BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013873
(434 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 85.1 bits (209), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 78/314 (24%), Positives = 139/314 (44%), Gaps = 42/314 (13%)
Query: 49 KLEKIFAR--PFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYS 106
K K++ R + L GH + +A +P+ + S S D ++LW+ N + + +
Sbjct: 38 KTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDG-QTIASASDDKTVKLWN-RNGQLLQTLT 95
Query: 107 GHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLXXXXXXXXXXXEPLAVYVWKNSF 166
GH +VRG+ S DG+ + S D TVKLWN L + L + +S
Sbjct: 96 GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLL-----------QTLTGH--SSSV 142
Query: 167 WAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTAS 224
W V +G A+A V +WN N Q + + + +V V F+P + +A+ +
Sbjct: 143 WGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSP-DGQTIASASD 200
Query: 225 DRSITLYDLRMS-----------------SPARKVIMRANEDCNCYSYDSRKLDEAKCVH 267
D+++ L++ SP + I A++D ++ + +
Sbjct: 201 DKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN--RNGQLLQTL 258
Query: 268 MGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDAS 327
GH S+V + + P G+ + S D+T++++ NG + + T V+ V FS D
Sbjct: 259 TGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTL--TGHSSSVWGVAFSPDGQ 316
Query: 328 YVISGSDDTNLRLW 341
+ S SDD ++LW
Sbjct: 317 TIASASDDKTVKLW 330
Score = 81.6 bits (200), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 78/314 (24%), Positives = 138/314 (43%), Gaps = 42/314 (13%)
Query: 49 KLEKIFAR--PFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYS 106
K K++ R + L GH ++ +A P+ + S S D ++LW+ N + + +
Sbjct: 243 KTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDG-QTIASASDDKTVKLWN-RNGQLLQTLT 300
Query: 107 GHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLXXXXXXXXXXXEPLAVYVWKNSF 166
GH +V G+ S DG+ + S D TVKLWN L + L + +S
Sbjct: 301 GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHL-----------QTLTGH--SSSV 347
Query: 167 WAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTAS 224
W V +G A+A V +WN N Q + + + +V V F+P + +A+ +
Sbjct: 348 WGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSP-DGQTIASASD 405
Query: 225 DRSITLYDLRMS-----------------SPARKVIMRANEDCNCYSYDSRKLDEAKCVH 267
D+++ L++ SP + I A++D ++ + +
Sbjct: 406 DKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWN--RNGQLLQTL 463
Query: 268 MGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDAS 327
GH S+V + +SP G+ + S D+T++++ NG + + T V V FS D
Sbjct: 464 TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTL--TGHSSSVRGVAFSPDGQ 521
Query: 328 YVISGSDDTNLRLW 341
+ S SDD ++LW
Sbjct: 522 TIASASDDKTVKLW 535
Score = 75.1 bits (183), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 70/282 (24%), Positives = 123/282 (43%), Gaps = 47/282 (16%)
Query: 62 LDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDG 121
L GH + +A +P+ + S S D ++LW+ N + + +GH +VRG+ S DG
Sbjct: 340 LTGHSSSVWGVAFSPDG-QTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDG 397
Query: 122 RILVSCGTDCTVKLWNVPVATLXXXXXXXXXXXEPLAVYVWKNSFWAVDHQWEGDLFATA 181
+ + S D TVKLWN L + L + +S W V + A+A
Sbjct: 398 QTIASASDDKTVKLWNRNGQLL-----------QTLTGH--SSSVWGVAFSPDDQTIASA 444
Query: 182 G--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPA 239
V +WN N Q + + + +V V F+P + +A+ + D+++ L++
Sbjct: 445 SDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWN------- 495
Query: 240 RKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQ 299
R + + GH S+V + +SP G+ + S D+T++++
Sbjct: 496 -----RNGQLLQTLT--------------GHSSSVRGVAFSPDGQTIASASDDKTVKLWN 536
Query: 300 YNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLW 341
NG + + T V+ V FS D + S S D ++LW
Sbjct: 537 RNGQLLQTL--TGHSSSVWGVAFSPDGQTIASASSDKTVKLW 576
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/253 (25%), Positives = 110/253 (43%), Gaps = 38/253 (15%)
Query: 108 HQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLXXXXXXXXXXXEPLAVYVWKNSFW 167
H +VRG+ S DG+ + S D TVKLWN L + L + +S W
Sbjct: 15 HSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLL-----------QTLTGH--SSSVW 61
Query: 168 AVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASD 225
V +G A+A V +WN N Q + + + +V V F+P + +A+ + D
Sbjct: 62 GVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSP-DGQTIASASDD 119
Query: 226 RSITLYDLRMS-----------------SPARKVIMRANEDCNCYSYDSRKLDEAKCVHM 268
+++ L++ SP + I A++D ++ + +
Sbjct: 120 KTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN--RNGQLLQTLT 177
Query: 269 GHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASY 328
GH S+V + +SP G+ + S D+T++++ NG + + T V V FS D
Sbjct: 178 GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTL--TGHSSSVRGVAFSPDGQT 235
Query: 329 VISGSDDTNLRLW 341
+ S SDD ++LW
Sbjct: 236 IASASDDKTVKLW 248
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 4/91 (4%)
Query: 49 KLEKIFAR--PFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYS 106
K K++ R + L GH + +A +P+ + S S D ++LW+ N + + +
Sbjct: 489 KTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDG-QTIASASDDKTVKLWN-RNGQLLQTLT 546
Query: 107 GHQGAVRGLTVSTDGRILVSCGTDCTVKLWN 137
GH +V G+ S DG+ + S +D TVKLWN
Sbjct: 547 GHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 76/341 (22%), Positives = 134/341 (39%), Gaps = 58/341 (17%)
Query: 39 VEYVRALTAAKLEKIFARPFIGALDGHRDGI--SCMAKNPNYLKGFFSGSMDGDIRLWDI 96
+E++ L ++ RP H D + +C +++ + S D ++++
Sbjct: 601 LEWINKKNITNLSRLVVRP-------HTDAVYHACFSEDGQRIA---SCGADKTLQVFKA 650
Query: 97 ANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLXXXXXXXXXXXEP 156
+ + H+ V STD R + +C D VK+WN L E
Sbjct: 651 ETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHS---EQ 707
Query: 157 LAVYVWKNSFWAVDHQWEGDLFATAGAQ--VDIWNHNRSQPINSFQWGTDTVISVRFNPA 214
+ + NS H L AT + + +W+ N+ + N+ T++V RF+P
Sbjct: 708 VNCCHFTNS----SHHL---LLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSP- 759
Query: 215 EPNVLATTASDRSITLYDLRMSSPARKVI---------------MRANEDCNCYSYD-SR 258
+ +LA+ ++D ++ L+D S+ RK I M C +S D +R
Sbjct: 760 DDKLLASCSADGTLKLWD-ATSANERKSINVKQFFLNLEDPQEDMEVIVKCCSWSADGAR 818
Query: 259 KLDEAKC---------------VHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGG 303
+ AK +H GH S + D+SP V + ++ +
Sbjct: 819 IMVAAKNKIFLFDIHTSGLLGEIHTGHHSTIQYCDFSPQNHLAVVALSQYCVELWNTDS- 877
Query: 304 RSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAK 344
RS+ + V V FS D S ++ SDD +RLW+ K
Sbjct: 878 RSKVADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRLWETK 918
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 5/96 (5%)
Query: 270 HESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQR--VFCVKFSCDAS 327
H+ V+ D S +F + S D+T +I+ ++ H R V C FS D++
Sbjct: 1090 HQGTVLSCDISHDATKFSSTSADKTAKIWSFDLLLP---LHELRGHNGCVRCSAFSVDST 1146
Query: 328 YVISGSDDTNLRLWKAKASEQLGVLHPREQRKHAYH 363
+ +G D+ +R+W E L + P + A H
Sbjct: 1147 LLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATH 1182
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 6/81 (7%)
Query: 62 LDGHRDGISCMAKNPNYLKG--FFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVST 119
L GH++ + K+ LK S S DG +++W+I + HQG V +S
Sbjct: 1046 LRGHQETV----KDFRLLKNSRLLSWSFDGTVKVWNIITGNKEKDFVCHQGTVLSCDISH 1101
Query: 120 DGRILVSCGTDCTVKLWNVPV 140
D S D T K+W+ +
Sbjct: 1102 DATKFSSTSADKTAKIWSFDL 1122
Score = 35.8 bits (81), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Query: 270 HESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYV 329
H AV +S G+ + D+T+++F+ G + + V C FS D ++
Sbjct: 620 HTDAVYHACFSEDGQRIASCGADKTLQVFKAETGE-KLLEIKAHEDEVLCCAFSTDDRFI 678
Query: 330 ISGSDDTNLRLWKAKASE 347
+ S D +++W + E
Sbjct: 679 ATCSVDKKVKIWNSMTGE 696
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 52/274 (18%), Positives = 101/274 (36%), Gaps = 53/274 (19%)
Query: 69 ISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCG 128
+SC +P +L+ G +G I + ++ N R H+ V + + D + L+S
Sbjct: 970 VSCCCLSP-HLQYIAFGDENGAIEILELVNNRIFQSRFQHKKTVWHIQFTADEKTLISSS 1028
Query: 129 TDCTVKLWNVPVATLXXXXXXXXXXXEPLAVYVWKNS---FWAVDHQWEGDLFATAGAQV 185
D +++WN + + + KNS W+ D V
Sbjct: 1029 DDAEIQVWNWQLDKCIFLRGHQETVKD---FRLLKNSRLLSWSFD------------GTV 1073
Query: 186 DIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMR 245
+WN F TV+S + + ++T++D++ ++ + P + +R
Sbjct: 1074 KVWNIITGNKEKDFVCHQGTVLSCDIS-HDATKFSSTSADKTAKIWSFDLLLPLHE--LR 1130
Query: 246 ANED---CNCYSYDSRKLDEAK------------------CVHMGHESA------VMDID 278
+ C+ +S DS L C + E A V D+
Sbjct: 1131 GHNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHGGWVTDLC 1190
Query: 279 YSPTGREFVT-GSYDRTIRIFQYNGGRSREIYHT 311
+SP G+ ++ G Y I+ + G S + ++T
Sbjct: 1191 FSPDGKMLISAGGY---IKWWNVVTGESSQTFYT 1221
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 74/355 (20%), Positives = 135/355 (38%), Gaps = 61/355 (17%)
Query: 32 LRPQEKAVEYVRALTAAKLEKIFARPFIG---------------ALDGHRDGISCMAKNP 76
+R Q+K +E L AK E P AL GHR ++ + +P
Sbjct: 59 IRLQKKVMELESKLNEAKEEFTSGGPLGQKRDPKEWIPRPPEKYALSGHRSPVTRVIFHP 118
Query: 77 NYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLW 136
+ S S D I++WD GH +V+ ++ G++L SC D T+KLW
Sbjct: 119 VF-SVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLW 177
Query: 137 NVPVATLXXXXXXXXXXXEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQ 194
+ +++ GD +A + +W
Sbjct: 178 DFQGFECIRTMHGHDHNVSSVSIMP------------NGDHIVSASRDKTIKMWEVQTGY 225
Query: 195 PINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYS 254
+ +F + V VR N + ++A+ ++D+++ +V + A ++C
Sbjct: 226 CVKTFTGHREWVRMVRPN-QDGTLIASCSNDQTV------------RVWVVATKECKAEL 272
Query: 255 YDSRKLDEAKCVHMGHESAVMDIDYSPTGRE----------FVTGSYDRTIRIFQYNGGR 304
+ R + E C+ ES+ I TG E ++GS D+TI+++ + G
Sbjct: 273 REHRHVVE--CISWAPESSYSSIS-EATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM 329
Query: 305 SRE--IYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLHPREQ 357
+ H ++ V F +++S +DD LR+W K + L+ E
Sbjct: 330 CLMTLVGHDNWVRGVL---FHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEH 381
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 56/286 (19%), Positives = 111/286 (38%), Gaps = 60/286 (20%)
Query: 59 IGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVS 118
I + GH +S ++ PN S S D I++W++ V ++GH+ VR + +
Sbjct: 185 IRTMHGHDHNVSSVSIMPNG-DHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPN 243
Query: 119 TDGRILVSCGTDCTVKLWNVPVATLXXXXXXXXXXXEPLAVYVWKNSFWAVDHQWEGDLF 178
DG ++ SC D TV++W V E ++ WA + +
Sbjct: 244 QDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECIS--------WAPESSYSSISE 295
Query: 179 ATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSP 238
AT G++T S + P L + + D++I ++D+
Sbjct: 296 AT---------------------GSETKKSGKPGP----FLLSGSRDKTIKMWDVSTGMC 330
Query: 239 ARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIF 298
++ GH++ V + + G+ ++ + D+T+R++
Sbjct: 331 LMTLV-------------------------GHDNWVRGVLFHSGGKFILSCADDKTLRVW 365
Query: 299 QYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAK 344
Y R + + V + F A YV++GS D +++W+ +
Sbjct: 366 DYKNKRCMKTLNAHE-HFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 63 DGHRDGISCMAKNPNYLK-GFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDG 121
+GHRD +SC+ +PN L+ S S D +++W+++N + +GH G V + VS DG
Sbjct: 514 EGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDG 573
Query: 122 RILVSCGTDCTVKLWNV 138
+ S G D V LW++
Sbjct: 574 SLCASGGKDGVVLLWDL 590
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 33/55 (60%)
Query: 83 FSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWN 137
SGS DG++RLWD+A + ++ GH V + S D R +VS D T+KLWN
Sbjct: 446 LSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWN 500
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 62/141 (43%), Gaps = 25/141 (17%)
Query: 203 TDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDE 262
TD V ++ +++ + + D+SI L+ L +D Y R+L
Sbjct: 382 TDMVTAIATPIDNADIIVSASRDKSIILWKL-------------TKDDKAYGVAQRRL-- 426
Query: 263 AKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRS--REIYHTKRMQRVFCV 320
GH V D+ S G+ ++GS+D +R++ G S R + HTK V V
Sbjct: 427 -----TGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTK---DVLSV 478
Query: 321 KFSCDASYVISGSDDTNLRLW 341
FS D ++S S D ++LW
Sbjct: 479 AFSLDNRQIVSASRDRTIKLW 499
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 13/88 (14%)
Query: 60 GALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLW---------DIANRRTVCQYSGHQG 110
G + H D ++ +A + S S D I LW +A RR +GH
Sbjct: 376 GTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRR----LTGHSH 431
Query: 111 AVRGLTVSTDGRILVSCGTDCTVKLWNV 138
V + +S+DG+ +S D ++LW++
Sbjct: 432 FVEDVVLSSDGQFALSGSWDGELRLWDL 459
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 7/79 (8%)
Query: 62 LDGHRDGISCMAKNPNYLKGFF--SGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVST 119
L GH +S +A +P+ G SG DG + LWD+A + + YS +V +
Sbjct: 557 LAGHTGYVSTVAVSPD---GSLCASGGKDGVVLLWDLAEGKKL--YSLEANSVIHALCFS 611
Query: 120 DGRILVSCGTDCTVKLWNV 138
R + T+ +K+W++
Sbjct: 612 PNRYWLCAATEHGIKIWDL 630
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/291 (20%), Positives = 117/291 (40%), Gaps = 44/291 (15%)
Query: 62 LDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDG 121
L GH +S + +PN + S S D I++W + + SGH+ + + S+D
Sbjct: 41 LAGHTKAVSSVKFSPNG-EWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 99
Query: 122 RILVSCGTDCTVKLWNVPVATLXXXXXXXXXXXEPLAVYVWKNSFWAVDHQWEGDLFATA 181
+LVS D T+K+W+V N + + + +L +
Sbjct: 100 NLLVSASDDKTLKIWDVSSGKCLKTLKGHS------------NYVFCCNFNPQSNLIVSG 147
Query: 182 G--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPA 239
V IW+ + + + +D V +V FN D S+
Sbjct: 148 SFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN-----------RDGSL----------- 185
Query: 240 RKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQ 299
I+ ++ D C +D+ K + V + +SP G+ + + D T++++
Sbjct: 186 ---IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 242
Query: 300 YNGGRSREIYHTKRMQRVFCV--KFSCDAS-YVISGSDDTNLRLWKAKASE 347
Y+ G+ + Y + ++ +C+ FS +++SGS+D + +W + E
Sbjct: 243 YSKGKCLKTYTGHKNEK-YCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 292
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
Query: 269 GHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASY 328
GH+ + D+ +S V+ S D+T++I+ + G+ + VFC F+ ++
Sbjct: 85 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFNPQSNL 143
Query: 329 VISGSDDTNLRLWKAKASEQLGVLHPREQRKHAYH 363
++SGS D ++R+W K + L L A H
Sbjct: 144 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVH 178
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 71/321 (22%), Positives = 134/321 (41%), Gaps = 63/321 (19%)
Query: 40 EYVRALTAAKLEKIFAR---PFIGALDGHRDGISCMA--KNPNYLKGFFSGSMDGDIRLW 94
E++ + +A KL KI+ F + GH+ GIS +A + N L S S D +++W
Sbjct: 58 EWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL---VSASDDKTLKIW 114
Query: 95 DIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLXXXXXXXXXXX 154
D+++ + + GH V + ++VS D +V++W+V
Sbjct: 115 DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC---LKTLPAHS 171
Query: 155 EPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVIS-VRF 211
+P++ AV +G L ++ IW+ Q + + + +S V+F
Sbjct: 172 DPVS---------AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 222
Query: 212 NPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCV--HMG 269
+P +LA T D ++ L+D YS + KC+ + G
Sbjct: 223 SPNGKYILAATL-DNTLKLWD--------------------YS-------KGKCLKTYTG 254
Query: 270 H--ESAVMDIDYSPTGREF-VTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDA 326
H E + ++S TG ++ V+GS D + I+ +++EI + + +C
Sbjct: 255 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL---QTKEIVQKLQGHTDVVISTACHP 311
Query: 327 SYVISGS----DDTNLRLWKA 343
+ I S +D ++LWK+
Sbjct: 312 TENIIASAALENDKTIKLWKS 332
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 269 GHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASY 328
GH AV + +SP G + S D+ I+I+ G+ + ++ + V +S D++
Sbjct: 43 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSDSNL 101
Query: 329 VISGSDDTNLRLWKAKASEQLGVL 352
++S SDD L++W + + L L
Sbjct: 102 LVSASDDKTLKIWDVSSGKCLKTL 125
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/265 (19%), Positives = 110/265 (41%), Gaps = 37/265 (13%)
Query: 106 SGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLXXXXXXXXXXXEPLAVYVWKNS 165
+GH AV + S +G L S D +K+W +A
Sbjct: 16 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA------- 68
Query: 166 FWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTA 223
W+ D +L +A + IW+ + + + + + ++ V FNP + N++ + +
Sbjct: 69 -WSSD----SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGS 122
Query: 224 SDRSITLYDLRM----------SSPARKV--------IMRANEDCNCYSYDSRKLDEAKC 265
D S+ ++D++ S P V I+ ++ D C +D+ K
Sbjct: 123 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 182
Query: 266 VHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCV--KFS 323
+ V + +SP G+ + + D T++++ Y+ G+ + Y + ++ +C+ FS
Sbjct: 183 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK-YCIFANFS 241
Query: 324 CDAS-YVISGSDDTNLRLWKAKASE 347
+++SGS+D + +W + E
Sbjct: 242 VTGGKWIVSGSEDNLVYIWNLQTKE 266
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
Query: 269 GHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASY 328
GH+ + D+ +S V+ S D+T++I+ + G+ + VFC F+ ++
Sbjct: 59 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFNPQSNL 117
Query: 329 VISGSDDTNLRLWKAKASEQLGVLHPREQRKHAYH 363
++SGS D ++R+W K + L L A H
Sbjct: 118 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVH 152
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 71/321 (22%), Positives = 134/321 (41%), Gaps = 63/321 (19%)
Query: 40 EYVRALTAAKLEKIFAR---PFIGALDGHRDGISCMA--KNPNYLKGFFSGSMDGDIRLW 94
E++ + +A KL KI+ F + GH+ GIS +A + N L S S D +++W
Sbjct: 32 EWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL---VSASDDKTLKIW 88
Query: 95 DIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLXXXXXXXXXXX 154
D+++ + + GH V + ++VS D +V++W+V
Sbjct: 89 DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC---LKTLPAHS 145
Query: 155 EPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVIS-VRF 211
+P++ AV +G L ++ IW+ Q + + + +S V+F
Sbjct: 146 DPVS---------AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 196
Query: 212 NPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCV--HMG 269
+P +LA T D ++ L+D YS + KC+ + G
Sbjct: 197 SPNGKYILAATL-DNTLKLWD--------------------YS-------KGKCLKTYTG 228
Query: 270 H--ESAVMDIDYSPTGREF-VTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDA 326
H E + ++S TG ++ V+GS D + I+ +++EI + + +C
Sbjct: 229 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL---QTKEIVQKLQGHTDVVISTACHP 285
Query: 327 SYVISGS----DDTNLRLWKA 343
+ I S +D ++LWK+
Sbjct: 286 TENIIASAALENDKTIKLWKS 306
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 269 GHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASY 328
GH AV + +SP G + S D+ I+I+ G+ + ++ + V +S D++
Sbjct: 17 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSDSNL 75
Query: 329 VISGSDDTNLRLWKAKASEQLGVL 352
++S SDD L++W + + L L
Sbjct: 76 LVSASDDKTLKIWDVSSGKCLKTL 99
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/265 (19%), Positives = 110/265 (41%), Gaps = 37/265 (13%)
Query: 106 SGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLXXXXXXXXXXXEPLAVYVWKNS 165
+GH AV + S +G L S D +K+W +A
Sbjct: 26 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA------- 78
Query: 166 FWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTA 223
W+ D +L +A + IW+ + + + + + ++ V FNP + N++ + +
Sbjct: 79 -WSSD----SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGS 132
Query: 224 SDRSITLYDLRM----------SSPARKV--------IMRANEDCNCYSYDSRKLDEAKC 265
D S+ ++D++ S P V I+ ++ D C +D+ K
Sbjct: 133 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 192
Query: 266 VHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCV--KFS 323
+ V + +SP G+ + + D T++++ Y+ G+ + Y + ++ +C+ FS
Sbjct: 193 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK-YCIFANFS 251
Query: 324 CDAS-YVISGSDDTNLRLWKAKASE 347
+++SGS+D + +W + E
Sbjct: 252 VTGGKWIVSGSEDNLVYIWNLQTKE 276
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
Query: 269 GHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASY 328
GH+ + D+ +S V+ S D+T++I+ + G+ + VFC F+ ++
Sbjct: 69 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFNPQSNL 127
Query: 329 VISGSDDTNLRLWKAKASEQLGVLHPREQRKHAYH 363
++SGS D ++R+W K + L L A H
Sbjct: 128 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVH 162
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 71/321 (22%), Positives = 134/321 (41%), Gaps = 63/321 (19%)
Query: 40 EYVRALTAAKLEKIFAR---PFIGALDGHRDGISCMA--KNPNYLKGFFSGSMDGDIRLW 94
E++ + +A KL KI+ F + GH+ GIS +A + N L S S D +++W
Sbjct: 42 EWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL---VSASDDKTLKIW 98
Query: 95 DIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLXXXXXXXXXXX 154
D+++ + + GH V + ++VS D +V++W+V
Sbjct: 99 DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC---LKTLPAHS 155
Query: 155 EPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVIS-VRF 211
+P++ AV +G L ++ IW+ Q + + + +S V+F
Sbjct: 156 DPVS---------AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 206
Query: 212 NPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCV--HMG 269
+P +LA T D ++ L+D YS + KC+ + G
Sbjct: 207 SPNGKYILAATL-DNTLKLWD--------------------YS-------KGKCLKTYTG 238
Query: 270 H--ESAVMDIDYSPTGREF-VTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDA 326
H E + ++S TG ++ V+GS D + I+ +++EI + + +C
Sbjct: 239 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL---QTKEIVQKLQGHTDVVISTACHP 295
Query: 327 SYVISGS----DDTNLRLWKA 343
+ I S +D ++LWK+
Sbjct: 296 TENIIASAALENDKTIKLWKS 316
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 269 GHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASY 328
GH AV + +SP G + S D+ I+I+ G+ + ++ + V +S D++
Sbjct: 27 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSDSNL 85
Query: 329 VISGSDDTNLRLWKAKASEQLGVL 352
++S SDD L++W + + L L
Sbjct: 86 LVSASDDKTLKIWDVSSGKCLKTL 109
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/291 (20%), Positives = 117/291 (40%), Gaps = 44/291 (15%)
Query: 62 LDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDG 121
L GH +S + +PN + S S D I++W + + SGH+ + + S+D
Sbjct: 43 LAGHTKAVSSVKFSPNG-EWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 101
Query: 122 RILVSCGTDCTVKLWNVPVATLXXXXXXXXXXXEPLAVYVWKNSFWAVDHQWEGDLFATA 181
+LVS D T+K+W+V N + + + +L +
Sbjct: 102 NLLVSASDDKTLKIWDVSSGKCLKTLKGHS------------NYVFCCNFNPQSNLIVSG 149
Query: 182 G--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPA 239
V IW+ + + + +D V +V FN D S+
Sbjct: 150 SFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN-----------RDGSL----------- 187
Query: 240 RKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQ 299
I+ ++ D C +D+ K + V + +SP G+ + + D T++++
Sbjct: 188 ---IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 244
Query: 300 YNGGRSREIYHTKRMQRVFCV--KFSCDAS-YVISGSDDTNLRLWKAKASE 347
Y+ G+ + Y + ++ +C+ FS +++SGS+D + +W + E
Sbjct: 245 YSKGKCLKTYTGHKNEK-YCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 294
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
Query: 269 GHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASY 328
GH+ + D+ +S V+ S D+T++I+ + G+ + VFC F+ ++
Sbjct: 87 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFNPQSNL 145
Query: 329 VISGSDDTNLRLWKAKASEQLGVLHPREQRKHAYH 363
++SGS D ++R+W K + L L A H
Sbjct: 146 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVH 180
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 71/321 (22%), Positives = 134/321 (41%), Gaps = 63/321 (19%)
Query: 40 EYVRALTAAKLEKIFAR---PFIGALDGHRDGISCMA--KNPNYLKGFFSGSMDGDIRLW 94
E++ + +A KL KI+ F + GH+ GIS +A + N L S S D +++W
Sbjct: 60 EWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL---VSASDDKTLKIW 116
