.....+ ....-+.++++|+++.|.++..++ +.|.++|.+.......... ..+..++ +|
T Consensus 142 ~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~--~~I~~~~~~g~~~~~~~~~~~~P~gi~--~d 217 (267)
T 1npe_A 142 NRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGT--HRAECLNPAQPGRRKVLEGLQYPFAVT--SY 217 (267)
T ss_dssp CSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTT--TEEEEEETTEEEEEEEEECCCSEEEEE--EE
T ss_pred CCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCC--CEEEEEecCCCceEEEecCCCCceEEE--Ee
Confidence 21 45888888875543333 233467899999999888887654 7999999876543333332 2333454 45
Q ss_pred CCEEEEEEcCCceeeCCcEEEEeec-Cceeeeeecc---cceeeEEEcCC
Q 013871 291 GRYFMTATTAPRLQIDNGIKIFHHN-GSLFFKKMFD---KLFQAEWKPVS 336 (434)
Q Consensus 291 g~~l~tas~~prl~~D~~i~iw~~~-g~~~~~~~~~---~~~~~~w~p~~ 336 (434)
+.+|+.+... .+.|.+++.. |+.+...... ..+.+.+.|+.
T Consensus 218 ~~~lyva~~~-----~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~ 262 (267)
T 1npe_A 218 GKNLYYTDWK-----TNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQ 262 (267)
T ss_dssp TTEEEEEETT-----TTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSC
T ss_pred CCEEEEEECC-----CCeEEEEeCCCCCceEEEccccccccceeeecCcc
Confidence 6777777653 6789999985 6766665443 36777777764
No 224
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.76 E-value=8.1e-06 Score=85.89 Aligned_cols=200 Identities=11% Similarity=-0.022 Sum_probs=110.2
Q ss_pred Ceeeec-CCCcEEEEecC--C----eEEEEeCCCC-CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEE
Q 013871 53 PSIRFS-SDEAVACRMAT--N----EIQFFDTTDF-PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYA 124 (434)
Q Consensus 53 ~~~~~S-~d~~~la~~~~--~----~i~v~~~~~~-~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~ 124 (434)
..++|| |||++||...+ + +|+++|+... ... ...+.. ...++.|||++ ..|++...+..+.+..|.+++
T Consensus 177 ~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l-~~~~~~-~~~~~~WspDg-~~l~y~~~d~~~~~~~v~~~~ 253 (751)
T 2xe4_A 177 MEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTI-ADKVSG-TNGEIVWGPDH-TSLFYVTKDETLRENKVWRHV 253 (751)
T ss_dssp EEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCC-CCCEEE-ECSCCEECSST-TEEEEEEECTTCCEEEEEEEE
T ss_pred eeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeC-CccccC-ceeeEEEecCC-CEEEEEEECCCCCCCEEEEEE
Confidence 368999 99999998742 1 5999998875 321 111111 13578999994 555544333334445777787
Q ss_pred cCCCCCCCc--eeeee-ecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceee--eec-C-CCCC
Q 013871 125 CGKDLQSQP--LARRS-FFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGL--VPL-R-KEGP 197 (434)
Q Consensus 125 ~~~~~~~~~--i~~~~-~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~--v~l-~-~~~~ 197 (434)
+.+ .+. ..... ....-...+.|+|||++|++..... +...||++++.+..... ..+ . ..++
T Consensus 254 lgt---~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~---------~~~~l~~~d~~~~~~~~~~~~l~~~~~~~ 321 (751)
T 2xe4_A 254 MGK---LQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSP---------ETAEVHLLDLRKGNAHNTLEIVRPREKGV 321 (751)
T ss_dssp TTS---CGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECS---------SCEEEEEEESSSCTTCCCEEESSCCCTTC
T ss_pred CCC---CchhcEEEEecCCCceEEEEEECCCCCEEEEEecCC---------CCceEEEEECCCCCCCceeEEeecCCCCc
Confidence 755 221 11111 1112245788999999988765321 23468888876542111 222 2 2345
Q ss_pred eEEEEECcCCCEEEEEEccC---CCeEEEEeccc-ceeEE--e-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEc
Q 013871 198 VHDVQWSYSGSEFAVVYGFM---PASATIFNKKC-RPILE--L-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDY 268 (434)
Q Consensus 198 i~~v~wspdg~~~av~~g~~---~~~v~l~d~~~-~~~~~--~-~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~ 268 (434)
..++.|+ +|+.|++.+... ...|..+|+.. ..... + +...+.--.|+++++.|++....+....|+++|+
T Consensus 322 ~~s~~~~-~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 322 RYDVQMH-GTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVRSNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp CEEEEEE-TTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEECSSEEEEEEEETTEEEEEEEEC
T ss_pred eEEEeee-eCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEECCEEEEEEEeCCEEEEEEEec
Confidence 5555554 378888765442 23777778763 22222 2 2222222234455676666554332336777775
No 225
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.75 E-value=3.7e-06 Score=88.54 Aligned_cols=249 Identities=9% Similarity=-0.039 Sum_probs=132.7
Q ss_pred ceEEec-CCCcEEEEEecCCCCCCCcEEEEEcCCC-cEEEE-EeecCcCCCCCCeeeecCCCcEEEEec-C-----CeEE
Q 013871 3 LLLTCL-RVGLIIQTFQKSSTPQEKNVILWKTETG-EAVYQ-LFQKNMTKTTWPSIRFSSDEAVACRMA-T-----NEIQ 73 (434)
Q Consensus 3 ~~l~fS-P~g~~L~t~~~~~~~~d~~v~iWd~~~g-~~~~~-~~~~~~~~~~~~~~~~S~d~~~la~~~-~-----~~i~ 73 (434)
...+|| |||++|+......+.+...|+++|+.+| +.+.. +.. ....+.|||||+.|++.. + ..|.
T Consensus 177 ~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~------~~~~~~WspDg~~l~y~~~d~~~~~~~v~ 250 (751)
T 2xe4_A 177 MEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSG------TNGEIVWGPDHTSLFYVTKDETLRENKVW 250 (751)
T ss_dssp EEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEE------ECSCCEECSSTTEEEEEEECTTCCEEEEE
T ss_pred eeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccC------ceeeEEEecCCCEEEEEEECCCCCCCEEE
Confidence 467899 9999999776544444457999999998 63221 111 123679999998887763 2 2677
Q ss_pred EEeCCCCCCceeeee--ec-CCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCc-eeeeee-cccceeEEE
Q 013871 74 FFDTTDFPKGILYRL--RV-PGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQP-LARRSF-FRCSTVQLN 148 (434)
Q Consensus 74 v~~~~~~~~~~~~~~--~~-~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~-i~~~~~-~~~~~~~~~ 148 (434)
++++........... .. ....++.|||+ +..|++.... .....|.++++.... ... +..+.. .......+.
T Consensus 251 ~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpD-g~~l~~~~~~--~~~~~l~~~d~~~~~-~~~~~~~l~~~~~~~~~s~~ 326 (751)
T 2xe4_A 251 RHVMGKLQSEDVCLYEEHNPLFSAFMYKAAD-TNTLCIGSQS--PETAEVHLLDLRKGN-AHNTLEIVRPREKGVRYDVQ 326 (751)
T ss_dssp EEETTSCGGGCEEEEECCCTTCEEEEEECTT-SSEEEEEEEC--SSCEEEEEEESSSCT-TCCCEEESSCCCTTCCEEEE
T ss_pred EEECCCCchhcEEEEecCCCceEEEEEECCC-CCEEEEEecC--CCCceEEEEECCCCC-CCceeEEeecCCCCceEEEe
Confidence 788765322111111 11 23567899999 5666554432 234577888876521 111 022211 112222333
Q ss_pred ECCCCCeEEEEEEecccccCceeecceeEEEEeeCC-cc-ee-eeecCCCCCeEEEEECcCCCEEEEEEccCCC--eEEE
Q 013871 149 WNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDG-TH-EG-LVPLRKEGPVHDVQWSYSGSEFAVVYGFMPA--SATI 223 (434)
Q Consensus 149 ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~-~~-~~-~v~l~~~~~i~~v~wspdg~~~av~~g~~~~--~v~l 223 (434)
|+ .|..|++.+..+ +. +...|+.++..+ .. .. .++-.....+.++.| +++.+++. ...++ .+.+
T Consensus 327 ~~-~g~~l~~~t~~~----~a---~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~--~~~~lv~~-~~~~g~~~l~~ 395 (751)
T 2xe4_A 327 MH-GTSHLVILTNEG----GA---VNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAV--RSNYLVVA-GRRAGLTRIWT 395 (751)
T ss_dssp EE-TTTEEEEEECTT----TC---TTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEE--CSSEEEEE-EEETTEEEEEE
T ss_pred ee-eCCEEEEEeCCC----CC---CCcEEEEEcCCCcccceeeEECCCCCcEEEEEEE--ECCEEEEE-EEeCCEEEEEE
Confidence 32 378877764322 00 223577777653 11 12 222211123445555 46677664 34455 5667
Q ss_pred Eec-------ccce-eEEe--CC-cCeeEEEE----CCCCCeE-EEEecCCCCCeEEEEEccCCE
Q 013871 224 FNK-------KCRP-ILEL--GS-GPYNTVRW----NPKGKFL-CLAGFGNLPGDMAFWDYVDGK 272 (434)
Q Consensus 224 ~d~-------~~~~-~~~~--~~-~~~~~i~~----SP~g~~l-~~~~~~~~~g~i~iwd~~~~~ 272 (434)
+|+ .+.. ...+ .. ..+..+.+ ++++..+ ++.+.-...+.++.+|+.+++
T Consensus 396 ~dl~~~~~~~~~g~~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~ 460 (751)
T 2xe4_A 396 MMADSQDGVFKAGTGLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHS 460 (751)
T ss_dssp EECCTTTSCCCTTTCCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCC
T ss_pred EecccccccccCCccceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 775 3333 4444 22 22233333 4577644 443333345789999988764
No 226
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=98.74 E-value=2.5e-07 Score=88.86 Aligned_cols=126 Identities=9% Similarity=-0.052 Sum_probs=92.4
Q ss_pred CCCeEEEEECcCCCEEEEEEccCCCeEEEEecccc---eeEEeCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC
Q 013871 195 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR---PILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG 271 (434)
Q Consensus 195 ~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~---~~~~~~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~ 271 (434)
.+ |+.++| |++.+++. .++.|.+||++.. .....+..+++++.+.+.. ++++. .+|.|.+||++++
T Consensus 88 p~-V~~l~f--d~~~L~v~---~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p~--~av~~---~dG~L~v~dl~~~ 156 (388)
T 1xip_A 88 PD-VIFVCF--HGDQVLVS---TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNNT--LVILN---SVNDLSALDLRTK 156 (388)
T ss_dssp TT-EEEEEE--ETTEEEEE---ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSSE--EEEEE---TTSEEEEEETTTC
T ss_pred CC-eeEEEE--CCCEEEEE---cCCcEEEEEchhhhccCccceeecceeeEEecCCC--EEEEE---CCCCEEEEEccCC
Confidence 45 999999 99999974 5689999998522 2222345668888877653 66666 5689999999987
Q ss_pred EEEEEeeCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceee---ee-----------ecccceeeEEEcCCC
Q 013871 272 KQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFF---KK-----------MFDKLFQAEWKPVSP 337 (434)
Q Consensus 272 ~~i~~~~~~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~~~---~~-----------~~~~~~~~~w~p~~~ 337 (434)
..... ...+++++|||+| ++.+.. ||.+++|+..+..+. .. +...+..+.|-+...
T Consensus 157 ~~~~~--~~~Vs~v~WSpkG--~~vg~~------dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~ 226 (388)
T 1xip_A 157 STKQL--AQNVTSFDVTNSQ--LAVLLK------DRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQD 226 (388)
T ss_dssp CEEEE--EESEEEEEECSSE--EEEEET------TSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSE
T ss_pred ccccc--cCCceEEEEcCCc--eEEEEc------CCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCe
Confidence 65542 3478889999999 677777 999999999887752 22 123477888988766
Q ss_pred CCCC
Q 013871 338 DKFG 341 (434)
Q Consensus 338 ~~~~ 341 (434)
.++.
T Consensus 227 flv~ 230 (388)
T 1xip_A 227 FLAV 230 (388)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5544
No 227
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.73 E-value=8.5e-06 Score=78.87 Aligned_cols=241 Identities=9% Similarity=0.050 Sum_probs=131.6
Q ss_pred Eec--CCCcEEEEEecCCCCCCCcEEEEEcCCC----cEEEEEeec----CcCCCCCCeeeecCCCcEEEEe-cC-----
Q 013871 6 TCL--RVGLIIQTFQKSSTPQEKNVILWKTETG----EAVYQLFQK----NMTKTTWPSIRFSSDEAVACRM-AT----- 69 (434)
Q Consensus 6 ~fS--P~g~~L~t~~~~~~~~d~~v~iWd~~~g----~~~~~~~~~----~~~~~~~~~~~~S~d~~~la~~-~~----- 69 (434)
.|| +++++|+.-+- .+.+|.|.|+.+. +.+..+... ......-..+..+||| ++++. ++
T Consensus 88 ~~~~~~~r~~l~v~~l----~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~ 162 (462)
T 2ece_A 88 NGKPNIERRFLIVPGL----RSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEG 162 (462)
T ss_dssp TCCTTCCSCEEEEEBT----TTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCS
T ss_pred ccCCCccCCEEEEccC----CCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCC
Confidence 458 99999987652 4578999999755 555555200 0000011145778999 44444 43
Q ss_pred -CeEEEEeCCCCCCceeeeee-cC-C-eeEEEEeCCCCCeEEE-E----------ecCC--CCCCceEEEEEcCCCCCCC
Q 013871 70 -NEIQFFDTTDFPKGILYRLR-VP-G-VAAFEVSKAPGSHVAV-F----------VPES--KGSPASVQIYACGKDLQSQ 132 (434)
Q Consensus 70 -~~i~v~~~~~~~~~~~~~~~-~~-~-v~~~~~sp~~~~~ia~-~----------~~~~--~~~~~~v~i~~~~~~~~~~ 132 (434)
+.|.++|..++......... .+ . -.++.|+|+.+.++.. | .++. .....+|.+|++.. .+
T Consensus 163 ~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~---~k 239 (462)
T 2ece_A 163 PGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRK---RK 239 (462)
T ss_dssp CCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTT---TE
T ss_pred CCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCC---Cc
Confidence 58999999876643222211 11 1 2357889986533322 1 0000 01246899999987 55
Q ss_pred ceeeeeecc--cceeEE--EECCCCCeEEEEEEecc-cccCcee---eccee---EEEEeeCCcc-eeeee-cCC-----
Q 013871 133 PLARRSFFR--CSTVQL--NWNRGSTGLLAVAQSDV-DKTNQSY---YGESK---LNYLTTDGTH-EGLVP-LRK----- 194 (434)
Q Consensus 133 ~i~~~~~~~--~~~~~~--~ws~~G~~l~~~~~~~~-d~~~~~~---~g~~~---l~~l~~~~~~-~~~v~-l~~----- 194 (434)
.+.++.... .....+ .++|+|+++.+....+. |.++..+ +.... +..+++.... ...++ +..
T Consensus 240 ~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~ 319 (462)
T 2ece_A 240 RIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAV 319 (462)
T ss_dssp EEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEE
T ss_pred EeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccC
Confidence 555555421 122233 45999998877654111 1111111 00000 0111111100 00000 000
Q ss_pred CCCeEEEEECcCCCEEEEEEccCCCeEEEEecc----cceeEEeCCc----------------CeeEEEECCCCCeEEEE
Q 013871 195 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK----CRPILELGSG----------------PYNTVRWNPKGKFLCLA 254 (434)
Q Consensus 195 ~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~----~~~~~~~~~~----------------~~~~i~~SP~g~~l~~~ 254 (434)
.....++.+||||+++.+ +....+.|.+||+. ...+..+..+ .-..+.+||||++|+++
T Consensus 320 ~~~pa~I~lS~DGrfLYV-Snrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVa 398 (462)
T 2ece_A 320 PPLVTDIDISLDDKFLYL-SLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVT 398 (462)
T ss_dssp CCCCCCEEECTTSCEEEE-EETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEE
T ss_pred CCceeEEEECCCCCEEEE-EeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEE
Confidence 245678999999999887 45667799999974 2233333222 13679999999999988
Q ss_pred e
Q 013871 255 G 255 (434)
Q Consensus 255 ~ 255 (434)
.
T Consensus 399 N 399 (462)
T 2ece_A 399 N 399 (462)
T ss_dssp C
T ss_pred c
Confidence 6
No 228
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.70 E-value=2.2e-05 Score=72.85 Aligned_cols=226 Identities=11% Similarity=0.021 Sum_probs=127.1
Q ss_pred ceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC-CeEEEEeCCCCC
Q 013871 3 LLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT-NEIQFFDTTDFP 81 (434)
Q Consensus 3 ~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~-~~i~v~~~~~~~ 81 (434)
....|+|+|++|+.... .++.|..|+. +|+ +..+.... .....+.|++||+++++... +.|.+|+.. ..
T Consensus 48 egp~~~~~g~~l~~~d~----~~~~i~~~~~-~g~-~~~~~~~~---~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~ 117 (305)
T 3dr2_A 48 EGPAWWEAQRTLVWSDL----VGRRVLGWRE-DGT-VDVLLDAT---AFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQ 117 (305)
T ss_dssp EEEEEEGGGTEEEEEET----TTTEEEEEET-TSC-EEEEEESC---SCEEEEEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred cCCeEeCCCCEEEEEEC----CCCEEEEEeC-CCC-EEEEeCCC---CccceeeECCCCCEEEEECCCCEEEEECCC-CC
Confidence 46789999997665552 4578999997 565 34444332 33447899999998877644 689999875 22
Q ss_pred Cceeeeee-----cCCeeEEEEeCCCCCeEEEEec--CC-----------CCCCceEEEEEcCCCCCCCceeeeeecccc
Q 013871 82 KGILYRLR-----VPGVAAFEVSKAPGSHVAVFVP--ES-----------KGSPASVQIYACGKDLQSQPLARRSFFRCS 143 (434)
Q Consensus 82 ~~~~~~~~-----~~~v~~~~~sp~~~~~ia~~~~--~~-----------~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~ 143 (434)
. ...... ...+.++.++|++. +... .+ .. ....+.|..++..+ ++. .... ....
T Consensus 118 ~-~~~~~~~~~~~~~~~~~i~~d~dG~-l~~t-d~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~---g~~-~~~~-~~~~ 189 (305)
T 3dr2_A 118 A-HLLVGRYAGKRLNSPNDLIVARDGA-IWFT-DPPFGLRKPSQGCPADPELAHHSVYRLPPDG---SPL-QRMA-DLDH 189 (305)
T ss_dssp E-EEEECEETTEECSCCCCEEECTTSC-EEEE-CCSGGGSCGGGSCCCCCSSSCEEEEEECSSS---CCC-EEEE-EESS
T ss_pred E-EEEEeccCCCccCCCCCEEECCCCC-EEEe-CcCCCccccccccccccccCCCeEEEEcCCC---CcE-EEEe-cCCC
Confidence 1 111111 22456788999853 2211 11 00 00113344444323 222 2222 2233
Q ss_pred eeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcc--eeeeecC-CCCCeEEEEECcCCCEEEEEEccCCCe
Q 013871 144 TVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH--EGLVPLR-KEGPVHDVQWSYSGSEFAVVYGFMPAS 220 (434)
Q Consensus 144 ~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~--~~~v~l~-~~~~i~~v~wspdg~~~av~~g~~~~~ 220 (434)
...+.|+|+|+.|++.. ..... .+...|+.+++.+.. ...+... ..+....+++.++|+.++ +. ...
T Consensus 190 p~gl~~spdg~~lyv~~-~~~~~-----~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv---~~-~~g 259 (305)
T 3dr2_A 190 PNGLAFSPDEQTLYVSQ-TPEQG-----HGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWS---SS-GTG 259 (305)
T ss_dssp EEEEEECTTSSEEEEEE-CCC--------CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEE---CC-SSE
T ss_pred CcceEEcCCCCEEEEEe-cCCcC-----CCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEE---ec-CCc
Confidence 45789999999876642 21100 011235555443321 0111111 134456789999998444 33 346
Q ss_pred EEEEecccceeEEeC-CcCeeEEEECCCCCeEEEEec
Q 013871 221 ATIFNKKCRPILELG-SGPYNTVRWNPKGKFLCLAGF 256 (434)
Q Consensus 221 v~l~d~~~~~~~~~~-~~~~~~i~~SP~g~~l~~~~~ 256 (434)
|.+||.++..+..+. ...+..++|+|+++.|.+++.
T Consensus 260 v~~~~~~g~~~~~~~~~~~~~~~~f~~d~~~L~it~~ 296 (305)
T 3dr2_A 260 VCVFDSDGQLLGHIPTPGTASNCTFDQAQQRLFITGG 296 (305)
T ss_dssp EEEECTTSCEEEEEECSSCCCEEEECTTSCEEEEEET
T ss_pred EEEECCCCCEEEEEECCCceeEEEEeCCCCEEEEEcC
Confidence 999999877766552 235788999999998888763
No 229
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.68 E-value=7.9e-06 Score=79.54 Aligned_cols=198 Identities=8% Similarity=0.008 Sum_probs=115.9
Q ss_pred cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCc
Q 013871 90 VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQ 169 (434)
Q Consensus 90 ~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~ 169 (434)
+.....++|+|++. + |+.+. ....|++|+... +........ ..... +.|+++|..|++.. .+
T Consensus 130 ~~~P~~la~d~~g~-l---yv~d~--~~~~I~~id~~~---g~~~~~~~~-~~~~~-ia~~~~g~~l~~~d---~~---- 191 (409)
T 3hrp_A 130 FKYMWGIAAVGNNT-V---LAYQR--DDPRVRLISVDD---NKVTTVHPG-FKGGK-PAVTKDKQRVYSIG---WE---- 191 (409)
T ss_dssp CCCEEEEEECSTTE-E---EEEET--TTTEEEEEETTT---TEEEEEEET-CCBCB-CEECTTSSEEEEEB---SS----
T ss_pred cCCceEEEEeCCCC-E---EEEec--CCCcEEEEECCC---CEEEEeecc-CCCCc-eeEecCCCcEEEEe---cC----
Confidence 34577888988742 2 22221 345888998865 332222222 22233 89999999765531 11
Q ss_pred eeecceeEEEEeeCCccee-ee-e--cCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeEEe------CC-c-
Q 013871 170 SYYGESKLNYLTTDGTHEG-LV-P--LRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL------GS-G- 237 (434)
Q Consensus 170 ~~~g~~~l~~l~~~~~~~~-~v-~--l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~~------~~-~- 237 (434)
+...++.++..+.... .+ . ......+++++++|++..|.+ ...++.|..||........+ +. .
T Consensus 192 ---~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv--~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~ 266 (409)
T 3hrp_A 192 ---GTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYF--VDSNKNFGRFNVKTQEVTLIKQLELSGSLGT 266 (409)
T ss_dssp ---TTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEE--ECTTCEEEEEETTTCCEEEEEECCCCSCCCC
T ss_pred ---CCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEE--EECCCcEEEEECCCCCEEEEecccccCCCCC
Confidence 1113566665443321 11 0 112456789999996666665 33467899999875443332 11 1
Q ss_pred -CeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC---------------CCceEEEECCCCCEEEEEE-cC
Q 013871 238 -PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA---------------ECSVTSEWSPDGRYFMTAT-TA 300 (434)
Q Consensus 238 -~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~---------------~~~~~~~wspdg~~l~tas-~~ 300 (434)
|.+.++|+|++..|.++... .+.|+.||.+.......-.. ..+..++++|+|+.+++-+ .
T Consensus 267 ~P~~~ia~~p~~g~lyv~d~~--~~~I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~- 343 (409)
T 3hrp_A 267 NPGPYLIYYFVDSNFYMSDQN--LSSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFK- 343 (409)
T ss_dssp SSCCEEEEETTTTEEEEEETT--TTEEEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTT-
T ss_pred CccccEEEeCCCCEEEEEeCC--CCEEEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCC-
Confidence 22489999976666666543 37899999765421111110 1355699999999666555 5
Q ss_pred CceeeCCcEEEEe-ecCce
Q 013871 301 PRLQIDNGIKIFH-HNGSL 318 (434)
Q Consensus 301 prl~~D~~i~iw~-~~g~~ 318 (434)
++.|+.|+ -+|.+
T Consensus 344 -----~~~I~~~~~~~G~v 357 (409)
T 3hrp_A 344 -----GYCLRKLDILDGYV 357 (409)
T ss_dssp -----TCEEEEEETTTTEE
T ss_pred -----CCEEEEEECCCCEE
Confidence 88999999 45654
No 230
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=98.67 E-value=3.3e-06 Score=81.05 Aligned_cols=215 Identities=13% Similarity=0.068 Sum_probs=136.0
Q ss_pred CCCeeeecCCCcEEEEecCCeEEEEeCCCCC---------CceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEE
Q 013871 51 TWPSIRFSSDEAVACRMATNEIQFFDTTDFP---------KGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQ 121 (434)
Q Consensus 51 ~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~---------~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~ 121 (434)
.+..+++++...+++.++.+.+.+|++.+.. ........++.|..++| + +..+++- ..+.|.
T Consensus 39 ~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~V~~l~f--d-~~~L~v~------~~~~l~ 109 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKEIPDVIFVCF--H-GDQVLVS------TRNALY 109 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEECTTEEEEEE--E-TTEEEEE------ESSEEE
T ss_pred cccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEeeCCCeeEEEE--C-CCEEEEE------cCCcEE
Confidence 4568999999999999988899999965422 11123344566999999 4 5666553 236899
Q ss_pred EEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEE
Q 013871 122 IYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDV 201 (434)
Q Consensus 122 i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v 201 (434)
+|++.+. ........+...+..+.|.+.. ++++. . | | .|+.+++...... .+ ...|.++
T Consensus 110 v~dv~sl---~~~~~~~~~~~~v~~i~~~~p~--~av~~-~--d-------G--~L~v~dl~~~~~~--~~--~~~Vs~v 168 (388)
T 1xip_A 110 SLDLEEL---SEFRTVTSFEKPVFQLKNVNNT--LVILN-S--V-------N--DLSALDLRTKSTK--QL--AQNVTSF 168 (388)
T ss_dssp EEESSST---TCEEEEEECSSCEEEEEECSSE--EEEEE-T--T-------S--EEEEEETTTCCEE--EE--EESEEEE
T ss_pred EEEchhh---hccCccceeecceeeEEecCCC--EEEEE-C--C-------C--CEEEEEccCCccc--cc--cCCceEE
Confidence 9999874 2333444556667777777652 44332 1 1 1 3566665543222 22 3589999
Q ss_pred EECcCCCEEEEEEccCCCeEEEEeccccee---EEe-----------CCcCeeEEEECCCCCeEEEEecCC---C-----
Q 013871 202 QWSYSGSEFAVVYGFMPASATIFNKKCRPI---LEL-----------GSGPYNTVRWNPKGKFLCLAGFGN---L----- 259 (434)
Q Consensus 202 ~wspdg~~~av~~g~~~~~v~l~d~~~~~~---~~~-----------~~~~~~~i~~SP~g~~l~~~~~~~---~----- 259 (434)
+|||+| ++ .|..++++.+|+..+..+ ..+ |...+.+|.|.+++.++++-+... .
T Consensus 169 ~WSpkG--~~--vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~~~~~~~~~~~~~ 244 (388)
T 1xip_A 169 DVTNSQ--LA--VLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFGNVISETDDEVSY 244 (388)
T ss_dssp EECSSE--EE--EEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEECCCCSSCSSCCC
T ss_pred EEcCCc--eE--EEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEcCCCCCcCcccCC
Confidence 999999 44 367789999998876553 334 457789999999999998754322 1
Q ss_pred CCeEEEEEccCCEE-EEEeeC-----------C--Cc-eEEEECCCCCEEEEEEc
Q 013871 260 PGDMAFWDYVDGKQ-LGTTRA-----------E--CS-VTSEWSPDGRYFMTATT 299 (434)
Q Consensus 260 ~g~i~iwd~~~~~~-i~~~~~-----------~--~~-~~~~wspdg~~l~tas~ 299 (434)
+-.++|.....+.. ...+.. + .. ..-.|.|+.+.|+..++
T Consensus 245 ~~~~~ii~~~~~~~~f~~~~d~~~~fg~~~R~~~~~~~~l~~w~~~~~~l~iv~S 299 (388)
T 1xip_A 245 DQKMYIIKHIDGSASFQETFDITPPFGQIVRFPYMYKVTLSGLIEPDANVNVLAS 299 (388)
T ss_dssp CEEEEEEEEETTEEEEEEESSSCCCCCCSCCCCCEEEEEEEEEEETTEEEEEEEE
T ss_pred cceEEEEEcCCCCceeEccccCcCCcCCccCCceeeeeehhcccccCCcEEEEeC
Confidence 22577777444432 122211 1 11 11589888877665554
No 231
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.52 E-value=4.4e-06 Score=83.62 Aligned_cols=267 Identities=6% Similarity=-0.014 Sum_probs=158.6
Q ss_pred cEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcC------------------------------C------CCCCee
Q 013871 12 LIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMT------------------------------K------TTWPSI 55 (434)
Q Consensus 12 ~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~------------------------------~------~~~~~~ 55 (434)
.|...|+ +...+.|+|+-+-+++++..+.-.+.. . ..-+.+
T Consensus 14 ~~~~f~s---~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~ 90 (595)
T 1fwx_A 14 DYYGFWS---SGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHV 90 (595)
T ss_dssp SEEEEEC---CBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCE
T ss_pred cEEEEee---CCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCcc
Confidence 4666666 345689999999999988776532210 0 011234
Q ss_pred eecC-----CCcEEEEec--CCeEEEEeCCCCCCceeeeeec-CCeeEEEE-e-CCCCCeEEEE---e--cCC-------
Q 013871 56 RFSS-----DEAVACRMA--TNEIQFFDTTDFPKGILYRLRV-PGVAAFEV-S-KAPGSHVAVF---V--PES------- 113 (434)
Q Consensus 56 ~~S~-----d~~~la~~~--~~~i~v~~~~~~~~~~~~~~~~-~~v~~~~~-s-p~~~~~ia~~---~--~~~------- 113 (434)
..|. ||+++.... ++.|.+.|+..+.......+.. .+...+.+ + |+++..++.- . +..
T Consensus 91 ~~s~t~g~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~ 170 (595)
T 1fwx_A 91 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV 170 (595)
T ss_dssp EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred ccCCCCCCcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccc
Confidence 4454 888887763 4589999999876433334432 45778887 5 7744433221 1 110
Q ss_pred CCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceee-----cceeEEEEeeCCccee
Q 013871 114 KGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYY-----GESKLNYLTTDGTHEG 188 (434)
Q Consensus 114 ~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~-----g~~~l~~l~~~~~~~~ 188 (434)
....+.+.+.+..+ .+.+.+...-. .--.+..+|+|+++.+...... .+.... -...+..++....
T Consensus 171 ~~~~~~vtvID~~t---~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se--~~~~i~~~~~~~~d~v~V~~~~~~--- 241 (595)
T 1fwx_A 171 ANYVNVFTAVDADK---WEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSE--KGMTLPEMTAAEMDHIVVFNIAEI--- 241 (595)
T ss_dssp GGEEEEEEEEETTT---TEEEEEEEESS-CCCCEEECSSSSEEEEEESCTT--CCSSHHHHTCCSEEEEEEEEHHHH---
T ss_pred cccCceEEEEECCC---CeEEEEEEeCC-CccceEECCCCCEEEEEecCcc--cCcchhhccccccceEEEeeccce---
Confidence 12235788888876 66666665433 3345678999998765432110 000000 0001111111100
Q ss_pred eeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc---ce-eEEeC-CcCeeEEEECCCCCeEEEEecCCCCCeE
Q 013871 189 LVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC---RP-ILELG-SGPYNTVRWNPKGKFLCLAGFGNLPGDM 263 (434)
Q Consensus 189 ~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~---~~-~~~~~-~~~~~~i~~SP~g~~l~~~~~~~~~g~i 263 (434)
.++.++|+...+ +.|.+.|.+. .. +..+. ...-.++.+||||+++++++.+ ..+|
T Consensus 242 ------------~~~v~~Gk~~~i------~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~--s~~V 301 (595)
T 1fwx_A 242 ------------EKAIAAGDYQEL------NGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKL--SPTV 301 (595)
T ss_dssp ------------HHHHHHTCSEEE------TTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTT--SSBE
T ss_pred ------------eEeccCCCeeEE------CcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCC--CCeE
Confidence 013456665443 3599999875 23 33332 2344689999999999998754 3799
Q ss_pred EEEEccCCE------------EEEEee-CCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecC
Q 013871 264 AFWDYVDGK------------QLGTTR-AECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG 316 (434)
Q Consensus 264 ~iwd~~~~~------------~i~~~~-~~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g 316 (434)
.++|+.+.+ .+.... +.....++|+||| ++.++..- |+.|.+|++..
T Consensus 302 sVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG-~aY~t~~l-----dsqV~kwdi~~ 361 (595)
T 1fwx_A 302 TVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRG-NAYTSLFL-----DSQVVKWNIED 361 (595)
T ss_dssp EEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTTS-EEEEEETT-----TTEEEEEEHHH
T ss_pred EEEECcccccccccccCcccceEEEcCCCCCcceEEECCCC-eEEEEEec-----CCcEEEEEhhH
Confidence 999999653 344443 3478889999999 66665542 99999999965
No 232
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.21 E-value=0.00029 Score=66.45 Aligned_cols=180 Identities=8% Similarity=0.001 Sum_probs=105.6
Q ss_pred cceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcc-eeeeecCC-----CCCeEEEEECcCCCEEEEEEc
Q 013871 142 CSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH-EGLVPLRK-----EGPVHDVQWSYSGSEFAVVYG 215 (434)
Q Consensus 142 ~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~-~~~v~l~~-----~~~i~~v~wspdg~~~av~~g 215 (434)
.....+.++++|+ |.++ +..... .+...|+.++...+. ...+.+.. ...+++++++|++..+.+ +.
T Consensus 67 ~~p~gv~~d~~g~-L~v~-D~g~~~-----~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yv-td 138 (343)
T 2qe8_A 67 DTVLGIKSDGNGI-VWML-DNGNQS-----KSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYI-SD 138 (343)
T ss_dssp SCEEEEEECSSSE-EEEE-ECHHHH-----TSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEE-EE
T ss_pred eEeeEEEEcCCCc-EEEE-cCCCCc-----CCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEE-Ec
Confidence 3556788899876 4332 221000 012246666655332 33334321 235689999987665554 44
Q ss_pred c---CCCeEEEEecccceeEE-eCC-------------------------------cCeeEEEECCCCCeEEEEecCCCC
Q 013871 216 F---MPASATIFNKKCRPILE-LGS-------------------------------GPYNTVRWNPKGKFLCLAGFGNLP 260 (434)
Q Consensus 216 ~---~~~~v~l~d~~~~~~~~-~~~-------------------------------~~~~~i~~SP~g~~l~~~~~~~~~ 260 (434)
. ..+.|.+||+....+.. ++. ...+.|+|||+|+.|+++....
T Consensus 139 ~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~-- 216 (343)
T 2qe8_A 139 PAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHS-- 216 (343)
T ss_dssp CCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSC--
T ss_pred CccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCC--
Confidence 4 56799999986332222 211 1257899999999888887432
Q ss_pred CeEEEEEcc---CCE--------EEEEe-eCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceeeeee---c
Q 013871 261 GDMAFWDYV---DGK--------QLGTT-RAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKKM---F 324 (434)
Q Consensus 261 g~i~iwd~~---~~~--------~i~~~-~~~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~-~g~~~~~~~---~ 324 (434)
..|+.+|.. .+. .+... ....+..++++++|+.+++... ++.|.+|+. +|+...... .
T Consensus 217 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~------~~~V~~~d~~~G~~~~~~~~~~~ 290 (343)
T 2qe8_A 217 TSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLA------HSAIGVITSADRAYKLLVTDEKL 290 (343)
T ss_dssp SEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGG------GTEEEEEETTTTEEEEEEECGGG
T ss_pred CeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccC------CCeEEEEECCCCCEEEEEECCce
Confidence 367766643 110 01111 1123345899999998888777 899999999 887533222 2
Q ss_pred ccceeeEEEcCCC
Q 013871 325 DKLFQAEWKPVSP 337 (434)
Q Consensus 325 ~~~~~~~w~p~~~ 337 (434)
.....+++.|++.
T Consensus 291 ~~p~~va~~~~g~ 303 (343)
T 2qe8_A 291 SWTDSFNFGSDGY 303 (343)
T ss_dssp SCEEEEEECTTSC
T ss_pred ecCCeeEECCCCc
Confidence 3356778887654
No 233
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.13 E-value=0.001 Score=68.87 Aligned_cols=58 Identities=17% Similarity=0.276 Sum_probs=45.5
Q ss_pred CeEEEEEccCCEEEEEeeCCC-ceEEEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceeeeeec
Q 013871 261 GDMAFWDYVDGKQLGTTRAEC-SVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKKMF 324 (434)
Q Consensus 261 g~i~iwd~~~~~~i~~~~~~~-~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~-~g~~~~~~~~ 324 (434)
|.|..||+.+++.+..+.... .....++.+|..+++++. |+.+++||. +|+++.....
T Consensus 457 g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~g~~v~~g~~------dg~l~a~D~~tG~~lw~~~~ 516 (677)
T 1kb0_A 457 GRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTA------DGRLVAYHAATGEKLWEAPT 516 (677)
T ss_dssp EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECT------TSEEEEEETTTCCEEEEEEC
T ss_pred cEEEEEeCCCCcEEeecCCCCCCcCcceEeCCCEEEEECC------CCcEEEEECCCCceeeeeeC
Confidence 789999999999988876542 233456678888888877 999999997 6888776644
No 234
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.11 E-value=0.00092 Score=60.46 Aligned_cols=194 Identities=7% Similarity=0.028 Sum_probs=112.3
Q ss_pred ceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe--cCCeEEEEeCCCC
Q 013871 3 LLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM--ATNEIQFFDTTDF 80 (434)
Q Consensus 3 ~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~--~~~~i~v~~~~~~ 80 (434)
..|.|+|||...++.+.+ .+..|.+.|+.+|+.+.++.... ... ...++.++..|..+ .++.+.++|..++
T Consensus 24 ~Gl~~~~dg~Lyvstg~~---~~s~v~~iD~~tg~v~~~i~l~~---~~f-geGi~~~g~~lyv~t~~~~~v~viD~~t~ 96 (266)
T 2iwa_A 24 QGLVYAENDTLFESTGLY---GRSSVRQVALQTGKVENIHKMDD---SYF-GEGLTLLNEKLYQVVWLKNIGFIYDRRTL 96 (266)
T ss_dssp EEEEECSTTEEEEEECST---TTCEEEEEETTTCCEEEEEECCT---TCC-EEEEEEETTEEEEEETTCSEEEEEETTTT
T ss_pred ccEEEeCCCeEEEECCCC---CCCEEEEEECCCCCEEEEEecCC---Ccc-eEEEEEeCCEEEEEEecCCEEEEEECCCC
Confidence 478999997555544321 35789999999999998876532 111 22334445444444 4689999999876
Q ss_pred CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeeccc-----ceeEEEECCCCCe
Q 013871 81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRC-----STVQLNWNRGSTG 155 (434)
Q Consensus 81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~-----~~~~~~ws~~G~~ 155 (434)
.. ..++....-....++++++..+. .+ + .+.|.+++..+ .+.+........ ....+.|. +| .
T Consensus 97 ~v--~~~i~~g~~~g~glt~Dg~~l~v---s~--g-s~~l~viD~~t---~~v~~~I~Vg~~~~p~~~~nele~~-dg-~ 163 (266)
T 2iwa_A 97 SN--IKNFTHQMKDGWGLATDGKILYG---SD--G-TSILYEIDPHT---FKLIKKHNVKYNGHRVIRLNELEYI-NG-E 163 (266)
T ss_dssp EE--EEEEECCSSSCCEEEECSSSEEE---EC--S-SSEEEEECTTT---CCEEEEEECEETTEECCCEEEEEEE-TT-E
T ss_pred cE--EEEEECCCCCeEEEEECCCEEEE---EC--C-CCeEEEEECCC---CcEEEEEEECCCCcccccceeEEEE-CC-E
Confidence 53 23343331123446667444332 22 2 46888888876 455555443221 22355666 55 4
Q ss_pred EEEEEEecccccCceeecceeEEEEeeCCcc-eeeeecC------------CCCCeEEEEECcCCCEEEEEEccCCCeEE
Q 013871 156 LLAVAQSDVDKTNQSYYGESKLNYLTTDGTH-EGLVPLR------------KEGPVHDVQWSYSGSEFAVVYGFMPASAT 222 (434)
Q Consensus 156 l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~-~~~v~l~------------~~~~i~~v~wspdg~~~av~~g~~~~~v~ 222 (434)
|.+. . +....+..++..... ...+.+. .....+.++|+|++++|.| ++..-.++.
T Consensus 164 lyvn--~---------~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfV-Tgk~~~~v~ 231 (266)
T 2iwa_A 164 VWAN--I---------WQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFV-TGKLWPKLF 231 (266)
T ss_dssp EEEE--E---------TTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEE-EETTCSEEE
T ss_pred EEEe--c---------CCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEE-ECCCCCeEE
Confidence 3321 1 112246666664432 2334332 0135589999999998887 566566888
Q ss_pred EEeccc
Q 013871 223 IFNKKC 228 (434)
Q Consensus 223 l~d~~~ 228 (434)
..++..
T Consensus 232 ~i~l~~ 237 (266)
T 2iwa_A 232 EIKLHL 237 (266)
T ss_dssp EEEEEE
T ss_pred EEEEec
Confidence 877643
No 235
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.06 E-value=0.0033 Score=65.14 Aligned_cols=76 Identities=13% Similarity=0.272 Sum_probs=54.3
Q ss_pred CeEEEEeccc-ceeEEe-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCC---ceEEEECCCCCE
Q 013871 219 ASATIFNKKC-RPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAEC---SVTSEWSPDGRY 293 (434)
Q Consensus 219 ~~v~l~d~~~-~~~~~~-~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~---~~~~~wspdg~~ 293 (434)
+.|..||+++ +.+-++ +..+.....++.+|.++++++ .+|.+++||.++++.+..+..+. ..-+.|++||+.
T Consensus 457 g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~g~~v~~g~---~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~ 533 (677)
T 1kb0_A 457 GRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGT---ADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQ 533 (677)
T ss_dssp EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEEC---TTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred cEEEEEeCCCCcEEeecCCCCCCcCcceEeCCCEEEEEC---CCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEE
Confidence 5788899864 444444 234455566777888888876 66899999999999999887542 223788899986
Q ss_pred EEEE
Q 013871 294 FMTA 297 (434)
Q Consensus 294 l~ta 297 (434)
++..
T Consensus 534 ~v~~ 537 (677)
T 1kb0_A 534 YVSV 537 (677)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6554
No 236
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.05 E-value=0.0041 Score=59.66 Aligned_cols=223 Identities=7% Similarity=-0.034 Sum_probs=117.4
Q ss_pred CCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe--cCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCC
Q 013871 25 EKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM--ATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAP 102 (434)
Q Consensus 25 d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~--~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~ 102 (434)
...|+..++..+......... .....++|.+.+..|... ..+.|+.++...................+++.+.+
T Consensus 95 ~~~I~~i~~~~~~~~~~~~~~----~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~ 170 (386)
T 3v65_B 95 RIDIRQVLPHRSEYTLLLNNL----ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVH 170 (386)
T ss_dssp BSCEEEECTTSCCCEEEECSC----SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTT
T ss_pred CccceeeccCCCcEEEEecCC----CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCC
Confidence 356777787655432222211 223378999766655544 45799999987533211111122345667777753
Q ss_pred CCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEee
Q 013871 103 GSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTT 182 (434)
Q Consensus 103 ~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~ 182 (434)
+. | +|... ....|.++++.. ..........-.....+...|.+..|.+. .. .. ...|+.++.
T Consensus 171 g~-l-Y~~d~---~~~~I~~~~~dg---~~~~~l~~~~l~~P~giavdp~~g~ly~t-d~--~~-------~~~I~r~~~ 232 (386)
T 3v65_B 171 DK-L-YWTDS---GTSRIEVANLDG---AHRKVLLWQSLEKPRAIALHPMEGTIYWT-DW--GN-------TPRIEASSM 232 (386)
T ss_dssp TE-E-EEEET---TTTEEEECBTTS---CSCEEEECSSCSCEEEEEEETTTTEEEEE-EC--SS-------SCEEEEEET
T ss_pred Ce-E-EEEcC---CCCeEEEEeCCC---CceEEeecCCCCCCcEEEEEcCCCeEEEe-cc--CC-------CCEEEEEeC
Confidence 32 2 22222 123566655543 11111111111233567778877766542 11 11 134777777
Q ss_pred CCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeEEe---CCcCeeEEEECCCCCeEEEEecCCC
Q 013871 183 DGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL---GSGPYNTVRWNPKGKFLCLAGFGNL 259 (434)
Q Consensus 183 ~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~~---~~~~~~~i~~SP~g~~l~~~~~~~~ 259 (434)
.+.....+....-..-+.++|+|++..|.++ ....+.|..+|+.+.....+ ....-..|++ ++..|.++..++
T Consensus 233 dG~~~~~~~~~~~~~PnGlavd~~~~~lY~a-D~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav--~~~~ly~td~~~- 308 (386)
T 3v65_B 233 DGSGRRIIADTHLFWPNGLTIDYAGRRMYWV-DAKHHVIERANLDGSHRKAVISQGLPHPFAITV--FEDSLYWTDWHT- 308 (386)
T ss_dssp TSCSCEEEECSSCSCEEEEEEEGGGTEEEEE-ETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE--ETTEEEEEETTT-
T ss_pred CCCCcEEEEECCCCCeeeEEEeCCCCEEEEE-ECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE--ECCEEEEeeCCC-
Confidence 7653333222222346789999988888874 44567999999876443333 2223345666 344555555443
Q ss_pred CCeEEEEEccCCEEE
Q 013871 260 PGDMAFWDYVDGKQL 274 (434)
Q Consensus 260 ~g~i~iwd~~~~~~i 274 (434)
+.|..+|..+++.+
T Consensus 309 -~~V~~~~~~~G~~~ 322 (386)
T 3v65_B 309 -KSINSANKFTGKNQ 322 (386)
T ss_dssp -TEEEEEETTTCCSC
T ss_pred -CeEEEEECCCCcce
Confidence 57777775555433
No 237
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.03 E-value=0.01 Score=56.08 Aligned_cols=220 Identities=7% Similarity=-0.020 Sum_probs=116.7
Q ss_pred CcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe--cCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCC
Q 013871 26 KNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM--ATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPG 103 (434)
Q Consensus 26 ~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~--~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 103 (434)
..|+..++..... ..+... . .....++|.+.+..|... ..+.|+.++...................+++.+.++
T Consensus 53 ~~I~~i~~~g~~~-~~~~~~-~--~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g 128 (349)
T 3v64_C 53 IDIRQVLPHRSEY-TLLLNN-L--ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHD 128 (349)
T ss_dssp SCEEEECTTSCCE-EEEECS-C--SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTT
T ss_pred cceEEEeCCCCee-EEeecC-C--CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCC
Confidence 4577777655443 222221 1 223378999866655544 357999999876432121111233456778877533
Q ss_pred CeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeC
Q 013871 104 SHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTD 183 (434)
Q Consensus 104 ~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~ 183 (434)
. | +|... ....|.+.++.. ..........-.....+...|.+..|.+. +. .. ...|+.++.+
T Consensus 129 ~-l-y~~d~---~~~~I~~~~~dG---~~~~~l~~~~l~~P~~iavdp~~g~ly~t-d~--~~-------~~~I~r~~~d 190 (349)
T 3v64_C 129 K-L-YWTDS---GTSRIEVANLDG---AHRKVLLWQSLEKPRAIALHPMEGTIYWT-DW--GN-------TPRIEASSMD 190 (349)
T ss_dssp E-E-EEEET---TTTEEEEEETTS---CSCEEEECTTCSCEEEEEEETTTTEEEEE-EC--SS-------SCEEEEEETT
T ss_pred e-E-EEEcC---CCCeEEEEcCCC---CceEEEEeCCCCCcceEEEecCcCeEEEe-cc--CC-------CCEEEEEeCC
Confidence 2 2 23222 234677777654 11111111111234567788877766542 11 11 1347777777
Q ss_pred CcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeEEe---CCcCeeEEEECCCCCeEEEEecCCCC
Q 013871 184 GTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLP 260 (434)
Q Consensus 184 ~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~~---~~~~~~~i~~SP~g~~l~~~~~~~~~ 260 (434)
|.....+....-..-+.++|+|++..+.++ ....+.|..+|+.+.....+ ....-..|++ ++..|.++..++
T Consensus 191 G~~~~~~~~~~~~~PnGla~d~~~~~lY~a-D~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav--~~~~ly~td~~~-- 265 (349)
T 3v64_C 191 GSGRRIIADTHLFWPNGLTIDYAGRRMYWV-DAKHHVIERANLDGSHRKAVISQGLPHPFAITV--FEDSLYWTDWHT-- 265 (349)
T ss_dssp SCSCEESCCSSCSCEEEEEEETTTTEEEEE-ETTTTEEEEEETTSCSCEEEECSSCSSEEEEEE--ETTEEEEEETTT--
T ss_pred CCCcEEEEECCCCCcceEEEeCCCCEEEEE-ECCCCEEEEEeCCCCceEEEEeCCCCCceEEEE--ECCEEEEecCCC--
Confidence 653222211123345789999988888874 44567999999876543333 2223345555 334555555443
Q ss_pred CeEEEEEccCCE
Q 013871 261 GDMAFWDYVDGK 272 (434)
Q Consensus 261 g~i~iwd~~~~~ 272 (434)
+.|..+|..+++
T Consensus 266 ~~V~~~~~~~G~ 277 (349)
T 3v64_C 266 KSINSANKFTGK 277 (349)
T ss_dssp TEEEEEETTTCC
T ss_pred CeEEEEEccCCC
Confidence 567766655543
No 238
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.01 E-value=0.012 Score=56.44 Aligned_cols=233 Identities=9% Similarity=-0.101 Sum_probs=128.2
Q ss_pred CcEEEEecCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeec
Q 013871 61 EAVACRMATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFF 140 (434)
Q Consensus 61 ~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~ 140 (434)
..+|+....+.|+.+++..... ....-.......++|++.. ..| +|... ..+.|..+++.. ..........
T Consensus 87 ~~~l~~~~~~~I~~i~~~~~~~-~~~~~~~~~~~gl~~d~~~-~~l-y~~D~---~~~~I~r~~~~g---~~~~~~~~~~ 157 (386)
T 3v65_B 87 EPVLLFANRIDIRQVLPHRSEY-TLLLNNLENAIALDFHHRR-ELV-FWSDV---TLDRILRANLNG---SNVEEVVSTG 157 (386)
T ss_dssp CCEEEEECBSCEEEECTTSCCC-EEEECSCSCEEEEEEETTT-TEE-EEEET---TTTEEEEEETTS---CCEEEEECSS
T ss_pred cceeEeecCccceeeccCCCcE-EEEecCCCccEEEEEecCC-CeE-EEEeC---CCCcEEEEecCC---CCcEEEEeCC
Confidence 4455556667888888765332 1111224567889999863 333 33322 124666666654 2211111111
Q ss_pred ccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCe
Q 013871 141 RCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPAS 220 (434)
Q Consensus 141 ~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~ 220 (434)
......+.+.+.+..|.+. .. +...|+.++..+.....+....-....++++.|.+..+.+.-....+.
T Consensus 158 ~~~p~glavd~~~g~lY~~-d~----------~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~ 226 (386)
T 3v65_B 158 LESPGGLAVDWVHDKLYWT-DS----------GTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPR 226 (386)
T ss_dssp CSCCCCEEEETTTTEEEEE-ET----------TTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCE
T ss_pred CCCccEEEEEeCCCeEEEE-cC----------CCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCE
Confidence 1122345555555555432 11 112356666655432222222224568999999887777643322378
Q ss_pred EEEEecccceeEEe---CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC--EEEEEeeCCCceEEEECCCCCEEE
Q 013871 221 ATIFNKKCRPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG--KQLGTTRAECSVTSEWSPDGRYFM 295 (434)
Q Consensus 221 v~l~d~~~~~~~~~---~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~--~~i~~~~~~~~~~~~wspdg~~l~ 295 (434)
|..+++.+.....+ .-..-+.|+|+|++..|.++..++ +.|+.+|++.. +.+.......+..++. ++..|+
T Consensus 227 I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~--~~I~~~d~dG~~~~~~~~~~~~~P~giav--~~~~ly 302 (386)
T 3v65_B 227 IEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKH--HVIERANLDGSHRKAVISQGLPHPFAITV--FEDSLY 302 (386)
T ss_dssp EEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTT--TEEEEECTTSCSCEEEECSSCSSEEEEEE--ETTEEE
T ss_pred EEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCC--CEEEEEeCCCCeeEEEEECCCCCceEEEE--ECCEEE
Confidence 99999886554444 223458899999999888887654 78999998743 2222212224445666 333555
Q ss_pred EEEcCCceeeCCcEEEEe-ecCceeeee
Q 013871 296 TATTAPRLQIDNGIKIFH-HNGSLFFKK 322 (434)
Q Consensus 296 tas~~prl~~D~~i~iw~-~~g~~~~~~ 322 (434)
.+... .+.|..++ .+|+.+...
T Consensus 303 ~td~~-----~~~V~~~~~~~G~~~~~i 325 (386)
T 3v65_B 303 WTDWH-----TKSINSANKFTGKNQEII 325 (386)
T ss_dssp EEETT-----TTEEEEEETTTCCSCEEE
T ss_pred EeeCC-----CCeEEEEECCCCcceEEE
Confidence 54442 67788787 677655443
No 239
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=97.94 E-value=0.00046 Score=62.47 Aligned_cols=175 Identities=13% Similarity=0.127 Sum_probs=111.6
Q ss_pred eEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcc-eeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEE
Q 013871 145 VQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH-EGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATI 223 (434)
Q Consensus 145 ~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~-~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l 223 (434)
..+.|+++| .|.+. +.. ++...|..++...+. ...+++........+++ +++++.+. ...++.+.+
T Consensus 24 ~Gl~~~~dg-~Lyvs-tg~--------~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~--~g~~lyv~-t~~~~~v~v 90 (266)
T 2iwa_A 24 QGLVYAEND-TLFES-TGL--------YGRSSVRQVALQTGKVENIHKMDDSYFGEGLTL--LNEKLYQV-VWLKNIGFI 90 (266)
T ss_dssp EEEEECSTT-EEEEE-ECS--------TTTCEEEEEETTTCCEEEEEECCTTCCEEEEEE--ETTEEEEE-ETTCSEEEE
T ss_pred ccEEEeCCC-eEEEE-CCC--------CCCCEEEEEECCCCCEEEEEecCCCcceEEEEE--eCCEEEEE-EecCCEEEE
Confidence 467888886 44443 221 133457777765432 33344433222234444 46677764 567889999
Q ss_pred Eeccc-ceeEEeCCc-CeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC-------CceEEEECCCCCEE
Q 013871 224 FNKKC-RPILELGSG-PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-------CSVTSEWSPDGRYF 294 (434)
Q Consensus 224 ~d~~~-~~~~~~~~~-~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-------~~~~~~wspdg~~l 294 (434)
+|... +.+.++..+ + ....+++||+.++++. + .+.|.++|.++.+.+..+.-. ....++|. ||+.+
T Consensus 91 iD~~t~~v~~~i~~g~~-~g~glt~Dg~~l~vs~-g--s~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~ly 165 (266)
T 2iwa_A 91 YDRRTLSNIKNFTHQMK-DGWGLATDGKILYGSD-G--TSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVW 165 (266)
T ss_dssp EETTTTEEEEEEECCSS-SCCEEEECSSSEEEEC-S--SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEE
T ss_pred EECCCCcEEEEEECCCC-CeEEEEECCCEEEEEC-C--CCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEE
Confidence 99864 455566332 2 2345677898888775 3 469999999998777666531 24458888 78544
Q ss_pred EEEEcCCceeeCCcEEEEee-cCceeeeeecc---------------cceeeEEEcCCCCCCCCc
Q 013871 295 MTATTAPRLQIDNGIKIFHH-NGSLFFKKMFD---------------KLFQAEWKPVSPDKFGDI 343 (434)
Q Consensus 295 ~tas~~prl~~D~~i~iw~~-~g~~~~~~~~~---------------~~~~~~w~p~~~~~~~~~ 343 (434)
+.... ++.|.+-|. +|+.+...... .+..++|.|+...+|-..
T Consensus 166 vn~~~------~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTg 224 (266)
T 2iwa_A 166 ANIWQ------TDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTG 224 (266)
T ss_dssp EEETT------SSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEE
T ss_pred EecCC------CCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEEC
Confidence 44334 788999998 66666665542 458999999988888764
No 240
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=97.93 E-value=0.00097 Score=61.83 Aligned_cols=105 Identities=10% Similarity=0.066 Sum_probs=67.0
Q ss_pred CCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEE
Q 013871 196 GPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQ 273 (434)
Q Consensus 196 ~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~ 273 (434)
..+.++...++|..++ +..++.+..+|..+..+..+ .......+...++|++. +++ .+|.|..+|. +++.
T Consensus 215 ~~~~~~~~~~~g~l~v---~t~~~gl~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~-v~t---~~ggl~~~d~-~g~~ 286 (330)
T 3hxj_A 215 WTVTRPAISEDGTIYV---TSLDGHLYAINPDGTEKWRFKTGKRIESSPVIGNTDTIY-FGS---YDGHLYAINP-DGTE 286 (330)
T ss_dssp CCCSCCEECTTSCEEE---EETTTEEEEECTTSCEEEEEECSSCCCSCCEECTTSCEE-EEC---TTCEEEEECT-TSCE
T ss_pred cceeceEECCCCeEEE---EcCCCeEEEECCCCCEeEEeeCCCCccccceEcCCCeEE-Eec---CCCCEEEECC-CCcE
Confidence 4577888888886555 44467888888777666554 23334556677777654 454 3468999996 6666
Q ss_pred EEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec
Q 013871 274 LGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN 315 (434)
Q Consensus 274 i~~~~~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~ 315 (434)
+..+... .+..+..+++|+.+ .++. ++.+++....
T Consensus 287 ~~~~~~~~~~~~~~~~d~~g~l~-~gt~------~G~~~~~~~~ 323 (330)
T 3hxj_A 287 KWNFETGSWIIATPVIDENGTIY-FGTR------NGKFYALFNL 323 (330)
T ss_dssp EEEEECSSCCCSCCEECTTCCEE-EECT------TSCEEEEEC-
T ss_pred EEEEEcCCccccceEEcCCCEEE-EEcC------CCeEEEEecc
Confidence 6555432 34446777888754 4666 7777766543
No 241
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.90 E-value=0.015 Score=53.94 Aligned_cols=224 Identities=5% Similarity=-0.107 Sum_probs=120.7
Q ss_pred CCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe--cCCeEEEEeCCCC----CCceeeeeecCCeeEEEE
Q 013871 25 EKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM--ATNEIQFFDTTDF----PKGILYRLRVPGVAAFEV 98 (434)
Q Consensus 25 d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~--~~~~i~v~~~~~~----~~~~~~~~~~~~v~~~~~ 98 (434)
...|+..|+.+++....+... .....+.|.+++..|... .++.|+.++.... ...............+++
T Consensus 9 ~~~I~~i~~~~~~~~~~~~~~----~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glav 84 (316)
T 1ijq_A 9 RHEVRKMTLDRSEYTSLIPNL----RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAV 84 (316)
T ss_dssp BSSEEEEETTSCCCEEEECSC----SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEE
T ss_pred CCeEEEEECCCcceEehhcCC----CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEE
Confidence 356899998877654433221 223378999876655544 3579999998651 111111111234567788
Q ss_pred eCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEE
Q 013871 99 SKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLN 178 (434)
Q Consensus 99 sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~ 178 (434)
.+.++. + +|... ....|.++++.. ..........-.....+...|.+..|.+. .. .. ...|+
T Consensus 85 d~~~~~-l-y~~d~---~~~~I~~~~~~g---~~~~~~~~~~~~~P~~iavdp~~g~ly~~-d~--~~-------~~~I~ 146 (316)
T 1ijq_A 85 DWIHSN-I-YWTDS---VLGTVSVADTKG---VKRKTLFRENGSKPRAIVVDPVHGFMYWT-DW--GT-------PAKIK 146 (316)
T ss_dssp ETTTTE-E-EEEET---TTTEEEEEETTS---SSEEEEEECTTCCEEEEEEETTTTEEEEE-EC--SS-------SCEEE
T ss_pred eecCCe-E-EEEEC---CCCEEEEEeCCC---CceEEEEECCCCCcceEEeCCCCCEEEEE-cc--CC-------CCeEE
Confidence 765332 2 22221 235777777653 21111111111233567778777765542 11 11 12467
Q ss_pred EEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeEEe---C--CcCeeEEEECCCCCeEEE
Q 013871 179 YLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL---G--SGPYNTVRWNPKGKFLCL 253 (434)
Q Consensus 179 ~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~~---~--~~~~~~i~~SP~g~~l~~ 253 (434)
.++.+|.....+....-...+.++|+|++..+.++ ....+.|..+|..+.....+ . ...-..|++. +..|.+
T Consensus 147 ~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~-D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~--~~~ly~ 223 (316)
T 1ijq_A 147 KGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWV-DSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFW 223 (316)
T ss_dssp EEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEE-ETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEE
T ss_pred EEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEE-ECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE--CCEEEE
Confidence 77766654332221223456799999998888874 44567999999876443333 1 1223456663 455666
Q ss_pred EecCCCCCeEEEEEccCCEEEE
Q 013871 254 AGFGNLPGDMAFWDYVDGKQLG 275 (434)
Q Consensus 254 ~~~~~~~g~i~iwd~~~~~~i~ 275 (434)
+..++ +.|..+|..+++.+.
T Consensus 224 ~d~~~--~~V~~~~~~~g~~~~ 243 (316)
T 1ijq_A 224 TDIIN--EAIFSANRLTGSDVN 243 (316)
T ss_dssp EETTT--TEEEEEETTTCCCCE
T ss_pred EECCC--CeEEEEeCCCCcceE
Confidence 65543 678888876664333
No 242
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=97.89 E-value=0.011 Score=61.19 Aligned_cols=58 Identities=14% Similarity=0.233 Sum_probs=45.5
Q ss_pred CeEEEEEccCCEEEEEeeCCCc-eEEEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceeeeeec
Q 013871 261 GDMAFWDYVDGKQLGTTRAECS-VTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKKMF 324 (434)
Q Consensus 261 g~i~iwd~~~~~~i~~~~~~~~-~~~~wspdg~~l~tas~~prl~~D~~i~iw~~-~g~~~~~~~~ 324 (434)
|.|..||+.+++.+..+..+.. ..-.++..|..+++++. |+.|++||. +|+++.+...
T Consensus 455 g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~gt~------dg~l~a~D~~tG~~lw~~~~ 514 (689)
T 1yiq_A 455 GKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFEGSA------DGRVIAYAADTGEKLWEQPA 514 (689)
T ss_dssp EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECT------TSEEEEEETTTCCEEEEEEC
T ss_pred eeEEEEECCCCCeEeEccCCCCccCccceECCCEEEEECC------CCcEEEEECCCCccceeeeC
Confidence 7899999999999888776532 22466677888888887 999999997 6888766543
No 243
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=97.82 E-value=0.021 Score=52.92 Aligned_cols=238 Identities=9% Similarity=-0.012 Sum_probs=125.1
Q ss_pred ceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCc-----------------CCCCCCeeeecC-CCcEE
Q 013871 3 LLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNM-----------------TKTTWPSIRFSS-DEAVA 64 (434)
Q Consensus 3 ~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~-----------------~~~~~~~~~~S~-d~~~l 64 (434)
.+++++|+|++|.+.. .++.|..||..+++. ..+..... .......+++.+ +++++
T Consensus 22 ~~i~~d~~g~~l~v~~-----~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~ 95 (322)
T 2fp8_A 22 NSFTFDSTNKGFYTSV-----QDGRVIKYEGPNSGF-VDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLY 95 (322)
T ss_dssp CCEECCTTCSSEEEEC-----TTSEEEEECCTTTCE-EEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEE
T ss_pred eEEEEcCCCCEEEEEc-----CCCeEEEECCCCCce-EEEecccccccccccccccchhccccCCCCceEEEcCCCCcEE
Confidence 4688999999666544 567899998776653 33332100 001223678887 77766
Q ss_pred EEecCCeEEEEeCCCCCCceeee----eecCCeeEEEEeC-CCCCeEEEEecCC-------------CCCCceEEEEEcC
Q 013871 65 CRMATNEIQFFDTTDFPKGILYR----LRVPGVAAFEVSK-APGSHVAVFVPES-------------KGSPASVQIYACG 126 (434)
Q Consensus 65 a~~~~~~i~v~~~~~~~~~~~~~----~~~~~v~~~~~sp-~~~~~ia~~~~~~-------------~~~~~~v~i~~~~ 126 (434)
++...+.|..++........... ........+.+.| ++.-+++- ... ....+.|..++..
T Consensus 96 v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d--~~~~~~~~~~~~~~~~~~~~g~v~~~d~~ 173 (322)
T 2fp8_A 96 IVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTD--VSTLYDDRGVQQIMDTSDKTGRLIKYDPS 173 (322)
T ss_dssp EEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEE--SCSSCCTTCHHHHHHHTCCCEEEEEEETT
T ss_pred EEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEEC--CcccccccccceehcccCCCceEEEEeCC
Confidence 66555668888865421111111 1123467788998 64322221 110 0123566666654
Q ss_pred CCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCc----ceeeeecCCCCCeEEEE
Q 013871 127 KDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGT----HEGLVPLRKEGPVHDVQ 202 (434)
Q Consensus 127 ~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~----~~~~v~l~~~~~i~~v~ 202 (434)
. ++....... -.....+.|+++|+.|++.- + +...|+.++..+. ......+ .+ ...++
T Consensus 174 ~---~~~~~~~~~-~~~p~gia~~~dg~~lyv~d-~----------~~~~I~~~~~~~~~~~~~~~~~~~--~g-P~gi~ 235 (322)
T 2fp8_A 174 T---KETTLLLKE-LHVPGGAEVSADSSFVLVAE-F----------LSHQIVKYWLEGPKKGTAEVLVKI--PN-PGNIK 235 (322)
T ss_dssp T---TEEEEEEEE-ESCCCEEEECTTSSEEEEEE-G----------GGTEEEEEESSSTTTTCEEEEEEC--SS-EEEEE
T ss_pred C---CEEEEeccC-CccCcceEECCCCCEEEEEe-C----------CCCeEEEEECCCCcCCccceEEeC--CC-CCCeE
Confidence 3 221111111 12334689999999776532 1 1113555554431 1111122 34 67899
Q ss_pred ECcCCCEEEEEEc--------cCCCeEEEEecccceeEEeC--C----cCeeEEEECCCCCeEEEEecCCCCCeEEEEEc
Q 013871 203 WSYSGSEFAVVYG--------FMPASATIFNKKCRPILELG--S----GPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDY 268 (434)
Q Consensus 203 wspdg~~~av~~g--------~~~~~v~l~d~~~~~~~~~~--~----~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~ 268 (434)
+.++|+.++...+ ...+.|..||..++.+..+. . ..+..+.+ .+|+ |.+++.. .+.|.++++
T Consensus 236 ~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~g~~~~~~~~~~~-~~g~-L~v~~~~--~~~i~~~~~ 311 (322)
T 2fp8_A 236 RNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQE-HDGL-LYIGTLF--HGSVGILVY 311 (322)
T ss_dssp ECTTSCEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECCTTTTTSCCCEEEE-ETTE-EEEECSS--CSEEEEEEC
T ss_pred ECCCCCEEEEecCcccccccCCCccEEEEECCCCCEEEEEECCCCCccccceEEEE-eCCE-EEEeecC--CCceEEEec
Confidence 9999985553322 11357888888777665552 1 23455655 3444 4444432 257888876
Q ss_pred cC
Q 013871 269 VD 270 (434)
Q Consensus 269 ~~ 270 (434)
..
T Consensus 312 ~~ 313 (322)
T 2fp8_A 312 DK 313 (322)
T ss_dssp --
T ss_pred cc
Confidence 53
No 244
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=97.76 E-value=0.031 Score=57.92 Aligned_cols=77 Identities=14% Similarity=0.165 Sum_probs=54.0
Q ss_pred CeEEEEeccc-ceeEEe-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC-Cc--eEEEECCCCCE
Q 013871 219 ASATIFNKKC-RPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-CS--VTSEWSPDGRY 293 (434)
Q Consensus 219 ~~v~l~d~~~-~~~~~~-~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-~~--~~~~wspdg~~ 293 (434)
+.+..||+++ +.+.++ ...+...-.++..|.++++++ .+|.|+.||.++++.+..++.+ .+ .-+.|+.||+.
T Consensus 455 g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~gt---~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~q 531 (689)
T 1yiq_A 455 GKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFEGS---ADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQ 531 (689)
T ss_dssp EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEEC---TTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred eeEEEEECCCCCeEeEccCCCCccCccceECCCEEEEEC---CCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEE
Confidence 5688899964 444444 233344446667788888876 6789999999999999888754 22 23888999986
Q ss_pred EEEEE
Q 013871 294 FMTAT 298 (434)
Q Consensus 294 l~tas 298 (434)
++...
T Consensus 532 yv~~~ 536 (689)
T 1yiq_A 532 YVTFM 536 (689)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 55543
No 245
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=97.75 E-value=0.0017 Score=58.24 Aligned_cols=157 Identities=14% Similarity=0.111 Sum_probs=98.3
Q ss_pred cceeEEEEeeCCcc-eeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-cceeEEeCCcCeeEEEECCCCCe
Q 013871 173 GESKLNYLTTDGTH-EGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILELGSGPYNTVRWNPKGKF 250 (434)
Q Consensus 173 g~~~l~~l~~~~~~-~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~-~~~~~~~~~~~~~~i~~SP~g~~ 250 (434)
|...|..++...+. ...++++ .........++++.+.++ ...++.+.+||.+ .+.+.++.... ....+++||+.
T Consensus 63 g~S~v~~vD~~Tgkv~~~~~l~--~~~FgeGit~~g~~ly~l-tw~~~~v~v~D~~t~~~~~ti~~~~-eG~glt~dg~~ 138 (262)
T 3nol_A 63 GRSSIRKVDIESGKTLQQIELG--KRYFGEGISDWKDKIVGL-TWKNGLGFVWNIRNLRQVRSFNYDG-EGWGLTHNDQY 138 (262)
T ss_dssp TEEEEEEECTTTCCEEEEEECC--TTCCEEEEEEETTEEEEE-ESSSSEEEEEETTTCCEEEEEECSS-CCCCEEECSSC
T ss_pred CCceEEEEECCCCcEEEEEecC--CccceeEEEEeCCEEEEE-EeeCCEEEEEECccCcEEEEEECCC-CceEEecCCCE
Confidence 44456677665432 2334443 333333344567777775 4567899999986 45555653221 22344467887
Q ss_pred EEEEecCCCCCeEEEEEccCCEEEEEeeCC-------CceEEEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceeeee
Q 013871 251 LCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-------CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKK 322 (434)
Q Consensus 251 l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-------~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~-~g~~~~~~ 322 (434)
|+.+.. .+.|.++|..+.+.+..+.-. ....++|. +|+.++..-. ++.|.+-|. +|+.+...
T Consensus 139 L~~SdG---s~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~------~~~I~vIDp~tG~V~~~I 208 (262)
T 3nol_A 139 LIMSDG---TPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQ------TNKIVRIDPETGKVTGII 208 (262)
T ss_dssp EEECCS---SSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETT------SSEEEEECTTTCBEEEEE
T ss_pred EEEECC---CCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEcc------CCeEEEEECCCCcEEEEE
Confidence 777652 358999999999877765431 22347887 7864443334 777888877 56655544
Q ss_pred ec--------------ccceeeEEEcCCCCCCCCc
Q 013871 323 MF--------------DKLFQAEWKPVSPDKFGDI 343 (434)
Q Consensus 323 ~~--------------~~~~~~~w~p~~~~~~~~~ 343 (434)
.. +.+..++|.|+...+|-..
T Consensus 209 d~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 209 DLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp ECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred ECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence 33 2467899999988888765
No 246
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=97.74 E-value=0.031 Score=52.67 Aligned_cols=237 Identities=9% Similarity=-0.074 Sum_probs=131.1
Q ss_pred eeeecCCCcEEEEecCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCc
Q 013871 54 SIRFSSDEAVACRMATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQP 133 (434)
Q Consensus 54 ~~~~S~d~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~ 133 (434)
|....+ ..+|.....+.|+..++..... ....-.......++|++.. ..| +|.... .+.|..+++.. ...
T Consensus 38 C~~~~~-~~~ll~~~~~~I~~i~~~g~~~-~~~~~~~~~~~~l~~d~~~-~~l-y~~D~~---~~~I~r~~~~g---~~~ 107 (349)
T 3v64_C 38 CKALGP-EPVLLFANRIDIRQVLPHRSEY-TLLLNNLENAIALDFHHRR-ELV-FWSDVT---LDRILRANLNG---SNV 107 (349)
T ss_dssp EEESSS-CCEEEEECBSCEEEECTTSCCE-EEEECSCSCEEEEEEETTT-TEE-EEEETT---TTEEEEEETTS---CSC
T ss_pred cccccc-CceeEeecccceEEEeCCCCee-EEeecCCCceEEEEEeccc-cEE-EEEecc---CCceEEEecCC---CCc
Confidence 544445 4456656667788888765321 1111124457888999863 333 333221 24666666654 221
Q ss_pred eeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEE
Q 013871 134 LARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVV 213 (434)
Q Consensus 134 i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~ 213 (434)
.............+...+.+..|.+. .. +...|+.++..+.....+....-....++++.|.+..+.+.
T Consensus 108 ~~~~~~~~~~p~glavd~~~g~ly~~-d~----------~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~t 176 (349)
T 3v64_C 108 EEVVSTGLESPGGLAVDWVHDKLYWT-DS----------GTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWT 176 (349)
T ss_dssp EEEECSSCSCCCEEEEETTTTEEEEE-ET----------TTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEE
T ss_pred eEEEeCCCCCccEEEEecCCCeEEEE-cC----------CCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEe
Confidence 11111111122345566555555442 11 11246666666653222222223456899999977777664
Q ss_pred EccCC-CeEEEEecccceeEEeC---CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC--EEEEEeeCCCceEEEE
Q 013871 214 YGFMP-ASATIFNKKCRPILELG---SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG--KQLGTTRAECSVTSEW 287 (434)
Q Consensus 214 ~g~~~-~~v~l~d~~~~~~~~~~---~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~--~~i~~~~~~~~~~~~w 287 (434)
.... +.|..+++.+.....+. -..-+.|+|+|++..|.++..++ +.|+.+|.+.. +.+.......+..++.
T Consensus 177 -d~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~--~~I~~~~~dG~~~~~~~~~~~~~P~giav 253 (349)
T 3v64_C 177 -DWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKH--HVIERANLDGSHRKAVISQGLPHPFAITV 253 (349)
T ss_dssp -ECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTT--TEEEEEETTSCSCEEEECSSCSSEEEEEE
T ss_pred -ccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCC--CEEEEEeCCCCceEEEEeCCCCCceEEEE
Confidence 4444 78999998876555442 23458899999999888887654 78999998743 2222222224445666
Q ss_pred CCCCCEEEEEEcCCceeeCCcEEEEe-ecCceeee
Q 013871 288 SPDGRYFMTATTAPRLQIDNGIKIFH-HNGSLFFK 321 (434)
Q Consensus 288 spdg~~l~tas~~prl~~D~~i~iw~-~~g~~~~~ 321 (434)
++..|..+... .+.|...+ .+|+.+..
T Consensus 254 --~~~~ly~td~~-----~~~V~~~~~~~G~~~~~ 281 (349)
T 3v64_C 254 --FEDSLYWTDWH-----TKSINSANKFTGKNQEI 281 (349)
T ss_dssp --ETTEEEEEETT-----TTEEEEEETTTCCSCEE
T ss_pred --ECCEEEEecCC-----CCeEEEEEccCCCccEE
Confidence 33455555442 66777777 67765443
No 247
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=97.74 E-value=0.011 Score=54.61 Aligned_cols=208 Identities=10% Similarity=0.031 Sum_probs=113.1
Q ss_pred CCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCC
Q 013871 24 QEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPG 103 (434)
Q Consensus 24 ~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 103 (434)
.++.|..+|.. |+.+..+.... ..+.++...+++.+++...++.|..|+.. .............+..+...+++
T Consensus 115 ~~~~l~~~d~~-g~~~~~~~~~~---~~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g- 188 (330)
T 3hxj_A 115 MDGHLYAINTD-GTEKWRFKTKK---AIYATPIVSEDGTIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDG- 188 (330)
T ss_dssp TTSEEEEECTT-SCEEEEEECSS---CCCSCCEECTTSCEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTC-
T ss_pred cCCEEEEEcCC-CCEEEEEcCCC---ceeeeeEEcCCCEEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCC-
Confidence 46789999987 87776665432 34446677778887776667899999987 33212222223334555555442
Q ss_pred CeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeC
Q 013871 104 SHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTD 183 (434)
Q Consensus 104 ~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~ 183 (434)
.. |+.. +.+..++ ++ +..+............+...++|.. .+.+ . ...|+.++..
T Consensus 189 ~l---~v~t-----~~l~~~d-~~---g~~~~~~~~~~~~~~~~~~~~~g~l-~v~t-~-----------~~gl~~~~~~ 243 (330)
T 3hxj_A 189 TI---YFGS-----DKVYAIN-PD---GTEKWNFYAGYWTVTRPAISEDGTI-YVTS-L-----------DGHLYAINPD 243 (330)
T ss_dssp CE---EEES-----SSEEEEC-TT---SCEEEEECCSSCCCSCCEECTTSCE-EEEE-T-----------TTEEEEECTT
T ss_pred EE---EEEe-----CEEEEEC-CC---CcEEEEEccCCcceeceEECCCCeE-EEEc-C-----------CCeEEEECCC
Confidence 22 2111 4556666 33 3333333322233445555666542 2221 1 1135555433
Q ss_pred CcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeEEe--CCcCeeEEEECCCCCeEEEEecCCCCC
Q 013871 184 GTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPG 261 (434)
Q Consensus 184 ~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g 261 (434)
+...-..... ...+..+...+++..++ +..++.+..||.+++.+..+ ....+.++...++|++.+ ++ .+|
T Consensus 244 g~~~~~~~~~-~~~~~~~~~~~~g~l~v---~t~~ggl~~~d~~g~~~~~~~~~~~~~~~~~~d~~g~l~~-gt---~~G 315 (330)
T 3hxj_A 244 GTEKWRFKTG-KRIESSPVIGNTDTIYF---GSYDGHLYAINPDGTEKWNFETGSWIIATPVIDENGTIYF-GT---RNG 315 (330)
T ss_dssp SCEEEEEECS-SCCCSCCEECTTSCEEE---ECTTCEEEEECTTSCEEEEEECSSCCCSCCEECTTCCEEE-EC---TTS
T ss_pred CCEeEEeeCC-CCccccceEcCCCeEEE---ecCCCCEEEECCCCcEEEEEEcCCccccceEEcCCCEEEE-Ec---CCC
Confidence 3322222221 22234456666665444 55567899999866655544 455667788888888655 54 557
Q ss_pred eEEEEEccC
Q 013871 262 DMAFWDYVD 270 (434)
Q Consensus 262 ~i~iwd~~~ 270 (434)
.+.+...+.
T Consensus 316 ~~~~~~~~~ 324 (330)
T 3hxj_A 316 KFYALFNLE 324 (330)
T ss_dssp CEEEEEC--
T ss_pred eEEEEeccc
Confidence 888876543
No 248
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=97.72 E-value=0.0093 Score=55.33 Aligned_cols=241 Identities=9% Similarity=0.033 Sum_probs=122.1
Q ss_pred eeeecCCCcEEEEe-cCCeEEEEeCCCCCCceeeee--------------------ecCCeeEEEEeCCCCCeEEEEecC
Q 013871 54 SIRFSSDEAVACRM-ATNEIQFFDTTDFPKGILYRL--------------------RVPGVAAFEVSKAPGSHVAVFVPE 112 (434)
Q Consensus 54 ~~~~S~d~~~la~~-~~~~i~v~~~~~~~~~~~~~~--------------------~~~~v~~~~~sp~~~~~ia~~~~~ 112 (434)
.++|.++++++... .++.|..|+...... ..... .......+++.++.+.++. .+
T Consensus 23 ~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v---~d 98 (322)
T 2fp8_A 23 SFTFDSTNKGFYTSVQDGRVIKYEGPNSGF-VDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYI---VD 98 (322)
T ss_dssp CEECCTTCSSEEEECTTSEEEEECCTTTCE-EEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEE---EE
T ss_pred EEEEcCCCCEEEEEcCCCeEEEECCCCCce-EEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEE---EE
Confidence 68999999844444 567999998765321 11111 0124677888873232221 11
Q ss_pred CCCCCceEEEEEcCCCCCCCceeeee--ecccceeEEEECC-CCCeEEEEEEecccccCce-------eecceeEEEEee
Q 013871 113 SKGSPASVQIYACGKDLQSQPLARRS--FFRCSTVQLNWNR-GSTGLLAVAQSDVDKTNQS-------YYGESKLNYLTT 182 (434)
Q Consensus 113 ~~~~~~~v~i~~~~~~~~~~~i~~~~--~~~~~~~~~~ws~-~G~~l~~~~~~~~d~~~~~-------~~g~~~l~~l~~ 182 (434)
.. ..+..++..... ...+.... ........+...+ +|. |.+ ++......... ......|+.++.
T Consensus 99 ~~---~~i~~~d~~~g~-~~~~~~~~~~~~~~~p~~i~~d~~~G~-l~v-~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~ 172 (322)
T 2fp8_A 99 CY---YHLSVVGSEGGH-ATQLATSVDGVPFKWLYAVTVDQRTGI-VYF-TDVSTLYDDRGVQQIMDTSDKTGRLIKYDP 172 (322)
T ss_dssp TT---TEEEEECTTCEE-CEEEESEETTEECSCEEEEEECTTTCC-EEE-EESCSSCCTTCHHHHHHHTCCCEEEEEEET
T ss_pred CC---CCEEEEeCCCCE-EEEecccCCCCcccccceEEEecCCCE-EEE-ECCcccccccccceehcccCCCceEEEEeC
Confidence 11 235555543210 01111100 0001234678888 886 333 22210000000 001234666665
Q ss_pred CCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccc------eeEEeCCcCeeEEEECCCCCeEEEEec
Q 013871 183 DGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR------PILELGSGPYNTVRWNPKGKFLCLAGF 256 (434)
Q Consensus 183 ~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~------~~~~~~~~~~~~i~~SP~g~~l~~~~~ 256 (434)
.+.....+ .......+.++|+|+|+.+.+. ....+.|.+|++.+. ....+ .+ -..+++.++|++.+....
T Consensus 173 ~~~~~~~~-~~~~~~p~gia~~~dg~~lyv~-d~~~~~I~~~~~~~~~~~~~~~~~~~-~g-P~gi~~d~~G~l~va~~~ 248 (322)
T 2fp8_A 173 STKETTLL-LKELHVPGGAEVSADSSFVLVA-EFLSHQIVKYWLEGPKKGTAEVLVKI-PN-PGNIKRNADGHFWVSSSE 248 (322)
T ss_dssp TTTEEEEE-EEEESCCCEEEECTTSSEEEEE-EGGGTEEEEEESSSTTTTCEEEEEEC-SS-EEEEEECTTSCEEEEEEE
T ss_pred CCCEEEEe-ccCCccCcceEECCCCCEEEEE-eCCCCeEEEEECCCCcCCccceEEeC-CC-CCCeEECCCCCEEEEecC
Confidence 43322111 1111234679999999977764 444579999998642 11122 23 567999999986555432
Q ss_pred C-------CCCCeEEEEEccCCEEEEEeeCC------CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecC
Q 013871 257 G-------NLPGDMAFWDYVDGKQLGTTRAE------CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG 316 (434)
Q Consensus 257 ~-------~~~g~i~iwd~~~~~~i~~~~~~------~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g 316 (434)
. ...+.|..+|.+ ++.+..+..+ .++.+.+ .+|+.+++... .+.|.++++..
T Consensus 249 ~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~------~~~i~~~~~~~ 313 (322)
T 2fp8_A 249 ELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLF------HGSVGILVYDK 313 (322)
T ss_dssp ETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSS------CSEEEEEEC--
T ss_pred cccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCCEEEEeecC------CCceEEEeccc
Confidence 0 012578888874 6666555432 3444555 45655554444 77888887654
No 249
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.71 E-value=0.025 Score=50.72 Aligned_cols=198 Identities=17% Similarity=0.160 Sum_probs=115.0
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCC
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDF 80 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~ 80 (434)
+..|+|+|++..|.+... .++.|...|+. |+.++++..... ...-.+++.+++.++++. .++.|.++++...
T Consensus 29 lSGla~~~~~~~L~aV~d----~~~~I~~ld~~-g~v~~~i~l~g~--~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~ 101 (255)
T 3qqz_A 29 ISSLTWSAQSNTLFSTIN----KPAAIVEMTTN-GDLIRTIPLDFV--KDLETIEYIGDNQFVISDERDYAIYVISLTPN 101 (255)
T ss_dssp EEEEEEETTTTEEEEEEE----TTEEEEEEETT-CCEEEEEECSSC--SSEEEEEECSTTEEEEEETTTTEEEEEEECTT
T ss_pred cceeEEeCCCCEEEEEEC----CCCeEEEEeCC-CCEEEEEecCCC--CChHHeEEeCCCEEEEEECCCCcEEEEEcCCC
Confidence 467999999887776552 35778888987 888888754321 233367888999887765 4579999988664
Q ss_pred CCc-eeeeee--------cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeee-------eecccce
Q 013871 81 PKG-ILYRLR--------VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARR-------SFFRCST 144 (434)
Q Consensus 81 ~~~-~~~~~~--------~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~-------~~~~~~~ 144 (434)
... ...... -.+...++|+|.++..+.+ .+ ..+..|..|+ .......+... ..+..+.
T Consensus 102 ~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va--~E--~~p~~i~~~~--g~~~~~~l~i~~~~~~~~~~~~~d~ 175 (255)
T 3qqz_A 102 SEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFF--KE--KNPIEVYKVN--GLLSSNELHISKDKALQRQFTLDDV 175 (255)
T ss_dssp CCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEE--EE--SSSEEEEEEE--STTCSSCCEEEECHHHHHTCCSSCC
T ss_pred CeeeeeeeeccccccccccCCcceEEEeCCCCEEEEE--EC--cCCceEEEEc--ccccCCceeeecchhhccccccCCc
Confidence 421 111121 1245789999984433332 22 2233444443 11001111111 1223355
Q ss_pred eEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCC--------CCeEEEEECcCCCEEEEEEcc
Q 013871 145 VQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKE--------GPVHDVQWSYSGSEFAVVYGF 216 (434)
Q Consensus 145 ~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~--------~~i~~v~wspdg~~~av~~g~ 216 (434)
..+.++|.-..++++.+ .+. .|..++..|.......|... ..-..|++.|+|+.+++ +
T Consensus 176 S~l~~dp~tg~lliLS~----~s~-------~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv---s 241 (255)
T 3qqz_A 176 SGAEFNQQKNTLLVLSH----ESR-------ALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV---S 241 (255)
T ss_dssp CEEEEETTTTEEEEEET----TTT-------EEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE---E
T ss_pred eeEEEcCCCCeEEEEEC----CCC-------eEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE---c
Confidence 67888888777777632 222 25555655554445555421 24578999999985553 4
Q ss_pred CCCeEEEEec
Q 013871 217 MPASATIFNK 226 (434)
Q Consensus 217 ~~~~v~l~d~ 226 (434)
+++.++.|..
T Consensus 242 E~n~~y~f~~ 251 (255)
T 3qqz_A 242 EPNRFYRFTP 251 (255)
T ss_dssp TTTEEEEEEC
T ss_pred CCceEEEEEe
Confidence 5667777643
No 250
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=97.68 E-value=0.033 Score=51.29 Aligned_cols=259 Identities=8% Similarity=-0.019 Sum_probs=145.0
Q ss_pred ecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC---------------Ce
Q 013871 7 CLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT---------------NE 71 (434)
Q Consensus 7 fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~---------------~~ 71 (434)
|+++|.+|...... .+..|...+. +|.....+.... +--++++|.+++.... ..
T Consensus 21 ~~~~g~~iy~~n~~---d~~~ly~~~~-dg~~~~~l~~~~-------~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~ 89 (302)
T 3s25_A 21 FCESDGEVFFSNTN---DNGRLYAMNI-DGSNIHKLSNDT-------AMYINADKNYVYYVRNNNQKITSQTFFSYDRNS 89 (302)
T ss_dssp EEEETTEEEEEEGG---GTTEEEEEET-TSCSCEEEEEEE-------EEEEEECSSEEEEEEECC------CCSSCCSEE
T ss_pred EEEeCCEEEEEeCC---CCceEEEEcC-CCCCCEEccCCc-------eeeEEEcCCEEEEEECCCCcccccceeccCCCe
Confidence 67889988876532 2355666664 343344443321 3356889999988742 24
Q ss_pred EEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECC
Q 013871 72 IQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNR 151 (434)
Q Consensus 72 i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~ 151 (434)
|+..++...+. ..+... ....|+|+ +..|.+ ...+......|...++.. .....++-... ..+++
T Consensus 90 Iy~i~~dg~~~---~~l~~~--~~~~~s~~-g~~Iy~-~~~~~~~~~~Iy~~~~dG----s~~~~lt~~~~----~~~~~ 154 (302)
T 3s25_A 90 LCRIKRNGHGS---TVLDPD--PCIYASLI-GNYIYY-LHYDTQTATSLYRIRIDG----EEKKKIKNHYL----FTCNT 154 (302)
T ss_dssp EEEEETTSCCC---EEEECS--CEEEEEEE-TTEEEE-EEESSSSCEEEEEEETTS----CCCEEEESSCC----CCSEE
T ss_pred EEEEeCCCCcc---eEeecC--CccEEEEe-CCEEEE-EeecCCCCceEEEEECCC----CCeEEEeCCCc----eEeeE
Confidence 56666554321 223222 22366776 445543 321112223455555543 22222322222 34577
Q ss_pred CCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccccee
Q 013871 152 GSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPI 231 (434)
Q Consensus 152 ~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~ 231 (434)
+|+.|... .+ +...|+.+++.+....++ + ++.... .++|++..++.+.......|..-++.+...
T Consensus 155 ~g~~iy~t----~~-------g~~~Iy~~~l~g~~~~~l-~--~~~~~~-~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~ 219 (302)
T 3s25_A 155 SDRYFYYN----NP-------KNGQLYRYDTASQSEALF-Y--DCNCYK-PVVLDDTNVYYMDVNRDNAIVHVNINNPNP 219 (302)
T ss_dssp ETTEEEEE----CT-------TTCCEEEEETTTTEEEEE-E--CSCEEE-EEEEETTEEEEEEGGGTTEEEEECSSSCCC
T ss_pred ECCEEEEE----eC-------CCceEEEEECCCCCEEEE-e--CCCccc-eeeecCCEEEEEEcCCCcEEEEEECCCCCe
Confidence 88887653 11 334588898888755544 2 344443 456999999876554446888888887766
Q ss_pred EEeCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceEEEECCCCCEEEEEEcCCceeeCCcEEE
Q 013871 232 LELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKI 311 (434)
Q Consensus 232 ~~~~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~~~wspdg~~l~tas~~prl~~D~~i~i 311 (434)
..+....+ ..|+|+|++|..+... ..+.|+.-+++.......... . ...+++.+.+|...... .+.|..