Query: 95 DIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLXXXXXXXXXXX 154
D+++ + + GH V + ++VS D +V++W+V
Sbjct: 117 DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC---LKTLPAHS 173
Query: 155 EPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVIS-VRF 211
+P++ AV +G L ++ IW+ Q + + + +S V+F
Sbjct: 174 DPVS---------AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 224
Query: 212 NPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCV--HMG 269
+P +LA T D ++ L+D YS + KC+ + G
Sbjct: 225 SPNGKYILAATL-DNTLKLWD--------------------YS-------KGKCLKTYTG 256
Query: 270 H--ESAVMDIDYSPTGREF-VTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDA 326
H E + ++S TG ++ V+GS D + I+ +++EI + + +C
Sbjct: 257 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL---QTKEIVQKLQGHTDVVISTACHP 313
Query: 327 SYVISGS----DDTNLRLWKA 343
+ I S +D ++LWK+
Sbjct: 314 TENIIASAALENDKTIKLWKS 334
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 269 GHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASY 328
GH AV + +SP G + S D+ I+I+ G+ + ++ + V +S D++
Sbjct: 45 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSDSNL 103
Query: 329 VISGSDDTNLRLWKAKASEQLGVL 352
++S SDD L++W + + L L
Sbjct: 104 LVSASDDKTLKIWDVSSGKCLKTL 127
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/265 (19%), Positives = 110/265 (41%), Gaps = 37/265 (13%)
Query: 106 SGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLXXXXXXXXXXXEPLAVYVWKNS 165
+GH AV + S +G L S D +K+W +A
Sbjct: 23 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA------- 75
Query: 166 FWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTA 223
W+ D +L +A + IW+ + + + + + ++ V FNP + N++ + +
Sbjct: 76 -WSSD----SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGS 129
Query: 224 SDRSITLYDLRM----------SSPARKV--------IMRANEDCNCYSYDSRKLDEAKC 265
D S+ ++D++ S P V I+ ++ D C +D+ K
Sbjct: 130 FDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 189
Query: 266 VHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCV--KFS 323
+ V + +SP G+ + + D T++++ Y+ G+ + Y + ++ +C+ FS
Sbjct: 190 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK-YCIFANFS 248
Query: 324 CDAS-YVISGSDDTNLRLWKAKASE 347
+++SGS+D + +W + E
Sbjct: 249 VTGGKWIVSGSEDNMVYIWNLQTKE 273
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 1/95 (1%)
Query: 269 GHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASY 328
GH+ + D+ +S V+ S D+T++I+ + G+ + VFC F+ ++
Sbjct: 66 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFNPQSNL 124
Query: 329 VISGSDDTNLRLWKAKASEQLGVLHPREQRKHAYH 363
++SGS D ++R+W K L L A H
Sbjct: 125 IVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVH 159
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 71/321 (22%), Positives = 134/321 (41%), Gaps = 63/321 (19%)
Query: 40 EYVRALTAAKLEKIFAR---PFIGALDGHRDGISCMA--KNPNYLKGFFSGSMDGDIRLW 94
E++ + +A KL KI+ F + GH+ GIS +A + N L S S D +++W
Sbjct: 39 EWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL---VSASDDKTLKIW 95
Query: 95 DIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLXXXXXXXXXXX 154
D+++ + + GH V + ++VS D +V++W+V
Sbjct: 96 DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMC---LKTLPAHS 152
Query: 155 EPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVIS-VRF 211
+P++ AV +G L ++ IW+ Q + + + +S V+F
Sbjct: 153 DPVS---------AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 203
Query: 212 NPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCV--HMG 269
+P +LA T D ++ L+D YS + KC+ + G
Sbjct: 204 SPNGKYILAATL-DNTLKLWD--------------------YS-------KGKCLKTYTG 235
Query: 270 H--ESAVMDIDYSPTGREF-VTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDA 326
H E + ++S TG ++ V+GS D + I+ +++EI + + +C
Sbjct: 236 HKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNL---QTKEIVQKLQGHTDVVISTACHP 292
Query: 327 SYVISGS----DDTNLRLWKA 343
+ I S +D ++LWK+
Sbjct: 293 TENIIASAALENDKTIKLWKS 313
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 269 GHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASY 328
GH AV + +SP G + S D+ I+I+ G+ + ++ + V +S D++
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSDSNL 82
Query: 329 VISGSDDTNLRLWKAKASEQLGVL 352
++S SDD L++W + + L L
Sbjct: 83 LVSASDDKTLKIWDVSSGKCLKTL 106
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/265 (19%), Positives = 110/265 (41%), Gaps = 37/265 (13%)
Query: 106 SGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLXXXXXXXXXXXEPLAVYVWKNS 165
+GH AV + S +G L S D +K+W +A
Sbjct: 26 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA------- 78
Query: 166 FWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTA 223
W+ D +L +A + IW+ + + + + + ++ V FNP + N++ + +
Sbjct: 79 -WSSD----SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGS 132
Query: 224 SDRSITLYDLRM----------SSPARKV--------IMRANEDCNCYSYDSRKLDEAKC 265
D S+ ++D++ S P V I+ ++ D C +D+ K
Sbjct: 133 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 192
Query: 266 VHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCV--KFS 323
+ V + +SP G+ + + D T++++ Y+ G+ + Y + ++ +C+ FS
Sbjct: 193 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK-YCIFANFS 251
Query: 324 CDAS-YVISGSDDTNLRLWKAKASE 347
+++SGS+D + +W + E
Sbjct: 252 VTGGKWIVSGSEDNLVYIWNLQTKE 276
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
Query: 269 GHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASY 328
GH+ + D+ +S V+ S D+T++I+ + G+ + VFC F+ ++
Sbjct: 69 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFNPQSNL 127
Query: 329 VISGSDDTNLRLWKAKASEQLGVLHPREQRKHAYH 363
++SGS D ++R+W K + L L A H
Sbjct: 128 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVH 162
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 71/321 (22%), Positives = 134/321 (41%), Gaps = 63/321 (19%)
Query: 40 EYVRALTAAKLEKIFAR---PFIGALDGHRDGISCMA--KNPNYLKGFFSGSMDGDIRLW 94
E++ + +A KL KI+ F + GH+ GIS +A + N L S S D +++W
Sbjct: 42 EWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL---VSASDDKTLKIW 98
Query: 95 DIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLXXXXXXXXXXX 154
D+++ + + GH V + ++VS D +V++W+V
Sbjct: 99 DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC---LKTLPAHS 155
Query: 155 EPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVIS-VRF 211
+P++ AV +G L ++ IW+ Q + + + +S V+F
Sbjct: 156 DPVS---------AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 206
Query: 212 NPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCV--HMG 269
+P +LA T D ++ L+D YS + KC+ + G
Sbjct: 207 SPNGKYILAATL-DNTLKLWD--------------------YS-------KGKCLKTYTG 238
Query: 270 H--ESAVMDIDYSPTGREF-VTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDA 326
H E + ++S TG ++ V+GS D + I+ +++EI + + +C
Sbjct: 239 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL---QTKEIVQKLQGHTDVVISTACHP 295
Query: 327 SYVISGS----DDTNLRLWKA 343
+ I S +D ++LWK+
Sbjct: 296 TENIIASAALENDKTIKLWKS 316
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 269 GHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASY 328
GH AV + +SP G + S D+ I+I+ G+ + ++ + V +S D++
Sbjct: 27 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSDSNL 85
Query: 329 VISGSDDTNLRLWKAKASEQLGVL 352
++S SDD L++W + + L L
Sbjct: 86 LVSASDDKTLKIWDVSSGKCLKTL 109
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/265 (19%), Positives = 110/265 (41%), Gaps = 37/265 (13%)
Query: 106 SGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLXXXXXXXXXXXEPLAVYVWKNS 165
+GH AV + S +G L S D +K+W +A
Sbjct: 37 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA------- 89
Query: 166 FWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTA 223
W+ D +L +A + IW+ + + + + + ++ V FNP + N++ + +
Sbjct: 90 -WSSD----SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGS 143
Query: 224 SDRSITLYDLRM----------SSPARKV--------IMRANEDCNCYSYDSRKLDEAKC 265
D S+ ++D++ S P V I+ ++ D C +D+ K
Sbjct: 144 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 203
Query: 266 VHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCV--KFS 323
+ V + +SP G+ + + D T++++ Y+ G+ + Y + ++ +C+ FS
Sbjct: 204 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK-YCIFANFS 262
Query: 324 CDAS-YVISGSDDTNLRLWKAKASE 347
+++SGS+D + +W + E
Sbjct: 263 VTGGKWIVSGSEDNLVYIWNLQTKE 287
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
Query: 269 GHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASY 328
GH+ + D+ +S V+ S D+T++I+ + G+ + VFC F+ ++
Sbjct: 80 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFNPQSNL 138
Query: 329 VISGSDDTNLRLWKAKASEQLGVLHPREQRKHAYH 363
++SGS D ++R+W K + L L A H
Sbjct: 139 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVH 173
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 71/321 (22%), Positives = 134/321 (41%), Gaps = 63/321 (19%)
Query: 40 EYVRALTAAKLEKIFAR---PFIGALDGHRDGISCMA--KNPNYLKGFFSGSMDGDIRLW 94
E++ + +A KL KI+ F + GH+ GIS +A + N L S S D +++W
Sbjct: 53 EWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL---VSASDDKTLKIW 109
Query: 95 DIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLXXXXXXXXXXX 154
D+++ + + GH V + ++VS D +V++W+V
Sbjct: 110 DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC---LKTLPAHS 166
Query: 155 EPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVIS-VRF 211
+P++ AV +G L ++ IW+ Q + + + +S V+F
Sbjct: 167 DPVS---------AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 217
Query: 212 NPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCV--HMG 269
+P +LA T D ++ L+D YS + KC+ + G
Sbjct: 218 SPNGKYILAATL-DNTLKLWD--------------------YS-------KGKCLKTYTG 249
Query: 270 H--ESAVMDIDYSPTGREF-VTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDA 326
H E + ++S TG ++ V+GS D + I+ +++EI + + +C
Sbjct: 250 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL---QTKEIVQKLQGHTDVVISTACHP 306
Query: 327 SYVISGS----DDTNLRLWKA 343
+ I S +D ++LWK+
Sbjct: 307 TENIIASAALENDKTIKLWKS 327
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 269 GHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASY 328
GH AV + +SP G + S D+ I+I+ G+ + ++ + V +S D++
Sbjct: 38 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSDSNL 96
Query: 329 VISGSDDTNLRLWKAKASEQLGVL 352
++S SDD L++W + + L L
Sbjct: 97 LVSASDDKTLKIWDVSSGKCLKTL 120
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/265 (19%), Positives = 110/265 (41%), Gaps = 37/265 (13%)
Query: 106 SGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLXXXXXXXXXXXEPLAVYVWKNS 165
+GH AV + S +G L S D +K+W +A
Sbjct: 21 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA------- 73
Query: 166 FWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTA 223
W+ D +L +A + IW+ + + + + + ++ V FNP + N++ + +
Sbjct: 74 -WSSD----SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGS 127
Query: 224 SDRSITLYDLRM----------SSPARKV--------IMRANEDCNCYSYDSRKLDEAKC 265
D S+ ++D++ S P V I+ ++ D C +D+ K
Sbjct: 128 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 187
Query: 266 VHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCV--KFS 323
+ V + +SP G+ + + D T++++ Y+ G+ + Y + ++ +C+ FS
Sbjct: 188 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK-YCIFANFS 246
Query: 324 CDAS-YVISGSDDTNLRLWKAKASE 347
+++SGS+D + +W + E
Sbjct: 247 VTGGKWIVSGSEDNLVYIWNLQTKE 271
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
Query: 269 GHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASY 328
GH+ + D+ +S V+ S D+T++I+ + G+ + VFC F+ ++
Sbjct: 64 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFNPQSNL 122
Query: 329 VISGSDDTNLRLWKAKASEQLGVLHPREQRKHAYH 363
++SGS D ++R+W K + L L A H
Sbjct: 123 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVH 157
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 71/321 (22%), Positives = 134/321 (41%), Gaps = 63/321 (19%)
Query: 40 EYVRALTAAKLEKIFAR---PFIGALDGHRDGISCMA--KNPNYLKGFFSGSMDGDIRLW 94
E++ + +A KL KI+ F + GH+ GIS +A + N L S S D +++W
Sbjct: 37 EWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL---VSASDDKTLKIW 93
Query: 95 DIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLXXXXXXXXXXX 154
D+++ + + GH V + ++VS D +V++W+V
Sbjct: 94 DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC---LKTLPAHS 150
Query: 155 EPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVIS-VRF 211
+P++ AV +G L ++ IW+ Q + + + +S V+F
Sbjct: 151 DPVS---------AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 201
Query: 212 NPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCV--HMG 269
+P +LA T D ++ L+D YS + KC+ + G
Sbjct: 202 SPNGKYILAATL-DNTLKLWD--------------------YS-------KGKCLKTYTG 233
Query: 270 H--ESAVMDIDYSPTGREF-VTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDA 326
H E + ++S TG ++ V+GS D + I+ +++EI + + +C
Sbjct: 234 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL---QTKEIVQKLQGHTDVVISTACHP 290
Query: 327 SYVISGS----DDTNLRLWKA 343
+ I S +D ++LWK+
Sbjct: 291 TENIIASAALENDKTIKLWKS 311
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 269 GHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASY 328
GH AV + +SP G + S D+ I+I+ G+ + ++ + V +S D++
Sbjct: 22 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSDSNL 80
Query: 329 VISGSDDTNLRLWKAKASEQLGVL 352
++S SDD L++W + + L L
Sbjct: 81 LVSASDDKTLKIWDVSSGKCLKTL 104
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/265 (19%), Positives = 110/265 (41%), Gaps = 37/265 (13%)
Query: 106 SGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLXXXXXXXXXXXEPLAVYVWKNS 165
+GH AV + S +G L S D +K+W +A
Sbjct: 23 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA------- 75
Query: 166 FWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTA 223
W+ D +L +A + IW+ + + + + + ++ V FNP + N++ + +
Sbjct: 76 -WSSD----SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGS 129
Query: 224 SDRSITLYDLRM----------SSPARKV--------IMRANEDCNCYSYDSRKLDEAKC 265
D S+ ++D++ S P V I+ ++ D C +D+ K
Sbjct: 130 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 189
Query: 266 VHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCV--KFS 323
+ V + +SP G+ + + D T++++ Y+ G+ + Y + ++ +C+ FS
Sbjct: 190 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK-YCIFANFS 248
Query: 324 CDAS-YVISGSDDTNLRLWKAKASE 347
+++SGS+D + +W + E
Sbjct: 249 VTGGKWIVSGSEDNLVYIWNLQTKE 273
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
Query: 269 GHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASY 328
GH+ + D+ +S V+ S D+T++I+ + G+ + VFC F+ ++
Sbjct: 66 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFNPQSNL 124
Query: 329 VISGSDDTNLRLWKAKASEQLGVLHPREQRKHAYH 363
++SGS D ++R+W K + L L A H
Sbjct: 125 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVH 159
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 50/221 (22%), Positives = 87/221 (39%), Gaps = 40/221 (18%)
Query: 49 KLEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGH 108
K+ + + + L GH + + C NP SGS D +R+WD+ + + H
Sbjct: 93 KIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAH 151
Query: 109 QGAVRGLTVSTDGRILVSCGTDCTVKLW---------------NVPVATLXXXXXXXXXX 153
V + + DG ++VS D ++W N PV+ +
Sbjct: 152 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 211
Query: 154 XEPL--AVYVW--------------KNSFWAV--DHQWEGDLFATAGAQ---VDIWNHNR 192
L + +W KN + + + G + +G++ V IWN
Sbjct: 212 AATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT 271
Query: 193 SQPINSFQWGTDTVISVRFNPAEPNVLATTA--SDRSITLY 231
+ + Q TD VIS +P E N++A+ A +D++I LY
Sbjct: 272 KEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLY 311
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 269 GHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASY 328
GH AV + +SP G + S D+ I+I+ G+ + ++ + V +S D++
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSDSNL 82
Query: 329 VISGSDDTNLRLWKAKASEQLGVL 352
++S SDD L++W + + L L
Sbjct: 83 LVSASDDKTLKIWDVSSGKCLKTL 106
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 70/321 (21%), Positives = 134/321 (41%), Gaps = 63/321 (19%)
Query: 40 EYVRALTAAKLEKIFAR---PFIGALDGHRDGISCMA--KNPNYLKGFFSGSMDGDIRLW 94
E++ + +A KL KI+ F + GH+ GIS +A + N L S S D +++W
Sbjct: 39 EWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL---VSASDDKTLKIW 95
Query: 95 DIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLXXXXXXXXXXX 154
D+++ + + GH V + ++VS D +V++W+V
Sbjct: 96 DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC---LKTLPAHS 152
Query: 155 EPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVIS-VRF 211
+P++ AV +G L ++ IW+ Q + + + +S V+F
Sbjct: 153 DPVS---------AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 203
Query: 212 NPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCV--HMG 269
+P +LA T D ++ L+D YS + KC+ + G
Sbjct: 204 SPNGKYILAATL-DNTLKLWD--------------------YS-------KGKCLKTYTG 235
Query: 270 H--ESAVMDIDYSPTGREF-VTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDA 326
H E + ++S TG ++ V+GS D + I+ +++EI + + +C
Sbjct: 236 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL---QTKEIVQKLQGHTDVVISTACHP 292
Query: 327 SYVISGS----DDTNLRLWKA 343
+ I S +D ++L+K+
Sbjct: 293 TENIIASAALENDKTIKLYKS 313
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/265 (19%), Positives = 110/265 (41%), Gaps = 37/265 (13%)
Query: 106 SGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLXXXXXXXXXXXEPLAVYVWKNS 165
+GH AV + S +G L S D +K+W +A
Sbjct: 20 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA------- 72
Query: 166 FWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTA 223
W+ D +L +A + IW+ + + + + + ++ V FNP + N++ + +
Sbjct: 73 -WSSD----SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGS 126
Query: 224 SDRSITLYDLRM----------SSPARKV--------IMRANEDCNCYSYDSRKLDEAKC 265
D S+ ++D++ S P V I+ ++ D C +D+ K
Sbjct: 127 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 186
Query: 266 VHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCV--KFS 323
+ V + +SP G+ + + D T++++ Y+ G+ + Y + ++ +C+ FS
Sbjct: 187 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK-YCIFANFS 245
Query: 324 CDAS-YVISGSDDTNLRLWKAKASE 347
+++SGS+D + +W + E
Sbjct: 246 VTGGKWIVSGSEDNLVYIWNLQTKE 270
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
Query: 269 GHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASY 328
GH+ + D+ +S V+ S D+T++I+ + G+ + VFC F+ ++
Sbjct: 63 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFNPQSNL 121
Query: 329 VISGSDDTNLRLWKAKASEQLGVLHPREQRKHAYH 363
++SGS D ++R+W K + L L A H
Sbjct: 122 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVH 156
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 71/321 (22%), Positives = 134/321 (41%), Gaps = 63/321 (19%)
Query: 40 EYVRALTAAKLEKIFAR---PFIGALDGHRDGISCMA--KNPNYLKGFFSGSMDGDIRLW 94
E++ + +A KL KI+ F + GH+ GIS +A + N L S S D +++W
Sbjct: 36 EWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL---VSASDDKTLKIW 92
Query: 95 DIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLXXXXXXXXXXX 154
D+++ + + GH V + ++VS D +V++W+V
Sbjct: 93 DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC---LKTLPAHS 149
Query: 155 EPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVIS-VRF 211
+P++ AV +G L ++ IW+ Q + + + +S V+F
Sbjct: 150 DPVS---------AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 200
Query: 212 NPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCV--HMG 269
+P +LA T D ++ L+D YS + KC+ + G
Sbjct: 201 SPNGKYILAATL-DNTLKLWD--------------------YS-------KGKCLKTYTG 232
Query: 270 H--ESAVMDIDYSPTGREF-VTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDA 326
H E + ++S TG ++ V+GS D + I+ +++EI + + +C
Sbjct: 233 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL---QTKEIVQKLQGHTDVVISTACHP 289
Query: 327 SYVISGS----DDTNLRLWKA 343
+ I S +D ++LWK+
Sbjct: 290 TENIIASAALENDKTIKLWKS 310
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 269 GHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASY 328
GH AV + +SP G + S D+ I+I+ G+ + ++ + V +S D++
Sbjct: 21 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSDSNL 79
Query: 329 VISGSDDTNLRLWKAKASEQLGVL 352
++S SDD L++W + + L L
Sbjct: 80 LVSASDDKTLKIWDVSSGKCLKTL 103
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/265 (19%), Positives = 110/265 (41%), Gaps = 37/265 (13%)
Query: 106 SGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLXXXXXXXXXXXEPLAVYVWKNS 165
+GH AV + S +G L S D +K+W +A
Sbjct: 25 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA------- 77
Query: 166 FWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTA 223
W+ D +L +A + IW+ + + + + + ++ V FNP + N++ + +
Sbjct: 78 -WSSD----SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGS 131
Query: 224 SDRSITLYDLRM----------SSPARKV--------IMRANEDCNCYSYDSRKLDEAKC 265
D S+ ++D++ S P V I+ ++ D C +D+ K
Sbjct: 132 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 191
Query: 266 VHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCV--KFS 323
+ V + +SP G+ + + D T++++ Y+ G+ + Y + ++ +C+ FS
Sbjct: 192 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK-YCIFANFS 250
Query: 324 CDAS-YVISGSDDTNLRLWKAKASE 347
+++SGS+D + +W + E
Sbjct: 251 VTGGKWIVSGSEDNLVYIWNLQTKE 275
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
Query: 269 GHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASY 328
GH+ + D+ +S V+ S D+T++I+ + G+ + VFC F+ ++
Sbjct: 68 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFNPQSNL 126
Query: 329 VISGSDDTNLRLWKAKASEQLGVLHPREQRKHAYH 363
++SGS D ++R+W K + L L A H
Sbjct: 127 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVH 161
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 71/321 (22%), Positives = 134/321 (41%), Gaps = 63/321 (19%)
Query: 40 EYVRALTAAKLEKIFAR---PFIGALDGHRDGISCMA--KNPNYLKGFFSGSMDGDIRLW 94
E++ + +A KL KI+ F + GH+ GIS +A + N L S S D +++W
Sbjct: 41 EWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL---VSASDDKTLKIW 97
Query: 95 DIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLXXXXXXXXXXX 154
D+++ + + GH V + ++VS D +V++W+V
Sbjct: 98 DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC---LKTLPAHS 154
Query: 155 EPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVIS-VRF 211
+P++ AV +G L ++ IW+ Q + + + +S V+F
Sbjct: 155 DPVS---------AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 205
Query: 212 NPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCV--HMG 269
+P +LA T D ++ L+D YS + KC+ + G
Sbjct: 206 SPNGKYILAATL-DNTLKLWD--------------------YS-------KGKCLKTYTG 237
Query: 270 H--ESAVMDIDYSPTGREF-VTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDA 326
H E + ++S TG ++ V+GS D + I+ +++EI + + +C
Sbjct: 238 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL---QTKEIVQKLQGHTDVVISTACHP 294
Query: 327 SYVISGS----DDTNLRLWKA 343
+ I S +D ++LWK+
Sbjct: 295 TENIIASAALENDKTIKLWKS 315
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 269 GHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASY 328
GH AV + +SP G + S D+ I+I+ G+ + ++ + V +S D++
Sbjct: 26 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSDSNL 84
Query: 329 VISGSDDTNLRLWKAKASEQLGVL 352
++S SDD L++W + + L L
Sbjct: 85 LVSASDDKTLKIWDVSSGKCLKTL 108
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/265 (19%), Positives = 110/265 (41%), Gaps = 37/265 (13%)
Query: 106 SGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLXXXXXXXXXXXEPLAVYVWKNS 165
+GH AV + S +G L S D +K+W +A
Sbjct: 23 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA------- 75
Query: 166 FWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTA 223
W+ D +L +A + IW+ + + + + + ++ V FNP + N++ + +
Sbjct: 76 -WSSDS----NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGS 129
Query: 224 SDRSITLYDLRM----------SSPARKV--------IMRANEDCNCYSYDSRKLDEAKC 265
D S+ ++D++ S P V I+ ++ D C +D+ K
Sbjct: 130 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 189
Query: 266 VHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCV--KFS 323
+ V + +SP G+ + + D T++++ Y+ G+ + Y + ++ +C+ FS
Sbjct: 190 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK-YCIFANFS 248
Query: 324 CDAS-YVISGSDDTNLRLWKAKASE 347
+++SGS+D + +W + E
Sbjct: 249 VTGGKWIVSGSEDNLVYIWNLQTKE 273
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
Query: 269 GHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASY 328
GH+ + D+ +S V+ S D+T++I+ + G+ + VFC F+ ++
Sbjct: 66 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFNPQSNL 124
Query: 329 VISGSDDTNLRLWKAKASEQLGVLHPREQRKHAYH 363
++SGS D ++R+W K + L L A H
Sbjct: 125 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVH 159
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 269 GHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASY 328
GH AV + +SP G + S D+ I+I+ G+ + ++ + V +S D++
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSDSNL 82
Query: 329 VISGSDDTNLRLWKAKASEQLGVL 352
++S SDD L++W + + L L
Sbjct: 83 LVSASDDKTLKIWDVSSGKCLKTL 106
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 82/208 (39%), Gaps = 40/208 (19%)
Query: 62 LDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDG 121
L GH + + C NP SGS D +R+WD+ + + H V + + DG
Sbjct: 106 LKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDG 164
Query: 122 RILVSCGTDCTVKLW---------------NVPVATLXXXXXXXXXXXEPL--AVYVW-- 162
++VS D ++W N PV+ + L + +W
Sbjct: 165 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 224
Query: 163 ------------KNSFWAV--DHQWEGDLFATAGAQ---VDIWNHNRSQPINSFQWGTDT 205
KN + + + G + +G++ V IWN + + Q TD
Sbjct: 225 SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 284
Query: 206 VISVRFNPAEPNVLATTA--SDRSITLY 231
VIS +P E N++A+ A +D++I L+
Sbjct: 285 VISTACHPTE-NIIASAALENDKTIKLF 311
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 62/291 (21%), Positives = 118/291 (40%), Gaps = 48/291 (16%)
Query: 40 EYVRALTAAKLEKIFAR---PFIGALDGHRDGISCMA--KNPNYLKGFFSGSMDGDIRLW 94
E++ + +A KL KI+ F + GH+ GIS +A + N L S S D +++W
Sbjct: 39 EWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL---VSASDDKTLKIW 95
Query: 95 DIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLXXXXXXXXXXX 154
D+++ + + GH V + ++VS D +V++W+V
Sbjct: 96 DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC---LKTLPAHS 152
Query: 155 EPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVIS-VRF 211
+P++ AV +G L ++ IW+ Q + + + +S V+F
Sbjct: 153 DPVS---------AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 203
Query: 212 NPAEPNVLATTASDRSITLYDL---------------------RMSSPARKVIMRANEDC 250
+P +LA T D ++ L+D S K I+ +ED
Sbjct: 204 SPNGKYILAATL-DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 262
Query: 251 NCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSY--DRTIRIFQ 299
Y ++ + + + + GH V+ PT + + D+TI++F+
Sbjct: 263 LVYIWNLQTKEIVQKLQ-GHTDVVISTACHPTENIIASAALENDKTIKLFK 312
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/265 (19%), Positives = 110/265 (41%), Gaps = 37/265 (13%)
Query: 106 SGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLXXXXXXXXXXXEPLAVYVWKNS 165
+GH AV + S +G L S D +K+W +A
Sbjct: 20 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA------- 72
Query: 166 FWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTA 223
W+ D +L +A + IW+ + + + + + ++ V FNP + N++ + +
Sbjct: 73 -WSSD----SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGS 126
Query: 224 SDRSITLYDLRM----------SSPARKV--------IMRANEDCNCYSYDSRKLDEAKC 265
D S+ ++D++ S P V I+ ++ D C +D+ K
Sbjct: 127 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 186
Query: 266 VHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCV--KFS 323
+ V + +SP G+ + + D T++++ Y+ G+ + Y + ++ +C+ FS
Sbjct: 187 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK-YCIFANFS 245
Query: 324 CDAS-YVISGSDDTNLRLWKAKASE 347
+++SGS+D + +W + E
Sbjct: 246 VTGGKWIVSGSEDNLVYIWNLQTKE 270
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
Query: 269 GHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASY 328
GH+ + D+ +S V+ S D+T++I+ + G+ + VFC F+ ++
Sbjct: 63 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFNPQSNL 121
Query: 329 VISGSDDTNLRLWKAKASEQLGVLHPREQRKHAYH 363
++SGS D ++R+W K + L L A H
Sbjct: 122 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVH 156
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 71/321 (22%), Positives = 134/321 (41%), Gaps = 63/321 (19%)
Query: 40 EYVRALTAAKLEKIFAR---PFIGALDGHRDGISCMA--KNPNYLKGFFSGSMDGDIRLW 94
E++ + +A KL KI+ F + GH+ GIS +A + N L S S D +++W
Sbjct: 36 EWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL---VSASDDKTLKIW 92
Query: 95 DIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLXXXXXXXXXXX 154
D+++ + + GH V + ++VS D +V++W+V
Sbjct: 93 DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC---LKTLPAHS 149
Query: 155 EPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVIS-VRF 211
+P++ AV +G L ++ IW+ Q + + + +S V+F
Sbjct: 150 DPVS---------AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 200
Query: 212 NPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCV--HMG 269
+P +LA T D ++ L+D YS + KC+ + G
Sbjct: 201 SPNGKYILAATL-DNTLKLWD--------------------YS-------KGKCLKTYTG 232
Query: 270 H--ESAVMDIDYSPTGREF-VTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDA 326
H E + ++S TG ++ V+GS D + I+ +++EI + + +C
Sbjct: 233 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL---QTKEIVQKLQGHTDVVISTACHP 289
Query: 327 SYVISGS----DDTNLRLWKA 343
+ I S +D ++LWK+
Sbjct: 290 TENIIASAALENDKTIKLWKS 310
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 269 GHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASY 328
GH AV + +SP G + S D+ I+I+ G+ + ++ + V +S D++
Sbjct: 21 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSDSNL 79
Query: 329 VISGSDDTNLRLWKAKASEQLGVL 352
++S SDD L++W + + L L
Sbjct: 80 LVSASDDKTLKIWDVSSGKCLKTL 103
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/265 (19%), Positives = 110/265 (41%), Gaps = 37/265 (13%)
Query: 106 SGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLXXXXXXXXXXXEPLAVYVWKNS 165
+GH AV + S +G L S D +K+W +A
Sbjct: 19 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA------- 71
Query: 166 FWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTA 223
W+ D +L +A + IW+ + + + + + ++ V FNP + N++ + +
Sbjct: 72 -WSSD----SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGS 125
Query: 224 SDRSITLYDLRM----------SSPARKV--------IMRANEDCNCYSYDSRKLDEAKC 265
D S+ ++D++ S P V I+ ++ D C +D+ K
Sbjct: 126 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 185
Query: 266 VHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCV--KFS 323
+ V + +SP G+ + + D T++++ Y+ G+ + Y + ++ +C+ FS
Sbjct: 186 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK-YCIFANFS 244
Query: 324 CDAS-YVISGSDDTNLRLWKAKASE 347
+++SGS+D + +W + E
Sbjct: 245 VTGGKWIVSGSEDNLVYIWNLQTKE 269
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
Query: 269 GHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASY 328
GH+ + D+ +S V+ S D+T++I+ + G+ + VFC F+ ++
Sbjct: 62 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFNPQSNL 120
Query: 329 VISGSDDTNLRLWKAKASEQLGVLHPREQRKHAYH 363
++SGS D ++R+W K + L L A H
Sbjct: 121 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVH 155
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 71/321 (22%), Positives = 134/321 (41%), Gaps = 63/321 (19%)
Query: 40 EYVRALTAAKLEKIFAR---PFIGALDGHRDGISCMA--KNPNYLKGFFSGSMDGDIRLW 94
E++ + +A KL KI+ F + GH+ GIS +A + N L S S D +++W
Sbjct: 35 EWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL---VSASDDKTLKIW 91
Query: 95 DIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLXXXXXXXXXXX 154
D+++ + + GH V + ++VS D +V++W+V
Sbjct: 92 DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC---LKTLPAHS 148
Query: 155 EPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVIS-VRF 211
+P++ AV +G L ++ IW+ Q + + + +S V+F
Sbjct: 149 DPVS---------AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 199
Query: 212 NPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCV--HMG 269
+P +LA T D ++ L+D YS + KC+ + G
Sbjct: 200 SPNGKYILAATL-DNTLKLWD--------------------YS-------KGKCLKTYTG 231
Query: 270 H--ESAVMDIDYSPTGREF-VTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDA 326
H E + ++S TG ++ V+GS D + I+ +++EI + + +C
Sbjct: 232 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL---QTKEIVQKLQGHTDVVISTACHP 288
Query: 327 SYVISGS----DDTNLRLWKA 343
+ I S +D ++LWK+
Sbjct: 289 TENIIASAALENDKTIKLWKS 309
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 269 GHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASY 328
GH AV + +SP G + S D+ I+I+ G+ + ++ + V +S D++
Sbjct: 20 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSDSNL 78
Query: 329 VISGSDDTNLRLWKAKASEQLGVL 352
++S SDD L++W + + L L
Sbjct: 79 LVSASDDKTLKIWDVSSGKCLKTL 102
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/265 (19%), Positives = 110/265 (41%), Gaps = 37/265 (13%)
Query: 106 SGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLXXXXXXXXXXXEPLAVYVWKNS 165
+GH AV + S +G L S D +K+W +A
Sbjct: 26 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA------- 78
Query: 166 FWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTA 223
W+ D +L +A + IW+ + + + + + ++ V FNP + N++ + +
Sbjct: 79 -WSSD----SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGS 132
Query: 224 SDRSITLYDLRM----------SSPARKV--------IMRANEDCNCYSYDSRKLDEAKC 265
D S+ ++D++ S P V I+ ++ D C +D+ K
Sbjct: 133 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 192
Query: 266 VHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCV--KFS 323
+ V + +SP G+ + + D T++++ Y+ G+ + Y + ++ +C+ FS
Sbjct: 193 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK-YCIFANFS 251
Query: 324 CDAS-YVISGSDDTNLRLWKAKASE 347
+++SGS+D + +W + E
Sbjct: 252 VTGGKWIVSGSEDNLVYIWNLQTKE 276
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
Query: 269 GHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASY 328
GH+ + D+ +S V+ S D+T++I+ + G+ + VFC F+ ++
Sbjct: 69 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFNPQSNL 127
Query: 329 VISGSDDTNLRLWKAKASEQLGVLHPREQRKHAYH 363
++SGS D ++R+W K + L L A H
Sbjct: 128 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVH 162
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 71/321 (22%), Positives = 134/321 (41%), Gaps = 63/321 (19%)
Query: 40 EYVRALTAAKLEKIFAR---PFIGALDGHRDGISCMA--KNPNYLKGFFSGSMDGDIRLW 94
E++ + +A KL KI+ F + GH+ GIS +A + N L S S D +++W
Sbjct: 42 EWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL---VSASDDKTLKIW 98
Query: 95 DIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLXXXXXXXXXXX 154
D+++ + + GH V + ++VS D +V++W+V
Sbjct: 99 DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC---LKTLPAHS 155
Query: 155 EPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVIS-VRF 211
+P++ AV +G L ++ IW+ Q + + + +S V+F
Sbjct: 156 DPVS---------AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 206
Query: 212 NPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCV--HMG 269
+P +LA T D ++ L+D YS + KC+ + G
Sbjct: 207 SPNGKYILAATL-DNTLKLWD--------------------YS-------KGKCLKTYTG 238
Query: 270 H--ESAVMDIDYSPTGREF-VTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDA 326
H E + ++S TG ++ V+GS D + I+ +++EI + + +C
Sbjct: 239 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL---QTKEIVQKLQGHTDVVISTACHP 295
Query: 327 SYVISGS----DDTNLRLWKA 343
+ I S +D ++LWK+
Sbjct: 296 TENIIASAALENDKTIKLWKS 316
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 269 GHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASY 328
GH AV + +SP G + S D+ I+I+ G+ + ++ + V +S D++
Sbjct: 27 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSDSNL 85
Query: 329 VISGSDDTNLRLWKAKASEQLGVL 352
++S SDD L++W + + L L
Sbjct: 86 LVSASDDKTLKIWDVSSGKCLKTL 109
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 60/263 (22%), Positives = 94/263 (35%), Gaps = 78/263 (29%)
Query: 85 GSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLX 144
GS D IR+++ V + H +R + V ++S D TVKLWN
Sbjct: 73 GSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN------- 125
Query: 145 XXXXXXXXXXEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTD 204
W+N+ WA++ +EG H
Sbjct: 126 -----------------WENN-WALEQTFEG--------------HEHF----------- 142
Query: 205 TVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAK 264
V+ V FNP +P+ A+ DR++ ++ L S+P +
Sbjct: 143 -VMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT--------------------- 180
Query: 265 CVHMGHESAVMDIDYSPTGRE--FVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKF 322
G E V +DY P + +T S D TI+I+ Y +S M V F
Sbjct: 181 ---TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ-TKSCVATLEGHMSNVSFAVF 236
Query: 323 SCDASYVISGSDDTNLRLWKAKA 345
+ISGS+D L++W +
Sbjct: 237 HPTLPIIISGSEDGTLKIWNSST 259
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/172 (19%), Positives = 71/172 (41%), Gaps = 28/172 (16%)
Query: 184 QVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVI 243
++ ++N+N + + F+ D + S+ +P +P VL+ + D ++ L++ + +
Sbjct: 78 RIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSG-SDDLTVKLWNWENNWALEQTF 136
Query: 244 MRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTG-REFVTGSYDRTIRIFQYNG 302
GHE VM + ++P F +G DRT++++
Sbjct: 137 E------------------------GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ 172
Query: 303 GRSREIYHTKRMQRVFCVKFSC--DASYVISGSDDTNLRLWKAKASEQLGVL 352
T + + V V + D Y+I+ SDD +++W + + L
Sbjct: 173 STPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL 224
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 38/82 (46%), Gaps = 7/82 (8%)
Query: 61 ALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVS-- 118
+GH + C+A NP F SG +D +++W + ++ ++ G RG+
Sbjct: 135 TFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLG--QSTPNFTLTTGQERGVNYVDY 192
Query: 119 ---TDGRILVSCGTDCTVKLWN 137
D +++ D T+K+W+
Sbjct: 193 YPLPDKPYMITASDDLTIKIWD 214
Score = 36.2 bits (82), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 52/139 (37%), Gaps = 27/139 (19%)
Query: 203 TDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDE 262
+D V + F+P EP VL T S R + L++ R + +
Sbjct: 13 SDRVKGIDFHPTEPWVLTTLYSGR-VELWNYETQVEVRSIQVT----------------- 54
Query: 263 AKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKF 322
E+ V + + GS D IR+F YN G + + + +
Sbjct: 55 --------ETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGE-KVVDFEAHPDYIRSIAV 105
Query: 323 SCDASYVISGSDDTNLRLW 341
YV+SGSDD ++LW
Sbjct: 106 HPTKPYVLSGSDDLTVKLW 124
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 24/54 (44%)
Query: 84 SGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWN 137
+ S D I++WD + V GH V I++S D T+K+WN
Sbjct: 203 TASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 60/263 (22%), Positives = 94/263 (35%), Gaps = 78/263 (29%)
Query: 85 GSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLX 144
GS D IR+++ V + H +R + V ++S D TVKLWN
Sbjct: 73 GSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN------- 125
Query: 145 XXXXXXXXXXEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTD 204
W+N+ WA++ +EG H
Sbjct: 126 -----------------WENN-WALEQTFEG--------------HEHF----------- 142
Query: 205 TVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAK 264
V+ V FNP +P+ A+ DR++ ++ L S+P +
Sbjct: 143 -VMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT--------------------- 180
Query: 265 CVHMGHESAVMDIDYSPTGRE--FVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKF 322
G E V +DY P + +T S D TI+I+ Y +S M V F
Sbjct: 181 ---TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ-TKSCVATLEGHMSNVSFAVF 236
Query: 323 SCDASYVISGSDDTNLRLWKAKA 345
+ISGS+D L++W +
Sbjct: 237 HPTLPIIISGSEDGTLKIWNSST 259
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/172 (19%), Positives = 71/172 (41%), Gaps = 28/172 (16%)
Query: 184 QVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVI 243
++ ++N+N + + F+ D + S+ +P +P VL+ + D ++ L++ + +
Sbjct: 78 RIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSG-SDDLTVKLWNWENNWALEQTF 136
Query: 244 MRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTG-REFVTGSYDRTIRIFQYNG 302
GHE VM + ++P F +G DRT++++
Sbjct: 137 E------------------------GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ 172
Query: 303 GRSREIYHTKRMQRVFCVKFSC--DASYVISGSDDTNLRLWKAKASEQLGVL 352
T + + V V + D Y+I+ SDD +++W + + L
Sbjct: 173 STPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL 224
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 38/82 (46%), Gaps = 7/82 (8%)
Query: 61 ALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVS-- 118
+GH + C+A NP F SG +D +++W + ++ ++ G RG+
Sbjct: 135 TFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLG--QSTPNFTLTTGQERGVNYVDY 192
Query: 119 ---TDGRILVSCGTDCTVKLWN 137
D +++ D T+K+W+
Sbjct: 193 YPLPDKPYMITASDDLTIKIWD 214
Score = 36.2 bits (82), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 52/139 (37%), Gaps = 27/139 (19%)
Query: 203 TDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDE 262
+D V + F+P EP VL T S R + L++ R + +
Sbjct: 13 SDRVKGIDFHPTEPWVLTTLYSGR-VELWNYETQVEVRSIQVT----------------- 54
Query: 263 AKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKF 322
E+ V + + GS D IR+F YN G + + + +
Sbjct: 55 --------ETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGE-KVVDFEAHPDYIRSIAV 105
Query: 323 SCDASYVISGSDDTNLRLW 341
YV+SGSDD ++LW
Sbjct: 106 HPTKPYVLSGSDDLTVKLW 124
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 24/54 (44%)
Query: 84 SGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWN 137
+ S D I++WD + V GH V I++S D T+K+WN
Sbjct: 203 TASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 60/261 (22%), Positives = 94/261 (36%), Gaps = 78/261 (29%)
Query: 85 GSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLX 144
GS D IR+++ V + H +R + V ++S D TVKLWN
Sbjct: 73 GSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN------- 125
Query: 145 XXXXXXXXXXEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTD 204
W+N+ WA++ +EG H
Sbjct: 126 -----------------WENN-WALEQTFEG--------------HEH------------ 141
Query: 205 TVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAK 264
V+ V FNP +P+ A+ DR++ ++ L S+P
Sbjct: 142 FVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNF------------------------ 177
Query: 265 CVHMGHESAVMDIDYSPTGRE--FVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKF 322
+ G E V +DY P + +T S D TI+I+ Y +S M V F
Sbjct: 178 TLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ-TKSCVATLEGHMSNVSFAVF 236
Query: 323 SCDASYVISGSDDTNLRLWKA 343
+ISGS+D L++W +
Sbjct: 237 HPTLPIIISGSEDGTLKIWNS 257
Score = 36.2 bits (82), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 11/91 (12%)
Query: 62 LDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVST-- 119
+GH + C+A NP F SG +D +++W + ++ ++ G RG+
Sbjct: 136 FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLG--QSTPNFTLTTGQERGVNYVDYY 193
Query: 120 ---DGRILVSCGTDCTVKLWNVP----VATL 143
D +++ D T+K+W+ VATL
Sbjct: 194 PLPDKPYMITASDDLTIKIWDYQTKSCVATL 224
Score = 35.4 bits (80), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 55/139 (39%), Gaps = 27/139 (19%)
Query: 203 TDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDE 262
+D V + F+P EP VL T S R ++Y+++ E
Sbjct: 13 SDRVKGIDFHPTEPWVLTTLYSGR-----------------------VEIWNYETQV--E 47
Query: 263 AKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKF 322
+ + + E+ V + + GS D IR+F YN G + + + +
Sbjct: 48 VRSIQV-TETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGE-KVVDFEAHPDYIRSIAV 105
Query: 323 SCDASYVISGSDDTNLRLW 341
YV+SGSDD ++LW
Sbjct: 106 HPTKPYVLSGSDDLTVKLW 124
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 24/54 (44%)
Query: 84 SGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWN 137
+ S D I++WD + V GH V I++S D T+K+WN
Sbjct: 203 TASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 66/340 (19%), Positives = 130/340 (38%), Gaps = 56/340 (16%)
Query: 39 VEYVRALTAAKLEKIFARPFIGALDGHRDGI--SCMAKNPNYLKGFFSGSMDGDIRLWDI 96
+E++ T L ++ RP H D + +C +++ + S D ++++
Sbjct: 595 LEWINKKTIKNLSRLVVRP-------HTDAVYHACFSQDGQRIA---SCGADKTLQVFKA 644
Query: 97 ANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLXXXXXXXXXXXEP 156
+ H+ V S+D + +C D VK+W+ L
Sbjct: 645 ETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNC 704
Query: 157 LAVYVWKNSFWAVDHQWEGDLFATAGAQ--VDIWNHNRSQPINSFQWGTDTVISVRFNPA 214
N L AT + +W+ N+ + N+ T++V RF+P
Sbjct: 705 CHFTNKSNHL----------LLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSP- 753
Query: 215 EPNVLATTASDRSITLYDLRMSSPARKVIMR----ANED----------CNCYSYDSRKL 260
+ +LA+ ++D ++ L+D+R ++ + + ++ ++ED C +S D K+
Sbjct: 754 DDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKI 813
Query: 261 DEAKC----------------VHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGR 304
A +H GH S + D+SP V + ++ + R
Sbjct: 814 IVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDS-R 872
Query: 305 SREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAK 344
+ + V V FS D S ++ SDD +R+W+ K
Sbjct: 873 LKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETK 912
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/236 (20%), Positives = 89/236 (37%), Gaps = 39/236 (16%)
Query: 69 ISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCG 128
+SC +P +L+ G DG I++ ++ N R GH+ AVR + + DG+ L+S
Sbjct: 964 VSCCCLSP-HLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSS 1022
Query: 129 TDCTVKLWNVPVATLXXXXXXXXXXXEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIW 188
D +++WN + + + W+ D V +W
Sbjct: 1023 EDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFD------------GTVKVW 1070
Query: 189 NHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANE 248
N + F TV+S + ++ ++T++D++ ++ + SP
Sbjct: 1071 NVITGRIERDFTCHQGTVLSCAIS-SDATKFSSTSADKTAKIWSFDLLSP---------- 1119
Query: 249 DCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGR 304
L E K GH V +S G TG + IRI+ + G+
Sbjct: 1120 -----------LHELK----GHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQ 1160
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 79/369 (21%), Positives = 141/369 (38%), Gaps = 77/369 (20%)
Query: 41 YVRALTAAKLEKIF---ARPFIGALDGHRDGISC--MAKNPNYLKGFFSGSMDGDIRLWD 95
Y+ +A K KI+ + D H + ++C N+L +GS D ++LWD
Sbjct: 671 YIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLL-LATGSNDFFLKLWD 729
Query: 96 IANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVAT------LXXXXXX 149
+ + GH +V S D +L SC D T++LW+V A +
Sbjct: 730 LNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLS 789
Query: 150 XXXXXEPLAVYVWKNSFWAVDHQWEGD-LFATAGAQVDIWNHNRSQPINSFQWGTDTVIS 208
E + V V K W+ D GD + A +V +++ + S + G + I
Sbjct: 790 SEDPPEDVEVIV-KCCSWSAD----GDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQ 844
Query: 209 -VRFNPAEPNVLATTAS--------DRSITLYDLR---------MSSPARKVIMRANEDC 250
F+P + + + D + + D R M SP + A++D
Sbjct: 845 YCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQ 904
Query: 251 NCYSYDSRKL---------DEAKCVHMGHESAVM----------------DIDYSPTGR- 284
++++K+ E V +E+ V+ IDY P +
Sbjct: 905 TIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQV 964
Query: 285 ---------EFVT-GSYDRTIRIFQYNGGR--SREIYHTKRMQRVFCVKFSCDASYVISG 332
E+V G D I+I + R S + H K ++ + +F+ D +IS
Sbjct: 965 SCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHI---QFTADGKTLISS 1021
Query: 333 SDDTNLRLW 341
S+D+ +++W
Sbjct: 1022 SEDSVIQVW 1030
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 45/104 (43%), Gaps = 3/104 (2%)
Query: 270 HESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYV 329
H AV +S G+ + D+T+++F+ G + + V C FS D SY+
Sbjct: 614 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGE-KLLDIKAHEDEVLCCAFSSDDSYI 672
Query: 330 ISGSDDTNLRLWKAKASEQLGVLHPREQRKHAYHEAVKNRYKHL 373
+ S D +++W + + + ++ + H N+ HL
Sbjct: 673 ATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCH--FTNKSNHL 714
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 36/179 (20%), Positives = 77/179 (43%), Gaps = 31/179 (17%)
Query: 174 EGDLFATAGAQ--VDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLY 231