T Consensus 220 ~~Lt~~~~--~~~~~~g~~Iy~~~~~-~~~~i~~~~~DG~~r~~l~~~-~--~~~i~i~~d~Iy~td~~-----~~~i~~ 288 (302)
T 3s25_A 220 VVLTEANI--EHYNVYGSLIFYQRGG-DNPALCVVKNDGTGFKELAKG-E--FCNINVTSQYVYFTDFV-----SNKEYC 288 (302)
T ss_dssp EECSCSCE--EEEEEETTEEEEEECS-SSCEEEEEETTSCCCEEEEES-C--EEEEEECSSEEEEEETT-----TCCEEE
T ss_pred EEEeCCCc--ceEEECCCEEEEEECC-CCcEEEEEECCCCccEEeeCC-c--cceEEEeCCEEEEEECC-----CCeEEE
Confidence 66654444 4589999999876432 226788888874422222222 1 23566777888776642 334444
Q ss_pred EeecCc
Q 013871 312 FHHNGS 317 (434)
Q Consensus 312 w~~~g~ 317 (434)
-+++|.
T Consensus 289 ~~~dGs 294 (302)
T 3s25_A 289 TSTQNP 294 (302)
T ss_dssp EESSSC
T ss_pred EECCCC
Confidence 455554
No 251
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=97.65 E-value=0.026 Score=53.31 Aligned_cols=95 Identities=9% Similarity=0.053 Sum_probs=61.4
Q ss_pred ccCCCeEEEEecc-cceeEEeCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC---CceEEEECCC
Q 013871 215 GFMPASATIFNKK-CRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE---CSVTSEWSPD 290 (434)
Q Consensus 215 g~~~~~v~l~d~~-~~~~~~~~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~---~~~~~~wspd 290 (434)
+..++.+..+|.+ ++.+..........+.. ++..|.+++ .+|.|..+|..+++.+...... ....... .
T Consensus 245 ~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~--~~~~l~~~~---~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~ 317 (376)
T 3q7m_A 245 LAYNGNLTALDLRSGQIMWKRELGSVNDFIV--DGNRIYLVD---QNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--Y 317 (376)
T ss_dssp ECTTSCEEEEETTTCCEEEEECCCCEEEEEE--ETTEEEEEE---TTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--E
T ss_pred EecCcEEEEEECCCCcEEeeccCCCCCCceE--ECCEEEEEc---CCCeEEEEECCCCcEEEeecccCCCcccCCEE--E
Confidence 4456789999985 45555554444444444 356666666 4568999999999888776521 1222222 3
Q ss_pred CCEEEEEEcCCceeeCCcEEEEee-cCceeeee
Q 013871 291 GRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKK 322 (434)
Q Consensus 291 g~~l~tas~~prl~~D~~i~iw~~-~g~~~~~~ 322 (434)
+..|++++. ++.+.++|. +|+++...
T Consensus 318 ~~~l~v~~~------~g~l~~~d~~tG~~~~~~ 344 (376)
T 3q7m_A 318 NGNLVVGDS------EGYLHWINVEDGRFVAQQ 344 (376)
T ss_dssp TTEEEEECT------TSEEEEEETTTCCEEEEE
T ss_pred CCEEEEEeC------CCeEEEEECCCCcEEEEE
Confidence 567788877 889999996 66665443
No 252
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=97.63 E-value=0.018 Score=51.57 Aligned_cols=183 Identities=9% Similarity=0.152 Sum_probs=99.0
Q ss_pred ceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe--cCCeEEEEeCCCC
Q 013871 3 LLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM--ATNEIQFFDTTDF 80 (434)
Q Consensus 3 ~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~--~~~~i~v~~~~~~ 80 (434)
..|.|+ +|....+.+.+ ....|+++|+.+|+.+.++.... ... ..-.++++..|..+ .++.+.+||..++
T Consensus 46 qGL~~~-~~~LyestG~~---g~S~v~~vD~~Tgkv~~~~~l~~---~~F-geGit~~g~~ly~ltw~~~~v~v~D~~t~ 117 (262)
T 3nol_A 46 EGFFYR-NGYFYESTGLN---GRSSIRKVDIESGKTLQQIELGK---RYF-GEGISDWKDKIVGLTWKNGLGFVWNIRNL 117 (262)
T ss_dssp EEEEEE-TTEEEEEEEET---TEEEEEEECTTTCCEEEEEECCT---TCC-EEEEEEETTEEEEEESSSSEEEEEETTTC
T ss_pred ceEEEE-CCEEEEECCCC---CCceEEEEECCCCcEEEEEecCC---ccc-eeEEEEeCCEEEEEEeeCCEEEEEECccC
Confidence 568898 67655555521 12489999999999998876542 222 22233344444433 4789999999887
Q ss_pred CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecc-----cceeEEEECCCCCe
Q 013871 81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFR-----CSTVQLNWNRGSTG 155 (434)
Q Consensus 81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~-----~~~~~~~ws~~G~~ 155 (434)
... .++..++ ....++++++..+ +.+ + .+.|.++|..+ .+.+....... .....+.|. +|.
T Consensus 118 ~~~--~ti~~~~-eG~glt~dg~~L~---~Sd--G-s~~i~~iDp~T---~~v~~~I~V~~~g~~~~~lNELe~~-~G~- 183 (262)
T 3nol_A 118 RQV--RSFNYDG-EGWGLTHNDQYLI---MSD--G-TPVLRFLDPES---LTPVRTITVTAHGEELPELNELEWV-DGE- 183 (262)
T ss_dssp CEE--EEEECSS-CCCCEEECSSCEE---ECC--S-SSEEEEECTTT---CSEEEEEECEETTEECCCEEEEEEE-TTE-
T ss_pred cEE--EEEECCC-CceEEecCCCEEE---EEC--C-CCeEEEEcCCC---CeEEEEEEeccCCccccccceeEEE-CCE-
Confidence 643 3344332 2234445533322 222 2 46788888776 45555544321 111235665 553
Q ss_pred EEEEEEecccccCceeecceeEEEEeeCCcc-eeeeecC-----------CCCCeEEEEECcCCCEEEEEEccCC
Q 013871 156 LLAVAQSDVDKTNQSYYGESKLNYLTTDGTH-EGLVPLR-----------KEGPVHDVQWSYSGSEFAVVYGFMP 218 (434)
Q Consensus 156 l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~-~~~v~l~-----------~~~~i~~v~wspdg~~~av~~g~~~ 218 (434)
|.+- . +....+..++...+. ...+.+. ...-.+.++|+|+++.|.|..-..|
T Consensus 184 lyan--~---------w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~Wp 247 (262)
T 3nol_A 184 IFAN--V---------WQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLWP 247 (262)
T ss_dssp EEEE--E---------TTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTCS
T ss_pred EEEE--E---------ccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCCCC
Confidence 3321 1 112235555543322 1222221 1235688999999999988543343
No 253
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=97.62 E-value=0.04 Score=50.64 Aligned_cols=232 Identities=8% Similarity=-0.042 Sum_probs=118.5
Q ss_pred CCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCCCCceeeeeec-CCeeEEEEeCCCCCeEEEEecC
Q 013871 35 TGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDFPKGILYRLRV-PGVAAFEVSKAPGSHVAVFVPE 112 (434)
Q Consensus 35 ~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~~~~~~~~~~~-~~v~~~~~sp~~~~~ia~~~~~ 112 (434)
..+.+.+|... .....++|+++++++++- .++.|+.|+.... ....... .....++++|++..+++-+
T Consensus 21 ~~~~~~~~p~~----~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~---~~~~~~~~~~p~gia~~~dG~l~vad~--- 90 (306)
T 2p4o_A 21 PAKIITSFPVN----TFLENLASAPDGTIFVTNHEVGEIVSITPDGN---QQIHATVEGKVSGLAFTSNGDLVATGW--- 90 (306)
T ss_dssp CEEEEEEECTT----CCEEEEEECTTSCEEEEETTTTEEEEECTTCC---EEEEEECSSEEEEEEECTTSCEEEEEE---
T ss_pred CceEeEeCCCC----CCcceEEECCCCCEEEEeCCCCeEEEECCCCc---eEEEEeCCCCceeEEEcCCCcEEEEec---
Confidence 34555666432 122278999999877665 4679999987642 1122222 3467888998854222221
Q ss_pred CCCCCceEEEEEcCCCCCCCceeeeeeccc-ceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeee-
Q 013871 113 SKGSPASVQIYACGKDLQSQPLARRSFFRC-STVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLV- 190 (434)
Q Consensus 113 ~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~-~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v- 190 (434)
......|..++.++ ++.......... ....+...+ +..+++ +.. +...||.++..+......
T Consensus 91 -~~~~~~v~~~d~~~---g~~~~~~~~~~~~~~~g~~~~~-~~~~~v-~d~----------~~g~i~~~d~~~~~~~v~~ 154 (306)
T 2p4o_A 91 -NADSIPVVSLVKSD---GTVETLLTLPDAIFLNGITPLS-DTQYLT-ADS----------YRGAIWLIDVVQPSGSIWL 154 (306)
T ss_dssp -CTTSCEEEEEECTT---SCEEEEEECTTCSCEEEEEESS-SSEEEE-EET----------TTTEEEEEETTTTEEEEEE
T ss_pred -cCCcceEEEEcCCC---CeEEEEEeCCCccccCcccccC-CCcEEE-EEC----------CCCeEEEEeCCCCcEeEEE
Confidence 11112344444443 222111111000 001112122 233332 211 111356665443210110
Q ss_pred ---------ecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-ce---eEEe-CCcCeeEEEECCCCCeEEEEec
Q 013871 191 ---------PLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RP---ILEL-GSGPYNTVRWNPKGKFLCLAGF 256 (434)
Q Consensus 191 ---------~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~-~~---~~~~-~~~~~~~i~~SP~g~~l~~~~~ 256 (434)
....-...+.+ +|+++.+.+. ....+.|..||... .. ...+ ....-..+++.++|++++ +..
T Consensus 155 ~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~-d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~v-a~~ 230 (306)
T 2p4o_A 155 EHPMLARSNSESVFPAANGL--KRFGNFLYVS-NTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYG-ATH 230 (306)
T ss_dssp ECGGGSCSSTTCCSCSEEEE--EEETTEEEEE-ETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEE-ECB
T ss_pred ECCccccccccCCCCcCCCc--CcCCCEEEEE-eCCCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCEEE-EeC
Confidence 00111233455 8999888764 55567999999863 11 1111 112345689999998654 443
Q ss_pred CCCCCeEEEEEccCCEE--EEEeeC--CCceEEEEC---CCCCEEEEEEc
Q 013871 257 GNLPGDMAFWDYVDGKQ--LGTTRA--ECSVTSEWS---PDGRYFMTATT 299 (434)
Q Consensus 257 ~~~~g~i~iwd~~~~~~--i~~~~~--~~~~~~~ws---pdg~~l~tas~ 299 (434)
+ .+.|.++|.. ++. +..+.. ..++.++|. ||+..|+.++.
T Consensus 231 ~--~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~ 277 (306)
T 2p4o_A 231 I--YNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTN 277 (306)
T ss_dssp T--TCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred C--CCeEEEECCC-CCEEEEeecccccCCceEEEEecccCCCCEEEEECC
Confidence 3 3689999976 544 323332 367789999 89888887776
No 254
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.62 E-value=0.0009 Score=69.57 Aligned_cols=228 Identities=5% Similarity=-0.112 Sum_probs=117.5
Q ss_pred CCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe--cCCeEEEEeCCCC----CCceeeeeecCCeeEEEE
Q 013871 25 EKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM--ATNEIQFFDTTDF----PKGILYRLRVPGVAAFEV 98 (434)
Q Consensus 25 d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~--~~~~i~v~~~~~~----~~~~~~~~~~~~v~~~~~ 98 (434)
...|++.++.+++....+... .....++|.+++..|... ..+.|+.+++... .........+.....+++
T Consensus 385 ~~~I~~id~~~~~~~~~~~~~----~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glav 460 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIPNL----RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAV 460 (699)
T ss_dssp TTC-CEECTTSCCEECCSCCC----TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEEC
T ss_pred ccceEEEeCCCCcceeeeccC----cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEE
Confidence 356777787766543322221 223378999877766655 3469999988641 111111111223445666
Q ss_pred eCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEE
Q 013871 99 SKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLN 178 (434)
Q Consensus 99 sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~ 178 (434)
.+.++.+ +|. + ...+.|.++++.. ................+++.|.+..|++. . ... ...|+
T Consensus 461 D~~~g~L--Y~t-D--~~~~~I~v~d~dg---~~~~~l~~~~~~~P~giavDp~~g~ly~t-d--~~~-------~~~I~ 522 (699)
T 1n7d_A 461 DWIHSNI--YWT-D--SVLGTVSVADTKG---VKRKTLFREQGSKPRAIVVDPVHGFMYWT-D--WGT-------PAKIK 522 (699)
T ss_dssp CCSSSBC--EEC-C--TTTSCEEEEBSSS---CCEEEECCCSSCCCCCEECCSSSSCCEEC-C--CSS-------SCCEE
T ss_pred EeeCCcE--EEE-e--ccCCeEEEEecCC---CceEEEEeCCCCCcceEEEccCCCcEEEc-c--cCC-------CCeEE
Confidence 6542322 222 1 2234677777643 11111111111223456777766655432 1 100 12356
Q ss_pred EEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeEEeCC-----cCeeEEEECCCCCeEEE
Q 013871 179 YLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGS-----GPYNTVRWNPKGKFLCL 253 (434)
Q Consensus 179 ~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~~~~-----~~~~~i~~SP~g~~l~~ 253 (434)
.++..+.....+....-..-+.|+|+|++..|.++ ....+.|..+|+.+.....+.. ..-..|++ ++..|++
T Consensus 523 ~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~a-D~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glav--d~~~lyw 599 (699)
T 1n7d_A 523 KGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWV-DSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV--FEDKVFW 599 (699)
T ss_dssp BCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEE-ETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEE--ETTEEEE
T ss_pred EEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEE-ecCCCeEEEEccCCCceEEEEecCCcCCCceEeEE--ECCEEEE
Confidence 66655543222211112334689999998877764 4556799999987654443321 11223444 3456666
Q ss_pred EecCCCCCeEEEEEccCCEEEEEeeC
Q 013871 254 AGFGNLPGDMAFWDYVDGKQLGTTRA 279 (434)
Q Consensus 254 ~~~~~~~g~i~iwd~~~~~~i~~~~~ 279 (434)
+..++ +.|..+|..+++.+..+..
T Consensus 600 td~~~--~~V~~~d~~~G~~~~~i~~ 623 (699)
T 1n7d_A 600 TDIIN--EAIFSANRLTGSDVNLLAE 623 (699)
T ss_dssp ECSTT--TCEEEEETTTEEEEECCCT
T ss_pred EeCCC--CeEEEEEccCCCceEEeec
Confidence 66543 6899999888877766643
No 255
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.60 E-value=0.0057 Score=59.61 Aligned_cols=133 Identities=11% Similarity=0.133 Sum_probs=82.2
Q ss_pred eEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCC----CeEEEEeccccee--EEe-CCcCeeEEEECCCC
Q 013871 176 KLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMP----ASATIFNKKCRPI--LEL-GSGPYNTVRWNPKG 248 (434)
Q Consensus 176 ~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~----~~v~l~d~~~~~~--~~~-~~~~~~~i~~SP~g 248 (434)
.|+.++..+.....+ .........++|+++|+.+.+. .... ..+.+++..+... ..+ .....+.++++|++
T Consensus 160 ~I~~id~~~~~v~~~-~~~~~~P~~ia~d~~G~~lyva-d~~~~~~~~~v~~~~~~g~~~~~~~l~~~~~p~giavdp~~ 237 (430)
T 3tc9_A 160 PTRLIDFEKEYVSTV-YSGLSKVRTICWTHEADSMIIT-NDQNNNDRPNNYILTRESGFKVITELTKGQNCNGAETHPIN 237 (430)
T ss_dssp EEEEEETTTTEEEEE-ECCCSCEEEEEECTTSSEEEEE-ECCSCTTSEEEEEEEGGGTSCSEEEEEECSSCCCEEECTTT
T ss_pred cEEEEECCCCEEEEE-ecCCCCcceEEEeCCCCEEEEE-eCCCCcccceEEEEeCCCceeeeeeeccCCCceEEEEeCCC
Confidence 466666655432222 2234557899999999977664 3311 1345555443221 222 12345778999944
Q ss_pred CeEEEEecCCCCCeEEEEEccCCEEEEEee--C-CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc
Q 013871 249 KFLCLAGFGNLPGDMAFWDYVDGKQLGTTR--A-ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS 317 (434)
Q Consensus 249 ~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~--~-~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~ 317 (434)
..|.++..++ +.|..+|..++....... . .....++|+|+|++|+.+... .+.|..+++++.
T Consensus 238 g~lyv~d~~~--~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~-----~~~I~~~~~d~~ 302 (430)
T 3tc9_A 238 GELYFNSWNA--GQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVN-----QHYILRSDYDWK 302 (430)
T ss_dssp CCEEEEETTT--TEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETT-----TTEEEEEEEETT
T ss_pred CEEEEEECCC--CEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECC-----CCEEEEEeCCcc
Confidence 4455555443 799999998776422222 2 246679999999977777653 788999998763
No 256
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=97.59 E-value=0.00012 Score=69.92 Aligned_cols=62 Identities=6% Similarity=0.045 Sum_probs=39.1
Q ss_pred CCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCCC
Q 013871 10 VGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDFP 81 (434)
Q Consensus 10 ~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~~ 81 (434)
++..|++.+ .|+.|..||..+|+.+.++.. . ... +..+..++..++.+ .++.|..||..+..
T Consensus 8 ~~~~v~~gs-----~dg~v~a~d~~tG~~~W~~~~-~---~~~-s~p~~~~g~~~v~~s~dg~l~a~d~~tG~ 70 (369)
T 2hz6_A 8 PETLLFVST-----LDGSLHAVSKRTGSIKWTLKE-D---PVL-QVPTHVEEPAFLPDPNDGSLYTLGSKNNE 70 (369)
T ss_dssp CTTEEEEEE-----TTSEEEEEETTTCCEEEEEEC-C---CSC-CCC-----CCEEECTTTCCEEEC-----C
T ss_pred eCCEEEEEc-----CCCEEEEEECCCCCEEEEecC-C---Cce-ecceEcCCCEEEEeCCCCEEEEEECCCCc
Confidence 577888877 789999999999999988765 2 222 34456677666664 67899999986644
No 257
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.57 E-value=0.063 Score=52.17 Aligned_cols=139 Identities=9% Similarity=0.011 Sum_probs=69.7
Q ss_pred ceEEecCC---CcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCC-----eEEE
Q 013871 3 LLLTCLRV---GLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATN-----EIQF 74 (434)
Q Consensus 3 ~~l~fSP~---g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~-----~i~v 74 (434)
..|+|+|+ |+..++-. . +.|+.+|..+++... +.... .....++|+++|+++++...+ .+..
T Consensus 142 ~gvavd~~s~~g~Lyv~D~-----~-~~I~~id~~~g~v~~-~~~~~---~~P~giavd~dG~lyVad~~~~~~~~gv~~ 211 (433)
T 4hw6_A 142 WRMMFDPNSNYDDLYWVGQ-----R-DAFRHVDFVNQYVDI-KTTNI---GQCADVNFTLNGDMVVVDDQSSDTNTGIYL 211 (433)
T ss_dssp CEEEECTTTTTCEEEEECB-----T-SCEEEEETTTTEEEE-ECCCC---SCEEEEEECTTCCEEEEECCSCTTSEEEEE
T ss_pred ceEEEccccCCCEEEEEeC-----C-CCEEEEECCCCEEEE-eecCC---CCccEEEECCCCCEEEEcCCCCcccceEEE
Confidence 47899995 55444422 1 789999988876543 33211 223378999999955554321 2333
Q ss_pred EeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeec--ccceeEEEECCC
Q 013871 75 FDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFF--RCSTVQLNWNRG 152 (434)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~--~~~~~~~~ws~~ 152 (434)
++...........-.......++++|..+.+ |+.+. ..+.|..++..+ +......... ......+.|+|+
T Consensus 212 ~~~~~~~~~~~~~~~~~~P~giavd~~~G~l---yv~d~--~~~~V~~~d~~~---g~~~~~~~~~~~~~~~~~ia~dpd 283 (433)
T 4hw6_A 212 FTRASGFTERLSLCNARGAKTCAVHPQNGKI---YYTRY--HHAMISSYDPAT---GTLTEEEVMMDTKGSNFHIVWHPT 283 (433)
T ss_dssp ECGGGTTCCEEEEEECSSBCCCEECTTTCCE---EECBT--TCSEEEEECTTT---CCEEEEEEECSCCSSCEEEEECTT
T ss_pred EECCCCeeccccccccCCCCEEEEeCCCCeE---EEEEC--CCCEEEEEECCC---CeEEEEEeccCCCCCcccEEEeCC
Confidence 3332211100111123445667888842332 22221 224566666543 2221111111 111235999999
Q ss_pred CCeEEEE
Q 013871 153 STGLLAV 159 (434)
Q Consensus 153 G~~l~~~ 159 (434)
|+.|.+.
T Consensus 284 G~~LYva 290 (433)
T 4hw6_A 284 GDWAYII 290 (433)
T ss_dssp SSEEEEE
T ss_pred CCEEEEE
Confidence 9976653
No 258
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.55 E-value=0.047 Score=50.65 Aligned_cols=223 Identities=7% Similarity=-0.049 Sum_probs=118.1
Q ss_pred CCcEEEEEcCCCc--EEEEEeecCcCCCCCCeeeecCCCcEEEEe--cCCeEEEEeCCCCCC-ceeeeeecCCeeEEEEe
Q 013871 25 EKNVILWKTETGE--AVYQLFQKNMTKTTWPSIRFSSDEAVACRM--ATNEIQFFDTTDFPK-GILYRLRVPGVAAFEVS 99 (434)
Q Consensus 25 d~~v~iWd~~~g~--~~~~~~~~~~~~~~~~~~~~S~d~~~la~~--~~~~i~v~~~~~~~~-~~~~~~~~~~v~~~~~s 99 (434)
...|+..++.... ....+.... ..+ .+.|.+.+..|... .++.|+.++...... .......+.....+++.
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~~~~---~~~-~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd 87 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVGGLE---DAA-AVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACD 87 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEEEEE---EEE-EEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEE
T ss_pred cCeEEEEECCCCceEEEEEecCCC---ccE-EEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEE
Confidence 4678899987653 111111111 233 78999866555444 457999999865421 11222223456677887
Q ss_pred CCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEE
Q 013871 100 KAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNY 179 (434)
Q Consensus 100 p~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~ 179 (434)
+.++. + +|... ....|.++++.. .............-..+...|.+..|.+. .. .. ...|+.
T Consensus 88 ~~~g~-l-y~~d~---~~~~I~~~~~dG---~~~~~l~~~~~~~P~giavdp~~g~ly~t-d~--~~-------~~~I~r 149 (318)
T 3sov_A 88 WLGEK-L-YWTDS---ETNRIEVSNLDG---SLRKVLFWQELDQPRAIALDPSSGFMYWT-DW--GE-------VPKIER 149 (318)
T ss_dssp TTTTE-E-EEEET---TTTEEEEEETTS---CSCEEEECSSCSSEEEEEEEGGGTEEEEE-EC--SS-------SCEEEE
T ss_pred cCCCe-E-EEEEC---CCCEEEEEECCC---CcEEEEEeCCCCCccEEEEeCCCCEEEEE-ec--CC-------CCEEEE
Confidence 65332 2 23221 235777777654 11111111111223456666665555432 11 00 124677
Q ss_pred EeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeEEeC---CcCeeEEEECCCCCeEEEEec
Q 013871 180 LTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELG---SGPYNTVRWNPKGKFLCLAGF 256 (434)
Q Consensus 180 l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~~~---~~~~~~i~~SP~g~~l~~~~~ 256 (434)
++.+|.....+....-..-+.++|+|++..+.++ ....+.|..+|..+.....+. ...-..+++. +..+..+..
T Consensus 150 ~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~a-D~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~--~~~lywtd~ 226 (318)
T 3sov_A 150 AGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWA-DAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLF--EDILYWTDW 226 (318)
T ss_dssp EETTSCSCEEEECSSCSCEEEEEEETTTTEEEEE-ETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEE--TTEEEEEET
T ss_pred EEcCCCCeEEEEECCCCCccEEEEeccCCEEEEE-ECCCCEEEEEcCCCCceEEEecCCCCCceEEEEe--CCEEEEEec
Confidence 7776653222211222345789999988888874 455679999998764443331 2223445553 445555554
Q ss_pred CCCCCeEEEEEccCCEEE
Q 013871 257 GNLPGDMAFWDYVDGKQL 274 (434)
Q Consensus 257 ~~~~g~i~iwd~~~~~~i 274 (434)
++ +.|..+|..+++.+
T Consensus 227 ~~--~~V~~~~~~~G~~~ 242 (318)
T 3sov_A 227 ST--HSILACNKYTGEGL 242 (318)
T ss_dssp TT--TEEEEEETTTCCSC
T ss_pred CC--CeEEEEECCCCCce
Confidence 43 67888887666443
No 259
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=97.55 E-value=0.0045 Score=57.18 Aligned_cols=177 Identities=11% Similarity=0.077 Sum_probs=103.2
Q ss_pred EEECCCCCeEEEEEEecccccCcee--ecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEE--ccCCCeEE
Q 013871 147 LNWNRGSTGLLAVAQSDVDKTNQSY--YGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVY--GFMPASAT 222 (434)
Q Consensus 147 ~~ws~~G~~l~~~~~~~~d~~~~~~--~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~--g~~~~~v~ 222 (434)
-.++++|.+|.++...+.......+ .....|+.+++.+.....+. ..+. ..|+++++.++.+. ......|.
T Consensus 58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~---~~~~--~~~s~~g~~Iy~~~~~~~~~~~Iy 132 (302)
T 3s25_A 58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLD---PDPC--IYASLIGNYIYYLHYDTQTATSLY 132 (302)
T ss_dssp EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEE---CSCE--EEEEEETTEEEEEEESSSSCEEEE
T ss_pred eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEee---cCCc--cEEEEeCCEEEEEeecCCCCceEE
Confidence 4568999999887543221111111 12346889988887533332 2232 37888999999754 12344677
Q ss_pred EEecccceeEEeCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceEEEECCCCCEEEEEEcCCc
Q 013871 223 IFNKKCRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPR 302 (434)
Q Consensus 223 l~d~~~~~~~~~~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~~~wspdg~~l~tas~~pr 302 (434)
..++.+.....+..... ..|+|+|+.|...+.+ ...|+..++..+.....+.+.. ...++|+|.+|+.....
T Consensus 133 ~~~~dGs~~~~lt~~~~--~~~~~~g~~iy~t~~g--~~~Iy~~~l~g~~~~~l~~~~~--~~~~~P~g~~iy~t~~~-- 204 (302)
T 3s25_A 133 RIRIDGEEKKKIKNHYL--FTCNTSDRYFYYNNPK--NGQLYRYDTASQSEALFYDCNC--YKPVVLDDTNVYYMDVN-- 204 (302)
T ss_dssp EEETTSCCCEEEESSCC--CCSEEETTEEEEECTT--TCCEEEEETTTTEEEEEECSCE--EEEEEEETTEEEEEEGG--
T ss_pred EEECCCCCeEEEeCCCc--eEeeEECCEEEEEeCC--CceEEEEECCCCCEEEEeCCCc--cceeeecCCEEEEEEcC--
Confidence 77777655555533333 5678999999887653 3689999988775444344322 23456999999987651
Q ss_pred eeeCC-cEEEEeecCceeeeeecccceeeEEEcCCCCCCC
Q 013871 303 LQIDN-GIKIFHHNGSLFFKKMFDKLFQAEWKPVSPDKFG 341 (434)
Q Consensus 303 l~~D~-~i~iw~~~g~~~~~~~~~~~~~~~w~p~~~~~~~ 341 (434)
++ .|..-+++|..........+ ..|.|.+..|+-
T Consensus 205 ---~~~~I~~~~ldG~~~~~Lt~~~~--~~~~~~g~~Iy~ 239 (302)
T 3s25_A 205 ---RDNAIVHVNINNPNPVVLTEANI--EHYNVYGSLIFY 239 (302)
T ss_dssp ---GTTEEEEECSSSCCCEECSCSCE--EEEEEETTEEEE
T ss_pred ---CCcEEEEEECCCCCeEEEeCCCc--ceEEECCCEEEE
Confidence 22 34444456654333222222 336776666653
No 260
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=97.54 E-value=0.1 Score=54.78 Aligned_cols=269 Identities=8% Similarity=0.050 Sum_probs=143.4
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCC-CCeeeecCCCcEEEEecCCeEEEEeCCCC
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTT-WPSIRFSSDEAVACRMATNEIQFFDTTDF 80 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~-~~~~~~S~d~~~la~~~~~~i~v~~~~~~ 80 (434)
|++|...++|+..+... ..|.+||..+++.. .+.... .... +.++...+++.+.+...++.|..|+....
T Consensus 133 i~~i~~d~~g~lwi~t~-------~gl~~~~~~~~~~~-~~~~~~-~~~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~ 203 (795)
T 4a2l_A 133 VNGIEEISPEQLLISTP-------EGLIMFDIKESKFI-DDSFST-AMHKTIASTLYRQGDQIYIGTSTDGLYTYSITQK 203 (795)
T ss_dssp CCEEEEEETTEEEEEET-------TEEEEEETTTTEEE-CSSSCH-HHHTCCEEEEEEETTEEEEEESSSCEEEEETTTC
T ss_pred EEEEEECCCCCEEEEEC-------CceEEEECCCCEEE-eccCCC-CCCcceEEEEECCCCCEEEEECCCCEEEEeCCCC
Confidence 56777778887665422 45888887766432 221100 0012 54677777888777555557888987553
Q ss_pred CCcee-eeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeee--------ecccceeEEEECC
Q 013871 81 PKGIL-YRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRS--------FFRCSTVQLNWNR 151 (434)
Q Consensus 81 ~~~~~-~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~--------~~~~~~~~~~ws~ 151 (434)
..... .......|.++...+++.-.++ ... .-+.+|+..+ .+ +.... .....+.++...+
T Consensus 204 ~~~~~~~~~~~~~i~~i~~d~~g~lwig--t~~-----~Gl~~~~~~~---~~-~~~~~~~~~~~~~l~~~~i~~i~~d~ 272 (795)
T 4a2l_A 204 TFEKVIPILGTKQIQAILQQSPTRIWVA--TEG-----AGLFLINPKT---KE-IKNYLHSPSNPKSISSNYIRSLAMDS 272 (795)
T ss_dssp CEEECC----CCCEEEEEEEETTEEEEE--EBS-----SCEEEEETTT---TE-EEEECCCTTCTTSCSCSBEEEEEECT
T ss_pred eEEEecCCCCCCeeEEEEEcCCCCEEEE--ECC-----CCeEEEeCCC---Ce-EEEeecCCCCccccCCCeEEEEEEcC
Confidence 21110 0011234555555544211111 111 1245555432 11 11111 1112344555566
Q ss_pred CCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecC-------CCCCeEEEEECcCCCEEEEEEccCCCeEEEE
Q 013871 152 GSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR-------KEGPVHDVQWSYSGSEFAVVYGFMPASATIF 224 (434)
Q Consensus 152 ~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~-------~~~~i~~v~wspdg~~~av~~g~~~~~v~l~ 224 (434)
+|... +.+. .+|+.++.....-..+... ....|.++...++|..-+ |...+-+..|
T Consensus 273 ~g~lW-igt~-------------~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWi---gt~~~Gl~~~ 335 (795)
T 4a2l_A 273 QNRLW-IGTF-------------NDLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMWL---GTYFGGLNYY 335 (795)
T ss_dssp TSCEE-EEES-------------SCEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEEE---EESSSCEEEE
T ss_pred CCCEE-EEeC-------------ChhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEEE---EECCCCeEEe
Confidence 66532 2210 1244444332211111100 135799999999887655 5555678888
Q ss_pred ecccceeEEe---------CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEe----------eCCCceEE
Q 013871 225 NKKCRPILEL---------GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTT----------RAECSVTS 285 (434)
Q Consensus 225 d~~~~~~~~~---------~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~----------~~~~~~~~ 285 (434)
|........+ ....|.++...++|++.+ |. .++-|..||..+++..... ....+..+
T Consensus 336 ~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lWi-Gt---~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i 411 (795)
T 4a2l_A 336 HPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNLWI-GT---NDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAV 411 (795)
T ss_dssp CGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCEEE-EE---SSSCEEEECTTTCCEEEECCC------CCSCSCEEEE
T ss_pred CCCcccceEEcCCCCCCCCCCCeeEEEEECCCCCEEE-EE---CCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEE
Confidence 8765443322 234588999999998655 44 2346999998876443221 12345567
Q ss_pred EECCCCCEEEEEEcCCceeeCCcEEEEeecCc
Q 013871 286 EWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS 317 (434)
Q Consensus 286 ~wspdg~~l~tas~~prl~~D~~i~iw~~~g~ 317 (434)
...++|+.|..|+. ++++.+|+..+.
T Consensus 412 ~~d~~g~~lWigt~------~~Gl~~~d~~~~ 437 (795)
T 4a2l_A 412 YVDEKKSLVYIGTH------AGGLSILHRNSG 437 (795)
T ss_dssp EEETTTTEEEEEET------TTEEEEEETTTC
T ss_pred EEcCCCCEEEEEeC------cCceeEEeCCCC
Confidence 88889986677777 788888887543
No 261
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.50 E-value=0.076 Score=50.98 Aligned_cols=226 Identities=5% Similarity=-0.117 Sum_probs=119.0
Q ss_pred CCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe--cCCeEEEEeCCCCC----CceeeeeecCCeeEEEE
Q 013871 25 EKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM--ATNEIQFFDTTDFP----KGILYRLRVPGVAAFEV 98 (434)
Q Consensus 25 d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~--~~~~i~v~~~~~~~----~~~~~~~~~~~v~~~~~ 98 (434)
...|+..++............ .....++|.+.+..|... ..+.|+.+++.... ..............+++
T Consensus 91 ~~~I~~i~l~~~~~~~~~~~~----~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glav 166 (400)
T 3p5b_L 91 RHEVRKMTLDRSEYTSLIPNL----RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAV 166 (400)
T ss_dssp TTEEEEECTTSCSCEEEECSC----SCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEE
T ss_pred cceeEEEccCCcceeEecccc----CcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEE
Confidence 356777777655433222221 233388999866655554 45789999876521 11111112345677888
Q ss_pred eCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEE
Q 013871 99 SKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLN 178 (434)
Q Consensus 99 sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~ 178 (434)
.+.++ .| +|... ..+.|.+.++.. ..........-.....+...|.+..|.+. .. .. ...|+
T Consensus 167 D~~~~-~l-Y~~d~---~~~~I~~~~~~g---~~~~~l~~~~~~~P~~iavdp~~g~ly~t-d~--~~-------~~~I~ 228 (400)
T 3p5b_L 167 DWIHS-NI-YWTDS---VLGTVSVADTKG---VKRKTLFRENGSKPRAIVVDPVHGFMYWT-DW--GT-------PAKIK 228 (400)
T ss_dssp ETTTT-EE-EEEET---TTTEEEEECTTT---CSEEEEEECSSCCEEEEEEETTTTEEEEE-EC--SS-------SCCEE
T ss_pred EecCC-ce-EEEEC---CCCeEEEEeCCC---CceEEEEeCCCCCcceEEEecccCeEEEE-eC--CC-------CCEEE
Confidence 77422 22 22221 224677776653 22111111111224467777766665442 11 11 12467
Q ss_pred EEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeEEeC-----CcCeeEEEECCCCCeEEE
Q 013871 179 YLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELG-----SGPYNTVRWNPKGKFLCL 253 (434)
Q Consensus 179 ~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~~~-----~~~~~~i~~SP~g~~l~~ 253 (434)
.++.+|.....+....-...+.++++|++..+.++ ......|..+|+.+.....+. ...-..|+. ++..|+.
T Consensus 229 ~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~a-D~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v--~~~~lyw 305 (400)
T 3p5b_L 229 KGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWV-DSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV--FEDKVFW 305 (400)
T ss_dssp EEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEE-ETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEE--ETTEEEE
T ss_pred EEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEE-ECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEE--eCCEEEE
Confidence 77777754333322222456889999998888874 445679999999765444331 112234444 4556666
Q ss_pred EecCCCCCeEEEEEccCCEEEEEe
Q 013871 254 AGFGNLPGDMAFWDYVDGKQLGTT 277 (434)
Q Consensus 254 ~~~~~~~g~i~iwd~~~~~~i~~~ 277 (434)
+..++ +.|..+|..+++.+..+
T Consensus 306 td~~~--~~V~~~~~~~G~~~~~i 327 (400)
T 3p5b_L 306 TDIIN--EAIFSANRLTGSDVNLL 327 (400)
T ss_dssp EESSS--CSEEEEESSSCCCCEEE
T ss_pred ecCCC--CeEEEEEcCCCCceEEE
Confidence 65443 57777776666444433
No 262
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.45 E-value=0.039 Score=53.65 Aligned_cols=158 Identities=8% Similarity=0.131 Sum_probs=87.4
Q ss_pred CeeEEEEeC-CCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCce
Q 013871 92 GVAAFEVSK-APGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQS 170 (434)
Q Consensus 92 ~v~~~~~sp-~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~ 170 (434)
....++++| +.+. | |+.+.. ..|+.+++.. . .+............+.|+++|+.|++.- .... ...
T Consensus 138 ~P~~lavdp~~~g~-L--yv~d~~---~~I~~id~~~---~-~v~~~~~~~~~P~~ia~d~~G~~lyvad-~~~~-~~~- 204 (430)
T 3tc9_A 138 GAVWLSFDPKNHNH-L--YLVGEQ---HPTRLIDFEK---E-YVSTVYSGLSKVRTICWTHEADSMIITN-DQNN-NDR- 204 (430)
T ss_dssp CCCEEEEETTEEEE-E--EEEEBT---EEEEEEETTT---T-EEEEEECCCSCEEEEEECTTSSEEEEEE-CCSC-TTS-
T ss_pred CCCEEEECCCCCCe-E--EEEeCC---CcEEEEECCC---C-EEEEEecCCCCcceEEEeCCCCEEEEEe-CCCC-ccc-
Confidence 456778887 3222 2 222221 6777777754 2 2322222334567899999999766542 1110 110
Q ss_pred eecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeE---EeCC-cCeeEEEECC
Q 013871 171 YYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPIL---ELGS-GPYNTVRWNP 246 (434)
Q Consensus 171 ~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~---~~~~-~~~~~i~~SP 246 (434)
..++.+...+.......+......+.++++|++..+.+ +....++|..||..+..+. .... ..-+.|+|+|
T Consensus 205 ----~~v~~~~~~g~~~~~~~l~~~~~p~giavdp~~g~lyv-~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~p 279 (430)
T 3tc9_A 205 ----PNNYILTRESGFKVITELTKGQNCNGAETHPINGELYF-NSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHP 279 (430)
T ss_dssp ----EEEEEEEGGGTSCSEEEEEECSSCCCEEECTTTCCEEE-EETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECT
T ss_pred ----ceEEEEeCCCceeeeeeeccCCCceEEEEeCCCCEEEE-EECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcC
Confidence 12333333333221111112234578999994334443 3445679999998765442 2222 2356899999
Q ss_pred CCCeEEEEecCCCCCeEEEEEcc
Q 013871 247 KGKFLCLAGFGNLPGDMAFWDYV 269 (434)
Q Consensus 247 ~g~~l~~~~~~~~~g~i~iwd~~ 269 (434)
+|++|.++...+ +.|..+|.+
T Consensus 280 dG~~lyv~d~~~--~~I~~~~~d 300 (430)
T 3tc9_A 280 SGNYAYIVVVNQ--HYILRSDYD 300 (430)
T ss_dssp TSSEEEEEETTT--TEEEEEEEE
T ss_pred CCCEEEEEECCC--CEEEEEeCC
Confidence 999777776543 689998766
No 263
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=97.43 E-value=0.072 Score=50.25 Aligned_cols=242 Identities=12% Similarity=0.077 Sum_probs=117.5
Q ss_pred CCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCCCceeeeeecCC-e------eEE
Q 013871 24 QEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPKGILYRLRVPG-V------AAF 96 (434)
Q Consensus 24 ~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~-v------~~~ 96 (434)
.++.|..+|..+|+.+.++.... .....+.. .++.+++...++.|..+|..+... ..+..... + ...
T Consensus 111 ~~g~l~a~d~~tG~~~W~~~~~~---~~~~~p~~-~~~~v~v~~~~g~l~~~d~~tG~~--~W~~~~~~~~~~~~~~~~~ 184 (376)
T 3q7m_A 111 EKAQVYALNTSDGTVAWQTKVAG---EALSRPVV-SDGLVLIHTSNGQLQALNEADGAV--KWTVNLDMPSLSLRGESAP 184 (376)
T ss_dssp TTSEEEEEETTTCCEEEEEECSS---CCCSCCEE-ETTEEEEECTTSEEEEEETTTCCE--EEEEECCC-----CCCCCC
T ss_pred CCCEEEEEECCCCCEEEEEeCCC---ceEcCCEE-ECCEEEEEcCCCeEEEEECCCCcE--EEEEeCCCCceeecCCCCc
Confidence 56889999999999987776542 11112222 256555555678999999876542 22222211 1 111
Q ss_pred EEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccc-e---eE---EEECC--CCCeEEEEEEeccccc
Q 013871 97 EVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCS-T---VQ---LNWNR--GSTGLLAVAQSDVDKT 167 (434)
Q Consensus 97 ~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~-~---~~---~~ws~--~G~~l~~~~~~~~d~~ 167 (434)
.... .. +|+. ...+.+..++..+ ++.+-........ . .. +.-.| .+..+++.. .
T Consensus 185 ~~~~---~~--v~~g---~~~g~l~~~d~~t---G~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~---~--- 247 (376)
T 3q7m_A 185 TTAF---GA--AVVG---GDNGRVSAVLMEQ---GQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALA---Y--- 247 (376)
T ss_dssp EEET---TE--EEEC---CTTTEEEEEETTT---CCEEEEEECCC-----------CCCCCCEEETTEEEEEC---T---
T ss_pred EEEC---CE--EEEE---cCCCEEEEEECCC---CcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEe---c---
Confidence 1111 11 1221 2234566666654 3333222211000 0 00 00000 122222211 0
Q ss_pred CceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-cceeEEeC---CcCeeEEE
Q 013871 168 NQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILELG---SGPYNTVR 243 (434)
Q Consensus 168 ~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~-~~~~~~~~---~~~~~~i~ 243 (434)
...|+.++...+... -... ......+.. ++..+.+ +..++.+..+|.+ ++.+.... ........
T Consensus 248 ------~g~l~~~d~~tG~~~-w~~~-~~~~~~~~~--~~~~l~~--~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~ 315 (376)
T 3q7m_A 248 ------NGNLTALDLRSGQIM-WKRE-LGSVNDFIV--DGNRIYL--VDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPV 315 (376)
T ss_dssp ------TSCEEEEETTTCCEE-EEEC-CCCEEEEEE--ETTEEEE--EETTCCEEEEETTTCCEEEEECTTTTSCCCCCE
T ss_pred ------CcEEEEEECCCCcEE-eecc-CCCCCCceE--ECCEEEE--EcCCCeEEEEECCCCcEEEeecccCCCcccCCE
Confidence 113555554332111 1111 122333433 3455554 3446789999985 44444432 12222222
Q ss_pred ECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceE-EEECCCCCEEEEEEcCCceeeCCcEEEEe
Q 013871 244 WNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVT-SEWSPDGRYFMTATTAPRLQIDNGIKIFH 313 (434)
Q Consensus 244 ~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~-~~wspdg~~l~tas~~prl~~D~~i~iw~ 313 (434)
. .+..|++++ .+|.|+++|.++++.+...... .+.. ... .+..|+.++. ++.+..|+
T Consensus 316 ~--~~~~l~v~~---~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~--~~~~l~v~~~------~G~l~~~~ 375 (376)
T 3q7m_A 316 L--YNGNLVVGD---SEGYLHWINVEDGRFVAQQKVDSSGFQTEPVA--ADGKLLIQAK------DGTVYSIT 375 (376)
T ss_dssp E--ETTEEEEEC---TTSEEEEEETTTCCEEEEEECCTTCBCSCCEE--ETTEEEEEBT------TSCEEEEE
T ss_pred E--ECCEEEEEe---CCCeEEEEECCCCcEEEEEecCCCcceeCCEE--ECCEEEEEeC------CCEEEEEe
Confidence 2 245666676 4579999999999988777652 2211 222 2456777777 88888876
No 264
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.43 E-value=0.0043 Score=55.08 Aligned_cols=157 Identities=10% Similarity=0.065 Sum_probs=96.0
Q ss_pred cceeEEEEeeCCcc-eeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-cceeEEeCCcCeeEEEECCCCCe
Q 013871 173 GESKLNYLTTDGTH-EGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILELGSGPYNTVRWNPKGKF 250 (434)
Q Consensus 173 g~~~l~~l~~~~~~-~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~-~~~~~~~~~~~~~~i~~SP~g~~ 250 (434)
|...|..++...+. ...+.+. .........++++++.++ ...++.+.+||.+ .+.+.++.... ......++|+.