+G A+ GA + ++ + + + D V+ F+ ++ + +AT ++D+ + ++
Sbjct: 626 DGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFS-SDDSYIATCSADKKVKIW 684
Query: 232 DLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSY 291
D S K++ ++YD ++ C H ++S + + TGS
Sbjct: 685 D----SATGKLV---------HTYDEHS-EQVNCCHFTNKSNHLLL---------ATGSN 721
Query: 292 DRTIRIFQYNGGRSREIY--HTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQ 348
D ++++ N R HT + +FS D + S S D LRLW +++ +
Sbjct: 722 DFFLKLWDLNQKECRNTMFGHTNSVNHC---RFSPDDELLASCSADGTLRLWDVRSANE 777
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 50/110 (45%), Gaps = 19/110 (17%)
Query: 46 TAAKLEKIFARPFIG---ALDGHRDGISCMAKNPNYLKGFF--SGSMDGDIRLWDIANRR 100
+A K KI++ + L GH + C A + L G +G +G+IR+W++++ +
Sbjct: 1104 SADKTAKIWSFDLLSPLHELKGHNGCVRCSAFS---LDGILLATGDDNGEIRIWNVSDGQ 1160
Query: 101 TV--CQ-------YSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVA 141
+ C + H G V + S D + LVS G +K WNV
Sbjct: 1161 LLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAGG--YLKWWNVATG 1208
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 37/86 (43%), Gaps = 3/86 (3%)
Query: 270 HESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQR-VFCVKFSCDASY 328
H+ V+ S +F + S D+T +I+ ++ ++ K V C FS D
Sbjct: 1084 HQGTVLSCAISSDATKFSSTSADKTAKIWSFD--LLSPLHELKGHNGCVRCSAFSLDGIL 1141
Query: 329 VISGSDDTNLRLWKAKASEQLGVLHP 354
+ +G D+ +R+W + L P
Sbjct: 1142 LATGDDNGEIRIWNVSDGQLLHSCAP 1167
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 51/265 (19%), Positives = 110/265 (41%), Gaps = 37/265 (13%)
Query: 106 SGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLXXXXXXXXXXXEPLAVYVWKNS 165
+GH AV + S +G L + D +K+W +A
Sbjct: 23 AGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVA------- 75
Query: 166 FWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTA 223
W+ D +L +A + IW+ + + + + + ++ V FNP + N++ + +
Sbjct: 76 -WSSDS----NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGS 129
Query: 224 SDRSITLYDLRM----------SSPARKV--------IMRANEDCNCYSYDSRKLDEAKC 265
D S+ ++D++ S P V I+ ++ D C +D+ K
Sbjct: 130 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 189
Query: 266 VHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCV--KFS 323
+ V + +SP G+ + + D T++++ Y+ G+ + Y + ++ +C+ FS
Sbjct: 190 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK-YCIFANFS 248
Query: 324 CDAS-YVISGSDDTNLRLWKAKASE 347
+++SGS+D + +W + E
Sbjct: 249 VTGGKWIVSGSEDNLVYIWNLQTKE 273
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
Query: 269 GHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASY 328
GH+ + D+ +S V+ S D+T++I+ + G+ + VFC F+ ++
Sbjct: 66 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFNPQSNL 124
Query: 329 VISGSDDTNLRLWKAKASEQLGVLHPREQRKHAYH 363
++SGS D ++R+W K + L L A H
Sbjct: 125 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVH 159
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 72/321 (22%), Positives = 134/321 (41%), Gaps = 63/321 (19%)
Query: 40 EYVRALTAAKLEKIFAR---PFIGALDGHRDGISCMA--KNPNYLKGFFSGSMDGDIRLW 94
E++ A +A KL KI+ F + GH+ GIS +A + N L S S D +++W
Sbjct: 39 EWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL---VSASDDKTLKIW 95
Query: 95 DIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLXXXXXXXXXXX 154
D+++ + + GH V + ++VS D +V++W+V
Sbjct: 96 DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC---LKTLPAHS 152
Query: 155 EPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVIS-VRF 211
+P++ AV +G L ++ IW+ Q + + + +S V+F
Sbjct: 153 DPVS---------AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 203
Query: 212 NPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCV--HMG 269
+P +LA T D ++ L+D YS + KC+ + G
Sbjct: 204 SPNGKYILAATL-DNTLKLWD--------------------YS-------KGKCLKTYTG 235
Query: 270 H--ESAVMDIDYSPTGREF-VTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDA 326
H E + ++S TG ++ V+GS D + I+ +++EI + + +C
Sbjct: 236 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL---QTKEIVQKLQGHTDVVISTACHP 292
Query: 327 SYVISGS----DDTNLRLWKA 343
+ I S +D ++LWK+
Sbjct: 293 TENIIASAALENDKTIKLWKS 313
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 269 GHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASY 328
GH AV + +SP G S D+ I+I+ G+ + ++ + V +S D++
Sbjct: 24 GHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSDSNL 82
Query: 329 VISGSDDTNLRLWKAKASEQLGVL 352
++S SDD L++W + + L L
Sbjct: 83 LVSASDDKTLKIWDVSSGKCLKTL 106
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 66/340 (19%), Positives = 130/340 (38%), Gaps = 56/340 (16%)
Query: 39 VEYVRALTAAKLEKIFARPFIGALDGHRDGI--SCMAKNPNYLKGFFSGSMDGDIRLWDI 96
+E++ T L ++ RP H D + +C +++ + S D ++++
Sbjct: 602 LEWINKKTIKNLSRLVVRP-------HTDAVYHACFSQDGQRIA---SCGADKTLQVFKA 651
Query: 97 ANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLXXXXXXXXXXXEP 156
+ H+ V S+D + +C D VK+W+ L
Sbjct: 652 ETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNC 711
Query: 157 LAVYVWKNSFWAVDHQWEGDLFATAGAQ--VDIWNHNRSQPINSFQWGTDTVISVRFNPA 214
N L AT + +W+ N+ + N+ T++V RF+P
Sbjct: 712 CHFTNKSNHL----------LLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSP- 760
Query: 215 EPNVLATTASDRSITLYDLRMSSPARKVIMR----ANED----------CNCYSYDSRKL 260
+ +LA+ ++D ++ L+D+R ++ + + ++ ++ED C +S D K+
Sbjct: 761 DDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKI 820
Query: 261 DEAKC----------------VHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGR 304
A +H GH S + D+SP V + ++ + R
Sbjct: 821 IVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDS-R 879
Query: 305 SREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAK 344
+ + V V FS D S ++ SDD +R+W+ K
Sbjct: 880 LKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETK 919
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/236 (20%), Positives = 89/236 (37%), Gaps = 39/236 (16%)
Query: 69 ISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCG 128
+SC +P +L+ G DG I++ ++ N R GH+ AVR + + DG+ L+S
Sbjct: 971 VSCCCLSP-HLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSS 1029
Query: 129 TDCTVKLWNVPVATLXXXXXXXXXXXEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIW 188
D +++WN + + + W+ D V +W
Sbjct: 1030 EDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFD------------GTVKVW 1077
Query: 189 NHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANE 248
N + F TV+S + ++ ++T++D++ ++ + SP
Sbjct: 1078 NVITGRIERDFTCHQGTVLSCAIS-SDATKFSSTSADKTAKIWSFDLLSP---------- 1126
Query: 249 DCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGR 304
L E K GH V +S G TG + IRI+ + G+
Sbjct: 1127 -----------LHELK----GHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQ 1167
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 79/369 (21%), Positives = 141/369 (38%), Gaps = 77/369 (20%)
Query: 41 YVRALTAAKLEKIF---ARPFIGALDGHRDGISC--MAKNPNYLKGFFSGSMDGDIRLWD 95
Y+ +A K KI+ + D H + ++C N+L +GS D ++LWD
Sbjct: 678 YIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLL-LATGSNDFFLKLWD 736
Query: 96 IANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVAT------LXXXXXX 149
+ + GH +V S D +L SC D T++LW+V A +
Sbjct: 737 LNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLS 796
Query: 150 XXXXXEPLAVYVWKNSFWAVDHQWEGD-LFATAGAQVDIWNHNRSQPINSFQWGTDTVIS 208
E + V V K W+ D GD + A +V +++ + S + G + I
Sbjct: 797 SEDPPEDVEVIV-KCCSWSAD----GDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQ 851
Query: 209 -VRFNPAEPNVLATTAS--------DRSITLYDLR---------MSSPARKVIMRANEDC 250
F+P + + + D + + D R M SP + A++D
Sbjct: 852 YCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQ 911
Query: 251 NCYSYDSRKL---------DEAKCVHMGHESAVM----------------DIDYSPTGR- 284
++++K+ E V +E+ V+ IDY P +
Sbjct: 912 TIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQV 971
Query: 285 ---------EFVT-GSYDRTIRIFQYNGGR--SREIYHTKRMQRVFCVKFSCDASYVISG 332
E+V G D I+I + R S + H K ++ + +F+ D +IS
Sbjct: 972 SCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHI---QFTADGKTLISS 1028
Query: 333 SDDTNLRLW 341
S+D+ +++W
Sbjct: 1029 SEDSVIQVW 1037
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 45/104 (43%), Gaps = 3/104 (2%)
Query: 270 HESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYV 329
H AV +S G+ + D+T+++F+ G + + V C FS D SY+
Sbjct: 621 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGE-KLLDIKAHEDEVLCCAFSSDDSYI 679
Query: 330 ISGSDDTNLRLWKAKASEQLGVLHPREQRKHAYHEAVKNRYKHL 373
+ S D +++W + + + ++ + H N+ HL
Sbjct: 680 ATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCH--FTNKSNHL 721
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 36/179 (20%), Positives = 77/179 (43%), Gaps = 31/179 (17%)
Query: 174 EGDLFATAGAQ--VDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLY 231
+G A+ GA + ++ + + + D V+ F+ ++ + +AT ++D+ + ++
Sbjct: 633 DGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFS-SDDSYIATCSADKKVKIW 691
Query: 232 DLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSY 291
D S K++ ++YD ++ C H ++S + + TGS
Sbjct: 692 D----SATGKLV---------HTYDEHS-EQVNCCHFTNKSNHLLL---------ATGSN 728
Query: 292 DRTIRIFQYNGGRSREIY--HTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQ 348
D ++++ N R HT + +FS D + S S D LRLW +++ +
Sbjct: 729 DFFLKLWDLNQKECRNTMFGHTNSVNHC---RFSPDDELLASCSADGTLRLWDVRSANE 784
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 50/110 (45%), Gaps = 19/110 (17%)
Query: 46 TAAKLEKIFARPFIG---ALDGHRDGISCMAKNPNYLKGFF--SGSMDGDIRLWDIANRR 100
+A K KI++ + L GH + C A + L G +G +G+IR+W++++ +
Sbjct: 1111 SADKTAKIWSFDLLSPLHELKGHNGCVRCSAFS---LDGILLATGDDNGEIRIWNVSDGQ 1167
Query: 101 TV--CQ-------YSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVA 141
+ C + H G V + S D + LVS G +K WNV
Sbjct: 1168 LLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAGG--YLKWWNVATG 1215
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 37/86 (43%), Gaps = 3/86 (3%)
Query: 270 HESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQR-VFCVKFSCDASY 328
H+ V+ S +F + S D+T +I+ ++ ++ K V C FS D
Sbjct: 1091 HQGTVLSCAISSDATKFSSTSADKTAKIWSFD--LLSPLHELKGHNGCVRCSAFSLDGIL 1148
Query: 329 VISGSDDTNLRLWKAKASEQLGVLHP 354
+ +G D+ +R+W + L P
Sbjct: 1149 LATGDDNGEIRIWNVSDGQLLHSCAP 1174
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 60/261 (22%), Positives = 94/261 (36%), Gaps = 78/261 (29%)
Query: 85 GSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLX 144
GS D IR+++ V + H +R + V ++S D TVKLWN
Sbjct: 73 GSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN------- 125
Query: 145 XXXXXXXXXXEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTD 204
W+N+ WA++ +EG H
Sbjct: 126 -----------------WENN-WALEQTFEG--------------HEH------------ 141
Query: 205 TVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAK 264
V+ V FNP +P+ A+ DR++ ++ L S+P
Sbjct: 142 FVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNF------------------------ 177
Query: 265 CVHMGHESAVMDIDYSPTGRE--FVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKF 322
+ G E V +DY P + +T S D TI+I+ Y +S M V F
Sbjct: 178 TLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ-TKSCVATLEGHMSNVSFAVF 236
Query: 323 SCDASYVISGSDDTNLRLWKA 343
+ISGS+D L++W +
Sbjct: 237 HPTLPIIISGSEDGTLKIWNS 257
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/173 (19%), Positives = 71/173 (41%), Gaps = 28/173 (16%)
Query: 184 QVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVI 243
++ ++N+N + + F+ D + S+ +P +P VL+ + D ++ L++ + +
Sbjct: 78 RIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSG-SDDLTVKLWNWENNWALEQTF 136
Query: 244 MRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTG-REFVTGSYDRTIRIFQYNG 302
GHE VM + ++P F +G DRT++++
Sbjct: 137 E------------------------GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ 172
Query: 303 GRSREIYHTKRMQRVFCVKFSC--DASYVISGSDDTNLRLWKAKASEQLGVLH 353
T + + V V + D Y+I+ SDD +++W + + L
Sbjct: 173 STPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLE 225
Score = 36.2 bits (82), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 38/82 (46%), Gaps = 7/82 (8%)
Query: 61 ALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVST- 119
+GH + C+A NP F SG +D +++W + ++ ++ G RG+
Sbjct: 135 TFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLG--QSTPNFTLTTGQERGVNYVDY 192
Query: 120 ----DGRILVSCGTDCTVKLWN 137
D +++ D T+K+W+
Sbjct: 193 YPLPDKPYMITASDDLTIKIWD 214
Score = 35.8 bits (81), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 52/140 (37%), Gaps = 27/140 (19%)
Query: 203 TDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDE 262
+D V + F+P EP VL T S R + L++ R + +
Sbjct: 13 SDRVKGIDFHPTEPWVLTTLYSGR-VELWNYETQVEVRSIQVT----------------- 54
Query: 263 AKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKF 322
E+ V + + GS D IR+F YN G + + + +
Sbjct: 55 --------ETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGE-KVVDFEAHPDYIRSIAV 105
Query: 323 SCDASYVISGSDDTNLRLWK 342
YV+SGSDD ++LW
Sbjct: 106 HPTKPYVLSGSDDLTVKLWN 125
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 24/54 (44%)
Query: 84 SGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWN 137
+ S D I++WD + V GH V I++S D T+K+WN
Sbjct: 203 TASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 70/165 (42%), Gaps = 24/165 (14%)
Query: 215 EPNVLATTASDRSITLYDLR---------------MS---SPARKVIMRANEDCNCYSYD 256
+ N + T++ D + L+D+ MS +P ++ + D + +D
Sbjct: 153 DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD 212
Query: 257 SRKLDEAKC--VHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIY-HTKR 313
R E C GHES + I + P G F TGS D T R+F + Y H
Sbjct: 213 VR---EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNI 269
Query: 314 MQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLHPREQR 358
+ + V FS +++G DD N +W A +++ GVL + R
Sbjct: 270 ICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNR 314
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/238 (23%), Positives = 92/238 (38%), Gaps = 36/238 (15%)
Query: 62 LDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDG 121
L GH +SC + + S D LWDI + ++GH G V L+++ D
Sbjct: 139 LAGHTGYLSCCRFLDD--NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDT 196
Query: 122 RILVSCGTDCTVKLWNVPVATLXXXXXXXXXXXEPLAVYVWKNSFWAVDHQWEGDLFATA 181
R+ VS D + KLW+V E + + +F + F
Sbjct: 197 RLFVSGACDASAKLWDV---------------REGMC----RQTFTGHESDINAICFFPN 237
Query: 182 GAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARK 241
G N+F G+D F+ L T + D I S + +
Sbjct: 238 G--------------NAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR 283
Query: 242 VIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQ 299
+++ +D NC +D+ K D A V GH++ V + + G TGS+D ++I+
Sbjct: 284 LLLAGYDDFNCNVWDALKADRAG-VLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 56/276 (20%), Positives = 101/276 (36%), Gaps = 47/276 (17%)
Query: 73 AKNPNYLKGFFSGSMDGDIRLWDI----ANRRTVCQYSGHQGAVRGLTVSTDGRILVSCG 128
A + NY+ G +D ++++ N R + +GH G + D +I+ S G
Sbjct: 106 APSGNYVA---CGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG 162
Query: 129 TDCTVKLWNVPVATLXXXXXXXXXXXEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVD 186
D T LW++ L++ A D + LF + A
Sbjct: 163 -DTTCALWDIETGQQTTTFTGHTGDVMSLSL--------APDTR----LFVSGACDASAK 209
Query: 187 IWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRA 246
+W+ +F + ++ F P N AT + D + L+DLR A
Sbjct: 210 LWDVREGMCRQTFTGHESDINAICFFP-NGNAFATGSDDATCRLFDLR-----------A 257
Query: 247 NEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSR 306
+++ YS+D+ + + +S +GR + G D ++ R
Sbjct: 258 DQELMTYSHDNII------------CGITSVSFSKSGRLLLAGYDDFNCNVWDALKA-DR 304
Query: 307 EIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWK 342
RV C+ + D V +GS D+ L++W
Sbjct: 305 AGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 70/165 (42%), Gaps = 24/165 (14%)
Query: 215 EPNVLATTASDRSITLYDLR---------------MS---SPARKVIMRANEDCNCYSYD 256
+ N + T++ D + L+D+ MS +P ++ + D + +D
Sbjct: 153 DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD 212
Query: 257 SRKLDEAKC--VHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIY-HTKR 313
R E C GHES + I + P G F TGS D T R+F + Y H
Sbjct: 213 VR---EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNI 269
Query: 314 MQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLHPREQR 358
+ + V FS +++G DD N +W A +++ GVL + R
Sbjct: 270 ICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNR 314
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/238 (22%), Positives = 88/238 (36%), Gaps = 36/238 (15%)
Query: 62 LDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDG 121
L GH +SC + + S D LWDI + ++GH G V L+++ D
Sbjct: 139 LAGHTGYLSCCRFLDD--NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDT 196
Query: 122 RILVSCGTDCTVKLWNVPVATLXXXXXXXXXXXEPLAVYVWKNSFWAVDHQWEGDLFATA 181
R+ VS D + KLW+V + + G+ FAT
Sbjct: 197 RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP------------NGNAFAT- 243
Query: 182 GAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARK 241
G+D F+ L T + D I S + +
Sbjct: 244 --------------------GSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR 283
Query: 242 VIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQ 299
+++ +D NC +D+ K D A V GH++ V + + G TGS+D ++I+
Sbjct: 284 LLLAGYDDFNCNVWDALKADRAG-VLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 56/276 (20%), Positives = 101/276 (36%), Gaps = 47/276 (17%)
Query: 73 AKNPNYLKGFFSGSMDGDIRLWDI----ANRRTVCQYSGHQGAVRGLTVSTDGRILVSCG 128
A + NY+ G +D ++++ N R + +GH G + D +I+ S G
Sbjct: 106 APSGNYVA---CGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG 162
Query: 129 TDCTVKLWNVPVATLXXXXXXXXXXXEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVD 186
D T LW++ L++ A D + LF + A
Sbjct: 163 -DTTCALWDIETGQQTTTFTGHTGDVMSLSL--------APDTR----LFVSGACDASAK 209
Query: 187 IWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRA 246
+W+ +F + ++ F P N AT + D + L+DLR A
Sbjct: 210 LWDVREGMCRQTFTGHESDINAICFFP-NGNAFATGSDDATCRLFDLR-----------A 257
Query: 247 NEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSR 306
+++ YS+D+ + + +S +GR + G D ++ R
Sbjct: 258 DQELMTYSHDNII------------CGITSVSFSKSGRLLLAGYDDFNCNVWDALKA-DR 304
Query: 307 EIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWK 342
RV C+ + D V +GS D+ L++W
Sbjct: 305 AGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 70/165 (42%), Gaps = 24/165 (14%)
Query: 215 EPNVLATTASDRSITLYDLR---------------MS---SPARKVIMRANEDCNCYSYD 256
+ N + T++ D + L+D+ MS +P ++ + D + +D
Sbjct: 164 DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD 223
Query: 257 SRKLDEAKC--VHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIY-HTKR 313
R E C GHES + I + P G F TGS D T R+F + Y H
Sbjct: 224 VR---EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNI 280
Query: 314 MQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLHPREQR 358
+ + V FS +++G DD N +W A +++ GVL + R
Sbjct: 281 ICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNR 325
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/238 (23%), Positives = 91/238 (38%), Gaps = 36/238 (15%)
Query: 62 LDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDG 121
L GH +SC + + S D LWDI + ++GH G V L+++ D
Sbjct: 150 LAGHTGYLSCCRFLDD--NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDT 207
Query: 122 RILVSCGTDCTVKLWNVPVATLXXXXXXXXXXXEPLAVYVWKNSFWAVDHQWEGDLFATA 181
R+ VS D + KLW+V + + +F + F
Sbjct: 208 RLFVSGACDASAKLWDVREG-------------------MCRQTFTGHESDINAICFFPN 248
Query: 182 GAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARK 241
G N+F G+D F+ L T + D I S + +
Sbjct: 249 G--------------NAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR 294
Query: 242 VIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQ 299
+++ +D NC +D+ K D A V GH++ V + + G TGS+D ++I+
Sbjct: 295 LLLAGYDDFNCNVWDALKADRAG-VLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 351
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 56/276 (20%), Positives = 101/276 (36%), Gaps = 47/276 (17%)
Query: 73 AKNPNYLKGFFSGSMDGDIRLWDI----ANRRTVCQYSGHQGAVRGLTVSTDGRILVSCG 128
A + NY+ G +D ++++ N R + +GH G + D +I+ S G
Sbjct: 117 APSGNYVA---CGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG 173
Query: 129 TDCTVKLWNVPVATLXXXXXXXXXXXEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVD 186
D T LW++ L++ A D + LF + A
Sbjct: 174 -DTTCALWDIETGQQTTTFTGHTGDVMSLSL--------APDTR----LFVSGACDASAK 220
Query: 187 IWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRA 246
+W+ +F + ++ F P N AT + D + L+DLR A
Sbjct: 221 LWDVREGMCRQTFTGHESDINAICFFP-NGNAFATGSDDATCRLFDLR-----------A 268
Query: 247 NEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSR 306
+++ YS+D+ + + +S +GR + G D ++ R
Sbjct: 269 DQELMTYSHDNII------------CGITSVSFSKSGRLLLAGYDDFNCNVWDALKA-DR 315
Query: 307 EIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWK 342
RV C+ + D V +GS D+ L++W
Sbjct: 316 AGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 351
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 70/165 (42%), Gaps = 24/165 (14%)
Query: 215 EPNVLATTASDRSITLYDLR---------------MS---SPARKVIMRANEDCNCYSYD 256
+ N + T++ D + L+D+ MS +P ++ + D + +D
Sbjct: 153 DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD 212
Query: 257 SRKLDEAKC--VHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIY-HTKR 313
R E C GHES + I + P G F TGS D T R+F + Y H
Sbjct: 213 VR---EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNI 269
Query: 314 MQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLHPREQR 358
+ + V FS +++G DD N +W A +++ GVL + R
Sbjct: 270 ICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNR 314
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/238 (23%), Positives = 91/238 (38%), Gaps = 36/238 (15%)
Query: 62 LDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDG 121
L GH +SC + + S D LWDI + ++GH G V L+++ D
Sbjct: 139 LAGHTGYLSCCRFLDD--NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDT 196
Query: 122 RILVSCGTDCTVKLWNVPVATLXXXXXXXXXXXEPLAVYVWKNSFWAVDHQWEGDLFATA 181
R+ VS D + KLW+V + + +F + F
Sbjct: 197 RLFVSGACDASAKLWDVREG-------------------MCRQTFTGHESDINAICFFPN 237
Query: 182 GAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARK 241
G N+F G+D F+ L T + D I S + +
Sbjct: 238 G--------------NAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR 283
Query: 242 VIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQ 299
+++ +D NC +D+ K D A V GH++ V + + G TGS+D ++I+
Sbjct: 284 LLLAGYDDFNCNVWDALKADRAG-VLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 56/276 (20%), Positives = 101/276 (36%), Gaps = 47/276 (17%)
Query: 73 AKNPNYLKGFFSGSMDGDIRLWDI----ANRRTVCQYSGHQGAVRGLTVSTDGRILVSCG 128
A + NY+ G +D ++++ N R + +GH G + D +I+ S G
Sbjct: 106 APSGNYVA---CGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG 162
Query: 129 TDCTVKLWNVPVATLXXXXXXXXXXXEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVD 186
D T LW++ L++ A D + LF + A
Sbjct: 163 -DTTCALWDIETGQQTTTFTGHTGDVMSLSL--------APDTR----LFVSGACDASAK 209
Query: 187 IWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRA 246
+W+ +F + ++ F P N AT + D + L+DLR A
Sbjct: 210 LWDVREGMCRQTFTGHESDINAICFFP-NGNAFATGSDDATCRLFDLR-----------A 257
Query: 247 NEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSR 306
+++ YS+D+ + + +S +GR + G D ++ R
Sbjct: 258 DQELMTYSHDNII------------CGITSVSFSKSGRLLLAGYDDFNCNVWDALKA-DR 304
Query: 307 EIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWK 342
RV C+ + D V +GS D+ L++W
Sbjct: 305 AGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 70/165 (42%), Gaps = 24/165 (14%)
Query: 215 EPNVLATTASDRSITLYDLR---------------MS---SPARKVIMRANEDCNCYSYD 256
+ N + T++ D + L+D+ MS +P ++ + D + +D
Sbjct: 153 DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD 212
Query: 257 SRKLDEAKC--VHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIY-HTKR 313
R E C GHES + I + P G F TGS D T R+F + Y H
Sbjct: 213 VR---EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNI 269
Query: 314 MQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLHPREQR 358
+ + V FS +++G DD N +W A +++ GVL + R