T Consensus 41 g~S~v~~vD~~tgkv~~~~~l~--~~~fgeGi~~~~~~ly~l-tw~~~~v~v~D~~tl~~~~ti~~~~-~Gwglt~dg~~ 116 (243)
T 3mbr_X 41 GRSSVRKVDLETGRILQRAEVP--PPYFGAGIVAWRDRLIQL-TWRNHEGFVYDLATLTPRARFRYPG-EGWALTSDDSH 116 (243)
T ss_dssp TSCEEEEEETTTCCEEEEEECC--TTCCEEEEEEETTEEEEE-ESSSSEEEEEETTTTEEEEEEECSS-CCCEEEECSSC
T ss_pred CCceEEEEECCCCCEEEEEeCC--CCcceeEEEEeCCEEEEE-EeeCCEEEEEECCcCcEEEEEeCCC-CceEEeeCCCE
Confidence 33456666665432 2333443 233333334456777775 4567899999996 45555553211 22344467887
Q ss_pred EEEEecCCCCCeEEEEEccCCEEEEEeeCC-------CceEEEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceeeee
Q 013871 251 LCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-------CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKK 322 (434)
Q Consensus 251 l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-------~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~-~g~~~~~~ 322 (434)
|.++.. .+.|.++|.++.+.+..+.-. ....++|. +|+.++..-. ++.|.+-|. +|+.+...
T Consensus 117 L~vSdg---s~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~------s~~I~vIDp~tG~V~~~i 186 (243)
T 3mbr_X 117 LYMSDG---TAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWL------TSRIARIDPASGKVVAWI 186 (243)
T ss_dssp EEEECS---SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETT------TTEEEEECTTTCBEEEEE
T ss_pred EEEECC---CCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECC------CCeEEEEECCCCCEEEEE
Confidence 777652 369999999999877766431 33457777 7775544334 667777776 45544443
Q ss_pred ec---------------ccceeeEEEcCCCCCCCCc
Q 013871 323 MF---------------DKLFQAEWKPVSPDKFGDI 343 (434)
Q Consensus 323 ~~---------------~~~~~~~w~p~~~~~~~~~ 343 (434)
.. +.+..++|.|....+|-.+
T Consensus 187 dl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 187 DLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp ECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred ECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 21 2567899999988888775
No 265
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.42 E-value=0.096 Score=50.25 Aligned_cols=235 Identities=10% Similarity=-0.087 Sum_probs=127.8
Q ss_pred cEEEEecCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceee-eeec
Q 013871 62 AVACRMATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLAR-RSFF 140 (434)
Q Consensus 62 ~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~-~~~~ 140 (434)
.+|+....+.|+..++..... .........+..++|++.. ..| +|.... ...|..+++........... ....
T Consensus 84 ~~ll~~~~~~I~~i~l~~~~~-~~~~~~~~~~~~l~~d~~~-~~l-ywsD~~---~~~I~~~~~~g~~~~~~~~~~~~~~ 157 (400)
T 3p5b_L 84 AYLFFTNRHEVRKMTLDRSEY-TSLIPNLRNVVALDTEVAS-NRI-YWSDLS---QRMICSTQLDRAHGVSSYDTVISRD 157 (400)
T ss_dssp CEEEEEETTEEEEECTTSCSC-EEEECSCSCEEEEEEETTT-TEE-EEEETT---TTEEEEEEC------CCCEEEECSS
T ss_pred ceeEEeccceeEEEccCCcce-eEeccccCcceEEeeeecc-Cce-EEEecC---CCeEEEEEcccCCCCCcceEEEeCC
Confidence 466667778999999876432 1122234567889999863 333 333221 23566666543100001111 1101
Q ss_pred ccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCe
Q 013871 141 RCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPAS 220 (434)
Q Consensus 141 ~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~ 220 (434)
-.....++..+.+..|.+. +. +...|..++..+.....+....-.....++..|.+..+.+.-....+.
T Consensus 158 ~~~p~glavD~~~~~lY~~-d~----------~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~ 226 (400)
T 3p5b_L 158 IQAPDGLAVDWIHSNIYWT-DS----------VLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAK 226 (400)
T ss_dssp CSCEEEEEEETTTTEEEEE-ET----------TTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCC
T ss_pred CCCcccEEEEecCCceEEE-EC----------CCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCE
Confidence 1122344455444544432 11 112356666666533222222234468999999777777643233468
Q ss_pred EEEEecccceeEEe---CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC--EEEEEeeC--CCceEEEECCCCCE
Q 013871 221 ATIFNKKCRPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG--KQLGTTRA--ECSVTSEWSPDGRY 293 (434)
Q Consensus 221 v~l~d~~~~~~~~~---~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~--~~i~~~~~--~~~~~~~wspdg~~ 293 (434)
|..+++.+.....+ .-..-+.|+++|++..|.++..++ +.|+.+|++.. +.+..... .....++. ++..
T Consensus 227 I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~--~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v--~~~~ 302 (400)
T 3p5b_L 227 IKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKL--HSISSIDVNGGNRKTILEDEKRLAHPFSLAV--FEDK 302 (400)
T ss_dssp EEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTT--TEEEEEETTSCCCEEEEECSSTTSSEEEEEE--ETTE
T ss_pred EEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCC--CEEEEEeCCCCccEEEEeCCCCCCCCEEEEE--eCCE
Confidence 99999987655444 224568899999999998887554 68999998754 23322211 23344555 4555
Q ss_pred EEEEEcCCceeeCCcEEEEe-ecCceeeee
Q 013871 294 FMTATTAPRLQIDNGIKIFH-HNGSLFFKK 322 (434)
Q Consensus 294 l~tas~~prl~~D~~i~iw~-~~g~~~~~~ 322 (434)
|+.+... .+.|..++ .+|+.+...
T Consensus 303 lywtd~~-----~~~V~~~~~~~G~~~~~i 327 (400)
T 3p5b_L 303 VFWTDII-----NEAIFSANRLTGSDVNLL 327 (400)
T ss_dssp EEEEESS-----SCSEEEEESSSCCCCEEE
T ss_pred EEEecCC-----CCeEEEEEcCCCCceEEE
Confidence 5555442 67788887 677655443
No 266
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.41 E-value=0.17 Score=52.98 Aligned_cols=230 Identities=10% Similarity=-0.101 Sum_probs=124.2
Q ss_pred EEEEecCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCC-CCceeeeeecc
Q 013871 63 VACRMATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQ-SQPLARRSFFR 141 (434)
Q Consensus 63 ~la~~~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~-~~~i~~~~~~~ 141 (434)
+|+......|+..++..... .........+..+++.+.. ..| +|.... ...|..+++..... ...........
T Consensus 397 ~Ll~an~~~Ir~i~l~~~~~-~~l~~~~~~~~gl~~d~~~-~~l-Y~sD~~---~~~I~~~~l~g~~~~~~~~~vi~~~l 470 (791)
T 3m0c_C 397 YLFFTNRHEVRKMTLDRSEY-TSLIPNLRNVVALDTEVAS-NRI-YWSDLS---QRMICSTQLDRAHGVSSYDTVISRDI 470 (791)
T ss_dssp EEEEECBSSEEEECTTSCCC-EEEECSCSSEEEEEEETTT-TEE-EEEETT---TTEEEEEEC--------CEEEECSSC
T ss_pred ccccccccceeEeeccCCcc-eeeecCCCceEEEeecccC-Cee-EEeecc---ceeEEEEeccCCCCCcceeEEEecCC
Confidence 55555556788887765332 2222234567788888753 222 333221 24566666643100 01111111011
Q ss_pred cceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeE
Q 013871 142 CSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASA 221 (434)
Q Consensus 142 ~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v 221 (434)
.....|+....+..|.+. .. +...|+.++..|.....+..........|++.|.+..|++.--...+.|
T Consensus 471 ~~P~GLAvD~~~~~LY~t-D~----------~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I 539 (791)
T 3m0c_C 471 QAPDGLAVDWIHSNIYWT-DS----------VLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKI 539 (791)
T ss_dssp SCCCEEEEETTTTEEEEE-ET----------TTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEE
T ss_pred CCcceeeeeecCCcEEEE-ec----------CCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeE
Confidence 122345555556555442 11 1224666676665433332222345789999998777776433334689
Q ss_pred EEEecccceeEEeC---CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC----CCceEEEECCCCCEE
Q 013871 222 TIFNKKCRPILELG---SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA----ECSVTSEWSPDGRYF 294 (434)
Q Consensus 222 ~l~d~~~~~~~~~~---~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~----~~~~~~~wspdg~~l 294 (434)
...++.+.....+. -..-+.|++.|.+..|.++..++ ..|+..|++.......... .....|+. ++.+|
T Consensus 540 ~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~--~~I~~~d~dG~~~~~v~~~~~~l~~P~glav--~~~~l 615 (791)
T 3m0c_C 540 KKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKL--HSISSIDVNGGNRKTILEDEKRLAHPFSLAV--FEDKV 615 (791)
T ss_dssp EEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTT--TEEEEEETTSCSCEEEEECTTTTSSEEEEEE--ETTEE
T ss_pred EEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCC--CcEEEEecCCCceEEEecCCCccCCCCEEEE--eCCEE
Confidence 99999876655552 24567899999998888887554 6899999875432222222 13334554 45577
Q ss_pred EEEEcCCceeeCCcEEEEe-ecCce
Q 013871 295 MTATTAPRLQIDNGIKIFH-HNGSL 318 (434)
Q Consensus 295 ~tas~~prl~~D~~i~iw~-~~g~~ 318 (434)
+.+... .+.|...+ ++|+.
T Consensus 616 YwtD~~-----~~~I~~~dk~tG~~ 635 (791)
T 3m0c_C 616 FWTDII-----NEAIFSANRLTGSD 635 (791)
T ss_dssp EEEETT-----TTEEEEEETTTCCC
T ss_pred EEEECC-----CCEEEEEeCCCCcc
Confidence 766652 45666665 45643
No 267
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.39 E-value=0.032 Score=57.45 Aligned_cols=283 Identities=11% Similarity=0.029 Sum_probs=131.6
Q ss_pred eEEecC-CCcEEEEEecCCCC----C--CCcEEEEEcCCCcE--EEEEeecCcCCCCC-CeeeecCCCcEEEEec--CCe
Q 013871 4 LLTCLR-VGLIIQTFQKSSTP----Q--EKNVILWKTETGEA--VYQLFQKNMTKTTW-PSIRFSSDEAVACRMA--TNE 71 (434)
Q Consensus 4 ~l~fSP-~g~~L~t~~~~~~~----~--d~~v~iWd~~~g~~--~~~~~~~~~~~~~~-~~~~~S~d~~~la~~~--~~~ 71 (434)
++++.| +|+.++..+..... . ...+.+||..+++. +....... ..+ ...++..|+++++.++ ++.
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~---~~~~~~~~~~~~g~lyv~GG~~~~~ 266 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKH---DMFCPGISMDGNGQIVVTGGNDAKK 266 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSC---CCSSCEEEECTTSCEEEECSSSTTC
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCC---CCccccccCCCCCCEEEeCCCCCCc
Confidence 567788 78877776632110 1 12688999988763 22222211 222 1367789999999885 358
Q ss_pred EEEEeCCCCCCceeeeeecCCe-eEEEEeCCCCCeEEEEe-cCCCCCCceEEEEEcCCCCCCCceee-----eeecccce
Q 013871 72 IQFFDTTDFPKGILYRLRVPGV-AAFEVSKAPGSHVAVFV-PESKGSPASVQIYACGKDLQSQPLAR-----RSFFRCST 144 (434)
Q Consensus 72 i~v~~~~~~~~~~~~~~~~~~v-~~~~~sp~~~~~ia~~~-~~~~~~~~~v~i~~~~~~~~~~~i~~-----~~~~~~~~ 144 (434)
+.+||.....-.....+..... ......++ +.++++-- .+.......+.+|+..+ ..-... ........
T Consensus 267 v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~d-g~iyv~GG~~~~~~~~~~~e~yd~~t---~~W~~~~~~~~~p~~~~~~ 342 (656)
T 1k3i_A 267 TSLYDSSSDSWIPGPDMQVARGYQSSATMSD-GRVFTIGGSWSGGVFEKNGEVYSPSS---KTWTSLPNAKVNPMLTADK 342 (656)
T ss_dssp EEEEEGGGTEEEECCCCSSCCSSCEEEECTT-SCEEEECCCCCSSSCCCCEEEEETTT---TEEEEETTSCSGGGCCCCT
T ss_pred eEEecCcCCceeECCCCCccccccceEEecC-CeEEEEeCcccCCcccccceEeCCCC---CcceeCCCccccccccccc
Confidence 9999976532111111121211 12334444 33222210 01111235688888765 111000 00000000
Q ss_pred eEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecC----------CCCCeEEEEECcCCCEEEEEE
Q 013871 145 VQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR----------KEGPVHDVQWSYSGSEFAVVY 214 (434)
Q Consensus 145 ~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~----------~~~~i~~v~wspdg~~~av~~ 214 (434)
...+..++. +.++... +...........++.++.....-. .+.. ....-..+.+...+..+.++
T Consensus 343 -~~~~~~~~~-iyv~Gg~--~g~~~~~~~~~~v~~yd~~~~~w~-~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~- 416 (656)
T 1k3i_A 343 -QGLYRSDNH-AWLFGWK--KGSVFQAGPSTAMNWYYTSGSGDV-KSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTF- 416 (656)
T ss_dssp -TGGGTTTCS-CCEEECG--GGCEEECCSSSEEEEEECSTTCEE-EEEEECEETTEECCCCBTCEEEEEETTTTEEEEE-
T ss_pred -cceeecCCc-eEEEECC--CCcEEEecCccceeeeecCCccee-ecCCccccccccCCCCCCCceEeccCCCCeEEEE-
Confidence 001112222 2222111 110000001122333333222100 0100 01122445554434555554
Q ss_pred ccCC--------C---eEEEEecccceeEEe-----CCcC-eeEEEECCCCCeEEEEecCC--------CCCeEEEEEcc
Q 013871 215 GFMP--------A---SATIFNKKCRPILEL-----GSGP-YNTVRWNPKGKFLCLAGFGN--------LPGDMAFWDYV 269 (434)
Q Consensus 215 g~~~--------~---~v~l~d~~~~~~~~~-----~~~~-~~~i~~SP~g~~l~~~~~~~--------~~g~i~iwd~~ 269 (434)
|..+ . .+.+||.....-... +... ..++...|+|+++++||.+. ...++++||..
T Consensus 417 GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~ 496 (656)
T 1k3i_A 417 GGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPE 496 (656)
T ss_dssp CCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGG
T ss_pred eCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCC
Confidence 4422 1 577888765443332 2222 23557789999999998542 12579999998
Q ss_pred CCEEEEE--eeCC--CceEEEECCCCCEEEEEEc
Q 013871 270 DGKQLGT--TRAE--CSVTSEWSPDGRYFMTATT 299 (434)
Q Consensus 270 ~~~~i~~--~~~~--~~~~~~wspdg~~l~tas~ 299 (434)
+.+-... ...+ ........|||+.++.|+.
T Consensus 497 t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 497 QDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp GTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred CCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 7753322 2222 2233567899999999885
No 268
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.38 E-value=0.089 Score=48.78 Aligned_cols=231 Identities=8% Similarity=-0.047 Sum_probs=124.9
Q ss_pred EEEEecCCeEEEEeCCCCCCceeeee-ecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecc
Q 013871 63 VACRMATNEIQFFDTTDFPKGILYRL-RVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFR 141 (434)
Q Consensus 63 ~la~~~~~~i~v~~~~~~~~~~~~~~-~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~ 141 (434)
+|+.+..+.|+.+++..........+ .......+.|.+.. ..| +|+.-. ...|..+++........+....+
T Consensus 6 ~ll~~~~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~-~~l-yw~D~~---~~~I~r~~~~g~~~~~~~~~~~l-- 78 (318)
T 3sov_A 6 LLLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSH-GLI-YWSDVS---EEAIKRTEFNKTESVQNVVVSGL-- 78 (318)
T ss_dssp EEEEECEEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGG-TEE-EEEETT---TTEEEEEETTSSSCCCEEEEECC--
T ss_pred EEEEEccCeEEEEECCCCceEEEEEecCCCccEEEEEEeCC-CEE-EEEECC---CCcEEEEEccCCCceEEEEcCCC--
Confidence 45556667899999876431111111 23346678888853 222 343321 24666666654110011111111
Q ss_pred cceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeE
Q 013871 142 CSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASA 221 (434)
Q Consensus 142 ~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v 221 (434)
.....+.+.+.+..|.+. .. +...|..++..+.....+..........+++.|.+..+.+......+.|
T Consensus 79 ~~p~glavd~~~g~ly~~-d~----------~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I 147 (318)
T 3sov_A 79 LSPDGLACDWLGEKLYWT-DS----------ETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKI 147 (318)
T ss_dssp SCCCEEEEETTTTEEEEE-ET----------TTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEE
T ss_pred CCccEEEEEcCCCeEEEE-EC----------CCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEE
Confidence 122345555555554432 11 1123566666664322222122345689999998777766432235689
Q ss_pred EEEecccceeEEe---CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC--EEEEEeeCCCceEEEECCCCCEEEE
Q 013871 222 TIFNKKCRPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG--KQLGTTRAECSVTSEWSPDGRYFMT 296 (434)
Q Consensus 222 ~l~d~~~~~~~~~---~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~--~~i~~~~~~~~~~~~wspdg~~l~t 296 (434)
..+++.+.....+ .-..-+.|+|+|++..|..+..++ +.|+.+|.+.. +.+.......+..++.. +..++.
T Consensus 148 ~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~--~~I~~~d~dG~~~~~~~~~~~~~P~glav~--~~~lyw 223 (318)
T 3sov_A 148 ERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKL--NFIHKSNLDGTNRQAVVKGSLPHPFALTLF--EDILYW 223 (318)
T ss_dssp EEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTT--TEEEEEETTSCSCEEEECSCCSCEEEEEEE--TTEEEE
T ss_pred EEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCC--CEEEEEcCCCCceEEEecCCCCCceEEEEe--CCEEEE
Confidence 9999876554443 223458899999999888887554 79999998743 33322112244445553 345555
Q ss_pred EEcCCceeeCCcEEEEee-cCceee
Q 013871 297 ATTAPRLQIDNGIKIFHH-NGSLFF 320 (434)
Q Consensus 297 as~~prl~~D~~i~iw~~-~g~~~~ 320 (434)
+... .+.|..++. +|+...
T Consensus 224 td~~-----~~~V~~~~~~~G~~~~ 243 (318)
T 3sov_A 224 TDWS-----THSILACNKYTGEGLR 243 (318)
T ss_dssp EETT-----TTEEEEEETTTCCSCE
T ss_pred EecC-----CCeEEEEECCCCCceE
Confidence 4442 667777776 576543
No 269
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=97.37 E-value=0.15 Score=51.34 Aligned_cols=79 Identities=16% Similarity=0.125 Sum_probs=48.5
Q ss_pred CCeEEEEecc-cceeEEeC-CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCC-c--eEEEECCCCC
Q 013871 218 PASATIFNKK-CRPILELG-SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAEC-S--VTSEWSPDGR 292 (434)
Q Consensus 218 ~~~v~l~d~~-~~~~~~~~-~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~-~--~~~~wspdg~ 292 (434)
.+.+..+|.+ ++.+-++. ..+.........|..+++++ .+|.|+.+|.++++.+..+.... + .-+.+..||+
T Consensus 443 ~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg~v~~g~---~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~ 519 (571)
T 2ad6_A 443 MGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYAT---LDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGK 519 (571)
T ss_dssp CEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEEC---TTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred CCeEEEEECCCCCEEEEecCCCCccceeEEECCCEEEEEc---CCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCE
Confidence 3578888886 44444442 22222222233456666665 56899999999999998887542 1 2255667777
Q ss_pred EEEEEEc
Q 013871 293 YFMTATT 299 (434)
Q Consensus 293 ~l~tas~ 299 (434)
.++....
T Consensus 520 ~yv~~~~ 526 (571)
T 2ad6_A 520 QYIGSMY 526 (571)
T ss_dssp EEEEEEE
T ss_pred EEEEEEC
Confidence 5555443
No 270
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.33 E-value=0.08 Score=51.42 Aligned_cols=202 Identities=7% Similarity=0.129 Sum_probs=107.0
Q ss_pred CeeEEEEeCC-CCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCce
Q 013871 92 GVAAFEVSKA-PGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQS 170 (434)
Q Consensus 92 ~v~~~~~sp~-~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~ 170 (434)
....++|+|+ .+..| |+.+.. ..|+.++... +. +............+.++++|. |++ +.... ...
T Consensus 140 ~P~gvavd~~s~~g~L--yv~D~~---~~I~~id~~~---g~-v~~~~~~~~~P~giavd~dG~-lyV-ad~~~-~~~-- 205 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDL--YWVGQR---DAFRHVDFVN---QY-VDIKTTNIGQCADVNFTLNGD-MVV-VDDQS-SDT-- 205 (433)
T ss_dssp CCCEEEECTTTTTCEE--EEECBT---SCEEEEETTT---TE-EEEECCCCSCEEEEEECTTCC-EEE-EECCS-CTT--
T ss_pred CCceEEEccccCCCEE--EEEeCC---CCEEEEECCC---CE-EEEeecCCCCccEEEECCCCC-EEE-EcCCC-Ccc--
Confidence 4567888884 22222 222221 6777777754 22 222222223456889999999 544 32211 000
Q ss_pred eecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccccee-EE---eCC-cCeeEEEEC
Q 013871 171 YYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPI-LE---LGS-GPYNTVRWN 245 (434)
Q Consensus 171 ~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~-~~---~~~-~~~~~i~~S 245 (434)
...++.+...+.......+........++++|++..+.+ +....+.|..+|.....+ .. ... .....|+|+
T Consensus 206 ---~~gv~~~~~~~~~~~~~~~~~~~~P~giavd~~~G~lyv-~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~d 281 (433)
T 4hw6_A 206 ---NTGIYLFTRASGFTERLSLCNARGAKTCAVHPQNGKIYY-TRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWH 281 (433)
T ss_dssp ---SEEEEEECGGGTTCCEEEEEECSSBCCCEECTTTCCEEE-CBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEEC
T ss_pred ---cceEEEEECCCCeeccccccccCCCCEEEEeCCCCeEEE-EECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEe
Confidence 112333332222211111111234567899994334443 344566899999873322 22 222 223469999
Q ss_pred CCCCeEEEEecCCCCCeEEEEEcc--CCE-----EEEEe-e-------------CCCceEEEE---------CCCCCEEE
Q 013871 246 PKGKFLCLAGFGNLPGDMAFWDYV--DGK-----QLGTT-R-------------AECSVTSEW---------SPDGRYFM 295 (434)
Q Consensus 246 P~g~~l~~~~~~~~~g~i~iwd~~--~~~-----~i~~~-~-------------~~~~~~~~w---------spdg~~l~ 295 (434)
|+|++|.++..++ +.|..+|.+ +++ .+... . -..+..+++ .++|..++
T Consensus 282 pdG~~LYvad~~~--~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyv 359 (433)
T 4hw6_A 282 PTGDWAYIIYNGK--HCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYF 359 (433)
T ss_dssp TTSSEEEEEETTT--TEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEE
T ss_pred CCCCEEEEEeCCC--CEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEE
Confidence 9999888777544 689998865 332 12111 0 012445888 67776655
Q ss_pred EEEcCCceeeCCcEEEEeecCcee
Q 013871 296 TATTAPRLQIDNGIKIFHHNGSLF 319 (434)
Q Consensus 296 tas~~prl~~D~~i~iw~~~g~~~ 319 (434)
+-+. .+.|+.++.+|.+.
T Consensus 360 aD~~------n~~I~~~~~~G~v~ 377 (433)
T 4hw6_A 360 CDRD------SHTVRVLTPEGRVT 377 (433)
T ss_dssp EETT------TTEEEEECTTSEEE
T ss_pred EECC------CCEEEEECCCCCEE
Confidence 5444 67788888777543
No 271
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=97.29 E-value=0.17 Score=52.12 Aligned_cols=57 Identities=16% Similarity=0.248 Sum_probs=43.0
Q ss_pred CeEEEEEccCCEEEEEeeCCCc-eEEEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceeeeee
Q 013871 261 GDMAFWDYVDGKQLGTTRAECS-VTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKKM 323 (434)
Q Consensus 261 g~i~iwd~~~~~~i~~~~~~~~-~~~~wspdg~~l~tas~~prl~~D~~i~iw~~-~g~~~~~~~ 323 (434)
|.|.-||..+++.+........ ........|..+++++. |+.+++||. +|+++.+..
T Consensus 438 g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~g~~------dg~l~a~d~~tG~~l~~~~ 496 (668)
T 1kv9_A 438 GALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTA------AGQMHAYSADKGEALWQFE 496 (668)
T ss_dssp EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECT------TSEEEEEETTTCCEEEEEE
T ss_pred ceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEEECC------cccchhhhhhcChhheEec
Confidence 7899999999998877765422 22355567888888877 999999997 577776553
No 272
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.29 E-value=0.061 Score=48.10 Aligned_cols=176 Identities=8% Similarity=0.092 Sum_probs=109.6
Q ss_pred ceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEE
Q 013871 143 STVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASAT 222 (434)
Q Consensus 143 ~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~ 222 (434)
+...+.|+|++..|.++... ...|+.++..+.....+++........+++.+++. |+++ ...++.+.
T Consensus 28 ~lSGla~~~~~~~L~aV~d~-----------~~~I~~ld~~g~v~~~i~l~g~~D~EGIa~~~~g~-~~vs-~E~~~~l~ 94 (255)
T 3qqz_A 28 NISSLTWSAQSNTLFSTINK-----------PAAIVEMTTNGDLIRTIPLDFVKDLETIEYIGDNQ-FVIS-DERDYAIY 94 (255)
T ss_dssp CEEEEEEETTTTEEEEEEET-----------TEEEEEEETTCCEEEEEECSSCSSEEEEEECSTTE-EEEE-ETTTTEEE
T ss_pred CcceeEEeCCCCEEEEEECC-----------CCeEEEEeCCCCEEEEEecCCCCChHHeEEeCCCE-EEEE-ECCCCcEE
Confidence 45678999998877665322 22478888877666677776556788999998875 5443 44567899
Q ss_pred EEecccce----eE--Ee------CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEc--cC--CEEEEE------eeCC
Q 013871 223 IFNKKCRP----IL--EL------GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDY--VD--GKQLGT------TRAE 280 (434)
Q Consensus 223 l~d~~~~~----~~--~~------~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~--~~--~~~i~~------~~~~ 280 (434)
+|++.... +. .+ .......|+|+|.++.|.++.-.. ...|+.|+- .+ ...+.. ....
T Consensus 95 ~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~-p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~ 173 (255)
T 3qqz_A 95 VISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKN-PIEVYKVNGLLSSNELHISKDKALQRQFTLD 173 (255)
T ss_dssp EEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESS-SEEEEEEESTTCSSCCEEEECHHHHHTCCSS
T ss_pred EEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcC-CceEEEEcccccCCceeeecchhhccccccC
Confidence 98764211 11 11 123346899999997666665221 224555551 11 122111 0112
Q ss_pred CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceeeeeecc-----------cceeeEEEcCCC
Q 013871 281 CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKKMFD-----------KLFQAEWKPVSP 337 (434)
Q Consensus 281 ~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~~~~~~~~-----------~~~~~~w~p~~~ 337 (434)
....+++.|...+|++.+.. .+.+.++|.+|+.+...... .--.+++.|++.
T Consensus 174 d~S~l~~dp~tg~lliLS~~-----s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~ 236 (255)
T 3qqz_A 174 DVSGAEFNQQKNTLLVLSHE-----SRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN 236 (255)
T ss_dssp CCCEEEEETTTTEEEEEETT-----TTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCC
T ss_pred CceeEEEcCCCCeEEEEECC-----CCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCCC
Confidence 55679999987777777764 67888899999866554332 345677777664
No 273
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.27 E-value=0.19 Score=52.77 Aligned_cols=221 Identities=5% Similarity=-0.105 Sum_probs=115.6
Q ss_pred CcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe--cCCeEEEEeCCCCC----CceeeeeecCCeeEEEEe
Q 013871 26 KNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM--ATNEIQFFDTTDFP----KGILYRLRVPGVAAFEVS 99 (434)
Q Consensus 26 ~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~--~~~~i~v~~~~~~~----~~~~~~~~~~~v~~~~~s 99 (434)
..|+..++..++........ .....++|.+.+..|... ..+.|+.+++.... ........+.....+++.
T Consensus 404 ~~Ir~i~l~~~~~~~l~~~~----~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD 479 (791)
T 3m0c_C 404 HEVRKMTLDRSEYTSLIPNL----RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVD 479 (791)
T ss_dssp SSEEEECTTSCCCEEEECSC----SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEE
T ss_pred cceeEeeccCCcceeeecCC----CceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeee
Confidence 45676676654432222211 223378898865554444 34688888876521 111111123456677887
Q ss_pred CCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecc-eeEE
Q 013871 100 KAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGE-SKLN 178 (434)
Q Consensus 100 p~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~-~~l~ 178 (434)
+.++ .| +|... ..+.|.+.++.. ..........-.....|+..|.+..|.+. .. |. ..|+
T Consensus 480 ~~~~-~L-Y~tD~---~~~~I~v~~ldG---~~~~~l~~~~l~~P~gIaVDp~~g~LYwt-D~----------g~~~~I~ 540 (791)
T 3m0c_C 480 WIHS-NI-YWTDS---VLGTVSVADTKG---VKRKTLFRENGSKPRAIVVDPVHGFMYWT-DW----------GTPAKIK 540 (791)
T ss_dssp TTTT-EE-EEEET---TTTEEEEEETTS---SSEEEEEECTTCCEEEEEEETTTTEEEEE-EC----------SSSCEEE
T ss_pred ecCC-cE-EEEec---CCCeEEEEeCCC---CeEEEEEeCCCCCcceEEEecCCCCEEEe-cC----------CCCCeEE
Confidence 7633 22 33322 235777777754 22111111111234467777766665442 11 11 2467
Q ss_pred EEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeEEeC---Cc--CeeEEEECCCCCeEEE
Q 013871 179 YLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELG---SG--PYNTVRWNPKGKFLCL 253 (434)
Q Consensus 179 ~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~~~---~~--~~~~i~~SP~g~~l~~ 253 (434)
.+++.|.....+....-.....|++.+.+..|+++ ......|..+|+.+.....+. .. .-..|++ ++.+|++
T Consensus 541 ~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwa-D~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav--~~~~lYw 617 (791)
T 3m0c_C 541 KGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWV-DSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV--FEDKVFW 617 (791)
T ss_dssp EEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEE-ETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEE--ETTEEEE
T ss_pred EEecCCCceEEEEeCCCCCceEEEEecCCCeEEEE-eCCCCcEEEEecCCCceEEEecCCCccCCCCEEEE--eCCEEEE
Confidence 77777754333322223456889999888888775 445669999999766544441 11 1223443 4556666
Q ss_pred EecCCCCCeEEEEEccCCEEE
Q 013871 254 AGFGNLPGDMAFWDYVDGKQL 274 (434)
Q Consensus 254 ~~~~~~~g~i~iwd~~~~~~i 274 (434)
+...+ +.|...|..+++.+
T Consensus 618 tD~~~--~~I~~~dk~tG~~~ 636 (791)
T 3m0c_C 618 TDIIN--EAIFSANRLTGSDV 636 (791)
T ss_dssp EETTT--TEEEEEETTTCCCC
T ss_pred EECCC--CEEEEEeCCCCcce
Confidence 66544 67777776666433
No 274
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.25 E-value=0.12 Score=47.73 Aligned_cols=232 Identities=9% Similarity=-0.082 Sum_probs=124.6
Q ss_pred EEEEecCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceee-eeecc
Q 013871 63 VACRMATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLAR-RSFFR 141 (434)
Q Consensus 63 ~la~~~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~-~~~~~ 141 (434)
+|+.+..++|+..++....... .--.......+.|++.++ .+ +|... ..+.|..+++.....+..... ....-
T Consensus 3 ~ll~~~~~~I~~i~~~~~~~~~-~~~~~~~p~g~~~d~~~~-~l-y~~D~---~~~~I~~~~~~g~~~~~~~~~~~~~~~ 76 (316)
T 1ijq_A 3 YLFFTNRHEVRKMTLDRSEYTS-LIPNLRNVVALDTEVASN-RI-YWSDL---SQRMICSTQLDRAHGVSSYDTVISRDI 76 (316)
T ss_dssp EEEEECBSSEEEEETTSCCCEE-EECSCSSEEEEEEETTTT-EE-EEEET---TTTEEEEEEC--------CEEEECSSC
T ss_pred EEEEECCCeEEEEECCCcceEe-hhcCCCceEEEEEEeCCC-EE-EEEEC---CCCcEEEEECCCCCCCcccEEEEeCCC
Confidence 5666667789999987643211 111245678889988633 32 33322 234666666643100011111 11000
Q ss_pred cceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeE
Q 013871 142 CSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASA 221 (434)
Q Consensus 142 ~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v 221 (434)
.....+.+.+.+..|.+. .. +...|..++..+.....+.-.......+++..|.+..+.+......+.|
T Consensus 77 ~~p~glavd~~~~~ly~~-d~----------~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I 145 (316)
T 1ijq_A 77 QAPDGLAVDWIHSNIYWT-DS----------VLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKI 145 (316)
T ss_dssp SCCCEEEEETTTTEEEEE-ET----------TTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEE
T ss_pred CCcCEEEEeecCCeEEEE-EC----------CCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeE
Confidence 122345555555555432 11 1123555665554322221112345689999997777766432223689
Q ss_pred EEEecccceeEEe---CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC--EEEEEee--CCCceEEEECCCCCEE
Q 013871 222 TIFNKKCRPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG--KQLGTTR--AECSVTSEWSPDGRYF 294 (434)
Q Consensus 222 ~l~d~~~~~~~~~---~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~--~~i~~~~--~~~~~~~~wspdg~~l 294 (434)
..+++.+.....+ .-..-+.|+|+|++..|.++...+ +.|+.+|.+.. +.+.... ......+++. +..|
T Consensus 146 ~~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~--~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~--~~~l 221 (316)
T 1ijq_A 146 KKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKL--HSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKV 221 (316)
T ss_dssp EEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTT--TEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEE
T ss_pred EEEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEEECCC--CeEEEEecCCCceEEEeecCCccCCcEEEEEE--CCEE
Confidence 9999876654444 234467899999999888887544 79999998743 3333221 1234456663 3455
Q ss_pred EEEEcCCceeeCCcEEEEee-cCceee
Q 013871 295 MTATTAPRLQIDNGIKIFHH-NGSLFF 320 (434)
Q Consensus 295 ~tas~~prl~~D~~i~iw~~-~g~~~~ 320 (434)
+.+... .+.|..++. +|+.+.
T Consensus 222 y~~d~~-----~~~V~~~~~~~g~~~~ 243 (316)
T 1ijq_A 222 FWTDII-----NEAIFSANRLTGSDVN 243 (316)
T ss_dssp EEEETT-----TTEEEEEETTTCCCCE
T ss_pred EEEECC-----CCeEEEEeCCCCcceE
Confidence 554442 667777774 676443
No 275
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=97.20 E-value=0.13 Score=47.10 Aligned_cols=215 Identities=7% Similarity=-0.026 Sum_probs=113.9
Q ss_pred CeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCcee
Q 013871 92 GVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSY 171 (434)
Q Consensus 92 ~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~ 171 (434)
....++|+|++ ..+ +.. ...+.|..++... ....... .......+.+.++|+ |++ +....+.
T Consensus 33 ~pegia~~~~g-~ly--v~d---~~~~~I~~~d~~g----~~~~~~~-~~~~p~gia~~~dG~-l~v-ad~~~~~----- 94 (306)
T 2p4o_A 33 FLENLASAPDG-TIF--VTN---HEVGEIVSITPDG----NQQIHAT-VEGKVSGLAFTSNGD-LVA-TGWNADS----- 94 (306)
T ss_dssp CEEEEEECTTS-CEE--EEE---TTTTEEEEECTTC----CEEEEEE-CSSEEEEEEECTTSC-EEE-EEECTTS-----
T ss_pred CcceEEECCCC-CEE--EEe---CCCCeEEEECCCC----ceEEEEe-CCCCceeEEEcCCCc-EEE-EeccCCc-----
Confidence 35678888864 322 111 1124555555432 2222111 223456788999998 333 3221110
Q ss_pred ecceeEEEEeeCCc-ceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccc--eeEEe-----------CCc
Q 013871 172 YGESKLNYLTTDGT-HEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR--PILEL-----------GSG 237 (434)
Q Consensus 172 ~g~~~l~~l~~~~~-~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~--~~~~~-----------~~~ 237 (434)
..++.++.... ......+........++..+++ .+.+ +....+.|+++|.... .+... .-.
T Consensus 95 ---~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~-~~~v-~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~ 169 (306)
T 2p4o_A 95 ---IPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDT-QYLT-ADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFP 169 (306)
T ss_dssp ---CEEEEEECTTSCEEEEEECTTCSCEEEEEESSSS-EEEE-EETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSC
T ss_pred ---ceEEEEcCCCCeEEEEEeCCCccccCcccccCCC-cEEE-EECCCCeEEEEeCCCCcEeEEEECCccccccccCCCC
Confidence 11344432222 1112222222233455555544 3333 3444678999997642 22210 011
Q ss_pred CeeEEEECCCCCeEEEEecCCCCCeEEEEEccC-C-----EEEEEeeCCCceEEEECCCCCEEEEEEcCCceeeCCcEEE
Q 013871 238 PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD-G-----KQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKI 311 (434)
Q Consensus 238 ~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~-~-----~~i~~~~~~~~~~~~wspdg~~l~tas~~prl~~D~~i~i 311 (434)
..+.| +|+|++|.++...+ +.|..+|++. + +.+..+ .....++++++|+.+++... .+.|.+
T Consensus 170 ~pngi--s~dg~~lyv~d~~~--~~I~~~~~~~~g~~~~~~~~~~~--~~P~gi~vd~dG~l~va~~~------~~~V~~ 237 (306)
T 2p4o_A 170 AANGL--KRFGNFLYVSNTEK--MLLLRIPVDSTDKPGEPEIFVEQ--TNIDDFAFDVEGNLYGATHI------YNSVVR 237 (306)
T ss_dssp SEEEE--EEETTEEEEEETTT--TEEEEEEBCTTSCBCCCEEEEES--CCCSSEEEBTTCCEEEECBT------TCCEEE
T ss_pred cCCCc--CcCCCEEEEEeCCC--CEEEEEEeCCCCCCCccEEEecc--CCCCCeEECCCCCEEEEeCC------CCeEEE
Confidence 23556 89999888887544 7999999874 3 222222 23445899999987665555 788999
Q ss_pred EeecCceee--eee--cccceeeEEE---cCCCCCCC
Q 013871 312 FHHNGSLFF--KKM--FDKLFQAEWK---PVSPDKFG 341 (434)
Q Consensus 312 w~~~g~~~~--~~~--~~~~~~~~w~---p~~~~~~~ 341 (434)
++.+|++.. ... ......+++. |+...||-
T Consensus 238 ~~~~G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyV 274 (306)
T 2p4o_A 238 IAPDRSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYV 274 (306)
T ss_dssp ECTTCCEEEEECGGGTCTTEEEEEECCSTTTTTEEEE
T ss_pred ECCCCCEEEEeecccccCCceEEEEecccCCCCEEEE
Confidence 999887633 222 2346677777 66555554
No 276
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.16 E-value=0.17 Score=47.65 Aligned_cols=240 Identities=13% Similarity=0.141 Sum_probs=112.0
Q ss_pred CCCCeeeecCCCcEEEEecCCeEEEEeCCCCCCceeeeee-----cCCeeEEEEeCC---CCCeEEEEecCCCCCCceEE
Q 013871 50 TTWPSIRFSSDEAVACRMATNEIQFFDTTDFPKGILYRLR-----VPGVAAFEVSKA---PGSHVAVFVPESKGSPASVQ 121 (434)
Q Consensus 50 ~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~~~~~~~~-----~~~v~~~~~sp~---~~~~ia~~~~~~~~~~~~v~ 121 (434)
..| .++|.|||+++++-..+.|.+++ .. .......+. ..+...++++|+ ++....++.....+....|.
T Consensus 32 ~P~-~ia~~pdG~l~V~e~~g~I~~i~-~g-~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~ 108 (352)
T 2ism_A 32 VPW-ALAFLPDGGMLIAERPGRIRLFR-EG-RLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV 108 (352)
T ss_dssp CEE-EEEECTTSCEEEEETTTEEEEEE-TT-EEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred Cce-EEEEcCCCeEEEEeCCCeEEEEE-CC-CccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence 345 89999999988887778999998 22 111111111 246788999997 33333333322111124555
Q ss_pred EEEcCCCCC--CCceee-ee---ecccceeEEEECCCCCeEEEEEEecccccCce---eecceeEEEEeeCCcc------
Q 013871 122 IYACGKDLQ--SQPLAR-RS---FFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQS---YYGESKLNYLTTDGTH------ 186 (434)
Q Consensus 122 i~~~~~~~~--~~~i~~-~~---~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~---~~g~~~l~~l~~~~~~------ 186 (434)
.+++..... .+.+.. .. .....-..+.|.|+|. |.+ +..+....... -.....++.++..+..
T Consensus 109 r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~-Lyv-~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf 186 (352)
T 2ism_A 109 RLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGM-LYV-TTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPF 186 (352)
T ss_dssp EEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSC-EEE-ECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTT
T ss_pred EEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCC-EEE-EECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcc
Confidence 666543100 011111 11 0011235789999994 443 32221100000 0011246666655511
Q ss_pred -------eeeeecCCCCCeEEEEECc-CCCEEEEEEccCC------CeEEEEeccc-----------------ceeEEeC
Q 013871 187 -------EGLVPLRKEGPVHDVQWSY-SGSEFAVVYGFMP------ASATIFNKKC-----------------RPILELG 235 (434)
Q Consensus 187 -------~~~v~l~~~~~i~~v~wsp-dg~~~av~~g~~~------~~v~l~d~~~-----------------~~~~~~~ 235 (434)
........ .....++|+| +|..++.-.+... ..+.+...-. .++..+.
T Consensus 187 ~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~ 265 (352)
T 2ism_A 187 LGRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWP 265 (352)
T ss_dssp TTCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECT
T ss_pred cCCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEecC
Confidence 01111110 1135689999 5665553222211 1244432111 1222331
Q ss_pred -CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCE----E--EEE-ee-CCCceEEEECCCCCEEEEEEc
Q 013871 236 -SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK----Q--LGT-TR-AECSVTSEWSPDGRYFMTATT 299 (434)
Q Consensus 236 -~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~----~--i~~-~~-~~~~~~~~wspdg~~l~tas~ 299 (434)
......++| .+|.+++ +... .+.|...+++... . ... +. ...+..+++.|||..+++...
T Consensus 266 ~~~ap~G~~~-~~G~l~v-~~~~--~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~~ 334 (352)
T 2ism_A 266 QGFPPGNLAF-FRGDLYV-AGLR--GQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTSN 334 (352)
T ss_dssp TCCCEEEEEE-ETTEEEE-EETT--TTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEECS
T ss_pred CCCCCcceEE-ECCEEEE-EECC--CCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEeC
Confidence 122345666 4565544 4432 2578777765321 0 111 12 235677999999987666543
No 277
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=97.10 E-value=0.031 Score=50.09 Aligned_cols=159 Identities=12% Similarity=0.060 Sum_probs=90.9
Q ss_pred CCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCc-ceeeeecC
Q 013871 115 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGT-HEGLVPLR 193 (434)
Q Consensus 115 ~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~-~~~~v~l~ 193 (434)
+..+.|+.+++.+ ++.+.+. ... .....-..++|..|.+++- .+..++.++.... ....++..
T Consensus 72 G~~g~v~~iD~~T---gkv~~~~-l~~-~~FgeGit~~g~~Ly~ltw-----------~~~~v~V~D~~Tl~~~~ti~~~ 135 (268)
T 3nok_A 72 GHQGTLRQLSLES---AQPVWME-RLG-NIFAEGLASDGERLYQLTW-----------TEGLLFTWSGMPPQRERTTRYS 135 (268)
T ss_dssp TTTTEEEECCSSC---SSCSEEE-ECT-TCCEEEEEECSSCEEEEES-----------SSCEEEEEETTTTEEEEEEECS
T ss_pred CCCCEEEEEECCC---CcEEeEE-CCC-CcceeEEEEeCCEEEEEEc-----------cCCEEEEEECCcCcEEEEEeCC
Confidence 4556689999887 6666655 322 2111112334566555421 1223555554332 12334443
Q ss_pred CCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccc-eeEEe----C---CcCeeEEEECCCCCeEEEEecCCCCCeEEE
Q 013871 194 KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PILEL----G---SGPYNTVRWNPKGKFLCLAGFGNLPGDMAF 265 (434)
Q Consensus 194 ~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~-~~~~~----~---~~~~~~i~~SP~g~~l~~~~~~~~~g~i~i 265 (434)
.++ ...++|++.|++.. ..++|.++|.++. .+..+ . -...|.+.|. +|+..+..-. ...|.+
T Consensus 136 ~eG----wGLt~Dg~~L~vSd--Gs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~---s~~I~v 205 (268)
T 3nok_A 136 GEG----WGLCYWNGKLVRSD--GGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWH---SSDVLE 205 (268)
T ss_dssp SCC----CCEEEETTEEEEEC--SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETT---CSEEEE
T ss_pred Cce----eEEecCCCEEEEEC--CCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECC---CCeEEE
Confidence 222 23336788888743 3679999998653 33333 1 2245788888 7865543332 359999
Q ss_pred EEccCCEEEEEeeCC--------------CceE-EEECCCCCEEEEEEc
Q 013871 266 WDYVDGKQLGTTRAE--------------CSVT-SEWSPDGRYFMTATT 299 (434)
Q Consensus 266 wd~~~~~~i~~~~~~--------------~~~~-~~wspdg~~l~tas~ 299 (434)
.|.++++.+..+... ++.. ++|+|+++.|++++.
T Consensus 206 IDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 206 IDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp ECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred EeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 999999988877642 2333 999998665555443
No 278
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.09 E-value=0.14 Score=45.33 Aligned_cols=177 Identities=10% Similarity=0.068 Sum_probs=98.7
Q ss_pred eeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceee
Q 013871 93 VAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYY 172 (434)
Q Consensus 93 v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~ 172 (434)
...+.|+++ . +|........+.|+.+++.+ ++.+......... ...-....|..|..++-
T Consensus 23 tqGL~~~~~---~--LyestG~~g~S~v~~vD~~t---gkv~~~~~l~~~~-fgeGi~~~~~~ly~ltw----------- 82 (243)
T 3mbr_X 23 TEGLFYLRG---H--LYESTGETGRSSVRKVDLET---GRILQRAEVPPPY-FGAGIVAWRDRLIQLTW----------- 82 (243)
T ss_dssp EEEEEEETT---E--EEEEECCTTSCEEEEEETTT---CCEEEEEECCTTC-CEEEEEEETTEEEEEES-----------
T ss_pred cccEEEECC---E--EEEECCCCCCceEEEEECCC---CCEEEEEeCCCCc-ceeEEEEeCCEEEEEEe-----------
Confidence 456677753 1 22222222246899999987 6666665443211 11111123555555421
Q ss_pred cceeEEEEeeCCc-ceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccc-eeEEeC-------CcCeeEEE
Q 013871 173 GESKLNYLTTDGT-HEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PILELG-------SGPYNTVR 243 (434)
Q Consensus 173 g~~~l~~l~~~~~-~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~-~~~~~~-------~~~~~~i~ 243 (434)
.+..++.++.... ....++...++ ..+ .+|+..+.+. . ..++|.++|.++. .+..+. -...|.+.
T Consensus 83 ~~~~v~v~D~~tl~~~~ti~~~~~G--wgl--t~dg~~L~vS-d-gs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe 156 (243)
T 3mbr_X 83 RNHEGFVYDLATLTPRARFRYPGEG--WAL--TSDDSHLYMS-D-GTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELE 156 (243)
T ss_dssp SSSEEEEEETTTTEEEEEEECSSCC--CEE--EECSSCEEEE-C-SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEE
T ss_pred eCCEEEEEECCcCcEEEEEeCCCCc--eEE--eeCCCEEEEE-C-CCCeEEEEeCCCCeEEEEEEEccCCcccccceeeE
Confidence 1223555554332 12334443322 334 4678877763 3 3679999998643 333331 23567888
Q ss_pred ECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--------------CceE-EEECCCCCEEEEEEc
Q 013871 244 WNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--------------CSVT-SEWSPDGRYFMTATT 299 (434)
Q Consensus 244 ~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--------------~~~~-~~wspdg~~l~tas~ 299 (434)
|. +|+..+-.-.. ..|.+.|.++++.+..+... ++.. ++|+|+++.|.+++.
T Consensus 157 ~~-~G~lyanvw~s---~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 157 WV-NGELLANVWLT---SRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp EE-TTEEEEEETTT---TEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred Ee-CCEEEEEECCC---CeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 87 67755433323 49999999999988877632 2333 999998777666654
No 279
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.03 E-value=0.2 Score=46.20 Aligned_cols=266 Identities=16% Similarity=0.150 Sum_probs=148.7
Q ss_pred CcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCCCceeeeeec
Q 013871 11 GLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPKGILYRLRV 90 (434)
Q Consensus 11 g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~~~~~~~~~ 90 (434)
.+|++.-+.. .++.+|.|-|+.++..+.+..-.. + +.--.|..+.+|.-.+..|+|||++...+.....+ .
T Consensus 36 DkyicVrE~~--~~~~~VvIiDl~n~~~~~Rrpi~A---d---sAIMnP~~~ViALrag~~LQiFnletK~klks~~~-~ 106 (365)
T 2xzh_A 36 DKFICIREKV--GEQAQVVIIDMNDPSNPIRRPISA---D---SAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTM-T 106 (365)
T ss_dssp TTEEEEEEEE--TTEEEEEEEETTSTTSCEEEECCC---S---EEEECSSSSEEEEEETTEEEEEETTTTEEEEEEEC-S
T ss_pred CceEEEEecC--CCCCEEEEEECCCCCCcccccccc---c---eeeeCCCccEEEEecCCeEEEechHHhhhhcceec-C
Confidence 4566665521 233578999998876554433221 1 33457888888877788999999988554333333 3
Q ss_pred CCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeee----ecccceeEEEECCCCCeEEEEEEecccc
Q 013871 91 PGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRS----FFRCSTVQLNWNRGSTGLLAVAQSDVDK 166 (434)
Q Consensus 91 ~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~----~~~~~~~~~~ws~~G~~l~~~~~~~~d~ 166 (434)
+.|..-.|-.. ..+++... ..|.-|++... ..+..... +....+....-+++.++++++.-...+.
T Consensus 107 e~VvfWkWis~--~~L~lVT~------taVyHWs~~~~--s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~ 176 (365)
T 2xzh_A 107 DDVTFWKWISL--NTVALVTD------NAVYHWSMEGE--SQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQN 176 (365)
T ss_dssp SCEEEEEECSS--SEEEEEES------SEEEEEESSTT--CCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETT
T ss_pred CccEEEEecCC--CeEEEEcC------CcEEEEcccCC--CCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCC
Confidence 56777777653 45555443 25677777542 33332222 2245667778899999988775443332
Q ss_pred cCceeecceeEEEEeeCCcceeeeecCCCCCeEEE-EECcCCC-----EEEEEEcc-CCCeEEEEeccc----ce-----
Q 013871 167 TNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDV-QWSYSGS-----EFAVVYGF-MPASATIFNKKC----RP----- 230 (434)
Q Consensus 167 ~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v-~wspdg~-----~~av~~g~-~~~~v~l~d~~~----~~----- 230 (434)
...|...||.. .......+ +|..-++ .+-.+|. .|+++... ..+++.+.++.. .+
T Consensus 177 ---~v~G~mQLYS~--er~~sQ~i----eGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk 247 (365)
T 2xzh_A 177 ---RVVGAMQLYSV--DRKVSQPI----EGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKK 247 (365)
T ss_dssp ---EEEEEEEEEET--TTTEEEEE----CCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCE
T ss_pred ---ccceeEEEEee--ccccccee----eeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccc
Confidence 22365555543 23222211 3333332 2222322 34443322 124888887732 11
Q ss_pred eEEe--C----CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceEEEECCCCCEEEEEE-cCCce
Q 013871 231 ILEL--G----SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTAT-TAPRL 303 (434)
Q Consensus 231 ~~~~--~----~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~~~wspdg~~l~tas-~~prl 303 (434)
..++ . .+.--++..|+.-..+.+-. .-|.|++||++++.++..- ..|+|-- |+++. ..
T Consensus 248 ~vdi~fppea~~DFPVamqvs~kygviyviT---K~G~ihlyDleTgt~i~~n--------rIS~d~i-F~ta~~~~--- 312 (365)
T 2xzh_A 248 AVDVFFPPEAQNDFPVAMQISEKHDVVFLIT---KYGYIHLYDLETGTCIYMN--------RISGETI-FVTAPHEA--- 312 (365)
T ss_dssp EEEECCCTTCTTCCEEEEEEETTTTEEEEEE---TTSEEEEEETTTCCEEEEE--------ECCSSCE-EEEEEEGG---
T ss_pred cceeeCCccccCCceEEEEecccCCEEEEEe---CCcEEEEEEcccCcEEEEe--------ccCCCce-EEecccCC---
Confidence 1121 1 22223567777666666666 5579999999999887654 3455533 33333 21
Q ss_pred eeCCcEEEEeecCceeee
Q 013871 304 QIDNGIKIFHHNGSLFFK 321 (434)
Q Consensus 304 ~~D~~i~iw~~~g~~~~~ 321 (434)
.++|..-+-.|+.+..
T Consensus 313 --~~Gi~~Vnr~GqVl~v 328 (365)
T 2xzh_A 313 --TAGIIGVNRKGQVLSV 328 (365)
T ss_dssp --GTEEEEEETTCEEEEE
T ss_pred --CCcEEEEcCCCEEEEE
Confidence 4667777767776553
No 280
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=96.99 E-value=0.038 Score=54.44 Aligned_cols=155 Identities=12% Similarity=0.109 Sum_probs=91.2
Q ss_pred eeEEEECC-CCCeEEEEEEecccccCceeecceeEEEEeeCCcceeee-ecCC--CCCeEEEEE-------CcCCCEEEE
Q 013871 144 TVQLNWNR-GSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLV-PLRK--EGPVHDVQW-------SYSGSEFAV 212 (434)
Q Consensus 144 ~~~~~ws~-~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v-~l~~--~~~i~~v~w-------spdg~~~av 212 (434)
...|.+.| ++..|.++. . ....|..++..+.....+ .... ......++| +++|+.+.+
T Consensus 141 p~~la~dp~~~~~Lyv~~-~----------~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyv 209 (496)
T 3kya_A 141 NGRLAFDPLNKDHLYICY-D----------GHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIV 209 (496)
T ss_dssp EEEEEEETTEEEEEEEEE-E----------TEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEE
T ss_pred CCEEEEccCCCCEEEEEE-C----------CCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEE
Confidence 34677887 355554432 1 112366666555432222 1111 124789999 999996665
Q ss_pred EEccCC------CeEEEEeccc--cee-----EEe-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEcc-------CC
Q 013871 213 VYGFMP------ASATIFNKKC--RPI-----LEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV-------DG 271 (434)
Q Consensus 213 ~~g~~~------~~v~l~d~~~--~~~-----~~~-~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~-------~~ 271 (434)
. .... ..+.+++... ... ..+ .-...+.++.+|++.+|.++..++ +.|+.+|.+ ++
T Consensus 210 a-d~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~--g~V~r~d~~~~~~~~~tg 286 (496)
T 3kya_A 210 A-IDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEK--GQVFRLDLVDYFKTIKNG 286 (496)
T ss_dssp E-ECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTT--TEEEEECHHHHHHHHHTT
T ss_pred E-eCCCCCcccCceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCC--CEEEEEecccccccccCc
Confidence 3 3322 2466675332 110 111 112346789999877777777654 789999987 45
Q ss_pred EE--------------EEEee-CCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc
Q 013871 272 KQ--------------LGTTR-AECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS 317 (434)
Q Consensus 272 ~~--------------i~~~~-~~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~ 317 (434)
+. +.... ......++|+|+|++|+.+... .+.|+.+++++.
T Consensus 287 ~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~-----~h~I~kid~dg~ 342 (496)
T 3kya_A 287 GSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVIN-----NHYFMRSDYDEI 342 (496)
T ss_dssp CCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETT-----TTEEEEEEEETT
T ss_pred eeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCC-----CCEEEEEecCCC
Confidence 42 22222 2345679999999987777653 677888887663
No 281
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=96.98 E-value=0.0088 Score=53.64 Aligned_cols=128 Identities=9% Similarity=-0.065 Sum_probs=83.8
Q ss_pred CcCCCEEEEEEccCCCeEEEEeccc-ceeEEeCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--
Q 013871 204 SYSGSEFAVVYGFMPASATIFNKKC-RPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-- 280 (434)
Q Consensus 204 spdg~~~av~~g~~~~~v~l~d~~~-~~~~~~~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-- 280 (434)
.++++.+.++ ...++.+.+||.+. +.+.++.... .....++||+.|+++.. .+.|.++|.++.+.+..+.-.
T Consensus 102 t~~g~~Ly~l-tw~~~~v~V~D~~Tl~~~~ti~~~~-eGwGLt~Dg~~L~vSdG---s~~l~~iDp~T~~v~~~I~V~~~ 176 (268)
T 3nok_A 102 ASDGERLYQL-TWTEGLLFTWSGMPPQRERTTRYSG-EGWGLCYWNGKLVRSDG---GTMLTFHEPDGFALVGAVQVKLR 176 (268)
T ss_dssp EECSSCEEEE-ESSSCEEEEEETTTTEEEEEEECSS-CCCCEEEETTEEEEECS---SSEEEEECTTTCCEEEEEECEET
T ss_pred EEeCCEEEEE-EccCCEEEEEECCcCcEEEEEeCCC-ceeEEecCCCEEEEECC---CCEEEEEcCCCCeEEEEEEeCCC
Confidence 3456677665 45678999999864 5555553211 12233467888877762 369999999999877766431
Q ss_pred -----CceEEEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceeeeeec---------------ccceeeEEEcCCCCC
Q 013871 281 -----CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKKMF---------------DKLFQAEWKPVSPDK 339 (434)
Q Consensus 281 -----~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~-~g~~~~~~~~---------------~~~~~~~w~p~~~~~ 339 (434)
....++|. +|+.++..-. ++.|.+-|. +|+.+..... +.+..++|.|....+
T Consensus 177 g~~v~~lNeLe~~-dG~lyanvw~------s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rl 249 (268)
T 3nok_A 177 GQPVELINELECA-NGVIYANIWH------SSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRI 249 (268)
T ss_dssp TEECCCEEEEEEE-TTEEEEEETT------CSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCE
T ss_pred CcccccccccEEe-CCEEEEEECC------CCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEE
Confidence 33447888 8864443334 667777776 5555544432 256789999998888
Q ss_pred CCCc
Q 013871 340 FGDI 343 (434)
Q Consensus 340 ~~~~ 343 (434)
|-.+
T Consensus 250 fVTG 253 (268)
T 3nok_A 250 FMTG 253 (268)
T ss_dssp EEEE
T ss_pred EEeC
Confidence 8765
No 282
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.84 E-value=0.32 Score=45.68 Aligned_cols=97 Identities=14% Similarity=0.160 Sum_probs=58.0
Q ss_pred CCeEEEEECcCCCEEEEEEcc-----------------CCCeEEEEecccceeEEe--CCcCeeEEEECCCCCeEEEEec
Q 013871 196 GPVHDVQWSYSGSEFAVVYGF-----------------MPASATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGF 256 (434)
Q Consensus 196 ~~i~~v~wspdg~~~av~~g~-----------------~~~~v~l~d~~~~~~~~~--~~~~~~~i~~SP~g~~l~~~~~ 256 (434)
...+++...++|+.++ ++. ..+.+..||.. .+..+ .-..-|.|+|||||+.|.++..
T Consensus 165 ~~pND~~v~~~G~fyv--t~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--~~~~~~~~l~~pNGia~spDg~~lYvadt 240 (355)
T 3sre_A 165 PSVNDIVAVGPEHFYA--TNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--DVRVVAEGFDFANGINISPDGKYVYIAEL 240 (355)
T ss_dssp SSEEEEEEEETTEEEE--EESCSCSSHHHHHHHHHTTCCCEEEEEECTT--CCEEEEEEESSEEEEEECTTSSEEEEEEG
T ss_pred CCCceEEEeCCCCEEe--cCCcEeCCcccccchhhccCCccEEEEEECC--eEEEeecCCcccCcceECCCCCEEEEEeC
Confidence 3567888888876544 221 11355555553 22211 2244689999999999888875
Q ss_pred CCCCCeEEEEEcc-CCEE--EEEeeCCCce-EEEECC-CCCEEEEEE
Q 013871 257 GNLPGDMAFWDYV-DGKQ--LGTTRAECSV-TSEWSP-DGRYFMTAT 298 (434)
Q Consensus 257 ~~~~g~i~iwd~~-~~~~--i~~~~~~~~~-~~~wsp-dg~~l~tas 298 (434)
.. +.|+.||++ +++. ...+.....- .++..+ +|++.+++.
T Consensus 241 ~~--~~I~~~~~~~~g~l~~~~~~~~~g~PDGi~vD~e~G~lwva~~ 285 (355)
T 3sre_A 241 LA--HKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGCH 285 (355)
T ss_dssp GG--TEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEEE
T ss_pred CC--CeEEEEEECCCCcEecCEEEeCCCCCceEEEeCCCCcEEEEec
Confidence 43 689999986 3321 2233222222 388888 588776654
No 283
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=96.74 E-value=0.0083 Score=62.29 Aligned_cols=113 Identities=11% Similarity=0.035 Sum_probs=74.7
Q ss_pred eEEEEECcCCCEEEEEEccCCCeEEEEecccceeEEeC---CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCE--
Q 013871 198 VHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELG---SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK-- 272 (434)
Q Consensus 198 i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~~~---~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~-- 272 (434)
...+++.+.+..|++ +....+.|.++++.+..+..+. ...-+.|++.|.+.+|+++..+ ..+.|+.+++....
T Consensus 455 P~glavD~~~g~LY~-tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~-~~~~I~~~~~dG~~~~ 532 (699)
T 1n7d_A 455 PDGLAVDWIHSNIYW-TDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLNGVDIY 532 (699)
T ss_dssp CCCEECCCSSSBCEE-CCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCS-SSCCEEBCCSSSCCCC
T ss_pred cceEEEEeeCCcEEE-EeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccC-CCCeEEEEeCCCCCee
Confidence 456788766666655 3445668999999876555442 2345789999988777776543 23688888876432
Q ss_pred EEEEeeCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc
Q 013871 273 QLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS 317 (434)
Q Consensus 273 ~i~~~~~~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~ 317 (434)
.+.......+..++|+|++..|+.+... .+.|.+++++|.
T Consensus 533 ~l~~~~l~~PnGlavd~~~~~LY~aD~~-----~~~I~~~d~dG~ 572 (699)
T 1n7d_A 533 SLVTENIQWPNGITLDLLSGRLYWVDSK-----LHSISSIDVNGG 572 (699)
T ss_dssp EESCSSCSSCCCEEECTTTCCEEEEETT-----TTEEEEECSSSS
T ss_pred EEEeCCCCCccEEEEeccCCEEEEEecC-----CCeEEEEccCCC
Confidence 2211122345569999998877777653 678899998875
No 284
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=96.72 E-value=0.75 Score=48.09 Aligned_cols=108 Identities=11% Similarity=0.129 Sum_probs=69.8
Q ss_pred CCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeEEe-----CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEcc
Q 013871 195 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL-----GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV 269 (434)
Q Consensus 195 ~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~~-----~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~ 269 (434)
...|.++...++|...+ |...+-+..||.+...+..+ ....+.++...++|++.+ |.. +-|..+|..
T Consensus 406 ~~~v~~i~~d~~g~lWi---gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwi-gt~----~Gl~~~~~~ 477 (781)
T 3v9f_A 406 SNSVLCSLKDSEGNLWF---GTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWI-GTH----AGVFVIDLA 477 (781)
T ss_dssp CSBEEEEEECTTSCEEE---EETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEE-EET----TEEEEEESS
T ss_pred CcceEEEEECCCCCEEE---EeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEE-EEC----CceEEEeCC
Confidence 35788999888887665 44445788888876555544 245688888888887554 442 359999988
Q ss_pred CCEEEEEe--e-----CCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc
Q 013871 270 DGKQLGTT--R-----AECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS 317 (434)
Q Consensus 270 ~~~~i~~~--~-----~~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~ 317 (434)
+++..... . ...+..+...++|+..+ |+. ++++..|+..+.
T Consensus 478 ~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi-gt~------~~Gl~~~~~~~~ 525 (781)
T 3v9f_A 478 SKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWI-GTF------GGGVGIYTPDMQ 525 (781)
T ss_dssp SSSCCEEECTTTSSCSCSCEEEEEECTTCCEEE-EES------SSCEEEECTTCC
T ss_pred CCeEEecccCcccccccceeEEEEEcCCCCEEE-EEc------CCCEEEEeCCCC
Confidence 76432222 1 12455688888888544 444 466666765443
No 285
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=96.61 E-value=0.27 Score=45.45 Aligned_cols=121 Identities=14% Similarity=0.177 Sum_probs=77.7
Q ss_pred eEEEE---CCCCCeEEEEEEe--cccccCceeecceeEEEEeeC----CcceeeeecC------------CCCCeEEEEE
Q 013871 145 VQLNW---NRGSTGLLAVAQS--DVDKTNQSYYGESKLNYLTTD----GTHEGLVPLR------------KEGPVHDVQW 203 (434)
Q Consensus 145 ~~~~w---s~~G~~l~~~~~~--~~d~~~~~~~g~~~l~~l~~~----~~~~~~v~l~------------~~~~i~~v~w 203 (434)
..+.| .++|. |+++... ..+..+..+.|...|+.++.. +.....+.|. ..+...+++.
T Consensus 66 sGl~~~~~D~~gr-L~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvav 144 (334)
T 2p9w_A 66 SGLSLLTHDNSKR-LFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQ 144 (334)
T ss_dssp EEEEESSSSSCCE-EEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEE
T ss_pred eEEEEeccCCCCc-EEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEE
Confidence 57889 57754 4443332 223334444455667777766 4333333332 1235789999
Q ss_pred CcCCCEEEEEEccCC-CeEEEEecccceeEEe--C------CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC
Q 013871 204 SYSGSEFAVVYGFMP-ASATIFNKKCRPILEL--G------SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG 271 (434)
Q Consensus 204 spdg~~~av~~g~~~-~~v~l~d~~~~~~~~~--~------~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~ 271 (434)
.++|+.++. +... +.|..++..+..+..+ . ....|-|+++|+|+.|++... .|.|.-+|+.+.
T Consensus 145 D~~GnaYVt--~s~~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~---~g~L~~fD~~~p 216 (334)
T 2p9w_A 145 DRDGNSYVA--FALGMPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGG---PRALTAFDVSKP 216 (334)
T ss_dssp CTTSCEEEE--EEESSCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESS---SSSEEEEECSSS
T ss_pred CCCCCEEEe--CCCCCCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcC---CCeEEEEcCCCC
Confidence 999998884 4445 7888888876543322 1 122568999999999988863 579999998854
No 286
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=96.58 E-value=0.92 Score=47.49 Aligned_cols=265 Identities=10% Similarity=0.072 Sum_probs=141.8
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCC
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFP 81 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~ 81 (434)
|.+|.+.++|+..+. . .++.|..|+..+++........ ....+.++...+++.+.+...++-|.+|+.....
T Consensus 175 i~~i~~d~~g~lwig-t-----~~~Gl~~~~~~~~~~~~~~~~~--~~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~ 246 (795)
T 4a2l_A 175 IASTLYRQGDQIYIG-T-----STDGLYTYSITQKTFEKVIPIL--GTKQIQAILQQSPTRIWVATEGAGLFLINPKTKE 246 (795)
T ss_dssp CEEEEEEETTEEEEE-E-----SSSCEEEEETTTCCEEECC------CCCEEEEEEEETTEEEEEEBSSCEEEEETTTTE
T ss_pred eEEEEECCCCCEEEE-E-----CCCCEEEEeCCCCeEEEecCCC--CCCeeEEEEEcCCCCEEEEECCCCeEEEeCCCCe
Confidence 567778888876663 2 2346889998777653321111 1134446666677877776555568888875522
Q ss_pred Cceeee--------eecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeee--------eccccee
Q 013871 82 KGILYR--------LRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRS--------FFRCSTV 145 (434)
Q Consensus 82 ~~~~~~--------~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~--------~~~~~~~ 145 (434)
. .... +....|.++...+++.-.++. . .-+.+|+... . ...... .....+.
T Consensus 247 ~-~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt----~----~Gl~~~~~~~---~-~~~~~~~~~~~~~~l~~~~i~ 313 (795)
T 4a2l_A 247 I-KNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGT----F----NDLNIYHEGT---D-SFASYSSNPVENGSLSQRSVR 313 (795)
T ss_dssp E-EEECCCTTCTTSCSCSBEEEEEECTTSCEEEEE----S----SCEEEEETTT---T-EEEEECCCTTSTTSCSSSCEE
T ss_pred E-EEeecCCCCccccCCCeEEEEEEcCCCCEEEEe----C----ChhheEcCCC---C-eEEEEecCCCCCCCCCCCcEE
Confidence 1 1111 112346676666653322221 1 1245555433 1 111110 1112334
Q ss_pred EEEECCCCCeEEEEEEecccccCceeecc--eeEEEEeeCCcceeeeecC------CCCCeEEEEECcCCCEEEEEEccC
Q 013871 146 QLNWNRGSTGLLAVAQSDVDKTNQSYYGE--SKLNYLTTDGTHEGLVPLR------KEGPVHDVQWSYSGSEFAVVYGFM 217 (434)
Q Consensus 146 ~~~ws~~G~~l~~~~~~~~d~~~~~~~g~--~~l~~l~~~~~~~~~v~l~------~~~~i~~v~wspdg~~~av~~g~~ 217 (434)
++...++|. .|.|. .+|+.++.....-...... ....|.++...++|...+ |..
T Consensus 314 ~i~~D~~g~---------------lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lWi---Gt~ 375 (795)
T 4a2l_A 314 SIFMDSQGG---------------MWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNLWI---GTN 375 (795)
T ss_dssp EEEECTTSC---------------EEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCEEE---EES
T ss_pred EEEEeCCcC---------------EEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCCEEE---EEC
Confidence 444445544 33222 1345443322111111100 135689999988887655 555
Q ss_pred CCeEEEEecccceeEEe-----------CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEee------CC
Q 013871 218 PASATIFNKKCRPILEL-----------GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTR------AE 280 (434)
Q Consensus 218 ~~~v~l~d~~~~~~~~~-----------~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~------~~ 280 (434)
.+-+..||.+......+ ....+.+++..++|++|.+|..+ +-|.++|.++++...... ..
T Consensus 376 ~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~---~Gl~~~d~~~~~~~~~~~~~~~l~~~ 452 (795)
T 4a2l_A 376 DGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHA---GGLSILHRNSGQVENFNQRNSQLVNE 452 (795)
T ss_dssp SSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETT---TEEEEEETTTCCEEEECTTTSCCSCS
T ss_pred CCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCc---CceeEEeCCCCcEEEeecCCCCcCCC
Confidence 66788888865544333 23567788888999855566643 469999988775433221 23
Q ss_pred CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecC
Q 013871 281 CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG 316 (434)
Q Consensus 281 ~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g 316 (434)
.+..+...++|+..+ |+ .+++.+|+...
T Consensus 453 ~v~~i~~d~~g~lwi-gt-------~~Gl~~~~~~~ 480 (795)
T 4a2l_A 453 NVYAILPDGEGNLWL-GT-------LSALVRFNPEQ 480 (795)
T ss_dssp CEEEEEECSSSCEEE-EE-------SSCEEEEETTT
T ss_pred eeEEEEECCCCCEEE-Ee-------cCceeEEeCCC
Confidence 455678888887544 33 34566666543
No 287
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=96.55 E-value=0.00077 Score=64.35 Aligned_cols=110 Identities=15% Similarity=0.118 Sum_probs=45.9
Q ss_pred CeEEEEECcCCCEEEEEEccCCCeEEEEecc-cceeEEeCC--c-Ce-eEEEECCCCCeEEEEecCCCCCeEEEEEccCC
Q 013871 197 PVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILELGS--G-PY-NTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG 271 (434)
Q Consensus 197 ~i~~v~wspdg~~~av~~g~~~~~v~l~d~~-~~~~~~~~~--~-~~-~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~ 271 (434)
++.+..+.+++..++ .+..++.+..||.+ ++.+..+.. . .+ .+..++ ++..|++++ .+|.|+.||.+++
T Consensus 39 ~~~s~p~~~~g~~~v--~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~-~~~~v~~g~---~dg~v~a~D~~tG 112 (369)
T 2hz6_A 39 PVLQVPTHVEEPAFL--PDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASPCRS-SDGILYMGK---KQDIWYVIDLLTG 112 (369)
T ss_dssp CSCCCC-----CCEE--ECTTTCCEEEC-----CCSEECSCCHHHHHTTCSCC------CCCCE---EEEEEEEECCC--
T ss_pred CceecceEcCCCEEE--EeCCCCEEEEEECCCCceeeeeeccCccccccCceEe-cCCEEEEEe---CCCEEEEEECCCC
Confidence 333344445665555 46778999999985 444333321 1 11 111111 344555555 4469999999999
Q ss_pred EEEEEeeCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceee
Q 013871 272 KQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFF 320 (434)
Q Consensus 272 ~~i~~~~~~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~-~g~~~~ 320 (434)
+.+..+..+. ...++|++..|++++. |+.|+.||. +|+++.
T Consensus 113 ~~~w~~~~~~--~~~~~p~~~~v~~~~~------dg~v~a~d~~tG~~~W 154 (369)
T 2hz6_A 113 EKQQTLSSAF--ADSLSPSTSLLYLGRT------EYTITMYDTKTRELRW 154 (369)
T ss_dssp ----------------------EEEEEE------EEEEECCCSSSSSCCC
T ss_pred cEEEEecCCC--cccccccCCEEEEEec------CCEEEEEECCCCCEEE
Confidence 9888776553 2456789999999988 888888887 565443
No 288
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=96.49 E-value=0.84 Score=45.91 Aligned_cols=59 Identities=19% Similarity=0.224 Sum_probs=40.9
Q ss_pred CCeEEEEEccCCEEEEEeeCCC-ceEEEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceeeeeec
Q 013871 260 PGDMAFWDYVDGKQLGTTRAEC-SVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKKMF 324 (434)
Q Consensus 260 ~g~i~iwd~~~~~~i~~~~~~~-~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~-~g~~~~~~~~ 324 (434)
.|.|..||..+++.+..+.... .........+..+++++. |+.|++||. +|+++.+...
T Consensus 443 ~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg~v~~g~~------dg~l~a~D~~tG~~lw~~~~ 503 (571)
T 2ad6_A 443 MGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATL------DGYLKALDNKDGKELWNFKM 503 (571)
T ss_dssp CEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECT------TSEEEEEETTTCCEEEEEEC
T ss_pred CCeEEEEECCCCCEEEEecCCCCccceeEEECCCEEEEEcC------CCeEEEEECCCCCEEEEEeC
Confidence 4799999999998887775432 112222334566777777 999999997 6777765543
No 289
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=96.47 E-value=0.29 Score=50.23 Aligned_cols=69 Identities=14% Similarity=0.056 Sum_probs=45.2
Q ss_pred eEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCC-CeeeecCCCcEEEEec--C-----CeEEEE
Q 013871 4 LLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTW-PSIRFSSDEAVACRMA--T-----NEIQFF 75 (434)
Q Consensus 4 ~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~-~~~~~S~d~~~la~~~--~-----~~i~v~ 75 (434)
++++.++|+.+++.+. .+..+.+||..+++-... .. .....+ .+....+|+++++.++ + +.+.+|
T Consensus 247 ~~~~~~~g~lyv~GG~----~~~~v~~yd~~t~~W~~~-~~--~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~y 319 (656)
T 1k3i_A 247 GISMDGNGQIVVTGGN----DAKKTSLYDSSSDSWIPG-PD--MQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVY 319 (656)
T ss_dssp EEEECTTSCEEEECSS----STTCEEEEEGGGTEEEEC-CC--CSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEE
T ss_pred cccCCCCCCEEEeCCC----CCCceEEecCcCCceeEC-CC--CCccccccceEEecCCeEEEEeCcccCCcccccceEe
Confidence 3677899998888762 234799999988754322 11 111222 2455667999888875 2 579999
Q ss_pred eCCC
Q 013871 76 DTTD 79 (434)
Q Consensus 76 ~~~~ 79 (434)
|...
T Consensus 320 d~~t 323 (656)
T 1k3i_A 320 SPSS 323 (656)
T ss_dssp ETTT
T ss_pred CCCC
Confidence 9865
No 290
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=96.39 E-value=1 Score=45.84 Aligned_cols=221 Identities=7% Similarity=-0.006 Sum_probs=119.0
Q ss_pred CCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe--cCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCC
Q 013871 25 EKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM--ATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAP 102 (434)
Q Consensus 25 d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~--~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~ 102 (434)
...|+..++.+......+..... .....++|.+++..+... .++.|+.+++..................+++.+.+
T Consensus 14 ~~~I~~i~l~~~~~~~~~~~~~~--~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~ 91 (628)
T 4a0p_A 14 RADIRRISLETNNNNVAIPLTGV--KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLG 91 (628)
T ss_dssp TTEEEEEESSCTTCEEECCCCSC--SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTT
T ss_pred CCcEEEEECCCCCcceEEEcCCC--CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCC
Confidence 46788889876553333222211 233378999876655544 45799999886533212222122345677777653
Q ss_pred CCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEee
Q 013871 103 GSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTT 182 (434)
Q Consensus 103 ~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~ 182 (434)
+. | +|... ..+.|.+.++.... ...+.. ..-..-..+...|....|.+ ++. .. ...|+.++.
T Consensus 92 ~~-L-Y~tD~---~~~~I~v~~~dG~~-~~~l~~--~~l~~P~~iavdp~~G~lY~-tD~--g~-------~~~I~r~~~ 153 (628)
T 4a0p_A 92 KN-L-YWADT---GTNRIEVSKLDGQH-RQVLVW--KDLDSPRALALDPAEGFMYW-TEW--GG-------KPKIDRAAM 153 (628)
T ss_dssp TE-E-EEEET---TTTEEEEEETTSTT-CEEEEC--SSCCCEEEEEEETTTTEEEE-EEC--SS-------SCEEEEEET
T ss_pred CE-E-EEEEC---CCCEEEEEecCCCc-EEEEEe--CCCCCcccEEEccCCCeEEE-eCC--CC-------CCEEEEEeC
Confidence 32 2 23221 23577777775411 111111 11123356777775555443 221 11 224677776
Q ss_pred CCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeEEe--CCcCeeEEEECCCCCeEEEEecCCCC
Q 013871 183 DGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLP 260 (434)
Q Consensus 183 ~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~ 260 (434)
+|.....+ +..-.....++++++++.+.++ ....+.|..+|+.+.....+ ....-..|++. +..|.++...+
T Consensus 154 dG~~~~~l-~~~~~~P~GlalD~~~~~LY~a-D~~~~~I~~~d~dG~~~~v~~~~l~~P~glav~--~~~ly~tD~~~-- 227 (628)
T 4a0p_A 154 DGSERTTL-VPNVGRANGLTIDYAKRRLYWT-DLDTNLIESSNMLGLNREVIADDLPHPFGLTQY--QDYIYWTDWSR-- 227 (628)
T ss_dssp TSCSCEEE-ECSCSSEEEEEEETTTTEEEEE-ETTTTEEEEEETTSCSCEEEEECCSCEEEEEEE--TTEEEEEETTT--
T ss_pred CCCceEEE-ECCCCCcceEEEccccCEEEEE-ECCCCEEEEEcCCCCceEEeeccCCCceEEEEE--CCEEEEecCCC--
Confidence 66532222 2333456789999998888874 45567999999875433222 11222345553 34666666543
Q ss_pred CeEEEEEccCC
Q 013871 261 GDMAFWDYVDG 271 (434)
Q Consensus 261 g~i~iwd~~~~ 271 (434)
+.|...|..++
T Consensus 228 ~~I~~~dk~tg 238 (628)
T 4a0p_A 228 RSIERANKTSG 238 (628)
T ss_dssp TEEEEEETTTC
T ss_pred CEEEEEECCCC
Confidence 68888887655
No 291
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=96.35 E-value=1.1 Score=45.64 Aligned_cols=228 Identities=9% Similarity=-0.004 Sum_probs=124.1
Q ss_pred CcEEEEecCCeEEEEeCCCCCCceeeee-ecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeee
Q 013871 61 EAVACRMATNEIQFFDTTDFPKGILYRL-RVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSF 139 (434)
Q Consensus 61 ~~~la~~~~~~i~v~~~~~~~~~~~~~~-~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~ 139 (434)
+.+|.+...++|+..++..........+ .+.....++|++..+ .| +|... ..+.|..+++.. .........
T Consensus 6 ~~~Ll~s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~-~l-ywtD~---~~~~I~r~~~~g---~~~~~v~~~ 77 (628)
T 4a0p_A 6 EAFLLFSRRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDN-RI-YWTDI---SLKTISRAFMNG---SALEHVVEF 77 (628)
T ss_dssp CCEEEEEETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTT-EE-EEEET---TTTEEEEEETTS---CSCEEEECS
T ss_pred CcEEEEEeCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCC-EE-EEEEC---CCCeEEEEECCC---CCcEEEEeC
Confidence 4467777778999999876432111111 234577889998733 33 33322 224666666543 111111111
Q ss_pred cccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCC
Q 013871 140 FRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPA 219 (434)
Q Consensus 140 ~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~ 219 (434)
.......++....+..|.+. +. +...|..++..|.....+....-..-.++++.|....+.+.--....
T Consensus 78 g~~~P~GlAvD~~~~~LY~t-D~----------~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~ 146 (628)
T 4a0p_A 78 GLDYPEGMAVDWLGKNLYWA-DT----------GTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKP 146 (628)
T ss_dssp SCSCCCEEEEETTTTEEEEE-ET----------TTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSC
T ss_pred CCCCcceEEEEeCCCEEEEE-EC----------CCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCC
Confidence 10122344444445555432 11 11245666666654332221223445899999976666653322356
Q ss_pred eEEEEecccceeEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC--EEEEEeeCCCceEEEECCCCCEEE
Q 013871 220 SATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG--KQLGTTRAECSVTSEWSPDGRYFM 295 (434)
Q Consensus 220 ~v~l~d~~~~~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~--~~i~~~~~~~~~~~~wspdg~~l~ 295 (434)
+|...++.+.....+ .-..-+.|+++++++.|.++..++ +.|+.+|++.. +.+.. ....+..++... .+|.
T Consensus 147 ~I~r~~~dG~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~--~~I~~~d~dG~~~~v~~~-~l~~P~glav~~--~~ly 221 (628)
T 4a0p_A 147 KIDRAAMDGSERTTLVPNVGRANGLTIDYAKRRLYWTDLDT--NLIESSNMLGLNREVIAD-DLPHPFGLTQYQ--DYIY 221 (628)
T ss_dssp EEEEEETTSCSCEEEECSCSSEEEEEEETTTTEEEEEETTT--TEEEEEETTSCSCEEEEE-CCSCEEEEEEET--TEEE
T ss_pred EEEEEeCCCCceEEEECCCCCcceEEEccccCEEEEEECCC--CEEEEEcCCCCceEEeec-cCCCceEEEEEC--CEEE
Confidence 888888876554433 334568899999999888887654 78999998754 22221 222444466543 3555
Q ss_pred EEEcCCceeeCCcEEEEee-cCc
Q 013871 296 TATTAPRLQIDNGIKIFHH-NGS 317 (434)
Q Consensus 296 tas~~prl~~D~~i~iw~~-~g~ 317 (434)
.+... .+.|...|. +|+
T Consensus 222 ~tD~~-----~~~I~~~dk~tg~ 239 (628)
T 4a0p_A 222 WTDWS-----RRSIERANKTSGQ 239 (628)
T ss_dssp EEETT-----TTEEEEEETTTCC
T ss_pred EecCC-----CCEEEEEECCCCC
Confidence 55432 566666663 454
No 292
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=96.34 E-value=1.1 Score=45.85 Aligned_cols=76 Identities=12% Similarity=0.173 Sum_probs=50.3
Q ss_pred CeEEEEecccce-eEEe-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCC-c--eEEEECCCCCE
Q 013871 219 ASATIFNKKCRP-ILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAEC-S--VTSEWSPDGRY 293 (434)
Q Consensus 219 ~~v~l~d~~~~~-~~~~-~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~-~--~~~~wspdg~~ 293 (434)
+.+.-||+++.. +-+. ...+.....+...|.++++++ .+|.|+.||.++++.+..+.... + .-+.+..+|+.
T Consensus 438 g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~g~---~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~~ 514 (668)
T 1kv9_A 438 GALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGT---AAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQ 514 (668)
T ss_dssp EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEEC---TTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred ceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEEEC---CcccchhhhhhcChhheEecCCCCcccCceEEEECCEE
Confidence 578889986443 3333 223334344555778888876 66899999999999998886542 1 22667788884
Q ss_pred EEEE
Q 013871 294 FMTA 297 (434)
Q Consensus 294 l~ta 297 (434)
.++.
T Consensus 515 yva~ 518 (668)
T 1kv9_A 515 YVAI 518 (668)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4433
No 293
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=96.29 E-value=0.85 Score=43.79 Aligned_cols=232 Identities=9% Similarity=0.131 Sum_probs=139.7
Q ss_pred CeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEE
Q 013871 70 NEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNW 149 (434)
Q Consensus 70 ~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~w 149 (434)
++|.|.|+.+........+. ..+.-++|. .+.||+-. ...++|+++.. .+.+....+ ..+++-.+|
T Consensus 48 ~~vvIiDl~~~~~~~rrpi~---AdsAIMnP~-~~iiALra------g~~lQiFnle~---K~klks~~~-~e~VvfWkW 113 (494)
T 1bpo_A 48 AQVVIIDMNDPSNPIRRPIS---ADSAIMNPA-SKVIALKA------GKTLQIFNIEM---KSKMKAHTM-TDDVTFWKW 113 (494)
T ss_dssp CEEEEEETTSTTSCEEEECC---CSEEEECSS-SSCEEEEE------TTEEEEEETTT---TEEEEEEEC-SSCCCEEEE
T ss_pred CeEEEEECCCCCcceecccc---cceeeeCCC-CcEEEEec------CCeEEEEchHH---hhhhcceec-CCCceEEEe
Confidence 48999999886653222222 335567887 57777642 35899999988 666766655 346777788
Q ss_pred CCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecC-----CCCCeEEEEECcCCCEEEEEEc-----cCCC
Q 013871 150 NRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR-----KEGPVHDVQWSYSGSEFAVVYG-----FMPA 219 (434)
Q Consensus 150 s~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~-----~~~~i~~v~wspdg~~~av~~g-----~~~~ 219 (434)
-.+. .|.+++ ++.+|.+++.+.......++ ....|-...-+++.++++++.= ...|
T Consensus 114 is~~-~l~lVT-------------~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G 179 (494)
T 1bpo_A 114 ISLN-TVALVT-------------DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVG 179 (494)
T ss_dssp EETT-EEEEEC-------------SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEE
T ss_pred cCCC-eEEEEc-------------CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccc
Confidence 6553 344432 22467777665322211111 1467788889999999987521 1345
Q ss_pred eEEEEecccceeEEeCCcCeeEEEECCCC-----CeEEEEecCCCCCeEEEEEccCC---------EEEEEeeC-----C
Q 013871 220 SATIFNKKCRPILELGSGPYNTVRWNPKG-----KFLCLAGFGNLPGDMAFWDYVDG---------KQLGTTRA-----E 280 (434)
Q Consensus 220 ~v~l~d~~~~~~~~~~~~~~~~i~~SP~g-----~~l~~~~~~~~~g~i~iwd~~~~---------~~i~~~~~-----~ 280 (434)
.+.+|..+.+...-+......-..+-.+| .+++.+......+++.|.++... +.+..+-. .
T Consensus 180 ~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~D 259 (494)
T 1bpo_A 180 AMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQND 259 (494)
T ss_dssp EEEEEESTTCCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTC
T ss_pred eEEEeeccccccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccC
Confidence 78899886544333322222222333333 25666655433478999988532 22221111 1
Q ss_pred CceEEEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceeeeeec--ccceeeEEEcC
Q 013871 281 CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKKMF--DKLFQAEWKPV 335 (434)
Q Consensus 281 ~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~-~g~~~~~~~~--~~~~~~~w~p~ 335 (434)
-++.+..|+.-..+..-+. -|-+.++|+ +|.+++.... +.++-.+-...
T Consensus 260 FPvamqvs~kygviyviTK------~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~ 311 (494)
T 1bpo_A 260 FPVAMQISEKHDVVFLITK------YGYIHLYDLETGTCIYMNRISGETIFVTAPHEA 311 (494)
T ss_dssp CEEEEEEETTTTEEEEEET------TSEEEEEETTTCCEEEEEECCSSCEEEEEEETT
T ss_pred ceeEEEecccCCEEEEEec------CceEEEEecccceeeeeecccCCceEEecccCC
Confidence 3456888888888888888 789999999 6777776644 34554444433
No 294
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=96.28 E-value=0.86 Score=43.75 Aligned_cols=267 Identities=15% Similarity=0.145 Sum_probs=148.8
Q ss_pred CcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCCCceeeeeec
Q 013871 11 GLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPKGILYRLRV 90 (434)
Q Consensus 11 g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~~~~~~~~~ 90 (434)
.+|++.-+. ..++.+|.|-|+.++..+.+..-.. + +.--.|..+.+|.-.+.+++|||+....+.....+ .
T Consensus 35 DkyicVrE~--~~~~~~vvIiDl~~~~~~~rrpi~A---d---sAIMnP~~~iiALrag~~lQiFnle~K~klks~~~-~ 105 (494)
T 1bpo_A 35 DKFICIREK--VGEQAQVVIIDMNDPSNPIRRPISA---D---SAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTM-T 105 (494)
T ss_dssp TTEEEEEEC--CTTCCEEEEEETTSTTSCEEEECCC---S---EEEECSSSSCEEEEETTEEEEEETTTTEEEEEEEC-S
T ss_pred CceEEEEec--CCCCCeEEEEECCCCCcceeccccc---c---eeeeCCCCcEEEEecCCeEEEEchHHhhhhcceec-C
Confidence 467766553 2234589999998876554433321 1 33457778888877788999999988554332222 3
Q ss_pred CCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeee----ecccceeEEEECCCCCeEEEEEEecccc
Q 013871 91 PGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRS----FFRCSTVQLNWNRGSTGLLAVAQSDVDK 166 (434)
Q Consensus 91 ~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~----~~~~~~~~~~ws~~G~~l~~~~~~~~d~ 166 (434)
+.|..-.|-.. ..+++... ..|.-|++... ..++.... +....+....-+++.++++++.-...+.