Sbjct: 270 ICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNR 314
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/238 (23%), Positives = 92/238 (38%), Gaps = 36/238 (15%)
Query: 62 LDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDG 121
L GH +SC + + S D LWDI + ++GH G V L+++ D
Sbjct: 139 LAGHTGYLSCCRFLDD--NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDT 196
Query: 122 RILVSCGTDCTVKLWNVPVATLXXXXXXXXXXXEPLAVYVWKNSFWAVDHQWEGDLFATA 181
R+ VS D + KLW+V E + + +F + F
Sbjct: 197 RLFVSGACDASAKLWDV---------------REGMC----RQTFTGHESDINAICFFPN 237
Query: 182 GAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARK 241
G N+F G+D F+ L T + D I S + +
Sbjct: 238 G--------------NAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR 283
Query: 242 VIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQ 299
+++ +D NC +D+ K D A V GH++ V + + G TGS+D ++I+
Sbjct: 284 LLLAGYDDFNCNVWDALKADRAG-VLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 56/276 (20%), Positives = 101/276 (36%), Gaps = 47/276 (17%)
Query: 73 AKNPNYLKGFFSGSMDGDIRLWDI----ANRRTVCQYSGHQGAVRGLTVSTDGRILVSCG 128
A + NY+ G +D ++++ N R + +GH G + D +I+ S G
Sbjct: 106 APSGNYVA---CGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG 162
Query: 129 TDCTVKLWNVPVATLXXXXXXXXXXXEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVD 186
D T LW++ L++ A D + LF + A
Sbjct: 163 -DTTCALWDIETGQQTTTFTGHTGDVMSLSL--------APDTR----LFVSGACDASAK 209
Query: 187 IWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRA 246
+W+ +F + ++ F P N AT + D + L+DLR A
Sbjct: 210 LWDVREGMCRQTFTGHESDINAICFFP-NGNAFATGSDDATCRLFDLR-----------A 257
Query: 247 NEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSR 306
+++ YS+D+ + + +S +GR + G D ++ R
Sbjct: 258 DQELMTYSHDNII------------CGITSVSFSKSGRLLLAGYDDFNCNVWDALKA-DR 304
Query: 307 EIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWK 342
RV C+ + D V +GS D+ L++W
Sbjct: 305 AGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 62/286 (21%), Positives = 114/286 (39%), Gaps = 25/286 (8%)
Query: 61 ALDGHRDG-ISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVST 119
L GH I+C+ NY+ +G+ D IR++D N++ + Q SGH G V L +
Sbjct: 116 TLRGHMTSVITCLQFEDNYV---ITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAH 172
Query: 120 DGRILVSCGTDCTVKLWNVPVATLXXXXXXXXXXXEPLAVYVWKNSFWAVDHQWEGDLFA 179
G ILVS TD TV++W++ L + +KN + V
Sbjct: 173 GG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVT--------G 223
Query: 180 TAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPA 239
+ + +W + + G + + F+ E N + +R S
Sbjct: 224 SRDNTLHVWKLPKESSVPDH--GEEHDYPLVFHTPEENPYFVGVLRGHMA--SVRTVSGH 279
Query: 240 RKVIMRANEDCNCYSYDSRKLDEAKCVHM--GHESAVMDIDYSPTGREFVTGSYDRTIRI 297
+++ + D +D ++ KC+++ GH + Y + ++ S D TIRI
Sbjct: 280 GNIVVSGSYDNTLIVWDVAQM---KCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRI 336
Query: 298 FQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKA 343
+ G E+ +T + +++S + D ++R W A
Sbjct: 337 WDLENG---ELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDA 379
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 58 FIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTV 117
F+G L GH + ++ + N + SGS D + +WD+A + + SGH +
Sbjct: 262 FVGVLRGHMASVRTVSGHGNIV---VSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIY 318
Query: 118 STDGRILVSCGTDCTVKLWNVPVATL 143
+ + +S D T+++W++ L
Sbjct: 319 DHERKRCISASMDTTIRIWDLENGEL 344
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 69/162 (42%), Gaps = 36/162 (22%)
Query: 203 TDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDE 262
T + ++F E N + T A D+ I +YD S +K +++ +
Sbjct: 122 TSVITCLQF---EDNYVITGADDKMIRVYD----SINKKFLLQLS--------------- 159
Query: 263 AKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIY--HTKRMQRVFCV 320
GH+ V + Y+ G V+GS DRT+R++ G ++ H ++ + V
Sbjct: 160 ------GHDGGVWALKYAHGGI-LVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIV 212
Query: 321 KFSCDASYVISGSDDTNLRLWKAKASEQLGVLHPREQRKHAY 362
++ + Y+++GS D L +WK + P +H Y
Sbjct: 213 EYK-NIKYIVTGSRDNTLHVWKLPKESSV----PDHGEEHDY 249
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 8/88 (9%)
Query: 56 RPFIGALDGHRDGISCMAKNPNYLKG--FFSGSMDGDIRLWDIANRRTVCQYSGHQGAVR 113
+ F+ L GH G+ + Y G SGS D +R+WDI + GH VR
Sbjct: 152 KKFLLQLSGHDGGVWALK----YAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVR 207
Query: 114 GLTVSTDGRI--LVSCGTDCTVKLWNVP 139
L + I +V+ D T+ +W +P
Sbjct: 208 CLDIVEYKNIKYIVTGSRDNTLHVWKLP 235
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Query: 269 GHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASY 328
GH ++V + S G V+GSYD T+ ++ + I + R++ + +
Sbjct: 268 GHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYIL-SGHTDRIYSTIYDHERKR 324
Query: 329 VISGSDDTNLRLWKAKASEQLGVLH 353
IS S DT +R+W + E + L
Sbjct: 325 CISASMDTTIRIWDLENGELMYTLQ 349
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 64/291 (21%), Positives = 113/291 (38%), Gaps = 89/291 (30%)
Query: 68 GISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSC 127
G+ C+ + + SG D I++WD +GH G+V L + D R++++
Sbjct: 135 GVYCLQYDD---QKIVSGLRDNTIKIWDKNTLECKRILTGHTGSV--LCLQYDERVIITG 189
Query: 128 GTDCTVKLWNVPVATLXXXXXXXXXXXEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDI 187
+D TV++W+V
Sbjct: 190 SSDSTVRVWDV------------------------------------------------- 200
Query: 188 WNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRAN 247
N + +N+ + V+ +RFN ++ T + DRSI ++D M+SP + R
Sbjct: 201 ---NTGEMLNTLIHHCEAVLHLRFNNG---MMVTCSKDRSIAVWD--MASPTDITLRR-- 250
Query: 248 EDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGR-SR 306
V +GH +AV +D+ + V+ S DRTI+++ + R
Sbjct: 251 ------------------VLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWNTSTCEFVR 290
Query: 307 EIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLHPREQ 357
+ KR + C+++ V+SGS D +RLW + L VL E+
Sbjct: 291 TLNGHKR--GIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEE 337
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 5/84 (5%)
Query: 58 FIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTV 117
F+ L+GH+ GI+C+ + SGS D IRLWDI + GH+ VR +
Sbjct: 288 FVRTLNGHKRGIACLQYRDRLV---VSGSSDNTIRLWDIECGACLRVLEGHEELVR--CI 342
Query: 118 STDGRILVSCGTDCTVKLWNVPVA 141
D + +VS D +K+W++ A
Sbjct: 343 RFDNKRIVSGAYDGKIKVWDLVAA 366
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/273 (19%), Positives = 111/273 (40%), Gaps = 37/273 (13%)
Query: 98 NRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLXXXXXXXXXXXEPL 157
N + +GH AV + S +G L S D +K+W +
Sbjct: 15 NYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 74
Query: 158 AVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAE 215
A W+ D +L +A + IW+ + + + + + ++ V FNP +
Sbjct: 75 A--------WSSD----SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-Q 121
Query: 216 PNVLATTASDRSITLYDLRM----------SSPARKV--------IMRANEDCNCYSYDS 257
N++ + + D S+ ++D++ S P V I+ ++ D C +D+
Sbjct: 122 SNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 181
Query: 258 RKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRV 317
K + V + +SP G+ + + D ++++ Y+ G+ + Y + ++
Sbjct: 182 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEK- 240
Query: 318 FCV--KFSCDAS-YVISGSDDTNLRLWKAKASE 347
+C+ FS +++SGS+D + +W + E
Sbjct: 241 YCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKE 273
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 1/95 (1%)
Query: 269 GHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASY 328
GH+ + D+ +S V+ S D+T++I+ + G+ + VFC F+ ++
Sbjct: 66 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFNPQSNL 124
Query: 329 VISGSDDTNLRLWKAKASEQLGVLHPREQRKHAYH 363
++SGS D ++R+W K L L A H
Sbjct: 125 IVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVH 159
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 269 GHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASY 328
GH AV + +SP G + S D+ I+I+ G+ + ++ + V +S D++
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSDSNL 82
Query: 329 VISGSDDTNLRLWKAKASEQLGVL 352
++S SDD L++W + + L L
Sbjct: 83 LVSASDDKTLKIWDVSSGKCLKTL 106
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 71/321 (22%), Positives = 133/321 (41%), Gaps = 63/321 (19%)
Query: 40 EYVRALTAAKLEKIFAR---PFIGALDGHRDGISCMA--KNPNYLKGFFSGSMDGDIRLW 94
E++ + +A KL KI+ F + GH+ GIS +A + N L S S D +++W
Sbjct: 39 EWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL---VSASDDKTLKIW 95
Query: 95 DIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLXXXXXXXXXXX 154
D+++ + + GH V + ++VS D +V++W+V
Sbjct: 96 DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMC---LKTLPAHS 152
Query: 155 EPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVIS-VRF 211
+P++ AV +G L ++ IW+ Q + + + +S V+F
Sbjct: 153 DPVS---------AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 203
Query: 212 NPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCV--HMG 269
+P +LA T D + L+D YS + KC+ + G
Sbjct: 204 SPNGKYILAATL-DNDLKLWD--------------------YS-------KGKCLKTYTG 235
Query: 270 H--ESAVMDIDYSPTGREF-VTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDA 326
H E + ++S TG ++ V+GS D + I+ +++EI + + +C
Sbjct: 236 HKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNL---QTKEIVQKLQGHTDVVISTACHP 292
Query: 327 SYVISGS----DDTNLRLWKA 343
+ I S +D ++LWK+
Sbjct: 293 TENIIASAALENDKTIKLWKS 313
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 69/159 (43%), Gaps = 27/159 (16%)
Query: 208 SVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVH 267
SV F+P + LAT A DR I ++D+ RK++M +
Sbjct: 128 SVCFSP-DGKFLATGAEDRLIRIWDIE----NRKIVM---------------------IL 161
Query: 268 MGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDAS 327
GHE + +DY P+G + V+GS DRT+RI+ G+ + V D
Sbjct: 162 QGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVS-PGDGK 220
Query: 328 YVISGSDDTNLRLWKAKASEQLGVLHPREQRKHAYHEAV 366
Y+ +GS D +R+W ++ + L + + ++V
Sbjct: 221 YIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSV 259
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 51/277 (18%), Positives = 106/277 (38%), Gaps = 46/277 (16%)
Query: 112 VRGLTVSTDGRILVSCGTDCTVKLWNVPVATLXXXXXXXXXXXEPLAVYVWKNSFWAVDH 171
+R + S DG+ L + D +++W++ + + + + +++D+
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIV------------MILQGHEQDIYSLDY 173
Query: 172 QWEGDLFATAGAQ--VDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSIT 229
GD + V IW+ Q + D V +V +P + +A + DR++
Sbjct: 174 FPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSI-EDGVTTVAVSPGDGKYIAAGSLDRAVR 232
Query: 230 LYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTG 289
++D + +LD GH+ +V + ++ G+ V+G
Sbjct: 233 VWDSETG------------------FLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSG 274
Query: 290 SYDRTIRIFQYNGGRSR-----------EIYHTKRMQRVFCVKFSCDASYVISGSDDTNL 338
S DR+++++ ++ E+ + V V + + Y++SGS D +
Sbjct: 275 SLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGV 334
Query: 339 RLWKAKASEQLGVLHPREQRKHAYHEAVKNRYKHLPE 375
W K+ L +L + R AV N PE
Sbjct: 335 LFWDKKSGNPLLML--QGHRNSVISVAVANGSSLGPE 369
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 69/288 (23%), Positives = 112/288 (38%), Gaps = 43/288 (14%)
Query: 71 CMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTD 130
C + + +L +G+ D IR+WDI NR+ V GH+ + L G LVS D
Sbjct: 130 CFSPDGKFLA---TGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGD 186
Query: 131 CTVKLWNVPVA----TLXXXXXXXXXXXEPL-AVYVWKNSFWAVDHQWEGDLFATAGAQV 185
TV++W++ TL P Y+ S W+ + G V
Sbjct: 187 RTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSE----TGFLV 242
Query: 186 DIWNHNRSQPINSFQWG-TDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIM 244
+ R N G D+V SV F +V++ + DRS+ L++L+
Sbjct: 243 E-----RLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL-DRSVKLWNLQ---------- 286
Query: 245 RANEDCNCYSYDSRKLDEAKC--VHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNG 302
AN DS+ + C ++GH+ V+ + + ++GS DR + +
Sbjct: 287 NANNKS-----DSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKS 341
Query: 303 GRSREIYHTKRMQRVFCVKFSCDASY------VISGSDDTNLRLWKAK 344
G + R V V + +S +GS D R+WK K
Sbjct: 342 GNPLLMLQGHR-NSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 388
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 74/176 (42%), Gaps = 18/176 (10%)
Query: 66 RDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQY-------SGHQGAVRGLTVS 118
DG++ +A +P K +GS+D +R+WD V + +GH+ +V + +
Sbjct: 206 EDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFT 265
Query: 119 TDGRILVSCGTDCTVKLWNVPVATLXXXXXXXXXXXEPLAVYVWKNSFWAVDHQWEGDLF 178
DG+ +VS D +VKLWN+ A Y+ F + D +
Sbjct: 266 RDGQSVVSGSLDRSVKLWNLQNAN-NKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEY 324
Query: 179 ATAGAQ---VDIWNHNRSQPINSFQWGTDTVISV------RFNPAEPNVLATTASD 225
+G++ V W+ P+ Q ++VISV P E NV AT + D
Sbjct: 325 ILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGP-EYNVFATGSGD 379
Score = 32.3 bits (72), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 1/91 (1%)
Query: 53 IFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAV 112
I R + L GH I + P+ K SGS D +R+WD+ + S G
Sbjct: 152 IENRKIVMILQGHEQDIYSLDYFPSGDK-LVSGSGDRTVRIWDLRTGQCSLTLSIEDGVT 210
Query: 113 RGLTVSTDGRILVSCGTDCTVKLWNVPVATL 143
DG+ + + D V++W+ L
Sbjct: 211 TVAVSPGDGKYIAAGSLDRAVRVWDSETGFL 241
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 41/188 (21%), Positives = 70/188 (37%), Gaps = 35/188 (18%)
Query: 177 LFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEP-NVLATTASDRSITLYDLRM 235
L A+ +W+ Q + SF V+ + P+E N + D+ ++D+R
Sbjct: 170 LTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMR- 228
Query: 236 SSPARKVIMRANEDCNCYSYDSRKLDEAKCVHM--GHESAVMDIDYSPTGREFVTGSYDR 293
+CV HES V + Y P+G F +GS D
Sbjct: 229 --------------------------SGQCVQAFETHESDVNSVRYYPSGDAFASGSDDA 262
Query: 294 TIRIFQYNGGRSREIYHTKRMQRVF---CVKFSCDASYVISGSDDTNLRLWKAKASEQLG 350
T R++ R IY + + +F V FS + +G +D + +W ++
Sbjct: 263 TCRLYDLRADREVAIYSKESI--IFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVS 320
Query: 351 VLHPREQR 358
+L E R
Sbjct: 321 ILFGHENR 328
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 72/169 (42%), Gaps = 27/169 (15%)
Query: 175 GDLFATAGA--QVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYD 232
G+ F + G + +W+ Q + +F+ V SVR+ P+ + A+ + D + LYD
Sbjct: 210 GNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPS-GDAFASGSDDATCRLYD 268
Query: 233 LRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYD 292
LR A+ + YS +S + G S +D+S +GR G D
Sbjct: 269 LR-----------ADREVAIYSKES--------IIFGASS----VDFSLSGRLLFAGYND 305
Query: 293 RTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLW 341
TI ++ G I RV ++ S D + SGS D LR+W
Sbjct: 306 YTINVWDVLKGSRVSILFGHE-NRVSTLRVSPDGTAFCSGSWDHTLRVW 353
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 53/242 (21%), Positives = 88/242 (36%), Gaps = 53/242 (21%)
Query: 72 MAKNPNYLKG---------FFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTV--STD 120
+A + NYL + S DG LWD+ + + + + GH V L + S
Sbjct: 150 VAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSET 209
Query: 121 GRILVSCGTDCTVKLWNVPVATLXXXXXXXXXXXEPLAVYVWKNSFWAVDHQWEGDLFAT 180
G VS G D +W++ + Y GD FA+
Sbjct: 210 GNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYP------------SGDAFAS 257
Query: 181 AG--AQVDIWN--HNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMS 236
A +++ +R I S + SV F+ + +L +D +I ++D+
Sbjct: 258 GSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLS-GRLLFAGYNDYTINVWDVLKG 316
Query: 237 SPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIR 296
S R I+ GHE+ V + SP G F +GS+D T+R
Sbjct: 317 S--RVSIL-----------------------FGHENRVSTLRVSPDGTAFCSGSWDHTLR 351
Query: 297 IF 298
++
Sbjct: 352 VW 353
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 55/131 (41%), Gaps = 9/131 (6%)
Query: 16 ERSQDLQRVY-HNYDP---NLRPQEKAVEYVRALT--AAKLEKIFARPFIGALDGHRDGI 69
E Q LQ + H D +L P E +V A + + + + A + H +
Sbjct: 184 ESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDV 243
Query: 70 SCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTV--STDGRILVSC 127
+ + P+ F SGS D RL+D+ R V YS +V S GR+L +
Sbjct: 244 NSVRYYPSG-DAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAG 302
Query: 128 GTDCTVKLWNV 138
D T+ +W+V
Sbjct: 303 YNDYTINVWDV 313
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 65/320 (20%), Positives = 118/320 (36%), Gaps = 72/320 (22%)
Query: 61 ALDGHRDG-ISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVST 119
L GH D I+C+ N + SGS D +++W + + GH G V +
Sbjct: 113 VLKGHDDHVITCLQFCGNRI---VSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD 169
Query: 120 DGRILVSCGTDCTVKLWNVPVATLXXXXXXXXXXXEPLAVY--------------VWKNS 165
+ I++S TD T+K+WN + ++ VW
Sbjct: 170 N--IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIE 227
Query: 166 FWAVDHQWEGDLFATAGAQVD--------------IWNHNRSQPINSFQWGTDTVISVRF 211
H G + A Q D +W+ +++ Q T+ V S++F
Sbjct: 228 TGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF 287
Query: 212 NPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHM--G 269
+ + + + D SI ++D+ + C+H G
Sbjct: 288 DGIH---VVSGSLDTSIRVWDV---------------------------ETGNCIHTLTG 317
Query: 270 HESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYH--TKRMQRVFCVKFSCDAS 327
H+S ++ V+G+ D T++I+ G+ + K V C++F + +
Sbjct: 318 HQSLTSGMELKDN--ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF--NKN 373
Query: 328 YVISGSDDTNLRLWKAKASE 347
+VI+ SDD ++LW K E
Sbjct: 374 FVITSSDDGTVKLWDLKTGE 393
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 69/135 (51%), Gaps = 22/135 (16%)
Query: 222 TASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVH--MGHESAVMDIDY 279
T++ R + L++ R+ S +R +R + ++ +C+H MGH +AV + Y
Sbjct: 199 TSTVRCMHLHEKRVVSGSRDATLRVWD-----------IETGQCLHVLMGHVAAVRCVQY 247
Query: 280 SPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKR--MQRVFCVKFSCDASYVISGSDDTN 337
GR V+G+YD ++++ + HT + RV+ ++F D +V+SGS DT+
Sbjct: 248 D--GRRVVSGAYDFMVKVWD---PETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTS 300
Query: 338 LRLWKAKASEQLGVL 352
+R+W + + L
Sbjct: 301 IRVWDVETGNCIHTL 315
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 83/216 (38%), Gaps = 39/216 (18%)
Query: 59 IGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVS 118
I L GH + CM + K SGS D +R+WDI + + GH AVR V
Sbjct: 192 IHTLYGHTSTVRCMHLHE---KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVR--CVQ 246
Query: 119 TDGRILVSCGTDCTVKLWNVPVATLXXXXXXXXXXXEPL---AVYVWKNSF------WAV 169
DGR +VS D VK+W+ T L ++V S W V
Sbjct: 247 YDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDV 306
Query: 170 D-----HQWEGDLFATAGAQ--------------VDIWNHNRSQPINSFQWGT---DTVI 207
+ H G T+G + V IW+ Q + + Q V
Sbjct: 307 ETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVT 366
Query: 208 SVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVI 243
++FN N + T++ D ++ L+DL+ R ++
Sbjct: 367 CLQFN---KNFVITSSDDGTVKLWDLKTGEFIRNLV 399
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/193 (19%), Positives = 77/193 (39%), Gaps = 25/193 (12%)
Query: 185 VDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIM 244
+ +WN + I++ T TV + + + + + D ++ ++D+ + V+M
Sbjct: 181 LKVWNAETGECIHTLYGHTSTVRCMHLHEKR---VVSGSRDATLRVWDIE-TGQCLHVLM 236
Query: 245 RANEDCNCYSYDSRKL--------------DEAKCVH--MGHESAVMDIDYSPTGREFVT 288
C YD R++ + C+H GH + V + + G V+
Sbjct: 237 GHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFD--GIHVVS 294
Query: 289 GSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQ 348
GS D +IR++ G HT + + ++SG+ D+ +++W K +
Sbjct: 295 GSLDTSIRVWDVETGNC---IHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQC 351
Query: 349 LGVLHPREQRKHA 361
L L + + A
Sbjct: 352 LQTLQGPNKHQSA 364
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 35/69 (50%), Gaps = 7/69 (10%)
Query: 65 HRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIAN----RRTVCQYSGHQGAVRGLTVSTD 120
H+ ++C+ N N++ + S DG ++LWD+ R V SG G V +++
Sbjct: 361 HQSAVTCLQFNKNFV---ITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASN 417
Query: 121 GRILVSCGT 129
+++ + G+
Sbjct: 418 TKLVCAVGS 426
Score = 28.1 bits (61), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 47/114 (41%), Gaps = 18/114 (15%)
Query: 269 GHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSRE--IYHTKRMQRVFCVKFSCDA 326
GH+ V+ G V+GS D T++++ G+ + HT +
Sbjct: 116 GHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVW-----SSQMRD 169
Query: 327 SYVISGSDDTNLRLWKAKASEQLGVLHPREQRKHAYHEAVKNRYKHLPEIKRIV 380
+ +ISGS D L++W A+ E + L Y R HL E KR+V
Sbjct: 170 NIIISGSTDRTLKVWNAETGECIHTL---------YGHTSTVRCMHLHE-KRVV 213
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 62/249 (24%), Positives = 94/249 (37%), Gaps = 50/249 (20%)
Query: 72 MAKNPNYLKGFFSGSMDGD--IRLWDIANRRTVCQY---SGHQGAVRGLTVSTDGRILVS 126
+A NP G S GD IR+W +C+ GHQ VR + S G L S
Sbjct: 22 LAWNP---AGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLAS 78
Query: 127 CGTDCTVKLWNVPVATLXXXXXXXXXXXEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVD 186
D T +W E +V W S G+L AT
Sbjct: 79 ASFDATTCIWKKNQDDFECVTTLEGHENEVKSV-AWAPS---------GNLLATCSRDKS 128
Query: 187 IW-----NHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARK 241
+W + + ++ T V V ++P++ +LA+ + D ++ LY
Sbjct: 129 VWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQ-ELLASASYDDTVKLY---------- 177
Query: 242 VIMRANEDCNCYSYDSRKLDEAKCVHM-GHESAVMDIDYSPTGREFVTGSYDRTIRIF-Q 299
R ED D C + GHES V + + P+G+ + S DRT+RI+ Q
Sbjct: 178 ---REEED-----------DWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQ 223
Query: 300 YNGGRSREI 308
Y G + +
Sbjct: 224 YLPGNEQGV 232
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 65/305 (21%), Positives = 114/305 (37%), Gaps = 41/305 (13%)
Query: 63 DGHRDGISCMAKNP--NYLKGFFSGSMDGDIRLW--DIANRRTVCQYSGHQGAVRGLTVS 118
+GH+ + +A +P NYL S S D +W + + V GH+ V+ + +
Sbjct: 58 EGHQRTVRKVAWSPCGNYLA---SASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWA 114
Query: 119 TDGRILVSCGTDCTVKLWNVPVATLXXXXXXXXXXXEPLAVYVWKNSFWAVDHQWEGDLF 178
G +L +C D +V +W V + + VW S +L
Sbjct: 115 PSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPS---------QELL 165
Query: 179 ATAGAQ--VDIWNHNRSQPI--NSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLR 234
A+A V ++ + + + TV S+ F+P+ LA+ + DR++ ++
Sbjct: 166 ASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQR-LASCSDDRTVRIW--- 221
Query: 235 MSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMG-HESAVMDIDYSPTGREFVTGSYDR 293
R+ + + C D + C G H + DI + T D
Sbjct: 222 -----RQYLPGNEQGVACSGSDPSW--KCICTLSGFHSRTIYDIAWCQLTGALATACGDD 274
Query: 294 TIRIFQYNGGRSREI--------YHTKRMQRVFCVKFSC-DASYVISGSDDTNLRLWKAK 344
IR+FQ + + H Q V CV ++ + + S SDD + WK +
Sbjct: 275 AIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQ 334
Query: 345 ASEQL 349
E L
Sbjct: 335 RPEGL 339
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 3/80 (3%)
Query: 59 IGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVC--QYSGHQGAVRGLT 116
+ L+ H + + +P+ + S S D ++L+ VC GH+ V L
Sbjct: 143 VSVLNSHTQDVKHVVWHPSQ-ELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLA 201
Query: 117 VSTDGRILVSCGTDCTVKLW 136
G+ L SC D TV++W
Sbjct: 202 FDPSGQRLASCSDDRTVRIW 221
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 65/160 (40%), Gaps = 33/160 (20%)
Query: 203 TDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDE 262
T V+S+ N N+ + + D ++ L+DLR++S A +
Sbjct: 205 TADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRT-------------------- 244
Query: 263 AKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTK------RMQR 316
+ GHE + + + P G+ F TGS D T R+F G ++Y+ + +
Sbjct: 245 ----YHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPI 300
Query: 317 VFCVKFSCDASYVISGSDDTNLRLWKAKASE---QLGVLH 353
V V FS + +G + + +W +E LG L
Sbjct: 301 VTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQ 340
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 55/284 (19%), Positives = 100/284 (35%), Gaps = 90/284 (31%)
Query: 57 PFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQY-----SGHQGA 111
P L GH+ S P+ +GS D LWD+ + + + SGH
Sbjct: 148 PVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTAD 207
Query: 112 VRGLTV-STDGRILVSCGTDCTVKLWNVPVATLXXXXXXXXXXXEPLAVYVWKNSFWAVD 170
V L++ S + + +S D TV+LW++ + + + Y
Sbjct: 208 VLSLSINSLNANMFISGSCDTTVRLWDLRITS------------RAVRTY---------- 245
Query: 171 HQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITL 230
H EGD + SV+F P + T + D + L
Sbjct: 246 HGHEGD-----------------------------INSVKFFP-DGQRFGTGSDDGTCRL 275
Query: 231 YDLRMS-------------------------SPARKVIMRANEDCNCYSYDSRKLDEAKC 265
+D+R S + +++ + +CY +D+ L
Sbjct: 276 FDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDT--LLAEMV 333
Query: 266 VHMG-----HESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGR 304
+++G HE + + S G TGS+D+ ++I+ ++G R
Sbjct: 334 LNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR 377
Score = 36.2 bits (82), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 63/154 (40%), Gaps = 23/154 (14%)
Query: 208 SVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVH 267
S ++ P + L T + D++ L+D+ + +++ + +E
Sbjct: 162 SCQYVPDQETRLITGSGDQTCVLWDV---TTGQRISIFGSE-----------------FP 201
Query: 268 MGHESAVMDIDY-SPTGREFVTGSYDRTIRIFQYN-GGRSREIYHTKRMQRVFCVKFSCD 325
GH + V+ + S F++GS D T+R++ R+ YH + VKF D
Sbjct: 202 SGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGD-INSVKFFPD 260
Query: 326 ASYVISGSDDTNLRLWKAKASEQLGVLHPREQRK 359
+GSDD RL+ + QL V + R
Sbjct: 261 GQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRN 294
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 57/249 (22%), Positives = 101/249 (40%), Gaps = 47/249 (18%)
Query: 62 LDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWD--IANRRTVCQYSGHQGAVRGLTVST 119
+ GH+ + C++ N + L SGS G I D IAN + + GH V GL +
Sbjct: 172 MAGHQARVGCLSWNRHVLS---SGSRSGAIHHHDVRIANHQ-IGTLQGHSSEVCGLAWRS 227
Query: 120 DGRILVSCGTDCTVKLWNVPVATLXXXXXXXXXXXEPLAVYVWKNSFWAVDHQWEGDLFA 179
DG L S G D V++W+ + + +A W W+ +L A
Sbjct: 228 DGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVA--------WC---PWQSNLLA 276
Query: 180 TAGA----QVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTA-SDRSITLYDLR 234
T G Q+ WN +N+ G+ V S+ ++P +++T D +++++
Sbjct: 277 TGGGTMDKQIHFWNAATGARVNTVDAGSQ-VTSLIWSPHSKEIMSTHGFPDNNLSIWSYS 335
Query: 235 MSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRT 294
S ++V + A H++ V+ SP GR T + D
Sbjct: 336 SSGLTKQVDIPA-----------------------HDTRVLYSALSPDGRILSTAASDEN 372
Query: 295 IRIFQ-YNG 302
++ ++ Y+G
Sbjct: 373 LKFWRVYDG 381
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/146 (20%), Positives = 58/146 (39%), Gaps = 22/146 (15%)
Query: 219 LATTASDRSITLYDLRMSSP---------ARKVIMRANEDCNCYSYDSRKLDE------- 262
LA+ +D + ++D R S P A K + N + +D+
Sbjct: 232 LASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNA 291
Query: 263 ---AKCVHMGHESAVMDIDYSPTGREFVT--GSYDRTIRIFQYNG-GRSREIYHTKRMQR 316
A+ + S V + +SP +E ++ G D + I+ Y+ G ++++ R
Sbjct: 292 ATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTR 351
Query: 317 VFCVKFSCDASYVISGSDDTNLRLWK 342
V S D + + + D NL+ W+
Sbjct: 352 VLYSALSPDGRILSTAASDENLKFWR 377
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 61/140 (43%), Gaps = 25/140 (17%)
Query: 206 VISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKC 265
V + P P+++ + + D++I ++ L D Y R L
Sbjct: 18 VTQIATTPQFPDMILSASRDKTIIMWKL-------------TRDETNYGIPQRAL----- 59
Query: 266 VHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRS--REIYHTKRMQRVFCVKFS 323
GH V D+ S G+ ++GS+D T+R++ G + R + HTK V V FS
Sbjct: 60 --RGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTK---DVLSVAFS 114
Query: 324 CDASYVISGSDDTNLRLWKA 343
D ++SGS D ++LW
Sbjct: 115 SDNRQIVSGSRDKTIKLWNT 134
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 32/55 (58%)
Query: 83 FSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWN 137
SGS DG +RLWD+ T ++ GH V + S+D R +VS D T+KLWN
Sbjct: 79 LSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWN 133
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 63 DGHRDGISCMAKNPNYLKGFF-SGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDG 121
+ H + +SC+ +PN S D +++W++AN + + GH G + +TVS DG
Sbjct: 145 ESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDG 204
Query: 122 RILVSCGTDCTVKLWNV 138
+ S G D LW++
Sbjct: 205 SLCASGGKDGQAMLWDL 221
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/258 (21%), Positives = 99/258 (38%), Gaps = 54/258 (20%)
Query: 60 GALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRG----- 114
G L GH ++ +A P + S S D I +W + T Y Q A+RG
Sbjct: 9 GTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDET--NYGIPQRALRGHSHFV 66
Query: 115 --LTVSTDGRILVSCGTDCTVKLWNVPVATLXXXXXXXXXXXEPLAVYVWKNSFWAVDHQ 172
+ +S+DG+ +S D T++LW++ T + L+V +F + + Q
Sbjct: 67 SDVVISSDGQFALSGSWDGTLRLWDLTTGT--TTRRFVGHTKDVLSV-----AFSSDNRQ 119
Query: 173 WEGDLFATAGAQVDIWN-----HNRSQPINSFQWGTDTVISVRFNPAEPN-VLATTASDR 226
+ + + +WN Q + +W V VRF+P N ++ + D+
Sbjct: 120 ---IVSGSRDKTIKLWNTLGVCKYTVQDESHSEW----VSCVRFSPNSSNPIIVSCGWDK 172
Query: 227 SITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREF 286
+ +++L NC + K H+GH + + SP G
Sbjct: 173 LVKVWNL----------------ANC---------KLKTNHIGHTGYLNTVTVSPDGSLC 207
Query: 287 VTGSYDRTIRIFQYNGGR 304
+G D ++ N G+
Sbjct: 208 ASGGKDGQAMLWDLNEGK 225
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 268 MGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDAS 327
+GH V+ + +S R+ V+GS D+TI+++ G + + V CV+FS ++S
Sbjct: 102 VGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSS 161
Query: 328 --YVISGSDDTNLRLW 341
++S D +++W
Sbjct: 162 NPIIVSCGWDKLVKVW 177
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 61/140 (43%), Gaps = 25/140 (17%)
Query: 206 VISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKC 265
V + P P+++ + + D++I ++ L D Y R L
Sbjct: 41 VTQIATTPQFPDMILSASRDKTIIMWKL-------------TRDETNYGIPQRAL----- 82
Query: 266 VHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRS--REIYHTKRMQRVFCVKFS 323
GH V D+ S G+ ++GS+D T+R++ G + R + HTK V V FS
Sbjct: 83 --RGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTK---DVLSVAFS 137
Query: 324 CDASYVISGSDDTNLRLWKA 343
D ++SGS D ++LW
Sbjct: 138 SDNRQIVSGSRDKTIKLWNT 157
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 32/55 (58%)
Query: 83 FSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWN 137
SGS DG +RLWD+ T ++ GH V + S+D R +VS D T+KLWN
Sbjct: 102 LSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWN 156
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 63 DGHRDGISCMAKNPNYLKGFF-SGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDG 121
+ H + +SC+ +PN S D +++W++AN + + GH G + +TVS DG
Sbjct: 168 ESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDG 227
Query: 122 RILVSCGTDCTVKLWNV 138
+ S G D LW++
Sbjct: 228 SLCASGGKDGQAMLWDL 244
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/258 (21%), Positives = 99/258 (38%), Gaps = 54/258 (20%)
Query: 60 GALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRG----- 114
G L GH ++ +A P + S S D I +W + T Y Q A+RG
Sbjct: 32 GTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDET--NYGIPQRALRGHSHFV 89
Query: 115 --LTVSTDGRILVSCGTDCTVKLWNVPVATLXXXXXXXXXXXEPLAVYVWKNSFWAVDHQ 172
+ +S+DG+ +S D T++LW++ T + L+V +F + + Q
Sbjct: 90 SDVVISSDGQFALSGSWDGTLRLWDLTTGT--TTRRFVGHTKDVLSV-----AFSSDNRQ 142
Query: 173 WEGDLFATAGAQVDIWN-----HNRSQPINSFQWGTDTVISVRFNPAEPN-VLATTASDR 226
+ + + +WN Q + +W V VRF+P N ++ + D+
Sbjct: 143 ---IVSGSRDKTIKLWNTLGVCKYTVQDESHSEW----VSCVRFSPNSSNPIIVSCGWDK 195
Query: 227 SITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREF 286
+ +++L NC + K H+GH + + SP G
Sbjct: 196 LVKVWNL----------------ANC---------KLKTNHIGHTGYLNTVTVSPDGSLC 230
Query: 287 VTGSYDRTIRIFQYNGGR 304
+G D ++ N G+
Sbjct: 231 ASGGKDGQAMLWDLNEGK 248
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 268 MGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDAS 327
+GH V+ + +S R+ V+GS D+TI+++ G + + V CV+FS ++S
Sbjct: 125 VGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSS 184
Query: 328 --YVISGSDDTNLRLWK 342
++S D +++W
Sbjct: 185 NPIIVSCGWDKLVKVWN 201
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 61 ALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTD 120
AL GH +S +A + S S D +RLWD+ T ++ GHQ V + S D
Sbjct: 71 ALTGHNHFVSDLALSQENCFAI-SSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPD 129
Query: 121 GRILVSCGTDCTVKLWNV 138
R ++S G + +KLWN+
Sbjct: 130 NRQILSAGAEREIKLWNI 147
Score = 35.0 bits (79), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 41/85 (48%), Gaps = 10/85 (11%)
Query: 63 DGHRDGISCMAKNP---------NYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVR 113
+ H D +SC+ +P + F S DG +++W+ N + + H+ V
Sbjct: 159 ENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVN 217
Query: 114 GLTVSTDGRILVSCGTDCTVKLWNV 138
L++S +G+ + + G D + +W++
Sbjct: 218 HLSISPNGKYIATGGKDKKLLIWDI 242
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Query: 269 GHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASY 328
GH V D+ S ++ S+D+T+R++ G + + + V+ V FS D
Sbjct: 74 GHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRF-VGHQSEVYSVAFSPDNRQ 132
Query: 329 VISGSDDTNLRLW 341
++S + ++LW
Sbjct: 133 ILSAGAEREIKLW 145
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/90 (20%), Positives = 40/90 (44%), Gaps = 26/90 (28%)
Query: 214 AEPNVLATTAS-DRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHES 272
++ N A ++S D+++ L+DLR + ++ + GH+S
Sbjct: 85 SQENCFAISSSWDKTLRLWDLRTGTTYKRFV-------------------------GHQS 119
Query: 273 AVMDIDYSPTGREFVTGSYDRTIRIFQYNG 302
V + +SP R+ ++ +R I+++ G
Sbjct: 120 EVYSVAFSPDNRQILSAGAEREIKLWNILG 149
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 39/95 (41%), Gaps = 12/95 (12%)
Query: 60 GALDGHRDGISCMAKNPNYLKG-----FFSGSMDGDIRLWDIANRRTVCQY-------SG 107
G L+GH D ++ + + + SGS D + +W + + +G
Sbjct: 15 GILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTG 74
Query: 108 HQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVAT 142
H V L +S + +S D T++LW++ T
Sbjct: 75 HNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGT 109
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 65 HRDGISCMAKNPNY-LKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRI 123
H D +SC+ +P+ SG D +++WD+A R V GH V +TVS DG +
Sbjct: 151 HTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSL 210
Query: 124 LVSCGTDCTVKLWNV 138
S D +LW++
Sbjct: 211 CASSDKDGVARLWDL 225
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 4/87 (4%)
Query: 259 KLDEAKCVH--MGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQR 316
L +C + +GH V+ + +SP R+ V+G D +R++ G +
Sbjct: 95 NLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKGECMHTLSRGAHTDW 154
Query: 317 VFCVKF--SCDASYVISGSDDTNLRLW 341
V CV+F S DA ++SG D +++W
Sbjct: 155 VSCVRFSPSLDAPVIVSGGWDNLVKVW 181
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 50/103 (48%), Gaps = 13/103 (12%)
Query: 245 RANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGR 304
R + +C+ Y R+L+ GH + V D+ S G V+ S+D ++R++ G+
Sbjct: 49 RHSSECS-YGLPDRRLE-------GHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQ 100
Query: 305 SREIY--HTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKA 345
+ + HTK V V FS D ++SG D LR+W K
Sbjct: 101 CQYKFLGHTK---DVLSVAFSPDNRQIVSGGRDNALRVWNVKG 140
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 5/79 (6%)
Query: 62 LDGHRDGIS--CMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVST 119
L+GH +S ++ N N+ S S D +RLW++ N + ++ GH V + S
Sbjct: 63 LEGHSAFVSDVALSNNGNFA---VSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSP 119
Query: 120 DGRILVSCGTDCTVKLWNV 138
D R +VS G D +++WNV
Sbjct: 120 DNRQIVSGGRDNALRVWNV 138
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 47/94 (50%), Gaps = 20/94 (21%)
Query: 62 LDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRR------TVCQYSG-------- 107
L GHR I ++ +P Y + S D ++LWD+ RR T+ Q++G
Sbjct: 182 LQGHRQEILAVSWSPRYDYILATASADSRVKLWDV--RRASGCLITLDQHNGKKSQAVES 239
Query: 108 ----HQGAVRGLTVSTDGRILVSCGTDCTVKLWN 137
H G V GL ++DG L++ GTD ++LWN
Sbjct: 240 ANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWN 273
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 59/308 (19%), Positives = 115/308 (37%), Gaps = 39/308 (12%)
Query: 65 HRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANR--------RTVCQYSGHQGAVRGLT 116
H GI+ + P + SG DG I L+D+ N + VC V +
Sbjct: 42 HGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYS 101
Query: 117 VST------DGRILVSCGTDCTVKLWNV-PVATLXXXXXXXXXXXEPLAVYVWKNSFWAV 169
V T D + S D T+K+W+ + T ++ K+ AV
Sbjct: 102 VETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAV 161
Query: 170 DHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSIT 229
T G +V + + + Q +++V ++P +LAT ++D +
Sbjct: 162 ---------GTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVK 212
Query: 230 LYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTG 289
L+D+R +S + + N +K + + H V + ++ G +T
Sbjct: 213 LWDVRRASGCLITLDQHN---------GKKSQAVESANTAHNGKVNGLCFTSDGLHLLTV 263
Query: 290 SYDRTIRIFQYNGGRSREIYHTK-----RMQRVFCVKFSCDASYVISGSDDTNLRLWKAK 344
D +R++ + G + + + K + F V C + +V T + ++
Sbjct: 264 GTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGST-IAVYTVY 322
Query: 345 ASEQLGVL 352
+ EQ+ +L
Sbjct: 323 SGEQITML 330
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 61 ALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTD 120
+LD I +A +P+ K SG++DG I ++DIA + + GH +R LT S D
Sbjct: 159 SLDTRGKFILSIAYSPDG-KYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPD 217
Query: 121 GRILVSCGTDCTVKLWNVPVATL 143
++LV+ D +K+++V A L
Sbjct: 218 SQLLVTASDDGYIKIYDVQHANL 240
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 65/302 (21%), Positives = 129/302 (42%), Gaps = 40/302 (13%)
Query: 65 HRDGISCMAKNPNYLKG---FFSGSMDGDIRLWDIANRRTVCQYS--GHQGAVRGLTVST 119
H D I +A N + +GS+D +++W + R Q+S GHQ V + +S
Sbjct: 31 HDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISH 90
Query: 120 DGRILVSCGTDCTVKLWNVPVATLXXXXXXXXXXXEPLAVYVWKNSFWAVDHQWEGDLFA 179
I S D ++LW++ + V W +F + D Q+
Sbjct: 91 TLPIAASSSLDAHIRLWDLE-------NGKQIKSIDAGPVDAWTLAF-SPDSQYLAT--G 140
Query: 180 TAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMS--- 236
T +V+I+ + S ++S+ ++P + LA+ A D I ++D+
Sbjct: 141 THVGKVNIFGVESGKKEYSLDTRGKFILSIAYSP-DGKYLASGAIDGIINIFDIATGKLL 199
Query: 237 ---------------SPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSP 281
SP ++++ A++D YD + + A + GH S V+++ + P
Sbjct: 200 HTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLS-GHASWVLNVAFCP 258
Query: 282 TGREFVTGSYDRTIRIFQYNGGRSREIYHT--KRMQRVFCVKFSCDASYVISGSDDTNLR 339
FV+ S D++++++ +R HT +V+ VK++ + S ++S DD +
Sbjct: 259 DDTHFVSSSSDKSVKVWDVG---TRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIH 315
Query: 340 LW 341
++
Sbjct: 316 IY 317
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 60 GALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVST 119
G L GH + +A P+ F S S D +++WD+ R V + HQ V G+ +
Sbjct: 242 GTLSGHASWVLNVAFCPDDTH-FVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNG 300
Query: 120 DGRILVSCGTDCTVKLWNVPV 140
+G +VS G D + +++ P+
Sbjct: 301 NGSKIVSVGDDQEIHIYDCPI 321
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%)
Query: 83 FSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNV 138
FS DG+I +WD+ N+ V Q+ GH + +S DG L + G D TV+ W++
Sbjct: 157 FSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDL 212
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/289 (19%), Positives = 109/289 (37%), Gaps = 36/289 (12%)
Query: 69 ISCMAKNPNYLKGFFSGSMDGDIRLWDIA---NRRTVCQYS--GHQGAVRGLTVSTDGRI 123
+ C N + ++G G +++WDI+ N+ V Q +R + DG
Sbjct: 53 VVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCT 111
Query: 124 LVSCGTDCTVKLWNVPVATLXXXXXXXXXXXEPLAVYVWKNSFWAVDHQWEGDLFATAGA 183
L+ G T+ +W++ T A+ + +S +G+
Sbjct: 112 LIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGN------- 164
Query: 184 QVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMS------- 236
+ +W+ + + FQ TD + + + L T D ++ +DLR
Sbjct: 165 -IAVWDLHNQTLVRQFQGHTDGASCIDIS-NDGTKLWTGGLDNTVRSWDLREGRQLQQHD 222
Query: 237 ----------SPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREF 286
P + + E N K D+ + +H+ HES V+ + ++ G+ F
Sbjct: 223 FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ-LHL-HESCVLSLKFAYCGKWF 280
Query: 287 VTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDD 335
V+ D + ++ G S I+ +K V S D Y+++GS D
Sbjct: 281 VSTGKDNLLNAWRTPYGAS--IFQSKESSSVLSCDISVDDKYIVTGSGD 327
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 48/130 (36%), Gaps = 11/130 (8%)
Query: 237 SPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIR 296
SP KV D N +D + GH ID S G + TG D T+R
Sbjct: 150 SPDSKVCFSCCSDGNIAVWDLHNQTLVR-QFQGHTDGASCIDISNDGTKLWTGGLDNTVR 208
Query: 297 IFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLHPRE 356
+ G R++ ++F + + ++ G + +N+ E L V P +
Sbjct: 209 SWDLREG--RQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNV--------EVLHVNKPDK 258
Query: 357 QRKHAYHEAV 366
+ H + V
Sbjct: 259 YQLHLHESCV 268
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 87/213 (40%), Gaps = 22/213 (10%)
Query: 107 GHQGAVRGLTVSTD-GRILVSCGTDCTVKLWNVPVATLXXXXXXXXXXXEPLAVYVWKNS 165
GHQ GL+ + + L+S D T+ LW++ AT V ++
Sbjct: 183 GHQKEGYGLSWNPNLNGYLLSASDDHTICLWDIN-ATPKEHRVIDAKNIFTGHTAVVEDV 241
Query: 166 FWAVDHQWEGDLFATAG--AQVDIW---NHNRSQPINSFQWGTDTVISVRFNPAEPNVLA 220
W + H+ LF + ++ IW N+N S+P ++ T V + FNP +LA
Sbjct: 242 AWHLLHE---SLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILA 298
Query: 221 TTASDRSITLYDLR--------MSSPARKVIMRA----NEDCNCYSYDSRKLDEAKCVHM 268
T ++D+++ L+DLR S ++ NE S R+L +
Sbjct: 299 TGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKI 358
Query: 269 GHESAVMDIDYSPTGREFVTGSYDRTIRIFQYN 301
G E + D + P F+ G + I F +N
Sbjct: 359 GEEQSTEDAEDGPPELLFIHGGHTAKISDFSWN 391
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 61 ALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIAN-RRTVCQYSGHQGAVRGLTVST 119
+D H ++C++ NP +GS D + LWD+ N + + + H+ + + S
Sbjct: 276 TVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSP 335
Query: 120 DGR-ILVSCGTDCTVKLWNV 138
IL S GTD + +W++
Sbjct: 336 HNETILASSGTDRRLHVWDL 355
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 87/213 (40%), Gaps = 22/213 (10%)
Query: 107 GHQGAVRGLTVSTD-GRILVSCGTDCTVKLWNVPVATLXXXXXXXXXXXEPLAVYVWKNS 165
GHQ GL+ + + L+S D T+ LW++ AT V ++
Sbjct: 179 GHQKEGYGLSWNPNLNGYLLSASDDHTICLWDIN-ATPKEHRVIDAKNIFTGHTAVVEDV 237
Query: 166 FWAVDHQWEGDLFATAG--AQVDIW---NHNRSQPINSFQWGTDTVISVRFNPAEPNVLA 220
W + H+ LF + ++ IW N+N S+P ++ T V + FNP +LA
Sbjct: 238 AWHLLHE---SLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILA 294
Query: 221 TTASDRSITLYDLR--------MSSPARKVIMRA----NEDCNCYSYDSRKLDEAKCVHM 268
T ++D+++ L+DLR S ++ NE S R+L +
Sbjct: 295 TGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKI 354
Query: 269 GHESAVMDIDYSPTGREFVTGSYDRTIRIFQYN 301
G E + D + P F+ G + I F +N
Sbjct: 355 GEEQSTEDAEDGPPELLFIHGGHTAKISDFSWN 387
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 61 ALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRT-VCQYSGHQGAVRGLTVST 119
+D H ++C++ NP +GS D + LWD+ N + + + H+ + + S
Sbjct: 272 TVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSP 331
Query: 120 DGR-ILVSCGTDCTVKLWNV 138
IL S GTD + +W++
Sbjct: 332 HNETILASSGTDRRLHVWDL 351
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 87/213 (40%), Gaps = 22/213 (10%)
Query: 107 GHQGAVRGLTVSTD-GRILVSCGTDCTVKLWNVPVATLXXXXXXXXXXXEPLAVYVWKNS 165
GHQ GL+ + + L+S D T+ LW++ AT V ++
Sbjct: 181 GHQKEGYGLSWNPNLNGYLLSASDDHTICLWDIN-ATPKEHRVIDAKNIFTGHTAVVEDV 239
Query: 166 FWAVDHQWEGDLFATAG--AQVDIW---NHNRSQPINSFQWGTDTVISVRFNPAEPNVLA 220
W + H+ LF + ++ IW N+N S+P ++ T V + FNP +LA
Sbjct: 240 AWHLLHE---SLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILA 296
Query: 221 TTASDRSITLYDLR--------MSSPARKVIMRA----NEDCNCYSYDSRKLDEAKCVHM 268
T ++D+++ L+DLR S ++ NE S R+L +
Sbjct: 297 TGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKI 356
Query: 269 GHESAVMDIDYSPTGREFVTGSYDRTIRIFQYN 301
G E + D + P F+ G + I F +N
Sbjct: 357 GEEQSTEDAEDGPPELLFIHGGHTAKISDFSWN 389
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 62 LDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRT-VCQYSGHQGAVRGLTVSTD 120
+D H ++C++ NP +GS D + LWD+ N + + + H+ + + S
Sbjct: 275 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH 334
Query: 121 GR-ILVSCGTDCTVKLWNV 138
IL S GTD + +W++
Sbjct: 335 NETILASSGTDRRLHVWDL 353
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/225 (22%), Positives = 95/225 (42%), Gaps = 29/225 (12%)
Query: 80 KGFFSGSMDGDIRLWDIANRRTV-----CQYSGHQGAVRGLTVSTDGRILVSCGTDCTVK 134
KG S G + LW+I + ++ +Y H V+ L+V +DG VS G D +VK
Sbjct: 106 KGILVASDSGAVELWEILEKESLLVNKFAKYE-HDDIVKTLSVFSDGTQAVSGGKDFSVK 164
Query: 135 LWNVPVATLXXXXXXXXXXXEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNR 192
+W++ + +A K++ +F + G ++ +W+ +
Sbjct: 165 VWDLSQKAVLKSYNAHSSEVNCVAACPGKDT-----------IFLSCGEDGRILLWDTRK 213
Query: 193 SQPINSFQW-GTDTV-ISVRFNPAEPNVLATTASDRSITLYDLRMSSPAR-KVIMRANED 249
+P + +DT+ SV ++P + + A +++L +++ A+ + N
Sbjct: 214 PKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNIT 273
Query: 250 CNCYSYDSRKLDEAKCVHMGHESAVMDIDYSP-----TGREFVTG 289
YSY S + AV+D D+S + R+FVTG
Sbjct: 274 GLAYSYHSSPF--LASISEDCTVAVLDADFSEVFRDLSHRDFVTG 316
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 93/236 (39%), Gaps = 34/236 (14%)
Query: 84 SGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTD-GRILVSCGTDCTVKLWNVPVAT 142
SG + D+RL GHQ GL+ + + L+S D T+ LW++
Sbjct: 164 SGECNPDLRL------------RGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVP 211
Query: 143 LXXXXXXXXXXXEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWN---HNRSQPIN 197
V ++ W + H+ LF + ++ IW+ +N S+P +
Sbjct: 212 KEGKVVDAKTIFTGHTAVV-EDVSWHLLHE---SLFGSVADDQKLMIWDTRSNNTSKPSH 267
Query: 198 SFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLR--------MSSPARKVIMRA--- 246
S T V + FNP +LAT ++D+++ L+DLR S ++
Sbjct: 268 SVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSP 327
Query: 247 -NEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYN 301
NE S R+L+ +G E + D + P F+ G + I F +N
Sbjct: 328 HNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWN 383
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 55/248 (22%), Positives = 96/248 (38%), Gaps = 45/248 (18%)
Query: 83 FSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVP--- 139
S S D +RLWD+A T ++ GH+ V + + +++S D T+K+W +
Sbjct: 81 LSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQC 140
Query: 140 VATLXXXXXXXXXXXEPLAVYVWKNSFWAVDHQWEGD-----LFATAGAQVDIWNHNRSQ 194
+ATL L W + V ++ D + A V WN N+ Q
Sbjct: 141 LATL-------------LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ 187
Query: 195 PINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMS-----------------S 237
F G ++ I+ + ++A+ D I L++L S
Sbjct: 188 IEADFI-GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFS 246
Query: 238 PARKVIMRANE-DCNCYSYDSRKL-DEAKCVHMGHESA----VMDIDYSPTGREFVTGSY 291
P R + A +S D + L D+ + G+ +A + + +S G+ G
Sbjct: 247 PNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSAAAEPHAVSLAWSADGQTLFAGYT 306
Query: 292 DRTIRIFQ 299
D IR++Q
Sbjct: 307 DNVIRVWQ 314
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/140 (21%), Positives = 59/140 (42%), Gaps = 21/140 (15%)
Query: 206 VISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKC 265
V S+ + +PN+L + + D+++ + L V +R+ +
Sbjct: 20 VTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFK----------------- 62
Query: 266 VHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCD 325
GH V D + G ++ S+D+T+R++ G + + + + V V
Sbjct: 63 ---GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHK-SDVMSVDIDKK 118
Query: 326 ASYVISGSDDTNLRLWKAKA 345
AS +ISGS D +++W K
Sbjct: 119 ASMIISGSRDKTIKVWTIKG 138