T Consensus 106 e~VvfWkWis~--~~l~lVT~------taVyHWsi~~~--s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~ 175 (494)
T 1bpo_A 106 DDVTFWKWISL--NTVALVTD------NAVYHWSMEGE--SQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQN 175 (494)
T ss_dssp SCCCEEEEEET--TEEEEECS------SEEEEEESSSS--CCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETT
T ss_pred CCceEEEecCC--CeEEEEcC------CeeEEecccCC--CCchhheecchhcccceEEEEEECCCCCeEEEEeecccCC
Confidence 45666666543 45555432 35677777542 33332222 2245667778899999988775543333
Q ss_pred cCceeecceeEEEEeeCCcceeeeecCCCCCeEEEE-ECcCC-----CEEEEEEcc-CCCeEEEEecccc----e-----
Q 013871 167 TNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQ-WSYSG-----SEFAVVYGF-MPASATIFNKKCR----P----- 230 (434)
Q Consensus 167 ~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~-wspdg-----~~~av~~g~-~~~~v~l~d~~~~----~----- 230 (434)
...|...||.. .......+ +|..-+++ +-.+| ..|+++... ..+++.|.++... +
T Consensus 176 ---~v~G~mQLYS~--er~~sQ~i----eGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk 246 (494)
T 1bpo_A 176 ---RVVGAMQLYSV--DRKVSQPI----EGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKK 246 (494)
T ss_dssp ---EEEEEEEEEES--TTCCEEEE----CCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCE
T ss_pred ---cccceEEEeec--cccccchh----eeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccce
Confidence 22365555544 23222221 33332221 22222 234443222 1258888887321 1
Q ss_pred eEEe--C----CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceEEEECCCCCEEEEEEcCCcee
Q 013871 231 ILEL--G----SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQ 304 (434)
Q Consensus 231 ~~~~--~----~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~~~wspdg~~l~tas~~prl~ 304 (434)
..++ . .+.-.++..|+.-..+.+-. .-|.|++||++++.++..-. .|+|--+ +++...
T Consensus 247 ~vdv~fppe~~~DFPvamqvs~kygviyviT---K~G~i~lyDleTgt~i~~nr--------Is~~~iF-~t~~~~---- 310 (494)
T 1bpo_A 247 AVDVFFPPEAQNDFPVAMQISEKHDVVFLIT---KYGYIHLYDLETGTCIYMNR--------ISGETIF-VTAPHE---- 310 (494)
T ss_dssp EEECCCCTTSTTCCEEEEEEETTTTEEEEEE---TTSEEEEEETTTCCEEEEEE--------CCSSCEE-EEEEET----
T ss_pred eeeeeCCcccccCceeEEEecccCCEEEEEe---cCceEEEEecccceeeeeec--------ccCCceE-EecccC----
Confidence 1121 1 22334677888777777776 55799999999998877654 3444333 333221
Q ss_pred eCCcEEEEeecCceeee
Q 013871 305 IDNGIKIFHHNGSLFFK 321 (434)
Q Consensus 305 ~D~~i~iw~~~g~~~~~ 321 (434)
-.++|..-+-.|+.+..
T Consensus 311 ~~~Gi~~Vnr~GqVl~v 327 (494)
T 1bpo_A 311 ATAGIIGVNRKGQVLSV 327 (494)
T ss_dssp TTTEEEEEETTCEEEEE
T ss_pred CCCcEEEEccCceEEEE
Confidence 04566666666665544
No 295
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=96.27 E-value=0.069 Score=50.35 Aligned_cols=142 Identities=11% Similarity=0.099 Sum_probs=80.2
Q ss_pred CeEEEEECcCCCEEEEEEccCCCeEEEEecccc-eeEEe-----CCcCeeEEEECCC---CCeEEEEecC-CCC----Ce
Q 013871 197 PVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PILEL-----GSGPYNTVRWNPK---GKFLCLAGFG-NLP----GD 262 (434)
Q Consensus 197 ~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~-~~~~~-----~~~~~~~i~~SP~---g~~l~~~~~~-~~~----g~ 262 (434)
.-..++|.|+|+.++ ...++.|.++|..+. .+..+ .....+.|+++|+ +..|.++... ..+ ..
T Consensus 30 ~P~~ia~~pdG~l~V---~e~~g~I~~~d~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~ 106 (354)
T 3a9g_A 30 VPWSIAPLGGGRYLV---TERPGRLVLISPSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR 106 (354)
T ss_dssp CEEEEEEEETTEEEE---EETTTEEEEECSSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred CCeEEEEcCCCeEEE---EeCCCEEEEEeCCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence 457899999997444 344589999986544 22222 2345688999998 5544444321 011 36
Q ss_pred EEEEEccCC-------EEE-EEee---CCCceEEEECCCCCEEEEEEcCCce-------eeCCcEEEEeecCc-------
Q 013871 263 MAFWDYVDG-------KQL-GTTR---AECSVTSEWSPDGRYFMTATTAPRL-------QIDNGIKIFHHNGS------- 317 (434)
Q Consensus 263 i~iwd~~~~-------~~i-~~~~---~~~~~~~~wspdg~~l~tas~~prl-------~~D~~i~iw~~~g~------- 317 (434)
|..|+.... +.+ ..+. .|....+.|.|||..+++.+..-.. ...+.|.-.+.+|+
T Consensus 107 v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf 186 (354)
T 3a9g_A 107 VIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPF 186 (354)
T ss_dssp EEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSS
T ss_pred EEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCC
Confidence 777876643 222 2222 2455569999999866664321000 01234555555665
Q ss_pred ---eeeeeecccceeeEEEcCCCCCCC
Q 013871 318 ---LFFKKMFDKLFQAEWKPVSPDKFG 341 (434)
Q Consensus 318 ---~~~~~~~~~~~~~~w~p~~~~~~~ 341 (434)
.++..-...-+.++|.|+.-.||.
T Consensus 187 ~~~~i~a~G~rnp~Gla~d~~~g~l~v 213 (354)
T 3a9g_A 187 PNSPIWSYGHRNPQGIDWHRASGVMVA 213 (354)
T ss_dssp TTCCEEEECCSCCCEEEECTTTCCEEE
T ss_pred CCCcEEEEccCCcceEEEeCCCCCEEE
Confidence 233333344567888885444544
No 296
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=96.27 E-value=0.7 Score=42.64 Aligned_cols=248 Identities=11% Similarity=0.159 Sum_probs=146.1
Q ss_pred eeeecCCCcEEEEe-c--CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCC
Q 013871 54 SIRFSSDEAVACRM-A--TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQ 130 (434)
Q Consensus 54 ~~~~S~d~~~la~~-~--~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~ 130 (434)
.+.+..|--.|++- . +++|.|.|+.+..... +-... ..+.-++|. .+.+|+-. ...++|+++..
T Consensus 30 ~lTmESDkyicVrE~~~~~~~VvIiDl~n~~~~~--Rrpi~-AdsAIMnP~-~~ViALra------g~~LQiFnlet--- 96 (365)
T 2xzh_A 30 TLTMESDKFICIREKVGEQAQVVIIDMNDPSNPI--RRPIS-ADSAIMNPA-SKVIALKA------GKTLQIFNIEM--- 96 (365)
T ss_dssp TEEEEETTEEEEEEEETTEEEEEEEETTSTTSCE--EEECC-CSEEEECSS-SSEEEEEE------TTEEEEEETTT---
T ss_pred eeeeecCceEEEEecCCCCCEEEEEECCCCCCcc--ccccc-cceeeeCCC-ccEEEEec------CCeEEEechHH---
Confidence 34444444344443 2 2489999998866532 22222 234567887 67777642 35799999988
Q ss_pred CCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecC-----CCCCeEEEEECc
Q 013871 131 SQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR-----KEGPVHDVQWSY 205 (434)
Q Consensus 131 ~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~-----~~~~i~~v~wsp 205 (434)
.+.+....+ ..+++-.+|-.+.+ |.+++.+ .+|.+++.+......-++ ....|-...-++
T Consensus 97 K~klks~~~-~e~VvfWkWis~~~-L~lVT~t-------------aVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~ 161 (365)
T 2xzh_A 97 KSKMKAHTM-TDDVTFWKWISLNT-VALVTDN-------------AVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDA 161 (365)
T ss_dssp TEEEEEEEC-SSCEEEEEECSSSE-EEEEESS-------------EEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECT
T ss_pred hhhhcceec-CCccEEEEecCCCe-EEEEcCC-------------cEEEEcccCCCCCceeeecchhcccceEEEEEECC
Confidence 677776665 35777778876543 4444322 356666655322211111 146777888899
Q ss_pred CCCEEEEEEc-----cCCCeEEEEecccceeEEeCCcCeeEEEECCCCC-----eEEEEecCCCCCeEEEEEccCC----
Q 013871 206 SGSEFAVVYG-----FMPASATIFNKKCRPILELGSGPYNTVRWNPKGK-----FLCLAGFGNLPGDMAFWDYVDG---- 271 (434)
Q Consensus 206 dg~~~av~~g-----~~~~~v~l~d~~~~~~~~~~~~~~~~i~~SP~g~-----~l~~~~~~~~~g~i~iwd~~~~---- 271 (434)
+.++++++.= ...|.+.||..+.+...-+......-..+-.+|. +++.+......+++.|-++...
T Consensus 162 ~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~ 241 (365)
T 2xzh_A 162 KQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGN 241 (365)
T ss_dssp TSCEEEEEEEEEETTEEEEEEEEEETTTTEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTC
T ss_pred CCCEEEEEeEeccCCccceeEEEEeecccccceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCC
Confidence 9999988521 1335788998865544444222222233433333 5666654322358899887431
Q ss_pred -----EEEEEeeC-----CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceeeeeec--ccceeeEEEcC
Q 013871 272 -----KQLGTTRA-----ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKKMF--DKLFQAEWKPV 335 (434)
Q Consensus 272 -----~~i~~~~~-----~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~-~g~~~~~~~~--~~~~~~~w~p~ 335 (434)
+.+..+-. .-++.+..|+--..+..-+. -|-++++|+ +|.+++.... +.++..+-...
T Consensus 242 ~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK------~G~ihlyDleTgt~i~~nrIS~d~iF~ta~~~~ 312 (365)
T 2xzh_A 242 QPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK------YGYIHLYDLETGTCIYMNRISGETIFVTAPHEA 312 (365)
T ss_dssp CCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEET------TSEEEEEETTTCCEEEEEECCSSCEEEEEEEGG
T ss_pred CCcccccceeeCCccccCCceEEEEecccCCEEEEEeC------CcEEEEEEcccCcEEEEeccCCCceEEecccCC
Confidence 22221111 13455788888888888888 799999999 6778877644 45555554443
No 297
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=96.25 E-value=1 Score=44.27 Aligned_cols=146 Identities=8% Similarity=-0.099 Sum_probs=73.1
Q ss_pred ceEEecC-CCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCc-CCCCCCeeee-------cCCCcEEEEecC-C--
Q 013871 3 LLLTCLR-VGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNM-TKTTWPSIRF-------SSDEAVACRMAT-N-- 70 (434)
Q Consensus 3 ~~l~fSP-~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~-~~~~~~~~~~-------S~d~~~la~~~~-~-- 70 (434)
..|+|+| ++..|..+.+ ..+.|++.|+.++.. ..+..... .......++| ++++.+|..... +
T Consensus 142 ~~la~dp~~~~~Lyv~~~----~~~~i~~ID~~~~~v-~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~ 216 (496)
T 3kya_A 142 GRLAFDPLNKDHLYICYD----GHKAIQLIDLKNRML-SSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGK 216 (496)
T ss_dssp EEEEEETTEEEEEEEEEE----TEEEEEEEETTTTEE-EEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTT
T ss_pred CEEEEccCCCCEEEEEEC----CCCeEEEEECCCCEE-EEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCC
Confidence 4689999 4555554442 235688889877654 44332211 0012336889 999985555532 2
Q ss_pred -----eEEEEeCCC-CCCce----eeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcC-------CCCCCCc
Q 013871 71 -----EIQFFDTTD-FPKGI----LYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACG-------KDLQSQP 133 (434)
Q Consensus 71 -----~i~v~~~~~-~~~~~----~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~-------~~~~~~~ 133 (434)
.|.+++... ..... ...........++++|+.+.++.+ . ...+.|..+++. +.....+
T Consensus 217 ~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvt-d----~~~g~V~r~d~~~~~~~~~tg~~~tp 291 (496)
T 3kya_A 217 GDESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFN-S----YEKGQVFRLDLVDYFKTIKNGGSWDP 291 (496)
T ss_dssp GGGEEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEE-E----TTTTEEEEECHHHHHHHHHTTCCCCC
T ss_pred cccCceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEE-E----CCCCEEEEEecccccccccCceeecc
Confidence 266665332 11100 011123345677888864443222 1 123467777775 3110000
Q ss_pred --------eeee-eec-ccceeEEEECCCCCeEEE
Q 013871 134 --------LARR-SFF-RCSTVQLNWNRGSTGLLA 158 (434)
Q Consensus 134 --------i~~~-~~~-~~~~~~~~ws~~G~~l~~ 158 (434)
...+ ... ......++|+|+|+.|.+
T Consensus 292 ~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYv 326 (496)
T 3kya_A 292 IVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYF 326 (496)
T ss_dssp BGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEE
T ss_pred cccccccccceeEecCCCCCceEEEEcCCCCEEEE
Confidence 1111 111 122457999999996554
No 298
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=96.21 E-value=1.2 Score=44.94 Aligned_cols=77 Identities=12% Similarity=0.062 Sum_probs=45.6
Q ss_pred CeEEEEeccc-ceeEEeC-CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCC-c--eEEEECCCCCE
Q 013871 219 ASATIFNKKC-RPILELG-SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAEC-S--VTSEWSPDGRY 293 (434)
Q Consensus 219 ~~v~l~d~~~-~~~~~~~-~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~-~--~~~~wspdg~~ 293 (434)
+.+.-||++. +.+-+.. ..+...-...-.|.++++++ .+|.|+.||.++++++..++... + .-+.|..||+.
T Consensus 453 G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagg~vf~gt---~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~q 529 (599)
T 1w6s_A 453 GQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGT---LDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQ 529 (599)
T ss_dssp EEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEEC---TTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred CeEEEEECCCCCEEeEecCCCCccCcceEecCCEEEEEC---CCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCEE
Confidence 4677777753 3333331 11221111222466666666 67899999999999998886542 1 22677788875
Q ss_pred EEEEE
Q 013871 294 FMTAT 298 (434)
Q Consensus 294 l~tas 298 (434)
++...
T Consensus 530 yv~~~ 534 (599)
T 1w6s_A 530 YVAIY 534 (599)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 44433
No 299
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=96.20 E-value=0.21 Score=47.02 Aligned_cols=140 Identities=11% Similarity=0.123 Sum_probs=77.4
Q ss_pred eeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeec----CCCCCeEEEEECcC---CCEEEEEEcc
Q 013871 144 TVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL----RKEGPVHDVQWSYS---GSEFAVVYGF 216 (434)
Q Consensus 144 ~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l----~~~~~i~~v~wspd---g~~~av~~g~ 216 (434)
-..|.|.|+|. |++ +. . .+ .|+.++..+. +....+ ...+....++++|+ +..|.+.+..
T Consensus 31 P~~ia~~pdG~-l~V-~e--~--~g-------~I~~~d~~G~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~ 96 (354)
T 3a9g_A 31 PWSIAPLGGGR-YLV-TE--R--PG-------RLVLISPSGK-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASY 96 (354)
T ss_dssp EEEEEEEETTE-EEE-EE--T--TT-------EEEEECSSCE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEE
T ss_pred CeEEEEcCCCe-EEE-Ee--C--CC-------EEEEEeCCCc-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEec
Confidence 34788999997 333 22 1 12 2555543333 222111 12456889999998 6666664432
Q ss_pred --CC----CeEEEEecccc--------eeEE-eC---CcCeeEEEECCCCCeEEEEecC----------CCCCeEEEEEc
Q 013871 217 --MP----ASATIFNKKCR--------PILE-LG---SGPYNTVRWNPKGKFLCLAGFG----------NLPGDMAFWDY 268 (434)
Q Consensus 217 --~~----~~v~l~d~~~~--------~~~~-~~---~~~~~~i~~SP~g~~l~~~~~~----------~~~g~i~iwd~ 268 (434)
.+ ..|..|+.... .+.. +. ...-+.|.|.|||.++++.+.. ...|.|.-+|.
T Consensus 97 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~ 176 (354)
T 3a9g_A 97 FAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDE 176 (354)
T ss_dssp ECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECT
T ss_pred cCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcC
Confidence 12 46777776432 1222 22 1234679999999866654321 12467777776
Q ss_pred cCC---------EEEEEeeCCCceEEEECC-CCCEEEEE
Q 013871 269 VDG---------KQLGTTRAECSVTSEWSP-DGRYFMTA 297 (434)
Q Consensus 269 ~~~---------~~i~~~~~~~~~~~~wsp-dg~~l~ta 297 (434)
+.. ..+......+...++|+| +|+.+++-
T Consensus 177 dG~~p~~npf~~~~i~a~G~rnp~Gla~d~~~g~l~v~d 215 (354)
T 3a9g_A 177 EGRPPADNPFPNSPIWSYGHRNPQGIDWHRASGVMVATE 215 (354)
T ss_dssp TSCCCTTSSSTTCCEEEECCSCCCEEEECTTTCCEEEEE
T ss_pred CCCCCCCCCCCCCcEEEEccCCcceEEEeCCCCCEEEEe
Confidence 532 123333334667799999 67655543
No 300
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=96.19 E-value=0.78 Score=46.63 Aligned_cols=157 Identities=8% Similarity=-0.023 Sum_probs=98.2
Q ss_pred eeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcce-eeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEE
Q 013871 144 TVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHE-GLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASAT 222 (434)
Q Consensus 144 ~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~-~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~ 222 (434)
...+.|++.+..|.+. |... ..|+.+...+... ..+....-.....+++.+.++.+.+ +....+.|.
T Consensus 42 ~~~ld~~~~~~~ly~s-----D~~~------~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~-~d~~~~~I~ 109 (619)
T 3s94_A 42 AAAVDFVFSHGLIYWS-----DVSE------EAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYW-TDSETNRIE 109 (619)
T ss_dssp EEEEEEETTTTEEEEE-----ETTT------TEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEE-EETTTTEEE
T ss_pred eEEEEEEeCCCEEEEE-----ECCC------CeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEE-EeCCCCEEE
Confidence 4567788877766542 1111 1355555555421 1111111246788999997777776 355667999
Q ss_pred EEecccceeEEe---CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC--EEEEEeeCCCceEEEECCCCCEEEEE
Q 013871 223 IFNKKCRPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG--KQLGTTRAECSVTSEWSPDGRYFMTA 297 (434)
Q Consensus 223 l~d~~~~~~~~~---~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~--~~i~~~~~~~~~~~~wspdg~~l~ta 297 (434)
+.++++.....+ .-..-+.|++.|.+.+|..+..+ ..+.|+..+++.. +.+.......+..+++++++..|..+
T Consensus 110 v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g-~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~a 188 (619)
T 3s94_A 110 VSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWG-EVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWA 188 (619)
T ss_dssp EEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECS-SSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEE
T ss_pred EEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccC-CCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEE
Confidence 999987654333 22334689999988878777765 2467888887643 33332233466779999998888888
Q ss_pred EcCCceeeCCcEEEEeecCce
Q 013871 298 TTAPRLQIDNGIKIFHHNGSL 318 (434)
Q Consensus 298 s~~prl~~D~~i~iw~~~g~~ 318 (434)
... .+.|...+++|..
T Consensus 189 D~~-----~~~I~~~~~dG~~ 204 (619)
T 3s94_A 189 DAK-----LNFIHKSNLDGTN 204 (619)
T ss_dssp ETT-----TCCEEEESSSCCE
T ss_pred eCC-----CCeEEEecCCCCc
Confidence 764 6778888888853
No 301
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=95.90 E-value=0.16 Score=47.79 Aligned_cols=98 Identities=13% Similarity=0.180 Sum_probs=60.1
Q ss_pred CeEEEEECcCCCEEEEEEccCCCeEEEEecccc--eeEEe-----CCcCeeEEEECCC---CCeEEEEecCCCC---CeE
Q 013871 197 PVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR--PILEL-----GSGPYNTVRWNPK---GKFLCLAGFGNLP---GDM 263 (434)
Q Consensus 197 ~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~--~~~~~-----~~~~~~~i~~SP~---g~~l~~~~~~~~~---g~i 263 (434)
.-..++|.|+|+.++ ..+.+.|.+++ .+. .+..+ .....+.|+|+|+ +..|.++.....+ +.|
T Consensus 32 ~P~~ia~~pdG~l~V---~e~~g~I~~i~-~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v 107 (352)
T 2ism_A 32 VPWALAFLPDGGMLI---AERPGRIRLFR-EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV 107 (352)
T ss_dssp CEEEEEECTTSCEEE---EETTTEEEEEE-TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred CceEEEEcCCCeEEE---EeCCCeEEEEE-CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence 346899999998554 34568999987 332 12222 2345688999998 5655555432111 478
Q ss_pred EEEEccCC-----EE-EEEee-----CCCceEEEECCCCCEEEEEE
Q 013871 264 AFWDYVDG-----KQ-LGTTR-----AECSVTSEWSPDGRYFMTAT 298 (434)
Q Consensus 264 ~iwd~~~~-----~~-i~~~~-----~~~~~~~~wspdg~~l~tas 298 (434)
..++.... +. +..+. .|....++|+|||..+++.+
T Consensus 108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G 153 (352)
T 2ism_A 108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG 153 (352)
T ss_dssp EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence 88887643 22 22233 13455699999997666543
No 302
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=95.76 E-value=0.65 Score=42.94 Aligned_cols=110 Identities=12% Similarity=0.080 Sum_probs=73.9
Q ss_pred eEEEEE---CcCCCEEEEEEc-----------cCCCeEEEEecc----cceeEEeC-----C----------cCeeEEEE
Q 013871 198 VHDVQW---SYSGSEFAVVYG-----------FMPASATIFNKK----CRPILELG-----S----------GPYNTVRW 244 (434)
Q Consensus 198 i~~v~w---spdg~~~av~~g-----------~~~~~v~l~d~~----~~~~~~~~-----~----------~~~~~i~~ 244 (434)
+..+.| .|+++.++++.. ..+..+..||+. ++.+.... . ...+.++.
T Consensus 65 ~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvav 144 (334)
T 2p9w_A 65 MSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQ 144 (334)
T ss_dssp EEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEE
T ss_pred eeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEE
Confidence 478999 688766664321 024678999988 44443321 1 24789999
Q ss_pred CCCCCeEEEEecCCCCCeEEEEEccCCEEEEEe-eCC------CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec
Q 013871 245 NPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTT-RAE------CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN 315 (434)
Q Consensus 245 SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~-~~~------~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~ 315 (434)
.++|+..++++++. +.|..+|.+......-. ... ...-++++|||..|++... ++.+..+|+.
T Consensus 145 D~~GnaYVt~s~~~--~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~------~g~L~~fD~~ 214 (334)
T 2p9w_A 145 DRDGNSYVAFALGM--PAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGG------PRALTAFDVS 214 (334)
T ss_dssp CTTSCEEEEEEESS--CEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESS------SSSEEEEECS
T ss_pred CCCCCEEEeCCCCC--CeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcC------CCeEEEEcCC
Confidence 99999888888661 47887777644222111 111 2446999999999999988 7777777765
No 303
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=95.76 E-value=0.21 Score=46.99 Aligned_cols=141 Identities=10% Similarity=0.090 Sum_probs=75.1
Q ss_pred eeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeee------ecCCCCCeEEEEECcC---CCEEEEEE
Q 013871 144 TVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLV------PLRKEGPVHDVQWSYS---GSEFAVVY 214 (434)
Q Consensus 144 ~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v------~l~~~~~i~~v~wspd---g~~~av~~ 214 (434)
-..|.|.|+|++|++. . ..+ .|+.++..+.....+ .....+....++|+|+ +..|.+.+
T Consensus 20 P~~i~~~pdG~~l~V~-e----~~G-------~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~ 87 (353)
T 2g8s_A 20 PWALAFLPDNHGMLIT-L----RGG-------ELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSY 87 (353)
T ss_dssp EEEEEECSTTCCEEEE-E----TTT-------EEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEE
T ss_pred cEEEEEcCCCCEEEEE-e----CCc-------eEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEE
Confidence 3578999999854442 2 122 255555433211111 1112456789999996 56666544
Q ss_pred ccC------CCeEEEEecccc--------eeEE-eCC-----cCeeEEEECCCCCeEEEEecC----------CCCCeEE
Q 013871 215 GFM------PASATIFNKKCR--------PILE-LGS-----GPYNTVRWNPKGKFLCLAGFG----------NLPGDMA 264 (434)
Q Consensus 215 g~~------~~~v~l~d~~~~--------~~~~-~~~-----~~~~~i~~SP~g~~l~~~~~~----------~~~g~i~ 264 (434)
... ...|..|+.... .+.. +.. ..-+.|.|.|||.++++.+.. ...|.|.
T Consensus 88 ~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ 167 (353)
T 2g8s_A 88 SEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLV 167 (353)
T ss_dssp EEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEE
T ss_pred eCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEE
Confidence 321 225666655321 1111 111 123579999999755554321 1246788
Q ss_pred EEEccCC--------------EEEEEeeCCCceEEEECC-CCCEEEE
Q 013871 265 FWDYVDG--------------KQLGTTRAECSVTSEWSP-DGRYFMT 296 (434)
Q Consensus 265 iwd~~~~--------------~~i~~~~~~~~~~~~wsp-dg~~l~t 296 (434)
-+|.+.. ..+......+...++|+| +|+.+++
T Consensus 168 ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~ 214 (353)
T 2g8s_A 168 RLTDQGEIPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLN 214 (353)
T ss_dssp EEETTSCCCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEE
T ss_pred EECCCCCCCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEE
Confidence 7876532 122223333566799999 5655544
No 304
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=95.69 E-value=2.5 Score=44.12 Aligned_cols=109 Identities=14% Similarity=0.142 Sum_probs=68.7
Q ss_pred CCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeEEe------CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEc
Q 013871 195 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL------GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDY 268 (434)
Q Consensus 195 ~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~~------~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~ 268 (434)
...|.++...++|...+ |...+-+..||.+...+..+ ....+.++...++|++.+.. ..|-|..||.
T Consensus 494 ~~~i~~i~~d~~g~lWi---gt~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T----~~Glv~~~d~ 566 (781)
T 3v9f_A 494 ENFVRSIAQDSEGRFWI---GTFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLAT----GEGLVCFPSA 566 (781)
T ss_dssp CSCEEEEEECTTCCEEE---EESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEE----TTEEEEESCT
T ss_pred cceeEEEEEcCCCCEEE---EEcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEE----CCCceEEECC
Confidence 35789999998887655 34334578888876655544 24567889999999865543 2244488888
Q ss_pred cCCEEEEEe--eC---CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCce
Q 013871 269 VDGKQLGTT--RA---ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL 318 (434)
Q Consensus 269 ~~~~~i~~~--~~---~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~ 318 (434)
++++...-. .+ ..+..+..+++|+..++ + +++|..++.....
T Consensus 567 ~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lW~~--t------~~Gl~~~~~~~~~ 613 (781)
T 3v9f_A 567 RNFDYQVFQRKEGLPNTHIRAISEDKNGNIWAS--T------NTGISCYITSKKC 613 (781)
T ss_dssp TTCCCEEECGGGTCSCCCCCEEEECSSSCEEEE--C------SSCEEEEETTTTE
T ss_pred CCCcEEEccccCCCCCceEEEEEECCCCCEEEE--c------CCceEEEECCCCc
Confidence 766432211 11 23445788888886554 3 4556666665443
No 305
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=95.67 E-value=0.52 Score=44.22 Aligned_cols=114 Identities=12% Similarity=0.110 Sum_probs=70.8
Q ss_pred CCeEEEEECc--CCC-EEEEE-EccCCCeEEEEecc--cce---eEEeC---CcCeeEEEECCCCCeEEEEec--C----
Q 013871 196 GPVHDVQWSY--SGS-EFAVV-YGFMPASATIFNKK--CRP---ILELG---SGPYNTVRWNPKGKFLCLAGF--G---- 257 (434)
Q Consensus 196 ~~i~~v~wsp--dg~-~~av~-~g~~~~~v~l~d~~--~~~---~~~~~---~~~~~~i~~SP~g~~l~~~~~--~---- 257 (434)
...+.+.+.+ +|. +|.|+ .+.....+.+|++. +.. +.++. -...|.+...++|++.++... .
T Consensus 112 f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~ 191 (355)
T 3sre_A 112 FNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYL 191 (355)
T ss_dssp CCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHH
T ss_pred eeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCccc
Confidence 4667777766 454 34333 33234578887663 222 22332 234689999999998876531 1
Q ss_pred --------CCCCeEEEEEccCCEEEEEeeCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec
Q 013871 258 --------NLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN 315 (434)
Q Consensus 258 --------~~~g~i~iwd~~~~~~i~~~~~~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~ 315 (434)
...|.|+.+|..+-+.+. -.-.....++|||||++|+.+.+. .+.|..|+++
T Consensus 192 ~~~e~~~~~~~g~vyr~d~~~~~~~~-~~l~~pNGia~spDg~~lYvadt~-----~~~I~~~~~~ 251 (355)
T 3sre_A 192 KSWEMHLGLAWSFVTYYSPNDVRVVA-EGFDFANGINISPDGKYVYIAELL-----AHKIHVYEKH 251 (355)
T ss_dssp HHHHHHTTCCCEEEEEECTTCCEEEE-EEESSEEEEEECTTSSEEEEEEGG-----GTEEEEEEEC
T ss_pred ccchhhccCCccEEEEEECCeEEEee-cCCcccCcceECCCCCEEEEEeCC-----CCeEEEEEEC
Confidence 124678777764333221 111345569999999999998874 6788999885
No 306
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=95.33 E-value=2.8 Score=42.47 Aligned_cols=136 Identities=8% Similarity=0.010 Sum_probs=86.4
Q ss_pred eEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeEEe---CCcCeeEEEECCCCCeEE
Q 013871 176 KLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL---GSGPYNTVRWNPKGKFLC 252 (434)
Q Consensus 176 ~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~~---~~~~~~~i~~SP~g~~l~ 252 (434)
.|+.+...+.....+....-+....+++.+.+..+.+ +....+.|.+.++.+.....+ .-..-+.|++.|...+|.
T Consensus 372 ~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~-tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~~iavdp~~G~ly 450 (619)
T 3s94_A 372 AIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYW-TDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMY 450 (619)
T ss_dssp EEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEE-EETTTTEEEEEETTSCSCEEEECTTCCSEEEEEEETTTTEEE
T ss_pred eEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEE-EeCCCCcEEEEeCCCCeEEEEEECCCCCeeeEEEEcCCCcEE
Confidence 3566666554222222111245568888876777766 345567999999876654443 223457899999866777
Q ss_pred EEecCCCCCeEEEEEccCC--EEEEEeeCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCce
Q 013871 253 LAGFGNLPGDMAFWDYVDG--KQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL 318 (434)
Q Consensus 253 ~~~~~~~~g~i~iwd~~~~--~~i~~~~~~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~ 318 (434)
.+..+. .+.|+..+++.. +.+..-.-..+..++.++++..|..+... .+.|...+++|..
T Consensus 451 ~tD~g~-~~~I~r~~~dG~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~-----~~~I~~~~~dG~~ 512 (619)
T 3s94_A 451 WTDWGE-IPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAK-----TDKIEVMNTDGTG 512 (619)
T ss_dssp EEECSS-SCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETT-----TTEEEEEESSSCC
T ss_pred EecCCC-CCEEEEEccCCCccEEEEeCCCCCCeeeEEcccCCEEEEEECC-----CCEEEEEecCCCc
Confidence 776542 467888877633 22322122366679999998888888763 4668888888764
No 307
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=95.25 E-value=1.1 Score=41.92 Aligned_cols=142 Identities=10% Similarity=0.070 Sum_probs=76.9
Q ss_pred eeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeee-ec-----CCCCCeEEEEECcC---CCEEEEEE
Q 013871 144 TVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLV-PL-----RKEGPVHDVQWSYS---GSEFAVVY 214 (434)
Q Consensus 144 ~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v-~l-----~~~~~i~~v~wspd---g~~~av~~ 214 (434)
-..|.|.|+|.. ++ +.. ..+ .|+.++..+.....+ .+ ...+....++++|+ +..|.+.+
T Consensus 34 P~~ia~~pdG~l-lV-ter---~~G-------~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~y 101 (347)
T 3das_A 34 PWGLAPLPGGDL-LV-SSR---DEA-------TITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYF 101 (347)
T ss_dssp EEEEEECTTSCE-EE-EET---TTC-------EEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEE
T ss_pred ceEEEEcCCCcE-EE-EEe---cCC-------EEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEE
Confidence 357899999974 33 211 122 255554332211111 11 22567899999995 45555543
Q ss_pred c-cCCCeEEEEeccc-----------ceeE-EeC---CcCeeEEEECCCCCeEEEEec-C---------CCCCeEEEEEc
Q 013871 215 G-FMPASATIFNKKC-----------RPIL-ELG---SGPYNTVRWNPKGKFLCLAGF-G---------NLPGDMAFWDY 268 (434)
Q Consensus 215 g-~~~~~v~l~d~~~-----------~~~~-~~~---~~~~~~i~~SP~g~~l~~~~~-~---------~~~g~i~iwd~ 268 (434)
. .....|.-|.... +.+. .+. ...-..|.|.|||.+.++.|. + ...|.|.-.+.
T Consensus 102 t~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~ 181 (347)
T 3das_A 102 TSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTP 181 (347)
T ss_dssp ECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECT
T ss_pred ecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeC
Confidence 3 2334666665432 1122 222 123356999999986666442 1 13467776666
Q ss_pred cCC---------EEEEEeeCCCceEEEECCCCCEEEEE
Q 013871 269 VDG---------KQLGTTRAECSVTSEWSPDGRYFMTA 297 (434)
Q Consensus 269 ~~~---------~~i~~~~~~~~~~~~wspdg~~l~ta 297 (434)
+.. ..+...-..+...++|+|+|+.+++=
T Consensus 182 dG~ip~~nPf~~~~i~a~G~RNp~Gla~dp~G~L~~~d 219 (347)
T 3das_A 182 DGEPAPGNPFPGSPVYSYGHRNVQGLAWDDKQRLFASE 219 (347)
T ss_dssp TSSBCTTCSSTTCCEEEBCCSBCCEEEECTTCCEEEEE
T ss_pred CCCccCCCCCCCCeEEeeCCCCcceEEECCCCCEEEEe
Confidence 522 12333333366779999998866553
No 308
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=95.10 E-value=1.2 Score=43.29 Aligned_cols=104 Identities=10% Similarity=0.102 Sum_probs=59.8
Q ss_pred CCCeEEEEECcC---CCEEEEEEccC-----------CCeEEEEeccc--------ceeEE-eC---CcCeeEEEECCCC
Q 013871 195 EGPVHDVQWSYS---GSEFAVVYGFM-----------PASATIFNKKC--------RPILE-LG---SGPYNTVRWNPKG 248 (434)
Q Consensus 195 ~~~i~~v~wspd---g~~~av~~g~~-----------~~~v~l~d~~~--------~~~~~-~~---~~~~~~i~~SP~g 248 (434)
++.+..|+|+|| +..|.+.+... ...|..|+... +.+.+ +. ....+.|.|.|||
T Consensus 76 ~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG 155 (454)
T 1cru_A 76 QNGLLGFAFHPDFKNNPYIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQ 155 (454)
T ss_dssp SCSEEEEEECTTTTTSCEEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTS
T ss_pred CCceeEEEECCCcCcCCEEEEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCC
Confidence 466789999996 66776655320 12555555421 12222 22 2345789999999
Q ss_pred CeEEEEecC-C----------------------------CCCeEEEEEccCC------------EEEEEeeCCCceEEEE
Q 013871 249 KFLCLAGFG-N----------------------------LPGDMAFWDYVDG------------KQLGTTRAECSVTSEW 287 (434)
Q Consensus 249 ~~l~~~~~~-~----------------------------~~g~i~iwd~~~~------------~~i~~~~~~~~~~~~w 287 (434)
.+.++.|.. + ..|.|.-+|.+.. ..+...-..++..++|
T Consensus 156 ~Lyv~~Gd~~~~~~~~~~~~~~~~~~p~~~~~~aq~~~~~~G~IlRi~~dG~ip~~Npf~~~~~~ei~a~G~RNp~gla~ 235 (454)
T 1cru_A 156 KIYYTIGDQGRNQLAYLFLPNQAQHTPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGHRNPQGLAF 235 (454)
T ss_dssp CEEEEECCTTTTSGGGTTSCCCTTCCCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBCCSEEEEEEE
T ss_pred eEEEEECCCCCCCccccccccccccccccccccccCCCCCCeeEEEEeCCCCCCCCCCCCCCCcceEEEECCCCcceEEE
Confidence 966654421 1 1366666665432 1223333336666999
Q ss_pred CCCCCEEEEEE
Q 013871 288 SPDGRYFMTAT 298 (434)
Q Consensus 288 spdg~~l~tas 298 (434)
+|+|+.+++-.
T Consensus 236 dp~G~L~~~d~ 246 (454)
T 1cru_A 236 TPNGKLLQSEQ 246 (454)
T ss_dssp CTTSCEEEEEE
T ss_pred CCCCCEEEEec
Confidence 99988666543
No 309
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=94.95 E-value=1.2 Score=41.65 Aligned_cols=137 Identities=10% Similarity=0.073 Sum_probs=76.1
Q ss_pred CeEEEEECcCCCEEEEEEccCCCeEEEEecccc---eeEEe------CCcCeeEEEECCC---CCeEEEE-ecCCCCCeE
Q 013871 197 PVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR---PILEL------GSGPYNTVRWNPK---GKFLCLA-GFGNLPGDM 263 (434)
Q Consensus 197 ~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~---~~~~~------~~~~~~~i~~SP~---g~~l~~~-~~~~~~g~i 263 (434)
.-..++|.|||+.|+ +....++|.+++.... .+..+ ..+....|+++|+ ..+|.+. +.. ....|
T Consensus 33 ~P~~ia~~pdG~llV--ter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~-~~~~v 109 (347)
T 3das_A 33 SPWGLAPLPGGDLLV--SSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSA-SDNRI 109 (347)
T ss_dssp SEEEEEECTTSCEEE--EETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECS-SSEEE
T ss_pred CceEEEEcCCCcEEE--EEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecC-CCCEE
Confidence 457899999998666 3333789999976422 22222 2455688999995 3444332 211 22356
Q ss_pred EEEEccC----------CEEEE-Ee---eCCCceEEEECCCCCEEEEEEcCCc------e-eeCCcEEEEeecCc-----
Q 013871 264 AFWDYVD----------GKQLG-TT---RAECSVTSEWSPDGRYFMTATTAPR------L-QIDNGIKIFHHNGS----- 317 (434)
Q Consensus 264 ~iwd~~~----------~~~i~-~~---~~~~~~~~~wspdg~~l~tas~~pr------l-~~D~~i~iw~~~g~----- 317 (434)
.-|.... .+.+. .+ ..|....+.|.|||..+++.+..-. + ..-+.|.-.+.+|.
T Consensus 110 ~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~n 189 (347)
T 3das_A 110 VRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGN 189 (347)
T ss_dssp EEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTC
T ss_pred EEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCC
Confidence 6665543 23332 23 2355566999999987776543110 0 01234444455555
Q ss_pred -----eeeeeecccceeeEEEcCC
Q 013871 318 -----LFFKKMFDKLFQAEWKPVS 336 (434)
Q Consensus 318 -----~~~~~~~~~~~~~~w~p~~ 336 (434)
.++..-....+.++|+|.+
T Consensus 190 Pf~~~~i~a~G~RNp~Gla~dp~G 213 (347)
T 3das_A 190 PFPGSPVYSYGHRNVQGLAWDDKQ 213 (347)
T ss_dssp SSTTCCEEEBCCSBCCEEEECTTC
T ss_pred CCCCCeEEeeCCCCcceEEECCCC
Confidence 2333333346778888854
No 310
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=94.93 E-value=2.4 Score=39.50 Aligned_cols=113 Identities=14% Similarity=0.202 Sum_probs=76.1
Q ss_pred CCeEEEEE--CcC-CCEEEEEEccCCCeEEEEecc--------cceeEEeC-CcCeeEEEECCCCCeEEEEecCCCCCeE
Q 013871 196 GPVHDVQW--SYS-GSEFAVVYGFMPASATIFNKK--------CRPILELG-SGPYNTVRWNPKGKFLCLAGFGNLPGDM 263 (434)
Q Consensus 196 ~~i~~v~w--spd-g~~~av~~g~~~~~v~l~d~~--------~~~~~~~~-~~~~~~i~~SP~g~~l~~~~~~~~~g~i 263 (434)
..++.++. +|. ++.++++.+ .++.+..|++. .+.+.+|. .+....|...+....|.++--+ -.|
T Consensus 128 ~~pyGlcly~~~~~g~~yafV~~-k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Lyv~eEd---~GI 203 (355)
T 3amr_A 128 NEVYGFTLYHSQKTGKYYAMVTG-KEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRLYIAEED---EAI 203 (355)
T ss_dssp SSCCCEEEEECTTTCCEEEEEEC-SSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEEEEEETT---TEE
T ss_pred CCeeEEEEEecCCCCcEEEEEEC-CCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCeEEEeccc---ceE
Confidence 45667888 774 555666544 45888888762 24455663 4567788888988888888743 358
Q ss_pred EEEEcc-----CCEEEEEeeCC----CceEEEE--CCCCC-EEEEEEcCCceeeCCcEEEEeecCc
Q 013871 264 AFWDYV-----DGKQLGTTRAE----CSVTSEW--SPDGR-YFMTATTAPRLQIDNGIKIFHHNGS 317 (434)
Q Consensus 264 ~iwd~~-----~~~~i~~~~~~----~~~~~~w--spdg~-~l~tas~~prl~~D~~i~iw~~~g~ 317 (434)
..+|.+ +++.+..+... .+-.++. .++|+ ||++++.. ++.+.||+..+.
T Consensus 204 w~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG-----~~s~~Vydr~~~ 264 (355)
T 3amr_A 204 WKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQG-----NSSYAIYDRQGK 264 (355)
T ss_dssp EEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGG-----GTEEEEEESSTT
T ss_pred EEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCC-----CCEEEEEECCCC
Confidence 888865 45677665432 3344666 67777 77777754 789999999643
No 311
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=94.92 E-value=3.4 Score=45.75 Aligned_cols=238 Identities=13% Similarity=0.121 Sum_probs=125.7
Q ss_pred CcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCCCceeeeeec
Q 013871 11 GLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPKGILYRLRV 90 (434)
Q Consensus 11 g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~~~~~~~~~ 90 (434)
.+|++.-+. ..+..+|.|-|+.++..+.+-+-.. + +.--.|..+.+|.-.+.+++||++....+.....+ .
T Consensus 35 Dkyicvre~--~~~~~~vvIidl~~~~~~~rrpi~A---d---sAIMnP~~~iiALrag~~lQiFnl~~k~klks~~~-~ 105 (1630)
T 1xi4_A 35 DKFICIREK--VGEQAQVVIIDMNDPSNPIRRPISA---D---SAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTM-T 105 (1630)
T ss_pred CceEEEEec--CCCCceEEEEECCCCCCcccccccc---h---hhccCCCcceEEEecCCeEEEeehHHhhhhccccc-C
Confidence 456655442 2234578999998876554322221 1 22346777888877778999999987554333333 2
Q ss_pred CCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCcee--ee--eecccceeEEEECCCCCeEEEEEEecccc
Q 013871 91 PGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLA--RR--SFFRCSTVQLNWNRGSTGLLAVAQSDVDK 166 (434)
Q Consensus 91 ~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~--~~--~~~~~~~~~~~ws~~G~~l~~~~~~~~d~ 166 (434)
+.|..-.|-.. ..+++.+. ..|.-|++... ..|+. .+ +.....++...-+++.++++++.-...+.