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 55/269 (20%), Positives = 99/269 (36%), Gaps = 38/269 (14%)
Query: 60 GALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRT-----VCQYSGHQGAVRG 114
G L+GH ++ +A + S S D + W + V + GH V+
Sbjct: 11 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQD 70
Query: 115 LTVSTDGRILVSCGTDCTVKLWNVPVATLXXXXXXXXXXXEPLAVYVWKNSFWAVDHQWE 174
T++ DG +S D T++LW+ VAT + ++V +D +
Sbjct: 71 CTLTADGAYALSASWDKTLRLWD--VATGETYQRFVGHKSDVMSV--------DIDKKAS 120
Query: 175 GDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLR 234
+ + + +W + Q + + D V VR P E A D S+T
Sbjct: 121 MIISGSRDKTIKVWTI-KGQCLATLLGHNDWVSQVRVVPNEK------ADDDSVT----- 168
Query: 235 MSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRT 294
I+ A D +++ + + + +GH S + + SP G + D
Sbjct: 169 --------IISAGNDKMVKAWNLNQF-QIEADFIGHNSNINTLTASPDGTLIASAGKDGE 219
Query: 295 IRIFQYNGGRSREIYHTKRMQRVFCVKFS 323
I + +N + +Y VF + FS
Sbjct: 220 IML--WNLAAKKAMYTLSAQDEVFSLAFS 246
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 54/236 (22%), Positives = 93/236 (39%), Gaps = 34/236 (14%)
Query: 84 SGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTD-GRILVSCGTDCTVKLWNVPVAT 142
SG + D+RL GHQ GL+ +++ L+S D TV LW++
Sbjct: 166 SGECNPDLRL------------RGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGP 213
Query: 143 LXXXXXXXXXXXEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWN---HNRSQPIN 197
+ V ++ W + H+ LF + ++ IW+ + S+P +
Sbjct: 214 KEGKIVDAKAIFTGHSAVV-EDVAWHLLHE---SLFGSVADDQKLXIWDTRSNTTSKPSH 269
Query: 198 SFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLR--------MSSPARKVIM----R 245
T V + FNP +LAT ++D+++ L+DLR S ++
Sbjct: 270 LVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSP 329
Query: 246 ANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYN 301
NE S R+L+ +G E + D + P F+ G + I F +N
Sbjct: 330 HNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWN 385
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 55/248 (22%), Positives = 95/248 (38%), Gaps = 45/248 (18%)
Query: 83 FSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVP--- 139
S S D +RLWD+A T ++ GH+ V + + +++S D T+K+W +
Sbjct: 81 LSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQC 140
Query: 140 VATLXXXXXXXXXXXEPLAVYVWKNSFWAVDHQWEGD-----LFATAGAQVDIWNHNRSQ 194
+ATL L W + V ++ D + A V WN N+ Q
Sbjct: 141 LATL-------------LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ 187
Query: 195 PINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMS-----------------S 237
F G ++ I+ + ++A+ D I L++L S
Sbjct: 188 IEADFI-GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFS 246
Query: 238 PARKVIMRANE-DCNCYSYDSRKL-DEAKCVHMGHESA----VMDIDYSPTGREFVTGSY 291
P R + A +S D + L D+ + G+ A + + +S G+ G
Sbjct: 247 PNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYT 306
Query: 292 DRTIRIFQ 299
D IR++Q
Sbjct: 307 DNVIRVWQ 314
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/269 (20%), Positives = 99/269 (36%), Gaps = 38/269 (14%)
Query: 60 GALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRT-----VCQYSGHQGAVRG 114
G L+GH ++ +A + S S D + W + V + GH V+
Sbjct: 11 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQD 70
Query: 115 LTVSTDGRILVSCGTDCTVKLWNVPVATLXXXXXXXXXXXEPLAVYVWKNSFWAVDHQWE 174
T++ DG +S D T++LW+ VAT + ++V +D +
Sbjct: 71 CTLTADGAYALSASWDKTLRLWD--VATGETYQRFVGHKSDVMSV--------DIDKKAS 120
Query: 175 GDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLR 234
+ + + +W + Q + + D V VR P E A D S+T
Sbjct: 121 MIISGSRDKTIKVWTI-KGQCLATLLGHNDWVSQVRVVPNEK------ADDDSVT----- 168
Query: 235 MSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRT 294
I+ A D +++ + + + +GH S + + SP G + D
Sbjct: 169 --------IISAGNDKMVKAWNLNQF-QIEADFIGHNSNINTLTASPDGTLIASAGKDGE 219
Query: 295 IRIFQYNGGRSREIYHTKRMQRVFCVKFS 323
I + +N + +Y VF + FS
Sbjct: 220 IML--WNLAAKKAMYTLSAQDEVFSLAFS 246
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/140 (21%), Positives = 59/140 (42%), Gaps = 21/140 (15%)
Query: 206 VISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKC 265
V S+ + +PN+L + + D+++ + L V +R+ +
Sbjct: 20 VTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFK----------------- 62
Query: 266 VHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCD 325
GH V D + G ++ S+D+T+R++ G + + + + V V
Sbjct: 63 ---GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHK-SDVMSVDIDKK 118
Query: 326 ASYVISGSDDTNLRLWKAKA 345
AS +ISGS D +++W K
Sbjct: 119 ASMIISGSRDKTIKVWTIKG 138
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 55/248 (22%), Positives = 95/248 (38%), Gaps = 45/248 (18%)
Query: 83 FSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVP--- 139
S S D +RLWD+A T ++ GH+ V + + +++S D T+K+W +
Sbjct: 75 LSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQC 134
Query: 140 VATLXXXXXXXXXXXEPLAVYVWKNSFWAVDHQWEGD-----LFATAGAQVDIWNHNRSQ 194
+ATL L W + V ++ D + A V WN N+ Q
Sbjct: 135 LATL-------------LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ 181
Query: 195 PINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMS-----------------S 237
F G ++ I+ + ++A+ D I L++L S
Sbjct: 182 IEADFI-GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFS 240
Query: 238 PARKVIMRANE-DCNCYSYDSRKL-DEAKCVHMGHESA----VMDIDYSPTGREFVTGSY 291
P R + A +S D + L D+ + G+ A + + +S G+ G
Sbjct: 241 PNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYT 300
Query: 292 DRTIRIFQ 299
D IR++Q
Sbjct: 301 DNVIRVWQ 308
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/140 (21%), Positives = 59/140 (42%), Gaps = 21/140 (15%)
Query: 206 VISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKC 265
V S+ + +PN+L + + D+++ + L V +R+ +
Sbjct: 14 VTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFK----------------- 56
Query: 266 VHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCD 325
GH V D + G ++ S+D+T+R++ G + + + + V V
Sbjct: 57 ---GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHK-SDVMSVDIDKK 112
Query: 326 ASYVISGSDDTNLRLWKAKA 345
AS +ISGS D +++W K
Sbjct: 113 ASMIISGSRDKTIKVWTIKG 132
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/269 (20%), Positives = 99/269 (36%), Gaps = 38/269 (14%)
Query: 60 GALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRT-----VCQYSGHQGAVRG 114
G L+GH ++ +A + S S D + W + V + GH V+
Sbjct: 5 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQD 64
Query: 115 LTVSTDGRILVSCGTDCTVKLWNVPVATLXXXXXXXXXXXEPLAVYVWKNSFWAVDHQWE 174
T++ DG +S D T++LW+ VAT + ++V +D +
Sbjct: 65 CTLTADGAYALSASWDKTLRLWD--VATGETYQRFVGHKSDVMSV--------DIDKKAS 114
Query: 175 GDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLR 234
+ + + +W + Q + + D V VR P E A D S+T
Sbjct: 115 MIISGSRDKTIKVWTI-KGQCLATLLGHNDWVSQVRVVPNEK------ADDDSVT----- 162
Query: 235 MSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRT 294
I+ A D +++ + + + +GH S + + SP G + D
Sbjct: 163 --------IISAGNDKMVKAWNLNQF-QIEADFIGHNSNINTLTASPDGTLIASAGKDGE 213
Query: 295 IRIFQYNGGRSREIYHTKRMQRVFCVKFS 323
I + +N + +Y VF + FS
Sbjct: 214 IML--WNLAAKKAMYTLSAQDEVFSLAFS 240
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 55/248 (22%), Positives = 95/248 (38%), Gaps = 45/248 (18%)
Query: 83 FSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVP--- 139
S S D +RLWD+A T ++ GH+ V + + +++S D T+K+W +
Sbjct: 81 LSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQC 140
Query: 140 VATLXXXXXXXXXXXEPLAVYVWKNSFWAVDHQWEGD-----LFATAGAQVDIWNHNRSQ 194
+ATL L W + V ++ D + A V WN N+ Q
Sbjct: 141 LATL-------------LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ 187
Query: 195 PINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMS-----------------S 237
F G ++ I+ + ++A+ D I L++L S
Sbjct: 188 IEADFI-GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFS 246
Query: 238 PARKVIMRANE-DCNCYSYDSRKL-DEAKCVHMGHESA----VMDIDYSPTGREFVTGSY 291
P R + A +S D + L D+ + G+ A + + +S G+ G
Sbjct: 247 PNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYT 306
Query: 292 DRTIRIFQ 299
D IR++Q
Sbjct: 307 DNVIRVWQ 314
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/269 (20%), Positives = 99/269 (36%), Gaps = 38/269 (14%)
Query: 60 GALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRT-----VCQYSGHQGAVRG 114
G L+GH ++ +A + S S D + W + V + GH V+
Sbjct: 11 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQD 70
Query: 115 LTVSTDGRILVSCGTDCTVKLWNVPVATLXXXXXXXXXXXEPLAVYVWKNSFWAVDHQWE 174
T++ DG +S D T++LW+ VAT + ++V +D +
Sbjct: 71 CTLTADGAYALSASWDKTLRLWD--VATGETYQRFVGHKSDVMSV--------DIDKKAS 120
Query: 175 GDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLR 234
+ + + +W + Q + + D V VR P E A D S+T
Sbjct: 121 MIISGSRDKTIKVWTI-KGQCLATLLGHNDWVSQVRVVPNEK------ADDDSVT----- 168
Query: 235 MSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRT 294
I+ A D +++ + + + +GH S + + SP G + D
Sbjct: 169 --------IISAGNDKMVKAWNLNQF-QIEADFIGHNSNINTLTASPDGTLIASAGKDGE 219
Query: 295 IRIFQYNGGRSREIYHTKRMQRVFCVKFS 323
I + +N + +Y VF + FS
Sbjct: 220 IML--WNLAAKKAMYTLSAQDEVFSLAFS 246
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/140 (21%), Positives = 59/140 (42%), Gaps = 21/140 (15%)
Query: 206 VISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKC 265
V S+ + +PN+L + + D+++ + L V +R+ +
Sbjct: 20 VTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFK----------------- 62
Query: 266 VHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCD 325
GH V D + G ++ S+D+T+R++ G + + + + V V
Sbjct: 63 ---GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHK-SDVMSVDIDKK 118
Query: 326 ASYVISGSDDTNLRLWKAKA 345
AS +ISGS D +++W K
Sbjct: 119 ASMIISGSRDKTIKVWTIKG 138
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 55/248 (22%), Positives = 95/248 (38%), Gaps = 45/248 (18%)
Query: 83 FSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVP--- 139
S S D +RLWD+A T ++ GH+ V + + +++S D T+K+W +
Sbjct: 81 LSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQC 140
Query: 140 VATLXXXXXXXXXXXEPLAVYVWKNSFWAVDHQWEGD-----LFATAGAQVDIWNHNRSQ 194
+ATL L W + V ++ D + A V WN N+ Q
Sbjct: 141 LATL-------------LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ 187
Query: 195 PINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMS-----------------S 237
F G ++ I+ + ++A+ D I L++L S
Sbjct: 188 IEADFI-GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFS 246
Query: 238 PARKVIMRANE-DCNCYSYDSRKL-DEAKCVHMGHESA----VMDIDYSPTGREFVTGSY 291
P R + A +S D + L D+ + G+ A + + +S G+ G
Sbjct: 247 PNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYT 306
Query: 292 DRTIRIFQ 299
D IR++Q
Sbjct: 307 DNVIRVWQ 314
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/140 (21%), Positives = 59/140 (42%), Gaps = 21/140 (15%)
Query: 206 VISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKC 265
V S+ + +PN+L + + D+++ + L V +R+ +
Sbjct: 20 VTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFK----------------- 62
Query: 266 VHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCD 325
GH V D + G ++ S+D+T+R++ G + + + + V V
Sbjct: 63 ---GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHK-SDVMSVDIDKK 118
Query: 326 ASYVISGSDDTNLRLWKAKA 345
AS +ISGS D +++W K
Sbjct: 119 ASMIISGSRDKTIKVWTIKG 138
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/269 (20%), Positives = 99/269 (36%), Gaps = 38/269 (14%)
Query: 60 GALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRT-----VCQYSGHQGAVRG 114
G L+GH ++ +A + S S D + W + V + GH V+
Sbjct: 11 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQD 70
Query: 115 LTVSTDGRILVSCGTDCTVKLWNVPVATLXXXXXXXXXXXEPLAVYVWKNSFWAVDHQWE 174
T++ DG +S D T++LW+ VAT + ++V +D +
Sbjct: 71 CTLTADGAYALSASWDKTLRLWD--VATGETYQRFVGHKSDVMSV--------DIDKKAS 120
Query: 175 GDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLR 234
+ + + +W + Q + + D V VR P E A D S+T
Sbjct: 121 MIISGSRDKTIKVWTI-KGQCLATLLGHNDWVSQVRVVPNEK------ADDDSVT----- 168
Query: 235 MSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRT 294
I+ A D +++ + + + +GH S + + SP G + D
Sbjct: 169 --------IISAGNDKMVKAWNLNQF-QIEADFIGHNSNINTLTASPDGTLIASAGKDGE 219
Query: 295 IRIFQYNGGRSREIYHTKRMQRVFCVKFS 323
I + +N + +Y VF + FS
Sbjct: 220 IML--WNLAAKKAMYTLSAQDEVFSLAFS 246
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/236 (22%), Positives = 93/236 (39%), Gaps = 34/236 (14%)
Query: 84 SGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTD-GRILVSCGTDCTVKLWNVPVAT 142
SG + D+RL GHQ GL+ +++ L+S D TV LW++
Sbjct: 166 SGECNPDLRL------------RGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGP 213
Query: 143 LXXXXXXXXXXXEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWN---HNRSQPIN 197
+ V ++ W + H+ LF + ++ IW+ + S+P +
Sbjct: 214 KEGKIVDAKAIFTGHSAVV-EDVAWHLLHE---SLFGSVADDQKLMIWDTRSNTTSKPSH 269
Query: 198 SFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLR--------MSSPARKVIM----R 245
T V + FNP +LAT ++D+++ L+DLR S ++
Sbjct: 270 LVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSP 329
Query: 246 ANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYN 301
NE S R+L+ +G E + D + P F+ G + I F +N
Sbjct: 330 HNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWN 385
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 58 FIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTV 117
F+G L GH + ++ + N + SGS D + +WD+A + + SGH +
Sbjct: 262 FVGVLRGHXASVRTVSGHGNIV---VSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIY 318
Query: 118 STDGRILVSCGTDCTVKLWNVPVATL 143
+ + +S D T+++W++ L
Sbjct: 319 DHERKRCISASXDTTIRIWDLENGEL 344
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 69/162 (42%), Gaps = 36/162 (22%)
Query: 203 TDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDE 262
T + ++F E N + T A D+ I +YD S +K +++ +
Sbjct: 122 TSVITCLQF---EDNYVITGADDKXIRVYD----SINKKFLLQLS--------------- 159
Query: 263 AKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIY--HTKRMQRVFCV 320
GH+ V + Y+ G V+GS DRT+R++ G ++ H ++ + V
Sbjct: 160 ------GHDGGVWALKYAHGGI-LVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIV 212
Query: 321 KFSCDASYVISGSDDTNLRLWKAKASEQLGVLHPREQRKHAY 362
++ + Y+++GS D L +WK + P +H Y
Sbjct: 213 EYK-NIKYIVTGSRDNTLHVWKLPKESSV----PDHGEEHDY 249
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 8/88 (9%)
Query: 56 RPFIGALDGHRDGISCMAKNPNYLKG--FFSGSMDGDIRLWDIANRRTVCQYSGHQGAVR 113
+ F+ L GH G+ + Y G SGS D +R+WDI + GH VR
Sbjct: 152 KKFLLQLSGHDGGVWALK----YAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVR 207
Query: 114 GLTVSTDGRI--LVSCGTDCTVKLWNVP 139
L + I +V+ D T+ +W +P
Sbjct: 208 CLDIVEYKNIKYIVTGSRDNTLHVWKLP 235
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Query: 62 LDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDG 121
L GH D I + K S S D IR+WD+ N GH V L +S
Sbjct: 306 LSGHTDRIYSTIYDHER-KRCISASXDTTIRIWDLENGELXYTLQGHTALVGLLRLSD-- 362
Query: 122 RILVSCGTDCTVKLWN 137
+ LVS D +++ W+
Sbjct: 363 KFLVSAAADGSIRGWD 378
Score = 31.6 bits (70), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Query: 269 GHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASY 328
GH ++V + S G V+GSYD T+ ++ + I + R++ + +
Sbjct: 268 GHXASVRTV--SGHGNIVVSGSYDNTLIVWDVAQXKCLYIL-SGHTDRIYSTIYDHERKR 324
Query: 329 VISGSDDTNLRLWKAKASE 347
IS S DT +R+W + E
Sbjct: 325 CISASXDTTIRIWDLENGE 343
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 70/313 (22%), Positives = 113/313 (36%), Gaps = 50/313 (15%)
Query: 82 FFSGSMDGDIRLWDIANRRTVCQYS-------GHQGAVRGLTVSTDGRILVSCGTDCTVK 134
F S DG I L++ + + H G+V GLT S DG + S D T+K
Sbjct: 205 FASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIK 264
Query: 135 LWNV---------PVATLXXXXXXXXXXXEPLAVYVWKNSF--------WAVD-----HQ 172
+WNV PV T + V + N F ++D H
Sbjct: 265 IWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHN 324
Query: 173 WEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYD 232
+++ +++ + INS W T IS N P+V AT +
Sbjct: 325 KAITALSSSADGKTLFSADAEGHINS--WDISTGIS---NRVFPDVHAT-------MITG 372
Query: 233 LRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYD 292
++ +S + ++ +D +K V S + + S G V Y
Sbjct: 373 IKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYK 432
Query: 293 RTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWK---AKASEQL 349
I Y+ G+ E+ + CV S D +V G D+ + ++K A SE
Sbjct: 433 ---HIAIYSHGKLTEVPISYNSS---CVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVK 486
Query: 350 GVLHPREQRKHAY 362
++HP E A+
Sbjct: 487 TIVHPAEITSVAF 499
Score = 35.4 bits (80), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 19/103 (18%)
Query: 197 NSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYD 256
++F T V SVR+NP + ++ A+T D +I LY+ + D
Sbjct: 184 STFGEHTKFVHSVRYNP-DGSLFASTGGDGTIVLYN-----------GVDGTKTGVFEDD 231
Query: 257 SRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQ 299
S K ++ H +V + +SP G + + S D+TI+I+
Sbjct: 232 SLK-------NVAHSGSVFGLTWSPDGTKIASASADKTIKIWN 267
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/77 (22%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 65 HRDGISCMAKNPNYLKGFFSGSMDGDIRLWDI--ANRRTVCQYSGHQGAVRGLTVSTDGR 122
H ++C++ +P+ ++ +GS+D + +W++ + + H + + +
Sbjct: 535 HTAKVACVSWSPDNVR-LATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNET 593
Query: 123 ILVSCGTDCTVKLWNVP 139
+VS G D +K WNVP
Sbjct: 594 TIVSAGQDSNIKFWNVP 610
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/107 (18%), Positives = 47/107 (43%), Gaps = 6/107 (5%)
Query: 240 RKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQ 299
++ + +D + Y ++ + H + + + +S G V + D++ ++
Sbjct: 460 KQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLV--ATDQSRKVIP 517
Query: 300 YNGGRSREIYHTK----RMQRVFCVKFSCDASYVISGSDDTNLRLWK 342
Y+ + E+ HT +V CV +S D + +GS D ++ +W
Sbjct: 518 YSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWN 564
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/248 (22%), Positives = 94/248 (37%), Gaps = 45/248 (18%)
Query: 83 FSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVP--- 139
S S D +RLWD+A T ++ GH+ V + + ++S D T+K+W +
Sbjct: 81 LSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVWTIKGQC 140
Query: 140 VATLXXXXXXXXXXXEPLAVYVWKNSFWAVDHQWEGD-----LFATAGAQVDIWNHNRSQ 194
+ATL L W + V ++ D + A V WN N+ Q
Sbjct: 141 LATL-------------LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQ 187
Query: 195 PINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMS-----------------S 237
F G ++ I+ + ++A+ D I L++L S
Sbjct: 188 IEADFI-GHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQDEVFSLAFS 246
Query: 238 PARKVIMRANE-DCNCYSYDSRKL-DEAKCVHMGHESA----VMDIDYSPTGREFVTGSY 291
P R + A +S D + L D+ + G+ A + + +S G+ G
Sbjct: 247 PNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYT 306
Query: 292 DRTIRIFQ 299
D IR++Q
Sbjct: 307 DNVIRVWQ 314
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/140 (21%), Positives = 57/140 (40%), Gaps = 21/140 (15%)
Query: 206 VISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKC 265
V S+ + +PN+L + + D+++ + L V +R+
Sbjct: 20 VTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRS------------------- 60
Query: 266 VHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCD 325
GH V D + G ++ S+D+T+R++ G + + + V V
Sbjct: 61 -FKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRF-VGHKSDVXSVDIDKK 118
Query: 326 ASYVISGSDDTNLRLWKAKA 345
AS +ISGS D +++W K
Sbjct: 119 ASXIISGSRDKTIKVWTIKG 138
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 55/269 (20%), Positives = 97/269 (36%), Gaps = 38/269 (14%)
Query: 60 GALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRT-----VCQYSGHQGAVRG 114
G L+GH ++ +A + S S D + W + V + GH V+
Sbjct: 11 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQD 70
Query: 115 LTVSTDGRILVSCGTDCTVKLWNVPVATLXXXXXXXXXXXEPLAVYVWKNSFWAVDHQWE 174
T++ DG +S D T++LW+ VAT + +V +D +
Sbjct: 71 CTLTADGAYALSASWDKTLRLWD--VATGETYQRFVGHKSDVXSV--------DIDKKAS 120
Query: 175 GDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLR 234
+ + + +W + Q + + D V VR P E A D S+T
Sbjct: 121 XIISGSRDKTIKVWTI-KGQCLATLLGHNDWVSQVRVVPNEK------ADDDSVT----- 168
Query: 235 MSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRT 294
I+ A D +++ + + + +GH S + + SP G + D
Sbjct: 169 --------IISAGNDKXVKAWNLNQF-QIEADFIGHNSNINTLTASPDGTLIASAGKDGE 219
Query: 295 IRIFQYNGGRSREIYHTKRMQRVFCVKFS 323
I + +N + Y VF + FS
Sbjct: 220 IXL--WNLAAKKAXYTLSAQDEVFSLAFS 246
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
Query: 52 KIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGA 111
+I + G L GH IS + N K S S DG +R+W N + + GH +
Sbjct: 233 QITEKTPTGKLIGHHGPISVLEFNDTN-KLLLSASDDGTLRIWHGGNGNSQNCFYGHSQS 291
Query: 112 VRGLTVSTDGRILVSCGTDCTVKLWNVPVATL 143
+ + D ++ +SC D +V+LW++ TL
Sbjct: 292 IVSASWVGDDKV-ISCSMDGSVRLWSLKQNTL 322
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 39/196 (19%), Positives = 78/196 (39%), Gaps = 25/196 (12%)
Query: 177 LFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMS 236
L+ GA +++ N +R+ PI S +W D + + +L S + ++L+
Sbjct: 134 LWNKTGALLNVLNFHRA-PIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELK-E 191
Query: 237 SPARKVIMRANEDCNCYSYDSRKLDEAKCV---------------------HMGHESAVM 275
+ + + D +D+ K V +GH +
Sbjct: 192 TGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPIS 251
Query: 276 DIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDD 335
++++ T + ++ S D T+RI+ G S+ ++ Q + + D VIS S D
Sbjct: 252 VLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFY-GHSQSIVSASWVGD-DKVISCSMD 309
Query: 336 TNLRLWKAKASEQLGV 351
++RLW K + L +
Sbjct: 310 GSVRLWSLKQNTLLAL 325
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 312 KRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLH 353
K +V C+ +S D + +++G ++ LRLW K L VL+
Sbjct: 106 KTTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLN 146
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 72/195 (36%), Gaps = 50/195 (25%)
Query: 219 LATTASDRSITLYDLRMS------------SPARKVI----MRANEDCNCYSYDSRKLD- 261
LAT +SDRS+ ++D+R P +V M N +C SYD + +
Sbjct: 28 LATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASC-SYDRKVIIW 86
Query: 262 -------EAKCVHMGHESAVMDIDYSP--TGREFVTGSYDRTIRIFQYNGGRSREIYHTK 312
E H GH+S+V + ++P G GS D I + Y G E+
Sbjct: 87 REENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKIN 146
Query: 313 RMQRVFCVKFSCDASYV-------------------ISGSDDTNLRLWKAKASEQLGVLH 353
+ C S + V SG D ++LWK + Q
Sbjct: 147 NAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQW---- 202
Query: 354 PREQRKHAYHEAVKN 368
EQ+ A+ + V++
Sbjct: 203 KEEQKLEAHSDWVRD 217
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 38/95 (40%), Gaps = 22/95 (23%)
Query: 60 GALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLW---DIANRRTVCQYSGHQGAVR--- 113
G+L H G + PNY+K F SG D I+LW + + + H VR
Sbjct: 165 GSLIDHPSG-----QKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVA 219
Query: 114 -----GLTVST------DGRILVSCGTDCTVKLWN 137
GL ST DGR+ + D + W+
Sbjct: 220 WAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWS 254
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 64 GHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTD--- 120
GH + I+ + +P S S D +RLW+I V + G +G R +S D
Sbjct: 149 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGH-RDEVLSADYDL 207
Query: 121 -GRILVSCGTDCTVKLWNV 138
G ++SCG D ++KLW +
Sbjct: 208 LGEKIMSCGMDHSLKLWRI 226
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 28/140 (20%), Positives = 58/140 (41%), Gaps = 24/140 (17%)
Query: 167 WAVDHQWEGDLFATAGAQ--VDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTAS 224
W D L A AG++ + I N Q I + + + ++F+P +PN+L + +
Sbjct: 113 WTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSK 172
Query: 225 DRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGR 284
D ++ L++++ + I E GH V+ DY G
Sbjct: 173 DHALRLWNIQTDTLV--AIFGGVE--------------------GHRDEVLSADYDLLGE 210
Query: 285 EFVTGSYDRTIRIFQYNGGR 304
+ ++ D ++++++ N R
Sbjct: 211 KIMSCGMDHSLKLWRINSKR 230
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 64 GHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTD--- 120
GH + I+ + +P S S D +RLW+I V + G +G R +S D