T Consensus 106 e~VvfWkWis~--~~l~lVT~------~aVyHW~~~~~--s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~ 175 (1630)
T 1xi4_A 106 DDVTFWKWISL--NTVALVTD------NAVYHWSMEGE--SQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQN 175 (1630)
T ss_pred CCceEEEecCC--CeeEEEcC------CeEEEeccCCC--CccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCC
Confidence 45666666543 34554433 35778888542 23322 11 12245677778899999988776543343
Q ss_pred cCceeecceeEEEEeeCCcceeeeecC-CCCCeEEEEE---CcCCCEEEEEEcc-CCCeEEEEecccc----eeE-----
Q 013871 167 TNQSYYGESKLNYLTTDGTHEGLVPLR-KEGPVHDVQW---SYSGSEFAVVYGF-MPASATIFNKKCR----PIL----- 232 (434)
Q Consensus 167 ~~~~~~g~~~l~~l~~~~~~~~~v~l~-~~~~i~~v~w---spdg~~~av~~g~-~~~~v~l~d~~~~----~~~----- 232 (434)
... |...||.++- .... .++ +-+...++.. .+....|++.... ..+++.|.++... +.+
T Consensus 176 ~v~---G~mQLyS~er--~~sQ--~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~ 248 (1630)
T 1xi4_A 176 RVV---GAMQLYSVDR--KVSQ--PIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAV 248 (1630)
T ss_pred ccc---ceeeeeeccc--ccch--hhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccc
Confidence 332 6556665531 1111 110 0000001111 1122344432221 1247777776321 111
Q ss_pred E--eC----CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEe
Q 013871 233 E--LG----SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTT 277 (434)
Q Consensus 233 ~--~~----~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~ 277 (434)
+ +. ...-..+..|+.-..+.+.+ ..|.|.++|+.++.++..-
T Consensus 249 ~~~~~~~~~~Dfpv~~~vs~k~g~iy~it---k~G~~~~~d~~t~~~i~~~ 296 (1630)
T 1xi4_A 249 DVFFPPEAQNDFPVAMQISEKHDVVFLIT---KYGYIHLYDLETGTCIYMN 296 (1630)
T ss_pred cccCCcccccCcceEEEeccccCEEEEEe---cCceEEEEecccchhhhhc
Confidence 1 11 12223566777666666665 5579999999999776543
No 312
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=94.22 E-value=3.5 Score=38.38 Aligned_cols=51 Identities=12% Similarity=0.242 Sum_probs=32.9
Q ss_pred CCCCeeeecCCCc-EEEEecCCeEEEEeCCCCCCceeeee------ecCCeeEEEEeCC
Q 013871 50 TTWPSIRFSSDEA-VACRMATNEIQFFDTTDFPKGILYRL------RVPGVAAFEVSKA 101 (434)
Q Consensus 50 ~~~~~~~~S~d~~-~la~~~~~~i~v~~~~~~~~~~~~~~------~~~~v~~~~~sp~ 101 (434)
..| .++|.|||+ ++++-..+.|++++...........+ ...+...++++|+
T Consensus 19 ~P~-~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pd 76 (353)
T 2g8s_A 19 HPW-ALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPD 76 (353)
T ss_dssp SEE-EEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTT
T ss_pred CcE-EEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCC
Confidence 345 899999999 88877778999998532110000111 1235788999995
No 313
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=94.14 E-value=4.2 Score=38.91 Aligned_cols=129 Identities=10% Similarity=0.136 Sum_probs=74.1
Q ss_pred CCcEEEEEcCCCcEEEEEeecC-cCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCCC----------ceeeeeec---
Q 013871 25 EKNVILWKTETGEAVYQLFQKN-MTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPK----------GILYRLRV--- 90 (434)
Q Consensus 25 d~~v~iWd~~~g~~~~~~~~~~-~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~----------~~~~~~~~--- 90 (434)
++.||.=++..+..-+.+.... ..-..+..+..||+|++||..++.+|+|-.++.... ......++
T Consensus 40 ~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~ 119 (452)
T 3pbp_A 40 DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEE 119 (452)
T ss_dssp TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGC
T ss_pred CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCCeEEEEEecCccccCcccccccccceeEEEcCCc
Confidence 3455555665443223333321 011245678999999999999999999999983211 01112222
Q ss_pred -----CCeeEEEEeCCCC--CeEEEEecCCCCCCceEEEEEcCCCCCCCce-eee--eecc-----cceeEEEECCCCCe
Q 013871 91 -----PGVAAFEVSKAPG--SHVAVFVPESKGSPASVQIYACGKDLQSQPL-ARR--SFFR-----CSTVQLNWNRGSTG 155 (434)
Q Consensus 91 -----~~v~~~~~sp~~~--~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i-~~~--~~~~-----~~~~~~~ws~~G~~ 155 (434)
..|..+.|+|-+. ..+.+.. .++.|++|++.... ..+. ..+ ..|. .++.+++|..+|=.
T Consensus 120 ~~~~~s~I~qVlWHPl~~~ds~LVVLt-----sD~~Ir~yDl~~s~-~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lT 193 (452)
T 3pbp_A 120 EVGPKSSIKKVLFHPKSYRDSCIVVLK-----EDDTITMFDILNSQ-EKPIVLNKPNNSFGLDARVNDITDLEFSKDGLT 193 (452)
T ss_dssp C--CCCCEEEEEECTTBGGGCEEEEEE-----TTSCEEEEETTCTT-SCCEEESCCCSEEESCSSCCCEEEEEECTTSSC
T ss_pred ccCCCCceeEEEeccccCCCCeEEEEe-----cCCEEEEEEcccCC-CCCcchhccccccCCCcccceEEEEEEcCCCcE
Confidence 3589999999753 3444433 34689999997521 3333 101 1122 45667777776655
Q ss_pred EEEE
Q 013871 156 LLAV 159 (434)
Q Consensus 156 l~~~ 159 (434)
|.++
T Consensus 194 LYvl 197 (452)
T 3pbp_A 194 LYCL 197 (452)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5443
No 314
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=93.94 E-value=1.9 Score=41.91 Aligned_cols=100 Identities=11% Similarity=0.152 Sum_probs=58.3
Q ss_pred CeEEEEECcCCCEEEEEEccCCC-eEEEEecc-c--ceeEEeC--------CcCeeEEEECCC---CCeEEEEecC----
Q 013871 197 PVHDVQWSYSGSEFAVVYGFMPA-SATIFNKK-C--RPILELG--------SGPYNTVRWNPK---GKFLCLAGFG---- 257 (434)
Q Consensus 197 ~i~~v~wspdg~~~av~~g~~~~-~v~l~d~~-~--~~~~~~~--------~~~~~~i~~SP~---g~~l~~~~~~---- 257 (434)
.-..++|.|+|+.|+ +.+.+ .|.+++.. + ..+..+. .+....|+|+|+ +.+|.++...
T Consensus 28 ~P~~~a~~pdG~l~V---~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~ 104 (454)
T 1cru_A 28 KPHALLWGPDNQIWL---TERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK 104 (454)
T ss_dssp SEEEEEECTTSCEEE---EETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred CceEEEEcCCCcEEE---EEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccC
Confidence 446999999998666 34454 78888753 2 2233332 344568999995 5544444321
Q ss_pred --CC----CCeEEEEEccCC-------EEEE-Eee---CCCceEEEECCCCCEEEEEEc
Q 013871 258 --NL----PGDMAFWDYVDG-------KQLG-TTR---AECSVTSEWSPDGRYFMTATT 299 (434)
Q Consensus 258 --~~----~g~i~iwd~~~~-------~~i~-~~~---~~~~~~~~wspdg~~l~tas~ 299 (434)
.. ...|.-++.... +.+. .+. .|....+.|.|||..+++.+.
T Consensus 105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred CCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 00 135666665421 2222 222 356667999999987777554
No 315
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=93.75 E-value=5.5 Score=44.16 Aligned_cols=219 Identities=10% Similarity=0.150 Sum_probs=123.4
Q ss_pred CeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEE
Q 013871 70 NEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNW 149 (434)
Q Consensus 70 ~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~w 149 (434)
++|.|.|+.+........+. ..+.-++|. .+.||+- ....++|+++.+ .+.+....+ ..+++-.+|
T Consensus 48 ~~vvIidl~~~~~~~rrpi~---AdsAIMnP~-~~iiALr------ag~~lQiFnl~~---k~klks~~~-~e~VvfWkW 113 (1630)
T 1xi4_A 48 AQVVIIDMNDPSNPIRRPIS---ADSAIMNPA-SKVIALK------AGKTLQIFNIEM---KSKMKAHTM-TDDVTFWKW 113 (1630)
T ss_pred ceEEEEECCCCCCccccccc---chhhccCCC-cceEEEe------cCCeEEEeehHH---hhhhccccc-CCCceEEEe
Confidence 48999999886542211222 234456776 5677763 246899999987 566665554 346677788
Q ss_pred CCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCC-----CCCeEEEEECcCCCEEEEEE-----ccCCC
Q 013871 150 NRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK-----EGPVHDVQWSYSGSEFAVVY-----GFMPA 219 (434)
Q Consensus 150 s~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~-----~~~i~~v~wspdg~~~av~~-----g~~~~ 219 (434)
-.+.+ |.+++. +.+|.+++.+.......++. ...|-...-+++.++++++. |...|
T Consensus 114 is~~~-l~lVT~-------------~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G 179 (1630)
T 1xi4_A 114 ISLNT-VALVTD-------------NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVG 179 (1630)
T ss_pred cCCCe-eEEEcC-------------CeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccc
Confidence 66544 444332 23677766553221111111 45677888899999998752 22456
Q ss_pred eEEEEecccceeEEe--CCcCeeEEEE---CCCCCeEEEEecCCCCCeEEEEEccCC---------EEEEEe-e----CC
Q 013871 220 SATIFNKKCRPILEL--GSGPYNTVRW---NPKGKFLCLAGFGNLPGDMAFWDYVDG---------KQLGTT-R----AE 280 (434)
Q Consensus 220 ~v~l~d~~~~~~~~~--~~~~~~~i~~---SP~g~~l~~~~~~~~~g~i~iwd~~~~---------~~i~~~-~----~~ 280 (434)
.+.+|..+.+....+ |.+...++.. .+....++.+......|++.|-++... +.+..+ . ..
T Consensus 180 ~mQLyS~er~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~D 259 (1630)
T 1xi4_A 180 AMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQND 259 (1630)
T ss_pred eeeeeecccccchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccC
Confidence 888998754332222 2222211111 122335555544322368888887432 111111 0 11
Q ss_pred CceEEEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceeeee
Q 013871 281 CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKK 322 (434)
Q Consensus 281 ~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~-~g~~~~~~ 322 (434)
-++.+..|+.-..+..-|. -|-|.++|+ +|.+++..
T Consensus 260 fpv~~~vs~k~g~iy~itk------~G~~~~~d~~t~~~i~~~ 296 (1630)
T 1xi4_A 260 FPVAMQISEKHDVVFLITK------YGYIHLYDLETGTCIYMN 296 (1630)
T ss_pred cceEEEeccccCEEEEEec------CceEEEEecccchhhhhc
Confidence 3344677777667777776 788999998 56666654
No 316
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=93.61 E-value=0.97 Score=44.74 Aligned_cols=117 Identities=14% Similarity=0.219 Sum_probs=78.6
Q ss_pred CeEEEEECcCCCEEEEEEccCCCeEEEEecccc------e--------eEE--eCCcCeeEEEECCCCCeEEEEecCCCC
Q 013871 197 PVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR------P--------ILE--LGSGPYNTVRWNPKGKFLCLAGFGNLP 260 (434)
Q Consensus 197 ~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~------~--------~~~--~~~~~~~~i~~SP~g~~l~~~~~~~~~ 260 (434)
.-|.+..+|||+++++ .|--..++.++|.+.. . ..+ ++.++ ...+|.++| ...+.-| ++
T Consensus 324 sPHGv~vsPDGkyi~v-~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGP-lHt~Fd~~G-~aYTtlf--id 398 (638)
T 3sbq_A 324 NPHGCNTSSDGKYFIA-AGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGP-LHTTFDGRG-NAYTTLF--ID 398 (638)
T ss_dssp SCCCEEECTTSCEEEE-ECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCE-EEEEECSSS-EEEEEET--TT
T ss_pred CCcceeeCCCCCEEEE-cCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcc-cEEEECCCC-ceEeeee--ec
Confidence 4478999999999987 5777789999997521 1 111 23444 457899999 4444443 56
Q ss_pred CeEEEEEccCC----------EEEEEeeCC-CceEEEE------CCCCCEEEEEEcCCceee-------CCcEEEEeecC
Q 013871 261 GDMAFWDYVDG----------KQLGTTRAE-CSVTSEW------SPDGRYFMTATTAPRLQI-------DNGIKIFHHNG 316 (434)
Q Consensus 261 g~i~iwd~~~~----------~~i~~~~~~-~~~~~~w------spdg~~l~tas~~prl~~-------D~~i~iw~~~g 316 (434)
..|.-|++... ..+..+.-| .+-++.- .|||++|++.....+-|. -..-+|.|++|
T Consensus 399 SqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~lnK~skdrfl~vGpl~pen~QlidIsG 478 (638)
T 3sbq_A 399 SQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALSKFSKDRFLPVGPLHPENDQLIDISG 478 (638)
T ss_dssp TEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEESCCTTSSCCCSSSCCEEEEEEECSS
T ss_pred ceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEecccccccCcCCCCCCCCcceeEecCC
Confidence 79999998742 456666555 3334433 799999999987554221 12468999999
Q ss_pred ce
Q 013871 317 SL 318 (434)
Q Consensus 317 ~~ 318 (434)
..
T Consensus 479 dk 480 (638)
T 3sbq_A 479 DE 480 (638)
T ss_dssp SS
T ss_pred Cc
Confidence 74
No 317
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=93.54 E-value=7.7 Score=39.95 Aligned_cols=254 Identities=9% Similarity=0.003 Sum_probs=124.4
Q ss_pred eEE-ecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEE-EEeecCcCCC------CCCeeeecCCCcEEEEe-------c
Q 013871 4 LLT-CLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVY-QLFQKNMTKT------TWPSIRFSSDEAVACRM-------A 68 (434)
Q Consensus 4 ~l~-fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~-~~~~~~~~~~------~~~~~~~S~d~~~la~~-------~ 68 (434)
.+. |||||++++..-...+++-..++++|+.+++.+. .|. .. .+. ....++|.+++.++++. .
T Consensus 133 g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~-~~-~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~~ 210 (711)
T 4hvt_A 133 GVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFE-PI-TNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEIT 210 (711)
T ss_dssp EEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSC-CB-CTTCCBCCEETCCEEEEETTEEEECCCCSTTCBC
T ss_pred ceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcc-cc-cccccccccccceeeEECCCEEEEEeCCCCCCcC
Confidence 345 9999999886544445555789999999998763 222 10 001 11235888666666642 1
Q ss_pred ----CCeEEEEeCCCCCCc--eeeeeecCCe-eEEEEeCCCCC---eEEEEecCCCCCCceEEEEEcCCCCCCCceeeee
Q 013871 69 ----TNEIQFFDTTDFPKG--ILYRLRVPGV-AAFEVSKAPGS---HVAVFVPESKGSPASVQIYACGKDLQSQPLARRS 138 (434)
Q Consensus 69 ----~~~i~v~~~~~~~~~--~~~~~~~~~v-~~~~~sp~~~~---~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~ 138 (434)
...|+.|...+.... .+.......+ .+...++++.. .+.+... .......+.+.+.... ..++..+.
T Consensus 211 ~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~~~--~~~~~~l~ 287 (711)
T 4hvt_A 211 SSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISAN-KDFYNYDNYILDTKYK--NLKLQKIN 287 (711)
T ss_dssp TTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEE-SSSSCEEEEEEECSSS--SCEEEECC
T ss_pred cCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEe-cccCceeEEEEcCCCC--CCcceEee
Confidence 137888887654221 1122222222 23344555443 2222221 1122234444444321 12222222
Q ss_pred ecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcc---------eeeeecCCCCCeEEEEECcCCCE
Q 013871 139 FFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH---------EGLVPLRKEGPVHDVQWSYSGSE 209 (434)
Q Consensus 139 ~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~---------~~~v~l~~~~~i~~v~wspdg~~ 209 (434)
.. ....+.++.+| .+++.+.++.+..+.. +....|..+++.... ...+.-.....+.++.|..+.
T Consensus 288 ~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-- 361 (711)
T 4hvt_A 288 MP--SDATLQGSFKE-YVFWLLRSDWKFKSHN-IKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKDR-- 361 (711)
T ss_dssp SC--TTCEEEEEETT-EEEEECSSCEEETTEE-ECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSSC--
T ss_pred cC--CcceEeeeECC-EEEEEECccccccccc-CCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECCE--
Confidence 11 12334455555 4444332221111111 122246666654321 112333334567789998763
Q ss_pred EEEEEccCCC--eEEEEecccce--eEE---eC-CcCeeEEEECCCCCe-EEEEecCCCCCeEEEEEcc
Q 013871 210 FAVVYGFMPA--SATIFNKKCRP--ILE---LG-SGPYNTVRWNPKGKF-LCLAGFGNLPGDMAFWDYV 269 (434)
Q Consensus 210 ~av~~g~~~~--~v~l~d~~~~~--~~~---~~-~~~~~~i~~SP~g~~-l~~~~~~~~~g~i~iwd~~ 269 (434)
+++. ...++ .+.++|+.... +.. +. .+.+..+..++++.. ++..+.-...+.++.+|+.
T Consensus 362 l~~~-~~~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 362 VFLA-TYDNVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp EEEE-EEETTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred EEEE-EEECCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 4432 23344 67778875332 222 33 355666777888764 4444444457899999987
No 318
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=93.14 E-value=7.9 Score=38.84 Aligned_cols=78 Identities=17% Similarity=0.205 Sum_probs=48.4
Q ss_pred CCeEEEEeccc-ceeEEeC-CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCC-c--eEEEECCCCC
Q 013871 218 PASATIFNKKC-RPILELG-SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAEC-S--VTSEWSPDGR 292 (434)
Q Consensus 218 ~~~v~l~d~~~-~~~~~~~-~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~-~--~~~~wspdg~ 292 (434)
.+.+.-||++. +.+-+.. ..+...-.....|.++++++ .+|.++.||.++++.+..++... + .-+.|..||+
T Consensus 465 ~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~---~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~ 541 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGT---GDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGE 541 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEEC---TTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred cceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEEC---CCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCE
Confidence 35788888864 4433331 12222111122466777776 66899999999999998887652 2 2277888998
Q ss_pred EEEEEE
Q 013871 293 YFMTAT 298 (434)
Q Consensus 293 ~l~tas 298 (434)
.++...
T Consensus 542 qYv~~~ 547 (582)
T 1flg_A 542 QYLGVT 547 (582)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 555443
No 319
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=92.61 E-value=7.4 Score=37.21 Aligned_cols=146 Identities=10% Similarity=0.108 Sum_probs=81.4
Q ss_pred cCCCcEEEEecCCeEEEEeCCCCCCceeeeee----cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCC-CC-
Q 013871 58 SSDEAVACRMATNEIQFFDTTDFPKGILYRLR----VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDL-QS- 131 (434)
Q Consensus 58 S~d~~~la~~~~~~i~v~~~~~~~~~~~~~~~----~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~-~~- 131 (434)
..+|.-++...+++||.-++.........++. ...+..+.+||+ +.++|++.+ ..|.|..+|... ..
T Consensus 29 ~~n~t~i~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSps-G~lLAl~g~------~~V~Vv~LP~~~~~~~ 101 (452)
T 3pbp_A 29 SQNGTRIVFIQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTS-GDLLCLFND------NEIFVMEVPWGYSNVE 101 (452)
T ss_dssp ETTTTEEEEEETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTT-SSEEEEECS------SEEEEEECCTTCSCCC
T ss_pred EcCCCEEEEEECCEEEEEECCCCCcceEEecCcccccCceeEEEECCC-CCEEEEecC------CeEEEEEecCccccCc
Confidence 34677777777788888777643322222222 335788999999 678887632 367777777311 01
Q ss_pred -----Cceeeeeec--------ccceeEEEECCCC---CeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecC--
Q 013871 132 -----QPLARRSFF--------RCSTVQLNWNRGS---TGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR-- 193 (434)
Q Consensus 132 -----~~i~~~~~~--------~~~~~~~~ws~~G---~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~-- 193 (434)
..+..+++. ...+.++.|+|-| ..|++++ .|...+.|. +....+....+.
T Consensus 102 ~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLt---sD~~Ir~yD---------l~~s~~~P~~L~k~ 169 (452)
T 3pbp_A 102 DVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLK---EDDTITMFD---------ILNSQEKPIVLNKP 169 (452)
T ss_dssp CHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEE---TTSCEEEEE---------TTCTTSCCEEESCC
T ss_pred ccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEe---cCCEEEEEE---------cccCCCCCcchhcc
Confidence 111212221 3458899999965 4566665 444444432 111111111111
Q ss_pred --------CCCCeEEEEECcCCCEEEEEEccCCCeEE
Q 013871 194 --------KEGPVHDVQWSYSGSEFAVVYGFMPASAT 222 (434)
Q Consensus 194 --------~~~~i~~v~wspdg~~~av~~g~~~~~v~ 222 (434)
....|.+++|.+++-.+.+.+...+|.|+
T Consensus 170 ~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIY 206 (452)
T 3pbp_A 170 NNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIF 206 (452)
T ss_dssp CSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEE
T ss_pred ccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEE
Confidence 12578899999987666665444455554
No 320
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=92.53 E-value=6.2 Score=36.12 Aligned_cols=96 Identities=9% Similarity=0.097 Sum_probs=54.1
Q ss_pred CCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-cceeEEe--C----CcCeeEEEECCCCCeEEEEecCCCCCeEEEEE
Q 013871 195 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL--G----SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWD 267 (434)
Q Consensus 195 ~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~-~~~~~~~--~----~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd 267 (434)
...++.+.+.|++..+++ + .++.+.+.+.. +..-..+ . ...+..+.|.|++++++++. +|.| ++.
T Consensus 204 ~~~~~~~~~~~~g~~~~~--~-~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~----~g~i-~~S 275 (327)
T 2xbg_A 204 SRRLHNMGFTPDGRLWMI--V-NGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG----AGAL-LCS 275 (327)
T ss_dssp SSCEEEEEECTTSCEEEE--E-TTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES----TTCE-EEE
T ss_pred CCccceeEECCCCCEEEE--e-CCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC----CCeE-EEe
Confidence 567889999999876653 2 34666665322 2211111 1 12467899999888877664 3456 444
Q ss_pred ccCCEEEEEee-----CCCceEEEECCCCCEEEEEEc
Q 013871 268 YVDGKQLGTTR-----AECSVTSEWSPDGRYFMTATT 299 (434)
Q Consensus 268 ~~~~~~i~~~~-----~~~~~~~~wspdg~~l~tas~ 299 (434)
.+.++.-.... ......+.|.++++.+ .++.
T Consensus 276 ~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~~~-~~G~ 311 (327)
T 2xbg_A 276 QDGGQTWQQDVDVKKVPSNFYKILFFSPDQGF-ILGQ 311 (327)
T ss_dssp SSTTSSCEECGGGTTSSSCCCEEEEEETTEEE-EECS
T ss_pred CCCCcccEEcCccCCCCCCeEEEEEECCCceE-EEcC
Confidence 44443222222 1244557887666644 4444
No 321
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=92.33 E-value=7.1 Score=36.32 Aligned_cols=197 Identities=12% Similarity=0.116 Sum_probs=102.0
Q ss_pred cEEEEecCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCC---CCCeE-EEEecCCCCCCceEEEEEcCCCCCCCceeee
Q 013871 62 AVACRMATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKA---PGSHV-AVFVPESKGSPASVQIYACGKDLQSQPLARR 137 (434)
Q Consensus 62 ~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~---~~~~i-a~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~ 137 (434)
.+|++...+.|.+||+.. . ....+....+..+.+-|+ ++..+ ..+..+......+|++|++... ..++...
T Consensus 42 ~ii~t~k~~gL~Vydl~G-~--~l~~~~~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~--~~~l~~i 116 (355)
T 3amr_A 42 KLITTNKKSGLVVYSLDG-K--MLHSYNTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGK--NGTLQSM 116 (355)
T ss_dssp EEEEEETTTEEEEEETTS-C--EEEEECCSCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTT--TCCEEEC
T ss_pred EEEEEcCCCCEEEEcCCC-c--EEEEccCCCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCC--CCceeec
Confidence 355555667999999943 2 223344445555555552 11221 2233332211468999988421 2234333
Q ss_pred ee---------cccceeEEEECCC-CCeEEEEEEecccccCceeecceeEEEEeeCC------cceeeeecCCCCCeEEE
Q 013871 138 SF---------FRCSTVQLNWNRG-STGLLAVAQSDVDKTNQSYYGESKLNYLTTDG------THEGLVPLRKEGPVHDV 201 (434)
Q Consensus 138 ~~---------~~~~~~~~~ws~~-G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~------~~~~~v~l~~~~~i~~v 201 (434)
.. ....-.++.-++. |..-+++. ++.+ ....|.+...+ .....+.+ .+.+..+
T Consensus 117 ~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~----~k~G-----~~~q~~l~~~~~g~~~~~lVR~f~l--gsq~Egc 185 (355)
T 3amr_A 117 TDPDHPIATAINEVYGFTLYHSQKTGKYYAMVT----GKEG-----EFEQYELKADKNGYISGKKVRAFKM--NSQTEGM 185 (355)
T ss_dssp SCTTSCEECCCSSCCCEEEEECTTTCCEEEEEE----CSSS-----EEEEEEEEECTTSCEEEEEEEEEEC--SSCEEEE
T ss_pred cccccCcCCCCCCeeEEEEEecCCCCcEEEEEE----CCCC-----eEEEEEEEeCCCCcccceEEEEecC--CCCcceE
Confidence 11 1111123333664 43223321 2222 22233343211 11122333 5678888
Q ss_pred EECcCCCEEEEEEccCCCeEEEEecc------cceeEEeCC----cCeeEEEE--CCCCC-eEEEEecCCCCCeEEEEEc
Q 013871 202 QWSYSGSEFAVVYGFMPASATIFNKK------CRPILELGS----GPYNTVRW--NPKGK-FLCLAGFGNLPGDMAFWDY 268 (434)
Q Consensus 202 ~wspdg~~~av~~g~~~~~v~l~d~~------~~~~~~~~~----~~~~~i~~--SP~g~-~l~~~~~~~~~g~i~iwd~ 268 (434)
+..+...++.+ +.++.-|+.||.+ ...+..+.. ..+..|++ .++|+ ||++++-++ ..+.+||+
T Consensus 186 vvDd~~g~Lyv--~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~--~s~~Vydr 261 (355)
T 3amr_A 186 AADDEYGRLYI--AEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGN--SSYAIYDR 261 (355)
T ss_dssp EEETTTTEEEE--EETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGG--TEEEEEES
T ss_pred EEcCCCCeEEE--ecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCC--CEEEEEEC
Confidence 88887777775 6667778888865 223333322 23444554 78887 777766554 58999999
Q ss_pred c-CCEEEEEee
Q 013871 269 V-DGKQLGTTR 278 (434)
Q Consensus 269 ~-~~~~i~~~~ 278 (434)
+ +.+.+..+.
T Consensus 262 ~~~~~~vg~f~ 272 (355)
T 3amr_A 262 QGKNKYVADFR 272 (355)
T ss_dssp STTCCEEEEEE
T ss_pred CCCCcEEEEEE
Confidence 7 677777774
No 322
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=91.96 E-value=11 Score=37.84 Aligned_cols=59 Identities=15% Similarity=0.187 Sum_probs=39.9
Q ss_pred CCeEEEEEccCCEEEEEeeCCC-ceEEEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceeeeeec
Q 013871 260 PGDMAFWDYVDGKQLGTTRAEC-SVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKKMF 324 (434)
Q Consensus 260 ~g~i~iwd~~~~~~i~~~~~~~-~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~-~g~~~~~~~~ 324 (434)
.|.|.-||+.+++.+....... ...-.....|..++.++. |+.++.||. +|+++.+...
T Consensus 452 ~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagg~vf~gt~------dg~l~A~D~~tG~~lW~~~l 512 (599)
T 1w6s_A 452 LGQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTL------DGYLKARDSDTGDLLWKFKI 512 (599)
T ss_dssp CEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECT------TSEEEEEETTTCCEEEEEEC
T ss_pred cCeEEEEECCCCCEEeEecCCCCccCcceEecCCEEEEECC------CCeEEEEECCCCCEEEEeeC
Confidence 4789999999999887775321 111112235566667777 999999997 6877765543
No 323
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=91.51 E-value=11 Score=36.65 Aligned_cols=96 Identities=13% Similarity=0.120 Sum_probs=53.3
Q ss_pred CCCeEEEEECcC---CCEEEEEEccCC-----------CeEEEEecc-----------cceeEEe----CCcCeeEEEEC
Q 013871 195 EGPVHDVQWSYS---GSEFAVVYGFMP-----------ASATIFNKK-----------CRPILEL----GSGPYNTVRWN 245 (434)
Q Consensus 195 ~~~i~~v~wspd---g~~~av~~g~~~-----------~~v~l~d~~-----------~~~~~~~----~~~~~~~i~~S 245 (434)
++....|+++|+ ...|.+.+.... ..|.-|.+. .+.+.++ .......|.|.
T Consensus 68 e~Gllgia~~P~f~~n~~lYv~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fg 147 (463)
T 2wg3_C 68 ERGLLSLAFHPNYKKNGKLYVSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFG 147 (463)
T ss_dssp CCSEEEEEECTTHHHHCEEEEEEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEEC
T ss_pred CCcceeeEeCCCCcCCCEEEEEEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeEC
Confidence 457789999996 345555443211 134445432 1223333 12334679999
Q ss_pred CCCCeEEEEecCC--------------CCCeEEEEEccCC---------------------EEEEEeeCCCceEEEECCC
Q 013871 246 PKGKFLCLAGFGN--------------LPGDMAFWDYVDG---------------------KQLGTTRAECSVTSEWSPD 290 (434)
Q Consensus 246 P~g~~l~~~~~~~--------------~~g~i~iwd~~~~---------------------~~i~~~~~~~~~~~~wspd 290 (434)
|||.+.++.|... ..|.|.=.|.+.. ..|...-..++..++|.|.
T Consensus 148 pDG~LYv~~Gd~~~~~~~~~~~q~~~~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~RNp~gla~dp~ 227 (463)
T 2wg3_C 148 PDGFLYIILGDGMITLDDMEEMDGLSDFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGLHDPGRCAVDRH 227 (463)
T ss_dssp TTSCEEEEECCTTCCHHHHHHCTTCCSCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECCSSCCBEEEESS
T ss_pred CCCcEEEEeCCCCCCCCccccccCcCCCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECCCCcceEEECCC
Confidence 9998666655321 2466666666541 1234433346667999997
No 324
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=90.99 E-value=14 Score=37.01 Aligned_cols=59 Identities=22% Similarity=0.282 Sum_probs=40.3
Q ss_pred CCeEEEEEccCCEEEEEeeCCCce-EEEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceeeeeec
Q 013871 260 PGDMAFWDYVDGKQLGTTRAECSV-TSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKKMF 324 (434)
Q Consensus 260 ~g~i~iwd~~~~~~i~~~~~~~~~-~~~wspdg~~l~tas~~prl~~D~~i~iw~~-~g~~~~~~~~ 324 (434)
.|.|.-||+.+++.+......... .-.....|..+++++. |+.++.||. +|+++.+...
T Consensus 465 ~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~~------dg~l~A~D~~tG~~lW~~~~ 525 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTG------DGYFKAFDAKSGKELWKFQT 525 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECT------TSEEEEEETTTCCEEEEEEC
T ss_pred cceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEECC------CCcEEEEECCCCCEEEEecC
Confidence 578999999999888776543211 1111224566777877 999999997 6887765543
No 325
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=89.28 E-value=2.9 Score=36.19 Aligned_cols=92 Identities=10% Similarity=0.107 Sum_probs=59.9
Q ss_pred CeEEEEECcCCCEEEEEEccCCCeEEEEeccc-------ceeEEeC---CcCeeEEEECCCCCeEEEEecCCCCCeEEEE
Q 013871 197 PVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-------RPILELG---SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFW 266 (434)
Q Consensus 197 ~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~-------~~~~~~~---~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iw 266 (434)
.+.+++|+|+|..++| ..+++.-.+... ..-..++ -....++.|.|+|.+.++ . +|.|+-+
T Consensus 42 ~~~~laf~P~G~LYaV----~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav-~----dG~iyr~ 112 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV----LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV-S----KDKLYKA 112 (236)
T ss_dssp TCSEEEECTTSCEEEE----ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE-E----TTEEEEE
T ss_pred cceeEEECCCccEEEE----eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe-C----CCEEEEe
Confidence 5679999999998776 245666666532 1112221 122478999999998887 3 2789888
Q ss_pred EccC---------CEEEEEeeCCCceEEEECCCCCEEEEE
Q 013871 267 DYVD---------GKQLGTTRAECSVTSEWSPDGRYFMTA 297 (434)
Q Consensus 267 d~~~---------~~~i~~~~~~~~~~~~wspdg~~l~ta 297 (434)
+.-+ ...|....-.....+.+.|+|...+..
T Consensus 113 ~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~ 152 (236)
T 1tl2_A 113 SPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH 152 (236)
T ss_dssp SCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE
T ss_pred CCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe
Confidence 7632 233333222355669999999988776
No 326
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=87.07 E-value=23 Score=34.30 Aligned_cols=100 Identities=12% Similarity=0.118 Sum_probs=57.8
Q ss_pred eEEEEECcCCC-EEEEEEccCCCeEEEEecccc----eeEEeC-----------CcCeeEEEECCC----CCeEEEEecC
Q 013871 198 VHDVQWSYSGS-EFAVVYGFMPASATIFNKKCR----PILELG-----------SGPYNTVRWNPK----GKFLCLAGFG 257 (434)
Q Consensus 198 i~~v~wspdg~-~~av~~g~~~~~v~l~d~~~~----~~~~~~-----------~~~~~~i~~SP~----g~~l~~~~~~ 257 (434)
-..|+|.|||. ++.| ..+.+.|++++..+. .+..+. .+....|+|+|+ +.+.++-...
T Consensus 16 P~~~a~~pdG~~rl~V--~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 16 PVGALHSGDGSQRLFI--LEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp EEEEECCSSSSCCEEE--EETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred ceEEEECCCCCeEEEE--EeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 36899999996 4444 356789999975432 222221 245677999996 4433332211
Q ss_pred CC-------C--CeEEEEEcc----------CCEEEEEee----CCCceEEEECCCCCEEEEEEc
Q 013871 258 NL-------P--GDMAFWDYV----------DGKQLGTTR----AECSVTSEWSPDGRYFMTATT 299 (434)
Q Consensus 258 ~~-------~--g~i~iwd~~----------~~~~i~~~~----~~~~~~~~wspdg~~l~tas~ 299 (434)
.. + ..|.-|.+. +.+.|..+. .|....+.|.|||..+++.+.
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd 158 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGD 158 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECC
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCC
Confidence 10 0 133334442 124443332 356667999999987777665
No 327
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=87.05 E-value=30 Score=35.59 Aligned_cols=240 Identities=9% Similarity=-0.029 Sum_probs=112.0
Q ss_pred ecCCCcEEEEe-c-C----CeEEEEeCCCCCCceeeeee-cC--------CeeEEEEeCCCCCeEEEE---ecC---CCC
Q 013871 57 FSSDEAVACRM-A-T----NEIQFFDTTDFPKGILYRLR-VP--------GVAAFEVSKAPGSHVAVF---VPE---SKG 115 (434)
Q Consensus 57 ~S~d~~~la~~-~-~----~~i~v~~~~~~~~~~~~~~~-~~--------~v~~~~~sp~~~~~ia~~---~~~---~~~ 115 (434)
++||+++++.+ + + .+|+++|+.+..... -.+. .. ....++|-.+ +. +.+. -++ ..+
T Consensus 137 ~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~-~~~~~~~k~~~~~~~~~~~~~W~d~-~~-~~~~~~~~~~~~~~~~ 213 (711)
T 4hvt_A 137 CFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVK-NGFEPITNSGKLLEGKFTYPTWINK-DT-IIFNLVLHKNEITSSL 213 (711)
T ss_dssp CSSSTTEEEEEEEETTCSEEEEEEEETTTTEECT-TCSCCBCTTCCBCCEETCCEEEEET-TE-EEECCCCSTTCBCTTS
T ss_pred cCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCC-CCcccccccccccccccceeeEECC-CE-EEEEeCCCCCCcCcCC
Confidence 89999988876 2 1 289999987642110 1111 00 0123477633 22 2221 111 234
Q ss_pred CCceEEEEEcCCCCCCCceeeeeec--ccc-eeEEEECCCCCeE---EEEEEecccccCceeecceeEEEEeeCCcceee
Q 013871 116 SPASVQIYACGKDLQSQPLARRSFF--RCS-TVQLNWNRGSTGL---LAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGL 189 (434)
Q Consensus 116 ~~~~v~i~~~~~~~~~~~i~~~~~~--~~~-~~~~~ws~~G~~l---~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~ 189 (434)
.+..|+.|.+-+. ..-...-|. ..+ .+...-+.++.+. +++... .+.. ...+|+++........
T Consensus 214 ~~~~v~~~~~Gt~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~------~~~~~~~~~~~~~~~~ 283 (711)
T 4hvt_A 214 YPNSLYIWKRGES---IEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISAN-KDFY------NYDNYILDTKYKNLKL 283 (711)
T ss_dssp SBCEEEEEETTSC---GGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEE-SSSS------CEEEEEEECSSSSCEE
T ss_pred CCCEEEEEECCCC---hHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEe-cccC------ceeEEEEcCCCCCCcc
Confidence 5678999998541 111111111 111 2334456677642 233211 1211 1346666654211122
Q ss_pred eecCCCCCeEEEEECcCCCEEEEEEcc---------CCCeEEEEecccc--------eeEE-e---CCcCeeEEEECCCC
Q 013871 190 VPLRKEGPVHDVQWSYSGSEFAVVYGF---------MPASATIFNKKCR--------PILE-L---GSGPYNTVRWNPKG 248 (434)
Q Consensus 190 v~l~~~~~i~~v~wspdg~~~av~~g~---------~~~~v~l~d~~~~--------~~~~-~---~~~~~~~i~~SP~g 248 (434)
+.+..... ..+.+++++..++. ... ..++|...|+... .... + ....+..+.|..+
T Consensus 284 ~~l~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~- 360 (711)
T 4hvt_A 284 QKINMPSD-ATLQGSFKEYVFWL-LRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD- 360 (711)
T ss_dssp EECCSCTT-CEEEEEETTEEEEE-CSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-
T ss_pred eEeecCCc-ceEeeeECCEEEEE-ECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-
Confidence 33322222 22345556644442 211 2447888887531 1222 2 2345667888875
Q ss_pred CeEEEEecCCCCCeEEEEEccCCE-EEEE---eeC-CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec
Q 013871 249 KFLCLAGFGNLPGDMAFWDYVDGK-QLGT---TRA-ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN 315 (434)
Q Consensus 249 ~~l~~~~~~~~~g~i~iwd~~~~~-~i~~---~~~-~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~ 315 (434)
.++++.. .+....|.++|+.+++ .+.. +.. ..+..+..++++..++...+++.. -..+..++..
T Consensus 361 ~l~~~~~-~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~--P~~~~~~d~~ 429 (711)
T 4hvt_A 361 RVFLATY-DNVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIV--PPTIYLWVKT 429 (711)
T ss_dssp CEEEEEE-ETTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSS--CCEEEEECTT
T ss_pred EEEEEEE-ECCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCC--CCEEEEEeCC
Confidence 3444333 3333568889887764 1222 222 233346777887655544332211 3455555554
No 328
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=83.90 E-value=25 Score=31.93 Aligned_cols=127 Identities=13% Similarity=0.215 Sum_probs=72.5
Q ss_pred CCCeEEEEECcCCCEEEEEEccCCCeEEE-Eeccc---ceeEEeCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccC
Q 013871 195 EGPVHDVQWSYSGSEFAVVYGFMPASATI-FNKKC---RPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD 270 (434)
Q Consensus 195 ~~~i~~v~wspdg~~~av~~g~~~~~v~l-~d~~~---~~~~~~~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~ 270 (434)
.+.++++++.|++..+++ +. .+.+.. .|..+ ..+.......+..+.++|+|++++++ .+|.+++.+.+.
T Consensus 162 ~~~~~~~~~~~~~~~~~~--g~-~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~~~~~~----~~G~~~~s~~D~ 234 (327)
T 2xbg_A 162 IGVMRNLNRSPSGEYVAV--SS-RGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGRLWMIV----NGGKIAFSDPDN 234 (327)
T ss_dssp CCCEEEEEECTTSCEEEE--ET-TSSEEEEECTTCSSCEEEECCSSSCEEEEEECTTSCEEEEE----TTTEEEEEETTE
T ss_pred CcceEEEEEcCCCcEEEE--EC-CCcEEEEeCCCCCceeECCCCCCCccceeEECCCCCEEEEe----CCceEEEecCCC
Confidence 567899999999877763 43 333333 34212 22222234567889999999877655 346777764333
Q ss_pred CEEEEEeeC------CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec-Cceeeeee-----cccceeeEEEcCC
Q 013871 271 GKQLGTTRA------ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLFFKKM-----FDKLFQAEWKPVS 336 (434)
Q Consensus 271 ~~~i~~~~~------~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~-g~~~~~~~-----~~~~~~~~w~p~~ 336 (434)
++.-..... .....+.+.|+++.++++. ++.+ .+..+ |+.-.... ...++.+.|.+..
T Consensus 235 G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-------~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~ 304 (327)
T 2xbg_A 235 SENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-------AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD 304 (327)
T ss_dssp EEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-------TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETT
T ss_pred CCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-------CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCC
Confidence 443332221 1355688999888766654 5555 34444 33222221 2457788886443
No 329
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=81.00 E-value=29 Score=30.68 Aligned_cols=79 Identities=8% Similarity=0.067 Sum_probs=42.5
Q ss_pred CeEEEEecccceeEEeC---Cc--CeeEEEECCCCCeEEEEecCCC--CCeEEEEEccCCEEEEE--eeCCCceEEEECC
Q 013871 219 ASATIFNKKCRPILELG---SG--PYNTVRWNPKGKFLCLAGFGNL--PGDMAFWDYVDGKQLGT--TRAECSVTSEWSP 289 (434)
Q Consensus 219 ~~v~l~d~~~~~~~~~~---~~--~~~~i~~SP~g~~l~~~~~~~~--~g~i~iwd~~~~~~i~~--~~~~~~~~~~wsp 289 (434)
..+.+||.....-..+. .. ....+.+ +++++++||.+.. ...+++||..+.+-... ............-
T Consensus 175 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~ 252 (301)
T 2vpj_A 175 NSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVL 252 (301)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE
T ss_pred ceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEE
Confidence 36889998766554442 11 1122333 6777788876432 35799999987743322 2222111112222
Q ss_pred CCCEEEEEEc
Q 013871 290 DGRYFMTATT 299 (434)
Q Consensus 290 dg~~l~tas~ 299 (434)
+++.++.++.
T Consensus 253 ~~~i~v~GG~ 262 (301)
T 2vpj_A 253 RGRLYAIAGY 262 (301)
T ss_dssp TTEEEEECCB
T ss_pred CCEEEEEcCc
Confidence 6676676665
No 330
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=80.93 E-value=2.5 Score=41.87 Aligned_cols=69 Identities=16% Similarity=0.191 Sum_probs=49.6
Q ss_pred eEEEECCCCCeEEEEecCCCCCeEEEEEccCC------E-------EEEEee-CCCceEEEECCCCCEEEEEEcCCceee
Q 013871 240 NTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG------K-------QLGTTR-AECSVTSEWSPDGRYFMTATTAPRLQI 305 (434)
Q Consensus 240 ~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~------~-------~i~~~~-~~~~~~~~wspdg~~l~tas~~prl~~ 305 (434)
..+..+|||++++++|. +..++.++|.++. + .+...+ +-...+.+|.++| ...|.-. +
T Consensus 326 HGv~vsPDGkyi~v~GK--LsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G-~aYTtlf-----i 397 (638)
T 3sbq_A 326 HGCNTSSDGKYFIAAGK--LSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRG-NAYTTLF-----I 397 (638)
T ss_dssp CCEEECTTSCEEEEECT--TSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSS-EEEEEET-----T
T ss_pred cceeeCCCCCEEEEcCC--CCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCC-ceEeeee-----e
Confidence 45889999999999874 5689999998742 1 133332 3378889999999 4333332 3
Q ss_pred CCcEEEEeecC
Q 013871 306 DNGIKIFHHNG 316 (434)
Q Consensus 306 D~~i~iw~~~g 316 (434)
|..|.-|++..
T Consensus 398 dSqvvkWni~~ 408 (638)
T 3sbq_A 398 DSQVVKWNMEE 408 (638)
T ss_dssp TTEEEEEEHHH
T ss_pred cceEEEEeccH
Confidence 99999999854
No 331
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=79.82 E-value=6.2 Score=42.20 Aligned_cols=38 Identities=8% Similarity=0.097 Sum_probs=33.0
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEee
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQ 44 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~ 44 (434)
|.++..+++..||.|.+ .|+++|||++.+|+++.+...
T Consensus 238 ~~~~~~~~~~~~lftl~-----~D~~LRiWsl~t~~~v~t~dL 275 (950)
T 4gq2_M 238 IISMIFLSTYNVLVMLS-----LDYKLKVLDLSTNQCVETIEL 275 (950)
T ss_dssp EEEEEEETTTTEEEEEE-----TTCEEEEEETTTTEEEEEEEC
T ss_pred EEEEeecCCCcEEEEEE-----CCCEEEEEECCCCCeEeeecc
Confidence 45677888999999999 899999999999999987654
No 332
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=77.91 E-value=12 Score=37.19 Aligned_cols=63 Identities=16% Similarity=0.184 Sum_probs=43.8
Q ss_pred eEEEECCCCCeEEEEecC--C-------CCCeEEEEEccCCEEEEEeeCC---CceEEEECCCCCEEEEEEcCCc
Q 013871 240 NTVRWNPKGKFLCLAGFG--N-------LPGDMAFWDYVDGKQLGTTRAE---CSVTSEWSPDGRYFMTATTAPR 302 (434)
Q Consensus 240 ~~i~~SP~g~~l~~~~~~--~-------~~g~i~iwd~~~~~~i~~~~~~---~~~~~~wspdg~~l~tas~~pr 302 (434)
+.|.|.++|.+.+....+ + ....|+.++..++++...+..+ .++-++||||++.|.++...|.