Sbjct: 108 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGH-RDEVLSADYDL 166
Query: 121 -GRILVSCGTDCTVKLWNV 138
G ++SCG D ++KLW +
Sbjct: 167 LGEKIMSCGMDHSLKLWRI 185
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/140 (20%), Positives = 58/140 (41%), Gaps = 24/140 (17%)
Query: 167 WAVDHQWEGDLFATAGAQ--VDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTAS 224
W D L A AG++ + I N Q I + + + ++F+P +PN+L + +
Sbjct: 72 WTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSK 131
Query: 225 DRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGR 284
D ++ L++++ + I E GH V+ DY G
Sbjct: 132 DHALRLWNIQTDTLV--AIFGGVE--------------------GHRDEVLSADYDLLGE 169
Query: 285 EFVTGSYDRTIRIFQYNGGR 304
+ ++ D ++++++ N R
Sbjct: 170 KIMSCGMDHSLKLWRINSKR 189
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 68/149 (45%), Gaps = 6/149 (4%)
Query: 212 NPAEPNVLATTASDRSITLYDLRMSSPARKVIMRAN--EDCNCYSYDSRKLDEAKCVHMG 269
NP + ++ T++ D SI + ++ + D C+ K M
Sbjct: 27 NPMK-DIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQM- 84
Query: 270 HESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREI-YHTKRMQRVFCVKFSCDASY 328
H V+D+ +S G + T S D+T +++ + ++ +I H ++ + +K + + S
Sbjct: 85 HTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIK-APNYSC 143
Query: 329 VISGSDDTNLRLWKAKASEQLGVLHPREQ 357
V++GS D L+ W ++S + VL E+
Sbjct: 144 VMTGSWDKTLKFWDTRSSNPMMVLQLPER 172
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 67 DGISCMAKNPNYLKGFF--SGSMDGDIRLWDIANRRTVCQYSG--HQGAVRGLTVSTDGR 122
D I C++ +P L G F +GS D+R W++ + + H G V + S DG
Sbjct: 40 DSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGS 99
Query: 123 ILVSCGTDCTVKLWNV 138
+ + D T K+W++
Sbjct: 100 KVFTASCDKTAKMWDL 115
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 64 GHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTD--- 120
GH + I+ + +P S S D +RLW+I V + G +G R +S D
Sbjct: 113 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGH-RDEVLSADYDL 171
Query: 121 -GRILVSCGTDCTVKLWNV 138
G ++SCG D ++KLW +
Sbjct: 172 LGEKIMSCGMDHSLKLWRI 190
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/140 (20%), Positives = 58/140 (41%), Gaps = 24/140 (17%)
Query: 167 WAVDHQWEGDLFATAGAQ--VDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTAS 224
W D L A AG++ + I N Q I + + + ++F+P +PN+L + +
Sbjct: 77 WTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSK 136
Query: 225 DRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGR 284
D ++ L++++ + I E GH V+ DY G
Sbjct: 137 DHALRLWNIQTDTLV--AIFGGVE--------------------GHRDEVLSADYDLLGE 174
Query: 285 EFVTGSYDRTIRIFQYNGGR 304
+ ++ D ++++++ N R
Sbjct: 175 KIMSCGMDHSLKLWRINSKR 194
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 64 GHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTD--- 120
GH + I+ + +P S S D +RLW+I V + G +G R +S D
Sbjct: 112 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGH-RDEVLSADYDL 170
Query: 121 -GRILVSCGTDCTVKLWNV 138
G ++SCG D ++KLW +
Sbjct: 171 LGEKIMSCGMDHSLKLWRI 189
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/140 (20%), Positives = 58/140 (41%), Gaps = 24/140 (17%)
Query: 167 WAVDHQWEGDLFATAGAQ--VDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTAS 224
W D L A AG++ + I N Q I + + + ++F+P +PN+L + +
Sbjct: 76 WTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSK 135
Query: 225 DRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGR 284
D ++ L++++ + I E GH V+ DY G
Sbjct: 136 DHALRLWNIQTDTLV--AIFGGVE--------------------GHRDEVLSADYDLLGE 173
Query: 285 EFVTGSYDRTIRIFQYNGGR 304
+ ++ D ++++++ N R
Sbjct: 174 KIMSCGMDHSLKLWRINSKR 193
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 64 GHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTD--- 120
GH + I+ + +P S S D +RLW+I V + G +G R +S D
Sbjct: 112 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGH-RDEVLSADYDL 170
Query: 121 -GRILVSCGTDCTVKLWNV 138
G ++SCG D ++KLW +
Sbjct: 171 LGEKIMSCGMDHSLKLWRI 189
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/140 (20%), Positives = 58/140 (41%), Gaps = 24/140 (17%)
Query: 167 WAVDHQWEGDLFATAGAQ--VDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTAS 224
W D L A AG++ + I N Q I + + + ++F+P +PN+L + +
Sbjct: 76 WTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSK 135
Query: 225 DRSITLYDLRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGR 284
D ++ L++++ + I E GH V+ DY G
Sbjct: 136 DHALRLWNIQTDTLV--AIFGGVE--------------------GHRDEVLSADYDLLGE 173
Query: 285 EFVTGSYDRTIRIFQYNGGR 304
+ ++ D ++++++ N R
Sbjct: 174 KIMSCGMDHSLKLWRINSKR 193
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 57/243 (23%), Positives = 84/243 (34%), Gaps = 58/243 (23%)
Query: 82 FFSGSMDGDIRLWDI-ANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWN--- 137
SGS G I D+ V SGH V GL + DGR L S G D V +W
Sbjct: 213 LSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAP 272
Query: 138 -----VPVATLXXXXXXXXXXXEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVD----IW 188
VP+ T K W W+ ++ AT G D IW
Sbjct: 273 GEGGWVPLQTFTQHQGAV------------KAVAWC---PWQSNVLATGGGTSDRHIRIW 317
Query: 189 NHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANE 248
N +++ V S+ ++P +++ A
Sbjct: 318 NVCSGACLSAVD-AHSQVCSILWSPHYKELISGHG---------------------FAQN 355
Query: 249 DCNCYSYDSR-KLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRI---FQYNGGR 304
+ Y + K+ E K GH S V+ + SP G + + D T+R+ F+ + R
Sbjct: 356 QLVIWKYPTMAKVAELK----GHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPAR 411
Query: 305 SRE 307
RE
Sbjct: 412 RRE 414
Score = 35.8 bits (81), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
Query: 59 IGALDGHRDGISCMAKNPNYLKGFFSGS--MDGDIRLWDIANRRTVCQYSGHQGAVRGLT 116
+ A+D H + + +P+Y K SG + +W V + GH V LT
Sbjct: 325 LSAVDAHSQ-VCSILWSPHY-KELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLT 382
Query: 117 VSTDGRILVSCGTDCTVKLW 136
+S DG + S D T++LW
Sbjct: 383 MSPDGATVASAAADETLRLW 402
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 27/149 (18%), Positives = 56/149 (37%), Gaps = 22/149 (14%)
Query: 215 EPNVLATTASDRSITLYDLR-------MSSPARKV---------IMRANEDCNCYSYDSR 258
E N LA S + L+D++ M+S + +V + + + + +D R
Sbjct: 169 EGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVR 228
Query: 259 KLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREI------YHTK 312
+ GH V + ++P GR +G D + ++ G + H
Sbjct: 229 VAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQG 288
Query: 313 RMQRVFCVKFSCDASYVISGSDDTNLRLW 341
++ V + + G+ D ++R+W
Sbjct: 289 AVKAVAWCPWQSNVLATGGGTSDRHIRIW 317
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 57/243 (23%), Positives = 84/243 (34%), Gaps = 58/243 (23%)
Query: 82 FFSGSMDGDIRLWDI-ANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWN--- 137
SGS G I D+ V SGH V GL + DGR L S G D V +W
Sbjct: 202 LSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAP 261
Query: 138 -----VPVATLXXXXXXXXXXXEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVD----IW 188
VP+ T K W W+ ++ AT G D IW
Sbjct: 262 GEGGWVPLQTFTQHQGAV------------KAVAWC---PWQSNVLATGGGTSDRHIRIW 306
Query: 189 NHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANE 248
N +++ V S+ ++P +++ A
Sbjct: 307 NVCSGACLSAVD-AHSQVCSILWSPHYKELISGHG---------------------FAQN 344
Query: 249 DCNCYSYDSR-KLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRI---FQYNGGR 304
+ Y + K+ E K GH S V+ + SP G + + D T+R+ F+ + R
Sbjct: 345 QLVIWKYPTMAKVAELK----GHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPAR 400
Query: 305 SRE 307
RE
Sbjct: 401 RRE 403
Score = 36.2 bits (82), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
Query: 59 IGALDGHRDGISCMAKNPNYLKGFFSGS--MDGDIRLWDIANRRTVCQYSGHQGAVRGLT 116
+ A+D H + + +P+Y K SG + +W V + GH V LT
Sbjct: 314 LSAVDAHSQ-VCSILWSPHY-KELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLT 371
Query: 117 VSTDGRILVSCGTDCTVKLW 136
+S DG + S D T++LW
Sbjct: 372 MSPDGATVASAAADETLRLW 391
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 27/149 (18%), Positives = 56/149 (37%), Gaps = 22/149 (14%)
Query: 215 EPNVLATTASDRSITLYDLR-------MSSPARKV---------IMRANEDCNCYSYDSR 258
E N LA S + L+D++ M+S + +V + + + + +D R
Sbjct: 158 EGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVR 217
Query: 259 KLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREI------YHTK 312
+ GH V + ++P GR +G D + ++ G + H
Sbjct: 218 VAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQG 277
Query: 313 RMQRVFCVKFSCDASYVISGSDDTNLRLW 341
++ V + + G+ D ++R+W
Sbjct: 278 AVKAVAWCPWQSNVLATGGGTSDRHIRIW 306
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 62/150 (41%), Gaps = 29/150 (19%)
Query: 15 RERSQDLQRVYHNYDPNLRPQEK----AVEYVRALTAAK---LEKIFARPFIGALDGH-- 65
E ++ Y N D NL ++ + R + A K EK+ + + LDGH
Sbjct: 19 EENDENDDEFYINVDKNLNEIKEHKIVVLGNSRGVDAGKGNTFEKVGSHLYKARLDGHDF 78
Query: 66 ------RDGISCMAKNPNY---------LKGFFSGSMDGDIRLWD--IANRRTVCQYSGH 108
RDG S M K +Y ++ F G+ +GDI++ D +R + Q H
Sbjct: 79 LFNTIIRDG-SKMLKRADYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQ--AH 135
Query: 109 QGAVRGLTVSTDGRILVSCGTDCTVKLWNV 138
+ L G L+S D +K+W+V
Sbjct: 136 VSEITKLKFFPSGEALISSSQDMQLKIWSV 165
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 6/66 (9%)
Query: 80 KGFFSGSMDGDIRLW---DIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLW 136
+ S S D +++W D +N RT+ GH+ V + + GR ++S D T++LW
Sbjct: 149 EALISSSQDMQLKIWSVKDGSNPRTLI---GHRATVTDIAIIDRGRNVLSASLDGTIRLW 205
Query: 137 NVPVAT 142
T
Sbjct: 206 ECGTGT 211
Score = 31.6 bits (70), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 284 REFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKA 343
R F+ G+ + I++ N REI + + +KF +IS S D L++W
Sbjct: 107 RRFILGTTEGDIKVLDSNFNLQREI-DQAHVSEITKLKFFPSGEALISSSQDMQLKIWSV 165
Query: 344 K 344
K
Sbjct: 166 K 166
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 268 MGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKR 313
+GH + V DI GR ++ S D TIR+++ G + ++ K
Sbjct: 175 IGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKE 220
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 62/150 (41%), Gaps = 29/150 (19%)
Query: 15 RERSQDLQRVYHNYDPNLRPQEK----AVEYVRALTAAK---LEKIFARPFIGALDGH-- 65
E ++ Y N D NL ++ + R + A K EK+ + + LDGH
Sbjct: 22 EENDENDDEFYINVDKNLNEIKEHKIVVLGNSRGVDAGKGNTFEKVGSHLYKARLDGHDF 81
Query: 66 ------RDGISCMAKNPNY---------LKGFFSGSMDGDIRLWD--IANRRTVCQYSGH 108
RDG S M K +Y ++ F G+ +GDI++ D +R + Q H
Sbjct: 82 LFNTIIRDG-SKMLKRADYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQ--AH 138
Query: 109 QGAVRGLTVSTDGRILVSCGTDCTVKLWNV 138
+ L G L+S D +K+W+V
Sbjct: 139 VSEITKLKFFPSGEALISSSQDMQLKIWSV 168
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 6/66 (9%)
Query: 80 KGFFSGSMDGDIRLW---DIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLW 136
+ S S D +++W D +N RT+ GH+ V + + GR ++S D T++LW
Sbjct: 152 EALISSSQDMQLKIWSVKDGSNPRTLI---GHRATVTDIAIIDRGRNVLSASLDGTIRLW 208
Query: 137 NVPVAT 142
T
Sbjct: 209 ECGTGT 214
Score = 31.6 bits (70), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 284 REFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKA 343
R F+ G+ + I++ N REI + + +KF +IS S D L++W
Sbjct: 110 RRFILGTTEGDIKVLDSNFNLQREI-DQAHVSEITKLKFFPSGEALISSSQDMQLKIWSV 168
Query: 344 K 344
K
Sbjct: 169 K 169
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 268 MGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKR 313
+GH + V DI GR ++ S D TIR+++ G + ++ K
Sbjct: 178 IGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKE 223
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 35.4 bits (80), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 82 FFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVA 141
F S S DG I+L D + Y GH+ V + + +G I VSCG D TV++W+
Sbjct: 198 FISCSNDGLIKLVDXHTGDVLRTYEGHESFVYCIKLLPNGDI-VSCGEDRTVRIWSKENG 256
Query: 142 TL 143
+L
Sbjct: 257 SL 258
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 35.4 bits (80), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 88 DGDIRLWDIANRRTVCQY--SGHQGAVRGLT-VSTDGRILVSCGTDCTVKLWN 137
D I +WD+ N T Q GHQ + L D +L+S G D TV LWN
Sbjct: 239 DPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWN 291
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 4/90 (4%)
Query: 49 KLEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGS--MDGDIRLWDIANRRTVCQYS 106
++ + + + A+D H + + +P+Y K SG + +W V +
Sbjct: 224 RIWNVCSGACLSAVDAHSQ-VCSILWSPHY-KELISGHGFAQNQLVIWKYPTMAKVAELK 281
Query: 107 GHQGAVRGLTVSTDGRILVSCGTDCTVKLW 136
GH V LT+S DG + S D T++LW
Sbjct: 282 GHTSRVLSLTMSPDGATVASAAADETLRLW 311
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 53/230 (23%), Positives = 80/230 (34%), Gaps = 55/230 (23%)
Query: 84 SGSMDGDIRLWDI-ANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWN----- 137
SGS G I D+ V SGH V GL + DGR L S G D V +W
Sbjct: 124 SGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGE 183
Query: 138 ---VPVATLXXXXXXXXXXXEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVD----IWNH 190
VP+ T K W W+ ++ AT G D IWN
Sbjct: 184 GGWVPLQTFTQHQGAV------------KAVAWC---PWQSNVLATGGGTSDRHIRIWNV 228
Query: 191 NRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRANEDC 250
+++ V S+ ++P +++ A
Sbjct: 229 CSGACLSAVD-AHSQVCSILWSPHYKELISGHG---------------------FAQNQL 266
Query: 251 NCYSYDSR-KLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQ 299
+ Y + K+ E K GH S V+ + SP G + + D T+R+++
Sbjct: 267 VIWKYPTMAKVAELK----GHTSRVLSLTMSPDGATVASAAADETLRLWR 312
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 29/165 (17%), Positives = 60/165 (36%), Gaps = 22/165 (13%)
Query: 215 EPNVLATTASDRSITLYDLR-------MSSPARKV---------IMRANEDCNCYSYDSR 258
E N LA S + L+D++ M+S + +V + + + + +D R
Sbjct: 78 EGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVR 137
Query: 259 KLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREI------YHTK 312
+ GH V + ++P GR +G D + ++ G + H
Sbjct: 138 VAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQG 197
Query: 313 RMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLHPREQ 357
++ V + + G+ D ++R+W + L + Q
Sbjct: 198 AVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ 242
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 10/89 (11%)
Query: 57 PFIGALD--GHRDGISCMAKNPNYLKGFFSGSMDGDIRLW---DIANRR----TVCQYSG 107
I LD H+ I +A P + +GS D + +W + A+R + G
Sbjct: 47 TLIDVLDETAHKKAIRSVAWRP-HTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEG 105
Query: 108 HQGAVRGLTVSTDGRILVSCGTDCTVKLW 136
H+ V+G+ S DG L +C D +V +W
Sbjct: 106 HENEVKGVAWSNDGYYLATCSRDKSVWIW 134
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 84 SGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVST-DGRILVSCGTDCTVKLWN 137
SGS D I++WD+A + + Y H V + S + +SC D + LW+
Sbjct: 144 SGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWD 198
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 32.0 bits (71), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 46/119 (38%), Gaps = 5/119 (4%)
Query: 233 LRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFV-TGSY 291
L+ S P R + + + Y K + H S V D+++SP EFV T
Sbjct: 168 LKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS 227
Query: 292 DRTIRIFQYNGGRSREIYHTKR---MQRVFCVKFSCDASYVISGSDDTNLRLWKAKASE 347
DR I F G + + +F + + + G+D T +R+W S+
Sbjct: 228 DRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADAT-IRVWDVTTSK 285
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 32.0 bits (71), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 25/57 (43%)
Query: 82 FFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNV 138
FS S D +W N + GH G + + V + V+ D ++KLW+V
Sbjct: 47 LFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDV 103
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 59 IGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQY 105
+G LDGH I + + + K +GS D I+LWD++N + V +
Sbjct: 67 LGTLDGHTGTIWSIDVDC-FTKYCVTGSADYSIKLWDVSNGQCVATW 112
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
Query: 269 GHESAVMDIDYSPTGREFVTGSYDRTIRI-FQYNGGRSREIYHTKRMQRVFCVKFSCDAS 327
GHE + + Y+ G + S D + + + NG R + ++ + C
Sbjct: 30 GHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTL--DGHTGTIWSIDVDCFTK 87
Query: 328 YVISGSDDTNLRLW 341
Y ++GS D +++LW
Sbjct: 88 YCVTGSADYSIKLW 101
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 31.6 bits (70), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 45/119 (37%), Gaps = 5/119 (4%)
Query: 233 LRMSSPARKVIMRANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFV-TGSY 291
L+ S P R + + Y K + H S V D+++SP EFV T
Sbjct: 168 LKQSRPXRSXTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS 227
Query: 292 DRTIRIFQYNGGRSREIYHTKR---MQRVFCVKFSCDASYVISGSDDTNLRLWKAKASE 347
DR I F G + + +F + + + G+D T +R+W S+
Sbjct: 228 DRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADAT-IRVWDVTTSK 285
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 13/99 (13%)
Query: 205 TVISVRFNPAEPN-VLATTASDRSITLYDLRMSSPARKVIMRANE-DCNCYSYDSRKLDE 262
+V SV++ P E +L +SD +++ + + + +I+ A+ N S+ ++E
Sbjct: 101 SVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE 160
Query: 263 AKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYN 301
H G + + R+FVTG D ++I++YN
Sbjct: 161 -DGEHNGTKES----------RKFVTGGADNLVKIWKYN 188
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 82/189 (43%), Gaps = 29/189 (15%)
Query: 121 GRILVSCGTDCTVKLWNVPVATLXXXXXXXXXXXEPLAVYVWKNSFWAVD--HQWEGDLF 178
G+ L +C +D T+K++ V T + L + + W VD H G +
Sbjct: 23 GKRLATCSSDKTIKIFEVEGET--------HKLIDTLTGH--EGPVWRVDWAHPKFGTIL 72
Query: 179 ATAG--AQVDIW--NHNRSQPINSFQWGTDTVISVRFNPAEPN-VLATTASDRSITLYDL 233
A+ +V IW + R I + +V SV++ P E +L +SD +++ +
Sbjct: 73 ASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEF 132
Query: 234 RMSSPARKVIMRANE-DCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYD 292
+ + +I+ A+ N S+ ++E H G + + R+FVTG D
Sbjct: 133 KENGTTSPIIIDAHAIGVNSASWAPATIEE-DGEHNGTKES----------RKFVTGGAD 181
Query: 293 RTIRIFQYN 301
++I++YN
Sbjct: 182 NLVKIWKYN 190
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 13/99 (13%)
Query: 205 TVISVRFNPAEPN-VLATTASDRSITLYDLRMSSPARKVIMRANE-DCNCYSYDSRKLDE 262
+V SV++ P E +L +SD +++ + + + +I+ A+ N S+ ++E
Sbjct: 101 SVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE 160
Query: 263 AKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYN 301
H G + + R+FVTG D ++I++YN
Sbjct: 161 -DGEHNGTKES----------RKFVTGGADNLVKIWKYN 188
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 45/204 (22%), Positives = 86/204 (42%), Gaps = 29/204 (14%)
Query: 106 SGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLXXXXXXXXXXXEPLAVYVWKNS 165
+ H + + G+ L +C +D T+K++ V T + L + +
Sbjct: 6 NAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET--------HKLIDTLTGH--EGP 55
Query: 166 FWAVD--HQWEGDLFATAG--AQVDIW--NHNRSQPINSFQWGTDTVISVRFNPAEPN-V 218
W VD H G + A+ +V IW + R I + +V SV++ P E +
Sbjct: 56 VWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPL 115
Query: 219 LATTASDRSITLYDLRMSSPARKVIMRANE-DCNCYSYDSRKLDEAKCVHMGHESAVMDI 277
L +SD +++ + + + +I+ A+ N S+ ++E H G + +
Sbjct: 116 LLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE-DGEHNGTKES---- 170
Query: 278 DYSPTGREFVTGSYDRTIRIFQYN 301
R+FVTG D ++I++YN
Sbjct: 171 ------RKFVTGGADNLVKIWKYN 188
>pdb|3DW8|B Chain B, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
pdb|3DW8|E Chain E, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
Length = 447
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 71/174 (40%), Gaps = 29/174 (16%)
Query: 203 TDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARK--VIMRANEDCNCYSYDSRKL 260
T+ + + F+P N ++S +I L D+R S+ + + ED + S+ S +
Sbjct: 226 TEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEII 285
Query: 261 DEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYN-GGRSREIYHTKRMQRVF- 318
S++ D+ +S +GR +T Y +++++ N R E Y R
Sbjct: 286 -----------SSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKL 333
Query: 319 -------CV--KFSC----DASYVISGSDDTNLRLWKAKASEQLGVLHPREQRK 359
C+ KF C S V++GS + R++ + + RE K
Sbjct: 334 CSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNK 387
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 49/100 (49%), Gaps = 15/100 (15%)
Query: 205 TVISVRFNPAE--PNVLATTASDRSITLYDLRMSSPARKVIMRANE-DCNCYSYDSRKLD 261
+V SV++ P E P +L + SD +++ + + + +I+ A+ N S+ ++
Sbjct: 101 SVNSVQWAPHEYGPXLLVAS-SDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIE 159
Query: 262 EAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYN 301
E H G + + R+FVTG D ++I++YN
Sbjct: 160 E-DGEHNGTKES----------RKFVTGGADNLVKIWKYN 188
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 11/79 (13%)
Query: 48 AKLEKIFARPFIGALDG---HRDG------ISCMAKNPNYLKGFFSGSMDGDIRLW--DI 96
A+L + PFI +L HR ++ + +P + GS GDI LW D+
Sbjct: 45 AQLRQCLQEPFIRSLKSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDV 104
Query: 97 ANRRTVCQYSGHQGAVRGL 115
N+ + Q G A+ G+
Sbjct: 105 QNKTSFIQGMGPGDAITGM 123
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 11/79 (13%)
Query: 48 AKLEKIFARPFIGALDG---HRDG------ISCMAKNPNYLKGFFSGSMDGDIRLW--DI 96
A+L + PFI +L HR ++ + +P + GS GDI LW D+
Sbjct: 46 AQLRQCLQEPFIRSLKSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDV 105
Query: 97 ANRRTVCQYSGHQGAVRGL 115
N+ + Q G A+ G+
Sbjct: 106 QNKTSFIQGMGPGDAITGM 124
>pdb|3JTY|A Chain A, Crystal Structure Of A Benf-Like Porin From Pseudomonas
Fluorescens Pf-5
pdb|3JTY|B Chain B, Crystal Structure Of A Benf-Like Porin From Pseudomonas
Fluorescens Pf-5
pdb|3JTY|C Chain C, Crystal Structure Of A Benf-Like Porin From Pseudomonas
Fluorescens Pf-5
pdb|3JTY|D Chain D, Crystal Structure Of A Benf-Like Porin From Pseudomonas
Fluorescens Pf-5
Length = 402
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 4/68 (5%)
Query: 44 ALTAAKLEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVC 103
AL A+L+ I+++ FI + G + N GFF G DG R D+ NR
Sbjct: 198 ALWNAQLKDIYSQQFINLIHSQPLGDWTLGANL----GFFYGKEDGSARAGDMENRTWSG 253
Query: 104 QYSGHQGA 111
+S G
Sbjct: 254 LFSAKYGG 261
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 59 IGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDI 96
I +L G R + C+ ++PN +G DG + +WD+
Sbjct: 229 ILSLTGDRVPLHCVDRHPNQQHVVATGGQDGMLSIWDV 266
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 5/85 (5%)
Query: 269 GHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSR-EIYHTKRMQRVFCVKFSCDAS 327
GH+ V D+ Y GR T S D+ I++F+ + S E+ + R V +
Sbjct: 9 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASP 68
Query: 328 ----YVISGSDDTNLRLWKAKASEQ 348
+ S S D ++LW+ ++
Sbjct: 69 EYGRIIASASYDKTVKLWEEDPDQE 93
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 5/85 (5%)
Query: 269 GHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSR-EIYHTKRMQRVFCVKFSCDAS 327
GH+ V D+ Y GR T S D+ I++F+ + S E+ + R V +
Sbjct: 9 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASP 68
Query: 328 ----YVISGSDDTNLRLWKAKASEQ 348
+ S S D ++LW+ ++
Sbjct: 69 EYGRIIASASYDKTVKLWEEDPDQE 93
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 5/85 (5%)
Query: 269 GHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSR-EIYHTKRMQRVFCVKFSCDAS 327
GH+ V D+ Y GR T S D+ I++F+ + S E+ + R V +
Sbjct: 7 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASP 66
Query: 328 ----YVISGSDDTNLRLWKAKASEQ 348
+ S S D ++LW+ ++
Sbjct: 67 EYGRIIASASYDKTVKLWEEDPDQE 91
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.134 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,502,251
Number of Sequences: 62578
Number of extensions: 486725
Number of successful extensions: 1841
Number of sequences better than 100.0: 103
Number of HSP's better than 100.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 885
Number of HSP's gapped (non-prelim): 529
length of query: 434
length of database: 14,973,337
effective HSP length: 102
effective length of query: 332
effective length of database: 8,590,381
effective search space: 2852006492
effective search space used: 2852006492
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)