T Consensus 479 DnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~vQHPG 553 (592)
T 4a9v_A 479 DGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGIQHPG 553 (592)
T ss_dssp EEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEEESTT
T ss_pred CceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEEeCCC
Confidence 569999999977643211 0 1126788888788765555443 3456999999999999987654
No 333
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=76.41 E-value=40 Score=29.72 Aligned_cols=64 Identities=16% Similarity=0.215 Sum_probs=36.2
Q ss_pred CEEEEEEccCC-----CeEEEEecccceeEEeCC---cCeeEEEECCCCCeEEEEecCCCC--CeEEEEEccCCE
Q 013871 208 SEFAVVYGFMP-----ASATIFNKKCRPILELGS---GPYNTVRWNPKGKFLCLAGFGNLP--GDMAFWDYVDGK 272 (434)
Q Consensus 208 ~~~av~~g~~~-----~~v~l~d~~~~~~~~~~~---~~~~~i~~SP~g~~l~~~~~~~~~--g~i~iwd~~~~~ 272 (434)
..+.++ |..+ ..+.+||.+...-..+.. .........-+++++++||.+... ..|++||.++.+
T Consensus 207 ~~i~v~-GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 207 DHIYVV-GGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp TEEEEE-CCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred CEEEEE-eCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEECCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence 455554 4432 478999997665554421 111111222267788888765322 468889987763
No 334
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=70.95 E-value=15 Score=36.81 Aligned_cols=61 Identities=15% Similarity=0.168 Sum_probs=41.3
Q ss_pred EEEECCCCCeEEEEecCC---------CCCeEEEEEccCCEEEEEeeCC---CceEEEECCCCCEEEEEEcCC
Q 013871 241 TVRWNPKGKFLCLAGFGN---------LPGDMAFWDYVDGKQLGTTRAE---CSVTSEWSPDGRYFMTATTAP 301 (434)
Q Consensus 241 ~i~~SP~g~~l~~~~~~~---------~~g~i~iwd~~~~~~i~~~~~~---~~~~~~wspdg~~l~tas~~p 301 (434)
-|.|+|+|++++.-..+. .+..+.+.+..+++....+..+ .++-++|+|||+.|.+....|
T Consensus 480 NL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvniQHP 552 (592)
T 3zwu_A 480 GLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGIQHP 552 (592)
T ss_dssp EEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEEEST
T ss_pred ceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEEEECC
Confidence 489999999666543221 1134666677777665555544 444599999999999887755
No 335
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=69.13 E-value=21 Score=30.92 Aligned_cols=86 Identities=8% Similarity=0.048 Sum_probs=52.1
Q ss_pred CeeEEEECCCCCeEEEEecCCCCCeEEEEEccC---------CEEEEEeeCCCceEEEECCCCCEEEEEEcCCceeeCCc
Q 013871 238 PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD---------GKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNG 308 (434)
Q Consensus 238 ~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~---------~~~i~~~~~~~~~~~~wspdg~~l~tas~~prl~~D~~ 308 (434)
.+..++|+|+|.+.++ . +|+++-.+..+ ...|....-..-..+.|.|+|.+.++ + |+.
T Consensus 42 ~~~~laf~P~G~LYaV-~----~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~------dG~ 108 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV-L----NDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--S------KDK 108 (236)
T ss_dssp TCSEEEECTTSCEEEE-E----TTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--E------TTE
T ss_pred cceeEEECCCccEEEE-e----CCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--C------CCE
Confidence 5669999999998777 3 25777777644 13343322223345899999998888 5 776
Q ss_pred EEEEee--cC--------ceeeeeecccceeeEEEcCC
Q 013871 309 IKIFHH--NG--------SLFFKKMFDKLFQAEWKPVS 336 (434)
Q Consensus 309 i~iw~~--~g--------~~~~~~~~~~~~~~~w~p~~ 336 (434)
|.-++- ++ ..+-..-..++-.+.+.|++
T Consensus 109 iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G 146 (236)
T 1tl2_A 109 LYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNG 146 (236)
T ss_dssp EEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTS
T ss_pred EEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCc
Confidence 655554 21 23333333556666666654
No 336
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=67.75 E-value=5.8 Score=40.59 Aligned_cols=36 Identities=6% Similarity=0.019 Sum_probs=29.6
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEee
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQ 44 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~ 44 (434)
|.++.+ +.+||+|.+ .|+.+||||+.+++++.+...
T Consensus 224 Is~~~~--~~~fLftL~-----~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 224 ISCKLF--HERYLIVLT-----QNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEE--TTTEEEEEE-----TTCEEEEEETTTTEEEEEEET
T ss_pred EEEecc--CCcEEEEEE-----cCCeEEEEEcCCCceEEeecc
Confidence 444444 588999999 899999999999999887655
No 337
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=66.75 E-value=5.4 Score=43.65 Aligned_cols=39 Identities=8% Similarity=0.095 Sum_probs=32.8
Q ss_pred cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeec
Q 013871 2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQK 45 (434)
Q Consensus 2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~ 45 (434)
|.++..+++.+||.|.+ .|+++|||++.+|+++.+....
T Consensus 240 ~vs~~~~~~~~~lftL~-----~D~~LRiWsl~t~~~v~t~DL~ 278 (1139)
T 4fhn_B 240 IISMIFLSTYNVLVMLS-----LDYKLKVLDLSTNQCVETIELS 278 (1139)
T ss_dssp BSCCEEETTTTEEEEEB-----TTCEEEEEETTTTEEEEEEECC
T ss_pred eEEeeccCCccEEEEEe-----CCCEEEEEECCCCCeEEeechh
Confidence 34566778899999999 8999999999999999886543
No 338
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=62.72 E-value=12 Score=37.39 Aligned_cols=62 Identities=16% Similarity=0.072 Sum_probs=36.3
Q ss_pred eEEecCCCcEEEEEecCCCC-------CCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe
Q 013871 4 LLTCLRVGLIIQTFQKSSTP-------QEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM 67 (434)
Q Consensus 4 ~l~fSP~g~~L~t~~~~~~~-------~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~ 67 (434)
-|.|+|+|+.++.-...... ....+.+.+..+|+..+-+.... ...+.-+.|+||++.|...
T Consensus 480 NL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~--gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 480 GLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPI--GCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCT--TCEEEEEEECTTSSEEEEE
T ss_pred ceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCC--CccCcCeeECCCCCEEEEE
Confidence 47899999955542211000 11234555666777544333332 2667789999999876544
No 339
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=62.49 E-value=1.8e+02 Score=31.70 Aligned_cols=71 Identities=7% Similarity=-0.022 Sum_probs=41.5
Q ss_pred cceEEecCC------CcEEEEEecCCCCC-CCcEEEEEcCCCcEEEEEeecCc-CCCCCCeeeecCCCcEEEEe-cCCeE
Q 013871 2 LLLLTCLRV------GLIIQTFQKSSTPQ-EKNVILWKTETGEAVYQLFQKNM-TKTTWPSIRFSSDEAVACRM-ATNEI 72 (434)
Q Consensus 2 V~~l~fSP~------g~~L~t~~~~~~~~-d~~v~iWd~~~g~~~~~~~~~~~-~~~~~~~~~~S~d~~~la~~-~~~~i 72 (434)
|.|++++|. +.+++.+. . |++|+|+++.+.+.+........ ....+..+.+ ...-||..+ .+|.+
T Consensus 556 vscl~i~~~~~~~~~s~~~aVg~-----~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~-~~~~~L~igl~dG~l 629 (1158)
T 3ei3_A 556 VACLDITPLGDSNGLSPLCAIGL-----WTDISARILKLPSFELLHKEMLGGEIIPRSILMTTF-ESSHYLLCALGDGAL 629 (1158)
T ss_dssp EEEEECCCCSSSTTCCSEEEEEE-----TTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEE-TTEEEEEEEETTSEE
T ss_pred eEEEEeecCCCCcccccEEEEEE-----CCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEe-CCCcEEEEEeCCCeE
Confidence 678888864 46888877 5 88999999988777654433210 0011212233 223445444 56777
Q ss_pred EEEeCC
Q 013871 73 QFFDTT 78 (434)
Q Consensus 73 ~v~~~~ 78 (434)
..+.++
T Consensus 630 ~~~~~d 635 (1158)
T 3ei3_A 630 FYFGLN 635 (1158)
T ss_dssp EEEEEC
T ss_pred EEEEEc
Confidence 666654
No 340
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=62.32 E-value=40 Score=25.22 Aligned_cols=61 Identities=10% Similarity=0.066 Sum_probs=32.9
Q ss_pred CcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCC
Q 013871 11 GLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTD 79 (434)
Q Consensus 11 g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~ 79 (434)
|.|.+..+ .|+++.||+...+..+..-.... ..... .+.+..||.+++.-.++.+ +|....
T Consensus 24 g~~~L~~q-----~dGNLvL~~~~~~~~vWssnt~~-~~~~~-~l~l~~dGNLVl~d~~~~~-iW~S~t 84 (113)
T 3mez_B 24 RDYSLVMR-----DDCNLVLTKGSKTNIVWESGTSG-RGQHC-FMRLGHSGELDITDDRLNT-VFVSNT 84 (113)
T ss_dssp TTEEEEEC-----TTSCEEEEETTTTEEEEECCCTT-SCSSC-EEEECTTSCEEEECTTSCE-EEECSC
T ss_pred CCEEEEEc-----CCCEEEEEECCCCEEEEECCccc-CCcCE-EEEEeCCCcEEEECCCCCE-EEECCC
Confidence 55555555 67888888753345444321111 00112 4667777777776544443 676544
No 341
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=59.50 E-value=92 Score=27.36 Aligned_cols=109 Identities=10% Similarity=0.031 Sum_probs=56.0
Q ss_pred CEEEEEEccC-CCeEEEEecccceeEEeC---CcCeeEEEECCCCCeEEEEecCC-CCCeEEEEEccCCEE--EEEeeCC
Q 013871 208 SEFAVVYGFM-PASATIFNKKCRPILELG---SGPYNTVRWNPKGKFLCLAGFGN-LPGDMAFWDYVDGKQ--LGTTRAE 280 (434)
Q Consensus 208 ~~~av~~g~~-~~~v~l~d~~~~~~~~~~---~~~~~~i~~SP~g~~l~~~~~~~-~~g~i~iwd~~~~~~--i~~~~~~ 280 (434)
..+.++.|.. ...+.+||.....-..+. ..........-+++++++||.+. ....+.+||..+.+- +......
T Consensus 12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~ 91 (306)
T 3ii7_A 12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTP 91 (306)
T ss_dssp CEEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSC
T ss_pred ceEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCcc
Confidence 4455544432 347889998766554442 11111111223677777777541 235799999887743 3332222
Q ss_pred CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecC
Q 013871 281 CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG 316 (434)
Q Consensus 281 ~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g 316 (434)
........-+++.++.++....-..-+.+.+||...
T Consensus 92 r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~ 127 (306)
T 3ii7_A 92 RDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRT 127 (306)
T ss_dssp CBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTT
T ss_pred ccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCC
Confidence 111112223677777777521111235577777644
No 342
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=58.27 E-value=45 Score=35.55 Aligned_cols=72 Identities=8% Similarity=0.039 Sum_probs=45.5
Q ss_pred CeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC-------CceEEEECCC-CCEEEEEEcCCceeeCCcE
Q 013871 238 PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-------CSVTSEWSPD-GRYFMTATTAPRLQIDNGI 309 (434)
Q Consensus 238 ~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-------~~~~~~wspd-g~~l~tas~~prl~~D~~i 309 (434)
.+.++...++..++++-. .|+++++|++.+++++.+..-. ......-.|. +.++.+. ..|.- ++.+
T Consensus 237 ~~~~~~~~~~~~~lftl~---~D~~LRiWsl~t~~~v~t~dL~~~~~~~~~~~~~~~~~~~~~~i~v~-~s~~~--~g~F 310 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLS---LDYKLKVLDLSTNQCVETIELSQTILPLQSFPYLTSDHTTNSFIALY-YPDNS--HGSF 310 (950)
T ss_dssp CEEEEEEETTTTEEEEEE---TTCEEEEEETTTTEEEEEEECCCCCCCSCCCCCEEECSSSTTEEEEE-ECCSS--SCEE
T ss_pred eEEEEeecCCCcEEEEEE---CCCEEEEEECCCCCeEeeecccccCCccccccccccCCCcccEEEEE-EcCCC--CcEE
Confidence 457788888888998888 5569999999999988875421 1111333343 3333332 22221 5778
Q ss_pred EEEeec
Q 013871 310 KIFHHN 315 (434)
Q Consensus 310 ~iw~~~ 315 (434)
++|.+.
T Consensus 311 ~~~~~~ 316 (950)
T 4gq2_M 311 SIYKLN 316 (950)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 888763
No 343
>1b2p_A Protein (lectin); mannose-binding lectin, monocot, aglutinin, bluebell bulbs, carbohydrate interactions, sugar binding protein; 1.70A {Hyacinthoides hispanica} SCOP: b.78.1.1
Probab=55.52 E-value=46 Score=25.21 Aligned_cols=61 Identities=8% Similarity=0.117 Sum_probs=31.0
Q ss_pred cCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCC
Q 013871 8 LRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTT 78 (434)
Q Consensus 8 SP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~ 78 (434)
||+|.|-+... .|+++.+++- +..+..-.... ...-..+.+..||++++.-.++. .+|...
T Consensus 27 S~~g~~~L~~~-----~dgnlvly~~--~~~vW~sn~~~--~~~~~~l~l~~dGNLVl~d~~~~-~lW~S~ 87 (119)
T 1b2p_A 27 FGTHVYRFIMQ-----TDCNLVLYDN--NNPIWATNTGG--LGNGCRAVLQPDGVLVVITNENV-TVWQSP 87 (119)
T ss_dssp ETTEEEEEEEC-----TTSCEEEEET--TEEEEECCCTT--SCSSCEEEECTTSCEEEECTTCC-EEEECS
T ss_pred CCCCCEEEEEe-----cCCCEEEEEC--CEEEEeCCCcc--CCCceEEEEccCCEEEEEeCCCc-EEEcCC
Confidence 77777777666 5777777763 44443321110 01111355666666665543333 355543
No 344
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=53.63 E-value=1.2e+02 Score=26.77 Aligned_cols=52 Identities=10% Similarity=0.184 Sum_probs=31.8
Q ss_pred CeEEEEecccceeEEeCC-----cCeeEEEECCCCCeEEEEecCCC--CCeEEEEEccCCE
Q 013871 219 ASATIFNKKCRPILELGS-----GPYNTVRWNPKGKFLCLAGFGNL--PGDMAFWDYVDGK 272 (434)
Q Consensus 219 ~~v~l~d~~~~~~~~~~~-----~~~~~i~~SP~g~~l~~~~~~~~--~g~i~iwd~~~~~ 272 (434)
..+.+||++...-..+.. .....+.+ +++++++||.+.. ...+++||.++.+
T Consensus 231 ~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 289 (308)
T 1zgk_A 231 NSVERYDVETETWTFVAPMKHRRSALGITVH--QGRIYVLGGYDGHTFLDSVECYDPDTDT 289 (308)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred ceEEEEeCCCCcEEECCCCCCCccceEEEEE--CCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence 478999997765554421 11122222 6778888875431 3578899988764
No 345
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=49.71 E-value=69 Score=29.01 Aligned_cols=59 Identities=3% Similarity=-0.018 Sum_probs=29.9
Q ss_pred eEEEEEccCC--EEEEEeeCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceee
Q 013871 262 DMAFWDYVDG--KQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFF 320 (434)
Q Consensus 262 ~i~iwd~~~~--~~i~~~~~~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~~~ 320 (434)
.+++||..+. +.+..+........+..-+++.++.|+....-..-+.+.+.+++++.+.
T Consensus 286 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~ 346 (357)
T 2uvk_A 286 STDIHLWHNGKWDKSGELSQGRAYGVSLPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVT 346 (357)
T ss_dssp CCEEEECC---CEEEEECSSCCBSSEEEEETTEEEEEEEECGGGCEEEEEEEEEC-CCSCE
T ss_pred eEEEEecCCCceeeCCCCCCCcccceeEEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeE
Confidence 5789998765 4555444332222333457888888886321111134555566555433
No 346
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=46.82 E-value=34 Score=34.05 Aligned_cols=62 Identities=16% Similarity=0.051 Sum_probs=37.1
Q ss_pred eEEecCCCcEEEEEecCCC-------CCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe
Q 013871 4 LLTCLRVGLIIQTFQKSST-------PQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM 67 (434)
Q Consensus 4 ~l~fSP~g~~L~t~~~~~~-------~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~ 67 (434)
.|.|+++|.+.+.-....+ .....|..++..+|+..+-+..... ....-++||||++.|...
T Consensus 480 nL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~--aEpnGiafSPD~ktLfV~ 548 (592)
T 4a9v_A 480 GLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIG--CEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTT--CEEEEEEECTTSSEEEEE
T ss_pred ceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCC--ccccCCEECCCCCEEEEE
Confidence 4889999987773332111 0122566667677875433322211 345579999999987765
No 347
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=46.46 E-value=3.2e+02 Score=29.74 Aligned_cols=234 Identities=10% Similarity=0.092 Sum_probs=115.3
Q ss_pred EEEEecCCeEEEEeCCCCCCceeeeeecC-CeeEEEEeCCCCCeEEEE-ecC---C-C----------------------
Q 013871 63 VACRMATNEIQFFDTTDFPKGILYRLRVP-GVAAFEVSKAPGSHVAVF-VPE---S-K---------------------- 114 (434)
Q Consensus 63 ~la~~~~~~i~v~~~~~~~~~~~~~~~~~-~v~~~~~sp~~~~~ia~~-~~~---~-~---------------------- 114 (434)
-++...+++++|..++........++.+. .++.++++|....++.+. ..+ . +
T Consensus 708 g~v~~~~~~LrI~~i~~~~~~~~~~ipL~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 (1158)
T 3ei3_A 708 SLALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSK 787 (1158)
T ss_dssp EEEEECSSCEEEEEECCSSSEEEEEEECSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCC
T ss_pred cEEEEcCCceEEEEecccCCeeEEEEeCCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccc
Confidence 34455667899999877665555555544 477888888743322111 110 0 0
Q ss_pred -------------C---CCceEEEEEcCCCCCCCceeeeeecccc----eeEEEECCC-CCeEEEEEEecccccCceeec
Q 013871 115 -------------G---SPASVQIYACGKDLQSQPLARRSFFRCS----TVQLNWNRG-STGLLAVAQSDVDKTNQSYYG 173 (434)
Q Consensus 115 -------------~---~~~~v~i~~~~~~~~~~~i~~~~~~~~~----~~~~~ws~~-G~~l~~~~~~~~d~~~~~~~g 173 (434)
+ ..+.+++.+-.+ .+.+....+-..+ .+.+.+..+ ..++++.+..-.......-.|
T Consensus 788 ~~~~~~~~~~~~~g~~~~~s~i~lidp~t---~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~G 864 (1158)
T 3ei3_A 788 LFSSSTAPHETSFGEEVEVHNLLIIDQHT---FEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQG 864 (1158)
T ss_dssp CC----------CCCEEEEEEEEEEETTT---CCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCE
T ss_pred cccccccCchhhcCCceeeEEEEEEeCCC---CeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCce
Confidence 0 013456666544 3344433333222 122334333 355655554311100000112
Q ss_pred ceeEEEEeeCCcceeee-ecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccce-eE-Ee-CCcCeeEEEECCCCC
Q 013871 174 ESKLNYLTTDGTHEGLV-PLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP-IL-EL-GSGPYNTVRWNPKGK 249 (434)
Q Consensus 174 ~~~l~~l~~~~~~~~~v-~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~-~~-~~-~~~~~~~i~~SP~g~ 249 (434)
.|+.+++.+..-..+ ..+.+|++++++-- +| +|++.. ..++.+|++..+. +. +. .-..+..+...-.|.
T Consensus 865 --ri~vf~v~~~kL~lv~~~~v~g~v~al~~~-~g-~Lla~i---g~~l~vy~l~~~~~L~~~~~~~~~i~~~~l~~~~~ 937 (1158)
T 3ei3_A 865 --RIVVFQYSDGKLQTVAEKEVKGAVYSMVEF-NG-KLLASI---NSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGD 937 (1158)
T ss_dssp --EEEEEEEETTEEEEEEEEEESSCEEEEEEE-TT-EEEEEE---TTEEEEEEECTTSCEEEEEEECCCSCEEEEEEETT
T ss_pred --EEEEEEEECCEEEEEEEEEcCCcCEEEeee-CC-EEEEEc---CCEEEEEECCCCceEEEEeeccccEEEEEEeccCC
Confidence 244444432211111 12237899988743 45 455322 3599999986432 22 11 011122223333578
Q ss_pred eEEEEecCCCCCeEEE--EEccCCEEEEEeeC---CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecC
Q 013871 250 FLCLAGFGNLPGDMAF--WDYVDGKQLGTTRA---ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG 316 (434)
Q Consensus 250 ~l~~~~~~~~~g~i~i--wd~~~~~~i~~~~~---~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g 316 (434)
++++|.. ...|.+ |+....+.+..... .+++.+++--+ ..++.+.. ++.+.+..+..
T Consensus 938 ~I~vgD~---~~Sv~~~~y~~~~~~L~~~a~D~~~~~vta~~~ld~-~t~l~aD~------~gNl~vl~~~~ 999 (1158)
T 3ei3_A 938 FILVGDL---MRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDD-DNFLGAEN------AFNLFVCQKDS 999 (1158)
T ss_dssp EEEEEES---SBCEEEEEEETTTTEEEEEEECCSCBCEEEEEEEET-TEEEEEET------TSEEEEEEECT
T ss_pred EEEEEEh---hheEEEEEEEcCCCeEEEEEeecccccEEEEEEEcc-CcEEEEcC------CCcEEEEecCC
Confidence 8888873 334555 55555554443333 25666666544 36666776 88899988843
No 348
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=41.41 E-value=1.3e+02 Score=26.56 Aligned_cols=110 Identities=15% Similarity=0.060 Sum_probs=0.0
Q ss_pred CCEEEEEEcc-----CCCeEEEEecccceeEEe---CCcCeeEEEECCCCCeEEEEecCCCC--CeEEEEEccCC--EEE
Q 013871 207 GSEFAVVYGF-----MPASATIFNKKCRPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLP--GDMAFWDYVDG--KQL 274 (434)
Q Consensus 207 g~~~av~~g~-----~~~~v~l~d~~~~~~~~~---~~~~~~~i~~SP~g~~l~~~~~~~~~--g~i~iwd~~~~--~~i 274 (434)
+..+.++.|. .-..+.+||...+.-..+ ........+..-+++++++||.+... ..+++||..+. +.+
T Consensus 158 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~ 237 (318)
T 2woz_A 158 NGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVM 237 (318)
T ss_dssp TTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEEEEETTEEEEEEEEEETTTCCEEEC
T ss_pred CCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEECCEEEEEcCcCCCCccceEEEEECCCCeEEEC
Q ss_pred EEeeCCCceEEEECCCCCEEEEEEcCCceeeC--------------CcEEEEeecCceeeee
Q 013871 275 GTTRAECSVTSEWSPDGRYFMTATTAPRLQID--------------NGIKIFHHNGSLFFKK 322 (434)
Q Consensus 275 ~~~~~~~~~~~~wspdg~~l~tas~~prl~~D--------------~~i~iw~~~g~~~~~~ 322 (434)
..............-+++.++.++. + +.+.+||.....-...
T Consensus 238 ~~~p~~r~~~~~~~~~~~i~v~GG~------~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 293 (318)
T 2woz_A 238 TEFPQERSSISLVSLAGSLYAIGGF------AMIQLESKEFAPTEVNDIWKYEDDKKEWAGM 293 (318)
T ss_dssp CCCSSCCBSCEEEEETTEEEEECCB------CCBC----CCBCCBCCCEEEEETTTTEEEEE
T ss_pred CCCCCcccceEEEEECCEEEEECCe------eccCCCCceeccceeeeEEEEeCCCCEehhh
No 349
>3kxs_F Capsid protein; core protein, hepadnavirus, four helix bundle, icosahedral, dimer, DNA-binding, HOST cytoplasm; 2.25A {Hepatitis b virus subtype adyw} SCOP: a.62.1.1 PDB: 2g33_C 2g34_C 1qgt_C
Probab=39.45 E-value=9.9 Score=28.68 Aligned_cols=10 Identities=60% Similarity=1.056 Sum_probs=7.9
Q ss_pred CCCccCCCCc
Q 013871 379 KPAAYRPPHA 388 (434)
Q Consensus 379 ~~~~y~pp~~ 388 (434)
-|.+||||.|
T Consensus 128 tppayrppna 137 (143)
T 3kxs_F 128 TPPAARPPNA 137 (143)
T ss_dssp SCTTTSCSCC
T ss_pred CCcccCCCCC
Confidence 4568999986
No 350
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=38.60 E-value=90 Score=28.19 Aligned_cols=93 Identities=10% Similarity=0.148 Sum_probs=48.5
Q ss_pred CCEEEEEEccCCCeEEEEeccc--ceeEEe---CCcCe-eEEEECCCCCeEEEEec-C--C----CCCeEEEEEccCCEE
Q 013871 207 GSEFAVVYGFMPASATIFNKKC--RPILEL---GSGPY-NTVRWNPKGKFLCLAGF-G--N----LPGDMAFWDYVDGKQ 273 (434)
Q Consensus 207 g~~~av~~g~~~~~v~l~d~~~--~~~~~~---~~~~~-~~i~~SP~g~~l~~~~~-~--~----~~g~i~iwd~~~~~~ 273 (434)
+..+.++.|.....+.+||... ..-..+ ...++ ...+..-+++++++||. . + .-..+++||..+.+-
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W 98 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSW 98 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEETTEEEEECCEEECTTSCEEECCCEEEEETTTTEE
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEECCEEEEEcCCCCCCCccceeeccEEEEeCCCCcE
Confidence 3455554555556888998852 333333 21111 11111226778888876 2 1 124799999987743
Q ss_pred EE--Eee-CCCceEEEECCCCCEEEEEEc
Q 013871 274 LG--TTR-AECSVTSEWSPDGRYFMTATT 299 (434)
Q Consensus 274 i~--~~~-~~~~~~~~wspdg~~l~tas~ 299 (434)
.. ... .......+...+++.++.++.
T Consensus 99 ~~~~~~~p~~r~~~~~~~~~~~iyv~GG~ 127 (357)
T 2uvk_A 99 VKLMSHAPMGMAGHVTFVHNGKAYVTGGV 127 (357)
T ss_dssp EECSCCCSSCCSSEEEEEETTEEEEEECC
T ss_pred EECCCCCCcccccceEEEECCEEEEEeCc
Confidence 32 222 111122223367788788775
No 351
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=38.05 E-value=3.3e+02 Score=27.49 Aligned_cols=98 Identities=18% Similarity=0.187 Sum_probs=55.2
Q ss_pred eEEEEecccceeEEeCC---c-CeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEee-----CC--CceEEEEC
Q 013871 220 SATIFNKKCRPILELGS---G-PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTR-----AE--CSVTSEWS 288 (434)
Q Consensus 220 ~v~l~d~~~~~~~~~~~---~-~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~-----~~--~~~~~~ws 288 (434)
.+.+||...+.-..+.. . ...+++.-.+|+++++||.+... .+++||..+.+-..... .. ....+.+.
T Consensus 469 dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~-~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~ 547 (695)
T 2zwa_A 469 DNWIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGP-AMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFD 547 (695)
T ss_dssp CCEEEETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSC-SEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEE
T ss_pred cEEEEeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCC-CEEEEECCCCceEEccCCCCCCCcccceeEEEEe
Confidence 68889987655444321 1 11233333488999998876433 89999998875332221 11 12225555
Q ss_pred CC-CCEEEEEEcCCc-eeeCCcEEEEeecCce
Q 013871 289 PD-GRYFMTATTAPR-LQIDNGIKIFHHNGSL 318 (434)
Q Consensus 289 pd-g~~l~tas~~pr-l~~D~~i~iw~~~g~~ 318 (434)
.+ ++.++.|+.... -..-+.+.+||.....
T Consensus 548 ~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~ 579 (695)
T 2zwa_A 548 PVSKQGIILGGGFMDQTTVSDKAIIFKYDAEN 579 (695)
T ss_dssp TTTTEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred CCCCEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence 55 677777765211 0123567788875443
No 352
>4h3o_A Lectin; cadmium, plant protein; 2.17A {Allium sativum} PDB: 1kj1_A* 1bwu_P* 1kj1_D* 1bwu_Q* 1bwu_A* 1bwu_D*
Probab=36.05 E-value=1.3e+02 Score=22.05 Aligned_cols=60 Identities=12% Similarity=0.129 Sum_probs=31.7
Q ss_pred CcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCC
Q 013871 11 GLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTD 79 (434)
Q Consensus 11 g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~ 79 (434)
|.|-+..+ .|+++.+|+- +..+..-.....-.... .+.+..||.+++.-.++. .||....
T Consensus 19 g~y~l~~q-----~DgNLvly~~--~~~vW~ant~~~~~~~~-~L~l~~dGnLvL~d~~~~-~vWss~t 78 (105)
T 4h3o_A 19 EPYHFIMQ-----DDCNLVLYDH--STSTWASNTEIGGKSGC-SAVLQSDGNFVVYDSSGR-SLWASHS 78 (105)
T ss_dssp TTEEEEEC-----TTSCEEEEET--TEEEEECCCCCTTCCSC-EEEECTTSCEEEECTTCC-EEEECCC
T ss_pred CCEEEEEC-----CCCeEEEEEC--CEEEEEecCCCCCCccE-EEEEeCCccEEEECCCcE-EEEEecC
Confidence 55555555 7888888873 33433211111000112 467778888777654443 3676543
No 353
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=33.69 E-value=2.4e+02 Score=24.66 Aligned_cols=151 Identities=10% Similarity=-0.029 Sum_probs=0.0
Q ss_pred eecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEc----------cCCCeEEEEecccceeEEe---CCc
Q 013871 171 YYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYG----------FMPASATIFNKKCRPILEL---GSG 237 (434)
Q Consensus 171 ~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g----------~~~~~v~l~d~~~~~~~~~---~~~ 237 (434)
.+|...++.++.....=...++....+....+..-.+..+.++.| .....+..||.....-..+ ...
T Consensus 9 ~~GG~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~ 88 (315)
T 4asc_A 9 MISEEGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSP 88 (315)
T ss_dssp EEETTEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSC
T ss_pred EEcCCceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcc
Q ss_pred CeeEEEECCCCCeEEEEec-----CCCCCeEEEEEccCC--EEEEEeeCCCceEEEECCCCCEEEEEEcCCceeeCCcEE
Q 013871 238 PYNTVRWNPKGKFLCLAGF-----GNLPGDMAFWDYVDG--KQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIK 310 (434)
Q Consensus 238 ~~~~i~~SP~g~~l~~~~~-----~~~~g~i~iwd~~~~--~~i~~~~~~~~~~~~wspdg~~l~tas~~prl~~D~~i~ 310 (434)
........-+++++++||. ......+++||..+. +.+..............-+++.++.++....-..-+.+.
T Consensus 89 r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 168 (315)
T 4asc_A 89 RCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMC 168 (315)
T ss_dssp EESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTTSCBCCCEE
T ss_pred hhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCCCcccceEE
Q ss_pred EEeecCceeee
Q 013871 311 IFHHNGSLFFK 321 (434)
Q Consensus 311 iw~~~g~~~~~ 321 (434)
+||........
T Consensus 169 ~yd~~~~~W~~ 179 (315)
T 4asc_A 169 VYDPKKFEWKE 179 (315)
T ss_dssp EEETTTTEEEE
T ss_pred EEeCCCCeEEE
No 354
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=33.51 E-value=2.4e+02 Score=24.47 Aligned_cols=52 Identities=6% Similarity=0.091 Sum_probs=31.5
Q ss_pred CeEEEEecccceeEEeC---C--cCeeEEEECCCCCeEEEEecCCC--CCeEEEEEccCCE
Q 013871 219 ASATIFNKKCRPILELG---S--GPYNTVRWNPKGKFLCLAGFGNL--PGDMAFWDYVDGK 272 (434)
Q Consensus 219 ~~v~l~d~~~~~~~~~~---~--~~~~~i~~SP~g~~l~~~~~~~~--~g~i~iwd~~~~~ 272 (434)
..+.+||.....-..+. . .....+.+ +++++++||.+.. ...+++||..+.+
T Consensus 173 ~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 231 (302)
T 2xn4_A 173 STVECYNATTNEWTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNA 231 (302)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTE
T ss_pred cEEEEEeCCCCcEEECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCC
Confidence 36889998766544432 1 11122233 6778888875431 3479999998774
No 355
>3a0c_A Mannose/sialic acid-binding lectin; beta-prism II, sugar binding protein; 2.00A {Polygonatum cyrtonema} PDB: 3a0d_A* 3a0e_A*
Probab=32.72 E-value=1.5e+02 Score=21.82 Aligned_cols=60 Identities=12% Similarity=0.119 Sum_probs=31.8
Q ss_pred CCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCC
Q 013871 9 RVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTT 78 (434)
Q Consensus 9 P~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~ 78 (434)
++|.+-+... .|+++.+++ .+..+..-.... ...-..+.+..||++++...++. .+|...
T Consensus 18 ~~~~~~l~~~-----~dGnlvl~~--~~~~vW~sn~~~--~~~~~~l~l~~dGNLVl~~~~~~-~~W~S~ 77 (110)
T 3a0c_A 18 VGPSYRLIMQ-----GDCNFVLYD--SGKPVWASNTGG--LGSGCRLTLHNNGNLVIYDQSNR-VIWQTK 77 (110)
T ss_dssp ETTTEEEEEC-----TTSCEEEEE--TTEEEEECCCTT--SCSSCEEEECTTSCEEEECTTCC-EEEECC
T ss_pred ECCCEEEEEc-----CCCcEEEEE--CCEEEEECCCCC--CCCcEEEEEeCCCCEEEECCCCc-EEEecC
Confidence 4555555555 677887777 344443321111 01111466777888777654443 467654
No 356
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=30.69 E-value=2.4e+02 Score=28.51 Aligned_cols=95 Identities=8% Similarity=0.030 Sum_probs=52.2
Q ss_pred CeEEEEecccceeEEeC-C----------cCeeEEEECCCCCeEEEEecCCC---CCeEEEEEccCCE--EEEEeeCCCc
Q 013871 219 ASATIFNKKCRPILELG-S----------GPYNTVRWNPKGKFLCLAGFGNL---PGDMAFWDYVDGK--QLGTTRAECS 282 (434)
Q Consensus 219 ~~v~l~d~~~~~~~~~~-~----------~~~~~i~~SP~g~~l~~~~~~~~---~g~i~iwd~~~~~--~i~~~~~~~~ 282 (434)
..+.+||.....-..+. . .....+.++.+|+++++||.+.. -..+++||..+.+ .+........
T Consensus 412 ~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~ 491 (695)
T 2zwa_A 412 NEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRF 491 (695)
T ss_dssp CCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCB
T ss_pred CcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcc
Confidence 36888988654433222 1 11223334337888888886542 2479999998864 3322222222
Q ss_pred eE-EEECCCCCEEEEEEcCCceeeCCcEEEEeecCc
Q 013871 283 VT-SEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS 317 (434)
Q Consensus 283 ~~-~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~ 317 (434)
.. +..-.+|+.++.|+... ++.+.+||....
T Consensus 492 ~h~~~~~~~~~iyv~GG~~~----~~~v~~yd~~t~ 523 (695)
T 2zwa_A 492 RHSACSLPDGNVLILGGVTE----GPAMLLYNVTEE 523 (695)
T ss_dssp SCEEEECTTSCEEEECCBCS----SCSEEEEETTTT
T ss_pred cceEEEEcCCEEEEECCCCC----CCCEEEEECCCC
Confidence 12 23324888888887631 115677776443
No 357
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=30.27 E-value=2.8e+02 Score=24.22 Aligned_cols=53 Identities=8% Similarity=0.035 Sum_probs=32.5
Q ss_pred CeEEEEecccceeEEeCC-----cCeeEEEECCCCCeEEEEecCCC--CCeEEEEEccCCEE
Q 013871 219 ASATIFNKKCRPILELGS-----GPYNTVRWNPKGKFLCLAGFGNL--PGDMAFWDYVDGKQ 273 (434)
Q Consensus 219 ~~v~l~d~~~~~~~~~~~-----~~~~~i~~SP~g~~l~~~~~~~~--~g~i~iwd~~~~~~ 273 (434)
..+.+||.....-..+.. .....+.+ +++++++||.+.. ...+++||..+.+-
T Consensus 184 ~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W 243 (308)
T 1zgk_A 184 NSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETW 243 (308)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred ceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcE
Confidence 368899987665544421 11222333 6778888876432 25799999987743
No 358
>2fr2_A Hypothetical protein RV2717C; beta barrel, fatty acid binding, structural genomics, PSI, P structure initiative; 1.50A {Mycobacterium tuberculosis} SCOP: b.60.1.8
Probab=27.62 E-value=2.5e+02 Score=22.82 Aligned_cols=56 Identities=11% Similarity=0.039 Sum_probs=35.5
Q ss_pred eEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe--cCCeEEEEeC
Q 013871 4 LLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM--ATNEIQFFDT 77 (434)
Q Consensus 4 ~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~--~~~~i~v~~~ 77 (434)
-|.||++|.-.+.+. -+.|.+.+++.++.-.+ ...|.|++...++. ..|.+-||..
T Consensus 38 ei~fs~~G~p~L~Y~---------s~~w~~~~~~p~h~E~G---------fwr~~~~g~ve~~la~p~G~~ei~~G 95 (172)
T 2fr2_A 38 EVVFAHVGKPFLTYT---------QQTRAVADGKPLHSETG---------YLRVCRPGCVELVLAHPSGITEIEVG 95 (172)
T ss_dssp EEEEEECSSSEEEEE---------EEEEETTTCCEEEEEEE---------EEEESSTTEEEEEEEETTTEEEEEEE
T ss_pred EEEEEECCCCeEEEE---------EEEEECCCCCcceEeeE---------EEEECCCCcEEEEEEeCCceEEEEEE
Confidence 467888887655555 67888888766554222 35677777544444 3467777764
No 359
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=26.89 E-value=3.1e+02 Score=23.69 Aligned_cols=54 Identities=9% Similarity=0.148 Sum_probs=31.7
Q ss_pred CeEEEEecccceeEEeC---CcCeeEEEECCCCCeEEEEecCCC--CCeEEEEEccCCE
Q 013871 219 ASATIFNKKCRPILELG---SGPYNTVRWNPKGKFLCLAGFGNL--PGDMAFWDYVDGK 272 (434)
Q Consensus 219 ~~v~l~d~~~~~~~~~~---~~~~~~i~~SP~g~~l~~~~~~~~--~g~i~iwd~~~~~ 272 (434)
..+.+||.+...-..+. ..........-+++++++||.+.. ...+++||.++.+
T Consensus 220 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 220 KSVEVYDPTTNAWRQVADMNMCRRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred ceEEEEeCCCCCEeeCCCCCCccccCeEEEECCEEEEECCcCCCcccccEEEEcCCCCe
Confidence 37889999766554442 111111122236778888875431 2468999988764
No 360
>2a13_A AT1G79260; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, unknown function; HET: MSE; 1.32A {Arabidopsis thaliana} SCOP: b.60.1.8 PDB: 2q4n_A 3emm_A*
Probab=26.51 E-value=2.4e+02 Score=22.68 Aligned_cols=56 Identities=14% Similarity=0.197 Sum_probs=30.8
Q ss_pred eEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe--cCCeEEEEeC
Q 013871 4 LLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM--ATNEIQFFDT 77 (434)
Q Consensus 4 ~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~--~~~~i~v~~~ 77 (434)
-|.|+++|.-.+.+. -+.|.+.+++..+.-.+ ...|.|++...++. ..+.+-+|..
T Consensus 49 ei~fs~~G~p~L~Y~---------~~~w~~~~~~p~h~E~G---------ywr~~p~~~ve~~la~p~G~~ei~~G 106 (166)
T 2a13_A 49 EIRFSHSGKPVIAYT---------QKTWKLESGAPMHAESG---------YFRPRPDGSIEVVIAQSTGLVEVQKG 106 (166)
T ss_dssp EEEEECCSSSCEEEE---------EEEECTTTCCEEEEEEE---------EEEECTTSEEEEEEEETTSCEEEEEE
T ss_pred EEEEEeCCCCeEEEE---------EEEEECCCCCcceEeeE---------EEEECCCCcEEEEEEeCCceEEEEEE
Confidence 366777775444444 56777777765544222 34566766544433 2355666553
No 361
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=22.14 E-value=4.7e+02 Score=24.20 Aligned_cols=113 Identities=6% Similarity=0.059 Sum_probs=68.3
Q ss_pred CCeEEEEEC---cC---CCEEEEEEccCCCeEEEEecccceeEEe-C--------------------CcCeeEEEECCC-
Q 013871 196 GPVHDVQWS---YS---GSEFAVVYGFMPASATIFNKKCRPILEL-G--------------------SGPYNTVRWNPK- 247 (434)
Q Consensus 196 ~~i~~v~ws---pd---g~~~av~~g~~~~~v~l~d~~~~~~~~~-~--------------------~~~~~~i~~SP~- 247 (434)
..+.++.+. |+ +.-+|.++.....-+.+||++......+ | ...+..|+.||+
T Consensus 152 S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~ 231 (381)
T 3q6k_A 152 TYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRD 231 (381)
T ss_dssp GGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCC
T ss_pred CccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCc
Confidence 356677666 22 2577777776677899999864332211 1 235678999998
Q ss_pred ---CCeEEEEecCCCCCeEEEEEcc---C------CEEEEEee-CCCceEEEEC-CCCCEEEEEEcCCceeeCCcEEEEe
Q 013871 248 ---GKFLCLAGFGNLPGDMAFWDYV---D------GKQLGTTR-AECSVTSEWS-PDGRYFMTATTAPRLQIDNGIKIFH 313 (434)
Q Consensus 248 ---g~~l~~~~~~~~~g~i~iwd~~---~------~~~i~~~~-~~~~~~~~ws-pdg~~l~tas~~prl~~D~~i~iw~ 313 (434)
++.|......+ ..++-..++ + -+.+.... ......++.+ .+|..+++-.. .+.|..|+
T Consensus 232 ~~~~~~LYf~plss--~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~------~~aI~~w~ 303 (381)
T 3q6k_A 232 SEGNRPAYYLAGSA--IKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEAN------TKQVSCWN 303 (381)
T ss_dssp TTSCCEEEEEESSC--SEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTCEEEEEESS------SSEEEEEE
T ss_pred CCCCeEEEEEECCC--CcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCCeEEEEecc------CCeEEEEe
Confidence 78888776322 134433321 1 12333321 1233346775 67887777777 89999999
Q ss_pred ecC
Q 013871 314 HNG 316 (434)
Q Consensus 314 ~~g 316 (434)
..+
T Consensus 304 ~~~ 306 (381)
T 3q6k_A 304 TQK 306 (381)
T ss_dssp TTS
T ss_pred CCC
Confidence 887
No 362
>3dzw_A Agglutinin; lectin, mannobiose, mannose-alpha1, 3-mannose, D sugar binding protein; HET: MAN; 1.70A {Narcissus pseudonarcissus} SCOP: b.78.1.1 PDB: 1npl_A* 1jpc_A* 1msa_A* 1niv_A*
Probab=21.63 E-value=2.4e+02 Score=20.54 Aligned_cols=60 Identities=12% Similarity=0.254 Sum_probs=30.6
Q ss_pred CCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCC
Q 013871 10 VGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTD 79 (434)
Q Consensus 10 ~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~ 79 (434)
+|+|.+... .|+++.|++. +..+..-.... ..... .+.+..||.+++...++. .+|....
T Consensus 18 ~g~~~L~~q-----~dGnLvly~~--~~~vW~snt~~-~~~~~-~l~l~~dGNLvl~~~~~~-~~W~S~t 77 (109)
T 3dzw_A 18 NGRYVFIMQ-----EDCNLVLYDV--DKPIWATNTGG-LDRRC-HLSMQSDGNLVVYSPRNN-PIWASNT 77 (109)
T ss_dssp ETTEEEEEC-----TTSCEEEEET--TEEEEECCCTT-SSSSC-EEEECTTSCEEEECTTSC-EEEECCC
T ss_pred CCCEEEEEc-----CCCcEEEEeC--CEEEEECCccc-CCCCE-EEEEeCCCCEEEECCCCC-EEEECCC
Confidence 355555555 6777877764 33333211111 00112 456777787777654443 3676543
No 363
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=21.57 E-value=87 Score=34.08 Aligned_cols=38 Identities=11% Similarity=0.085 Sum_probs=30.5
Q ss_pred CeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEee
Q 013871 238 PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTR 278 (434)
Q Consensus 238 ~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~ 278 (434)
.+.+++..++..++.+-. .|++++|||+.++.++.+..
T Consensus 239 ~~vs~~~~~~~~~lftL~---~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLS---LDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEETTTTEEEEEB---TTCEEEEEETTTTEEEEEEE
T ss_pred eeEEeeccCCccEEEEEe---CCCEEEEEECCCCCeEEeec
Confidence 345667778888998888 55699999999999888754
No 364
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=21.04 E-value=4.6e+02 Score=23.81 Aligned_cols=107 Identities=9% Similarity=0.104 Sum_probs=0.0
Q ss_pred EEEEccCCCeEEEEec-ccceeEEeCCcCeeEEEECC------CCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC---
Q 013871 211 AVVYGFMPASATIFNK-KCRPILELGSGPYNTVRWNP------KGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--- 280 (434)
Q Consensus 211 av~~g~~~~~v~l~d~-~~~~~~~~~~~~~~~i~~SP------~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--- 280 (434)
.|+.+..++.+.-+|. .++..-++.......+.-.. +|..++...+.+ |.|+.+|..+|.....+...
T Consensus 12 ~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~d--G~l~a~~~~~G~~~~~~~~~~lv 89 (339)
T 2be1_A 12 ILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGD--GNIYYFNAHQGLQKLPLSIRQLV 89 (339)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTT--TEEEEEETTTEEEEEEEEHHHHH
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCC--CEEEEEECCCCcEEeeeccccce
Q ss_pred CceEEEECC-----------CCCEEEEEEcCCceeeCCcEEEEee-cCceeeeeecc
Q 013871 281 CSVTSEWSP-----------DGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKKMFD 325 (434)
Q Consensus 281 ~~~~~~wsp-----------dg~~l~tas~~prl~~D~~i~iw~~-~g~~~~~~~~~ 325 (434)
...-+..+. ++..+++++. ++.+...|. +|+.+.+....
T Consensus 90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~------~g~l~ald~~tG~~~W~~~~~ 140 (339)
T 2be1_A 90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSM------RTIMYTINMLNGEIISAFGPG 140 (339)
T ss_dssp TTCSEEEECC----------CCEEEEECEE------EEEEEEEETTTCCEEEEESTT
T ss_pred eccccccCCCceeecccccccCCEEEEEec------CCEEEEEECCCCcEEEEEecC
Done!